# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014299.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014299.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014299.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       gi|300712770|ref|YP_003738582.1|  [L=134]
Description: hypothetical protein HacjB3_17243 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   24.5   0.0    2.3e-05   23.9   0.0    1.3  1  HTH_24    Winged helix-turn-helix DNA-binding
     0.0022   17.8   0.0     0.0037   17.1   0.0    1.4  1  DUF1421   UBA-like domain (DUF1421)
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.023   14.9   0.0    1.3  1  PaaX      PaaX-like protein
      0.019   14.8   0.0      0.032   14.1   0.0    1.3  1  MarR_2    MarR family
      0.038   13.9   0.0      0.059   13.3   0.0    1.3  1  TrmB      Sugar-specific transcriptional regulator TrmB
      0.054   13.4   0.0      0.077   12.9   0.0    1.2  1  MarR      MarR family


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   7.6e-09   2.3e-05       7      48 .]      13      54 ..      10      54 .. 0.97

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 7.6e-09
                            HTH_24  7 kILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                                      +IL  L +n++ +  e+A  +g S + v+   kr+ ++G I+
  gi|300712770|ref|YP_003738582.1| 13 QILGFLDQNGKSTVHEIATGIGYSNGHVRHVAKRMAKSGQIE 54
                                      7***************************************96 PP

>> DUF1421  UBA-like domain (DUF1421)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.2e-06    0.0037       8      30 ..      30      52 ..      25      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-06
                           DUF1421  8 vasMGfrrDqVrsvvqrmveaGq 30
                                      ++ +G+++ +Vr v++rm  +Gq
  gi|300712770|ref|YP_003738582.1| 30 ATGIGYSNGHVRHVAKRMAKSGQ 52
                                      5679******************9 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   7.7e-06     0.023      28      61 ..      28      61 ..      23      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.7e-06
                              PaaX 28 rllaelGiseslvRaalsRlakaGwlvrekegrr 61
                                      ++  ++G s++ vR    R+ak G++ +ek    
  gi|300712770|ref|YP_003738582.1| 28 EIATGIGYSNGHVRHVAKRMAKSGQIEGEKSSSV 61
                                      57889************************98765 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-05     0.032       9      56 ..      13      58 ..       8      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                                      HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
                            MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                                      ++L++L  ++    tv e+a   g+s + v  + kr+ + G +e +++
  gi|300712770|ref|YP_003738582.1| 13 QILGFLDQNGK--STVHEIATGIGYSNGHVRHVAKRMAKSGQIEGEKS 58
                                      89********9..8***************************9998766 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     2e-05     0.059      19      58 ..      20      59 ..      11      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
                                      HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
                              TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                                      ++g++t+ eia  +g +   v  v +++ + G +e ek++
  gi|300712770|ref|YP_003738582.1| 20 QNGKSTVHEIATGIGYSNGHVRHVAKRMAKSGQIEGEKSS 59
                                      79**********************************9987 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05     0.077       8      52 ..      14      58 ..      10      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
                                      HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
                              MarR  8 iLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsks 52
                                      iL  l+++g  +v+e+a  +g s+++v  v++r+ k G ie +ks
  gi|300712770|ref|YP_003738582.1| 14 ILGFLDQNGKSTVHEIATGIGYSNGHVRHVAKRMAKSGQIEGEKS 58
                                      5666999*******************************9986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 949.17
//
Query:       gi|300712771|ref|YP_003738583.1|  [L=166]
Description: hypothetical protein HacjB3_17248 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.044   13.5   0.2      0.072   12.8   0.0    1.5  2  DUF4364   Domain of unknown function (DUF4364)
        0.1   12.6   1.2        1.6    8.8   0.5    2.5  2  LisH      LisH
       0.88    9.4   2.6        4.2    7.2   0.3    2.3  2  DUF2733   Protein of unknown function (DUF2733)


Domain annotation for each model (and alignments):
>> DUF4364  Domain of unknown function (DUF4364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.3   7.9e+03      85      98 ..      81      94 ..      78     100 .. 0.62
   2 ?   12.8   0.0   1.2e-05     0.072      38      77 ..     126     165 ..     108     166 .] 0.88

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
                           DUF4364 85 ideylkenkeelkk 98
                                      i +yl en ++ k+
  gi|300712771|ref|YP_003738583.1| 81 ILKYLTENGKSKKQ 94
                                      56666666555554 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.2e-05
                           DUF4364  38 qalseLvesglieeeekenktlykiTekGketlelfenri 77 
                                       +++s L+++ ++++++   +++ +iT+ Gk+t++ fe  i
  gi|300712771|ref|YP_003738583.1| 126 HIMSYLLDNRYVHVRSVGREKQVEITNHGKDTVRAFEYLI 165
                                       46799*******************************9876 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.054   3.2e+02       7      15 ..      81      89 ..      81      89 .. 0.94
   2 ?    8.8   0.5   0.00027       1.6       3      18 ..     123     138 ..     122     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.054
                                      HHHHHHHCT CS
                              LisH  7 IydYLvkeG 15
                                      I+ YL ++G
  gi|300712771|ref|YP_003738583.1| 81 ILKYLTENG 89
                                      899*****9 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00027
                                       HHHHHHHHHHHCT-HH CS
                              LisH   3 LNrLIydYLvkeGyee 18 
                                       L+ +I+ YL+ + y++
  gi|300712771|ref|YP_003738583.1| 123 LDTHIMSYLLDNRYVH 138
                                       899***********98 PP

>> DUF2733  Protein of unknown function (DUF2733)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.037   2.2e+02      24      31 ..       7      14 ..       3      14 .. 0.92
   2 ?    7.2   0.3   0.00071       4.2      13      26 ..      48      61 ..      47      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.037
                           DUF2733 24 NvveDfEe 31
                                      N+v++fEe
  gi|300712771|ref|YP_003738583.1|  7 NIVNEFEE 14
                                      9******7 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00071
                           DUF2733 13 npvkDVdGepINvv 26
                                      n + D dG++INv+
  gi|300712771|ref|YP_003738583.1| 48 NAIYDDDGKVINVT 61
                                      779999*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1196.62
//
Query:       gi|300712772|ref|YP_003738584.1|  [L=281]
Description: ATPase involved in chromosome partitioning-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-20   71.5   0.0    1.2e-19   71.0   0.0    1.2  1  AAA_31       AAA domain
    4.7e-09   36.4   0.0    6.8e-09   35.8   0.0    1.2  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    9.7e-07   28.3   0.3     0.0037   16.6   0.0    2.2  2  MipZ         ATPase MipZ
    4.6e-06   26.3   0.0    1.8e-05   24.3   0.0    1.8  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
     0.0099   15.3   0.0      0.021   14.3   0.0    1.5  2  ParA         NUBPL iron-transfer P-loop NTPase
  ------ inclusion threshold ------
      0.014   14.6   0.5      0.023   13.9   0.5    1.7  1  ArsA_ATPase  Anion-transporting ATPase
       0.33   11.4   2.4         12    6.8   0.2    3.0  2  Octapeptide  Octapeptide repeat


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   4.5e-23   1.2e-19       9     170 ..      13     189 ..       7     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 4.5e-23
                            AAA_31   9 qKGGvGKTTtsvnlaaala.klgkkvLlvDl.DpQanattglgiekne..iektlyevl.....ieeknikeaiikt 76 
                                        KGGvGKTT++  +a++     g  +Ll+Dl  +Q+ ++t++g+  +    +  +  v+     + ++ni+++  + 
  gi|300712772|ref|YP_003738584.1|  13 PKGGVGKTTSTAHIAVSAHnDHGLDTLLIDLaGTQNDLATQFGLADDVrdPDAPISAVFsenwsFIRENIDNVFERM 89 
                                       6***************999799********83589999999999544323566677774444443456666666655 PP

                            AAA_31  77 kvenl...dlipssidLaeaeielvelekkeei..lkell.ekvkdeYDyiiiDcpPsLglltenaLvasdsviipv 147
                                        +e+    dlip++  L + +++l+++ ++++   l++++ ++v  +YD++++D p + + +t+n+L+a++ vi p+
  gi|300712772|ref|YP_003738584.1|  90 VFETDegpDLIPADNGLGAEDNNLANVPRENRYdrLERFItDEVAPRYDLVLLDLPGKEDNITINGLFAAENVIAPL 166
                                       54444445******************98885443486655489********************************** PP

                            AAA_31 148 qaeayaleGleqllktieevkkk 170
                                       ++ ++  + le+l + +  ++++
  gi|300712772|ref|YP_003738584.1| 167 KPGEFERKQLENLQRELAAIRDD 189
                                       ************99998888765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.7e-12   6.8e-09       6     123 ..      13     243 ..      10     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.7e-12
                                       SSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH........................... CS
                                       xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
                              CbiA   6 tkGGvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep........................... 54 
                                        kGGvGKTt +a++a++  + +gl++ll+D+    n la+ +gl  d++                            
  gi|300712772|ref|YP_003738584.1|  13 PKGGVGKTTSTAHIAVSAHNdHGLDTLLIDLAGTQNDLATQFGLADDVRDpdapisavfsenwsfirenidnvferm 89 
                                       59***************99989********777779999999999999999************************** PP

                                       ............................................................................. CS
                                       ............................................................................. RF
                              CbiA  55 ............................................................................. 54 
                                                                                                                    
  gi|300712772|ref|YP_003738584.1|  90 vfetdegpdlipadnglgaednnlanvprenrydrlerfitdevaprydlvlldlpgkednitinglfaaenviapl 166
                                       ********************************************************999999999999999999999 PP

                                       ........CCHCCCHHHHHHCHCHHHH....EEEEEEEEESS...-TTCHHHHHHHHHHCTS-EEE.EEE--CCHCC CS
                                       ........xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
                              CbiA  55 ........dlkrllellealgkkkall..lkiagvvlnrvdgeneetllkealeelkqrygvpvlg.viprdeavae 120
                                                l+ l + l+a++    +    ++  v +++vd+    t+l + +++++++  +++ g  i+++ ++  
  gi|300712772|ref|YP_003738584.1| 167 kpgeferkQLENLQRELAAIRDDGDHDaqPMLQLVFATMVDST---TNLADEFTNVLAEEYPKISGpPISESANIGN 240
                                       9999977733333333444444333336677777777888776...5555555555544455555566666666655 PP

                                       CCH CS
                                       xxx RF
                              CbiA 121 apa 123
                                         a
  gi|300712772|ref|YP_003738584.1| 241 EQA 243
                                       555 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00016       0.4       9      45 ..      14      51 ..      11      62 .. 0.84
   2 !   16.6   0.0   1.4e-06    0.0037      72     130 ..     110     167 ..      83     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
                                      STTSSHHHHHHHHHHHH.HTTT--EEEEE--TTT-HHH CS
                              MipZ  9 kGGsGksttavhvavaL.lkkGarvaaidldlrqrtla 45
                                      kGG Gk+t + h+av+   ++G+    idl   q+ la
  gi|300712772|ref|YP_003738584.1| 14 KGGVGKTTSTAHIAVSAhNDHGLDTLLIDLAGTQNDLA 51
                                      9************9965167899999999998887765 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.4e-06
                                       S-HHHHTTS-HHHHHHHHHH.HHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEE CS
                              MipZ  72 eaeeaeveeeeeaevaelee.lvadleaeldfividtPGsdsalsrlahsladtlvtPln 130
                                       +++ a+v++e+  +  +le+ ++++++ ++d++++d PG++++++  +   a+ +++Pl 
  gi|300712772|ref|YP_003738584.1| 110 DNNLANVPRENRYD--RLERfITDEVAPRYDLVLLDLPGKEDNITINGLFAAENVIAPLK 167
                                       45555555555544..888724578999******************************96 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   7.1e-09   1.8e-05      10     147 ..      14     168 ..      12     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.1e-09
                          CBP_BcsQ  10 RGGvGttsllaaLawalh.elgesvlviDls.pdnlLrlhFnvd..ieqre...........gwaraeldgapwrqa 71 
                                       +GGvG+t+ +a +a + h  +g   l+iDl+ ++n L+++F ++  +++ +           +++r ++d + ++  
  gi|300712772|ref|YP_003738584.1|  14 KGGVGKTTSTAHIAVSAHnDHGLDTLLIDLAgTQNDLATQFGLAddVRDPDapisavfsenwSFIRENID-NVFERM 89 
                                       6************9866526999******973689******87511333331111111110033344444.568899 PP

                          CBP_BcsQ  72 aleyapgldllPfGelnveekenlqq..laekaeallaalk.elkeqyrwillDlpagasaltrellaladlvllvv 145
                                       ++e  +g dl+P  +   +e +nl++   +++ ++l ++++ e++ +y+++llDlp +++++t + l  a+ v++ +
  gi|300712772|ref|YP_003738584.1|  90 VFETDEGPDLIPADNGLGAEDNNLANvpRENRYDRLERFITdEVAPRYDLVLLDLPGKEDNITINGLFAAENVIAPL 166
                                       99**********999888888888775455667888888752788********************999999998766 PP

                          CBP_BcsQ 146 ep 147
                                       +p
  gi|300712772|ref|YP_003738584.1| 167 KP 168
                                       65 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   8.3e-06     0.021      11      53 ..      13      56 ..       6      76 .. 0.77
   2 ?   -3.1   0.0       1.7   4.3e+03     100     120 ..     125     145 ..     122     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.3e-06
                              ParA 11 gKGGVGKStvavnlAlaLa.kkglkvgllDaDiyGpsiprllgv 53
                                       KGGVGK+t ++++A++ + ++gl++ l+D+  +  ++++ +g+
  gi|300712772|ref|YP_003738584.1| 13 PKGGVGKTTSTAHIAVSAHnDHGLDTLLIDLAGTQNDLATQFGL 56
                                      5***************9874678888888765554555555555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                              ParA 100 ikqllkdvewgelDyLiiDlP 120
                                       ++++++d      D++++DlP
  gi|300712772|ref|YP_003738584.1| 125 LERFITDEVAPRYDLVLLDLP 145
                                       677888888888999999997 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5     9e-06     0.023       9      37 ..      14      43 ..       7     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9e-06
                                      STTSSHHHHHHHHHHH.HHHTTS-EEEEE- CS
                       ArsA_ATPase  9 KGGVGKttvsaatavk.lsekgkkvllist 37
                                      KGGVGKtt+ a +av    ++g ++lli +
  gi|300712772|ref|YP_003738584.1| 14 KGGVGKTTSTAHIAVSaHNDHGLDTLLIDL 43
                                      9**************956778899999865 PP

>> Octapeptide  Octapeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.068   1.7e+02       2       7 ..     107     112 ..     107     113 .. 0.88
   2 ?    6.8   0.2    0.0045        12       1       6 [.     145     150 ..     145     151 .. 0.97

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.068
                       Octapeptide   2 gkEDnN 7  
                                       g EDnN
  gi|300712772|ref|YP_003738584.1| 107 GAEDNN 112
                                       67**** PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0045
                       Octapeptide   1 PgkEDn 6  
                                       PgkEDn
  gi|300712772|ref|YP_003738584.1| 145 PGKEDN 150
                                       9****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2007.09
//
Query:       gi|300712773|ref|YP_003738585.1|  [L=130]
Description: hypothetical protein HacjB3_17258 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1002.29
//
Query:       gi|300712774|ref|YP_003738586.1|  [L=46]
Description: hypothetical protein HacjB3_17263 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.18   11.7   0.0    1.2  1  GRIP      GRIP domain


Domain annotation for each model (and alignments):
>> GRIP  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     1e-05      0.18      12      35 ..       7      30 ..       4      31 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1e-05
                              GRIP 12 lqFLeskeaserkqLvpVlstlLk 35
                                        F+e++++ ++ q+ p+ stlL+
  gi|300712774|ref|YP_003738586.1|  7 QHFMEYPPDVAQGQMAPIPSTLLQ 30
                                      57******99999**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.41
# Mc/sec: 337.94
//
Query:       gi|300712775|ref|YP_003738587.1|  [L=131]
Description: PilT protein domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-11   45.4   0.0    1.2e-11   45.2   0.0    1.0  1  PIN       PIN domain


Domain annotation for each model (and alignments):
>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   6.6e-16   1.2e-11       1     121 [.       2     125 ..       2     126 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 6.6e-16
                                       EEE-HHHHHHHH.TTSHHHHHHHHHHHTS..SEEEEEHHHHHHHHHHHHSSCHCHHHHHHHHHHHHHHHTSEEEEBC CS
                               PIN   1 ivlDTsvliall.rgeekaeaarklleel..eelvtsalvlaEllyvlarrkskrekaaelvelllllsalkilpid 74 
                                       ++ DT++li+++  ++e +e a++lle+    +  +++++l E+l++ ar       aa + +l ++l+    lp++
  gi|300712775|ref|YP_003738587.1|   2 YCPDTNFLIDYVdTEREASEDAKALLESNpdRAYRIPSVALFEVLRGGAR----LRGAAGVADLIEQLDWADHLPLT 74 
                                       689*********99999999999999999*99999***************....66666666666669999999999 PP

                                       HHHHHHHHHHHHHHH.....SBHHHHHHHHHHHHHT-EEE.ESSTHHHHHHH CS
                               PIN  75 aeiaeeaaeialkyg.....llpnDaliaAtAkehgikliatfDedfrrvak 121
                                        ++a+ea  +  +++     +++ D lia t +e   +++ t+D++f++v++
  gi|300712775|ref|YP_003738587.1|  75 PPAAREAVLVDGELEtsgqkINLGDVLIAGTVREASGTIV-TRDSHFANVDG 125
                                       999999999999999999*******************888.********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1028.65
//
Query:       gi|300712776|ref|YP_003738588.1|  [L=116]
Description: hypothetical protein HacjB3_17273 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-08   32.0   0.1    1.9e-07   31.0   0.0    1.5  2  HTH_20         Helix-turn-helix domain
    8.9e-07   28.8   0.0    1.7e-06   27.8   0.0    1.5  1  HTH_11         HTH domain
    2.4e-05   24.1   0.1    3.9e-05   23.4   0.1    1.3  1  MarR_2         MarR family
    0.00028   20.4   0.0    0.00052   19.5   0.0    1.4  1  HTH_24         Winged helix-turn-helix DNA-binding
    0.00032   20.4   0.4    0.00073   19.3   0.0    1.8  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
    0.00059   19.6   0.0    0.00087   19.0   0.0    1.2  1  HTH_IclR       IclR helix-turn-helix domain
    0.00068   19.5   0.0    0.00096   19.0   0.0    1.3  1  TrmB           Sugar-specific transcriptional regulator TrmB
    0.00074   19.7   0.1     0.0018   18.4   0.1    1.7  1  HTH_17         Helix-turn-helix domain
    0.00076   19.0   0.0     0.0011   18.5   0.0    1.2  1  HTH_CodY       CodY helix-turn-helix domain
      0.003   17.5   0.0     0.0047   16.9   0.0    1.3  1  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.004   16.9   0.0     0.0067   16.2   0.0    1.3  1  HTH_23         Homeodomain-like domain
  ------ inclusion threshold ------
      0.013   15.1   0.3      0.023   14.3   0.0    1.5  2  GntR           Bacterial regulatory proteins, gntR family
      0.027   14.0   0.0      0.059   12.9   0.0    1.6  1  Sigma70_r4     Sigma-70, region 4
      0.028   14.0   0.0       0.15   11.7   0.0    2.0  2  HTH_50         Helix-turn-helix domain
      0.031   14.2   0.1      0.072   13.0   0.0    1.6  2  MarR           MarR family
      0.062   13.1   0.0       0.11   12.4   0.0    1.3  1  HTH_30         PucR C-terminal helix-turn-helix domain
      0.064   13.0   0.0       0.13   12.1   0.0    1.5  1  HTH_38         Helix-turn-helix domain
      0.065   13.2   0.0      0.099   12.6   0.0    1.2  1  HTH_36         Helix-turn-helix domain
      0.083   12.7   0.0       0.14   12.0   0.0    1.4  1  HTH_10         HTH DNA binding domain
       0.18   12.2   0.0       0.26   11.6   0.0    1.2  1  Rrf2           Transcriptional regulator


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.1e-10   1.9e-07      19      54 ..      19      59 ..      14      66 .. 0.81
   2 ?   -3.0   0.0       9.2   8.3e+03      26      31 ..     100     105 ..      91     112 .. 0.50

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.1e-10
                                      H....STCTTB-HHHHHHHHTS-HHHHHHHHHHHHH.CTTE CS
                            HTH_20 19 L....araegltaselaerldlskntlsyHLrvLee.agLv 54
                                      +     ++e+lta+e+a+rl++s++t+ ++Lr+L+e  + v
  gi|300712776|ref|YP_003738588.1| 19 FrsrdDPNEPLTAPEIADRLGCSRTTALNRLRELAErGDVV 59
                                      55555679****************************55554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.2
                                       -HHHHH CS
                            HTH_20  26 tasela 31 
                                       t ++l+
  gi|300712776|ref|YP_003738588.1| 100 TRKQLD 105
                                       223333 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.9e-09   1.7e-06      14      49 ..      27      62 ..      15      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.9e-09
                            HTH_11 14 gpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIese 49
                                      +p+++ e+A++L++Sr+t  +++++L e g+ + ++
  gi|300712776|ref|YP_003738588.1| 27 EPLTAPEIADRLGCSRTTALNRLRELAERGDVVSKK 62
                                      67****************************555444 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   4.4e-08   3.9e-05       9      52 ..      14      59 ..       9      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.4e-08
                                      HHHHHHHCTTTS..EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
                            MarR_2  9 rvLaaLgrrpgr..dltvgelarrlglsksavsrilkrLvaaGLve 52
                                      +vL + + r+++  +lt+ e+a+rlg s+ ++ ++l++L ++G v+
  gi|300712776|ref|YP_003738588.1| 14 DVLEEFRSRDDPnePLTAPEIADRLGCSRTTALNRLRELAERGDVV 59
                                      899999999999999***************************9665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.8e-07   0.00052      15      45 ..      26      56 ..      13      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.8e-07
                            HTH_24 15 nprisqreLAerlglSpstvnrrlkrLeeeG 45
                                      n  ++  e+A+rlg S++t + rl++L e G
  gi|300712776|ref|YP_003738588.1| 26 NEPLTAPEIADRLGCSRTTALNRLRELAERG 56
                                      677999*********************9988 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.2e-07   0.00073      18      41 ..      29      52 ..      23      53 .. 0.90
   2 ?   -3.1   0.1       8.3   7.4e+03       3       9 ..      76      82 ..      76      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.2e-07
                     HTH_AsnC-type 18 isyaeLAervGlSestvlrRvrrL 41
                                      ++  e+A+r+G+S++t+l+R+r L
  gi|300712776|ref|YP_003738588.1| 29 LTAPEIADRLGCSRTTALNRLREL 52
                                      5678*****************988 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.3
                     HTH_AsnC-type  3 eiDrkIL 9 
                                      e+Dr +L
  gi|300712776|ref|YP_003738588.1| 76 EFDRDLL 82
                                      6899998 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.7e-07   0.00087      12      46 ..      19      56 ..      14      60 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.7e-07
                                      -CTTBSS...-BHHHHHHHHTS-HHHHHHHHHHHHHTT CS
                          HTH_IclR 12 laeapqe...ltlselArrtglpkStvhRlLqtLvelG 46
                                      +++++ +   lt  e+A+r+g +++t+ + L+ L e+G
  gi|300712776|ref|YP_003738588.1| 19 FRSRDDPnepLTAPEIADRLGCSRTTALNRLRELAERG 56
                                      55555555559*************************99 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.1e-06   0.00096      20      56 ..      26      62 ..      25      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.1e-06
                                      HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
                              TrmB 20 lgpatadeiaeelgvprskvYevLrsLedkGlVerek 56
                                      ++p+ta eia +lg +r+++ + Lr+L ++G V  +k
  gi|300712776|ref|YP_003738588.1| 26 NEPLTAPEIADRLGCSRTTALNRLRELAERGDVVSKK 62
                                      689****************************998776 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1     2e-06    0.0018       2      45 ..      29      79 ..      28      84 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2e-06
                            HTH_17  2 ltveEaAelLgvsrstvy.rlir...rgelpaak.iGrr...wriprsdlee 45
                                      lt  E+A+ Lg+sr+t+  rl+    rg+  + k +G+r   w  p  ++++
  gi|300712776|ref|YP_003738588.1| 29 LTAPEIADRLGCSRTTALnRLRElaeRGDV-VSKkVGGRsrvWWLPPTEFDR 79
                                      899*************8745663555****.886577775777777777775 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-06    0.0011       5      40 ..      29      64 ..      26      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
                          HTH_CodY  5 LtaskiaDriGitrsvivnaLrkLesaGiiesrsLG 40
                                      Lta +iaDr+G  r    n Lr L   G + s+ +G
  gi|300712776|ref|YP_003738588.1| 29 LTAPEIADRLGCSRTTALNRLRELAERGDVVSKKVG 64
                                      99**********************999988887776 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.3e-06    0.0047      20      51 ..      27      58 ..      14      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.3e-06
                                      EEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSE CS
                         HTH_Crp_2 20 lpltqeelAsmlGltretvsrilseLkregli 51
                                       plt  e+A++lG +r t    l+eL ++g +
  gi|300712776|ref|YP_003738588.1| 27 EPLTAPEIADRLGCSRTTALNRLRELAERGDV 58
                                      489999**********************9955 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.5e-06    0.0067      19      45 ..      30      56 ..      29      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.5e-06
                            HTH_23 19 svreIAreLgvsrrTvyrwlkryreeG 45
                                      + +eIA++Lg+sr T  + l+  +e G
  gi|300712776|ref|YP_003738588.1| 30 TAPEIADRLGCSRTTALNRLRELAERG 56
                                      679************998888776665 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.6e-05     0.023      20      59 ..      25      63 ..      20      67 .. 0.90
   2 ?   -3.4   0.1       8.6   7.7e+03       7      15 ..     102     110 ..      98     112 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
                                      TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
                              GntR 20 pGdkLPsereLaaefgVsrttvReALrrLeaeglverrqg 59
                                      p+++L +  e+a+++g srtt    Lr+L+++g v++++ 
  gi|300712776|ref|YP_003738588.1| 25 PNEPL-TAPEIADRLGCSRTTALNRLRELAERGDVVSKKV 63
                                      89999.9*************************99988875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.6
                                       HHHHHHHHT CS
                              GntR   7 erLredIls 15 
                                        +L+ed+++
  gi|300712776|ref|YP_003738588.1| 102 KQLDEDLRE 110
                                       456666554 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.6e-05     0.059      17      38 ..      23      46 ..      14      55 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.6e-05
                                      H..TTT--HHHHHHHHTS-HHHHH CS
                        Sigma70_r4 17 f..geglTleEIgerlgiSrerVr 38
                                          e+lT  EI++rlg Sr ++ 
  gi|300712776|ref|YP_003738588.1| 23 DdpNEPLTAPEIADRLGCSRTTAL 46
                                      36689***************9875 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.15      29      45 ..      34      50 ..      32      52 .. 0.93
   2 ?   -1.0   0.0       1.6   1.4e+03      10      18 ..      76      84 ..      75      87 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                            HTH_50 29 lAkrLGvShtaianklr 45
                                      +A rLG S t+ +n+lr
  gi|300712776|ref|YP_003738588.1| 34 IADRLGCSRTTALNRLR 50
                                      699*************9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
                            HTH_50 10 efErelikk 18
                                      ef+r+l+k 
  gi|300712776|ref|YP_003738588.1| 76 EFDRDLLKG 84
                                      799999975 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     8e-05     0.072      16      45 ..      27      56 ..      24      62 .. 0.91
   2 ?   -2.2   0.1       4.6   4.1e+03      48      58 ..     100     110 ..     100     110 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8e-05
                                      TTEEHHHHHHHHTS-HHHHHHHHHHHHHTT CS
                              MarR 16 gplsvseLakklgvskstvtrvldrLekkG 45
                                      +pl+  e+a++lg+s++t+ + l++L ++G
  gi|300712776|ref|YP_003738588.1| 27 EPLTAPEIADRLGCSRTTALNRLRELAERG 56
                                      789999**********************99 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.6
                                       EEEEETTSTTS CS
                              MarR  48 eRskspeDrRe 58 
                                       +R++  eD Re
  gi|300712776|ref|YP_003738588.1| 100 TRKQLDEDLRE 110
                                       69999999997 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012      0.11      17      38 ..      33      54 ..      28      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
                                      HHHHHHTS-HHHHHHHHHHHHH CS
                            HTH_30 17 atAkaLhvHrnTlryRLrriee 38
                                      + A++L+++r T  +RLr + e
  gi|300712776|ref|YP_003738588.1| 33 EIADRLGCSRTTALNRLRELAE 54
                                      78****************9887 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.13      21      36 ..      29      44 ..      26      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                            HTH_38 21 lslreIArrLgrspsT 36
                                      l+  eIA rLg+s++T
  gi|300712776|ref|YP_003738588.1| 29 LTAPEIADRLGCSRTT 44
                                      6788***********9 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011     0.099      30      53 ..      33      56 ..      20      56 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
                            HTH_36 30 tlakrlglsknTvsraikeLeqlG 53
                                       +a rlg+s+ T+ + ++eL++ G
  gi|300712776|ref|YP_003738588.1| 33 EIADRLGCSRTTALNRLRELAERG 56
                                      69*******************988 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00016      0.14      25      46 ..      30      51 ..      24      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
                            HTH_10 25 tlkeLAkelGIskstlsehLrk 46
                                      t+ e+A++lG s++t++++Lr+
  gi|300712776|ref|YP_003738588.1| 30 TAPEIADRLGCSRTTALNRLRE 51
                                      6789*****************7 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0003      0.26      21      59 ..      24      62 ..      19      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0003
                                      STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
                              Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvr 59
                                      + +ep+++ eia+r + s++ +   l++L++ g v s++
  gi|300712776|ref|YP_003738588.1| 24 DPNEPLTAPEIADRLGCSRTTALNRLRELAERGDVVSKK 62
                                      56789****************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 850.66
//
Query:       gi|300712777|ref|YP_003738589.1|  [L=221]
Description: hypothetical protein HacjB3_17278 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.003   16.5   2.8     0.0063   15.4   2.8    1.4  1  Spc7            Spc7 kinetochore protein
     0.0035   17.4   1.9     0.0035   17.4   1.9    2.1  2  DUF1664         Protein of unknown function (DUF1664)
     0.0045   16.9   2.7     0.0045   16.9   2.7    1.8  1  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
     0.0051   17.3   1.5     0.0051   17.3   1.5    1.9  2  DUF16           Protein of unknown function DUF16
     0.0053   17.2   1.3      0.012   16.0   1.3    1.6  1  HrpB7           Bacterial type III secretion protein (HrpB7)
     0.0059   17.0   1.7      0.011   16.1   1.7    1.4  1  YlqD            YlqD protein
     0.0093   16.1   0.7      0.015   15.4   0.7    1.3  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
  ------ inclusion threshold ------
      0.012   15.3   1.8      0.055   13.1   1.3    2.1  2  Lebercilin      Ciliary protein causing Leber congenital amau
      0.015   15.9   2.6       0.42   11.3   2.2    2.3  2  DUF4404         Domain of unknown function (DUF4404)
      0.019   15.5   8.2      0.042   14.5   4.9    2.8  3  SlyX            SlyX
       0.02   14.7   1.4       0.38   10.5   0.1    2.6  3  Bacillus_HBL    Bacillus haemolytic enterotoxin (HBL)
      0.025   14.8   2.5      0.025   14.8   2.5    2.0  2  DUF948          Bacterial protein of unknown function (DUF948
       0.04   14.3   2.1          3    8.3   0.1    2.6  2  FlaC_arch       Flagella accessory protein C (FlaC)
      0.047   14.3   3.4      0.047   14.3   3.4    2.2  1  BST2            Bone marrow stromal antigen 2
      0.049   12.7   0.2      0.053   12.6   0.2    1.2  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
      0.075   13.2   1.7       0.11   12.7   1.7    1.3  1  CENP-Q          CENP-Q, a CENPA-CAD centromere complex subuni
      0.077   12.7   0.3       0.12   12.0   0.3    1.4  1  DUF2937         Protein of unknown function (DUF2937)
      0.087   12.7   4.3      0.074   12.9   2.7    1.7  2  SKA1            Spindle and kinetochore-associated protein 1
        0.1   12.5   0.0       0.19   11.6   0.0    1.4  1  ADH_N_2         N-terminal domain of oxidoreductase
       0.11   12.7   1.0        3.7    7.8   0.0    2.4  2  MatP_C          MatP C-terminal ribbon-helix-helix domain
       0.12   12.6   3.2       0.53   10.6   3.1    2.1  1  BLOC1_2         Biogenesis of lysosome-related organelles com
       0.13   12.4   3.4       0.17   11.9   1.6    1.9  2  COG2            COG (conserved oligomeric Golgi) complex comp
       0.13   12.1   6.2       0.32   10.9   6.2    1.7  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
       0.13   11.8   1.1       0.23   11.0   1.1    1.4  1  Fzo_mitofusin   fzo-like conserved region
       0.18   11.9   5.1      0.065   13.3   2.5    1.6  1  ADIP            Afadin- and alpha -actinin-Binding
       0.19   11.8   5.1       0.18   11.8   2.4    1.9  2  Laminin_II      Laminin Domain II
       0.23   11.3   2.3        2.7    7.9   0.0    2.6  2  HSBP1           Heat shock factor binding protein 1
       0.29   11.6   5.3       0.91   10.0   4.0    2.4  1  NPV_P10         Nucleopolyhedrovirus P10 protein
       0.33   11.7   2.6       0.44   11.4   0.1    2.1  2  DUF3349         Protein of unknown function (DUF3349)
       0.38   10.8   4.3       0.51   10.4   3.2    1.8  2  DUF2205         Short coiled-coil protein
       0.63    9.9   6.5        2.2    8.1   5.8    2.1  2  DivIC           Septum formation initiator
       0.72   10.6   6.4         10    7.0   3.2    3.5  4  CP12            CP12 domain
       0.79    8.9   5.1        2.8    7.1   5.2    1.8  2  HemX            HemX, putative uroporphyrinogen-III C-methylt
       0.82   10.2   3.7          1    9.8   2.2    2.0  1  PhoU            PhoU domain
        1.1    8.9   7.0       0.43   10.2   2.7    1.9  2  Phage_GPO       Phage capsid scaffolding protein (GPO) serine
        1.7    8.9  10.4       0.47   10.6   6.1    2.1  3  ATG16           Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.8   1.3e-05    0.0063     213     282 ..      11      76 ..       7      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
                              Spc7 213 aeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleelt 282
                                       +++e++ + ++elqe ++e++e+ie+ +e++++le+ei+    v+  + g  +  vs l+e+v++le+ +
  gi|300712777|ref|YP_003738589.1|  11 STVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIE----VQSSNVGGCHLRVSDLTERVDDLEDSH 76 
                                       67999999******************************9....888888999999***********9987 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   1.9     7e-06    0.0035      59     122 ..      11      74 ..       5      76 .. 0.92
   2 ?    0.9   0.1      0.86   4.3e+02      71     116 ..     112     158 ..     109     185 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7e-06
                           DUF1664  59 atkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                                       +t + L++ +++++++++eq+e +++ +e++++++ +++  +++v   +  v++l ++++++e+
  gi|300712777|ref|YP_003738589.1|  11 STVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLED 74 
                                       56678999***************************************************99996 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.86
                           DUF1664  71 vdkkldeqkeiskeikeevtevredl.seigedvesvkeaveglesk 116
                                       vd++l ++++ ++ i+++v +  e++ + +  d++++ +++   esk
  gi|300712777|ref|YP_003738589.1| 112 VDRELTANQKRARFIAKDVRDYAEKVpAGLFMDSQTITKVIAAAESK 158
                                       67777777777777777777777776234666777777777666655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.7   9.1e-06    0.0045      32      69 ..      10      47 ..       4      55 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.1e-06
                        TMF_DNA_bd 32 nntikkLrkknkelekeikelkkkleklekeleeleer 69
                                      + t+  L ++++el ++++e+ +++e++ +++e+le +
  gi|300712777|ref|YP_003738589.1| 10 SSTVEALAQTVEELQETVNEQAERIEQQAEKIERLETE 47
                                      55666666666666666666666666666666666654 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.5     1e-05    0.0051      40      79 ..      17      56 ..       8      75 .. 0.61
   2 ?   -1.4   0.1       6.8   3.4e+03      48      48 ..     163     163 ..     113     194 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-05
                                      HHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
                             DUF16 40 eakvdklgeqinkleqkvekqgekikelkveqkaqgeeln 79
                                       ++v+ l+e +n++++ +e+q eki++l+ e++ q+ ++ 
  gi|300712777|ref|YP_003738589.1| 17 AQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVG 56
                                      4566667777777777777777777777777777766543 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 6.8
                                       H CS
                             DUF16  48 e 48 
                                       +
  gi|300712777|ref|YP_003738589.1| 163 Q 163
                                       1 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.3   2.5e-05     0.012      87     127 ..      12      52 ..       6      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.5e-05
                             HrpB7  87 rvraaeaelaaarqaldaaedavaatarkiaRndaqidacr 127
                                        v+a+ + ++ +++++++++++++++a+ki R++ +i++  
  gi|300712777|ref|YP_003738589.1|  12 TVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQS 52 
                                       5788999******************************9965 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.7   2.2e-05     0.011      53     100 ..       8      55 ..       1      63 [. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.2e-05
                              YlqD  53 qsaqqieeiqeqvekekserlekkkqllqqleqvqkLelgsevkqgqv 100
                                       +  +++e++ + ve+ ++ ++e+ ++++qq e++++Le + ev+  +v
  gi|300712777|ref|YP_003738589.1|   8 TGSSTVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNV 55 
                                       4556899************************************99877 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.7     3e-05     0.015     148     179 ..      17      48 ..       8      73 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3e-05
                           UPF0242 148 qellqeyqetieeqrsvlekrqdqieqLeskV 179
                                        + ++e+qet++eq + +e++ ++ie+Le+ +
  gi|300712777|ref|YP_003738589.1|  17 AQTVEELQETVNEQAERIEQQAEKIERLETEI 48 
                                       45566777777777777777777777777765 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.3   0.00011     0.055     119     154 ..      20      55 ..      13      76 .. 0.92
   2 ?   -0.3   0.0       1.5   7.3e+02     141     178 ..      99     136 ..      91     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
                        Lebercilin 119 reeLqkkLeeleakleekeekikeLerkleleeksf 154
                                        eeLq+ ++e  +++e++ eki++Le ++e+++++ 
  gi|300712777|ref|YP_003738589.1|  20 VEELQETVNEQAERIEQQAEKIERLETEIEVQSSNV 55 
                                       59*****************************99985 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.5
                        Lebercilin 141 keLerkleleeksfrrqlaaekkktkeaqeevkalqee 178
                                         Ler + l e   +r+l+a +k+++ + ++v++  e+
  gi|300712777|ref|YP_003738589.1|  99 TPLERICGLPEHIVDRELTANQKRARFIAKDVRDYAEK 136
                                       56899999999999999999999999999888877665 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.2   0.00084      0.42       1      64 [.      16      76 ..      11      84 .. 0.74
   2 ?    2.8   0.0      0.39   1.9e+02      52      82 ..     147     176 ..     117     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00084
                           DUF4404  1 LkelLekLheeLeqnesldeetralLeslaedieellaeedaaaeeeelaerlneaverFeeeH 64
                                      L +++e+L+e+++++ +  e++++++e l+++ie + ++ +  +        l+e v+  e++H
  gi|300712777|ref|YP_003738589.1| 16 LAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRV---SDLTERVDDLEDSH 76
                                      56889999999999999999999999999999998877777776663...33555555555555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.39
                           DUF4404  52 rlneaverFeeeHPklagvlreildsLanmG 82 
                                       ++++ ++  e + P+  +++ +++d L ++G
  gi|300712777|ref|YP_003738589.1| 147 TITKVIAAAESKKPHT-QTVARVMDFLDELG 176
                                       6778888889999985.56778999999988 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   4.9   8.4e-05     0.042      15      53 ..      16      53 ..      11      59 .. 0.85
   2 ?    0.3   0.0       2.2   1.1e+03      40      55 ..      62      77 ..      58      85 .. 0.72
   3 ?   -1.0   0.0       5.8   2.9e+03      31      55 ..     114     138 ..     112     147 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.4e-05
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
                              SlyX 15 qedtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53
                                      + +t+eeL+++v eq+++i+++ +++++l+ +++ +++s
  gi|300712777|ref|YP_003738589.1| 16 LAQTVEELQETVNEQAERIEQQAEKIERLETEIE-VQSS 53
                                      679**************************99994.4444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 2.2
                                      HHHHHHT-XXXXXXXX CS
                              SlyX 40 lrllaerlkeleessg 55
                                      +  l+er+ +le+s+ 
  gi|300712777|ref|YP_003738589.1| 62 VSDLTERVDDLEDSHT 77
                                      5678888888887765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 5.8
                                       HHHHHHHHHHHHHHHT-XXXXXXXX CS
                              SlyX  31 qqidrlqrqlrllaerlkeleessg 55 
                                       +++++ q++ r +a+ +++ +e+ +
  gi|300712777|ref|YP_003738589.1| 114 RELTANQKRARFIAKDVRDYAEKVP 138
                                       5667777777777777777766655 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00077      0.38     101     141 ..      14      54 ..       4      61 .. 0.88
   2 ?   -0.2   0.0       1.6   7.7e+02     113     135 ..     115     137 ..     109     158 .. 0.63
   3 ?    1.6   0.1      0.42   2.1e+02     115     143 ..     155     183 ..     144     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00077
                      Bacillus_HBL 101 aellellekLqeeiqqnqkevkqlikeLkklklklakdskn 141
                                       + l + +e+Lqe+++++ + ++q+++++++l+++++  s+n
  gi|300712777|ref|YP_003738589.1|  14 EALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSN 54 
                                       56788999999999999999999999999999999998887 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.6
                      Bacillus_HBL 113 eiqqnqkevkqlikeLkklklkl 135
                                       e++ nqk ++  +k+++++++k+
  gi|300712777|ref|YP_003738589.1| 115 ELTANQKRARFIAKDVRDYAEKV 137
                                       56666666666666666666554 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.42
                      Bacillus_HBL 115 qqnqkevkqlikeLkklklklakdsknFk 143
                                        + +k  +q+++ ++++ ++l kd+ + k
  gi|300712777|ref|YP_003738589.1| 155 AESKKPHTQTVARVMDFLDELGKDDIKVK 183
                                       455677789999***********986655 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   2.5     5e-05     0.025      26      88 ..      11      73 ..       4      74 .. 0.93
   2 ?   -0.8   0.1       3.7   1.8e+03      54      54 ..     149     149 ..     112     178 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5e-05
                            DUF948 26 ktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvseln 88
                                      +t++++a+t+eel++ v++  + +e+  +k+++l  +++ ++ +v      v dl+e v +l+
  gi|300712777|ref|YP_003738589.1| 11 STVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLE 73
                                      7999****************************************************9999986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.7
                            DUF948  54 a 54 
                                       +
  gi|300712777|ref|YP_003738589.1| 149 T 149
                                       1 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.067        33      22      38 ..      12      28 ..       7      38 .. 0.66
   2 ?    8.3   0.1    0.0059         3       1      36 [.      40      75 ..      40      76 .. 0.96

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.067
                         FlaC_arch 22 eneelsksveelkenVk 38
                                      + e l ++veel+e+V+
  gi|300712777|ref|YP_003738589.1| 12 TVEALAQTVEELQETVN 28
                                      45666667777777764 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0059
                         FlaC_arch  1 ridelEnklsklsteletvkkeneelsksveelken 36
                                      +i+ lE++++  s++++      ++l + v++l+++
  gi|300712777|ref|YP_003738589.1| 40 KIERLETEIEVQSSNVGGCHLRVSDLTERVDDLEDS 75
                                      89*******************************985 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.4   9.4e-05     0.047      39      88 ..       5      54 ..       1      56 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.4e-05
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              BST2 39 qaatcnqtvvtLkasLekekaqsqkqqakvqelqgeikkLnqkLqdaeae 88
                                        at ++tv+ L +  e+ +   ++q ++++++ ++i++L+ +++ ++ +
  gi|300712777|ref|YP_003738589.1|  5 ADATGSSTVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSN 54
                                      4589999*********************************9999877765 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   0.00011     0.053      63     114 ..      14      68 ..       4     168 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
                             Atg14  63 knkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk...kR 114
                                       + +++ +eel+ ++ ++ er+++  +k+++l  eie ++ ++ ++   ++   +R
  gi|300712777|ref|YP_003738589.1|  14 EALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSdltER 68 
                                       4444555555555555555555555555555555555555555555555544422 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.7   0.00022      0.11      40     112 ..      12      84 ..       4     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00022
                            CENP-Q  40 qLspelhslelLeaeiekeeralerdyeaLreLeknakaearerkeklkkehvllqesdseelslleassdev 112
                                        ++++ +++e+L++ ++++ +  e+  e++++Le++++ + ++    + +   l+++ d+ e+s+ +   + +
  gi|300712777|ref|YP_003738589.1|  12 TVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLEDSHTQPDPTGT 84 
                                       6788999*******************************99998666444446666666666666666655544 PP

>> DUF2937  Protein of unknown function (DUF2937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   0.00025      0.12      46      94 ..       2      49 ..       1      76 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00025
                           DUF2937 46 qatAkrffkgdlealiahyrqsedpvvradaesiqalverlerLeqelq 94
                                       atA++++  +  +++a++ +   + v+++ae+i++  e+ erLe+e +
  gi|300712777|ref|YP_003738589.1|  2 TATADATGS-STVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIE 49
                                      689******.6666677777777789*******************9976 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.7   0.00015     0.074      17      64 ..       5      52 ..       1     121 [. 0.73
   2 ?   -1.3   0.0       3.3   1.6e+03      71     105 ..     131     165 ..     109     193 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00015
                                      .......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                              SKA1 17 dpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieasl 64
                                       +a+ +++++++ ++v++l+e++n+  +++++++e i++l+ eie   
  gi|300712777|ref|YP_003738589.1|  5 ADATGSSTVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQS 52
                                      566778899999999999999999999999999999999999988654 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.3
                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                              SKA1  71 qhlkenlpshlpkktaassaeeskssspeeeeete 105
                                          +e++p++l  + ++ +++ ++++s++ +++t 
  gi|300712777|ref|YP_003738589.1| 131 RDYAEKVPAGLFMDSQTITKVIAAAESKKPHTQTV 165
                                       44556666665554444444443333333333333 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00038      0.19      46      96 ..     123     173 ..     116     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00038
                           ADH_N_2  46 mRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqd 96 
                                        R+  +d ++y+e v+ g  m ++++ +V++  +++ +  ++V+  +++ d
  gi|300712777|ref|YP_003738589.1| 123 ARFIAKDVRDYAEKVPAGLFMDSQTITKVIAAAESKKPHTQTVARVMDFLD 173
                                       588999************************998888888888877776655 PP

>> MatP_C  MatP C-terminal ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.6      0.28   1.4e+02      28      53 ..      16      45 ..       4      50 .. 0.57
   2 ?    7.8   0.0    0.0075       3.7      29      58 ..     145     174 ..     134     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.28
                            MatP_C 28 LSetivqL....ieeaerkekyeeqvsslk 53
                                      L +t+++L     e+aer e+ +e+++ l 
  gi|300712777|ref|YP_003738589.1| 16 LAQTVEELqetvNEQAERIEQQAEKIERLE 45
                                      444554441111345667777777777665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0075
                            MatP_C  29 SetivqLieeaerkekyeeqvsslkedLke 58 
                                       S+ti+++i  ae+k+  +++v+ + + L e
  gi|300712777|ref|YP_003738589.1| 145 SQTITKVIAAAESKKPHTQTVARVMDFLDE 174
                                       9********************998777766 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.1    0.0011      0.53      25      85 ..      13      73 ..       3      78 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0011
                           BLOC1_2 25 LeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLD 85
                                      +e+l ++++e  + ++++a+ +e+++ek+++++ e++ + +++   + +v++L+e v+ L+
  gi|300712777|ref|YP_003738589.1| 13 VEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLE 73
                                      5556666666666777777777777777777777777777777777777777777777776 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.6   0.00035      0.17      77     132 ..      12      72 ..       8      73 .. 0.88
   2 ?   -0.4   0.0       2.3   1.1e+03      83     111 ..     132     160 ..     111     180 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00035
                              COG2  77 plaaarkkvesvreklsereeeveskleeakeleekr.....ellklllkldevvekleal 132
                                        ++a+ + ve+++e ++e+ e++e++ e+ ++le +      ++  + l++++++e++++l
  gi|300712777|ref|YP_003738589.1|  12 TVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIevqssNVGGCHLRVSDLTERVDDL 72 
                                       578899999******************9999999998888888999999999999999986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.3
                              COG2  83 kkvesvreklsereeeveskleeakelee 111
                                       +  e+v + l + ++++++ +++a++ + 
  gi|300712777|ref|YP_003738589.1| 132 DYAEKVPAGLFMDSQTITKVIAAAESKKP 160
                                       22233333444555555555555555554 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   6.2   0.00063      0.32     150     186 ..      14      49 ..       1      78 [. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00063
                                       --SSSHHHHHHHTS-TTSHHHHHS--XXXXXXXXXXX CS
                    Apolipoprotein 150 erlssrveelrekleeqaeelrerleanleelkaqle 186
                                       e+l+++veel+e+++eqae +++++e+ +e+l+ ++e
  gi|300712777|ref|YP_003738589.1|  14 EALAQTVEELQETVNEQAERIEQQAEK-IERLETEIE 49 
                                       567777777777777777777777776.566665555 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.1   0.00046      0.23     101     138 ..      11      48 ..       2      78 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00046
                     Fzo_mitofusin 101 stfarlcqqvdetekeleeeikelekeiekleevqkka 138
                                       st++ l q+v+e +++++e+ +++e++ ek+e+++++ 
  gi|300712777|ref|YP_003738589.1|  11 STVEALAQTVEELQETVNEQAERIEQQAEKIERLETEI 48 
                                       45555555555555555555555555555555554443 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.5   0.00013     0.065      54     111 ..      19      76 ..      12      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00013
                              ADIP  54 qreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqkl 111
                                       + e+l+et+++    ie++  kierl+t+ e + + +   + +  +l+ ++ +le+ +
  gi|300712777|ref|YP_003738589.1|  19 TVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLEDSH 76 
                                       4578888888888899999999999999999999999999999999999988888765 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.4   0.00036      0.18      11      73 ..      12      74 ..       3      78 .. 0.68
   2 ?    0.1   0.0       1.5   7.7e+02      88     128 ..     116     156 ..     101     168 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00036
                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGG CS
                        Laminin_II 11 takevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLld 73
                                      t+++  + +++l++ +++  e +++ ++++e+ + +++  +  +      v++L++ +++L+d
  gi|300712777|ref|YP_003738589.1| 12 TVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLED 74
                                      444455556666666666666666666666666666776677777888899999999999987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.5
                                       HHHHHHHHHHHHHHHHHHHHT---EEEEES--EEEE----S CS
                        Laminin_II  88 lsdniseikelIaqARkaAnkikvsvsfdgdsivelrppek 128
                                       l +n ++ + + +  R+ A k+  +   d ++i ++    +
  gi|300712777|ref|YP_003738589.1| 116 LTANQKRARFIAKDVRDYAEKVPAGLFMDSQTITKVIAAAE 156
                                       66666777777777888888888888888888877655555 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.6       0.3   1.5e+02      26      44 ..      31      49 ..      10      56 .. 0.76
   2 ?    7.9   0.0    0.0055       2.7      28      42 ..      61      75 ..      58      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.3
                             HSBP1 26 lsriDdMssriDdLEksia 44
                                       +ri++  ++i+ LE+ i+
  gi|300712777|ref|YP_003738589.1| 31 AERIEQQAEKIERLETEIE 49
                                      5799999999999999986 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0055
                             HSBP1 28 riDdMssriDdLEks 42
                                      r+ d+++r+DdLE s
  gi|300712777|ref|YP_003738589.1| 61 RVSDLTERVDDLEDS 75
                                      899**********86 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.0    0.0018      0.91      18      59 ..      11      49 ..       7      81 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0018
                           NPV_P10 18 dkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkve 59
                                      + V+al q v+++qe +++     e++++q+++++ let++e
  gi|300712777|ref|YP_003738589.1| 11 STVEALAQTVEELQETVNE---QAERIEQQAEKIERLETEIE 49
                                      5678888888888885554...57888888888888888664 PP

>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3       3.5   1.7e+03      41      79 ..      25      41 ..       7      56 .. 0.43
   2 ?   11.4   0.1   0.00088      0.44      42      89 ..     126     175 ..     110     179 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 3.5
                                      HHHHHHHHH--.SSS.BSHHHCHHHHHHHCTS---HHHH CS
                           DUF3349 41 evaeelvaeaaeadeavdeedieelitkvteeepseedv 79
                                      e ++e +++ +++ e+                      +
  gi|300712777|ref|YP_003738589.1| 25 ETVNEQAERIEQQAEK----------------------I 41
                                      1111111111122222......................2 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00088
                                       HHHHHHHH--...SSS.BSHHHCHHHHHHHCTS---HHHHHHHHHHHHTT CS
                           DUF3349  42 vaeelvaeaa..eadeavdeedieelitkvteeepseedvarVaarLaag 89 
                                       +a+++ + a+   a   +d++ i ++i++  +++p+ + varV + L + 
  gi|300712777|ref|YP_003738589.1| 126 IAKDVRDYAEkvPAGLFMDSQTITKVIAAAESKKPHTQTVARVMDFLDEL 175
                                       45555444432345567899***********************9998765 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.2     0.001      0.51      14      55 ..       9      50 ..       2      68 .. 0.86
   2 ?   -1.8   0.0       6.5   3.2e+03      33      46 ..      63      76 ..      59      78 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.001
                           DUF2205 14 erearerLqqqakeLqssLqaLaervdeVkeehdKLesenrf 55
                                      ++ + e+L q ++eLq++ ++ aer+++  e  ++Le+e ++
  gi|300712777|ref|YP_003738589.1|  9 GSSTVEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEV 50
                                      5666799**********************99999**999665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6.5
                           DUF2205 33 qaLaervdeVkeeh 46
                                       +L ervd     h
  gi|300712777|ref|YP_003738589.1| 63 SDLTERVDDLEDSH 76
                                      57888998877666 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.8    0.0045       2.2      15      51 ..       9      45 ..       7      54 .. 0.81
   2 ?    3.2   0.6      0.15        73      17      51 ..      39      73 ..      36      77 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0045
                                      XXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
                             DivIC 15 gllaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                                      g +++ +l q +++lq++++++ +++e+ ++++++L+
  gi|300712777|ref|YP_003738589.1|  9 GSSTVEALAQTVEELQETVNEQAERIEQQAEKIERLE 45
                                      5677888999999999999999999999999999984 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.15
                                      XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
                             DivIC 17 laykqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                                       ++ +l+ ei+ +  ++   + +  +L+++v+dL+
  gi|300712777|ref|YP_003738589.1| 39 EKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLE 73
                                      55677888888888888888888889999999885 PP

>> CP12  CP12 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.2      0.02        10      19      49 ..       6      37 ..       1      45 [. 0.75
   2 ?    2.3   0.3       0.6     3e+02       3      47 ..      32      76 ..      31      82 .. 0.76
   3 ?   -0.3   0.0       3.7   1.8e+03      46      57 ..      94     105 ..      84     109 .. 0.75
   4 ?    0.9   0.0       1.6   7.8e+02       8      39 ..     147     178 ..     145     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.02
                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX- CS
                              CP12 19 kgansaecaaawdeVeeLqaeaahqrak.kke 49
                                      + + s+ + a+ ++VeeLq++  +q +  +++
  gi|300712777|ref|YP_003738589.1|  6 DATGSSTVEALAQTVEELQETVNEQAERiEQQ 37
                                      4678999**************99987732333 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.6
                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                              CP12  3 ekiekaieearevcaekgansaecaaawdeVeeLqaeaahqrakk 47
                                      e+ie++ e+++++ +e + +s+++      V +L +   + ++++
  gi|300712777|ref|YP_003738589.1| 32 ERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLEDSH 76
                                      899999999999999999999888888888888877777766644 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 3.7
                                       XXX-TTCHHHHH CS
                              CP12  46 kkkektsLeeYC 57 
                                       +++++t+Le+ C
  gi|300712777|ref|YP_003738589.1|  94 AQSDQTPLERIC 105
                                       47889****988 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 1.6
                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                              CP12   8 aieearevcaekgansaecaaawdeVeeLqae 39 
                                        i+++ ++ ++k    + +a ++d ++eL + 
  gi|300712777|ref|YP_003738589.1| 147 TITKVIAAAESKKPHTQTVARVMDFLDELGKD 178
                                       56666677777888999999999999999765 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.2    0.0057       2.8      36      98 ..      12      71 ..       2      80 .. 0.50
   2 ?    1.9   0.0      0.22   1.1e+02     173     195 ..      55      77 ..      49      99 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0057
                              HemX 36 evaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlsk 98
                                      +v++l+q++++l++++++   ++e+ ++++e+++ l++++e +++++   + +++ l++++ +
  gi|300712777|ref|YP_003738589.1| 12 TVEALAQTVEELQETVNE---QAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDD 71
                                      334444444444444444...444444444555555555555555555555555555555554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.22
                              HemX 173 rdgiilrLeqLanqvdeLpladn 195
                                       + g  lr++ L+++vd+L+  + 
  gi|300712777|ref|YP_003738589.1|  55 VGGCHLRVSDLTERVDDLEDSHT 77 
                                       66889*************75544 PP

>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.2    0.0021         1       9      47 ..      13      51 ..       9      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0021
                                      HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHH CS
                              PhoU  9 eemlddalealeekdtelarevierddeidrlekeiers 47
                                       e+l +++e l e   e a+++ ++ ++i+rle eie +
  gi|300712777|ref|YP_003738589.1| 13 VEALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQ 51
                                      5667777777777777********************866 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7   0.00086      0.43     196     263 ..      17      83 ..       2      98 .. 0.53
   2 ?    0.9   0.2      0.59     3e+02     192     259 ..     119     186 ..      91     189 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00086
                         Phage_GPO 196 fadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktdakekqrpeatG 263
                                       ++ vee  e+v e++++++++ e+ ++le+e++  +++v   + ++++L+e+++  ++++ ++p  tG
  gi|300712777|ref|YP_003738589.1|  17 AQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLEDSH-TQPDPTG 83 
                                       222233333333333333333333335666666666666666669999999999887744.4455555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.59
                         Phage_GPO 192 ddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktdakekqrp 259
                                       +++r+  + + v + Ae+v +     +++ ++  ++a+ kk ++++ a++ ++ ++L k+d k k+r+
  gi|300712777|ref|YP_003738589.1| 119 NQKRARFIAKDVRDYAEKVPAGLFMDSQTITKVIAAAESKKPHTQTVARVMDFLDELGKDDIKVKKRQ 186
                                       33333334444444444443322222222233444455555566666677777778888887777776 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   6.1   0.00095      0.47      84     144 ..      14      74 ..       4      79 .. 0.51
   2 ?    1.4   0.1      0.64   3.2e+02      26      97 ..      64     123 ..      59     139 .. 0.47
   3 ?   -2.2   0.0       8.1     4e+03      91     121 ..     155     185 ..     142     188 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00095
                             ATG16  84 aqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdree 144
                                        +l + ++el+ + +e a+r+ +  e++++le++++ +++++   + ++++l+++++d+e+
  gi|300712777|ref|YP_003738589.1|  14 EALAQTVEELQETVNEQAERIEQQAEKIERLETEIEVQSSNVGGCHLRVSDLTERVDDLED 74 
                                       3333344444444455555555555555555555555555555555555555555555544 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.64
                             ATG16  26 rLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksr 97 
                                       +L +r++ le+ + +  +  ++a             +++++qs+++  ++i  l + ++    el++ +k+ 
  gi|300712777|ref|YP_003738589.1|  64 DLTERVDDLEDSHTQPDPTGTTAGD----------GRETSAQSDQTPLERICGLPEHIVD--RELTANQKRA 123
                                       4455555555555444333222222..........2222222334455555555555554..5555555555 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 8.1
                             ATG16  91 aelyksrgelaqrllelneelqkleeklked 121
                                       ae+ k ++++  r+ +  +el k++ k k++
  gi|300712777|ref|YP_003738589.1| 155 AESKKPHTQTVARVMDFLDELGKDDIKVKKR 185
                                       5666666667777777777777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1940  (0.108205); expected 358.6 (0.02)
Passed bias filter:                     1249  (0.0696637); expected 358.6 (0.02)
Passed Vit filter:                       245  (0.013665); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 1414.80
//
Query:       gi|300712778|ref|YP_003738590.1|  [L=78]
Description: hypothetical protein HacjB3_17283 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.063   13.3   0.0      0.063   13.3   0.0    1.2  1  TBPIP_N   TBP-interacting protein N-terminus


Domain annotation for each model (and alignments):
>> TBPIP_N  TBP-interacting protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.5e-06     0.063      25      67 ..      33      75 ..       9      78 .] 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-06
                                      EETTEEEEEETTT--EEEEEE-SSHHHHHHHS.S---SSEEEE CS
                           TBPIP_N 25 iedslitgihkksnlklvidvakskeeadklaqkkevnnlmvv 67
                                      +++s +t +    +  ++idva++ke a  l + ke +++ +v
  gi|300712778|ref|YP_003738590.1| 33 LSGSELTDLDLDIGDTIEIDVADTKEIAHALINSKESDQFLIV 75
                                      56777777777778899********************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 553.96
//
Query:       gi|300712779|ref|YP_003738591.1|  [L=1383]
Description: putative restriction/modification enzyme [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-15   55.6   0.0    1.4e-14   54.2   0.0    1.8  1  TaqI_C    TaqI-like C-terminal specificity domain
      7e-09   36.1   0.0    2.6e-08   34.3   0.0    2.0  1  Eco57I    Eco57I restriction-modification methylase
    4.1e-08   32.9   0.0    1.6e-05   24.3   0.1    3.4  2  N6_Mtase  N-6 DNA Methylase
     0.0016   18.1   0.0       0.16   11.6   0.0    2.5  2  UPF0020   Putative RNA methylase family UPF0020
     0.0047   16.9   0.0       0.17   11.8   0.0    2.8  2  HSDR_N    Type I restriction enzyme R protein N terminus (HSD
  ------ inclusion threshold ------
      0.021   14.8   0.0       0.18   11.8   0.0    2.4  1  HSDR_N_2  Type I restriction enzyme R protein N terminus (HSD


Domain annotation for each model (and alignments):
>> TaqI_C  TaqI-like C-terminal specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   4.6e-18   1.4e-14       3     120 .]     994    1115 ..     992    1115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 4.6e-18
                            TaqI_C    3 llkGkdikrysieikgnYldlikkklkneka.....kelfeekpKilvrdiskkldaaydekayyvlntlyllia 72  
                                        +  G +i+ry+i+ ++++l+   +++ +         ++ e ++Kil+r+++++l+ a+d+++ y+ ++++    
  gi|300712779|ref|YP_003738591.1|  994 YVGGGEIERYQISPENKWLRHDYESFVEGDIviqvyPNYTEVDEKILTRQTADTLVGAIDTNELYTAKSVHTTLL 1068
                                        67799**********999999999988888677777999999*************************99999997 PP

                            TaqI_C   73 kdelevslkyllgiLNSklikfyykkiystlrggysrlkrkeleklPi 120 
                                        ++++ ++l+++l+++NS+++ + y++ + ++ + ++++ + el++lPi
  gi|300712779|ref|YP_003738591.1| 1069 NHDK-YNLWFVLSLMNSSVLRYVYRSRSGEEGRTFAQVRIHELRDLPI 1115
                                        7777.******************************************9 PP

>> Eco57I  Eco57I restriction-modification methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   8.8e-12   2.6e-08       3      91 ..     786     881 ..     784     893 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 8.8e-12
                            Eco57I   3 fdviiGNPPYqeseakkelkaleek.......akdiyqkFvekalkle..dkylaliiparflasgkglkefrekll 70 
                                       fd+iiGNPPY  + ++   +  +++        +d+++ Fv++  ++    ++ + iip+  l +gk  +efr++  
  gi|300712779|ref|YP_003738591.1| 786 FDAIIGNPPYGDILDETAKRYCRKQgigfeseRADVFTAFVALPEHILsiGGAWSYIIPNTPL-KGKQYQEFRRSNS 861
                                       9*********7654322222222223455555**************998889999********.9************ PP

                            Eco57I  71 kdkklkklvefedskevFkdv 91 
                                       +  +++++v+f ds  vF++ 
  gi|300712779|ref|YP_003738591.1| 862 QRYTIQEIVDFGDSY-VFDEE 881
                                       **************9.99764 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   5.4e-09   1.6e-05      21     132 ..     476     644 ..     467     647 .. 0.89
   2 ?    3.6   0.0     0.011        34     124     213 ..     784     872 ..     766     895 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 5.4e-09
                          N6_Mtase  21 egksgGeffTPrevsklivell...............................epksgesvyDpacGsggllvqaek 66 
                                       e k +G ++TP+ v++ ive +                               e   + +++Dpa+Gsg +l ++ +
  gi|300712779|ref|YP_003738591.1| 476 ERKATGSYYTPEYVVEYIVENTlgpliddiyedllardpfdkegggqfaqdfaERVFNLKILDPAMGSGHFLTNSVN 552
                                       66889**************98889999********************9999888888889***************** PP

                          N6_Mtase  67 vlkee..........................dgktkelsiyGqeknettyrLakmNlllhgieykkvkirlgdtlek 117
                                       +l ++                            k  +  iyG+++n+ +++Lak+ l l+  + ++  + l+  l++
  gi|300712779|ref|YP_003738591.1| 553 YLARQiieaqqrqdeqmdekttdehrdinwaRRKVAQRCIYGVDLNPLATELAKVSLWLRTLAAEQPLAFLDHHLKT 629
                                       **999***********************9999999999**********************99988777777777777 PP

                          N6_Mtase 118 pkfekdkkfdvvvaN 132
                                        ++   + ++ v+aN
  gi|300712779|ref|YP_003738591.1| 630 GNSLVGSDIENVLAN 644
                                       666666666666666 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.011
                          N6_Mtase 124 kkfdvvvaNppfnqkewkektlekderfreavapksnad..lafllhiieslkpkGraavvlangvLfrggkegkIr 198
                                       + fd+++ Npp+++    ++t ++  r + +  +++ ad  +af+ +  + l+ +G  + +++n  L +g + ++ r
  gi|300712779|ref|YP_003738591.1| 784 SGFDAIIGNPPYGDI--LDETAKRYCRKQGIGFESERADvfTAFVALPEHILSIGGAWSYIIPNTPL-KGKQYQEFR 857
                                       679**********98..55555555544444444455552246888888888888888888877766.455566666 PP

                          N6_Mtase 199 kalvekdlveavial 213
                                       +   +   ++ ++ +
  gi|300712779|ref|YP_003738591.1| 858 RSNSQRYTIQEIVDF 872
                                       666666666666655 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.015        46      31      93 ..     535     606 ..     528     618 .. 0.67
   2 !   11.6   0.0   5.4e-05      0.16      99     138 ..     765     802 ..     712     806 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.015
                                       -EEETT-TTSHHHHHHHH.HHTT--TTTT----SS......HHHHHHHHHHHH--..EEEEES-HHHHHHHH CS
                           UPF0020  31 pllDPmCGsGtilIEaal.lganiapgllrefvle......lkaeaeeearaelk..lygsDldrrvvqgar 93 
                                       ++lDP  GsG +l      l+++i+  + r+           ++ ++ + r+ ++  +yg+Dl++ +++ a+
  gi|300712779|ref|YP_003738591.1| 535 KILDPAMGSGHFLTNSVNyLARQIIEAQQRQDEQMdekttdEHRDINWARRKVAQrcIYGVDLNPLATELAK 606
                                       69***********99875155666644444443335555543333333333334468******998888877 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.4e-05
                                       TT-GGGEEEEE--GGG--STTS---EEEE----------H CS
                           UPF0020  99 agvgdliefsqadaakLrlkegevdvivtnpPYGerlgsk 138
                                        +++  ++f++ d + ++  +  +d+i++npPYG+ l+++
  gi|300712779|ref|YP_003738591.1| 765 WELEFPVAFYKTDGTRIE-GS-GFDAIIGNPPYGDILDET 802
                                       566778999999999999.77.5***********988875 PP

>> HSDR_N  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.013        38       2      38 ..      58      97 ..      57     111 .. 0.75
   2 !   11.8   0.0   5.6e-05      0.17     117     191 ..      84     178 ..      77     180 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.013
                                      SSHHHHHH.HHHHHHHHTT-EE.................. CS
                            HSDR_N  2 lsEaeleqelidellrelGyqvlskkdveiegrrpe...v 38
                                       +E++leq++i +++++lG  ++ ++ ve  +rrp     
  gi|300712779|ref|YP_003738591.1| 58 RNESQLEQKFIRPMFQRLGIPFEVEETVEQGQRRPDygfF 97
                                      69*****************999988888877777665552 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 5.6e-05
                                       S.SSS---EEEEEEET..................TEEEEEEEE--TT.-HHHHHHHHTSS---.---SSSGGGGG-. CS
                            HSDR_N 117 t.gnqkrrpDivlfvn..................glplvviElKrpg.tieeAinQikryrkeksdvsipqlfrYl. 172
                                       t ++++rrpD+  f+                   +  ++v+ +Kr g +    ++  + ++k+  +++ +q+ +Yl 
  gi|300712779|ref|YP_003738591.1|  84 TvEQGQRRPDYGFFESdkaaenafkrrneggdfyEYAIAVADAKRWGrK----LD-TRGKKKRDYENPSHQIDQYLr 155
                                       2688999*******99999999********999999*********7422....11.222222223333899999999 PP

                                       ....-EEEEE-SS-EEEEE--SS CS
                            HSDR_N 173 ....qfgvisngketrfyaktkr 191
                                           ++gv++ng ++r+y ++++
  gi|300712779|ref|YP_003738591.1| 156 ktstRWGVLTNGQKWRLYYRPTS 178
                                       999**************988775 PP

>> HSDR_N_2  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     6e-05      0.18      64      99 ..     143     178 ..      59     189 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
                          HSDR_N_2  64 seevleqlksYlealkaeylvvtNglehivykvdkk 99 
                                        e+   q+ +Yl+ ++ +++v+tNg++  +y   ++
  gi|300712779|ref|YP_003738591.1| 143 YENPSHQIDQYLRKTSTRWGVLTNGQKWRLYYRPTS 178
                                       445678********************9998885433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.45
# Mc/sec: 9327.89
//
Query:       gi|300712780|ref|YP_003738592.1|  [L=980]
Description: helicase domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-22   80.1   0.0    9.4e-22   77.5   0.0    2.3  2  Helicase_C  Helicase conserved C-terminal domain
    7.3e-19   67.7   0.0    5.1e-17   61.6   0.0    2.2  1  SNF2_N      SNF2 family N-terminal domain
    3.1e-12   46.8   0.6    6.3e-12   45.8   0.0    1.9  2  ResIII      Type III restriction enzyme, res subunit
    1.2e-06   27.8   0.0    1.2e-06   27.8   0.0    3.0  3  RapA_C      RNA polymerase recycling family C-terminal
    8.1e-06   25.7   0.0    2.1e-05   24.3   0.0    1.7  1  DEAD        DEAD/DEAH box helicase
    0.00081   18.4   0.1     0.0022   16.9   0.1    1.7  1  AAA_34      P-loop containing NTP hydrolase pore-1


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.93   2.8e+03       8      63 ..     138     193 ..     134     225 .. 0.72
   2 !   77.5   0.0   3.2e-25   9.4e-22       7     111 .]     475     576 ..     466     576 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.93
                                       HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH CS
                        Helicase_C   8 ellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn 63 
                                       e+l  + + +++li+++    ++  + l+ek++ +++ ++ ++ q  r+   +q  
  gi|300712780|ref|YP_003738592.1| 138 EELIARGRAERVLIVAPAPLAVQWQEELREKFDRNFVLYDRNTVQAYRQSHPNQNV 193
                                       44457888888999988888886688888999999999988888887776555544 PP

  == domain 2  score: 77.5 bits;  conditional E-value: 3.2e-25
                                       HHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSST CS
                        Helicase_C   7 lellkleeeggkilifvntidrlekvklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGid 81 
                                        ++l  e  ++kilif++++d+l   k+l+ +   +  +a ++g+l+q+ r++ +e+f ++e ++++atd+a++G++
  gi|300712780|ref|YP_003738592.1| 475 ERIL-AEDPDEKILIFTEYTDTL---KYLRDTVfpEHDIAQVYGDLEQERRRREMEKF-ENEANLMLATDAAQEGLN 546
                                       3445.7899**************...8995544799**********************.7899************** PP

                                       STTESEEEESSSSSSHHHHHHHHTTSSSTT CS
                        Helicase_C  82 ipkvnlVinfdlprnvtsyiqriGRtgRag 111
                                       ++ ++ ++n+dlp+n+ ++ qr+GR +R+g
  gi|300712780|ref|YP_003738592.1| 547 LQFAHIMVNYDLPWNPIRIDQRMGRLHRYG 576
                                       ****************************86 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   1.7e-20   5.1e-17      60     323 ..     121     365 ..     119     391 .. 0.77

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.7e-20
                                       E---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-- CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                            SNF2_N  60 LaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmk 136
                                         De GLGKT+++  +i ++ a    ++e+         +Liv+Pa l+ qW++e+++   +     + y+ ++ + 
  gi|300712780|ref|YP_003738592.1| 121 VGDEVGLGKTIEAGIVIEELIA--RGRAER---------VLIVAPAPLAVQWQEELREKFDRNF---VLYDRNTVQA 183
                                       57***********999994444..334444.........9********************9995...4778878889 PP

                                       ---------------EEEE-HHHHHHHT......TTS-S-S..-SEEEES-GGGT--T......T.SHHHHHHHH-- CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx......x.xxxxxxxxxxx RF
                            SNF2_N 137 kkntkvapklladydvvittYdvlsreaelqkkrsvlkqve..wkrvvlDEghtlkns......t.skaaeavskLs 204
                                        ++++  +++ ++ d +it+ d  +++     + ++l ++e  w+  v DE+h l         t +  + +v + +
  gi|300712780|ref|YP_003738592.1| 184 YRQSHPNQNVWQQEDRIITSIDFAKQDD----VLEALRNLEeeWDIAVFDEAHHLTARrssddsTeRTQRYMVGEAV 256
                                       9999999******************888....67777766555************9885555442433333333322 PP

                                       ...-S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHHHHHHHHHHHHHTT-STTEE---GGGT.. CS
                                       ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
                            SNF2_N 205 ...tsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpieaqaekgrsrLlqllqrlmlrrakkdv.. 276
                                          ++  ++ltGTP + +   +y L+++L +  f++    ++++ +p             + l+ lm+rr k+d+  
  gi|300712780|ref|YP_003738592.1| 257 annSDALLLLTGTPHKGKSDQFYHLVSLLDPYRFSH----ESQI-TP-------------EGLEDLMIRRLKDDMye 315
                                       13377889*********************9988882....2222.23.............347899********998 PP

                                       ...--S---EEEEEEEEE--HHHHHHHH....................HH CS
                                       ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                            SNF2_N 277 ...eknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaal 323
                                          ++ +P+k+ e + ++++++er++Yn++ e+ r+   +   ++++aa 
  gi|300712780|ref|YP_003738592.1| 316 tdgTRMFPEKNIEALPVEMTPEERELYNNVTEYIREYYNLAQNEENQAAG 365
                                       776778**********************9999998887777777766655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   2.1e-15   6.3e-12       2     170 ..      98     271 ..      97     272 .. 0.73
   2 ?   -3.6   0.3       3.2   9.6e+03      73     118 ..     878     926 ..     872     959 .. 0.49

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.1e-15
                                       -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGT CS
                            ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkfl 78 
                                       +e+ +yQ +a  ++l+++    d+r+l+  + G GKT+ a  +ie+l   g+ e++l+++p   l  q++ee+++ +
  gi|300712780|ref|YP_003738592.1|  98 IEIEPYQVQAAYEILNSY----DHRYLVGDEVGLGKTIEAGIVIEELIARGRAERVLIVAPAP-LAVQWQEELREKF 169
                                       6889***********887....6*************************************975.7777776665555 PP

                                       GG........GEEEESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..... CS
                            ResIII  79 seayke....igkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.... 147
                                       + ++      + + +++ +   +++  ++ + ++t+i+ +++d      e  ++l+++ d+ ++DEaH+l+a     
  gi|300712780|ref|YP_003738592.1| 170 DRNFVLydrnTVQAYRQSHP--NQNVWQQEDRIITSIDFAKQDD---VLEALRNLEEEWDIAVFDEAHHLTARrssd 241
                                       55432232112233333332..3455677777888999888888...88999********************96655 PP

                                       T........TTHHHHHT---SEEEEEESS-S CS
                            ResIII 148 k........swreilekfkeavllglTATpe 170
                                       +         + e++ + ++  ll lT+Tp 
  gi|300712780|ref|YP_003738592.1| 242 DstertqryMVGEAVAN-NSDALLLLTGTPH 271
                                       14554444433333333.3456777899996 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
                                       HGGGGTGG........GEEEESSS-B--..........-SEEEEEHHHHHHTH CS
                            ResIII  73 efkkflseayke....igkkvsgdkkka...kekdstnkkilvttiqsldads 118
                                       e+++f++ea++e    ig k +     a   +  ++++++  ++t+q+  ++ 
  gi|300712780|ref|YP_003738592.1| 878 EVESFADEARTErereIGIKREH----AeryFTDQIEEWEERLETYQQRAEQG 926
                                       55555555555533221111111....11234555666666666666554444 PP

>> RapA_C  RNA polymerase recycling family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.2      0.12   3.6e+02     265     329 ..     396     464 ..     373     478 .. 0.65
   2 !   27.8   0.0     4e-10   1.2e-06     155     209 ..     747     803 ..     626     811 .. 0.83
   3 ?   -2.8   3.2      0.79   2.4e+03     270     347 ..     877     956 ..     845     962 .. 0.49

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.12
                                       STTSSTTSSS-SHHHHTTTTTTTTSSSHHHHHHHHHHHHHH.....HHHHHHHTHHHHTHHHH--S--SS CS
                            RapA_C 265 kklarklvkakrkeiekllkkaeklaeeqaeelieeakara.....eqelsaEleRLeaLkavNpnirde 329
                                         +a++l   +++ i++  ++ e+l +++ +++ eea +++     +++++aEl R ++L ++ ++i+ +
  gi|300712780|ref|YP_003738592.1| 396 DAVAEDLPDDVQELIPRYSTEPETLTDAERARV-EEALEHVtitlnRSQIDAELGRVKQLWRQAKAIETD 464
                                       456667777777777777666666666555444.344444312222578899999999999999988765 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 4e-10
                                       -S-HHHHTTS-S---STTSTHHHHHHHHHTT--SSS..SB--S-S-SSS-S--S--- CS
                            RapA_C 155 tvTfdRetAlareDvqFltwehPlvrgaldlilsse..lGnaavallknkalpagtl 209
                                       t+Tf  + A++ ++v+F+  +hPlv++++d  l+s+   G+ av + +n+++ +g l
  gi|300712780|ref|YP_003738592.1| 747 TATFTKDVAMEEDEVDFIALDHPLVQSLIDYCLDSNrvQGQIAVKVASNPEVTSGIL 803
                                       89*******************************987336*******99999988866 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.79
                                       TTSSS-SHHHHTTTTTTTTSSSHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHH--S-..-SSSHHHHTTTHHHHTTT CS
                            RapA_C 270 klvkakrkeiekllkkaeklaeeqaeelieeakaraeqelsaEleRLeaLkavNpni..rdeeiealeeqreellea 344
                                       + v++ ++e ++  ++   + +e+ae+  ++  ++ e++l++  +R e+   + + i   ++e+e+l+ qr++ l++
  gi|300712780|ref|YP_003738592.1| 877 DEVESFADEARTEREREIGIKREHAERYFTDQIEEWEERLETYQQRAEQGTDMSAPIgnAQRELEQLRRQRDKELSQ 953
                                       33333333333333333334444444444444444444444444444444444444422245666666666666666 PP

                                       TT- CS
                            RapA_C 345 ldq 347
                                       l++
  gi|300712780|ref|YP_003738592.1| 954 LEE 956
                                       654 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   7.1e-09   2.1e-05       2     171 ..     102     272 ..     101     277 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.1e-09
                                       HHHHHHHHHHH..TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTT.... CS
                                       xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
                              DEAD   2 diQaeaiplil..gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkk.... 72 
                                       ++Q +a  +il   ++  lv  e+G GKT  + i + + ++   + ++ ++liv+P   La q  ++l++ ++    
  gi|300712780|ref|YP_003738592.1| 102 PYQVQAAYEILnsYDHRYLVGDEVGLGKTIEAGIVIEELIA---RGRAERVLIVAPA-PLAVQWQEELREKFDrnfv 174
                                       678888888885556899****************9998885...57777*******6.8*********999993322 PP

                                       TSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEEHHHHHHHHHCTSSH.CTTEEEEEEETHHHHHHTTTHHHHHHHHH CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              DEAD  73 yidlrvlliiggvaardqlskldng.vdivvgtpgrlddllstgkln.lsqvrflVlDEadrlldqgfsdfinriln 147
                                        +d +++  +   + + ++++ +++   i+     + dd+l+  + n  ++  + V+DEa+ l     sd+  +  +
  gi|300712780|ref|YP_003738592.1| 175 LYDRNTVQAYR--QSHPNQNVWQQEdRIITSIDFAKQDDVLEALR-NlEEEWDIAVFDEAHHLTARRSSDDSTERTQ 248
                                       12222222233..33334444433312223333345555554333.3146789************966665555344 PP

                                       HSHHHCTTST.TTSEEEEEESSBSH CS
                                       xxxxxxxxxx.xxxxxxxxxxxxxx RF
                              DEAD 148 qlpqitcdgk.lqrqvivlSATlpk 171
                                       +     +    ++  +++l+ T++k
  gi|300712780|ref|YP_003738592.1| 249 RYM-VGEAVAnNSDALLLLTGTPHK 272
                                       432.333333245559999999884 PP

>> AAA_34  P-loop containing NTP hydrolase pore-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   7.4e-07    0.0022      41     195 ..      98     245 ..      55     264 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.4e-07
                            AAA_34  41 leavvyacqrheellpdgkRaGfllGDgaGvGkgrqiagiilenllqgrkkavwvsvsedLkeDaerDlkdigasei 117
                                       +e   y +q+  e+l++   + +l+GD+ G+Gk+ + + +i e +++gr   v +   + L    + +l++   ++ 
  gi|300712780|ref|YP_003738592.1|  98 IEIEPYQVQAAYEILNSY-DHRYLVGDEVGLGKTIEAGIVIEELIARGRAERVLIVAPAPLAVQWQEELREKFDRNF 173
                                       555556666666666544.4569*************9999999999***********************99888888 PP

                            AAA_34 118 evvalnklkegkkikeseelkeGvlFvtYstliseskkkkksrleqlveWlgedfdGvivfDEchkaknlakseekk 194
                                        ++  n++++ ++     + ++  ++      i++ +  k+  + + ++ l+e++d + vfDE+h++    +s++++
  gi|300712780|ref|YP_003738592.1| 174 VLYDRNTVQAYRQS----HPNQN-VWQQEDRIITSIDFAKQDDVLEALRNLEEEWD-IAVFDEAHHLTARRSSDDST 244
                                       88888888877444....33333.34444444444444344455555666888888.88999999988777655333 PP

                            AAA_34 195 a 195
                                       +
  gi|300712780|ref|YP_003738592.1| 245 E 245
                                       3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1202  (0.0670422); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.30s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 6502.30
//
Query:       gi|300712781|ref|YP_003738593.1|  [L=121]
Description: hypothetical protein HacjB3_17298 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 915.55
//
Query:       gi|300712782|ref|YP_003738594.1|  [L=185]
Description: hypothetical protein HacjB3_17303 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1265.81
//
Query:       gi|300712783|ref|YP_003738595.1|  [L=39]
Description: hypothetical protein HacjB3_17308 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-05   26.0   2.1    1.3e-05   25.9   2.1    1.0  1  VAPB_antitox  Putative antitoxin
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.11   12.3   0.0    1.0  1  DUF3862       Domain of Unknown Function with PDB structure (


Domain annotation for each model (and alignments):
>> VAPB_antitox  Putative antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   2.1   1.4e-09   1.3e-05       2      35 ..       5      38 ..       4      39 .] 0.93

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.4e-09
                      VAPB_antitox  2 tIsIsdevYekLkklKregeSFsdvIerLlekkk 35
                                      +Is+s+   ++L ++K+ geS+ dvI rL+e+++
  gi|300712783|ref|YP_003738595.1|  5 SISVSEKLADELYDRKKRGESYEDVIWRLIEESE 38
                                      69****************************9875 PP

>> DUF3862  Domain of Unknown Function with PDB structure (DUF3862)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.3e-05      0.11      84     110 ..       9      35 ..       2      38 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
                                       ---B-HHHHHH--TT-BHHHHHHHH-- CS
                           DUF3862  84 eaklskkdydslkkGmsyedvvkklge 110
                                       + kl  + yd+ k+G+syedv  +l e
  gi|300712783|ref|YP_003738595.1|   9 SEKLADELYDRKKRGESYEDVIWRLIE 35 
                                       67899999*************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 305.52
//
Query:       gi|300712784|ref|YP_003738596.1|  [L=189]
Description: hypothetical protein HacjB3_17313 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.7   0.7      0.043   13.8   0.1    1.8  2  DUF910    Bacterial protein of unknown function (DUF910)
      0.031   14.0   0.6      0.031   14.0   0.6    3.9  5  SHOCT     Short C-terminal domain


Domain annotation for each model (and alignments):
>> DUF910  Bacterial protein of unknown function (DUF910)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.2   1.1e+04      26      34 ..      52      60 ..      50      61 .. 0.82
   2 ?   13.8   0.1   4.7e-06     0.043      27      53 ..     159     185 ..     152     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.2
                                      HHHHHHHHH CS
                            DUF910 26 dlelmeiEl 34
                                      d+ l+ +El
  gi|300712784|ref|YP_003738596.1| 52 DISLILEEL 60
                                      899999997 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.7e-06
                                       HHHHHHHHHHHHHTTSS-HHHHHHHHH CS
                            DUF910  27 lelmeiElkeLykaglidkkeYltAkl 53 
                                       + l  +El++L +ag+i+++eY++A l
  gi|300712784|ref|YP_003738596.1| 159 MTLSDDELDQLRSAGFISREEYAEAIL 185
                                       567889*****************9965 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.85   7.6e+03      16      23 ..      14      21 ..      14      21 .. 0.81
   2 ?   -0.4   0.5      0.12   1.1e+03      17      24 ..      27      34 ..      27      35 .. 0.82
   3 ?   -2.8   0.0      0.66   5.9e+03       2       8 ..      61      67 ..      61      68 .. 0.83
   4 ?   -0.3   0.1      0.11   9.5e+02       1       8 [.     148     155 ..     148     156 .. 0.89
   5 ?   14.0   0.6   3.4e-06     0.031       5      22 ..     165     182 ..     164     183 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.85
                             SHOCT 16 teEEFeak 23
                                      t+ EF ++
  gi|300712784|ref|YP_003738596.1| 14 TQREFLRM 21
                                      78899886 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.12
                             SHOCT 17 eEEFeakK 24
                                      eEEF ++ 
  gi|300712784|ref|YP_003738596.1| 27 EEEFTKQL 34
                                      8***9876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.66
                             SHOCT  2 aLekLke 8 
                                      ++e Lke
  gi|300712784|ref|YP_003738596.1| 61 PIEDLKE 67
                                      6899998 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.11
                             SHOCT   1 daLekLke 8  
                                       d+Le+L+e
  gi|300712784|ref|YP_003738596.1| 148 DPLEELAE 155
                                       89****98 PP

  == domain 5  score: 14.0 bits;  conditional E-value: 3.4e-06
                             SHOCT   5 kLkeLyarGeIteEEFea 22 
                                       +L++L+ +G I++EE+ +
  gi|300712784|ref|YP_003738596.1| 165 ELDQLRSAGFISREEYAE 182
                                       8***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1358.96
//
Query:       gi|300712785|ref|YP_003738597.1|  [L=50]
Description: hypothetical protein HacjB3_17318 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 394.47
//
Query:       gi|300712786|ref|YP_003738598.1|  [L=150]
Description: hypothetical protein HacjB3_17323 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1114.09
//
Query:       gi|300712787|ref|YP_003738599.1|  [L=32]
Description: hypothetical protein HacjB3_17328 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       105  (0.00585643); expected 358.6 (0.02)
Passed bias filter:                       96  (0.00535445); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 240.40
//
Query:       gi|300712788|ref|YP_003738600.1|  [L=223]
Description: hypothetical protein HacjB3_17333 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00019   21.1   2.4       0.37   10.3   3.9    2.1  2  Vps5            Vps5 C terminal like
    0.00031   19.6   4.0    0.00046   19.1   4.0    1.2  1  Tektin          Tektin family
    0.00039   20.9   8.5     0.0007   20.1   8.5    1.4  1  APG6_N          Apg6 coiled-coil region
    0.00064   19.5   2.7     0.0015   18.4   2.8    1.5  1  Phage_GP20      Phage minor structural protein GP20
     0.0014   18.7   1.5     0.0027   17.8   1.5    1.4  1  Laminin_II      Laminin Domain II
     0.0017   17.7   3.8     0.0026   17.1   3.8    1.2  1  DUF3450         Protein of unknown function (DUF3450)
     0.0036   16.6   2.4     0.0043   16.4   2.4    1.2  1  FmiP_Thoc5      Fms-interacting protein/Thoc5
     0.0037   16.2   3.5     0.0045   15.9   3.5    1.1  1  Spc7            Spc7 kinetochore protein
     0.0063   15.9   3.7     0.0063   15.9   3.7    1.4  1  Rab5-bind       Rabaptin-like protein
     0.0074   16.5   5.2      0.014   15.6   5.2    1.6  1  Jnk-SapK_ap_N   JNK_SAPK-associated protein-1
     0.0075   16.4   5.9      0.012   15.7   5.9    1.3  1  ADIP            Afadin- and alpha -actinin-Binding
     0.0088   16.6   1.0      0.015   15.8   1.0    1.5  1  Syntaxin-6_N    Syntaxin 6, N-terminal
     0.0092   16.1  12.0      0.031   14.4  12.2    1.8  1  Tropomyosin_1   Tropomyosin like
     0.0096   15.7   0.5      0.016   15.0   0.5    1.3  1  Lectin_N        Hepatic lectin, N-terminal domain
  ------ inclusion threshold ------
      0.014   14.0   0.9      0.018   13.7   0.9    1.1  1  FapA            Flagellar Assembly Protein A
      0.014   15.4  11.5      0.027   14.5  11.5    1.4  1  DHR10           Designed helical repeat protein 10 domain
      0.016   15.6   8.8      0.026   14.9   8.8    1.3  1  DUF737          Protein of unknown function (DUF737)
      0.019   14.5   4.0      0.025   14.2   4.0    1.1  1  HAUS-augmin3    HAUS augmin-like complex subunit 3
      0.022   14.2   0.1      0.034   13.6   0.1    1.2  1  Mce4_CUP1       Cholesterol uptake porter CUP1 of Mce4, putat
      0.023   13.6   1.2      0.028   13.3   1.2    1.1  1  Fmp27_WPPW      RNA pol II promoter Fmp27 protein domain
      0.024   14.7   2.4      0.035   14.1   2.4    1.3  1  DUF1664         Protein of unknown function (DUF1664)
      0.025   13.9   6.1      0.034   13.5   6.1    1.2  1  GAS             Growth-arrest specific micro-tubule binding
       0.04   13.9   9.5       0.28   11.1   3.0    2.3  2  Prefoldin_2     Prefoldin subunit
      0.045   14.2  10.5       0.09   13.2  10.5    1.4  1  ZapB            Cell division protein ZapB
       0.07   13.2   3.8      0.098   12.8   3.8    1.2  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
       0.07   11.8   1.7      0.087   11.5   1.7    1.1  1  AAA_13          AAA domain
      0.083   12.1   0.0        0.1   11.9   0.0    1.1  1  TMPIT           TMPIT-like protein
      0.099   12.7  11.4       0.19   11.7  11.3    1.6  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.11   13.0   3.8       0.16   12.5   3.8    1.4  1  AAA_23          AAA domain
       0.13   10.8   2.0       0.15   10.5   2.0    1.1  1  Macoilin        Macoilin family
       0.14   12.6   5.1       0.23   11.9   5.1    1.3  1  CENP-H          Centromere protein H (CENP-H)
       0.14   12.1   4.7       0.24   11.3   4.7    1.4  1  Lipoprotein_20  YfhG lipoprotein
       0.14   12.2   0.3        9.8    6.3   0.1    2.3  2  DUF916          Bacterial protein of unknown function (DUF916
       0.14   11.0   3.0       0.19   10.5   3.0    1.1  1  FemAB           FemAB family
       0.16   11.3   0.1       0.18   11.1   0.1    1.1  1  TraF_2          F plasmid transfer operon, TraF, protein
       0.17   12.2   6.9       0.43   10.8   6.9    1.7  1  Seryl_tRNA_N    Seryl-tRNA synthetase N-terminal domain
       0.17   11.3   9.5       0.25   10.7   9.5    1.3  1  DUF3552         Domain of unknown function (DUF3552)
       0.19   12.2   1.4       0.54   10.8   1.4    1.9  1  NPV_P10         Nucleopolyhedrovirus P10 protein
       0.21   11.8   8.9       0.23   11.6   8.0    1.5  2  CENP-Q          CENP-Q, a CENPA-CAD centromere complex subuni
       0.23   11.2   3.4       0.36   10.6   3.4    1.3  1  DUF724          Protein of unknown function (DUF724)
       0.25   11.0   5.8       0.27   10.8   4.7    1.6  2  DUF2968         Protein of unknown function (DUF2968)
       0.25   10.7   1.7        0.3   10.4   1.7    1.2  1  DUF4407         Domain of unknown function (DUF4407)
       0.27   11.3   3.0        0.4   10.8   3.0    1.2  1  DUF4337         Domain of unknown function (DUF4337)
       0.28   11.4   9.8       0.33   11.2   3.3    2.4  2  XhlA            Haemolysin XhlA
       0.29   11.8   7.6        1.1    9.9   7.6    2.0  1  KfrA_N          Plasmid replication region DNA-binding N-term
        0.3   11.3  11.8       0.45   10.7  11.5    1.4  1  ATG16           Autophagy protein 16 (ATG16)
       0.31   10.1   1.1       0.41    9.7   1.1    1.1  1  PHTB1_C         PTHB1 C-terminus
       0.32   11.1   9.9       0.87    9.7   9.9    1.7  1  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
       0.42   10.6   9.9       0.84    9.7   9.9    1.5  1  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
       0.59    8.8   5.9        1.4    7.6   5.9    1.5  1  DUF773          CDK5 regulatory subunit-associated protein 3
        1.2    8.2   3.8        1.5    7.8   3.8    1.1  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
        1.4    8.8   6.1        2.2    8.2   6.1    1.4  1  EMP24_GP25L     emp24/gp25L/p24 family/GOLD
        1.5    9.1   8.6         18    5.6   8.6    2.2  1  Spc24           Spc24 subunit of Ndc80
        1.9    9.0   4.9        3.9    8.0   1.8    2.4  2  FlaC_arch       Flagella accessory protein C (FlaC)
        2.7    8.5  10.9        7.9    7.0   5.1    2.5  2  DUF4140         N-terminal domain of unknown function (DUF414
        4.4    7.1  12.3        3.8    7.3   6.0    2.4  2  DivIC           Septum formation initiator


Domain annotation for each model (and alignments):
>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0088       2.8     157     199 ..      10      52 ..       4      59 .. 0.90
   2 !   10.3   3.9    0.0012      0.37     139     185 ..      64     110 ..      57     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0088
                              Vps5 157 aaksqqdklqqlkkeveelerkvqeaekeFeeisetikkEler 199
                                       +  + ++++ q+  ev e  r  ++a+  +  +s++i++El+r
  gi|300712788|ref|YP_003738600.1|  10 NIPDTEERMVQVAVEVPESVRDGAKAKLPYGGMSQVIREELNR 52 
                                       4557789**********************************97 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0012
                              Vps5 139 saeqelskkkeqleKlekaaksqqdklqqlkkeveelerkvqeaeke 185
                                       + e+ l+  +e+++Kl+++ ++ + kl++l+++ +++erk+++++++
  gi|300712788|ref|YP_003738600.1|  64 RLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQ 110
                                       57899999***********9999******************998765 PP

>> Tektin  Tektin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   4.0   1.4e-06   0.00046      29      94 ..      46     111 ..      41     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-06
                            Tektin  29 lideteektkktqadsnkrLeeRiediefwkeeLekeleelkeeieaLeeekrrlekalealeepl 94 
                                       +++e++  +  ++     rLe R+ed++  +++L++e +el+++ e+Le++ + +e++l++l+ + 
  gi|300712788|ref|YP_003738600.1|  46 IREELNRVAFGEEMGQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQE 111
                                       666666666667777889******************************************998765 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   8.5   2.2e-06    0.0007      48     107 ..      61     120 ..      40     131 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.2e-06
                            APG6_N  48 eleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne 107
                                       ++ +le +le++++e+++l++e +el ++ e+le++ +++e++l++l  +e+r+  +  +
  gi|300712788|ref|YP_003738600.1|  61 QRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLES 120
                                       445566667777777777777777777777777777777777777777777766555544 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   2.8   4.7e-06    0.0015      17      85 ..      66     127 ..      43     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.7e-06
                        Phage_GP20  17 kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldnai 85 
                                       +++l++v eerd+l+ +  + + +Le+L+++   ++++++++++l+++ ++    yeak++ l+ +  i
  gi|300712788|ref|YP_003738600.1|  66 ESRLEDVREERDKLQRERRELNAKLENLEDQ---AKDIERKLDDLTTQEDR----YEAKLESLEYNIRI 127
                                       7899*************************99...66678999999998888....77777766666555 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   1.5   8.3e-06    0.0027      21      79 ..      64     122 ..      56     132 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8.3e-06
                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHH CS
                        Laminin_II  21 plsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelk 79 
                                        l+ +le ++e+  +++r+ +e n+k++++  + +d +r+  +L+ + ++ ++kl++l+
  gi|300712788|ref|YP_003738600.1|  64 RLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLE 122
                                       68889999************************************************998 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   3.8   8.2e-06    0.0026      15      73 ..      66     124 ..      57     144 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.2e-06
                           DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerl 73 
                                       ++ l+++++e  k ++++++ ++k ++l+d+++++++++ +l+++ ++ e++ e le  
  gi|300712788|ref|YP_003738600.1|  66 ESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYN 124
                                       56677777777777777777777777777777777777777777777777777777655 PP

>> FmiP_Thoc5  Fms-interacting protein/Thoc5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   2.4   1.3e-05    0.0043      93     150 ..      49     108 ..       4     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-05
                        FmiP_Thoc5  93 mlaRLew..EleqRkelaeqlkeleekkkkleqeieekkkfLssLppkLkslkkatkplq 150
                                        l+R ++  E+ qR +l++ l+++ e++ kl+ e +e +++L++L+++ k++++++  l 
  gi|300712788|ref|YP_003738600.1|  49 ELNRVAFgeEMGQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLT 108
                                       566666554999******************************************998775 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   3.5   1.4e-05    0.0045     181     254 ..      48     122 ..      16     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
                              Spc7 181 eeleklqeaaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeae 254
                                       eel++    +e  + +  + +Le +ree ++l+ e +e++++l++l++q +++e k+++l++q +++e+++++ e
  gi|300712788|ref|YP_003738600.1|  48 EELNRVAFGEEMGQRSRlESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLE 122
                                       555555444444444445667888888888888888888888888888888888888888888888888877665 PP

>> Rab5-bind  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   3.7     2e-05    0.0063     202     261 ..      55     114 ..      41     131 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-05
                         Rab5-bind 202 lkeelasisslkveleeikvekeslekslaektrqldklqtikselEeqlkelekekaav 261
                                       + ee+++ s l  +le+++ e+++l+  ++e +++l++l    +++E +l +l+ +    
  gi|300712788|ref|YP_003738600.1|  55 FGEEMGQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRY 114
                                       4599***9*******************************************987654333 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   5.2   4.3e-05     0.014      75     129 ..      64     121 ..      43     159 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.3e-05
                     Jnk-SapK_ap_N  75 rae...eeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeael 129
                                       r e   e++ e  d++++er+el++k+e+le++ + +e k++++++q  r e k ++l
  gi|300712788|ref|YP_003738600.1|  64 RLEsrlEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESL 121
                                       3331113344445566666666666666666666666666666666666666554444 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   5.9   3.7e-05     0.012      47     115 ..      61     129 ..      58     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.7e-05
                              ADIP  47 ardrdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknek 115
                                       +r+r     e + e++ kl+ e   l++k e l++q ++ er+l+ ++ +e   e+kl++le  +++e 
  gi|300712788|ref|YP_003738600.1|  61 QRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNIRIEG 129
                                       55555666788999999*******************************************999888775 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.0   4.8e-05     0.015      23      79 ..      64     119 ..      38     129 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.8e-05
                      Syntaxin-6_N  23 rwe.rlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidek 79 
                                       r e rl ++ +  ++++l++ r+eL+++l+++e + +d+e+  + +  ++++++ + +
  gi|300712788|ref|YP_003738600.1|  64 RLEsRLEDVRE--ERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLE 119
                                       33314333333..59**************************99877777766665554 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  12.2   9.8e-05     0.031      76     135 ..      63     122 ..      44     126 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.8e-05
                     Tropomyosin_1  76 ealtrkiqlLEeeleesdkkLkettekLretdvkaeelERkvkaLeqerdewekkyeele 135
                                         l+ +++ + ee ++ +++ +e + kL++ + +a ++ERk  +L +++d +e k+e le
  gi|300712788|ref|YP_003738600.1|  63 SRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLE 122
                                       46889999*************************************************987 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.5     5e-05     0.016      52     109 ..      78     138 ..      71     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5e-05
                          Lectin_N  52 qLqreLetLketfsn...fssstlaeiqalssqggslsekvtsleaklekkqqdlkadhse 109
                                       +Lqre + L+++++n    +++++ ++ +l++q ++ + k++sle +++ + ++l adh +
  gi|300712788|ref|YP_003738600.1|  78 KLQRERRELNAKLENledQAKDIERKLDDLTTQEDRYEAKLESLEYNIRIEGRNLFADHGQ 138
                                       6666666666555551116788899*********************************986 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.9   5.5e-05     0.018     316     405 ..      55     129 ..      21     159 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.5e-05
                              FapA 316 lGselgtkteievgldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklke 392
                                        G e+g++ ++e  l+  +++e++++l++e +el+++le+l++             + ++++ +l+ l+++  +++ 
  gi|300712788|ref|YP_003738600.1|  55 FGEEMGQRSRLESRLE--DVREERDKLQRERRELNAKLENLED-------------QAKDIERKLDDLTTQEDRYEA 116
                                       3444444444444444..4444444444444444444444444.............444555566666666666666 PP

                              FapA 393 eleeleeelkelk 405
                                       +le+le ++    
  gi|300712788|ref|YP_003738600.1| 117 KLESLEYNIRIEG 129
                                       6666665555444 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  11.5   8.3e-05     0.027      47     107 ..      57     117 ..      55     122 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.3e-05
                             DHR10  47 aelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaeekrea 107
                                       +e+ +    +++l++ r++ +++++e+rel++k e l+ q +  e+kl+ l+ q ++ +++
  gi|300712788|ref|YP_003738600.1|  57 EEMGQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAK 117
                                       57888888999*****************************************998876655 PP

>> DUF737  Protein of unknown function (DUF737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   8.8   8.2e-05     0.026     103     175 ..      35     122 ..       2     126 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.2e-05
                            DUF737 103 a..........vqeelakllerEreaaq...eelteailrerlstedEr..lkaqllelerkarqLeekekeLkkqd 164
                                       a          ++eel++++  E   ++   e+  e ++ er + ++Er  l+a+l +le +a+ +e k  +L  q+
  gi|300712788|ref|YP_003738600.1|  35 AklpyggmsqvIREELNRVAFGEEMGQRsrlESRLEDVREERDKLQRERreLNAKLENLEDQAKDIERKLDDLTTQE 111
                                       244556666669********9998888733355566778889888888833578899******************** PP

                            DUF737 165 afYkeqlakLe 175
                                       + Y  +l+ Le
  gi|300712788|ref|YP_003738600.1| 112 DRYEAKLESLE 122
                                       *********99 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   4.0   7.8e-05     0.025      75     139 ..      64     128 ..      47     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.8e-05
                      HAUS-augmin3  75 eeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelrae 139
                                        +e+ le+ ++e ++Lq+e++ ++ +l++L+ qa +++++l +l+++e+  + kl+ ++ ++r e
  gi|300712788|ref|YP_003738600.1|  64 RLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNIRIE 128
                                       56789999**********************************************99998877655 PP

>> Mce4_CUP1  Cholesterol uptake porter CUP1 of Mce4, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   0.00011     0.034      30      86 ..      56     111 ..      54     124 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00011
                         Mce4_CUP1  30 GerlGesltdlnevLdelNprlpqlredireladladvYadaapdlldaLdnavtts 86 
                                       Ge++G+  ++l++ L+++ ++ ++l+++ rel++  +  +d a+d+ + Ld+++t  
  gi|300712788|ref|YP_003738600.1|  56 GEEMGQR-SRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQE 111
                                       8889987.789******************************************9976 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.2   8.7e-05     0.028     172     239 ..      61     124 ..      52     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.7e-05
                        Fmp27_WPPW 172 qkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkes 239
                                       q++ le+Rle+++e+++kl+++ +el+ k e+    l+++ +++e+++++l ++ +  e+ le+l+ +
  gi|300712788|ref|YP_003738600.1|  61 QRSRLESRLEDVREERDKLQRERRELNAKLEN----LEDQAKDIERKLDDLTTQEDRYEAKLESLEYN 124
                                       67778999999999999999999999888888....66666666666666666665555555555544 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.4   0.00011     0.035      59     123 ..      60     124 ..      42     125 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 0.00011
                           DUF1664  59 atkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieek 123
                                        ++ +L+sr++ v ++ d+ ++  +e+++++++++++ ++i+++++ + +     e+kle++e++
  gi|300712788|ref|YP_003738600.1|  60 GQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYN 124
                                       4788999*****************************************99999999999999976 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   6.1   0.00011     0.034      43     118 ..      63     139 ..      47     161 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00011
                               GAS  43 ernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelk.dlkwehevleqrfekv 118
                                        r e +l+++ +e  +l+ + +++++++e+L+ q+k+ e++  +l+ ++ r++   + l+ +++ e ++l     +v
  gi|300712788|ref|YP_003738600.1|  63 SRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEyNIRIEGRNLFADHGQV 139
                                       34455555555555555555555555555555555555555555555555555444444324555555555555555 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.7     0.004       1.3       7      39 ..      62      94 ..      57      95 .. 0.63
   2 ?   11.1   3.0   0.00088      0.28      64     100 ..      90     126 ..      87     129 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.004
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                       Prefoldin_2  7 fqqlqqqlqqlaqqikqletqlkelelvleele 39
                                       ++l+++l+++ +++++l+++ +el+  le+le
  gi|300712788|ref|YP_003738600.1| 62 RSRLESRLEDVREERDKLQRERRELNAKLENLE 94
                                      556666777777777777777776666666665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00088
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                       Prefoldin_2  64 keeLeerketlekeiktlekqleklekeleelkeelq 100
                                       +e+Le++++++e +++ l+ q+++ e++le l+ +++
  gi|300712788|ref|YP_003738600.1|  90 LENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNIR 126
                                       589*****************************99887 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  10.5   0.00028      0.09       8      65 ..      64     121 ..      59     125 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00028
                              ZapB   8 qLEskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkkL 65 
                                       +LEs+ +   ++ ++Lq e +eL ++ e+l+++++ +e++++ l ++    +++l++L
  gi|300712788|ref|YP_003738600.1|  64 RLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESL 121
                                       89**********************************************9999999987 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.8   0.00031     0.098      85     141 ..      63     119 ..      28     131 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00031
                           UPF0242  85 ktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklele 141
                                       +  e  le+++ee ++L++e  + + +le+l+ + + ++ kl +   + +++  +le
  gi|300712788|ref|YP_003738600.1|  63 SRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLE 119
                                       445567888888888888888888888888888888888888876665555554444 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.7   0.00027     0.087     424     493 ..      61     130 ..      33     137 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00027
                            AAA_13 424 aieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkafGlgeleLkfeeekkgYrivrkgg 493
                                       + + le +l++  +e  kl+ e +eL ++l++ +  a++i+++L +   +e+  ++  e   Y+i ++g 
  gi|300712788|ref|YP_003738600.1|  61 QRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNIRIEGR 130
                                       5566777777777777777777777777777777777777777777777777777777777777777655 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00031       0.1       5      72 ..      70     143 ..      64     192 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00031
                             TMPIT   5 eelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk......eeeeeeveelk 72 
                                       e++++e ++l+ + +e+++kle+l+ + +++ ++++  + +  + +++l++l+ +++        ++ +ve+++
  gi|300712788|ref|YP_003738600.1|  70 EDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNIRiegrnlFADHGQVESIA 143
                                       55566666666666666666666666666666666666666666666666666554433333334444444444 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  11.3   0.00059      0.19      67     120 ..      61     114 ..      47     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00059
                    CENP-F_leu_zip  67 elreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqm 120
                                       ++++le+ L+++r+e+++L++e ++ + + ++Le    ++e+ l ++  ++ + 
  gi|300712788|ref|YP_003738600.1|  61 QRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRY 114
                                       5789*************************************9998765554333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.8   0.00049      0.16     143     196 ..      57     108 ..       8     128 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00049
                            AAA_23 143 feefelkdkkerleelekeleeledekkllekl.eqekekekeleeleeeleeil 196
                                       +e+ ++++ ++rle++++e ++l+ e+++l+++ e   + e++ +++e++l +++
  gi|300712788|ref|YP_003738600.1|  57 EEMGQRSRLESRLEDVREERDKLQRERRELNAKlE---NLEDQAKDIERKLDDLT 108
                                       55666777888999999999999999998888743...33334444444443332 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.0   0.00048      0.15     361     457 ..      28     121 ..       3     136 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00048
                          Macoilin 361 ssknskkqklpaGkssaalkdaaenslpnnqlskkdalv.rLeadikkLkaeLqasrqteqelrskissltseersl 436
                                       s ++  k klp G  s+  +++ +++   +++++++ l+ rLe d++  + +Lq +r   +el+ k++ l  + + +
  gi|300712788|ref|YP_003738600.1|  28 SVRDGAKAKLPYGGMSQVIREELNRVAFGEEMGQRSRLEsRLE-DVREERDKLQRER---RELNAKLENLEDQAKDI 100
                                       4567789999999999999999988888889999887776776.6777777777776...58999999999999999 PP

                          Macoilin 437 kselqqlkkendllqtklhel 457
                                         +l+ l  ++d   +kl++l
  gi|300712788|ref|YP_003738600.1| 101 ERKLDDLTTQEDRYEAKLESL 121
                                       999999999999999998876 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   5.1   0.00072      0.23      22      73 ..      62     123 ..      48     132 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00072
                            CENP-H  22 lrelqeeltevekenlrlkrknrelaaellelakekesek..........eklkeeleklea 73 
                                        + l+++l++v++e+ +l+r+ rel a+l+ l+ +++  +          ++++++le+le 
  gi|300712788|ref|YP_003738600.1|  62 RSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIErklddlttqeDRYEAKLESLEY 123
                                       678999***********************888888777776785554444334555555544 PP

>> Lipoprotein_20  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.7   0.00075      0.24     125     163 ..      63     105 ..      41     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00075
                    Lipoprotein_20 125 eesdskldslreqqaaLeaeLeettrKLenLt....diERqLs 163
                                       ++ +s+l+ +re++ +L+ e +e + KLenL     diER+L 
  gi|300712788|ref|YP_003738600.1|  63 SRLESRLEDVREERDKLQRERRELNAKLENLEdqakDIERKLD 105
                                       3447899999999999999999999999999633336999885 PP

>> DUF916  Bacterial protein of unknown function (DUF916)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.031       9.8      83     111 ..       5      33 ..       1      37 [. 0.87
   2 ?    4.1   0.0      0.15        47      26      56 ..      81     111 ..      78     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.031
                            DUF916  83 ipkeitlpakesktvklkikmPkeefdGv 111
                                        ++e+++p  e++ v++ +++P++  dG 
  gi|300712788|ref|YP_003738600.1|   5 SDEEMNIPDTEERMVQVAVEVPESVRDGA 33 
                                       3499*******************999996 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.15
                            DUF916  26 gqeqelevkikNssdkeitveitvntAvTnd 56 
                                        +++el+ k++N +d+++ +e ++ + +T++
  gi|300712788|ref|YP_003738600.1|  81 RERRELNAKLENLEDQAKDIERKLDDLTTQE 111
                                       57889****************9999888876 PP

>> FemAB  FemAB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.0   0.00061      0.19     240     303 ..      65     130 ..      62     137 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00061
                             FemAB 240 laeylkelqekleklekklakleekleknpe..kkkkkklkelekqlaslekelkeaeefiekdge 303
                                       l+ +l++++e+++kl+ ++++l++kle+ ++  k  ++kl+ l+ q +++e +l+ +e  i  +g+
  gi|300712788|ref|YP_003738600.1|  65 LESRLEDVREERDKLQRERRELNAKLENLEDqaKDIERKLDDLTTQEDRYEAKLESLEYNIRIEGR 130
                                       5678999999999999999999999998888778889*****************999987776665 PP

>> TraF_2  F plasmid transfer operon, TraF, protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00057      0.18      25      82 ..      54     111 ..      49     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00057
                            TraF_2  25 svgvevgdvdnlvDkiDdlsdildgleaavnaasadetqvdeaaddlnalLedlggdg 82 
                                       ++g e+g+ + l  +++d+ ++ d+l++   +++a+  +++++a+d+++ L+dl +++
  gi|300712788|ref|YP_003738600.1|  54 AFGEEMGQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQE 111
                                       6889999999******************99999999666***************9876 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   6.9    0.0014      0.43      15      94 ..      47     122 ..      43     127 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0014
                                       HHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHH CS
                      Seryl_tRNA_N  15 keklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelk 91 
                                       +e l +R ++ +++ +   l+++ + ++ e ++lq+er el+++ +++ ++ +d+     + ++l ++ +++ea+l+
  gi|300712788|ref|YP_003738600.1|  47 REEL-NRVAFGEEMGQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDI---ERKLDDLTTQEDRYEAKLE 119
                                       5555.45566666666666666666666666666666666666666666654333...3444555555555555555 PP

                                       HHH CS
                      Seryl_tRNA_N  92 ele 94 
                                        le
  gi|300712788|ref|YP_003738600.1| 120 SLE 122
                                       554 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   9.5   0.00079      0.25      71     123 ..      70     122 ..      47     147 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00079
                           DUF3552  71 kelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsle 123
                                       ++++e r++lqr  + l+ k e+L+ + +++e+k ++l+++e++ ++k +sle
  gi|300712788|ref|YP_003738600.1|  70 EDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLE 122
                                       35666666666666666666666666666666666666666666555544444 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.4    0.0017      0.54      22      58 ..      85     118 ..      59     144 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0017
                           NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqLaeletkv 58 
                                        l++++++++++ +d   ++ kLd++++q +  e+k+
  gi|300712788|ref|YP_003738600.1|  85 ELNAKLENLEDQAKD---IERKLDDLTTQEDRYEAKL 118
                                       455555555555555...4455555555554444444 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.3     0.065        21      36      83 ..      64     111 ..      57     117 .. 0.64
   2 ?   11.6   8.0   0.00073      0.23      28      89 ..      77     139 ..      70     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.065
                            CENP-Q  36 aleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaearer 83 
                                       +le+ L+  ++  ++L++e++++ ++le+ + + ++ e++  +++ ++
  gi|300712788|ref|YP_003738600.1|  64 RLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQE 111
                                       566666666666666666666666666666666666666666666554 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00073
                            CENP-Q  28 eklldekaaleaqLspelhslelLeaeiekeeralerdyeaLreLeknakaeare.rkeklkk 89 
                                       +kl +e ++l+a+L+ ++++ ++ e+ ++ +     r +++L++Le n+++e r+   +  + 
  gi|300712788|ref|YP_003738600.1|  77 DKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNIRIEGRNlFADHGQV 139
                                       6888999*********************************************99976664333 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.4    0.0011      0.36     105     165 ..      63     123 ..      46     145 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0011
                            DUF724 105 tklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlks 165
                                       ++l+++++++ ++  + + e+r+l++++++le + +++er+l+ l +++++ ++++ +l+ 
  gi|300712788|ref|YP_003738600.1|  63 SRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEY 123
                                       3444444444444444444444444444444444444444444444555555555554444 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.7   0.00084      0.27     134     178 ..      60     104 ..      45     106 .. 0.92
   2 ?    9.1   5.7    0.0029      0.92     135     178 ..      61     104 ..      60     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00084
                           DUF2968 134 qQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqirqLqaqq 178
                                        Q++++++r +++r+e ++L+ +r+++ a+l++l+ q ++++++ 
  gi|300712788|ref|YP_003738600.1|  60 GQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKL 104
                                       599999*********************************999976 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0029
                           DUF2968 135 QeqavaerQkqarkeaaaLeaqreaaqaqlralqrqirqLqaqq 178
                                       Q++++++r +++r+e ++L+ +r+++ a+l++l+ q ++++++ 
  gi|300712788|ref|YP_003738600.1|  61 QRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKL 104
                                       888999999***************************99999876 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.7   0.00094       0.3     131     234 ..      65     112 ..      29     148 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00094
                           DUF4407 131 ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld 207
                                       l+++l++ ++++++lq+e ++                                                        
  gi|300712788|ref|YP_003738600.1|  65 LESRLEDVREERDKLQRERRE-------------------------------------------------------- 85 
                                       222222222222222222222........................................................ PP

                           DUF4407 208 atarlaalraelaeleaerakeraasq 234
                                        +a+l++l+++++++e+++++ +++ +
  gi|300712788|ref|YP_003738600.1|  86 LNAKLENLEDQAKDIERKLDDLTTQED 112
                                       233333333333333333333333322 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.0    0.0012       0.4      69     118 ..      66     115 ..      43     125 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0012
                           DUF4337  69 eelaaavdkkiakykkkiarykkekkeikkkAkeleaerdeaneasdkfd 118
                                       e   ++v+++++k++++  + +++ ++++++Ak++e++ d+++ ++d+++
  gi|300712788|ref|YP_003738600.1|  66 ESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYE 115
                                       23334455666666666666666677777799999999999999999986 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.7    0.0057       1.8       8      46 ..      64     102 ..      63     104 .. 0.91
   2 ?   11.2   3.3     0.001      0.33       4      41 ..      88     125 ..      85     127 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0057
                              XhlA   8 rietkldnleervdkleekaaeaeekiknleedlkkles 46 
                                       r+e++l++  e+ dkl++  +e  +k++nle++ k++e 
  gi|300712788|ref|YP_003738600.1|  64 RLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIER 102
                                       89*********55********************999985 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.001
                              XhlA   4 erlerietkldnleervdkleekaaeaeekiknleedl 41 
                                        +le +e + +++e ++d+l   +++ e+k+++le ++
  gi|300712788|ref|YP_003738600.1|  88 AKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNI 125
                                       45555555555555555555555555555555555444 PP

>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   7.6    0.0035       1.1      58     114 ..      24      96 ..      12     125 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0035
                            KfrA_N  58 elPealaeal................laalwqaaleeaeeelaaaraelqaaraaleaeraeaearveeleae 114
                                       e+Pe + + +                l +++      ++++l+++ ++++++r++l++er+e++a++e+le++
  gi|300712788|ref|YP_003738600.1|  24 EVPESVRDGAkaklpyggmsqvireeLNRVAFGEEMGQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQ 96 
                                       5555555555555553332111111103333333335666888888888888888888888888888888876 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  11.5    0.0014      0.45      76     139 ..      62     125 ..      34     143 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0014
                             ATG16  76 iqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletkl 139
                                        + le++l  +ree  +l+++r el+ +l +l+++ ++ e+kl   +++ ++ ea+ ++le ++
  gi|300712788|ref|YP_003738600.1|  62 RSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNI 125
                                       4456666666666666666666666666666666666666666555555555555555555443 PP

>> PHTB1_C  PTHB1 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.1    0.0013      0.41     210     269 ..      78     139 ..      61     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0013
                           PHTB1_C 210 elrqeaekleeeLeerasqfRaiqrrL..LtrfkdktpaalqnLdtLLegtyrqvialadal 269
                                       +l+ e ++l+++Le+   q + i+r+L  Lt   d+++a+l+ L+  +    r+++a   ++
  gi|300712788|ref|YP_003738600.1|  78 KLQRERRELNAKLENLEDQAKDIERKLddLTTQEDRYEAKLESLEYNIRIEGRNLFADHGQV 139
                                       68999*************************************99987766666666655555 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   9.9    0.0027      0.87      49     109 ..      59     122 ..      52     126 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0027
                        TPR_MLP1_2  49 lvkhaedvkelqalreelnelkaeiaelkaeaesakael...eeseesweeqkeelekelsele 109
                                       + + +     l+++ree ++l+ e++el+a++e+++ +    e++   +++q++++e +l++le
  gi|300712788|ref|YP_003738600.1|  59 MGQRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAkdiERKLDDLTTQEDRYEAKLESLE 122
                                       5555555567777788888888888888777776665540004444456677777777777776 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   9.9    0.0026      0.84      14      67 ..      69     122 ..      66     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0026
                        TMF_DNA_bd  14 IaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleele 67 
                                       ++ ++eE  kL+ + ++ln+++ +L  ++k+ e ++++l+ + +++e +le+le
  gi|300712788|ref|YP_003738600.1|  69 LEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLE 122
                                       67789***********************************************98 PP

>> DUF773  CDK5 regulatory subunit-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.9    0.0043       1.4     437     493 ..      64     120 ..      62     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0043
                            DUF773 437 rlvasLeqklkqeeklkeklkdleekreelqeelselepkleklvkktrelkkliek 493
                                       rl++ Le+ +++ +kl++++++l++k e+l+++ +++e kl+ l+++  ++ +++e+
  gi|300712788|ref|YP_003738600.1|  64 RLESRLEDVREERDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLES 120
                                       8999999999********************************999999999888875 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.8    0.0047       1.5      76     121 ..      62     121 ..      43     139 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0047
                             Atg14  76 iadlrerlqelkdklsqlkkeieekkkklaklsdklk..............kRrsdlesl 121
                                       +++l++rl+ +++ +++l++e +e  +kl+ l d+ k              +  ++lesl
  gi|300712788|ref|YP_003738600.1|  62 RSRLESRLEDVREERDKLQRERRELNAKLENLEDQAKdierklddlttqedRYEAKLESL 121
                                       445555666666666666666666666666666665533222222222221333444444 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.1    0.0067       2.2     106     155 ..      76     125 ..       5     127 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0067
                       EMP24_GP25L 106 dsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrv 155
                                        ++ + +  +l+ +l++le++ ++i+r+++ l ++e+r  + +es++ ++
  gi|300712788|ref|YP_003738600.1|  76 RDKLQRERRELNAKLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNI 125
                                       2333555567888********************************98776 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   8.6     0.057        18      10      44 ..      66     103 ..      59     134 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.057
                             Spc24  10 akelsdleselesleselaelkeeleeleeesee...k 44 
                                          l+d+ +e ++l+ e +el+++le+le++ ++   k
  gi|300712788|ref|YP_003738600.1|  66 ESRLEDVREERDKLQRERRELNAKLENLEDQAKDierK 103
                                       44444555555555555555555555555544442221 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.8     0.012       3.9       5      39 ..      65      99 ..      62     100 .. 0.92
   2 ?    5.6   0.9     0.067        22       1      38 [.      89     126 ..      85     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.012
                         FlaC_arch  5 lEnklsklsteletvkkeneelsksveelkenVkd 39
                                      lE++l+++  e + +++e  el+ ++e+l+++ kd
  gi|300712788|ref|YP_003738600.1| 65 LESRLEDVREERDKLQRERRELNAKLENLEDQAKD 99
                                      99****************************99887 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.067
                         FlaC_arch   1 ridelEnklsklsteletvkkeneelsksveelkenVk 38 
                                       ++++lE + ++++ +l+ + ++ +  + ++e l+ n++
  gi|300712788|ref|YP_003738600.1|  89 KLENLEDQAKDIERKLDDLTTQEDRYEAKLESLEYNIR 126
                                       67788888888888888888888888888888888775 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.1     0.025       7.9      65      94 ..      62      96 ..      19      98 .. 0.71
   2 ?    5.7   1.6     0.064        20      65      93 ..      95     123 ..      89     128 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.025
                           DUF4140 65 e.....elkalraeleeledelaaledelaaaear 94
                                            +l+ +r+e ++l++e+++l+++l+++e++
  gi|300712788|ref|YP_003738600.1| 62 RsrlesRLEDVREERDKLQRERRELNAKLENLEDQ 96
                                      03333357778888888888888888888887776 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.064
                           DUF4140  65 eelkalraeleeledelaaledelaaaea 93 
                                       ++ k ++++l+ l+++ +++e++l+++e 
  gi|300712788|ref|YP_003738600.1|  95 DQAKDIERKLDDLTTQEDRYEAKLESLEY 123
                                       23566777777777777777777776665 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.0     0.012       3.8      25      62 ..      61      98 ..      53     100 .. 0.64
   2 ?    4.8   3.2     0.074        24      20      50 ..      91     121 ..      88     128 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.012
                                      HHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXX CS
                             DivIC 25 eiaalqaelaklkaeneeLeaevkdLksdedyieerAR 62
                                      ++ +l+  l+ +++e+++L++e ++L+   + +e +A+
  gi|300712788|ref|YP_003738600.1| 61 QRSRLESRLEDVREERDKLQRERRELNAKLENLEDQAK 98
                                      45566666666666666666666666556666666665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.074
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
                             DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdL 50 
                                         l+ + ++++++l+ l+ ++++ ea+++ L
  gi|300712788|ref|YP_003738600.1|  91 ENLEDQAKDIERKLDDLTTQEDRYEAKLESL 121
                                       678999999999********99999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1493  (0.0832729); expected 358.6 (0.02)
Passed bias filter:                      913  (0.0509231); expected 358.6 (0.02)
Passed Vit filter:                       263  (0.014669); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              56  [number of targets reported over threshold]
# CPU time: 0.67u 0.31s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 1371.39
//
Query:       gi|300712789|ref|YP_003738601.1|  [L=167]
Description: hypothetical protein HacjB3_17338 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1186.71
//
Query:       gi|300712790|ref|YP_003738602.1|  [L=428]
Description: hypothetical protein HacjB3_17343 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-05   22.1   3.4     0.0002   21.0   3.4    1.5  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 
     0.0091   15.9   2.0     0.0091   15.9   2.0    2.4  2  Beta_helix  Right handed beta helix region


Domain annotation for each model (and alignments):
>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   3.4   2.3e-08    0.0002       2      23 ..       7      28 ..       6      29 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.3e-08
                        TAT_signal  2 lSRRdFLKgsAAaaAAaalggc 23
                                      lSRR FL+g+A++a A+ l+gc
  gi|300712790|ref|YP_003738602.1|  7 LSRRGFLRGTAGLAVAGSLAGC 28
                                      8********************9 PP

>> Beta_helix  Right handed beta helix region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.63   5.6e+03      35      43 ..     102     110 ..      85     132 .. 0.50
   2 !   15.9   2.0     1e-06    0.0091      24      83 ..     192     262 ..     185     415 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.63
                                       EEES-EEES CS
                        Beta_helix  35 vienneian 43 
                                       v++n +ia+
  gi|300712790|ref|YP_003738602.1| 102 VVTNAVIAS 110
                                       222222222 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1e-06
                                       -SEEE-SSS-.EEES-EEES-SS-SEEE-TT.........-S-EEES-EEE---..SEEE-TT.--S--EEE CS
                        Beta_helix  24 yGiylrgssnvvienneiannsgsGiyilgs.........snntisnntisdnn..gggialf.gasnnlie 83 
                                        Gi + +++  +i+n+ei ++s+  i++++          s+  i+n++i+d++  g+g  l+ ++++ + e
  gi|300712790|ref|YP_003738602.1| 192 RGISITSGNV-RIDNCEIFGWSTQAISVNCPrswgrerdqSHPRIQNSSIHDCGlsGYGYGLEvNTGHPVCE 262
                                       4566655555.6666666666666666666666666666666666666666666664444444334444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2927.07
//
Query:       gi|300712791|ref|YP_003738603.1|  [L=69]
Description: hypothetical protein HacjB3_17348 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.092   13.0   3.1       0.22   11.8   3.2    1.6  1  DUF2530   Protein of unknown function (DUF2530)


Domain annotation for each model (and alignments):
>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.2   1.2e-05      0.22       3      37 ..       6      40 ..       4      68 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.2e-05
                           DUF2530  3 pPeLprrLtdprpvivvgtllWlvalvvllvvgda 37
                                       P L rrL ++  ++vvg ++++v++ +l+ +++ 
  gi|300712791|ref|YP_003738603.1|  6 NPGLLRRLFNLARFVVVGLIIYVVSMAILMGLRGP 40
                                      69999*********************999755433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 504.73
//
Query:       gi|300712792|ref|YP_003738604.1|  [L=114]
Description: hypothetical protein HacjB3_17353 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 826.22
//
Query:       gi|300712793|ref|YP_003738605.1|  [L=403]
Description: hypothetical protein HacjB3_17358 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1427  (0.0795917); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.31s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2753.93
//
Query:       gi|300712794|ref|YP_003738606.1|  [L=1092]
Description: transfer complex protein, putative [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.069   13.1   0.2       0.13   12.1   0.2    1.4  1  ATPase_2  ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   7.3e-06      0.13      97     209 ..     865     968 ..     811     984 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.3e-06
                          ATPase_2  97 eksklvfkaielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglfier 173
                                       e+s+ +  a +++ +ki+++  ++  +iDe+ +l      ++   v++L++ + +  +++++++ +++   + f   
  gi|300712794|ref|YP_003738606.1| 865 EESAMMSLAQSQVTQKIRRTEGEVMFLIDEAHQLL-----HNDAQVSWLQKQFRE-VARYDAIMWLMSQHPSEFVS- 934
                                       6677778888999**********************.....45889********99.8999**999999999***99. PP

                          ATPase_2 174 vyneselegrhkyilvddldketalnflkegfkele 209
                                        +n+s     +k +l+d   ++++ n+++    e e
  gi|300712794|ref|YP_003738606.1| 935 -SNSSDSNADKKQALLDQTSFKQIYNMPMST-TETE 968
                                       .88888888888899999999*******986.4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 7485.75
//
Query:       gi|300712795|ref|YP_003738607.1|  [L=168]
Description: hypothetical protein HacjB3_17368 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.033   14.0   0.0      0.044   13.6   0.0    1.2  1  Endonuc-BglII  Restriction endonuclease BglII


Domain annotation for each model (and alignments):
>> Endonuc-BglII  Restriction endonuclease BglII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-06     0.044      33     111 ..      39     113 ..      22     138 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-06
                     Endonuc-BglII  33 ssgenksdvkkrikellaakgWeeekrikaeseeeneledildthkvDfvKnrVaveiefnkkdqtyrDLlkfrlff 109
                                        +g+n+ +     +ell   gWe+e ++k   e + +++ +   + +D   + V ve e +++ ++   L+k+++++
  gi|300712795|ref|YP_003738607.1|  39 YGGGNQYL--SDRRELLDPLGWEQEVSVKF--ETTTDYDVVSRRASFDAYNDGVVVEHESGEQMRVNWHLMKMEIAH 111
                                       55556555..44499*******99999955..5555676688999**********************99***99866 PP

                     Endonuc-BglII 110 el 111
                                         
  gi|300712795|ref|YP_003738607.1| 112 RD 113
                                       43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1261.42
//
Query:       gi|300712796|ref|YP_003738608.1|  [L=172]
Description: hypothetical protein HacjB3_17373 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0044   16.9   0.1     0.0089   15.9   0.1    1.5  1  RHH_5     CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
  ------ inclusion threshold ------
      0.019   15.3   0.0      0.036   14.5   0.0    1.4  1  RHH_7     Transcriptional regulator, RHH-like, CopG
      0.066   13.2   1.0      0.086   12.8   1.0    1.1  1  DUF489    Protein of unknown function (DUF489)
        2.7    7.8   6.9        1.4    8.8   0.5    2.4  2  Vpu       Vpu protein


Domain annotation for each model (and alignments):
>> RHH_5  CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     2e-06    0.0089       2      29 ..      11      38 ..      10      46 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-06
                             RHH_5  2 kRvnvtLPeelleeLeewAdeegRsvSn 29
                                      kRv+++++e+ +++L+++A+e+  s+S 
  gi|300712796|ref|YP_003738608.1| 11 KRVTFYVSENEQNALKREAQEQDKSLSA 38
                                      9************************995 PP

>> RHH_7  Transcriptional regulator, RHH-like, CopG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     8e-06     0.036      30      61 ..       9      40 ..       3      47 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8e-06
                                      X-EEEEEEE-HHHHHHHHHHHHHTTS-CCHHH CS
                             RHH_7 30 kkfvvsfYlSkeeydiLeklAneEaeSVgsfi 61
                                      +++ v+fY+S++e + L++ A+e   S   + 
  gi|300712796|ref|YP_003738608.1|  9 RTKRVTFYVSENEQNALKREAQEQDKSLSAYC 40
                                      67789**********************99885 PP

>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.0   1.9e-05     0.086      63     113 ..      22      74 ..      17      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
                                       HHHHHT--SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHH..HHHHHTTHHHHT CS
                            DUF489  63 leqlekekkkkdaeltryalsllalerkLsknkealakl..gerieqierqle 113
                                       ++ l++e++++d +l  y+l+l++ +r+L  ++++ + l  ++r+e+i++q+ 
  gi|300712796|ref|YP_003738608.1|  22 QNALKREAQEQDKSLSAYCLQLIRRQRQLDAEEQLAEDLnvEQRLEEITQQAI 74 
                                       567889999999************************976337999**999964 PP

>> Vpu  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.5    0.0003       1.4      37      70 ..      60      93 ..      39     104 .. 0.82
   2 ?    2.0   1.0     0.038   1.7e+02      49      65 ..     149     165 ..     136     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0003
                               Vpu 37 keierlikrireraedSgnESdGeeeeelakLvh 70
                                       ++e++++ i++ a d  n S G+ ee+ ++L +
  gi|300712796|ref|YP_003738608.1| 60 LNVEQRLEEITQQAIDRINDSVGDVEETAEDLRD 93
                                      6899***********************9999966 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.038
                               Vpu  49 raedSgnESdGeeeeel 65 
                                         +dS +ES+  ++ ++
  gi|300712796|ref|YP_003738608.1| 149 SSDDSSDESEDRDDGKV 165
                                       56899999988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1253  (0.0698868); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1226.35
//
Query:       gi|300712797|ref|YP_003738609.1|  [L=174]
Description: relaxase/mobilization nuclease domain-containing protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.083   12.7   0.1       0.25   11.2   0.0    1.8  2  Glycos_trans_3N  Glycosyl transferase family, helical bundle 


Domain annotation for each model (and alignments):
>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.15   2.6e+03       6      21 ..      33      50 ..      32      53 .. 0.71
   2 ?   11.2   0.0   1.4e-05      0.25       2      43 ..      61     102 ..      60     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.15
                                      HHHTT...---HHHHHHH CS
                   Glycos_trans_3N  6 klrdg..eeLtaeeirfa 21
                                      k+rd+     ++ ei+++
  gi|300712797|ref|YP_003738609.1| 33 KVRDRtgRAMSDREIEQF 50
                                      666665468888888887 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.4e-05
                                       HHHHHHHTT.---HHHHHHHHHHHHTTSS-HHHHHHHHHHHH CS
                   Glycos_trans_3N   2 diikklrdgeeLtaeeirfaihgilkgevtdaqiaAfLmAlr 43 
                                       +ii+  rd+e+L++ e+  a +++++  ++d  +a  + A++
  gi|300712797|ref|YP_003738609.1|  61 HIIISPRDHEDLSDRELDRATREYMSEMIEDRPTADYAYAVH 102
                                       789999**********************99988887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1229  (0.0685482); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1318.78
//
Query:       gi|300712798|ref|YP_003738610.1|  [L=411]
Description: TraD protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-39  136.6   0.0    1.6e-39  135.9   0.0    1.2  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
    1.2e-13   51.1   0.0    2.2e-13   50.3   0.0    1.4  1  TraG-D_C         TraM recognition site of TraD and TraG
      7e-13   48.2   0.0    1.1e-12   47.6   0.0    1.3  1  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra
    1.4e-06   28.7   0.0    0.00041   20.6   0.0    2.4  2  AAA_22           AAA domain
    1.2e-05   25.5   0.0    2.4e-05   24.5   0.0    1.6  1  DUF87            Helicase HerA, central domain
  ------ inclusion threshold ------
      0.036   14.4   0.1       0.16   12.3   0.1    2.3  1  AAA_16           AAA ATPase domain
      0.059   13.0   0.0        0.1   12.2   0.0    1.4  1  DUF2026          Protein of unknown function (DUF2026)
      0.079   12.2   0.0       0.23   10.7   0.0    1.7  1  Zeta_toxin       Zeta toxin
      0.097   12.7   0.0          4    7.4   0.0    2.5  3  AAA_5            AAA domain (dynein-related subfamily)
       0.11   13.0   0.0       0.95   10.0   0.0    2.2  2  ABC_tran         ABC transporter
       0.16   12.2   0.0        1.3    9.2   0.0    2.5  3  Roc              Ras of Complex, Roc, domain of DAPkinase
       0.18   11.3   0.0       0.43   10.1   0.0    1.6  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   1.1e-42   1.6e-39      17     325 ..      37     354 ..      31     378 .. 0.86

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 1.1e-42
                     TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairar.gdraivlDltGafvsrfydegkdil.l.....nPlDaRsaaWsvfaeike 86 
                                        +l +G+ G+GK+++l+++++++++  ++ ++v+D + ++ +   + g d++ l        D    aW++f+ei++
  gi|300712798|ref|YP_003738610.1|  37 SLLTLGASGAGKSETLKHFVDQLQNEpNEPVVVYDHKTDYQEFLEERGVDMIrLssggsTGGDGSEIAWNIFEEIEH 113
                                       56889******************876268899*******99988888999995422222346778899********* PP

                     TrwB_AAD_bind  87 ksdfaeiAaalipedggssdpfWaeaartvlaetlrelvrek.kksnaallralltadleeLkellag......tea 156
                                       ++d++e+A al pe   ++ +fW+ a+r+++a+tl+ + re   ++na+l+r   +   e+++e l +      ++a
  gi|300712798|ref|YP_003738610.1| 114 EEDADELARALFPE---QNGDFWNAAGRQLFAATLKYIRREVvGPDNADLVRYWERTVPEKMHEKLTRdghedlAAA 187
                                       **************...999*****************9998625677999998888888999998876222222345 PP

                     TrwB_AAD_bind 157 aalvaeeaertaasiratlatnlevlelLa..ekgerFSireWleeedesgwlfltskaeqrallrpllsawldlai 231
                                       a+ +++e+er a s+ at +++++ l + +  ++ge FSire++++ d +++l l + ++q+ ++ p+   ++d ai
  gi|300712798|ref|YP_003738610.1| 188 ASAINPETERQAGSVFATAQQQVTDLFVGDfaKSGE-FSIREYMQNPD-GRVLVLDYPTRQSGTIAPVFRYLIDQAI 262
                                       5566699****************9998877735555.**********7.9************************988 PP

                     TrwB_AAD_bind 232 kallslpesrerrlWfflDElpaLgr.leelksllaegRkfGgavvlglqsiaqlrevYGedaaqsilslvntklil 307
                                          ++   +  r  +++lDE+++L++ ++ l +l++ gR +   ++l lqsiaql+++YG++ a+++ls + t + l
  gi|300712798|ref|YP_003738610.1| 263 MHGMD---DPGRSAYYLLDEIEHLDAtIKRLGELINVGRGVNCQAILSLQSIAQLEDTYGKERAHALLSGMVTVIGL 336
                                       77775...667889**********8549************************************************* PP

                     TrwB_AAD_bind 308 rvsdaetAeelsellGeq 325
                                       r++d+e+   l e++G  
  gi|300712798|ref|YP_003738610.1| 337 RTADEESVDFLRETIGTS 354
                                       ***************974 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.5e-16   2.2e-13       3     106 ..     274     375 ..     272     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.5e-16
                          TraG-D_C   3 lfllDEfanl.gkipdleellstgrsrgislvlilQsiaqleelYgkegaetilgncdvklflgvndeetaeelSkl 78 
                                       + llDE+ +l + i+ l el+++gr+ + +++l lQsiaqle++Ygke a ++l+++ +++ l+++dee  + l + 
  gi|300712798|ref|YP_003738610.1| 274 YYLLDEIEHLdATIKRLGELINVGRGVNCQAILSLQSIAQLEDTYGKERAHALLSGMVTVIGLRTADEESVDFLRET 350
                                       579******94456*************************************************************** PP

                          TraG-D_C  79 lGektvesestsssssgsggssesssss 106
                                       +G+   ++ +++  s+++++++   +++
  gi|300712798|ref|YP_003738610.1| 351 IGTSFEQY-TRNAGSDRTPREN--EEKE 375
                                       **998775.4444444444332..2223 PP

>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   7.1e-16   1.1e-12     111     395 ..     105     362 ..      17     380 .. 0.76

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 7.1e-16
                   T4SS-DNA_transf 111 fNpldyidlksevetedilsvaslilkkkgkgkddffsntarqLlvaliaevllkketetegqtlkvvramlsepnl 187
                                       +N + +i+      +ed   +a ++++++++   df++++ rqL+ a  +++ + + + + +  +++vr  ++    
  gi|300712798|ref|YP_003738610.1| 105 WNIFEEIE-----HEEDADELARALFPEQNG---DFWNAAGRQLFAA-TLKYIRREVVGPDN--ADLVRYWERTV-- 168
                                       55555554.....568889999999999986...*************.66666666665555..55555554433.. PP

                   T4SS-DNA_transf 188 edenkeeaklleelkgkeedrvgdnlrvlvektdetrsSvlgtakselalyadplvrnatSksdFdlrdlrrkk.vs 263
                                            e  k  e+l  + +++ + +++++ ++t+ + +Sv +ta++++    d  v  +  + +F++r+ ++++   
  gi|300712798|ref|YP_003738610.1| 169 ----PE--KMHEKLTRDGHEDLAAAASAINPETERQAGSVFATAQQQVT---DLFVGDFAKSGEFSIREYMQNPdGR 236
                                       ....22..234555666677778888899999999*******9998875...66788898899******99554134 PP

                   T4SS-DNA_transf 264 vyvi.vnpkdlevvapllrlffnmvvellkrklpnkderpkevlflLDEfpslG.kleileealatiagYgirltlI 338
                                       v v   +  ++   + ++ +f  ++ +++   +++  +    +  lLDE  +l   ++ l e + +++g + + +l 
  gi|300712798|ref|YP_003738610.1| 237 VLVLdYPTRQS---GTIAPVFRYLIDQAIMHGMDDPGRS---AYYLLDEIEHLDaTIKRLGELINVGRGVNCQAILS 307
                                       44330333344...5566666666669999999988877...999********6269******************** PP

                   T4SS-DNA_transf 339 iQsisqlketYgkegaksilsnsavvivfaasndeetaeyiSkllGktTvekestsk 395
                                        Qsi+ql++tYgke a+++ls    vi +  ++dee  + + + +G++ +e+ +++ 
  gi|300712798|ref|YP_003738610.1| 308 LQSIAQLEDTYGKERAHALLSGMVTVIGLR-TADEESVDFLRETIGTS-FEQYTRNA 362
                                       **********************66666665.556************75.44444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.7e-07   0.00041       5     112 ..      35     176 ..      32     212 .. 0.76
   2 ?    5.7   0.0     0.011        16      83     129 ..     258     308 ..     226     314 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-07
                            AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsst....sskdllrellral 64 
                                       +++l+  G sG+GK+ +l+ +++ql++e++                e+++v  + l+s++    + ++++ ++++++
  gi|300712798|ref|YP_003738610.1|  35 RRSLLTLGASGAGKSETLKHFVDQLQNEPNEPVvvydhktdyqeflEERGVDMIRLSSGGstggDGSEIAWNIFEEI 111
                                       5678888******************87765555****999999998555544666666665589999********** PP

                            AAA_22  65 glelka.......erlsseell.ealeqalrarav...ielliiDEaqhlr...s...eealeeL 112
                                       ++e +a        + ++ +++ +a +q + a+ +   +e++  D+a+ +r   +   e++ e+L
  gi|300712798|ref|YP_003738610.1| 112 EHEEDAdelaralFPEQNGDFWnAAGRQLFAATLKyirREVVGPDNADLVRyweRtvpEKMHEKL 176
                                       *9999988887774455555553555555555555877888888888888666514446666665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
                            AAA_22  83 eqalrarav.....ielliiDEaqhlrseealeeLrsllnl.srkgvqliLvG 129
                                        +++  +++      +  ++DE++hl+  + ++ L +l n+ +  ++q iL  
  gi|300712798|ref|YP_003738610.1| 258 IDQAIMHGMddpgrSAYYLLDEIEHLD--ATIKRLGELINVgRGVNCQAILSL 308
                                       333333333355558899********5..555555555555558888888765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.6e-08   2.4e-05      24      82 ..      36      91 ..      28     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.6e-08
                             DUF87 24 rHlAilgsTGsGKSntvavLleellekkgatililDpHGEYgkalekllsekvkvitps 82
                                      r+l+ lg +G+GKS t +  +++l ++++ ++++ D+  +Y  +l    +  v++i+ s
  gi|300712798|ref|YP_003738610.1| 36 RSLLTLGASGAGKSETLKHFVDQLQNEPNEPVVVYDHKTDYQEFL---EERGVDMIRLS 91
                                      78888***************************************9...44444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.16      25      64 ..      36      77 ..      27     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                            AAA_16 25 elvllsGesGvGKsslvrellralekd..ggiflrgkcdqle 64
                                      +++l  G+sG GKs  ++++ ++l+ +  + ++++ + ++++
  gi|300712798|ref|YP_003738610.1| 36 RSLLTLGASGAGKSETLKHFVDQLQNEpnEPVVVYDHKTDYQ 77
                                      789999****************99999876888877777773 PP

>> DUF2026  Protein of unknown function (DUF2026)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.9e-05       0.1     133     188 ..     127     181 ..     116     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-05
                                       -STT-EEEEE-HHHHHHHTTTGGG-HHHHHHHHHHHHH---TTS---SEEEEE-TT CS
                           DUF2026 133 kksGDffldpdlevteellkklakslalkdlaevcaeWfrkpPkkmeasisikdad 188
                                       +++GDf+ ++  ++ +  lk+++++ +  d a++   W r  P+km+++++  d++
  gi|300712798|ref|YP_003738610.1| 127 EQNGDFWNAAGRQLFAATLKYIRREVVGPDNADLVRYWERTVPEKMHEKLTR-DGH 181
                                       589*********************************************9974.444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.23      23      50 ..      42      71 ..      30      82 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                        Zeta_toxin 23 GqpGAGKselaellkdele..rqgnvvrld 50
                                      G++GAGKse+++ + d+l+  +++ vv+ d
  gi|300712798|ref|YP_003738610.1| 42 GASGAGKSETLKHFVDQLQnePNEPVVVYD 71
                                      899***************975556565544 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0027         4       2      46 ..      38      84 ..      37     101 .. 0.76
   2 ?   -0.4   0.0      0.72   1.1e+03      64      98 ..     215     267 ..     181     273 .. 0.70
   3 ?    2.1   0.0      0.12   1.8e+02      53      91 ..     256     296 ..     245     302 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0027
                                      EEEE--SSSSHHHHHHHGGGGB.S--EEE.EE--TT--HHHHH--B- CS
                             AAA_5  2 vlLvGppGtgKselaerlaaal.nrevey.vqltrdtteedlkgrre 46
                                      +l +G++G gKse  +++   l n + e  v    +t +++++ +r 
  gi|300712798|ref|YP_003738610.1| 38 LLTLGASGAGKSETLKHFVDQLqNEPNEPvVVYDHKTDYQEFLEERG 84
                                      5669******************8555544144556677777777665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.72
                                       -..................G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..- CS
                             AAA_5  64 r..................egeilvlDEveraesevlnsLlslleerrlllee 98 
                                                           g++lvlD  +r +  +++++  l+++  ++ ++
  gi|300712798|ref|YP_003738610.1| 215 VgdfaksgefsireymqnpDGRVLVLDYPTRQSGTIAPVFRYLIDQAIMHGMD 267
                                       04444455566666666778999999999999999999999999999998665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.12
                                       ....--------...G-SEEEEESGGG--HHHHHHHHHHHHS CS
                             AAA_5  53 slvdsplvraar...egeilvlDEveraesevlnsLlsllee 91 
                                        l d++++  +    +++ ++lDE+e++ ++++++L  l++ 
  gi|300712798|ref|YP_003738610.1| 256 YLIDQAIMHGMDdpgRSAYYLLDEIEHL-DATIKRLGELINV 296
                                       56778888777788899999******44.7788888888875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00063      0.95      17      40 ..      41      64 ..      34      96 .. 0.74
   2 ?    0.1   0.0      0.72   1.1e+03      50     115 ..     340     407 ..     317     410 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00063
                                      EESTTSSHHHHHHHHTTSS--SEE CS
                                      xxxxxxxxxxxxxxxxxxxxxxxx RF
                          ABC_tran 17 vGenGaGKStLlkllagllkpteG 40
                                      +G +GaGKS  lk +  +l+++  
  gi|300712798|ref|YP_003738610.1| 41 LGASGAGKSETLKHFVDQLQNEPN 64
                                      8**************999887433 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.72
                                       GGB-HHHCCHCEEEE-SS..--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHH CS
                                       xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                          ABC_tran  50 keqeleslrkeigvlpqe..pqlfpeltvrenesdeeiekalsklglkelkdtvvksspssLSgGqkq 115
                                       +e++  +lr+ ig+ +++   +  ++ t rene++ee + a   l++ +  + v+ +++s   +Gq q
  gi|300712798|ref|YP_003738610.1| 340 DEESVDFLRETIGTSFEQytRNAGSDRTPRENEEKEEYQFAKGDLRNFDPGEAVICRQGSGWVHGQIQ 407
                                       34677889999999999976667777789999999988888777777776666666666666666655 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00089       1.3       2      39 ..      38      75 ..      37      91 .. 0.83
   2 ?   -1.6   0.0       1.9   2.9e+03      59      75 ..     131     147 ..     112     153 .. 0.83
   3 ?   -3.2   0.0       6.3   9.4e+03      60      72 ..     314     326 ..     308     330 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00089
                                      EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEE CS
                               Roc  2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltk 39
                                      ++ +G sg+GK+  lk+fv++  +e +++ + +d +t 
  gi|300712798|ref|YP_003738610.1| 38 LLTLGASGAGKSETLKHFVDQLQNEPNEPVVVYDHKTD 75
                                      5789****************999999999998887764 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.9
                                       EEEEE-SGGCTTTT-HH CS
                               Roc  59 niWDtaGqerfrslhpl 75 
                                       ++W  aG + f ++ ++
  gi|300712798|ref|YP_003738610.1| 131 DFWNAAGRQLFAATLKY 147
                                       68*******99998765 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.3
                                       EEEE-SGGCTTTT CS
                               Roc  60 iWDtaGqerfrsl 72 
                                       + Dt G+er ++l
  gi|300712798|ref|YP_003738610.1| 314 LEDTYGKERAHAL 326
                                       5599999999986 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00029      0.43      23      65 ..      25      67 ..       3      81 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00029
                             AAA_7 23 syllelllknkkpvllvGptGtGKtviikdllkkldkekylsl 65
                                      s++++ +   ++++l  G +G GK+ ++k+++++l++e   ++
  gi|300712798|ref|YP_003738610.1| 25 SWFVRGMRIPRRSLLTLGASGAGKSETLKHFVDQLQNEPNEPV 67
                                      46666677778999*********************98766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2819.73
//
Query:       gi|300712799|ref|YP_003738611.1|  [L=115]
Description: hypothetical protein HacjB3_17388 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 900.45
//
Query:       gi|300712800|ref|YP_003738612.1|  [L=148]
Description: hypothetical protein HacjB3_17393 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-07   31.6   1.4    3.2e-07   30.0   1.4    1.9  1  RHH_1           Ribbon-helix-helix protein, copG family
  ------ inclusion threshold ------
      0.013   16.0   0.1      0.039   14.5   0.0    1.8  2  CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin sys
      0.014   15.3   0.3      0.027   14.3   0.3    1.5  1  RHH_4           Ribbon-helix-helix domain
      0.027   13.3  15.8      0.031   13.1  15.8    1.1  1  CALCOCO1        Calcium binding and coiled-coil domain (CALCO
      0.048   11.6   5.7      0.051   11.5   5.7    1.0  1  V_ATPase_I      V-type ATPase 116kDa subunit family
      0.049   14.5   0.5      0.085   13.8   0.5    1.4  1  CSN5_C          Cop9 signalosome subunit 5 C-terminal domain
      0.057   12.8   2.9      0.057   12.8   2.0    1.4  1  Bul1_C          Bul1 C terminus
      0.061   12.7   5.5       0.08   12.3   5.5    1.1  1  DUF4407         Domain of unknown function (DUF4407)
      0.064   13.3   1.4      0.078   13.0   1.4    1.3  1  Laminin_II      Laminin Domain II
      0.088   12.8   2.6       0.11   12.5   2.6    1.2  1  DUF1796         Putative papain-like cysteine peptidase (DUF1
       0.12   11.9   6.7       0.16   11.5   6.7    1.3  1  HAUS6_N         HAUS augmin-like complex subunit 6 N-terminus
       0.18   11.3   7.8       0.22   11.1   7.8    1.0  1  Exonuc_VII_L    Exonuclease VII, large subunit
       0.18   11.3  11.8      0.078   12.5   9.6    1.5  2  Paralemmin      Paralemmin
       0.41    9.6   7.3        0.3   10.0   5.4    1.6  1  DUF3987         Protein of unknown function (DUF3987)
       0.53   10.1   7.3        0.7    9.7   7.3    1.2  1  DUF724          Protein of unknown function (DUF724)
       0.81    8.4   3.4       0.89    8.3   3.4    1.2  1  Fungal_trans_2  Fungal specific transcription factor domain
        1.9    7.0   6.3        2.3    6.7   6.3    1.1  1  FapA            Flagellar Assembly Protein A
        3.4    7.3  12.3        4.5    6.9  12.3    1.1  1  LUC7            LUC7 N_terminus
        3.5    7.0  18.7        5.9    6.3  18.1    1.5  2  HMMR_N          Hyaluronan mediated motility receptor N-termi
        4.3    8.0   9.5        7.5    7.3   9.1    1.7  1  YabA            Initiation control protein YabA
        5.4    7.1  19.6       0.42   10.7   7.3    2.0  2  UPF0242         Uncharacterised protein family (UPF0242) N-te
        6.2    6.5   7.1          7    6.4   7.1    1.1  1  AAA_11          AAA domain


Domain annotation for each model (and alignments):
>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   1.4   3.9e-10   3.2e-07       2      38 ..       4      40 ..       3      41 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 3.9e-10
                                      EEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH CS
                             RHH_1  2 vsirldeellerLdelarrrgrSrSelIReAlreyle 38
                                      +++rl+e++l++L   a++rg SrSe IRe +re++e
  gi|300712800|ref|YP_003738612.1|  4 TTLRLSESTLDTLADEADERGLSRSEYIREIIRERHE 40
                                      79********************************987 PP

>> CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.8e-05     0.039      46      78 ..       5      37 ..       1      38 [. 0.94
   2 ?   -2.2   0.0       7.5   6.1e+03      11      24 ..     103     117 ..      96     124 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.8e-05
                    CopG_antitoxin 46 slrlpedlLealkekAnkrdvpyqslikellee 78
                                      +lrl+e+ L++l  +A +r+++ +++i+e+++e
  gi|300712800|ref|YP_003738612.1|  5 TLRLSESTLDTLADEADERGLSRSEYIREIIRE 37
                                      79****************************998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7.5
                    CopG_antitoxin  11 eeeeFwe.khDlsey 24 
                                       e  e++e +  l++y
  gi|300712800|ref|YP_003738612.1| 103 ELVEYVEeQRELTQY 117
                                       444444314456666 PP

>> RHH_4  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3   3.4e-05     0.027      13      51 ..       4      42 ..       2      50 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.4e-05
                                      EEEEEEHHHHHHHHHHHHHTT--HHHHHHHH.HHHHSS. CS
                             RHH_4 13 TSirLEpafWdaLeeiArregltvnaLiaeidadrrgea 51
                                      T++rL ++  d+L + A ++gl+ ++ i ei ++r+++ 
  gi|300712800|ref|YP_003738612.1|  4 TTLRLSESTLDTLADEADERGLSRSEYIREIIRERHEDD 42
                                      99*****************************77776654 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  15.8   3.8e-05     0.031      95     197 ..      30     131 ..       6     141 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
                          CALCOCO1  95 kveeleekqkelerlseelaeeksalleakeesearirELEeDiktltqralekEteLeRlkerakkalaqrkeeea 171
                                        ++e+ ++++e +rl++ l ++ +++++   + e +ir+ Ee i+   +r  + Ete eR++++ + +l+qr e+ +
  gi|300712800|ref|YP_003738612.1|  30 YIREIIRERHEDDRLHDRLRADYERQIT---DYEEKIRDYEEQIRDYEERITDLETENERIHNEKRLILEQREENTE 103
                                       4455555555555555555544444333...3344556666666666666666666666665555555555444333 PP

                          CALCOCO1 172 ..erkqlqakleqseeelrslskelqel 197
                                         e  + q +l q +e  ++l  e + l
  gi|300712800|ref|YP_003738612.1| 104 lvEYVEEQRELTQYQERRQRLLDEANIL 131
                                       2234444555555555555555555555 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.7   6.3e-05     0.051      54     132 ..      39     118 ..      10     138 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.3e-05
                        V_ATPase_I  54 ikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelka.vlekakefleeeeeeeeeeese 129
                                       +++++ +++l+a+ e+++ ++ee+++++ee++++ +e  ++l++e ++++++k  +le+ +e  e  e  ee++e +
  gi|300712800|ref|YP_003738612.1|  39 HEDDRLHDRLRADYERQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRlILEQREENTELVEYVEEQRELT 115
                                       22333367778888888888888888888888888888888888877776554404444444443323333332222 PP

                        V_ATPase_I 130 eee 132
                                       + +
  gi|300712800|ref|YP_003738612.1| 116 QYQ 118
                                       222 PP

>> CSN5_C  Cop9 signalosome subunit 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5    0.0001     0.085      13      71 ..      53     115 ..      48     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.0001
                            CSN5_C  13 tkqisDLaeKlekaessvsrsrsaagtlseeaseaeekkk....kkkedsqLakvvkdstkia 71 
                                        +qi+D +eK+++ e++++  ++++  l++e+++ +++k+    +++e+++L   v++ + ++
  gi|300712800|ref|YP_003738612.1|  53 ERQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRlileQREENTELVEYVEEQRELT 115
                                       57***********************99999888888888799999999999999998877765 PP

>> Bul1_C  Bul1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.0   6.9e-05     0.057      80     121 ..      52      93 ..      41     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.9e-05
                            Bul1_C  80 ikktfkefekkikeykkkfeenkeklneLynlsreistkreL 121
                                        ++  +++e+ki++y++++++ +e++++L  ++++i++++ L
  gi|300712800|ref|YP_003738612.1|  52 YERQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRL 93 
                                       556778899999999999999999999999988888877766 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   5.5   9.8e-05      0.08     114     205 ..      36     127 ..      28     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.8e-05
                           DUF4407 114 eeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk....gtgttgvaGkgpaak 186
                                       +e++ e ++l ++l+a+++ ++++ e++i++ +++i+  e+r+++l++e ++  + ++    + +    + +  ++ 
  gi|300712800|ref|YP_003738612.1|  36 RERH-EDDRLHDRLRADYERQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRlileQRE---ENTELVEYV 108
                                       3333.446788999*******************************99999966665559875222...456788999 PP

                           DUF4407 187 ekkaqldaaqaelaelkak 205
                                       e +++l+++q++ + l ++
  gi|300712800|ref|YP_003738612.1| 109 EEQRELTQYQERRQRLLDE 127
                                       9999999999998887665 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.4   9.5e-05     0.078      37      99 ..      53     115 ..      15     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.5e-05
                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHH.HHHHHH...HHHHHHHHHHHH CS
                        Laminin_II  37 nrsveetnekvkdankairdArrsvkkLeklapqLldklkel.kqleeassslsdniseikelI 99 
                                       +r++   +ek++d+ ++ird ++ + +Le + +++ +  + + +q+ee+   l + ++e +el 
  gi|300712800|ref|YP_003738612.1|  53 ERQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRLIlEQREEN-TELVEYVEEQRELT 115
                                       456667899**************************98755541555555.55999999999986 PP

>> DUF1796  Putative papain-like cysteine peptidase (DUF1796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.6   0.00013      0.11      50     141 ..       1     105 [.       1     131 [. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
                           DUF1796  50 ldpeqlesassssdaavtearsrfipdpvkvwllfrnqhallfthhDl..anneevkakfrrrirrfeallssperk 124
                                       ++p+ l++  s+ d  ++ea +r  +  + +  ++r++h      hD   a +e+    ++++ir +e+ + + e++
  gi|300712800|ref|YP_003738612.1|   1 MNPTTLRLSESTLDTLADEADERGLSRSEYIREIIRERHED-DRLHDRlrADYERQITDYEEKIRDYEEQIRDYEER 76 
                                       567888888888899999999999*****************.*****999888888889999999999999888877 PP

                           DUF1796 125 vlFirtviaenka............kell 141
                                       ++ + t+ ++ ++            +el+
  gi|300712800|ref|YP_003738612.1|  77 ITDLETENERIHNekrlileqreenTELV 105
                                       77777764433333334433332222333 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   6.7    0.0002      0.16     145     219 ..      41     113 ..      14     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
                           HAUS6_N 145 lsklvaahrvslrrflrekaaadrarqkyqenaqllekkerelraeleelqaelkae.keaakkekkeasedaeee 219
                                         +l+ + r+ ++r++++++++   +++y+e+ + +e+++ +l++e+e++++e ++  +++++++++ +  ++++e
  gi|300712800|ref|YP_003738612.1|  41 DDRLHDRLRADYERQITDYEEK---IRDYEEQIRDYEERITDLETENERIHNEKRLIlEQREENTELVEYVEEQRE 113
                                       4677889999************...9*************************9888775233333333333333222 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.8   0.00027      0.22     162     267 ..      33     133 ..       4     135 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                      Exonuc_VII_L 162 rlleekkqrleklasrlk.speellerkrqrldeleerleralkkq...lkkkrerleelkerlkekleekkerl.k 233
                                       + ++ ++++ ++l+ rl+ + e+++++ +++++++ee+++   +++   l++++er+++ k rl          + +
  gi|300712800|ref|YP_003738612.1|  33 EIIR-ERHEDDRLHDRLRaDYERQITDYEEKIRDYEEQIRDY-EERitdLETENERIHNEK-RL----------IlE 96 
                                       2222.2233344555554455555555555555555555552.222133334444444433.22..........122 PP

                      Exonuc_VII_L 234 klkerle...lleekkerleeleeklealsplkvLkr 267
                                       +++e++e    +ee++e  + +e++ ++l+  ++L+r
  gi|300712800|ref|YP_003738612.1|  97 QREENTElveYVEEQRELTQYQERRQRLLDEANILRR 133
                                       2222222333466666666667777777777777766 PP

>> Paralemmin  Paralemmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         3   2.4e+03     148     167 ..       8      27 ..       5      47 .. 0.66
   2 ?   12.5   9.6   9.6e-05     0.078       2      65 ..      54     117 ..      53     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3
                        Paralemmin 148 lSSseVdeLihkadevtlvs 167
                                       lS s  d L + ade  l +
  gi|300712800|ref|YP_003738612.1|   8 LSESTLDTLADEADERGLSR 27 
                                       77788888888888877732 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9.6e-05
                        Paralemmin   2 kqleedeakvrkLEesiqrLekeieeLeseesaisakeevlaeklketeksvedlqksllstdk 65 
                                       +q+ + e+k+r  Ee+i+  e+ i+ Le+e+  i +++  + e+ +e+++ ve ++++   t+ 
  gi|300712800|ref|YP_003738612.1|  54 RQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRLILEQREENTELVEYVEEQRELTQY 117
                                       8999*******************************99999999999999988877655443333 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.4   0.00037       0.3      62     101 ..      43      88 ..      42     112 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00037
                           DUF3987  62 eieaelreeyeeelkeyeaekkaweaelealekkaakak......e 101
                                       +++++lr+ ye+++ +ye++ + +e++++ +e+++++ +      +
  gi|300712800|ref|YP_003738612.1|  43 RLHDRLRADYERQITDYEEKIRDYEEQIRDYEERITDLEteneriH 88 
                                       689***************************9999998876443331 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.3   0.00086       0.7      95     172 ..      32     116 ..      26     129 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00086
                            DUF724  95 nkLlslkdeqtkllee.rkklekkieeeesekrkleeeidelekkilelerqlallk.......ekkeaadkeiarl 163
                                       ++++  ++e ++l+++ r ++e++i++ e++ r +ee+i++ e++i +le++++++        e + +++ e+++ 
  gi|300712800|ref|YP_003738612.1|  32 REIIRERHEDDRLHDRlRADYERQITDYEEKIRDYEEQIRDYEERITDLETENERIHnekrlilE-QREENTELVEY 107
                                       555555666666666525789********************************998877777743.33444555555 PP

                            DUF724 164 kseaeklee 172
                                         e+++l +
  gi|300712800|ref|YP_003738612.1| 108 VEEQRELTQ 116
                                       555555544 PP

>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.4    0.0011      0.89     207     259 ..      38      94 ..      16     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0011
                    Fungal_trans_2 207 arekrsarkd....seleplsileeaseleqrllswkprssdlepdldeterassls 259
                                       + e ++ +++    +e++ +++ e++++ e++++++++r++dle++ +  +++++l 
  gi|300712800|ref|YP_003738612.1|  38 RHEDDRLHDRlradYERQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRLI 94 
                                       3333333333666699999**************************999999998876 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.3    0.0028       2.3     334     406 ..      51     123 ..      41     140 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0028
                              FapA 334 elkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelke 406
                                       ++ +++++ ee+++++ee++++++++i+ l+ ++++   e++   ++ +  +++ +++ee +el++ +++ + 
  gi|300712800|ref|YP_003738612.1|  51 DYERQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRLILEQREENTELVEYVEEQRELTQYQERRQR 123
                                       5667778888888888888888888888888755544444444444444444444444444444443333333 PP

>> LUC7  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  12.3    0.0055       4.5      61     143 ..      45     129 ..      37     133 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0055
                                       HHHHHHHHHHHH-XXXXX..XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXX CS
                              LUC7  61 HdeelkeeYeearkskkk..lgyeeeflrfleklledv...drkiqkgkqrleltqeekeeeeeakakkqeqlkele 132
                                       H ++l+++Ye++ +++++  + yee++ ++ e++ +d+   +++i+ +++rl l+q+e+++e  +  ++q++l +++
  gi|300712800|ref|YP_003738612.1|  45 H-DRLRADYERQITDYEEkiRDYEEQIRDYEERI-TDLeteNERIH-NEKRLILEQREENTELVEYVEEQRELTQYQ 118
                                       5.579*****998888767799999877666664.44411145664.67789999999988888778********** PP

                                       XXXXXXXXXXX CS
                              LUC7 133 ekiekllaeae 143
                                       e+ + ll+ea+
  gi|300712800|ref|YP_003738612.1| 119 ERRQRLLDEAN 129
                                       *******9997 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.061        50      75     110 ..      17      54 ..       8      55 .. 0.77
   2 ?    6.3  18.1    0.0072       5.9     217     316 ..      37     130 ..      28     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.061
                            HMMR_N  75 kekkkqkeLEke..iRsLvqergeqdkrlqaleeelkk 110
                                       +++ + + L +   iR++++er e d+ +  l ++ ++
  gi|300712800|ref|YP_003738612.1|  17 ADEADERGLSRSeyIREIIRERHEDDRLHDRLRADYER 54 
                                       55556666655446**************9999988776 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0072
                            HMMR_N 217 kekieekseteklleyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekcklle 293
                                       + +++++ + +   +y  ++    e++  y+++i+ +ee +   + e e     +++++  + +q ++ +e ++ +e
  gi|300712800|ref|YP_003738612.1|  37 ERHEDDRLHDRLRADYERQITDYEEKIRDYEEQIRDYEERITDLETENER----IHNEKRLILEQREENTELVEYVE 109
                                       45678888888888999999999999999999999999999888888885....5556666889999********** PP

                            HMMR_N 294 kekeelvreeeekeqtlsaElee 316
                                       +++e  +++++e++q+l  E + 
  gi|300712800|ref|YP_003738612.1| 110 EQRE--LTQYQERRQRLLDEANI 130
                                       ****..**********9999765 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.1    0.0092       7.5       8      53 ..      54     104 ..      39     129 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0092
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....X CS
                              YabA   8 dkleeleeqleelleeleelkeelaelleenaeLeleneklrerl.....e 53 
                                       +++++ ee++++  e++++ +e++++l  en++++ e++ + e+       
  gi|300712800|ref|YP_003738612.1|  54 RQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRLILEQReenteL 104
                                       455666666666666666666666666666666666644333333221110 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   7.3   0.00052      0.42      86     163 ..       8      82 ..       2      90 .. 0.87
   2 ?    0.6   7.8      0.65   5.3e+02      81     122 ..      84     124 ..      79     135 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
                           UPF0242  86 tkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqr 162
                                         e +l  l +e +e+    ++  +e+ r ++e+  L+ +l a   d+e++  ++ee+++  +e++ +y+e i+++ 
  gi|300712800|ref|YP_003738612.1|   8 LSESTLDTLADEADERGLSRSEYIREIIRERHEDDRLHDRLRA---DYERQITDYEEKIRDYEEQIRDYEERITDLE 81 
                                       56778889999999999999988999999999999***99999...***************************9986 PP

                           UPF0242 163 s 163
                                        
  gi|300712800|ref|YP_003738612.1|  82 T 82 
                                       5 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.65
                           UPF0242  81 deglktkeealeelqeeeeeLkeeldakeeelerlkeenqqL 122
                                       +e +++++  + e +ee+ eL e +++ ++el +++e+ q L
  gi|300712800|ref|YP_003738612.1|  84 NERIHNEKRLILEQREENTELVEYVEE-QRELTQYQERRQRL 124
                                       234444444444445555555443333.23333333333333 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   7.1    0.0085         7     106     198 ..      37     130 ..       2     132 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0085
                            AAA_11 106 svsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskele 182
                                       + + + ++++rl++  + ++  + +++++++++++r+ ee +++ ++++++ +++++l  e+r+ + e  e+ +e +
  gi|300712800|ref|YP_003738612.1|  37 ERHEDDRLHDRLRAD-YERQITDYEEKIRDYEEQIRDYEERITDLETENERIHNEKRLILEQREENTELVEYVEEQR 112
                                       222233333333222.4455555566666666666666666655444444444444444444444444333333333 PP

                            AAA_11 183 eaeesle.....eevldeaei 198
                                       e +   +     + +ldea+i
  gi|300712800|ref|YP_003738612.1| 113 ELT---QyqerrQRLLDEANI 130
                                       222...122233888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1990  (0.110993); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.49u 0.31s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1060.64
//
Query:       gi|300712801|ref|YP_003738613.1|  [L=577]
Description: hypothetical protein HacjB3_17398 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   38.3   0.0    3.5e-09   36.6   0.0    1.8  1  DDE_Tnp_1  Transposase DDE domain
    0.00099   19.1   0.2      0.046   13.7   0.0    2.5  2  DUF772     Transposase domain (DUF772)
  ------ inclusion threshold ------
      0.052   12.3   0.3       0.08   11.6   0.3    1.2  1  GATase_2   Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   5.9e-13   3.5e-09      68     214 .]     377     538 ..     296     538 .. 0.67

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 5.9e-13
                         DDE_Tnp_1  68 lldelrpr.....kgklvlaDaGYasaelldtleekgvdyiirl.......kkntklyrk................. 115
                                       l+ +l +r     + + v  D+G+  ++++ +++e+g+ y++++                                 
  gi|300712801|ref|YP_003738613.1| 377 LVSRLLDRaeqfvDLDMVMFDRGFYANRVYADVDERGLTYLSPVptyeddlA-------Aiqdiqkhptadaavkhd 446
                                       44444444455599******************************44432220.......122334444343333443 PP

                         DDE_Tnp_1 116 gaeskrrgrlrkhdrnkiltksqkrrnkskkekgdvyyvtntnsellsaeev...aelyrlRwqiErvFkwlkrkfg 189
                                              +  +k+    ++++s+ +++k        y v++tn +++++ee+   ++ y++Rw iE+  k++k+ f 
  gi|300712801|ref|YP_003738613.1| 447 VPFGIDGDVHHKAEFLYTPSTSDDADGK--------YAVFVTNQDHVEPEEIasvVNGYSRRWDIENQYKSIKD-FL 514
                                       3444455556666666666666666666........**************96222578****************.65 PP

                         DDE_Tnp_1 190 ldrlryrglnrveaqllllllalnl 214
                                         ++++ +++   +++ l +l++nl
  gi|300712801|ref|YP_003738613.1| 515 -PKTSSTDYRLRLCNFALSTLIYNL 538
                                       .888888999999999999999997 PP

>> DUF772  Transposase domain (DUF772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   7.7e-06     0.046      10      72 ..      56     120 ..      49     121 .. 0.94
   2 ?    2.7   0.0     0.022   1.3e+02      38      66 ..     214     242 ..     207     250 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.7e-06
                            DUF772  10 mlkllllqylyglSdreleealrenlsfrwflgldlee.dpvpdhstlsrfRkrlee.lerlfee 72 
                                       m++ ll++ + g+S  el+++l + +++     +d+++ +++p +  ls +  ++ e  ++++++
  gi|300712801|ref|YP_003738613.1|  56 MFRTLLFKGIRGISQNELAQQLGRKPTLVKSFHFDITDlKKTPTQQQLSYTHAQFSEdTQEVLNR 120
                                       9**************************************99**********99999999999876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.022
                            DUF772  38 rwflgldleedpvpdhstlsrfRkrlee....l 66 
                                        w+ +    +d ++d st+ r  k++++    +
  gi|300712801|ref|YP_003738613.1| 214 GWLTD----DDLTCDDSTFLRAIKKIATpedsD 242
                                       56666....699*************99877653 PP

>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   1.3e-05      0.08      87     169 ..     105     188 ..      75     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
                                       HHHHHHHHHHHHHTT-EEEEEEE--B-GGGS-HHHHHH--EEEEEEEE-TT-.--HHHHHHHHHHHHHHHGGG.... CS
                          GATase_2  87 eeakkileeiveeeglevlgwRevpvdksvlgeaakesePsieqvfvekked.lseeelerklyviRkriekeiakk 162
                                        +  +  e++ e  + +v g R+v +d++v+ ea   s P+ ++  v+++++  ++e+ +++l ++Rk++  e+ ++
  gi|300712801|ref|YP_003738613.1| 105 YTHAQFSEDTQEVLNRTVAGVRQVALDNDVVTEALVPSVPTETEEEVSQSTSeYKKEKAQKTLTLARKHVIPEFDTH 181
                                       33344445566668999***********************987777765554399999************9999988 PP

                                       .-BTTBE CS
                          GATase_2 163 kaekefY 169
                                       +a+++ Y
  gi|300712801|ref|YP_003738613.1| 182 RAAHKTY 188
                                       8888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4104.81
//
Query:       gi|300712802|ref|YP_003738614.1|  [L=196]
Description: hypothetical protein HacjB3_17403 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1469.89
//
Query:       gi|300712803|ref|YP_003738615.1|  [L=496]
Description: potassium transport system protein trkH3 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-66  223.5  14.2    1.6e-65  221.5  14.2    1.7  1  TrkH       Cation transport protein
  ------ inclusion threshold ------
       0.06   13.1   0.1        4.5    7.0   0.0    3.2  3  Neurensin  Neurensin


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.5  14.2   1.8e-69   1.6e-65      64     489 ..     101     484 ..      86     490 .. 0.92

  Alignments for each domain:
  == domain 1  score: 221.5 bits;  conditional E-value: 1.8e-69
                              TrkH  64 ldalfeavsgltttglsvivveeslprsgltlraqlqqiGglgvvvlaylslptlg..rgsaflylseaqkeelggk 138
                                       lda+fe++sg+t tgl+++ ve++lprs+ ++r++++++Gg+gv+vl++++l + g  +gs+ ly+sea    +++k
  gi|300712803|ref|YP_003738615.1| 101 LDAVFESMSGFTGTGLTMAAVEDKLPRSIHWWRSFIEWVGGVGVIVLTVAILHRGGgsSGSYTLYESEA----RSEK 173
                                       89**************************************************887779***********....9*** PP

                              TrkH 139 elrslselikilvvyyvgleilafvllvvliytakaysevvdstgvsplwwaffhsmSafnnlGfsltpnSlasfnk 215
                                        ++s+  +++ +++++vgl+i +++l+            ++      plw+a++h+m+++ ++Gfs++++S++ +++
  gi|300712803|ref|YP_003738615.1| 174 IHPSIVTTVQEIWKIFVGLTIGSIILF---------LLVGM------PLWDAINHGMTGIATGGFSVHGASIGHYDS 235
                                       ***************************.........88899......****************************** PP

                              TrkH 216 nivillvaiifiilGnigFpillrviiaikkkilrdlkqikeslsflldlprrcftLllasgfvwllllelavlnvt 292
                                        ++i+ ++++++++G i+Fpi++ ++    k  lr         +f+ dl++r+ ++ +  g + l+++  a     
  gi|300712803|ref|YP_003738615.1| 236 -PLIEYAVVPVMFAGSIAFPIHYLIF----KGELR---------NFYADLQTRWVFIWFTAGSLALAAILYA----- 293
                                       .*********************9765....34444.........599********66666666666555433..... PP

                              TrkH 293 dnilfilldegslvvksipkgsrvlkalFqsvstrta.GFsvvdlsn.....lhpaikvllvlmmyigglpgStagg 363
                                                  +   + ++    +++++Fq vs+ +  GF +  ++      + +   +++ l m  gg++gSt+ g
  gi|300712803|ref|YP_003738615.1| 294 -----------NGQYDTLE--HTFRASVFQFVSAVSNtGFGTETIGGgtdrvWDTGATLFMCLGMLTGGAAGSTTSG 357
                                       ...........45556666..78999*********999*****99843344499999******************** PP

                              TrkH 364 Irrtnvyeefslgkyeieqekepk.avskksidgkhlerqllvdlws....lflvlliilileglklsdvqepdfsf 435
                                       ++++++ ++f+   ++i++ +ep+ a++  +i+ ++l ++     +     +f++++++li+ + +l  v  p   +
  gi|300712803|ref|YP_003738615.1| 358 LKIIRMVTLFKGTAWQIRDVFEPSsAIRYLKIGDRRLSEEQAQREYTeatvVFILWILFLIIGVAVLLRVLSPGHPL 434
                                       **********************************************9999999************************ PP

                              TrkH 436 fdiLfevvSaygtvGLSlGaknaslsaqlttisklvlialmirGrlrglpvlld 489
                                        +++f v+Sa+ +vGL +G    ++ +++++ +k++li++m++Grl+++pv+++
  gi|300712803|ref|YP_003738615.1| 435 EYVIFDVMSAQSNVGLDSG----ITGPTMPDTAKAMLIINMWVGRLEIIPVAVL 484
                                       *******************....****************************996 PP

>> Neurensin  Neurensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.061   5.5e+02      44      95 ..      55     104 ..      39     121 .. 0.68
   2 ?    0.7   0.0     0.045     4e+02      36      56 ..     181     205 ..     160     207 .. 0.60
   3 ?    7.0   0.0    0.0005       4.5      29      60 ..     394     425 ..     378     446 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.061
                         Neurensin  44 slvvgtlvlllGvtallvGylvprrlelvksegelvvvDkqaiefnnaLdtl 95 
                                       +++ +++  l G+ +llv ++++     ++   +  ++D+  + f n Ld++
  gi|300712803|ref|YP_003738615.1|  55 ATAWAVIGFLGGLPFLLVAWTIQIDP--FPVWMNTPPMDDTTVIFLNPLDAV 104
                                       55556666677888888888776444..444778899999999999999976 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.045
                         Neurensin  36 sesllwkv..slvvg..tlvlllGv 56 
                                          ++wk+   l++g  +l+ll+G+
  gi|300712803|ref|YP_003738615.1| 181 TVQEIWKIfvGLTIGsiILFLLVGM 205
                                       5567899877566662245666665 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0005
                         Neurensin  29 lqrakqksesllwkvslvvgtlvlllGvtall 60 
                                       l + ++++e++ + v +++ +l+l++Gv++ll
  gi|300712803|ref|YP_003738615.1| 394 LSEEQAQREYTEATVVFILWILFLIIGVAVLL 425
                                       5566677999999****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 3250.58
//
Query:       gi|300712804|ref|YP_003738616.1|  [L=380]
Description: hypothetical protein HacjB3_17413 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-06   27.3  12.6    0.00031   21.3   3.3    3.2  2  Usp        Universal stress protein family
  ------ inclusion threshold ------
        1.3    9.1   5.9        2.6    8.1   0.2    2.6  2  ApoLp-III  Apolipophorin-III precursor (apoLp-III)


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   1.9    0.0002       1.8      18     139 ..      60     194 ..      56     194 .. 0.72
   2 !   21.3   3.3   3.4e-08   0.00031       3     138 ..     228     349 ..     226     352 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0002
                                       HHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.............HHHHHHCTTCE CS
                               Usp  18 AlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.............akaaaeaggvk 81 
                                        l+ A++la+++++++ l+     ++ +a    +e ++ e  + + + ++ +a              ++++++g+ +
  gi|300712804|ref|YP_003738616.1|  60 FLRTAVALAADNDGRVLLVGMEAVQDESALEPVREYVQSEDPAASDKPKVVEAiedrqtqlaemadVAQELDPGVSV 136
                                       68999999999999988887777777777777777777776666666666666888999999999666666666666 PP

                                       EEEEEEESSHHHHHHHHHHHTTSSEEEEESCCSSTTTT.CSSBHHHHHHHHHTSSEEEE CS
                               Usp  82 vevvveegdpaeeilevaeeedadliVvGsrgrsglsr.lllGSvseyvlrhapcpVlv 139
                                       +  v+ + d   +il v++  +   ++   rg +  ++ ll  S+ + +l++a+c+V v
  gi|300712804|ref|YP_003738616.1| 137 TASVRAVSDITSGILSVVNGGNETAVL-LLRGTGLDEGwLLNRSTVDTILAEAECDVFV 194
                                       666666677777777777665555555.5566366666566778*************87 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 3.4e-08
                                       SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
                               Usp   3 krIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeagg 79 
                                       + Il++v   +++  A+e A + a++ +a +++lhvi+p+as+++  + e+  + +    +               +
  gi|300712804|ref|YP_003738616.1| 228 DSILLPVGAGPHAALAAEAARAVARHANASVTVLHVISPDASAEATGEGEDLLKFADYVLGS-------------DV 291
                                       68*****************************************9999999999999999887.............46 PP

                                       CEEEEEEEESSHHHHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEE CS
                               Usp  80 vkvevvveegdpaeeilevaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVl 138
                                        +++   +  d a++i++ a+++d   i     + s+l++++  Sv e v +  +  Vl
  gi|300712804|ref|YP_003738616.1| 292 TTETELKTASDTADVIVQQAKDHDFVSIGAPEQK-SRLKKIVYESVQETVSELNEATVL 349
                                       7777888888888999988888766666666666.899999999999998876666666 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2   0.00029       2.6      32      85 ..      86     138 ..      80     155 .. 0.84
   2 ?    2.6   1.2     0.015   1.3e+02      45     107 ..     293     347 ..     281     370 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00029
                         ApoLp-III  32 enlvdqlkqvikslqeelkkksdeleealkevkkkieetadklseenPevkkka 85 
                                       e++++ ++++ +s ++++ +k +++ ea+++ +++++e+ad  +e +P+v   a
  gi|300712804|ref|YP_003738616.1|  86 ESALEPVREYVQSEDPAASDK-PKVVEAIEDRQTQLAEMADVAQELDPGVSVTA 138
                                       567888999999888877766.69*****************9999999987555 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.015
                         ApoLp-III  45 lqeelkkksdeleealkevkkkieetadklseenPevkkkaqelqekvQsgvqslvkesqkla 107
                                       ++ elk++sd+++ +++++k+      d +s   Pe k   + l++ v ++vq++v+e +++ 
  gi|300712804|ref|YP_003738616.1| 293 TETELKTASDTADVIVQQAKDH-----DFVSIGAPEQK---SRLKKIVYESVQETVSELNEAT 347
                                       5667788888877777777763.....55555555544...4455555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2566.82
//
Query:       gi|300712805|ref|YP_003738617.1|  [L=221]
Description: TrkA-N domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-26   91.7   3.5    4.3e-26   91.4   2.4    1.7  2  TrkA_N           TrkA-N domain
    1.6e-12   47.1   2.3    2.7e-12   46.3   0.4    2.2  2  TrkA_C           TrkA-C domain
    7.6e-07   29.5   0.7    1.2e-06   28.8   0.7    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    1.5e-06   28.3   0.2    2.6e-06   27.5   0.2    1.5  1  NAD_binding_10   NAD(P)H-binding
    4.1e-06   26.9   0.2    5.7e-06   26.4   0.2    1.3  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    2.4e-05   24.8   0.2    6.4e-05   23.5   0.2    1.8  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    0.00013   21.6   0.4    0.00033   20.3   0.4    1.6  1  NmrA             NmrA-like family
     0.0011   19.1   1.1     0.0019   18.3   1.1    1.4  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
     0.0021   18.0   0.3     0.0035   17.3   0.3    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.003   16.9   1.4     0.0044   16.3   1.4    1.2  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0035   17.9   0.6      0.025   15.2   0.2    2.2  2  PglD_N           PglD N-terminal domain
     0.0042   17.5   0.5     0.0067   16.8   0.2    1.5  1  NAD_binding_7    Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.014   15.9   0.2      0.019   15.4   0.2    1.4  1  XdhC_C           XdhC Rossmann domain
      0.018   15.4   0.4      0.044   14.1   0.4    1.9  1  Gp_dh_N          Glyceraldehyde 3-phosphate dehydrogenase, NA
      0.028   13.7   0.2      0.039   13.2   0.2    1.3  1  Thi4             Thi4 family
      0.034   14.3   0.0       0.74    9.9   0.0    2.0  2  HDPD             Bacteriophage lambda head decoration protein
      0.049   14.5   0.2       0.16   12.8   0.2    1.9  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
      0.055   12.7   0.3      0.091   12.0   0.3    1.4  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.096   12.0   0.1       0.14   11.5   0.1    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
        0.1   12.8   0.0       0.35   11.1   0.0    1.9  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
       0.14   11.7   0.1       0.19   11.3   0.1    1.3  1  DAO              FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   2.4   5.1e-29   4.3e-26       1     116 []       3     118 ..       3     118 .. 0.95
   2 ?   -2.2   0.0       5.6   4.7e+03      87     100 ..     172     185 ..     161     192 .. 0.58

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 5.1e-29
                                       EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTT.SEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHH CS
                            TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeg.levvvgdatdeevLeeagiekadaviaatgddea 75 
                                       +iiiG+Gr+Gr++++  ++ ++ +vvvi++d e +ee+++   ++v+++da++++++ eag+e+ada+i +t++d +
  gi|300712805|ref|YP_003738617.1|   3 VIIIGAGRTGRTVIDLATQdDH-EVVVIERDTEIAEEVSATYdCMVINADAASKDIMLEAGVEEADALISTTESDSV 78 
                                       79*****************666.6***************999999******************************** PP

                                       HHHHHHHHHHHTSSSEEEEEESSGGGHHHHHHHTTSEEEEH CS
                            TrkA_N  76 nilavllakelnpkkkiiaraqdpehaellkklgadvvisp 116
                                       n+++++  k+  +  + ++ ++dp+h el+++lg++ v sp
  gi|300712805|ref|YP_003738617.1|  79 NLMVTMFGKQ-YEVETLVSSINDPAHMELFEDLGVNIVESP 118
                                       *********8.55589********************99876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.6
                                       TSSSEEEEEESSGG CS
                            TrkA_N  87 npkkkiiaraqdpe 100
                                        p+ +ii+ + +++
  gi|300712805|ref|YP_003738617.1| 172 LPEETIIVAIVRDD 185
                                       44444443333333 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1       1.2   9.9e+02      14      46 ..      12      34 ..       3      41 .. 0.55
   2 !   46.3   0.4   3.2e-15   2.7e-12       1      58 [.     147     207 ..     147     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
                                      TSBHHHHTHHHH.S-EEEEEE-T-EEES--TT-B CS
                            TrkA_C 14 Gktlkelnlrar.gvlvvairRggeliipsgdtv 46
                                      G+t+ +  l +  +  vv i R+         t+
  gi|300712805|ref|YP_003738617.1| 12 GRTVID--LATQdDHEVVVIERD---------TE 34
                                      455555..333334444444444.........44 PP

  == domain 2  score: 46.3 bits;  conditional E-value: 3.2e-15
                                       CEEEEEE--GGGTTSBHHHHT....HHHHS-EEEEEE-T-EEES--TT-B--TT-EEEEEEE CS
                            TrkA_C   1 lvevtvpagsplvGktlkeln....lrargvlvvairRggeliipsgdtvLeeGDvllvvgs 58 
                                       ++e tv  g+p++G +l +++    l++   ++vai+R++el ip g+t++e+GDv+++++ 
  gi|300712805|ref|YP_003738617.1| 147 IFEATVEDGAPIAGLSLIDADredlLPE-ETIIVAIVRDDELHIPKGETEIEPGDVVTIFAG 207
                                       5899*****************8888888.******************************975 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.7   1.4e-09   1.2e-06       1      76 [.       3      72 ..       3      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.4e-09
                                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE- CS
                   Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnl 76
                                      v+iiGaG++G+ v++l  + ++   e++v++r+ e +e++    +  ++  i  da+ ++ +L+a ++e+d++++ 
  gi|300712805|ref|YP_003738617.1|  3 VIIIGAGRTGRTVIDLATQDDH---EVVVIERDTEIAEEVS---ATYDCMVINADAASKDIMLEAGVEEADALIST 72
                                      79************99999765...7**********99998...5789999999*******************996 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2     3e-09   2.6e-06       3      72 ..       8      77 ..       7     115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3e-09
                                      TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCH.HHHHHTT-SEEEES---TC CS
                    NAD_binding_10  3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdved.laealkgadaVvsalgggg 72
                                       G++Gr +++ + ++ +hev+++ R++e ++e++a+  + v+ +d+ +++  l++ ++ ada +s++ +++
  gi|300712805|ref|YP_003738617.1|  8 AGRTGRTVIDLATQD-DHEVVVIERDTEIAEEVSATYDCMVINADAASKDImLEAGVEEADALISTTESDS 77
                                      7*********99999.7*****************99***********9986367779*********97654 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.2   6.7e-09   5.7e-06      15      92 ..       3      82 ..       1     128 [. 0.80

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 6.7e-09
                                      EEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCG...HHHHHHT-SEEEE-SSSSS-SB CS
                      Shikimate_DH 15 vlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealklee...lkellaeadvvisataseepil 90
                                      v++iGaG++++ v+  L+++  ++vvv+ R+ e a+e+   ++   i+a + ++   l++ ++ead +is t s ++ l
  gi|300712805|ref|YP_003738617.1|  3 VIIIGAGRTGRTVID-LATQDDHEVVVIERDTEIAEEVSATYDCMVINADAASKdimLEAGVEEADALISTTESDSVNL 80
                                      89*********9996.77788888******************8888888777655558899************987655 PP

                                      -H CS
                      Shikimate_DH 91 ek 92
                                        
  gi|300712805|ref|YP_003738617.1| 81 MV 82
                                      44 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.2   7.4e-08   6.4e-05       3      60 ..       4      54 ..       2     100 .. 0.83
   2 ?   -2.6   0.0       9.9   8.5e+03      24      34 ..     173     183 ..     154     187 .. 0.54

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 7.4e-08
                                      EEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHH CS
                     F420_oxidored  3 giiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaae 60
                                       iiGaG+ g++++  +++ +   he+vv+ +r+ e aee  +++   v+   n++aa+
  gi|300712805|ref|YP_003738617.1|  4 IIIGAGRTGRTVIDLATQDD---HEVVVI-ERDTEIAEEVSATYDCMVI---NADAAS 54
                                      589***********999999...****99.**************94444...455554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.9
                                       -GGCEEEEEES CS
                     F420_oxidored  24 qpheivvansr 34 
                                       +++ i+va  r
  gi|300712805|ref|YP_003738617.1| 173 PEETIIVAIVR 183
                                       34445555444 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.4   3.8e-07   0.00033       3      76 ..       4      77 ..       3      90 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.8e-07
                                      ESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT-HHHHHHH.HTT-SEEEE---GGS CS
                              NmrA  3 viGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv.kgdlddkeslvea.lkgvdvvfsvtgfys 76
                                      +i ++Gr G+ v++ +++++h+v ++ Rdt  e a+++++    +v ++d+ +k+++ ea ++++d+ +s+t++ s
  gi|300712805|ref|YP_003738617.1|  4 IIIGAGRTGRTVIDLATQDDHEVVVIERDT--EIAEEVSATYDCMViNADAASKDIMLEAgVEEADALISTTESDS 77
                                      45567*********************9997..678888877666655999999998766559**********9543 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.1   2.2e-06    0.0019       1      85 [.       1      83 [.       1      98 [. 0.70

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.2e-06
                                      EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEB.SSHHHHHHH-SEEEE-S-HH CS
                            DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavt.ddleevlekadvliDFTtpe 78
                                      + v+++Ga Gr G++v++++++ +d+e+v  ++r+++ +e+ +a   + + + + a +   le+ +e+ad li  T  +
  gi|300712805|ref|YP_003738617.1|  1 MYVIIIGA-GRTGRTVIDLATQ-DDHEVVV-IERDTEIAEEVSATYDCMVINADAASKdIMLEAGVEEADALISTTESD 76
                                      569****9.************9.7888775.466554445555544444445555555245677778899999999888 PP

                                      HHHHHHH CS
                            DapB_N 79 avlenlk 85
                                      +v  ++ 
  gi|300712805|ref|YP_003738617.1| 77 SVNLMVT 83
                                      8766555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3   4.1e-06    0.0035       2      71 ..       3      74 ..       2      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.1e-06
                                      EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH..HHHCCTTTTSS-HHHHCCCHHCEEEES CS
                           3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekiek..sleklvekgklkeeeveaalarisftt 71
                                      v +iGaG  G+ +  ++ + ++eVv++++++e++e++ ++       + +++k  + e+ ve+a a is+t+
  gi|300712805|ref|YP_003738617.1|  3 VIIIGAGRTGRTVIDLATQDDHEVVVIERDTEIAEEVSATYDCmvINADAASKDIMLEAGVEEADALISTTE 74
                                      779*********************************999988742333444555555777777777777654 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.4   5.2e-06    0.0044      31      99 ..       3      73 ..       1      80 [. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.2e-06
                                      EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEE.HCHHHHHHHHHHHH-SEEEE-- CS
                       AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvev.lksqeellaeavkeadvvigtv 99
                                      v++iG+G  G   i  a++ + +V+v++ +++ +e++++ +   ++++  +s+   l+  v+ead +i+t 
  gi|300712805|ref|YP_003738617.1|  3 VIIIGAGRTGRTVIDLATQDDHEVVVIERDTEIAEEVSAtYDCMVINAdAASKDIMLEAGVEEADALISTT 73
                                      89************************************9877777777344555577889********995 PP

>> PglD_N  PglD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   2.9e-05     0.025       2      34 ..       3      34 ..       2      64 .. 0.70
   2 ?    0.4   0.0       1.2     1e+03      37      65 ..     152     181 ..     143     183 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.9e-05
                            PglD_N  2 ivIiGaGGhgkvvadiieangeyeiigflDdnk 34
                                      ++IiGaG  g+ v+d++ + + +e++++  d++
  gi|300712805|ref|YP_003738617.1|  3 VIIIGAGRTGRTVIDLATQDD-HEVVVIERDTE 34
                                      79****************988.55555444433 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.2
                            PglD_N  37 evegypvlgk..aiellkslseeeyevviAI 65 
                                        ++g p+ g   ++++ ++l +ee+ +++AI
  gi|300712805|ref|YP_003738617.1| 152 VEDGAPIAGLslIDADREDLLPEET-IIVAI 181
                                       4566666664114566777779998.99999 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   7.9e-06    0.0067      10      94 ..       3     100 ..       1     107 [. 0.67

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.9e-06
                     NAD_binding_7  10 vlvvGgGevAarkvrklleagakvtvvapevkeele...elvk...laeeelekd......legadlviaatddrel 74 
                                       v+++G+G+ + + +    + + +v+v+  ++ e++e    +++   ++ + ++kd      +e+ad +i +t+ +++
  gi|300712805|ref|YP_003738617.1|   3 VIIIGAGRTGRTVIDLATQDDHEVVVIERDT-EIAEevsATYDcmvINADAASKDimleagVEEADALISTTESDSV 78 
                                       89*************************9994.33222333333221222222333444444**************** PP

                     NAD_binding_7  75 neriaeaakarri..lvnvadk 94 
                                       n  +    k++++  lv   ++
  gi|300712805|ref|YP_003738617.1|  79 NLMVTMFGKQYEVetLVSSIND 100
                                       9988776666544335555555 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.2   2.3e-05     0.019       1      52 [.       3      51 ..       3     134 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.3e-05
                                      EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE-EEEE--S CS
                            XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeadetavvvlth 52
                                      ++i+Gag  ++ +++la + + +v+v++ ++e+a++ ++     +++v+   
  gi|300712805|ref|YP_003738617.1|  3 VIIIGAGRTGRTVIDLATQDDHEVVVIERDTEIAEEVSAT---YDCMVINAD 51
                                      69*****************************987333222...222222222 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   5.2e-05     0.044       2      39 ..       2      38 ..       1     117 [. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.2e-05
                                      EEEEESTSHHHHHHHHHHHHHTTCEEEEEE-TS-HHHH CS
                           Gp_dh_N  2 kvainGfGRIGrlvlralleekelevvaindltdletl 39
                                       v i G GR Gr v+  + + ++ evv i++ t++++ 
  gi|300712805|ref|YP_003738617.1|  2 YVIIIGAGRTGRTVIDLATQ-DDHEVVVIERDTEIAEE 38
                                      6899***********99875.57788888875544433 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   4.6e-05     0.039      20     109 ..       3      90 ..       1     113 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-05
                                       EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEEEEETTT..HHHHHHTT---EEESSEEEES CS
                              Thi4  20 vvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsaivvrkpa..kelLdelgikyedegdyvvvk 94 
                                       v+i+GaG +G t    la++ d +v+++er   +   +      ++ +v++ +a  k+++ e g++  d     +  
  gi|300712805|ref|YP_003738617.1|   3 VIIIGAGRTGRTVID-LATQDDHEVVVIERDTEIAEEV---SATYDCMVINADAasKDIMLEAGVEEADALISTTES 75 
                                       9*********99865.66667**********9997665...568999999887644689999999999999888999 PP

                                       EHHHHHHHHHHHHHT CS
                              Thi4  95 daalftstllskvlq 109
                                       d++ ++ t+  k  +
  gi|300712805|ref|YP_003738617.1|  76 DSVNLMVTMFGKQYE 90 
                                       999999998877655 PP

>> HDPD  Bacteriophage lambda head decoration protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.27   2.3e+02      72      91 ..      19      38 ..      15      39 .. 0.84
   2 ?    9.9   0.0   0.00087      0.74      45     101 ..     102     195 ..      44     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.27
                              HDPD 72 ataadveavaiardaevnga 91
                                      at+ d e+v+i rd e++++
  gi|300712805|ref|YP_003738617.1| 19 ATQDDHEVVVIERDTEIAEE 38
                                      56669***********9975 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00087
                              HDPD  45 a........................................gklvpldpaatdGsqtAaaillypvdataadveava 81 
                                       a                                        g+   + ++ +dG+  +a+ +l ++d  +   e ++
  gi|300712805|ref|YP_003738617.1| 102 AhmelfedlgvnivesphqlngqylyravqhpaiqdfmpiaGEAEIFEATVEDGA-PIAGLSLIDADREDLLPEETI 177
                                       1566666666666666666666666666666666666666699999*********.99**********999888899 PP

                              HDPD  82 iardaevngaaLvwpasvtd 101
                                       i+  a+v++++L  p++ t+
  gi|300712805|ref|YP_003738617.1| 178 IV--AIVRDDELHIPKGETE 195
                                       98..9*********999775 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   0.00019      0.16       3      67 ..       3      70 ..       1      99 [. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00019
                                      EEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESS....HHHHHTCT..TESEEE CS
                      GFO_IDH_MocA  3 vaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysd....leelladp..eidavi 67
                                      v iiGaG+ g+  +  l  + +++evv ++++d+e ae+v++++++ + +      + +l+    e+da+i
  gi|300712805|ref|YP_003738617.1|  3 VIIIGAGRTGRTVI-DLATQ-DDHEVV-VIERDTEIAEEVSATYDCMVINAdaasKDIMLEAGveEADALI 70
                                      78************.77666.777777.89**********9999888444333333333333333455544 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   0.00011     0.091     145     250 ..       3     112 ..       1     121 [. 0.55

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                                       EEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.....EE CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xx RF
                       Pyr_redox_2 145 ivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge.....kl 216
                                       ++++G+G +G  +   +++  +ev+++e+ +++ +++      ++ +a      +++l++ v+e+d+  +     ++
  gi|300712805|ref|YP_003738617.1|   3 VIIIGAGRTGRTVIDLATQDDHEVVVIERDTEIAEEVSATYDCMVINADA-ASKDIMLEAGVEEADALISttesdSV 78 
                                       56777777777777777777777777777777773333222222211111.12245555666655554444444444 PP

                                       E.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT- CS
                                       x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                       Pyr_redox_2 217 e.vvledgeeidadlvvvavGvrpstelleeklgl 250
                                         +v+  g++++++++v ++   +  el+ e+lg+
  gi|300712805|ref|YP_003738617.1|  79 NlMVTMFGKQYEVETLVSSINDPAHMELF-EDLGV 112
                                       46677777777777777766444444444.55555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00016      0.14      39      75 ..       3      39 ..       1      76 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                                      EEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCH CS
                      2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydrskkkeeee 75
                                      v iiG+Gr G++v++++++ + +v++++r  +  ee+
  gi|300712805|ref|YP_003738617.1|  3 VIIIGAGRTGRTVIDLATQDDHEVVVIERDTEIAEEV 39
                                      77*************************9997744422 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00041      0.35       1      31 [.       5      35 ..       5      40 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00041
                                      EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
                     NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                                      I+GaG +G +   l+++++++v+++e+ + +
  gi|300712805|ref|YP_003738617.1|  5 IIGAGRTGRTVIDLATQDDHEVVVIERDTEI 35
                                      9*************************98765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00022      0.19       2      37 ..       3      40 ..       2      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
                                      EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGG CS
                               DAO  2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaS 37
                                      v+iiG+G +G ++   +++    V+++e++ +++++ S
  gi|300712805|ref|YP_003738617.1|  3 VIIIGAGRTGRTVIDLATQDDheVVVIERDTEIAEEVS 40
                                      89********9886666666579*******99997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1610.37
//
Query:       gi|300712806|ref|YP_003738618.1|  [L=524]
Description: cation transporter [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-70  237.0  13.5    4.7e-70  236.5  13.5    1.1  1  TrkH      Cation transport protein
  ------ inclusion threshold ------
      0.065   13.0   0.3        7.3    6.4   0.0    3.1  2  PHBC_N    Poly-beta-hydroxybutyrate polymerase N terminal
       0.47   10.5   0.0       0.47   10.5   0.0    3.6  4  OppC_N    N-terminal TM domain of oligopeptide transport perm


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.5  13.5   7.8e-74   4.7e-70      61     490 ..     110     518 ..      83     522 .. 0.92

  Alignments for each domain:
  == domain 1  score: 236.5 bits;  conditional E-value: 7.8e-74
                              TrkH  61 laf...ldalfeavsgltttglsvivveeslprsgltlraqlqqiGglgvvvlaylsl.ptlgrgsaflylseaqke 133
                                       l+f   l+a fe++sg tttgl++ v+e+s +   l++r+q+q++Gg+g++vl+ ++l    g+ + +ly+se    
  gi|300712806|ref|YP_003738618.1| 110 LNFqnpLHAFFESMSGYTTTGLTMSVHEPSVGHGFLWYRSQMQWVGGAGMIVLSLAILrQPHGIAGISLYQSEG--- 183
                                       4446679***************************************************66678**********9... PP

                              TrkH 134 elggkelrslselikilvvyyvgleilafvllvvl.iytakaysevvdstgvsplwwaffhsmSafnnlGfsltpnS 209
                                        +++k  +s++ ++++++++yvg+++l +v l v+ +++ ++y+        + +++a++h+m++ +++Gfs+++nS
  gi|300712806|ref|YP_003738618.1| 184 -RSEKLRPSIAGTARAIWKIYVGITALVAVYLAVAtFIVLPGYGIE------QTIFDALNHAMTGQSTGGFSTLDNS 253
                                       .999************************999977537888999888......4899********************* PP

                              TrkH 210 lasfnknivillvaiifiilGnigFpillrviiaikkkilrdlkqikeslsflldlprrcftLllasgfvwllllel 286
                                       +a +n+ + + +v i+ +i G+i+ p+ + + + ++++             f +d+++r+++ l+ +g+v+l+++  
  gi|300712806|ref|YP_003738618.1| 254 IAGYNS-YAMDIVHIPAMITGAISIPVYYAAASERDIRE------------FTRDPQVRALFGLFIVGVVGLTAFL- 316
                                       ******.***************************99999............88********99*****99999987. PP

                              TrkH 287 avlnvtdnilfilldegslvvksipkgsrvlkalFqsvstrta.GFsvvdlsnlhp.aikvllvlmmyigglpgSta 361
                                            + ++ +  +     +v+ ++  ++++++lFq +s+ t+ G+++  ++ +   a+++++  +m  gg++g t+
  gi|300712806|ref|YP_003738618.1| 317 -----ARWVGVPYNGDPLGYVGRVATSQAFREGLFQFISAQTTtGWQTSAIGDWNNgAVMFIVFGAMLLGGSAGATV 388
                                       .....5799999999999************************************87368888889************ PP

                              TrkH 362 ggIrrtnvyeefslgkyeieqekepk.avskksidgkhlerqllvdlws....lflvlliilileglklsdvqepdf 433
                                       ggI++++ y++ + + +e+++ + p+ a+   +i+ +  + +   d       ++  +li+l l+ ++l  v + +f
  gi|300712806|ref|YP_003738618.1| 389 GGIKILRGYIVARGISWEVSRVFLPDhAIDDLRIGQRIFKADEANDEIRaagtMAAAYLIVLALSLFVLLAVLPSEF 465
                                       **************************9**999999988887766666655666************************ PP

                              TrkH 434 sffdiLfevvSaygtvGLSlGaknaslsaqlttisklvlialmirGrlrglpvlldr 490
                                       +++d++fev+ a+gtvGLS+G    ++ + ++ i+++++i+ m++Grl+++pvl++ 
  gi|300712806|ref|YP_003738618.1| 466 TLADAIFEVATAQGTVGLSSG----ITGPGMPVIAEILFIIQMWMGRLEIIPVLVLI 518
                                       *********************....****************************9975 PP

>> PHBC_N  Poly-beta-hydroxybutyrate polymerase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0012       7.3       5      22 ..     230     248 ..     226     250 .. 0.86
   2 ?    3.2   0.0     0.013        78       6      22 ..     468     484 ..     463     485 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0012
                            PHBC_N   5 a.lDralhAalArlTgGlS 22 
                                       + +D + hA++++ TgG S
  gi|300712806|ref|YP_003738618.1| 230 TiFDALNHAMTGQSTGGFS 248
                                       448999***********98 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.013
                            PHBC_N   6 lDralhAalArlTgGlS 22 
                                        D +++ a+A+ T GlS
  gi|300712806|ref|YP_003738618.1| 468 ADAIFEVATAQGTVGLS 484
                                       7999************9 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.37   2.2e+03      15      39 ..      65      92 ..      61     115 .. 0.67
   2 ?   -4.1   0.6       2.7   1.6e+04      26      30 ..     213     217 ..     204     227 .. 0.49
   3 ?   10.5   0.0   7.9e-05      0.47      15      40 ..     299     325 ..     289     339 .. 0.89
   4 ?   -3.2   2.1       1.5   8.7e+03      22      33 ..     449     459 ..     442     472 .. 0.52

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.37
                            OppC_N 15 lAvvglvillllllia...ifaPliaPy 39
                                      + v++l +l++ ++ a   ++a +i+P 
  gi|300712806|ref|YP_003738618.1| 65 MIVAALGWLATAAFGAipfVIAAYITPS 92
                                      5567777777777776555667788775 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.7
                            OppC_N  26 lllia 30 
                                        l++a
  gi|300712806|ref|YP_003738618.1| 213 YLAVA 217
                                       22222 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 7.9e-05
                            OppC_N  15 lAvvglvilllllliaifaPli.aPyd 40 
                                       +A++gl+i+ ++ l a++a ++ +Py+
  gi|300712806|ref|YP_003738618.1| 299 RALFGLFIVGVVGLTAFLARWVgVPYN 325
                                       8********************977875 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.5
                            OppC_N  22 illlllliaifa 33 
                                       +l+ l l++++a
  gi|300712806|ref|YP_003738618.1| 449 VLA-LSLFVLLA 459
                                       333.22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3485.68
//
Query:       gi|300712807|ref|YP_003738619.1|  [L=228]
Description: TrkA-N domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-26   91.2   2.2    1.1e-25   90.2   2.2    1.5  1  TrkA_N           TrkA-N domain
    2.3e-14   53.0   0.9    1.1e-12   47.6   0.1    2.4  2  TrkA_C           TrkA-C domain
      1e-06   29.3   0.5    3.7e-06   27.4   0.4    2.0  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    5.7e-05   23.4   0.5    0.00012   22.3   0.5    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00017   22.1   0.7    0.00036   21.0   0.7    1.6  1  ATPgrasp_N       ATP-grasp N-terminal domain
    0.00022   21.6   0.2    0.00041   20.8   0.2    1.4  1  NAD_binding_7    Putative NAD(P)-binding
    0.00029   20.9   0.1    0.00061   19.9   0.1    1.6  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00093   18.8   1.0      0.022   14.4   0.2    2.4  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
     0.0011   19.5   0.2     0.0084   16.7   0.1    2.3  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
     0.0029   18.1   0.1     0.0048   17.4   0.1    1.4  1  XdhC_C           XdhC Rossmann domain
     0.0051   17.2   0.2     0.0077   16.6   0.2    1.3  1  Peripla_BP_3     Periplasmic binding protein-like domain
      0.006   16.8   0.0     0.0088   16.2   0.0    1.4  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
     0.0067   16.3   1.5      0.019   14.9   1.0    1.8  2  NAD_binding_10   NAD(P)H-binding
     0.0067   17.2   0.3      0.024   15.5   0.3    1.9  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
     0.0071   15.6   0.1       0.21   10.8   0.0    2.2  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
     0.0073   16.3   0.1       0.02   14.9   0.1    1.7  1  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0082   15.8   0.0      0.022   14.5   0.0    1.8  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
  ------ inclusion threshold ------
      0.015   15.1   0.1      0.024   14.5   0.1    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.018   14.3   0.8      0.031   13.6   0.8    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      0.027   15.1   0.5      0.093   13.4   0.2    2.0  2  PglD_N           PglD N-terminal domain
       0.03   13.7   0.0      0.047   13.0   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.041   13.5   0.1      0.067   12.8   0.1    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.072   12.6   0.2        0.1   12.1   0.2    1.3  1  NmrA             NmrA-like family
       0.15   11.4   1.5        4.2    6.6   0.1    2.1  2  ThiF             ThiF family


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   2.2   1.4e-28   1.1e-25       1     116 []       3     118 ..       3     118 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.4e-28
                                       EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTT.SEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHH CS
                            TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeg.levvvgdatdeevLeeagiekadaviaatgddea 75 
                                       iii+G+G++G+ l++  ++ g+ +vvvi++d++r++ ++ e  + v+++dat +++L +ag+e+ad++i +t++d++
  gi|300712807|ref|YP_003738619.1|   3 IIIVGAGDIGTPLIDIATRsGN-EVVVIERDKQRADAVASEYdCLVLNADATLKDTLNDAGAERADGIISTTDQDAT 78 
                                       8******************555.7***************999999******************************** PP

                                       HHHHHHHHHHHTSSSEEEEEESSGGGHHHHHHHTTSEEEEH CS
                            TrkA_N  76 nilavllakelnpkkkiiaraqdpehaellkklgadvvisp 116
                                       n++++lla+el   + i++ +++peh +l++++g++++ +p
  gi|300712807|ref|YP_003738619.1|  79 NVMVALLAQELEI-PAIVSVVHNPEHMNLFRQIGVNTIENP 118
                                       *********9666.88********************99776 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.067        50       6      36 ..       6      33 ..       1      41 [. 0.73
   2 !   47.6   0.1   1.5e-15   1.1e-12       1      61 [.     147     212 ..     147     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.067
                                      EE--GGGTTSBHHHHTHHHH.S-EEEEEE-T- CS
                            TrkA_C  6 vpagsplvGktlkelnlrar.gvlvvairRgg 36
                                      v+ag   +G++l +  + +r g  vv i R++
  gi|300712807|ref|YP_003738619.1|  6 VGAG--DIGTPLID--IATRsGNEVVVIERDK 33
                                      4444..49******..55555*******9994 PP

  == domain 2  score: 47.6 bits;  conditional E-value: 1.5e-15
                                       CEEEEEE--GGGTTSBHHHHT....HHHHS-EEEEEE-T..-EEES--TT-B--TT-EEEEEEEHHH CS
                            TrkA_C   1 lvevtvpagsplvGktlkeln....lrargvlvvairRg..geliipsgdtvLeeGDvllvvgspsd 61 
                                       ++e+tv++++p++Gktl e++    l + ++l+va+ R+  ++++ p+g+t+++++D+l+v++ + +
  gi|300712807|ref|YP_003738619.1| 147 VFEITVTEDAPIAGKTLTEAGeeglLSD-DILIVAVGREseEKPLTPRGNTRIKANDLLTVYSGSGA 212
                                       79*****************888887777.*******9999*********************987765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.4     5e-09   3.7e-06       2      95 ..       3      98 ..       2     100 .. 0.77
   2 ?   -1.2   0.0       4.3   3.2e+03      48      72 ..     161     184 ..     149     200 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 5e-09
                                      EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.......-EEECECHHHHHHH-SEEEE-S-HHH CS
                     F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.......vkvtavdneeaaeeadvvvlavkped 73
                                      i i+GaG++g  l+  ++++g   +e+vv+ +r++++a++ a+e+        ++++ + n   ae+ad + ++   +d
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSG---NEVVVI-ERDKQRADAVASEYDclvlnadATLKDTLNDAGAERADGI-ISTTDQD 76
                                      5577*****************...****99.***************9998876555553344445566665.4556677 PP

                                      HHHHHHHCGHHHHTTSEEEEES CS
                     F420_oxidored 74 veevlselakdalkgklvisvl 95
                                      +++v+ +l +++l+   ++sv+
  gi|300712807|ref|YP_003738619.1| 77 ATNVMVALLAQELEIPAIVSVV 98
                                      7777777768888888888875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.3
                                       -EEECECHHHHHHH-SEEEE-S-HH CS
                     F420_oxidored  48 vkvtavdneeaaeeadvvvlavkpe 72 
                                        ++t+ + ee + + d++++av  e
  gi|300712807|ref|YP_003738619.1| 161 KTLTE-AGEEGLLSDDILIVAVGRE 184
                                       44555.4444444577888887655 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.5   1.7e-07   0.00012       1      45 [.       3      63 ..       3     110 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.7e-07
                                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...................T CS
                   Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka...................l 45
                                      ++i+GaG +G ++++   r+++   e++v++r+k++++a+a++                    +
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSGN---EVVVIERDKQRADAVASEYdclvlnadatlkdtlndagA 63
                                      89******************98...5**************976666555555555555555432 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.7   4.8e-07   0.00036       4      81 ..      19      92 ..      16      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4.8e-07
                                      HHHTT-EEEEEEETTS----S-TT.EEEEEEE-TTT-HHHHHHHHHHHHHHS--SEEE---G..GGHHHHHHHHHHTT- CS
                        ATPgrasp_N  4 AkaLGikvvlvdeedewapeelaelvekfipldlaqdpdaaleavralsrerpvdGivtftd..lavplvArlaeaLgL 80
                                      A + G +vv+++++++ a + + e   ++++l+ ++    + ++++  + +++ dGi+++td  ++ ++vA la++L++
  gi|300712807|ref|YP_003738619.1| 19 ATRSGNEVVVIERDKQRADAVASE--YDCLVLNADA---TLKDTLND-AGAERADGIISTTDqdATNVMVALLAQELEI 91
                                      788899********9998888877..5777776664...44455555.455789***99975227899*********** PP

                                      S CS
                        ATPgrasp_N 81 P 81
                                      P
  gi|300712807|ref|YP_003738619.1| 92 P 92
                                      9 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   5.4e-07   0.00041      10      98 ..       3     104 ..       1     107 [. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.4e-07
                     NAD_binding_7  10 vlvvGgGevAarkvrklleagakvtvvapevkeele.......elvkla.eeelekd.....legadlviaatddre 73 
                                       +++vG+G++++  +    ++g +v+v+  +   +         + + l+ + +l++       e+ad +i +td+++
  gi|300712807|ref|YP_003738619.1|   3 IIIVGAGDIGTPLIDIATRSGNEVVVIERDK--QRAdavaseyDCLVLNaDATLKDTlndagAERADGIISTTDQDA 77 
                                       68****************************4..22213443332222221222222244445888************ PP

                     NAD_binding_7  74 lneriaeaakarri..lvnvadkpelc 98 
                                        n  +a +a++ +i   v v+ +pe+ 
  gi|300712807|ref|YP_003738619.1|  78 TNVMVALLAQELEIpaIVSVVHNPEHM 104
                                       ***********9994457778888776 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   8.2e-07   0.00061      15      85 ..       3      75 ..       1      92 [. 0.73
   2 ?   -2.5   0.0       6.4   4.8e+03      71      83 ..     169     181 ..     120     187 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 8.2e-07
                                      EEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E..T-EEEEGCGHHHH.HHT-SEEEE-SSS CS
                      Shikimate_DH 15 vlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkge..eiealkleelkel.laeadvvisatas 85
                                      ++++GaG +++ ++    ++g + vvv+ R+ +ra+++a+e++    ++ a+  + l+++  ++ad +is t  
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSGNE-VVVIERDKQRADAVASEYDCLvlNADATLKDTLNDAgAERADGIISTTDQ 75
                                      79************987777766.*****************954411333333344444325667888877765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.4
                                       HHHHT-SEEEE-S CS
                      Shikimate_DH  71 ellaeadvvisat 83 
                                       e l + d++i+a+
  gi|300712807|ref|YP_003738619.1| 169 EGLLSDDILIVAV 181
                                       3344556666655 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   2.9e-05     0.022       1      41 [.       1      41 [.       1      62 [. 0.91
   2 ?    2.6   0.1      0.11        85     121     157 ..      71     105 ..      68     132 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-05
                                      SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCT CS
                    UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvDideekvdklns 41
                                      m i ++G+G +G +   +  + g+ev+++  d+++ d++ s
  gi|300712807|ref|YP_003738619.1|  1 MYIIIVGAGDIGTPLIDIATRSGNEVVVIERDKQRADAVAS 41
                                      6799******************************9998876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.11
                                       S---TTHHHHCHHHHHHHHCSS-TTCEEEEE------ CS
                    UDPG_MGDP_dh_N 121 STvpvgtaeelvkkileeaskkkgvdfdvvsnPEflr 157
                                       ST+   +++ +v  +l+++ +   + ++vv+nPE ++
  gi|300712807|ref|YP_003738619.1|  71 STTDQDATNVMV-ALLAQELEI-PAIVSVVHNPEHMN 105
                                       666666776444.444444443.4789*******875 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.1e-05    0.0084       2      33 ..       3      34 ..       2      43 .. 0.92
   2 ?    0.2   0.0       1.5   1.1e+03      29      53 ..      64      88 ..      63     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.1e-05
                                      EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
                         Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                                      +++vG+G+ig  l  ++++ g++V v+er ++
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSGNEVVVIERDKQ 34
                                      79**************************9876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.5
                                      ESSSSSSTTSSHHHHHHHHHHHHHT CS
                         Pyr_redox 29 ersdkllrllDeeaskilqeklekn 53
                                      er+d + +  D++a +++   l ++
  gi|300712807|ref|YP_003738619.1| 64 ERADGIISTTDQDATNVMVALLAQE 88
                                      6788888888999888888777554 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   6.5e-06    0.0048       2      45 ..       4      67 ..       3     114 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.5e-06
                                      EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG.................-GGG-TT-SE...........- CS
                            XdhC_C  2 vifGaghvaqalarlaaalgfrvtvvdpreefa.................tkerfpeade...........t 45
                                      +i+Gag+++ +l+++a + g +v+v++ +++ a                          +           +
  gi|300712807|ref|YP_003738619.1|  4 IIVGAGDIGTPLIDIATRSGNEVVVIERDKQRAdavaseydclvlnadatL--------KdtlndagaeraD 67
                                      8**************************999866555555555554444431........0333333444442 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2     1e-05    0.0077      49     107 ..      28      98 ..      18     132 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1e-05
                                       -S-SS-SSHHHHH...............HHH.HHCC.-SEEEEESSCCHHHHHHHHHCCTT--TTTTEEEE CS
                      Peripla_BP_3  49 vaaddpaaaaaaraal.........ll.qal.klaa.lPtAviaasDelAlgvlqalreaglrvPedlsvi 107
                                       v ++d++ a+a+++            l + l +++a +++++i ++D+ A  v+ al +++l++P  +sv+
  gi|300712807|ref|YP_003738619.1|  28 VIERDKQRADAVASEYdclvlnadaTLkDTLnDAGAeRADGIISTTDQDATNVMVALLAQELEIPAIVSVV 98 
                                       444445444444444445444443322444564444699******************************98 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-05    0.0088       3      79 ..       4      88 ..       2     123 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
                                      EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT....EEE-SSHHHHHHHC.....SEEEE-SSSHHHHHHH CS
                     NAD_binding_2  3 gfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg....akaaesieelvasl.....dvvitmvkagkavdev 72
                                       ++G G +G++++   +++g +v+v++r+k++++++++e     ++a +++++ ++++     d +i   ++++a++ +
  gi|300712807|ref|YP_003738619.1|  4 IIVGAGDIGTPLIDIATRSGNEVVVIERDKQRADAVASEYdclvLNADATLKDTLNDAgaeraDGIIS-TTDQDATNVM 81
                                      589*********************************99988888555555555555544443444443.3444444444 PP

                                      HHSHCCC CS
                     NAD_binding_2 73 iegllea 79
                                      +  l+++
  gi|300712807|ref|YP_003738619.1| 82 VALLAQE 88
                                      4445555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.0   2.6e-05     0.019       3      73 ..       8      78 ..       7      98 .. 0.86
   2 ?    0.1   0.1      0.84   6.3e+02      13      44 ..      83     115 ..      75     188 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.6e-05
                                      TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHH.TT-SEEEES---TCC CS
                    NAD_binding_10  3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaeal.kgadaVvsalggggk 73
                                       G +G  l++ + ++g  ev+++ R++++++++++e  + v+ +d+t +++l +a  + ad ++s++ ++++
  gi|300712807|ref|YP_003738619.1|  8 AGDIGTPLIDIATRSG-NEVVVIERDKQRADAVASEYDCLVLNADATLKDTLNDAGaERADGIISTTDQDAT 78
                                      699************5.8****************999****************9972578999999976655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.84
                                       HHHHC-..T-EEEEEETTHHHCHHHHCTTTCEEE CS
                    NAD_binding_10  13 ellarg..ghevtalvRnpeklaeleaeeglevv 44 
                                        lla++    +++ +v npe+++ ++ + g++++
  gi|300712807|ref|YP_003738619.1|  83 ALLAQEleIPAIVSVVHNPEHMNLFR-QIGVNTI 115
                                       56666432223445667788877554.4555544 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   3.2e-05     0.024       3      80 ..       3     108 ..       1     116 [. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.2e-05
                                       EEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESS.......................... CS
                      GFO_IDH_MocA   3 vaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysd.......................... 53 
                                       + i+GaG ig++ +  +  + ++ evv ++++d++ra+ava ++++ + +                           
  gi|300712807|ref|YP_003738619.1|   3 IIIVGAGDIGTPLI-DIATR-SGNEVV-VIERDKQRADAVASEYDCLVLNAdatlkdtlndagaeradgiisttdqd 76 
                                       78************.66666.566666.8***********9999998555556666666667777766676666666 PP

                                       ....HHHHHTCT.TESEEEE-S-GGGHHHHHH CS
                      GFO_IDH_MocA  54 ....leelladp.eidavivatpngtheelak 80 
                                           + +lla++ ei a++ +++n +h++l +
  gi|300712807|ref|YP_003738619.1|  77 atnvMVALLAQElEIPAIVSVVHNPEHMNLFR 108
                                       66665555555556666666666666666655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00028      0.21     145     176 ..       3      34 ..       2      80 .. 0.91
   2 ?    3.0   0.0     0.064        48     210     244 ..     151     190 ..     105     208 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00028
                                       EEEES-SHHHHHHHHHHHHHT-EEEEEESSSS CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                       Pyr_redox_2 145 ivvvGgGyiGvElAaalaklgkevtlveardr 176
                                       i++vG+G iG+ l   +++ g ev+++e+ ++
  gi|300712807|ref|YP_003738619.1|   3 IIIVGAGDIGTPLIDIATRSGNEVVVIERDKQ 34 
                                       78*************************99665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.064
                                       EETTE...EEEEEETTSCE..EEESEEEE-S-EEES-HHC CS
                                       xxxxx...xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
                       Pyr_redox_2 210 dgnge...klevvledgee..idadlvvvavGvrpstell 244
                                       +  ++     ++ +e gee  +  d ++vavG++ + + l
  gi|300712807|ref|YP_003738619.1| 151 TVTEDapiAGKTLTEAGEEglLSDDILIVAVGRESEEKPL 190
                                       3333333322233444444447778888888887766554 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.7e-05      0.02       2     102 ..      11     109 ..      11     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-05
                                       HHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHH CS
                        ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakk.lGadevinykeadlverikeltggegvdvvfecvGsgatleaalk 77 
                                       +G+ ++ +A  +G ev+++ +++++++ +++ +    v+n++  +l++ + ++   e +d ++ ++  +++ +  ++
  gi|300712807|ref|YP_003738619.1|  11 IGTPLIDIATRSGNEVVVIERDKQRADAVASeYD-CLVLNADA-TLKDTLNDAG-AERADGIISTTD-QDATNVMVA 83 
                                       78889********************988877466.45667744.9*******99.89********99.999999999 PP

                                       CEEEEEEE.EECSCTSSEEEEEHHHH CS
                        ADH_zinc_N  78 llkpgGrl.vvvGggkgeeefdlrnl 102
                                       ll+    + ++v +++++e+++l+++
  gi|300712807|ref|YP_003738619.1|  84 LLAQELEIpAIVSVVHNPEHMNLFRQ 109
                                       99887666255555777777777665 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     3e-05     0.022      20      55 ..      62      99 ..      43     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-05
                                      TS-GEEEEE..ES--TTHHHHHHHHHHTT--EEE--SS CS
                     PEP-utilizers 20 gldkaaGiv..terGGmtSHaAivArelgiPaVvgvge 55
                                      g ++a Gi+  t++ + +  +A++A+el+iPa+v v +
  gi|300712807|ref|YP_003738619.1| 62 GAERADGIIstTDQDATNVMVALLAQELEIPAIVSVVH 99
                                      44599999944568899999**************9865 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   3.2e-05     0.024       2      70 ..       3      73 ..       2      94 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.2e-05
                                      EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH.HHHC.CTTTTSS-HHHHCCCHHCEEEE CS
                           3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekiek.slek.lvekgklkeeeveaalarisft 70
                                      + ++GaG +G+ +  ++ ++g eVv+++++++++++++++     l+  +  k  l+++ +e+a   is+t
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSGNEVVVIERDKQRADAVASEYDClVLNAdATLKDTLNDAGAERADGIISTT 73
                                      569****************************9999988887764233202333444444444444444443 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   4.2e-05     0.031      31      98 ..       3      72 ..       2      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.2e-05
                                      EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHHHH.HHH-SEEEE- CS
                       AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvevlksqeellaea.vkeadvvigt 98
                                      ++++G+G  G+  i +a++ g +V+v++ +++r+  + s +   ++++ +  +++l++a +++ad +i+t
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSGNEVVVIERDKQRADAVASeYDCLVLNADATLKDTLNDAgAERADGIIST 72
                                      689**********************************998777777776666666655437778888887 PP

>> PglD_N  PglD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   0.00012     0.093       2      47 ..       3      51 ..       2      64 .. 0.63
   2 ?   -1.6   0.0       5.9   4.4e+03      40      66 ..     155     182 ..     146     185 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00012
                            PglD_N  2 ivIiGaGGhgkvvadiieangeyeiigflDdn.kkteveg...ypvlgka 47
                                      i+I+GaG  g   +di+ ++g  e++++  d+  +++v     + vl  +
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSG-NEVVVIERDKqRADAVASeydCLVLNAD 51
                                      8********************.3444433333033444322224555544 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.9
                            PglD_N  40 gypvlgkaiel..lkslseeeyevviAIG 66 
                                       + p+ gk++++  ++ l  +++ +++A+G
  gi|300712807|ref|YP_003738619.1| 155 DAPIAGKTLTEagEEGLLSDDI-LIVAVG 182
                                       5667776654422344555666.788998 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.3e-05     0.047      39      79 ..       3      44 ..       1      58 [. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.3e-05
                                      EEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH.CHHHHT CS
                      2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydrskkkee.eeeelg 79
                                      + i+G+G+IG+ ++++++  g +v++++r k++ +  ++e+ 
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSGNEVVVIERDKQRADaVASEYD 44
                                      569***************************997763333333 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     9e-05     0.067       1      76 [.       3      73 ..       3     111 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9e-05
                                      EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-S CS
                              ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtv 76
                                      i i+GaG iG+ l    ++ g++v++i r++ r++a+ ++  +l  +  + +l+++ + + +     e +d +i t+
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSGNEVVVIERDKqRADAVASEYDCLVLNA-DATLKDTLNDAGA-----ERADGIISTT 73
                                      89*********99887788****************9888777776666.4444444443333.....4444444444 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00014       0.1       3      75 ..       4      76 ..       3     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                                      ESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT-HHHHHHH.HTT-SEEEE---GG CS
                              NmrA  3 viGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv.kgdlddkeslvea.lkgvdvvfsvtgfy 75
                                      +i ++G +G  ++++++++g++v ++ Rd +  +a++++++   lv ++d+  k+ l+ a  + +d+++s+t   
  gi|300712807|ref|YP_003738619.1|  4 IIVGAGDIGTPLIDIATRSGNEVVVIERDKQ--RADAVASEYDCLVlNADATLKDTLNDAgAERADGIISTTDQD 76
                                      55667********************999975..566666666666669999999999888567899999998833 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.032        24      21      41 ..       3      23 ..       1      33 [. 0.82
   2 ?    6.6   0.1    0.0056       4.2      81     140 ..      36      96 ..      30     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.032
                                      EEEE--SHHHHHHHHHHHHHT CS
                                      xxxxxxxxxxxxxxxxxxxxx RF
                              ThiF 21 vllvGaGglGsellknLalsG 41
                                      + +vGaG +G +l+    +sG
  gi|300712807|ref|YP_003738619.1|  3 IIIVGAGDIGTPLIDIATRSG 23
                                      89**********998888887 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0056
                                       HHHT-TTSEEEEEES-CCG.CCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEE CS
                                       xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              ThiF  81 lqeinpdveveavteritd.etvleellesvDlVvdalDniearrlvnracvkkgipliea 140
                                       + +++++ +   ++++ t  +t+++   e++D ++ ++D+ ++ ++v+ ++++ +ip i +
  gi|300712807|ref|YP_003738619.1|  36 ADAVASEYDCLVLNADATLkDTLNDAGAERADGIISTTDQDATNVMVALLAQELEIPAIVS 96 
                                       5555555556666666777555899999*****************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1598.10
//
Query:       gi|300712808|ref|YP_003738620.1|  [L=147]
Description: UspA domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-12   47.4   0.2    3.2e-12   47.2   0.2    1.1  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.2   1.8e-16   3.2e-12       2     140 ..       6     139 ..       5     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 1.8e-16
                                       -SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
                               Usp   2 ykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeag 78 
                                       ++ ++V+v + +++++ +   +   + +++++i++hvi+    ++ +++ e+ e+ +++  +a ++      + + g
  gi|300712808|ref|YP_003738620.1|   6 FRQVVVPVANPDDAEATAATLVPYVEGTDSTVIAVHVIEKAGGAPDKASVEQREQWAQDMFAAISD-----GLSDTG 77 
                                       689***********************************9887666666666666666666666555.....467999 PP

                                       TCEEEEEEEESSHHHHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEE CS
                               Usp  79 gvkvevvveegdpaeeilevaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvV 140
                                       ++ ++ ++ + d a + +++a e+da+ i    rg s+ ++ll G+v++++++++++p lv 
  gi|300712808|ref|YP_003738620.1|  78 IALETKILYGTDIASTVIDAAHELDASAIAFTPRGGSRWRKLLTGDVTHNLVNKTDVPILVL 139
                                       99999999999*************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1041.42
//
Query:       gi|300712809|ref|YP_003738621.1|  [L=106]
Description: hypothetical protein HacjB3_17438 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.29s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 766.60
//
Query:       gi|300712810|ref|YP_003738622.1|  [L=247]
Description: putative transcriptional regulator, AsnC family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-10   40.1   0.1    5.3e-10   39.0   0.1    1.7  1  TrkA_C          TrkA-C domain
    1.8e-09   37.0   0.9    3.6e-09   36.1   0.9    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
    1.1e-07   31.5   0.5      2e-07   30.7   0.5    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    7.2e-06   25.8   0.1    1.5e-05   24.8   0.1    1.5  1  HTH_11          HTH domain
    3.6e-05   23.5   0.0    7.7e-05   22.5   0.0    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
    0.00019   21.1   0.2    0.00053   19.7   0.1    1.8  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    0.00041   20.3   0.0     0.0012   18.9   0.0    1.8  1  HTH_20          Helix-turn-helix domain
    0.00062   19.6   0.0     0.0021   17.9   0.0    1.9  1  MarR_2          MarR family
     0.0031   17.4   0.6      0.073   13.1   0.1    3.1  4  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0045   17.2   0.0      0.011   15.9   0.0    1.7  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0054   16.6   0.0      0.011   15.7   0.0    1.4  1  MarR            MarR family
     0.0089   15.7   0.1      0.036   13.7   0.1    2.0  1  GntR            Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.034   14.5   0.0    1.7  1  Rrf2            Transcriptional regulator
      0.014   15.2   0.0      0.036   13.9   0.0    1.6  1  HTH_IclR        IclR helix-turn-helix domain
      0.025   14.4   0.0       0.06   13.2   0.0    1.6  1  HTH_23          Homeodomain-like domain
      0.027   14.9   1.1      0.074   13.4   0.1    2.1  2  FaeA            FaeA-like protein
       0.04   13.9   0.0      0.095   12.7   0.0    1.7  1  HTH_36          Helix-turn-helix domain
      0.053   13.6   0.0       0.21   11.8   0.0    1.9  1  HTH_28          Helix-turn-helix domain
      0.058   13.0   0.1       0.09   12.4   0.1    1.2  1  DDRGK           DDRGK domain
        0.1   12.6   0.0       0.24   11.4   0.0    1.6  1  HTH_29          Winged helix-turn helix
       0.11   11.9   0.1       0.18   11.2   0.1    1.4  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.16   11.5   0.7       0.31   10.6   0.1    1.8  2  HTH_CodY        CodY helix-turn-helix domain
       0.18   11.9   0.0       0.33   11.0   0.0    1.5  1  HTH_Mga         M protein trans-acting positive regulator (MG


Domain annotation for each model (and alignments):
>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   6.7e-13   5.3e-10       1      60 [.     173     235 ..     173     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 6.7e-13
                                       CEEEEEE--GGGTTSBHHHHTHHHH.....S-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHH CS
                            TrkA_C   1 lvevtvpagsplvGktlkelnlrar.....gvlvvairRggeliipsgdtvLeeGDvllvvgsps 60 
                                       +ve+tv++g+ ++G t+ +    ++       lvv+i R+g+++ p g+t++++GDv+ ++++  
  gi|300712810|ref|YP_003738622.1| 173 VVEFTVSEGAEVAGLTIEQ--AVEEglladEMLVVGIEREGDVLTPKGETTIQKGDVISLFSKTG 235
                                       79*****************..333335666****************************9998876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.9   4.6e-12   3.6e-09       2      48 .]       6      53 ..       5      53 .. 0.97

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 4.6e-12
                            HTH_24  2 detdrkILelLqknpr.isqreLAerlglSpstvnrrlkrLeeeGlIk 48
                                      de+d++IL +L  ++r +s +++A++  ++ +t++ r+++LeeeG+++
  gi|300712810|ref|YP_003738622.1|  6 DEIDKRILYYLALDARnTSTSDIADEMEVTAATIRNRINQLEEEGILR 53
                                      9********************************************985 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.5   2.6e-10     2e-07       1      42 []       5      47 ..       5      47 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 2.6e-10
                     HTH_AsnC-type  1 LDeiDrkILeaLqedaR.isyaeLAervGlSestvlrRvrrLe 42
                                      +DeiD++IL  L  daR +s +++A++  ++++t+++R+++Le
  gi|300712810|ref|YP_003738622.1|  5 IDEIDKRILYYLALDARnTSTSDIADEMEVTAATIRNRINQLE 47
                                      6**************88689**********************8 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   1.9e-08   1.5e-05       5      44 ..      12      51 ..      10      63 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.9e-08
                            HTH_11  5 ilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                                      il  L     + s +++A+e++v+ +t+r++I +Lee g+
  gi|300712810|ref|YP_003738622.1| 12 ILYYLALDARNTSTSDIADEMEVTAATIRNRINQLEEEGI 51
                                      666664444459**************************93 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   9.9e-08   7.7e-05       6      45 ..      11      52 ..       6      53 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 9.9e-08
                                      HHHHHHTT..SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                             HTH_5  6 kILklLae..gelcvcelaeelglsqstvShHLkkLreaGLV 45
                                      +IL++La   ++++ +++a+e++++ +t++   ++L+e+G++
  gi|300712810|ref|YP_003738622.1| 11 RILYYLALdaRNTSTSDIADEMEVTAATIRNRINQLEEEGIL 52
                                      8*******999*****************************97 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   6.7e-07   0.00053       5      45 ..      12      53 ..       9      55 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.7e-07
                          HTH_DeoR  5 ilellk.qqgklsveelvellgvSeaTiRRDLneLeeqgllt 45
                                      il +l+ + +  s+ +++++ +v+ aTiR+ +n+Lee+g+l+
  gi|300712810|ref|YP_003738622.1| 12 ILYYLAlDARNTSTSDIADEMEVTAATIRNRINQLEEEGILR 53
                                      5555542567889**************************964 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-06    0.0012      19      56 ..      16      54 ..       6      55 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.5e-06
                                      H.STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
                            HTH_20 19 L.araegltaselaerldlskntlsyHLrvLeeagLvev 56
                                      L  +a+  + s++a++++++ +t+++++++Lee g++++
  gi|300712810|ref|YP_003738622.1| 16 LaLDARNTSTSDIADEMEVTAATIRNRINQLEEEGILRG 54
                                      44488899****************************985 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.7e-06    0.0021       9      52 ..      11      53 ..       8      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.7e-06
                                      HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
                            MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                                      r+L++L+   ++  + +++a+++ ++ +++ ++++ L++ G ++
  gi|300712810|ref|YP_003738622.1| 11 RILYYLALDARN-TSTSDIADEMEVTAATIRNRINQLEEEGILR 53
                                      789999888865.7**************************9875 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   9.3e-05     0.073      21      53 ..      22      54 ..      10      70 .. 0.80
   2 ?   -1.4   0.0       2.9   2.3e+03      49      67 ..      66      86 ..      63      87 .. 0.69
   3 ?    0.1   0.0         1   7.9e+02      31      51 ..     112     133 ..     110     140 .. 0.80
   4 ?   -1.0   0.0       2.4   1.8e+03      20      37 ..     174     191 ..     163     194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.3e-05
                                      EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
                         HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisr 53
                                      + +  ++A+ + +t  t+   +++L++eg+++ 
  gi|300712810|ref|YP_003738622.1| 22 NTSTSDIADEMEVTAATIRNRINQLEEEGILRG 54
                                      56889*************************993 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.9
                                      TSEE..ETEEEEES-HHHHHH CS
                         HTH_Crp_2 49 glis..rgrririldleaLra 67
                                      gl++   + +  i+d+ +L++
  gi|300712810|ref|YP_003738622.1| 66 GLVTyqLRCTASIPDRSRLAQ 86
                                      66774224238899**99986 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1
                                       TTSSHHHHHHHHHHHHHTTS.E CS
                         HTH_Crp_2  31 lGltretvsrilseLkregl.i 51 
                                       +G+   +++++ +eL + gl i
  gi|300712810|ref|YP_003738622.1| 112 VGSDTAHINQAAGELADLGLeI 133
                                       6888899**********99844 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 2.4
                                       EEHHHHHHHHHTTSSHHH CS
                         HTH_Crp_2  20 lpltqeelAsmlGltret 37 
                                       + +t  e A+  Glt e+
  gi|300712810|ref|YP_003738622.1| 174 VEFTVSEGAEVAGLTIEQ 191
                                       678888999*****9997 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-05     0.011      19      52 ..      19      52 ..      11      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
                                      HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                    Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyv 52
                                      +    +t+d+a +++v ++++   ++ Le++G +
  gi|300712810|ref|YP_003738622.1| 19 DARNTSTSDIADEMEVTAATIRNRINQLEEEGIL 52
                                      556679************************9854 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-05     0.011      16      48 ..      21      53 ..      12      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.4e-05
                                      TTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                              MarR 16 gplsvseLakklgvskstvtrvldrLekkGlie 48
                                       + s s++a+ ++v+ +t+ + + +Le++G ++
  gi|300712810|ref|YP_003738622.1| 21 RNTSTSDIADEMEVTAATIRNRINQLEEEGILR 53
                                      678999************************875 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   4.6e-05     0.036      28      54 ..      26      52 ..      24      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.6e-05
                                      HHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                              GntR 28 reLaaefgVsrttvReALrrLeaeglv 54
                                      +++a+e++V++ t+R  +++Le+eg++
  gi|300712810|ref|YP_003738622.1| 26 SDIADEMEVTAATIRNRINQLEEEGIL 52
                                      679**********************98 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.3e-05     0.034      12      56 ..      11      53 ..       7      55 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.3e-05
                                      HHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                              Rrf2 12 hallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvk 56
                                      ++l+yLa+ ++++  s+++ia+++++ +  ++  +++L+++g+++
  gi|300712810|ref|YP_003738622.1| 11 RILYYLALDARNT--STSDIADEMEVTAATIRNRINQLEEEGILR 53
                                      79*******9975..***************************986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.6e-05     0.036       7      49 ..      11      53 ..      11      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.6e-05
                                      HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                          HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                                      +iL +la  ++  + s++A++  ++ +t ++ ++ L+e+G+++
  gi|300712810|ref|YP_003738622.1| 11 RILYYLALDARNTSTSDIADEMEVTAATIRNRINQLEEEGILR 53
                                      5899999999999***************************997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.7e-05      0.06      17      46 ..      22      51 ..      10      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.7e-05
                            HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                                        s+++IA+e+ v+  T+++ ++  +eeG+
  gi|300712810|ref|YP_003738622.1| 22 NTSTSDIADEMEVTAATIRNRINQLEEEGI 51
                                      6799********************999995 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.4e-05     0.074       4      46 ..      11      53 ..       8      55 .. 0.87
   2 ?   -2.1   0.0       6.7   5.2e+03      19      32 ..     179     192 ..     176     193 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.4e-05
                                      HHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEE CS
                              FaeA  4 eIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkik 46
                                       Il yl        T++iAd + ++a  +R  ++qLe eg ++
  gi|300712810|ref|YP_003738622.1| 11 RILYYLALDARNTSTSDIADEMEVTAATIRNRINQLEEEGILR 53
                                      57888876566789**************************886 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.7
                                       HHHHHHHTS-HHHH CS
                              FaeA  19 reiAdalglsaYQa 32 
                                       +e A+ +gl++ Qa
  gi|300712810|ref|YP_003738622.1| 179 SEGAEVAGLTIEQA 192
                                       5779999**99997 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012     0.095      25      55 .]      22      52 ..       7      52 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
                            HTH_36 25 fpsqetlakrlglsknTvsraikeLeqlGyi 55
                                      + s +++a  +++   T+++ i+ Le+ G++
  gi|300712810|ref|YP_003738622.1| 22 NTSTSDIADEMEVTAATIRNRINQLEEEGIL 52
                                      3499***********************9986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00027      0.21      12      41 ..      22      51 ..      12      56 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00027
                            HTH_28 12 GhsvreaArelgisrrtvyrWikryeegGi 41
                                        s +++A e+ ++  t++  i+++ee+Gi
  gi|300712810|ref|YP_003738622.1| 22 NTSTSDIADEMEVTAATIRNRINQLEEEGI 51
                                      448899***********************8 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00012      0.09     114     148 ..      23      57 ..       5      59 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
                                       E-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE- CS
                             DDRGK 114 vlleelavkfklktqevierikeLeeqgsltGvlD 148
                                       +   ++a ++++++  +++ri++Lee+g l G l 
  gi|300712810|ref|YP_003738622.1|  23 TSTSDIADEMEVTAATIRNRINQLEEEGILRGYLA 57 
                                       55689**************************9875 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00031      0.24       5      41 ..      15      51 ..      11      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00031
                            HTH_29  5 llllaeGvstvsqiAkllglsrrtvyrwlkrfeegGl 41
                                       l+l+    ++s+iA  + ++  t+++ ++  ee+G+
  gi|300712810|ref|YP_003738622.1| 15 YLALDARNTSTSDIADEMEVTAATIRNRINQLEEEGI 51
                                      56666666679*************************6 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00024      0.18      15      50 ..      11      45 ..      10      47 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
                      HTH_Tnp_ISL3 15 rleayilelllesrsvkavArqlgvSwtTVwrildr 50
                                      r  +y +  ++++ s +++A+++ v++ T+++++++
  gi|300712810|ref|YP_003738622.1| 11 RILYYLALDARNT-STSDIADEMEVTAATIRNRINQ 45
                                      6678888899999.*******************997 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0004      0.31       7      34 ..      25      52 ..      20      55 .. 0.92
   2 ?   -3.2   0.1         8   6.3e+03      29      39 ..      90     100 ..      81     104 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0004
                          HTH_CodY  7 askiaDriGitrsvivnaLrkLesaGii 34
                                       s iaD++ +t + i n + +Le  Gi+
  gi|300712810|ref|YP_003738622.1| 25 TSDIADEMEVTAATIRNRINQLEEEGIL 52
                                      699***********************97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8
                          HTH_CodY  29 esaGiiesrsL 39 
                                       e +G+i  r L
  gi|300712810|ref|YP_003738622.1|  90 EISGVITVREL 100
                                       56789888876 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00042      0.33      15      46 ..      18      48 ..       6      63 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00042
                           HTH_Mga 15 teneksltldelakeLglseltlqsdiseLne 46
                                      ++ ++ ++++++a e+  +  t++++i++L e
  gi|300712810|ref|YP_003738622.1| 18 LD-ARNTSTSDIADEMEVTAATIRNRINQLEE 48
                                      56.9999***********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1755.93
//
Query:       gi|300712811|ref|YP_003738623.1|  [L=165]
Description: hypothetical protein HacjB3_17448 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-10   38.9   0.0    9.1e-10   38.5   0.0    1.2  1  Polbeta         Polymerase beta, Nucleotidyltransferase
    1.3e-09   38.2   0.2      2e-09   37.6   0.2    1.3  1  NTP_transf_2    Nucleotidyltransferase domain
     0.0078   16.4   0.1      0.012   15.8   0.1    1.3  1  DNA_pol_B_palm  DNA polymerase beta palm
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.018   14.9   0.0    1.2  1  Adenyl_cycl_N   Adenylate cyclase NT domain
       0.18   12.0   0.0       0.36   11.0   0.0    1.5  1  DUF5606         Domain of unknown function (DUF5606)


Domain annotation for each model (and alignments):
>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.5e-13   9.1e-10       4      91 ..      52     148 ..      49     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 2.5e-13
                                       TTTHHHHHHHHSTTEEEEEE-S------EEEEEEEESS-..--HHHHHHHHHHHHHH......SSSEEEEEETTTS- CS
                           Polbeta   4 keilekekeielaylFGSrakgkareeSDiDlavllkek..ldleeelelaaeledi.....klgkkvDlvdlneap 73 
                                       +e+ ek +++  ++l+GS+a+g+a ++SDiDl vl+++   +   e   +a +le++     +  +++D+  +++ p
  gi|300712811|ref|YP_003738623.1|  52 EELREKISDVVGVILYGSVARGEADRRSDIDLWVLTRSGraEGQREANAVARDLEEVsfdgdRYAYDIDVEAVQAIP 128
                                       66778889******************************988788889999*******99888778999999999877 PP

                                       HHH..HHHHHHS-EEEES-S CS
                           Polbeta  74 pll..lyeilkegkllyskd 91 
                                       ++   ++ei+ +g+ +y+++
  gi|300712811|ref|YP_003738623.1| 129 TYTedIREIVVSGIPIYKTS 148
                                       55422689999999999876 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.2   5.5e-13     2e-09       2      64 ..      48     132 ..      47     159 .. 0.68

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 5.5e-13
                                       HHHHHHHHHHTT.TSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHH.......................HHHEHHH CS
                      NTP_transf_2   2 kklleelkelep.vakvvlfGSyarGtalkgSDiDllvvlpeevsre.......................kkeegle 54 
                                       k + eel+e+ + v+ v+l+GS+arG+a + SDiDl v++++   r                         ++   e
  gi|300712811|ref|YP_003738623.1|  48 KAAVEELREKISdVVGVILYGSVARGEADRRSDIDLWVLTRSG--RAegqreanavardleevsfdgdryAYDIDVE 122
                                       5678999999999****************************99..44357777777777776655444443333334 PP

                                       HHHHHCCCEE CS
                      NTP_transf_2  55 klaeiikfle 64 
                                       +   i+  +e
  gi|300712811|ref|YP_003738623.1| 123 AVQAIPTYTE 132
                                       4444444444 PP

>> DNA_pol_B_palm  DNA polymerase beta palm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.3e-06     0.012       1      61 [.      37      99 ..      37     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.3e-06
                                      -EEHHHHHH.HHHHHHHHHHHH-TT-EEEE-HHHHTT-SE.ESSEEEEEEBTTBSTTSS--HH CS
                    DNA_pol_B_palm  1 riPreEvea.lealvkkaakeldpevevivcGSYRRgaes.sGDvDvlitkkdakseskklkk 61
                                      riP+ E ++ ++a+v++  +++++ v vi  GS  Rg+++   D+D+ +  + +++e +++ +
  gi|300712811|ref|YP_003738623.1| 37 RIPQPEYHRpVKAAVEELREKISDVVGVILYGSVARGEADrRSDIDLWVLTRSGRAEGQREAN 99
                                      89**998763789999******************999765279****8887777776444433 PP

>> Adenyl_cycl_N  Adenylate cyclase NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   5.1e-06     0.018      84     126 ..      53      95 ..      39     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.1e-06
                     Adenyl_cycl_N  84 kekakeaaieglylmGStgsiaqsekSDlDiWvchrselsaee 126
                                       + ++k  ++ g+ l GS++      +SD+D+Wv +rs   + +
  gi|300712811|ref|YP_003738623.1|  53 ELREKISDVVGVILYGSVARGEADRRSDIDLWVLTRSGRAEGQ 95 
                                       334466899*************************998766655 PP

>> DUF5606  Domain of unknown function (DUF5606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.36      21      43 ..       6      28 ..       4      30 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
                           DUF5606 21 rngfIvEsLddkkripvsardkv 43
                                       ng++vEsL++++r++   rd++
  gi|300712811|ref|YP_003738623.1|  6 SNGLVVESLESNQRLVQINRDRL 28
                                      79************998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1254.13
//
Query:       gi|300712812|ref|YP_003738624.1|  [L=147]
Description: hypothetical protein HacjB3_17453 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1210.62
//
Query:       gi|300712813|ref|YP_003738625.1|  [L=137]
Description: hypothetical protein HacjB3_17458 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1001.99
//
Query:       gi|300712814|ref|YP_003738626.1|  [L=289]
Description: ATPase involved in chromosome partitioning-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-19   68.8   0.0    7.2e-19   68.4   0.0    1.1  1  AAA_31    AAA domain
    3.6e-05   23.8   0.0    6.6e-05   23.0   0.0    1.3  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
  ------ inclusion threshold ------
       0.22   11.4   0.0       0.41   10.5   0.0    1.4  1  DUF4295   Domain of unknown function (DUF4295)


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   1.2e-22   7.2e-19      22     159 ..       3     153 ..       1     165 [. 0.83

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 1.2e-22
                            AAA_31  22 laaalaklgkkvLlvDlDpQa.nattglgiekne.......iektlyevlieeknikeaiiktkvenldlipssidL 90 
                                        aaa+ + g+ vL  DlDpQ  ++t ++g+++ +       +e t++++++ +++++++i+  ++ + dl+p++ dL
  gi|300712814|ref|YP_003738626.1|   3 TAAAIGRDGYDVLALDLDPQRgALTHYAGYDHLDhdtpdktVEPTVMDTFFGNTDLEDIIV--STPHFDLVPGHEDL 77 
                                       5889999*************7256777777655545666668889999999**********..55689********* PP

                            AAA_31  91 aeaeielvelekk....eeilkellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaea...yaleGleq 159
                                       +++e  l + +++      +++e+le+++d+YD+ i+D++ +L+ l++na++a+  +++p++ ++    + +Gle+
  gi|300712814|ref|YP_003738626.1|  78 SNFESALNSSDRRgvdeYWVIREQLEQLSDQYDVFILDVQATLNDLVDNAIIAARNIMVPIELTPkgdASQQGLES 153
                                       *******99999877633447****************************************986533356666655 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.1e-08   6.6e-05      20     115 ..       4     207 ..       2     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.1e-08
                                       HHHHHHTT--EEEEEEEESSCCCCH......HTTEB-HHHH.................................... CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxx.................................... RF
                              CbiA  20 aralarrglrVllvDaDpqannlai......leglendiep.................................... 54 
                                       a+a+ r+g++Vl++D+Dpq+ +l++      l       +                                     
  gi|300712814|ref|YP_003738626.1|   4 AAAIGRDGYDVLALDLDPQRGALTHyagydhL------DHDtpdktveptvmdtffgntdlediivstphfdlvpgh 74 
                                       788999**************999995443332......33335667799**************************** PP

                                       ........................................................................CCHCC CS
                                       ........................................................................xxxxx RF
                              CbiA  55 ........................................................................dlkrl 59 
                                                                                                               + + l
  gi|300712814|ref|YP_003738626.1|  75 edlsnfesalnssdrrgvdeywvireqleqlsdqydvfildvqatlndlvdnaiiaarnimvpieltpkgdaSQQGL 151
                                       **********************************************************************9866666 PP

                                       CHHHHHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHHHHHHCTS-EEE.EEE-- CS
                                       xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
                              CbiA  60 lellealgkkkall...lkiagvvlnrvdgeneetllkealeelkqrygvpvlg.viprd 115
                                       + ++ a++ ++++    + i+g v+ rv++ + +++ ++++ ++    gvp+   +ip+ 
  gi|300712814|ref|YP_003738626.1| 152 ESTVGAMDSGFSKMgvdIVIKGTVPSRVGNAKIFEQYRDSMSDR----GVPLSPfSIPEH 207
                                       667788888887778889***********************998....999888888875 PP

>> DUF4295  Domain of unknown function (DUF4295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.8e-05      0.41      29      47 ..     251     269 ..     248     269 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.8e-05
                           DUF4295  29 TGaYtFkEeiVpkdqVkdf 47 
                                       TG Yt++E + + d+Vkd+
  gi|300712814|ref|YP_003738626.1| 251 TGDYTYDEAVAQWDAVKDM 269
                                       9****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2144.91
//
Query:       gi|300712815|ref|YP_003738627.1|  [L=401]
Description: hypothetical protein HacjB3_17468 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-15   55.2   0.1    1.2e-14   54.0   0.1    1.7  1  Cdc6_C        CDC6, C terminal winged helix domain
      3e-11   43.7   0.0    6.2e-11   42.7   0.0    1.4  1  AAA_22        AAA domain
      1e-08   35.8   0.4    3.9e-08   33.9   0.0    2.1  2  AAA_16        AAA ATPase domain
    8.8e-06   26.2   0.0    1.7e-05   25.2   0.0    1.6  1  AAA           ATPase family associated with various cellular 
     0.0052   15.9   0.0       0.11   11.6   0.0    2.1  2  Helveticin_J  Bacteriocin helveticin-J
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.022   14.7   0.0    1.5  1  NACHT         NACHT domain
      0.014   15.4   0.0      0.035   14.0   0.0    1.6  1  Microtub_bd   Microtubule binding
      0.017   14.3   0.0      0.028   13.6   0.0    1.3  1  NB-ARC        NB-ARC domain
      0.034   12.9   0.2       0.15   10.8   0.0    1.9  2  AAA_32        AAA domain
      0.056   12.5   0.0      0.099   11.7   0.0    1.4  1  T2SSE         Type II/IV secretion system protein
      0.069   12.9   1.7        1.4    8.7   0.3    2.6  2  DEAD          DEAD/DEAH box helicase
       0.43   10.9   1.8       0.69   10.3   0.1    2.1  2  PSD5          Protein of unknown function (DUF1595)


Domain annotation for each model (and alignments):
>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1     8e-18   1.2e-14       1      84 []     306     388 ..     306     388 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 8e-18
                                       HHHHHHHHCHCSSS-EEHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEEE-CC.C-EEEEEEESSS CS
                            Cdc6_C   1 LcalvlllrksgkeevttgevyevYkslCesegvdpltqrevsdllseLemlgileleksskGrregrtrkisLnvd 77 
                                       L+a+++ +  +++++v+ +++y++Yk l+++ ++d+ t r+++d ls+L  +gil+++++++G ++g+++++ +nvd
  gi|300712815|ref|YP_003738627.1| 306 LYAILSYAL-EDETPVRRKQIYQRYKLLADQIDADVKTARTIHDQLSQLTLKGILDVAERNEGIKGGNYYLYDFNVD 381
                                       899999999.9****************************************************************** PP

                                       CHHHHHH CS
                            Cdc6_C  78 pddvlea 84 
                                       +  +++a
  gi|300712815|ref|YP_003738627.1| 382 TAIIRDA 388
                                       *999875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   4.2e-14   6.2e-11       7     117 ..      53     169 ..      49     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 4.2e-14
                            AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelka...erlsseell 79 
                                        ++v+G++G+GKT++   +le+l+++a+  +  + e+v v ++s++ss ++  +l+++l  + +    +++ s +++
  gi|300712815|ref|YP_003738627.1|  53 NIFVYGQTGVGKTLSTDLVLEKLTQDANTYDdLSIEIVNVICKSLSSSYQVSIRLVNELRAPDDQialRGHGSGDVY 129
                                       689********************9988877799******************************99************ PP

                            AAA_22  80 ealeqalrarav.ielliiDEaqhlr.seealeeLrslln 117
                                       ++l+  l++ ++ ++l+++DE++ +   +++l eL ++  
  gi|300712815|ref|YP_003738627.1| 130 DMLWTELNQLDAtHVLFVLDEIDSIGtDDDILYELPRCNA 169
                                       ************9************655999999977755 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.6e-11   3.9e-08       2     149 ..      28     156 ..      27     173 .. 0.71
   2 ?   -1.3   0.2       1.7   2.5e+03     112     131 ..     248     267 ..     192     321 .. 0.53

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.6e-11
                            AAA_16   2 lvGReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqala 77 
                                       l+ R+ +l+  ++al++v  + p  +++++G+ GvGK+   + +l+ l++d     + ++d+l         +++  
  gi|300712815|ref|YP_003738627.1|  28 LIERDPQLADYQNALRPVINNAPpKNIFVYGQTGVGKTLSTDLVLEKLTQD-----ANTYDDL--------SIEIV- 90 
                                       789************************************************.....4555555........35555. PP

                            AAA_16  78 reellrqllde..aesaeleawrekleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwade 149
                                       +  +++ l +    + +++++ r+       ++ +l+g ++ ++++ l   l++l    + +++vlD+++ + +
  gi|300712815|ref|YP_003738627.1|  91 N-VICKSLSSSyqVSIRLVNELRA-----PDDQIALRGHGSGDVYDMLWTELNQLDA-TH-VLFVLDEIDSIGT 156
                                       4.5566665552212222333333.....2233346677777777777777766666.56.9999999987665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.7
                            AAA_16 112 agaeasrllellkrllalls 131
                                       ++ +a+r l+ l ++ +l++
  gi|300712815|ref|YP_003738627.1| 248 ESGSARRALRILYKAGDLAR 267
                                       22222333333333333333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.2e-08   1.7e-05       2     129 ..      55     207 ..      54     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.2e-08
                                       EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS...................STTHHHHHHHHH CS
                               AAA   2 llyGppGtGKTllakavakel..........gvefleisgsellsk...................yvgesekkirel 49 
                                        +yG  G+GKTl    v ++l          ++e++++ +++l s+                   + g+++ ++ ++
  gi|300712815|ref|YP_003738627.1|  55 FVYGQTGVGKTLSTDLVLEKLtqdantyddlSIEIVNVICKSLSSSyqvsirlvnelrapddqiaLRGHGSGDVYDM 131
                                       69******************7555444444468899999999998899*****************9******99988 PP

                                       HHH.HHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESS...GGGSTHHHHS CS
                               AAA  50 fke.akeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr...pdkldpallr 121
                                       + + + +   +++ +++DEid++++++         +++ +L +   + + ++  + vig++n+    d+l+  +  
  gi|300712815|ref|YP_003738627.1| 132 LWTeLNQLDaTHVLFVLDEIDSIGTDD---------DILYELPRCNANGNVDDTYIGVIGISNNfqfRDNLSARVKD 199
                                       75425554455577779******9888.........77888877777777777778888888885533444433333 PP

                                       TTSSEEEE CS
                               AAA 122 gRfdrkie 129
                                       + +d++i+
  gi|300712815|ref|YP_003738627.1| 200 SLCDEEIH 207
                                       66666665 PP

>> Helveticin_J  Bacteriocin helveticin-J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.065        98     119     157 ..     151     186 ..     137     190 .. 0.81
   2 !   11.6   0.0   7.3e-05      0.11     245     304 ..     267     327 ..     246     327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.065
                      Helveticin_J 119 agktgtdggvaysGkeleRveAavspdgkylliasidsn 157
                                         + gtd+ + y   el R++A  + d +y+ ++ i++n
  gi|300712815|ref|YP_003738627.1| 151 IDSIGTDDDILY---ELPRCNANGNVDDTYIGVIGISNN 186
                                       556677777778...89**************99999886 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.3e-05
                      Helveticin_J 245 getdsdewkvvnl.dndekidllgsvtEiEgiqvinkndlyltvaYhrksdlktkknriYs 304
                                       ++td + ++ +++ + d  ++  +++ E+E++ v+n+ +ly++ +Y  + +   ++++iY+
  gi|300712815|ref|YP_003738627.1| 267 RQTDRSTITEADVrEADRVVEEGKTKAELESLPVQNHITLYAILSYALEDETPVRRKQIYQ 327
                                       678999999999944556677788899********************99999999999996 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.4e-05     0.022       3      98 ..      54     159 ..      52     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                                       EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC..-SEEEEEETTTTTTS-...........-HCHHHCCCCTS--SSS CS
                             NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga..fklvFflslrelsrsgna........rsladllfsqlpepaapv 69 
                                       +++ G+ G+GKT     + +++ ++    +    + v ++ +++ls s ++        r ++d+++  ++ +++  
  gi|300712815|ref|YP_003738627.1|  54 IFVYGQTGVGKTLSTDLVLEKLTQDANTYDDlsIEIVNVI-CKSLSSSYQVsirlvnelRAPDDQIALRGHGSGDVY 129
                                       799*********9877777777777655554224444444.444444444447788888999999999999999999 PP

                                       -CCHHHHCCS.CCCEEEEEE-STT-SS-TC CS
                             NACHT  70 sevwavllel.perlLlilDglDelvtdlg 98 
                                       +  w++l +l ++ +L++lD +D + td++
  gi|300712815|ref|YP_003738627.1| 130 DMLWTELNQLdATHVLFVLDEIDSIGTDDD 159
                                       99***998873789***********99876 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.3e-05     0.035      84     138 ..      52     108 ..      26     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
                                       EEEEEEES....................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEE CS
                       Microtub_bd  84 vcifaygqTGsGKtyTmeg....eeeeagmipraveeifetiselkekgwkyeielqfv 138
                                        +if ygqTG GKt   +      +++a++ + +  ei+++i +    + +y++++++v
  gi|300712815|ref|YP_003738627.1|  52 KNIFVYGQTGVGKTLSTDLvlekLTQDANTYDDLSIEIVNVICKS--LSSSYQVSIRLV 108
                                       58************8755544446677778888888899988888..778888887766 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.9e-05     0.028      22     112 ..      53     151 ..      40     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.9e-05
                                       EEEEEESTTSSHHHHHHHHCCSHCCCCCCBT....EEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTS.HH CS
                            NB-ARC  22 vvalvGmgGvGKttlakqilnksdevegrFd....svawvvvsktdkseeiletilkeLslseddleekeeves.lk 93 
                                        ++++G  GvGKt     +l+k+ +  +++d     ++ v     ++s+++  ++++eL   +d++    ++     
  gi|300712815|ref|YP_003738627.1|  53 NIFVYGQTGVGKTLSTDLVLEKLTQDANTYDdlsiEIVNVICKSLSSSYQVSIRLVNELRAPDDQIALRGHGSGdVY 129
                                       589*******************99999****763223444445567788999999****777666554443333666 PP

                                       HHHHHHCCCT...TEEEEEEEE CS
                            NB-ARC  94 rklvrlLltk...rfllvlDDV 112
                                       ++l   L++     +l+vlD +
  gi|300712815|ref|YP_003738627.1| 130 DMLWTELNQLdatHVLFVLDEI 151
                                       6665554443334899999987 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0001      0.15      32      64 ..      53      85 ..      45      87 .. 0.93
   2 ?   -0.6   0.1      0.29   4.3e+02     480     507 ..     255     282 ..     246     352 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
                            AAA_32 32 NifvlGesgtGrttlvkrlleeiakkeptpdDw 64
                                      Nifv G++g+G+t  +  +le+ +++++t dD+
  gi|300712815|ref|YP_003738627.1| 53 NIFVYGQTGVGKTLSTDLVLEKLTQDANTYDDL 85
                                      *****************************9996 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.29
                            AAA_32 480 iadllrEAdywakkegaevveaehVekA 507
                                          +l+ A  +a++ +++++++++V++A
  gi|300712815|ref|YP_003738627.1| 255 ALRILYKAGDLARQTDRSTITEADVREA 282
                                       5667888888888888888888888887 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.6e-05     0.099     108     156 ..      28      78 ..      11      93 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
                             T2SSE 108 lgaeealkekiaevlrkavre..rglilvsGgTgsGKttllyallkeinks 156
                                       l+ +  + ++++++lr  +++   ++i v G Tg GKt ++  +l+++ ++
  gi|300712815|ref|YP_003738627.1|  28 LIERDPQLADYQNALRPVINNapPKNIFVYGQTGVGKTLSTDLVLEKLTQD 78 
                                       4444444455555555554431179*******************9999876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3   0.00091       1.4       3      33 ..      38      70 ..      36     174 .. 0.79
   2 ?   -2.6   0.1       2.7     4e+03      62      94 ..     324     353 ..     322     361 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00091
                                      HHHHHHHHHH..TTCEEEEEESTTSSHHHHHHH CS
                                      xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
                              DEAD  3 iQaeaiplil..gggdvlvaaeTGsGKTlafli 33
                                      +Q +  p i     ++++v ++TG GKTl   +
  gi|300712815|ref|YP_003738627.1| 38 YQNALRPVINnaPPKNIFVYGQTGVGKTLSTDL 70
                                      5666666666333489************98655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
                                       HHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              DEAD  62 qtlnnlkkfkkyidlrvlliiggvaardqlskl 94 
                                       q+++++k + ++id  v+   +  + +dqls+l
  gi|300712815|ref|YP_003738627.1| 324 QIYQRYKLLADQIDADVK---TARTIHDQLSQL 353
                                       677777777776664443...445566666666 PP

>> PSD5  Protein of unknown function (DUF1595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00046      0.69       2      49 ..     216     261 ..     215     262 .. 0.85
   2 ?   -1.2   0.1       1.7   2.6e+03      15      38 ..     271     294 ..     264     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00046
                              PSD5   2 areflerfarrAfRRplteaeverllalfdsaresgesfeegvrlalq 49 
                                       +r++le+ a+ AfR  + ++++ +l a f+++ esg+  ++++r  ++
  gi|300712815|ref|YP_003738627.1| 216 LRHILETRAQPAFRNDVLTSDIIPLCAAFAAQ-ESGS-ARRALRILYK 261
                                       699***************************95.6666.6888876655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
                              PSD5  15 RRplteaeverllalfdsaresge 38 
                                       R  +tea+v +  +++++++++ e
  gi|300712815|ref|YP_003738627.1| 271 RSTITEADVREADRVVEEGKTKAE 294
                                       788999999999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2771.91
//
Query:       gi|300712816|ref|YP_003738628.1|  [L=640]
Description: Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-06   25.5   2.1     0.0032   16.9   0.8    2.2  2  SMC_N           RecF/RecN/SMC N terminal domain
    1.5e-05   25.2  54.7     0.0032   17.7   3.9    5.2  5  Seryl_tRNA_N    Seryl-tRNA synthetase N-terminal domain
    4.4e-05   22.5  69.6    0.00086   18.3  19.7    4.2  4  Spc7            Spc7 kinetochore protein
    0.00053   17.7  56.3      0.019   12.5  21.8    2.1  2  DUF3584         Protein of unknown function (DUF3584)
      0.001   19.3   7.3      0.001   19.3   7.3    5.5  5  Cortex-I_coil   Cortexillin I, coiled coil
      0.005   17.4  10.5      0.005   17.4  10.5    5.3  4  APG6_N          Apg6 coiled-coil region
     0.0075   16.3  32.0      0.042   13.9   2.8    5.0  4  DUF1664         Protein of unknown function (DUF1664)
     0.0088   16.0  17.5     0.0088   16.0  17.5    4.4  3  YscO            Type III secretion protein YscO
  ------ inclusion threshold ------
      0.028   15.3  11.5      0.028   15.3  11.5    5.3  6  PRKG1_interact  cGMP-dependent protein kinase interacting dom
      0.028   13.1  46.5     0.0092   14.7  13.6    2.7  3  AAA_13          AAA domain
      0.062   13.8  68.3    1.6e+02    2.6  42.3    4.9  1  AAA_23          AAA domain
       0.24   11.4  32.8       0.73    9.9   1.1    4.8  4  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
       0.98    9.1  20.5        5.2    6.7   5.7    3.1  2  AAA_15          AAA ATPase domain
        3.7    7.9  63.4       0.24   11.7  10.8    4.5  4  OmpH            Outer membrane protein (OmpH-like)
        5.5    6.2  58.9         14    4.9   5.8    4.1  5  DUF4407         Domain of unknown function (DUF4407)
        6.4    6.1  56.6        1.2    8.5  13.6    4.1  3  GAS             Growth-arrest specific micro-tubule binding
        6.8    4.7  60.1        1.9    6.6  28.4    2.2  2  FPP             Filament-like plant protein, long coiled-coil
        7.8    6.8  74.7       0.38   11.0  21.4    4.6  4  THOC7           Tho complex subunit 7
        8.3    7.0  30.5       0.61   10.6   0.9    6.4  5  NPV_P10         Nucleopolyhedrovirus P10 protein
        9.8    4.4  56.3        4.2    5.6  27.3    2.2  2  MAD             Mitotic checkpoint protein


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0024       2.1      17      58 ..      21      61 ..      11      71 .. 0.88
   2 !   16.9   0.8   3.6e-06    0.0032     135     198 ..     229     623 ..     115     638 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0024
                                      EEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTC CS
                                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                             SMC_N 17 tvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrs 58
                                      +++++f++++t++ G+N   ++++l+A++  LG + a +l+ 
  gi|300712816|ref|YP_003738628.1| 21 STSVEFTPGVTILAGRNATNRTSFLQALMAALGSDRA-SLKG 61
                                      67899****************************8776.7775 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 3.6e-06
                                       T............................................................................ CS
                                       x............................................................................ RF
                             SMC_N 135 e............................................................................ 135
                                       e                                                                            
  gi|300712816|ref|YP_003738628.1| 229 Eteqesvasleaeqseleaeleelsaidedelddlasqieqirgqkreldeiiaqlqtviqfneqitedgvtnllgk 305
                                       24444444444444444444556666666666666666666666666666666666666667777777777777777 PP

                                       ............................................................................. CS
                                       ............................................................................. RF
                             SMC_N 136 ............................................................................. 135
                                                                                                                    
  gi|300712816|ref|YP_003738628.1| 306 egpseteadggaitdqlladqsddvtcwtcgsqvgteqiestvsrlqdlrqekverrnelsrkleeltaqrkeytst 382
                                       77777777777777777777777777777777777777777777777777777777777777777777777788888 PP

                                       ............................................................................. CS
                                       ............................................................................. RF
                             SMC_N 136 ............................................................................. 135
                                                                                                                    
  gi|300712816|ref|YP_003738628.1| 383 rderaeleraletaeteladrtdriselearreellaetedlesaveadeddedllaaqkevtqlelkrdrlerkqn 459
                                       88888888888888888888888888888888888888888888888888888888888888888888889999999 PP

                                       ............................................................................. CS
                                       ............................................................................. RF
                             SMC_N 136 ............................................................................. 135
                                                                                                                    
  gi|300712816|ref|YP_003738628.1| 460 alaedieslesqldeqeqlearreeinteleelrtrieriereaieafnghmetvvelleygnlariwleyrnpnts 536
                                       99999999999999999999999999999999999999*************************************** PP

                                       ........................CS-HHHHHHHHHHHHHH...HHCC.S--SEEEECTTTTTS-HHHHHHHHHHHH CS
                                       ........................xxxxxxxxxxxxxxxxx...xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                             SMC_N 136 ........................lLSgGektLvalaLlfA...iqkv.kpaplyllDeidaaLDeknvkkvaellk 184
                                                                LS  e+ ++ l L +A   ++ v +  p+ llD ++a +D +++++++e+l+
  gi|300712816|ref|YP_003738628.1| 537 kdatfelhvtrktdddatyedsvtHLSESEREVTGLVLALAgylVHDVhEEMPFILLDSLEA-IDSARIAQLVEYLE 612
                                       *****************************************99966652678*******986.89999999999999 PP

                                       HHCTTSEEEEE-SS CS
                                       xxxxxxxxxxxxxx RF
                             SMC_N 185 eksknaQfivislr 198
                                       e      +iv++l 
  gi|300712816|ref|YP_003738628.1| 613 EYA---SYIVVALL 623
                                       877...67777765 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.9   3.6e-06    0.0032      22     101 ..     117     197 ..     107     202 .. 0.91
   2 ?    5.2   3.8     0.027        25      28      85 ..     232     293 ..     209     299 .. 0.74
   3 !    7.9   6.4     0.004       3.5      35      99 ..     345     409 ..     341     412 .. 0.86
   4 ?    2.5   0.2      0.19   1.7e+02      28      50 ..     404     426 ..     402     430 .. 0.86
   5 !   11.1  16.5   0.00039      0.35      21      97 ..     427     503 ..     414     508 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.6e-06
                                       T.CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
                      Seryl_tRNA_N  22 g.edkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleael 97 
                                         + ++d+ el+      +e+++++ +lqae+  +  + ++++++  ++++  +e + + ++l+++ea+l+e+++ l
  gi|300712816|ref|YP_003738628.1| 117 AvVRNEDLRELILRPVDVEEIEARISQLQAEKRGIDTQLSELSEASRERDSFEEEYARVTNQLETAEADLEEARNSL 193
                                       35678999999999999***********************************************************9 PP

                                       HHHH CS
                      Seryl_tRNA_N  98 ekll 101
                                       e++ 
  gi|300712816|ref|YP_003738628.1| 194 ETAQ 197
                                       9876 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.027
                                       HHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHH CS
                      Seryl_tRNA_N  28 vdelleldekrrelqveleelqa....erNelskeIgkakkkkedaeeliaevkelkeelka 85 
                                        +++ +l++++ el++eleel a    e   l+ +I+++  +k + +e+ia+ +++ +  ++
  gi|300712816|ref|YP_003738628.1| 232 QESVASLEAEQSELEAELEELSAidedELDDLASQIEQIRGQKRELDEIIAQLQTVIQFNEQ 293
                                       46678888888888888888876444466778888888888888888888888777665555 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.004
                                       HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
                      Seryl_tRNA_N  35 dekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 
                                       ++   +lq   +e  ++rNels++ +++ ++ ++ ++ ++e +el   l+++e+el++ ++++ +
  gi|300712816|ref|YP_003738628.1| 345 ESTVSRLQDLRQEKVERRNELSRKLEELTAQRKEYTSTRDERAELERALETAETELADRTDRISE 409
                                       55566677777888899***************************************998887765 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.19
                                       HHHHHHHHHHHHHHHHHHHHHHH CS
                      Seryl_tRNA_N  28 vdelleldekrrelqveleelqa 50 
                                        d++ el+++r+el +e+e+l +
  gi|300712816|ref|YP_003738628.1| 404 TDRISELEARREELLAETEDLES 426
                                       58999999999999999999875 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00039
                                       CTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
                      Seryl_tRNA_N  21 RgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleael 97 
                                         e+++d ++ll+++++  +l+ + + l +++N+l++ I+++  + ++ e+l a+ +e+++el++l ++ + +e e 
  gi|300712816|ref|YP_003738628.1| 427 AVEADEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIESLESQLDEQEQLEARREEINTELEELRTRIERIEREA 503
                                       4467788899*************************************************************999876 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.8      0.11        96     214     245 ..     133     164 ..     122     177 .. 0.63
   2 !   18.3  19.7   9.6e-07   0.00086     142     271 ..     170     302 ..     166     305 .. 0.92
   3 !   11.8  15.7     9e-05      0.08     156     242 ..     342     427 ..     336     433 .. 0.78
   4 !    6.6  12.3    0.0035       3.1     210     285 ..     432     506 ..     427     524 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.11
                              Spc7 214 eieekkkelaelqeqleeleekieelkeqkse 245
                                       ++ee ++++++lq+++  ++++++el+e  +e
  gi|300712816|ref|YP_003738628.1| 133 DVEEIEARISQLQAEKRGIDTQLSELSEASRE 164
                                       56666677777777777766666666554444 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 9.6e-07
                              Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieek 218
                                       e++ +  ++le+ ++ Le+ ++ l+++ ++++  +++ +++l++l++a+ +le+ +  +Le+ +e++a+l+ae +e+
  gi|300712816|ref|YP_003738628.1| 170 EEYARVTNQLETAEADLEEARNSLETAQQSTSDSESTGSDQLDSLRDAQSQLED-TTYDLETEQESVASLEAEQSEL 245
                                       667778899******************************************998.5678999999999999999999 PP

                              Spc7 219 kkelael....qeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrl 271
                                       ++el+el    +++l++l+++ie+++ qk+el e ia+ + v++ +++++e+ v +l
  gi|300712816|ref|YP_003738628.1| 246 EAELEELsaidEDELDDLASQIEQIRGQKRELDEIIAQLQTVIQFNEQITEDGVTNL 302
                                       9999998555568**************************************999876 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 9e-05
                              Spc7 156 elLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleel 232
                                       e++e+  + l++l +e +e+++el+++le+l ++++e + ++++e +el ++l+++++e++ + ++++el++++eel
  gi|300712816|ref|YP_003738628.1| 342 EQIESTVSRLQDLRQEKVERRNELSRKLEELTAQRKEYT-STRDERAELERALETAETELADRTDRISELEARREEL 417
                                       677888888888888888888999999998888887744.4677778888888888888888888888888888888 PP

                              Spc7 233 eekieelkeq 242
                                        ++ e+l++ 
  gi|300712816|ref|YP_003738628.1| 418 LAETEDLESA 427
                                       8888888664 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0035
                              Spc7 210 elkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwk 285
                                       e ++++ + +ke+++l+ ++++le k ++l+e +++le+++ e+e+ le++++  ++e+++l+++ +++e++   +
  gi|300712816|ref|YP_003738628.1| 432 EDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIESLESQLDEQEQ-LEARREEINTELEELRTRIERIEREAIEA 506
                                       5678888899999999999999999999999999999999997665.56678888899999999999999876555 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5  21.8   2.1e-05     0.019     270     408 ..     136     276 ..     120     303 .. 0.75
   2 !   11.1  26.5   5.8e-05     0.052     254     422 ..     341     508 ..     334     569 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
                           DUF3584 270 elkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyed...adi 343
                                       e++a +++l+ ++  ++++  el  +++ ++d ++e+ ++++++l++a+a+l+++++ le ++++  + e    +++
  gi|300712816|ref|YP_003738628.1| 136 EIEARISQLQAEKRGIDTQLSELS-EASRERDSFEEEYARVTNQLETAEADLEEARNSLETAQQSTSDSEStgsDQL 211
                                       566777777777777777777775.56677899*****************************999888876222567 PP

                           DUF3584 344 eklkadldqlpsirseleeleeeldaltekhqdvqekydrrkqkikeeleeeleklkerleaire 408
                                       ++l+  ++ql+ +  +le  +e+++ l+ ++ +++++++++ +  ++el +  +++++ + + re
  gi|300712816|ref|YP_003738628.1| 212 DSLRDAQSQLEDTTYDLETEQESVASLEAEQSELEAELEELSAIDEDELDDLASQIEQIRGQKRE 276
                                       78888999999999999999999999999999999999999876666666555555554333333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.8e-05
                           DUF3584 254 feqleslelrLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselea 330
                                       +eq+es + rL+ l +e ++  ++l++k+ee  ++ +e+ +  r +++el+ a ++++ el +  + +++ e++ e+
  gi|300712816|ref|YP_003738628.1| 341 TEQIESTVSRLQDLRQEKVERRNELSRKLEELTAQRKEYTST-RDERAELERALETAETELADRTDRISELEARREE 416
                                       789999999999999999999999999999999888888654.5566777777777777777777777777777777 PP

                           DUF3584 331 leeqkkkyedadieklkadldqlpsirseleeleeeldaltekhqdvqekydrrkqkikeele..eeleklkerlea 405
                                       l ++ ++ e   + ++ +d + l + ++e+++le + d+l+ k++++ e  + ++++++e+ +  +  e+++ +le+
  gi|300712816|ref|YP_003738628.1| 417 LLAETEDLES-AV-EADEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIESLESQLDEQEQleARREEINTELEE 491
                                       7666666542.23.334444445555666666666666666666666666666666655443300333444455555 PP

                           DUF3584 406 ireekdrlkaaieeale 422
                                       +r   +r   ++ ea++
  gi|300712816|ref|YP_003738628.1| 492 LRTRIERIEREAIEAFN 508
                                       55555554333333333 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       1.9   1.7e+03      71     103 ..     124     156 ..      99     161 .. 0.61
   2 ?   -1.5  12.5       3.4     3e+03      13      92 ..     167     246 ..     156     263 .. 0.65
   3 ?    1.8   5.5       0.3   2.7e+02       3      51 ..     234     286 ..     232     300 .. 0.67
   4 ?    0.9  14.1      0.57   5.1e+02      16      78 ..     360     425 ..     342     451 .. 0.65
   5 !   19.3   7.3   1.1e-06     0.001       4     102 ..     451     545 ..     447     550 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.9
                                       HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH CS
                     Cortex-I_coil  71 lknleleklarlelesrlsktekdkailelkla 103
                                       l++l l  +   e+e+r+s+++ +k  ++ +l+
  gi|300712816|ref|YP_003738628.1| 124 LRELILRPVDVEEIEARISQLQAEKRGIDTQLS 156
                                       444444444444677777777766665555555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.4
                                       XHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     Cortex-I_coil  13 elanklaglenslesekvsreelikqkdelesllasleseaaerekrlreleakldealknleleklarlelesrls 89 
                                       ++ +  a + n le+     ee  +  +  +++ +  es + ++   lr+ +++l+++  +le e+ +   le+  s
  gi|300712816|ref|YP_003738628.1| 167 SFEEEYARVTNQLETAEADLEEARNSLETAQQSTSDSESTGSDQLDSLRDAQSQLEDTTYDLETEQESVASLEAEQS 243
                                       45555666666666666655555555555556666667777777788888888888888888887766666666666 PP

                                       HHH CS
                     Cortex-I_coil  90 kte 92 
                                        +e
  gi|300712816|ref|YP_003738628.1| 244 ELE 246
                                       555 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.3
                                       XXXXXXXXXXXHHHHHHHHHHHHHHH...HHHH.HHHHHHHHHHHHHHHHHHH CS
                     Cortex-I_coil   3 ekerleasknelanklaglenslese...kvsr.eelikqkdelesllasles 51 
                                         + lea ++el + l  l    e e     s+ e++  qk el++++a l++
  gi|300712816|ref|YP_003738628.1| 234 SVASLEAEQSELEAELEELSAIDEDElddLASQiEQIRGQKRELDEIIAQLQT 286
                                       55789999999998887776555544221244426777799999999998875 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.57
                                       HHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     Cortex-I_coil  16 nklaglenslesekvsreelikq...kdelesllasleseaaerekrlreleakldealknlelek 78 
                                       ++   l + le     r+e       + ele  l + e+e a+r  r+ elea+ +e l + e+  
  gi|300712816|ref|YP_003738628.1| 360 ERRNELSRKLEELTAQRKEYTSTrdeRAELERALETAETELADRTDRISELEARREELLAETEDLE 425
                                       444445555555555555554440005579999999999********************9877533 PP

  == domain 5  score: 19.3 bits;  conditional E-value: 1.1e-06
                                       XXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
                     Cortex-I_coil   4 kerleasknelanklaglenslesekvsreelikqkdelesllasleseaaerek.rlreleakldealknlelekl 79 
                                       ++rle  +n la+ + +le  l      +e+l  +++e++  l  l+++ ++ e+  +  ++  ++ ++  le  +l
  gi|300712816|ref|YP_003738628.1| 451 RDRLERKQNALAEDIESLESQL----DEQEQLEARREEINTELEELRTRIERIEReAIEAFNGHMETVVELLEYGNL 523
                                       7899999999999987666555....579*****************999887765258889**************** PP

                                       HHHHHHHHHHHHHHHCHHHHHHH CS
                     Cortex-I_coil  80 arlelesrlsktekdkailelkl 102
                                       ar+ le r   t kd a +el +
  gi|300712816|ref|YP_003738628.1| 524 ARIWLEYRNPNTSKD-ATFELHV 545
                                       **************9.5567766 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4  10.5   5.6e-06     0.005      64     131 ..     135     202 ..     122     204 .. 0.93
   2 ?    5.3  16.5     0.031        27      33      96 ..     212     279 ..     208     297 .. 0.74
   3 ?    1.9  34.9      0.34   3.1e+02      11     132 ..     348     471 ..     344     473 .. 0.73
   4 ?   -2.8  20.4       9.7   8.7e+03      45      97 ..     450     502 ..     434     523 .. 0.43

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.6e-06
                            APG6_N  64 eelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyehaqn 131
                                       ee ++ + +l++e++ ++ +l++l+e +++++  ee++ r  n+l++  ++lee ++sle++ + +++
  gi|300712816|ref|YP_003738628.1| 135 EEIEARISQLQAEKRGIDTQLSELSEASRERDSFEEEYARVTNQLETAEADLEEARNSLETAQQSTSD 202
                                       56678899*****************************************************9998875 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.031
                            APG6_N  33 kklkkekkeeekqdeeleeleeeleklekeeeelleeLkel....ekereeleaelaaleeelealee 96 
                                       + l++ +++ e++  +le  +e+++ le+e++el++eL+el    e+e ++l++++++++ ++++l+e
  gi|300712816|ref|YP_003738628.1| 212 DSLRDAQSQLEDTTYDLETEQESVASLEAEQSELEAELEELsaidEDELDDLASQIEQIRGQKRELDE 279
                                       44555555555566788888999999999999999999999555566777888888888888888876 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.34
                            APG6_N  11 leeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaal 87 
                                       +++l+   ++  + r+++++ l++l++++ke +++++e++ele+ le+ e e ++    + ele+ reel ae ++l
  gi|300712816|ref|YP_003738628.1| 348 VSRLQDLRQEKVERRNELSRKLEELTAQRKEYTSTRDERAELERALETAETELADRTDRISELEARREELLAETEDL 424
                                       56666666777778888899999999998888778899999999999999999999999999999999999999999 PP

                            APG6_N  88 eeelealeeeeerfwreyne..lqlelleleeeldsleaqyehaqnq 132
                                       e+  ea e++e+    +     l+l+  +le ++++l+  +e  ++q
  gi|300712816|ref|YP_003738628.1| 425 ESAVEADEDDEDLLAAQKEVtqLELKRDRLERKQNALAEDIESLESQ 471
                                       98777777777655555544015555556677777777666666555 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 9.7
                            APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeee 97 
                                       +++ le+ ++ l++  +  e+ l e ++le+ ree++ el++l+   e++e+e
  gi|300712816|ref|YP_003738628.1| 450 KRDRLERKQNALAEDIESLESQLDEQEQLEARREEINTELEELRTRIERIERE 502
                                       22222222222222222222233333444555555555555555555554444 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   3.7    0.0027       2.4      36     119 ..     165     251 ..     154     255 .. 0.66
   2 ?    4.6   0.8     0.035        32      80     118 ..     251     289 ..     243     295 .. 0.74
   3 ?    6.1   2.1     0.012        11      47     118 ..     341     415 ..     335     422 .. 0.85
   4 !   13.9   2.8   4.7e-05     0.042      48     116 ..     445     514 ..     435     521 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0027
                           DUF1664  36 krslsdavesvskqleqvseslaatkrhLssridrvdkkl...deqkeiskeikeevtevredlseigedvesvkea 109
                                       + s+++  ++v++qle+  ++l+++++ L+   ++  ++     +q +  ++ ++++++   dl++ +e v s+++ 
  gi|300712816|ref|YP_003738628.1| 165 RDSFEEEYARVTNQLETAEADLEEARNSLETAQQSTSDSEstgSDQLDSLRDAQSQLEDTTYDLETEQESVASLEAE 241
                                       5678888999****************999776555444330003444444445555555555555555555666666 PP

                           DUF1664 110 vegleskler 119
                                        ++le++le+
  gi|300712816|ref|YP_003738628.1| 242 QSELEAELEE 251
                                       6666666655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.035
                           DUF1664  80 eiskeikeevtevredlseigedvesvkeavegleskle 118
                                       e+s+  ++e++++ +++++i+ + ++++e++ +l++ ++
  gi|300712816|ref|YP_003738628.1| 251 ELSAIDEDELDDLASQIEQIRGQKRELDEIIAQLQTVIQ 289
                                       444444678999999999999999999999999988765 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.012
                           DUF1664  47 skqleqvseslaatkrhLssridrvdkkldeqkeiske...ikeevtevredlseigedvesvkeavegleskle 118
                                       ++q+e+  + l++ +++  +r +++ +kl+e ++  ke   +++e +e+++ l++ ++++    + +++le++ e
  gi|300712816|ref|YP_003738628.1| 341 TEQIESTVSRLQDLRQEKVERRNELSRKLEELTAQRKEytsTRDERAELERALETAETELADRTDRISELEARRE 415
                                       579999999*******************99988876643238999999**********99999999999998755 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 4.7e-05
                           DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeis...keikeevtevredlseigedvesvkeaveglesk 116
                                       +qle   + l++ ++ L+++i++++++ldeq+++    +ei+ e++e+r  +++i+++   +++   ++e+ 
  gi|300712816|ref|YP_003738628.1| 445 TQLELKRDRLERKQNALAEDIESLESQLDEQEQLEarrEEINTELEELRTRIERIEREA--IEAFNGHMETV 514
                                       5899999**********************99887522278999*********9998763..44444444444 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   8.7     0.029        26      64     140 ..     147     223 ..     122     224 .. 0.75
   2 !   16.0  17.5   9.8e-06    0.0088      16     126 ..     176     286 ..     167     298 .. 0.88
   3 ?    5.6  15.8     0.016        14      58     144 ..     334     420 ..     319     427 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.029
                                       -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              YscO  64 llkelekvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearraveKfaelarlvraeasrqqerkEe 140
                                       + + +++  ++++    +  + e++ +++++qle ++  l++ar+ l+ a++ ++  +   +++  + +  q ++E+
  gi|300712816|ref|YP_003738628.1| 147 EKRGIDTQLSELSEASRERDSFEEEYARVTNQLETAEADLEEARNSLETAQQSTSDSESTGSDQLDSLRDAQSQLED 223
                                       446677777777777777777899999************************99988777777777666666666666 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 9.8e-06
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              YscO  16 ekalkrqeqalaeareaheqaresladyrawraqeearlyaeiigklvllkelekvkqqvalLrekeaelekqveea 92 
                                        ++l+++e+ l+ear+ +e+a++s  d + +  ++ + l ++  +    + +le+ ++ va+L++++ ele ++ee+
  gi|300712816|ref|YP_003738628.1| 176 TNQLETAEADLEEARNSLETAQQSTSDSESTGSDQLDSLRDAQSQLEDTTYDLETEQESVASLEAEQSELEAELEEL 252
                                       578999****************************99999999888888999************************** PP

                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              YscO  93 kqqleaerealrqarkelqearraveKfaelarl 126
                                        +  e e++ l+++ ++++  +r+++++ +  ++
  gi|300712816|ref|YP_003738628.1| 253 SAIDEDELDDLASQIEQIRGQKRELDEIIAQLQT 286
                                       ************************9996443333 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.016
                                       HHTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              YscO  58 iigklvllkelekvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearraveKfaelarlvraeasrq 134
                                        +g+ v ++++e   ++++ Lr++  e+ +++ +  ++l+a r++ ++ r+e +e +ra+e  + + ++     s +
  gi|300712816|ref|YP_003738628.1| 334 TCGSQVGTEQIESTVSRLQDLRQEKVERRNELSRKLEELTAQRKEYTSTRDERAELERALETAETELADRTDRISEL 410
                                       7999**********************************************************999999999999999 PP

                                       HHHHHHHHGG CS
                              YscO 135 qerkEeqelE 144
                                         r+Ee+ +E
  gi|300712816|ref|YP_003738628.1| 411 EARREELLAE 420
                                       9999997544 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.0      0.34     3e+02      27      75 ..     134     181 ..     119     184 .. 0.62
   2 ?   15.3  11.5   3.1e-05     0.028      11      90 ..     170     249 ..     165     255 .. 0.93
   3 ?   -0.8   0.1       3.2   2.8e+03      14      34 ..     261     281 ..     250     302 .. 0.49
   4 ?    1.4  12.0      0.66   5.9e+02      18      90 ..     349     421 ..     337     424 .. 0.57
   5 ?    2.9  14.1      0.22     2e+02       3      93 ..     376     461 ..     374     468 .. 0.67
   6 ?    1.1  13.7      0.85   7.6e+02      18      89 ..     435     502 ..     425     511 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.34
                    PRKG1_interact  27 lselkseleklkqqrqesvskrssllelekrerrslerkiseleeelke 75 
                                       ++e+++++++l+ + ++ ++++ s l+  +rer s e++++++ ++l++
  gi|300712816|ref|YP_003738628.1| 134 VEEIEARISQLQAE-KRGIDTQLSELSEASRERDSFEEEYARVTNQLET 181
                                       45666666666644.3445555555555667777777777777777665 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.1e-05
                    PRKG1_interact  11 eenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkiseleeelkeleeLraenqrLk 87 
                                       ee  r  ++Le++e +l+e++++le+++q+ ++s s+ s  l+  +  +++le +  +le e++ ++ L ae++ L 
  gi|300712816|ref|YP_003738628.1| 170 EEYARVTNQLETAEADLEEARNSLETAQQSTSDSESTGSDQLDSLRDAQSQLEDTTYDLETEQESVASLEAEQSELE 246
                                       6778999*********************999999999999************************************9 PP

                    PRKG1_interact  88 dEn 90 
                                       +E 
  gi|300712816|ref|YP_003738628.1| 247 AEL 249
                                       995 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 3.2
                    PRKG1_interact  14 erLkreLeelekelselksel 34 
                                       + L +++e+++ +++el + +
  gi|300712816|ref|YP_003738628.1| 261 DDLASQIEQIRGQKRELDEII 281
                                       333333333333333333322 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.66
                    PRKG1_interact  18 reLeelekelselkseleklkqqrqesvskrssllelekrerrslerkis....eleeelkeleeLraenqrLkdEn 90 
                                       ++L++l++e+ e ++el++  ++    ++++ +     + er +ler +     el +    ++eL a  + L +E 
  gi|300712816|ref|YP_003738628.1| 349 SRLQDLRQEKVERRNELSRKLEE----LTAQRKEYTSTRDERAELERALEtaetELADRTDRISELEARREELLAET 421
                                       56777777777777777775433....33333333333444444444444111155555578888888888888775 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.22
                    PRKG1_interact   3 kkLYeeekeenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkiseleeelkeleeL 79 
                                       +k Y++ ++e+ +L r Le++e el++ + ++++l+ +r+e +++++ l ++      + ++   +l   +ke+++L
  gi|300712816|ref|YP_003738628.1| 376 RKEYTSTRDERAELERALETAETELADRTDRISELEARREELLAETEDLESAV-----EADEDDEDLLAAQKEVTQL 447
                                       56799******************************977655333333332222.....2223333444555666666 PP

                    PRKG1_interact  80 raenqrLkdEngAL 93 
                                         + +rL    +AL
  gi|300712816|ref|YP_003738628.1| 448 ELKRDRLERKQNAL 461
                                       66666666655555 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.85
                    PRKG1_interact  18 reLeelekelselkseleklkqqrqesvskrssllelekrerrslerkiseleeelkeleeLraenqrLkdE 89 
                                       + L  ++ke+++l+ + ++l+ ++q+ +++  ++le +  e+++le +  e++   +eleeLr+  +r+  E
  gi|300712816|ref|YP_003738628.1| 435 EDLLAAQKEVTQLELKRDRLE-RKQNALAEDIESLESQLDEQEQLEARREEIN---TELEELRTRIERIERE 502
                                       56788999*******999998.6688899999999999999999998877665...5667888888888766 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7  13.6     1e-05    0.0092     284     451 ..     133     286 ..     120     311 .. 0.72
   2 ?    4.0  23.8     0.017        15     280     445 ..     343     502 ..     338     519 .. 0.74
   3 ?    4.2  10.5     0.016        14     285     382 ..     421     522 ..     417     572 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
                            AAA_13 284 kqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfksvel.es 359
                                       ++e++e +i++++ +k+ + ++l ++s++++e+  fee+++ +++++e+ e+ L+++++ le   +  + s ++ ++
  gi|300712816|ref|YP_003738628.1| 133 DVEEIEARISQLQAEKRGIDTQLSELSEASRERDSFEEEYARVTNQLETAEADLEEARNSLETAQQSTSDSESTgSD 209
                                       57899*********************************************************999888875555255 PP

                            AAA_13 360 vkakiesikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeee 436
                                         + +  +++++++     +   e va+le+e++e++ +le   +   e+eld + ++++++  +  +l+       
  gi|300712816|ref|YP_003738628.1| 210 QLDSLRDAQSQLEDTTYDLETEQESVASLEAEQSELEAELEELSAI-DEDELDDLASQIEQIRGQKRELD------- 278
                                       5555566777777777777888888888888888888888873321.23344433333333333333333....... PP

                            AAA_13 437 aelkkleeeikeLek 451
                                              e i++L++
  gi|300712816|ref|YP_003738628.1| 279 -------EIIAQLQT 286
                                       .......22222222 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.017
                            AAA_13 280 efeekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkg...lqraleaKrkepfk 353
                                       + e  ++rL++l ++  ++++el+ kl++++++ +e+  ++++++el++++e+ e++L       ++lea+r+e+ +
  gi|300712816|ref|YP_003738628.1| 343 QIESTVSRLQDLRQEKVERRNELSRKLEELTAQRKEYTSTRDERAELERALETAETELADrtdRISELEARREELLA 419
                                       56778899999877666666789999******99999999999*************99885456678999**99999 PP

                            AAA_13 354 svelesvkakiesikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykklekaieklek 430
                                       + e  +++ ++++  +++ ++++ +++   k ++le++++++++++e  + + l+++ ++++   +++++++e+l +
  gi|300712816|ref|YP_003738628.1| 420 ETEDLESAVEADEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIESLESQ-LDEQ-EQLEARREEINTELEELRT 494
                                       7776666666677888899999999999999999999999999999984332.3222.3444444444444444444 PP

                            AAA_13 431 elkeeeaelkkleee 445
                                       +++        +e e
  gi|300712816|ref|YP_003738628.1| 495 RIER-------IERE 502
                                       4444.......4443 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.016
                            AAA_13 285 qerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfksvelesvk 361
                                       +e+Le+++e  e ++  ll+  k+v++ + ++ + e++++ l + +e le+qL++ q++lea+r+e+ +  ele++ 
  gi|300712816|ref|YP_003738628.1| 421 TEDLESAVEADEDDE-DLLAAQKEVTQLELKRDRLERKQNALAEDIESLESQLDE-QEQLEARREEINT--ELEELR 493
                                       566777776666665.577888888888989899999999999999999999988.5568999999988..444444 PP

                            AAA_13 362 akie........sikklvaeineliakhN 382
                                        +ie        +++  ++++ el +  N
  gi|300712816|ref|YP_003738628.1| 494 TRIEriereaieAFNGHMETVVELLEYGN 522
                                       44441112222266666666666666555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  42.3      0.18   1.6e+02       4     193 ..      13     268 ..      10     429 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.18
                            AAA_23   4 ienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkay.veltf 79 
                                       +e+++ ++ ++++F +g+t++ G N +  T++l+A+  aL+ + + l+++ +    +++v+++   ++++y  elt 
  gi|300712816|ref|YP_003738628.1|  13 VEHIGGIDSTSVEFTPGVTILAGRNATNRTSFLQALMAALGSDRASLKGDAD----QGSVTLSL--DDETYtRELTR 83 
                                       78999*************************************9888877655....66666655..45566666664 PP

                            AAA_23  80 enkdgry.................................................................trsie 91 
                                       + ++                                                                         
  gi|300712816|ref|YP_003738628.1|  84 SPDGVAFagdpyleepqladlfafllesnparravvrnedlrelilrpvdveeiearisqlqaekrgidtqlS---- 156
                                       3333333555556666666666666655555556666666666777766644444333333333222222220.... PP

                            AAA_23  92 rerelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkke............... 153
                                                         el e +  ++ ++e++ +  ++l+      +e                           
  gi|300712816|ref|YP_003738628.1| 157 ------------------ELSEASRERDSFEEEYARVTNQLETAEADLEEA----------Rnsletaqqstsdses 205
                                       ..................111112222222222221111221111111111..........0111111111222222 PP

                            AAA_23 154 .......rleelekeleeledekkllekl..............eqekekek...........eleeleeele 193
                                               l++++ +le+ + + +    +              e      +           el++l +++e
  gi|300712816|ref|YP_003738628.1| 206 tgsdqldSLRDAQSQLEDTTYDLET---EqesvasleaeqselE------AeleelsaidedELDDLASQIE 268
                                       2223111222222222222222221...1112322222121110......0111122222332222222222 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.1   0.00082      0.73      29      91 ..     138     197 ..     132     206 .. 0.80
   2 ?    4.7   6.1     0.032        29      22      90 ..     235     295 ..     206     305 .. 0.54
   3 ?    3.6   1.3     0.071        64      22      85 ..     351     419 ..     338     431 .. 0.66
   4 ?    8.9   2.2    0.0016       1.4      31      80 ..     443     500 ..     435     519 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00082
                      Baculo_PEP_C  29 nvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnln 91 
                                       ++ i +ql++ +  i+tqL++lse+ ++   +++++ + ++++L++a + l+ + rn L++ +
  gi|300712816|ref|YP_003738628.1| 138 EARI-SQLQAEKRGIDTQLSELSEASRE-RDSFEEEYARVTNQLETAEADLE-EARNSLETAQ 197
                                       5667.9***************9987665.78899999999999999999987.5677777665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.032
                      Baculo_PEP_C  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnl 90 
                                       ++++ + ++++ a+l++l +  e +L++l++++++ +  ++++ld+ +++L++ ++ +++++      +
  gi|300712816|ref|YP_003738628.1| 235 VASLEAEQSELEAELEELSAIDEDELDDLASQIEQ-IRGQKRELDEIIAQLQTVIQ-FNEQI------T 295
                                       34444455555555555555555555555555555.45555555555555555442.33333......3 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.071
                      Baculo_PEP_C  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq......dtlrn 85 
                                       L+++r  +v+  ++l++ l+++  q ++ ++  ++  ael+++l+t+ t+L d   +++      ++l  
  gi|300712816|ref|YP_003738628.1| 351 LQDLRQEKVERRNELSRKLEELTAQRKEYTS-TRDERAELERALETAETELADRTDRISelearrEELLA 419
                                       7778888888888888888888887777544.55557788888888888888777777755333333333 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0016
                      Baculo_PEP_C  31 qilaqlatlldaietqLnalsedlksllaeldt.........rldtlltnLtdalnalq 80 
                                       ++ +ql+   d +e++ nal+ed++sl ++ld+         +++t l++L + + +++
  gi|300712816|ref|YP_003738628.1| 443 EV-TQLELKRDRLERKQNALAEDIESLESQLDEqeqlearreEINTELEELRTRIERIE 500
                                       45.89999999999999999999999999998888444444444444444444444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.8     0.017        15      14     200 ..      19     291 ..      13     326 .. 0.46
   2 ?    6.7   5.7    0.0058       5.2     184     288 ..     401     544 ..     335     563 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.017
                            AAA_15  14 lkdveidlseeltvliGkNnsGKSsilealdlFlnnkekkn.................................... 54 
                                       ++++++++ + +t+l G+N++  +s+l+al   l  + + +                                    
  gi|300712816|ref|YP_003738628.1|  19 IDSTSVEFTPGVTILAGRNATNRTSFLQALMAALGSD-RASlkgdadqgsvtlslddetytreltrspdgvafagdp 94 
                                       6778999999999999999999999999996666644.333567777777666666666666555555555555555 PP

                            AAA_15  55 ..........kkvikiekedleifeniseskdikIdvef...................................... 83 
                                                 + ++ + +   +    ++  +++ ++                                         
  gi|300712816|ref|YP_003738628.1|  95 yleepqladlFAFLLESNPARRAVVRNEDLRELILRPVDveeiearisqlqaekrgidtqlselseasrerdsfeee 171
                                       55555555552222222222222233333333333333333333333333333333333333344444443333332 PP

                            AAA_15  84 .........aekekakeyektlkskekkkadlllkkkesdlkk.tikdkklklkknelsdekisvekkkskkelpke 150
                                                          ++  ++++++ ++  + ++++ ++   +   l + +++l d ++++e +++++   + 
  gi|300712816|ref|YP_003738628.1| 172 yarvtnqleT--------AEADLEEARNSLETAQQSTSDSESTgSDQLDSLRDAQSQLEDTTYDLETEQESVASLEA 240
                                       2222111110........11111111111111111111111110111122223333333444444444444444444 PP

                            AAA_15 151 keeklekekeelk.idkedlkklikkleeslkkeeelknvlksaiikllli 200
                                       ++++le e eel+ id ++l++l +++e++  ++ el++++ ++++ ++++
  gi|300712816|ref|YP_003738628.1| 241 EQSELEAELEELSaIDEDELDDLASQIEQIRGQKRELDEIIAQLQTVIQFN 291
                                       433333333333213344455555544444444444444444444433333 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0058
                            AAA_15 184 e.....................elknvlksaiiklllisakRnvsd.....edsekkssllgklkekileealqekl 234
                                       +                      l++  ++  ++ +l  a+++v++     ++ e k+++l + +e++ ++ l+e+ 
  gi|300712816|ref|YP_003738628.1| 401 AdrtdriselearreellaeteDLESAVEADEDDEDLLAAQKEVTQlelkrDRLERKQNALAEDIESLESQ-LDEQE 476
                                       1444444444444555556565788888888899**********999888888888888888888888665.33333 PP

                            AAA_15 235 .....eeelteklkeiqeklkeidkklaeelkkilkkkidkikkfnykgkkneeieik.........d 288
                                            +ee++ +l+e+ + ++ i+ +  e  + +++  ++ ++++n  + + e+++++         +
  gi|300712816|ref|YP_003738628.1| 477 qlearREEINTELEELRTRIERIEREAIEAFNGHMETVVELLEYGNLARIWLEYRNPNtskdatfelH 544
                                       46777777777777777777777777777777888888888888888888888777776655555550 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   9.0     0.016        14      11      78 ..     155     220 ..     150     234 .. 0.68
   2 ?    3.5  12.0     0.092        82      15      99 ..     212     295 ..     208     299 .. 0.61
   3 ?   11.7  10.8   0.00027      0.24      22     103 ..     352     429 ..     341     431 .. 0.84
   4 ?    3.8  12.0     0.075        67      16      89 ..     439     502 ..     434     519 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.016
                                       HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHH CS
                              OmpH  11 leespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqq 78 
                                       l+e  e+ + ++ +e+++++  ++le+ e++l+++++ l++++++    + e    ++ + l+++q+q
  gi|300712816|ref|YP_003738628.1| 155 LSELSEASRERDSFEEEYARVTNQLETAEADLEEARNSLETAQQST--SDSESTGSDQLDSLRDAQSQ 220
                                       6788999999*****************************9888774..33333333333333332222 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.092
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHH CS
                              OmpH  15 pegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqka..qelqkkqqe 89 
                                       +  ++aq+qle++  +l++e e   ++l+++q el+++ ++l ++ +e el+++  +++q + qk+   e+ ++ q 
  gi|300712816|ref|YP_003738628.1| 212 DSLRDAQSQLEDTTYDLETEQE-SVASLEAEQSELEAELEEL-SAIDEDELDDLASQIEQIRGQKRelDEIIAQLQT 286
                                       6678999999999955555544.5555666666665444554.6667777777777777744444334555555555 PP

                                       HHHHHHHHHH CS
                              OmpH  90 llkpildkin 99 
                                       +++ + ++i+
  gi|300712816|ref|YP_003738628.1| 287 VIQ-FNEQIT 295
                                       555.666665 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00027
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              OmpH  22 eqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildki 98 
                                       ++l +++ ++++el +k +el+++++e+     + e++e e++l++ e+el + +  +  el+++++ell++ ++ +
  gi|300712816|ref|YP_003738628.1| 352 QDLRQEKVERRNELSRKLEELTAQRKEYTSTR-D-ERAELERALETAETELAD-RTDRISELEARREELLAE-TEDL 424
                                       67889999********************7333.3.399***************.88888**********997.6777 PP

                                       HHHHH CS
                              OmpH  99 nkaik 103
                                       + a++
  gi|300712816|ref|YP_003738628.1| 425 ESAVE 429
                                       77765 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.075
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              OmpH  16 egkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqe 89 
                                       ++++  +qle k+ +l+ + +a+++++++l+ +l++ +++   e++++e++++ +el+++ ++ +       +e
  gi|300712816|ref|YP_003738628.1| 439 AAQKEVTQLELKRDRLERKQNALAEDIESLESQLDE-QEQ--LEARREEINTELEELRTRIERIE-------RE 502
                                       566777777777777777777777777777777753.222..44555555555555554333333.......22 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       6.4   5.8e+03     131     169 ..      45      83 ..      35      93 .. 0.72
   2 ?    4.0  16.6     0.029        26     107     250 ..     136     252 ..     103     259 .. 0.46
   3 ?    2.1  26.1      0.11     1e+02     118     238 ..     240     433 ..     232     453 .. 0.63
   4 ?    1.7  19.9      0.15   1.4e+02     118     245 ..     390     512 ..     385     525 .. 0.73
   5 ?    4.9   5.8     0.016        14     113     171 ..     454     511 ..     446     570 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 6.4
                           DUF4407 131 ltaelaeleaqiaalqaeidaaearldalraeaqkeldg 169
                                       l+a +a+l +++a+l++  d+ + +l+   +++++el+ 
  gi|300712816|ref|YP_003738628.1|  45 LQALMAALGSDRASLKGDADQGSVTLSLDDETYTRELTR 83 
                                       677778888888888888888888888888888888776 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.029
                           DUF4407 107 eIdaelaeeqqeeakelkeqlaaa..ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGk 181
                                       eI+a++ + q+e+   +++ql +   ++ e +  e++ a+  +++++aea+l+++r+ ++   + t+ ++ tg   +
  gi|300712816|ref|YP_003738628.1| 136 EIEARISQLQAEKRG-IDTQLSELseASRERDSFEEEYARVTNQLETAEADLEEARNSLETAQQSTSDSESTG-SDQ 210
                                       333333333333321.112211113344444444444444444444444444444444444444333222222.333 PP

                           DUF4407 182 gpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaaddGllarleal 250
                                        ++ + +++ql++ + +l++ +++                            ++ +a+++ l a+le l
  gi|300712816|ref|YP_003738628.1| 211 LDSLRDAQSQLEDTTYDLETEQES---------------------------VASLEAEQSELEAELEEL 252
                                       444444444444444444444333...........................333333333333333333 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.11
                           DUF4407 118 eeakelkeqlaaa...ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk........gtgttgvaGkgp 183
                                       +e++el+++l++     ++el++l +qi++++++ +++++ +++l++  q + + t         +         + 
  gi|300712816|ref|YP_003738628.1| 240 AEQSELEAELEELsaiDEDELDDLASQIEQIRGQKRELDEIIAQLQTVIQFNEQITEdgvtnllgK---------EG 307
                                       334444444444455589999**************************9999988876554444443.........33 PP

                           DUF4407 184 aake..............................................kkaqldaaqaelaelkakld....... 207
                                         ++                                              k +  ++++++l+el+a+++       
  gi|300712816|ref|YP_003738628.1| 308 PSETeadggaitdqlladqsddvtcwtcgsqvgteqiestvsrlqdlrqeKVERRNELSRKLEELTAQRKeytstrd 384
                                       33333555666668999999999999999999777777777776666666444444444444444444444444444 PP

                           DUF4407 208 ..................atarlaalraelaeleaerakeraasqaaaa 238
                                                         +t+r+++l+a+++el ae+++ ++a +a+++
  gi|300712816|ref|YP_003738628.1| 385 eraeleraletaeteladRTDRISELEARREELLAETEDLESAVEADED 433
                                       4445555555555555566666666666666666666666666666444 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.15
                           DUF4407 118 eeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqlda 194
                                       e+a e  e+  a+ t++++elea++++l ae + +e++++a +++ +  + ++  t+ +         ++ +++ +a
  gi|300712816|ref|YP_003738628.1| 390 ERALETAETELADRTDRISELEARREELLAETEDLESAVEADEDDEDLLAAQKEVTQLE------LKRDRLERKQNA 460
                                       44555555555668899999999999999999999999999999999888876665533......344567777777 PP

                           DUF4407 195 aqaelaelkakldatarlaalraelae.leaerakeraasqaaaaaddGlla 245
                                       + +++++l+++ld++++l+a+r+e+++ le+ r+++++  ++a++a++G ++
  gi|300712816|ref|YP_003738628.1| 461 LAEDIESLESQLDEQEQLEARREEINTeLEELRTRIERIEREAIEAFNGHME 512
                                       8888999999999999999999998751555555555556677788887665 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.016
                           DUF4407 113 aeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk 171
                                        e++q++ +e  e+l+++l +e+++lea+++++++e++++++r+++ ++ea +  +g  
  gi|300712816|ref|YP_003738628.1| 454 LERKQNALAEDIESLESQL-DEQEQLEARREEINTELEELRTRIERIEREAIEAFNGHM 511
                                       4555555555556666555.555667777777777777777777777777665555544 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  16.7     0.081        73      43     131 ..     159     251 ..     140     288 .. 0.74
   2 ?    8.5  13.6    0.0013       1.2      52     149 ..     344     441 ..     340     442 .. 0.85
   3 ?    4.9  10.4     0.016        15      60     149 ..     441     530 ..     434     539 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.081
                               GAS  43 ernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlka....rlkelekelkdlkwehevleqrf 115
                                        ++++e +  ++e  r + +L++ae+++ee r+ l++ ++  ++ +++ +     l++++++l+d++++ e  ++ +
  gi|300712816|ref|YP_003738628.1| 159 SEASRERDSFEEEYARVTNQLETAEADLEEARNSLETAQQSTSDSESTGSdqldSLRDAQSQLEDTTYDLETEQESV 235
                                       45566667778888888888888888888888888888887777766654212257778888888888888888888 PP

                               GAS 116 ekvekerdelykkfea 131
                                       +++e+e  el+++ e+
  gi|300712816|ref|YP_003738628.1| 236 ASLEAEQSELEAELEE 251
                                       8888888888877765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
                               GAS  52 isqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykk 128
                                       i++  +rl++  ++  e ++eL ++l++   +++++++++ +  ele+ l++ + e     +r++++e+ r+el ++
  gi|300712816|ref|YP_003738628.1| 344 IESTVSRLQDLRQEKVERRNELSRKLEELTAQRKEYTSTRDERAELERALETAETELADRTDRISELEARREELLAE 420
                                       55555566666677778899********************************************************9 PP

                               GAS 129 feaaiqevqqktglknllLek 149
                                        e+    v  + + + ll  +
  gi|300712816|ref|YP_003738628.1| 421 TEDLESAVEADEDDEDLLAAQ 441
                                       999888887777766666655 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.016
                               GAS  60 kepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqev 136
                                       +++++++e ++++L+++ +   +d +sl+++  + ++le   +++  e e l+ r+e++e+e  e  + + +++ e+
  gi|300712816|ref|YP_003738628.1| 441 QKEVTQLELKRDRLERKQNALAEDIESLESQLDEQEQLEARREEINTELEELRTRIERIEREAIEAFNGHMETVVEL 517
                                       56778888889999999999999999999999999999999999999999999999999999988888888888888 PP

                               GAS 137 qqktglknllLek 149
                                        +  +l  + Le 
  gi|300712816|ref|YP_003738628.1| 518 LEYGNLARIWLEY 530
                                       7777777777775 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  23.9     0.021        19     699     817 ..     143     275 ..     130     297 .. 0.48
   2 ?    6.6  28.4    0.0021       1.9     659     817 ..     347     504 ..     310     514 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.021
                               FPP 699 elksekenlevelksate..........nleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyeslet 765
                                       +l++ek+ ++++l++ +e          +   + +ql+  E  l+e +  Le++++s s  e+    +  s ++ ++
  gi|300712816|ref|YP_003738628.1| 143 QLQAEKRGIDTQLSELSEasrerdsfeeEYARVTNQLETAEADLEEARNSLETAQQSTSDSESTGSDQLDSLRDAQS 219
                                       44444444444443333333333322225555666666777777777777777666666666555555555555555 PP

                               FPP 766 rateleaelnelkqkieaLeveLeeekksheelea....kckelqeqlervekkev 817
                                       ++++ + +l+  ++ + +Le+e +e +   eel a    +  +l  q+e+++ ++ 
  gi|300712816|ref|YP_003738628.1| 220 QLEDTTYDLETEQESVASLEAEQSELEAELEELSAidedELDDLASQIEQIRGQKR 275
                                       55555555555555555554444444444444332111145566666666554333 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0021
                               FPP 659 ecaeisklssekeipselplvsgsneskkeenkllkeeleelksekenlevelksatenleslkaqlqesEqllael 735
                                       +++++++l +e          ++  + k ee   +++e+++ + e+ +le  l++a+ +l     +++e E   +el
  gi|300712816|ref|YP_003738628.1| 347 TVSRLQDLRQE------KVERRNELSRKLEELTAQRKEYTSTRDERAELERALETAETELADRTDRISELEARREEL 417
                                       22222222222......222222233346777888889999999999999999999999988888888888888888 PP

                               FPP 736 ...kseLeslkeskslaetqlkcmkesyesletrateleaelnelkqkieaLeveLeeekks...heeleakckelq 806
                                          +++Les+ e+ +  e+ l  +ke+ + le +   le + n l + ie+Le++L+e+++     ee +++ +el+
  gi|300712816|ref|YP_003738628.1| 418 laeTEDLESAVEADEDDEDLLAAQKEVTQ-LELKRDRLERKQNALAEDIESLESQLDEQEQLearREEINTELEELR 493
                                       33345688888888888888999999987.***************************998862226899999***** PP

                               FPP 807 eqlervekkev 817
                                        ++er+e++  
  gi|300712816|ref|YP_003738628.1| 494 TRIERIEREAI 504
                                       *****997654 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.8    0.0058       5.2      43     104 ..     135     199 ..     130     206 .. 0.76
   2 ?    2.9  11.0      0.14   1.2e+02      39     119 ..     204     285 ..     197     295 .. 0.76
   3 ?    2.3  11.4      0.22     2e+02      50     109 ..     342     404 ..     337     406 .. 0.91
   4 ?   11.0  21.4   0.00043      0.38      36     127 ..     408     500 ..     404     505 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0058
                             THOC7  43 edllldfaafelsie..rlqlla.kanerereryeaekeeieseieavreeieelkaqLeearat 104
                                       e++++++++++ + +   +ql++ +  +rer+++e+e++++ +++e ++++ ee +++Le a++ 
  gi|300712816|ref|YP_003738628.1| 135 EEIEARISQLQAEKRgiDTQLSElSEASRERDSFEEEYARVTNQLETAEADLEEARNSLETAQQS 199
                                       56666666666666655333333033468*********************************985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.14
                             THOC7  39 eqlkedllldfaafelsierlqllakanerereryeaekeeieseieavreei.eelkaqLeearatranrkeydel 114
                                       e++  d l  +   ++++e +   +++ ++ ++++eae++e+e+e+e++ +   +el +  ++  ++r +++e de+
  gi|300712816|ref|YP_003738628.1| 204 ESTGSDQLDSLRDAQSQLEDTTYDLETEQESVASLEAEQSELEAELEELSAIDeDELDDLASQIEQIRGQKRELDEI 280
                                       55555666667777888888888888999999999999999999999999876256666667899999999999999 PP

                             THOC7 115 aekIt 119
                                         +++
  gi|300712816|ref|YP_003738628.1| 281 IAQLQ 285
                                       88776 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.22
                             THOC7  50 aafelsierlqllakanerereryeaekeeie...seieavreeieelkaqLeearatranrk 109
                                       ++ e+++ rlq l +   + r+++ ++ ee+    +e  ++r+e +el+  Le a +++a+r+
  gi|300712816|ref|YP_003738628.1| 342 EQIESTVSRLQDLRQEKVERRNELSRKLEELTaqrKEYTSTRDERAELERALETAETELADRT 404
                                       7899***************9***99999999977788999********************996 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00043
                             THOC7  36 eeleqlkedllldfaafelsie..rlqllakanerereryeaekeeieseieavreeieelkaqLeearatranrke 110
                                       +ele+ +e+ll++ + +e+++e    +  + a ++e+ ++e +++++e++  a+ e+ie+l++qL+e  ++ a+r+e
  gi|300712816|ref|YP_003738628.1| 408 SELEARREELLAETEDLESAVEadEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIESLESQLDEQEQLEARREE 484
                                       688999****************77333444467899***************************************** PP

                             THOC7 111 ydelaekItsnpkpRee 127
                                       ++++ e++ ++  +R e
  gi|300712816|ref|YP_003738628.1| 485 INTELEELRTRI-ERIE 500
                                       ******998876.5555 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2     0.044        40      12      60 ..     133     181 ..     127     201 .. 0.73
   2 ?    0.2   7.6       1.2   1.1e+03      25      53 ..     258     286 ..     206     304 .. 0.62
   3 ?    1.4   0.1       0.5   4.5e+02      27      51 ..     351     376 ..     341     389 .. 0.69
   4 ?    0.6   0.1      0.88   7.9e+02      22      60 ..     392     430 ..     383     440 .. 0.86
   5 ?   10.6   0.9   0.00069      0.61      16      62 ..     454     500 ..     450     503 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.044
                           NPV_P10  12 dikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkven 60 
                                       d+++++ +++ lq++   ++++l +++e + + d+  ++ a + +++e+
  gi|300712816|ref|YP_003738628.1| 133 DVEEIEARISQLQAEKRGIDTQLSELSEASRERDSFEEEYARVTNQLET 181
                                       7888888888888888888888888777777777766666666666554 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
                           NPV_P10  25 qqvddvqenlpdvtelnekLdaqsaqLae 53 
                                       +++dd++++++++   + +Ld++ aqL++
  gi|300712816|ref|YP_003738628.1| 258 DELDDLASQIEQIRGQKRELDEIIAQLQT 286
                                       23444444444444444445555555554 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.5
                           NPV_P10  27 vddv.qenlpdvtelnekLdaqsaqL 51 
                                       ++d+ qe+++  +el+ kL++++aq 
  gi|300712816|ref|YP_003738628.1| 351 LQDLrQEKVERRNELSRKLEELTAQR 376
                                       34441345666679999999999985 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.88
                           NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqLaeletkven 60 
                                       al+++ +++++    ++el+++ +++ a+ ++le++ve+
  gi|300712816|ref|YP_003738628.1| 392 ALETAETELADRTDRISELEARREELLAETEDLESAVEA 430
                                       677777889999999999999999999999999999875 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00069
                           NPV_P10  16 vddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIq 62 
                                       ++ k +al + +++++++l + ++l+++ ++++++L+el t +e I+
  gi|300712816|ref|YP_003738628.1| 454 LERKQNALAEDIESLESQLDEQEQLEARREEINTELEELRTRIERIE 500
                                       6678899*************************************997 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  21.0    0.0093       8.3      51     202 ..     135     290 ..     115     301 .. 0.78
   2 ?    5.6  27.3    0.0046       4.2      37     236 ..     349     495 ..     337     568 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0093
                               MAD  51 qelqkrikllekreeekeealreqiElarlkkknlealnkkekekesklaeare...visalknelaelkrqiekqe 124
                                       +e+++ri++l+ +    +++l+e  E +r +  ++e+  + +++ e+ +a+++e     ++ ++ +++ +    +q 
  gi|300712816|ref|YP_003738628.1| 135 EEIEARISQLQAEKRGIDTQLSELSEASRERDSFEEEYARVTNQLETAEADLEEarnSLETAQQSTSDSESTGSDQL 211
                                       57889999999999999999999999999999988888776666655555555400055556788888888888888 PP

                               MAD 125 lelsekeseleelqerldllkkklseleqliqqlekkqkelae.aeqrikeLefeiqsqeddslivknskselarip 200
                                         l+  +s+le+    l+ +++ ++ le  +++le++ +el++  e+ + +L  +i++   ++ ++ ++ ++l+ + 
  gi|300712816|ref|YP_003738628.1| 212 DSLRDAQSQLEDTTYDLETEQESVASLEAEQSELEAELEELSAiDEDELDDLASQIEQIRGQKRELDEIIAQLQTVI 288
                                       89999999999999999999999999999999999999887663678899999999998888888888877777665 PP

                               MAD 201 el 202
                                       + 
  gi|300712816|ref|YP_003738628.1| 289 QF 290
                                       55 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0046
                               MAD  37 salkrqleeesdrnqelqkrikllekreeekeealreqiElarlkkknlealnkkekekesklaearevisalknel 113
                                       s l++  +e+++r +el +++++l  + +e  ++  e++El+r     le+++ ++ +++++  e++   ++l  e+
  gi|300712816|ref|YP_003738628.1| 349 SRLQDLRQEKVERRNELSRKLEELTAQRKEYTSTRDERAELER----ALETAETELADRTDRISELEARREELLAET 421
                                       3333333344444444444444444444444444444444444....333333333333333333333333333333 PP

                               MAD 114 aelkrqie..kqelelsekeseleelqerldllkkklseleqliqqlekkqkelaeaeqrikeLefeiqsqeddsli 188
                                       ++l+  +e  + + +l + ++e+ +l+ + d l++k + l + i++le++ +e ++ e+r  e++ e+++       
  gi|300712816|ref|YP_003738628.1| 422 EDLESAVEadEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIESLESQLDEQEQLEARREEINTELEE------- 491
                                       3333322200333444444444444444444444444444444444444444444433333333333332....... PP

                               MAD 189 vknskselaripelekelerlreenkklnelkenkelLkEevedlkkk 236
                                                                                   l+++
  gi|300712816|ref|YP_003738628.1| 492 --------------------------------------------LRTR 495
                                       ............................................2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2687  (0.149869); expected 358.6 (0.02)
Passed bias filter:                      841  (0.0469072); expected 358.6 (0.02)
Passed Vit filter:                       235  (0.0131073); expected 17.9 (0.001)
Passed Fwd filter:                       143  (0.0079759); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 2.33u 0.43s 00:00:02.76 Elapsed: 00:00:00.69
# Mc/sec: 2792.38
//
Query:       gi|300712817|ref|YP_003738629.1|  [L=706]
Description: hypothetical protein HacjB3_17478 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-16   58.3   0.0    4.8e-12   45.9   0.1    2.5  2  CCG              Cysteine-rich domain
    3.2e-10   40.0  18.3      7e-09   35.7   9.3    2.7  3  Fer4_10          4Fe-4S dicluster domain
    3.7e-09   36.0  14.0    6.5e-05   22.6   2.3    2.6  2  Fer4             4Fe-4S binding domain
    4.4e-09   36.7   5.7    5.2e-09   36.4   4.0    2.0  1  Fer4_8           4Fe-4S dicluster domain
    5.4e-09   36.1   7.3    8.4e-09   35.5   5.5    2.1  2  Fer4_9           4Fe-4S dicluster domain
    4.4e-07   29.6  11.6    0.00085   19.3   2.0    2.7  2  Fer4_2           4Fe-4S binding domain
    4.2e-06   27.2  24.5      1e-05   26.0  12.9    2.4  2  Fer4_7           4Fe-4S dicluster domain
     0.0004   20.3  24.4    0.00041   20.3   5.0    2.9  3  Fer4_6           4Fe-4S binding domain
     0.0004   20.4  12.8      0.017   15.2   0.5    2.8  3  Fer4_21          4Fe-4S dicluster domain
    0.00077   20.4  12.5      0.019   15.9  13.4    2.5  2  Fer4_16          4Fe-4S double cluster binding domain
    0.00082   19.7  18.1     0.0046   17.4   1.0    2.9  2  Fer4_4           4Fe-4S binding domain
     0.0012   19.0   2.3       0.77   10.0   0.2    2.5  2  Fer4_18          4Fe-4S dicluster domain
     0.0028   18.2  15.7     0.0039   17.7  12.6    2.6  2  Fer4_17          4Fe-4S dicluster domain
      0.003   17.1   3.5     0.0055   16.3   3.5    1.4  1  Nitrate_red_gam  Nitrate reductase gamma subunit
     0.0096   16.8   7.9      0.045   14.6   0.1    2.8  2  Fer4_22          4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.024   15.4   5.7       0.31   11.8   0.5    2.8  2  Fer4_15          4Fe-4S single cluster domain
      0.099   11.6   0.0       0.64    8.9   0.0    2.0  2  DUF3376          Protein of unknown function (DUF3376)
       0.52   10.9  15.9        2.5    8.7   3.8    2.7  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
        3.9    8.6  26.2          1   10.4   6.1    2.9  2  Fer4_3           4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> CCG  Cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00087      0.82      10      83 ..     450     524 ..     440     526 .. 0.90
   2 !   45.9   0.1   5.1e-15   4.8e-12       1      83 [.     586     676 ..     586     678 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00087
                               CCG  10 lraaypevrkalkkllealgveleel.ekesCCGagggrsgkeelaealakrnvetaeetgadaivtacpgCllq 83 
                                        +++++ v ++l++l+  +gv + +l ++e   G+  +r g+e l ++la ++vet+e+   + iv ++p+ +++
  gi|300712817|ref|YP_003738629.1| 450 FDDRNKRVARSLARLFDQAGVSFGILfDDERYDGNDVRRVGEEFLYLELAGHHVETFEDCVFERIVCTDPHSYNT 524
                                       67889******************************************************999****999986666 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 5.1e-15
                               CCG   1 vayfdgChllraa..ypevrkalkkllealgveleel.ekesCCGagggrsgkee.laealakrnvetaee.....t 68 
                                       v+y+d+Chl+r++  y+++r+++++  + ++ e++++ +++ CCG ggg  ++e  +  +  ++++++a e      
  gi|300712817|ref|YP_003738629.1| 586 VTYHDPCHLGRYNdeYEAPRELVRAT-GCELSEMPRNrADSFCCGGGGGGIWMEFdEEPKPSEERLREALEdtaagG 661
                                       89************888888866666.9999**********************996444666666666655444336 PP

                               CCG  69 gadaivtacpgCllq 83 
                                       g+++ v+acp C ++
  gi|300712817|ref|YP_003738629.1| 662 GVEKFVVACPMCMTM 676
                                       8***********987 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   9.3   7.4e-12     7e-09       4      56 .]     295     372 ..     292     372 .. 0.83
   2 !   18.3   1.6     2e-06    0.0019       6      24 ..     358     382 ..     350     409 .. 0.71
   3 ?   -0.8   0.0       1.9   1.8e+03      18      24 ..     669     678 ..     661     696 .. 0.63

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 7.4e-12
                           Fer4_10   4 idddtCirCgkCvkaCPadl........................tsvgakgeaseeeavrk.kvekCtgcgaCveaC 55 
                                       +d+d C++Cg+C ++CPa++                         +++ + ++ + ++++   +e+C++c aC++aC
  gi|300712817|ref|YP_003738629.1| 295 LDQDACTKCGRCSAVCPAKAsgrpldprdvildlkgyraevdagAGNKPIIADGGASVIDSeTMESCMACMACMDAC 371
                                       799****************9*********************9554444444444444444459************** PP

                           Fer4_10  56 P 56 
                                       P
  gi|300712817|ref|YP_003738629.1| 372 P 372
                                       9 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 2e-06
                           Fer4_10   6 ddtCirCgkCvkaCPadl......t 24 
                                        ++C+ C +C++aCP+ +      t
  gi|300712817|ref|YP_003738629.1| 358 MESCMACMACMDACPVEIehlssfT 382
                                       5789999999999999776666652 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.9
                           Fer4_10  18 aCPadl...t 24 
                                       aCP+++   +
  gi|300712817|ref|YP_003738629.1| 669 ACPMCMtmyE 678
                                       7888664431 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   2.3   6.8e-08   6.5e-05       4      22 ..     296     314 ..     294     314 .. 0.93
   2 !   18.0   4.1   1.9e-06    0.0018       6      21 ..     359     374 ..     357     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.8e-08
                                       ETTTSSS-THHHHHSTTTE CS
                              Fer4   4 deekCigCGaCvevCPvgA 22 
                                       d++ C++CG+C  vCP  A
  gi|300712817|ref|YP_003738629.1| 296 DQDACTKCGRCSAVCPAKA 314
                                       99**************987 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.9e-06
                                       TTSSS-THHHHHSTTT CS
                              Fer4   6 ekCigCGaCvevCPvg 21 
                                       e C++C+aC+++CPv+
  gi|300712817|ref|YP_003738629.1| 359 ESCMACMACMDACPVE 374
                                       89************97 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   4.0   5.5e-12   5.2e-09       2      65 .]     297     375 ..     296     375 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 5.5e-12
                            Fer4_8   2 lekCieCgaCqsaCp...vlrrtkkhlldargeaae...dvqeeqvlee..................eealwsCttc 54 
                                        ++C++Cg+C + Cp   +      ++ld+r+   +   +  e     +                   e+++sC++c
  gi|300712817|ref|YP_003738629.1| 297 QDACTKCGRCSAVCPakaS-----GRPLDPRDVILDlkgYRAEV----DagagnkpiiadggasvidSETMESCMAC 364
                                       579***********94431.....23344444433322211111....1122344566666677788999******* PP

                            Fer4_8  55 gaCtevCpvgi 65 
                                       +aC ++Cpv+i
  gi|300712817|ref|YP_003738629.1| 365 MACMDACPVEI 375
                                       ********987 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   5.5   8.9e-12   8.4e-09       1      49 [.     299     374 ..     299     376 .. 0.97
   2 ?   -1.0   0.0       2.3   2.1e+03      10      21 ..     668     679 ..     642     687 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 8.9e-12
                            Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase...........................eaCigCgaCveaCpkg 49 
                                       +Ct+Cg+C ++Cpa++  +   +r + l+ +++                           e+C+ C+aC++aCp +
  gi|300712817|ref|YP_003738629.1| 299 ACTKCGRCSAVCPAKASGRPLDPRDVILDLKGYraevdagagnkpiiadggasvidsetmESCMACMACMDACPVE 374
                                       6***************************99999*****************************************87 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.3
                            Fer4_9  10 eaCpagvvveda 21 
                                        aCp++++++++
  gi|300712817|ref|YP_003738629.1| 668 VACPMCMTMYED 679
                                       456666665555 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   2.0     9e-07   0.00085       5      22 .]     295     312 ..     291     312 .. 0.90
   2 !   14.8   2.3   2.4e-05     0.022       8      21 ..     359     372 ..     352     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9e-07
                            Fer4_2   5 vdtdrCigCgaCvsaCPa 22 
                                        d d+C+ Cg C  +CPa
  gi|300712817|ref|YP_003738629.1| 295 LDQDACTKCGRCSAVCPA 312
                                       799**************8 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.4e-05
                            Fer4_2   8 drCigCgaCvsaCP 21 
                                       ++C++C aC +aCP
  gi|300712817|ref|YP_003738629.1| 359 ESCMACMACMDACP 372
                                       69************ PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.8   1.8e-05     0.017      33      52 .]     295     314 ..     277     314 .. 0.82
   2 !   26.0  12.9   1.1e-08     1e-05       1      51 [.     299     374 ..     299     375 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.8e-05
                            Fer4_7  33 idpekClgCgaCvavCPtga 52 
                                       +d++ C+ Cg+C avCP++a
  gi|300712817|ref|YP_003738629.1| 295 LDQDACTKCGRCSAVCPAKA 314
                                       57889999999999999876 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 1.1e-08
                            Fer4_7   1 rCigCgaCvaaCpvkaield..eeenek........................gtekv.eidpekClgCgaCvavCPt 50 
                                       +C++Cg+C a+Cp+ka   +  ++  +                         g   +    +e+C+ C aC+++CP+
  gi|300712817|ref|YP_003738629.1| 299 ACTKCGRCSAVCPAKASGRPldPR--DVildlkgyraevdagagnkpiiadgGASVIdSETMESCMACMACMDACPV 373
                                       5************99887552222..1133444444444455544444444333444444599*************9 PP

                            Fer4_7  51 g 51 
                                       +
  gi|300712817|ref|YP_003738629.1| 374 E 374
                                       7 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   5.0   4.4e-07   0.00041       5      23 ..     296     314 ..     296     315 .. 0.95
   2 !   10.9   5.0   0.00039      0.37       7      21 ..     359     373 ..     358     376 .. 0.89
   3 ?   -2.3   0.4         6   5.7e+03       8      12 ..     669     673 ..     667     675 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.4e-07
                            Fer4_6   5 dpdkCigCgdCvrvCPega 23 
                                       d+d+C+ Cg+C +vCP++a
  gi|300712817|ref|YP_003738629.1| 296 DQDACTKCGRCSAVCPAKA 314
                                       89**************987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00039
                            Fer4_6   7 dkCigCgdCvrvCPe 21 
                                       ++C  C++C+++CP 
  gi|300712817|ref|YP_003738629.1| 359 ESCMACMACMDACPV 373
                                       78************7 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6
                            Fer4_6   8 kCigC 12 
                                       +C  C
  gi|300712817|ref|YP_003738629.1| 669 ACPMC 673
                                       35555 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.5   1.8e-05     0.017      37      53 ..     296     312 ..     279     315 .. 0.73
   2 !   13.0   1.0   9.2e-05     0.087      37      54 ..     357     374 ..     340     377 .. 0.80
   3 ?   -2.8   0.3       7.7   7.2e+03      42      58 ..     668     675 ..     662     676 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
                           Fer4_21  37 vedeCvGCnlCssvCPv 53 
                                        +d C+ C  Cs+vCP 
  gi|300712817|ref|YP_003738629.1| 296 DQDACTKCGRCSAVCPA 312
                                       47889999999999995 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 9.2e-05
                           Fer4_21  37 vedeCvGCnlCssvCPve 54 
                                       + ++C++C  C++ CPve
  gi|300712817|ref|YP_003738629.1| 357 TMESCMACMACMDACPVE 374
                                       3689************94 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 7.7
                           Fer4_21  42 vGCnlCssvCPvedcie 58 
                                       v+       CP+  c++
  gi|300712817|ref|YP_003738629.1| 668 VA-------CPM--CMT 675
                                       34.......554..444 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  13.4     2e-05     0.019       2      66 ..     300     373 ..     299     374 .. 0.60
   2 !    9.7   2.7    0.0017       1.6       2      16 ..     361     375 ..     360     412 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-05
                           Fer4_16   2 CgtCgkCaevCPtnaikekkekeiearecisy.....ntaekkdlaedeekckkq....eaitgCdiCqdvCPa 66 
                                       C++Cg+C  vCP++a   + +++  + + + y     + a++k ++ d  +  +     e ++ C +C+d+CP+
  gi|300712817|ref|YP_003738629.1| 300 CTKCGRCSAVCPAKASGRPLDPRDVILDLKGYraevdAGAGNKPIIADGGASVIDsetmESCMACMACMDACPV 373
                                       ***************99883222222222222334664444444444443332222222789***********7 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0017
                           Fer4_16   2 CgtCgkCaevCPtna 16 
                                       C  C +C+++CP++ 
  gi|300712817|ref|YP_003738629.1| 361 CMACMACMDACPVEI 375
                                       999*********975 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   3.9   0.00023      0.22       1      16 [.     297     312 ..     297     317 .. 0.93
   2 !   17.4   1.0   4.9e-06    0.0046       2      16 ..     359     373 ..     358     383 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00023
                            Fer4_4   1 qerCigCgsCvaaCPq 16 
                                       q+ C+ Cg+C a+CP 
  gi|300712817|ref|YP_003738629.1| 297 QDACTKCGRCSAVCPA 312
                                       799************6 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 4.9e-06
                            Fer4_4   2 erCigCgsCvaaCPq 16 
                                       e+C  C++C++aCP+
  gi|300712817|ref|YP_003738629.1| 359 ESCMACMACMDACPV 373
                                       89************7 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2    0.0028       2.6      57      74 ..     296     313 ..     272     318 .. 0.82
   2 !   10.0   0.2   0.00082      0.77      55      76 ..     355     376 ..     330     386 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0028
                           Fer4_18  57 gagdcidcescvkvcPtg 74 
                                       ++  c++c+ c +vcP +
  gi|300712817|ref|YP_003738629.1| 296 DQDACTKCGRCSAVCPAK 313
                                       5678************86 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00082
                           Fer4_18  55 ekgagdcidcescvkvcPtgid 76 
                                       ++++  c++c +c++ cP++i+
  gi|300712817|ref|YP_003738629.1| 355 SETMESCMACMACMDACPVEIE 376
                                       5566778888888888887775 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   3.0   0.00036      0.34      44      59 ..     298     313 ..     272     315 .. 0.79
   2 !   17.7  12.6   4.2e-06    0.0039       1      60 [.     299     375 ..     299     376 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00036
                           Fer4_17  44 slCieCgeCerkCPqg 59 
                                       + C++Cg+C+++CP++
  gi|300712817|ref|YP_003738629.1| 298 DACTKCGRCSAVCPAK 313
                                       78***********975 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4.2e-06
                           Fer4_17   1 rCiqCgyClpeCpsyea.ydnepk.......kllraakl.........glleeaekeekaslCieCgeCerkCPqgl 60 
                                       +C++Cg C ++Cp  +  ++ +p+        +++++ +              ++++e++++C+ C  C  +CP ++
  gi|300712817|ref|YP_003738629.1| 299 ACTKCGRCSAVCPAKASgRPLDPRdvildlkGYRAEVDAgagnkpiiaDGGASVIDSETMESCMACMACMDACPVEI 375
                                       6************977765555551222111444444445444444432233367779****************876 PP

>> Nitrate_red_gam  Nitrate reductase gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   3.5   5.8e-06    0.0055      92     204 ..     135     256 ..      80     267 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.8e-06
                   Nitrate_red_gam  92 liagvlalvGlllLllRR..ltnkrvr.aatsasDkvvlllLllqillGllttlvsal....dygseretispwlrs 161
                                        ++g+l++vGl + ++RR  + n+r++  +ts  D +++ +L+l  + G+l+  + ++    + +++++ +  +  +
  gi|300712817|ref|YP_003738629.1| 135 DAFGLLFVVGLGMAMYRRyvVRNERLFgPHTSIEDDAFVWVLFLLGVGGFLVQGIGMVgqeaRAAETVSFVGVFTAT 211
                                       479***************44446666635799999999999999988998888777775543334556777778777 PP

                   Nitrate_red_gam 162 lltlqpd..aellaevplifklHvllglllfalfPFtrLvHvlsa 204
                                       ll       a + +  p+++  H +l+l+ +a +P+++  H+ls 
  gi|300712817|ref|YP_003738629.1| 212 LLEAGGLtpAGAAVIYPIVWWHHSILALVFVAWIPYAKPFHMLSS 256
                                       7764433334444557888899********************995 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.8e-05     0.045      72      95 ..     290     313 ..     272     314 .. 0.88
   2 ?    5.9   0.7     0.024        23      75      96 .]     354     375 ..     344     375 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.8e-05
                           Fer4_22  72 efkekfgesgCvGCgRCieacpvk 95 
                                       ++ke  ++ +C+ CgRC+++cp+k
  gi|300712817|ref|YP_003738629.1| 290 TWKELLDQDACTKCGRCSAVCPAK 313
                                       56777899*************986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.024
                           Fer4_22  75 ekfgesgCvGCgRCieacpvki 96 
                                       ++  +++C+ C  C++acpv+i
  gi|300712817|ref|YP_003738629.1| 354 DSETMESCMACMACMDACPVEI 375
                                       5566788999999999998876 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   0.00033      0.31       3      20 ..     295     312 ..     294     337 .. 0.89
   2 ?    5.2   0.6     0.037        35       6      33 ..     359     382 ..     352     408 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00033
                           Fer4_15   3 vDrdaCigcglCvaeape 20 
                                       +D+daC+ cg+C a++p 
  gi|300712817|ref|YP_003738629.1| 295 LDQDACTKCGRCSAVCPA 312
                                       7***************85 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.037
                           Fer4_15   6 daCigcglCvaeapevfeldedglasvl 33 
                                       + C+ c +C++++p  +e++  +l+s++
  gi|300712817|ref|YP_003738629.1| 359 ESCMACMACMDACP--VEIE--HLSSFT 382
                                       68***********9..4443..444444 PP

>> DUF3376  Protein of unknown function (DUF3376)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.59   5.6e+02     134     169 ..      40      74 ..      30      84 .. 0.81
   2 ?    8.9   0.0   0.00068      0.64     164     270 ..     325     429 ..     321     435 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.59
                           DUF3376 134 ildrleklvlapepidRerlatlreevhaallalra 169
                                       + +rl ++  + ep+ R+rl  ++ +v +a++ +  
  gi|300712817|ref|YP_003738629.1|  40 VYERLARYT-EGEPDPRNRLDGFASRVVNAVRIVGS 74 
                                       667888888.667999************99987655 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00068
                           DUF3376 164 llalranrqpeasagarlepldkdggftvv.rellregelnplakll..gaplaavealadaarellrlldaggada 237
                                       +l+l++ r +e  aga  +p+  dgg  v  +e++    ++ +a ++   a   + e+l+ ++r  ++l d+g+ da
  gi|300712817|ref|YP_003738629.1| 325 ILDLKGYR-AEVDAGAGNKPIIADGGASVIdSETM----ESCMACMAcmDACPVEIEHLSSFTRMNRQLTDQGDVDA 396
                                       56777776.8999***********99999889999....5555555311333334589******************* PP

                           DUF3376 238 Glddltkalatlesvaeeparkdtsvpaglsvg 270
                                        ++d+ + ++   ++  ep rk+ + +  l+++
  gi|300712817|ref|YP_003738629.1| 397 NVQDVFQNVMQKGNTFGEPQRKRADWADDLEFE 429
                                       **********99999999999998888888776 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.8    0.0027       2.5       2      18 ..     296     312 ..     295     313 .. 0.94
   2 ?    7.1   4.3    0.0087       8.2       4      17 ..     359     372 ..     356     375 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0027
                           Fer4_13   2 DrdtCiacgaCvelaPd 18 
                                       D+d C+ cg C +++P 
  gi|300712817|ref|YP_003738629.1| 296 DQDACTKCGRCSAVCPA 312
                                       99**************5 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0087
                           Fer4_13   4 dtCiacgaCvelaP 17 
                                       ++C+ac+aC +++P
  gi|300712817|ref|YP_003738629.1| 359 ESCMACMACMDACP 372
                                       79***********9 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   6.1    0.0011         1       1      15 []     300     314 ..     300     314 .. 0.95
   2 ?    9.2   5.9    0.0027       2.6       1      13 [.     361     373 ..     361     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0011
                            Fer4_3   1 CtgCgaCvevCPvgA 15 
                                       Ct Cg+C  vCP +A
  gi|300712817|ref|YP_003738629.1| 300 CTKCGRCSAVCPAKA 314
                                       ************887 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0027
                            Fer4_3   1 CtgCgaCvevCPv 13 
                                       C+ C+aC+++CPv
  gi|300712817|ref|YP_003738629.1| 361 CMACMACMDACPV 373
                                       988*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4836.05
//
Query:       gi|300712818|ref|YP_003738630.1|  [L=317]
Description: electron transfer flavoprotein alpha subunit [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-37  125.4   0.2    2.2e-36  123.7   0.2    1.9  1  ETF_alpha  Electron transfer flavoprotein FAD-binding domain
    2.2e-25   89.6   0.3    3.7e-25   88.9   0.3    1.4  1  ETF        Electron transfer flavoprotein domain
  ------ inclusion threshold ------
       0.66    9.9   3.3        7.6    6.5   0.1    3.1  3  DUF1949    Domain of unknown function (DUF1949)


Domain annotation for each model (and alignments):
>> ETF_alpha  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.2   3.7e-40   2.2e-36       1      84 []     196     279 ..     196     279 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 3.7e-40
                                       .-TTT-S-EEEE-GGGSSGGGHHHHHHHHHHHT-EEEE-HHHHTTTSS-CCCB-SSSS-----S-EEEES----HHH CS
                         ETF_alpha   1 vdLeeakvvvsgGrGlkskenlelleelaealgaavgasRavvdagwipeerqvGqtGktvaPklyiavGisGaiqh 77 
                                       vd+++a+v+vs+GrG+++++n+el+eela+al+a+++ sR++vd+gw+p++rqvGq+Gktv+P++yia+GisGa+qh
  gi|300712818|ref|YP_003738630.1| 196 VDISDAEVLVSVGRGIEEEANIELIEELADALDATLSSSRPIVDNGWLPKNRQVGQSGKTVTPEVYIAIGISGAVQH 272
                                       699************************************************************************** PP

                                       HGGGTT- CS
                         ETF_alpha  78 laGmkes 84 
                                       +aGmk s
  gi|300712818|ref|YP_003738630.1| 273 VAGMKGS 279
                                       ****987 PP

>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.3   6.1e-29   3.7e-25       1     159 [.       4     156 ..       4     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 6.1e-29
                                       EEEEE-EC.CCCE-HHHHHHHHHHHHHHHHHT--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS--CCHH CS
                               ETF   1 vlvlaehgvdgklnpvdlealeaArrlkekaggevtavvvGppeaeealrealaamGadkvilvddpalagydaeat 77 
                                       vl +aeh+ +g+l++v+ e+++a+r+l++ + ge++  v+    ++e  +++l+  G+d v+ v      +++++ +
  gi|300712818|ref|YP_003738630.1|   4 VLAIAEHR-RGELRDVSDELISAGRELADDLSGELHIAVISG--QVEEFARTLSREGVDVVHTVAA--GSEFNHDIY 75 
                                       6899***9.********************9778887777766..3555899***9****8888855..45679999* PP

                                       HHHHHHHHHHC--SEEEEESSCCHHHHHHHHHHHCT-EEEEEESEEEEETCCEEEEEECCCCTEEEEEE-TSSSEEE CS
                               ETF  78 akalaalikkedpdlvlagataigkqvaprlAalLgvplitdvteleveggkltvtRpieggnglaevveadlpavl 154
                                       ++a+  l +++dp++vl++++  g +++p +A +L+ pl+tdv++   e ++ ++tR+++g ++ ++v+  +  + +
  gi|300712818|ref|YP_003738630.1|  76 VQAVERLTAELDPSVVLMPNSVNGLDYGPAVANRLDRPLVTDVVGASFE-DGFVATREMYGSKVETTVEVDAERVTV 151
                                       *************************************************.77************9555544554445 PP

                                       EE-TT CS
                               ETF 155 tvrpg 159
                                        +r g
  gi|300712818|ref|YP_003738630.1| 152 MIRGG 156
                                       55555 PP

>> DUF1949  Domain of unknown function (DUF1949)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.018   1.1e+02      32      50 ..      36      54 ..      36      55 .. 0.91
   2 ?    6.5   0.1    0.0013       7.6      24      43 ..     131     150 ..     124     154 .. 0.83
   3 ?   -2.2   0.2      0.66     4e+03      36      52 ..     218     226 ..     211     232 .. 0.51

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.018
                           DUF1949 32 tltlavpeeeveafkaaLt 50
                                      +l++av  ++ve+f ++L+
  gi|300712818|ref|YP_003738630.1| 36 ELHIAVISGQVEEFARTLS 54
                                      699************9985 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0013
                           DUF1949  24 dteYtddVtltlavpeeeve 43 
                                        + Y+ +V+ t++v++e+v 
  gi|300712818|ref|YP_003738630.1| 131 REMYGSKVETTVEVDAERVT 150
                                       677*************9986 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.66
                           DUF1949  36 avpeeeveafkaaLtdl 52 
                                       +        ++++L+d+
  gi|300712818|ref|YP_003738630.1| 218 E--------LIEELADA 226
                                       4........44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2328.68
//
Query:       gi|300712819|ref|YP_003738631.1|  [L=258]
Description: Electron transfer flavoprotein alpha/beta-subunit [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-39  135.0   3.6    3.4e-39  134.6   3.6    1.2  1  ETF            Electron transfer flavoprotein domain
  ------ inclusion threshold ------
       0.16   12.5   0.7       0.32   11.5   0.3    1.7  2  CoA_binding_2  CoA binding domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   3.6   3.8e-43   3.4e-39       3     181 ..      23     208 ..      21     209 .. 0.96

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 3.8e-43
                                       EEE-EC.CCCE-HHHHHHHHHHHHHHHH.HT--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS-.-CCHH CS
                               ETF   3 vlaehgvdgklnpvdlealeaArrlkek.aggevtavvvGppeaeealrealaamGadkvilvddpalagy.daeat 77 
                                        ++e+  ++ ln++d +a+e+A+rl e+ +  ev+ v++Gp++ ee++r ala +Gad++i v+d++l++  d  a 
  gi|300712819|ref|YP_003738631.1|  23 AIDERYLEYDLNEWDDYAIEEAVRLTEEgLADEVVTVTIGPERVEETIRMALA-KGADRAIRVWDSSLEELlDVAAK 98 
                                       5889999*********************6449*********************.***************998999** PP

                                       HHHHHHHHHHC--SEEEEESSCC.H..HHHHHHHHHHCT-EEEEEESEEEEETCCEEEEEECCCCTEEEEEE-TSSS CS
                               ETF  78 akalaalikkedpdlvlagatai.g..kqvaprlAalLgvplitdvteleveggkltvtRpieggnglaevveadlp 151
                                       +++l+a++++e+pdl+l+g ++     + ++  lAa  ++++++ v +le +g++  v+R++eg  g++e + +++p
  gi|300712819|ref|YP_003738631.1|  99 TEILRAVVAEEKPDLILTGVQTGdAmfGATGVSLAAAVDYSWAAVVNDLEFDGETTSVHRELEG--GVEELTDVETP 173
                                       ***********************55***************************************..**9******** PP

                                       EEEEE-TTSS--.....--S-TT---EEEE--HHH CS
                               ETF 152 avltvrpgafep.....aaimaakkkeveevevad 181
                                       avlt+++g++ep     ++i++a++ke+ + ++ad
  gi|300712819|ref|YP_003738631.1| 174 AVLTIQTGINEPryaslRGIRQAQSKEIAVEDLAD 208
                                       ******************************99998 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   3.6e-05      0.32      57     103 ..      25     101 ..       3     109 .. 0.75
   2 ?   -2.4   0.0      0.75   6.7e+03      73      93 ..     165     186 ..     159     207 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.6e-05
                                       -..............................EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT---HHHHHHHHHTT- CS
                     CoA_binding_2  57 d..............................lvdvftppeatpeivkealalgakavwlqpgsedeeaaelaeeagi 103
                                       d                              +v+v + pe+++e+++ ala+ga +++    s  ee++++a++ +i
  gi|300712819|ref|YP_003738631.1|  25 DeryleydlnewddyaieeavrlteegladeVVTVTIGPERVEETIRMALAKGADRAIRVWDSSLEELLDVAAKTEI 101
                                       1555555555555666666666777777777***************************9999999999999998765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.75
                                       HHHHHH-.-SEEEE-TT---HH CS
                     CoA_binding_2  73 kealalg.akavwlqpgsedee 93 
                                       +e+ +++ ++++ +q g+ ++ 
  gi|300712819|ref|YP_003738631.1| 165 EELTDVEtPAVLTIQTGINEPR 186
                                       5555554245555566533332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1772.36
//
Query:       gi|300712820|ref|YP_003738632.1|  [L=246]
Description: Enoyl-CoA hydratase/isomerase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-28   98.2   0.0      5e-28   98.1   0.0    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
    1.5e-15   57.5   0.1    2.2e-15   57.0   0.1    1.1  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   5.6e-32     5e-28      54     250 ..      50     245 ..       9     246 .] 0.89

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 5.6e-32
                                       EEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS CS
                             ECH_1  54 aaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaaigGGlelalacDiviaadnasfglnelklGl 130
                                        aG  l ++   ++ ++ ++   +    +++++++ +++     +a+g+Glela+ cD+++a  +a+ gl+e+++Gl
  gi|300712820|ref|YP_003738632.1|  50 TAGIPLDKVKDLSTTEARQMLMGLHRMIDAVRNLDAVTVCCCGEYALGAGLELAMSCDFRVATAEAKLGLPEINIGL 126
                                       567777777777667777777788889999*********************************************** PP

                                       --CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHH CS
                             ECH_1 131 ipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalrqlkealna 207
                                       + g  g + l+r vG +kA+e++++gk is+ ea+++Gl++ +v+  + +    +l+ +laeksp+++++ +  ++ 
  gi|300712820|ref|YP_003738632.1| 127 VTGIQG-NLLVRLVGLQKAKELVYTGKVISGTEAENIGLINVAVSPGNYEASIDALVGRLAEKSPLIIQMQTRVFRG 202
                                       **6666.6899***********************************************************9999998 PP

                                       HHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
                             ECH_1 208 kledalaeqleaeaklfestfskddikeGlqaflEkrkpefed 250
                                         ++  + +++a  +   + f+++d  e ++aflE r+p+f +
  gi|300712820|ref|YP_003738632.1| 203 LRSNGIESGIDASLETIAACFDTHDQTEAMDAFLESRDPSFVG 245
                                       8889999******************9*************9975 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.1   2.4e-19   2.2e-15      11     239 ..      10     236 ..       3     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.4e-19
                                       GTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEES...SSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHH CS
                             ECH_2  11 alNaLslemvralkealkewekddevklvvlkga...gekafCAGgDvralyeaakegkkeeeeffreeYklnylia 84 
                                       +lN   ++ + +++e+++++    +v+++v++g+   g+ ++ AG  + ++ +  +++++   ++    +++  ++ 
  gi|300712820|ref|YP_003738632.1|  10 ELNLFGTDTIATIREKIEAV--PVNVSVLVIRGTdddGKGGLTAGIPLDKVKDLSTTEAR---QMLMGLHRMIDAVR 81 
                                       68888888999999999997..4578888888863335669***********99999764...59************ PP

                                       C-SS-EEEEE-BEEETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSSTTHHHHHHHH---B-HHH CS
                             ECH_2  85 typkpvvalmdGivmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpgelGlylalTGarlkgad 161
                                       ++   +v+ +  +++G G+ l++++ frv+t ++++  PE++IGl++ + g  +   +  + ++ l  TG+ ++g++
  gi|300712820|ref|YP_003738632.1|  82 NLDAVTVCCCGEYALGAGLELAMSCDFRVATAEAKLGLPEINIGLVTGIQGNLLVRLVGLQKAKELVYTGKVISGTE 158
                                       *************************************************99977766677***************** PP

                                       HHHTTS--EE--GGGHHHHHHHHHTT........--------......----SHHHHHHHHHHHT.-S-TTTHHHHH CS
                             ECH_2 162 alaaglathyvpseklealeeaLaelessdeeaveevleelaeeaeeeeeeselaekreaidrlfsadsveeiveaL 238
                                       a ++gl +  v+  + ea  +aL     +++  + ++ +++ +  +++  es + ++ e+i+++f++++ +e ++a 
  gi|300712820|ref|YP_003738632.1| 159 AENIGLINVAVSPGNYEASIDALVGRLAEKSPLIIQMQTRVFRGLRSNGIESGIDASLETIAACFDTHDQTEAMDAF 235
                                       ***********98888777777776555554444444444444444444478899999*******888666666554 PP

                                       H CS
                             ECH_2 239 e 239
                                        
  gi|300712820|ref|YP_003738632.1| 236 L 236
                                       3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1802.47
//
Query:       gi|300712821|ref|YP_003738633.1|  [L=197]
Description: flavin reductase domain protein FMN-binding protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-22   80.3   0.1    1.9e-22   80.0   0.1    1.1  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.1   1.1e-26   1.9e-22       4     138 ..      23     162 ..      20     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.1e-26
                                       S-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEE.....TTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTC CS
                     Flavin_Reduct   4 vaqpvavvttsvpptsplgatlssftslsldPplvafslr.....lpsstadalkeagefvinllsesqealadafs 75 
                                       +++p+ +++t+ +++ ++ a++s    +s d p+v+fs +     +p++ta +++++gefv+n++ e  ++ +d++s
  gi|300712821|ref|YP_003738633.1|  23 TPRPIGWISTTSADGVDNLAPFSCYNYISSDYPVVMFSSKvkqggKPKDTAWNVANTGEFVVNVVTERLAEQMDQTS 99 
                                       589*******999999999*********************99*********************************** PP

                                       S...SCCCCCCCCCCCEEECT.CCCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTT CS
                     Flavin_Reduct  76 qksgprtddksifagltwees.ptgapallgalasleCqvvgsvelgdhelfigeVvavkvgdd 138
                                       +  +  ++++++fa l+  +s  +++p++++al+sleC+ ++s+++ d  +f geV+ ++++d+
  gi|300712821|ref|YP_003738633.1| 100 AELP-ADESEFDFARLERADStHVTPPRVADALISLECTNIESLDIHDRAVFFGEVETFHIDDE 162
                                       *998.*********999999989999**********************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1532.27
//
Query:       gi|300712822|ref|YP_003738634.1|  [L=69]
Description: hypothetical protein HacjB3_17503 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 564.75
//
Query:       gi|300712823|ref|YP_003738635.1|  [L=258]
Description: hypothetical protein HacjB3_17508 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-09   35.9   0.0    8.3e-09   35.4   0.0    1.2  1  Polysacc_deac_1  Polysaccharide deacetylase
    1.4e-06   28.1   0.0    2.1e-06   27.6   0.0    1.3  1  DUF2334          Uncharacterized protein conserved in bacteri
    6.1e-05   22.4   0.0    7.3e-05   22.1   0.0    1.1  1  Glyco_hydro_57   Glycosyl hydrolase family 57
  ------ inclusion threshold ------
       0.13   10.9   0.0       0.18   10.5   0.0    1.1  1  DUF5059          Domain of unknown function (DUF5059)


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.8e-12   8.3e-09      22     122 ..      52     155 ..      36     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.8e-12
                                       HHHHHHHHHCT--EEEEE-HHHHCH-...HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS CS
                   Polysacc_deac_1  22 teilpvLkkykvkatffvigglvedy...pdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalg 95 
                                       + ++++L k +v a + +  ++ e+     d +r++++ G+e+  H++ h+ + +   e++++e+      + + lg
  gi|300712823|ref|YP_003738635.1|  52 DWLVDALVKAGVSAGVSIPASHLETDktvRDGIRRLVNTGNEVVVHGYRHTSYMETPYETANAELTAIISCFDSRLG 128
                                       5577888888888888887777433344599********************************************** PP

                                       ----EEE-GGGEE-HHHHHHHHHTT.E CS
                   Polysacc_deac_1  96 reprlfryPygsasatvlevarelgfa 122
                                        +p  f  P+ + s+ ++++a+e+g++
  gi|300712823|ref|YP_003738635.1| 129 VQPAGFHVPFMRCSRGTVQAAEEHGIE 155
                                       *************************86 PP

>> DUF2334  Uncharacterized protein conserved in bacteria (DUF2334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   4.7e-10   2.1e-06      50     146 ..      73     160 ..      66     229 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 4.7e-10
                           DUF2334  50 nlsenpefvevLkylqakGgeialHGYtHqygtvksevsgegfeflseseakeriekGieilk.klgikpkgFeaPh 125
                                       +l+ ++ + + +++l + G e+++HGY H++        +  +e      a++ +++ i  ++ +lg++p gF +P 
  gi|300712823|ref|YP_003738635.1|  73 HLETDKTVRDGIRRLVNTGNEVVVHGYRHTSY------METPYET-----ANAELTAIISCFDsRLGVQPAGFHVPF 138
                                       67889999999********************8......3456666.....9***********62689********** PP

                           DUF2334 126 yaaseetykalkky.fsiiyer 146
                                          s+ t +a++++ ++ i+ +
  gi|300712823|ref|YP_003738635.1| 139 MRCSRGTVQAAEEHgIEWIVGT 160
                                       **************99999966 PP

>> Glyco_hydro_57  Glycosyl hydrolase family 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.6e-08   7.3e-05     109     203 ..      52     165 ..      16     188 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.6e-08
                                       H...................HHHHT.TT-HHHHHHHHHHCTSEEEEEE-TT-B-GGG-S-HHHHHHHHHHHHHHHHH CS
                    Glyco_hydro_57 109 e...................qiqkwlnkevlelfrelqesgqvElltspyyHpllpllpdsedieaqvkkarelyee 166
                                                           ++ +  +k v + +r l+ +g+ E+++ +y H      p+ e   a++   ++++ +
  gi|300712823|ref|YP_003738635.1|  52 DwlvdalvkagvsagvsipaSHLET-DKTVRDGIRRLVNTGN-EVVVHGYRHTSYMETPY-ETANAELTAIISCFDS 125
                                       3444444455555555555555566.78899999******99.*********87777777.**************** PP

                                       HHSS--SBEE-GGG-B--SHHHHHHHTT--EEEE-C...- CS
                    Glyco_hydro_57 167 yfgqePrgfwlpElavspeileilaelGfeylftde...l 203
                                        +g++P gf  p +  s  ++++ +e G+e+++  e   +
  gi|300712823|ref|YP_003738635.1| 126 RLGVQPAGFHVPFMRCSRGTVQAAEEHGIEWIVGTEpsdV 165
                                       ********************************98775553 PP

>> DUF5059  Domain of unknown function (DUF5059)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.9e-05      0.18     287     340 ..      40      96 ..      34     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.9e-05
                           DUF5059 287 dedaYegfegGleaLaea.iengdaegvadave..tvDenlvaGieaLaggeaaavl 340
                                       ++ aY+ fe+G++ L +a +++g ++gv+   +  + D+ ++ Gi+ L+   + +v+
  gi|300712823|ref|YP_003738635.1|  40 EHVAYDIFEDGIDWLVDAlVKAGVSAGVSIPAShlETDKTVRDGIRRLVNTGNEVVV 96 
                                       688************9995689999999865551146999******99865555454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2160.43
//
Query:       gi|300712824|ref|YP_003738636.1|  [L=316]
Description: putative citrate lyase beta chain [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-33  114.3   0.1    9.6e-33  113.2   0.0    1.5  2  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family
    7.9e-10   38.4   0.0    0.00085   18.6   0.0    2.1  2  C-C_Bond_Lyase   C-C_Bond_Lyase of the TIM-Barrel fold
    5.3e-05   22.8   0.3       0.15   11.4   0.1    2.4  2  AP_endonuc_2     Xylose isomerase-like TIM barrel
    8.5e-05   21.0   0.0      0.013   13.8   0.0    2.4  3  Malate_synthase  Malate synthase


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   2.1e-36   9.6e-33       1     221 []       5     234 ..       5     234 .. 0.93
   2 ?   -1.8   0.0      0.31   1.4e+03      85     129 ..     240     287 ..     238     295 .. 0.69

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 2.1e-36
                                       EEEEEEESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SST...THHHH CS
                         HpcH_HpaI   1 riglflpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsl...dseli 74 
                                       r++lf+pg++++ + +a   +aD++++DlEd+v   eK+aAR++v++ l +l a +   + v VRvn++   +++++
  gi|300712824|ref|YP_003738636.1|   5 RSVLFIPGNRESWVANAHENDADVIILDLEDSVPPDEKEAARKTVAKYLPKLHA-KG--QRVHVRVNAHpnaSKGFA 78 
                                       899***************************************************.54..48*****975333899** PP

                                       HHHGG.HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH.TSTTEEEEEE CS
                         HpcH_HpaI  75 kqdle.vldlgaqvvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIa.avegldgvfl 149
                                       ++d e ++ +++++v vPkv+ +++++ ++++l  +e+ ++  ++ + l + iE+a+++ ++ +   a++++  +  
  gi|300712824|ref|YP_003738636.1|  79 EHDFEaIACEQLEAVTVPKVQEPNDIERLDTVLTHIERREGLPVGGIELTVSIETAQAMRQVYDLCeAADRVGTIGC 155
                                       *****999**********************************************************999*9999998 PP

                                       -H...HHHHHHTT-TTSTTSHHHH...HHHHHHHHTTHCEEEEE.EE.E-SSHHHHHHHHHTTHCEEEEEEHHHHHH CS
                         HpcH_HpaI 150 Ga...eDlsadlgtkrspegtevl...dareriltaaraagiaa.ldtvasdiddaegflaegalfvalGfdgklli 219
                                       Ga    D  ++lg +++  g e l   + re+ l  araa+i+  l + ++d+dd eg++++ ++  ++G++g l+i
  gi|300712824|ref|YP_003738636.1| 156 GAvkgTDTNRALGFEWTGPGREGLetlHLREQALMDARAAEIEFpLAGTYIDVDDIEGLRKDMQFSQEMGYTGYLVI 232
                                       875557**********97666555555***************866999***************************** PP

                                       HH CS
                         HpcH_HpaI 220 np 221
                                       +p
  gi|300712824|ref|YP_003738636.1| 233 HP 234
                                       *8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.31
                                       SSEEEESS--SHHHHHHHHHHTSHTTTS---...HCCC-EEEEEE-SH CS
                         HpcH_HpaI  85 aqvvlvPkvetaeealevvsalrepekgirg...anketrllaqiEsa 129
                                       a+ + +P +et e  + + + l e+e++ ++   +++ +  +a iE+a
  gi|300712824|ref|YP_003738636.1| 240 ANEIFLPDTETIEYWVGAMETLLEAENEGKSavrYEGDMIDIANIETA 287
                                       677889999998887766666666665444446666666667788887 PP

>> C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.9e-07   0.00085      10     123 ..       7     112 ..       6     153 .. 0.70
   2 !   17.8   0.0   3.2e-07    0.0014     214     318 ..     168     283 ..     161     298 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.9e-07
                    C-C_Bond_Lyase  10 tLYmPatrediaekilkqklegltslvlclEDavseeeveaAeenlkellkelaeaekekekeelpllFvRvR.spe 85 
                                        L++P++re+ +++    + +++  ++l+lED+v  +e eaA +++++ l +l+++         + + vRv  +p+
  gi|300712824|ref|YP_003738636.1|   7 VLFIPGNRESWVAN---AHENDADVIILDLEDSVPPDEKEAARKTVAKYLPKLHAKG--------QRVHVRVNaHPN 72 
                                       68999999776555...555677889***************************9953........457788862455 PP

                    C-C_Bond_Lyase  86 qlkellerlge..alelltGfvlPkftsesleeylealkk 123
                                         k ++e+  e  a+e l+ + +Pk+++ +  e l+++ +
  gi|300712824|ref|YP_003738636.1|  73 ASKGFAEHDFEaiACEQLEAVTVPKVQEPNDIERLDTVLT 112
                                       5566666654424677899999999988777666665544 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.2e-07
                    C-C_Bond_Lyase 214 gfvisgpVweyfdkkerqlrkspfeeke.........reellekdldglirEvalDkanGlvGKtvIhPsqialvqa 281
                                       gf  +gp  e +++ +  lr++++ +++          + +  +d++gl + ++  ++ G +G  vIhPs+++  ++
  gi|300712824|ref|YP_003738636.1| 168 GFEWTGPGREGLETLH--LREQALMDARaaeiefplaGTYIDVDDIEGLRKDMQFSQEMGYTGYLVIHPSHVEHANE 242
                                       6777777777777766..6666666665566777774333445899******************************* PP

                    C-C_Bond_Lyase 282 llvVskeeye...dAldiles.akggvfkseyankmnEvkp 318
                                       ++   +e  e    A++ l + +++g  +++y++ m++++ 
  gi|300712824|ref|YP_003738636.1| 243 IFLPDTETIEywvGAMETLLEaENEGKSAVRYEGDMIDIAN 283
                                       99877766542224665544426679999999999998764 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   3.4e-05      0.15      74     141 ..      16      81 ..      13      98 .. 0.87
   2 !    9.1   0.0   0.00017      0.78      47     126 ..     197     304 ..     187     306 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.4e-05
                                       HHHHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC CS
                      AP_endonuc_2  74 raielaaaLGapllvlhpGtagagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd 141
                                       +++  a++ +a++++l     ++ p++++e+a++++a+ l +l ++++++ v++ +++ a++g    d
  gi|300712824|ref|YP_003738636.1|  16 SWVANAHENDADVIILDLE--DSVPPDEKEAARKTVAKYLPKLHAKGQRVHVRVNAHPNASKGFAEHD 81 
                                       688899999********77..9************************************9999965554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00017
                                       EEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHT.BSEEEEEBCC............................. CS
                      AP_endonuc_2  47 lslftrfgypdederearreesvdalkraielaaaLG.apllvlhpGt............................. 93 
                                       ++++   +y d+d    +    ++ l++ +++++++G + +lv+hp++                             
  gi|300712824|ref|YP_003738636.1| 197 IEFPLAGTYIDVD----D----IEGLRKDMQFSQEMGyTGYLVIHPSHvehaneiflpdtetieywvgametlleae 265
                                       5666666666665....7....9**************999*******999999998888888888888888888888 PP

                                       .....GBCTTTSGHH.HHHHHHHHHHHHHHHHHHHHTSE CS
                      AP_endonuc_2  94 .....agagpkgsee.eawerlaeslneladyaekegvk 126
                                            a +++++ ++ +++e++++ ++ + ++a++ +v+
  gi|300712824|ref|YP_003738636.1| 266 negksAVRYEGDMIDiANIETARRYIEYAEAFADDLNVE 304
                                       888776677777777888888888888888888877775 PP

>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0017       7.7      92     121 ..      16      45 ..       5      71 .. 0.80
   2 !   13.8   0.0   2.8e-06     0.013     208     272 ..      94     157 ..      77     161 .. 0.93
   3 ?   -3.1   0.0      0.39   1.8e+03     343     376 ..     211     244 ..     180     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0017
                                       CHCCCCCCCSSSEEEEESSTTS--HHHHHH CS
                   Malate_synthase  92 kmiinalnesaittiaDfEDsvapnwenlv 121
                                         + na  ++a + i+D EDsv p+ ++  
  gi|300712824|ref|YP_003738636.1|  16 SWVANAHENDADVIILDLEDSVPPDEKEAA 45 
                                       56899999**************99765554 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.8e-06
                                       EE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-C CS
                   Malate_synthase 208 vlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGr 272
                                         PK+++p++++    v + +e   glp g i  tv iEt +a  ++ + + e++drv  + cG 
  gi|300712824|ref|YP_003738636.1|  94 TVPKVQEPNDIERLDTVLTHIERREGLPVGGIELTVSIETAQAMRQVYD-LCEAADRVGTIGCGA 157
                                       67*****************************************999987.7899*********96 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.39
                                       HHHHHHHCHHHHHCT-SEEEESSHHHHHHHHHHH CS
                   Malate_synthase 343 lekvredKlrevraGadgaWvahPtlatlaaevf 376
                                       +e +r+d +   + G +g  v hP+ ++ a+e+f
  gi|300712824|ref|YP_003738636.1| 211 IEGLRKDMQFSQEMGYTGYLVIHPSHVEHANEIF 244
                                       5667777777778899999999999998888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2555.40
//
Query:       gi|300712825|ref|YP_003738637.1|  [L=327]
Description: luciferase-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-51  173.3   0.0      1e-50  173.0   0.0    1.0  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.0   0.0   5.8e-55     1e-50      10     305 ..       5     284 ..       1     291 [. 0.87

  Alignments for each domain:
  == domain 1  score: 173.0 bits;  conditional E-value: 5.8e-55
                    Bac_luciferase  10 rqggalgaasaslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaa.aTerirlgtavtplytrhPav 85 
                                       ++++++  ++  +++l+e+ar aE+ Gf +++v+ehh+ ++  +d f++la +a+   + + +gt+v+ l++++Pa+
  gi|300712825|ref|YP_003738637.1|   5 QHPADRDPKT-CFAELLEQARIAEASGFKGLFVGEHHFTDDIYFDNFQTLARMAGeLGNEMNIGTSVCLLPLHNPAL 80 
                                       5555555555.89*************************99999********8876169******************* PP

                    Bac_luciferase  86 lAqqaatLdhlsgGRfglglgtggpaveerrfGvdhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprp 162
                                       +A+ +atLd +s+G +++g  +g + +e++  Gvd++er  r  E +e++r+lw+++ v+++G+++  ++++++p+p
  gi|300712825|ref|YP_003738637.1|  81 VAERIATLDVISNGNVVFGAAAGYRDAEFDTVGVDKAERAGRITEGIEIIRALWSKNNVSYDGDYYVFENVTTRPQP 157
                                       ******************************************************99999******999********* PP

                    Bac_luciferase 163 gqgpiP.vyvaaaspaglelaarhadglllag.eppeeaaelierlragaaeagrdpadirvgisltvivadteeeA 237
                                        q+ +P ++++++ pa+++ aa+++d++l+ + +p  ++++++  ++    e  +  ++    i++ v+va+t eeA
  gi|300712825|ref|YP_003738637.1| 158 IQESRPpIWLGGSAPAAVKRAAEIGDAWLIDPvSPVSKLKKAVGLYER---ELTE--EPTCRPIRRDVYVAETTEEA 229
                                       **99555****************************************7...5555..3445556************* PP

                    Bac_luciferase 238 raearaliagldfyaldsegagreaeaaeiqeeedanlwagaadavpdelvaatalvGtpeqvaerla 305
                                        + a+ +i          ++++++     i+++    +++++++ v     ++ +l+Gtpe va +l+
  gi|300712825|ref|YP_003738637.1| 230 IDIAAPYI-----LDKFDSLSEWG----IIDDDAEELSRRERFERV----SEGRYLIGTPEKVAGELE 284
                                       ********.....33344444444....666666666666666664....7888**********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2405.10
//
Query:       gi|300712826|ref|YP_003738638.1|  [L=309]
Description: hypothetical protein HacjB3_17523 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0022   17.8   0.1     0.0059   16.4   0.0    1.8  2  Amidohydro_2  Amidohydrolase
  ------ inclusion threshold ------
      0.069   13.2   0.2       0.15   12.1   0.2    1.5  1  VCH_CASS14    Integron cassette protein VCH_CASS1 chain


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.15   1.4e+03       4     111 ..      25      51 ..      22      70 .. 0.51
   2 !   16.4   0.0   6.6e-07    0.0059     209     290 ..     209     307 ..     140     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.15
                                       EEEE..SHHHCCCCCCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHHHHHHHHHHHHHHHHHHHHHH CS
                      Amidohydro_2   4 HaHllppeaairddgepngfdpeerlafmkragvdpqlaspeallvlnaaagiaravivaalcrgannrvlaeaakr 80 
                                       H+H           + p+ +d   ++ +++                                               
  gi|300712826|ref|YP_003738638.1|  25 HVH-----------AGPDVTDRKHDIVELA----------------------------------------------- 43 
                                       555...........3444444444444444............................................... PP

                                       CTTCBECEEECTSSHCHHHHHHHHHHHHTTE CS
                      Amidohydro_2  81 pdrfvggaavvpldpedaaaeleraveelgf 111
                                                              r+++++g 
  gi|300712826|ref|YP_003738638.1|  44 -----------------------RRAADAGM 51 
                                       .......................44444444 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.6e-07
                                       CCEEECCGHHH..............SSEEECCHHCHHHHHHHHHHH-GGGEEEE--BTSTTSTSCTTHHHHCHHHHH CS
                      Amidohydro_2 209 vyvklsglyte..............llyfdspladppalarlieavgpdrilfGsDyPhptleaepealalldlval 271
                                       vy++ + ++ +              ++++ +  a+ + +++ iea+g+++ l ++Dy  p +  +p+ala++   +l
  gi|300712826|ref|YP_003738638.1| 209 VYFERCFIVADetvrelflpnapqsAHDTFADGAMFKEIVAGIEATGAKHNLLSTDYGQPGRMSPPDALAAFH-ADL 284
                                       555555555555666666666666667777888888889999***************9999888888888664.455 PP

                                       ....SSHHHHHHHHTHHHHHHCT CS
                      Amidohydro_2 272 ....lsdeerekilggNAarlyg 290
                                            s ++ e+++++N++ l+g
  gi|300712826|ref|YP_003738638.1| 285 etagISRADIEQMARDNPETLFG 307
                                       6899*****************98 PP

>> VCH_CASS14  Integron cassette protein VCH_CASS1 chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   1.7e-05      0.15       5      56 ..      95     146 ..      93     150 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
                        VCH_CASS14   5 idkvlaeaehhaeevaeiilalagavlakkedekvevleddgdlkrvlWatl 56 
                                       id v+a+a+  a  v   +++    +l + e++ +++l+++g+lk  +W  l
  gi|300712826|ref|YP_003738638.1|  95 IDAVVAAANMGASRVELPTMTAKRNMLEQGEPKTIDLLNENGGLKDAVWSVL 146
                                       899**********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2395.85
//
Query:       gi|300712827|ref|YP_003738639.1|  [L=304]
Description: 2-dehydropantoate 2-reductase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-35  121.3   0.1    3.6e-35  120.8   0.1    1.2  1  ApbA            Ketopantoate reductase PanE/ApbA
    2.4e-32  111.8   0.0    3.7e-32  111.1   0.0    1.3  1  ApbA_C          Ketopantoate reductase PanE/ApbA C terminal
    1.2e-09   38.4   0.0    2.3e-09   37.4   0.0    1.4  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    3.6e-05   24.0   0.0    7.7e-05   22.9   0.0    1.6  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00012   21.7   0.1    0.00021   20.9   0.1    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    0.00054   20.5   0.2     0.0012   19.3   0.2    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00067   20.2   0.0     0.0015   19.1   0.0    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0047   16.2   0.4      0.016   14.5   0.1    1.9  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0085   16.0   0.2       0.16   11.8   0.1    2.7  3  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.035   13.8   0.0      0.057   13.1   0.0    1.2  1  Anoct_dimer     Dimerisation domain of Ca+-activated chloride
       0.14   11.7   0.1       0.22   11.1   0.1    1.4  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin


Domain annotation for each model (and alignments):
>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.1   2.2e-38   3.6e-35       1     150 [.       3     151 ..       3     153 .. 0.95

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 2.2e-38
                                       EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT.CEEEEEECEEECCHSCCCCS-ESEEEE- CS
                              ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg.geeilrppealsaeekselepidlvivt 75 
                                       ia++GaGa+G+l++++L++ g+dv+l+  ++  +++l+++Gl+++se+ +++ + ++++++a    e++ +dlviv+
  gi|300712827|ref|YP_003738639.1|   3 IAVIGAGALGCLFGGRLTESGHDVYLLHYRQaYVDHLNEAGLTIESENdEKTDIAVTATTDAN---EIGVADLVIVF 76 
                                       89*****************************9****************777777777777777...*********** PP

                                       SSGGGHHHHHHHHGGGECTCEEEEEESSSSCHHHHHTTTSTTSEEEEEEEE-EEEEEETTEEEECS--EEEEEES CS
                              ApbA  76 vKayqteealeeikplldpntvvlllqNGlgheeelrealpkprvlggvtthgatregpgevhhagkgeikigel 150
                                       vK+ qt +al+e ++ ++p+t  l+lqNGl+h+++l ++ ++++ ++gvt++ga+ e+pg ++ +++g+ ++g +
  gi|300712827|ref|YP_003738639.1|  77 VKSHQTRDALAEHAACIGPETDLLSLQNGLRHYDRLLDIADEDHSFAGVTYQGAVVEEPGYIRVTSSGSSTFGGA 151
                                       ********************************************************************9999865 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   2.3e-35   3.7e-32       5     125 .]     179     299 ..     175     299 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 2.3e-35
                            ApbA_C   5 arweKllinaainpltalldckngellespelralvrallkEalavaeaegvelseerleeaveavlektaanrsSM 81 
                                        +w K l+   i pl+al+ ++ngel+e+pe+r l++++++Ea +vae++gv ++ ++  ++v a++e+   ++sSM
  gi|300712827|ref|YP_003738639.1| 179 YIWAKQLVSLPIKPLAALTHLSNGELIETPETRTLMKEIVAEAEYVAEHHGVDIPMDDPMAEVVATCEESYSHYSSM 255
                                       78*************************************************************************** PP

                            ApbA_C  82 lqDveagrktEidyinGavvklAeklgvetPvnellyellkale 125
                                       lqD++a+rktEid +nGa+v +A++ +v++P nel ++l++ale
  gi|300712827|ref|YP_003738639.1| 256 LQDIRAKRKTEIDDVNGAIVDIAREEDVDVPINELATNLVRALE 299
                                       ****************************************9976 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.4e-12   2.3e-09       1     112 [.       2     110 ..       2     126 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.4e-12
                                       -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE-- CS
                    NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvv 77 
                                       +iav+GaG+ G  +   l+e gh+v l +++++ ++++ne+    +  ++ k + +++attd +e    ad++++ v
  gi|300712827|ref|YP_003738639.1|   2 NIAVIGAGALGCLFGGRLTESGHDVYLLHYRQAYVDHLNEAGLTIESENDEKTDIAVTATTDANEIGV-ADLVIVFV 77 
                                       59*************************************************************99776.99*999** PP

                                       -HHHHHHHHHHHCCC--TT-EEEE---SEET.TTE CS
                    NAD_Gly3P_dh_N  78 PsqalrevlkklkgllkkkailvsliKGieegtlk 112
                                        s+ +r+ l+++++++ +++ l+sl  G+ +   +
  gi|300712827|ref|YP_003738639.1|  78 KSHQTRDALAEHAACIGPETDLLSLQNGLRH--YD 110
                                       ****************************976..33 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.7e-08   7.7e-05       1      75 [.       2      89 ..       2     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.7e-08
                                      EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.............EEE-SSHHHHHHHCSEEEE-SSSH CS
                     NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.............akaaesieelvasldvvitmvkag 66
                                      +i++iG G +G  +  +l+++g++v++   +++ v++l ++g             a++a++ ++ +  +d+vi++vk+ 
  gi|300712827|ref|YP_003738639.1|  2 NIAVIGAGALGCLFGGRLTESGHDVYLLHYRQAYVDHLNEAGltiesendektdiAVTATTDANEIGVADLVIVFVKSH 80
                                      69****************************************999999999988777777777777777********99 PP

                                      HHHHHHHHS CS
                     NAD_binding_2 67 kavdevieg 75
                                      +  d++ e 
  gi|300712827|ref|YP_003738639.1| 81 QTRDALAEH 89
                                      988887766 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   1.3e-07   0.00021       1      84 [.       1      77 [.       1      91 [. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.3e-07
                                      SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SE CS
                    UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadv 79
                                      m+i+viG+G +G   +  l e gh+v ++   ++ vd+ln+  + i+ ++ e+    a     +++ttd+++ +  ad+
  gi|300712827|ref|YP_003738639.1|  1 MNIAVIGAGALGCLFGGRLTESGHDVYLLHYRQAYVDHLNEAGLTIESENDEKT-DIA-----VTATTDANE-IGVADL 72
                                      89******************************************9977665543.222.....357777766.777777 PP

                                      EEE-- CS
                    UDPG_MGDP_dh_N 80 ifiaV 84
                                      +++ V
  gi|300712827|ref|YP_003738639.1| 73 VIVFV 77
                                      77776 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   7.6e-07    0.0012       1      64 [.       2      65 ..       2      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.6e-07
                                      EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEE CS
                         Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkve 64
                                      +++v+G+G +g+ ++g l+e g++V++++ +      l+e+  +i  e+ ek  i v   t ++
  gi|300712827|ref|YP_003738639.1|  2 NIAVIGAGALGCLFGGRLTESGHDVYLLHYRQAYVDHLNEAGLTIESENDEKTDIAVTATTDAN 65
                                      589***************************9988877777766665555565566665555555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     9e-07    0.0015       2      81 ..       3      89 ..       2     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9e-07
                                      EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.............-EEECECHHHHHHH-SEEEE CS
                     F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.............vkvtavdneeaaeeadvvvl 67
                                      i++iGaG +g  +  +l+++g   h++++  +  +  +++l e+               v++t+   +  +  ad v++
  gi|300712827|ref|YP_003738639.1|  3 IAVIGAGALGCLFGGRLTESG---HDVYLL-HYRQAYVDHLNEAGLtiesendektdiaVTATT--DANEIGVADLVIV 75
                                      9********************...****77.777777888877655888******995555555..44444469***** PP

                                      -S-HHHHHHHHHHC CS
                     F420_oxidored 68 avkpedveevlsel 81
                                       vk +++ ++l+e 
  gi|300712827|ref|YP_003738639.1| 76 FVKSHQTRDALAEH 89
                                      *********99987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   9.8e-06     0.016     144     213 ..       2      71 ..       1     132 [. 0.75
   2 ?   -0.4   0.0      0.34   5.5e+02     179     208 ..     211     240 ..     203     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.8e-06
                                       EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETT CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                       Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgng 213
                                       +i+v+G+G+ G+ + + l++ g++v+l++ r+  +  l+++   +  e  ek +++v   t ++ei   +
  gi|300712827|ref|YP_003738639.1|   2 NIAVIGAGALGCLFGGRLTESGHDVYLLHYRQAYVDHLNEAGLTIESENDEKTDIAVTATTDANEIGVAD 71 
                                       69****************************9999977777777777777777788888877777776554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.34
                                       TTS-HHHHHHHHHHHHHTTEEEEESCEEEE CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                       Pyr_redox_2 179 raldkelsaaleealekeGvevklgtsvke 208
                                       r+l ke+ a++e + e++Gv++ +   + e
  gi|300712827|ref|YP_003738639.1| 211 RTLMKEIVAEAEYVAEHHGVDIPMDDPMAE 240
                                       677789999999999999999987665555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1    0.0001      0.16       1      43 [.       2      44 ..       2     101 .. 0.77
   2 ?    0.4   0.0      0.31   5.1e+02      14      71 ..     159     221 ..     157     234 .. 0.52
   3 ?   -0.4   0.0      0.57   9.3e+02      18      71 ..     225     281 ..     218     289 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
                                      EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHH CS
                           3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekie 43
                                      ++aviGaG +G      + ++g++V l+  +++ +++ +e+  
  gi|300712827|ref|YP_003738639.1|  2 NIAVIGAGALGCLFGGRLTESGHDVYLLHYRQAYVDHLNEAGL 44
                                      69***************************99988877665533 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.31
                                       HHHHHHHTT-EEEEE-S.-HHHHHHHHHHHHH....HHHCCTTTTSS-HHHHCCCHHCEEEES CS
                           3HCDH_N  14 iaavfasagleVvlvdi.seealekalekiek....sleklvekgklkeeeveaalarisftt 71 
                                       i +++++ag++V lvd  ++ + +k l ++       l +l + + +++ e+++++++i +++
  gi|300712827|ref|YP_003738639.1| 159 IEEILVEAGFPVELVDDpRPYIWAKQLVSLPIkplaALTHLSNGELIETPETRTLMKEIVAEA 221
                                       667889999999999864222222222222211111355555555555555555555555444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.57
                                       HHHTT-EEEEE-S-HHHHHHHHHHHHH...HHHCCTTTTSS-HHHHCCCHHCEEEES CS
                           3HCDH_N  18 fasagleVvlvdiseealekalekiek...sleklvekgklkeeeveaalarisftt 71 
                                       + ++g+++ + d  +e +++++e+ ++    l+   +k+k++ ++v+ a+  i  ++
  gi|300712827|ref|YP_003738639.1| 225 AEHHGVDIPMDDPMAEVVATCEESYSHyssMLQDIRAKRKTEIDDVNGAIVDIAREE 281
                                       334589999999988888877777666443677777777777777766666665555 PP

>> Anoct_dimer  Dimerisation domain of Ca+-activated chloride-channel, anoctamin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.5e-05     0.057      31      76 ..      30      91 ..      20     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-05
                       Anoct_dimer 31 ekReeFeknLeeeGLelekeeeeek................kkklvFvkihaPwevlcryAE 76
                                      ++R+++ ++L+e+GL +e e++e++                +  +vFvk h + + l+++A 
  gi|300712827|ref|YP_003738639.1| 30 HYRQAYVDHLNEAGLTIESENDEKTdiavtattdaneigvaDLVIVFVKSHQTRDALAEHAA 91
                                      58******************999769************9999999******99999999885 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00013      0.22       6      70 ..       2      63 ..       1      91 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                                      -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-H CS
                              IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPD 70
                                      +iaviG G+ G   +  l +sg dv +  ++++ +v++ +e+g+++ + ++  +k+d+ ++ + D
  gi|300712827|ref|YP_003738639.1|  2 NIAVIGAGALGCLFGGRLTESGHDVYLLHYRQA-YVDHLNEAGLTIESEND--EKTDIAVTATTD 63
                                      69***********************99777766.99999999999876544..556666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2146.19
//
Query:       gi|300712828|ref|YP_003738640.1|  [L=143]
Description: thioesterase superfamily protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-15   56.6   0.1    3.9e-15   56.0   0.1    1.3  1  4HBT      Thioesterase superfamily
    1.7e-11   44.4   0.0      2e-11   44.2   0.0    1.1  1  DUF4442   Domain of unknown function (DUF4442)
    2.9e-06   27.7   0.0    3.5e-06   27.4   0.0    1.1  1  4HBT_3    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.1   6.5e-19   3.9e-15       3      74 ..      51     122 ..      49     125 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 6.5e-19
                                       SB-HHHHHHHHHHHHHHHHHHTTST..TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETT CS
                              4HBT   3 vvhgGvylallDeaagaalrslggr..gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrded 74 
                                       ++hgGv+++llD aag alr+  ++    l+++ e+++ +lrp++ +  l++earv r gr+ av+ev++++e 
  gi|300712828|ref|YP_003738640.1|  51 TLHGGVLATLLDNAAGTALRTVLKDpeTALYATTEMNLSYLRPATGD--LRAEARVRRHGRSLAVIEVDIVSER 122
                                       89*********************************************..*********************9985 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   3.3e-15     2e-11      20     104 ..      23     110 ..      17     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 3.3e-15
                                       --EEEEEETTEEEEEE---GGGB-TTS.SB-HHHHHHHHHHHHHHHHHHHS-T..TEEEEEEEEEEEE-S---S-EE CS
                           DUF4442  20 gprieelepgraevrlkkrrrvrNhig.tvHAiAicnlaElamGllaeatlpd..thrwipkgmevdYlakatgdlt 93 
                                       g++i e + g+a++rl++r+++ N  g t+H++ +++l++ a+G+ + + l+d  t+    + m+ +Yl++atgdl+
  gi|300712828|ref|YP_003738640.1|  23 GITIVEESEGNAVLRLPHRKELTNPNGdTLHGGVLATLLDNAAGTALRTVLKDpeTALYATTEMNLSYLRPATGDLR 99 
                                       788999999****************988***********************8877999999**************** PP

                                       EEEE-TTS-TT CS
                           DUF4442  94 avaelepedvg 104
                                       a+a++ ++ + 
  gi|300712828|ref|YP_003738640.1| 100 AEARVRRHGRS 110
                                       ****9986554 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   5.9e-10   3.5e-06       6      81 ..      46     130 ..      41     141 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 5.9e-10
                                       ECTTC..-HHHHHHHHHHHHHHT.......-S.SS...EEEEEEE-S---SEEEEEEEEEEE--SS-EEEEEEEEET CS
                            4HBT_3   6 tpggag.yGGyvlAlalraaqrtv......pdprl...hslhvyFlrpgdagpviyhvervrdGrsfstrtvelsqg 72 
                                       +p+g   +GG+++ l+ +aa +++      p++ l     + +++lrp+    ++ ++++ r Grs ++++v +  +
  gi|300712828|ref|YP_003738640.1|  46 NPNGDTlHGGVLATLLDNAAGTALrtvlkdPETALyatTEMNLSYLRPATG-DLRAEARVRRHGRSLAVIEVDIVSE 121
                                       5666655**************776666966444456789*********876.799999999************9886 PP

                                       TEEEEEEEE CS
                            4HBT_3  73 grpiftata 81 
                                         p   +t+
  gi|300712828|ref|YP_003738640.1| 122 RTPGEWTTV 130
                                       554333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1034.28
//
Query:       gi|300712829|ref|YP_003738641.1|  [L=259]
Description: short-chain dehydrogenase/reductase SDR [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-62  211.8   0.4    1.2e-62  211.5   0.4    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.3e-55  187.9   0.1    1.5e-55  187.7   0.1    1.1  1  adh_short        short chain dehydrogenase
    2.7e-13   50.2   0.1    3.2e-13   50.0   0.1    1.1  1  KR               KR domain
     0.0001   21.6   0.0    0.00013   21.2   0.0    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    0.00012   21.6   0.0     0.0002   20.9   0.0    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0026   17.8   0.0       0.59   10.1   0.0    2.3  2  Glyco_transf_4   Glycosyltransferase Family 4
     0.0063   16.4   0.2      0.011   15.7   0.2    1.4  1  NAD_binding_10   NAD(P)H-binding
  ------ inclusion threshold ------
      0.037   14.5   0.0        1.2    9.6   0.0    2.2  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
      0.083   12.2   0.0       0.18   11.1   0.0    1.6  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.5   0.4   6.1e-66   1.2e-62       1     229 [.      17     248 ..      17     250 .. 0.92

  Alignments for each domain:
  == domain 1  score: 211.5 bits;  conditional E-value: 6.1e-66
                                       TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE.....EE--TTSHHHHHHHHHHHHHHHSSEE CS
                      adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev.....lecDVtdeeqvealveevvekfgklD 71 
                                       Ga sgIGr iA+ +a++G +  ++ +++++ +  +ee+ ++ + ++     +ecDV+++++v+++ve++vekfg +D
  gi|300712829|ref|YP_003738641.1|  17 GASSGIGRRIAEGFADQGVDTTICSRKQSNvDPVAEEINDNDSDSIghilpIECDVRNRDSVDRMVERTVEKFGAID 93 
                                       899*************************99555555555544444455689************************** PP

                                       EEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHH CS
                      adh_short_C2  72 ilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaa 147
                                       ilvnnag a k   +f  +s++++++++d+nl+++f++++aa++++++g gs+vn+ss++++ + p+  +ygaaKa+
  gi|300712829|ref|YP_003738641.1|  94 ILVNNAGAAFK--CDFDGLSENGWKTIVDINLHGVFNCTHAAREALQDGgGSVVNISSIRSQEAAPHEIHYGAAKAG 168
                                       ***********..*******************************999988*************************** PP

                                       HHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--S CS
                      adh_short_C2 148 lealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitG 224
                                       ++++tr+lA e+++ g+RvN+vspg+i+T+ a  + ++d   + ++++   +++gt+ e+a+++ fLas++as+i G
  gi|300712829|ref|YP_003738641.1| 169 VNNFTRSLASEWAASGVRVNCVSPGFIATPGAVTAGDTDP--ADIDRSNVNRKIGTTAEIADVVEFLASPAASFIDG 243
                                       *******************************998886555..677788888889*********************** PP

                                       EEEEE CS
                      adh_short_C2 225 qtlvv 229
                                       ++l v
  gi|300712829|ref|YP_003738641.1| 244 EILTV 248
                                       ***98 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.7   0.1   7.6e-59   1.5e-55       3     189 ..      13     202 ..      11     208 .. 0.95

  Alignments for each domain:
  == domain 1  score: 187.7 bits;  conditional E-value: 7.6e-59
                                       EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSE...EEEEE-TTTSHHHHHHHHHHHHHHH CS
                         adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gak...alaiqvDvtdreevealvekavkkl 75 
                                       +++tGassGIGr ia+ +a +G+++++++r+++++  va+e++++ +++   +l+i++Dv++r++v+++ve+ v+k+
  gi|300712829|ref|YP_003738641.1|  13 AIITGASSGIGRRIAEGFADQGVDTTICSRKQSNVDPVAEEINDNdSDSighILPIECDVRNRDSVDRMVERTVEKF 89 
                                       89******************************************984434449************************ PP

                                       SSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHH CS
                         adh_short  76 gkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAs 152
                                       g +d+LvnNAG + +++f  lse+ w+ ++++Nl+gvf++t+a+ +a l+  +G++vn+sS+ ++++ ++ + Y+A+
  gi|300712829|ref|YP_003738641.1|  90 GAIDILVNNAGAAFKCDFDGLSENGWKTIVDINLHGVFNCTHAAREA-LQDGGGSVVNISSIRSQEAAPHEIHYGAA 165
                                       *******************************************9999.6699************************* PP

                                       HHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
                         adh_short 153 KaavagltrslakelaptgirvnavaPGlvdTdmake 189
                                       Ka+v+ +trsla e+a +g+rvn+v PG+++T+ a +
  gi|300712829|ref|YP_003738641.1| 166 KAGVNNFTRSLASEWAASGVRVNCVSPGFIATPGAVT 202
                                       ********************************97655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.1   1.6e-16   3.2e-13       3     174 ..      13     191 ..      11     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 1.6e-16
                                       EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-.EEEE----TT-HHHHHHHHHHHHHH CS
                                KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealga.evevvaaDvsdkdavealleeikae 78 
                                        +itG+  g+G+ +a+  a++g  +  ++sR++++ +  +++i+   +  + ++  +++Dv ++d+v +++e+  ++
  gi|300712829|ref|YP_003738641.1|  13 AIITGASSGIGRRIAEGFADQGVDTT-ICSRKQSNVDPVAEEINDNDSDSIgHILPIECDVRNRDSVDRMVERTVEK 88 
                                       69********************8875.57888555555555555555554359************************ PP

                                       SS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHH CS
                                KR  79 eppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaa 152
                                       +++i   ++ Ag++ +  ++ ++++ +++++   ++G+ n  ++ ++   +    +v +SSi +   ++++ +Y aa
  gi|300712829|ref|YP_003738641.1|  89 FGAIDILVNNAGAAFKCDFDGLSENGWKTIVDINLHGVFNCTHAAREalqDGGGSVVNISSIRSQEAAPHEIHYGAA 165
                                       *******************************************999955455568********************99 PP

                                       ....HHHHHHHHHHHHHHHHTEEEEE CS
                                KR 153 ....NaflDalaeyrrsqglpavsin 174
                                           N+f  +la++++++g ++ ++ 
  gi|300712829|ref|YP_003738641.1| 166 kagvNNFTRSLASEWAASGVRVNCVS 191
                                       66667777788888888887776665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.6e-08   0.00013       2     166 ..      14     190 ..      13     201 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.6e-08
                                       EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.... CS
                   Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.. 76 
                                       ++tGa+  iG+++ + ++++ + +  + +r+  +++ +++e++++ +++++  +i+p+ +dvr+++++++++e++  
  gi|300712829|ref|YP_003738641.1|  14 IITGASSGIGRRIAEGFADQGVDT-TICSRKQSNVDPVAEEINDN-DSDSI-GHILPIECDVRNRDSVDRMVERTve 87 
                                       69****************999976.6799************9654.45567.7889**********99988875422 PP

                                       ...T-SEEEE-..-----..HHHHHHSHHHHHHHHHHHHHHHHHHHHHT...T-SEEEEEEEGGG..SS--SH.HHH CS
                   Polysacc_synt_2  77 ...kvdvvfha..AAlKh..VPlveenpleaiktNvlgtenvieaaiea...gvkkvvliStDKA..vnPtnv.mGa 140
                                           +d++++   AA+K     l e+ +   ++ N +g  n+ +aa ea   g  +vv iS+ +   + P  + +Ga
  gi|300712829|ref|YP_003738641.1|  88 kfgAIDILVNNagAAFKCdfDGLSENGWKTIVDINLHGVFNCTHAAREAlqdGGGSVVNISSIRSqeAAPHEIhYGA 164
                                       2234677665423677742135778888889999****999988876542227789999998554114455544899 PP

                                       HHHHHHHHHHHGGG--SSS--EEEEE CS
                   Polysacc_synt_2 141 tKrlaekllqalakeseekktkfvvv 166
                                       +K+  + ++ +la+e +++  ++ +v
  gi|300712829|ref|YP_003738641.1| 165 AKAGVNNFTRSLASEWAASGVRVNCV 190
                                       99998888888888777776666666 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   9.9e-08    0.0002       2     115 ..      14     149 ..      13     193 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.9e-08
                                       EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHH....HH. CS
                         Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfk....ee. 63 
                                       ++tGa+  iG+ +++ ++++g++ +  +r++s+    ++e              +e+d+++r++++r+++    ++ 
  gi|300712829|ref|YP_003738641.1|  14 IITGASSGIGRRIAEGFADQGVDTTICSRKQSNVDPVAEEINdndsdsighiLPIECDVRNRDSVDRMVErtveKFg 90 
                                       89*********************88888886666655544447899****98889********76665541111566 PP

                                       T-SEEEE-..-S.---HHHHHHSHHHHHH.HHTHHHHHHHHHHHHH...TCTEEEEEEE CS
                         Epimerase  64 qpdavihl..Aa.vggvaassedpadfie.knlqgtlnlleaarka...gvkrllflsS 115
                                       ++d+ ++   Aa  ++ +  se+  ++i  +nl+g+ n  +aar+a   g   ++++sS
  gi|300712829|ref|YP_003738641.1|  91 AIDILVNNagAAfKCDFDGLSENGWKTIVdINLHGVFNCTHAAREAlqdGGGSVVNISS 149
                                       7999888735555555555555555555449*******999999875544448888887 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0062        12      10      84 ..      25     102 ..      23     151 .. 0.75
   2 !   10.1   0.0    0.0003      0.59       3      35 ..     168     200 ..     166     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0062
                    Glyco_transf_4  10 eLaraLarrGheVtvvtpgddgpleeev...elvvrvprvplpllkrllrslaflrrlrrllkre.kpDvvHahspa 82 
                                       ++a+++a++G++ t+++++++   + ++   ++  + ++  lp+  + +++ +  r + r ++++  +D++ +++++
  gi|300712829|ref|YP_003738641.1|  25 RIAEGFADQGVDTTICSRKQSNVDPVAEeinDNDSDSIGHILPIECDVRNRDSVDRMVERTVEKFgAIDIL-VNNAG 100
                                       79**************9998876666655675555556666677777777777777777777777777877.55555 PP

                    Glyco_transf_4  83 al 84 
                                       a+
  gi|300712829|ref|YP_003738641.1| 101 AA 102
                                       55 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0003
                    Glyco_transf_4   3 GverhvleLaraLarrGheVtvvtpgddgplee 35 
                                       Gv+++++ La ++a+ G++V  v+pg    ++ 
  gi|300712829|ref|YP_003738641.1| 168 GVNNFTRSLASEWAASGVRVNCVSPGFIATPGA 200
                                       9**********************9987665554 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   5.3e-06     0.011       1     176 [.      17     229 ..      17     237 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.3e-06
                                       TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH....HHHCTT.....TCEEEE--TT-CCHHHHHHT.......T- CS
                    NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekla....eleaee.....glevvegdvtdvedlaealk.......ga 61 
                                       GA+ ++Gr++++  +++ g+++t+  R+++ ++    e+ +++     ++  +e dv + +++ + ++        +
  gi|300712829|ref|YP_003738641.1|  17 GASSGIGRRIAEGFADQ-GVDTTICSRKQSNVDpvaeEINDNDsdsigHILPIECDVRNRDSVDRMVErtvekfgAI 92 
                                       9****************.5*********999984444222222233337778************9999888888777 PP

                                       SEEEES---TCC......HHHH................HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHC CS
                    NAD_binding_10  62 daVvsalggggk......deeg................aknivdaakeagvkRfvlvsaigvgdevpgefgewnkel 116
                                       d+ v ++g+  k                          + ++++ a + g   +v +s+i +++ +p+e +     +
  gi|300712829|ref|YP_003738641.1|  93 DILVNNAGAAFKcdfdglS--EngwktivdinlhgvfnCTHAAREALQDGGGSVVNISSIRSQEAAPHEIHYG---A 164
                                       9988888776666555542..03467777777888555444444455679999********998777766544...3 PP

                                       CHHHHHH.HHHHHHHHHHSSSEEEEEEE-CEE-S.T..--SEEEEETTSS----EE.EHHHHHHH CS
                    NAD_binding_10 117 lkaylaa.kraaeellrasgldwTivrpggLtde.p..ttkyrvvekgepfkggsi.sradVAdv 176
                                        ka +    r  + +  asg+    v+pg++    +  ++++  ++ + +  +++i + a +Adv
  gi|300712829|ref|YP_003738641.1| 165 AKAGVNNfTRSLASEWAASGVRVNCVSPGFIATPgAvtAGDTDPADIDRSNVNRKIgTTAEIADV 229
                                       44444441444555677888888888888885541422333444443444334444345555544 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.083   1.7e+02       8      33 ..      24      49 ..      17      67 .. 0.84
   2 ?    9.6   0.0   0.00058       1.2       2      26 ..     168     198 ..     167     241 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.083
                   Glyco_trans_4_4  8 aelaraLaarGheVtvltpapapgap 33
                                      +++a+++a++G++ t+  +++ +++p
  gi|300712829|ref|YP_003738641.1| 24 RRIAEGFADQGVDTTICSRKQSNVDP 49
                                      679*************9988877765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00058
                   Glyco_trans_4_4   2 GigryvaelaraLaarGheVtvlt......p 26 
                                       G++  ++ la+++aa G++V ++       p
  gi|300712829|ref|YP_003738641.1| 168 GVNNFTRSLASEWAASGVRVNCVSpgfiatP 198
                                       89999******************95544331 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.2e-05      0.18      28      76 ..       2      50 ..       1      55 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.2e-05
                                      HHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHH CS
                     THF_DHG_CYH_C 28 ketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaei 76
                                      ++++ +++g ++++ G+s+ +g+ +a  ++ ++  +t+c +k ++++ +
  gi|300712829|ref|YP_003738641.1|  2 SHNKFNVDGSSAIITGASSGIGRRIAEGFADQGVDTTICSRKQSNVDPV 50
                                      578899***********************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1902.14
//
Query:       gi|300712830|ref|YP_003738642.1|  [L=352]
Description: hypothetical protein HacjB3_17543 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-102  342.8   0.0   1.5e-102  342.6   0.0    1.0  1  BKACE     beta-keto acid cleavage enzyme


Domain annotation for each model (and alignments):
>> BKACE  beta-keto acid cleavage enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.6   0.0  8.1e-107  1.5e-102       2     274 .]      48     344 ..      47     344 .. 0.96

  Alignments for each domain:
  == domain 1  score: 342.6 bits;  conditional E-value: 8.1e-107
                                       B-EEEE-S-SSS-CCC-TTS--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHHTTSEE CS
                             BKACE   2 viitvavtGavttkednpavPvtpeeiaeeaveaaeaGAaivHlHaRdpedgrpsldpelyrevlarirekepdvii 78 
                                        i+t+avtGa++ ++++p++P+tp+ i+eeav aa+aGA+ivHlH+Rdpe+g+p++d+el+r v +r+++ ++d++i
  gi|300712830|ref|YP_003738642.1|  48 AIVTCAVTGAIHVPTMSPYLPITPDKIVEEAVVAADAGASIVHLHVRDPETGEPTSDLELFRSVAERVKD-RCDAVI 123
                                       59********************************************************************.8***** PP

                                       EE-SSTTTTG-HHHHHTHHHHH--SEEEEE-S-EEEB-......................SGCEE---HHHHHHHHH CS
                             BKACE  79 nlttggastmsaeerlavlealkpemasldlgslnfgl......................kdlvfentpedieellr 133
                                       +lttgga+tms+eer+av+ +l+pemas+++gs+nfgl                      +dl+f nt+e +e+++ 
  gi|300712830|ref|YP_003738642.1| 124 QLTTGGAPTMSVEERTAVVPELEPEMASCNMGSINFGLypildafdefeyeweteylegsRDLIFPNTFESLEKIIP 200
                                       ************************************9988888777766666555555444**************** PP

                                       HHHHTT-EEEEEESSHHHHHHHHHHHHTTSS-SSEEEEEEE--CTS--S-HHHHHHHHHHHHHH.TTC.EEEEEE-G CS
                             BKACE 134 rmaeagvkpeievfdvghlrnvkrlieeGllkgpllvqfvlgvpggapatpenllflkemadrl.peg.awsvagig 208
                                       +++ +g++pe+ev+dvghl+n+k+++++G+l++p+++qfv+g++gg+ a+ ++ll+l ++a++l +++ ++sv+g+g
  gi|300712830|ref|YP_003738642.1| 201 MFQSYGTMPELEVYDVGHLYNAKHFVDRGILETPIHIQFVMGIHGGISADHDHLLHLVDTAEKLfGDDfSYSVIGAG 277
                                       ****************************************************************999989******* PP

                                       GGHHHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HHHHHHHHHHHHHHT.T-EB--HHHHHHHCT. CS
                             BKACE 209 raqlplaaaalalGghvRvGlEDnlylkkgelaksNaelVeravriarel.greiatpaeaReilgL 274
                                       r q++l ++a+ +Gg+ RvGlED+ly++kgela+sNa++Ve++v++ re+ gr++a+p+e+R+ lgL
  gi|300712830|ref|YP_003738642.1| 278 RMQMALGTTAVNMGGNARVGLEDSLYIRKGELAESNAQQVEKMVELTREVsGRDVASPEEVRSFLGL 344
                                       *************************************************889*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2506.52
//
Query:       gi|300712831|ref|YP_003738643.1|  [L=273]
Description: ArcR family transcription regulator [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-36  123.9   0.0    8.8e-36  122.6   0.0    1.6  2  IclR            Bacterial transcriptional regulator
    1.5e-13   50.3   0.0    3.8e-13   49.0   0.0    1.7  1  HTH_IclR        IclR helix-turn-helix domain
    2.5e-08   33.4   0.0    4.9e-08   32.4   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
    3.6e-08   33.1   0.0    6.7e-08   32.3   0.0    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
    4.7e-06   26.4   0.0      1e-05   25.3   0.0    1.5  1  MarR_2          MarR family
    6.4e-06   26.1   0.0    1.7e-05   24.8   0.0    1.7  1  HTH_20          Helix-turn-helix domain
    8.3e-05   22.4   0.0     0.0002   21.2   0.0    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00033   20.5   0.0    0.00072   19.5   0.0    1.5  1  HTH_11          HTH domain
    0.00034   20.7   0.0    0.00091   19.4   0.0    1.6  1  HTH_34          Winged helix DNA-binding domain
    0.00047   20.2   0.0      0.001   19.1   0.0    1.5  1  DUF3489         Protein of unknown function (DUF3489)
    0.00093   18.9   0.0     0.0015   18.3   0.0    1.2  1  DUF4423         Domain of unknown function (DUF4423)
     0.0016   18.1   0.1     0.0046   16.7   0.0    1.7  2  HTH_DeoR        DeoR-like helix-turn-helix domain
     0.0021   18.2   0.0     0.0046   17.1   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0041   17.0   0.0     0.0075   16.2   0.0    1.4  1  MarR            MarR family
     0.0041   17.2   0.0       0.01   16.0   0.0    1.6  1  B-block_TFIIIC  B-block binding subunit of TFIIIC
  ------ inclusion threshold ------
      0.017   15.6   0.6      0.032   14.7   0.1    1.7  1  HTH_27          Winged helix DNA-binding domain
      0.049   14.0   0.0       0.11   12.8   0.0    1.5  1  Rrf2            Transcriptional regulator
      0.078   13.4   0.2          1    9.8   0.0    2.4  2  HTH_40          Helix-turn-helix domain
       0.08   13.6   0.0       0.16   12.6   0.0    1.4  1  RPA_C           Replication protein A C terminal
      0.094   12.5   0.0       0.19   11.6   0.0    1.4  1  DUF742          Protein of unknown function (DUF742)
      0.098   12.7   0.0       0.25   11.3   0.0    1.7  1  HTH_45          Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.1   2.6e+03      55      74 ..      61      80 ..      39      83 .. 0.76
   2 !  122.6   0.0     1e-38   8.8e-36       4     127 ..     143     267 ..     140     269 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.1
                                      HHHHHHHHHHHHTSEEEESS CS
                              IclR 55 eLleeLakvReqGyavdreE 74
                                      + ++ L++ ++ Gy v++++
  gi|300712831|ref|YP_003738643.1| 61 TVHSHLETLKNAGYIVKNGD 80
                                      56778888899999888776 PP

  == domain 2  score: 122.6 bits;  conditional E-value: 1e-38
                                       EETTSTT-EE.EGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTE CS
                              IclR   4 ravsaiGtrl.plyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegv 79 
                                       +  s++G+r   l+ata+GK++La+ d+ee+++++e+++l +lte+Tit++++L+eeLa+vRe+Gya+++eE+ eg+
  gi|300712831|ref|YP_003738643.1| 143 STGSRLGRRRhMLHATAAGKSILAFTDREEVREIIESKGLPELTENTITNEDALFEELAEVRERGYAFNYEEHIEGL 219
                                       6678899875169**************************************************************** PP

                                       EEEEEEEE-TTSSEEEEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHH CS
                              IclR  80 rciAapifdasgevvaAvsvsgptarlteeelkeellalvreaArkis 127
                                       r++Aap+    g+vv+A+svsgp+ r+  e ++++l + +  + ++i+
  gi|300712831|ref|YP_003738643.1| 220 RAVAAPVQKPDGTVVGAISVSGPAHRMHGESFTKKLPENILGVCNEIE 267
                                       **********************************99998887777775 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   4.5e-16   3.8e-13       1      52 []      29      79 ..      29      79 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 4.5e-16
                                      HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
                          HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqdg 52
                                      ++ ++l+iL++l +++++ +++el++++ +pkStvh +L tL + Gy+ ++g
  gi|300712831|ref|YP_003738643.1| 29 AVRKTLRILELLKKHDGA-RVTELSNELEWPKSTVHSHLETLKNAGYIVKNG 79
                                      689**************8.*****************************9885 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   5.7e-11   4.9e-08       4      47 ..      32      75 ..      31      76 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 5.7e-11
                            HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                                      ++++ILelL+k+ +   +eL+ +l  ++stv+ +l+ L+++G+I
  gi|300712831|ref|YP_003738643.1| 32 KTLRILELLKKHDGARVTELSNELEWPKSTVHSHLETLKNAGYI 75
                                      679****************************************9 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   7.9e-11   6.7e-08       5      45 ..      34      75 ..      32      77 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 7.9e-11
                                      HHHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                             HTH_5  5 lkILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                                      l+IL lL +   + v+el++el+ ++stv  HL  L++aG++
  gi|300712831|ref|YP_003738643.1| 34 LRILELLKKhDGARVTELSNELEWPKSTVHSHLETLKNAGYI 75
                                      89*******656****************************98 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.2e-08     1e-05       8      54 ..      34      78 ..      31      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.2e-08
                                      HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
                            MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                                      +r+L  L  ++g   +v+el  +l  +ks+v+ +l+ L  aG++++ 
  gi|300712831|ref|YP_003738643.1| 34 LRILELLKKHDG--ARVTELSNELEWPKSTVHSHLETLKNAGYIVKN 78
                                      699*********..9*****************************875 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.9e-08   1.7e-05      13      55 ..      34      76 ..      31      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.9e-08
                                      HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
                            HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                                      +ril +L+  +g+ ++el  +l+++k+t++ HL++L  ag++ 
  gi|300712831|ref|YP_003738643.1| 34 LRILELLKKHDGARVTELSNELEWPKSTVHSHLETLKNAGYIV 76
                                      79**************************************986 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.3e-07    0.0002      16      59 ..      38      82 ..      35     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.3e-07
                                      HHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTT CS
                              TrmB 16 aLl.klgpatadeiaeelgvprskvYevLrsLedkGlVerekgrp 59
                                       Ll k++ a+++e+++el+ p+s+v + L+ L+++G++ ++  ++
  gi|300712831|ref|YP_003738643.1| 38 ELLkKHDGARVTELSNELEWPKSTVHSHLETLKNAGYIVKNGDSY 82
                                      577799********************************9887665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.4e-07   0.00072       2      46 ..      33      76 ..      32      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.4e-07
                            HTH_11  2 llqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpI 46
                                      +l ilelL++++g     eL+ eL+  ++tv+ ++++L+ +g+ +
  gi|300712831|ref|YP_003738643.1| 33 TLRILELLKKHDG-ARVTELSNELEWPKSTVHSHLETLKNAGYIV 76
                                      578*****88888.8999************************876 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.1e-06   0.00091       3      45 ..      34      76 ..      33      81 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-06
                            HTH_34  3 lavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYie 45
                                      l +l +L + d a  +el+++le  ++   +hl++L++agYi+
  gi|300712831|ref|YP_003738643.1| 34 LRILELLKKHDGARVTELSNELEWPKSTVHSHLETLKNAGYIV 76
                                      7899**************************************7 PP

>> DUF3489  Protein of unknown function (DUF3489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.2e-06     0.001       8      43 ..      32      67 ..      27      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.2e-06
                           DUF3489  8 KqarlialLrrpeGatiaeimeatgWqahtvRgala 43
                                      K+ r+++lL++ +Ga ++e++++++W + tv   l 
  gi|300712831|ref|YP_003738643.1| 32 KTLRILELLKKHDGARVTELSNELEWPKSTVHSHLE 67
                                      7789**************************977665 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.8e-06    0.0015      24      79 ..      34      85 ..      29     100 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
                           DUF4423 24 pvirellplkdfkadpeelakrlrpkisaeevekalefLlklgllkkdedgkyrqt 79
                                      + i+ell+ +d+ a + el++ l    +++ v++ le+L+++g + k++d  y+  
  gi|300712831|ref|YP_003738643.1| 34 LRILELLKKHDG-ARVTELSNELE--WPKSTVHSHLETLKNAGYIVKNGD-SYQLG 85
                                      789*********.***********..***********************9.88765 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.4e-06    0.0046       5      46 ..      36      77 ..      33      83 .. 0.95
   2 ?   -2.9   0.0       7.2   6.1e+03      41      49 ..     240     248 ..     237     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.4e-06
                          HTH_DeoR  5 ilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltR 46
                                      ilellk+++  +v+el+++l+  + T+   L++L+++g +++
  gi|300712831|ref|YP_003738643.1| 36 ILELLKKHDGARVTELSNELEWPKSTVHSHLETLKNAGYIVK 77
                                      9*************************************9988 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.2
                          HTH_DeoR  41 qglltRthG 49 
                                       +g+ +R+hG
  gi|300712831|ref|YP_003738643.1| 240 SGPAHRMHG 248
                                       6899****9 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.4e-06    0.0046      13      55 ..      36      78 ..      34      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.4e-06
                                      HHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
                    Fe_dep_repress 13 IYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyveye 55
                                      I++l ++++ +++++l+ +L+  +s+V   l+ L+++Gy++ +
  gi|300712831|ref|YP_003738643.1| 36 ILELLKKHDGARVTELSNELEWPKSTVHSHLETLKNAGYIVKN 78
                                      78899999*******************************9765 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.8e-06    0.0075       6      48 ..      34      76 ..      31      80 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.8e-06
                                      HHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                              MarR  6 fviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                                      ++iL++l+ +++++v+eL + l+  kstv   l +L  +G+i 
  gi|300712831|ref|YP_003738643.1| 34 LRILELLKKHDGARVTELSNELEWPKSTVHSHLETLKNAGYIV 76
                                      69**************************************995 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05      0.01      14      51 ..      41      78 ..      35      97 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
                    B-block_TFIIIC 14 sRysGitqsdLakeskqdprslfyrlksLekkgLIvkq 51
                                      ++++G   ++L++e++  ++ ++++l +L++ g+Ivk+
  gi|300712831|ref|YP_003738643.1| 41 KKHDGARVTELSNELEWPKSTVHSHLETLKNAGYIVKN 78
                                      68999*******************************96 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   3.7e-05     0.032       8      53 ..      36      80 ..      30      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-05
                            HTH_27  8 vLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgd 53
                                      +L+l++  +++++ ++l+  l   +s++++ l+ L ++G+++++gd
  gi|300712831|ref|YP_003738643.1| 36 ILELLK-KHDGARVTELSNELEWPKSTVHSHLETLKNAGYIVKNGD 80
                                      567777.999********************************9998 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013      0.11      10      55 ..      33      75 ..      28      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                                      HHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                              Rrf2 10 alhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglv 55
                                       l++l  L+k+++   ++++e++++ + ++s +   l++L++ag++
  gi|300712831|ref|YP_003738643.1| 33 TLRILELLKKHDG---ARVTELSNELEWPKSTVHSHLETLKNAGYI 75
                                      5777778888888...56***************************9 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0012         1      10      42 ..      43      75 ..      33      99 .. 0.86
   2 ?    1.0   0.1      0.68   5.8e+02      32      60 ..     153     179 ..     151     214 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
                            HTH_40 10 eeglsieeIAkerglkesTIegHLaelieegee 42
                                       +g  + e ++e +  +sT+ +HL  l ++g+ 
  gi|300712831|ref|YP_003738643.1| 43 HDGARVTELSNELEWPKSTVHSHLETLKNAGYI 75
                                      4788999*********************99973 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.68
                            HTH_40  32 HLaelieegeeidlerlvseeeekeIeea 60 
                                       H++++  +g+  ++  ++++ee +eI+e 
  gi|300712831|ref|YP_003738643.1| 153 HMLHATAAGK--SILAFTDREEVREIIES 179
                                       8888888887..55557777777777654 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00019      0.16      53      97 ..      35      75 ..      16      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00019
                                      HHHHHHHH.SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHHTTSE CS
                             RPA_C 53 qvlnlikqspeseeGvhvdeiaqklrlsvndvkqavdeLsneGii 97
                                      ++l+l+k+     +G  v e++++l+ ++++v + +++L n+G+i
  gi|300712831|ref|YP_003738643.1| 35 RILELLKK----HDGARVTELSNELEWPKSTVHSHLETLKNAGYI 75
                                      55566655....99******************************9 PP

>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00022      0.19      42      87 ..      30      77 ..      13      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
                            DUF742 42 qpehrailrLcre..plsVaelaAelklPvgvvrvLlsdLldaglltv 87
                                        +  +il+L ++     V el+ el+ P ++v+  l  L +ag+++ 
  gi|300712831|ref|YP_003738643.1| 30 VRKTLRILELLKKhdGARVTELSNELEWPKSTVHSHLETLKNAGYIVK 77
                                      566789*****9988899**************************9975 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0003      0.25      10      58 ..      35      84 ..      31      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
                            HTH_45 10 dILeais.egeakkTkimykanLsykllnkYLdmLvekglikkskekYvl 58
                                       ILe ++ +++a+ T++  + +   +++++ L++L + g+i k++++Y+l
  gi|300712831|ref|YP_003738643.1| 35 RILELLKkHDGARVTELSNELEWPKSTVHSHLETLKNAGYIVKNGDSYQL 84
                                      57888876899*************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2079.06
//
Query:       gi|300712832|ref|YP_003738644.1|  [L=413]
Description: Butyryl-CoA dehydrogenase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-39  135.3   0.1    2.6e-39  134.8   0.1    1.2  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    5.8e-22   77.7   0.0    9.9e-22   77.0   0.0    1.3  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    8.3e-15   55.4   0.1      3e-14   53.6   0.1    1.9  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    4.1e-14   53.0   0.1    6.5e-14   52.4   0.1    1.3  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8   0.1   5.8e-43   2.6e-39       2     150 .]     253     401 ..     252     401 .. 0.99

  Alignments for each domain:
  == domain 1  score: 134.8 bits;  conditional E-value: 5.8e-43
                                       BHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH-- CS
                     Acyl-CoA_dh_1   2 kGfrvametlnheRlavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaeal 78 
                                        G+ +a++ l  +R++ aa +lg + + ++  +e+a++r    ++l+d+q++++k+a+ a++ +aa+  vy+aa+++
  gi|300712832|ref|YP_003738644.1| 253 GGLGIAKQCLGESRVLYAANSLGPIDQSIRMGIEWANNRVVGDEKLADKQAIQWKIAKSAVDYQAAKYSVYHAAQRF 329
                                       6999************************************************************************* PP

                                       ------HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHHHHHH. CS
                     Acyl-CoA_dh_1  79 dagkpdraeasmaKlfaselaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrniiarrll 150
                                       d+g++ r ++s++K++++e++++v d+++q++GgaG+  + p+er++r++rv rigeG+seiq+ +iar+ll
  gi|300712832|ref|YP_003738644.1| 330 DDGEDIRHASSITKYQTTETLWTVLDRMVQIHGGAGVDGDLPLERWLRESRVRRIGEGPSEIQLKTIARNLL 401
                                       *********************************************************************985 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   2.2e-25   9.9e-22       1      78 [.     145     224 ..     145     237 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 2.2e-25
                                       EEE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEE.TS---..----EEEEEEE..GGGEE CS
                     Acyl-CoA_dh_M   1 afalTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlar.tekpd..rarglslflvprdapgvs 74 
                                       +f+lTEp aGsd ++++t  ae+dg+e+v+nG+K++i+ a+++++++++ar + k d  +++g+++flvp+d+ g+s
  gi|300712832|ref|YP_003738644.1| 145 CFGLTEPAAGSDPRGMET-RAEKDGDEWVINGTKHYISWAGDSDFIILFARtKPKGDdiNDHGITTFLVPSDSDGIS 220
                                       9*****************.88999999************************75555579****************** PP

                                       E--- CS
                     Acyl-CoA_dh_M  75 vrri 78 
                                       +r i
  gi|300712832|ref|YP_003738644.1| 221 MRSI 224
                                       9987 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1   6.8e-18     3e-14       6     113 .]       1     141 [.       1     141 [. 0.71

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 6.8e-18
                                       HHHHHHHHHHHHHTHHHHHHHHHHTS......................GHHH....HHHHHHHTTCTSTTS-GGGTS CS
                     Acyl-CoA_dh_N   6 alrdtvrefaeeelaphaaewdeege......................fpre....lwkklaelGllgitvpeeygG 56 
                                       +lr++vr+f++ee +p  ++  +e e                      +p+e    l+kk++++G++++ vpeeygG
  gi|300712832|ref|YP_003738644.1|   1 MLRQEVRRFVDEEFRPILNDLPDEIEryhnldpknpeltdnvrphpikIPEEdqqrLRKKAKKAGFWAMGVPEEYGG 77 
                                       89**************855553222223345666677778888888778855454459******************* PP

                                       --S-HHHHHHHHHHHHHH-HHHHH.HHHH.....HHHTTH.HHHHHHS-HHHHHHHHHHHHTTS CS
                     Acyl-CoA_dh_N  57 agldyleaaivaeelaradaglal.llgv.....hsslva.pailrfGteeqkrryLpklasge 113
                                        gl+ +e ++v+eel+++ +gl   +lgv     + +++   a l  + + q +++ +++++ge
  gi|300712832|ref|YP_003738644.1|  78 GGLNLVERCVVLEELSKHRMGLYQaGLGVielgpGLTVGEpAAYLDNADDYQIKEFFQPCIDGE 141
                                       *****************76653332333322222444554456688888888888888888776 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   1.4e-17   6.5e-14       4     125 ..     270     381 ..     267     385 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.4e-17
                                       HHHHHHHHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH CS
                     Acyl-CoA_dh_2   4 aavalGaAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedr 80 
                                       aa  lG     +   +e+a++rv   + eklad++a+q ++a++a + +AA+  +++aa+r     ++g+ +    r
  gi|300712832|ref|YP_003738644.1| 270 AANSLGPIDQSIRMGIEWANNRVV--GDEKLADKQAIQWKIAKSAVDYQAAKYSVYHAAQR----FDDGEDI----R 336
                                       6777888888888899********..***********************************....9*****9....* PP

                                       HHHHHHHHHHHHHHHHHHHHHHHHCGGGGGBTT-HHHHHHHHHHH CS
                     Acyl-CoA_dh_2  81 aearraaalavelaiaavdalfeaaGgsalrkesplqRlwRDaha 125
                                         +++++  ++e+   + d++++++Gg +++ + pl+R +R+ ++
  gi|300712832|ref|YP_003738644.1| 337 HASSITKYQTTETLWTVLDRMVQIHGGAGVDGDLPLERWLRESRV 381
                                       *****************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3178.20
//
Query:       gi|300712833|ref|YP_003738645.1|  [L=258]
Description: 3-hydroxybutyryl-CoA dehydratase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-57  193.5   0.0    4.2e-57  193.3   0.0    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
    2.2e-37  129.3   0.2    6.1e-36  124.6   0.4    1.9  2  ECH_2     Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
       0.06   12.3   0.0      0.082   11.9   0.0    1.2  1  SDH_sah   Serine dehydrogenase proteinase
       0.19   12.0   0.0       0.42   10.9   0.0    1.6  1  DUF4841   Domain of unknown function (DUF4841)


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   0.0   9.3e-61   4.2e-57       1     250 [.       8     257 ..       8     258 .] 0.93

  Alignments for each domain:
  == domain 1  score: 193.3 bits;  conditional E-value: 9.3e-61
                                       EEETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHCHHHHHHHCC CS
                             ECH_1   1 eieagvaviklnrPeavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeekakqallkee 76 
                                       e+e+ +a i  nrPe+ Na++  +++ l +a+e++ +d  vra+vL G gd+ F aG+d+   a   + +  +++e+
  gi|300712833|ref|YP_003738645.1|   8 ERENDIATIIVNRPEKRNAMDIPTRKALYAAFEEVSEDDDVRAIVLRGaGDGSFIAGGDIDSFADFDHMDGMEYSEK 84 
                                       57899************************************************************998777788777 PP

                                       H.HHHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHH CS
                             ECH_1  77 v.lelwtklytvpkpviaavnGaaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeei 152
                                       + + l++ + +  kp+iaav G+a+gGG e+alacDi+ a d+a+fgl+e+ +G+ip+ ggtq+l++ vG  +A e+
  gi|300712833|ref|YP_003738645.1|  85 YaQGLYNYVADRHKPTIAAVDGYALGGGTEIALACDIRLATDDAKFGLPEVGIGVIPAGGGTQRLVQVVGAGLASEL 161
                                       62668999********************************************************************* PP

                                       HHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHC CS
                             ECH_1 153 lllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalrqlkealnakle.dalaeqleaeaklfestf 228
                                       +l+g+ isa+ea+++Gl ++v ++e++ +e +++ae la+k+p a r +ke++++ l+ da  e    e+     +f
  gi|300712833|ref|YP_003738645.1| 162 ILTGRIISADEAKRIGLANHVYAAEEFDNEVRAMAEDLASKAPVAQRLAKESIRRSLDiDAGLE---YERLAGAFLF 235
                                       ********************************************************99766555...4555555567 PP

                                       TSHHHHHHHHHHHTCSH----- CS
                             ECH_1 229 skddikeGlqaflEkrkpefed 250
                                        +dd keG +aflE r+p++++
  gi|300712833|ref|YP_003738645.1| 236 GTDDQKEGANAFLEDREPKYRN 257
                                       777889************9976 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.4   1.4e-39   6.1e-36       2     196 ..      14     206 ..      13     215 .. 0.89
   2 !    7.5   0.0   0.00055       2.5     247     318 ..     190     256 ..     184     258 .] 0.84

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 1.4e-39
                                       EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHH CS
                             ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYk 78 
                                       ++i+ nrp++ Na++ +  +al +a++e+++dd+v+++vl+gag+ +f AGgD+ ++++  + +  e    ++e+Y+
  gi|300712833|ref|YP_003738645.1|  14 ATIIVNRPEKRNAMDIPTRKALYAAFEEVSEDDDVRAIVLRGAGDGSFIAGGDIDSFADFDHMDGME----YSEKYA 86 
                                       6899*******************************************************99998777....444443 PP

                                       ..HHHHHHC-SS-EEEEE-BEEETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHH CS
                             ECH_2  79 ..lnyliatypkpvvalmdGivmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylal 152
                                         l +++a+ +kp++a +dG+++GgG+ +++ + +r +t++++f  PE++IG++P  Gg+  L ++ g  l+  l l
  gi|300712833|ref|YP_003738645.1|  87 qgLYNYVADRHKPTIAAVDGYALGGGTEIALACDIRLATDDAKFGLPEVGIGVIPAGGGTQRLVQVVGaGLASELIL 163
                                       3366899********************************************************9997769******* PP

                                       H---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT........- CS
                             ECH_2 153 TGarlkgadalaaglathyvpseklealeeaLaelessdeeave 196
                                       TG+ +++ +a  +gla+h+  +e++++  +a+ae   s ++ v+
  gi|300712833|ref|YP_003738645.1| 164 TGRIISADEAKRIGLANHVYAAEEFDNEVRAMAEDLAS-KAPVA 206
                                       *************************9888888875443.33333 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00055
                                       HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS-------S CS
                             ECH_2 247 ewakktletlkkrsPtslkvtleqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkdkkPkWk 318
                                       + +++++e l++++P++ +++ e++rr+ +   ++  l+ E  + + l+ ++D  eG +a l d+  +Pk++
  gi|300712833|ref|YP_003738645.1| 190 NEVRAMAEDLASKAPVAQRLAKESIRRSLD---IDAGLEYERLAGAFLFGTDDQKEGANAFLEDR--EPKYR 256
                                       5578899*******************8755...6799****8888888889**********9876..67775 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05     0.082     117     165 ..      95     143 ..      82     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.8e-05
                           SDH_sah 117 ehkaktrvivphyamsGGtlialaadeiildenavlGpvdpqlgqypaa 165
                                       + + +t   v  ya+ GGt iala d  +  ++a +G  +  +g +pa 
  gi|300712833|ref|YP_003738645.1|  95 DRHKPTIAAVDGYALGGGTEIALACDIRLATDDAKFGLPEVGIGVIPAG 143
                                       444567778999***************999999*999999999999886 PP

>> DUF4841  Domain of unknown function (DUF4841)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.3e-05      0.42      14      68 ..      10      61 ..       7      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.3e-05
                           DUF4841 14 esllaenpvvdesksieLeiPtavqtlYvqYptasGkkevkevpvkvstradksi 68
                                      e+ +a+++v   +k   ++iPt  ++lY+ ++ +s +  v+++++    ++d+s+
  gi|300712833|ref|YP_003738645.1| 10 ENDIATIIVNRPEKRNAMDIPTR-KALYAAFEEVSEDDDVRAIVLR--GAGDGSF 61
                                      6789*****************96.89*******************9..7888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2020.88
//
Query:       gi|300712834|ref|YP_003738646.1|  [L=487]
Description: aldehyde dehydrogenase (acceptor) [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-169  564.8   0.1   1.3e-169  564.6   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.6   0.1  7.2e-174  1.3e-169       4     462 .]      24     481 ..      21     481 .. 0.98

  Alignments for each domain:
  == domain 1  score: 564.6 bits;  conditional E-value: 7.2e-174
                                       -SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH- CS
                            Aldedh   4 sesetievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletG 80 
                                       +++eti+ ++ at+e++a+++a++a+d+d+a   A e   aw +++++eR+++L++aa l++++ke lael+t+e+G
  gi|300712834|ref|YP_003738646.1|  24 ESGETIPIVDSATEETFATIAAGGASDIDRAATVASESTTAWLEMSPPERGRVLNRAAMLIRKNKESLAELLTRENG 100
                                       34488************************************************************************ PP

                                       --HHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EE CS
                            Aldedh  81 kplaearaeveeaidvlryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtv 157
                                       kp+++ar+e+e  +++++yya++ +k++ge++p  +++  ++ rePlGv+g I+PWNfP++l+a+++ap laaGN+v
  gi|300712834|ref|YP_003738646.1| 101 KPISQARTEIEVGARYFEYYAGATDKIQGETIPLGREYVDFTIREPLGVTGHIVPWNFPVSLFARSVAPSLAAGNAV 177
                                       **********************************88***************************************** PP

                                       EEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEE CS
                            Aldedh 158 vlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtl 234
                                       v+KPae+tpl+++ l +l++eag+P+g +nvv+g+g+e+g+al++h ++ +++ftGs+++g+k+a++aa+++k v++
  gi|300712834|ref|YP_003738646.1| 178 VVKPAEQTPLTSVELGKLLDEAGIPDGTINVVPGYGAEAGAALTNHSDITAIAFTGSVPTGKKVAATAARQMKHVHI 254
                                       ***************************************************************************** PP

                                       EE---EEEEE-TTSHHHHHHHHHHHHHH.GGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB-- CS
                            Aldedh 235 ElGGknplivledaDldkaveaivkgaf.gnaGQvCiaasrllvqesiydefveklveaakklkvgdpldedtdvGP 310
                                       E GGknp++v++daDl++a+e+++ ++f +naGQvC+a+ rllv++++++ef+++lve++++l+vg +l+ d d+G+
  gi|300712834|ref|YP_003738646.1| 255 EAGGKNPNVVFPDADLEAAIEGTLISIFtRNAGQVCSAGDRLLVHKEVHEEFLKELVERVEALTVGPGLE-DPDIGA 330
                                       **********************999986379*************************************88.****** PP

                                       -SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHH CS
                            Aldedh 311 liseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeai 387
                                       l+se+q++kv+ky++ ++ e  + l+ g  +++++  gyfv Pt++++ ++d ria+eEiFGPVl+vi+f++e ea+
  gi|300712834|ref|YP_003738646.1| 331 LVSEEQYKKVRKYIKIGRRELGEPLVNGVPKNTDKMAGYFVGPTIFDDANNDLRIAREEIFGPVLTVIPFETETEAL 407
                                       **************************999999********************************************* PP

                                       HHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
                            Aldedh 388 eiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                                       eiaNd++yGL+ag+ft+dlera+r+a+++ aG+vyiN++ +g +e+ pfgG+++Sg+Gre+g e+l+++t++k+v
  gi|300712834|ref|YP_003738646.1| 408 EIANDSDYGLSAGIFTNDLERAHRFARDVIAGQVYINEWFAGGVET-PFGGHRESGFGREKGLEALDQFTTTKNV 481
                                       **********************************************.**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3739.04
//
Query:       gi|300712835|ref|YP_003738647.1|  [L=363]
Description: immunogenic protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-29  103.1   0.0    2.2e-29  102.8   0.0    1.0  1  NMT1_3      NMT1-like family
    0.00059   19.6   0.5     0.0011   18.7   0.5    1.5  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   2.4e-33   2.2e-29       1     287 [.      50     347 ..      50     348 .. 0.84

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 2.4e-33
                            NMT1_3   1 igTastgGtyYpvGvaiatliseklakdqkvkasaqssaGsveNiqllkkgeadlailqsdvayeAyeGegefegkk 77 
                                       igT +      + Gva +++i+e+    +++++saq+++G+  N +l+++g++d+a ++      A + eg++++  
  gi|300712835|ref|YP_003738647.1|  50 IGTSGEETATHASGVAFSSVINENS---DQIQMSAQTTGGTTANNRLVDQGQIDIAQTTHNLLWRANRDEGPYSEPP 123
                                       6788888888999********9885...57********************************************976 PP

                            NMT1_3  78 plknlraitmlyaevfqlv....vskdsgigsiadlk.gkrvsvGpegsGtegsarailealgls.ekdlklleelg 148
                                         k+l+  +++ +  + lv    +s+  g+++++dl  g+++s+Gp+g+++   a++ l+ +g++ ++++  ++ +g
  gi|300712835|ref|YP_003738647.1| 124 VEKTLCQTFSYMTLDIFLVkrqgASSLEGVTRVEDLPeGTNISFGPRGTSAWDMANDGLGLVGIDnSQEYFNVSTMG 200
                                       66789998888886666663433446679*******879*************************967889999**** PP

                            NMT1_3 149 ygesadalkdgqldgaalvaGvPv...savtqlaasediklipl..ddeqldkllkeypvftkyvipagtypq..de 218
                                        g++a+a+ +g++d+ +  ++      + ++ql a++d+++++   +++q+++ +   pv   + +p++t +q  ++
  gi|300712835|ref|YP_003738647.1| 201 LGDQATAMNEGRIDVCTCYTANQEtliGWIQQLDAQVDVDVLEWgiSADQANSADV--PVAV-TDVPGDTWNQeiSH 274
                                       ****************99988764223889**********9975115666666554..5544.66778887653655 PP

                            NMT1_3 219 d.ikTiavpnflvvradldeelvYeitkaifenldelnsihkaakeislekala.glp..vplHpGAerYYkE 287
                                       d  + +      v  +d+++el+Ye t+ +++n + + s+ + ++ + ++ a++  +p  vp+HpGAe+YYk+
  gi|300712835|ref|YP_003738647.1| 275 DpYTALPLGYTTVIPSDISQELAYEYTEILMNNVEGVRSASAVLERFGPDFATEwLQPsgVPVHPGAEQYYKD 347
                                       527778999999**************************************7665323356***********97 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.5   1.2e-07    0.0011       1      25 [.       6      30 ..       6      31 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-07
                        TAT_signal  1 klSRRdFLKgsAAaaAAaalggcaa 25
                                      k++RR+ +K+ +A+  +++l+gc++
  gi|300712835|ref|YP_003738647.1|  6 KFDRRSVIKTMGATVGMLGLAGCSG 30
                                      699********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2787.04
//
Query:       gi|300712836|ref|YP_003738648.1|  [L=248]
Description: short-chain dehydrogenase/reductase SDR [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-42  144.6   0.0    4.5e-42  144.2   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.5e-36  125.7   0.0    1.8e-36  125.5   0.0    1.0  1  adh_short     short chain dehydrogenase
    3.7e-06   27.0   0.0    9.4e-06   25.7   0.0    1.6  2  KR            KR domain
  ------ inclusion threshold ------
      0.061   12.3   0.8       0.43    9.5   0.3    2.0  2  IMPDH         IMP dehydrogenase / GMP reductase domain
      0.093   12.6   0.0       0.16   11.8   0.0    1.3  1  3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD binding do


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.0   1.3e-45   4.5e-42       3     232 ..      14     242 ..      12     243 .. 0.94

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 1.3e-45
                                       T..TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEE CS
                      adh_short_C2   3 a..sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilv 74 
                                       a  sg+G+a A +la++G +v++  ++e + +++veel e  + +v  +  D t+++++++lve++v++fg+lD lv
  gi|300712836|ref|YP_003738648.1|  14 AssSGLGKASAASLAKAGVDVIVNGRDEGRlENAVEELRETAEGQVigCVGDMTNPDDITRLVETTVDEFGRLDHLV 90 
                                       3459**************************9**********9999669999************************** PP

                                       E-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHH CS
                      adh_short_C2  75 nnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalea 150
                                        +ag  ++    f+et+++++  a d+ + s+++ +++ +p+++e  g i n++s+  + +   +   + ++  +++
  gi|300712836|ref|YP_003738648.1|  91 TSAGGPTR--YTFTETQDDDWYYAYDMLVMSVVRAVRESIPHLREVgGTITNITSMVTKEASGANVLSSSVRMCVQG 165
                                       ******99..*******************************776655*********99999999999********** PP

                                       HHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEE CS
                      adh_short_C2 151 ltrylAvelgpkgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtl 227
                                       l++ l  el+p +iRvN++ pg+  T+   ++ +         +  pl r+g+++e +++++fL+s  +sy tG+ +
  gi|300712836|ref|YP_003738648.1| 166 LAKVLSDELAP-EIRVNTILPGLYYTPRRHDAGE----AGVDLSDVPLDRMGEARELGDVVAFLCSGYSSYLTGAAI 237
                                       ***********.9***************988873....33445789******************************* PP

                                       EESTT CS
                      adh_short_C2 228 vvDgG 232
                                        +DgG
  gi|300712836|ref|YP_003738648.1| 238 PIDGG 242
                                       ***** PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.0     5e-40   1.8e-36       2     190 ..       9     196 ..       8     200 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 5e-40
                                       EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSS CS
                         adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgk 77 
                                       ++lv+  ssG+G+a a  lak+G++v+v +r e +le++++el+e+ + +++ + +D+t+ +++ +lve+ v+++g+
  gi|300712836|ref|YP_003738648.1|   9 AALVIASSSGLGKASAASLAKAGVDVIVNGRDEGRLENAVEELRETaEGQVIGCVGDMTNPDDITRLVETTVDEFGR 85 
                                       79*************************************************************************** PP

                                       ESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHH CS
                         adh_short  78 ldvLvnNAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKa 154
                                       ld Lv+ AG   + +f e+++++w   +++ +++v+ ++r+ +p+ l++ +G+I n++S+++k+++   +  s+   
  gi|300712836|ref|YP_003738648.1|  86 LDHLVTSAGGPTRYTFTETQDDDWYYAYDMLVMSVVRAVRESIPH-LREVGGTITNITSMVTKEASGANVLSSSVRM 161
                                       *********************************************.67***************************** PP

                                       HHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
                         adh_short 155 avagltrslakelaptgirvnavaPGlvdTdmakel 190
                                        v+gl++ l++elap+ irvn++ PGl  T+ ++++
  gi|300712836|ref|YP_003738648.1| 162 CVQGLAKVLSDELAPE-IRVNTILPGLYYTPRRHDA 196
                                       ***************8.************9988765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.6e-09   9.4e-06       4     108 ..      11     112 ..       9     121 .. 0.86
   2 ?   -1.8   0.0      0.69   2.5e+03      41      75 ..     124     158 ..     115     172 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.6e-09
                                       EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHS CS
                                KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaee 79 
                                       l++    gLG++ a  la+ g   +++ +R++    + ++ ++el+++ + +v  +  D +++d++++l+e+  +e+
  gi|300712836|ref|YP_003738648.1|  11 LVIASSSGLGKASAASLAKAGVD-VIVNGRDE---GRLENAVEELRETaEGQVIGCVGDMTNPDDITRLVETTVDEF 83 
                                       56666789***********9975.7789***3...34455788888875779999999******************* PP

                                       S---EEEE---------TTT--HHHHHHH CS
                                KR  80 ppikGvihaAgvlrdklleemtaedleqv 108
                                       +++   + +Ag     +++e++++d+  +
  gi|300712836|ref|YP_003738648.1|  84 GRLDHLVTSAGGPTRYTFTETQDDDWYYA 112
                                       *************************9766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.69
                                       HHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHH CS
                                KR  41 skaliaelealgaevevvaaDvsdkdavealleei 75 
                                        ++ i +l++ g +++ +   v+++++ +++l++ 
  gi|300712836|ref|YP_003738648.1| 124 VRESIPHLREVGGTITNITSMVTKEASGANVLSSS 158
                                       56677888888888888888888877777766654 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00012      0.43      95     168 ..      13      81 ..       3      83 .. 0.73
   2 ?    0.9   0.0      0.05   1.8e+02     130     167 ..     115     152 ..     109     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
                                       EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-S CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                             IMPDH  95 vgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagad 168
                                       ++++ g     ++ ++ l++agvdv+v    +g  e+ +e ++e  +    v   +G++++ + +++L+e+ +d
  gi|300712836|ref|YP_003738648.1|  13 IASSSGLG---KASAASLAKAGVDVIVNGRDEGRLENAVEELRETAEGQ--VIGCVGDMTNPDDITRLVETTVD 81 
                                       45555555...577899**********9998888777655555544333..444589***********999988 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.05
                                       HHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT- CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                             IMPDH 130 ekvleavkeikkkveeveviaGnvataegakaLieaga 167
                                         v+++v+++++++++++ ++G +++   + +  + ga
  gi|300712836|ref|YP_003738648.1| 115 MLVMSVVRAVRESIPHLREVGGTITNITSMVTKEASGA 152
                                       568999********99******9988766655555555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.5e-05      0.16      10      50 ..      19      59 ..      16      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.5e-05
                                      CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCT CS
                           3HCDH_N 10 mGagiaavfasagleVvlvdiseealekalekieksleklv 50
                                      +G+  aa +a+ag++V +  ++e +le+a e+++++ e +v
  gi|300712836|ref|YP_003738648.1| 19 LGKASAASLAKAGVDVIVNGRDEGRLENAVEELRETAEGQV 59
                                      69999*****************************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1775.60
//
Query:       gi|300712837|ref|YP_003738649.1|  [L=679]
Description: C4-dicarboxylate anaerobic carrier [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-59  202.5  41.0    1.7e-59  201.8  41.0    1.3  1  DctM      Tripartite ATP-independent periplasmic transporter,
  ------ inclusion threshold ------
       0.24   11.6   0.8        0.6   10.4   0.0    2.0  2  SbcCD_C   Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> DctM  Tripartite ATP-independent periplasmic transporter, DctM component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8  41.0   1.9e-63   1.7e-59       3     407 ..     110     587 ..     106     595 .. 0.90

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 1.9e-63
                              DctM   3 sllvllalgvpvaislalasl..lllallgelllgv............pleqilaqrvveglssfallaipfFvlaG 65 
                                       +l+++   ++  + +l ++++  l++a+ g   +++            + ++++ + v+++l ++a + i +F++++
  gi|300712837|ref|YP_003738649.1| 110 LLFIIDQSRRAFGNILPAVGVigLIYAIAGPYFPSIlrhggiefrrliTSQTVAFAGVYDTLVQVAATYIVIFIVFA 186
                                       566666678888999999999989999999998888999999776555444444444455666677777777***** PP

                              DctM  66 ivlersGlakrlidlaaalvGrvrGGlakvsvvgsalfgaiSGsavAnvaavGsitipamkrsGykrefaaaviaas 142
                                       ++le+ G+ + ++++ a++   v+ G+ +++vv+s+ +g++ Gsa+An+a++G++tip+mk++G  +e++aa+++ +
  gi|300712837|ref|YP_003738649.1| 187 AFLEAYGAMNYFVNIGAKVGSYVKSGITQTAVVTSVAMGSVNGSAAANAATTGAFTIPLMKNQGISKETSAAIESVA 263
                                       **************999988899****************************************************** PP

                              DctM 143 stlgqiiPPslglivfama.vlgvsigdlfaaaiipglllavglllavaiaakkenlrs.................. 200
                                       s +gqi+PP++g+++f+ma ++g+s+  +++ +++p+ll + ++++av++   ke+                     
  gi|300712837|ref|YP_003738649.1| 264 SSGGQIMPPIMGAAAFVMAeITGTSYLHIITIGLLPALLFYGTIAVAVHLITLKEGAGLtnledvgsdrdeskineg 340
                                       ***************************************************9999988889**************** PP

                              DctM 201 ....................ktkaelkrlgqalkeaipalllpliiligillgi.ftpteagavavvyalviallv. 255
                                                             +a++ +++++l +++ +l lp+ il++ l+ + + p  ag+++++  + +all  
  gi|300712837|ref|YP_003738649.1| 341 dktiedismgtttqpsdmsmLAEASQTSFLASLAKGM-YLWLPVSILVYTLVILqYDPVYAGFFSTLSIFPVALLQg 416
                                       ************9999999989999999999999999.*******99988877779*******************99 PP

                              DctM 256 .....yrrltleevaaallstaktt....aavlfilaaagifaglltltgvplklselllslsggkllfLi.lvnll 322
                                            ++++ +++  + ++++ ++     a +++++a   if+g+l  tg+ ++l++ l+slsgg+l +L+  ++  
  gi|300712837|ref|YP_003738649.1| 417 lyfgdDKKVAVRDFVENTIEGCRLGmsnaAPITLAVAVIAIFVGVLNQTGFTQALAQSLISLSGGELALLLfFAMFA 493
                                       9999988888888888888877776555599***********************************65555055666 PP

                              DctM 323 vlvlGmfldttaaiiilvpilaPaaaklgidpihfgvvivlnlsiglitPPvGlalfvassia.........kvsve 390
                                        ++ G++++t+aa+i+ v ++aPa+ +lg+    +++++++++ ++ itPPv++a  ++++i+         k  v+
  gi|300712837|ref|YP_003738649.1| 494 AILFGLGMPTVAAYIVAVLLIAPALVNLGVRLETAHFFVFYFAILSAITPPVAIACIITAEISkgnfwrvaaKSLVI 570
                                       7899****************************************************************998878888 PP

                              DctM 391 eivkalvPflvvlvval 407
                                       ++   l+P++++++ a+
  gi|300712837|ref|YP_003738649.1| 571 GMPLFLLPYVFIMNDAV 587
                                       88888999999998766 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2         1   9.1e+03      41      56 ..     179     194 ..     176     196 .. 0.79
   2 ?   10.4   0.0   6.7e-05       0.6      18      51 ..     463     496 ..     455     509 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1
                           SbcCD_C  41 laylalaaalaalyss 56 
                                       ++ ++++aa+  +y+ 
  gi|300712837|ref|YP_003738649.1| 179 IVIFIVFAAFLEAYGA 194
                                       5678999999999975 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.7e-05
                           SbcCD_C  18 dedgkekelsrssgtlSGGekqflaylalaaala 51 
                                       +++g ++ l +s  +lSGGe ++l+ +a++aa+ 
  gi|300712837|ref|YP_003738649.1| 463 NQTGFTQALAQSLISLSGGELALLLFFAMFAAIL 496
                                       67788888999999******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.34s 00:00:01.04 Elapsed: 00:00:00.49
# Mc/sec: 4161.70
//
Query:       gi|300712838|ref|YP_003738650.1|  [L=143]
Description: UspA domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-16   60.1   0.2    3.7e-16   59.9   0.2    1.1  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.2   2.1e-20   3.7e-16       4     138 ..       3     133 ..       1     136 [. 0.85

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 2.1e-20
                                       EEEEEE-SSHHHHHHHHHHHH..HHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
                               Usp   4 rIlVavDgseeskkAlewAle..lakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeag 78 
                                       ++++a+Dg +e   A   A++    ++ + e+ +++v ++  s++ +  + e++ +  e++  +l         + +
  gi|300712838|ref|YP_003738650.1|   3 TVVLATDGHKERVMAQVEAVAdyPCASEEIEVLIVNVAKEIQSDEGGKINIEEYADMPESASNALS------FFQSE 73 
                                       688999999999955555555474444678888888888888888888888888888888888774......579** PP

                                       TCEEEEEEEESSHHHHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEE CS
                               Usp  79 gvkvevvveegdpaeeilevaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVl 138
                                       g++ + ++++gdpaeei+++a++ da+ i++G r+rs + ++++GSv ++v+  a+cpVl
  gi|300712838|ref|YP_003738650.1|  74 GITARAEQRSGDPAEEIIRAARDADANQIILGGRKRSPVGKAVFGSVVQKVIFDAECPVL 133
                                       ***********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1025.09
//
Query:       gi|300712839|ref|YP_003738651.1|  [L=332]
Description: hypothetical protein HacjB3_17588 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 2253.73
//
Query:       gi|300712840|ref|YP_003738652.1|  [L=201]
Description: hypothetical protein HacjB3_17593 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      0.003   16.5   0.0      0.003   16.5   0.0    1.1  1  Kinesin      Kinesin motor domain
  ------ inclusion threshold ------
      0.079   12.9   0.0       0.12   12.2   0.0    1.3  1  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.4e-07     0.003      54     115 ..      68     131 ..      28     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.4e-07
                                       -HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC.TTTSBSHHHH.HHHHHHHHHH CS
                           Kinesin  54 tqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk.eeeeeGiipr.aleelFesik 115
                                         ++v +++a + + + l Gy a ++aYG  gs  ++Tm+ + + ee+G+    +++e F+++ 
  gi|300712840|ref|YP_003738652.1|  68 VYKDVATSAADEDIYEELLGYDAVLIAYGDCGSCSSWTMHDSfQLEEAGVPTVvFCTEEFTTLC 131
                                       3677778888888889999*********************998778889854414455555554 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05      0.12      79     103 ..      85     111 ..      70     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
                                       HTT--EEEEEEES.............. CS
                       Microtub_bd  79 ldgynvcifaygqTGsGKtyTmeg..e 103
                                       l gy+  ++ayg  Gs  ++Tm+   +
  gi|300712840|ref|YP_003738652.1|  85 LLGYDAVLIAYGDCGSCSSWTMHDsfQ 111
                                       679*******************98433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1490.26
//
Query:       gi|300712841|ref|YP_003738653.1|  [L=239]
Description: hypothetical protein HacjB3_17598 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1716.74
//
Query:       gi|300712842|ref|YP_003738654.1|  [L=397]
Description: formyl-CoA transferase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.5e-120  400.2   0.0   9.6e-120  400.1   0.0    1.0  1  CoA_transf_3  CoA-transferase family III
  ------ inclusion threshold ------
        0.2   11.9   0.0       0.37   11.0   0.0    1.4  1  DUF3045       Protein of unknown function (DUF3045)


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.1   0.0  1.1e-123  9.6e-120       1     368 []       8     373 ..       8     373 .. 0.98

  Alignments for each domain:
  == domain 1  score: 400.1 bits;  conditional E-value: 1.1e-123
                      CoA_transf_3   1 LaGvrVldlsqvlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlkseegre 77 
                                       L+ + V+dl+q++ Gp+++ lL+ +GA V+k+Epp  g+p+R    + ++ge+  f+++n nK++++l+lk++eg+e
  gi|300712842|ref|YP_003738654.1|   8 LDSIDVVDLGQIYNGPYCSLLLSYMGANVTKIEPP-HGEPLRDR--V-KDGEAPEFVMLNSNKEGMTLNLKTKEGKE 80 
                                       78899******************************.******85..3.4599************************* PP

                      CoA_transf_3  78 llkrLvakADVvieNfrpgvlerlglgyeelrainPrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsltgepdg 154
                                       ++k+L+++ADV+ieNf++g++erl lgy +l + nP+Liya+ sg+G++Gp++++p++Dl++qa+sG+m++tg p+g
  gi|300712842|ref|YP_003738654.1|  81 IFKELIEDADVLIENFSVGTMERLDLGYGDLTELNPELIYAHSSGFGEEGPYNEYPAMDLTIQAISGVMDVTGFPNG 157
                                       ***************************************************************************** PP

                      CoA_transf_3 155 pPvkvgvplgDivtgllaavailaallarertGkGqvidvslleaalallapqlleylatgevperqgnrdp..aaa 229
                                       pP+k+g+++gD+++g+++ +++l al++re tG+Gq ++vs+ ++++ +l   ++ ++++ +vp r+gnr+   a  
  gi|300712842|ref|YP_003738654.1| 158 PPTKAGIAVGDFMGGIHLLAGVLGALYERELTGEGQFVEVSMHDSVFPTLMSPMAAHFNDDNVPPRTGNRHSglAQS 234
                                       ************************************************************************88889 PP

                      CoA_transf_3 230 pygvyrtkdgwvaiaaatdkqwaalckalgrpelaedprfatnasrlenraeldaelaewlaertaaewlellaaag 306
                                       py+vy+t+dg++ai   t+++w++l++++gr++l++dprf++n +r+++ +e+d++++ w+ er++++++e+l +ag
  gi|300712842|ref|YP_003738654.1| 235 PYNVYETADGYIAIFGVTNRHWHSLLEVIGREDLKDDPRFESNVKRSNHLNEVDELVEGWTIERERDDIEETLLDAG 311
                                       9**************************************************************************** PP

                      CoA_transf_3 307 vpaapvntleevlddpqlaarglvvevddpdygevpvvglpvrlsetparvkraaPklGedt 368
                                       vp++pv++leev+ddp+l++rg++ e+d+pdyg++ v+glp+r+s+ +     + P  G+dt
  gi|300712842|ref|YP_003738654.1| 312 VPCGPVKKLEEVADDPHLKERGMINEIDHPDYGKISVPGLPIRFSGSDLPDIEPSPSKGRDT 373
                                       ************************************************99999999999997 PP

>> DUF3045  Protein of unknown function (DUF3045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.1e-05      0.37      32      79 ..      74     122 ..      65     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.1e-05
                           DUF3045  32 raqkderifkkcveqgfiyikhwmqgnkvrtty.hrsltelndeliynr 79 
                                       +++  + ifk  +e+  + i  +  g   r    +  lteln eliy  
  gi|300712842|ref|YP_003738654.1|  74 KTKEGKEIFKELIEDADVLIENFSVGTMERLDLgYGDLTELNPELIYAH 122
                                       5667789*******************99997652678**********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2964.04
//
Query:       gi|300712843|ref|YP_003738655.1|  [L=212]
Description: dimethylmenaquinone methyltransferase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-32  112.6   0.1    2.2e-32  112.3   0.1    1.1  1  RraA-like  Aldolase/RraA


Domain annotation for each model (and alignments):
>> RraA-like  Aldolase/RraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.1   1.2e-36   2.2e-32       1     150 []      14     169 ..      14     169 .. 0.92

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 1.2e-36
                                       HHHHHHHCEE-SSBST..B.TT.EE.S.EEEEEEEEEESS.BG.....HHHHHHHTS--TTEEEEEESTT.SSSSSE CS
                         RraA-like   1 tadvsDalkklggrsg..girpler.s.fvGpavTvkvveadn.....slvkealeeagpgdvlVvdgggdeslraa 68 
                                       t+ vsDal+k+ +     g+ p e+ +  vG+a T+++  adn     +  +++l+e  +++vlV+dg +     ++
  gi|300712843|ref|YP_003738655.1|  14 TSVVSDALDKYDIDGVitGLPPAESgQtAVGRAHTMRFEWADNpgkqtNFPYTMLNELLNDRVLVIDGVS--PDISC 88 
                                       5679*****999998887888877755666********99988777778999***************888..44899 PP

                                       CE-HHHHHHHHHTTBSEEEEEEEES-HHHHTTSSSEEEEEEE-SSB-B-S.STSEESS-EEETTEEE-TTSEEEEET CS
                         RraA-like  69 llGgllataakangvaGvvvdGavRDvaelreldfpvfargvtprkkpkkkgkgevnvpveiggvtvkpgdlivaDe 145
                                       + Gg+ +++a++ gv+Gvv++G  RD+ e+ e  fpvfar+ tp+  +++ + ++++ p+ei+gv+v+p+dli+aD+
  gi|300712843|ref|YP_003738655.1|  89 W-GGNASRLAENAGVSGVVINGGYRDIPEICEGAFPVFARQPTPKSGQYRLTVESIGEPLEIDGVVVNPEDLIIADA 164
                                       9.*******************************************999998999*********************** PP

                                       TEEEE CS
                         RraA-like 146 dGvvv 150
                                        Gvvv
  gi|300712843|ref|YP_003738655.1| 165 TGVVV 169
                                       ****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:01.08
# Mc/sec: 594.45
//
Query:       gi|300712844|ref|YP_003738656.1|  [L=46]
Description: hypothetical protein HacjB3_17613 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 363.21
//
Query:       gi|300712845|ref|YP_003738657.1|  [L=175]
Description: pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-14   54.1   0.0    1.8e-14   53.6   0.0    1.2  1  Putative_PNPOx   Pyridoxamine 5'-phosphate oxidase
    2.2e-08   34.2   0.2    4.5e-08   33.2   0.0    1.6  2  Pyridox_ox_2     Pyridoxamine 5'-phosphate oxidase
    2.3e-05   24.0   0.0    3.4e-05   23.5   0.0    1.3  1  Pyrid_ox_like    Pyridoxamine 5'-phosphate oxidase like
  ------ inclusion threshold ------
      0.028   14.9   0.0      0.042   14.3   0.0    1.2  1  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   4.1e-18   1.8e-14       2      87 ..       5      92 ..       3      93 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.1e-18
                                      HHHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETT...GSEEEEE CS
                    Putative_PNPOx  2 deelreflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallfldde...lgrgvri 77
                                      d+el+ fl+++++  +ATv+e+G P+v pv+++++d   ++++ t+   rk rn+  ++rv+l+ +  e   + rg+ +
  gi|300712845|ref|YP_003738657.1|  5 DAELEVFLESQRTLYIATVSENGWPHVAPVGFARLDNG-HFYVLTHPSQRKSRNIFYDNRVGLTADAGEsytSLRGMFV 82
                                      348999******************************99.******************************999999999* PP

                                      EEEEEEESCH CS
                    Putative_PNPOx 78 eGtaelvsdg 87
                                      +G a++v+d+
  gi|300712845|ref|YP_003738657.1| 83 HGYATVVTDD 92
                                      ********98 PP

>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0     1e-11   4.5e-08       1     113 [.       4     111 ..       4     132 .. 0.83
   2 ?   -2.6   0.0       1.1     5e+03      20      34 ..     149     163 ..     148     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1e-11
                                       -HHHHHHHHHC-SEEEEEEEETTE.EEEEEEEEEEE.TTEEEEEEETTSHCCHCCC.T--ECEEEEEEEEEEE-SEG CS
                      Pyridox_ox_2   1 dreeilalLdegevgrlafvddge.pvilPvnyvvd.gdslyfhgakgsrlaaalr.gapvcvvvtevdglvlarsf 74 
                                       d++e++ +L++++++ +a+v ++  p++ Pv +++  ++++y+ ++++ r+ + +  +++v  ++    g     + 
  gi|300712845|ref|YP_003738657.1|   4 DDAELEVFLESQRTLYIATVSENGwPHVAPVGFARLdNGHFYVLTHPSQRKSRNIFyDNRVGLTADA--G-----E- 72 
                                       789999***************8888********9864999**************9955556666655..2.....2. PP

                                       GEEE.EEEEEEEEEEEEE--HHHHHHHCCCHHHHHSTTTG CS
                      Pyridox_ox_2  75 nsln.yrSVvvrGraeevtdeeekaealellvekivpgrw 113
                                        s++  r   v+G+a++vtd++++ e+ ++ ve+++ g+ 
  gi|300712845|ref|YP_003738657.1|  73 -SYTsLRGMFVHGYATVVTDDQKRPELENAWVERFYDGEI 111
                                       .444488999***********************9977764 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
                                       EETTEEEEEEEEEEE CS
                      Pyridox_ox_2  20 vddgepvilPvnyvv 34 
                                       vd+++p   P++y++
  gi|300712845|ref|YP_003738657.1| 149 VDEDAPDGMPFSYGL 163
                                       67888999****986 PP

>> Pyrid_ox_like  Pyridoxamine 5'-phosphate oxidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   7.6e-09   3.4e-05      10     106 ..      12     109 ..       5     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 7.6e-09
                     Pyrid_ox_like  10 vkdiktamLttteadgklksrPMatqkveedgdlwfltkkdsdkvkeirkdsqvnlafsdeskkkyvs.....vsGt 81 
                                       +++ +t  ++t +++g  ++ P   ++ + +g+++ lt+ + +k ++i  d++v l+      ++y s     v+G 
  gi|300712845|ref|YP_003738657.1|  12 LESQRTLYIATVSENGWPHVAPVGFARLD-NGHFYVLTHPSQRKSRNIFYDNRVGLTADA--GESYTSlrgmfVHGY 85 
                                       56667777888888999999999988876.7*************************9965..566765222226789 PP

                     Pyrid_ox_like  82 aevvedrakieelWspvvkawfpeg 106
                                       a+vv+d +k  el +++v+ ++ +g
  gi|300712845|ref|YP_003738657.1|  86 ATVVTDDQKRPELENAWVERFY-DG 109
                                       *********************9.44 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   9.3e-06     0.042      13      53 ..      96     138 ..      87     147 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.3e-06
                                       HHHHTSGGGSSSSS-HHHHHHHHHHHHH-..S--S-GGGTS-- CS
                   Alkyl_sulf_dimr  13 eslanepylreyYGtvehnvraiyqrylG..WfdgnPanLnpl 53 
                                       ++l+n+++ r y G++   v+++y++  G  Wfd +P++   +
  gi|300712845|ref|YP_003738657.1|  96 PELENAWVERFYDGEIPDVVKKVYSKRDGwiWFDVEPVHTVTW 138
                                       689**************************667*****997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1266.24
//
Query:       gi|300712846|ref|YP_003738658.1|  [L=474]
Description: aspartyl/glutamyl-tRNA amidotransferase subunit A [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-89  299.8   0.0    4.5e-89  299.5   0.0    1.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.5   0.0   2.5e-93   4.5e-89      36     449 ..      68     461 ..      51     463 .. 0.90

  Alignments for each domain:
  == domain 1  score: 299.5 bits;  conditional E-value: 2.5e-93
                                       --TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT CS
                           Amidase  36 dkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefamgssten 112
                                       d+ r + +++gpL G+ +++KDni+vkg+++t+Gsk+le  +++ Dat   rL +aG  ++gk+nmd fa+g  +  
  gi|300712846|ref|YP_003738658.1|  68 DEPR-QRRTEGPLSGLSFVLKDNIAVKGLRMTCGSKILET-VPTIDATALNRLLDAGGSVVGKANMDAFAFGPGGLW 142
                                       4444.5789******************************9.9999******************************** PP

                                       -TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-E CS
                           Amidase 113 svfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldv 189
                                       s  g++rNP+d +r+pGG S+G+++avAagl+++++G+DtGGS+R PA++cg+vG+KPt+g+vSr+g v+   s d+
  gi|300712846|ref|YP_003738658.1| 143 SERGRVRNPIDADRIPGGTSSGCGVAVAAGLADVGLGSDTGGSVRSPAACCGVVGIKPTHGLVSRYGFVENVPSADT 219
                                       ***************************************************************************** PP

                                       EEEEESSHHHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHH CS
                           Amidase 190 vGplarsvedlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaL 266
                                       +Gplar+ve++a +l++i g+d +d+++s i   +  l  ++ +s + l+iGv++  ++ +++++v++a++++++ L
  gi|300712846|ref|YP_003738658.1| 220 IGPLARDVETAARVLEAIRGPDVHDPKTSAIN--VVPLN-RNIESFDSLQIGVLELEPH-DISAPVTEAIAELAADL 292
                                       *****************************975..44555.5555559***********7.***************** PP

                                       HCTT.-EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHH CS
                           Amidase 267 eeaG.hevvevelpsleealslyylilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgny 342
                                        ++  + v  v+l   e + ++y +i+ ae++  l+++ ++r     +  +  e+++    e l++++  r+  g+y
  gi|300712846|ref|YP_003738658.1| 293 DAESgVSVGSVNLDM-EDIEEAYSIISGAEFAWLLRQSFAQRG----GVPTPPEMISLVDGEALNDHIIGRLLPGAY 364
                                       987559999999865.556667999999999988887777755....66667788999999**********999995 PP

                                       HCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT CS
                           Amidase 343 alsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdktidsytvlynlldftavvvpvnlag 419
                                        l+a + + +y  aq+   +++++++ +fe++Dvll+Pt  t +p+ ++ +    +  + y + +        +la 
  gi|300712846|ref|YP_003738658.1| 365 -LDALTDGRAYALAQEQVVAFKHTLKTYFERFDVLLTPTLRTLPPKPEQLRDS--EGGFNYTIAKQF------SLAE 432
                                       .677778999**************************************99863..466666666666......9*** PP

                                       --EEEEECCCCT.TECEEEEEEESTT-HHH CS
                           Amidase 420 lpalsvpagksedglPvGvqvigkafqeet 449
                                       +pa+svp+++++ glPv+ q+ +++f+++t
  gi|300712846|ref|YP_003738658.1| 433 TPAVSVPFTERD-GLPVSAQLLAPQFEDRT 461
                                       *********985.***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3542.20
//
Query:       gi|300712847|ref|YP_003738659.1|  [L=359]
Description: major facilitator superfamily MFS_1 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-44  150.2  70.8      6e-38  130.7  44.0    1.9  2  MFS_1       Major Facilitator Superfamily
    1.3e-10   40.7  22.7    1.6e-08   33.8   9.9    2.6  3  MFS_1_like  MFS_1 like family
    0.00017   20.6  13.1    0.00017   20.6  13.1    2.5  2  Sugar_tr    Sugar (and other) transporter
      0.002   17.0   8.4      0.002   17.0   8.4    2.9  3  LacY_symp   LacY proton/sugar symporter
  ------ inclusion threshold ------
        3.4    7.4  12.0        1.8    8.3   2.3    2.6  2  DUF3464     Photosynthesis affected mutant 68


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7  44.0   1.7e-41     6e-38      18     350 ..       2     320 ..       1     323 [. 0.81
   2 !   33.1  18.8   7.5e-12   2.7e-08      37     169 ..     223     354 ..     223     359 .] 0.93

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 1.7e-41
                             MFS_1  18 alplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrv 93 
                                       +lp +l  ++ +s +++g+ll+l   ++av++lp+G l+d+fG rr+l ++ ++++++ +++++ a+s w+l+v+  
  gi|300712847|ref|YP_003738659.1|   2 LLP-FLRGTYDLSLTAAGFLLSLLWMAYAVGQLPGGILADKFGERRILTISTIISSIAiAFVAA-ATSTWVLFVSTT 76 
                                       578.99****************************************************444444.58889******* PP

                             MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfll 170
                                       l Glg++++  +  +++++++p  + g+aig+ +a+  +G ++ p+++g++a  + W+++f i+ ++++l++v   l
  gi|300712847|ref|YP_003738659.1|  77 LFGLGTALYGVSRFTALSEIYPN-KDGSAIGVTMAAGEAGNVVMPAIAGVVA-VVAWQLSFGIAIPLFVLVGVS--L 149
                                       **********************9.****************************.889***************996..8 PP

                             MFS_1 171 llpeepperkrkspkeeekgtgpaplvp.awkallkdpvlwillialllfffgfsglltllplylqevlglsgllla 246
                                       +l++++ +   +s ++     +  + +  ++ ++ ++  l+ + +  +l+  ++++++ + p+yl ev g+s    a
  gi|300712847|ref|YP_003738659.1| 150 WLFVPEQTADDDSAVDS----VSLESARyVLAEISRPSILL-VGLLQILGYSIWQAFTGFYPTYLIEVKGFS-SSVA 220
                                       88888888888888888....44444444556777777443.33333333447777****************.6888 PP

                             MFS_1 247 glllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpslla 323
                                       ++l+al+++vg+ +++l+g   dr+g  r+l l ++l++l+ +++ ++  +   ++++++ ++++  lg   +  l+
  gi|300712847|ref|YP_003738659.1| 221 AGLFALFFAVGILVQPLSGNAYDRIGLNRILPLLMGLTALGMFFVSFVESF---WAVVVITITLSSLLGQ-ATVTLS 293
                                       889*********************997666666666666655555555555...3333344444444444.566677 PP

                             MFS_1 324 lasdlappeeagtasglfntagslgga 350
                                       ++++ +p++++gt +g++ t++   ga
  gi|300712847|ref|YP_003738659.1| 294 YITSALPRDMRGTGLGAIRTVYMGLGA 320
                                       77777789***********88874444 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 7.5e-12
                             MFS_1  37 lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliad 112
                                       l++l++++ ++ +++ G   dr+G  r+l l + l+alg+++ +f+ s+w ++++   l++l +   +++ +++i+ 
  gi|300712847|ref|YP_003738659.1| 223 LFALFFAVGILVQPLSGNAYDRIGLNRILPLLMGLTALGMFFVSFVESFWaVVVITITLSSLLG--QATVTLSYITS 297
                                       689************************************6666689****99***********7..999999***** PP

                             MFS_1 113 wfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfl 169
                                         p++ rg ++g + + +    +  p+l g++a+ + +   f +l iv++ ++vl l
  gi|300712847|ref|YP_003738659.1| 298 ALPRDMRGTGLGAIRTVYMGLGAASPILFGAFADRGFFDEGFAVLSIVAATVCVLSL 354
                                       ******************9999******************************99733 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   3.5   9.2e-06     0.033     254     345 ..      13     100 ..       5     112 .. 0.89
   2 !   33.8   9.9   4.5e-12   1.6e-08     187     366 ..     141     323 ..     103     331 .. 0.80
   3 ?    1.2   0.0     0.035   1.3e+02      49      84 ..     321     356 ..     320     358 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.2e-06
                        MFS_1_like 254 elgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgll 330
                                       +l a ++ll+ l++  +v+++p    +  l +k+G +++l+i+ ++  +    +a+ +++w++++  +L g+ ++l+
  gi|300712847|ref|YP_003738659.1|  13 SLTAAGFLLSLLWMAYAVGQLP----GGILADKFGERRILTISTIISSIAIAFVAAATSTWVLFVSTTLFGLGTALY 85 
                                       6789999999999999999999....78899********************************************99 PP

                        MFS_1_like 331 waaaveyvskiapks 345
                                        ++  +  s+i p++
  gi|300712847|ref|YP_003738659.1|  86 GVSRFTALSEIYPNK 100
                                       888888888888865 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 4.5e-12
                        MFS_1_like 187 aallvisllvvlilnetekesklkvtksl....qvllnilknpeviifllvalilgmswgiienFlflYL.kelgas 258
                                       + +lv ++l  l ++e+++ ++ +v  +     + +l+ +++p+++++ l  ++   +w ++  F+  YL + +g+s
  gi|300712847|ref|YP_003738659.1| 141 LFVLVGVSLW-LFVPEQTADDDSAVDSVSlesaRYVLAEISRPSILLVGLLQILGYSIWQAFTGFYPTYLiEVKGFS 216
                                       3333333333.34444444444333333345656777888999999999999999999******************* PP

                        MFS_1_like 259 ntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaav 335
                                       ++++  l al  +  i +  ++ +  +++G+ ++l + + +++l  + ++++e++w v++i +  +  +g    +  
  gi|300712847|ref|YP_003738659.1| 217 SSVAAGLFALFFAVGILVQPLSGNAYDRIGLNRILPLLMGLTALGMFFVSFVESFWAVVVITITLSSLLGQA-TVTL 292
                                       ***********************************************************9998877778877.6889 PP

                        MFS_1_like 336 eyvskiapksleatgqgllsglyfglGralG 366
                                       +y+  + p+ +++tg g + ++y+glG a+ 
  gi|300712847|ref|YP_003738659.1| 293 SYITSALPRDMRGTGLGAIRTVYMGLGAASP 323
                                       ***************************9975 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.035
                        MFS_1_like  49 lsppiwgvlaDrfgkrkkvvilslllsavlflsllf 84 
                                       +sp ++g+ aDr    +  ++ls+++++v++lsl f
  gi|300712847|ref|YP_003738659.1| 321 ASPILFGAFADRGFFDEGFAVLSIVAATVCVLSLRF 356
                                       689999**************************9975 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6  13.1   4.8e-08   0.00017      47     193 ..      16     155 ..       7     158 .. 0.75
   2 ?    0.8   6.1     0.048   1.7e+02     255     335 ..     189     266 ..     155     353 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.8e-08
                                       HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHH CS
                          Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlv 123
                                         g+++s++    ++G+l +g+l+d+fG + +l i++++++i+++  aaa+   s++vl+v+  l G+g  l  v  
  gi|300712847|ref|YP_003738659.1|  16 AAGFLLSLLWMAYAVGQLPGGILADKFGERRILTISTIISSIAIAFVAAAT---STWVLFVSTTLFGLGTALYGVSR 89 
                                       568899999999***************************************...9*************999888888 PP

                                       HHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH.HHHGGGS-- CS
                          Sugar_tr 124 PmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpalll.lilllflPE 193
                                        + +sEi p k  +a+++    + +   ++ ai g+    +   + w++ +g+++ + +l+ + l+lf+PE
  gi|300712847|ref|YP_003738659.1|  90 FTALSEIYPNKDGSAIGVTMAAGEAGNVVMPAIAGV--VAV---VAWQLSFGIAIPLFVLVgVSLWLFVPE 155
                                       888889988876666665544443333333333222..223...347777777776655542455677776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.048
                                       HHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHH CS
                          Sugar_tr 255 lligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmai 329
                                       ll ++++ i+q +tG     +y+++++e  g+s s  +   +++ +v +++   +    dr+G  ++l l +   a+
  gi|300712847|ref|YP_003738659.1| 189 LLQILGYSIWQAFTG-----FYPTYLIEVKGFSSSvaAGLFALFFAVGILVQPLSGNAYDRIGLNRILPLLMGLTAL 260
                                       344455556666666.....677777777777777322222334445555555555666666665555444444444 PP

                                       HHHHHH CS
                          Sugar_tr 330 cfvilg 335
                                        +++++
  gi|300712847|ref|YP_003738659.1| 261 GMFFVS 266
                                       444444 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   4.9     0.011        41      34     192 ..       6     157 ..       2     184 .. 0.61
   2 !   17.0   8.4   5.7e-07     0.002      13     120 ..     188     296 ..     176     301 .. 0.85
   3 ?   -2.8   0.1      0.56     2e+03     370     397 ..     327     354 ..     323     356 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.011
                         LacY_symp  34 lkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnilvGalvG 110
                                       l++  +ls t  G + s + +   + q   G++ dk+G ++ l  +is+++  +a  + +v +      ++v     
  gi|300712847|ref|YP_003738659.1|   6 LRGTYDLSLTAAGFLLSLLWMAYAVGQLPGGILADKFGERRIL--TISTIISSIA--IAFVAAATSTWVLFVS---- 74 
                                       6666777777778888877777777777778888888877644..5555544444..3334333332222222.... PP

                         LacY_symp 111 gvflGlvy.sagagaieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllll 186
                                       +  +Gl+  + g +   a  e    +     G + + G  G  +  ++aG++  +  +l+f +a    +++ + l+l
  gi|300712847|ref|YP_003738659.1|  75 TTLFGLGTaLYGVSRFTALSEIYPNKDGSAIGVTMAAGEAGNVVMPAIAGVVAVVAWQLSFGIAIPLFVLVGVSLWL 151
                                       22233322123445555555666666666777777788888888888888888888888888877777777777777 PP

                         LacY_symp 187 skpdks 192
                                       + p+++
  gi|300712847|ref|YP_003738659.1| 152 FVPEQT 157
                                       766543 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.7e-07
                         LacY_symp  13 alffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkk..ellwvislllvlf 87 
                                       +l   + + i+ a+  ++p +l ev+g+s +    +f+    + il qpl G   d++Gl++  +ll  ++ l ++f
  gi|300712847|ref|YP_003738659.1| 188 GLLQILGYSIWQAFTGFYPTYLIEVKGFSSSVAAGLFALFFAVGILVQPLSGNAYDRIGLNRilPLLMGLTALGMFF 264
                                       556677899***************************************************99445677788888877 PP

                         LacY_symp  88 apfliyvfepllqlnilvGalvGgvflGlvysa 120
                                         f+   f  ++ + i++ +l+G   + l y +
  gi|300712847|ref|YP_003738659.1| 265 VSFV-ESFWAVVVITITLSSLLGQATVTLSYIT 296
                                       7765.56777889999******99998888876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.56
                         LacY_symp 370 GklydkvGfqtaylvlgiivlsltlisv 397
                                       G + d+  f++ + vl+i+  ++ ++s+
  gi|300712847|ref|YP_003738659.1| 327 GAFADRGFFDEGFAVLSIVAATVCVLSL 354
                                       5566676788999999999999999986 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.3    0.0005       1.8      79     142 ..      54     117 ..      46     123 .. 0.67
   2 ?    4.6   1.5    0.0068        24      61     114 ..     243     294 ..     229     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0005
                           DUF3464  79 vvfylivskelvdlptwvvllvslvlFglg..vlGls.YGvlSasWdeereGsllGleefkknwgrl 142
                                       + + +i+  ++  + ++ vl+vs+ lFglg  + G+s + +lS  + +++ Gs +G++ ++   g++
  gi|300712847|ref|YP_003738659.1|  54 ISSIAIAFVAA--ATSTWVLFVSTTLFGLGtaLYGVSrFTALSEIY-PNKDGSAIGVTMAAGEAGNV 117
                                       44444443333..334456667777776652278**8799999999.99********9887766665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0068
                           DUF3464  61 rRvalfsGiPlalGlatfvvfylivskelvdlptwvvllvslvlFglgvlGlsY 114
                                        R++l   +Pl++Gl+++ +f++  +++ + +  + + l s  l+g + + lsY
  gi|300712847|ref|YP_003738659.1| 243 DRIGLNRILPLLMGLTALGMFFVSFVESFWAVVVITITLSS--LLGQATVTLSY 294
                                       578888889*************9999999998777777766..57899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2775.40
//
Query:       gi|300712848|ref|YP_003738660.1|  [L=321]
Description: Alcohol dehydrogenase GroES domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-13   50.8   0.0    8.4e-13   49.5   0.0    1.7  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
      5e-11   42.7   0.0    1.4e-10   41.2   0.0    1.8  2  ADH_zinc_N    Zinc-binding dehydrogenase
    9.1e-10   38.4   0.0    2.2e-08   33.9   0.0    2.2  2  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.052   13.4   0.1        0.1   12.5   0.1    1.5  1  ETF           Electron transfer flavoprotein domain
       0.15   12.0   0.0       0.35   10.8   0.0    1.6  1  ADH_N_2       N-terminal domain of oxidoreductase


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.1   7.6e+03      23      36 ..      62      75 ..      45     144 .. 0.65
   2 !   49.5   0.0   2.3e-16   8.4e-13       2     133 .]     187     319 ..     186     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.1
                                      EEEEEES-HHHHH. CS
                      ADH_zinc_N_2 23 vDvvldtvggeall 36
                                      +  v+++vg + ++
  gi|300712848|ref|YP_003738660.1| 62 FAGVVESVGDHVTA 75
                                      55555555533332 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 2.3e-16
                                       T-SEEEETTSTTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--G CS
                      ADH_zinc_N_2   2 GAdevidyrtedfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyefl 78 
                                       GAd v+ y+++++++++  + vDv++d    e+l    + + + gGr+v+++g    +++ + a++ ++++++++++
  gi|300712848|ref|YP_003738660.1| 187 GADTVLRYDDPELQESV-DQPVDVIVDHRIDEYL-GFDIGISAFGGRIVQYAGE---DGDFEGAREGRSKNLSLHMM 258
                                       9************9888.678*******776766.6666667677*******73...44444444444444444444 PP

                                       GG...-........-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
                      ADH_zinc_N_2  79 fsmkas.......aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                                         m++        +  + l  +++l++ G ++p + + ++l+eaae hr++ + + +GK+V+
  gi|300712848|ref|YP_003738660.1| 259 N-MSNLasrsdttNISEPLSSVLELVARGVINPQIHQNYSLDEAAEMHRAILEDSFIGKLVV 319
                                       4.4444667888966666*******************************************8 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.86   3.1e+03      52      71 ..      56      74 ..      40      86 .. 0.74
   2 !   41.2   0.0     4e-14   1.4e-10       1     116 [.     154     262 ..     154     284 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.86
                                      HHTTTSSEEEEEESSCSHHH CS
                        ADH_zinc_N 52 eltggegvdvvfecvGsgat 71
                                      + t g ++  v+e vG++ t
  gi|300712848|ref|YP_003738660.1| 56 KTT-GSDFAGVVESVGDHVT 74
                                      556.7789999999995544 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 4e-14
                                       HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHH CS
                        ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalk 77 
                                       gvG++avql +al   +i+++++ee  + a ++Gad v+ y +   + +++e   +++vdv++++    + l   + 
  gi|300712848|ref|YP_003738660.1| 154 GVGHLAVQLSAALSTDTITTVGTEEAERAATEFGADTVLRY-D---DPELQESV-DQPVDVIVDHRI-DEYLGFDIG 224
                                       9****************************************.3...68999999.88**********.********* PP

                                       CEEEEEEEEECSCTSSEEEEEHHHHH.HTT-EEEEE-SSC CS
                        ADH_zinc_N  78 llkpgGrlvvvGggkgeeefdlrnll.lkeksilGsllgs 116
                                       + + gGr+v ++g ++++ f  ++    k++s+   ++++
  gi|300712848|ref|YP_003738660.1| 225 ISAFGGRIVQYAG-EDGD-FEGAREGrSKNLSLHMMNMSN 262
                                       ************6.4444.444444435555555555554 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   6.2e-12   2.2e-08       2      61 ..      28      84 ..      27      91 .. 0.92
   2 ?    2.8   0.0     0.029   1.1e+02      91     106 ..      93     108 ..      83     111 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 6.2e-12
                                      TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE CS
                             ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvv 61
                                      +e+l+ v+aa+i+ +D +  +     + +lp + G +++G+ve+vg++v+ ++ GdrV+ 
  gi|300712848|ref|YP_003738660.1| 28 DELLVAVRAASINPTDAKRRQW---GPKHLPKTTGSDFAGVVESVGDHVTAFESGDRVCG 84
                                      689**************99987...699******************************86 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.029
                                       S-SSSBSEEEECGGGE CS
                             ADH_N  91 ldGgfaeyvvvpekkl 106
                                       ++G+f+eyv+vp++ +
  gi|300712848|ref|YP_003738660.1|  93 QQGSFQEYVTVPTDIV 108
                                       79*********98755 PP

>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.8e-05       0.1      24      85 ..     159     215 ..     151     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.8e-05
                                       HHHHHHHHT--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHH CS
                               ETF  24 ArrlkekaggevtavvvGppeaeealrealaamGadkvilvddpalagydaeatakalaali 85 
                                       A++l +++  + t  +vG+   eea ++a+ + Gad+v+  ddp+l+++  +++  ++   i
  gi|300712848|ref|YP_003738660.1| 159 AVQLSAAL-STDTITTVGT---EEA-ERAATEFGADTVLRYDDPELQESVDQPVDVIVDHRI 215
                                       77776655.5557778899...555.666666**************9988777766665555 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.8e-05      0.35      10      92 ..       7      86 ..       2      96 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.8e-05
                           ADH_N_2 10 egaptesdfeleeeelpelkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveS...knpdfkvG 85
                                      + a  +s +ele ++ p++k +e+lv ++  S+ P+   r +   + ++      + +g+  + VveS   +  +f+ G
  gi|300712848|ref|YP_003738660.1|  7 HEAGAPSVLELEAVDRPTPKGDELLVAVRAASINPTDAKRRQWGPKHLP------KTTGSDFAGVVESvgdHVTAFESG 79
                                      555667899**************************98777666666333......334555555555522144577888 PP

                           ADH_N_2 86 dlVvgll 92
                                      d V+g +
  gi|300712848|ref|YP_003738660.1| 80 DRVCGTG 86
                                      8887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2374.04
//
Query:       gi|300712849|ref|YP_003738661.1|  [L=317]
Description: L-lactate dehydrogenase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-17   63.8   0.0    2.5e-16   60.1   0.0    2.2  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
    6.2e-16   58.8   0.0    1.3e-15   57.8   0.0    1.4  1  Ldh_1_C          lactate/malate dehydrogenase, alpha/beta C-t
    0.00061   19.5   2.6    0.00075   19.2   1.5    1.5  1  DAO              FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.046   14.0   0.1        0.1   12.8   0.1    1.6  1  TrkA_N           TrkA-N domain
      0.055   12.3   0.2      0.074   11.9   0.2    1.1  1  Trp_halogenase   Tryptophan halogenase
       0.11   12.7   0.2       0.32   11.3   0.2    1.8  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.22   10.7   0.5       0.39    9.9   0.5    1.4  1  Thi4             Thi4 family


Domain annotation for each model (and alignments):
>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   9.7e-20   2.5e-16       3     141 .]       3     157 ..       1     157 [. 0.83

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 9.7e-20
                                       EEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS.............-EEEEESSGGG CS
                           Ldh_1_N   3 vavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsv.............kvkvsekeeea 66 
                                       v+v+G +G++G+++a++l  +  a +++L+D + +++eG+a+d+ h    ++              +v+v e   ++
  gi|300712849|ref|YP_003738661.1|   3 VVVIGGGGTVGSTVAYTLSVQIPATNVTLVDTDIDAAEGHAIDIRHSMCHATYglgrpdfaseplgSVHVAEPSPSV 79 
                                       99*******************88888*******************9876554311111111222224667778899* PP

                                       GTTESEEEE--S-SS.-TTTT...HHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHHTS-GGGE CS
                           Ldh_1_N  67 lkdadvvvitagvpr.kpGet...RddLlkvNakIvkeiveaiakvapnaivlvvsNPvdiltevlkkasglpkkrv 139
                                       ++++d+ v+ta++pr k+G     R+  l++N +Iv +i++ +++  p   v+vvsNPvd +t+ l+ ++g p++r 
  gi|300712849|ref|YP_003738661.1|  80 VSESDCLVVTASAPRpKDGDArggRLTFLERNLEIVDNIAAWLNEADP-TPVIVVSNPVDRITHRLWRQTGWPRQRF 155
                                       **************9788998777899*************99998666.5789********************9998 PP

                                       EE CS
                           Ldh_1_N 140 ig 141
                                       +g
  gi|300712849|ref|YP_003738661.1| 156 LG 157
                                       76 PP

>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0     5e-19   1.3e-15       5     153 ..     163     310 ..     162     316 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 5e-19
                                       HHHHHHHHHHHHTS-GGGEE--EEBSSST..ETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS- CS
                           Ldh_1_C   5 ivRaktflaekagvtprsvkvtViGgHsg..vtiipllsqvkellklsekqleeliervqnggdevvkakkGagsat 79 
                                       ++R    +a +++ +pr+v  +++G+H++  v i     ++ e +++se + ++++e v++  ++v k +  + s+ 
  gi|300712849|ref|YP_003738661.1| 163 TARIADEIARQTDASPREVYCPILGEHGEhiVPIFSRATVSGEPVNFSESERDDIVEYVRDVPYDVLKLRGAQDSSR 239
                                       5789999********************986666666666777889*************************9999*** PP

                                       HHHHHHHHHHHHHHHTTH.TEEEEEEEEEESCCCECCSSEEEEEEEEEEETTEEEEE-------HHHHHHHHHHH CS
                           Ldh_1_C  80 lsmAvAgakfveallrdt.keilsagvyldgevglkdqeieyfsvPvvlgknGvekvleilklndfeeekleksv 153
                                         +A  +a +v+ l +d   + +  ++ l+ge+g+kd   + +svPv+l k+Gv +++e  +l ++e+ +le++ 
  gi|300712849|ref|YP_003738661.1| 240 WVTARGVASVVQRLDDDCaDALVCLSTPLEGEYGFKD---VSLSVPVRLDKDGVANIVE-WSLVEEERTALEDAY 310
                                       *****************97778899************...9******************.9********999875 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.5   2.9e-07   0.00075       1      46 [.       2      53 ..       2      68 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.9e-07
                                      EEEEEC.TSHHHHHHHHHHHHT.T...EEEEESSSSTTS.SGGGSSEEEEES CS
                               DAO  1 dvviiG.GGiiGlstAyeLarr.g...Vtllekgdiags.gaSgrnsgllhs 46
                                      dvv+iG GG +G+++Ay L+ + +   Vtl++ + +a++ +a      ++h+
  gi|300712849|ref|YP_003738661.1|  2 DVVVIGgGGTVGSTVAYTLSVQiPatnVTLVDTDIDAAEgHAIDIRHSMCHA 53
                                      8999996889*********97666789*******555543554444555555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     4e-05       0.1       1      38 [.       4      43 ..       3      55 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
                                      EEEES-SHHHHHHHHHHHHTT..EEEEEEESSHHHHHHHH CS
                            TrkA_N  1 iiiiGlGrvGrslaeeLsegg..kdvvvidkdeerveelr 38
                                      ++i G G+vG+++a +Ls +    +v+++d+d +++e ++
  gi|300712849|ref|YP_003738661.1|  4 VVIGGGGTVGSTVAYTLSVQIpaTNVTLVDTDIDAAEGHA 43
                                      67889************99767877********9998765 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   2.9e-05     0.074       2      33 ..       4      34 ..       2      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
                                      EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
                    Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlves 33
                                      +vi GGGt G+++A +l+ ++   ++vtlv+ 
  gi|300712849|ref|YP_003738661.1|  4 VVIGGGGTVGSTVAYTLSVQIPA-TNVTLVDT 34
                                      6777899**************55.9****986 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00012      0.32       1      39 [.       3      41 ..       3      55 .. 0.85
   2 ?   -2.8   0.0       2.8   7.1e+03      26      47 ..     104     125 ..      88     144 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                                      EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHH CS
                   Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklea 39
                                      v++iG+ G vG+ va  l+ + + + ++t++d + + +e 
  gi|300712849|ref|YP_003738661.1|  3 VVVIGGgGTVGSTVAYTLSVQIPAT-NVTLVDTDIDAAEG 41
                                      7999999*************99985.******99988765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
                                       EEEEEESSHHHHHHHHCHHTTT CS
                   Sacchrp_dh_NADP  26 eitvadrskeklealaakalgv 47 
                                       ++t  +r++e ++++aa++++ 
  gi|300712849|ref|YP_003738661.1| 104 RLTFLERNLEIVDNIAAWLNEA 125
                                       5566666666666666655433 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   0.00015      0.39      19      52 ..       2      37 ..       1      44 [. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00015
                                      EEEEE.--SHHHHHHHHHHHHC.TTS-EEEEESSSS CS
                              Thi4 19 Dvviv.GaGssGLtaayylakk.pdlkvailersvs 52
                                      Dvv++ G+G+ G t ay+l+ + p  +v++++  + 
  gi|300712849|ref|YP_003738661.1|  2 DVVVIgGGGTVGSTVAYTLSVQiPATNVTLVDTDID 37
                                      77665167789**********99****999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2459.69
//
Query:       gi|300712850|ref|YP_003738662.1|  [L=405]
Description: CAIB/BAIF family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-111  373.4   0.0   1.3e-111  373.3   0.0    1.0  1  CoA_transf_3  CoA-transferase family III


Domain annotation for each model (and alignments):
>> CoA_transf_3  CoA-transferase family III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.3   0.0  7.4e-116  1.3e-111       1     367 [.       9     375 ..       9     376 .. 0.97

  Alignments for each domain:
  == domain 1  score: 373.3 bits;  conditional E-value: 7.4e-116
                      CoA_transf_3   1 LaGvrVldlsqvlaGplatslLAdlGAeVIkvEppkkgDpaRkvgpseekgesayflavnrnKrsvalDlkseegre 77 
                                       L+++ V++l++++ +p+a+ lLAdlGA+V+k+E+p+ gD +R  g     +++a+++a+nrnKrs+alDl+s+ gr+
  gi|300712850|ref|YP_003738662.1|   9 LSDISVIELGNIVSAPFASLLLADLGADVVKIERPGVGDLMRSAGE----SGEAVVNALNRNKRSLALDLQSDRGRK 81 
                                       899***************************************9975....677************************ PP

                      CoA_transf_3  78 llkrLvakADVvieNfrpgvlerlglgyeelrainPrLiyasvsgyGqsGpkakrpgyDlvaqaasGlmsltgepdg 154
                                       + ++L+ +ADVvieN+ pgv++rl++gy++l+a+n +L+y+s++g+  sGp+ +rpg+D+va+++sGl+++tg+p+g
  gi|300712850|ref|YP_003738662.1|  82 AYHDLASEADVVIENLGPGVADRLKIGYDDLKARNTDLVYLSIKGFH-SGPYGDRPGMDMVAESMSGLAAMTGNPGG 157
                                       **********************************************9.7**************************** PP

                      CoA_transf_3 155 pPvkvgvplgDivtgllaavailaallarertGkGqvidvslleaalallapqlleylatgevperqgnrdpaaapy 231
                                        Pv+vg++++Di +++++++++l al++r+rtGkGq +d++l+e+a++++++ ++ + +tg+   + g ++pa   y
  gi|300712850|ref|YP_003738662.1| 158 GPVRVGTSIADIGSAMYGVIGVLTALRERDRTGKGQLVDATLFESAAQWMGYWMTFADMTGQDHPPLGTSHPAFSLY 234
                                       *********************************************************9999999999********** PP

                      CoA_transf_3 232 gvyrtkdg..wvaiaaatdkqwaalckalgrpelaedprfatnasrlenraeldaelaewlaertaaewlellaaag 306
                                       ++++t d   wv++++++d++w a+c+a++rp+l +d rf+t +sr e++ el    +e l   +++e++++l a+g
  gi|300712850|ref|YP_003738662.1| 235 DIFETTDSdrWVFVGVTSDRHWPAFCEAVDRPDLLADRRFETPESRFEHESELVSIAREELTGWNREELVDALLAEG 311
                                       *****77778******************************************************************* PP

                      CoA_transf_3 307 vpaapvntleevlddpqlaarglvvevddpdyge...vpvvglpvrlsetparvkraaPklGed 367
                                       vpaapvn+++e+l+d++l ++g+++++   + g    +++v++p++ ++  ++ +   P+lGe+
  gi|300712850|ref|YP_003738662.1| 312 VPAAPVNKPSELLNDEHLEESGMIITFGGYHNGMekrLRTVKTPLSGDRIATEQRLDTPRLGEH 375
                                       **************************98777444458**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3143.10
//
Query:       gi|300712851|ref|YP_003738663.1|  [L=179]
Description: Carboxymuconolactone decarboxylase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-09   36.5   0.9    2.6e-07   30.6   0.0    2.1  2  CMD       Carboxymuconolactone decarboxylase family
  ------ inclusion threshold ------
      0.085   13.0   0.0        0.2   11.8   0.0    1.7  1  Death     Death domain


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.9e-11   2.6e-07       1      81 [.      38     116 ..      38     120 .. 0.84
   2 !    4.5   1.0    0.0039        35      43      82 ..     126     165 ..     108     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.9e-11
                                       HHHHHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHH CS
                               CMD   1 pellraltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaar 77 
                                       p++l+ +++++  l++ ++gL+  + e  +l ++++++ +y+++ H+ +A++ Gv++ +i + +++  ++ + ++  
  gi|300712851|ref|YP_003738663.1|  38 PDILQSYMRYGTTLWQ-NSGLNGDDLERCILSIARTLDAAYEWNQHVPIARNLGVSDADIEA-ITIENFDYFDDRRA 112
                                       8999**********99.999****************************************95.55544444545555 PP

                                       HHHH CS
                               CMD  78 aAla 81 
                                       a l+
  gi|300712851|ref|YP_003738663.1| 113 ALLR 116
                                       5555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0039
                                       HHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHH CS
                               CMD  43 vdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaa 82 
                                       vd  t aAl  +v++  i  +   a  y +++++++Al++
  gi|300712851|ref|YP_003738663.1| 126 VDNETYAALAEHVDKATIVGATQLATHYLATARFLDALEI 165
                                       5666899******************************987 PP

>> Death  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05       0.2      21      51 ..      85     116 ..      68     142 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
                                       HHHHTTSHHHHHHHHHHSS.STHHHHHHHHHH CS
                             Death  21 larkLglseeeidrieken.nslrsqsyalLq 51 
                                       +ar+Lg+s+ +i+ i  en +   ++  alL+
  gi|300712851|ref|YP_003738663.1|  85 IARNLGVSDADIEAITIENfDYFDDRRAALLR 116
                                       79*****************9999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1287.32
//
Query:       gi|300712852|ref|YP_003738664.1|  [L=158]
Description: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-52  176.4   0.1    6.9e-52  176.3   0.1    1.0  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.1   3.8e-56   6.9e-52      51     217 ..       2     155 ..       1     156 [. 0.97

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 3.8e-56
                                       S-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE-SBGGG---.HHHHHHTGGGEEEEEE-B--B- CS
                     FAA_hydrolase  51 rPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsaRdlqaeekaplgwflgksfdtftpiGpwivt 127
                                       +Pag ++l+yE+ELavvigk++r+v + +++++++ Gyt +nD+s Rd q+ e+   + +++k+fd+++p+Gp+++t
  gi|300712852|ref|YP_003738664.1|   2 LPAGKKRLEYEAELAVVIGKQCRHV-EENKVMEVVEGYTCMNDISNRDDQQIEQ---NYVRAKGFDGAAPLGPVVTT 74 
                                       699**********************.9**************************9...99****************** PP

                                       .STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES.......S--EE--TT-EEE CS
                     FAA_hydrolase 128 pdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgaeeeslkflkdgDeve 204
                                       pd+++d  d  +r+rvnge++qd+++ d+ifs++el+a+++  +tLe+Gd+++tGTp+gvg        l+dgDeve
  gi|300712852|ref|YP_003738664.1|  75 PDNVPD--DAFVRTRVNGEQKQDGKLTDLIFSVPELVAEITTYMTLEAGDIVSTGTPKGVG-------PLADGDEVE 142
                                       ****76..99*************************************************98.......5******** PP

                                       EEETTTEEEEEEE CS
                     FAA_hydrolase 205 veieglGelrnrV 217
                                       veieg+G+l++ V
  gi|300712852|ref|YP_003738664.1| 143 VEIEGIGTLQHSV 155
                                       ***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1121.96
//
Query:       gi|300712853|ref|YP_003738665.1|  [L=412]
Description: orc1/cdc6 family replication initiation protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-17   61.1   0.0    1.9e-16   59.8   0.0    1.8  1  Cdc6_C           CDC6, C terminal winged helix domain
    6.6e-12   45.9   0.0    1.6e-11   44.7   0.0    1.6  1  AAA_22           AAA domain
      1e-10   42.3   0.9    6.1e-10   39.7   0.1    2.5  2  AAA_16           AAA ATPase domain
    3.2e-06   27.2   0.0    7.4e-06   26.0   0.0    1.6  1  NACHT            NACHT domain
      4e-06   27.3   0.0    9.9e-06   26.0   0.0    1.7  1  AAA              ATPase family associated with various cellul
    1.2e-05   25.3   0.0    2.7e-05   24.2   0.0    1.5  1  ATPase_2         ATPase domain predominantly from Archaea
    9.5e-05   21.7   0.0    0.00034   19.9   0.0    1.8  2  NB-ARC           NB-ARC domain
    9.7e-05   21.9   0.0    0.00017   21.1   0.0    1.3  1  TniB             Bacterial TniB protein
    0.00049   19.7   0.0    0.00082   18.9   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
    0.00058   20.2   0.0     0.0016   18.8   0.0    1.7  1  RNA_helicase     RNA helicase
     0.0011   18.1   0.0     0.0019   17.4   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
      0.003   17.6   0.0     0.0056   16.7   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0047   16.9   0.0      0.013   15.5   0.0    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0067   15.3   0.1       0.89    8.3   0.0    2.2  2  AAA_32           AAA domain
  ------ inclusion threshold ------
      0.013   16.0   0.0      0.039   14.5   0.0    1.9  1  AAA_18           AAA domain
      0.018   14.0   0.0      0.039   12.9   0.0    1.5  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.019   14.6   0.5      0.099   12.2   0.0    2.3  2  AAA_25           AAA domain
      0.031   14.0   0.0      0.058   13.1   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
      0.046   14.2   0.0        0.2   12.2   0.0    2.0  2  ABC_tran         ABC transporter
      0.054   13.3   0.1        3.9    7.2   0.0    2.4  2  DEAD             DEAD/DEAH box helicase
      0.071   13.2   0.0       0.23   11.5   0.0    1.8  2  DUF87            Helicase HerA, central domain
      0.076   12.9   0.0        5.8    6.8   0.0    2.5  2  APS_kinase       Adenylylsulphate kinase
      0.082   12.2   0.0       0.29   10.4   0.0    1.8  2  Zeta_toxin       Zeta toxin
      0.088   12.8   0.1       0.22   11.5   0.1    1.6  1  AAA_14           AAA domain
       0.11   12.3   0.0       0.46   10.2   0.0    1.8  2  AAA_30           AAA domain
       0.11   12.4   0.0       0.27   11.2   0.0    1.6  1  ResIII           Type III restriction enzyme, res subunit
       0.12   12.3   0.0       0.22   11.4   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
       0.17   11.6   0.0       0.34   10.7   0.0    1.5  1  PduV-EutP        Ethanolamine utilisation - propanediol utili


Domain annotation for each model (and alignments):
>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   2.9e-19   1.9e-16       1      80 [.     303     383 ..     303     387 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2.9e-19
                                       HHHHHHHHCHCSSS-EEHHH..HHHHHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEEE-CC.C-EEEEEEES CS
                            Cdc6_C   1 Lcalvlllrksgkeevttge..vyevYkslCesegvdpltqrevsdllseLemlgileleksskGrregrtrkisLn 75 
                                       L+a+v+ +  s+  +v++++  +ye+Y +l   ++ dpl  r ++++l+eL+mlgil+++k+++Gr++g +++++++
  gi|300712853|ref|YP_003738665.1| 303 LLAVVSSTV-SDPSSVPLQKqsIYEQYCDLSHATDQDPLGGRAFHNHLAELSMLGILDRRKRNEGRGGGIYYEYEID 378
                                       789999999.888888888777******************************************************* PP

                                       SSCHH CS
                            Cdc6_C  76 vdpdd 80 
                                       v+ + 
  gi|300712853|ref|YP_003738665.1| 379 VSMKA 383
                                       99765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   2.4e-14   1.6e-11       4     117 ..      48     167 ..      44     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 2.4e-14
                            AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelka...erlsse 76 
                                       + ++++++G +G+GKT + + ll+ l+++a + +  +++ v+ ++  +tss  ++  l+++l  +++     +  + 
  gi|300712853|ref|YP_003738665.1|  48 QPRHVFLYGKTGVGKTAVTKYLLQHLEQDATQYDdLQVQSVYLNCEDLTSSYRIAVSLVNDLRAPNNQisrTGYPLN 124
                                       67899*********************988777779999999***************************998888888 PP

                            AAA_22  77 ellealeqalraravielliiDEaqhlr.seealeeL.rslln 117
                                       +++++l++ l++ + + l+++DE++++   + +l +L r ++n
  gi|300712853|ref|YP_003738665.1| 125 AVYDMLWEKLDEIGGTILVVLDEVDYIGdDDSILYQLpRARSN 167
                                       999999999999999************5548888888777777 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   9.5e-13   6.1e-10       4      66 ..      28      98 ..      25     172 .. 0.73
   2 ?   -1.0   0.1       3.2     2e+03      80     105 ..     248     273 ..     210     353 .. 0.55

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 9.5e-13
                            AAA_16  4 GReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekd.......ggiflrgkcdqlesa 66
                                       Reee+e+++++l++v  g+  + v+l+G  GvGK+++ + ll++le+d        +  ++ +c++l+s+
  gi|300712853|ref|YP_003738665.1| 28 EREEEVERFTAYLQPVINGSQpRHVFLYGKTGVGKTAVTKYLLQHLEQDatqyddlQVQSVYLNCEDLTSS 98
                                      5*************99999888***************************6666644344466666666333 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.2
                            AAA_16  80 ellrqlldeaesaeleawrekleeal 105
                                       +  + l+  +e+ +l++ r   + + 
  gi|300712853|ref|YP_003738665.1| 248 SARQGLDLLLEAGDLARRRSDQQVTE 273
                                       44344444444433333333322222 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.2e-08   7.4e-06       1      98 [.      50     156 ..      50     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.2e-08
                                       SCEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC.-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C..... CS
                             NACHT   1 rlvilqGeaGsGKTtLlqklalawaegklpqga.fklvFflslrelsrsgnarsladllfsqlpepaapvse..... 71 
                                       r v+l G+ G+GKT+  + l + + ++  + +     + +l++ +l+ s    ++a  l+ +l +p+ ++s+     
  gi|300712853|ref|YP_003738665.1|  50 RHVFLYGKTGVGKTAVTKYLLQHLEQDATQYDDlQVQSVYLNCEDLTSSY---RIAVSLVNDLRAPNNQISRtgypl 123
                                       5799**********98888888888877666553344789*******995...677777777777777777777778 PP

                                       ......CHHHHCCSCCCEEEEEE-STT-SS-TC CS
                             NACHT  72 ......vwavllelperlLlilDglDelvtdlg 98 
                                              w+ l e+   +L +lD +D++ +d++
  gi|300712853|ref|YP_003738665.1| 124 navydmLWEKLDEIGGTILVVLDEVDYIGDDDS 156
                                       88777799999999**************99876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.5e-08   9.9e-06       1     128 [.      52     203 ..      52     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.5e-08
                                       EEEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS................STTHHHHHHHHHHH CS
                               AAA   1 vllyGppGtGKTllakavakel..........gvefleisgsellsk................yvgesekkirelfk 51 
                                       v lyG  G+GKT++ k + ++l          +v+ + +++ +l+s+                 ++ +   ++++ +
  gi|300712853|ref|YP_003738665.1|  52 VFLYGKTGVGKTAVTKYLLQHLeqdatqyddlQVQSVYLNCEDLTSSyriavslvndlrapnnQISRTGYPLNAVYD 128
                                       679******************755444444446889*********889*****999999999988888888888888 PP

                                       HHHHTS....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESS...GGGSTHHHHS CS
                               AAA  52 eakeka....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr...pdkldpallr 121
                                        + ek     ++  +++DE+d ++ ++         +++ qL ++ ++ k +++++ +ig++n+    +kldp +  
  gi|300712853|ref|YP_003738665.1| 129 MLWEKLdeigGTILVVLDEVDYIGDDD---------SILYQLPRARSNGKIENARIGIIGISNDfkfREKLDPRVED 196
                                       875555678677999********8888.........99*************************98877888887775 PP

                                       TTSSEEE CS
                               AAA 122 gRfdrki 128
                                         ++r++
  gi|300712853|ref|YP_003738665.1| 197 TLCEREL 203
                                       5555555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.2e-08   2.7e-05      10     203 ..      39     219 ..      27     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.2e-08
                          ATPase_2  10 eleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesis.kldefieeeeekkklekalgia 85 
                                       +l+ +++ ++ + +f+YG  g+GKta+ k +++ le+   +   y++l+ +s   + ++      ++ +++  l ++
  gi|300712853|ref|YP_003738665.1|  39 YLQPVINGSQPRHVFLYGKTGVGKTAVTKYLLQHLEQ---DATQYDDLQVQSVYlNCEDL----TSSYRIAVSLVND 108
                                       45667778889999********************966...56778888876654144444....6666677777666 PP

                          ATPase_2  86 vpkaeleeilkeksklvfkaielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnliesltkekhlcvvi 162
                                       ++  +  +i +++   +++  + l ek+ + g  i +++De+ +++      + + +++L ++  +   e+  + +i
  gi|300712853|ref|YP_003738665.1| 109 LRAPNN-QI-SRTGYPLNAVYDMLWEKLDEIGGTILVVLDEVDYIG-----DDDSILYQLPRARSNGKIENARIGII 178
                                       666555.33.456666688899999999999999************.....47899999999999988888888888 PP

                          ATPase_2 163 clsSeglfiervyneselegrhkyilvddldketalnflke 203
                                         s +  f+e+++ + e     + ++  + d e  +n+l++
  gi|300712853|ref|YP_003738665.1| 179 GISNDFKFREKLDPRVEDTLCERELHFPPYDAEDLRNILQK 219
                                       88888888887777766666666666666666666666665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.4e-07   0.00034       5     126 ..      33     162 ..      29     170 .. 0.74
   2 ?   -1.4   0.0       1.7   1.1e+03      92     131 ..     209     247 ..     186     249 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.4e-07
                                       HHHHHHHHHC.TTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT....EEEEEEEESXXHHHHHHHXXHHHH CS
                            NB-ARC   5 vekviekLle.kdelqslvvalvGmgGvGKttlakqilnksdevegrFd....svawvvvsktdkseeiletilkeL 76 
                                       ve+    L    +++q   v+l+G+ GvGKt + k  l+++++   ++d      +++   +  +s++i  +++++L
  gi|300712853|ref|YP_003738665.1|  33 VERFTAYLQPvINGSQPRHVFLYGKTGVGKTAVTKYLLQHLEQDATQYDdlqvQSVYLNCEDLTSSYRIAVSLVNDL 109
                                       5555555554445666679******************************653223566778889999********** PP

                                       HCCCTTSSSS-STTS.HHHHHHHHCCCT..TEEEEEEEE-SHHHH.....HHH CS
                            NB-ARC  77 slseddleekeeves.lkrklvrlLltk..rfllvlDDVweeedwdkigvvlp 126
                                          +++++      +   ++l + L +     l+vlD V    d d+i   lp
  gi|300712853|ref|YP_003738665.1| 110 RAPNNQISRTGYPLNaVYDMLWEKLDEIggTILVVLDEVDYIGDDDSILYQLP 162
                                       88877777766555468899999998766699999999966666566655555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
                                       HHHHHHHHCCCTTEEEEEEEE-SHHHH.....HHHHCHTT CS
                            NB-ARC  92 lkrklvrlLltkrfllvlDDVweeedwdkigvvlparenr 131
                                        +++l+++L++ r  l +DD + + d   +++++ a++++
  gi|300712853|ref|YP_003738665.1| 209 DAEDLRNILQK-RAELAFDDNVLNGDVIPLCAAFAAQDKG 247
                                       57889998875.5556677766666655788888888776 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.6e-07   0.00017      31     129 ..      45     149 ..      26     153 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.6e-07
                              TniB  31 krkrmpnlllvGdsnnGKtmivekFarlhppekd..edaekvpvlvvqappkpdekrlyaaiLealgaplkara... 102
                                       + ++++++ l+G++ +GKt++ + +  +h +++    d+ +v+ +++++ +  +  r+  ++++ l+ap ++     
  gi|300712853|ref|YP_003738665.1|  45 NGSQPRHVFLYGKTGVGKTAVTK-YLLQHLEQDAtqYDDLQVQSVYLNCEDLTSSYRIAVSLVNDLRAPNNQISrtg 120
                                       4567889************9765.66666655541155568999*************************87666222 PP

                              TniB 103 .rvskleqqvlrllrelkvrvLi.iDEih 129
                                         +++ +++  + l+e++  +L+ +DE++
  gi|300712853|ref|YP_003738665.1| 121 yPLNAVYDMLWEKLDEIGGTILVvLDEVD 149
                                       24567888888889999888875279987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.3e-06   0.00082      32      69 ..      48      85 ..      31     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.3e-06
                             AAA_7 32 nkkpvllvGptGtGKtviikdllkkldkekylsltinf 69
                                      + ++v+l+G+tG+GKt+++k ll++l+++ +++  +++
  gi|300712853|ref|YP_003738665.1| 48 QPRHVFLYGKTGVGKTAVTKYLLQHLEQDATQYDDLQV 85
                                      5689***********************99887766655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.5e-06    0.0016       1      48 [.      52     100 ..      52     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.5e-06
                      RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsvysrnpeddfwdgYt 48 
                                       ++lyG++g+GK+ ++k+L ++l+++    ++ + +svy   + +d  ++Y+
  gi|300712853|ref|YP_003738665.1|  52 VFLYGKTGVGKTAVTKYLLQHLEQDAtqyDDLQVQSVYL--NCEDLTSSYR 100
                                       689********************7665557777788887..4455556665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.9e-06    0.0019      26      81 ..      22      77 ..       8     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.9e-06
                            DUF815 26 klddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg 81
                                      + ++L + +++ e++++  +  ++g + ++v+L+G+ G+GK ++ k ll++++++ 
  gi|300712853|ref|YP_003738665.1| 22 QPQSLEEREEEVERFTAYLQPVINGSQPRHVFLYGKTGVGKTAVTKYLLQHLEQDA 77
                                      5677888888888888889999****************************998876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.8e-06    0.0056       3      45 ..      29      75 ..      27      88 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.8e-06
                                      SHHHHHHHHHHHHHCH....TEEEEEEESTTSSHHHHHHHHHHHTT- CS
                              TsaE  3 seeetealgkklakal....gdvilLeGdLGaGKTtlvrglakalgv 45
                                      +eee+e++ + l+ ++     + ++L+G+ G+GKT+ ++ l+++l+ 
  gi|300712853|ref|YP_003738665.1| 29 REEEVERFTAYLQPVIngsqPRHVFLYGKTGVGKTAVTKYLLQHLEQ 75
                                      57888889999988777544446********************9975 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     2e-05     0.013       1      29 [.      51      80 ..      51     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2e-05
                                      EEEEE--SSSSHHHHHHHGGGGB.S--EEE CS
                             AAA_5  1 dvlLvGppGtgKselaerlaaal.nrevey 29
                                      +v+L G++G+gK+ ++++l++ l ++ ++y
  gi|300712853|ref|YP_003738665.1| 51 HVFLYGKTGVGKTAVTKYLLQHLeQDATQY 80
                                      79*********************7555544 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0014      0.89      32      64 ..      51      83 ..      46      91 .. 0.92
   2 ?    4.8   0.0     0.015       9.7     479     508 ..     251     280 ..     237     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0014
                            AAA_32 32 NifvlGesgtGrttlvkrlleeiakkeptpdDw 64
                                      ++f+ G++g+G+t ++k ll++ ++++ + dD+
  gi|300712853|ref|YP_003738665.1| 51 HVFLYGKTGVGKTAVTKYLLQHLEQDATQYDDL 83
                                      8**********************9999999986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.015
                            AAA_32 479 eiadllrEAdywakkegaevveaehVekAl 508
                                       +  dll EA  +a+++++++v++ hV++A 
  gi|300712853|ref|YP_003738665.1| 251 QGLDLLLEAGDLARRRSDQQVTEPHVREAK 280
                                       5579***********************995 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.1e-05     0.039       1      24 [.      52      75 ..      52     147 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.1e-05
                            AAA_18  1 IlltGtpGvGKttlakeLskrlgf 24
                                      ++l G+ GvGKt ++k+L ++l+ 
  gi|300712853|ref|YP_003738665.1| 52 VFLYGKTGVGKTAVTKYLLQHLEQ 75
                                      799***************887633 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.1e-05     0.039       8      42 ..      42      76 ..      37      80 .. 0.86
   2 ?   -3.8   0.0       7.1   4.6e+03     247     272 ..     143     168 ..     141     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.1e-05
                     TrwB_AAD_bind  8 plpkeretqhilivGttGsGKtqalekllrairar 42
                                      p+ + +  +h+++ G tG GKt +++ ll+++++ 
  gi|300712853|ref|YP_003738665.1| 42 PVINGSQPRHVFLYGKTGVGKTAVTKYLLQHLEQD 76
                                      566677889********************998875 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.1
                     TrwB_AAD_bind 247 fflDElpaLgrleelksllaegRkfG 272
                                       ++lDE++ +g  +++   l ++R+ G
  gi|300712853|ref|YP_003738665.1| 143 VVLDEVDYIGDDDSILYQLPRARSNG 168
                                       789******99999999999999988 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015     0.099      36     151 ..      52     148 ..      27     156 .. 0.79
   2 ?   -1.1   0.2       1.9   1.2e+03      78     132 ..     209     278 ..     208     294 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
                            AAA_25  36 allaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagve 112
                                       + l+G +g+GKt+++  l  ++ ++      +   q+  +y+++Ed  +  r  ++ +  +lr++ +    ++    
  gi|300712853|ref|YP_003738665.1|  52 VFLYGKTGVGKTAVTKYLLQHLEQDATQ---YDDLQVQSVYLNCEDLTSSYRIAVS-LVNDLRAPNNQISRTG---- 120
                                       579******************9987744...4457************966666555.5567766666644432.... PP

                            AAA_25 113 slpLfakdrggtlltadvdaleaaieevegvrlvviDpl 151
                                         p          l+a++d l ++++e+ g  lvv+D +
  gi|300712853|ref|YP_003738665.1| 121 -YP----------LNAVYDMLWEKLDEIGGTILVVLDEV 148
                                       .22..........58999999999999999999999976 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.9
                            AAA_25  78 saEdsedelrrRlravgeal...................rddarllvldlagveslpLfakdrggtlltadvda 132
                                       +aEd ++ l++R++ ++ ++                   +++++l++l        +L+  +++++++++ v++
  gi|300712853|ref|YP_003738665.1| 209 DAEDLRNILQKRAELAFDDNvlngdviplcaafaaqdkgSARQGLDLLLE----AGDLARRRSDQQVTEPHVRE 278
                                       68888889999998888887666666666666666554433444444432....33455555555555555555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.1e-05     0.058      10      53 ..      35      80 ..      26     101 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.1e-05
                                      HHHHHHHHHCTSS..S-EEEECSTTSSHHHHHHHHHHHSTTTTS-E CS
                   Sigma54_activat 10 elleqikkvaktd..lsvlitGesGtGKellaraiheaskrkekpf 53
                                      + ++ ++ v++ +   +v++ G++G+GK+ + + + ++ +++++++
  gi|300712853|ref|YP_003738665.1| 35 RFTAYLQPVINGSqpRHVFLYGKTGVGKTAVTKYLLQHLEQDATQY 80
                                      55555555554333389*****************998655554433 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00031       0.2      12     112 ..      50     168 ..      45     182 .. 0.60
   2 ?   -1.0   0.0       3.5   2.2e+03      94     126 ..     280     313 ..     210     337 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00031
                                       SEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG......B-HHHCCHCEEEE-SS--S-TTSBHHHH... CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF
                          ABC_tran  12 ekvaivGenGaGKStLlkllagllkpteGeilldgkdlke......qeleslrkeigvlpqepqlfpeltvren... 79 
                                       + v + G++G GK+ + k l+++l+++    ++d+ ++++      + ++s+r  ++ +      ++++   ++   
  gi|300712853|ref|YP_003738665.1|  50 RHVFLYGKTGVGKTAVTKYLLQHLEQD--ATQYDDLQVQSvylnceDLTSSYRIAVSLVNDLRAPNNQI--SRTgyp 122
                                       57899****************999864..3444555555555444333344444555444443333333..222355 PP

                                       .............HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HH CS
                                       .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                          ABC_tran  80 .............esdeeiekalsklglkelkdtvvksspssLSgG 112
                                                    e    i  +l++++ ++++d+++++ p+  S G
  gi|300712853|ref|YP_003738665.1| 123 lnavydmlwekldEIGGTILVVLDEVDYIGDDDSILYQLPRARSNG 168
                                       6666666654333333336667777777666666666666666655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.5
                                       TGGTTCBGESTTSGGS.-HHHHHHHHHHHHHHHT CS
                                       xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
                          ABC_tran  94 lkelkdtvvksspssL.SgGqkqrvalarallkk 126
                                        + l+++++++s+++L S+G+   +a++ + +++
  gi|300712853|ref|YP_003738665.1| 280 KQLLEKQRIEESMKELtSHGHLTLLAVVSSTVSD 313
                                       2224455555555333355665555555555444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0061       3.9      13      38 ..      48      72 ..      37      91 .. 0.74
   2 ?    3.5   0.0     0.085        55     119     154 ..     137     166 ..     117     182 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0061
                                      TTCEEEEEESTTSSHHHHHHHHHHHH CS
                                      xxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              DEAD 13 gggdvlvaaeTGsGKTlaflipvlqi 38
                                      + ++v++ ++TG GKT++    +lq+
  gi|300712853|ref|YP_003738665.1| 48 QPRHVFLYGKTGVGKTAVT-KYLLQH 72
                                      45899***********994.334444 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.085
                                       CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCT CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              DEAD 119 lsqvrflVlDEadrlldqgfsdfinrilnqlpqitc 154
                                       +    ++VlDE+d + d+      ++il qlp++ +
  gi|300712853|ref|YP_003738665.1| 137 IGGTILVVLDEVDYIGDD------DSILYQLPRARS 166
                                       667779********9998......344445555555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00036      0.23      24      47 ..      50      73 ..      43      80 .. 0.91
   2 ?   -2.0   0.0       4.8   3.1e+03     196     196 ..     302     302 ..     250     400 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00036
                             DUF87 24 rHlAilgsTGsGKSntvavLleel 47
                                      rH+   g+TG+GK+  +++Ll+ l
  gi|300712853|ref|YP_003738665.1| 50 RHVFLYGKTGVGKTAVTKYLLQHL 73
                                      8********************987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.8
                             DUF87 196 k 196
                                        
  gi|300712853|ref|YP_003738665.1| 302 T 302
                                       2 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0091       5.8       3      41 ..      50      88 ..      48      98 .. 0.84
   2 ?    3.6   0.0     0.088        57      56      89 ..     281     314 ..     242     341 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0091
                                      EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
                        APS_kinase  3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41
                                        v+l G +g GK+++++ l ++L+++ ++   L+ ++v
  gi|300712853|ref|YP_003738665.1| 50 RHVFLYGKTGVGKTAVTKYLLQHLEQDATQYDDLQVQSV 88
                                      5799*********************99988877766655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.088
                                       HHHHHHHHHHHHHHHHHTT-EEEEE----SHHHH CS
                        APS_kinase  56 RkenirrvaevaklladaglivlvafisPyreeR 89 
                                          + +r+ e  k+l+ +g+++l a++s   ++ 
  gi|300712853|ref|YP_003738665.1| 281 QLLEKQRIEESMKELTSHGHLTLLAVVSSTVSDP 314
                                       455679*********************9876665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00046      0.29      11      41 ..      44      74 ..      35      89 .. 0.86
   2 ?   -1.9   0.0       2.7   1.7e+03     134     173 ..     351     391 ..     349     398 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00046
                        Zeta_toxin 11 psqerPklillgGqpGAGKselaellkdele 41
                                      +++++P  ++l G +G GK+++ ++l + le
  gi|300712853|ref|YP_003738665.1| 44 INGSQPRHVFLYGKTGVGKTAVTKYLLQHLE 74
                                      56789*********************99985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.7
                        Zeta_toxin 134 elSrlgvldRyeee.vaegRlvpkeehdeafeglresveal 173
                                       elS lg+ldR + + + +g +  + e+d +++++ +++e l
  gi|300712853|ref|YP_003738665.1| 351 ELSMLGILDRRKRNeGRGGGIYYEYEIDVSMKAAISTLEHL 391
                                       8999****999888232244555555555555555555555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00035      0.22       4      86 ..      51     161 ..      48     179 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
                            AAA_14   4 ilvitGaRrvGKTtllkqlikell.......vkkesilyinldderd................kkladpe....... 50 
                                        +++ G   vGKT + k l+++l          + + +y+n++d +                       +       
  gi|300712853|ref|YP_003738665.1|  51 HVFLYGKTGVGKTAVTKYLLQHLEqdatqydDLQVQSVYLNCEDLTSsyriavslvndlrapnN-----Qisrtgyp 122
                                       578899999*********99998899988775567899******88877877777755544331.....13444555 PP

                            AAA_14  51 ..kllelileklke.ekktylflDEiqevpewekalksl 86 
                                          +++++ ekl e  ++ +++lDE+ ++ +  ++l +l
  gi|300712853|ref|YP_003738665.1| 123 lnAVYDMLWEKLDEiGGTILVVLDEVDYIGDDDSILYQL 161
                                       55677888887544678999******9997766666555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00072      0.46      16     101 ..      47     152 ..      42     168 .. 0.84
   2 ?   -1.1   0.1         2   1.3e+03     158     187 ..     272     301 ..     263     304 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00072
                            AAA_30  16 sgdrvavltGpAGtGKttalkalreaweaag............grviglAptgkaAkvLaeelgieastiakllkrl 80 
                                       s+ r ++l G  G GKt + k l +++e++              +   l+++ + A  L ++l ++ + i +  + l
  gi|300712853|ref|YP_003738665.1|  47 SQPRHVFLYGKTGVGKTAVTKYLLQHLEQDAtqyddlqvqsvyLNCEDLTSSYRIAVSLVNDLRAPNNQISRTGYPL 123
                                       55568899****************99999966999999988777777899999999999999999999999999888 PP

                            AAA_30  81 k........grarlepgtllivDEagmvd 101
                                       +        +  ++    l++ DE+  ++
  gi|300712853|ref|YP_003738665.1| 124 NavydmlweKLDEIGGTILVVLDEVDYIG 152
                                       89999998755567777899999987775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
                            AAA_30 158 keseeraaalalregdaeealealadrgri 187
                                       +e++ r+a + l++ ++ee ++ l ++g++
  gi|300712853|ref|YP_003738665.1| 272 TEPHVREAKQLLEKQRIEESMKELTSHGHL 301
                                       5789999999*******9999999999987 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00042      0.27       6      50 ..      20      75 ..      16      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00042
                                      HHHHHHHHHHT.................TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
                            ResIII  6 eyQeeaienlleklks...........krdkrglikmaTGtGKTlvaaklierllk 50
                                      +yQ + +e+ +e+++             + +++++   TG+GKT v   l ++l +
  gi|300712853|ref|YP_003738665.1| 20 DYQPQSLEEREEEVERftaylqpvingSQPRHVFLYGKTGVGKTAVTKYLLQHLEQ 75
                                      7899999999988888888999999999999***************9888777766 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00035      0.22      98     127 ..      48      77 ..       4      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00035
                                       TTSEEEEECSTTSSHHHHHHHHCTT----- CS
                       RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelkt 127
                                       + + ++l G++GvGK+++ + ll++le+  
  gi|300712853|ref|YP_003738665.1|  48 QPRHVFLYGKTGVGKTAVTKYLLQHLEQDA 77 
                                       347899****************99987765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00053      0.34       3      33 ..      51      85 ..      49     109 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00053
                         PduV-EutP  3 killiGkvgsGKttLt....qalkgeelkYkktqa 33
                                      +++l Gk+g+GKt++t    q+l++++ +Y+  q 
  gi|300712853|ref|YP_003738665.1| 51 HVFLYGKTGVGKTAVTkyllQHLEQDATQYDDLQV 85
                                      799**********9871111445555566655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 2873.05
//
Query:       gi|300712854|ref|YP_003738666.1|  [L=61]
Description: hypothetical protein HacjB3_17663 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 450.31
//
Query:       gi|300712855|ref|YP_003738667.1|  [L=103]
Description: hypothetical protein HacjB3_17668 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 790.01
//
Query:       gi|300712856|ref|YP_003738668.1|  [L=54]
Description: hypothetical protein HacjB3_17673 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-11   42.2   0.2    6.2e-11   42.1   0.2    1.0  1  TRAM      TRAM domain
  ------ inclusion threshold ------
       0.08   12.8   0.0       0.08   12.8   0.0    1.0  1  DUF5089   Domain of unknown function (DUF5089)


Domain annotation for each model (and alignments):
>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.2   6.9e-15   6.2e-11      11      62 .]       2      50 ..       1      50 [. 0.96

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 6.9e-15
                                      EEEEE-.TTSEEEEEET.TEEEEETT--T..TEEEEEEEEEE-SSEEEEEEE CS
                              TRAM 11 lveglsksegegiGrtdngkvvfvpgdlpgIGdfVeVkItkvkrqyLrGell 62
                                      ++  l+ ++g+gi r+++g+vv+vp+++p   ++V+V+I+ v++++++++++
  gi|300712856|ref|YP_003738668.1|  2 TIDTLG-DQGDGITRIERGYVVIVPDAEP--DEEVTVEIDTVQSNVAFASVV 50
                                      688999.**********************..******************997 PP

>> DUF5089  Domain of unknown function (DUF5089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     9e-06      0.08      34      81 ..       1      48 [.       1      54 [] 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9e-06
                           DUF5089 34 kTtkelrkQgekLekakqsaikvhknaekgeelakkikregkvfvfks 81
                                      +T+++l  Qg+ + +++++ + +  +ae +ee++++i+   + ++f s
  gi|300712856|ref|YP_003738668.1|  1 MTIDTLGDQGDGITRIERGYVVIVPDAEPDEEVTVEIDTVQSNVAFAS 48
                                      699**********************************98877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 436.16
//
Query:       gi|300712857|ref|YP_003738669.1|  [L=123]
Description: hypothetical protein HacjB3_17678 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      674  (0.0375927); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 973.45
//
Query:       gi|300712858|ref|YP_003738670.1|  [L=96]
Description: transcription regulator [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-16   60.0   0.5      2e-16   59.7   0.5    1.1  1  PadR      Transcriptional regulator PadR-like family
     0.0026   17.7   0.1     0.0035   17.3   0.1    1.3  1  HTH_45    Winged helix-turn-helix
     0.0092   16.5   0.1       0.01   16.3   0.1    1.3  1  HTH_27    Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.036   13.9   0.0    1.2  1  DUF1495   Winged helix DNA-binding domain (DUF1495)
      0.062   13.2   0.2        1.3    8.9   0.0    2.5  3  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.5   5.6e-20     2e-16       1      74 [.      11      79 ..      11      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 5.6e-20
                                      HHHHHCC.S-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
                              PadR  1 iLallee.qpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74
                                      +L++++   + +G++i+ ele+++e   e+++G+lYp+L++L ++gl+e+++ +    +++++Y+lT++G+re+ 
  gi|300712858|ref|YP_003738670.1| 11 LLYVISGlDDPHGLAIKAELETYYEK--EIHHGRLYPNLDTLVDKGLIEKSELD----RRTNLYALTARGQREID 79
                                      68888544888************986..***********************998....7*************985 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   9.7e-07    0.0035      27      71 ..      34      83 ..      23      88 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.7e-07
                            HTH_45 27 ykanLsykllnkYLdmLvekgli.....kkskekYvlTekGlelleklke 71
                                      y+ ++   +l   Ld+Lv+kgli     + +++ Y lT++G++ ++  +e
  gi|300712858|ref|YP_003738670.1| 34 YEKEIHHGRLYPNLDTLVDKGLIekselDRRTNLYALTARGQREIDARRE 83
                                      5666667778888**********887777789*********997776665 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.9e-06      0.01      38      68 .]      46      74 ..       4      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
                            HTH_27 38 slkkLtekGLvertgdeadrrekrvrlTdkG 68
                                      +l+ L+ kGL+  +++e drr+ +++lT+ G
  gi|300712858|ref|YP_003738670.1| 46 NLDTLVDKGLI--EKSELDRRTNLYALTARG 74
                                      6899*******..677889**********98 PP

>> DUF1495  Winged helix DNA-binding domain (DUF1495)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     1e-05     0.036      53      85 ..      44      76 ..      40      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                           DUF1495 53 ynsessLielGLveeeeeseglklYklteeGie 85
                                      y + + L+ +GL+e+ e ++ ++lY lt +G++
  gi|300712858|ref|YP_003738670.1| 44 YPNLDTLVDKGLIEKSELDRRTNLYALTARGQR 76
                                      667789*******99999*************87 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.07   2.5e+02       2      20 ..       3      21 ..       2      32 .. 0.81
   2 ?    8.9   0.0   0.00037       1.3      42      61 ..      47      64 ..      38      65 .. 0.90
   3 ?   -1.5   0.0      0.68   2.4e+03      24      40 ..      75      91 ..      67      95 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.07
                                      T--HHHHHHHHHHHCTTTS CS
                            MarR_2  2 gltpaqarvLaaLgrrpgr 20
                                      +lt+ q+++L+++   +++
  gi|300712858|ref|YP_003738670.1|  3 DLTGFQRDLLYVISGLDDP 21
                                      78999*******9987765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00037
                                      HHHHHHTTSEEEEESSSSSS CS
                            MarR_2 42 lkrLvaaGLverrpgpeDkR 61
                                      l+ Lv++GL+e+++   D+R
  gi|300712858|ref|YP_003738670.1| 47 LDTLVDKGLIEKSEL--DRR 64
                                      789********9976..999 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.68
                                      HHHHHHHHTSSHHHHHH CS
                            MarR_2 24 vgelarrlglsksavsr 40
                                      ++e+ +r   ++++++ 
  gi|300712858|ref|YP_003738670.1| 75 QREIDARREWEQQYLQD 91
                                      45666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 690.80
//
Query:       gi|300712859|ref|YP_003738671.1|  [L=78]
Description: transcription regulator [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-13   48.5   0.2    1.1e-12   47.8   0.1    1.4  2  PadR      Transcriptional regulator PadR-like family
  ------ inclusion threshold ------
      0.033   14.8   0.0      0.038   14.6   0.0    1.1  1  RTP       Replication terminator protein


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.57   5.1e+03      54      66 ..       7      19 ..       2      20 .. 0.58
   2 !   47.8   0.1   1.2e-16   1.1e-12       1      52 [.      25      74 ..      25      78 .] 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.57
                                      STSSS-EEEEEES CS
                              PadR 54 sgegpprkyYrlT 66
                                      + +g +r    lT
  gi|300712859|ref|YP_003738671.1|  7 TPDGEERTAHDLT 19
                                      3566666666666 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 1.2e-16
                                      HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE CS
                              PadR  1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglvesewe 52
                                      iL +l+e+p+yG++i+++le+++++  e+++G+lYp+L++L + g+v ++++
  gi|300712859|ref|YP_003738671.1| 25 ILTVLSEEPQYGLAIKRNLEAYYDE--EVNHGRLYPNLNDLVERGFVGKSER 74
                                      89********************987..********************99876 PP

>> RTP  Replication terminator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.3e-06     0.038      13      67 ..      24      75 ..      15      78 .] 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.3e-06
                                      HHHHHHHTT-EBCTCHHHHHHHHHTTTT----HHHHHHHHHHHHHTTSEEEEEEE CS
                               RTP 13 ylitlvekkklyglklldelkkeFkelgykPnhseiyralhelvedgilkrrkel 67
                                       ++t++ ++++ygl +  +l + + e   + nh  +y  l++lve g++ + +++
  gi|300712859|ref|YP_003738671.1| 24 NILTVLSEEPQYGLAIKRNLEAYYDE---EVNHGRLYPNLNDLVERGFVGKSERM 75
                                      58999***************998776...78******************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 588.30
//
Query:       gi|300712860|ref|YP_003738672.1|  [L=183]
Description: hypothetical protein HacjB3_17693 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.035   13.4   0.0      0.042   13.1   0.0    1.1  1  DUF4932   Domain of unknown function (DUF4932)
      0.047   14.1   0.2      0.069   13.6   0.2    1.5  1  FCD       FCD domain


Domain annotation for each model (and alignments):
>> DUF4932  Domain of unknown function (DUF4932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.6e-06     0.042      83     158 ..      85     157 ..      63     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.6e-06
                           DUF4932  83 spqsDlekkskldnrwteeeleefvrllkefyreskFkdFytanaelykdvlenlk.kalekqdviteleef.yGak 157
                                       s       ++++d+ + +eel+++v +++++ re++ ++F+ a++e+  +   +   +  + + ++++l+e  +G  
  gi|300712860|ref|YP_003738672.1|  85 SLI-----VETTDEDILAEELRALVPAFNRAIREANVDEFFEAVEEFKFALYDECDvRRAALYLDVEWLREClFGDL 156
                                       444.....35699********************************99876655442166778888888877414544 PP

                           DUF4932 158 v 158
                                        
  gi|300712860|ref|YP_003738672.1| 157 T 157
                                       4 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   7.7e-06     0.069      25      69 ..      96     140 ..      71     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.7e-06
                               FCD  25 dlaeleellealeeaaaegdleefaeadraFHralaeaagnpvla 69 
                                         +el++l+ a+ +a++e +++ef+ea ++F  al++ ++ ++ a
  gi|300712860|ref|YP_003738672.1|  96 LAEELRALVPAFNRAIREANVDEFFEAVEEFKFALYDECDVRRAA 140
                                       3689********************************999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       962  (0.0536561); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1303.89
//
Query:       gi|300712861|ref|YP_003738673.1|  [L=93]
Description: hypothetical protein HacjB3_17698 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00055   20.1   0.0     0.0012   18.9   0.0    1.5  1  HTH_34        Winged helix DNA-binding domain
     0.0028   17.7   0.1     0.0047   17.0   0.0    1.4  1  HTH_20        Helix-turn-helix domain
     0.0084   16.2   0.0       0.01   15.9   0.0    1.2  1  Replic_Relax  Replication-relaxation
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.026   14.3   0.0    1.4  1  HTH_IclR      IclR helix-turn-helix domain
      0.033   14.4   0.0      0.044   14.0   0.0    1.4  1  Rio2_N        Rio2, N-terminal
      0.046   13.6   0.0      0.058   13.3   0.0    1.2  1  MarR_2        MarR family


Domain annotation for each model (and alignments):
>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.1e-07    0.0012       2      70 ..      18      91 ..      18      93 .] 0.88

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.1e-07
                            HTH_34  2 RlavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYie.....vdkefkgkkprtllriTpeGreafk 70
                                      R  +l +La+ de   +e+++  e+ +g    +l++L + + i+     +  e++ + p +++++T+eG++  +
  gi|300712861|ref|YP_003738673.1| 18 RYRILEVLAEHDELRSSEIRDRAEIPEGSKHYQLSMLDSWDLITpvgtqYVGEHETGIPAIIYTLTDEGHALLE 91
                                      6789**************************************9743333556788899***********98776 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06    0.0047      11      59 ..      17      65 ..      10      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-06
                                      HHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
                            HTH_20 11 vRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                                       R+ril  La+ ++l  se+ +r +++  + +y+L  L + +L++ v++
  gi|300712861|ref|YP_003738673.1| 17 DRYRILEVLAEHDELRSSEIRDRAEIPEGSKHYQLSMLDSWDLITPVGT 65
                                      59************************************99****98875 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.4e-06      0.01       1      69 [.      22      90 ..      19      93 .] 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.4e-06
                      Replic_Relax  1 LrlLaehrvlTtrqiarllfashratarrrLarLrelgllsr.lrkrvggarggsepyvYaLtpkGarll 69
                                      L++Laeh  l ++ i+   +  + +    +L  L +++l++   ++ vg+++ g   ++Y+Lt  G++ll
  gi|300712861|ref|YP_003738673.1| 22 LEVLAEHDELRSSEIRDRAEIPEGS-KHYQLSMLDSWDLITPvGTQYVGEHETGIPAIIYTLTDEGHALL 90
                                      789999999******9999999999.8999************99999999999****************9 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.8e-06     0.026       7      47 ..      20      59 ..      19      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.8e-06
                                      HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
                          HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGy 47
                                      +iL+ lae+++ l+ se+ +r+ +p  + h  L+ L  + +
  gi|300712861|ref|YP_003738673.1| 20 RILEVLAEHDE-LRSSEIRDRAEIPEGSKHYQLSMLDSWDL 59
                                      7**********.9*************999988888876666 PP

>> Rio2_N  Rio2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.5e-05     0.044       3      63 ..      13      69 ..      11      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                            Rio2_N  3 yLskedfrvLtavEmgmrnhevVptelieeisrlkeeevkkrlsrllkaklisrktakydG 63
                                       L+ + +r+L+ +     +h+   +++i  ++++ e++ +++ls l  ++li    ++y G
  gi|300712861|ref|YP_003738673.1| 13 ALTDDRYRILEVL----AEHDELRSSEIRDRAEIPEGSKHYQLSMLDSWDLITPVGTQYVG 69
                                      5888889998765....57999999****************************99999987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.9e-05     0.058       2      51 ..      13      60 ..      12      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
                                      T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
                            MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLv 51
                                      +lt   +r+L +L+ +++  l+ +e+ +r  ++ ++ ++ l  L +  L+
  gi|300712861|ref|YP_003738673.1| 13 ALTDDRYRILEVLAEHDE--LRSSEIRDRAEIPEGSKHYQLSMLDSWDLI 60
                                      688899************..*********999888777777766666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 726.55
//
Query:       gi|300712862|ref|YP_003738674.1|  [L=122]
Description: hypothetical protein HacjB3_17703 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 981.01
//
Query:       gi|300712863|ref|YP_003738675.1|  [L=166]
Description: hypothetical protein HacjB3_17708 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-05   22.4   0.1    0.00022   21.0   0.1    1.8  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
     0.0026   17.3   0.0      0.011   15.3   0.0    1.9  2  HTH_24         Winged helix-turn-helix DNA-binding
     0.0053   16.7   0.0      0.012   15.5   0.0    1.5  1  HTH_12         Ribonuclease R winged-helix domain
  ------ inclusion threshold ------
      0.013   14.9   0.1       0.02   14.3   0.1    1.2  1  DUF1460        Protein of unknown function (DUF1460)


Domain annotation for each model (and alignments):
>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1     5e-08   0.00022       2      25 ..      10      33 ..       9      54 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5e-08
                     HTH_AsnC-type  2 DeiDrkILeaLqedaRisyaeLAe 25
                                      D+iD  IL+aL e++R +y+e+ +
  gi|300712863|ref|YP_003738675.1| 10 DDIDGIILRALAENPRVPYSEITD 33
                                      9********************965 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.5e-06     0.011       2      26 ..      10      34 ..       9      36 .. 0.90
   2 ?   -1.2   0.0      0.34   1.5e+03      29      40 ..      42      53 ..      41      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.5e-06
                            HTH_24  2 detdrkILelLqknprisqreLAer 26
                                      d++d  IL++L +npr +++e+ + 
  gi|300712863|ref|YP_003738675.1| 10 DDIDGIILRALAENPRVPYSEITDT 34
                                      899999***************9875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.34
                            HTH_24 29 lSpstvnrrlkr 40
                                      +Sp  v++r+++
  gi|300712863|ref|YP_003738675.1| 42 MSPEGVRYRVDK 53
                                      79999****987 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.7e-06     0.012       3      41 ..      16      53 ..      15      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.7e-06
                            HTH_12  3 ILkilaesdkpigakeiaeeLkkrgydigeravRyrLrk 41
                                      IL+ lae+ + +   ei + L + gy+++ + vRyr  k
  gi|300712863|ref|YP_003738675.1| 16 ILRALAENPR-VPYSEITDTLAEMGYEMSPEGVRYRVDK 53
                                      9*******99.999**********************855 PP

>> DUF1460  Protein of unknown function (DUF1460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   4.4e-06      0.02      11      56 ..     112     156 ..     107     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.4e-06
                                       B-TT---S-TT-S-S-SS-SS-B-HHHHHHHHHHHHHBSSHHHHHH CS
                           DUF1460  11 YkagtLiesaeekeklvirfdglDCftyvetvlalarssseeeFak 56 
                                       Y+ g+L  s ++ ++lv+r+++ DC+  v+++++ +r ++ +++ +
  gi|300712863|ref|YP_003738675.1| 112 YAVGSL-PSLQKVDELVTRVREADCVSKVDYIVVTSRNQDMTQYLN 156
                                       677777.55666699***********************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1308.62
//
Query:       gi|300712864|ref|YP_003738676.1|  [L=531]
Description: extracellular solute-binding protein family 5 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-58  197.4   0.0    3.2e-49  167.9   0.0    2.1  2  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   7.8e-11   1.4e-06     296     374 ..      23     103 ..       6     106 .. 0.79
   2 !  167.9   0.0   1.8e-53   3.2e-49       4     292 ..     241     527 ..     239     530 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 7.8e-11
                                       EEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHH.HHCTTESEEEEEEECT..TSTTHHHHHHH CS
                         SBP_bac_5 296 klkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatyler.vkdgdfdmillgwgad..ypdpdnflnpf 369
                                       + +l++++  ++p + +  +li+++++++G++vev ++ w+ t  +r  ++++fd + l+w +     dpd f +++
  gi|300712864|ref|YP_003738676.1|  23 PIELIVTTEDYDPIRYEFGNLIAENWRELGFEVEVTPLAWN-TIVSRtFDEQNFDTFTLNWAGRaaRLDPDVFCYSL 98 
                                       77899999999999************************995.444443699**********9984456777777777 PP

                                       HSTTC CS
                         SBP_bac_5 370 lsssg 374
                                        +ss+
  gi|300712864|ref|YP_003738676.1|  99 HHSSQ 103
                                       66665 PP

  == domain 2  score: 167.9 bits;  conditional E-value: 1.8e-53
                                       ESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEE CS
                         SBP_bac_5   4 paLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrf 80 
                                        +LAe++ +v dD +t++ ++R+g +++DG++lt+eDv+fsf++l +  ++s  +s++      ++ e +d++tv+f
  gi|300712864|ref|YP_003738676.1| 241 NWLAEDV-TVVDD-TTIRATIRDGHQWHDGEDLTVEDVKFSFDYLNE--YSSLLSSFMG---PLESTEIIDERTVEF 310
                                       69****6.76666.67***************************9855..5555555553...79************* PP

                                       EESSETTTTTTH.CHHHHHHHGC......CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCS CS
                         SBP_bac_5  81 tlkkpnalfltl.laavpasiak......kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkp 150
                                       tl+  +a+f+++ l +v + + +      +  +  +++ +++n++pvg+GP+ ++++++++++vl++n +      p
  gi|300712864|ref|YP_003738676.1| 311 TLSDSFAPFIPVgLGQVFIIPQHiwenipEDLDGVSEPVGWENPEPVGSGPFEFVSWNRDEQMVLQANQNH--FHTP 385
                                       *******8555415555555555888888899999***********************************5..6999 PP

                                       SSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHHTTEEE.EEEEEEEEEEEEEETTTSTGGGSHHHHHH CS
                         SBP_bac_5 151 kldriefkvipdsdaraaalqsGeiddvaepppsdieqlkeakglkv.lyespgggvtylafNtkkppfddkrvRqA 226
                                       ++ +++    +d ++ ++ l+   +d +  +p +d     +++   v +++  + ++++++   ++ppfdd++vR+A
  gi|300712864|ref|YP_003738676.1| 386 NIPELIKIPGADMQSLVRLLEDESLDMIGWVPGPDTVNRLDSEIDHVtISSIDSHNWYHINYQLERPPFDDVAVRHA 462
                                       99999999998999999999*****9997777666666655555555689999************************ PP

                                       HHHHS-HHHHHHHCTTTSSEEESSS.STTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCE CS
                         SBP_bac_5 227 lsyAiDreeivkavlegyatpansl.lppsspgadeeykpaykaydpekAkklLkeaGykdgdgggl 292
                                       l+ Ai++++iv++v+ g +t+++++  + +  +++++ ++    +d+  A+  L+eaGy+  +g+++
  gi|300712864|ref|YP_003738676.1| 463 LADAIPKQDIVDIVMDGMGTVTHTFmAAVNDFWHNPDVREF--GNDLGRAQITLEEAGYTLENGRLY 527
                                       *************************5455555555555544..479****************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3951.12
//
Query:       gi|300712865|ref|YP_003738677.1|  [L=325]
Description: binding-protein-dependent transport systems inner membrane component [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-36  124.9  11.9    2.9e-36  124.9  11.9    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.3     0.035   6.4e+02      28      44 ..      13      54 ..       6     114 .. 0.52
   2 !  124.9  11.9   1.6e-40   2.9e-36       1     184 [.     115     323 ..     115     324 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.035
                      BPD_transp_1 28 lslPsfvlaillvlvf.........................v 44
                                      + + +f++++ +++v+                         +
  gi|300712865|ref|YP_003738677.1| 13 QLVFTFWVFVTMLFVLfraapgdptsmyvtqgmsaearaatI 54
                                      445555533333322234555555555444444444444440 PP

  == domain 2  score: 124.9 bits;  conditional E-value: 1.6e-40
                      BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf..........................vilsilgh 51 
                                       gi++G+l++ +r++ + +   ++  + +s P f+ +i+++ +f                            ++ ++h
  gi|300712865|ref|YP_003738677.1| 115 GITFGALLGWYRGSSFERGGIIVALMARSSPEFWTGIIILSIFsfglglfpsggmravgtqpdsfmaryLAWDFVYH 191
                                       89**************************************999**************************77789*** PP

                      BPD_transp_1  52 lilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavll 128
                                       +ilp+++ +++++a +++l+r+ +l++l  d++e  +a G+s+++i+++++ +n++ p++t +++++g ++gg++++
  gi|300712865|ref|YP_003738677.1| 192 MILPMLAGAIYYMATPMLLMRNTMLDVLKADFIEIKKAEGLSERRILFRHAARNSVLPLVTIIAIVSGTAIGGSLII 268
                                       ***************************************************************************** PP

                      BPD_transp_1 129 eflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                                       e++++wpG+g+ ++e+i+++dy+ ++ g+++ ++ +v+++n++ad+ + +ldprv 
  gi|300712865|ref|YP_003738677.1| 269 ETVFNWPGMGREMVESISYNDYPVAM-GTFFLMGSVVIIMNFFADLAYGYLDPRVQ 323
                                       **************************.***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2398.10
//
Query:       gi|300712866|ref|YP_003738678.1|  [L=314]
Description: binding-protein-dependent transport systems inner membrane component [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-24   85.5  14.2    3.5e-24   85.5  14.2    2.1  3  BPD_transp_1  Binding-protein-dependent transport system inne
     0.0001   22.2   0.0     0.0001   22.2   0.0    3.1  4  OppC_N        N-terminal TM domain of oligopeptide transport 
  ------ inclusion threshold ------
       0.04   13.8   0.0       0.11   12.4   0.0    1.7  1  Fanconi_A     Fanconi anaemia group A protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.21   1.3e+03     146     179 ..      27      64 ..       8      67 .. 0.48
   2 ?   -1.3   0.0      0.25   1.5e+03     138     174 ..      89     121 ..      79     129 .. 0.50
   3 !   85.5  14.2   5.9e-28   3.5e-24       1     181 [.     127     304 ..     127     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.21
                      BPD_transp_1 146 lgydyseis....nggvlalviavlllnlvadilqrll 179
                                       l++++sei+    +  +  +++ +l + +++ ++ r+l
  gi|300712866|ref|YP_003738678.1|  27 LSKQLSEITgllrANRMGQIGVTLLFVFVLMGLFGRYL 64 
                                       55556666666663333334444444444444444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.25
                      BPD_transp_1 138 gtllleailgydyseisnggvlalviavlllnlvadi 174
                                       + +l +++lg+d+++      l+++ + ll+ ++a +
  gi|300712866|ref|YP_003738678.1|  89 THPLGTTNLGRDVASQV----LVGARVSLLIGFLAAF 121
                                       55555666666666333....3333333333333332 PP

  == domain 3  score: 85.5 bits;  conditional E-value: 5.9e-28
                      BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraal 76 
                                       g+ +G++++ ++++++d+ l++l ++ ++lP++ ++++lv        lg + ++ vi+++l+ +  ++r+ir+++l
  gi|300712866|ref|YP_003738678.1| 127 GVNIGLISG-YFGGWVDDGLMRLADIAYGLPFLPFVLVLV------FLLGPSLWSiVIVISLILWRSTARVIRSQVL 196
                                       5679*****.******************************......67998888889******************** PP

                      BPD_transp_1  77 rslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydysei 153
                                       +  ++ +ve ara Gas+ +i+++++lPn+lp ++    +++++++ + + ++flg    +g++ +++  ++ +++ 
  gi|300712866|ref|YP_003738678.1| 197 SHKQRPYVESARAIGASDLRIMYRHILPNVLPLAFLYGSFSVAWAVIAEASISFLG----FGDPSMTSWGQMLFDAY 269
                                       ********************************************************....88777765444444444 PP

                      BPD_transp_1 154 s.......nggvlalviavlllnlvadilqrlldp 181
                                       +       ++ v+  +i+++l++ +++++ r+l++
  gi|300712866|ref|YP_003738678.1| 270 TagavrfaWWWVVPPGICIMLMVMSVFFIGRALEQ 304
                                       48889999899999999999999999999999886 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.7e-08    0.0001      10      42 ..      38      72 ..      30      87 .. 0.84
   2 ?   -1.3   0.4      0.37   2.2e+03      18      32 ..     111     125 ..     108     143 .. 0.59
   3 ?   -2.8   2.1       1.1   6.6e+03      26      36 ..     162     172 ..     157     186 .. 0.63
   4 ?   -4.0   0.7       2.7   1.6e+04      24      32 ..     288     296 ..     286     302 .. 0.57

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.7e-08
                            OppC_N 10 FkrNklAvvglvilllllliaifaPliaPydp..q 42
                                      ++ N++  +g  +l +++l+ +f+ ++aP+dp   
  gi|300712866|ref|YP_003738678.1| 38 LRANRMGQIGVTLLFVFVLMGLFGRYLAPHDPnaI 72
                                      799***************************99652 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.37
                            OppC_N  18 vglvilllllliaif 32 
                                       v+l i  l +++++f
  gi|300712866|ref|YP_003738678.1| 111 VSLLIGFLAAFVSVF 125
                                       555555554445444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.1
                            OppC_N  26 llliaifaPli 36 
                                       l+l+ +++P +
  gi|300712866|ref|YP_003738678.1| 162 LVLVFLLGPSL 172
                                       45555555555 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 2.7
                            OppC_N  24 llllliaif 32 
                                       + l ++++f
  gi|300712866|ref|YP_003738678.1| 288 IMLMVMSVF 296
                                       445555554 PP

>> Fanconi_A  Fanconi anaemia group A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.8e-05      0.11       6      33 ..      50      77 ..      46      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
                         Fanconi_A  6 sLfFFsLmgLlsskltpkeavdslkale 33
                                       Lf F LmgL   +l+p++    ++a +
  gi|300712866|ref|YP_003738678.1| 50 LLFVFVLMGLFGRYLAPHDPNAINRAAD 77
                                      5888**************9877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2196.94
//
Query:       gi|300712867|ref|YP_003738679.1|  [L=352]
Description: oligopeptide/dipeptide ABC transporter, ATPase subunit [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-27   97.0   0.0    2.1e-27   96.3   0.0    1.4  1  ABC_tran      ABC transporter
    2.6e-20   72.7   0.1    5.5e-20   71.7   0.1    1.6  1  oligo_HPY     Oligopeptide/dipeptide transporter, C-terminal 
    4.5e-07   30.0   0.5     0.0001   22.3   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.3e-06   27.9   1.2    7.6e-05   23.0   0.7    2.8  2  AAA_22        AAA domain
    4.3e-05   23.1   1.5    0.00039   19.9   1.5    2.0  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00028   20.9   0.0    0.00063   19.8   0.0    1.6  1  AAA_5         AAA domain (dynein-related subfamily)
     0.0015   17.8   0.5      0.015   14.5   0.1    2.6  2  NB-ARC        NB-ARC domain
      0.003   17.0   0.0     0.0071   15.7   0.0    1.6  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
     0.0032   17.4   0.1     0.0061   16.5   0.1    1.5  1  NTPase_1      NTPase
     0.0037   17.7   0.1     0.0081   16.6   0.1    1.7  1  AAA_16        AAA ATPase domain
     0.0071   16.1   0.1      0.014   15.2   0.1    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0083   15.9   0.0      0.012   15.3   0.0    1.3  1  PRK           Phosphoribulokinase / Uridine kinase family
     0.0096   15.8   0.0      0.021   14.7   0.0    1.6  1  MobB          Molybdopterin guanine dinucleotide synthesis pr
  ------ inclusion threshold ------
       0.01   16.3   0.1      0.027   14.9   0.1    1.9  1  AAA           ATPase family associated with various cellular 
      0.012   14.4   0.2      0.022   13.6   0.2    1.4  1  ABC_ATPase    Predicted ATPase of the ABC class
      0.015   14.4   0.1      0.027   13.5   0.1    1.4  1  T2SSE         Type II/IV secretion system protein
      0.021   14.3   0.0      0.041   13.4   0.0    1.4  1  T6SS_VasJ     Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A
      0.026   14.5   0.0       0.05   13.5   0.0    1.5  1  NACHT         NACHT domain
      0.034   14.3   0.0      0.083   13.0   0.0    1.7  1  AAA_33        AAA domain
      0.035   14.2   0.4      0.084   13.0   0.1    1.7  2  DUF87         Helicase HerA, central domain
      0.041   13.6   0.3       0.25   11.0   0.0    2.1  2  AAA_30        AAA domain
      0.044   13.7   0.1      0.098   12.6   0.0    1.6  2  ATPase_2      ATPase domain predominantly from Archaea
      0.059   13.7   0.2       0.11   12.8   0.2    1.6  1  AAA_19        AAA domain
       0.08   12.7   0.0       0.19   11.4   0.0    1.7  1  AAA_24        AAA domain
      0.086   12.3   0.0       0.15   11.5   0.0    1.4  1  AAA_7         P-loop containing dynein motor region
       0.14   11.3   0.1       0.23   10.6   0.1    1.4  1  G-alpha       G-protein alpha subunit
       0.16   12.0   0.0       0.29   11.1   0.0    1.4  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.19   11.1   0.2       0.86    9.0   0.0    1.9  2  Pox_A32       Poxvirus A32 protein
       0.21   12.1   1.2        0.4   11.2   0.1    2.1  2  AAA_18        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   3.4e-30   2.1e-27       2     136 ..      24     181 ..      23     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 3.4e-30
                                       EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG.....B-HHHCCHCEEEE-SS.. CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx.. RF
                          ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke.....qeleslrkeigvlpqe.. 67 
                                       + vsl+++++e++++vGe+G+GK+t++k +++ll +     eG+i+++++d++e      ++e   kei+++pq+  
  gi|300712867|ref|YP_003738679.1|  24 DGVSLSVSPNETLGLVGESGSGKTTVAKSIIRLLPDngeiVEGTIEYEDRDITEmsmkeVRRELRWKEISMIPQNam 100
                                       689******************************9877777788889999999998888677777889********98 PP

                                       --S-TTSBHHHH...............HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSE CS
                                       xxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                          ABC_tran  68 pqlfpeltvren...............esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkl 129
                                       + ++p +tv ++               e+++++e++ ++lgl+    +++++ p+++SgG+ qr ++a al+ +p +
  gi|300712867|ref|YP_003738679.1| 101 NGFDPVHTVCNQiieviqahesdtskaEARKRAEDLFEELGLDR---DRIDDYPHQFSGGMAQRAMIALALAVNPAV 174
                                       8999999999999*******999887777777999999999777...888999************************ PP

                                       EEEESTT CS
                                       xxxxxxx RF
                          ABC_tran 130 lllDEpt 136
                                       +l+DEpt
  gi|300712867|ref|YP_003738679.1| 175 VLADEPT 181
                                       ******9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.1   8.8e-23   5.5e-20       1      65 []     233     297 ..     233     297 .. 0.99

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 8.8e-23
                         oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                                       vE +++++++++p+HPYT +L +++p++++  ++l +i+g++p+l++ deGC+FapRCpfa e C
  gi|300712867|ref|YP_003738679.1| 233 VESADADTIIRNPRHPYTLGLRNAFPDITADSQELISIPGTPPNLTDPDEGCRFAPRCPFAEERC 297
                                       8***************************************************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.015         9       3      22 ..      37      56 ..      36      81 .. 0.77
   2 !   22.3   0.0   1.6e-07    0.0001     175     302 ..      86     217 ..      79     218 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.015
                            AAA_21  3 vliGpNgsGKSnLLdaldll 22
                                      +l+G  gsGK+++ + +  l
  gi|300712867|ref|YP_003738679.1| 37 GLVGESGSGKTTVAKSIIRL 56
                                      69***********9988555 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 1.6e-07
                            AAA_21 175 yfgfakekrllqrlvrslklveielsdlgegeeliasvderlrer......gvvflengdgqelparelSdGtkrll 245
                                       ++ ++++  + q  ++++++v+     + e+++ ++s       r      +  +  + d+ +  ++++S G+ +  
  gi|300712867|ref|YP_003738679.1|  86 ELRWKEISMIPQNAMNGFDPVHTVCNQIIEVIQAHESDTSKAEARkraedlFEELGLDRDRIDDYPHQFSGGMAQR- 161
                                       5555555555666666666666555555555555555555555556666666666677777777899*********. PP

                            AAA_21 246 alltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                                       a++++ l+ ++  +++l DEp + L+  ++ r+l+ ++el++  ++  il TH+ +++
  gi|300712867|ref|YP_003738679.1| 162 AMIALALAVNP--AVVLADEPTTALDVVIQDRILQTISELQDeFDTAMILITHDMSVV 217
                                       99999999998..9***********************99999899999******8876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.7   1.2e-07   7.6e-05      10     128 ..      38     210 ..      33     215 .. 0.78
   2 ?   -0.2   0.0       1.8   1.1e+03      97     117 ..     318     342 ..     308     347 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.2e-07
                            AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee...........................................erpevv 43 
                                       ++GesG+GKTt+++ + + l+   ++ e                                            + +++
  gi|300712867|ref|YP_003738679.1|  38 LVGESGSGKTTVAKSIIRLLPDNGEIVEgtieyedrditemsmkevrrelrwkeismipqnamngfdpvhtVCNQII 114
                                       79******************877777779***********************9999999999999976665333333 PP

                            AAA_22  44 .fvtlpsst....sskdllrellralglelka...erlsseellealeqalrarav.ielliiDEaqh.lr...see 107
                                         +++ +s     + ++ +++l+++lgl++++   ++++ +  +++ +  + a av +++++ DE    l+   +++
  gi|300712867|ref|YP_003738679.1| 115 eVIQAHESDtskaEARKRAEDLFEELGLDRDRiddYPHQFSGGMAQRAMIALALAVnPAVVLADEPTTaLDvviQDR 191
                                       4444444445555777888888888888888877755555555533333333333378*******9998988888** PP

                            AAA_22 108 aleeLrsllnlsrkgvqliLv 128
                                       +l+++++l++  ++++++iL+
  gi|300712867|ref|YP_003738679.1| 192 ILQTISELQD--EFDTAMILI 210
                                       **********..********8 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.8
                            AAA_22  97 iDEaqhlr...s.eealeeLrslln 117
                                        DEa+ lr   s  e +++Lr+ ++
  gi|300712867|ref|YP_003738679.1| 318 ADEAEMLRkeaSkRETWQKLRNQSK 342
                                       5999999875525788887776655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   1.5   6.2e-07   0.00039      28     207 ..      37     223 ..      22     233 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.2e-07
                                       EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC...CCCC--...BTTCSSTTEEEEEEEEEETTEESSSSSSCEE CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                             SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrsekl...sdlihk...skekasvkkaeveitfdnedkklkiekeevs 98 
                                        +vG+ GSGK+ +  +i  +L ++    + + ++   ++ i++   ++ ++++   e++++ +n  +     ++  +
  gi|300712867|ref|YP_003738679.1|  37 GLVGESGSGKTTVAKSIIRLLPDNGE--IVEGTIeyeDRDITEmsmKEVRRELRWKEISMIPQNAMNG---FDPVHT 108
                                       589**************999985322..2222210111223332444677777777888875555555...444444 PP

                                       EEEEEETTSEEEEEETTEEE-H.HHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTT CS
                                       xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                             SMC_N  99 isrrvkrkgeseykingkevtk.kevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDei 167
                                       +  ++++  +  ++ + ++++  k  ++l+e+ g++++       ++SgG  + +++aL +A++   p +++l De 
  gi|300712867|ref|YP_003738679.1| 109 VCNQIIEVIQ-AHESDTSKAEArKRAEDLFEELGLDRDriddyphQFSGGMAQRAMIALALAVN---P-AVVLADEP 180
                                       4444444444.3444555554437788999999999888889999*****99999999999875...4.46789*** PP

                                       TTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-.SC CS
                                       xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xx RF
                             SMC_N 168 daaLDeknvkkvaellkekskn..aQfivislreemleka.dk 207
                                         aLD     ++ + + e +++  + +i i+++  ++++  d+
  gi|300712867|ref|YP_003738679.1| 181 TTALDVVIQDRILQTISELQDEfdTAMILITHDMSVVSETcDR 223
                                       *****************99998445677778777776665233 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     1e-06   0.00063       4      43 ..      38      77 ..      35     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1e-06
                                      EE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH- CS
                             AAA_5  4 LvGppGtgKselaerlaaalnreveyvqltrdtteedlkg 43
                                      LvG++G+gK+++a+++ ++l ++ e+v +t  ++ +d++ 
  gi|300712867|ref|YP_003738679.1| 38 LVGESGSGKTTVAKSIIRLLPDNGEIVEGTIEYEDRDITE 77
                                      9*****************************9999999974 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.5e-05     0.015      22      99 ..      35     139 ..      26     146 .. 0.79
   2 ?   -0.1   0.0      0.68   4.2e+02      35      68 ..     187     226 ..     185     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
                                       EEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEE............................EEESXXHHHHHHH CS
                            NB-ARC  22 vvalvGmgGvGKttlakqilnksdevegrFdsvawv............................vvsktdkseeile 70 
                                        ++lvG  G+GKtt+ak+i++ +    +  ++ +                               +   d  +++ +
  gi|300712867|ref|YP_003738679.1|  35 TLGLVGESGSGKTTVAKSIIRLLPDNGEIVEGTIEYedrditemsmkevrrelrwkeismipqnAMNGFDPVHTVCN 111
                                       689*****************988777777777666677777788888888888888888888877777788888888 PP

                                       XXHHHHHCCCTTSSSS-STTSHHHHHHHH CS
                            NB-ARC  71 tilkeLslseddleekeeveslkrklvrl 99 
                                       +i+++++ +e+d+++ e ++ ++++l++ 
  gi|300712867|ref|YP_003738679.1| 112 QIIEVIQAHESDTSKAEARK-RAEDLFEE 139
                                       88888888888888877777.77777765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.68
                                       HHHHHHCCSHCCCCCCBTEEEEE......EEESXXHHHHH CS
                            NB-ARC  35 tlakqilnksdevegrFdsvawv......vvsktdkseei 68 
                                       ++   il+  +e++ +Fd  + +      vvs+t +   +
  gi|300712867|ref|YP_003738679.1| 187 VIQDRILQTISELQDEFDTAMILithdmsVVSETCDRIAV 226
                                       6778899999999999997777657777777777665555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05    0.0071       7      50 ..      18      61 ..      14      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
                      Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllppls 50
                                      G+ +a   + ++++ +  l lvG +GsGKt +ak +  llp+  
  gi|300712867|ref|YP_003738679.1| 18 GNVAAADGVSLSVSPNETLGLVGESGSGKTTVAKSIIRLLPDNG 61
                                      66777788888999999999*********************864 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   9.8e-06    0.0061       3      39 ..      37      73 ..      35      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.8e-06
                                      EEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE- CS
                          NTPase_1  3 fiTGppGvGKtTlvkkvlellkssgvkvgGfyteevr 39
                                       + G++G+GKtT+ k +++ll ++g  v+G +  e r
  gi|300712867|ref|YP_003738679.1| 37 GLVGESGSGKTTVAKSIIRLLPDNGEIVEGTIEYEDR 73
                                      578***************************9988766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.3e-05    0.0081      25      63 ..      34      71 ..      22     213 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-05
                            AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                                      e + l+GesG+GK+++++++ r l ++ g  ++g+ +  
  gi|300712867|ref|YP_003738679.1| 34 ETLGLVGESGSGKTTVAKSIIRLLPDN-GEIVEGTIEYE 71
                                      67789****************766666.44444444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.2e-05     0.014      12      46 ..      23      57 ..      18      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-05
                            AAA_29 12 fdghtieidlkgatlltGpsGsGKSTllDAiqalL 46
                                       dg +++++++++  l+G+sGsGK+T+  +i+ lL
  gi|300712867|ref|YP_003738679.1| 23 ADGVSLSVSPNETLGLVGESGSGKTTVAKSIIRLL 57
                                      577889999999888***********988887776 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     2e-05     0.012       3      73 ..      37     105 ..      35     131 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2e-05
                               PRK   3 gvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeand.fdl 73 
                                       g+ g+SG+Gkttva+ +  ++  ++   +e+  ++    d+ e++++  +r+ +  ke+s+   +a++ fd 
  gi|300712867|ref|YP_003738679.1|  37 GLVGESGSGKTTVAKSIIRLLPDNGEI-VEG-TIEYEDRDITEMSMKEVRRELRW-KEISMIPQNAMNgFDP 105
                                       899****************99854433.222.23334455555655555555544.4455554444332443 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.3e-05     0.021       2      30 ..      36      64 ..      35      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.3e-05
                              MobB  2 lgivgksgsGKTtLleklipelkarglrv 30
                                      lg+vg sgsGKTt  + +i+ l ++g  v
  gi|300712867|ref|YP_003738679.1| 36 LGLVGESGSGKTTVAKSIIRLLPDNGEIV 64
                                      89********************9998655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   4.4e-05     0.027       3      52 ..      38      98 ..      36     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.4e-05
                                      EESSTTSSHHHHHHHHHHHH..............THEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
                               AAA  3 lyGppGtGKTllakavakel..............gvefleisgsellskyvgesekkirelfke 52
                                      l+G  G GKT++ak++++ l              ++++ e+s++e++    + + k+i+++ ++
  gi|300712867|ref|YP_003738679.1| 38 LVGESGSGKTTVAKSIIRLLpdngeivegtieyeDRDITEMSMKEVR---RELRWKEISMIPQN 98
                                      89****************98665555554444433668888888888...33444444444444 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   3.5e-05     0.022     322     409 ..     153     242 ..     134     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.5e-05
                                       S--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH.--EEEEEE.S CS
                        ABC_ATPase 322 dASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykkl.gvstilvv.g 396
                                       + SG + q a i+ al ++  ++L DE t+A   +i+D+ +q + + ++e  t+++   +++         i v+ g
  gi|300712867|ref|YP_003738679.1| 153 QFSGGMAQRAMIALALAVNPAVVLADEPTTALDVVIQDRILQTISELQDEFDTAMILITHDMSVVSeTCDRIAVMyG 229
                                       569***************************************99877776666666555555433203345666667 PP

                                       S-GCCTTT-SEEE CS
                        ABC_ATPase 397 gsgdyldvAdtvi 409
                                       g     + Adt+i
  gi|300712867|ref|YP_003738679.1| 230 GRVVESADADTII 242
                                       7777777777777 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.4e-05     0.027     123     182 ..      27      83 ..       8      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
                             T2SSE 123 rkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnak 182
                                       + +v+ + ++ + G  gsGKtt++ +++  ++++  +i  vE ++E++ +++  +++++ 
  gi|300712867|ref|YP_003738679.1|  27 SLSVSPNETLGLVGESGSGKTTVAKSIIRLLPDN-GEI--VEGTIEYEDRDITEMSMKEV 83 
                                       556666677778899*****************99.555..7*******999999988765 PP

>> T6SS_VasJ  Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.6e-05     0.041      21      88 ..      73     140 ..      70     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.6e-05
                         T6SS_VasJ  21 qdpadlaayrlrRaarWdsitslPpadaegrTrlaapsadrvaeykrllkqgewaelleeaEasltea 88 
                                       +d +++ +  +rR +rW++i+  P+++ +g  ++  +  ++++ ++++ ++ + ae+ ++aE+ + e 
  gi|300712867|ref|YP_003738679.1|  73 RDITEMSMKEVRRELRWKEISMIPQNAMNGFDPVHTVCNQIIEVIQAHESDTSKAEARKRAEDLFEEL 140
                                       56677788899****************************************************99885 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.1e-05      0.05       3      24 ..      36      57 ..      34      63 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.1e-05
                                      EEEEC-TTTCHHHHHHHHHHHH CS
                             NACHT  3 vilqGeaGsGKTtLlqklalaw 24
                                      + l Ge+GsGKTt ++++++++
  gi|300712867|ref|YP_003738679.1| 36 LGLVGESGSGKTTVAKSIIRLL 57
                                      6689**************9987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00013     0.083       4      32 ..      38      68 ..      36     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00013
                            AAA_33  4 lvGlpGsGKstlaerllkklg..avllssdt 32
                                      lvG +GsGK+t+a+++++ l+  +++++  +
  gi|300712867|ref|YP_003738679.1| 38 LVGESGSGKTTVAKSIIRLLPdnGEIVEGTI 68
                                      69*************9998887777766555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   0.00014     0.084       4      48 ..      18      58 ..      16      64 .. 0.81
   2 ?   -2.5   0.0       7.1   4.4e+03     149     178 ..     116     139 ..      73     162 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00014
                             DUF87  4 GrllsgsevpvyldlnklvtrHlAilgsTGsGKSntvavLleell 48
                                      G+++ +++v +++  n+     l+ +g++GsGK++ ++++++ l 
  gi|300712867|ref|YP_003738679.1| 18 GNVAAADGVSLSVSPNET----LGLVGESGSGKTTVAKSIIRLLP 58
                                      677777787777777766....99*****************9875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.1
                             DUF87 149 elkkekeelrklknqaiarlldkledllrk 178
                                        ++       ++++ ++a+  ++ edl+++
  gi|300712867|ref|YP_003738679.1| 116 VIQ------AHESDTSKAEARKRAEDLFEE 139
                                       222......222222222233333333333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00041      0.25      16      50 ..      31      65 ..      22      71 .. 0.84
   2 ?   -0.0   0.1      0.98   6.1e+02      52      82 ..     126     165 ..     108     202 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00041
                            AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaaggrvi 50
                                      s++ +  l+G  G+GKtt+ k++ +++ ++g+ v 
  gi|300712867|ref|YP_003738679.1| 31 SPNETLGLVGESGSGKTTVAKSIIRLLPDNGEIVE 65
                                      66778889***************999998886665 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.98
                            AAA_30  52 lAptgkaAkvLaeelgieastiakllkrlk.........g 82 
                                        A   k A++L eelg++ ++i+ + ++           +
  gi|300712867|ref|YP_003738679.1| 126 KAEARKRAEDLFEELGLDRDRIDDYPHQFSggmaqramiA 165
                                       5778889999999999999999999988887776666542 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00016     0.098      19      92 ..      32     101 ..      27     146 .. 0.77
   2 ?   -2.6   0.0       6.6   4.1e+03     121     172 ..     174     219 ..     160     231 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00016
                          ATPase_2  19 pneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkaele 92 
                                       pne + + G  gsGKt++ k ii  l d ++ v   i+ ++++i++++ +    e++++l+ +  + +p+++++
  gi|300712867|ref|YP_003738679.1|  32 PNETLGLVGESGSGKTTVAKSIIRLLPDNGEIVEGTIEYEDRDITEMSMK----EVRRELRWKEISMIPQNAMN 101
                                       6666677899***********************999*****999999999....66666666665666666653 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.6
                          ATPase_2 121 iiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglfie 172
                                       ++++De   + d+ ++      + +l+ i +l  e ++++++++   +++ e
  gi|300712867|ref|YP_003738679.1| 174 VVLADEPTTALDVVIQ------DRILQTISELQDEFDTAMILITHDMSVVSE 219
                                       6677777777776666......455555555555555555555555555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   0.00018      0.11       8      41 ..      31      64 ..      26     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00018
                            AAA_19  8 lkekvllvtaGpGtGKTrvlkhivallvelggvk 41
                                      +++++l +++  G+GKT+v k i++ll ++g++ 
  gi|300712867|ref|YP_003738679.1| 31 SPNETLGLVGESGSGKTTVAKSIIRLLPDNGEIV 64
                                      56788999*******************9999764 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0003      0.19       5      22 ..      36      53 ..      33     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0003
                            AAA_24  5 iliyGpsgiGKTtlakel 22
                                      + ++G+sg+GKTt+ak++
  gi|300712867|ref|YP_003738679.1| 36 LGLVGESGSGKTTVAKSI 53
                                      6799************98 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024      0.15      30      59 ..      30      59 ..      20      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
                             AAA_7 30 lknkkpvllvGptGtGKtviikdllkkldk 59
                                      ++ +  + lvG++G+GKt+++k++++ l++
  gi|300712867|ref|YP_003738679.1| 30 VSPNETLGLVGESGSGKTTVAKSIIRLLPD 59
                                      666777889**************9999884 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00037      0.23      26      56 ..      36      75 ..      29     227 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
                                      EEEEESTTSSHHHHHHHHHHHCS--.........--HHHH CS
                           G-alpha 26 llllGqseSGKsTilkqlkllykkg.........fseeel 56
                                      l l+G+s+SGK+T+ k++ +l  ++         ++++++
  gi|300712867|ref|YP_003738679.1| 36 LGLVGESGSGKTTVAKSIIRLLPDNgeivegtieYEDRDI 75
                                      5699*************98666444366666554333322 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00048      0.29      18      43 ..      30      57 ..      13      67 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00048
                                      H..TEEEEEEESTTSSHHHHHHHHHHHT CS
                              TsaE 18 l..gdvilLeGdLGaGKTtlvrglakal 43
                                      +  ++++ L G+ G+GKTt ++++++ l
  gi|300712867|ref|YP_003738679.1| 30 VspNETLGLVGESGSGKTTVAKSIIRLL 57
                                      24467799****************9977 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0014      0.86      16      36 ..      36      56 ..      27      60 .. 0.86
   2 ?   -0.7   0.0       1.3   7.8e+02     175     219 ..     189     233 ..     165     245 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0014
                           Pox_A32 16 lalvGgsGsGktvyLlsLlrt 36
                                      l lvG+sGsGkt+  +s++r 
  gi|300712867|ref|YP_003738679.1| 36 LGLVGESGSGKTTVAKSIIRL 56
                                      779***********9999876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
                           Pox_A32 175 kkkllkvlnilrsaeqkkrkvliied.svfsegeariCldsaDesv 219
                                       + ++l++++ l+++  ++  +li +d sv se   ri +      v
  gi|300712867|ref|YP_003738679.1| 189 QDRILQTISELQDEF-DTAMILITHDmSVVSETCDRIAVMYGGRVV 233
                                       445666666666665.566666666556666666666555444433 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00064       0.4       3      27 ..      38      63 ..      36     133 .. 0.71
   2 ?   -1.4   0.1       5.4   3.3e+03      75     118 ..     309     345 ..     293     352 .] 0.56

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00064
                            AAA_18  3 ltGtpGvGKttlakeLskrl.gfgvn 27
                                      l G +G+GKtt+ak + ++l  +g++
  gi|300712867|ref|YP_003738679.1| 38 LVGESGSGKTTVAKSIIRLLpDNGEI 63
                                      7899***********98887666332 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 5.4
                            AAA_18  75 knlvidghlaeleseaakdikkvvLtaspeelleRlekRgyeea 118
                                       +  v++ h+a+  ++ +k       +as+ e ++ l+++++e+a
  gi|300712867|ref|YP_003738679.1| 309 DGHVVECHRADEAEMLRK-------EASKRETWQKLRNQSKETA 345
                                       444555555555555555.......3555566666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 2403.83
//
Query:       gi|300712868|ref|YP_003738680.1|  [L=350]
Description: oligopeptide/dipeptide ABC transporter, ATPase subunit [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-29  103.7   0.0    1.5e-29  103.2   0.0    1.2  1  ABC_tran   ABC transporter
      6e-19   68.3   0.1    1.1e-18   67.4   0.1    1.5  1  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    0.00047   20.1   0.4      0.018   14.9   0.1    2.1  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
  ------ inclusion threshold ------
      0.015   14.7   0.0      0.035   13.5   0.0    1.6  1  SMC_N      RecF/RecN/SMC N terminal domain
      0.041   13.9   0.0         58    3.8   0.0    3.6  4  z-alpha    Adenosine deaminase z-alpha domain
      0.044   14.1   0.0       0.12   12.7   0.0    1.8  1  AAA_22     AAA domain
       0.15   11.8   0.1       0.29   10.9   0.1    1.4  1  AAA_29     P-loop containing region of AAA domain
       0.26   10.6   0.4        2.3    7.5   0.5    2.0  2  ATPase     KaiC
       0.26   10.4   0.0        0.4    9.8   0.0    1.2  1  NB-ARC     NB-ARC domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   7.7e-33   1.5e-29       2     136 ..      46     198 ..      45     199 .. 0.94

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 7.7e-33
                                       EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TT CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxx RF
                          ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpe 73 
                                       + v+l++kege+ ++ Ge+G+GK+tL k+ ++l++pt+G+i +dg+d++e   +el  +r+e +v++q+  ++l+p+
  gi|300712868|ref|YP_003738680.1|  46 DGVTLSVKEGETFGLAGESGCGKTTLGKTAIRLHDPTAGRIYFDGEDVSEftdNELFDFRREAQVIHQDpyQSLNPK 122
                                       789***********************************************9999999************9999**** PP

                                       SBHHHH..............HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                                       xxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                          ABC_tran  74 ltvren..............esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                                        tv++               e+ +++++ l+k gl   ++  +++ ps+LSgG++qrv +aral+ +p++ll+DEp 
  gi|300712868|ref|YP_003738680.1| 123 WTVYRWvkepldvhdigtpeERANKVYDTLEKAGLRP-AQAYAQEYPSELSGGERQRVGIARALALDPSFLLADEPA 198
                                       **999899*********98888888999999999999.666667999*****************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.1   5.7e-22   1.1e-18       1      65 []     250     315 ..     250     315 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 5.7e-22
                         oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd.klekikgeapslerldeGCpFapRCpfaleeC 65 
                                       vE+gp++k++++p+HPYT+aL+ s+p +++  + + ++++ge+p+l++  + C+F++RCp a+++C
  gi|300712868|ref|YP_003738680.1| 250 VEIGPTEKIISDPKHPYTQALVGSMPIINPDIErEPVELEGEVPDLTETMNRCRFYDRCPEAMPSC 315
                                       8******************************99999****************************** PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.031        61       3      24 ..      59      80 ..      58     119 .. 0.73
   2 !   14.9   0.1   9.1e-06     0.018     233     302 ..     167     234 ..     144     235 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.031
                            AAA_21  3 vliGpNgsGKSnLLdaldllar 24
                                      +l G  g+GK++L ++   l++
  gi|300712868|ref|YP_003738680.1| 59 GLAGESGCGKTTLGKTAIRLHD 80
                                      68899********999877765 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 9.1e-06
                            AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                                        ++elS G ++  +++ al+ ++   s+ll DEp + L+ ++ +++l+l+++l++  g   +  +H+ +ll
  gi|300712868|ref|YP_003738680.1| 167 YPSELSGGERQRVGIARALALDP---SFLLADEPASMLDVSIRASILDLFENLQEeFGLTAVYISHDLSLL 234
                                       56788999999989999999888...************************9998889**********9998 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.7e-05     0.035     112     213 ..     137     245 ..      46     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                                       EETTEEE-HHHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHH CS
                                       xxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                             SMC_N 112 kingkevtkkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkv 179
                                        i   e + ++v + le+ag+ +          +LSgGe++ v +a  +A+      ++ l De ++ LD + ++ +
  gi|300712868|ref|YP_003738680.1| 137 DIGTPEERANKVYDTLEKAGLRPAqayaqeypsELSGGERQRVGIARALALD----PSFLLADEPASMLDVSIRASI 209
                                       444445555666666666666666888888888***************9985....469999*************** PP

                                       HHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                                       xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
                             SMC_N 180 aellkekskn..aQfivislreemlekadklvgvtk 213
                                        +l+++ +++     + is++  +l+++   +gv+ 
  gi|300712868|ref|YP_003738680.1| 210 LDLFENLQEEfgLTAVYISHDLSLLKHMCDRIGVMY 245
                                       *****9999944556788999889998877777765 PP

>> z-alpha  Adenosine deaminase z-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.3   8.5e+03      42      55 ..     101     114 ..      99     124 .. 0.83
   2 ?    3.8   0.0     0.029        58       4      28 ..     143     166 ..     141     171 .. 0.91
   3 ?    3.6   0.0     0.034        67       6      36 ..     206     236 ..     202     242 .. 0.85
   4 ?    1.2   0.0      0.19   3.8e+02      49      63 ..     311     325 ..     299     328 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.3
                                       HHHHHHTTSEEEES CS
                           z-alpha  42 Lydlerkgkvyred 55 
                                       L+d  r+++v  +d
  gi|300712868|ref|YP_003738680.1| 101 LFDFRREAQVIHQD 114
                                       89999999998887 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.029
                                       HHHHHHHHHHHHC-TTCECCHHHHH CS
                           z-alpha   4 eqaekilelLeelgekkaatalale 28 
                                       e a+k+ + Le+ g   +a+a+a e
  gi|300712868|ref|YP_003738680.1| 143 ERANKVYDTLEKAG-LRPAQAYAQE 166
                                       7899**********.*******976 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.034
                                       HHHHHHHHHHC-TTCECCHHHHHHHHCC-HH CS
                           z-alpha   6 aekilelLeelgekkaatalalergLstpkr 36 
                                          il+l e+l e+ + ta+  + +Ls  k+
  gi|300712868|ref|YP_003738680.1| 206 RASILDLFENLQEEFGLTAVYISHDLSLLKH 236
                                       668*****************99999997776 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.19
                                       TSEEEESSSSEEEEE CS
                           z-alpha  49 gkvyredgtPPlWfl 63 
                                       ++  ++dg PP+  +
  gi|300712868|ref|YP_003738680.1| 311 AMPSCQDGEPPMFTV 325
                                       56679******9766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     6e-05      0.12      10      70 ..      60     139 ..      54     235 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
                            AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee..................erpevvfvtlpsstssk.dllrellralgle 67 
                                       + GesG+GKTtl ++  + +d  a   +                  ++++v++ ++ +s ++k +++r++ + l++ 
  gi|300712868|ref|YP_003738680.1|  60 LAGESGCGKTTLGKTAIRLHDPTAGRIYfdgedvseftdnelfdfrREAQVIHQDPYQSLNPKwTVYRWVKEPLDVH 136
                                       57***************999765544447777777776666666666666665555555544413466666666655 PP

                            AAA_22  68 lka 70 
                                         +
  gi|300712868|ref|YP_003738680.1| 137 DIG 139
                                       555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00014      0.29      11      38 ..      44      71 ..      41      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                            AAA_29 11 tfdghtieidlkgatlltGpsGsGKSTl 38
                                        dg t+++++ +++ l+G+sG GK+Tl
  gi|300712868|ref|YP_003738680.1| 44 AVDGVTLSVKEGETFGLAGESGCGKTTL 71
                                      6788999999777999***********8 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5    0.0011       2.3      17      37 ..      53      73 ..      46      76 .. 0.88
   2 ?    0.2   0.0      0.19   3.8e+02     139     163 ..     204     229 ..     195     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0011
                            ATPase 17 pegrvvlitGepGtGKtifal 37
                                       eg++  ++Ge+G+GKt++++
  gi|300712868|ref|YP_003738680.1| 53 KEGETFGLAGESGCGKTTLGK 73
                                      5788999************97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.19
                            ATPase 139 vaReilrqlvrvl.kklgvTailvse 163
                                        +R+ +  l++ l ++ g+Ta+ +s 
  gi|300712868|ref|YP_003738680.1| 204 SIRASILDLFENLqEEFGLTAVYISH 229
                                       6899*********999******9986 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0002       0.4      19      49 ..      56      84 ..      39      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
                                      CSEEEEEEESTTSSHHHHHHHHCCSHCCCCC CS
                            NB-ARC 19 qslvvalvGmgGvGKttlakqilnksdeveg 49
                                      +    +l G  G+GKttl k +++ +d + g
  gi|300712868|ref|YP_003738680.1| 56 E--TFGLAGESGCGKTTLGKTAIRLHDPTAG 84
                                      4..5799*************99988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2454.42
//
Query:       gi|300712869|ref|YP_003738681.1|  [L=252]
Description: Creatininase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-56  191.0   0.0    2.5e-56  190.9   0.0    1.0  1  Creatininase  Creatinine amidohydrolase


Domain annotation for each model (and alignments):
>> Creatininase  Creatinine amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.0   1.4e-60   2.5e-56       1     239 [.       9     241 ..       9     243 .. 0.92

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 1.4e-60
                      Creatininase   1 eeltwpeveea.lkeddvailPvGstEqHGphlplgtDtliaealaervaeklgakalvlPtlpyGvseehlgfpGT 76 
                                       eeltw+e+e a ++  +++++P Gs+EqHGphl +  D+  aea+  ++a++lg ++lv+P++  G+s++h+gf GT
  gi|300712869|ref|YP_003738681.1|   9 EELTWMEIESAiDRGVKTILVPAGSVEQHGPHLGILKDAAWAEAMGVELAKELG-DTLVAPVIRPGCSDHHMGFSGT 84 
                                       69*********67777*********************************9*998.56******************** PP

                      Creatininase  77 islspetliavlrdileslarhGfrrivlvngHggnsaalkeaarelraehdaaavrvtaaekelaaalkleeaae. 152
                                       is++petl++vl+d+++sl  hGf++ivl++ Hggn +a++ ++  +++e da+ +++ ++e  +++       +e 
  gi|300712869|ref|YP_003738681.1|  85 ISYRPETLMRVLEDYCRSLDSHGFEHIVLFSLHGGNFPAMNAILPSIADEVDAQIITLLDKELLIDP------LMEs 155
                                       ***************************************************8888877777777777......4444 PP

                      Creatininase 153 aaeeseeeegggHAgelEtSlmlalrpelVrmdraedpeeaklakegvstaedaeelspsGvlGdpskataekGeal 229
                                        a+ + ++e+ gH+g + t+ +++lrp+lV +++++++   + ++    ++++ +++++ G +Gdp+ at+e Ge++
  gi|300712869|ref|YP_003738681.1| 156 LAQMEIPSEARGHGGAAVTASVWYLRPDLVLEEEFTPGFIGDVSTS-KLMTNGLDAVTELGHMGDPTYATRELGEEV 231
                                       56667777788**************************999988887.88889999999******************* PP

                      Creatininase 230 leaaveelae 239
                                       + ++v ++ e
  gi|300712869|ref|YP_003738681.1| 232 TTRLVSAFSE 241
                                       ****998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1898.86
//
Query:       gi|300712870|ref|YP_003738682.1|  [L=449]
Description: deacylase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-31  110.2   0.0    1.4e-31  109.8   0.0    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    7.9e-20   70.8   0.0    2.4e-19   69.2   0.0    1.8  2  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   1.6e-35   1.4e-31       2     206 ..      80     441 ..      79     442 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 1.6e-35
                                       EEEES-BSSTTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTH CS
                                       xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20   2 lgsHlDvVpeeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgG 77 
                                       +++H+Dv+p++ +d+w++  f++t+++  +y+rGa d+kg+ l+++ a+ al +   +++ +++ll+++ EE   +G
  gi|300712870|ref|YP_003738682.1|  80 FYGHYDVQPPGVSDDWESpAFEPTIRNESIYARGAGDNKGQFLTHVFAFDALSRIADDTDVNVKLLVEGGEE---SG 153
                                       89*******888899*********************************************************...56 PP

                                       HHHHHH...HHHTTTCESEEEEEEEESSSBTCHSTETEEEE.................................... CS
                                       xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
                     Peptidase_M20  78 akalle...gleerekvdavfelhieepgileagklaigvv.................................... 115
                                       +  l+e    +   e +d  + + + ++++  + k  ++++                                    
  gi|300712870|ref|YP_003738682.1| 154 STGLIEylgDAP-TELADTDL-VYVADGPMHASRK--PTIIygnrgilsyqldlktadadlhsgnfggpipnaanel 226
                                       666666332333.22333333.3377777777555..5666678888888888888888888888888888888888 PP

                                       ............................................................................. CS
                                       ............................................................................. RF
                     Peptidase_M20 116 ............................................................................. 115
                                                                                                                    
  gi|300712870|ref|YP_003738682.1| 227 iavvssmfdgdkvtvegfsenvnisatdrelvedipidemalksdlgikefatddpyyerllleptltvnglssgye 303
                                       8888************************************************************************* PP

                                       ..........................................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTS CS
                                       ..........................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20 116 ..........................................kvevelleggapvtln.dsplvkalaeaaeelfge 149
                                                                                 ++ev++ ++ +p++++ d p ++ la+a+++++g 
  gi|300712870|ref|YP_003738682.1| 304 gegkktiiphqatvkldsrlvpdqdpdqvferitnhvkrenpDIEVTKMGSFPPMKTPiDTPAARPLAAALKAVWGM 380
                                       *****************************************88****99***************************9 PP

                                       CEEEE.EESSSBHTHHHH...TTTEEEEE.EE.SSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                                       xxxxx.xxxxxxxxxxxx...xxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20 150 kveli.vsgpggtdarff...agiptvmi.fg.pgsglaHspnEyvdledlekgikvlarlle 206
                                       ++ ++   g g+  a++f   +++p +++ +  p+ ++ HspnE++dl+ +++gi++ ar+l+
  gi|300712870|ref|YP_003738682.1| 381 DPVEMpLLG-GSLPAAHFrtkLNVPVLVVpYAnPD-QGNHSPNEHLDLDCFRNGIETTARFLQ 441
                                       955554999.********96666687766666566.999*********************997 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   2.7e-23   2.4e-19       1     107 [.     191     346 ..     191     348 .. 0.97
   2 ?   -2.4   0.0       0.5   4.4e+03      28      43 ..     431     446 ..     430     448 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 2.7e-23
                                       SEB-EEEEEEEE..EE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC............................ CS
                         M20_dimer   1 ighkGlaggkit..vkgkagHsg.apgagaNAieklarllaeledeegdia.......................... 48 
                                       +g++G++++ +   + + ++Hsg ++g  +NA ++l+ +++++ d ++ +                           
  gi|300712870|ref|YP_003738682.1| 191 YGNRGILSYQLDlkTADADLHSGnFGGPIPNAANELIAVVSSMFDGDKVTVegfsenvnisatdrelvedipidema 267
                                       699*******9999*****************************99966655************************** PP

                                       ...................TCCTCCCCCEECCE-C....CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCC CS
                         M20_dimer  49 ................eerslprttlnvtgiegGs....aknvipdeaeakidiRllpgedpeevleeieeilekea 105
                                                        er l ++tl+v+g+++G+    +k++ip +a++k+d Rl+p +dp++v e+i++++++e+
  gi|300712870|ref|YP_003738682.1| 268 lksdlgikefatddpyYERLLLEPTLTVNGLSSGYegegKKTIIPHQATVKLDSRLVPDQDPDQVFERITNHVKREN 344
                                       **************************************************************************999 PP

                                       ST CS
                         M20_dimer 106 pe 107
                                       p+
  gi|300712870|ref|YP_003738682.1| 345 PD 346
                                       86 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.5
                                       -HHHHHHHHHHCSCTT CS
                         M20_dimer  28 NAieklarllaelede 43 
                                       N ie  ar+l++++d+
  gi|300712870|ref|YP_003738682.1| 431 NGIETTARFLQKFPDD 446
                                       678999*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3566.38
//
Query:       gi|300712871|ref|YP_003738683.1|  [L=45]
Description: hypothetical protein HacjB3_17748 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       203  (0.0113224); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.27s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 347.09
//
Query:       gi|300712872|ref|YP_003738684.1|  [L=159]
Description: creatinine amidohydrolase, partial [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-27   96.6   0.0    1.7e-27   96.4   0.0    1.0  1  Creatininase  Creatinine amidohydrolase


Domain annotation for each model (and alignments):
>> Creatininase  Creatinine amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.0   9.7e-32   1.7e-27      86     240 ..       2     151 ..       1     152 [. 0.85

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 9.7e-32
                      Creatininase  86 avlrdileslarhGfrrivlvngHggnsaalkeaarelraehdaaavrvtaaekelaaalkleeaae..aaeeseee 160
                                       +v+r +++sl  hGf+ ivlv  Hggn  ++k +a ++++e +  ++ + + +++++        +e  ++   e +
  gi|300712872|ref|YP_003738684.1|   2 DVIRSYCRSLDAHGFEYIVLVPTHGGNFGPVKTVAPDIARELESTVIALADLDEHMQL------LNEglSEAGIEYD 72 
                                       799***************************************6666544333333333......3333344444455 PP

                      Creatininase 161 egggHAgelEtSlmlalrpelVrmdraedpeeaklakegvstaedaeelspsGvlGdpskataekGealleaaveel 237
                                       ++ +HAg +Et+++la+++ lVr +++e+++e + +++    +e++++++++GvlGdp++at ++G+ +++ +ve  
  gi|300712872|ref|YP_003738684.1|  73 QDVIHAGAAETAMVLAIDEGLVRVENIEPGPEGEISTA-RLLSEGFKSITENGVLGDPTRATSDAGNVIIQNVVETY 148
                                       599**************************999888777.999*********************************99 PP

                      Creatininase 238 ael 240
                                       +e 
  gi|300712872|ref|YP_003738684.1| 149 VEH 151
                                       875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1143.47
//
Query:       gi|300712873|ref|YP_003738685.1|  [L=317]
Description: predicted membrane protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-62  208.7  31.4    1.2e-54  184.8  19.2    2.0  2  Lys_export  Lysine exporter LysO


Domain annotation for each model (and alignments):
>> Lys_export  Lysine exporter LysO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   4.3   1.9e-11   3.3e-07       2      81 ..       8      88 ..       7      95 .. 0.91
   2 !  184.8  19.2   6.6e-59   1.2e-54       2     189 ..     126     314 ..     125     315 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.9e-11
                        Lys_export  2 laliaGillGlllllea.elleeelseylLylLlflvGislgsskelleklkklnlkllllplatilgsllggllaall 79
                                      +al++G +lG++l ++  +++ + ++ + L +Ll+ +G +lg ++++l+ l++++ ++l+l l ti+gs++   l  ++
  gi|300712873|ref|YP_003738685.1|  8 IALLVGGVLGYYLPFSRtQQIGDGIIFVGLAILLIAIGAQLGGDDQILQDLNTIGGSALVLCLGTIIGSIMCVYLSLVI 86
                                      7899*******9988887889999**********************************************998887777 PP

                        Lys_export 80 lg 81
                                      ++
  gi|300712873|ref|YP_003738685.1| 87 TS 88
                                      65 PP

  == domain 2  score: 184.8 bits;  conditional E-value: 6.6e-59
                        Lys_export   2 laliaGillGlllllea.elleeelseylLylLlflvGislgsskelleklkklnlkllllplatilgsllggllaa 77 
                                       ++l++G+ ++ ++l+e+  +    +s+y+L++Llf vG+++gs++e l+++ ++++ +ll+p+a+++gs+lgg+l++
  gi|300712873|ref|YP_003738685.1| 126 ISLVVGLRFSTIGLSEHlVTSLGFISDYALLALLFGVGVTVGSDTEALRHIVHIGWAVLLIPVAVAVGSILGGVLVG 202
                                       5789999999988888855566778********************9******************************* PP

                        Lys_export  78 lllglslkeslavasGfGwYSLsgilitelkgaelGtiallanllREllalllipllakrfgklaaisvaGatsmDt 154
                                       ++++++++++ ava+GfGwYS++g+++ +l+g +lG+ia+lanl+RE++++l++p + k+fg +++i+++Gat+mD+
  gi|300712873|ref|YP_003738685.1| 203 MVINMPVTHAAAVAAGFGWYSYAGVVVFDLGGMKLGAIAFLANLFREIVTFLVLPAVTKYFGGVTSIAPGGATTMDV 279
                                       ***************************************************************************** PP

                        Lys_export 155 tLPiitkssgkevvvlaivhGvilsllvPilvslf 189
                                       tLP+i+++sg+++v+ a+++G++ls+++ +l++++
  gi|300712873|ref|YP_003738685.1| 280 TLPLIQRVSGEKFVIPALINGLVLSVTATVLIPII 314
                                       *********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2385.22
//
Query:       gi|300712874|ref|YP_003738686.1|  [L=105]
Description: hypothetical protein HacjB3_17763 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-14   51.4   0.0      7e-14   51.4   0.0    1.4  2  Cons_hypoth698  Conserved hypothetical protein 698


Domain annotation for each model (and alignments):
>> Cons_hypoth698  Conserved hypothetical protein 698
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   3.9e-18     7e-14     232     303 ..      12      83 ..       3      84 .. 0.90
   2 ?   -2.8   0.5      0.12   2.2e+03      24      36 ..      92     104 ..      85     105 .] 0.47

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 3.9e-18
                    Cons_hypoth698 232 esetkeakitiPwFvlgFlvvallntlvllpselvsalktlstlllvmalaAlglktdlkalkkaglkplll 303
                                       + ++k+ + t+P+Fv+gF +v++++   +l +e++  l+++s++l+++a+a+lgl++ ++ l+++glkp+ll
  gi|300712874|ref|YP_003738686.1|  12 SFSIKAIRDTFPKFVIGFFGVMIIANSGILSNEQIISLENVSNWLFLLAFAGLGLEIRFETLRNTGLKPILL 83 
                                       445566699*************9999999999*************************************997 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.12
                    Cons_hypoth698  24 aklsalllAillG 36 
                                          s +l+A+l+G
  gi|300712874|ref|YP_003738686.1|  92 STTSLILIAVLFG 104
                                       3334445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 846.95
//
Query:       gi|300712875|ref|YP_003738687.1|  [L=493]
Description: hypothetical protein HacjB3_17768 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.1e-132  439.6  36.8   1.2e-131  439.3  36.8    1.1  1  TctA       Tripartite tricarboxylate transporter TctA family
  ------ inclusion threshold ------
       0.41   10.3   6.4       0.27   10.9   3.3    2.1  2  TMP_2      Prophage tail length tape measure protein


Domain annotation for each model (and alignments):
>> TctA  Tripartite tricarboxylate transporter TctA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.3  36.8  1.3e-135  1.2e-131       1     409 []      18     438 ..      18     438 .. 0.96

  Alignments for each domain:
  == domain 1  score: 439.3 bits;  conditional E-value: 1.3e-135
                              TctA   1 LllvllGvllGtliGllPGlhatlavalllpltfgldpeaalilllgiyvgaifggsipaillgvPGtpssvatvld 77 
                                       Lll+ ++v++G++ G++PG++ t++va+ lp+t+ + pe+a+++l++iyvga++gg+ipa+l+++PGt+ ++atvld
  gi|300712875|ref|YP_003738687.1|  18 LLLISIAVCIGIVAGAIPGFTGTNTVAIALPFTLAMAPETAVVFLAAIYVGANYGGAIPAVLINTPGTAGATATVLD 94 
                                       7999************************************************************************* PP

                              TctA  78 gyplakqGrageAlrlaaigSfiGglvsvllllllapllakvalkfgpaeyfalillglvliailseksllkglial 154
                                       +yp+ +qG+ag+A+++++ +S++Ggl s+++l+ll+ ++a++a+ fg++e+fal ++g++++a++ +++++kgl+++
  gi|300712875|ref|YP_003738687.1|  95 AYPMSQQGKAGQAIGISIAASVFGGLTSAIFLVLLINPVAEIAFLFGQPEFFALSMFGIIALASVLGDNIAKGLLSG 171
                                       ***************************************************************************** PP

                              TctA 155 llglllgtvgldpnsgtpRftfgsielldgislvpvliGlFgiselltsleskskip............lslkdlk. 218
                                       l+gll+++++ldp++g+ R++fg +el++ ++++p+++GlF+isell+ +++++ ++              +   + 
  gi|300712875|ref|YP_003738687.1| 172 LFGLLIAAITLDPVTGQRRLDFGFPELYSDLPFIPIIVGLFAISELLYLIKKEKISDtdidvdsydnvfEGV---Qy 245
                                       **************************************************8655444888877766543122...22 PP

                              TctA 219 ..kslptilrgsliGtivGilPgvGasiaaflayavakrlskkpekfgkgaiegvaapeaannaaaggaliplltlg 293
                                         k+  +++r + iGti+G +Pg+G s+a+f++ ++akr s++p++fgkg++egv+a+ea+nna++  +lip+l+lg
  gi|300712875|ref|YP_003738687.1| 246 alKNPFQLFRATSIGTIIGSIPGAGTSVANFISWGEAKRASDNPDQFGKGNPEGVIASEASNNAVTSSSLIPTLVLG 322
                                       23567779********************************************************************* PP

                              TctA 294 ipgsgvaavllgallihglqpgpeLftenpelvyallasllianvlllvlgllliklfakllkipkelLlpiilvll 370
                                       ipgsg++av+l+all+hglqpgp+L++     + a+++sl+ an++ll+++l++++++++++ +p+++L+piilvl+
  gi|300712875|ref|YP_003738687.1| 323 IPGSGTTAVMLAALLLHGLQPGPQLMEVFGAEATAIMLSLIAANIVLLFFALAISRYIVRVVLLPTQWLVPIILVLT 399
                                       ***************************************************************************** PP

                              TctA 371 vigayalnnslfdvlvmlifgvlGlllrrlgvplaplvl 409
                                       vig+yaln+slfd ++m++fgvlG+ +r  +++l+plvl
  gi|300712875|ref|YP_003738687.1| 400 VIGVYALNSSLFDAWFMILFGVLGFTMREHDYSLIPLVL 438
                                       *************************************96 PP

>> TMP_2  Prophage tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.3   3.1e-05      0.27      53     127 ..      31     105 ..      25     142 .. 0.79
   2 ?   -0.6   0.1     0.096   8.6e+02      42      60 ..     341     358 ..     334     379 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.1e-05
                             TMP_2  53 GGigpalkalggyvlslisPltla..AaavgalalAyykgakearefnkaliltGnaaGlTasqLeamaesiaeagg 127
                                       +G+ p +++     +++  P+tla    +++++ +A+y ga+   ++   li+t ++aG+Ta  L+a+  s ++ +g
  gi|300712875|ref|YP_003738687.1|  31 AGAIPGFTGTN--TVAIALPFTLAmaPETAVVFLAAIYVGANYGGAIPAVLINTPGTAGATATVLDAYPMSQQGKAG 105
                                       57777777773..4555669999986668888999******************************997666655555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.096
                             TMP_2  42 lqQGgQikdmFGGigpalk 60 
                                       lq G+Q+ ++FG + +++ 
  gi|300712875|ref|YP_003738687.1| 341 LQPGPQLMEVFG-AEATAI 358
                                       6899*****997.333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3611.68
//
Query:       gi|300712876|ref|YP_003738688.1|  [L=256]
Description: ArcR family transcription regulator [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-29   99.9   0.0    1.5e-28   99.2   0.0    1.4  1  IclR            Bacterial transcriptional regulator
    1.2e-11   44.2   0.0    9.4e-11   41.4   0.0    2.4  3  HTH_IclR        IclR helix-turn-helix domain
    0.00015   21.6   0.2    0.00054   19.8   0.0    1.9  2  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0038   16.7   0.0      0.012   15.1   0.0    1.9  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0057   16.7   0.0      0.012   15.7   0.0    1.5  1  HTH_20          Helix-turn-helix domain
     0.0088   15.9   0.0      0.019   14.8   0.0    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.021   14.9   0.3       0.06   13.5   0.1    1.8  2  DUF2250         Uncharacterized protein conserved in archaea 
      0.026   14.3   0.0      0.091   12.6   0.0    1.9  2  HTH_23          Homeodomain-like domain
      0.028   14.6   0.0      0.068   13.4   0.0    1.7  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.031   14.8   0.1      0.087   13.3   0.0    1.7  2  HTH_27          Winged helix DNA-binding domain
      0.038   13.9   0.1       0.21   11.6   0.0    2.4  2  HTH_11          HTH domain
      0.046   13.7   2.0       0.12   12.4   0.1    2.4  3  HTH_45          Winged helix-turn-helix
      0.082   12.8   0.0       0.18   11.8   0.0    1.5  1  MarR            MarR family


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   1.1e-31   1.5e-28       5     127 ..     128     250 ..     124     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 1.1e-31
                                       ETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEE CS
                              IclR   5 avsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrc 81 
                                          +iG++  l+++a GKa+La+ +++++++++ + +l + t++Tit+ e+L++eL+++ e+Gy++++eE+  g+r 
  gi|300712876|ref|YP_003738688.1| 128 TDRWIGEQRYLHSSAGGKAILAYSETRRVKKIIDQIGLPAETQNTITESEKLFRELEEITERGYSINNEESIDGLRG 204
                                       5679************************************************************************* PP

                                       EEEEEE-TTSSEEEEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHH CS
                              IclR  82 iAapifdasgevvaAvsvsgptarlteeelkeellalvreaArkis 127
                                       i++p+ +   + ++A s+sgp++r++ + ++eel  l+  +A++++
  gi|300712876|ref|YP_003738688.1| 205 IGVPVIGPDDMIFGAFSISGPIQRFSGDWFQEELPDLLLGTANELE 250
                                       *******************************************986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   6.8e-14   9.4e-11       5      51 ..      17      62 ..      13      63 .. 0.92
   2 ?   -1.4   0.0       1.5   2.1e+03      20      29 ..      92     101 ..      81     102 .. 0.83
   3 ?   -1.8   0.0         2   2.8e+03      20      31 ..     155     166 ..     147     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 6.8e-14
                                      HHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
                          HTH_IclR  5 alaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                                      ++ i+++l+ ++++  l++++ ++++pkSt++ +L tL+e Gy+ ++
  gi|300712876|ref|YP_003738688.1| 17 GFKIIELLRDQDGG-YLTDVSTQLDIPKSTAYQYLDTLEEIGYLVKE 62
                                      89***********9.6****************************875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
                                       BHHHHHHHHT CS
                          HTH_IclR  20 tlselArrtg 29 
                                        +++lA++tg
  gi|300712876|ref|YP_003738688.1|  92 MVQQLADKTG 101
                                       4899999998 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2
                                       BHHHHHHHHTS- CS
                          HTH_IclR  20 tlselArrtglp 31 
                                       +++ + +++glp
  gi|300712876|ref|YP_003738688.1| 155 RVKKIIDQIGLP 166
                                       688899999999 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.9e-07   0.00054      26      59 ..      33      66 ..      21      87 .. 0.89
   2 ?   -1.4   0.0       1.6   2.2e+03      17      38 ..     148     169 ..     146     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.9e-07
                                      CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTT CS
                              TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgrp 59
                                      ++++ +l++p+s++Y++L  Le+ G+  +e++++
  gi|300712876|ref|YP_003738688.1| 33 TDVSTQLDIPKSTAYQYLDTLEEIGYLVKEDSKY 66
                                      79************************99999886 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.6
                                       HHHHCCCHHCHHCCCTTSSCHC CS
                              TrmB  17 Llklgpatadeiaeelgvprsk 38 
                                       L  ++  ++++i  ++g+p  +
  gi|300712876|ref|YP_003738688.1| 148 LAYSETRRVKKIIDQIGLPAET 169
                                       5577889999999999999876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.8e-06     0.012       3      47 ..      15      59 ..      14      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.8e-06
                            HTH_24  3 etdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                                      +t +kI+elL+++ +   ++++ +l++++st  ++l+ Lee G++
  gi|300712876|ref|YP_003738688.1| 15 KTGFKIIELLRDQDGGYLTDVSTQLDIPKSTAYQYLDTLEEIGYL 59
                                      57799*******9999999************************96 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.5e-06     0.012      14      57 ..      19      62 ..      15      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.5e-06
                                      HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
                            HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                                      +i  +L++ +g  ++++  +ld++k+t+++ L++Lee g++  +
  gi|300712876|ref|YP_003738688.1| 19 KIIELLRDQDGGYLTDVSTQLDIPKSTAYQYLDTLEEIGYLVKE 62
                                      78999999*****************************9998665 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.4e-05     0.019       6      45 ..      19      59 ..      16      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
                                      HHHHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                             HTH_5  6 kILklLaege.lcvcelaeelglsqstvShHLkkLreaGLV 45
                                      kI+ lL+++   + ++ + +l++++st  ++L  L+e G++
  gi|300712876|ref|YP_003738688.1| 19 KIIELLRDQDgGYLTDVSTQLDIPKSTAYQYLDTLEEIGYL 59
                                      899*****8889*************************9986 PP

>> DUF2250  Uncharacterized protein conserved in archaea (DUF2250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.3e-05      0.06       4      56 ..      11      63 ..       8      70 .. 0.89
   2 ?   -2.0   0.0       2.9     4e+03      44      65 ..     158     178 ..     148     188 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
                           DUF2250  4 leedelalkvlkhlkkanvdYaksiakeleipleevrellkkLeelGLlerve 56
                                      ++  +  +k+++ l+  +  Y   ++ +l+ip++ + ++l+ Lee+G l + +
  gi|300712876|ref|YP_003738688.1| 11 IQSLKTGFKIIELLRDQDGGYLTDVSTQLDIPKSTAYQYLDTLEEIGYLVKED 63
                                      67788999***************************************776655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.9
                           DUF2250  44 kkLeelGLlervegktikrtea 65 
                                       k + ++GL  + ++ ti ++e+
  gi|300712876|ref|YP_003738688.1| 158 KIIDQIGLPAETQN-TITESEK 178
                                       44555565544433.3333433 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.6e-05     0.091       9      42 ..      19      54 ..      18      58 .. 0.88
   2 ?   -2.5   0.0       3.7   5.2e+03      10      31 ..     146     167 ..     145     169 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
                            HTH_23  9 rillllae..GlsvreIAreLgvsrrTvyrwlkryr 42
                                      +i+ ll++  G   ++++++L+++++T y++l + +
  gi|300712876|ref|YP_003738688.1| 19 KIIELLRDqdGGYLTDVSTQLDIPKSTAYQYLDTLE 54
                                      6899999789*********************98864 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.7
                            HTH_23  10 illllaeGlsvreIAreLgvsr 31 
                                       ++l++ e  +v++I ++ g + 
  gi|300712876|ref|YP_003738688.1| 146 AILAYSETRRVKKIIDQIGLPA 167
                                       7888888777888877777665 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.9e-05     0.068      26      55 ..      33      62 ..      20      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
                                      HHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
                    Fe_dep_repress 26 kdlaerLnvspssVsemlkkLekdGyveye 55
                                      +d++  L++ +s++ + l  Le+ Gy++ e
  gi|300712876|ref|YP_003738688.1| 33 TDVSTQLDIPKSTAYQYLDTLEEIGYLVKE 62
                                      79************************9876 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.3e-05     0.087      11      53 ..      23      64 ..      19      73 .. 0.87
   2 ?   -2.6   0.0       5.8     8e+03      24      43 ..     183     203 ..     174     207 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.3e-05
                            HTH_27 11 lirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgd 53
                                      l+r  +++  l+d++  l++ +s++   l+ L+e G+++++ +
  gi|300712876|ref|YP_003738688.1| 23 LLR-DQDGGYLTDVSTQLDIPKSTAYQYLDTLEEIGYLVKEDS 64
                                      555.7888889***************************77765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.8
                            HTH_27  24 lcgrlnvedshis.yslkkLt 43 
                                       l + + +++s +  +s++ L 
  gi|300712876|ref|YP_003738688.1| 183 LEEITERGYSINNeESIDGLR 203
                                       444444444444446666665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.21       4      46 ..      19      60 ..      16      66 .. 0.85
   2 ?   -3.0   0.0       5.3   7.2e+03      36      47 ..     199     210 ..     198     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                            HTH_11  4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpI 46
                                      +i+elL++++g     + + +L++ ++t ++++++Lee+g+ +
  gi|300712876|ref|YP_003738688.1| 19 KIIELLRDQDGG-YLTDVSTQLDIPKSTAYQYLDTLEEIGYLV 60
                                      788999888885.6668899********************876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.3
                            HTH_11  36 IkaLeelgvpIe 47 
                                       I+ L+ +gvp++
  gi|300712876|ref|YP_003738688.1| 199 IDGLRGIGVPVI 210
                                       677999999997 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.5e-05      0.12      11      58 ..      20      68 ..      13      73 .. 0.85
   2 ?   -0.5   0.0      0.89   1.2e+03      48      64 ..     107     124 ..      85     130 .. 0.60
   3 ?   -2.7   0.0       4.5   6.2e+03      57      63 ..     185     191 ..     168     196 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.5e-05
                            HTH_45 11 ILeais.egeakkTkimykanLsykllnkYLdmLvekglikkskekYvl 58
                                      I e ++ +++   T +  + ++  +++ +YLd+L e g++ k+++kY+l
  gi|300712876|ref|YP_003738688.1| 20 IIELLRdQDGGYLTDVSTQLDIPKSTAYQYLDTLEEIGYLVKEDSKYEL 68
                                      4444443777888999999999999**********************87 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.89
                            HTH_45  48 likk.skekYvlTekGle 64 
                                       li++   + Y  T++G++
  gi|300712876|ref|YP_003738688.1| 107 LIEEhGRGIYLYTDQGSQ 124
                                       464437888999999986 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.5
                            HTH_45  57 vlTekGl 63 
                                       ++Te+G 
  gi|300712876|ref|YP_003738688.1| 185 EITERGY 191
                                       4666665 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00013      0.18       5      52 ..      17      64 ..      15      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
                                      HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
                              MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsks 52
                                       f+i+++l++q++ ++++   +l + kst+   ld+Le+ G++ ++ s
  gi|300712876|ref|YP_003738688.1| 17 GFKIIELLRDQDGGYLTDVSTQLDIPKSTAYQYLDTLEEIGYLVKEDS 64
                                      599***************************************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1837.98
//
Query:       gi|300712877|ref|YP_003738689.1|  [L=250]
Description: amidohydrolase 2 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-28   98.6   0.1    6.2e-28   98.4   0.1    1.0  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.1   3.4e-32   6.2e-28      68     289 ..       3     246 ..       1     248 [. 0.87

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 3.4e-32
                                       HHHHHHHHHHHHHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-E CS
                      Amidohydro_2  68 gannrvlaeaakrpdrfvggaavvpldpedaaaeleraveelgfkGvrlnphvggddllgdrldrpifealeelglp 144
                                       ++n+ ++++ ++ +d f g+a ++ + p++aa+el r  +e +++G  + +  ++ +l ++++d  +++a+++ +++
  gi|300712877|ref|YP_003738689.1|   3 AYNDLLIDQYLDEYDHFYGLASLATQKPDKAAEELDRLGDEDQIVGAYIATTGPNPPLGDPEYD-ILYQAAQDNDIH 78 
                                       699*******************************************999998776666666666.************ PP

                                       EEEE.......................CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEESGGGTTTTCHHHHHHH CS
                      Amidohydro_2 145 vdihtGps...................pewlfggpqettraiqplllsgvarkfPnlkivlaHgGgpserlraalel 202
                                       +  h G+                      ++++ ++  + +  +ll+ gv +kfP+l++ + ++G +     +++ +
  gi|300712877|ref|YP_003738689.1|  79 IAYH-GSGgafmfefprqnqsfekfieVHTMAHTWSQMM-TLSSLLVHGVPEKFPDLNFTFLEAGIG-----WIPMM 148
                                       ****.55589*************9999777777777777.6789999********************.....77777 PP

                                       HHHHHHCCEEECCGHHH..................SSEEECCHHCHHHHHHHHHHH-GGGEEEE--BTSTTSTSCTT CS
                      Amidohydro_2 203 larrpnvyvklsglyte..................llyfdspladppalarlieavgpdrilfGsDyPhptleaepe 261
                                       + r++  y   s+   +                  +++++ ++ dp+++++li++vg d + f+sDyPh++++++++
  gi|300712877|ref|YP_003738689.1| 149 MFRLNKEY---SIRR-SeapllekspeeyirefyfASQPIGEANDPKHMKQLIDIVGVDSLTFASDYPHWDFDHPDA 221
                                       77777777...4422.25788889999999999999************************************77776 PP

                                       HHHHCHHHHHSSHHHHHHHHTHHHHHHC CS
                      Amidohydro_2 262 alalldlvallsdeerekilggNAarly 289
                                         + l   +   +e r+ki+++NAa  +
  gi|300712877|ref|YP_003738689.1| 222 LEQYLS-TF--NEEGRQKIMYKNAADAF 246
                                       666665.45..9*************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1876.14
//
Query:       gi|300712878|ref|YP_003738690.1|  [L=121]
Description: Rieske (2Fe-2S) iron-sulfur domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-15   54.3   0.1    1.3e-13   50.7   0.1    2.0  1  Rieske    Rieske [2Fe-2S] domain
    3.6e-13   49.3   0.0    4.1e-06   26.7   0.0    2.0  2  Rieske_2  Rieske-like [2Fe-2S] domain
  ------ inclusion threshold ------
      0.044   13.4   0.0      0.063   12.9   0.0    1.2  1  DUF1264   Protein of unknown function (DUF1264)


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.1   2.2e-17   1.3e-13       4      88 ..       5     108 ..       2     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 2.2e-17
                                       EEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BC............GGSEEE............ CS
                            Rieske   4 avakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgapl............segkid............ 56 
                                        va++++++eg    +++ g+++ v++  dge+yA+++ C H+  p+                 d            
  gi|300712878|ref|YP_003738690.1|   5 IVAPADELEEGGRIITELNGREICVFN-IDGEYYAYNNWCAHQAGPIcegnitgtteasF----Dpeslevsldycr 76 
                                       58899**********************.6******************5555555555550....0555555555666 PP

                                       TT.EEE-TTT--EEE.TTSBEEE-TTHHHEEEE CS
                            Rieske  57 ekgvleCpcHgwayd.adGkvikgPaprplaty 88 
                                       e++ l+Cp+Hgw+y+ ++Gk++   +  +l++y
  gi|300712878|ref|YP_003738690.1|  77 EGEILNCPWHGWEYEvKSGKCLSRQKV-QLPSY 108
                                       9999*****************986544.46665 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.2e-08   0.00025       5      60 ..       6      59 ..       4      63 .. 0.91
   2 !   26.7   0.0   6.8e-10   4.1e-06      61     103 ..      77     119 ..      71     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.2e-08
                                      EEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECT CS
                          Rieske_2  5 vckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkk 60
                                      v++ ++l ++ ++   ++g+++++f + ++e yA +n++   +a ++ +G +  ++
  gi|300712878|ref|YP_003738690.1|  6 VAPADELEEGGRIITELNGREICVFNI-DGEYYAYNNWCAH-QAGPICEGNITGTT 59
                                      77899**********************.9**********99.8*******997665 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 6.8e-10
                                       TCEEEE-TTT--EEETTT-BBSS-TTSB-BEE-EEESTSEEEE CS
                          Rieske_2  61 gelvvasPlykqkfdLktGecledeevslkvypvrvedgkvev 103
                                       +  ++ +P ++ +++ k+G+cl+ ++v+l+ y+vrve++ + v
  gi|300712878|ref|YP_003738690.1|  77 EGEILNCPWHGWEYEVKSGKCLSRQKVQLPSYAVRVEGEDIIV 119
                                       556789*********************************9988 PP

>> DUF1264  Protein of unknown function (DUF1264)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     1e-05     0.063      76     107 ..      85     116 ..      81     121 .] 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
                           DUF1264  76 WHsHeyEvksGllvlpakagvpeaaeeaelee 107
                                       WH  eyEvksG  + ++k ++p+ a + e e+
  gi|300712878|ref|YP_003738690.1|  85 WHGWEYEVKSGKCLSRQKVQLPSYAVRVEGED 116
                                       ****************9999999988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.29s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 869.39
//
Query:       gi|300712879|ref|YP_003738691.1|  [L=405]
Description: major facilitator superfamily MFS_1 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-45  153.5  53.1      8e-34  117.1  30.8    2.0  2  MFS_1       Major Facilitator Superfamily
    3.9e-10   39.2  34.0    1.8e-09   37.0  11.6    2.5  3  Sugar_tr    Sugar (and other) transporter
    2.3e-09   36.6  24.6    2.5e-09   36.5  11.1    2.2  2  MFS_1_like  MFS_1 like family
    1.1e-06   27.5  28.3    1.9e-06   26.7  13.3    2.2  2  MFS_2       MFS/sugar transport protein
  ------ inclusion threshold ------
        1.4    7.1  26.5       0.39    8.9   3.2    3.3  3  OATP        Organic Anion Transporter Polypeptide (OATP) fami
        1.4    9.4   3.4        1.7    9.1   1.3    2.1  2  Goodbye     fungal STAND N-terminal Goodbye domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1  30.8   2.7e-37     8e-34       3     255 ..      25     271 ..      23     274 .. 0.87
   2 !   43.5  19.3   6.2e-15   1.9e-11      30     172 ..     258     399 ..     256     405 .] 0.85

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 2.7e-37
                             MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalgllll 79 
                                       l+ f++ ++r+++ p++  +l++++ +s ++ gll+tl +lg+++a+lp+G l+drfG   +++ g+ +fa++++++
  gi|300712879|ref|YP_003738691.1|  25 LIWFMVQFSRYVFPPLFE-TLQTTYSVSNTQTGLLFTLLMLGYSAAQLPAGILGDRFGEPAIIISGVGIFAAASIVI 100
                                       6679999**********9.******************************************************8888 PP

                             MFS_1  80 lfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpll.ggllasslgWravfy 155
                                       +fa+s++l+ ++ vl G+g+g+  ++++ ++++ +p+ + g+a+g+l +  ++G i++p++  gllass+ W++vf 
  gi|300712879|ref|YP_003738691.1| 101 FFAPSFTLFTAAAVLIGIGTGIHKTVAIPFLSKQYPQ-RTGSALGILDTIGQFGGIVAPVIvVGLLASSFHWSLVFP 176
                                       8867766******************************.********************665156666********** PP

                             MFS_1 156 ilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllpl 232
                                       ++ i+++l++v   l+++  pp++ +++++   +  + ++l+  + ++++d  l ++l+++ lf+f ++g+ ++lpl
  gi|300712879|ref|YP_003738691.1| 177 LISIAGILLAV---LFVRNIPPSSLPPNHTAVAEDSADHSLSL-YLSIFSDTKLAVFLVVMTLFTFSWNGIASFLPL 249
                                       *********99...78877777777777777744455555555.9999999988778888888888*********** PP

                             MFS_1 233 ylqevlglsglllaglllallal 255
                                       ++  + g+s   +a+++++ll++
  gi|300712879|ref|YP_003738691.1| 250 FFTNQKGFS-PAIASTAYSLLFV 271
                                       *********.4566655666655 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 6.2e-15
                             MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpa 105
                                       sp+ ++++++l ++ a++++l++G lsdr+Gr ++ +l +l++ ++ +l++++  +  +llvl + +G+g  ++ p+
  gi|300712879|ref|YP_003738691.1| 258 SPAIASTAYSLLFV-ASLSQLITGNLSDRIGRLPISILLFLVMTVSlILIIIL-ETTIPLLVLTLTMGIGLHGFRPV 332
                                       56666666666555.89*****************7777777777772334444.44445****************** PP

                             MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                                         +++ d+ p +  g ++g++ + + l  +l p+l g+la+  ++ ++f +l + + l+++l+++l 
  gi|300712879|ref|YP_003738691.1| 333 RDSYLMDLIPTSLGGGVLGIVRTVMTLIGALSPALVGYLADISNFAVSFSALIVSLTLGGLLVAFLK 399
                                       *************************************************************988775 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0  11.6   6.1e-13   1.8e-09      36     188 ..      42     189 ..      12     196 .. 0.84
   2 ?   -1.3   0.4      0.25   7.3e+02     354     374 ..     227     247 ..     212     270 .. 0.68
   3 !    7.3  14.4   0.00062       1.8      50     175 ..     263     386 ..     227     404 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 6.1e-13
                                       -SHHHHHH....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHH CS
                          Sugar_tr  36 ksksskee.ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvl 111
                                       ++ +++++ s++++gl++ ++++G  + +l ag+lgdrfG   +++ ++ +f ++++++++a+   s+ +++++ vl
  gi|300712879|ref|YP_003738691.1|  42 ETLQTTYSvSNTQTGLLFTLLMLGYSAAQLPAGILGDRFGEPAIIISGVGIFAAASIVIFFAP---SFTLFTAAAVL 115
                                       233333336999*****************************999999999*************...*********** PP

                                       HHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
                          Sugar_tr 112 vGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                                       +Gig G+  +++  ++s+  p++  +al+ l     +fG +va ++ +gl  +s   +w + + l ++  +ll++l+
  gi|300712879|ref|YP_003738691.1| 116 IGIGTGIHKTVAIPFLSKQYPQRTGSALGILDT-IGQFGGIVAPVIVVGLLASSF--HWSLVFPLISIAGILLAVLF 189
                                       ***********************9999998865.558999999999999955555..5**********998887765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.25
                                       HHHHHHHHHHHTTTTHHHHHH CS
                          Sugar_tr 354 vfialfialfalgwgpvpwvl 374
                                       + +++++ lf+++w+++  +l
  gi|300712879|ref|YP_003738691.1| 227 AVFLVVMTLFTFSWNGIASFL 247
                                       455666677777777776655 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00062
                                       HHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHH CS
                          Sugar_tr  50 livsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmy 126
                                        ++ ++l++a +++l++g l+dr+GR ++ +   +++ ++ +l+++ +   ++  l+v  + +Gig+ ++  +   y
  gi|300712879|ref|YP_003738691.1| 263 STAYSLLFVASLSQLITGNLSDRIGRLPISILLFLVMTVSLILIIILE---TTIPLLVLTLTMGIGLHGFRPVRDSY 336
                                       56678899999*******************999999999999999999...899*********************** PP

                                       HHTTS-SCCH.HHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHH CS
                          Sugar_tr 127 isEiApkklR.galvslyqlaitfGilvaaifglglnktsnadgwrillg 175
                                       +  + p++l  g l+ +  +++ +G l  a +g+  + ++ a+ +  l+ 
  gi|300712879|ref|YP_003738691.1| 337 LMDLIPTSLGgGVLGIVRTVMTLIGALSPALVGYLADISNFAVSFSALIV 386
                                       *********9899*******************998765555555554443 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   5.9     0.002       5.9     219     353 ..      12     145 ..       3     156 .. 0.81
   2 !   36.5  11.1   8.5e-13   2.5e-09     179     383 ..     178     381 ..     151     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.002
                        MFS_1_like 219 lnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvkllii 295
                                       l++l+ + +i++ l+ +++++s  ++   ++     +  snt  G l +l +++     + a  l +++G   ++i 
  gi|300712879|ref|YP_003738691.1|  12 LRLLEYRLIILVSLIWFMVQFSRYVFPPLFETLQTTYSVSNTQTGLLFTLLMLGYSAAQLPAGILGDRFGEPAIIIS 88 
                                       555666666666667777777776666666665589999999999999999999999999999999*********** PP

                        MFS_1_like 296 allayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgl 353
                                       ++ ++++  +++ +  ++ l   + vL gi +g+   +a+ + sk  p+++ +   g+
  gi|300712879|ref|YP_003738691.1|  89 GVGIFAAASIVIFFAPSFTLFTAAAVLIGIGTGIHKTVAIPFLSKQYPQRTGSA-LGI 145
                                       *999999999999999999999999********9999999****9999997654.455 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 8.5e-13
                        MFS_1_like 179 ysallyvlaallvisllvvlilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYL.ke 254
                                       +s + ++la+l+v  +  ++ +++ ++  ++   +sl+  l i+++ ++++fl+v+++  +sw+ i +Fl l++ ++
  gi|300712879|ref|YP_003738691.1| 178 ISIAGILLAVLFVRNIPPSSLPPNHTAVAEDSADHSLSLYLSIFSDTKLAVFLVVMTLFTFSWNGIASFLPLFFtNQ 254
                                       33333444555555555555555555555555566669999*********************************9** PP

                        MFS_1_like 255 lgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllw 331
                                       +g+s  +++++  l  va++  +++  +l +++G   + i+ +l++++ ++l+ i+e +  +l++ +  gi ++ + 
  gi|300712879|ref|YP_003738691.1| 255 KGFSPAIASTAYSLLFVASLSQLIT-GNLSDRIGRLPISILLFLVMTVSLILIIILETTIPLLVLTLTMGIGLHGFR 330
                                       *********************9876.68************************************************* PP

                        MFS_1_like 332 aaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                                        +  +y  +++p sl + + g++ +++  +G  + +l+G +l d+++ ++ F
  gi|300712879|ref|YP_003738691.1| 331 PVRDSYLMDLIPTSLGGGVLGIVRTVMTLIGALSPALVG-YLADISNFAVSF 381
                                       ****************************99999999998.777777776666 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   7.5   0.00053       1.6     257     340 ..      51     132 ..      10     135 .. 0.86
   2 !   26.7  13.3   6.4e-10   1.9e-06     123     386 ..     129     377 ..     127     395 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00053
                             MFS_2 257 ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaal 333
                                       ++++  +++++++++  ++ + +  l  r+g  +++++g  + ++ +++++++   + +lf++++v++g+g+g++ +
  gi|300712879|ref|YP_003738691.1|  51 SNTQTGLLFTLLMLGYSAAQLPAGILGDRFGEPAIIISGVGIFAAASIVIFFA--PSFTLFTAAAVLIGIGTGIHKT 125
                                       45566677778899999999999*****************************9..789999************9999 PP

                             MFS_2 334 lpwsmla 340
                                       ++  +l+
  gi|300712879|ref|YP_003738691.1| 126 VAIPFLS 132
                                       8877765 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 6.4e-10
                             MFS_2 123 pvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervem 199
                                       p+l+k+y +Rt   s   +l ++g +++ + ++++v+ l++        + + l++ l++++g++++vl++++    
  gi|300712879|ref|YP_003738691.1| 129 PFLSKQYPQRTG--SALGILDTIGQFGGIVAPVIVVGLLAS-------SFHWSLVFPLISIAGILLAVLFVRNIPPS 196
                                       677777777773..455678889999999999999999998.......889999********************999 PP

                             MFS_2 200 ..rkkekt.eqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisal 273
                                          +++++ +++++ + l    ++f++ ++ ++l++  l++++ +  ++ l +++t   g+  a++  ++ +   a 
  gi|300712879|ref|YP_003738691.1| 197 slPPNHTAvAEDSADHSLSLYLSIFSDTKLAVFLVVMTLFTFSWNGIASFLPLFFTNQKGFSPAIASTAYSLLFVAS 273
                                       9855555415666678899999**************************************66666666666666677 PP

                             MFS_2 274 lgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelkt 350
                                       l+ ++  +l  r+g+  + +l +l++ v l+l+++l  + ++++lvl++  g+g+ ++  + +s l+d++       
  gi|300712879|ref|YP_003738691.1| 274 LSQLITGNLSDRIGRLPISILLFLVMTVSLILIIIL--ETTIPLLVLTLTMGIGLHGFRPVRDSYLMDLIPT----- 343
                                       89999*******************************..999***************************9955..... PP

                             MFS_2 351 GkrregvffavlsfisklatgiglgvsgllLsafgy 386
                                         +  g + +++ ++  l+++++ +++g+l +++ +
  gi|300712879|ref|YP_003738691.1| 344 --SLGGGVLGIVRTVMTLIGALSPALVGYLADISNF 377
                                       ..5589999999999999999999999999988876 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.2   0.00013      0.39       3      89 ..      20     107 ..      18     108 .. 0.88
   2 ?    4.0   1.4    0.0042        13     132     184 ..     106     157 ..     101     181 .. 0.80
   3 ?    7.9   6.0   0.00028      0.83     285     381 ..     215     309 ..     196     319 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00013
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP   3 lvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalg 79 
                                       ++l+sl+ ++  ++  +f    +t++  ++ +++++gl+ ++  +g+ ++ l  + +g+r   P +i  g+ ++a +
  gi|300712879|ref|YP_003738691.1|  20 IILVSLIWFMVQFSRYVFPPLFETLQTTYSVSNTQTGLLFTLLMLGYSAAQLPAGILGDRFGEPAIIISGVGIFAAA 96 
                                       67788888888999999*************************************************99999777766 PP

                                       x.xxxxxxxxx RF
                              OATP  80 s.lllalPhfi 89 
                                       s +++  P f+
  gi|300712879|ref|YP_003738691.1|  97 SiVIFFAPSFT 107
                                       51567788886 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0042
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalG 184
                                       ++lf +a +l+GiG+    t++i+++     + ++   lgil ++  +G +++
  gi|300712879|ref|YP_003738691.1| 106 FTLFTAAAVLIGIGTGIHKTVAIPFLSKQYPQ-RTGSALGILDTIGQFGGIVA 157
                                       5699**********************988765.56677999999999998776 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00028
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP 285 kalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklkls 361
                                       + +++++++  + ++++  ++  + ++G++ Flp +  +q + s++ A++   + ++++a l +l+ G l  ++   
  gi|300712879|ref|YP_003738691.1| 215 SLYLSIFSDTKLAVFLVVMTLFTFSWNGIASFLPLFFTNQKGFSPAIASTA--YSLLFVASLSQLITGNLSDRIGRL 289
                                       55667777776777777778888999*******************999987..78899999************9888 PP

                                       xxxxxxxxxxxxxxxxxxxx RF
                              OATP 362 akklaklvlvvsllslllll 381
                                       + +++ + +++  l l+++l
  gi|300712879|ref|YP_003738691.1| 290 PISILLFLVMTVSLILIIIL 309
                                       87777777776666666544 PP

>> Goodbye  fungal STAND N-terminal Goodbye domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.3   0.00057       1.7      62     100 ..      87     125 ..      80     128 .. 0.86
   2 ?   -1.0   0.0      0.79   2.4e+03      57      93 ..     144     180 ..     132     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00057
                           Goodbye  62 iqllggiaaqgasmaFgPaslcfnAvsyLikaakkvsei 100
                                       i+ +g +aa  + + F+P+ + f+A+  Li ++ ++++ 
  gi|300712879|ref|YP_003738691.1|  87 ISGVGIFAAASIVIFFAPSFTLFTAAAVLIGIGTGIHKT 125
                                       666777888888888******************999875 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.79
                           Goodbye  57 kilspiqllggiaaqgasmaFgPaslcfnAvsyLika 93 
                                        il  i ++ggi+a ++ +   ++s   + v+ Li +
  gi|300712879|ref|YP_003738691.1| 144 GILDTIGQFGGIVAPVIVVGLLASSFHWSLVFPLISI 180
                                       5788888999999988877777777766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 2721.55
//
Query:       gi|300712880|ref|YP_003738692.1|  [L=265]
Description: short-chain dehydrogenase/reductase SDR [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-47  160.5   0.1    6.2e-47  160.1   0.1    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
      6e-34  117.2   0.1    7.2e-34  117.0   0.1    1.1  1  adh_short     short chain dehydrogenase
    1.9e-06   27.9   0.1    2.6e-06   27.5   0.1    1.2  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   0.1     1e-50   6.2e-47       4     234 .]      17     261 ..      13     261 .. 0.92

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 1e-50
                                       TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE...E..EE--TTSHHHHHHHHHHHHHHHSSEEEEE CS
                      adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae...v..lecDVtdeeqvealveevvekfgklDilv 74 
                                       +g+G+a Ak+la+eGa+vv++ +++e+  ++ +e+ +e g +   +    cD +d  ++e+++e+++e+fg+lDilv
  gi|300712880|ref|YP_003738692.1|  17 KGLGKASAKRLAKEGANVVISSRKQENvSQTRKEIISEAGVKdsqIyaTICDLNDSVSIESAIEATTEEFGGLDILV 93 
                                       8**************************9999999***9995444545799*************************** PP

                                       E-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHH CS
                      adh_short_C2  75 nnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaale 149
                                       nn g  p+    f+ +++e++d+a    +++ ++la+a lp++++g  gs+++++s +a+   +n+++ ++ + +l 
  gi|300712880|ref|YP_003738692.1|  94 NNHGGPPA--VTFEAATEEQWDDAYVSVIKANIRLAQAGLPYLQQGdgGSLITVTSASAREPGSNHAISNVFRLGLY 168
                                       ********..*******************************9999999***************************** PP

                                       HHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTT........HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSG CS
                      adh_short_C2 150 altrylAvelgpkgiRvNavspgpikTla.asgikg........fdelleelearaplgrlgtpeevaeaalfLasd 217
                                       +lt+++A+e+ p  +R N++ p ++ T+    +i++         +e  e  e++  l+r+g+p+e a+a++fLas+
  gi|300712880|ref|YP_003738692.1| 169 GLTKSIAHEYSP-SVRANCITPRFVMTDRiKYKIERraehrdisIEEATESREQEVLLKRAGRPDEFADAVAFLASP 244
                                       ************.**************88555666544334444456778889999********************* PP

                                       GGTT--SEEEEESTTGG CS
                      adh_short_C2 218 easyitGqtlvvDgGlt 234
                                       +asy+tG+++ vDgG++
  gi|300712880|ref|YP_003738692.1| 245 RASYTTGSVFDVDGGWS 261
                                       ***************85 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.1   1.2e-37   7.2e-34       1     189 [.       8     199 ..       8     205 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.0 bits;  conditional E-value: 1.2e-37
                                       SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEEE-TTTSHHHHHHHHHHHHH CS
                         adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalaiqvDvtdreevealvekavk 73 
                                       k+++v   s+G+G+a ak+lakeGa+vv+ +r++e++ ++ ke+ +e     ++++a  +D++d+ ++e ++e+  +
  gi|300712880|ref|YP_003738692.1|   8 KTAFVSASSKGLGKASAKRLAKEGANVVISSRKQENVSQTRKEIISEagvkDSQIYATICDLNDSVSIESAIEATTE 84 
                                       7899************************************999988887766779999******************* PP

                                       HHSSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHH CS
                         adh_short  74 klgkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYs 150
                                       ++g+ld+LvnN G    ++f+  +ee+w++ +   +++ + l++a lp++ ++ +G+ ++v+S  +++p  + a   
  gi|300712880|ref|YP_003738692.1|  85 EFGGLDILVNNHGGPPAVTFEAATEEQWDDAYVSVIKANIRLAQAGLPYLQQGDGGSLITVTSASAREPGSNHAISN 161
                                       ***************************************************************************** PP

                                       HHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
                         adh_short 151 AsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                                           ++ glt+s+a+e++p+ +r n+++P +v Td  k 
  gi|300712880|ref|YP_003738692.1| 162 VFRLGLYGLTKSIAHEYSPS-VRANCITPRFVMTDRIKY 199
                                       *******************8.*************97665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   4.4e-10   2.6e-06      10     122 ..      17     129 ..       9     162 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.4e-10
                                       SHHHHHHHHHHHHHHS-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EE CS
                                KR  10 GgLGlelarwlaekgarhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGv 85 
                                        gLG++ a+ la++ga+ +v+ sR++ +++++ k+ i+e   ++ ++ +  +D+ d+ ++e+++e+ ++e++ +   
  gi|300712880|ref|YP_003738692.1|  17 KGLGKASAKRLAKEGAN-VVISSRKQeNVSQTRKEIISEAGVKDSQIYATICDLNDSVSIESAIEATTEEFGGLDIL 92 
                                       79*************95.677788743667777788899999999******************************** PP

                                       EE---------TTT--HHHHHHHHTTTTHHHHHHHHH CS
                                KR  86 ihaAgvlrdklleemtaedleqvlapKvkGawnLhel 122
                                       ++  g     ++e  t+e+++ ++ + +k+   L ++
  gi|300712880|ref|YP_003738692.1|  93 VNNHGGPPAVTFEAATEEQWDDAYVSVIKANIRLAQA 129
                                       *********************9999988888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1974.55
//
Query:       gi|300712881|ref|YP_003738693.1|  [L=47]
Description: hypothetical protein HacjB3_17798 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 354.98
//
Query:       gi|300712882|ref|YP_003738694.1|  [L=257]
Description: hypothetical protein HacjB3_17803 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-07   30.0   0.1    7.1e-07   29.0   0.1    1.5  1  TrmB           Sugar-specific transcriptional regulator TrmB
    1.2e-06   28.3   0.2    2.7e-06   27.2   0.2    1.6  1  HTH_11         HTH domain
    3.5e-06   26.7   0.1    7.7e-06   25.6   0.1    1.5  1  HTH_IclR       IclR helix-turn-helix domain
    1.4e-05   25.1   0.0    2.7e-05   24.1   0.0    1.5  1  HTH_20         Helix-turn-helix domain
    1.5e-05   24.8   0.1     0.0016   18.4   0.1    2.3  2  HTH_Crp_2      Crp-like helix-turn-helix domain
    1.7e-05   24.3   0.1    3.5e-05   23.3   0.1    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
     0.0002   21.2   0.3    0.00054   19.8   0.3    1.7  1  MarR_2         MarR family
    0.00028   20.7   0.0      0.001   19.0   0.0    1.9  2  MarR           MarR family
    0.00029   20.6   0.2    0.00064   19.5   0.2    1.6  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
     0.0022   17.7   0.2      0.017   14.8   0.1    2.3  2  HTH_DeoR       DeoR-like helix-turn-helix domain
     0.0023   17.9   0.2     0.0057   16.7   0.2    1.6  1  HTH_7          Helix-turn-helix domain of resolvase
     0.0027   17.8   0.4     0.0072   16.4   0.4    1.7  1  HTH_28         Helix-turn-helix domain
     0.0032   17.2   0.5      0.012   15.5   0.5    1.9  1  HTH_30         PucR C-terminal helix-turn-helix domain
     0.0041   17.2   0.0     0.0081   16.3   0.0    1.4  1  FUR            Ferric uptake regulator family
     0.0088   15.8   0.3      0.018   14.9   0.3    1.5  1  HTH_23         Homeodomain-like domain
     0.0094   15.8   0.0      0.025   14.4   0.0    1.7  1  HTH_5          Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.018   15.4   0.0       0.11   12.8   0.0    2.0  2  Rrf2           Transcriptional regulator
      0.059   13.5   0.1       0.13   12.4   0.1    1.6  1  HTH_22         HTH domain
       0.06   13.9   0.0        0.2   12.2   0.0    1.8  2  Mga            Mga helix-turn-helix domain
      0.076   13.0   0.0       0.15   12.0   0.0    1.5  1  HTH_36         Helix-turn-helix domain
       0.11   12.3   0.0        1.2    9.0   0.1    2.3  2  HTH_10         HTH DNA binding domain


Domain annotation for each model (and alignments):
>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   8.3e-10   7.1e-07      22      61 ..      43      82 ..      36      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 8.3e-10
                                      CCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTTE CS
                              TrmB 22 patadeiaeelgvprskvYevLrsLedkGlVerekgrpkl 61
                                      + ta+e+ae++ ++r++vY+ L +L + G+V ++k+r++l
  gi|300712882|ref|YP_003738694.1| 43 RRTATELAERSSISRATVYRRLDNLQRVGVVGKSKSRYRL 82
                                      689********************************99875 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.2   3.2e-09   2.7e-06       4      44 ..      35      72 ..      33      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.2e-09
                            HTH_11  4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                                      qil  L ++r   ++ eLAe+ ++Sr+tv+r+++ L+  gv
  gi|300712882|ref|YP_003738694.1| 35 QILYYL-DQR--RTATELAERSSISRATVYRRLDNLQRVGV 72
                                      666666.555..6************************9994 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1     9e-09   7.7e-06       5      48 ..      33      73 ..      33      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 9e-09
                                      HHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                          HTH_IclR  5 alaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                                      +l+iL +l +++ +   +elA+r+ ++++tv+R L  L++ G v
  gi|300712882|ref|YP_003738694.1| 33 GLQILYYLDQRRTA---TELAERSSISRATVYRRLDNLQRVGVV 73
                                      68999999988886...************************988 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   3.2e-08   2.7e-05      14      54 ..      35      73 ..      32      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 3.2e-08
                                      HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTE CS
                            HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLv 54
                                       il +L  ++ +ta+elaer ++s++t++++L+ L+++g v
  gi|300712882|ref|YP_003738694.1| 35 QILYYL--DQRRTATELAERSSISRATVYRRLDNLQRVGVV 73
                                      567777..99*****************************98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.9e-06    0.0016      23      62 ..      45      85 ..      27      86 .. 0.86
   2 ?    4.2   0.0     0.049        42      16      47 ..     213     245 ..     188     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
                                      HHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE.TEEEEES-H CS
                         HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglisr.grririldl 62
                                      t +elA++  ++r tv r l  L+r g++ + + r r++d+
  gi|300712882|ref|YP_003738694.1| 45 TATELAERSSISRATVYRRLDNLQRVGVVGKsKSRYRLNDP 85
                                      779***************************52334999996 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.049
                                       C.EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHH CS
                         HTH_Crp_2  16 g.eielpltqeelAsmlGltretvsrilseLkr 47 
                                       +  i+l+   ++l+++l +  et++  l ++++
  gi|300712882|ref|YP_003738694.1| 213 EtAIDLRAIVDDLSEYLETDGETTTEQLPQWEE 245
                                       24688899999****************999986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   4.1e-08   3.5e-05      15      47 ..      41      73 ..      34      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.1e-08
                            HTH_24 15 nprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                                      + r + +eLAer+ +S++tv rrl++L++ G++
  gi|300712882|ref|YP_003738694.1| 41 DQRRTATELAERSSISRATVYRRLDNLQRVGVV 73
                                      6699***********************998886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.3   6.3e-07   0.00054       9      56 ..      35      78 ..      31      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 6.3e-07
                                      HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
                            MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                                      ++L++L  r     t++ela+r  +s+++v r+l+ L++ G v ++++
  gi|300712882|ref|YP_003738694.1| 35 QILYYLDQRR----TATELAERSSISRATVYRRLDNLQRVGVVGKSKS 78
                                      6777777774....*************************999987765 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-06     0.001       9      52 ..      34      78 ..      31      79 .. 0.88
   2 ?   -2.6   0.0       6.2   5.3e+03      20      38 ..     222     240 ..     219     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-06
                                      HHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
                              MarR  9 Lrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRsks 52
                                      L ily+ ++  + +eLa+++++s++tv r ld L + G + +sks
  gi|300712882|ref|YP_003738694.1| 34 LQILYYLDQrRTATELAERSSISRATVYRRLDNLQRVGVVGKSKS 78
                                      78888888866778**********************999988876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.2
                                       HHHHHHHHTS-HHHHHHHH CS
                              MarR  20 vseLakklgvskstvtrvl 38 
                                       v +L + l+++  t+t++l
  gi|300712882|ref|YP_003738694.1| 222 VDDLSEYLETDGETTTEQL 240
                                       5689999999999999876 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   7.5e-07   0.00064      15      42 .]      41      68 ..      35      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 7.5e-07
                     HTH_AsnC-type 15 daRisyaeLAervGlSestvlrRvrrLe 42
                                      d R++ +eLAer  +S++tv rR++ L+
  gi|300712882|ref|YP_003738694.1| 41 DQRRTATELAERSSISRATVYRRLDNLQ 68
                                      89**********************9885 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     2e-05     0.017       4      55 ..      35      84 ..      34      86 .. 0.90
   2 ?    0.0   0.0      0.86   7.3e+02       5      20 ..     225     240 ..     222     250 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-05
                          HTH_DeoR  4 qilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsis 55
                                      qil +l q+++   +el+e+  +S aT+ R L++L+  g++ +   ++++++
  gi|300712882|ref|YP_003738694.1| 35 QILYYLDQRRTA--TELAERSSISRATVYRRLDNLQRVGVVGKSKSRYRLND 84
                                      899999999987..5*************************999888887776 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.86
                          HTH_DeoR   5 ilellkqqgklsveel 20 
                                       + e+l+ +g  ++e+l
  gi|300712882|ref|YP_003738694.1| 225 LSEYLETDGETTTEQL 240
                                       6799999999999998 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   6.6e-06    0.0057      22      41 ..      44      63 ..      35      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.6e-06
                                      --STTTSSSS---SSSS--S CS
                             HTH_7 22 isiskIAkevnisRsTvYRy 41
                                       +++++A+++ isR+TvYR 
  gi|300712882|ref|YP_003738694.1| 44 RTATELAERSSISRATVYRR 63
                                      57899**************5 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   8.4e-06    0.0072       6      37 ..      36      68 ..      36      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.4e-06
                            HTH_28  6 ikllaaGh.svreaArelgisrrtvyrWikrye 37
                                      i+++++++ +++e+A++  isr tvyr +  ++
  gi|300712882|ref|YP_003738694.1| 36 ILYYLDQRrTATELAERSSISRATVYRRLDNLQ 68
                                      789**9999******************998766 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.5   1.3e-05     0.012       7      38 ..      38      69 ..      36      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
                                      HHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHH CS
                            HTH_30  7 aylenggnisatAkaLhvHrnTlryRLrriee 38
                                       yl++ + +++ A++  ++r T++ RL+ +++
  gi|300712882|ref|YP_003738694.1| 38 YYLDQRRTATELAERSSISRATVYRRLDNLQR 69
                                      59*************************98875 PP

>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   9.5e-06    0.0081      35      62 ..      50      77 ..      36      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.5e-06
                                      HTTTT--HHHHHHHHHHHHHTTSEEEEE CS
                               FUR 35 eedpeislaTVYrtLklleeaglvkele 62
                                       e+++is aTVYr L+ l+++g+v + +
  gi|300712882|ref|YP_003738694.1| 50 AERSSISRATVYRRLDNLQRVGVVGKSK 77
                                      56789******************98755 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   2.1e-05     0.018       8      40 ..      34      66 ..      34      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-05
                            HTH_23  8 lrillllaeGlsvreIAreLgvsrrTvyrwlkr 40
                                      l+il+ l+++ + +e A++  +sr Tvyr l  
  gi|300712882|ref|YP_003738694.1| 34 LQILYYLDQRRTATELAERSSISRATVYRRLDN 66
                                      699*************************98765 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.9e-05     0.025       5      45 ..      34      73 ..      34      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-05
                                      HHHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                             HTH_5  5 lkILklLaegelcvcelaeelglsqstvShHLkkLreaGLV 45
                                      l+IL++L ++ ++++elae   +s++tv + L  L   G+V
  gi|300712882|ref|YP_003738694.1| 34 LQILYYL-DQRRTATELAERSSISRATVYRRLDNLQRVGVV 73
                                      7899999.5679*************************9998 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013      0.11      11      57 ..      34      75 ..      30      86 .. 0.83
   2 ?   -0.3   0.0       1.6   1.4e+03       5      34 ..     181     209 ..     178     225 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                                      HHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                              Rrf2 11 lhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvks 57
                                      l++l+yL ++++     ++e+aer +is+  + + l +L++ g+v  
  gi|300712882|ref|YP_003738694.1| 34 LQILYYLDQRRT-----ATELAERSSISRATVYRRLDNLQRVGVVGK 75
                                      667777766655.....67************************9965 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.6
                                       HHHHHHHHHHHHHHHSSTCC-B-HHHHHHH CS
                              Rrf2   5 skteyalhallyLakeeeeepvsseeiaer 34 
                                         ++y + +ll ++k+e ++ +++++ ae+
  gi|300712882|ref|YP_003738694.1| 181 DGSRYRTYCLLLIQKQEVDQ-AALQDCAEH 209
                                       56789999999999999998.888877775 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00015      0.13      41      62 ..      43      64 ..      39      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                            HTH_22 41 kgavekvAekLgiSraTvYryL 62
                                      ++++ ++Ae+ +iSraTvYr L
  gi|300712882|ref|YP_003738694.1| 43 RRTATELAERSSISRATVYRRL 64
                                      7888999*************98 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00024       0.2      27      55 ..      40      68 ..      32      70 .. 0.85
   2 ?   -2.0   0.0       6.6   5.6e+03      37      58 ..     206     229 ..     189     235 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00024
                                      HHSEEEHHHHHHHCT--HHHHHHHHHHHH CS
                               Mga 27 eeeevsieelaqelyiSestlkrkikeln 55
                                       +++ + +ela++  iS++t++r +++l+
  gi|300712882|ref|YP_003738694.1| 40 LDQRRTATELAERSSISRATVYRRLDNLQ 68
                                      4788999******************9987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.6
                                       HHHCT--HHH..HHHHHHHHHHHC CS
                               Mga  37 aqelyiSest..lkrkikelnklL 58 
                                       ++e+y+ e+   l  ++++l ++L
  gi|300712882|ref|YP_003738694.1| 206 CAEHYLPETAidLRAIVDDLSEYL 229
                                       678888887622344555555555 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.15      30      53 ..      48      71 ..      39      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
                            HTH_36 30 tlakrlglsknTvsraikeLeqlG 53
                                       la+r+ +s+ Tv+r +++L + G
  gi|300712882|ref|YP_003738694.1| 48 ELAERSSISRATVYRRLDNLQRVG 71
                                      79******************9877 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0014       1.2      22      48 ..      42      68 ..      38      70 .. 0.85
   2 ?    0.3   0.0      0.74   6.3e+02      11      44 ..      90     123 ..      87     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0014
                            HTH_10 22 RrvtlkeLAkelGIskstlsehLrkae 48
                                       r t+ eLA++  Is++t++ +L + +
  gi|300712882|ref|YP_003738694.1| 42 QRRTATELAERSSISRATVYRRLDNLQ 68
                                      577999***************998765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.74
                            HTH_10  11 lAyemGYFdyPRrvtlkeLAkelGIskstlsehL 44 
                                       + ++ G F + +r ++++ A  l+    t  e+L
  gi|300712882|ref|YP_003738694.1|  90 VSIARGLFHQKHRREAEQHATGLNFVWETHDEYL 123
                                       56889********999998888877777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1717.09
//
Query:       gi|300712883|ref|YP_003738695.1|  [L=60]
Description: DNA-directed RNA polymerase subunit E'' [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-08   32.7   0.8    7.3e-08   32.4   0.8    1.1  1  Spt4            Spt4/RpoE2 zinc finger
     0.0022   18.4   2.6      0.003   18.0   2.6    1.3  1  Cytochrom_c3_2  Cytochrome c3
     0.0051   16.6   1.3     0.0086   15.9   1.3    1.4  1  Prok-RING_4     Prokaryotic RING finger family 4
     0.0093   15.7   1.8     0.0093   15.7   1.8    1.1  1  TackOD1         Thaumarchaeal output domain 1
  ------ inclusion threshold ------
      0.013   15.2   0.7      0.021   14.5   0.7    1.3  1  zinc_ribbon_2   zinc-ribbon domain
      0.015   15.0   3.6       0.45   10.2   0.1    2.2  2  zf-RRN7         Zinc-finger of RNA-polymerase I-specific TFII
      0.026   13.9   1.3      0.026   13.9   1.3    1.9  2  zf-ribbon_3     zinc-ribbon domain
      0.028   14.4   1.6      0.036   14.1   1.6    1.3  1  DZR             Double zinc ribbon
      0.048   13.7   0.8      0.057   13.4   0.8    1.1  1  HypA            Hydrogenase/urease nickel incorporation, meta
       0.09   12.3   1.0       0.64    9.6   0.1    2.1  2  TF_Zn_Ribbon    TFIIB zinc-binding
       0.21   11.7   4.3       0.78    9.9   4.3    1.8  1  Zn-ribbon_8     Zinc ribbon domain


Domain annotation for each model (and alignments):
>> Spt4  Spt4/RpoE2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.8   4.4e-11   7.3e-08       2      61 ..       5      50 ..       4      58 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 4.4e-11
                              Spt4  2 rACllCklvktedqFeeegCpnCeilelkgdkekvsectseefeGlvaildpekSwvAkw 61
                                       AC++C+ +++ +    + Cp+C           +s+++s+++ G v++++p++S vA  
  gi|300712883|ref|YP_003738695.1|  5 LACRECHSLHEASV---QACPVC-----------GSSSLSDDWAGCVIVAHPNQSDVAGA 50
                                      59**********99...******...........************************87 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.6   1.9e-06     0.003      57      78 ..       3      24 ..       1      26 [. 0.90

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.9e-06
                                      SSS-GGGTS-TTTSBT-GGGGT CS
                    Cytochrom_c3_2 57 keleCteCHkeHkksekvCaeC 78
                                      ++l+C eCH+ H++s++ C  C
  gi|300712883|ref|YP_003738695.1|  3 DRLACRECHSLHEASVQACPVC 24
                                      6789***************999 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.3   5.3e-06    0.0086      19      38 ..       5      26 ..       3      33 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.3e-06
                       Prok-RING_4 19 lvCkeCfdskdls..sCPlCqr 38
                                      l C+eC +  + s  +CP+C +
  gi|300712883|ref|YP_003738695.1|  5 LACRECHSLHEASvqACPVCGS 26
                                      67******9988888*****86 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.8   5.7e-06    0.0093      74      99 ..       5      30 ..       1      43 [. 0.89

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.7e-06
                           TackOD1 74 rlCpsCksghlnvrevCpkCkSidie 99
                                       +C++C+s h    ++Cp C+S+ ++
  gi|300712883|ref|YP_003738695.1|  5 LACRECHSLHEASVQACPVCGSSSLS 30
                                      58********************9886 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.7   1.3e-05     0.021       2      21 ..       7      26 ..       6      28 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
                     zinc_ribbon_2  2 CpnCGaelqdnakFCpyCGt 21
                                      C +C+  ++  ++ Cp CG+
  gi|300712883|ref|YP_003738695.1|  7 CRECHSLHEASVQACPVCGS 26
                                      9******************7 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.8    0.0084        14      24      32 .]       7      15 ..       6      15 .. 0.88
   2 ?   10.2   0.1   0.00028      0.45       5      15 ..      19      33 ..      16      34 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0084
                           zf-RRN7 24 CrrChtqeg 32
                                      Cr+Ch+ ++
  gi|300712883|ref|YP_003738695.1|  7 CRECHSLHE 15
                                      *****9775 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00028
                           zf-RRN7  5 ppCgvCgc....rsf 15
                                       +C+vCg+    +++
  gi|300712883|ref|YP_003738695.1| 19 QACPVCGSsslsDDW 33
                                      68******6666666 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.72   1.2e+03      18      22 ..       6      10 ..       2      12 .. 0.79
   2 ?   13.9   1.3   1.6e-05     0.026       3      19 ..      19      36 ..      17      36 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.72
                       zf-ribbon_3 18 vCpyC 22
                                      +C  C
  gi|300712883|ref|YP_003738695.1|  6 ACREC 10
                                      79988 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.6e-05
                       zf-ribbon_3  3 vrCPnCGa.plssddnvC 19
                                      + CP CG+  ls+d+  C
  gi|300712883|ref|YP_003738695.1| 19 QACPVCGSsSLSDDWAGC 36
                                      67******99****9755 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.6   2.2e-05     0.036       1      37 [.       7      27 ..       2      44 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
                               DZR  1 CpqCgeelppdarfCseCgtklkavaaedrCpsCgek 37
                                      C +C++ ++++ + C+ Cg                ++
  gi|300712883|ref|YP_003738695.1|  7 CRECHSLHEASVQACPVCG----------------SS 27
                                      4444444444444444444................44 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.8   3.5e-05     0.057      70      97 ..       4      29 ..       1      34 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.5e-05
                                      EEEETTTS-EEECHHHHHS-TTTSSS-E CS
                              HypA 70 kvrCreCgkefeleekalrCpkCgsadv 97
                                      ++ CreC++  e + +   Cp Cgs+++
  gi|300712883|ref|YP_003738695.1|  4 RLACRECHSLHEASVQ--ACPVCGSSSL 29
                                      679*****77776644..8*****9875 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.12     2e+02       2       8 ..       6      12 ..       5      15 .. 0.83
   2 ?    9.6   0.1   0.00039      0.64       2      11 ..      20      29 ..      19      39 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
                                      EETTTTC CS
                      TF_Zn_Ribbon  2 kCPnCgs 8 
                                       C +C+s
  gi|300712883|ref|YP_003738695.1|  6 ACRECHS 12
                                      599**98 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00039
                                      EETTTTCEEC CS
                      TF_Zn_Ribbon  2 kCPnCgstnl 11
                                       CP+Cgs++l
  gi|300712883|ref|YP_003738695.1| 20 ACPVCGSSSL 29
                                      5******985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.3   0.00048      0.78       8      35 ..       7      28 ..       4      31 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00048
                       Zn-ribbon_8  8 CeeCghefevlqsisdapltaCPeCgs.e 35
                                      C+eC++ +e       a+ +aCP Cgs  
  gi|300712883|ref|YP_003738695.1|  7 CRECHSLHE-------ASVQACPVCGSsS 28
                                      777875555.......33567*****955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 428.65
//
Query:       gi|300712884|ref|YP_003738696.1|  [L=340]
Description: Transcription factor TFIIB cyclin-related protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-31  105.8   0.0    5.3e-15   55.2   0.0    2.3  2  TFIIB           Transcription factor TFIIB repeat
    1.9e-17   62.4   2.1      4e-17   61.5   2.1    1.6  1  TF_Zn_Ribbon    TFIIB zinc-binding
     0.0015   18.0   0.2      0.032   13.8   0.0    2.9  2  Sigma70_r4      Sigma-70, region 4
      0.002   18.1   0.5     0.0035   17.4   0.5    1.3  1  DZR             Double zinc ribbon
     0.0029   17.3   2.0     0.0051   16.5   2.0    1.4  1  zf-RRN7         Zinc-finger of RNA-polymerase I-specific TFII
     0.0029   17.7   0.0      0.025   14.6   0.0    2.1  2  Cyclin_C        Cyclin, C-terminal domain
     0.0031   16.9   0.5       0.63    9.5   0.1    2.3  2  zf-ribbon_3     zinc-ribbon domain
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.032   13.9   0.0    1.8  1  Sigma70_r4_2    Sigma-70, region 4
      0.019   15.1   1.2      0.035   14.3   1.2    1.4  1  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 
      0.029   14.3   0.2      0.066   13.2   0.2    1.5  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
      0.038   13.9   1.0      0.076   13.0   1.0    1.5  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
      0.088   12.9   1.5       0.36   11.0   0.2    2.3  2  MerR_1          MerR HTH family regulatory protein
       0.09   12.4   0.0       0.19   11.3   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
       0.11   12.6   0.0       0.36   10.9   0.0    1.9  2  HTH_3           Helix-turn-helix
       0.12   12.2   0.0       0.35   10.7   0.0    1.8  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
        0.2   12.1   3.3        3.2    8.2   0.2    3.1  3  zf-IS66         zinc-finger binding domain of transposase IS6
       0.22   11.3   0.9          1    9.1   0.9    2.0  1  A2L_zn_ribbon   A2L zinc ribbon domain
       0.65   10.2   5.2       0.92    9.7   0.5    2.4  2  Zn-ribbon_8     Zinc ribbon domain
        1.4    9.2   3.6        1.1    9.5   0.3    2.2  2  zinc_ribbon_9   zinc-ribbon


Domain annotation for each model (and alignments):
>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   5.6e-18   5.3e-15       1      70 [.     147     216 ..     147     217 .. 0.97
   2 !   48.6   0.0   6.8e-16   6.4e-13       2      71 .]     242     311 ..     241     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 5.6e-18
                                       HHHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHH CS
                             TFIIB   1 ikrfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekt 70 
                                       i+r+ +al+ pe V++ A  ++++al+e++l Grs +g+  A+ly A r+ ++ r+ +e+ +v++V e +
  gi|300712884|ref|YP_003738696.1| 147 IERMGSALGVPEDVRETASVIYRRALSEDLLPGRSIEGVTTAALYAAIRQMGLPRSVEEVGAVSRVDEME 216
                                       899***************************************************************9977 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 6.8e-16
                                       HHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
                             TFIIB   2 krfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71 
                                       +rfa+ l+  ++ + +A el+++++ee+ ++G+sp g+a+A+ly A  + +   tq e+s+v+ Vs++ti
  gi|300712884|ref|YP_003738696.1| 242 PRFASDLNVNDETEGRARELIQTVMEEGAHSGKSPVGLAGAALYAAGILTNDGLTQDEVSEVVGVSTVTI 311
                                       79******************************************************************98 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   2.1   4.2e-20     4e-17       2      43 .]      32      72 ..      31      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 4.2e-20
                                      EETTTTCEECHEETSTTCEEESSSSBEEEECCCCCCCHHHHH CS
                      TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdCGlVlednsidegpewref 43
                                      +CP+Cg++ lv+D+e+ge++C +CGlV+ ++ id+gpewr+f
  gi|300712884|ref|YP_003738696.1| 32 VCPECGGR-LVNDAEHGETTCAECGLVVKEDEIDHGPEWRAF 72
                                      8******9.8******************************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.43     4e+02      34      45 ..     161     172 ..     146     174 .. 0.79
   2 !   13.8   0.0   3.3e-05     0.032      19      45 ..     293     319 ..     284     321 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.43
                                       HHHHHHHHHHHH CS
                        Sigma70_r4  34 rerVrqiekrAl 45 
                                       re+++ i +rAl
  gi|300712884|ref|YP_003738696.1| 161 RETASVIYRRAL 172
                                       79*********9 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.3e-05
                                       TT--HHHHHHHHTS-HHHHHHHHHHHH CS
                        Sigma70_r4  19 eglTleEIgerlgiSrerVrqiekrAl 45 
                                       +glT+ E++e+ g+S  ++r +  + l
  gi|300712884|ref|YP_003738696.1| 293 DGLTQDEVSEVVGVSTVTIRNRYQELL 319
                                       79*******************988766 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.5   3.7e-06    0.0035       8      41 ..      26      61 ..      22      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.7e-06
                               DZR  8 lppdarfCseCgtklkavaa..edrCpsCgekvdpe 41
                                      +++  r+C+eCg +l + a+  e++C +Cg  v+++
  gi|300712884|ref|YP_003738696.1| 26 TDETERVCPECGGRLVNDAEhgETTCAECGLVVKED 61
                                      577899********87655579*******9888765 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   2.0   5.4e-06    0.0051       2      30 ..      28      57 ..      27      58 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.4e-06
                           zf-RRN7  2 ekgppCgvCgcrsftl.ddGfyyCrrChtq 30
                                      e++ +C++Cg+r++   + G + C +C+ +
  gi|300712884|ref|YP_003738696.1| 28 ETERVCPECGGRLVNDaEHGETTCAECGLV 57
                                      56789**********************965 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.71   6.7e+02      49      88 ..     187     226 ..     184     232 .. 0.88
   2 !   14.6   0.0   2.7e-05     0.025       2     105 ..     236     333 ..     235     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.71
                                       HHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHHHHHHH CS
                          Cyclin_C  49 aaalllarstlnspewtetlehytgyskedlkpcvelile 88 
                                       +aal++a+++++ p   e++  ++++++ ++k  ++ i++
  gi|300712884|ref|YP_003738696.1| 187 TAALYAAIRQMGLPRSVEEVGAVSRVDEMEFKRAYRYINQ 226
                                       799*****9999999999999*****99999999988876 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.7e-05
                                       -HHHHHHHH.HCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC---HH CS
                          Cyclin_C   2 tplsFlrrf.lkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehytgyske 77 
                                        p ++l rf ++   + +d e++ +a+ l+ +++ +    + +p  +A aal++a    n++  ++++ ++ g+s  
  gi|300712884|ref|YP_003738696.1| 236 APDQYLPRFaSDL--NVND-ETEGRARELIQTVMEEGAHSGKSPVGLAGAALYAAGILTNDGLTQDEVSEVVGVSTV 309
                                       5778999997888..4458.9******************************************************** PP

                                       HHHHHHHHHHHHHHHHHGSS--HHCCCC CS
                          Cyclin_C  78 dlkpcvelilellssapssklqavrrky 105
                                        +++ ++ +le+  +    ++qa +r y
  gi|300712884|ref|YP_003738696.1| 310 TIRNRYQELLEVEGK----RQQAEQREY 333
                                       ************944....444444444 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00066      0.63      13      26 .]      27      40 ..      25      40 .. 0.85
   2 ?    5.3   0.1     0.015        14      15      25 ..      47      57 ..      44      58 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00066
                       zf-ribbon_3 13 ssddnvCpyCGtkl 26
                                      ++  +vCp CG++l
  gi|300712884|ref|YP_003738696.1| 27 DETERVCPECGGRL 40
                                      677899*****987 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.015
                       zf-ribbon_3 15 ddnvCpyCGtk 25
                                      + ++C+ CG +
  gi|300712884|ref|YP_003738696.1| 47 GETTCAECGLV 57
                                      789******85 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.4e-05     0.032      25      48 ..     293     316 ..     291     320 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.4e-05
                                       S---HHHHHHHHT--HHHHHHHHH CS
                      Sigma70_r4_2  25 eglsykEIAellgisegtVksrls 48 
                                       +gl+++E++e+ g+s +t+++r++
  gi|300712884|ref|YP_003738696.1| 293 DGLTQDEVSEVVGVSTVTIRNRYQ 316
                                       79********************98 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.2   3.7e-05     0.035      16      40 .]      31      55 ..      29      55 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-05
                     Auto_anti-p27 16 etCpvCgvPLmrdrkggkvyCvaCd 40
                                       +Cp+Cg  L+ d + g++ C+ C+
  gi|300712884|ref|YP_003738696.1| 31 RVCPECGGRLVNDAEHGETTCAECG 55
                                      68************889*******6 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2     7e-05     0.066      18      44 ..      30      55 ..      23      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7e-05
                     Zn_Tnp_IS1595 18 gfvCPhCgsrkayriktrglfqCkeCr 44
                                       +vCP Cg+r +   ++ g   C+eC+
  gi|300712884|ref|YP_003738696.1| 30 ERVCPECGGRLVNDAEH-GETTCAECG 55
                                      589**************.********7 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0     8e-05     0.076      27      58 ..      29      60 ..      20      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8e-05
                    OrfB_Zn_ribbon 27 TSktCseCgsknkealsgrtfkCpnCgfeadr 58
                                      T   C+eCg ++ ++ ++ + +C +Cg++   
  gi|300712884|ref|YP_003738696.1| 29 TERVCPECGGRLVNDAEHGETTCAECGLVVKE 60
                                      5578***********************98765 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.72   6.7e+02      15      30 ..     121     136 ..     113     144 .. 0.78
   2 ?   11.0   0.2   0.00038      0.36       4      42 ..     298     337 ..     295     340 .] 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.72
                                       HHHHHHHHHTT-S-EE CS
                            MerR_1  15 htlrywekegllkpkr 30 
                                       + lr w++++  + ++
  gi|300712884|ref|YP_003738696.1| 121 SRLRTWDERFRTRNSK 136
                                       579******9855555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00038
                                       HHHHHHHTS-HHHHHHHHHHTT.-S-EE-TTS-EEEEHHH CS
                            MerR_1   4 gevakilgvtthtlrywekegl.lkpkrteggrryYtded 42 
                                       +ev++ +gv+t t+r   +e l +  kr +  +r Yt+++
  gi|300712884|ref|YP_003738696.1| 298 DEVSEVVGVSTVTIRNRYQELLeVEGKRQQAEQREYTETE 337
                                       79*************88888887**************976 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.19      15      43 ..     292     320 ..     289     320 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
                            HTH_24  15 nprisqreLAerlglSpstvnrrlkrLee 43 
                                       n +++q e++e +g+S  t++ r ++L e
  gi|300712884|ref|YP_003738696.1| 292 NDGLTQDEVSEVVGVSTVTIRNRYQELLE 320
                                       99********************9999975 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.9   6.5e+03      27      49 ..     145     155 ..     137     159 .. 0.53
   2 ?   10.9   0.0   0.00038      0.36       9      27 ..     294     312 ..     289     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.9
                                       HHHHTTSSCSBHHHHHHHHHHHT CS
                             HTH_3  27 sriEnGernPsletlkklakaLg 49 
                                       + iE            ++  aLg
  gi|300712884|ref|YP_003738696.1| 145 AEIE------------RMGSALG 155
                                       4444............3344455 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00038
                                       THHHHHHHHHHTSSHHHHH CS
                             HTH_3   9 glsqeeLAeklGvsrstis 27 
                                       gl+q e++e++Gvs  ti+
  gi|300712884|ref|YP_003738696.1| 294 GLTQDEVSEVVGVSTVTIR 312
                                       9****************97 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00037      0.35      21      41 ..     298     318 ..     292     319 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
                     HTH_AsnC-type  21 aeLAervGlSestvlrRvrrL 41 
                                        e++e vG+S+ t+++R++ L
  gi|300712884|ref|YP_003738696.1| 298 DEVSEVVGVSTVTIRNRYQEL 318
                                       699***************998 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0034       3.2       1      10 [.      30      40 ..      30      46 .. 0.80
   2 ?    3.1   0.2      0.14   1.3e+02       1      14 [.      48      58 ..      48      64 .. 0.70
   3 ?   -2.6   0.0       8.4     8e+03      13      25 ..     155     166 ..     151     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0034
                           zf-IS66  1 prtCpcCGg.l 10
                                      +r+Cp+CGg l
  gi|300712884|ref|YP_003738696.1| 30 ERVCPECGGrL 40
                                      799******44 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
                           zf-IS66  1 prtCpcCGgllkpi 14
                                      ++tC++CG l   +
  gi|300712884|ref|YP_003738696.1| 48 ETTCAECG-L--VV 58
                                      689*****.3..34 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 8.4
                           zf-IS66  13 pigedrvreeldi 25 
                                        ++ed vre+  +
  gi|300712884|ref|YP_003738696.1| 155 GVPED-VRETASV 166
                                       57899.9998766 PP

>> A2L_zn_ribbon  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.9    0.0011         1       3      30 ..      30      57 ..      28      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0011
                     A2L_zn_ribbon  3 lkvCsvCggngilnseqgylvCieCgas 30
                                      ++vC  Cgg  +  +e+g+  C eCg++
  gi|300712884|ref|YP_003738696.1| 30 ERVCPECGGRLVNDAEHGETTCAECGLV 57
                                      689999***98888***********986 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   0.00097      0.92      21      36 ..      25      40 ..      14      43 .. 0.75
   2 ?    2.8   0.3      0.13   1.3e+02      23      34 ..      45      56 ..      39      60 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00097
                       Zn-ribbon_8 21 isdapltaCPeCgsev 36
                                       +d+ + +CPeCg+++
  gi|300712884|ref|YP_003738696.1| 25 TTDETERVCPECGGRL 40
                                      45778888*****965 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.13
                       Zn-ribbon_8 23 dapltaCPeCgs 34
                                      +  +t+C eCg 
  gi|300712884|ref|YP_003738696.1| 45 EHGETTCAECGL 56
                                      566899****85 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3    0.0012       1.1      17      32 ..      27      41 ..      20      44 .. 0.65
   2 ?    0.2   0.2         1   9.7e+02      18      28 ..      45      55 ..      40      56 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
                     zinc_ribbon_9 17 dedsdvlCPhCgggFV 32
                                      de++  +CP+Cgg  V
  gi|300712884|ref|YP_003738696.1| 27 DETER-VCPECGGRLV 41
                                      22333.5*****9876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1
                     zinc_ribbon_9 18 edsdvlCPhCg 28
                                      e+ +++C +Cg
  gi|300712884|ref|YP_003738696.1| 45 EHGETTCAECG 55
                                      455678****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2475.94
//
Query:       gi|300712885|ref|YP_003738697.1|  [L=150]
Description: Ferritin Dps family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-22   77.5   0.5    1.1e-21   77.2   0.5    1.0  1  Ferritin      Ferritin-like domain
    5.8e-09   36.5   1.7    6.7e-09   36.3   1.7    1.0  1  Rubrerythrin  Rubrerythrin
    0.00073   19.7   0.1    0.00098   19.3   0.1    1.1  1  Ferritin_2    Ferritin-like domain
  ------ inclusion threshold ------
      0.042   14.0   0.9       0.12   12.6   0.9    1.8  1  Caudo_TAP     Caudovirales tail fibre assembly protein, lambd
      0.081   12.9   1.3       0.21   11.6   1.3    1.8  1  DUF892        Domain of unknown function (DUF892)


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.5   3.1e-25   1.1e-21       1     134 [.       7     144 ..       7     148 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 3.1e-25
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH.HHHHHHHHHHHHHHHTTS....SHH...HHHHC- CS
                          Ferritin   1 ikaLneqladeltaayqylamawyvkgpgleglaeffdeqae.eerehadklaerilalGgtpvltra...eleeie 73 
                                       i++L+++ +de++  + yl  a +++g+  e+++e ++  a+ ee+ ha+++ +r+++l+++p+++     e e+++
  gi|300712885|ref|YP_003738697.1|   7 IELLRSAYNDEIETVMNYLTNATVLDGVSAEEVKESLRADAKqEELIHAERIGKRLKELDAQPPASFEfepEQEALQ 83 
                                       689***********************************999725569******************998654555576 PP

                                       SSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHH CS
                          Ferritin  74 apkefgsveevleaalehekkvteslrelielaeeegDpatadfledfleeqeehewelea 134
                                       +p++ ++v++v+  ++e e+++++++r l+e a+e+ Dp+t+d++ d+l ++e h  e+++
  gi|300712885|ref|YP_003738697.1|  84 PPEDTADVLSVIDGVIEYEEDAIDTYRSLMEAAREADDPVTEDLAIDILSDEESHRSEFRS 144
                                       666667***************************************************9987 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   1.7   1.9e-12   6.7e-09       1     135 [.       8     144 ..       8     146 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.9e-12
                                       HHHHHHHHHHHHHHHHHHHHHHCHH.TT-HHHHHHHHHHHHHHH.HHHHHHHHHHHHCSTTHH..B.SSBBS----- CS
                      Rubrerythrin   1 eiLekAiagEssarrlYkelaekak.egypqiaelFeelAeeEr.eHakilnklleklepele.levkekvreyaea 74 
                                       e+L  A+  E++  + Y   a  ++  + ++++e +++ A++E+  Ha+++ k l++l+ +    +  e   e++++
  gi|300712885|ref|YP_003738697.1|   8 ELLRSAYNDEIETVMNYLTNATVLDgVSAEEVKESLRADAKQEElIHAERIGKRLKELDAQPPaSFEFEPEQEALQP 84 
                                       79************************************99876439****************967677777777777 PP

                                       --TTGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH CS
                      Rubrerythrin  75 kpkflttaknLeeaiegayaeeeemyrfyeelaekegneeakklfkklaeaEkkHeerlrk 135
                                       +++       ++ +ie ++++ ++ yr++ e+a+++ ++ +++l  ++  +E++H   +r 
  gi|300712885|ref|YP_003738697.1|  85 PEDTADVLSVIDGVIEYEEDA-IDTYRSLMEAAREADDPVTEDLAIDILSDEESHRSEFRS 144
                                       777766666666666666554.56789999**************************99986 PP

>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.7e-07   0.00098       3     133 ..       7     145 ..       5     147 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.7e-07
                        Ferritin_2   3 vdiLnfAlnlEyleaafYtaalegaslddkalldaevreva.eeiakheeaHveflkaaleGaaavakptfdf.... 74 
                                       +++L  A+n E      Y   ++      ++ + +ev+e +  +++++e  H+e + + l+   a ++  f+f    
  gi|300712885|ref|YP_003738697.1|   7 IELLRSAYNDEIETVMNYLTNATVL----DGVSAEEVKESLrADAKQEELIHAERIGKRLKELDAQPPASFEFepeq 79 
                                       6677777777777777777777744....5666666655551567778889*********94445456667778899 PP

                        Ferritin_2  75 ....afdpfadeksflalaavlEdvgvsAY...lgaapllsnkelltaaasIlsvEArHaavirtl 133
                                           + +++ad  s++++    E+ +++ Y   + aa+  +++    +a+ Ils+E  H + +r+ 
  gi|300712885|ref|YP_003738697.1|  80 ealqPPEDTADVLSVIDGVIEYEEDAIDTYrslMEAAREADDPVTEDLAIDILSDEESHRSEFRSF 145
                                       9888888888888888888899********33344666777999******************9986 PP

>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   3.2e-05      0.12      59     100 ..      88     138 ..      11     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
                         Caudo_TAP  59 k.........keeqiqqAeqekqqllaqAseqiaplqdavdlgiatdeEka 100
                                                   e+ ++A ++  +l+++A+e+  p +++++++i++deE  
  gi|300712885|ref|YP_003738697.1|  88 TadvlsvidgVIEYEEDAIDTYRSLMEAAREADDPVTEDLAIDILSDEESH 138
                                       1355666667889999*********************************75 PP

>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.3   5.8e-05      0.21      91     142 ..      87     138 ..       2     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.8e-05
                                       HHHHHHH...HHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHH CS
                            DUF892  91 eslkdaaliaaaqavehyEiAsYgtLialAeqlgekeaaklLeqtleeekat 142
                                       +++  + +i    ++e   i +Y++L+ +A++++++ + +l  ++l  e++ 
  gi|300712885|ref|YP_003738697.1|  87 DTADVLSVIDGVIEYEEDAIDTYRSLMEAAREADDPVTEDLAIDILSDEESH 138
                                       23344456788899999*****************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1032.93
//
Query:       gi|300712886|ref|YP_003738698.1|  [L=114]
Description: hypothetical protein HacjB3_17823 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 832.75
//
Query:       gi|300712887|ref|YP_003738699.1|  [L=163]
Description: ISA0963-2 transposase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-15   55.5   0.2    3.5e-14   53.0   0.2    2.0  1  rve       Integrase core domain
    3.2e-10   39.6   0.1     0.0005   19.8   0.0    2.3  2  rve_3     Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.2   3.9e-18   3.5e-14      66     117 ..      31     104 ..       2     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 3.9e-18
                               rve  66 e............pervlsDngseytsk..........afrefladlgirvsftrpgrpqdnGkvErfhrtlkd 117
                                                    +++v++D+gse+++           +f++fl+d++i+++++++grpq+nGk+Erf++t+++
  gi|300712887|ref|YP_003738699.1|  31 IatdsssasqtvpIQEVITDHGSEFVNPrrddrpcldhEFERFLHDNDIDHTLCKVGRPQSNGKIERFFQTYEK 104
                                       3444444445566999**********879******************************************986 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.6e-08    0.0005       2      28 ..      78     104 ..      77     107 .. 0.90
   2 !   17.6   0.0   2.8e-07    0.0025      46      64 ..     112     130 ..     110     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.6e-08
                             rve_3   2 gielsyiapgkPqqNglvEsfngtlrd 28 
                                       +i + + ++g+Pq Ng++E+f++t+ +
  gi|300712887|ref|YP_003738699.1|  78 DIDHTLCKVGRPQSNGKIERFFQTYEK 104
                                       6889999*****************976 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.8e-07
                             rve_3  46 leawredYNteRPHssLgy 64 
                                       l ++++ YN+eRPH sL++
  gi|300712887|ref|YP_003738699.1| 112 LSEFLTFYNEERPHMSLDW 130
                                       67999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1252.06
//
Query:       gi|300712888|ref|YP_003738700.1|  [L=224]
Description: Transcription factor TFIIB cyclin-related protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-16   57.8   0.1    4.9e-13   48.9   0.1    2.3  2  TFIIB           Transcription factor TFIIB repeat
    1.2e-06   27.9   3.5    2.5e-06   26.9   3.5    1.5  1  TF_Zn_Ribbon    TFIIB zinc-binding
  ------ inclusion threshold ------
      0.019   14.4   0.1      0.036   13.5   0.1    1.4  1  DUF3343         Protein of unknown function (DUF3343)
      0.022   14.8   0.0       0.11   12.6   0.0    1.9  2  Cyclin_C        Cyclin, C-terminal domain
      0.076   12.9   0.9       0.16   11.9   0.9    1.5  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain


Domain annotation for each model (and alignments):
>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0018       6.3      39      71 .]      62      94 ..      57      94 .. 0.86
   2 !   48.9   0.1   1.4e-16   4.9e-13       1      70 [.     118     187 ..     118     188 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0018
                                      HHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
                             TFIIB 39 iaAAclyiAcrkeevkrtqkeissvlqVsekti 71
                                      + A+c ++    e + rt+ e ++v++V++ +i
  gi|300712888|ref|YP_003738700.1| 62 VCASCGLVVETDEDLPRTLDELADVSRVEKSEI 94
                                      56778888888899***************9987 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 1.4e-16
                                       HHHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHH CS
                             TFIIB   1 ikrfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekt 70 
                                       ++rf++al+L+ +++ +A+ +++  +ee+ l G+sp   aA ++y  +r++ +  tq +i+s +qVs++ 
  gi|300712888|ref|YP_003738700.1| 118 VPRFCSALGLSGEIQHQANRIIRAGVEERALLGKSPSVFAAGAIYFVSRLCIEGVTQHDIASAVQVSTVA 187
                                       689***************************************************************9875 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   3.5   7.1e-10   2.5e-06       2      32 ..      43      73 ..      42      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 7.1e-10
                                      EETTTTCEECHEETSTTCEEESSSSBEEEEC CS
                      TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdCGlVledn 32
                                      +C +C st++   p rge+vC +CGlV+e +
  gi|300712888|ref|YP_003738700.1| 43 TCLECDSTDVRHVPTRGEIVCASCGLVVETD 73
                                      7*******955559**************975 PP

>> DUF3343  Protein of unknown function (DUF3343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   9.9e-06     0.036      20      54 ..      46      80 ..      31      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.9e-06
                           DUF3343 20 keggiearliplPreis.agCGlalrvneedieeas 54
                                      +   +++r +p+  ei  a+CGl+++ +e d+ + +
  gi|300712888|ref|YP_003738700.1| 46 ECDSTDVRHVPTRGEIVcASCGLVVETDE-DLPRTL 80
                                      445699*********************65.444444 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.26   9.5e+02      23      79 ..      38      94 ..      23     103 .. 0.74
   2 ?   12.6   0.0   3.1e-05      0.11       4      74 ..     115     183 ..     112     205 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.26
                                      HHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC---HHHH CS
                          Cyclin_C 23 rtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehytgyskedl 79
                                      r+  ++ le   +d++ + ++  ++ a++ l++ +  + p   ++l  +++++k+++
  gi|300712888|ref|YP_003738700.1| 38 RATIRTCLECDSTDVRHVPTRGEIVCASCGLVVETDEDLPRTLDELADVSRVEKSEI 94
                                      556677778888888888888888888887777777677778888888888888877 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.1e-05
                                       HHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC-- CS
                          Cyclin_C   4 lsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehytgy 74 
                                         ++ rf+ a +   + e++++a+ ++   + +  +l+ +pS+ Aa+a++ +++   ++  ++ + +  ++
  gi|300712888|ref|YP_003738700.1| 115 AKYVPRFCSALGL--SGEIQHQANRIIRAGVEERALLGKSPSVFAAGAIYFVSRLCIEGVTQHDIASAVQV 183
                                       5667777666443..45999****************************99998887566656555555555 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   4.5e-05      0.16      23      59 ..      36      73 ..      32      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
                    OrfB_Zn_ribbon 23 npayTSktCseCgsknke.alsgrtfkCpnCgfeadrD 59
                                      +p+ T  tC eC s++ +  +++ + +C +Cg++   D
  gi|300712888|ref|YP_003738700.1| 36 SPRATIRTCLECDSTDVRhVPTRGEIVCASCGLVVETD 73
                                      6788889***********999999********997766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1769.62
//
Query:       gi|300712889|ref|YP_003738701.1|  [L=252]
Description: hypothetical protein HacjB3_17838 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-31  109.1   4.6    2.2e-31  109.1   4.6    1.6  2  DUF4396   Domain of unknown function (DUF4396)


Domain annotation for each model (and alignments):
>> DUF4396  Domain of unknown function (DUF4396)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.27   4.8e+03      88      95 ..      65      72 ..      40      99 .. 0.50
   2 !  109.1   4.6   1.2e-35   2.2e-31       2     141 .]     110     241 ..     109     241 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.27
                           DUF4396 88 evgmnlvm 95
                                      ++  n  m
  gi|300712889|ref|YP_003738701.1| 65 DLRTNNSM 72
                                      22222222 PP

  == domain 2  score: 109.1 bits;  conditional E-value: 1.2e-35
                           DUF4396   2 WkraalatlhClaGcaiGdilgmviltslslalglpmaatmilsvvlalllgllletalllrekglslaealktAlk 78 
                                       W+r + +++hC++Gc +G+i+g+vi++  +l l+l+ + ++++ + +a+++g+++++ +ll++ g++++eal++A+ 
  gi|300712889|ref|YP_003738701.1| 110 WRRGFRSVSHCYSGCGAGEITGVVIAV--GL-LSLGKLPVALITFTFAFVFGYTMTVGPLLED-GVGFGEALADAFY 182
                                       ***************************..33.5999*************************96.************* PP

                           DUF4396  79 adtlSmlamevgmnlvmllllgamdaeleltsplfWfslqlsllaGflvalPvNywllkkggK 141
                                       ++t+S+++mev+ + ++l+l g +     + ++lfW +l++sl++G l+a+PvN++llk+g+K
  gi|300712889|ref|YP_003738701.1| 183 SETASIAMMEVVAISTDLWLAGEAT----MGDVLFWSVLVFSLTMGLLAAYPVNVLLLKRGVK 241
                                       ********************87555....5*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1837.55
//
Query:       gi|300712890|ref|YP_003738702.1|  [L=318]
Description: formate/nitrite transporter [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-40  136.4  19.6    1.1e-39  136.2  19.6    1.0  1  Form_Nir_trans  Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2  19.6   6.2e-44   1.1e-39       1     235 [.      37     274 ..      37     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: 136.2 bits;  conditional E-value: 6.2e-44
                                       HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCTTCHHHHHHHHHCCCHHHHHHHHHT---C CS
                    Form_Nir_trans   1 eivekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaesnpglakllgglvFpvGlilvvllgaeLf 77 
                                       ei++++ a++ +++++ +++l+++gi+AG+ i + ++ ++v +a +++       +l+++++p+G++++++++ +L+
  gi|300712890|ref|YP_003738702.1|  37 EIFQRLLASADEEVATGTTELLFSGIAAGFAIVLTFVGHAVGSAVFPN-----NGFLAAILYPLGFVYIIVGRYQLY 108
                                       6889999************************************99842.....3489******************** PP

                                       CCCCCHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGG...HHHHHHHHHCCCSS-HHHHHHHHH CS
                    Form_Nir_trans  78 TgntllltlavlkkkvslkkllknwlvvllgNliGsllvalllvvlsgll...aekllsiaeaklslsfleaflrGi 151
                                       T+ntl  ++ vl++ +sl  ll++w++vl++N++G+ l a++l+ +  l     ++ ++++ + l++ ++++fl++ 
  gi|300712890|ref|YP_003738702.1| 109 TENTLPPVALVLTRLASLPLLLRVWGIVLFANVVGAGLGAFILANSHVLStaaMHAGAEFTRSGLEHAWWDVFLKAL 185
                                       *****8888888****************************888755555333466666777777799********** PP

                                       HHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHCT---HHHHHHHHHHHHHH.....SHHHHHHHCHHHHHHHHH CS
                    Form_Nir_trans 152 lCNwlVclavwlalaakdvigkilaiflpifafvasgfeHsvanmfliplglll.....tvadfilknlipvtlGNi 223
                                       +++wlV+  vwl +aa+d+i+++l+i+ ++++++a+++ H+v   +   + ++l      +  +++  ++pv+lGN+
  gi|300712890|ref|YP_003738702.1| 186 FAGWLVAGVVWLGTAAQDTIARLLLIYSVFYMIAAAELYHVVTAAADALFFVFLdvpspGLLVVFYDFWLPVLLGNT 262
                                       ******************************************999977777766666665667778888******** PP

                                       HHHHCCHHHHHH CS
                    Form_Nir_trans 224 vGGallvgllyl 235
                                       vGG++lv+l+ +
  gi|300712890|ref|YP_003738702.1| 263 VGGVFLVALVNY 274
                                       *********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2257.80
//
Query:       gi|300712891|ref|YP_003738703.1|  [L=52]
Description: hypothetical protein HacjB3_17848 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                       91  (0.00507558); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 407.31
//
Query:       gi|300712892|ref|YP_003738704.1|  [L=101]
Description: hypothetical protein HacjB3_17853 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0024   18.0   0.1      0.012   15.7   0.0    1.8  2  DUF3567   Protein of unknown function (DUF3567)
  ------ inclusion threshold ------
       0.13   12.4   0.0       0.17   11.9   0.0    1.2  1  DUF3071   Protein of unknown function (DUF3071)


Domain annotation for each model (and alignments):
>> DUF3567  Protein of unknown function (DUF3567)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.087   7.8e+02      60      77 ..      11      28 ..       7      37 .. 0.81
   2 !   15.7   0.0   1.3e-06     0.012      30      72 ..      52      94 ..      31      99 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.087
                           DUF3567 60 alieeepseeevddflde 77
                                      +l++++ +e +v++fl +
  gi|300712892|ref|YP_003738704.1| 11 RLQAQSGKESDVEEFLRS 28
                                      678888999999999965 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.3e-06
                           DUF3567 30 rgGyEivDKrakkeiyldGslAesfrkevkalieeepseeevd 72
                                      +g ++    ++++e +l G++A+ + ++ ++l +e p+ ee+d
  gi|300712892|ref|YP_003738704.1| 52 FGIFDTFPDESSREAHLSGEIAAALEENADELFAEPPEIEEID 94
                                      444555556899******************************9 PP

>> DUF3071  Protein of unknown function (DUF3071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.17     100     161 ..       6      65 ..       2      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
                           DUF3071 100 larkahvvredgpakltLgevlaealaargvdleeveWdAwreeseqWvvtvswkagesene 161
                                        a  ++++ ++g++ + ++e+l++al  +++++++++W A r ++++  +  ++  + s++e
  gi|300712892|ref|YP_003738704.1|   6 VALLVRLQAQSGKE-SDVEEFLRSALPIAEEEPDTTTWFALRMDDSTFGIFDTFPDE-SSRE 65 
                                       56666665555555.69****************************998888888543.3344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 808.69
//
Query:       gi|300712893|ref|YP_003738705.1|  [L=184]
Description: intracellular protease, PfpI family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-47  161.7   0.3    1.4e-47  161.6   0.3    1.0  1  DJ-1_PfpI   DJ-1/PfpI family
    3.7e-05   23.4   0.2    8.4e-05   22.3   0.2    1.5  1  Catalase_C  C-terminal domain found in long catalases
  ------ inclusion threshold ------
      0.098   12.2   0.0       0.17   11.5   0.0    1.3  1  GATase_3    CobB/CobQ-like glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   0.3   2.4e-51   1.4e-47       3     165 .]      10     178 ..       8     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 2.4e-51
                                       EEEEEE.TTBEHHHHHHHHHHHHHTTEEEEEEESSTSEEEETTS.....EEEE-SEEGGGCTCCG-SEEEE--BHHH CS
                         DJ-1_PfpI   3 vlvlla.dgvedvElivpvdvlkragikvdvvsvdkeevkgsrG.....lkvtvdaslddvkaaeyDalvlpGGrag 73 
                                       v+v+la  g+e+vE+++p  + + ag ++dvv+ +++ev++ +       ++ v++++++v++++yDalv+pGG  g
  gi|300712893|ref|YP_003738705.1|  10 VAVFLAqRGTEEVEFTEPKGAVEDAGASTDVVGAETGEVQTVNNdldpgDTFEVEKTFSEVSPEDYDALVVPGGSVG 86 
                                       66666669***************************99998876555566**************************** PP

                                       HHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SSSEEEETTEEEES CS
                         DJ-1_PfpI  74 perlrenekvvelvkefaekgklvaaICagpqlLaaagvlkgrrvTsypavkdklekagakyvdkrvvvdgnlvTsr 150
                                       +++lr++  +v+lv+ef e+gk+ + IC+gp++L++a+v++gr++Ts+p++++++++ag ++v ++vvvd+ lvTsr
  gi|300712893|ref|YP_003738705.1|  87 ADQLRADGDAVDLVREFIEAGKPAGVICHGPWMLVEADVVEGRTLTSFPSLQTDIRNAGGEWVNEEVVVDEGLVTSR 163
                                       ***************************************************************************** PP

                                       SGGGHHHHHHHHHHH CS
                         DJ-1_PfpI 151 gpgaaiefalellee 165
                                       +p+++ +f+ +++ee
  gi|300712893|ref|YP_003738705.1| 164 KPDDLDAFCDKIIEE 178
                                       ************995 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   1.4e-08   8.4e-05      19     117 ..      23     125 ..       7     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.4e-08
                        Catalase_C  19 qakalaaalaaegvdvtvvaeklg........saeg.....vnrTYstadaveFDaivvadgaeslfsakataassl 82 
                                       + ++ + a++++g++++vv+ + g         + +     v++T+s  +  ++Da+vv +g        +  a++l
  gi|300712893|ref|YP_003738705.1|  23 EFTEPKGAVEDAGASTDVVGAETGevqtvnndLD-PgdtfeVEKTFSEVSPEDYDALVVPGG--------SVGADQL 90 
                                       4455577888888888888765554544444312.1466779********************........2456789 PP

                        Catalase_C  83 fpagrplqllldayrhgKpigalGsgaealkaagi 117
                                         +g+++ l+++  + gKp g++ +g  +l +a++
  gi|300712893|ref|YP_003738705.1|  91 RADGDAVDLVREFIEAGKPAGVICHGPWMLVEADV 125
                                       9*********************9998777766665 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.8e-05      0.17      36      90 ..      70     122 ..      53     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
                          GATase_3  36 slgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGe 90 
                                         +ed+d++++pGg+  +++l ++   +  + ++e++eag+p   iC G  mL e
  gi|300712893|ref|YP_003738705.1|  70 VSPEDYDALVVPGGSVGADQLRADG--DAVDLVREFIEAGKPAGVICHGPWMLVE 122
                                       33488*********97766666655..5999****************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1350.45
//
Query:       gi|300712894|ref|YP_003738706.1|  [L=88]
Description: manganese containing catalase, partial [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-08   32.9   0.0    3.4e-08   32.8   0.0    1.0  1  Mn_catalase  Manganese containing catalase
  ------ inclusion threshold ------
      0.047   13.7   1.9      0.059   13.4   1.9    1.3  1  HflK_N       Bacterial membrane protein N terminal


Domain annotation for each model (and alignments):
>> Mn_catalase  Manganese containing catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   3.8e-12   3.4e-08     182     258 ..       1      74 [.       1      87 [. 0.85

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3.8e-12
                       Mn_catalase 182 vHqlafekAleeleeeetkvvPvtfakklekqevarkllnlsegeest.egrwakgealdevealevvketkegaai 257
                                       +Hq ++ +Ale ++++    vP +f++  e+q+ +++++   +ge++   +rw++ge++d+++++ + ++++ g  +
  gi|300712894|ref|YP_003738706.1|   1 MHQEQWLAALETIDDHL--PVPNSFPQDEENQDHNYEFMCTFDGEHENpGERWTQGESIDGKGEFSYGRQPGGG--K 73 
                                       8************9988..89999**************98888876651569**************98887655..4 PP

                       Mn_catalase 258 p 258
                                       p
  gi|300712894|ref|YP_003738706.1|  74 P 74 
                                       4 PP

>> HflK_N  Bacterial membrane protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.9   6.5e-06     0.059      14      37 ..      60      85 ..      29      88 .] 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.5e-06
                            HflK_N 14 qgr.n.kggggqgPPDLDEllrdlqd 37
                                      +g+ + +++ g+g PDLDE++  + +
  gi|300712894|ref|YP_003738706.1| 60 KGEfSyGRQPGGGKPDLDEVIEEMHN 85
                                      33445778899**********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 682.85
//
Query:       gi|300712895|ref|YP_003738707.1|  [L=301]
Description: hypothetical protein HacjB3_17868 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.7   0.0        0.2   11.3   0.0    1.1  1  DUF5577   Family of unknown function (DUF5577)
       0.22   11.5   2.7       0.76    9.7   0.0    2.9  3  T2SSF     Type II secretion system (T2SS), protein F


Domain annotation for each model (and alignments):
>> DUF5577  Family of unknown function (DUF5577)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.2e-05       0.2     110     181 ..      67     135 ..      55     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.2e-05
                           DUF5577 110 rlGaeskadtttsgekPtGvfsrlgrtleeeedkasdklsttvdsddddeegsvlqyaGvlkklpksqkkes 181
                                       r  ae   d+  s ++Pt  f  l r  ee+ d   +   ++ d d+ +e g v  y  v++  ++ ++++ 
  gi|300712895|ref|YP_003738707.1|  67 RRDAENHIDVGVSPGQPTEFFQALARAVEEKLDGLDG---AMADGDNPSETGEVAEYIDVVRAYSEDEREQL 135
                                       6679***********************9998887777...77899****************99988887765 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.6      0.15   1.3e+03     101     123 ..      18      40 ..      10      42 .. 0.65
   2 ?    9.7   0.0   8.5e-05      0.76      39      92 ..      47      98 ..      45     100 .. 0.91
   3 ?   -1.8   0.0      0.31   2.8e+03      73      94 ..     113     134 ..     112     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.15
                                       HHHTTXXXXXXXXXXXXXXXXXX CS
                             T2SSF 101 allepllllvvallvllillail 123
                                        ++++l+++++++++  + l+ +
  gi|300712895|ref|YP_003738707.1|  18 GTIGTLFYALMTGIITTVTLVLT 40 
                                       56666666777777666666554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 8.5e-05
                                      HHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH CS
                             T2SSF 39 arrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeer 92
                                       ++l+  gs+++ + ++   ef++ + + i +g + g+ +e++++la+ +ee++
  gi|300712895|ref|YP_003738707.1| 47 SQQLSDLGSFRDHMNNS--MEFRRDAENHIDVGVSPGQPTEFFQALARAVEEKL 98
                                      68899999999999965..59****************************99986 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.31
                                       HHT-HHHHHHHHHHHHHHHHHH CS
                             T2SSF  73 eggnLaevLerlaeyleeerel 94 
                                       e+g +ae+++ +  y e+ere+
  gi|300712895|ref|YP_003738707.1| 113 ETGEVAEYIDVVRAYSEDEREQ 134
                                       7899999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2109.60
//
Query:       gi|300712896|ref|YP_003738708.1|  [L=50]
Description: hypothetical protein HacjB3_17873 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.41
# Mc/sec: 369.42
//
Query:       gi|300712897|ref|YP_003738709.1|  [L=105]
Description: hypothetical protein HacjB3_17878 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 816.64
//
Query:       gi|300712898|ref|YP_003738710.1|  [L=252]
Description: TrkA-C domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-13   48.1   0.0    1.6e-12   47.0   0.0    1.5  1  TrkA_C    TrkA-C domain


Domain annotation for each model (and alignments):
>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   9.1e-17   1.6e-12       2      66 ..     157     223 ..     156     226 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 9.1e-17
                                       EEEEEE--GGGTTSBHHHHTHHHHS-EEEEEE-T.-EEES--T.T-B--TT-EEEEEEEHHHHHHHH CS
                            TrkA_C   2 vevtvpagsplvGktlkelnlrargvlvvairRg.geliipsg.dtvLeeGDvllvvgspsdlaelr 66 
                                       +e+  ++g ++ G +l+elnl+++gv+v+ai R+ g +i ++g d ++++GD+ +++g+ + l+el 
  gi|300712898|ref|YP_003738710.1| 157 AEIDADEGDWITGSPLAELNLPDEGVRVLAIERKdGSYIGAPGsDSEIQPGDTAVFYGQEHRLQELS 223
                                       79999**************************8888999999999******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1976.61
//
Query:       gi|300712899|ref|YP_003738711.1|  [L=253]
Description: Resolvase domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-35  121.2   1.2      5e-35  120.7   1.2    1.2  1  Resolvase  Resolvase, N terminal domain


Domain annotation for each model (and alignments):
>> Resolvase  Resolvase, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   1.2   2.8e-39     5e-35       1     145 [.       3     147 ..       3     148 .. 0.93

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 2.8e-39
                                       EEEEEEES-----THHHHHHHHHHHH-S--..S.E...EEEE.S-TT-TT-HHHHHHHHHHTT-EE.EEEESSCCCC CS
                         Resolvase   1 aigYaRvSteeqddslerQkealrayakenglk.ivkefeDkgvSGakleRpglkrllaalregkgdvlvvekldRL 76 
                                       +++Y+RvSt++q+   +rQ++a+r+  + ++     ++f D g SGa++ R++++rl ++++e   dv+v ++ldRL
  gi|300712899|ref|YP_003738711.1|   3 IAAYVRVSTDDQN--ENRQMRAIRQKYNGEETSnQIEWFCDLGESGASTSRQEYQRLREHVAE--YDVVVAHELDRL 75 
                                       589**********..********998877755556689*************************..************ PP

                                       -S...S-HHHHHHHHHTT-EEEESS.....SS----HHHHHHHHHHHHHHHHHHHHHCT-TTHHHHHHHHHH CS
                         Resolvase  77 aRsvrdlltlleelrekgvslvsldeg...idtstpmgrlllqilaalaeferelirertkeglaaakakGk 145
                                       +Rs +dl+ ++e+lrekg+++  ++++   + +++ m +++l+++ ++a +er++ir r++eg++aa a Gk
  gi|300712899|ref|YP_003738711.1|  76 GRSFADLAGFVEDLREKGIDIDLVNQPigtVGEDDWMAEMMLNMMMVFADAERKMIRSRVQEGIDAAIADGK 147
                                       *************************985666669999********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1776.38
//
Query:       gi|300712900|ref|YP_003738712.1|  [L=631]
Description: transposase IS4 family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-08   33.0   1.6    3.8e-07   30.0   1.6    2.1  1  DDE_Tnp_1    Transposase DDE domain
      9e-06   25.6   0.0    2.3e-05   24.3   0.0    1.6  1  DUF772       Transposase domain (DUF772)
     0.0016   16.8   0.7      0.083   11.1   0.0    2.7  3  DDE_Tnp_1_4  Transposase DDE domain group 1


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   1.6   6.3e-11   3.8e-07      44     208 ..     337     584 ..     297     589 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 6.3e-11
                         DDE_Tnp_1  44 trsglilsvvitpgnvhdskglkqlldelrpr.kgklvlaDaGYasaelldtleekgvdyiirl..kkntklyrk.. 115
                                           l+l++v   +  +  + ++ ll++  ++ + +lv +D+ ++s ++ +t+ee+g++y+ +     n+ + ++  
  gi|300712900|ref|YP_003738712.1| 337 MDVPLVLDIVPRERGQSKDEIVEKLLEHTTQMvDIDLVMMDREFDSDPVKETCEEHGLHYLNPTriFTNSDEAETie 413
                                       33345666666666666677777899999999*****************************8776667777777777 PP

                         DDE_Tnp_1 116 ..........gaeskrrgrlrkhdrnkiltksqkrrnk....................................... 143
                                                         +++k+d++   +k+  +  +                                       
  gi|300712900|ref|YP_003738712.1| 414 wmyrngkrfhV-------TEEKADEGTLTRKQVYLPKRsnsdnededddlsavwteicgewgfedvegepsegmsfs 483
                                       77755444432.......34444444444444444444555555699****************************** PP

                         DDE_Tnp_1 144 ............................................skkekgdvyyvtntnsellsaeevaelyrlRwq 176
                                                                                   +  + +   ++ ++         ++++yr+Rw+
  gi|300712900|ref|YP_003738712.1| 484 rlladiqreedieerkqraqngdvdtsetvvfetnhpyvttrdaDGQQMNGKEFIHMIE-------RLIRWYRHRWG 553
                                       *****************************************988555555555555555.......599******** PP

                         DDE_Tnp_1 177 iErvFkwlkrkfgldrlryrglnrveaqllll 208
                                       iE+ Fk  k  f  + +++++  r++++++++
  gi|300712900|ref|YP_003738712.1| 554 IENGFKKQKH-FMVRTTSTERDYRFFNFAFAC 584
                                       ******9998.999999999988888887776 PP

>> DUF772  Transposase domain (DUF772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.9e-09   2.3e-05       5      68 ..      82     143 ..      80     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.9e-09
                            DUF772   5 yppelmlkllllqylyglSdreleealrenlsfrwflgldleedpvpdhstlsrfRk.rlee.ler 68 
                                       yp ++ +++ ll++l+g  + +l + lr ++s+r  lg+    +++p++st++r  + r+ e l++
  gi|300712900|ref|YP_003738712.1|  82 YPMAVHVRAALLKELNGWDETALHDHLRAHPSLRQKLGF----ESLPNQSTFWRAWNeRFSEqLRD 143
                                       999***********************************8....88*********988888877655 PP

>> DDE_Tnp_1_4  Transposase DDE domain group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   1.4e-05     0.083      55     129 ..      82     152 ..      65     164 .. 0.75
   2 ?   -1.5   0.0     0.096   5.7e+02     200     259 ..     356     415 ..     348     438 .. 0.68
   3 !    2.8   0.1    0.0048        29     320     372 ..     543     589 ..     521     598 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.4e-05
                       DDE_Tnp_1_4  55 HslekllrqrvyalalGyedlndadkLradpalklalgkkealASqptlsRlentlaeealkalrelekalvdkf 129
                                       + ++  +r  +++ + G+++ + +d+Lra p l++ lg +e+l  q+t+ R +n    e+l+   ++ ++ +d +
  gi|300712900|ref|YP_003738712.1|  82 YPMAVHVRAALLKELNGWDETALHDHLRAHPSLRQKLG-FESLPNQSTFWRAWNERFSEQLR---DAVQECADTI 152
                                       5555667777778889**********************.*********99999854444333...3444444444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.096
                       DDE_Tnp_1_4 200 eaLarlvkrirerwpetkilvRgDSafarpellkwceergvdYv..iglaknsrlealiael 259
                                       e++++l++++ +       lv  D  f ++ + ++cee+g++Y+   ++ +ns+ ++ i+ +
  gi|300712900|ref|YP_003738712.1| 356 EIVEKLLEHTTQMVDID--LVMMDREFDSDPVKETCEEHGLHYLnpTRIFTNSDEAETIEWM 415
                                       46677776655444333..7788999999*************97445666666666655555 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.0048
                       DDE_Tnp_1_4 320 elyeqlYcaRGemEnrIKeakldlaadrtsshsfaaNqlrlllsalAynLlaa 372
                                       +l+ + Y++R  +En +K++k ++ ++ ts+++      r +  a+A++L ++
  gi|300712900|ref|YP_003738712.1| 543 RLI-RWYRHRWGIENGFKKQK-HFMVRTTSTER----DYRFFNFAFACVLYNV 589
                                       566.78***************.88888888765....4556666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4232.10
//
Query:       gi|300712901|ref|YP_003738713.1|  [L=40]
Description: hypothetical protein HacjB3_17898 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       100  (0.00557756); expected 358.6 (0.02)
Passed bias filter:                       91  (0.00507558); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.25s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 319.95
//
Query:       gi|300712902|ref|YP_003738714.1|  [L=67]
Description: hypothetical protein HacjB3_17903 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.7   0.0      0.038   14.3   0.0    1.2  1  FdsD      NADH-dependant formate dehydrogenase delta subunit 


Domain annotation for each model (and alignments):
>> FdsD  NADH-dependant formate dehydrogenase delta subunit FdsD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.1e-06     0.038      31      51 ..      12      32 ..       2      40 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-06
                              FdsD 31 kkfWeprMRraLlayleagga 51
                                      ++fW+p+ R+++l+y+++ ++
  gi|300712902|ref|YP_003738714.1| 12 QQFWAPEQRTQILDYVNKRAH 32
                                      79**************55443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 548.57
//
Query:       gi|300712903|ref|YP_003738715.1|  [L=120]
Description: hypothetical protein HacjB3_17908 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00076   19.3   0.0    0.00091   19.1   0.0    1.1  1  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.1e-08   0.00091      80     170 ..       9     103 ..       4     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.1e-08
                                       HHHHHHHHCHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S........SC--TTHHHHHHHHHHHHHCTSH CS
                   Phage_integrase  80 lkellskaleeaeksellfaskrgkplsrqtvrkafkraveeagie........kpltpHtlRhsfataLleagvdl 148
                                       ++ +l++++ e+  +e+ ++s     +++  +r ++kr++ +a+++          l+ H  R+ ++   ++  +d 
  gi|300712903|ref|YP_003738715.1|   9 IEAVLEENSIEDVLREYRMVSP---AITTTGARSVMKRLCAAAELDiptplegpGYLQLHGARRGIGDIFYR--MDH 80 
                                       5556666666667777788877...8999999********************999****************9..679 PP

                                       HHHHHHHT-SSCCHH.HHHHCCC CS
                   Phage_integrase 149 rvvqkllGHssistt.qiYthva 170
                                        + q+l+ H+ ++tt  +Y h +
  gi|300712903|ref|YP_003738715.1|  81 GTAQDLMRHQRLETTkDHYSHID 103
                                       9**************99***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 885.38
//
Query:       gi|300712904|ref|YP_003738716.1|  [L=40]
Description: hypothetical protein HacjB3_17913 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 301.20
//
Query:       gi|300712905|ref|YP_003738717.1|  [L=65]
Description: hypothetical protein HacjB3_17918 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 511.97
//
Query:       gi|300712906|ref|YP_003738718.1|  [L=290]
Description: Cobyrinic acid ac-diamide synthase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-28   99.2   0.0    3.5e-28   98.7   0.0    1.1  1  AAA_31          AAA domain
      8e-11   42.1   0.0    1.4e-10   41.3   0.0    1.4  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
    9.5e-08   31.8   0.3    6.1e-07   29.1   0.1    1.9  2  ParA            NUBPL iron-transfer P-loop NTPase
    1.7e-06   27.5   0.2      5e-05   22.7   0.3    2.4  2  MipZ            ATPase MipZ
    2.2e-06   27.4   0.0    3.8e-06   26.6   0.0    1.3  1  CBP_BcsQ        Cellulose biosynthesis protein BcsQ
     0.0002   20.6   0.0     0.0012   18.1   0.0    2.1  2  ArsA_ATPase     Anion-transporting ATPase
      0.002   17.5   0.0       0.92    8.7   0.0    2.2  2  VirC1           VirC1 protein
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.033   14.0   0.0    1.5  1  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
      0.027   13.9   0.0       0.14   11.6   0.0    2.0  2  Fer4_NifH       4Fe-4S iron sulfur cluster binding proteins, 
      0.031   14.2   0.1      0.059   13.3   0.1    1.4  1  APS_kinase      Adenylylsulphate kinase
      0.069   13.1   0.0          1    9.3   0.0    2.1  2  Glyco_transf_4  Glycosyltransferase Family 4
      0.071   12.7   0.1        4.5    6.8   0.0    2.2  2  SRP54           SRP54-type protein, GTPase domain
       0.18   10.8   0.1        5.8    5.8   0.0    2.1  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   2.6e-31   3.5e-28       5     167 ..      13     178 ..      12     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 2.6e-31
                            AAA_31   5 aianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgi.ekneiektlyevlieeknikeaiiktkven 80 
                                       ai+  KGGvGK+T ++n+a  la +g+ + l+DlD  + +tt+lg+ +  +++++l +++i+ ++ +e++i+t+   
  gi|300712906|ref|YP_003738718.1|  13 AISLLKGGVGKSTIALNIADRLAARGHETVLIDLDKDGHMTTQLGYdDAYDRDTNLGDAVIDGEDPRELLIETE-FG 88 
                                       57778*****************************************55788********************666.56 PP

                            AAA_31  81 ldlipssidLaeaeielvelekkeeil.kellekvkde.YDyiiiDcpPsLglltenaLvasdsviipvqaeayale 155
                                       ++l+ps+ dL ++e++l + +     l ++++e + ++ +Dy+iiD+    g l +naL+a + viip+ ++a +++
  gi|300712906|ref|YP_003738718.1|  89 VYLLPSNDDLENVETRLKDERFADVKLrRNVVEPLIQNgFDYVIIDAAGGRGKLSDNALIAVQRVIIPLIPRAGSIN 165
                                       8****************9999999999678888865555************************************** PP

                            AAA_31 156 Gleqll.ktieev 167
                                       Gl++++ ++i+ +
  gi|300712906|ref|YP_003738718.1| 166 GLNKMIgRQISPI 178
                                       ***9983455555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0     1e-13   1.4e-10       6     104 ..      17     215 ..      13     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1e-13
                                       SSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................ CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................ RF
                              CbiA   6 tkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................ 54 
                                        kGGvGK+t+a+n+a  la rg++++l+D+D ++ +++   g                                   
  gi|300712906|ref|YP_003738718.1|  17 LKGGVGKSTIALNIADRLAARGHETVLIDLDKDGHMTTQ-LGYDD---Aydrdtnlgdavidgedprellietefgv 89 
                                       59***********************************93.22222...2244689999999**************** PP

                                       .........................................................................CCHC CS
                                       .........................................................................xxxx RF
                              CbiA  55 .........................................................................dlkr 58 
                                                                                                                +   
  gi|300712906|ref|YP_003738718.1|  90 yllpsnddlenvetrlkderfadvklrrnvvepliqngfdyviidaaggrgklsdnaliavqrviiplipragS--- 163
                                       ********************************************999999999999999999999999995554... PP

                                       CCHHHHHHCHCHHHH.......EEEEEEEEESS....-TTCHHHHHHHHHHC CS
                                       xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
                              CbiA  59 llellealgkkkall.....lkiagvvlnrvdgene.etllkealeelkqry 104
                                       + +l +++g++ ++      l+i+ v +n++++    +++++  +e+l++++
  gi|300712906|ref|YP_003738718.1| 164 INGLNKMIGRQISPIrenigLDILAVTPNMIRETMGqHNEHRILVENLNREF 215
                                       4444444444444434448899999999999987541344444455555444 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   4.4e-10   6.1e-07      11      47 ..      17      53 ..      12      70 .. 0.86
   2 ?    0.5   0.0      0.25   3.4e+02     112     181 ..     128     200 ..     117     245 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 4.4e-10
                              ParA 11 gKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsi 47
                                       KGGVGKSt+a n+A  La++g+++ l+D+D  G+  
  gi|300712906|ref|YP_003738718.1| 17 LKGGVGKSTIALNIADRLAARGHETVLIDLDKDGHMT 53
                                      5******************************998754 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.25
                              ParA 112 lDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkai.....emfkkvkvkvlGvveNmsgfvcpk 181
                                        Dy+iiD   G g  +l+    + ++ ++i   p+  +++  +k i      + +++ +++l+v  Nm   ++ +
  gi|300712906|ref|YP_003738718.1| 128 FDYVIIDAAGGRG--KLSDNALIAVQRVIIPLIPRAGSINGLNKMIgrqisPIRENIGLDILAVTPNMIRETMGQ 200
                                       6888888887776..455556666666666666666655544443311111355677788888888887666554 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.3   3.6e-08     5e-05       9     129 ..      18     157 ..      13     159 .. 0.57
   2 ?   -3.2   0.0         3   4.1e+03     211     234 ..     246     269 ..     238     281 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.6e-08
                                       STTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHH..HHH..HHHHHHHHHT------E.........EE-SSS CS
                              MipZ   9 kGGsGksttavhvavaLlkkGarvaaidldlrqrtlar..yle..nraataerkglsLplpe.........alalse 72 
                                       kGG Gkst+a+ +a  L+++G++   idld   +  ++  y +  +r        ++ + p+         ++ l++
  gi|300712906|ref|YP_003738718.1|  18 KGGVGKSTIALNIADRLAARGHETVLIDLDKDGHMTTQlgYDDayDRDTNLGDAVIDGEDPRellietefgVYLLPS 94 
                                       9*****************************87654443113221133333333333333333000000011234444 PP

                                       -HH.HHTT...S-HHHHHHHHH.HHHHH.HHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEE CS
                              MipZ  73 aee.aeve...eeeeaevaele.elvad.leaeldfividtPGsdsalsrlahsladtlvtPl 129
                                       ++  ++ve   ++e   +++l+ ++v+  +++ +d+++id+ G   +ls  a      ++ Pl
  gi|300712906|ref|YP_003738718.1|  95 NDDlENVEtrlKDERFADVKLRrNVVEPlIQNGFDYVIIDAAGGRGKLSDNALIAVQRVIIPL 157
                                       443133431112333334444413444424566899999999988888888888888887776 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3
                                       ---B--GGGTTTGGGT--GGGSSS CS
                              MipZ 211 sGlserviyrelfpsGltlldlke 234
                                       +G++er      f +Gl + + +e
  gi|300712906|ref|YP_003738718.1| 246 PGIRERTAISRAFKQGLPVSEFDE 269
                                       677888777777888877665554 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.7e-09   3.8e-06       8     142 ..      16     154 ..      10     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.7e-09
                          CBP_BcsQ   8 GvRGGvGttsllaaLawalhelgesvlviDlspdnlLr..lhFnvdieqregwaraeldgapwrqaaleyapgldll 82 
                                        ++GGvG+++++  +a+ l + g++ ++iDl  d  ++  l ++ ++++++ +  a +dg++ r+  +e   g+ ll
  gi|300712906|ref|YP_003738718.1|  16 LLKGGVGKSTIALNIADRLAARGHETVLIDLDKDGHMTtqLGYDDAYDRDTNLGDAVIDGEDPRELLIETEFGVYLL 92 
                                       589*******************************98861155677789999************************** PP

                          CBP_BcsQ  83 PfGelnveekenlqqlaekaeallaa.lke.lkeqyrwillDlpagasaltrellaladlvl 142
                                       P     ++ +++l+  + ++ +l ++ ++  +++ ++++++D   g  +l  ++l   ++v+
  gi|300712906|ref|YP_003738718.1|  93 PSNDDLENVETRLKDERFADVKLRRNvVEPlIQNGFDYVIIDAAGGRGKLSDNALIAVQRVI 154
                                       *8754444444455544444444444044425599*********999999998887666665 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     9e-07    0.0012       9      38 ..      18      47 ..      16      65 .. 0.95
   2 ?   -0.6   0.0      0.43   5.9e+02     120     133 ..     123     136 ..     102     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9e-07
                                      STTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
                       ArsA_ATPase  9 KGGVGKttvsaatavklsekgkkvllistD 38
                                      KGGVGK+t++  +a +l+  g++++li +D
  gi|300712906|ref|YP_003738718.1| 18 KGGVGKSTIALNIADRLAARGHETVLIDLD 47
                                      9**************************998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.43
                                       HHCSSSSEEEEESB CS
                       ArsA_ATPase 120 vkeeeydvvvlDta 133
                                       + ++ +d+v++D a
  gi|300712906|ref|YP_003738718.1| 123 LIQNGFDYVIIDAA 136
                                       34889*******98 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00067      0.92       8      41 ..      16      49 ..      12      63 .. 0.88
   2 !    6.5   0.0    0.0033       4.6      77     112 ..     121     156 ..     110     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00067
                             VirC1  8 slkGGaGkttalmglcsalasdgkrvalfeaden 41
                                       lkGG Gk+t  + +   la++g+   l + d++
  gi|300712906|ref|YP_003738718.1| 16 LLKGGVGKSTIALNIADRLAARGHETVLIDLDKD 49
                                      58**************************999976 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0033
                             VirC1  77 eeaegeGfdyaladtrgGsseln.ntiiassdllliP 112
                                       e   ++Gfdy+++d+ gG   l  n++ia   + +iP
  gi|300712906|ref|YP_003738718.1| 121 EPLIQNGFDYVIIDAAGGRGKLSdNALIAVQRV-IIP 156
                                       556679***************962566665554.444 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-05     0.033       4      31 ..      20      47 ..      18      54 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
                            CLP1_P  4 dsGKSTlarlLlNyalrkgrkpvyvDlD 31
                                       +GKST+a +++++++ +g+++v++DlD
  gi|300712906|ref|YP_003738718.1| 20 GVGKSTIALNIADRLAARGHETVLIDLD 47
                                      59*************************9 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0001      0.14       8      38 ..      18      48 ..      13      60 .. 0.85
   2 ?   -0.7   0.0      0.58   7.9e+02     215     247 ..     255     287 ..     240     289 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
                         Fer4_NifH  8 kGGiGksttsqnlsaalaemgkkvlivGCDP 38
                                      kGG+Gkst + n++  la++g+  +++  D 
  gi|300712906|ref|YP_003738718.1| 18 KGGVGKSTIALNIADRLAARGHETVLIDLDK 48
                                      9********************9888877665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.58
                         Fer4_NifH 215 rkaelrkktvieyapeseqakeyrelarkilen 247
                                        +a  +   v e++++++q  ++  la+ + e+
  gi|300712906|ref|YP_003738718.1| 255 SRAFKQGLPVSEFDEDCDQIPNFDYLADLVEEH 287
                                       555555567999**************9999876 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.3e-05     0.059      12      60 ..      20      68 ..      13      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
                                      TSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHH.HHHHHH CS
                        APS_kinase 12 gsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfsee.dRkeni 60
                                      g GKstia +++ +L ++g++++l+d d+   +++ +Lg++++ dR++n+
  gi|300712906|ref|YP_003738718.1| 20 GVGKSTIALNIADRLAARGHETVLIDLDKD-GHMTTQLGYDDAyDRDTNL 68
                                      78**********************999985.4588999998765898885 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00075         1       5      33 ..      24      52 ..      19      90 .. 0.80
   2 ?    1.5   0.0      0.19   2.6e+02      10      57 ..     118     164 ..     117     190 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00075
                    Glyco_transf_4  5 erhvleLaraLarrGheVtvvtpgddgpl 33
                                       + +l++a +La+rGhe +++  + dg+ 
  gi|300712906|ref|YP_003738718.1| 24 STIALNIADRLAARGHETVLIDLDKDGHM 52
                                      56789***************966666554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.19
                    Glyco_transf_4  10 eLaraLarrGheVtvv.tpgddgpleeevelvvrvprvplpllkrllrs 57 
                                       ++++ L ++G++ +++ + g++g+l ++   +++v rv +pl +r++ +
  gi|300712906|ref|YP_003738718.1| 118 NVVEPLIQNGFDYVIIdAAGGRGKLSDN--ALIAVQRVIIPLIPRAGSI 164
                                       56677999********977777777777..5666666666665555544 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.031        43      11      38 ..      20      47 ..      14      49 .. 0.92
   2 ?    6.8   0.0    0.0033       4.5      67      94 ..     111     138 ..      96     174 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.031
                                      TSSHHHHHHHHHHHHHHTTS-EEEEEES CS
                             SRP54 11 GaGKTttlaKLaallkkegkkvllvaaD 38
                                      G+GK t +  +a++l ++g++++l+ +D
  gi|300712906|ref|YP_003738718.1| 20 GVGKSTIALNIADRLAARGHETVLIDLD 47
                                      9**********************99888 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0033
                                       CHHHHHHHHHHHHHHTTSSEEEEEE--S CS
                             SRP54  67 dpaavakeavekakeekidvvlvDTaGr 94 
                                         +++ ++ ve   ++++d+v++D aG 
  gi|300712906|ref|YP_003738718.1| 111 ADVKLRRNVVEPLIQNGFDYVIIDAAGG 138
                                       45777888999999************73 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0042       5.8      39      67 ..      20      48 ..      15      55 .. 0.89
   2 ?    2.7   0.0     0.036        50     112     155 ..     118     162 ..     113     171 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0042
                                      TSSHHHHHHHHHHHHHCTT--EEEEEE-- CS
                              MeaB 39 GaGkstlvealglelrrrGkrvavlavDP 67
                                      G+Gkst+  +++ +l++rG+   ++ +D 
  gi|300712906|ref|YP_003738718.1| 20 GVGKSTIALNIADRLAARGHETVLIDLDK 48
                                      9*******************999998886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.036
                                       HHHHHHHHTT-SEEEEEEES.STT.HHHHHHTT-SEEEEEEESSTT CS
                              MeaB 112 evvllleaaGfDvvlietvG.vGq.sevdvaevvdtfvvlllpeaG 155
                                       +vv+ l   GfD v+i+  G  G+ s+ ++++v + +++ l+p+aG
  gi|300712906|ref|YP_003738718.1| 118 NVVEPLIQNGFDYVIIDAAGgRGKlSDNALIAV-QRVIIPLIPRAG 162
                                       666667778********9862565355555554.455555677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2025.08
//
Query:       gi|300712907|ref|YP_003738719.1|  [L=137]
Description: transcriptional regulator, MarR family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-11   41.7   0.0    1.8e-10   40.7   0.0    1.5  1  HTH_20          Helix-turn-helix domain
    1.6e-06   27.5   0.0    2.7e-06   26.8   0.0    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00012   21.9   0.0    0.00026   20.8   0.0    1.5  1  MarR_2          MarR family
    0.00018   21.3   0.0    0.00029   20.6   0.0    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
     0.0012   18.9   0.0     0.0027   17.8   0.0    1.6  2  B-block_TFIIIC  B-block binding subunit of TFIIIC
     0.0012   18.7   0.0     0.0026   17.7   0.0    1.4  2  MarR            MarR family
      0.002   18.0   0.0     0.0041   17.0   0.0    1.4  1  HTH_11          HTH domain
     0.0024   18.0   0.0     0.0036   17.5   0.0    1.3  1  HTH_34          Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.027   14.3   0.0    1.4  1  HTH_IclR        IclR helix-turn-helix domain
      0.017   14.9   0.0       0.03   14.2   0.0    1.4  1  BTG             BTG family
      0.046   13.6   0.0      0.075   12.9   0.0    1.3  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.091   13.3   0.0       0.19   12.2   0.0    1.6  1  HTH_27          Winged helix DNA-binding domain
       0.13   11.9   0.0       0.21   11.2   0.0    1.3  1  RP-C            Replication protein C N-terminal domain
       0.15   12.1   0.0       0.34   10.9   0.0    1.6  2  PadR            Transcriptional regulator PadR-like family


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.4e-13   1.8e-10       2      55 ..      40      93 ..      39      97 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.4e-13
                                      HHHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
                            HTH_20  2 qiaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                                      + ++A+ahP R +il  L++a+g++a+el    + s n l+ HL++L+e  Lv+
  gi|300712907|ref|YP_003738719.1| 40 DRFKAVAHPLRFAILYRLRDADGMSAKELSNMTGRSGNALHSHLDKLVETNLVT 93
                                      689*************************************************98 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.1e-09   2.7e-06       4      48 .]      49      93 ..      47      93 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.1e-09
                            HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                                      ++++IL  L++  ++s +eL+ ++g S ++++ +l++L+e  l++
  gi|300712907|ref|YP_003738719.1| 49 LRFAILYRLRDADGMSAKELSNMTGRSGNALHSHLDKLVETNLVT 93
                                      5799************************************99985 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     2e-07   0.00026       5      52 ..      48      93 ..      44     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2e-07
                                      HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
                            MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                                      p  + +L+ L++++g  ++++el   +g s  a++ +l++Lv+  Lv+
  gi|300712907|ref|YP_003738719.1| 48 PLRFAILYRLRDADG--MSAKELSNMTGRSGNALHSHLDKLVETNLVT 93
                                      56789**********..*****************************97 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.3e-07   0.00029       2      46 ..      48      93 ..      47      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.3e-07
                                      HHHHHHHHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                             HTH_5  2 ptRlkILklLaege.lcvcelaeelglsqstvShHLkkLreaGLVe 46
                                      p R  IL+ L++   +++ el++++g s  ++  HL kL e +LV+
  gi|300712907|ref|YP_003738719.1| 48 PLRFAILYRLRDADgMSAKELSNMTGRSGNALHSHLDKLVETNLVT 93
                                      8899********666*****************************96 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.8   8.7e+03      22      40 ..      24      43 ..      22      45 .. 0.74
   2 !   17.8   0.0   2.1e-06    0.0027      17      51 ..      61      95 ..      49     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.8
                    B-block_TFIIIC 22 sdLakesk.qdprslfyrlk 40
                                       +L  e++ q+ ++++ r k
  gi|300712907|ref|YP_003738719.1| 24 AELLEETNpQELSDFTDRFK 43
                                      57778888888888888776 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.1e-06
                    B-block_TFIIIC 17 sGitqsdLakeskqdprslfyrlksLekkgLIvkq 51
                                      +G+  ++L++ ++ +++ l+++l++L + +L++  
  gi|300712907|ref|YP_003738719.1| 61 DGMSAKELSNMTGRSGNALHSHLDKLVETNLVTHW 95
                                      79999***************************965 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.2   9.2e+03      12      23 ..      27      38 ..      25      42 .. 0.57
   2 !   17.7   0.0     2e-06    0.0026       5      48 ..      50      93 ..      48     101 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.2
                                      HHHSTTEEHHHH CS
                              MarR 12 lyeqgplsvseL 23
                                      l+e +p+ +s+ 
  gi|300712907|ref|YP_003738719.1| 27 LEETNPQELSDF 38
                                      556666666655 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2e-06
                                      HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                              MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                                      +f iL+ l++ +++s +eL ++ g s  ++   ld+L++ +l++
  gi|300712907|ref|YP_003738719.1| 50 RFAILYRLRDADGMSAKELSNMTGRSGNALHSHLDKLVETNLVT 93
                                      699***************************************97 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.2e-06    0.0041       3      42 ..      51      89 ..      50      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.2e-06
                            HTH_11  3 lqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeel 42
                                      ++il +L++a+g +s++eL+  +++S  + + ++++L e+
  gi|300712907|ref|YP_003738719.1| 51 FAILYRLRDADG-MSAKELSNMTGRSGNALHSHLDKLVET 89
                                      78*********9.9**********************9554 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.8e-06    0.0036       1      53 [.      49     101 ..      49     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.8e-06
                            HTH_34   1 vRlavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgk 53 
                                       +R+a+l  L ++d ++++el++ ++ +  +L +hl+kL + + ++  k+ +  
  gi|300712907|ref|YP_003738719.1|  49 LRFAILYRLRDADGMSAKELSNMTGRSGNALHSHLDKLVETNLVTHWKQTDPE 101
                                       6***************************************9999988877654 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.1e-05     0.027       6      49 ..      51      93 ..      51      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-05
                                      HHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                          HTH_IclR  6 laiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                                      +aiL  l+ a++ ++ +el++ tg +  + h +L  Lve  +v+
  gi|300712907|ref|YP_003738719.1| 51 FAILYRLRDADG-MSAKELSNMTGRSGNALHSHLDKLVETNLVT 93
                                      578888888888.9**************************9996 PP

>> BTG  BTG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.4e-05      0.03      21      74 ..      70     125 ..      63     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
                                       TB-HHHHHHHHHHHHHHHHHHHHTT--TTSTTTTHHHH-E......ETTT-THHHH CS
                               BTG  21 klerekveaFaeeLeelLeerykehWypekPerGsayRcirink..kekldpvlek 74 
                                       +++ ++ +a++++L +l e++  +hW++ +Pe+ + y   +i+    +++d  +e 
  gi|300712907|ref|YP_003738719.1|  70 NMTGRSGNALHSHLDKLVETNLVTHWKQTDPEKHQPYSYYAISGlgARTIDFAVEL 125
                                       5667788999*************************999877765435555555555 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-05     0.075      21      65 ..      61     111 ..      53     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
                                       CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST......TTEEEE- CS
                              TrmB  21 gpatadeiaeelgvprskvYevLrsLedkGlVerekgr......pklYrav 65 
                                       + ++a+e+++++g++ +   + L +L++  lV+  k++      p+ Y a+
  gi|300712907|ref|YP_003738719.1|  61 DGMSAKELSNMTGRSGNALHSHLDKLVETNLVTHWKQTdpekhqPYSYYAI 111
                                       5789******************************99999999999999887 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.19       6      51 ..      51      97 ..      47     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
                            HTH_27  6 alvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLv..ert 51
                                       ++L  +r   +++++++l+ ++ ++  + ++ l+kL+e  Lv   ++
  gi|300712907|ref|YP_003738719.1| 51 FAILYRLR-DADGMSAKELSNMTGRSGNALHSHLDKLVETNLVthWKQ 97
                                      57899999.99********************************44333 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00016      0.21      73     103 ..      64      94 ..      62     101 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
                              RP-C  73 sNaqLsralglsestlrrhlaaLveaGliir 103
                                       s+++Ls+ +g+s  +l  hl +Lve  l+++
  gi|300712907|ref|YP_003738719.1|  64 SAKELSNMTGRSGNALHSHLDKLVETNLVTH 94 
                                       899*************************986 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         2   2.6e+03      36      50 ..      52      66 ..      33      79 .. 0.64
   2 ?   10.9   0.0   0.00027      0.34      33      72 ..      78     118 ..      64     120 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
                                      HHHHHHHHTTSEEEE CS
                              PadR 36 paLkrLekeglvese 50
                                       +L rL++ +  +++
  gi|300712907|ref|YP_003738719.1| 52 AILYRLRDADGMSAK 66
                                      577788776655555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00027
                                       HHHHHHHHHHHTTSEEEEEE-S.TSSS-EEEEEESHCCCHH CS
                              PadR  33 slYpaLkrLekeglvesewees.gegpprkyYrlTdaGrre 72 
                                        l   L++L + +lv++ ++++ ++ +p  yY++   G r+
  gi|300712907|ref|YP_003738719.1|  78 ALHSHLDKLVETNLVTHWKQTDpEKHQPYSYYAISGLGART 118
                                       56778************999999999********9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1036.67
//
Query:       gi|300712908|ref|YP_003738720.1|  [L=227]
Description: hypothetical protein HacjB3_17933 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1788.77
//
Query:       gi|300712909|ref|YP_003738721.1|  [L=408]
Description: cell division control protein 6 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-20   71.8   0.1    8.2e-20   70.6   0.1    1.7  1  Cdc6_C           CDC6, C terminal winged helix domain
    8.4e-11   42.3   0.0    1.9e-10   41.2   0.0    1.6  1  AAA_22           AAA domain
    5.4e-09   36.7   0.0      7e-08   33.0   0.0    2.5  2  AAA_16           AAA ATPase domain
    4.3e-07   30.4   0.0    9.4e-07   29.3   0.0    1.6  1  AAA              ATPase family associated with various cellul
    0.00088   19.3   0.0     0.0014   18.6   0.0    1.3  1  ATPase_2         ATPase domain predominantly from Archaea
      0.001   19.0   0.0     0.0018   18.2   0.0    1.4  1  NACHT            NACHT domain
     0.0011   18.4   0.0      0.002   17.5   0.0    1.3  1  TniB             Bacterial TniB protein
     0.0018   17.5   0.0     0.0031   16.7   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
     0.0053   16.8   0.0      0.021   14.8   0.0    2.0  2  AAA_5            AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.016   15.6   0.0       0.03   14.7   0.0    1.4  1  RNA_helicase     RNA helicase
      0.017   15.7   0.0      0.044   14.3   0.0    1.8  1  AAA_18           AAA domain
      0.025   14.1   0.0      0.042   13.4   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
      0.028   13.2   0.2        1.9    7.2   0.0    2.1  2  AAA_32           AAA domain
       0.06   13.2   0.0       0.12   12.3   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
      0.073   12.8   0.0       0.18   11.5   0.0    1.6  2  Sigma54_activat  Sigma-54 interaction domain
        0.1   11.7   0.0       0.15   11.2   0.0    1.3  1  NB-ARC           NB-ARC domain
       0.14   12.2   0.0       0.26   11.3   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro


Domain annotation for each model (and alignments):
>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.1   7.8e-23   8.2e-20       1      82 [.     303     382 ..     303     384 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 7.8e-23
                                       HHHHHHHHCHCSSS-EEHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEEE-CC.C-EEEEEEESSS CS
                            Cdc6_C   1 LcalvlllrksgkeevttgevyevYkslCesegvdpltqrevsdllseLemlgileleksskGrregrtrkisLnvd 77 
                                       L+a+++ +  +g+++++t+++ye+Y +lC+s g d l qr+v+++ls+L mlgil++ +++ G+r g+++ ++L+v+
  gi|300712909|ref|YP_003738721.1| 303 LLAVISKTA-KGETPCRTRDIYEEYLTLCNSSGTDSLAQRSVHNHLSDLRMLGILSAYENRSGSR-GNYYSYELDVP 377
                                       899999999.******************************************************7.**********9 PP

                                       CHHHH CS
                            Cdc6_C  78 pddvl 82 
                                           +
  gi|300712909|ref|YP_003738721.1| 378 FTSAI 382
                                       87665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.8e-13   1.9e-10       7     126 ..      51     178 ..      48     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.8e-13
                            AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelka...erlsseell 79 
                                        ++++G +G+GKT +   lle+l+++ +  e  + +v++ +++ ++ss +++ el+++l   + +    +  ++ ++
  gi|300712909|ref|YP_003738721.1|  51 NIFLYGNTGVGKTAVTDYLLERLQNDVSEYEdIDLSVISLNCKTLNSSYQVAVELVNKLRPAGGEissTGYPQQTVF 127
                                       689********************876554447999999**********************77777997778888888 PP

                            AAA_22  80 ealeqalraravielliiDEaqhlr.seealeeL.rsllnl..srkgvqli 126
                                       ++l++ ++a + + ll++DE++ +  ++e+l eL r ++n+  ++ +v +i
  gi|300712909|ref|YP_003738721.1| 128 KKLYKEFEAIGGTILLVLDEIDSIGaRDELLYELpRARANNnlDTAKVGVI 178
                                       ************************777*******99999986655555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   6.6e-11     7e-08       5      69 ..      29      99 ..      27     173 .. 0.72
   2 ?   -1.5   0.1       2.6   2.8e+03      74     101 ..     251     278 ..     218     322 .. 0.53

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 6.6e-11
                            AAA_16  5 ReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekd.......ggiflrgkcdqlesaipy 69
                                      R+ee+++  +al++v +g + ++++l+G+ GvGK+++ + ll++l+ d       +  +++ +c+ l  + +y
  gi|300712909|ref|YP_003738721.1| 29 RDEEIDEYMDALQPVVDGWEpNNIFLYGNTGVGKTAVTDYLLERLQNDvseyediDLSVISLNCKTL--NSSY 99
                                      9*****************888**************************95555555444555555555..2233 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.6
                            AAA_16  74 qalareellrqlldeaesaeleawrekl 101
                                       qal+  +l  ++++++++++ e+++ + 
  gi|300712909|ref|YP_003738721.1| 251 QALDLLRLAGEIAENSDADLIERDHVEG 278
                                       3333334444444444443333333322 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   8.9e-10   9.4e-07       2     130 ..      53     205 ..      52     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 8.9e-10
                                       EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS................STTHHHHHHHHHHHH CS
                               AAA   2 llyGppGtGKTllakavakel..........gvefleisgsellsk................yvgesekkirelfke 52 
                                        lyG+ G+GKT++   + + l          + +++++++++l s+                 ++ +    + +fk+
  gi|300712909|ref|YP_003738721.1|  53 FLYGNTGVGKTAVTDYLLERLqndvseyediDLSVISLNCKTLNSSyqvavelvnklrpaggEISSTGYPQQTVFKK 129
                                       79******************844443333334779********9889*************99666666666666666 PP

                                       HHHTS....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESS...GGGSTHHHHST CS
                               AAA  53 akeka....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnr...pdkldpallrg 122
                                       + ++     ++  l++DEid+++ ++         +++ +L ++  + + +++kv vig++n+    d+ldp +   
  gi|300712909|ref|YP_003738721.1| 130 LYKEFeaigGTILLVLDEIDSIGARD---------ELLYELPRARANNNLDTAKVGVIGISNDfkfRDQLDPRVQDT 197
                                       53333357667999********7776.........677777777777777799**********88889999988755 PP

                                       TSSEEEET CS
                               AAA 123 Rfdrkiei 130
                                        ++r++++
  gi|300712909|ref|YP_003738721.1| 198 LCERELHF 205
                                       66666655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.4e-06    0.0014      12     166 ..      41     182 ..      28     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.4e-06
                          ATPase_2  12 eeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpk 88 
                                       + +++  + + +f+YG  g+GKta+   ++e+l++   +v   ++ +++++s ++   ++ +++ +++  l ++++ 
  gi|300712909|ref|YP_003738721.1|  41 QPVVDGWEPNNIFLYGNTGVGKTAVTDYLLERLQN---DV---SEYEDIDLSVISLNCKTLNSSYQVAVELVNKLRP 111
                                       455555566778*********************55...33...3334444444444444446667777777788888 PP

                          ATPase_2  89 aeleeilk..eksklvfkaielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnliesltkekhlcvvic 163
                                       a + ei++    ++ vfk++ + +e+i   g  i +++De+  ++        +l++eL ++  +   ++ ++ vi 
  gi|300712909|ref|YP_003738721.1| 112 AGG-EISStgYPQQTVFKKLYKEFEAI---GGTILLVLDEIDSIG-----ARDELLYELPRARANNNLDTAKVGVIG 179
                                       777.66663555556666555555555...5559*******9999.....346888888777766666666666665 PP

                          ATPase_2 164 lsS 166
                                        s 
  gi|300712909|ref|YP_003738721.1| 180 ISN 182
                                       555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.8e-06    0.0018       3      98 ..      52     156 ..      50     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.8e-06
                                       EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC.-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C....... CS
                             NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga.fklvFflslrelsrsgnarsladllfsqlpepaapvse....... 71 
                                       ++l G  G+GKT+    l + ++ +  + +     v+ l++++l+ s     +a  l+ +l + ++++s        
  gi|300712909|ref|YP_003738721.1|  52 IFLYGNTGVGKTAVTDYLLERLQNDVSEYEDiDLSVISLNCKTLNSSY---QVAVELVNKLRPAGGEISStgypqqt 125
                                       789**********99999999999998887767789**********95...66777777777777777777777888 PP

                                       ....CHHHHCCSCCCEEEEEE-STT-SS-TC CS
                             NACHT  72 ....vwavllelperlLlilDglDelvtdlg 98 
                                             ++  ++   +Ll+lD +D + + ++
  gi|300712909|ref|YP_003738721.1| 126 vfkkLYKEFEAIGGTILLVLDEIDSIGARDE 156
                                       55555555555666789*******9998554 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.9e-06     0.002      15     131 ..      29     151 ..      21     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.9e-06
                              TniB  15 rakeilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedae.kvpvlvvqappkpdekrlyaai 90 
                                       r +ei e +++L  + +  +++n+ l+G++ +GKt++ +   ++ +++ +e ++  + v+ +++ +  +  +   ++
  gi|300712909|ref|YP_003738721.1|  29 RDEEIDEYMDALQPVVDGWEPNNIFLYGNTGVGKTAVTDYLLERLQNDVSEYEDiDLSVISLNCKTLNSSYQVAVEL 105
                                       66788899999999999999******************9999887777665555278******************** PP

                              TniB  91 Lealgaplkararvskle....qqvlrllrelk.vrvLiiDEihnl 131
                                       +++l+    +  ++   +    ++ ++ +++++ + +L++DEi+++
  gi|300712909|ref|YP_003738721.1| 106 VNKLRPAGGEISSTGYPQqtvfKKLYKEFEAIGgTILLVLDEIDSI 151
                                       ****988666655554440000444555666652567899***987 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.9e-06    0.0031      26      95 ..      22      98 ..       6     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.9e-06
                            DUF815 26 klddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg.......Lrlievekedlkel 95
                                      + d++ + d++ ++ ++  +  ++g + nn++L+G+ G+GK ++   ll++++++        L +i ++ ++l++ 
  gi|300712909|ref|YP_003738721.1| 22 QPDQIEERDEEIDEYMDALQPVVDGWEPNNIFLYGNTGVGKTAVTDYLLERLQNDVseyedidLSVISLNCKTLNSS 98
                                      6678889999999999999*****************************99999887777777788888887777665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     2e-05     0.021       1      29 [.      51      80 ..      51      85 .. 0.85
   2 ?   -1.9   0.0       2.9   3.1e+03      70      78 ..     144     152 ..     128     196 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-05
                                      EEEEE--SSSSHHHHHHHGGGGB.S--EEE CS
                             AAA_5  1 dvlLvGppGtgKselaerlaaal.nrevey 29
                                      +++L G++G+gK+ ++++l+++l n+  ey
  gi|300712909|ref|YP_003738721.1| 51 NIFLYGNTGVGKTAVTDYLLERLqNDVSEY 80
                                      689********************5555544 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
                                       EEESGGG-- CS
                             AAA_5  70 vlDEverae 78 
                                       vlDE++ + 
  gi|300712909|ref|YP_003738721.1| 144 VLDEIDSIG 152
                                       566665433 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.8e-05      0.03       1      28 [.      52      79 ..      52     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-05
                      RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklkl 28
                                      i+lyG++g+GK+ ++++L ++l++++ +
  gi|300712909|ref|YP_003738721.1| 52 IFLYGNTGVGKTAVTDYLLERLQNDVSE 79
                                      79********************988743 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.1e-05     0.044       1      34 [.      52      80 ..      52     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.1e-05
                            AAA_18  1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvake 34
                                      I+l G  GvGKt ++++L +rl++             
  gi|300712909|ref|YP_003738721.1| 52 IFLYGNTGVGKTAVTDYLLERLQNdvsE--------Y 80
                                      89****************9998444330........2 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     4e-05     0.042      35      70 ..      51      86 ..      48     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-05
                             AAA_7 35 pvllvGptGtGKtviikdllkkldkekylsltinfs 70
                                      +++l+G+tG+GKt+++  ll++l+++   +  i +s
  gi|300712909|ref|YP_003738721.1| 51 NIFLYGNTGVGKTAVTDYLLERLQNDVSEYEDIDLS 86
                                      789********************9887776666665 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0018       1.9      32      63 ..      51      82 ..      47      84 .. 0.90
   2 ?    3.8   0.1     0.019        20     476     509 ..     248     281 ..     234     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0018
                            AAA_32 32 NifvlGesgtGrttlvkrlleeiakkeptpdD 63
                                      Nif+ G++g+G+t ++  lle+ +++ +  +D
  gi|300712909|ref|YP_003738721.1| 51 NIFLYGNTGVGKTAVTDYLLERLQNDVSEYED 82
                                      9*********************9998887777 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.019
                            AAA_32 476 rfseiadllrEAdywakkegaevveaehVekAle 509
                                       + ++  dllr A  +a++++a+++e++hVe A +
  gi|300712909|ref|YP_003738721.1| 248 SARQALDLLRLAGEIAENSDADLIERDHVEGARA 281
                                       567889************************9965 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011      0.12      90     130 ..      37      80 ..      11      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                                       HHHHHHHCTT...SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
                       RsgA_GTPase  90 leelkellkd...ktsvlvGqSGvGKStLinallpelelktgev 130
                                       +++l++++++   + ++l G++GvGK+++ + ll++l+  ++e 
  gi|300712909|ref|YP_003738721.1|  37 MDALQPVVDGwepNNIFLYGNTGVGKTAVTDYLLERLQNDVSEY 80 
                                       44555444433338899******************999988875 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00017      0.18       6      62 ..      31      96 ..      26     106 .. 0.67
   2 ?   -2.8   0.0       4.2   4.4e+03      92     105 ..     136     151 ..     133     159 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
                                      HHHHHHHHHHHHHCTSS..S-EEEECSTTSSHHHHHHHHHH.......HSTTTTS-EEEEETTTS- CS
                   Sigma54_activat  6 ealkelleqikkvaktd..lsvlitGesGtGKellaraihe.......askrkekpfvavncaaip 62
                                      e++ e ++ ++ v++     ++++ G++G+GK+ + + + e       + +  + +++++nc  ++
  gi|300712909|ref|YP_003738721.1| 31 EEIDEYMDALQPVVDGWepNNIFLYGNTGVGKTAVTDYLLErlqndvsEYEDIDLSVISLNCKTLN 96
                                      566666666777765433389****************99884444432223334466777776665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.2
                                       TTTSE..EEEETGGGS CS
                   Sigma54_activat  92 adgGt..lfLDeigel 105
                                       a gGt  l LDei ++
  gi|300712909|ref|YP_003738721.1| 136 AIGGTilLVLDEIDSI 151
                                       4455522568999876 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.15      17     112 ..      48     148 ..      29     168 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                                       TSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEE....SXXHHHHHHHXXHHHHHCCCTTSSSS-ST CS
                            NB-ARC  17 elqslvvalvGmgGvGKttlakqilnksdevegrFdsvawvvvs....ktdkseeiletilkeLslseddleekeev 89 
                                       e++   ++l+G  GvGKt +    l+ +++  ++++ +   v+s       +s+++  +++++L  +  ++++    
  gi|300712909|ref|YP_003738721.1|  48 EPN--NIFLYGNTGVGKTAVTDYLLERLQNDVSEYEDIDLSVISlnckTLNSSYQVAVELVNKLRPAGGEISSTGYP 122
                                       444..79***************9999999999999976666666222144567888888888888887777665433 PP

                                       TS.HHHHHHHHCCCT..TEEEEEEEE CS
                            NB-ARC  90 es.lkrklvrlLltk..rfllvlDDV 112
                                       ++   +kl++  +      llvlD +
  gi|300712909|ref|YP_003738721.1| 123 QQtVFKKLYKEFEAIggTILLVLDEI 148
                                       33466777777765445778888876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.26       7      44 ..      33      74 ..      24      81 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
                                      HHHHHHHHHHCH....TEEEEEEESTTSSHHHHHHHHHHHTT CS
                              TsaE  7 tealgkklakal....gdvilLeGdLGaGKTtlvrglakalg 44
                                      +++   +l+ ++     + i+L+G+ G+GKT+ +  l++ l+
  gi|300712909|ref|YP_003738721.1| 33 IDEYMDALQPVVdgwePNNIFLYGNTGVGKTAVTDYLLERLQ 74
                                      4455555555444444456******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 2956.81
//
Query:       gi|300712910|ref|YP_003738722.1|  [L=101]
Description: hypothetical protein HacjB3_17943 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.11   12.5   0.1    1.1  1  POR       Pyruvate ferredoxin/flavodoxin oxidoreductase


Domain annotation for each model (and alignments):
>> POR  Pyruvate ferredoxin/flavodoxin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.3e-06      0.11      48     113 ..       7      67 ..       2      96 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.3e-06
                                       .-SSS--TTSEEEEEESSHHHHHHHGGGEEEEEEEEEECTCGTT-CCHHHCTS-HHHHHHHT-EEE CS
                               POR  48 pivpsievgeadllvaldaetlsehldglkpggiiiynseelkpdelkkakeeerelkerlgvrvy 113
                                       p v ++  +++d+l a+d + + ehl+   + +i+iy  + ++ +    ++e++ ++     v+v+
  gi|300712910|ref|YP_003738722.1|   7 PAVYYQLSDTVDVLAAFDRAGI-EHLEVSAERTIVIYSRTIFDFEIDSGRLEDAQTVT----VEVF 67 
                                       556666669*********9999.****99999****9997666555544444443333....3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 763.30
//
Query:       gi|300712911|ref|YP_003738723.1|  [L=54]
Description: hypothetical protein HacjB3_17948 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.0   0.1    1.4e-10   41.0   0.1    1.0  1  TRAM      TRAM domain


Domain annotation for each model (and alignments):
>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1     8e-15   1.4e-10      11      61 ..       2      49 ..       1      50 [. 0.96

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 8e-15
                                      EEEEE-.TTSEEEEEET.TEEEEETT--T..TEEEEEEEEEE-SSEEEEEE CS
                              TRAM 11 lveglsksegegiGrtdngkvvfvpgdlpgIGdfVeVkItkvkrqyLrGel 61
                                      ++  l+ ++g+gi r+++g+vv+vp+++p   ++V+V+I+ v+++++++++
  gi|300712911|ref|YP_003738723.1|  2 TIDTLG-DQGDGITRVERGYVVIVPDAEP--DEEVTVEIDTVQSNVAFASI 49
                                      688999.**********************..******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 433.03
//
Query:       gi|300712912|ref|YP_003738724.1|  [L=56]
Description: hypothetical protein HacjB3_17953 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 470.34
//
Query:       gi|300712913|ref|YP_003738725.1|  [L=124]
Description: hypothetical protein HacjB3_17958 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.14   11.5   0.0    1.1  1  NHase_alpha  Nitrile hydratase, alpha chain


Domain annotation for each model (and alignments):
>> NHase_alpha  Nitrile hydratase, alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.7e-06      0.14       7      72 ..      15      80 ..       9     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.7e-06
                       NHase_alpha  7 vkaleelliekglitakeldelvevleaevgpangarvvarAWtdpefkarlledataaieelgle 72
                                       +al++   ++  + ++  ++l +++e++  +   a+ + r W +p f+ ++l +  +a+++lg+ 
  gi|300712913|ref|YP_003738725.1| 15 LQALHDTAPQRYSLLERYAEDLRQAFEQSGRNYASAKQLYRTWDNPPFEPQILGQLLSAAADLGVL 80
                                      5677777777777788888899999****9********************************9983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1018.86
//
Query:       gi|300712914|ref|YP_003738726.1|  [L=96]
Description: transcriptional regulator, PadR-like family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-16   60.7   0.8    1.3e-16   60.3   0.8    1.1  1  PadR      Transcriptional regulator PadR-like family
    0.00028   21.3   0.0    0.00037   20.9   0.0    1.3  1  HTH_27    Winged helix DNA-binding domain
     0.0008   19.2   0.0     0.0011   18.7   0.0    1.2  1  DUF1495   Winged helix DNA-binding domain (DUF1495)
    0.00084   19.3   0.1     0.0011   18.9   0.1    1.2  1  HTH_45    Winged helix-turn-helix
     0.0037   17.1   0.4        0.6   10.0   0.0    2.9  3  MarR_2    MarR family
  ------ inclusion threshold ------
       0.02   14.7   0.0      0.032   14.1   0.0    1.2  1  TrmB      Sugar-specific transcriptional regulator TrmB
      0.036   13.8   0.0      0.047   13.4   0.0    1.1  1  DUF4364   Domain of unknown function (DUF4364)


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.8   4.9e-20   1.3e-16       1      74 [.      11      79 ..      11      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 4.9e-20
                                      HHHHH.CCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
                              PadR  1 iLall.eeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74
                                      +L+++ +  + +G++++ ele +++   e+++G+lYp+L++L ++glve+++++    +++++Y+lT++G+rel+
  gi|300712914|ref|YP_003738726.1| 11 LLYVIgGLDDPHGLALKAELEGYYDK--EIQHGRLYPNLDTLVDKGLVEKSQQD----RRTNLYKLTARGQRELS 79
                                      58888444788************997..***********************998....7**************96 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.4e-07   0.00037      20      68 .]      25      74 ..       4      74 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.4e-07
                            HTH_27 20 kl.adlcgrlnvedshis.y.slkkLtekGLvertgdeadrrekrvrlTdkG 68
                                      +l a+l g+++ e +h+  y +l+ L+ kGLv  +++ +drr+ +++lT+ G
  gi|300712914|ref|YP_003738726.1| 25 ALkAELEGYYDKEIQHGRlYpNLDTLVDKGLV--EKSQQDRRTNLYKLTARG 74
                                      3448888999988888887449**********..555678**********98 PP

>> DUF1495  Winged helix DNA-binding domain (DUF1495)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.5e-07    0.0011      53      85 ..      44      76 ..      39      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.5e-07
                           DUF1495 53 ynsessLielGLveeeeeseglklYklteeGie 85
                                      y + + L+ +GLve+ ++++ ++lYklt +G++
  gi|300712914|ref|YP_003738726.1| 44 YPNLDTLVDKGLVEKSQQDRRTNLYKLTARGQR 76
                                      677789************************986 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   4.4e-07    0.0011      27      72 ..      34      84 ..      27      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.4e-07
                            HTH_45 27 ykanLsykllnkYLdmLvekgli.....kkskekYvlTekGlelleklkel 72
                                      y+ +++  +l   Ld+Lv+kgl+     + +++ Y+lT++G++ l+  +e 
  gi|300712914|ref|YP_003738726.1| 34 YDKEIQHGRLYPNLDTLVDKGLVeksqqDRRTNLYKLTARGQRELSARREW 84
                                      5666777778888**********88765557899********999877765 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.042   1.1e+02       2      20 ..       3      21 ..       2      31 .. 0.82
   2 !   10.0   0.0   0.00024       0.6      42      61 ..      47      64 ..      45      65 .. 0.87
   3 ?    1.1   0.0      0.14   3.6e+02      24      43 ..      75      94 ..      69      96 .] 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.042
                                      T--HHHHHHHHHHHCTTTS CS
                            MarR_2  2 gltpaqarvLaaLgrrpgr 20
                                      +lt+ q+++L+++g  +++
  gi|300712914|ref|YP_003738726.1|  3 DLTGFQRDLLYVIGGLDDP 21
                                      78999********998875 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00024
                                      HHHHHHTTSEEEEESSSSSS CS
                            MarR_2 42 lkrLvaaGLverrpgpeDkR 61
                                      l+ Lv++GLve++    D+R
  gi|300712914|ref|YP_003738726.1| 47 LDTLVDKGLVEKSQQ--DRR 64
                                      789********9955..999 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.14
                                      HHHHHHHHTSSHHHHHHHHH CS
                            MarR_2 24 vgelarrlglsksavsrilk 43
                                      ++el +r   ++++++ +l+
  gi|300712914|ref|YP_003738726.1| 75 QRELSARREWEQQYLHDTLN 94
                                      6899999999****999987 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.032      34      63 ..      38      69 ..      35      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                                      SSCHCHHHHHHHHHHCTSEEEESST..TTEEE CS
                              TrmB 34 vprskvYevLrsLedkGlVerekgr..pklYr 63
                                      + + + Y  L  L+dkGlVe++++   ++lY+
  gi|300712914|ref|YP_003738726.1| 38 IQHGRLYPNLDTLVDKGLVEKSQQDrrTNLYK 69
                                      677899999*************9775566887 PP

>> DUF4364  Domain of unknown function (DUF4364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.8e-05     0.047      40      71 ..      47      79 ..      38      83 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
                           DUF4364 40 lseLvesglieee.ekenktlykiTekGketle 71
                                      l+ Lv++gl+e++ +++ ++lyk+T +G++ l+
  gi|300712914|ref|YP_003738726.1| 47 LDTLVDKGLVEKSqQDRRTNLYKLTARGQRELS 79
                                      899*********9777999*********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 722.79
//
Query:       gi|300712915|ref|YP_003738727.1|  [L=280]
Description: hypothetical protein HacjB3_17968 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-43  148.3  24.6    3.1e-43  148.1  24.6    1.1  1  DsbD_2    Cytochrome C biogenesis protein transmembrane regio


Domain annotation for each model (and alignments):
>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1  24.6   1.7e-47   3.1e-43       2     198 ..      28     248 ..      27     249 .. 0.84

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 1.7e-47
                            DsbD_2   2 afllgLlgslhClgmCggivlalslskp..kra.....la....lllynlGRilsYallGalvgllgsvlqlagel. 66 
                                       +fl+gL+g++hC+gmCg++v++++ +++   r+     l+    ++l+nlGR++sYa++Ga++g++g++l  +  l 
  gi|300712915|ref|YP_003738727.1|  28 FFLIGLFGGAHCIGMCGPLVATYAERMEtnDRWsgaltLYemrqHALFNLGRTVSYACIGAVFGTAGALLYGTIGLa 104
                                       89**********************99963323333333114555*************************98886663 PP

                            DsbD_2  67 ...eglrallgvllgllllllglklllkkkllk......lerlgkllsrllkklakkl...kslasalllGllnGll 131
                                            +++++gvl+g+++l++gl  l + +  +         +g+l++r+ ++++ ++    +  ++l+lG+l+Gll
  gi|300712915|ref|YP_003738727.1| 105 gilGPFQGAVGVLAGAAILVMGLTRLAGYRQGAvegiiaGTGVGSLFARSYTAISTRIdrwVNGVGILGLGALHGLL 181
                                       443669*****************99965443332244334457777888777777777777999************* PP

                            DsbD_2 132 pCglvysalllalasgsaleGalvmlaFgLGTlpalllfglllgllskklrkkllrlagvllillgl 198
                                       pC+l+y+a+l+++a+gs+++G +++ ++gLGT+p+++l+g+++g +s++ r++++  +gvl+i lg+
  gi|300712915|ref|YP_003738727.1| 182 PCMLLYPAFLYVFAQGSPVYGLFALGTLGLGTVPSVFLYGTVIGSVSARQRQTVHYGLGVLFIGLGY 248
                                       ****************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2114.51
//
Query:       gi|300712916|ref|YP_003738728.1|  [L=811]
Description: transport ATPase 3 ( substrates copper/metal cation) [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-43  148.1   0.1      2e-43  148.1   0.1    2.7  4  E1-E2_ATPase   E1-E2 ATPase
    2.2e-30  106.5   3.1      4e-30  105.7   3.1    1.4  1  Hydrolase      haloacid dehalogenase-like hydrolase
    1.2e-09   38.5   0.0    5.5e-09   36.3   0.0    2.1  2  HMA            Heavy-metal-associated domain
      3e-05   23.9   0.0    5.1e-05   23.1   0.0    1.3  1  Hydrolase_3    haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.027   15.2   1.7      0.043   14.6   0.4    1.9  2  ATPase-cat_bd  Putative metal-binding domain of cation transp


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4       1.1   3.8e+03     123     152 ..     159     188 ..     139     209 .. 0.58
   2 ?   -2.2   0.6      0.72   2.6e+03     122     156 ..     231     261 ..     225     268 .. 0.48
   3 !  148.1   0.1   5.4e-47     2e-43       6     179 ..     293     467 ..     288     469 .. 0.92
   4 ?   -2.6   0.3      0.93   3.3e+03     151     175 ..     744     768 ..     730     774 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
                                       HHHHHHHHHHHHHS-STTTSSTTHHHHHHH CS
                      E1-E2_ATPase 123 vpvvlliallvflialllgkslaeallral 152
                                        ++ +li+ ++f++ ++lg  +   l+ + 
  gi|300712916|ref|YP_003738728.1| 159 LMMPVLIFYVLFIYPVYLGIYPESFLYGTT 188
                                       333445555555555555555543333333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.72
                                       HHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHH CS
                      E1-E2_ATPase 122 lvpvvlliallvflialllgkslaeallralallv 156
                                       ++++vl+++++ +++ l+ g+++ + +      +v
  gi|300712916|ref|YP_003738728.1| 231 IAIAVLAAYVYSMVTYLTGGRDPYFDVAV----MV 261
                                       44555555555555555555555422222....22 PP

  == domain 3  score: 148.1 bits;  conditional E-value: 5.4e-47
                                       EEEEE-TT..S-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-E CS
                      E1-E2_ATPase   6 takvirdg..teeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsge 80 
                                       +a+++ d+    e+i++++ +pGD +l+k+g+r+p+Dgri++g+a +de+++TGEs p +k+ gd v +G++ ++  
  gi|300712916|ref|YP_003738728.1| 293 EARRLDDDtdASETIEIDKCEPGDRLLVKPGERIPVDGRIIDGTAAIDEALITGESIPQRKSIGDDVLGGSILTDSA 369
                                       66777555225577************************************************************999 PP

                                       EEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHH CS
                      E1-E2_ATPase  81 akavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallva 157
                                       ++++V     +++++++++l+ + ks+ t +q+ +++++  +vp+vl++a l+++ +++lg+++++a++ ++++lv+
  gi|300712916|ref|YP_003738728.1| 370 IVIEVGPD-ATSTMDRLVELLWNVKSSATGVQRLVNRFAVLFVPFVLVLAGLTAASWFVLGNDPNTAVMAGVSVLVV 445
                                       98888765.56789*************************************************************** PP

                                       HS-TTHHHHHHHHHHHHHHHHH CS
                      E1-E2_ATPase 158 aiPcaLplavplalalgarrla 179
                                       ++Pc L++a+plala+++r + 
  gi|300712916|ref|YP_003738728.1| 446 SCPCSLGIATPLALAAATRDAT 467
                                       *****************99876 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.93
                                       HHHHHHHHS-TTHHHHHHHHHHHHH CS
                      E1-E2_ATPase 151 alallvaaiPcaLplavplalalga 175
                                       a +  ++a+P a++ +++  +a+ +
  gi|300712916|ref|YP_003738728.1| 744 AAGYNTIALPLAMAGVITPLIAAVM 768
                                       5566678999999888887766655 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   3.1   1.1e-33     4e-30       3     210 .]     487     695 ..     486     695 .. 0.92

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 1.1e-33
                                       EEEEESBTTTBCHHHHHHHHHHHH...CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE........H CS
                                       xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........x RF
                         Hydrolase   3 tvvfDkdGTLttgepsvedvivsa...alalaaaletgsehpigkalvaaakarsgaltgfatfigrg........a 68 
                                       +vvfDk+GTLttg+++++dv+       la+aaa e  s hpi++a+  aa   + ++++f + ++r         +
  gi|300712916|ref|YP_003738728.1| 487 VVVFDKTGTLTTGKMELTDVFGDDpdeVLAMAAAVERRSSHPIAAAIDDAAPPTTRSVSSFKR-ADRTvsaivddtR 562
                                       79*********************999999999999999***********************99.5555799999999 PP

                                       HHHTHHHHHHHH..HCHHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEE CS
                                       xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                         Hydrolase  69 yaigkpewltal..dippdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvllt 141
                                       + +g p  ++    +ip   +aa+ +a + g     +   + +++++t+ d+  +++  + +v  L +ag e+v+lt
  gi|300712916|ref|YP_003738728.1| 563 VVVGHPGSFDTDewTIPAAIEAAVADAYESGTHPTAVawAGAVRGIVTVRDT--PRENWERVVTDLADAGREIVVLT 637
                                       9999999888888*999999999999999998877776678***********..*********************** PP

                                       SSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                         Hydrolase 142 gdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                                       gd++++    an+            +++++a++ pe k+ +++ L++++  + m+GDg nDa+ala A+
  gi|300712916|ref|YP_003738728.1| 638 GDDERMTGTFANHPA----------IDHVFAGVRPESKEVIVQGLRERG-TTTMIGDGTNDAPALASAD 695
                                       *************88..........4666****************6555.8****************98 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.5e-12   5.5e-09       3      61 ..      72     130 ..      71     131 .. 0.96
   2 ?   -2.2   0.0       1.7   6.1e+03      30      57 ..     555     587 ..     542     590 .. 0.66

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.5e-12
                               HMA   3 rvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61 
                                       +++gmhC+ C++ +e   +e +g++++  ++at  v+V++d+++++ ++i  +++++gy
  gi|300712916|ref|YP_003738728.1|  72 SIDGMHCQTCEGFIELLAEEEEGIHEARASYATEMVQVVYDPDQIDRNTIATTLSQLGY 130
                                       699*****************************************87799*********9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
                               HMA  30 kvdlatktvtVeg....daes.tklrkiieaie 57 
                                       +  ++  +v+V +    d+++ t + +i +a+ 
  gi|300712916|ref|YP_003738728.1| 555 SAIVDDTRVVVGHpgsfDTDEwTIPAAIEAAVA 587
                                       555555555555577777777787788887775 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.4e-08   5.1e-05     206     251 ..     678     723 ..     673     727 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.4e-08
                                       EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHH CS
                       Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGV 251
                                       +  +GDg ND + L  a+lg+A+ +++e +++aAd v+ +   d+V
  gi|300712916|ref|YP_003738728.1| 678 TTMIGDGTNDAPALASADLGIAVSSGTELAIEAADVVVLDDRLDAV 723
                                       678**********************************998887877 PP

>> ATPase-cat_bd  Putative metal-binding domain of cation transport ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.4   1.2e-05     0.043       2      40 ..       4      38 ..       3      44 .. 0.80
   2 ?   -1.7   0.0       1.4   4.9e+03      26      41 ..      76      91 ..      66     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
                     ATPase-cat_bd  2 CyHCglpveesaklkaeiegeerefCCkGCqavaqlive 40
                                      C+ C+lpve+      +  + + +fCC+GC  va+l+ +
  gi|300712916|ref|YP_003738728.1|  4 CTLCELPVEDP----ITSTEVDGDFCCQGCLEVARLVDD 38
                                      99999999885....455566779**********98765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
                     ATPase-cat_bd 26 fCCkGCqavaqlivea 41
                                      + C+ C++ ++l+ e+
  gi|300712916|ref|YP_003738728.1| 76 MHCQTCEGFIELLAEE 91
                                      6799***999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 5163.09
//
Query:       gi|300712917|ref|YP_003738729.1|  [L=41]
Description: hypothetical protein HacjB3_17978 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 329.64
//
Query:       gi|300712918|ref|YP_003738730.1|  [L=336]
Description: hypothetical protein HacjB3_17983 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
          1    9.4   4.7         15    5.6   0.2    2.4  2  Laminin_II  Laminin Domain II


Domain annotation for each model (and alignments):
>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2   0.00084        15       7      56 ..     164     213 ..     161     226 .. 0.85
   2 ?    4.9   0.8    0.0014        25       9      52 ..     268     312 ..     257     331 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00084
                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                        Laminin_II   7 eanetakevleqlaplsqnlentkeklseinrsveetnekvkdankaird 56 
                                       + n t + vle   ++++ le++ ++l++ n+s++  +  +++a+ +  d
  gi|300712918|ref|YP_003738730.1| 164 DLNGTETYVLELDVDMDAYLEEMTSELNTTNNSMDANDTAMNSATSGSLD 213
                                       67888999*************************98888888888776655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0014
                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX CS
                        Laminin_II   9 netakevleqlaplsqnlentkeklseinrsveetnekvk.dank 52 
                                         ++++ ++  +p++ +l+++ e++++++++++e +  +  + + 
  gi|300712918|ref|YP_003738730.1| 268 TTQTTHYEAYNEPVDIDLPEEAENAQNLDEQLAELETGLAeNNSS 312
                                       344556678889*******************99998776623333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1164  (0.0649228); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2370.31
//
Query:       gi|300712919|ref|YP_003738731.1|  [L=166]
Description: hypothetical protein HacjB3_17988 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1211.77
//
Query:       gi|300712920|ref|YP_003738732.1|  [L=95]
Description: hypothetical protein HacjB3_17993 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 728.22
//
Query:       gi|300712921|ref|YP_003738733.1|  [L=82]
Description: hypothetical protein HacjB3_17998 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11    9.9   0.0       0.12    9.8   0.0    1.0  1  FancD2    Fanconi anaemia protein FancD2 nuclease


Domain annotation for each model (and alignments):
>> FancD2  Fanconi anaemia protein FancD2 nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   6.7e-06      0.12     154     213 ..      15      75 ..      11      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.7e-06
                                       HHHHHHHHHS----TT---HH.HHHHGGGTT-S--SSHHHHHHHHHHHHHHS-TTTHHHHH CS
                            FancD2 154 lfeklPeflfesvgsdglnlp.rliinqlkWldrivdskdltsklmqlisvaPveiqrdii 213
                                       l++++ + l es+ s  ++ + ++  + +k ldr +d  d+t +l  l+s++ ve+  +i 
  gi|300712921|ref|YP_003738733.1|  15 LYDRVGDLLNESTRSGAIDASaQFTEEMMKNLDRAMDHPDMTPELAALLSMSQVELEYEIQ 75 
                                       78999999999999999987614555678**************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 661.41
//
Query:       gi|300712922|ref|YP_003738734.1|  [L=88]
Description: hypothetical protein HacjB3_18003 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-07   31.0   0.1    2.6e-07   30.6   0.1    1.2  1  HTH_20         Helix-turn-helix domain
    6.8e-06   25.9   0.0    9.5e-06   25.4   0.0    1.1  1  MarR_2         MarR family
    2.5e-05   23.7   0.0    3.6e-05   23.2   0.0    1.2  1  HTH_24         Winged helix-turn-helix DNA-binding
    0.00012   22.0   0.0    0.00016   21.6   0.0    1.2  1  HTH_11         HTH domain
    0.00048   19.9   0.0    0.00063   19.6   0.0    1.2  1  TrmB           Sugar-specific transcriptional regulator TrmB
    0.00058   19.6   0.8    0.00086   19.1   0.8    1.3  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
     0.0025   17.6   0.0     0.0037   17.0   0.0    1.3  1  HTH_23         Homeodomain-like domain
      0.007   15.9   0.0       0.01   15.4   0.0    1.3  1  HTH_CodY       CodY helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.5   0.2      0.016   15.0   0.2    1.2  1  HTH_IclR       IclR helix-turn-helix domain
      0.014   15.3   0.0       0.02   14.7   0.0    1.2  1  HTH_5          Bacterial regulatory protein, arsR family
      0.024   14.6   0.0      0.027   14.4   0.0    1.2  1  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.032   14.1   0.0      0.042   13.7   0.0    1.1  1  HxlR           HxlR-like helix-turn-helix
       0.05   13.6   0.0      0.062   13.3   0.0    1.2  1  HTH_29         Winged helix-turn helix
      0.055   13.6   0.1      0.072   13.3   0.1    1.2  1  AbiEi_4        Transcriptional regulator, AbiEi antitoxin
      0.055   13.2   0.0      0.076   12.8   0.0    1.2  1  HTH_DeoR       DeoR-like helix-turn-helix domain
      0.058   13.4   0.0      0.074   13.0   0.0    1.2  1  Dimerisation2  Dimerisation domain
       0.07   13.0   0.0       0.31   10.9   0.0    1.9  1  Phage_AlpA     Prophage CP4-57 regulatory protein (AlpA)
      0.075   13.1   0.0       0.21   11.7   0.0    1.7  2  HTH_7          Helix-turn-helix domain of resolvase
      0.075   13.0   0.0        0.1   12.5   0.0    1.3  1  MarR           MarR family
      0.084   12.1   0.0      0.096   12.0   0.0    1.1  1  EAP30          EAP30/Vps36 family
        0.1   12.4   0.0       0.15   11.9   0.0    1.2  1  HTH_30         PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   3.1e-10   2.6e-07      14      60 ..      19      64 ..      18      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.1e-10
                                      HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
                            HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                                      r+l+aL +++ l+a ++a+ l++s++ ++++Lr L e g ve  + g
  gi|300712922|ref|YP_003738734.1| 19 RVLDAL-GEGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEKHTFG 64
                                      79****.*********************************9998876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.1e-08   9.5e-06       7      53 ..      17      60 ..      13      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.1e-08
                                      HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
                            MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                                      + rvL aLg +    l+++++a++lg s++a+ r+l+ L + G ve+
  gi|300712922|ref|YP_003738734.1| 17 DERVLDALGEGT---LSAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      569******999...9***************************9997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.2e-08   3.6e-05       4      48 .]      16      59 ..      15      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.2e-08
                            HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                                      td ++L +L + + +s +++A++lg S+++  rrl++L e+G ++
  gi|300712922|ref|YP_003738734.1| 16 TDERVLDALGE-GTLSAQQVADKLGCSRQAADRRLRNLLEDGTVE 59
                                      78999999999.******************************875 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.8e-07   0.00016      13      43 ..      26      56 ..      19      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.8e-07
                            HTH_11 13 rgpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                                      +g++s+++ A++L++Sr++  r+++ L e g
  gi|300712922|ref|YP_003738734.1| 26 EGTLSAQQVADKLGCSRQAADRRLRNLLEDG 56
                                      578************************9988 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.4e-07   0.00063      19      56 ..      25      62 ..      16      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.4e-07
                                      HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
                              TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVerek 56
                                       +g ++a+++a +lg +r+ + + Lr+L++ G Ve+  
  gi|300712922|ref|YP_003738734.1| 25 GEGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEKHT 62
                                      57999******************************976 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.8     1e-06   0.00086       4      41 ..      16      52 ..      15      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1e-06
                     HTH_AsnC-type  4 iDrkILeaLqedaRisyaeLAervGlSestvlrRvrrL 41
                                      +D + L+aL   + +s +++A+++G+S++++ rR+r L
  gi|300712922|ref|YP_003738734.1| 16 TDERVLDALG-EGTLSAQQVADKLGCSRQAADRRLRNL 52
                                      6888888888.599*********************988 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.3e-06    0.0037      18      45 ..      29      56 ..      19      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.3e-06
                            HTH_23 18 lsvreIAreLgvsrrTvyrwlkryreeG 45
                                      ls +++A++Lg+sr+  +r l+   e+G
  gi|300712922|ref|YP_003738734.1| 29 LSAQQVADKLGCSRQAADRRLRNLLEDG 56
                                      6889**************9999887777 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-05      0.01       2      40 ..      26      64 ..      25      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
                          HTH_CodY  2 eGrLtaskiaDriGitrsvivnaLrkLesaGiiesrsLG 40
                                      eG L a ++aD++G  r      Lr L   G +e    G
  gi|300712922|ref|YP_003738734.1| 26 EGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEKHTFG 64
                                      9**************************999*99988877 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.2   1.9e-05     0.016       7      50 ..      19      60 ..      19      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
                                      HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
                          HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                                      ++Ldal+e++   + +++A+++g ++ ++ R L+ L e G ve+
  gi|300712922|ref|YP_003738734.1| 19 RVLDALGEGTL--SAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      58999999886..6***************************997 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.4e-05      0.02       6      47 .]      19      60 ..      19      60 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
                                      HHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                             HTH_5  6 kILklLaegelcvcelaeelglsqstvShHLkkLreaGLVek 47
                                      ++L +L eg l++ + a++lg s+ + ++ L+ L e G Vek
  gi|300712922|ref|YP_003738734.1| 19 RVLDALGEGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      5899**********************************9986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.2e-05     0.027      21      53 ..      28      60 ..      10      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.2e-05
                                      EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
                         HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisr 53
                                       l+ ++ A+ lG +r+   r l+ L ++g +++
  gi|300712922|ref|YP_003738734.1| 28 TLSAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      5899*************************9995 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     5e-05     0.042      10      68 ..      20      75 ..      16      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5e-05
                                      HHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TC CS
                              HxlR 10 ilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltek 68
                                      +l +l +g+   ++++++l ++s++   +rLr+L +dg +e+++    P  v +slt++
  gi|300712922|ref|YP_003738734.1| 20 VLDALGEGTLSAQQVADKL-GCSRQAADRRLRNLLEDGTVEKHTF--GPRSVAWSLTDE 75
                                      788999*************.9*******************99875..688899999985 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.2e-05     0.062       4      40 ..      20      56 ..      19      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.2e-05
                            HTH_29  4 allllaeGvstvsqiAkllglsrrtvyrwlkrfeegG 40
                                      +l +l eG  + +q+A  lg+sr+  +r l+   e+G
  gi|300712922|ref|YP_003738734.1| 20 VLDALGEGTLSAQQVADKLGCSRQAADRRLRNLLEDG 56
                                      7888999999****************88766666665 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   8.4e-05     0.072      11      39 ..      26      59 ..      18      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.4e-05
                           AbiEi_4 11 vGlfttrelea.aGispsa....lrrLvrkGwLv 39
                                       G+++ ++++  +G s++a    lr+L++ G ++
  gi|300712922|ref|YP_003738734.1| 26 EGTLSAQQVADkLGCSRQAadrrLRNLLEDGTVE 59
                                      4999*****999*****99899999999999877 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.9e-05     0.076      12      47 ..      26      61 ..      20      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.9e-05
                          HTH_DeoR 12 qgklsveelvellgvSeaTiRRDLneLeeqglltRt 47
                                      +g+ls +++++ lg S + + R L++L e+g+++++
  gi|300712922|ref|YP_003738734.1| 26 EGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEKH 61
                                      69*******************************998 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.7e-05     0.074      22      54 ..      19      50 ..      14      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.7e-05
                     Dimerisation2 22 gvFdlLkeeeplsaeevaeelgasvkGterLld 54
                                      +v d+L e + lsa++va++lg+s ++ +r l+
  gi|300712922|ref|YP_003738734.1| 19 RVLDALGE-GTLSAQQVADKLGCSRQAADRRLR 50
                                      68899999.*****************9998776 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00037      0.31       3      44 ..      28      72 ..      26      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
                        Phage_AlpA  3 ilrlreVeqktglsrstiYrlik....dgeFPkkvkLGvrsVgWle 44
                                      +l+ ++V+ k+g sr   +r ++    dg+   k   G+rsV+W  
  gi|300712922|ref|YP_003738734.1| 28 TLSAQQVADKLGCSRQAADRRLRnlleDGTV-EKHTFGPRSVAWSL 72
                                      6889999999999999999988888866665.67789*******76 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.21      13      36 ..      19      43 ..      13      44 .. 0.88
   2 ?   -1.7   0.0       3.8   3.2e+03      13      22 ..      48      57 ..      47      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
                                      GGGSSTTTT.--STTTSSSS---SS CS
                             HTH_7 13 rvvkLleeG.isiskIAkevnisRs 36
                                      rv+  l eG  s++++A+ +++sR+
  gi|300712922|ref|YP_003738734.1| 19 RVLDALGEGtLSAQQVADKLGCSRQ 43
                                      67777899999*************8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.8
                                      GGGSSTTTT- CS
                             HTH_7 13 rvvkLleeGi 22
                                      r++ Lle+G+
  gi|300712922|ref|YP_003738734.1| 48 RLRNLLEDGT 57
                                      6788999995 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012       0.1      16      49 ..      27      60 ..      19      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
                                      TTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                              MarR 16 gplsvseLakklgvskstvtrvldrLekkGlieR 49
                                      g ls ++ a+klg+s+ ++ r l+ L ++G +e+
  gi|300712922|ref|YP_003738734.1| 27 GTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      789999************************9986 PP

>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011     0.096     190     232 ..      20      58 ..       2      59 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                             EAP30 190 llaekssgggvtaselaeeeenlgwsvarakeaLeelereGll 232
                                       +l++ ++ g ++a+++a++   lg s++ a++ L++l+++G++
  gi|300712922|ref|YP_003738734.1|  20 VLDALGE-GTLSAQQVADK---LGCSRQAADRRLRNLLEDGTV 58 
                                       4444454.589*****777...*******************86 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.15       5      35 ..      21      51 ..      19      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                                      HHHHHHTTT-HHHHHHHHTS-HHHHHHHHHH CS
                            HTH_30  5 LraylenggnisatAkaLhvHrnTlryRLrr 35
                                      L+a  e   +++++A++L+++r+    RLr 
  gi|300712922|ref|YP_003738734.1| 21 LDALGEGTLSAQQVADKLGCSRQAADRRLRN 51
                                      56666667899******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 653.33
//
Query:       gi|300712923|ref|YP_003738735.1|  [L=139]
Description: hypothetical protein HacjB3_18008 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   32.7   0.0    1.9e-07   31.9   0.0    1.5  1  Fic       Fic/DOC family


Domain annotation for each model (and alignments):
>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     1e-11   1.9e-07      40      96 ..      37      87 ..       8      88 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1e-11
                                      -SCCCHHHHHHHHHHHHCHHT-S-HHHHHHHHHHHHHHH--SSS-HHHHHHHHHHHH CS
                               Fic 40 appeevpaeleelleylnelekeeplekaaalhyefekiHPFaDGNgRtarlllnll 96
                                       p  e+++  ++  ey +      ++++aa+l+ ++++ H F DGN+Rta+ ++  +
  gi|300712923|ref|YP_003738735.1| 37 SPRLELRPHTRKAAEYDD------VYIRAAFLLRKVVTAHVFEDGNKRTAWNVATSY 87
                                      333366666677777777......**************************9887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 1003.05
//
Query:       gi|300712924|ref|YP_003738736.1|  [L=41]
Description: hypothetical protein HacjB3_18013 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 308.47
//
Query:       gi|300712925|ref|YP_003738737.1|  [L=35]
Description: hypothetical protein HacjB3_18018 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        92  (0.00513135); expected 358.6 (0.02)
Passed bias filter:                       86  (0.0047967); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 265.51
//
Query:       gi|300712926|ref|YP_003738738.1|  [L=547]
Description: hypothetical protein HacjB3_18023 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0031   17.3   0.0     0.0088   15.8   0.0    1.7  1  HTH_23    Homeodomain-like domain
     0.0051   16.7   0.0      0.012   15.6   0.0    1.5  1  HTH_11    HTH domain
     0.0059   16.6   0.3      0.017   15.1   0.1    2.0  2  HTH_29    Winged helix-turn helix
      0.006   16.4   0.0      0.015   15.2   0.0    1.6  1  TrmB      Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.013   15.6   0.1      0.039   14.1   0.1    1.8  1  HTH_28    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-06    0.0088      23      41 ..     380     398 ..     368     408 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.5e-06
                            HTH_23  23 IAreLgvsrrTvyrwlkry 41 
                                        A++ g+srrTvyr++ r 
  gi|300712926|ref|YP_003738738.1| 380 LAEAIGRSRRTVYRIVDRL 398
                                       699*************994 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.2e-06     0.012      20      43 ..     379     402 ..     370     411 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.2e-06
                            HTH_11  20 eLAeeLnvSrrtvrrdIkaLeelg 43 
                                        LAe +++Srrtv+r +++L++l+
  gi|300712926|ref|YP_003738738.1| 379 SLAEAIGRSRRTVYRIVDRLSDLL 402
                                       79******************9886 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.8e-06     0.017       4      36 ..     364     398 ..     362     401 .. 0.81
   2 ?   -3.3   0.0       2.7   9.5e+03      30      41 ..     425     436 ..     422     440 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.8e-06
                            HTH_29   4 allllaeGvs..tvsqiAkllglsrrtvyrwlkrf 36 
                                       al+ +a+G+    v  +A++ g srrtvyr+++r 
  gi|300712926|ref|YP_003738738.1| 364 ALQVMADGGQvqDVTSLAEAIGRSRRTVYRIVDRL 398
                                       5666666666667999****************996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.7
                            HTH_29  30 yrwlkrfeegGl 41 
                                       ++++++fe++G 
  gi|300712926|ref|YP_003738738.1| 425 RHAREAFENDGK 436
                                       778999999994 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.2e-06     0.015       5      48 ..     356     400 ..     354     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.2e-06
                                       HHHHHCCCHCHHHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHH CS
                              TrmB   5 GLseyEakvYlaLl.klgpatadeiaeelgvprskvYevLrsLed 48 
                                       +L+  +a++ +++    +  +++ +ae++g++r +vY+++ +L+d
  gi|300712926|ref|YP_003738738.1| 356 DLNNSDAEALQVMAdGGQVQDVTSLAEAIGRSRRTVYRIVDRLSD 400
                                       5788888998888844445689********************986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.1e-05     0.039       4      35 ..     363     397 ..     362     398 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                            HTH_28   4 eiikllaaGh...svreaArelgisrrtvyrWikr 35 
                                       e+++ +a+G+    v+ +A++ g srrtvyr + r
  gi|300712926|ref|YP_003738738.1| 363 EALQVMADGGqvqDVTSLAEAIGRSRRTVYRIVDR 397
                                       66777777754578888**************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3992.18
//
Query:       gi|300712927|ref|YP_003738739.1|  [L=79]
Description: hypothetical protein HacjB3_18028 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-15   56.0   0.3    6.3e-15   55.7   0.3    1.1  1  VAPB_antitox    Putative antitoxin
  ------ inclusion threshold ------
       0.12   12.4   0.5        7.5    6.7   0.1    2.2  2  Unstab_antitox  Putative addiction module component
       0.15   11.8   0.3       0.16   11.7   0.3    1.1  1  Trp_oprn_chp    Tryptophan-associated transmembrane protein (


Domain annotation for each model (and alignments):
>> VAPB_antitox  Putative antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.3   1.1e-18   6.3e-15       1      67 [.       6      68 ..       6      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.1e-18
                      VAPB_antitox  1 KtIsIsdevYekLkklKregeSFsdvIerLlekkkkgkkkellelfgilseeea.deiekaskelrke 67
                                      Kt +I++++Ye+Lk+ Kr +eSFsdv++rL +  +++   + ++++g +++ +a +  ++++++l +e
  gi|300712927|ref|YP_003738739.1|  6 KTLTITEDAYERLKAHKRGDESFSDVVNRLSK--SRD---NPKKARGLWDDIDAgQDHKEKHQQLGEE 68
                                      89****************************43..333...4799*****9999999888888877665 PP

>> Unstab_antitox  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0076        45      34      50 ..      14      30 ..      11      32 .. 0.84
   2 ?    6.7   0.1    0.0012       7.5      12      30 ..      46      65 ..      44      76 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0076
                    Unstab_antitox 34 lerRlaeyeaGkvkaip 50
                                      + +Rl+++++G +++++
  gi|300712927|ref|YP_003738739.1| 14 AYERLKAHKRGDESFSD 30
                                      558********999876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
                    Unstab_antitox 12 edLwdSLde..eadpelpaaw 30
                                        Lwd++d+  ++ +   ++ 
  gi|300712927|ref|YP_003738739.1| 46 RGLWDDIDAgqDHKE-KHQQL 65
                                      569******744444.44444 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   2.7e-05      0.16     163     178 ..      28      57 ..       3      58 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
                      Trp_oprn_chp 163 e..............dserdlWdaLdrGeD 178
                                                      ++ r lWd +d+G+D
  gi|300712927|ref|YP_003738739.1|  28 FsdvvnrlsksrdnpKKARGLWDDIDAGQD 57 
                                       155666666666677999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 565.34
//
Query:       gi|300712928|ref|YP_003738740.1|  [L=51]
Description: PilT protein domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0002   21.9   0.0     0.0002   21.9   0.0    1.1  1  PIN       PIN domain
      0.002   17.9   0.0     0.0022   17.7   0.0    1.2  1  DUF5615   Domain of unknown function (DUF5615)
  ------ inclusion threshold ------
      0.078   12.4   0.0      0.094   12.2   0.0    1.1  1  XPG_I_2   XPG domain containing


Domain annotation for each model (and alignments):
>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.3e-08    0.0002      86     121 ..       9      43 ..       1      44 [. 0.81

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.3e-08
                                       HHHHSBHHHHHHHHHHHHHT-EEE.ESSTHHHHHHH CS
                               PIN  86 lkygllpnDaliaAtAkehgikliatfDedfrrvak 121
                                           +++ D+lia   +e g++++ t+D+df+r+++
  gi|300712928|ref|YP_003738740.1|   9 QGTPINAVDMLIAGIVREAGATIV-TRDSDFNRIEG 43 
                                       3344899**************888.********975 PP

>> DUF5615  Domain of unknown function (DUF5615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.7e-07    0.0022      29      61 ..       8      41 ..       3      49 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.7e-07
                           DUF5615 29 elgle.gasDeeileyAkeedriivTkDkDFgel 61
                                      ++g + +a D  i  + +e +++ivT+D+DF+++
  gi|300712928|ref|YP_003738740.1|  8 DQGTPiNAVDMLIAGIVREAGATIVTRDSDFNRI 41
                                      55666468899999999**************987 PP

>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.6e-05     0.094      31      52 ..      17      38 ..      13      39 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
                           XPG_I_2 31 DkfcAvlArklgcaVLTsDSDL 52
                                      D  +A ++r++g+++ T DSD+
  gi|300712928|ref|YP_003738740.1| 17 DMLIAGIVREAGATIVTRDSDF 38
                                      7889*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 405.02
//
Query:       gi|300712929|ref|YP_003738741.1|  [L=67]
Description: hypothetical protein HacjB3_18038 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-07   30.1   0.6    1.2e-06   28.8   0.6    1.7  1  DUF4177   Domain of unknown function (DUF4177)


Domain annotation for each model (and alignments):
>> DUF4177  Domain of unknown function (DUF4177)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.6   6.4e-11   1.2e-06       1      44 [.       7      44 ..       7      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 6.4e-11
                           DUF4177  1 YEYkvvevkegglgngkieeeeleeyqeilnelAkeGWrlvsii 44
                                      YEYk ++  +g lg   i++e++e+    +n+lAk+GW+l  +i
  gi|300712929|ref|YP_003738741.1|  7 YEYKMIQPSTGLLG---IKTENTEK---KVNRLAKDGWELDEVI 44
                                      9******7777777...66667788...************8866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 521.15
//
Query:       gi|300712930|ref|YP_003738742.1|  [L=61]
Description: hypothetical protein HacjB3_18043 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.5    7.5   5.3         12    6.1   5.3    1.8  1  PEP-CTERM  PEP-CTERM motif


Domain annotation for each model (and alignments):
>> PEP-CTERM  PEP-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.3   0.00068        12       6      18 ..      16      28 ..      16      37 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00068
                         PEP-CTERM  6 sTllLlGlGllGl 18
                                      +TllL+G+G++ l
  gi|300712930|ref|YP_003738742.1| 16 ATLLLFGFGVVFL 28
                                      79*******7663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 451.37
//
Query:       gi|300712931|ref|YP_003738743.1|  [L=56]
Description: hypothetical protein HacjB3_18048 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.5    8.0   9.1        7.4    6.5   1.3    2.2  2  MtrG      Tetrahydromethanopterin S-methyltransferase, subuni
        2.8    8.4  14.2       0.96    9.9   4.8    2.1  2  Romo1     Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> MtrG  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.3   0.00083       7.4      45      62 ..      16      33 ..       5      35 .. 0.86
   2 ?    6.5   1.4   0.00085       7.6      37      55 ..      37      55 ..      34      56 .] 0.73

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00083
                              MtrG 45 iGilYGlviGliillvyi 62
                                      +Gi++G ++G+++ lv+ 
  gi|300712931|ref|YP_003738743.1| 16 LGIAFGPLMGVVLGLVLN 33
                                      799999999999998875 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00085
                              MtrG 37 iGkkvGRdiGilYGlviGl 55
                                      iG  +G  +G ++G+v Gl
  gi|300712931|ref|YP_003738743.1| 37 IGIAIGMSLGTIFGVVWGL 55
                                      5667788888888888876 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.6     0.003        27       5      23 ..      13      31 ..       8      34 .. 0.61
   2 ?    9.9   4.8   0.00011      0.96       5      26 ..      34      55 ..      31      56 .] 0.68

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.003
                             Romo1  5 kikmGalmGaaVGlaiGll 23
                                      k+  G++ G + G+++Gl+
  gi|300712931|ref|YP_003738743.1| 13 KMGLGIAFGPLMGVVLGLV 31
                                      4555556666666666655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00011
                             Romo1  5 kikmGalmGaaVGlaiGllfGt 26
                                       i  G+++G+ +G ++G+++G+
  gi|300712931|ref|YP_003738743.1| 34 DIGIGIAIGMSLGTIFGVVWGL 55
                                      5667777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 390.52
//
Query:       gi|300712932|ref|YP_003738744.1|  [L=139]
Description: hypothetical protein HacjB3_18053 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   12.2   4.3       0.07   12.0   4.3    1.0  1  EcsB      Bacterial ABC transporter protein EcsB
        0.4   10.5   5.2       0.54   10.0   4.1    1.8  1  IncD      Inclusion membrane protein D


Domain annotation for each model (and alignments):
>> EcsB  Bacterial ABC transporter protein EcsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.3   7.8e-06      0.07     102     209 ..      22     130 ..      13     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.8e-06
                              EcsB 102 slllqll.llllvllillPlllettglsiaelllllllllllkl.lnlllkweelrlqgkkkrridrlirlllnall 176
                                        +l +++ + ++vl+i+++ +++  +l+ ++  +ll++++++ + + ll+  + l + g+++ +++ ++ ++ +a+ 
  gi|300712932|ref|YP_003738744.1|  22 KILAAIFgVAAFVLAIAALEIATNPSLTDGTTASLLVVAFVFVVgVGLLVVAAGLWI-GRSWAWTWGFVLYTGAAIS 97 
                                       555555414455666666667788888888888888888887777999999999875.558999999********** PP

                              EcsB 177 lylllalapllalllilllllvlllllkrkkkk 209
                                         +++ ++p  ++ll +++ +++ ++l+ k+++
  gi|300712932|ref|YP_003738744.1|  98 SLIAVVQTPEPVTLLGVVVPAFVAVYLYSKREQ 130
                                       *********999999999999999999998876 PP

>> IncD  Inclusion membrane protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.1     6e-05      0.54      14      60 ..      33      79 ..      21      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6e-05
                              IncD 14 vvdriallercldpsnslptakrlvavavatilavallvvagllfsg 60
                                       v  ia le + +ps +  t+  l+ va   ++ v llvva  l+ g
  gi|300712932|ref|YP_003738744.1| 33 FVLAIAALEIATNPSLTDGTTASLLVVAFVFVVGVGLLVVAAGLWIG 79
                                      57789***********************************9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1029.31
//
Query:       gi|300712933|ref|YP_003738745.1|  [L=194]
Description: hypothetical protein HacjB3_18058 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1401.51
//
Query:       gi|300712934|ref|YP_003738746.1|  [L=77]
Description: hypothetical protein HacjB3_18063 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 609.88
//
Query:       gi|300712935|ref|YP_003738747.1|  [L=88]
Description: hypothetical protein HacjB3_18068 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.013   15.4   0.1      0.015   15.2   0.1    1.1  1  LemA            LemA family
      0.025   15.2   0.0         10    6.8   0.0    2.0  2  Cytochrom_B562  Cytochrome b562


Domain annotation for each model (and alignments):
>> LemA  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   1.7e-06     0.015      52      96 ..      43      87 ..      20      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-06
                              LemA 52 ekaeaenqlssalsrllavaEnYPdLkanenfleLqeelegtEnr 96
                                      + ae+e+  ++ +++l     +Y +Lk ++ ++eL e++e++E+r
  gi|300712935|ref|YP_003738747.1| 43 RDAENEKVRQGWIRQLAYACGQYRQLKKDQDLEELAERVEQLEER 87
                                      3455666778899******************************86 PP

>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0013        11      43      86 ..       5      48 ..       2      57 .. 0.87
   2 ?    6.8   0.0    0.0012        10      12      34 ..      64      86 ..      62      88 .] 0.92

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0013
                    Cytochrom_B562 43 tpsklekdseeqkdYqeGldklidqldkaealakagkleeakaa 86
                                       p+++e d ++  d  e ++ l d + +a+++++ag + +a+++
  gi|300712935|ref|YP_003738747.1|  5 SPPTPETDGPDIPDRAEVISLLEDGISEAHRKVTAGRVRDAENE 48
                                      5677888999999999999********************99765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0012
                    Cytochrom_B562 12 alkqvakaddaeelkkalkelra 34
                                      +++q++k +d eel++ +++l++
  gi|300712935|ref|YP_003738747.1| 64 QYRQLKKDQDLEELAERVEQLEE 86
                                      799*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 660.72
//
Query:       gi|300712936|ref|YP_003738748.1|  [L=54]
Description: hypothetical protein HacjB3_18073 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       142  (0.00792013); expected 358.6 (0.02)
Passed bias filter:                      126  (0.00702772); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 411.07
//
Query:       gi|300712937|ref|YP_003738749.1|  [L=61]
Description: hypothetical protein HacjB3_18078 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 462.73
//
Query:       gi|300712938|ref|YP_003738750.1|  [L=80]
Description: hypothetical protein HacjB3_18083 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 559.83
//
Query:       gi|300712939|ref|YP_003738751.1|  [L=128]
Description: hypothetical protein HacjB3_18088 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.06   13.3   0.6       0.21   11.6   0.6    1.9  2  DUF2388   Protein of unknown function (DUF2388)


Domain annotation for each model (and alignments):
>> DUF2388  Protein of unknown function (DUF2388)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.22     4e+03      55      68 ..       3      16 ..       2      17 .. 0.80
   2 ?   11.6   0.6   1.2e-05      0.21      15      51 ..      63     100 ..      55     110 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.22
                           DUF2388 55 pelqasDleLAeaI 68
                                      p+l+ sD+ L + I
  gi|300712939|ref|YP_003738751.1|  3 PDLSESDRALVRGI 16
                                      78889999998777 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.2e-05
                           DUF2388  15 skddklvlaArdDAasFVASdGairGarLEaaLq.elR 51 
                                       ++dd    aA   A  +VA +G+i+  +LE aL+ ++R
  gi|300712939|ref|YP_003738751.1|  63 LRDDADAEAALQHAREMVAYAGEIQDDELEMALNgSIR 100
                                       56777777888888889999999999999999873455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 920.50
//
Query:       gi|300712940|ref|YP_003738752.1|  [L=67]
Description: hypothetical protein HacjB3_18093 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.065   13.1   0.3        0.1   12.5   0.3    1.2  1  Pox_A_type_inc  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   5.6e-06       0.1       8      20 ..      44      56 ..      42      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-06
                    Pox_A_type_inc  8 sRIsDLErqLseC 20
                                       R +DL+rqL+ C
  gi|300712940|ref|YP_003738752.1| 44 GRLRDLDRQLTNC 56
                                      588*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 500.56
//
Query:       gi|300712941|ref|YP_003738753.1|  [L=156]
Description: hypothetical protein HacjB3_18098 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.4    9.6  10.7         31    5.3   8.5    2.3  2  KfrA_N    Plasmid replication region DNA-binding N-term


Domain annotation for each model (and alignments):
>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0035        63      11      30 ..      20      45 ..      18      49 .. 0.87
   2 ?    5.3   8.5    0.0017        31      49     106 ..      80     142 ..      66     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0035
                            KfrA_N 11 allaeGerp......TveavrerlGg 30
                                      ++ ++Ge p      +v+a+re+lG+
  gi|300712941|ref|YP_003738753.1| 20 RMKDRGEDPvlvseqSVDAIREVLGT 45
                                      677889999999999*********97 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0017
                            KfrA_N  49 aalaaraa.pelPealaeal....laalwqaaleeaeeelaaaraelqaaraaleaeraeaea 106
                                       +al+++++  + + +l e      +++l ++   +a+e+l++a++   +a + +ea+r+ea+ 
  gi|300712941|ref|YP_003738753.1|  80 TALSQQPEtGGASPELLEDNdegsVEDLTAEERNTAREKLESAQRMETRAPQYAEAQRQEAAD 142
                                       3334444454444444444458999**********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1179.83
//
Query:       gi|300712942|ref|YP_003738754.1|  [L=155]
Description: hypothetical protein HacjB3_18103 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.7   0.8       0.02   15.1   0.8    1.3  1  CREPT     Cell-cycle alteration and expression-elevated prote
      0.024   15.1   1.6       0.05   14.1   1.4    1.7  1  KELK      KELK-motif containing domain of MRCK Ser/Thr protei
       0.17   11.9   0.4       0.23   11.4   0.4    1.3  1  HisK_N    Histidine kinase N terminal
       0.22   10.4   0.2       0.27   10.1   0.2    1.0  1  Not1      CCR4-Not complex component, Not1


Domain annotation for each model (and alignments):
>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.8   4.4e-06      0.02      42     110 ..      12      82 ..       2     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.4e-06
                             CREPT  42 dkeeaekllkqveealellaeYnkrLeaeleeRkklakmledfleaqk..ellakaeekleelkeklekvk 110
                                       +++e+++l ++ ++a e l+ Y+ +L +   +R++l +  +++ +  +  +l+a+    lee+ e ++ ++
  gi|300712942|ref|YP_003738754.1|  12 SESEKNHLKSEANDAGETLSSYVYKLMQAERQRQNLDQSATELSAEERieALIAEGTDALEEIAEDIRDMN 82 
                                       788999*********************************99987665422678888888888877766655 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.4   1.1e-05      0.05      11      55 ..      11      55 ..       5      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                              KELK 11 llkqEkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevn 55
                                      + ++Ek+ l+ e ++a E l s  + L+ a  qr+   q  +e++
  gi|300712942|ref|YP_003738754.1| 11 VSESEKNHLKSEANDAGETLSSYVYKLMQAERQRQNLDQSATELS 55
                                      6789*******************************9999988875 PP

>> HisK_N  Histidine kinase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   5.2e-05      0.23      26      75 ..      14      64 ..       6      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.2e-05
                                      -TT-TTHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHH.HHHHHHHT- CS
                            HisK_N 26 sdkDpykeevkeNgealfelviellkeeiseedlkelaeki.akeRveanv 75
                                      s+k + k+e +  ge+l + v +l++ e + ++l + a+ + a+eR+ea +
  gi|300712942|ref|YP_003738754.1| 14 SEKNHLKSEANDAGETLSSYVYKLMQAERQRQNLDQSATELsAEERIEALI 64
                                      4567788999999*********************99998875899*99965 PP

>> Not1  CCR4-Not complex component, Not1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2     6e-05      0.27     193     288 ..      27     124 ..       4     129 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6e-05
                              Not1 193 sesllaeilekleleekeketg...ekikvnvklinalVlyvgieaieeakkksskavfstkssevallskLikeld 266
                                        e+l + +++ ++ e++++ +    ++     + i+al+   g+ a+ee++++ +  + ++ + +va ++ L ++  
  gi|300712942|ref|YP_003738754.1|  27 GETLSSYVYKLMQAERQRQ-NLdqsATELSAEERIEALIAE-GTDALEEIAEDIRDMNARAGTYSVANFELLKQNYP 101
                                       2333344444444333332.222434444455679999875.9*******9999888888899999*********** PP

                              Not1 267 pearYlllsaianqLRYp.nshT 288
                                          r  +l+  a +LRYp   hT
  gi|300712942|ref|YP_003738754.1| 102 DARRREVLQTGARRLRYPlEEHT 124
                                       ******************44566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1474  (0.0822132); expected 358.6 (0.02)
Passed bias filter:                      723  (0.0403257); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1213.39
//
Query:       gi|300712943|ref|YP_003738755.1|  [L=173]
Description: relaxase/mobilization nuclease domain-containing protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-05   23.1   6.2    6.1e-05   22.8   6.2    1.2  1  Relaxase    Relaxase/Mobilisation nuclease domain
     0.0014   18.0   0.4     0.0014   18.0   0.4    2.6  3  MobL        MobL relaxases


Domain annotation for each model (and alignments):
>> Relaxase  Relaxase/Mobilisation nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   6.2   6.8e-09   6.1e-05      57     163 ..      55     160 ..      16     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.8e-09
                          Relaxase  57 vhhiiqSFspge.ltpeqineigrelakklgpgn..hqyavatHvDkdhlHnHiviNrvnletgkkfren..keayr 128
                                         h+i S + g  l+ ++i +  r+++++++  +    ya  +H+D++h+H H+++       g+k + +  + + +
  gi|300712943|ref|YP_003738755.1|  55 ERHMIISPENGNdLSNDEIGKETRRTMEQFTKNRptVTYAYSVHRDTEHPHAHVAMT------GEKTDLYmdRGDVE 125
                                       379999999999999999999999999999985433678999************984......33333331144566 PP

                          Relaxase 129 klrk.vndelasreglsideksprnrqseaekekae 163
                                       ++r+ +n+++ +re++++  + +++r +e++ +++e
  gi|300712943|ref|YP_003738755.1| 126 NVREtANERMVERERYKHRRQ-EKERANERDSRERE 160
                                       666625778999999999887.77777777777666 PP

>> MobL  MobL relaxases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.051   4.6e+02      20      50 ..      16      46 ..       2      58 .. 0.58
   2 !   18.0   0.4   1.5e-07    0.0014     130     171 ..      75     113 ..      53     120 .. 0.76
   3 ?   -2.5   4.4      0.26   2.3e+03     341     369 ..     132     160 ..     113     171 .. 0.42

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.051
                              MobL 20 dYvdYidRdeavssvdnredtlk.tkkekafv 50
                                        + Yi+R+ ++  v++r  +l  +k+++ fv
  gi|300712943|ref|YP_003738755.1| 16 KLMAYIGREGDT-PVHDRAGRLIsNKQKERFV 46
                                      457999999999.4444444333144444444 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.5e-07
                              MobL 130 kvvreaieellkkeglqesavWvaaiHlnTdniHvHlatvEp 171
                                       k +r ++e+++k+    +  ++  ++H++T+++H H+a++ +
  gi|300712943|ref|YP_003738755.1|  75 KETRRTMEQFTKN---RPTVTYAYSVHRDTEHPHAHVAMTGE 113
                                       4456666666655...56699*****************9865 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.26
                              MobL 341 klrlkeksreeenkseenelekfkreeai 369
                                       + r+ e++r +++++e+++ +++++ e+ 
  gi|300712943|ref|YP_003738755.1| 132 NERMVERERYKHRRQEKERANERDSRERE 160
                                       33323333333333222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1328  (0.0740699); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1286.89
//
Query:       gi|300712944|ref|YP_003738756.1|  [L=367]
Description: Type IV secretory pathway VirD4 protein-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-15   57.1   0.1    2.8e-15   56.1   0.1    1.4  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
    3.6e-07   30.5   0.0    4.8e-07   30.1   0.0    1.2  1  DUF87          Helicase HerA, central domain
     0.0062   16.8   0.0      0.012   15.9   0.0    1.5  1  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.035   14.5   0.1       0.12   12.8   0.1    1.9  1  AAA_16         AAA ATPase domain
      0.084   12.1   0.0       0.21   10.8   0.0    1.7  2  Zeta_toxin     Zeta toxin
      0.098   11.2   0.0       0.14   10.7   0.0    1.2  1  DUF853         Bacterial protein of unknown function (DUF853)
       0.11   12.0   0.0       0.22   11.0   0.0    1.4  1  S6PP           Sucrose-6F-phosphate phosphohydrolase
       0.12   11.7   0.0        1.1    8.6   0.0    2.4  3  FtsK_SpoIIIE   FtsK/SpoIIIE family


Domain annotation for each model (and alignments):
>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   1.3e-18   2.8e-15      17     162 ..     146     298 ..     140     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.3e-18
                     TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairarg.draivlDltGafvsrfydegkdillnPlDaRs.a......aWsvfaeik 85 
                                        +l +G+ G+GK+++l++++++++a   + ++v+D++ ++  +f +e+   ++    + s +      aW++fae++
  gi|300712944|ref|YP_003738756.1| 146 SLLTLGASGAGKSETLKHFVDQLQADPsEPVVVFDMKRDYQ-AFLKERGASMIRLSSQGSsTeigspiAWNIFAEME 221
                                       56889*******************986377999****9975.555554444443333322122333347******** PP

                     TrwB_AAD_bind  86 eksdfaeiAaalipedggssdpfWaeaartvlaetlrelvre.kkksnaallralltadleeLkellagteaaalva 161
                                       +++d++eiA +l p+ g ++++f+ +a+r+++a+ l+ l+re ++++na+l+r  ++a+ ++++e l +   + l+a
  gi|300712944|ref|YP_003738756.1| 222 TEADADEIARSLFPK-GRDQNNFFDTAGRQLFAANLKYLKRElDNPTNADLVRYWQRASPKKMHENLSRDGHEDLTA 297
                                       ***************.***********************987367788*****************999988888877 PP

                     TrwB_AAD_bind 162 e 162
                                        
  gi|300712944|ref|YP_003738756.1| 298 A 298
                                       4 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.1e-10   4.8e-07      24      85 ..     145     206 ..     141     309 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.1e-10
                             DUF87  24 rHlAilgsTGsGKSntvavLleellekkgatililDpHGEYgkalekllsekvkvitpspsa 85 
                                       r+l+ lg +G+GKS t +  +++l ++++ +++++D+  +Y ++l++++++ +++ ++ +s+
  gi|300712944|ref|YP_003738756.1| 145 RSLLTLGASGAGKSETLKHFVDQLQADPSEPVVVFDMKRDYQAFLKERGASMIRLSSQGSST 206
                                       77888****************************************77766666666655444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.3e-06     0.012       5      62 ..     144     214 ..     140     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.3e-06
                            AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee...............erpevvfvtlpsstsskdllrellr 62 
                                       +++l+  G sG+GK+ +l+ +++ql+++++  e               ++++   + l+s++ss+++ + ++ 
  gi|300712944|ref|YP_003738756.1| 144 RRSLLTLGASGAGKSETLKHFVDQLQADPS--EpvvvfdmkrdyqaflKERGASMIRLSSQGSSTEIGSPIAW 214
                                       6778889******************75544..24588888777777766666667777777777776555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   5.3e-05      0.12      24      75 ..     143     191 ..     132     325 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.3e-05
                            AAA_16  24 p.elvllsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipysalaqa 75 
                                       p +++l  G+sG GKs  ++++ ++l++d  +        + +++++ y+a+++ 
  gi|300712944|ref|YP_003738756.1| 143 PrRSLLTLGASGAGKSETLKHFVDQLQADpsE------PVVVFDMKRDYQAFLKE 191
                                       4589999********************99653......33333333333333333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.5e-05      0.21      23      50 ..     151     180 ..     134     202 .. 0.86
   2 ?   -2.8   0.0       1.4   3.2e+03     142     165 ..     260     290 ..     253     302 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.5e-05
                        Zeta_toxin  23 GqpGAGKselaellkdele..rqgnvvrld 50 
                                       G++GAGKse+++ + d+l+  + + vv++d
  gi|300712944|ref|YP_003738756.1| 151 GASGAGKSETLKHFVDQLQadPSEPVVVFD 180
                                       899***************987788888877 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                        Zeta_toxin 142 dRyeee.vae......gRlvpkeehdeafeg 165
                                       +R++ +  ++       R  pk+ h++  + 
  gi|300712944|ref|YP_003738756.1| 260 KRELDNpTNAdlvrywQRASPKKMHENLSRD 290
                                       5555554222454444466677777666555 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.2e-05      0.14      21      63 ..     144     187 ..     126     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.2e-05
                            DUF853  21 nrhGliaGatGtGktvtLqvlaeslsea.GvpvfladvkGdLsg 63 
                                        r  l  Ga G+Gk  tL+++ ++l ++   pv++ d+k d  +
  gi|300712944|ref|YP_003738756.1| 144 RRSLLTLGASGAGKSETLKHFVDQLQADpSEPVVVFDMKRDYQA 187
                                       4445666*****************97652679*******99865 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.22     162     200 ..     153     191 ..     145     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
                                       TT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSS CS
                              S6PP 162 kraskgeAlryLakkleleleqilvcGdsgnDeellign 200
                                        +a+k+e+l+++ ++l++++++ +v+ d + D + ++++
  gi|300712944|ref|YP_003738756.1| 153 SGAGKSETLKHFVDQLQADPSEPVVVFDMKRDYQAFLKE 191
                                       689*******************************99655 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.82   1.8e+03     172     209 ..      28      66 ..      16      69 .. 0.78
   2 ?    8.6   0.0   0.00049       1.1      40      60 ..     145     165 ..     113     174 .. 0.78
   3 ?   -0.7   0.0      0.32   7.2e+02     151     176 ..     181     206 ..     167     210 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.82
                                       ....-----------B--.---EEEEEEC-HHHHHHHHH CS
                      FtsK_SpoIIIE 172 qgpsygvhvlvtagrele.krpslvvivderieLrlaap 209
                                       +gp+    v+ +  r  +  + +l +i++ +++L la+ 
  gi|300712944|ref|YP_003738756.1|  28 VGPYDAWRVITAPLRDVNrALTPLAAIIGWFVALWLADV 66 
                                       6677777777776666666899999*********99986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00049
                                       .SEEEE--TTSSHHHHHHHHH CS
                      FtsK_SpoIIIE  40 shllvaGatgsGKStalntLi 60 
                                         ll++Ga+g GKS++l+ ++
  gi|300712944|ref|YP_003738756.1| 145 RSLLTLGASGAGKSETLKHFV 165
                                       5699*************9876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.32
                                       TT-......................- CS
                      FtsK_SpoIIIE 151 lvlDnyddlaaeneritsLsnqgpsy 176
                                       + +D  + l++++++++ Ls+qg+s 
  gi|300712944|ref|YP_003738756.1| 181 MKRDYQAFLKERGASMIRLSSQGSST 206
                                       34445555677777*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2815.56
//
Query:       gi|300712945|ref|YP_003738757.1|  [L=168]
Description: Type IV secretory pathway VirD4 protein-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-13   48.7   0.0    8.2e-13   48.4   0.0    1.1  1  TraG-D_C         TraM recognition site of TraD and TraG
    8.8e-11   41.3   0.0    9.9e-11   41.2   0.0    1.0  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
    2.1e-07   30.1   0.0    2.1e-07   30.1   0.0    1.2  1  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra


Domain annotation for each model (and alignments):
>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.4e-16   8.2e-13       3      98 ..      22     119 ..      20     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.4e-16
                          TraG-D_C   3 lfllDEfanlgki.pdleellstgrsrgislvlilQsiaqleelYgkegaetilgncdvklflgvndeetaeelSkl 78 
                                       + llDE+ ++g     l el+++gr+++ +++l lQs+aql+++Yg+e a+++l+++ +++ l+++de   + l + 
  gi|300712945|ref|YP_003738757.1|  22 YYLLDEIEHMGVSiSRLGELINVGRGNNCQAILSLQSVAQLQDTYGRERANALLSGMVTVIGLRTADEPSVDFLRET 98 
                                       579*******9644*************************************************************** PP

                          TraG-D_C  79 lGektvesestsssssgsg.g 98 
                                       +G++  e++ ++++++    g
  gi|300712945|ref|YP_003738757.1|  99 VGTEFNEYTGHVERKEAPLgG 119
                                       **9888776666655543352 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.7e-14   9.9e-11     240     325 ..      16     102 ..       3     138 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.7e-14
                     TrwB_AAD_bind 240 srerrlWfflDElpaLg.rleelksllaegRkfGgavvlglqsiaqlrevYGedaaqsilslvntklilrvsdaetA 315
                                       + +r  +++lDE++++g  ++ l +l++ gR     ++l lqs+aql+++YG++ a+++ls + t + lr++d+ + 
  gi|300712945|ref|YP_003738757.1|  16 DPRRSAYYLLDEIEHMGvSISRLGELINVGRGNNCQAILSLQSVAQLQDTYGRERANALLSGMVTVIGLRTADEPSV 92 
                                       344559**********967*******************************************************999 PP

                     TrwB_AAD_bind 316 eelsellGeq 325
                                         l e++G +
  gi|300712945|ref|YP_003738757.1|  93 DFLRETVGTE 102
                                       9999999975 PP

>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   3.5e-11   2.1e-07     298     385 ..      15     101 ..       1     152 [. 0.85

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.5e-11
                   T4SS-DNA_transf 298 kderpkevlflLDEfpslG.kleileealatiagYgirltlIiQsisqlketYgkegaksilsnsavvivfaasnde 373
                                        d+r   +  lLDE  ++G  +  l e + +++g + + +l  Qs++ql++tYg+e a+++ls    vi +  ++de
  gi|300712945|ref|YP_003738757.1|  15 SDPR-RSAYYLLDEIEHMGvSISRLGELINVGRGNNCQAILSLQSVAQLQDTYGRERANALLSGMVTVIGLR-TADE 89 
                                       3444.44999*********569*****************************************966666655.5558 PP

                   T4SS-DNA_transf 374 etaeyiSkllGk 385
                                          + + + +G+
  gi|300712945|ref|YP_003738757.1|  90 PSVDFLRETVGT 101
                                       899999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1233.00
//
Query:       gi|300712946|ref|YP_003738758.1|  [L=103]
Description: hypothetical protein HacjB3_18123 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 758.84
//
Query:       gi|300712947|ref|YP_003738759.1|  [L=122]
Description: hypothetical protein HacjB3_18128 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-06   25.5   0.2    1.5e-05   24.9   0.2    1.3  1  HTH_20         Helix-turn-helix domain
    4.5e-05   23.2   0.0    6.5e-05   22.7   0.0    1.2  1  TrmB           Sugar-specific transcriptional regulator TrmB
    0.00037   20.9   0.1    0.00051   20.5   0.1    1.2  1  HTH_27         Winged helix DNA-binding domain
     0.0019   17.7   0.2     0.0027   17.2   0.2    1.3  1  HTH_24         Winged helix-turn-helix DNA-binding
     0.0034   17.3   0.0     0.0073   16.3   0.0    1.6  2  Cdc6_C         CDC6, C terminal winged helix domain
     0.0094   15.8   0.2      0.014   15.3   0.2    1.2  1  MarR_2         MarR family
  ------ inclusion threshold ------
      0.026   13.5   2.2      0.031   13.2   2.2    1.2  1  DUF3375        Protein of unknown function (DUF3375)
      0.035   13.9   0.0      0.059   13.2   0.0    1.3  1  HTH_IclR       IclR helix-turn-helix domain
      0.049   13.8   0.1      0.055   13.7   0.1    1.0  1  MutS_III       MutS domain III
       0.13   12.1   0.1       0.26   11.1   0.1    1.6  1  LexA_DNA_bind  LexA DNA binding domain
       0.15   12.2   0.0       0.21   11.7   0.0    1.2  1  DUF2250        Uncharacterized protein conserved in archaea (


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   9.5e-09   1.5e-05      13      61 .]      55     103 ..      44     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 9.5e-09
                                       HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
                            HTH_20  13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvregr 61 
                                         +lr +ar+ + +  +la+ ++ +  +++++L++Le+ gLve ++egr
  gi|300712947|ref|YP_003738759.1|  55 IQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVEIEDEGR 103
                                       5678888****************************************97 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     4e-08   6.5e-05       6      58 ..      50     102 ..      49     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4e-08
                                       HHHHCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
                              TrmB   6 LseyEakvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58 
                                       Ls + +++   + ++ p +++ +a+ +g++  +v + L++Le+ GlVe+e++ 
  gi|300712947|ref|YP_003738759.1|  50 LSANNIQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVEIEDEG 102
                                       6788899999999************************************9875 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   3.1e-07   0.00051       2      61 ..      51     106 ..      50     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.1e-07
                            HTH_27   2 trqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekr 61 
                                       +++ ++ L++i+ r+ + ++++l++ + ++  +++ +l +L+ +GLv + +de  +r++r
  gi|300712947|ref|YP_003738759.1|  51 SANNIQMLRSIA-RESPESIRALARGVGRDIRQVHDNLQELESYGLV-EIEDE--GRSRR 106
                                       6778899*****.**********************************.44444..66554 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   1.6e-06    0.0027       4      48 .]      53      97 ..      50      97 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
                            HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                                      + ++ L+ + +++  s+r LA+ +g  +  v+  l++Le+ Gl++
  gi|300712947|ref|YP_003738759.1| 53 NNIQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVE 97
                                      667889*************************************96 PP

>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.7   7.6e+03      20      37 ..      18      35 ..      11      42 .. 0.67
   2 !   16.3   0.0   4.5e-06    0.0073      38      65 ..      79     106 ..      72     119 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.7
                                      HHHHHHHHHHHHTT---- CS
                            Cdc6_C 20 evyevYkslCesegvdpl 37
                                      +v e+++ l + e++dpl
  gi|300712947|ref|YP_003738759.1| 18 KVGERFEALDRGEDIDPL 35
                                      566666666666777776 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.5e-06
                                       -HHHHHHHHHHHHHTTSEEEEEEE-CC. CS
                            Cdc6_C  38 tqrevsdllseLemlgileleksskGrr 65 
                                       + r+v+d l+eLe++g++e+e +++ rr
  gi|300712947|ref|YP_003738759.1|  79 DIRQVHDNLQELESYGLVEIEDEGRSRR 106
                                       679******************9855443 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   8.4e-06     0.014       8      61 ..      55     106 ..      50     107 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.4e-06
                                       HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
                            MarR_2   8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61 
                                        + L  ++r+ ++  ++++lar  g +   v+  l++L++ GLve ++  + +R
  gi|300712947|ref|YP_003738759.1|  55 IQMLRSIARESPE--SIRALARGVGRDIRQVHDNLQELESYGLVEIEDEGRSRR 106
                                       6889999999984..******************************998766665 PP

>> DUF3375  Protein of unknown function (DUF3375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.2   1.9e-05     0.031     148     213 ..      40     105 ..      16     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
                           DUF3375 148 aeidaeidrlrageveelddeqvlerireilnlareLpaDFrrVeeefreldrelreriaeeegsk 213
                                        ++++ ++rl +    ++ ++ ++e  + i +lar++  D+r+V ++++el    + +i +e +s+
  gi|300712947|ref|YP_003738759.1|  40 FQREEDLQRLLSANNIQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVEIEDEGRSR 105
                                       578888999999555555577899***************************998888888888887 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.6e-05     0.059       7      49 ..      56      97 ..      53     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                                      HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                          HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                                      + L+ +a++ +e +++ lAr  g     vh  Lq L+  G+ve
  gi|300712947|ref|YP_003738759.1| 56 QMLRSIARESPE-SIRALARGVGRDIRQVHDNLQELESYGLVE 97
                                      88*********9.9****************************8 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.4e-05     0.055      35     109 ..       3      92 ..       2     114 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
                                       HHHHHHHH--BS-HHHHHHHHHHHHHT..TT.HHHHHHHHTT---HHHHHH..................HHHTT.-- CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxx.xx RF
                          MutS_III  35 RlLrewllqPltdleeInaRldaVeeleneelreelrellrrlpDleRlls..................rislg.ka 92 
                                       R L  ++ +P+   e++ +R +a ++ e+ +  +e++ + +  +Dl+Rlls                  r  +  ++
  gi|300712947|ref|YP_003738759.1|   3 RTLTVRVASPSNAFEKVGERFEALDRGEDIDPLYEITFQRE--EDLQRLLSanniqmlrsiarespesiR--ALaRG 75 
                                       89999********************9767776777776655..9******86655555544433333221..11233 PP

                                       -HHHHHHHHHHHHHHHT CS
                                       xxxxxxxxxxxxxxxxx RF
                          MutS_III  93 kardlkallealkalee 109
                                         rd++++++ l++le+
  gi|300712947|ref|YP_003738759.1|  76 VGRDIRQVHDNLQELES 92 
                                       35567777777776654 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00016      0.26      24      64 ..      65     105 ..      51     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                                       S---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GG.G-CC CS
                     LexA_DNA_bind  24 ypPsireiaralglkSpsaveehLkaLerKGyierdp.gkpR 64 
                                        p sir +ar +g    + v+  L+ Le  G++e+++ g++R
  gi|300712947|ref|YP_003738759.1|  65 SPESIRALARGVGRD-IRQVHDNLQELESYGLVEIEDeGRSR 105
                                       5889*********77.99****************97526777 PP

>> DUF2250  Uncharacterized protein conserved in archaea (DUF2250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.21       9      54 ..      53      98 ..      46     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                           DUF2250  9 lalkvlkhlkkanvdYaksiakeleipleevrellkkLeelGLler 54
                                      +++++l+ +++  ++  + +a+ +  ++ +v++ l++Le+ GL+e 
  gi|300712947|ref|YP_003738759.1| 53 NNIQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVEI 98
                                      5678899999999999999*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 918.08
//
Query:       gi|300712948|ref|YP_003738760.1|  [L=177]
Description: hypothetical protein HacjB3_18133 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.2   0.1       0.15   12.2   0.1    1.5  2  DUF5392   Family of unknown function (DUF5392)
        9.6    4.8   5.8         14    4.3   5.8    1.5  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> DUF5392  Family of unknown function (DUF5392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       0.8   7.2e+03      42      52 ..      10      20 ..       6      33 .. 0.52
   2 ?   12.2   0.1   1.7e-05      0.15      32     100 ..      70     138 ..      64     160 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.8
                           DUF5392 42 linlillllka 52
                                      ++ +++l+l +
  gi|300712948|ref|YP_003738760.1| 10 VFIIFALVLLV 20
                                      33333333332 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.7e-05
                           DUF5392  32 fislPLllvslinli.llllkaeleedsliaiilyallgAlGlAlfkEsrlkkkeiqkssikYileRikk 100
                                       ++ + L +++++ ++ +lll+++  e + i  ++y + g +G+ l+  s+l+++ ++  +i++ l+R   
  gi|300712948|ref|YP_003738760.1|  70 IWLIRLGSIGIVSMLgSLLLSFTNAEGENILTLIYVIGGVIGIILLARSQLLNRALTP-VIEWALDRTTD 138
                                       5666666677776532555555555555667789********************9975.67788887654 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   5.8    0.0015        14     375     439 ..      64     127 ..       3     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0015
                           DUF2207 375 kgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllfsrllgrrte 439
                                         +++  +l+ lg ++i+ +l  +ll+ ++ + + ++l ++ +i ++i+ii+l+ ++ l +++t+
  gi|300712948|ref|YP_003738760.1|  64 SRRTIVIWLIRLGSIGIVSMLGSLLLS-FTNAEGENILTLIYVIGGVIGIILLARSQLLNRALTP 127
                                       446666777777777766666655544.5555558888888888888888887777655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1397.73
//
Query:       gi|300712949|ref|YP_003738761.1|  [L=92]
Description: hypothetical protein HacjB3_18138 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   25.8   0.0    1.4e-05   25.6   0.0    1.1  1  ParE_toxin  ParE toxin of type II toxin-antitoxin system, par


Domain annotation for each model (and alignments):
>> ParE_toxin  ParE toxin of type II toxin-antitoxin system, parDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   7.7e-10   1.4e-05       2      88 ..       8      86 ..       7      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 7.7e-10
                                      EEEHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHTTTSEECTSTC..CTTEEEEEECTEEEEEEE.ETSTTE CS
                        ParE_toxin  2 rltprAlkdlkkiadyiardgpaakrfldaleealellaenpalgrprrelg..lkglrririgdyriiYri.ddeelv 77
                                      r+t +A++d++k+ +        ++++ ++l+e +e++ ++p  + +        + + ++r+g++r+  ++ + + + 
  gi|300712949|ref|YP_003738761.1|  8 RFTSQARDDFEKLERDD------QQQIRKKLDEICESPWRDPPEYGE----PmqNSPYKKVRVGGFRLSTTFdHSNTDM 76
                                      79***********9975......999************977777666....2235589999**********96666667 PP

                                      EEEEEEEEHHH CS
                        ParE_toxin 78 vvilrvlhrse 88
                                      + + r+ hr  
  gi|300712949|ref|YP_003738761.1| 77 I-VARIKHRGG 86
                                      7.******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 734.37
//
Query:       gi|300712950|ref|YP_003738762.1|  [L=52]
Description: hypothetical protein HacjB3_18143 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.091   13.1   0.0      0.092   13.1   0.0    1.0  1  DUF4476   Domain of unknown function (DUF4476)


Domain annotation for each model (and alignments):
>> DUF4476  Domain of unknown function (DUF4476)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.1e-06     0.092      49      84 ..      10      47 ..       3      52 .] 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.1e-06
                           DUF4476 49 sfdddrlkalkllapnivDkqns..etiidsftfssdk 84
                                      +fd d l al  +  +i D +++  e iid+f+ ++ +
  gi|300712950|ref|YP_003738762.1| 10 TFDRDELSALARAEREIRDGETYsrEEIIDEFDLDTTE 47
                                      8*******************999899******987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 420.48
//
Query:       gi|300712951|ref|YP_003738763.1|  [L=381]
Description: Alcohol dehydrogenase GroES domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-29   99.9   0.1    1.4e-28   99.0   0.1    1.4  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    6.2e-17   61.8   0.0    9.7e-13   48.2   0.0    2.3  2  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0012   18.7   0.7     0.0012   18.7   0.7    2.4  2  ADH_N_assoc      Alcohol dehydrogenase GroES-associated
     0.0062   17.2   0.0       0.01   16.5   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.018   15.7   0.0      0.035   14.7   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
      0.037   15.1   0.0       0.11   13.6   0.0    1.9  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
      0.094   12.0   0.0       0.17   11.2   0.0    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.1   5.3e-32   1.4e-28       2     106 ..      26     150 ..      25     153 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 5.3e-32
                                       TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-G CS
                             ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegee 78 
                                       ++++++++a++iCgsDlh++++   + ++ + ilGHE +Gev+evg+ev++l+ GdrVv++++iscgeC  C+++ +
  gi|300712951|ref|YP_003738763.1|  26 TDAIVEITATAICGSDLHLYND-FMPGMEEGDILGHEPMGEVVEVGEEVDDLREGDRVVIPFTISCGECWFCENDLY 101
                                       6899******************.8***************************************************** PP

                                       GG-................TTBEETTTS.....S-SSSBSEEEECGGGE CS
                             ADH_N  79 nlC................eeakllgvs.....ldGgfaeyvvvpekkl 106
                                       +lC                + a+l+g+s     +dGg+aey+ vp++++
  gi|300712951|ref|YP_003738763.1| 102 SLCdetnpnaemaaetmghSPAGLFGFShtlggYDGGQAEYLRVPHADV 150
                                       **********99998888877788888799999************9876 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   3.8e-16   9.7e-13       1      70 [.     196     266 ..     196     274 .. 0.93
   2 !   11.8   0.0   7.2e-05      0.18      59     109 ..     271     322 ..     266     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3.8e-16
                                       HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHH CS
                        ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsga 70 
                                       +vG++a+q A ++Ga +via+d+ ee+l +a+    +evi+y+e+d+ e++ + t+g+g+d  +++vGs+a
  gi|300712951|ref|YP_003738763.1| 196 PVGQFAIQSAWMMGAdRVIAIDRIEERLGMAEGHADTEVIDYSEDDVYEWLMDETDGRGPDRCIDAVGSEA 266
                                       7*********************************9*******776***********************654 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.2e-05
                                       EEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEEHHHHHHTT-EE CS
                        ADH_zinc_N  59 vdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefdlrnlllkeksi 109
                                       vd v + +  + +l++a+k++++gG+l + G+   g +++++++l+ k +++
  gi|300712951|ref|YP_003738763.1| 271 VDHVPDEPDRPYVLQEAIKSCRKGGTLSIPGVyIDGVDDMPMGPLMNKALTV 322
                                       55566666678899******************9888888********99998 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.7   4.7e-07    0.0012       1      22 [.       1      22 [.       1      23 [. 0.96
   2 ?   -1.4   0.6      0.94   2.4e+03      14      19 ..     271     276 ..     271     276 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.7e-07
                       ADH_N_assoc  1 MKAVTyqGpkdVrVeeVPDPkI 22
                                      M A+ ++   dVrV++VP P+I
  gi|300712951|ref|YP_003738763.1|  1 MQALRWHDEGDVRVDDVPKPEI 22
                                      99999****************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.94
                       ADH_N_assoc  14 VeeVPD 19 
                                       V++VPD
  gi|300712951|ref|YP_003738763.1| 271 VDHVPD 276
                                       99***9 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.1e-06      0.01       4      97 .]     192     295 ..     189     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.1e-06
                                       ET-TT.SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS..S.....STTTEEEEEE.. CS
                   Methyltransf_25   4 lGcGt.GrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp..f.....edgsfDlvvs.. 70 
                                        GcG+ G+++++ a  +g+ +v+++D  ee l  a+ +a+ e   +++ + d+ ++   +     +d+ +D+v s  
  gi|300712951|ref|YP_003738763.1| 192 WGCGPvGQFAIQSAWMMGADRVIAIDRIEERLGMAEGHADTE--VIDYSEDDVYEWLmdEtdgrgPDRCIDAVGSea 266
                                       599988999999999989*********************765..78888888866532212334499********55 PP

                                       .ESTGGG.SSHHHHHHHHHHHHHHEEEEE CS
                   Methyltransf_25  71 .sgalhh.lsdedlekalkeiarvLkpgG 97 
                                          ++ h  +++d++ +l+e+ + +++gG
  gi|300712951|ref|YP_003738763.1| 267 hHTCVDHvPDEPDRPYVLQEAIKSCRKGG 295
                                       3333557345789999***********99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.4e-05     0.035       4      95 ..     193     298 ..     191     299 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                                       T-T.TSHHHHHHH.HTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.......TSS-TT-EEEEEEES. CS
                   Methyltransf_11   4 GcG.tGrlaeala.krg.arvvgvDlskemlklakekaseeglkvefvvadaek.......lpfednsfDlvvsse. 69 
                                       GcG  G++a + a   g  rv+++D  +e l +a+ +a +e   +++ + d+ +          +d  +D+v s   
  gi|300712951|ref|YP_003738763.1| 193 GCGpVGQFAIQSAwMMGaDRVIAIDRIEERLGMAEGHADTEV--IDYSEDDVYEwlmdetdGRGPDRCIDAVGSEAh 267
                                       8887788777777545589****************9999998..66655555433211111458999*****99986 PP

                                       ..-CCC-...CCHHHHHHHHHHHEEEEEEEE CS
                   Methyltransf_11  70 ..vlhhv...edpekalkeiaRvLkpgGllv 95 
                                         +++hv   +d+  +l+e+ + +++gG+l 
  gi|300712951|ref|YP_003738763.1| 268 htCVDHVpdePDRPYVLQEAIKSCRKGGTLS 298
                                       667777787779999*************986 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.2e-05      0.11       4      45 ..     232     276 ..     229     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.2e-05
                                       SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEE CS
                      ADH_zinc_N_2   4 devidyrtedfe....aatggegvDvvldtvggealleaslkvlpg 45 
                                       +evidy ++d+     ++t+g+g D  +d+vg+ea+ + +++++p+
  gi|300712951|ref|YP_003738763.1| 232 TEVIDYSEDDVYewlmDETDGRGPDRCIDAVGSEAH-HTCVDHVPD 276
                                       4899***888888***99**************9999.999988844 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.5e-05      0.17      29      68 ..     187     227 ..     172     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.5e-05
                                       -EEEEESTSHHHHHHHHHHHHTT-E.EEEEESSHHHHHHHH CS
                       AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgak.VtvlDvrparleqle 68 
                                        +v v G G +G+ Ai+ a  +ga+ V ++D  ++rl   e
  gi|300712951|ref|YP_003738763.1| 187 DTVAVWGCGPVGQFAIQSAWMMGADrVIAIDRIEERLGMAE 227
                                       5799********************65999999888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2768.01
//
Query:       gi|300712952|ref|YP_003738764.1|  [L=82]
Description: hypothetical protein HacjB3_18153 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11    9.9   0.0       0.12    9.8   0.0    1.0  1  FancD2    Fanconi anaemia protein FancD2 nuclease


Domain annotation for each model (and alignments):
>> FancD2  Fanconi anaemia protein FancD2 nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   6.7e-06      0.12     154     213 ..      15      75 ..      11      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 6.7e-06
                                       HHHHHHHHHS----TT---HH.HHHHGGGTT-S--SSHHHHHHHHHHHHHHS-TTTHHHHH CS
                            FancD2 154 lfeklPeflfesvgsdglnlp.rliinqlkWldrivdskdltsklmqlisvaPveiqrdii 213
                                       l++++ + l es+ s  ++ + ++  + +k ldr +d  d+t +l  l+s++ ve+  +i 
  gi|300712952|ref|YP_003738764.1|  15 LYDRVGDLLNESTRSGAIDASaQFTEEMMKNLDRAMDHPDMTPELAALLSMSQVELEYEIQ 75 
                                       78999999999999999987614555678**************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 651.84
//
Query:       gi|300712953|ref|YP_003738765.1|  [L=88]
Description: hypothetical protein HacjB3_18158 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-07   31.0   0.1    2.6e-07   30.6   0.1    1.2  1  HTH_20         Helix-turn-helix domain
    6.8e-06   25.9   0.0    9.5e-06   25.4   0.0    1.1  1  MarR_2         MarR family
    2.5e-05   23.7   0.0    3.6e-05   23.2   0.0    1.2  1  HTH_24         Winged helix-turn-helix DNA-binding
    0.00012   22.0   0.0    0.00016   21.6   0.0    1.2  1  HTH_11         HTH domain
    0.00048   19.9   0.0    0.00063   19.6   0.0    1.2  1  TrmB           Sugar-specific transcriptional regulator TrmB
    0.00058   19.6   0.8    0.00086   19.1   0.8    1.3  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
     0.0025   17.6   0.0     0.0037   17.0   0.0    1.3  1  HTH_23         Homeodomain-like domain
      0.007   15.9   0.0       0.01   15.4   0.0    1.3  1  HTH_CodY       CodY helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.5   0.2      0.016   15.0   0.2    1.2  1  HTH_IclR       IclR helix-turn-helix domain
      0.014   15.3   0.0       0.02   14.7   0.0    1.2  1  HTH_5          Bacterial regulatory protein, arsR family
      0.024   14.6   0.0      0.027   14.4   0.0    1.2  1  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.032   14.1   0.0      0.042   13.7   0.0    1.1  1  HxlR           HxlR-like helix-turn-helix
       0.05   13.6   0.0      0.062   13.3   0.0    1.2  1  HTH_29         Winged helix-turn helix
      0.055   13.6   0.1      0.072   13.3   0.1    1.2  1  AbiEi_4        Transcriptional regulator, AbiEi antitoxin
      0.055   13.2   0.0      0.076   12.8   0.0    1.2  1  HTH_DeoR       DeoR-like helix-turn-helix domain
      0.058   13.4   0.0      0.074   13.0   0.0    1.2  1  Dimerisation2  Dimerisation domain
       0.07   13.0   0.0       0.31   10.9   0.0    1.9  1  Phage_AlpA     Prophage CP4-57 regulatory protein (AlpA)
      0.075   13.1   0.0       0.21   11.7   0.0    1.7  2  HTH_7          Helix-turn-helix domain of resolvase
      0.075   13.0   0.0        0.1   12.5   0.0    1.3  1  MarR           MarR family
      0.084   12.1   0.0      0.096   12.0   0.0    1.1  1  EAP30          EAP30/Vps36 family
        0.1   12.4   0.0       0.15   11.9   0.0    1.2  1  HTH_30         PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   3.1e-10   2.6e-07      14      60 ..      19      64 ..      18      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 3.1e-10
                                      HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
                            HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                                      r+l+aL +++ l+a ++a+ l++s++ ++++Lr L e g ve  + g
  gi|300712953|ref|YP_003738765.1| 19 RVLDAL-GEGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEKHTFG 64
                                      79****.*********************************9998876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.1e-08   9.5e-06       7      53 ..      17      60 ..      13      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.1e-08
                                      HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
                            MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                                      + rvL aLg +    l+++++a++lg s++a+ r+l+ L + G ve+
  gi|300712953|ref|YP_003738765.1| 17 DERVLDALGEGT---LSAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      569******999...9***************************9997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.2e-08   3.6e-05       4      48 .]      16      59 ..      15      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.2e-08
                            HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                                      td ++L +L + + +s +++A++lg S+++  rrl++L e+G ++
  gi|300712953|ref|YP_003738765.1| 16 TDERVLDALGE-GTLSAQQVADKLGCSRQAADRRLRNLLEDGTVE 59
                                      78999999999.******************************875 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.8e-07   0.00016      13      43 ..      26      56 ..      19      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.8e-07
                            HTH_11 13 rgpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                                      +g++s+++ A++L++Sr++  r+++ L e g
  gi|300712953|ref|YP_003738765.1| 26 EGTLSAQQVADKLGCSRQAADRRLRNLLEDG 56
                                      578************************9988 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.4e-07   0.00063      19      56 ..      25      62 ..      16      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.4e-07
                                      HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
                              TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVerek 56
                                       +g ++a+++a +lg +r+ + + Lr+L++ G Ve+  
  gi|300712953|ref|YP_003738765.1| 25 GEGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEKHT 62
                                      57999******************************976 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.8     1e-06   0.00086       4      41 ..      16      52 ..      15      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1e-06
                     HTH_AsnC-type  4 iDrkILeaLqedaRisyaeLAervGlSestvlrRvrrL 41
                                      +D + L+aL   + +s +++A+++G+S++++ rR+r L
  gi|300712953|ref|YP_003738765.1| 16 TDERVLDALG-EGTLSAQQVADKLGCSRQAADRRLRNL 52
                                      6888888888.599*********************988 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.3e-06    0.0037      18      45 ..      29      56 ..      19      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.3e-06
                            HTH_23 18 lsvreIAreLgvsrrTvyrwlkryreeG 45
                                      ls +++A++Lg+sr+  +r l+   e+G
  gi|300712953|ref|YP_003738765.1| 29 LSAQQVADKLGCSRQAADRRLRNLLEDG 56
                                      6889**************9999887777 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-05      0.01       2      40 ..      26      64 ..      25      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
                          HTH_CodY  2 eGrLtaskiaDriGitrsvivnaLrkLesaGiiesrsLG 40
                                      eG L a ++aD++G  r      Lr L   G +e    G
  gi|300712953|ref|YP_003738765.1| 26 EGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEKHTFG 64
                                      9**************************999*99988877 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.2   1.9e-05     0.016       7      50 ..      19      60 ..      19      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
                                      HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
                          HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                                      ++Ldal+e++   + +++A+++g ++ ++ R L+ L e G ve+
  gi|300712953|ref|YP_003738765.1| 19 RVLDALGEGTL--SAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      58999999886..6***************************997 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.4e-05      0.02       6      47 .]      19      60 ..      19      60 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
                                      HHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                             HTH_5  6 kILklLaegelcvcelaeelglsqstvShHLkkLreaGLVek 47
                                      ++L +L eg l++ + a++lg s+ + ++ L+ L e G Vek
  gi|300712953|ref|YP_003738765.1| 19 RVLDALGEGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      5899**********************************9986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.2e-05     0.027      21      53 ..      28      60 ..      10      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.2e-05
                                      EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
                         HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisr 53
                                       l+ ++ A+ lG +r+   r l+ L ++g +++
  gi|300712953|ref|YP_003738765.1| 28 TLSAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      5899*************************9995 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     5e-05     0.042      10      68 ..      20      75 ..      16      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5e-05
                                      HHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TC CS
                              HxlR 10 ilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltek 68
                                      +l +l +g+   ++++++l ++s++   +rLr+L +dg +e+++    P  v +slt++
  gi|300712953|ref|YP_003738765.1| 20 VLDALGEGTLSAQQVADKL-GCSRQAADRRLRNLLEDGTVEKHTF--GPRSVAWSLTDE 75
                                      788999*************.9*******************99875..688899999985 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.2e-05     0.062       4      40 ..      20      56 ..      19      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.2e-05
                            HTH_29  4 allllaeGvstvsqiAkllglsrrtvyrwlkrfeegG 40
                                      +l +l eG  + +q+A  lg+sr+  +r l+   e+G
  gi|300712953|ref|YP_003738765.1| 20 VLDALGEGTLSAQQVADKLGCSRQAADRRLRNLLEDG 56
                                      7888999999****************88766666665 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   8.4e-05     0.072      11      39 ..      26      59 ..      18      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.4e-05
                           AbiEi_4 11 vGlfttrelea.aGispsa....lrrLvrkGwLv 39
                                       G+++ ++++  +G s++a    lr+L++ G ++
  gi|300712953|ref|YP_003738765.1| 26 EGTLSAQQVADkLGCSRQAadrrLRNLLEDGTVE 59
                                      4999*****999*****99899999999999877 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.9e-05     0.076      12      47 ..      26      61 ..      20      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.9e-05
                          HTH_DeoR 12 qgklsveelvellgvSeaTiRRDLneLeeqglltRt 47
                                      +g+ls +++++ lg S + + R L++L e+g+++++
  gi|300712953|ref|YP_003738765.1| 26 EGTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEKH 61
                                      69*******************************998 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.7e-05     0.074      22      54 ..      19      50 ..      14      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.7e-05
                     Dimerisation2 22 gvFdlLkeeeplsaeevaeelgasvkGterLld 54
                                      +v d+L e + lsa++va++lg+s ++ +r l+
  gi|300712953|ref|YP_003738765.1| 19 RVLDALGE-GTLSAQQVADKLGCSRQAADRRLR 50
                                      68899999.*****************9998776 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00037      0.31       3      44 ..      28      72 ..      26      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
                        Phage_AlpA  3 ilrlreVeqktglsrstiYrlik....dgeFPkkvkLGvrsVgWle 44
                                      +l+ ++V+ k+g sr   +r ++    dg+   k   G+rsV+W  
  gi|300712953|ref|YP_003738765.1| 28 TLSAQQVADKLGCSRQAADRRLRnlleDGTV-EKHTFGPRSVAWSL 72
                                      6889999999999999999988888866665.67789*******76 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.21      13      36 ..      19      43 ..      13      44 .. 0.88
   2 ?   -1.7   0.0       3.8   3.2e+03      13      22 ..      48      57 ..      47      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
                                      GGGSSTTTT.--STTTSSSS---SS CS
                             HTH_7 13 rvvkLleeG.isiskIAkevnisRs 36
                                      rv+  l eG  s++++A+ +++sR+
  gi|300712953|ref|YP_003738765.1| 19 RVLDALGEGtLSAQQVADKLGCSRQ 43
                                      67777899999*************8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.8
                                      GGGSSTTTT- CS
                             HTH_7 13 rvvkLleeGi 22
                                      r++ Lle+G+
  gi|300712953|ref|YP_003738765.1| 48 RLRNLLEDGT 57
                                      6788999995 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012       0.1      16      49 ..      27      60 ..      19      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
                                      TTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                              MarR 16 gplsvseLakklgvskstvtrvldrLekkGlieR 49
                                      g ls ++ a+klg+s+ ++ r l+ L ++G +e+
  gi|300712953|ref|YP_003738765.1| 27 GTLSAQQVADKLGCSRQAADRRLRNLLEDGTVEK 60
                                      789999************************9986 PP

>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011     0.096     190     232 ..      20      58 ..       2      59 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                             EAP30 190 llaekssgggvtaselaeeeenlgwsvarakeaLeelereGll 232
                                       +l++ ++ g ++a+++a++   lg s++ a++ L++l+++G++
  gi|300712953|ref|YP_003738765.1|  20 VLDALGE-GTLSAQQVADK---LGCSRQAADRRLRNLLEDGTV 58 
                                       4444454.589*****777...*******************86 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.15       5      35 ..      21      51 ..      19      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                                      HHHHHHTTT-HHHHHHHHTS-HHHHHHHHHH CS
                            HTH_30  5 LraylenggnisatAkaLhvHrnTlryRLrr 35
                                      L+a  e   +++++A++L+++r+    RLr 
  gi|300712953|ref|YP_003738765.1| 21 LDALGEGTLSAQQVADKLGCSRQAADRRLRN 51
                                      56666667899******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 702.64
//
Query:       gi|300712954|ref|YP_003738766.1|  [L=139]
Description: hypothetical protein HacjB3_18163 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   32.7   0.0    1.9e-07   31.9   0.0    1.5  1  Fic       Fic/DOC family


Domain annotation for each model (and alignments):
>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     1e-11   1.9e-07      40      96 ..      37      87 ..       8      88 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1e-11
                                      -SCCCHHHHHHHHHHHHCHHT-S-HHHHHHHHHHHHHHH--SSS-HHHHHHHHHHHH CS
                               Fic 40 appeevpaeleelleylnelekeeplekaaalhyefekiHPFaDGNgRtarlllnll 96
                                       p  e+++  ++  ey +      ++++aa+l+ ++++ H F DGN+Rta+ ++  +
  gi|300712954|ref|YP_003738766.1| 37 SPRLELRPHTRKAAEYDD------VYIRAAFLLRKVVTAHVFEDGNKRTAWNVATSY 87
                                      333366666677777777......**************************9887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1020.89
//
Query:       gi|300712955|ref|YP_003738767.1|  [L=41]
Description: hypothetical protein HacjB3_18168 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 310.25
//
Query:       gi|300712956|ref|YP_003738768.1|  [L=35]
Description: hypothetical protein HacjB3_18173 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        92  (0.00513135); expected 358.6 (0.02)
Passed bias filter:                       86  (0.0047967); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 285.64
//
Query:       gi|300712957|ref|YP_003738769.1|  [L=547]
Description: hypothetical protein HacjB3_18178 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0031   17.3   0.0     0.0088   15.8   0.0    1.7  1  HTH_23    Homeodomain-like domain
     0.0051   16.7   0.0      0.012   15.6   0.0    1.5  1  HTH_11    HTH domain
     0.0059   16.6   0.3      0.017   15.1   0.1    2.0  2  HTH_29    Winged helix-turn helix
      0.006   16.4   0.0      0.015   15.2   0.0    1.6  1  TrmB      Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.013   15.6   0.1      0.039   14.1   0.1    1.8  1  HTH_28    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-06    0.0088      23      41 ..     380     398 ..     368     408 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.5e-06
                            HTH_23  23 IAreLgvsrrTvyrwlkry 41 
                                        A++ g+srrTvyr++ r 
  gi|300712957|ref|YP_003738769.1| 380 LAEAIGRSRRTVYRIVDRL 398
                                       699*************994 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.2e-06     0.012      20      43 ..     379     402 ..     370     411 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.2e-06
                            HTH_11  20 eLAeeLnvSrrtvrrdIkaLeelg 43 
                                        LAe +++Srrtv+r +++L++l+
  gi|300712957|ref|YP_003738769.1| 379 SLAEAIGRSRRTVYRIVDRLSDLL 402
                                       79******************9886 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   4.8e-06     0.017       4      36 ..     364     398 ..     362     401 .. 0.81
   2 ?   -3.3   0.0       2.7   9.5e+03      30      41 ..     425     436 ..     422     440 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.8e-06
                            HTH_29   4 allllaeGvs..tvsqiAkllglsrrtvyrwlkrf 36 
                                       al+ +a+G+    v  +A++ g srrtvyr+++r 
  gi|300712957|ref|YP_003738769.1| 364 ALQVMADGGQvqDVTSLAEAIGRSRRTVYRIVDRL 398
                                       5666666666667999****************996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.7
                            HTH_29  30 yrwlkrfeegGl 41 
                                       ++++++fe++G 
  gi|300712957|ref|YP_003738769.1| 425 RHAREAFENDGK 436
                                       778999999994 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.2e-06     0.015       5      48 ..     356     400 ..     354     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.2e-06
                                       HHHHHCCCHCHHHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHH CS
                              TrmB   5 GLseyEakvYlaLl.klgpatadeiaeelgvprskvYevLrsLed 48 
                                       +L+  +a++ +++    +  +++ +ae++g++r +vY+++ +L+d
  gi|300712957|ref|YP_003738769.1| 356 DLNNSDAEALQVMAdGGQVQDVTSLAEAIGRSRRTVYRIVDRLSD 400
                                       5788888998888844445689********************986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.1e-05     0.039       4      35 ..     363     397 ..     362     398 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                            HTH_28   4 eiikllaaGh...svreaArelgisrrtvyrWikr 35 
                                       e+++ +a+G+    v+ +A++ g srrtvyr + r
  gi|300712957|ref|YP_003738769.1| 363 EALQVMADGGqvqDVTSLAEAIGRSRRTVYRIVDR 397
                                       66777777754578888**************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 4278.05
//
Query:       gi|300712958|ref|YP_003738770.1|  [L=79]
Description: hypothetical protein HacjB3_18183 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-15   56.0   0.3    6.3e-15   55.7   0.3    1.1  1  VAPB_antitox    Putative antitoxin
  ------ inclusion threshold ------
       0.12   12.4   0.5        7.5    6.7   0.1    2.2  2  Unstab_antitox  Putative addiction module component
       0.15   11.8   0.3       0.16   11.7   0.3    1.1  1  Trp_oprn_chp    Tryptophan-associated transmembrane protein (


Domain annotation for each model (and alignments):
>> VAPB_antitox  Putative antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.3   1.1e-18   6.3e-15       1      67 [.       6      68 ..       6      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.1e-18
                      VAPB_antitox  1 KtIsIsdevYekLkklKregeSFsdvIerLlekkkkgkkkellelfgilseeea.deiekaskelrke 67
                                      Kt +I++++Ye+Lk+ Kr +eSFsdv++rL +  +++   + ++++g +++ +a +  ++++++l +e
  gi|300712958|ref|YP_003738770.1|  6 KTLTITEDAYERLKAHKRGDESFSDVVNRLSK--SRD---NPKKARGLWDDIDAgQDHKEKHQQLGEE 68
                                      89****************************43..333...4799*****9999999888888877665 PP

>> Unstab_antitox  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0076        45      34      50 ..      14      30 ..      11      32 .. 0.84
   2 ?    6.7   0.1    0.0012       7.5      12      30 ..      46      65 ..      44      76 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0076
                    Unstab_antitox 34 lerRlaeyeaGkvkaip 50
                                      + +Rl+++++G +++++
  gi|300712958|ref|YP_003738770.1| 14 AYERLKAHKRGDESFSD 30
                                      558********999876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
                    Unstab_antitox 12 edLwdSLde..eadpelpaaw 30
                                        Lwd++d+  ++ +   ++ 
  gi|300712958|ref|YP_003738770.1| 46 RGLWDDIDAgqDHKE-KHQQL 65
                                      569******744444.44444 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   2.7e-05      0.16     163     178 ..      28      57 ..       3      58 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
                      Trp_oprn_chp 163 e..............dserdlWdaLdrGeD 178
                                                      ++ r lWd +d+G+D
  gi|300712958|ref|YP_003738770.1|  28 FsdvvnrlsksrdnpKKARGLWDDIDAGQD 57 
                                       155666666666677999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 632.94
//
Query:       gi|300712959|ref|YP_003738771.1|  [L=51]
Description: PilT protein domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0002   21.9   0.0     0.0002   21.9   0.0    1.1  1  PIN       PIN domain
      0.002   17.9   0.0     0.0022   17.7   0.0    1.2  1  DUF5615   Domain of unknown function (DUF5615)
  ------ inclusion threshold ------
      0.078   12.4   0.0      0.094   12.2   0.0    1.1  1  XPG_I_2   XPG domain containing


Domain annotation for each model (and alignments):
>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.3e-08    0.0002      86     121 ..       9      43 ..       1      44 [. 0.81

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.3e-08
                                       HHHHSBHHHHHHHHHHHHHT-EEE.ESSTHHHHHHH CS
                               PIN  86 lkygllpnDaliaAtAkehgikliatfDedfrrvak 121
                                           +++ D+lia   +e g++++ t+D+df+r+++
  gi|300712959|ref|YP_003738771.1|   9 QGTPINAVDMLIAGIVREAGATIV-TRDSDFNRIEG 43 
                                       3344899**************888.********975 PP

>> DUF5615  Domain of unknown function (DUF5615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.7e-07    0.0022      29      61 ..       8      41 ..       3      49 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.7e-07
                           DUF5615 29 elgle.gasDeeileyAkeedriivTkDkDFgel 61
                                      ++g + +a D  i  + +e +++ivT+D+DF+++
  gi|300712959|ref|YP_003738771.1|  8 DQGTPiNAVDMLIAGIVREAGATIVTRDSDFNRI 41
                                      55666468899999999**************987 PP

>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.6e-05     0.094      31      52 ..      17      38 ..      13      39 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
                           XPG_I_2 31 DkfcAvlArklgcaVLTsDSDL 52
                                      D  +A ++r++g+++ T DSD+
  gi|300712959|ref|YP_003738771.1| 17 DMLIAGIVREAGATIVTRDSDF 38
                                      7889*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 414.09
//
Query:       gi|300712960|ref|YP_003738772.1|  [L=67]
Description: hypothetical protein HacjB3_18193 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-07   30.1   0.6    1.2e-06   28.8   0.6    1.7  1  DUF4177   Domain of unknown function (DUF4177)


Domain annotation for each model (and alignments):
>> DUF4177  Domain of unknown function (DUF4177)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.6   6.4e-11   1.2e-06       1      44 [.       7      44 ..       7      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 6.4e-11
                           DUF4177  1 YEYkvvevkegglgngkieeeeleeyqeilnelAkeGWrlvsii 44
                                      YEYk ++  +g lg   i++e++e+    +n+lAk+GW+l  +i
  gi|300712960|ref|YP_003738772.1|  7 YEYKMIQPSTGLLG---IKTENTEK---KVNRLAKDGWELDEVI 44
                                      9******7777777...66667788...************8866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 549.10
//
Query:       gi|300712961|ref|YP_003738773.1|  [L=61]
Description: hypothetical protein HacjB3_18198 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.5    7.5   5.3         12    6.1   5.3    1.8  1  PEP-CTERM  PEP-CTERM motif


Domain annotation for each model (and alignments):
>> PEP-CTERM  PEP-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.3   0.00068        12       6      18 ..      16      28 ..      16      37 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00068
                         PEP-CTERM  6 sTllLlGlGllGl 18
                                      +TllL+G+G++ l
  gi|300712961|ref|YP_003738773.1| 16 ATLLLFGFGVVFL 28
                                      79*******7663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 457.83
//
Query:       gi|300712962|ref|YP_003738774.1|  [L=56]
Description: hypothetical protein HacjB3_18203 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.5    8.0   9.1        7.4    6.5   1.3    2.2  2  MtrG      Tetrahydromethanopterin S-methyltransferase, subuni
        2.8    8.4  14.2       0.96    9.9   4.8    2.1  2  Romo1     Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> MtrG  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.3   0.00083       7.4      45      62 ..      16      33 ..       5      35 .. 0.86
   2 ?    6.5   1.4   0.00085       7.6      37      55 ..      37      55 ..      34      56 .] 0.73

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00083
                              MtrG 45 iGilYGlviGliillvyi 62
                                      +Gi++G ++G+++ lv+ 
  gi|300712962|ref|YP_003738774.1| 16 LGIAFGPLMGVVLGLVLN 33
                                      799999999999998875 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00085
                              MtrG 37 iGkkvGRdiGilYGlviGl 55
                                      iG  +G  +G ++G+v Gl
  gi|300712962|ref|YP_003738774.1| 37 IGIAIGMSLGTIFGVVWGL 55
                                      5667788888888888876 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.6     0.003        27       5      23 ..      13      31 ..       8      34 .. 0.61
   2 ?    9.9   4.8   0.00011      0.96       5      26 ..      34      55 ..      31      56 .] 0.68

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.003
                             Romo1  5 kikmGalmGaaVGlaiGll 23
                                      k+  G++ G + G+++Gl+
  gi|300712962|ref|YP_003738774.1| 13 KMGLGIAFGPLMGVVLGLV 31
                                      4555556666666666655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00011
                             Romo1  5 kikmGalmGaaVGlaiGllfGt 26
                                       i  G+++G+ +G ++G+++G+
  gi|300712962|ref|YP_003738774.1| 34 DIGIGIAIGMSLGTIFGVVWGL 55
                                      5667777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 443.27
//
Query:       gi|300712963|ref|YP_003738775.1|  [L=139]
Description: hypothetical protein HacjB3_18208 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   12.2   4.3       0.07   12.0   4.3    1.0  1  EcsB      Bacterial ABC transporter protein EcsB
        0.4   10.5   5.2       0.54   10.0   4.1    1.8  1  IncD      Inclusion membrane protein D


Domain annotation for each model (and alignments):
>> EcsB  Bacterial ABC transporter protein EcsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.3   7.8e-06      0.07     102     209 ..      22     130 ..      13     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.8e-06
                              EcsB 102 slllqll.llllvllillPlllettglsiaelllllllllllkl.lnlllkweelrlqgkkkrridrlirlllnall 176
                                        +l +++ + ++vl+i+++ +++  +l+ ++  +ll++++++ + + ll+  + l + g+++ +++ ++ ++ +a+ 
  gi|300712963|ref|YP_003738775.1|  22 KILAAIFgVAAFVLAIAALEIATNPSLTDGTTASLLVVAFVFVVgVGLLVVAAGLWI-GRSWAWTWGFVLYTGAAIS 97 
                                       555555414455666666667788888888888888888887777999999999875.558999999********** PP

                              EcsB 177 lylllalapllalllilllllvlllllkrkkkk 209
                                         +++ ++p  ++ll +++ +++ ++l+ k+++
  gi|300712963|ref|YP_003738775.1|  98 SLIAVVQTPEPVTLLGVVVPAFVAVYLYSKREQ 130
                                       *********999999999999999999998876 PP

>> IncD  Inclusion membrane protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.1     6e-05      0.54      14      60 ..      33      79 ..      21      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6e-05
                              IncD 14 vvdriallercldpsnslptakrlvavavatilavallvvagllfsg 60
                                       v  ia le + +ps +  t+  l+ va   ++ v llvva  l+ g
  gi|300712963|ref|YP_003738775.1| 33 FVLAIAALEIATNPSLTDGTTASLLVVAFVFVVGVGLLVVAAGLWIG 79
                                      57789***********************************9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1123.94
//
Query:       gi|300712964|ref|YP_003738776.1|  [L=194]
Description: hypothetical protein HacjB3_18213 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1604.84
//
Query:       gi|300712965|ref|YP_003738777.1|  [L=77]
Description: hypothetical protein HacjB3_18218 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 585.86
//
Query:       gi|300712966|ref|YP_003738778.1|  [L=88]
Description: hypothetical protein HacjB3_18223 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.013   15.4   0.1      0.015   15.2   0.1    1.1  1  LemA            LemA family
      0.025   15.2   0.0         10    6.8   0.0    2.0  2  Cytochrom_B562  Cytochrome b562


Domain annotation for each model (and alignments):
>> LemA  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   1.7e-06     0.015      52      96 ..      43      87 ..      20      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-06
                              LemA 52 ekaeaenqlssalsrllavaEnYPdLkanenfleLqeelegtEnr 96
                                      + ae+e+  ++ +++l     +Y +Lk ++ ++eL e++e++E+r
  gi|300712966|ref|YP_003738778.1| 43 RDAENEKVRQGWIRQLAYACGQYRQLKKDQDLEELAERVEQLEER 87
                                      3455666778899******************************86 PP

>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0013        11      43      86 ..       5      48 ..       2      57 .. 0.87
   2 ?    6.8   0.0    0.0012        10      12      34 ..      64      86 ..      62      88 .] 0.92

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0013
                    Cytochrom_B562 43 tpsklekdseeqkdYqeGldklidqldkaealakagkleeakaa 86
                                       p+++e d ++  d  e ++ l d + +a+++++ag + +a+++
  gi|300712966|ref|YP_003738778.1|  5 SPPTPETDGPDIPDRAEVISLLEDGISEAHRKVTAGRVRDAENE 48
                                      5677888999999999999********************99765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0012
                    Cytochrom_B562 12 alkqvakaddaeelkkalkelra 34
                                      +++q++k +d eel++ +++l++
  gi|300712966|ref|YP_003738778.1| 64 QYRQLKKDQDLEELAERVEQLEE 86
                                      799*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 679.85
//
Query:       gi|300712967|ref|YP_003738779.1|  [L=54]
Description: hypothetical protein HacjB3_18228 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       142  (0.00792013); expected 358.6 (0.02)
Passed bias filter:                      126  (0.00702772); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 422.32
//
Query:       gi|300712968|ref|YP_003738780.1|  [L=61]
Description: hypothetical protein HacjB3_18233 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.25s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 508.69
//
Query:       gi|300712969|ref|YP_003738781.1|  [L=80]
Description: hypothetical protein HacjB3_18238 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 683.71
//
Query:       gi|300712970|ref|YP_003738782.1|  [L=128]
Description: hypothetical protein HacjB3_18243 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.06   13.3   0.6       0.21   11.6   0.6    1.9  2  DUF2388   Protein of unknown function (DUF2388)


Domain annotation for each model (and alignments):
>> DUF2388  Protein of unknown function (DUF2388)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.22     4e+03      55      68 ..       3      16 ..       2      17 .. 0.80
   2 ?   11.6   0.6   1.2e-05      0.21      15      51 ..      63     100 ..      55     110 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.22
                           DUF2388 55 pelqasDleLAeaI 68
                                      p+l+ sD+ L + I
  gi|300712970|ref|YP_003738782.1|  3 PDLSESDRALVRGI 16
                                      78889999998777 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.2e-05
                           DUF2388  15 skddklvlaArdDAasFVASdGairGarLEaaLq.elR 51 
                                       ++dd    aA   A  +VA +G+i+  +LE aL+ ++R
  gi|300712970|ref|YP_003738782.1|  63 LRDDADAEAALQHAREMVAYAGEIQDDELEMALNgSIR 100
                                       56777777888888889999999999999999873455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 959.68
//
Query:       gi|300712971|ref|YP_003738783.1|  [L=67]
Description: hypothetical protein HacjB3_18248 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.065   13.1   0.3        0.1   12.5   0.3    1.2  1  Pox_A_type_inc  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   5.6e-06       0.1       8      20 ..      44      56 ..      42      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.6e-06
                    Pox_A_type_inc  8 sRIsDLErqLseC 20
                                       R +DL+rqL+ C
  gi|300712971|ref|YP_003738783.1| 44 GRLRDLDRQLTNC 56
                                      588*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.27s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 534.79
//
Query:       gi|300712972|ref|YP_003738784.1|  [L=156]
Description: hypothetical protein HacjB3_18253 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.4    9.6  10.7         31    5.3   8.5    2.3  2  KfrA_N    Plasmid replication region DNA-binding N-term


Domain annotation for each model (and alignments):
>> KfrA_N  Plasmid replication region DNA-binding N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0035        63      11      30 ..      20      45 ..      18      49 .. 0.87
   2 ?    5.3   8.5    0.0017        31      49     106 ..      80     142 ..      66     151 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0035
                            KfrA_N 11 allaeGerp......TveavrerlGg 30
                                      ++ ++Ge p      +v+a+re+lG+
  gi|300712972|ref|YP_003738784.1| 20 RMKDRGEDPvlvseqSVDAIREVLGT 45
                                      677889999999999*********97 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0017
                            KfrA_N  49 aalaaraa.pelPealaeal....laalwqaaleeaeeelaaaraelqaaraaleaeraeaea 106
                                       +al+++++  + + +l e      +++l ++   +a+e+l++a++   +a + +ea+r+ea+ 
  gi|300712972|ref|YP_003738784.1|  80 TALSQQPEtGGASPELLEDNdegsVEDLTAEERNTAREKLESAQRMETRAPQYAEAQRQEAAD 142
                                       3334444454444444444458999**********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1100.44
//
Query:       gi|300712973|ref|YP_003738785.1|  [L=155]
Description: hypothetical protein HacjB3_18258 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.7   0.8       0.02   15.1   0.8    1.3  1  CREPT     Cell-cycle alteration and expression-elevated prote
      0.024   15.1   1.6       0.05   14.1   1.4    1.7  1  KELK      KELK-motif containing domain of MRCK Ser/Thr protei
       0.17   11.9   0.4       0.23   11.4   0.4    1.3  1  HisK_N    Histidine kinase N terminal
       0.22   10.4   0.2       0.27   10.1   0.2    1.0  1  Not1      CCR4-Not complex component, Not1


Domain annotation for each model (and alignments):
>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.8   4.4e-06      0.02      42     110 ..      12      82 ..       2     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.4e-06
                             CREPT  42 dkeeaekllkqveealellaeYnkrLeaeleeRkklakmledfleaqk..ellakaeekleelkeklekvk 110
                                       +++e+++l ++ ++a e l+ Y+ +L +   +R++l +  +++ +  +  +l+a+    lee+ e ++ ++
  gi|300712973|ref|YP_003738785.1|  12 SESEKNHLKSEANDAGETLSSYVYKLMQAERQRQNLDQSATELSAEERieALIAEGTDALEEIAEDIRDMN 82 
                                       788999*********************************99987665422678888888888877766655 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.4   1.1e-05      0.05      11      55 ..      11      55 ..       5      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                              KELK 11 llkqEkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevn 55
                                      + ++Ek+ l+ e ++a E l s  + L+ a  qr+   q  +e++
  gi|300712973|ref|YP_003738785.1| 11 VSESEKNHLKSEANDAGETLSSYVYKLMQAERQRQNLDQSATELS 55
                                      6789*******************************9999988875 PP

>> HisK_N  Histidine kinase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   5.2e-05      0.23      26      75 ..      14      64 ..       6      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.2e-05
                                      -TT-TTHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHH.HHHHHHHT- CS
                            HisK_N 26 sdkDpykeevkeNgealfelviellkeeiseedlkelaeki.akeRveanv 75
                                      s+k + k+e +  ge+l + v +l++ e + ++l + a+ + a+eR+ea +
  gi|300712973|ref|YP_003738785.1| 14 SEKNHLKSEANDAGETLSSYVYKLMQAERQRQNLDQSATELsAEERIEALI 64
                                      4567788999999*********************99998875899*99965 PP

>> Not1  CCR4-Not complex component, Not1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2     6e-05      0.27     193     288 ..      27     124 ..       4     129 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6e-05
                              Not1 193 sesllaeilekleleekeketg...ekikvnvklinalVlyvgieaieeakkksskavfstkssevallskLikeld 266
                                        e+l + +++ ++ e++++ +    ++     + i+al+   g+ a+ee++++ +  + ++ + +va ++ L ++  
  gi|300712973|ref|YP_003738785.1|  27 GETLSSYVYKLMQAERQRQ-NLdqsATELSAEERIEALIAE-GTDALEEIAEDIRDMNARAGTYSVANFELLKQNYP 101
                                       2333344444444333332.222434444455679999875.9*******9999888888899999*********** PP

                              Not1 267 pearYlllsaianqLRYp.nshT 288
                                          r  +l+  a +LRYp   hT
  gi|300712973|ref|YP_003738785.1| 102 DARRREVLQTGARRLRYPlEEHT 124
                                       ******************44566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1474  (0.0822132); expected 358.6 (0.02)
Passed bias filter:                      723  (0.0403257); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1155.99
//
Query:       gi|300712974|ref|YP_003738786.1|  [L=173]
Description: relaxase/mobilization nuclease domain-containing protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-05   23.1   6.2    6.1e-05   22.8   6.2    1.2  1  Relaxase    Relaxase/Mobilisation nuclease domain
     0.0014   18.0   0.4     0.0014   18.0   0.4    2.6  3  MobL        MobL relaxases


Domain annotation for each model (and alignments):
>> Relaxase  Relaxase/Mobilisation nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   6.2   6.8e-09   6.1e-05      57     163 ..      55     160 ..      16     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.8e-09
                          Relaxase  57 vhhiiqSFspge.ltpeqineigrelakklgpgn..hqyavatHvDkdhlHnHiviNrvnletgkkfren..keayr 128
                                         h+i S + g  l+ ++i +  r+++++++  +    ya  +H+D++h+H H+++       g+k + +  + + +
  gi|300712974|ref|YP_003738786.1|  55 ERHMIISPENGNdLSNDEIGKETRRTMEQFTKNRptVTYAYSVHRDTEHPHAHVAMT------GEKTDLYmdRGDVE 125
                                       379999999999999999999999999999985433678999************984......33333331144566 PP

                          Relaxase 129 klrk.vndelasreglsideksprnrqseaekekae 163
                                       ++r+ +n+++ +re++++  + +++r +e++ +++e
  gi|300712974|ref|YP_003738786.1| 126 NVREtANERMVERERYKHRRQ-EKERANERDSRERE 160
                                       666625778999999999887.77777777777666 PP

>> MobL  MobL relaxases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.051   4.6e+02      20      50 ..      16      46 ..       2      58 .. 0.58
   2 !   18.0   0.4   1.5e-07    0.0014     130     171 ..      75     113 ..      53     120 .. 0.76
   3 ?   -2.5   4.4      0.26   2.3e+03     341     369 ..     132     160 ..     113     171 .. 0.42

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.051
                              MobL 20 dYvdYidRdeavssvdnredtlk.tkkekafv 50
                                        + Yi+R+ ++  v++r  +l  +k+++ fv
  gi|300712974|ref|YP_003738786.1| 16 KLMAYIGREGDT-PVHDRAGRLIsNKQKERFV 46
                                      457999999999.4444444333144444444 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.5e-07
                              MobL 130 kvvreaieellkkeglqesavWvaaiHlnTdniHvHlatvEp 171
                                       k +r ++e+++k+    +  ++  ++H++T+++H H+a++ +
  gi|300712974|ref|YP_003738786.1|  75 KETRRTMEQFTKN---RPTVTYAYSVHRDTEHPHAHVAMTGE 113
                                       4456666666655...56699*****************9865 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.26
                              MobL 341 klrlkeksreeenkseenelekfkreeai 369
                                       + r+ e++r +++++e+++ +++++ e+ 
  gi|300712974|ref|YP_003738786.1| 132 NERMVERERYKHRRQEKERANERDSRERE 160
                                       33323333333333222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1328  (0.0740699); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1286.73
//
Query:       gi|300712975|ref|YP_003738787.1|  [L=367]
Description: Type IV secretory pathway VirD4 protein-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-15   57.1   0.1    2.8e-15   56.1   0.1    1.4  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
    3.6e-07   30.5   0.0    4.8e-07   30.1   0.0    1.2  1  DUF87          Helicase HerA, central domain
     0.0062   16.8   0.0      0.012   15.9   0.0    1.5  1  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.035   14.5   0.1       0.12   12.8   0.1    1.9  1  AAA_16         AAA ATPase domain
      0.084   12.1   0.0       0.21   10.8   0.0    1.7  2  Zeta_toxin     Zeta toxin
      0.098   11.2   0.0       0.14   10.7   0.0    1.2  1  DUF853         Bacterial protein of unknown function (DUF853)
       0.11   12.0   0.0       0.22   11.0   0.0    1.4  1  S6PP           Sucrose-6F-phosphate phosphohydrolase
       0.12   11.7   0.0        1.1    8.6   0.0    2.4  3  FtsK_SpoIIIE   FtsK/SpoIIIE family


Domain annotation for each model (and alignments):
>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   1.3e-18   2.8e-15      17     162 ..     146     298 ..     140     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.3e-18
                     TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairarg.draivlDltGafvsrfydegkdillnPlDaRs.a......aWsvfaeik 85 
                                        +l +G+ G+GK+++l++++++++a   + ++v+D++ ++  +f +e+   ++    + s +      aW++fae++
  gi|300712975|ref|YP_003738787.1| 146 SLLTLGASGAGKSETLKHFVDQLQADPsEPVVVFDMKRDYQ-AFLKERGASMIRLSSQGSsTeigspiAWNIFAEME 221
                                       56889*******************986377999****9975.555554444443333322122333347******** PP

                     TrwB_AAD_bind  86 eksdfaeiAaalipedggssdpfWaeaartvlaetlrelvre.kkksnaallralltadleeLkellagteaaalva 161
                                       +++d++eiA +l p+ g ++++f+ +a+r+++a+ l+ l+re ++++na+l+r  ++a+ ++++e l +   + l+a
  gi|300712975|ref|YP_003738787.1| 222 TEADADEIARSLFPK-GRDQNNFFDTAGRQLFAANLKYLKRElDNPTNADLVRYWQRASPKKMHENLSRDGHEDLTA 297
                                       ***************.***********************987367788*****************999988888877 PP

                     TrwB_AAD_bind 162 e 162
                                        
  gi|300712975|ref|YP_003738787.1| 298 A 298
                                       4 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.1e-10   4.8e-07      24      85 ..     145     206 ..     141     309 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.1e-10
                             DUF87  24 rHlAilgsTGsGKSntvavLleellekkgatililDpHGEYgkalekllsekvkvitpspsa 85 
                                       r+l+ lg +G+GKS t +  +++l ++++ +++++D+  +Y ++l++++++ +++ ++ +s+
  gi|300712975|ref|YP_003738787.1| 145 RSLLTLGASGAGKSETLKHFVDQLQADPSEPVVVFDMKRDYQAFLKERGASMIRLSSQGSST 206
                                       77888****************************************77766666666655444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.3e-06     0.012       5      62 ..     144     214 ..     140     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.3e-06
                            AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee...............erpevvfvtlpsstsskdllrellr 62 
                                       +++l+  G sG+GK+ +l+ +++ql+++++  e               ++++   + l+s++ss+++ + ++ 
  gi|300712975|ref|YP_003738787.1| 144 RRSLLTLGASGAGKSETLKHFVDQLQADPS--EpvvvfdmkrdyqaflKERGASMIRLSSQGSSTEIGSPIAW 214
                                       6778889******************75544..24588888777777766666667777777777776555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   5.3e-05      0.12      24      75 ..     143     191 ..     132     325 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.3e-05
                            AAA_16  24 p.elvllsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipysalaqa 75 
                                       p +++l  G+sG GKs  ++++ ++l++d  +        + +++++ y+a+++ 
  gi|300712975|ref|YP_003738787.1| 143 PrRSLLTLGASGAGKSETLKHFVDQLQADpsE------PVVVFDMKRDYQAFLKE 191
                                       4589999********************99653......33333333333333333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.5e-05      0.21      23      50 ..     151     180 ..     134     202 .. 0.86
   2 ?   -2.8   0.0       1.4   3.2e+03     142     165 ..     260     290 ..     253     302 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.5e-05
                        Zeta_toxin  23 GqpGAGKselaellkdele..rqgnvvrld 50 
                                       G++GAGKse+++ + d+l+  + + vv++d
  gi|300712975|ref|YP_003738787.1| 151 GASGAGKSETLKHFVDQLQadPSEPVVVFD 180
                                       899***************987788888877 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                        Zeta_toxin 142 dRyeee.vae......gRlvpkeehdeafeg 165
                                       +R++ +  ++       R  pk+ h++  + 
  gi|300712975|ref|YP_003738787.1| 260 KRELDNpTNAdlvrywQRASPKKMHENLSRD 290
                                       5555554222454444466677777666555 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.2e-05      0.14      21      63 ..     144     187 ..     126     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.2e-05
                            DUF853  21 nrhGliaGatGtGktvtLqvlaeslsea.GvpvfladvkGdLsg 63 
                                        r  l  Ga G+Gk  tL+++ ++l ++   pv++ d+k d  +
  gi|300712975|ref|YP_003738787.1| 144 RRSLLTLGASGAGKSETLKHFVDQLQADpSEPVVVFDMKRDYQA 187
                                       4445666*****************97652679*******99865 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.22     162     200 ..     153     191 ..     145     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
                                       TT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSS CS
                              S6PP 162 kraskgeAlryLakkleleleqilvcGdsgnDeellign 200
                                        +a+k+e+l+++ ++l++++++ +v+ d + D + ++++
  gi|300712975|ref|YP_003738787.1| 153 SGAGKSETLKHFVDQLQADPSEPVVVFDMKRDYQAFLKE 191
                                       689*******************************99655 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.82   1.8e+03     172     209 ..      28      66 ..      16      69 .. 0.78
   2 ?    8.6   0.0   0.00049       1.1      40      60 ..     145     165 ..     113     174 .. 0.78
   3 ?   -0.7   0.0      0.32   7.2e+02     151     176 ..     181     206 ..     167     210 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.82
                                       ....-----------B--.---EEEEEEC-HHHHHHHHH CS
                      FtsK_SpoIIIE 172 qgpsygvhvlvtagrele.krpslvvivderieLrlaap 209
                                       +gp+    v+ +  r  +  + +l +i++ +++L la+ 
  gi|300712975|ref|YP_003738787.1|  28 VGPYDAWRVITAPLRDVNrALTPLAAIIGWFVALWLADV 66 
                                       6677777777776666666899999*********99986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00049
                                       .SEEEE--TTSSHHHHHHHHH CS
                      FtsK_SpoIIIE  40 shllvaGatgsGKStalntLi 60 
                                         ll++Ga+g GKS++l+ ++
  gi|300712975|ref|YP_003738787.1| 145 RSLLTLGASGAGKSETLKHFV 165
                                       5699*************9876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.32
                                       TT-......................- CS
                      FtsK_SpoIIIE 151 lvlDnyddlaaeneritsLsnqgpsy 176
                                       + +D  + l++++++++ Ls+qg+s 
  gi|300712975|ref|YP_003738787.1| 181 MKRDYQAFLKERGASMIRLSSQGSST 206
                                       34445555677777*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2728.74
//
Query:       gi|300712976|ref|YP_003738788.1|  [L=168]
Description: Type IV secretory pathway VirD4 protein-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-13   48.7   0.0    8.2e-13   48.4   0.0    1.1  1  TraG-D_C         TraM recognition site of TraD and TraG
    8.8e-11   41.3   0.0    9.9e-11   41.2   0.0    1.0  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
    2.1e-07   30.1   0.0    2.1e-07   30.1   0.0    1.2  1  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra


Domain annotation for each model (and alignments):
>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.4e-16   8.2e-13       3      98 ..      22     119 ..      20     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.4e-16
                          TraG-D_C   3 lfllDEfanlgki.pdleellstgrsrgislvlilQsiaqleelYgkegaetilgncdvklflgvndeetaeelSkl 78 
                                       + llDE+ ++g     l el+++gr+++ +++l lQs+aql+++Yg+e a+++l+++ +++ l+++de   + l + 
  gi|300712976|ref|YP_003738788.1|  22 YYLLDEIEHMGVSiSRLGELINVGRGNNCQAILSLQSVAQLQDTYGRERANALLSGMVTVIGLRTADEPSVDFLRET 98 
                                       579*******9644*************************************************************** PP

                          TraG-D_C  79 lGektvesestsssssgsg.g 98 
                                       +G++  e++ ++++++    g
  gi|300712976|ref|YP_003738788.1|  99 VGTEFNEYTGHVERKEAPLgG 119
                                       **9888776666655543352 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.7e-14   9.9e-11     240     325 ..      16     102 ..       3     138 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.7e-14
                     TrwB_AAD_bind 240 srerrlWfflDElpaLg.rleelksllaegRkfGgavvlglqsiaqlrevYGedaaqsilslvntklilrvsdaetA 315
                                       + +r  +++lDE++++g  ++ l +l++ gR     ++l lqs+aql+++YG++ a+++ls + t + lr++d+ + 
  gi|300712976|ref|YP_003738788.1|  16 DPRRSAYYLLDEIEHMGvSISRLGELINVGRGNNCQAILSLQSVAQLQDTYGRERANALLSGMVTVIGLRTADEPSV 92 
                                       344559**********967*******************************************************999 PP

                     TrwB_AAD_bind 316 eelsellGeq 325
                                         l e++G +
  gi|300712976|ref|YP_003738788.1|  93 DFLRETVGTE 102
                                       9999999975 PP

>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   3.5e-11   2.1e-07     298     385 ..      15     101 ..       1     152 [. 0.85

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.5e-11
                   T4SS-DNA_transf 298 kderpkevlflLDEfpslG.kleileealatiagYgirltlIiQsisqlketYgkegaksilsnsavvivfaasnde 373
                                        d+r   +  lLDE  ++G  +  l e + +++g + + +l  Qs++ql++tYg+e a+++ls    vi +  ++de
  gi|300712976|ref|YP_003738788.1|  15 SDPR-RSAYYLLDEIEHMGvSISRLGELINVGRGNNCQAILSLQSVAQLQDTYGRERANALLSGMVTVIGLR-TADE 89 
                                       3444.44999*********569*****************************************966666655.5558 PP

                   T4SS-DNA_transf 374 etaeyiSkllGk 385
                                          + + + +G+
  gi|300712976|ref|YP_003738788.1|  90 PSVDFLRETVGT 101
                                       899999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1363.35
//
Query:       gi|300712977|ref|YP_003738789.1|  [L=103]
Description: hypothetical protein HacjB3_18278 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 853.31
//
Query:       gi|300712978|ref|YP_003738790.1|  [L=122]
Description: hypothetical protein HacjB3_18283 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-06   25.5   0.2    1.5e-05   24.9   0.2    1.3  1  HTH_20         Helix-turn-helix domain
    4.5e-05   23.2   0.0    6.5e-05   22.7   0.0    1.2  1  TrmB           Sugar-specific transcriptional regulator TrmB
    0.00037   20.9   0.1    0.00051   20.5   0.1    1.2  1  HTH_27         Winged helix DNA-binding domain
     0.0019   17.7   0.2     0.0027   17.2   0.2    1.3  1  HTH_24         Winged helix-turn-helix DNA-binding
     0.0034   17.3   0.0     0.0073   16.3   0.0    1.6  2  Cdc6_C         CDC6, C terminal winged helix domain
     0.0094   15.8   0.2      0.014   15.3   0.2    1.2  1  MarR_2         MarR family
  ------ inclusion threshold ------
      0.026   13.5   2.2      0.031   13.2   2.2    1.2  1  DUF3375        Protein of unknown function (DUF3375)
      0.035   13.9   0.0      0.059   13.2   0.0    1.3  1  HTH_IclR       IclR helix-turn-helix domain
      0.049   13.8   0.1      0.055   13.7   0.1    1.0  1  MutS_III       MutS domain III
       0.13   12.1   0.1       0.26   11.1   0.1    1.6  1  LexA_DNA_bind  LexA DNA binding domain
       0.15   12.2   0.0       0.21   11.7   0.0    1.2  1  DUF2250        Uncharacterized protein conserved in archaea (


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   9.5e-09   1.5e-05      13      61 .]      55     103 ..      44     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 9.5e-09
                                       HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
                            HTH_20  13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvregr 61 
                                         +lr +ar+ + +  +la+ ++ +  +++++L++Le+ gLve ++egr
  gi|300712978|ref|YP_003738790.1|  55 IQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVEIEDEGR 103
                                       5678888****************************************97 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     4e-08   6.5e-05       6      58 ..      50     102 ..      49     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4e-08
                                       HHHHCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
                              TrmB   6 LseyEakvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58 
                                       Ls + +++   + ++ p +++ +a+ +g++  +v + L++Le+ GlVe+e++ 
  gi|300712978|ref|YP_003738790.1|  50 LSANNIQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVEIEDEG 102
                                       6788899999999************************************9875 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   3.1e-07   0.00051       2      61 ..      51     106 ..      50     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.1e-07
                            HTH_27   2 trqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekr 61 
                                       +++ ++ L++i+ r+ + ++++l++ + ++  +++ +l +L+ +GLv + +de  +r++r
  gi|300712978|ref|YP_003738790.1|  51 SANNIQMLRSIA-RESPESIRALARGVGRDIRQVHDNLQELESYGLV-EIEDE--GRSRR 106
                                       6778899*****.**********************************.44444..66554 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   1.6e-06    0.0027       4      48 .]      53      97 ..      50      97 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
                            HTH_24  4 tdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                                      + ++ L+ + +++  s+r LA+ +g  +  v+  l++Le+ Gl++
  gi|300712978|ref|YP_003738790.1| 53 NNIQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVE 97
                                      667889*************************************96 PP

>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.7   7.6e+03      20      37 ..      18      35 ..      11      42 .. 0.67
   2 !   16.3   0.0   4.5e-06    0.0073      38      65 ..      79     106 ..      72     119 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.7
                                      HHHHHHHHHHHHTT---- CS
                            Cdc6_C 20 evyevYkslCesegvdpl 37
                                      +v e+++ l + e++dpl
  gi|300712978|ref|YP_003738790.1| 18 KVGERFEALDRGEDIDPL 35
                                      566666666666777776 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4.5e-06
                                       -HHHHHHHHHHHHHTTSEEEEEEE-CC. CS
                            Cdc6_C  38 tqrevsdllseLemlgileleksskGrr 65 
                                       + r+v+d l+eLe++g++e+e +++ rr
  gi|300712978|ref|YP_003738790.1|  79 DIRQVHDNLQELESYGLVEIEDEGRSRR 106
                                       679******************9855443 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   8.4e-06     0.014       8      61 ..      55     106 ..      50     107 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.4e-06
                                       HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
                            MarR_2   8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61 
                                        + L  ++r+ ++  ++++lar  g +   v+  l++L++ GLve ++  + +R
  gi|300712978|ref|YP_003738790.1|  55 IQMLRSIARESPE--SIRALARGVGRDIRQVHDNLQELESYGLVEIEDEGRSRR 106
                                       6889999999984..******************************998766665 PP

>> DUF3375  Protein of unknown function (DUF3375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.2   1.9e-05     0.031     148     213 ..      40     105 ..      16     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
                           DUF3375 148 aeidaeidrlrageveelddeqvlerireilnlareLpaDFrrVeeefreldrelreriaeeegsk 213
                                        ++++ ++rl +    ++ ++ ++e  + i +lar++  D+r+V ++++el    + +i +e +s+
  gi|300712978|ref|YP_003738790.1|  40 FQREEDLQRLLSANNIQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVEIEDEGRSR 105
                                       578888999999555555577899***************************998888888888887 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.6e-05     0.059       7      49 ..      56      97 ..      53     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                                      HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                          HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                                      + L+ +a++ +e +++ lAr  g     vh  Lq L+  G+ve
  gi|300712978|ref|YP_003738790.1| 56 QMLRSIARESPE-SIRALARGVGRDIRQVHDNLQELESYGLVE 97
                                      88*********9.9****************************8 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.4e-05     0.055      35     109 ..       3      92 ..       2     114 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
                                       HHHHHHHH--BS-HHHHHHHHHHHHHT..TT.HHHHHHHHTT---HHHHHH..................HHHTT.-- CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxx.xx RF
                          MutS_III  35 RlLrewllqPltdleeInaRldaVeeleneelreelrellrrlpDleRlls..................rislg.ka 92 
                                       R L  ++ +P+   e++ +R +a ++ e+ +  +e++ + +  +Dl+Rlls                  r  +  ++
  gi|300712978|ref|YP_003738790.1|   3 RTLTVRVASPSNAFEKVGERFEALDRGEDIDPLYEITFQRE--EDLQRLLSanniqmlrsiarespesiR--ALaRG 75 
                                       89999********************9767776777776655..9******86655555544433333221..11233 PP

                                       -HHHHHHHHHHHHHHHT CS
                                       xxxxxxxxxxxxxxxxx RF
                          MutS_III  93 kardlkallealkalee 109
                                         rd++++++ l++le+
  gi|300712978|ref|YP_003738790.1|  76 VGRDIRQVHDNLQELES 92 
                                       35567777777776654 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00016      0.26      24      64 ..      65     105 ..      51     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                                       S---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GG.G-CC CS
                     LexA_DNA_bind  24 ypPsireiaralglkSpsaveehLkaLerKGyierdp.gkpR 64 
                                        p sir +ar +g    + v+  L+ Le  G++e+++ g++R
  gi|300712978|ref|YP_003738790.1|  65 SPESIRALARGVGRD-IRQVHDNLQELESYGLVEIEDeGRSR 105
                                       5889*********77.99****************97526777 PP

>> DUF2250  Uncharacterized protein conserved in archaea (DUF2250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.21       9      54 ..      53      98 ..      46     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                           DUF2250  9 lalkvlkhlkkanvdYaksiakeleipleevrellkkLeelGLler 54
                                      +++++l+ +++  ++  + +a+ +  ++ +v++ l++Le+ GL+e 
  gi|300712978|ref|YP_003738790.1| 53 NNIQMLRSIARESPESIRALARGVGRDIRQVHDNLQELESYGLVEI 98
                                      5678899999999999999*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 885.07
//
Query:       gi|300712979|ref|YP_003738791.1|  [L=177]
Description: hypothetical protein HacjB3_18288 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.2   0.1       0.15   12.2   0.1    1.5  2  DUF5392   Family of unknown function (DUF5392)
        9.6    4.8   5.8         14    4.3   5.8    1.5  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> DUF5392  Family of unknown function (DUF5392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       0.8   7.2e+03      42      52 ..      10      20 ..       6      33 .. 0.52
   2 ?   12.2   0.1   1.7e-05      0.15      32     100 ..      70     138 ..      64     160 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.8
                           DUF5392 42 linlillllka 52
                                      ++ +++l+l +
  gi|300712979|ref|YP_003738791.1| 10 VFIIFALVLLV 20
                                      33333333332 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.7e-05
                           DUF5392  32 fislPLllvslinli.llllkaeleedsliaiilyallgAlGlAlfkEsrlkkkeiqkssikYileRikk 100
                                       ++ + L +++++ ++ +lll+++  e + i  ++y + g +G+ l+  s+l+++ ++  +i++ l+R   
  gi|300712979|ref|YP_003738791.1|  70 IWLIRLGSIGIVSMLgSLLLSFTNAEGENILTLIYVIGGVIGIILLARSQLLNRALTP-VIEWALDRTTD 138
                                       5666666677776532555555555555667789********************9975.67788887654 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   5.8    0.0015        14     375     439 ..      64     127 ..       3     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0015
                           DUF2207 375 kgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllfsrllgrrte 439
                                         +++  +l+ lg ++i+ +l  +ll+ ++ + + ++l ++ +i ++i+ii+l+ ++ l +++t+
  gi|300712979|ref|YP_003738791.1|  64 SRRTIVIWLIRLGSIGIVSMLGSLLLS-FTNAEGENILTLIYVIGGVIGIILLARSQLLNRALTP 127
                                       446666777777777766666655544.5555558888888888888888887777655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1313.47
//
Query:       gi|300712980|ref|YP_003738792.1|  [L=92]
Description: hypothetical protein HacjB3_18293 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   25.8   0.0    1.4e-05   25.6   0.0    1.1  1  ParE_toxin  ParE toxin of type II toxin-antitoxin system, par


Domain annotation for each model (and alignments):
>> ParE_toxin  ParE toxin of type II toxin-antitoxin system, parDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   7.7e-10   1.4e-05       2      88 ..       8      86 ..       7      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 7.7e-10
                                      EEEHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHTTTSEECTSTC..CTTEEEEEECTEEEEEEE.ETSTTE CS
                        ParE_toxin  2 rltprAlkdlkkiadyiardgpaakrfldaleealellaenpalgrprrelg..lkglrririgdyriiYri.ddeelv 77
                                      r+t +A++d++k+ +        ++++ ++l+e +e++ ++p  + +        + + ++r+g++r+  ++ + + + 
  gi|300712980|ref|YP_003738792.1|  8 RFTSQARDDFEKLERDD------QQQIRKKLDEICESPWRDPPEYGE----PmqNSPYKKVRVGGFRLSTTFdHSNTDM 76
                                      79***********9975......999************977777666....2235589999**********96666667 PP

                                      EEEEEEEEHHH CS
                        ParE_toxin 78 vvilrvlhrse 88
                                      + + r+ hr  
  gi|300712980|ref|YP_003738792.1| 77 I-VARIKHRGG 86
                                      7.******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 694.26
//
Query:       gi|300712981|ref|YP_003738793.1|  [L=52]
Description: hypothetical protein HacjB3_18298 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.091   13.1   0.0      0.092   13.1   0.0    1.0  1  DUF4476   Domain of unknown function (DUF4476)


Domain annotation for each model (and alignments):
>> DUF4476  Domain of unknown function (DUF4476)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.1e-06     0.092      49      84 ..      10      47 ..       3      52 .] 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.1e-06
                           DUF4476 49 sfdddrlkalkllapnivDkqns..etiidsftfssdk 84
                                      +fd d l al  +  +i D +++  e iid+f+ ++ +
  gi|300712981|ref|YP_003738793.1| 10 TFDRDELSALARAEREIRDGETYsrEEIIDEFDLDTTE 47
                                      8*******************999899******987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 424.77
//
Query:       gi|300712982|ref|YP_003738794.1|  [L=381]
Description: Alcohol dehydrogenase GroES domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-29   99.9   0.1    1.4e-28   99.0   0.1    1.4  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    6.2e-17   61.8   0.0    9.7e-13   48.2   0.0    2.3  2  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0012   18.7   0.7     0.0012   18.7   0.7    2.4  2  ADH_N_assoc      Alcohol dehydrogenase GroES-associated
     0.0062   17.2   0.0       0.01   16.5   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.018   15.7   0.0      0.035   14.7   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
      0.037   15.1   0.0       0.11   13.6   0.0    1.9  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
      0.094   12.0   0.0       0.17   11.2   0.0    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.1   5.3e-32   1.4e-28       2     106 ..      26     150 ..      25     153 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 5.3e-32
                                       TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-G CS
                             ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegee 78 
                                       ++++++++a++iCgsDlh++++   + ++ + ilGHE +Gev+evg+ev++l+ GdrVv++++iscgeC  C+++ +
  gi|300712982|ref|YP_003738794.1|  26 TDAIVEITATAICGSDLHLYND-FMPGMEEGDILGHEPMGEVVEVGEEVDDLREGDRVVIPFTISCGECWFCENDLY 101
                                       6899******************.8***************************************************** PP

                                       GG-................TTBEETTTS.....S-SSSBSEEEECGGGE CS
                             ADH_N  79 nlC................eeakllgvs.....ldGgfaeyvvvpekkl 106
                                       +lC                + a+l+g+s     +dGg+aey+ vp++++
  gi|300712982|ref|YP_003738794.1| 102 SLCdetnpnaemaaetmghSPAGLFGFShtlggYDGGQAEYLRVPHADV 150
                                       **********99998888877788888799999************9876 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   3.8e-16   9.7e-13       1      70 [.     196     266 ..     196     274 .. 0.93
   2 !   11.8   0.0   7.2e-05      0.18      59     109 ..     271     322 ..     266     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3.8e-16
                                       HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHH CS
                        ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsga 70 
                                       +vG++a+q A ++Ga +via+d+ ee+l +a+    +evi+y+e+d+ e++ + t+g+g+d  +++vGs+a
  gi|300712982|ref|YP_003738794.1| 196 PVGQFAIQSAWMMGAdRVIAIDRIEERLGMAEGHADTEVIDYSEDDVYEWLMDETDGRGPDRCIDAVGSEA 266
                                       7*********************************9*******776***********************654 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.2e-05
                                       EEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEEHHHHHHTT-EE CS
                        ADH_zinc_N  59 vdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefdlrnlllkeksi 109
                                       vd v + +  + +l++a+k++++gG+l + G+   g +++++++l+ k +++
  gi|300712982|ref|YP_003738794.1| 271 VDHVPDEPDRPYVLQEAIKSCRKGGTLSIPGVyIDGVDDMPMGPLMNKALTV 322
                                       55566666678899******************9888888********99998 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.7   4.7e-07    0.0012       1      22 [.       1      22 [.       1      23 [. 0.96
   2 ?   -1.4   0.6      0.94   2.4e+03      14      19 ..     271     276 ..     271     276 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.7e-07
                       ADH_N_assoc  1 MKAVTyqGpkdVrVeeVPDPkI 22
                                      M A+ ++   dVrV++VP P+I
  gi|300712982|ref|YP_003738794.1|  1 MQALRWHDEGDVRVDDVPKPEI 22
                                      99999****************9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.94
                       ADH_N_assoc  14 VeeVPD 19 
                                       V++VPD
  gi|300712982|ref|YP_003738794.1| 271 VDHVPD 276
                                       99***9 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.1e-06      0.01       4      97 .]     192     295 ..     189     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.1e-06
                                       ET-TT.SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS..S.....STTTEEEEEE.. CS
                   Methyltransf_25   4 lGcGt.GrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp..f.....edgsfDlvvs.. 70 
                                        GcG+ G+++++ a  +g+ +v+++D  ee l  a+ +a+ e   +++ + d+ ++   +     +d+ +D+v s  
  gi|300712982|ref|YP_003738794.1| 192 WGCGPvGQFAIQSAWMMGADRVIAIDRIEERLGMAEGHADTE--VIDYSEDDVYEWLmdEtdgrgPDRCIDAVGSea 266
                                       599988999999999989*********************765..78888888866532212334499********55 PP

                                       .ESTGGG.SSHHHHHHHHHHHHHHEEEEE CS
                   Methyltransf_25  71 .sgalhh.lsdedlekalkeiarvLkpgG 97 
                                          ++ h  +++d++ +l+e+ + +++gG
  gi|300712982|ref|YP_003738794.1| 267 hHTCVDHvPDEPDRPYVLQEAIKSCRKGG 295
                                       3333557345789999***********99 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.4e-05     0.035       4      95 ..     193     298 ..     191     299 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                                       T-T.TSHHHHHHH.HTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.......TSS-TT-EEEEEEES. CS
                   Methyltransf_11   4 GcG.tGrlaeala.krg.arvvgvDlskemlklakekaseeglkvefvvadaek.......lpfednsfDlvvsse. 69 
                                       GcG  G++a + a   g  rv+++D  +e l +a+ +a +e   +++ + d+ +          +d  +D+v s   
  gi|300712982|ref|YP_003738794.1| 193 GCGpVGQFAIQSAwMMGaDRVIAIDRIEERLGMAEGHADTEV--IDYSEDDVYEwlmdetdGRGPDRCIDAVGSEAh 267
                                       8887788777777545589****************9999998..66655555433211111458999*****99986 PP

                                       ..-CCC-...CCHHHHHHHHHHHEEEEEEEE CS
                   Methyltransf_11  70 ..vlhhv...edpekalkeiaRvLkpgGllv 95 
                                         +++hv   +d+  +l+e+ + +++gG+l 
  gi|300712982|ref|YP_003738794.1| 268 htCVDHVpdePDRPYVLQEAIKSCRKGGTLS 298
                                       667777787779999*************986 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.2e-05      0.11       4      45 ..     232     276 ..     229     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.2e-05
                                       SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEE CS
                      ADH_zinc_N_2   4 devidyrtedfe....aatggegvDvvldtvggealleaslkvlpg 45 
                                       +evidy ++d+     ++t+g+g D  +d+vg+ea+ + +++++p+
  gi|300712982|ref|YP_003738794.1| 232 TEVIDYSEDDVYewlmDETDGRGPDRCIDAVGSEAH-HTCVDHVPD 276
                                       4899***888888***99**************9999.999988844 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.5e-05      0.17      29      68 ..     187     227 ..     172     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.5e-05
                                       -EEEEESTSHHHHHHHHHHHHTT-E.EEEEESSHHHHHHHH CS
                       AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgak.VtvlDvrparleqle 68 
                                        +v v G G +G+ Ai+ a  +ga+ V ++D  ++rl   e
  gi|300712982|ref|YP_003738794.1| 187 DTVAVWGCGPVGQFAIQSAWMMGADrVIAIDRIEERLGMAE 227
                                       5799********************65999999888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2634.56
//
Query:       gi|300712983|ref|YP_003738795.1|  [L=149]
Description: hypothetical protein HacjB3_18308 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0013   16.8   0.0     0.0014   16.7   0.0    1.0  1  V_ATPase_I       V-type ATPase 116kDa subunit family
     0.0046   16.9   0.4     0.0067   16.4   0.4    1.3  1  GvpG             Gas vesicle protein G
     0.0072   16.0   0.1      0.012   15.4   0.1    1.4  1  SHOCT            Short C-terminal domain
  ------ inclusion threshold ------
      0.086   13.7   2.5       0.27   12.2   0.0    2.2  2  EphA2_TM         Ephrin type-A receptor 2 transmembrane domai
       0.13   12.3   3.9        1.9    8.4   0.0    2.1  2  Spore_III_AF     Stage III sporulation protein AF (Spore_III_
       0.14   11.0   3.2       0.15   10.8   3.0    1.3  1  Anoctamin        Calcium-activated chloride channel
       0.48    9.5   4.8       0.66    9.0   4.8    1.1  1  ABC2_membrane_3  ABC-2 family transporter protein
          1    9.4   7.5       0.13   12.3   2.9    1.7  2  DUF997           Protein of unknown function (DUF997)


Domain annotation for each model (and alignments):
>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.1e-07    0.0014     567     653 ..       3     119 ..       1     149 [] 0.63

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.1e-07
                        V_ATPase_I 567 iyKWlvdweaekekapsllntlinmflskgkv............keeelyegqetvqvvLlllalvcvpvlllvkPl 631
                                       i KW+ +w ++ ++ + ll +l+ m++  + v               el +  + v   L +l l+ +p+ llv+Pl
  gi|300712983|ref|YP_003738795.1|   3 ISKWVPNWIQSLPRWAVLLSILLGMLVVMTVVstilrlffavvaAGVELGSVTAGVIAGLSMLLLMFIPIVLLVRPL 79 
                                       78******998898999999999999998888777777777776555677789999999****************** PP

                        V_ATPase_I 632 ilklkhkkkkkkkekkkeeee..................e 653
                                       + +++++ ++ +ke+++ ++                   e
  gi|300712983|ref|YP_003738795.1|  80 LNNKQKTDTTGDKESNSIQRLrkqyvngdiseeifetrlE 119
                                       *999988877666555444434444444433333222210 PP

>> GvpG  Gas vesicle protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4     3e-06    0.0067      37      64 ..      97     124 ..      80     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3e-06
                              GvpG  37 LaaLqqeLdaGeIdeeeFdrrEeelLdr 64 
                                       + +L ++  +G+I+ee F+ r e+lLd 
  gi|300712983|ref|YP_003738795.1|  97 IQRLRKQYVNGDISEEIFETRLEQLLDE 124
                                       67899*********************96 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   5.2e-06     0.012       3      28 .]      97     122 ..      95     122 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.2e-06
                             SHOCT   3 LekLkeLyarGeIteEEFeakKakLL 28 
                                       +++L++ y +G I+eE Fe++ ++LL
  gi|300712983|ref|YP_003738795.1|  97 IQRLRKQYVNGDISEEIFETRLEQLL 122
                                       89*********************998 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   4.2       2.9   6.5e+03       3      20 ..      21      38 ..      17      46 .. 0.58
   2 ?   12.2   0.0   0.00012      0.27       2      57 ..      55     105 ..      54     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.9
                          EphA2_TM  3 aaavaglvllvilvilvl 20
                                      +++++g+++++++v ++l
  gi|300712983|ref|YP_003738795.1| 21 LSILLGMLVVMTVVSTIL 38
                                      445555555555554444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00012
                          EphA2_TM   2 iaaavaglvllvilvilvlvlvrrrsknrkqksdlkskeekkeeensgkkglktYv 57 
                                       +a+++agl +l+++ i +++lv r   n+kqk+d+    ++ +e+ns ++  k Yv
  gi|300712983|ref|YP_003738795.1|  55 TAGVIAGLSMLLLMFIPIVLLV-RPLLNNKQKTDT----TGDKESNSIQRLRKQYV 105
                                       68999*******9777777777.777777777763....22222222222577777 PP

>> Spore_III_AF  Stage III sporulation protein AF (Spore_III_AF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   1.5     0.015        34      26      43 ..      24      41 ..      21      53 .. 0.87
   2 ?    8.4   0.0   0.00087       1.9      25      92 ..      58     122 ..      56     144 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.015
                      Spore_III_AF 26 vlGLllilailsPvlsll 43
                                       lG+l++++++s +l+l+
  gi|300712983|ref|YP_003738795.1| 24 LLGMLVVMTVVSTILRLF 41
                                      69**************99 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00087
                      Spore_III_AF  25 lvlGLllilailsPvlsllnkdldlelaaesesleeeleeikeegeelkeenkkealeeyeqrlekqi 92 
                                       +++GL ++l++  P++ l+++ l+ +++  +++ ++e+++i++  +++  +n +   e +e rle+ +
  gi|300712983|ref|YP_003738795.1|  58 VIAGLSMLLLMFIPIVLLVRPLLNNKQKT-DTTGDKESNSIQRLRKQY--VNGDISEEIFETRLEQLL 122
                                       789****************9888888744.555555555555555555..555556677777777655 PP

>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.0   6.8e-05      0.15     108     175 ..       4      69 ..       1     100 [. 0.67

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.8e-05
                         Anoctamin 108 efyyppwkrrlfrllvslplvllliclavvgvlilrclalqelvssvkellsflptvlnlvlililne 175
                                        + +p+w + l+r+ v l+++l ++++++v+ +ilr +  ++++  v+ l s+++ v+  + +l+l +
  gi|300712983|ref|YP_003738795.1|   4 SKWVPNWIQSLPRWAVLLSILLGMLVVMTVVSTILRLFF-AVVAAGVE-LGSVTAGVIAGLSMLLLMF 69 
                                       56789*************999877666666666666444.33444443.5556665555554444432 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.8   0.00029      0.66     198     266 ..      13      83 ..       9      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00029
                   ABC2_membrane_3 198 sgvsplqywlskilgdflvyllqlllilll....afglgipfgnlgl.llllfllfglayialgyllsslfkns 266
                                       s + +++ +ls +lg+++v+ +++ ++ l+    a g  ++ g++ + ++  + + +l++i++++l+  l +n 
  gi|300712983|ref|YP_003738795.1|  13 S-LPRWAVLLSILLGMLVVMTVVSTILRLFfavvAAG--VELGSVTAgVIAGLSMLLLMFIPIVLLVRPLLNNK 83 
                                       5.8899*****************99885533533455..99997765377999999********9998887765 PP

>> DUF997  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.9   5.7e-05      0.13      36      68 ..      10      43 ..       2      47 .. 0.86
   2 ?   -1.4   0.2       1.1   2.5e+03      50      64 ..      63      77 ..      57      82 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.7e-05
                            DUF997 36 yilglPlWff.lscillpilfivlvillvkfvFk 68
                                      +i  lP W + ls++l++++++++v  +++++F 
  gi|300712983|ref|YP_003738795.1| 10 WIQSLPRWAVlLSILLGMLVVMTVVSTILRLFFA 43
                                      6789****76279*******************96 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
                            DUF997 50 llpilfivlvillvk 64
                                       +++l+++ ++llv+
  gi|300712983|ref|YP_003738795.1| 63 SMLLLMFIPIVLLVR 77
                                      344555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1346  (0.0750739); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1057.16
//
Query:       gi|300712984|ref|YP_003738796.1|  [L=638]
Description: beta-lactamase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-57  192.8   2.8    8.9e-57  192.8   2.8    1.5  2  Beta-lactamase  Beta-lactamase
  ------ inclusion threshold ------
        0.1   12.5   0.4        7.9    6.4   0.2    2.5  2  SH3_19          Myosin X N-terminal SH3 domain


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.8   2.8   9.9e-61   8.9e-57       9     319 ..       5     314 ..       1     322 [. 0.87
   2 ?   -3.4   0.1      0.48   4.3e+03     216     228 ..     500     530 ..     468     547 .. 0.45

  Alignments for each domain:
  == domain 1  score: 192.8 bits;  conditional E-value: 9.9e-61
                                       HHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTSTT CS
                    Beta-lactamase   9 maqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPe 85 
                                       + +g+i G+ v vv+ g++vl+kg+G  +++gg+ v a  +fri+S+tK+++++a++ql+e+Gk+d  + ++ yl  
  gi|300712984|ref|YP_003738796.1|   5 VNNGDIVGATVTVVHSGETVLTKGYGQTEANGGESVGATMPFRIGSITKPVVWTAAMQLIEAGKIDPQEDIQAYLDS 81 
                                       456789*********************************************************************** PP

                                       CTTGGGTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTHHHHHHHHHHSBSSSS..TTSCEE-SHHHHHHHHHHHHHHH CS
                    Beta-lactamase  86 fagpgkgkiTlrdLltHtsGlpdlfasdlleeaaadaaellralatlppkya..pGtkwgYsntgygllgellekvt 160
                                          pg ++iT+++L+tHt+G+ +    +l  + ++++++l  +l++++p+    pG+ ++Ysn+g  l+g+++++vt
  gi|300712984|ref|YP_003738796.1|  82 VSVPGNEPITMANLATHTAGFEER-NQGLWVSSPDKRRSLPGVLKAEQPAQVrpPGETFSYSNYGSALAGQVIAEVT 157
                                       *********************888.44444444445578888888888876666*********************** PP

                                       TSHHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHHHHHHH CS
                    Beta-lactamase 161 grsleqllreeilrpLgmkdtelgppesgdprdaagytgngpearappanlpaeaegagglistardlarflglale 237
                                       g++l+ ++re+i++pL+m   ++++p++  + + +++  +g   + +++ l  e  +ag + ++a d+ rf++ +l+
  gi|300712984|ref|YP_003738796.1| 158 GQKLGVYIREHIFEPLEMDTASIAQPADPSAIQGYTA-LAGS--PTVAPGLALELWPAGSMTASAVDMSRFMRAHLA 231
                                       *************************999988888888.3333..33333333344499**************88888 PP

                                       CCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCHTEEEEEEE...STEEEEEEEECGGTEEEEEEESB CS
                    Beta-lactamase 238 gglllsaetlaqltaklssgttrpagiraglglGwvladktgapgtfghtG...ggygtyvfvdpeanlvvavltnr 311
                                       + ++ ++       ++++       +  +g+g+Gw  + +++  +t++h G   g + + ++++p+a+l+++v  n+
  gi|300712984|ref|YP_003738796.1| 232 NAETGERGLSLDVVTRMREQWFTHHPAVDGVGFGWIETAYGN-VQTLWHNGaipGSFYSHLVLVPDADLGLFVSYNT 307
                                       8888888888888888888888888888999****9999999.6********************************* PP

                                       CSSHHHHH CS
                    Beta-lactamase 312 dppnedaa 319
                                       d+++e aa
  gi|300712984|ref|YP_003738796.1| 308 DTGAE-AA 314
                                       *9844.33 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.48
                                       C..................TTTBEEEEHHHH CS
                    Beta-lactamase 216 e..................gagglistardl 228
                                       +                  + +g +s+ + l
  gi|300712984|ref|YP_003738796.1| 500 GesdtaansadiistddslAKAGERSMSNRL 530
                                       0222233222222233333334444444444 PP

>> SH3_19  Myosin X N-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2   0.00088       7.9      10      34 ..       7      31 ..       5      40 .. 0.88
   2 ?    3.3   0.0    0.0083        75      29      41 ..     268     280 ..     264     282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00088
                            SH3_19 10 keqllPstVsscddgsvvlttdYGe 34
                                      +++ + +tV+++  g+ vlt  YG+
  gi|300712984|ref|YP_003738796.1|  7 NGDIVGATVTVVHSGETVLTKGYGQ 31
                                      6777889*****************9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0083
                            SH3_19  29 ttdYGevitlkqe 41 
                                       +t YG+v+tl+ +
  gi|300712984|ref|YP_003738796.1| 268 ETAYGNVQTLWHN 280
                                       89********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4597.33
//
Query:       gi|300712985|ref|YP_003738797.1|  [L=66]
Description: transcription regulator-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-12   45.7   0.0    5.5e-12   45.6   0.0    1.1  1  HTH_3           Helix-turn-helix
    5.6e-10   39.4   0.1      7e-10   39.1   0.1    1.0  1  HTH_31          Helix-turn-helix domain
    5.5e-05   23.1   0.0      6e-05   23.0   0.0    1.1  1  HTH_19          Helix-turn-helix domain
    0.00065   20.1   0.0     0.0008   19.8   0.0    1.1  1  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0043   16.8   0.0     0.0057   16.4   0.0    1.2  1  HTH_23          Homeodomain-like domain
     0.0052   16.6   0.2     0.0056   16.5   0.2    1.1  1  HTH_25          Helix-turn-helix domain
     0.0071   16.3   0.1     0.0099   15.8   0.1    1.3  1  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.3   0.3      0.016   14.7   0.3    1.3  1  Sigma70_r4      Sigma-70, region 4
      0.017   15.0   0.0       0.02   14.8   0.0    1.3  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.022   14.5   0.1      0.034   13.9   0.1    1.3  1  HTH_38          Helix-turn-helix domain
      0.029   14.7   0.0      0.033   14.5   0.0    1.1  1  KORA            TrfB plasmid transcriptional repressor
      0.057   13.5   0.2      0.086   13.0   0.2    1.3  1  HTH_28          Helix-turn-helix domain
      0.074   12.7   0.1       0.15   11.7   0.1    1.5  2  CENP-B_N        CENP-B N-terminal DNA-binding domain
      0.089   12.4   0.1       0.13   11.8   0.1    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.095   12.7   0.0       0.15   12.0   0.0    1.3  1  HTH_36          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   4.6e-15   5.5e-12       1      50 [.       5      54 ..       5      59 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 4.6e-15
                                      HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTS CS
                             HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgv 50
                                      l+e+R q g sq++LA+++Gv+r+ti+ iE+ +  Psle ++ la+ +++
  gi|300712985|ref|YP_003738797.1|  5 LRERRGQTGESQADLAAAIGVTRQTINSIERQRYDPSLELAFTLARHYDC 54
                                      7999999999*************************************998 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1   5.8e-13     7e-10       6      55 ..       5      53 ..       4      57 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 5.8e-13
                            HTH_31  6 LralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralg 55
                                      Lr++R + G sq+++A+++gv++ t++ +E+ r + ps++    lar ++
  gi|300712985|ref|YP_003738797.1|  5 LRERRGQTGESQADLAAAIGVTRQTINSIERQRYD-PSLELAFTLARHYD 53
                                      899*******************************7.***********997 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     5e-08     6e-05       4      52 ..       5      52 ..       4      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5e-08
                            HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaeal 52
                                      L+e R + g +q++la  +g++r  i+ iE  ++ +ps el   +a+ +
  gi|300712985|ref|YP_003738797.1|  5 LRERRGQTGESQADLAAAIGVTRQTINSIERQRY-DPSLELAFTLARHY 52
                                      7999**************************9998.***99988888766 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   6.7e-07    0.0008       2      60 ..       5      62 ..       4      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 6.7e-07
                            HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLley 60
                                      Lre   + g ++++La ++g++++t++ +  ++   +sl+   ++++  +c ++D++ +
  gi|300712985|ref|YP_003738797.1|  5 LRERRGQTGESQADLAAAIGVTRQTINSIERQR-YDPSLELAFTLARHYDCIIEDIFNP 62
                                      77777888889*********************9.6*********************976 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.8e-06    0.0057      16      41 ..      11      38 ..       4      44 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.8e-06
                            HTH_23 16 e.GlsvreIAreLgvsrrTvyrw.lkry 41
                                      + G s+++ A++ gv+r+T+  + ++ry
  gi|300712985|ref|YP_003738797.1| 11 QtGESQADLAAAIGVTRQTINSIeRQRY 38
                                      369******************8868888 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   4.7e-06    0.0056       2      37 ..       5      40 ..       4      52 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.7e-06
                                      HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TT CS
                            HTH_25  2 LraaRearglsleevaketkIrkdylealEeddfda 37
                                      Lr++R + g s  ++a+ + +  +++  +E+ ++d 
  gi|300712985|ref|YP_003738797.1|  5 LRERRGQTGESQADLAAAIGVTRQTINSIERQRYDP 40
                                      9********************************985 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   8.3e-06    0.0099      23      41 ..      15      33 ..       4      36 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.3e-06
                                      HHHHHHHHTTSSHHHHHHH CS
                         HTH_Crp_2 23 tqeelAsmlGltretvsri 41
                                      +q++lA+ +G+tr+t++ i
  gi|300712985|ref|YP_003738797.1| 15 SQADLAAAIGVTRQTINSI 33
                                      89**************976 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3   1.3e-05     0.016      19      43 ..      12      36 ..       5      39 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-05
                                      TT--HHHHHHHHTS-HHHHHHHHHH CS
                        Sigma70_r4 19 eglTleEIgerlgiSrerVrqiekr 43
                                       g +++++++  g++r ++ +ie++
  gi|300712985|ref|YP_003738797.1| 12 TGESQADLAAAIGVTRQTINSIERQ 36
                                      6789*******************96 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.7e-05      0.02      10      28 ..      15      33 ..       8      53 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
                    YdaS_antitoxin 10 gqkaLAealgvsqqaVsqW 28
                                      +q+ LA a+gv++q+++  
  gi|300712985|ref|YP_003738797.1| 15 SQADLAAAIGVTRQTINSI 33
                                      89**************987 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.9e-05     0.034      18      38 ..      11      31 ..       4      33 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-05
                            HTH_38 18 aeGlslreIArrLgrspsTIs 38
                                      + G+s+++ A  +g+ ++TI+
  gi|300712985|ref|YP_003738797.1| 11 QTGESQADLAAAIGVTRQTIN 31
                                      78******************6 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.7e-05     0.033      31      57 ..      13      39 ..      12      58 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-05
                              KORA 31 gkkqadvatelgltkqavsqavkrvwa 57
                                      g++qad+a+++g+t+q ++ ++++ ++
  gi|300712985|ref|YP_003738797.1| 13 GESQADLAAAIGVTRQTINSIERQRYD 39
                                      789****************99987665 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   7.2e-05     0.086      12      34 ..      13      35 ..       5      38 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.2e-05
                            HTH_28 12 GhsvreaArelgisrrtvyrWik 34
                                      G+s++++A++ g++r+t+ +  +
  gi|300712985|ref|YP_003738797.1| 13 GESQADLAAAIGVTRQTINSIER 35
                                      88***************977655 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00012      0.15      21      42 ..      12      33 ..       8      38 .. 0.88
   2 ?   -3.1   0.0       5.3   6.3e+03      28      34 ..      48      54 ..      47      55 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                                      CTT-HHHHHHHHT--CCHHHHH CS
                          CENP-B_N 21 egeSkaelarrfnvpestlsdi 42
                                       geS a+la  ++v ++t+  i
  gi|300712985|ref|YP_003738797.1| 12 TGESQADLAAAIGVTRQTINSI 33
                                      699****************988 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.3
                                      HHHHHT- CS
                          CENP-B_N 28 larrfnv 34
                                      lar + +
  gi|300712985|ref|YP_003738797.1| 48 LARHYDC 54
                                      8999987 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00011      0.13      19      36 ..      15      32 ..      10      33 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                            HTH_24 19 sqreLAerlglSpstvnr 36
                                      sq++LA ++g++++t+n 
  gi|300712985|ref|YP_003738797.1| 15 SQADLAAAIGVTRQTINS 32
                                      9***************96 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013      0.15      16      44 ..       7      32 ..       5      34 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                            HTH_36 16 sfanknggcfpsqetlakrlglsknTvsr 44
                                         +++g+   sq++la++ g+ ++T+ +
  gi|300712985|ref|YP_003738797.1|  7 ERRGQTGE---SQADLAAAIGVTRQTINS 32
                                      56688899...****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 487.60
//
Query:       gi|300712986|ref|YP_003738798.1|  [L=74]
Description: hypothetical protein HacjB3_18323 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0013   18.9   0.2     0.0028   17.8   0.2    1.6  1  DUF2178   Predicted membrane protein (DUF2178)
  ------ inclusion threshold ------
      0.062   12.7   1.2      0.066   12.7   1.2    1.0  1  DUF373    Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> DUF2178  Predicted membrane protein (DUF2178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   3.1e-07    0.0028      48      93 ..       2      45 ..       1      61 [. 0.74

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.1e-07
                           DUF2178 48 eDERlariaekAsrktlqillfliallgvvlivlksdfpeytrvgf 93
                                       DER+  i   A+++t++++  l+al+   ++vl++   +  ++ +
  gi|300712986|ref|YP_003738798.1|  2 WDERDDEIHRHAASRTVTLFGWLAALVYPTIVVLDAL--GLLEFPL 45
                                      5*************************98888885543..3444444 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.2   7.3e-06     0.066     157     204 ..      17      71 ..       9      74 .] 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.3e-06
                            DUF373 157 iLvplGl.llliyallll......lglpelalaiillllGlylllrGfgldelle 204
                                       ++++ G+ + l+y+ +++      l++p + + i ++++ +yl++ Gf+l+++++
  gi|300712986|ref|YP_003738798.1|  17 TVTLFGWlAALVYPTIVVldalglLEFPLWLVPISAFIILFYLVYGGFQLYDRFA 71 
                                       455566515688998888899999999************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 571.75
//
Query:       gi|300712987|ref|YP_003738799.1|  [L=131]
Description: hypothetical protein HacjB3_18328 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-06   25.9   0.9    0.00016   21.8   0.0    2.2  2  DUF2178   Predicted membrane protein (DUF2178)
  ------ inclusion threshold ------
      0.053   13.4   0.5      0.075   12.9   0.5    1.2  1  TPD       Protein of unknown function TPD sequence-motif
        3.9    7.4   8.6       0.63    9.9   1.3    2.7  3  60KD_IMP  60Kd inner membrane protein


Domain annotation for each model (and alignments):
>> DUF2178  Predicted membrane protein (DUF2178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.6e-08   0.00016       6      73 ..      23      86 ..      15      96 .. 0.66
   2 ?    2.8   0.2     0.021   1.3e+02      61      83 ..     107     129 ..      99     131 .] 0.77

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.6e-08
                           DUF2178  6 avialvglgiwaaignvllaviavaaGvllaillkkkve.evveDERlariaekAsrktlqillflial 73
                                      +++ l+g+ +    ++ +++v++  +G +  +l+  ++    + DER+  i+ kAs  tl i++f+  l
  gi|300712987|ref|YP_003738799.1| 23 ILGLLIGVYF----NQFVAGVLLYWVGFFG-MLSVWQLSpVLLYDERDIAIERKASDWTLSIFAFVLVL 86
                                      4444444444....4444444544555444.3444444425689*******************999776 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.021
                           DUF2178  61 rktlqillfliallgvvlivlks 83 
                                       + ++ +l++++++ gv++++l++
  gi|300712987|ref|YP_003738799.1| 107 HGAMWVLVTVYIVFGVIYTILRQ 129
                                       66788888888888888888775 PP

>> TPD  Protein of unknown function TPD sequence-motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.5   1.3e-05     0.075     105     127 ..      31      53 ..      27      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
                               TPD 105 YvnrfGpGlviYwfGyvdelese 127
                                       Y n+f  G+ +Yw+G+  +l++ 
  gi|300712987|ref|YP_003738799.1|  31 YFNQFVAGVLLYWVGFFGMLSVW 53 
                                       9****************999875 PP

>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.3   0.00011      0.63     126     151 ..      19      44 ..       1      59 [. 0.68
   2 ?    0.2   0.0       0.1     6e+02     125     148 ..      71      94 ..      48      94 .. 0.78
   3 ?    0.5   0.4     0.081   4.9e+02      68     160 ..     107     128 ..     102     131 .] 0.51

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
                          60KD_IMP 126 mmlyvmplmilffslsfpaglvlYwl 151
                                       ++  ++ l+i++ +++f ag++lYw+
  gi|300712987|ref|YP_003738799.1|  19 LVAGILGLLIGVYFNQFVAGVLLYWV 44 
                                       3445678899***************8 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.1
                          60KD_IMP 125 kmmlyvmplmilffslsfpaglvl 148
                                       k   + + ++ ++++l  p+gl+l
  gi|300712987|ref|YP_003738799.1|  71 KASDWTLSIFAFVLVLGAPSGLIL 94 
                                       456688899999999999999976 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.081
                          60KD_IMP  68 aGclplLiqlpifialyrvlrslasfwikdLsapdlpillavttflqqklskskkmqkmmlyvmplmilffslsfpa 144
                                        G + +L+++ i+++                                                              
  gi|300712987|ref|YP_003738799.1| 107 HGAMWVLVTVYIVFG-------------------------------------------------------------- 121
                                       555555555555555.............................................................. PP

                          60KD_IMP 145 glvlYwlvsnllsiaq 160
                                                 +++i+ 
  gi|300712987|ref|YP_003738799.1| 122 ---------VIYTILR 128
                                       .........4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 992.62
//
Query:       gi|300712988|ref|YP_003738800.1|  [L=371]
Description: hypothetical protein HacjB3_18333 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2555.38
//
Query:       gi|300712989|ref|YP_003738801.1|  [L=280]
Description: polysaccharide deacetylase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-07   31.7   0.4    3.4e-06   27.0   0.2    2.6  3  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2   1.9e-10   3.4e-06      20      73 ..       3      60 ..       1      84 [. 0.89
   2 ?    1.7   0.0     0.013   2.3e+02      75     110 ..     134     168 ..     127     173 .. 0.85
   3 ?   -1.6   0.0      0.13   2.3e+03      43      67 ..     214     237 ..     205     257 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.9e-10
                                      CHHHHHHHHHHCT--EEEEE-HHHHCH-....HHHHHHHHHTTEEEEE--SS--EGGG CS
                   Polysacc_deac_1 20 ntteilpvLkkykvkatffvigglvedy....pdevremaasGveignHtinhsnlkr 73
                                       +t++lp+ ++ +v+at  +++++v++      +e+ e++++G+ei++Ht  h  l +
  gi|300712989|ref|YP_003738801.1|  3 DYTQALPAHEEFDVPATTGIVSEWVGRTdymgTEELDELVDAGWEIASHTKEHRPLAA 60
                                      589*********************99888889*********************99854 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.013
                                       HHHHHHHHHHHHHHHHHHHHS----EEE-GGGEE-H CS
                   Polysacc_deac_1  75 seeevrreierakdalrkalgreprlfryPygsasa 110
                                        +e++ + ++ +kd l++ +g ++ ++ +Py ++s 
  gi|300712989|ref|YP_003738801.1| 134 PAETMHEALGDSKDTLEE-MGYDVSTLLAPYDAYSG 168
                                       5678999999*****999.89999999999999886 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.13
                                       HHCH-HHHHHHHHHTTEEEEE--SS CS
                   Polysacc_deac_1  43 lvedypdevremaasGveignHtin 67 
                                        v++  de+ e a  G  +g+Ht++
  gi|300712989|ref|YP_003738801.1| 214 AVKQDLDEIAEEALLG-VVGAHTVK 237
                                       4555566777777666.48999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.31s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1897.71
//
Query:       gi|300712990|ref|YP_003738802.1|  [L=93]
Description: hypothetical protein HacjB3_18343 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 683.44
//
Query:       gi|300712991|ref|YP_003738803.1|  [L=101]
Description: hypothetical protein HacjB3_18348 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 774.45
//
Query:       gi|300712992|ref|YP_003738804.1|  [L=139]
Description: hypothetical protein HacjB3_18353 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.05   13.2   0.3      0.073   12.7   0.3    1.3  1  HTH_24    Winged helix-turn-helix DNA-binding
      0.092   11.8   0.0       0.12   11.4   0.0    1.1  1  DUF3549   Protein of unknown function (DUF3549)
       0.12   13.0   0.0       0.14   12.8   0.0    1.2  1  RPA_C     Replication protein A C terminal


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   1.2e-05     0.073       6      47 ..      62     103 ..      57     103 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
                            HTH_24   6 rkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47 
                                       ++++e+++++   s++e A+ ++  + +v++ l rL + G+I
  gi|300712992|ref|YP_003738804.1|  62 LDLIEAIRREKPASINETARVVNRDVKNVHEELSRLAQLGII 103
                                       7899*************************************9 PP

>> DUF3549  Protein of unknown function (DUF3549)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.9e-05      0.12      49      73 ..      95     124 ..      82     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.9e-05
                           DUF3549  49 qkhAwlaivfwqkn.eskqpyiWf....lk 73 
                                        + A+l+i+f++++ +sk+p++Wf    ++
  gi|300712992|ref|YP_003738804.1|  95 SRLAQLGIIFFEEDgQSKRPVVWFdeliIN 124
                                       578********99889999****9444445 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.3e-05      0.14      33      98 ..      40     104 ..      10     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
                                       XXXXXXXXXXXX.XSXHHHHHHHHHHHH.SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHHTTSEE CS
                             RPA_C  33 galsgnqaklankgltalaqqvlnlikqspeseeGvhvdeiaqklrlsvndvkqavdeLsneGiiY 98 
                                       ++ ++ + ++  + +  l+ +vl+li   +++e+  +++e a+ ++ +v++v + +  L++ Gii+
  gi|300712992|ref|YP_003738804.1|  40 NSTPTLSFSSYDDLMGTLTPRVLDLIEA-IRREKPASINETARVVNRDVKNVHEELSRLAQLGIIF 104
                                       3444444444447799999********9.************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1007.44
//
Query:       gi|300712993|ref|YP_003738805.1|  [L=105]
Description: hypothetical protein HacjB3_18358 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 820.75
//
Query:       gi|300712994|ref|YP_003738806.1|  [L=66]
Description: hypothetical protein HacjB3_18363 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0012   19.1   2.0     0.0015   18.8   2.0    1.1  1  DUF456           Protein of unknown function (DUF456)
      0.006   16.6   2.4      0.006   16.6   2.4    1.0  1  CRPA             Chlamydia 15 kDa cysteine-rich outer membran
  ------ inclusion threshold ------
      0.014   15.4   2.4       0.02   14.9   2.4    1.3  1  DUF2892          Protein of unknown function (DUF2892)
       0.15   10.6   0.7       0.15   10.6   0.7    1.0  1  DUF5357          Family of unknown function (DUF5357)
        0.2   12.2   2.4         13    6.3   0.3    2.1  2  DUF3899          Domain of unknown function (DUF3899)
        2.5    8.4   6.1        8.3    6.8   6.1    1.7  1  DUF3040          Protein of unknown function (DUF3040)
        7.6    6.6   7.8        2.3    8.2   1.5    2.1  2  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> DUF456  Protein of unknown function (DUF456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.0     6e-07    0.0015      24      78 ..       8      61 ..       2      64 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6e-07
                            DUF456 24 faelgwlflavllvlallglvldylapalgakraGaskrgligaivGaivGffll 78
                                       +++++++lav++vl+l++ ++ +l +  +    G+ +r  i++++Ga++G ++l
  gi|300712994|ref|YP_003738806.1|  8 QSTIEMIVLAVMGVLFLVVSGF-LLTQTPAISSSGGRNRLFIAGVIGAVIGSVFL 61
                                      3558999999999999999887.6778889999******************9876 PP

>> CRPA  Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   2.4   2.3e-06     0.006      56     109 ..       4      62 ..       1      66 [] 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.3e-06
                              CRPA  56 skllqsrafkitlvvlGil.Lviag..lallfilqaqlganafyl..liPaviGlvkll 109
                                         + qs+   i l+v+G+l Lv+ g  l+ +  ++++ g n +++  +i aviG v l 
  gi|300712994|ref|YP_003738806.1|   4 NTMNQSTIEMIVLAVMGVLfLVVSGflLTQTPAISSSGGRNRLFIagVIGAVIGSVFLY 62 
                                       5677999999*******972556663344456799999*****99888******99765 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   2.4   7.8e-06      0.02       3      49 ..       6      66 .]       1      66 [] 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.8e-06
                           DUF2892  3 kNvgtldRilrivvGlvllllallglsggw..............gwllglvGavllltglt 49
                                       N +t++ i+ +v+G+++l+++ + l++ +              g++ +++G v+l +++t
  gi|300712994|ref|YP_003738806.1|  6 MNQSTIEMIVLAVMGVLFLVVSGFLLTQTPaisssggrnrlfiaGVIGAVIGSVFLYESIT 66
                                      4999************9999888877666689********888888888888888888876 PP

>> DUF5357  Family of unknown function (DUF5357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   5.9e-05      0.15      48      96 ..      13      63 ..       2      66 .] 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.9e-05
                           DUF5357 48 kdiialvgWlFliagtawyttddplrvp..gtflpvgalitgflvsvfafg 96
                                        ++a++g lFl+++  ++t+   ++     + l+++ +i +++ svf++ 
  gi|300712994|ref|YP_003738806.1| 13 MIVLAVMGVLFLVVSGFLLTQTPAISSSggRNRLFIAGVIGAVIGSVFLYE 63
                                      35789**********9999988888887434789********999***986 PP

>> DUF3899  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3    0.0052        13      61      83 ..       9      31 ..       2      32 .. 0.75
   2 ?    6.2   0.1    0.0057        15       2      18 ..      44      60 ..      43      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0052
                           DUF3899 61 skkstrplliiGlllivlsivll 83
                                      s+  +  l ++G+l++v+s +ll
  gi|300712994|ref|YP_003738806.1|  9 STIEMIVLAVMGVLFLVVSGFLL 31
                                      66667778889999999998876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0057
                           DUF3899  2 NilFllglllliigill 18
                                      N lF++g++  +ig ++
  gi|300712994|ref|YP_003738806.1| 44 NRLFIAGVIGAVIGSVF 60
                                      889**********9876 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.1    0.0032       8.3      41      78 ..       6      57 ..       2      63 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0032
                           DUF3040 41 lrrlavlavllfvaGllllvlG.vaaaa.............vvlgvvGfvvm 78
                                      + + ++ +++l+v+G+l+lv+  +++ +              + gv+G+v+ 
  gi|300712994|ref|YP_003738806.1|  6 MNQSTIEMIVLAVMGVLFLVVSgFLLTQtpaisssggrnrlFIAGVIGAVIG 57
                                      4556788899999999987775566666688888888888777777777765 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.5   0.00091       2.3      16      34 ..      12      30 ..      10      33 .. 0.90
   2 ?    2.0   0.5     0.081   2.1e+02      22      35 ..      48      61 ..      46      64 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00091
                                      XXXXXXXXXXXXXXXXXXX CS
                   Gram_pos_anchor 16 gnifltaaGllallggllL 34
                                      ++i+l ++G+l l+++++L
  gi|300712994|ref|YP_003738806.1| 12 EMIVLAVMGVLFLVVSGFL 30
                                      799*************999 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.081
                                      XXXXXXXXXXXXXX CS
                   Gram_pos_anchor 22 aaGllallggllLl 35
                                      +aG++ ++ g+++l
  gi|300712994|ref|YP_003738806.1| 48 IAGVIGAVIGSVFL 61
                                      67866666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.54
# Mc/sec: 366.08
//
Query:       gi|300712995|ref|YP_003738807.1|  [L=263]
Description: hypothetical protein HacjB3_18368 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1978.75
//
Query:       gi|300712996|ref|YP_003738808.1|  [L=120]
Description: hypothetical protein HacjB3_18373 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-05   22.4   3.0    0.00013   22.0   3.0    1.2  1  DUF4271      Domain of unknown function (DUF4271)
  ------ inclusion threshold ------
      0.034   13.9   3.9      0.091   12.5   3.9    1.6  1  Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase cha


Domain annotation for each model (and alignments):
>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   3.0   1.5e-08   0.00013      54     175 ..       7     113 ..       2     120 .] 0.88

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.5e-08
                           DUF4271  54 lllltclllglllylllsefgslfgsylassllllliiflilllylllKlllykllgwlFfdkkkirqwifsylsyl 130
                                       l ++  ll+g+ +y++ls                +++ ++  ++y  + ++ +k+  +l ++  + +  i  +   +
  gi|300712996|ref|YP_003738808.1|   7 LAVFCGLLIGFGIYWFLSP--------------DWFVASGTAAVYAGAAYFYFKFDISLLDSAVQFDDRIDRLGYAI 69 
                                       5667777888888888886..............6899999************************************* PP

                           DUF4271 131 sllglllfplvlllvyfplssqillililiillliklllllyksi 175
                                        l+gl++ p++++ +y ++ ++++ ++il++ ++++lll + k  
  gi|300712996|ref|YP_003738808.1|  70 GLFGLCVSPMAFAQYYGQQGTTTIPFVILFMGVIAFLLL-ISKAQ 113
                                       ******************************999999999.87765 PP

>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.9     1e-05     0.091      19      92 ..      11     110 ..       5     119 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1e-05
                                       HHHHHHHHHHHHHTT-HHHHHHHHHIIIIIHHHHHHHHHHHS...........................STTS---- CS
                       Oxidored_q3  19 ilsfvgvaglfillgaeFlallqilvYvGAilvlflFvimll...........................esaeeeep 68 
                                         +++g  ++++l    F+a     vY+GA    f F i+ll                              ++ + 
  gi|300712996|ref|YP_003738808.1|  11 CGLLIGFGIYWFLSPDWFVASGTAAVYAGAAYFYFKFDISLLdsavqfddridrlgyaiglfglcvspmA-FAQYYG 86 
                                       556788888888888999***********************98888888888888888888888776642.233444 PP

                                       TTCHHHHHHHHHHHHHHHHHHHTT CS
                       Oxidored_q3  69 eslsrslalaalligllllallll 92 
                                       ++ +  +++++l++g++ ++ll+ 
  gi|300712996|ref|YP_003738808.1|  87 QQGTTTIPFVILFMGVIAFLLLIS 110
                                       444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 845.79
//
Query:       gi|300712997|ref|YP_003738809.1|  [L=300]
Description: hypothetical protein HacjB3_18378 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-29  101.9   0.1    4.1e-29  101.5   0.1    1.1  1  EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
  ------ inclusion threshold ------
       0.26   10.5   0.1       0.36   10.0   0.1    1.1  1  DUF3881     Domain of unknown function, E. rectale Gene descr


Domain annotation for each model (and alignments):
>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.1   4.5e-33   4.1e-29       1     160 [.     130     285 ..     130     290 .. 0.93

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 4.5e-33
                        EMC3_TMCO1   1 dlvldplirdwvllPivivillvgiltgllsellqkllidkkkmekeqkrekelqkrarelqkngdklklkklekrq 77 
                                       dlvl+pl     llP+ +++++++ l++l+s+ ++  l d+++ ++ ++r ++ q+   +++++gd+ + ++l ++q
  gi|300712997|ref|YP_003738809.1| 130 DLVLGPLAG---LLPFPLLVIVLATLVALVSTGVRRRLLDQEQIDAQKERLQQAQDSLSAARQRGDDAAVERLTNHQ 203
                                       689999999...***************************************************************** PP

                        EMC3_TMCO1  78 eelmedqsemmmdqmkpmivtmipqiliffwlnsffs...gfvvaklpfpltgrfksllqrglesldvrfvssiswY 151
                                       ++lm dq ++m+++++p ++tm++++++f+wl++f+    g +v+  p+ +++   +++    + l+++++++++wY
  gi|300712997|ref|YP_003738809.1| 204 QDLMRDQLGIMKNTFRPLVWTMFVTVPVFLWLSWFVMnpaGAIVTAAPLIPVIDQIVWS----ARLVGPMQMWMVWY 276
                                       ************************************98888888888855555555599....99************ PP

                        EMC3_TMCO1 152 flcsfglsq 160
                                       f++s++++ 
  gi|300712997|ref|YP_003738809.1| 277 FVSSLASNL 285
                                       ****98875 PP

>> DUF3881  Domain of unknown function, E. rectale Gene description (DUF3881)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1     4e-05      0.36     153     193 ..     166     207 ..     151     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4e-05
                           DUF3881 153 dekqeekekeeskkrkkllaaAke.GdeeAiesLtledidty 193
                                       d++q++ +ke+ ++ ++ l+aA++ Gd++A+e Lt ++ d+ 
  gi|300712997|ref|YP_003738809.1| 166 DQEQIDAQKERLQQAQDSLSAARQrGDDAAVERLTNHQQDLM 207
                                       5677788888888888888888744**********9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1065  (0.059401); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2206.03
//
Query:       gi|300712998|ref|YP_003738810.1|  [L=105]
Description: hypothetical protein HacjB3_18383 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.75    9.4   6.8        0.3   10.7   1.3    2.4  2  PetM      PetM family of cytochrome b6f complex subunit 7
        3.4    7.4   8.3        1.1    9.1   3.3    2.0  2  Oleosin   Oleosin
          5    7.6   6.7        5.7    7.5   0.3    2.5  2  DUF202    Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> PetM  PetM family of cytochrome b6f complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.3     5e-05       0.3       6      26 ..      15      35 ..      14      35 .. 0.89
   2 ?    1.0   0.4     0.054   3.2e+02      18      24 ..      48      54 ..      48      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5e-05
                              PetM  6 aAiLcfvLiLVGlAlGFlLLK 26
                                      a++L ++ +++GlA+G+l L+
  gi|300712998|ref|YP_003738810.1| 15 AFVLTITSTILGLAVGYLALR 35
                                      68999999*********9775 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.054
                              PetM 18 lAlGFlL 24
                                      +A+GF+L
  gi|300712998|ref|YP_003738810.1| 48 IAVGFFL 54
                                      79***98 PP

>> Oleosin  Oleosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2     0.048   2.9e+02      22      33 ..      18      29 ..       5      34 .. 0.86
   2 ?    9.1   3.3   0.00018       1.1      25      50 ..      48      73 ..      44      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.048
                           Oleosin 22 ltLagtvigLav 33
                                      lt++ t++gLav
  gi|300712998|ref|YP_003738810.1| 18 LTITSTILGLAV 29
                                      899999999998 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00018
                           Oleosin 25 agtvigLavatPllvlfSPvlvPaai 50
                                      ++    L++ tP+l++  P l+P++ 
  gi|300712998|ref|YP_003738810.1| 48 IAVGFFLVFWTPILLVAGPYLIPLVG 73
                                      5666789****************874 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.3   0.00095       5.7      33      67 ..       8      42 ..       1      43 [. 0.82
   2 ?    2.8   1.5     0.027   1.6e+02      19      59 ..      46      96 ..      45     104 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00095
                            DUF202 33 tgepsalgkilglilivlgiltllvglvrylrrqr 67
                                      ++ +s+++++l ++  +lg+++  ++l+ y+++++
  gi|300712998|ref|YP_003738810.1|  8 PSLQSQIAFVLTITSTILGLAVGYLALRGYWQSRK 42
                                      4556778999*********************9987 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.027
                            DUF202 19 alialglallrffl..................tgepsalgkilglilivlgiltllvgl 59
                                      ++ia+g++l+ f+                             lg i  ++g+l++l+gl
  gi|300712998|ref|YP_003738810.1| 46 LFIAVGFFLV-FWTpillvagpyliplvgpfvY-------GMLGEISRITGLLCILYGL 96
                                      6777777777.4454555555555432222211.......3445556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 774.13
//
Query:       gi|300712999|ref|YP_003738811.1|  [L=157]
Description: transcriptional regulator, ArsR family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-06   28.4   0.0      2e-06   27.6   0.0    1.4  1  HTH_11         HTH domain
    5.4e-06   26.4   0.0    8.8e-06   25.7   0.0    1.3  1  HTH_20         Helix-turn-helix domain
     0.0003   20.6   0.0     0.0005   19.9   0.0    1.3  1  MarR_2         MarR family
    0.00087   19.1   0.0     0.0015   18.3   0.0    1.4  1  TrmB           Sugar-specific transcriptional regulator TrmB
     0.0013   18.3   0.0     0.0039   16.7   0.0    1.9  2  HTH_24         Winged helix-turn-helix DNA-binding
     0.0046   16.8   0.0       0.02   14.7   0.0    2.1  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
     0.0066   16.6   0.0     0.0092   16.1   0.0    1.3  1  FUR            Ferric uptake regulator family
     0.0091   16.0   0.0      0.032   14.3   0.0    2.1  2  HTH_7          Helix-turn-helix domain of resolvase
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.029   14.3   0.0    1.6  2  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.017   14.8   0.0      0.032   14.0   0.0    1.5  1  HTH_DeoR       DeoR-like helix-turn-helix domain
       0.03   14.3   0.0      0.058   13.4   0.0    1.4  1  PadR           Transcriptional regulator PadR-like family
      0.052   13.4   0.0      0.083   12.7   0.0    1.3  1  HTH_IclR       IclR helix-turn-helix domain
        0.1   12.4   0.0       0.26   11.1   0.0    1.7  1  HTH_23         Homeodomain-like domain
       0.15   11.9   0.0       0.25   11.3   0.0    1.4  1  HTH_5          Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.6e-09     2e-06       7      41 ..      62      97 ..      58     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.6e-09
                            HTH_11  7 elLleargp.isgeeLAeeLnvSrrtvrrdIkaLee 41
                                      ++L+e++   +s++eL++  +vS +t++r++++L+e
  gi|300712999|ref|YP_003738811.1| 62 QILIETTTEpMSANELSDACDVSPQTIYRRLEDLNE 97
                                      5566666666************************98 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.9e-09   8.8e-06       3      55 ..      51     102 ..      49     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.9e-09
                                       HHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
                            HTH_20   3 iaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55 
                                       i  +La+++   il +  + e+++a+el +++d+s++t++++L+ L e + + 
  gi|300712999|ref|YP_003738811.1|  51 IGALLADETTQQILIET-TTEPMSANELSDACDVSPQTIYRRLEDLNEYDMIA 102
                                       556899999*******9.*****************************999986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.9e-07    0.0005       9      60 ..      62     110 ..      58     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.9e-07
                                       HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSS CS
                            MarR_2   9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDk 60 
                                       ++L +   +p   ++++el +++++s++++ r+l++L +  ++ ++ +++D+
  gi|300712999|ref|YP_003738811.1|  62 QILIETTTEP---MSANELSDACDVSPQTIYRRLEDLNEYDMIAEEVNLDDG 110
                                       7899999999...9************************99999999888885 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.2e-06    0.0015      20      64 ..      69     119 ..      62     121 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.2e-06
                                       HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST......TTEEEE CS
                              TrmB  20 lgpatadeiaeelgvprskvYevLrsLedkGlVerekgr......pklYra 64 
                                        +p++a+e++ + +v+ +++Y+ L+ L + +++  e         +k+Y a
  gi|300712999|ref|YP_003738811.1|  69 TEPMSANELSDACDVSPQTIYRRLEDLNEYDMIAEEVNLddgghhYKVYTA 119
                                       689******************************988544677777777766 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     3e-06    0.0039      17      45 ..      71      99 ..      57     102 .. 0.81
   2 ?   -1.5   0.0       1.5   1.9e+03      23      30 ..     101     108 ..      99     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3e-06
                            HTH_24 17 risqreLAerlglSpstvnrrlkrLeeeG 45
                                       +s +eL++++++Sp+t+ rrl+ L e  
  gi|300712999|ref|YP_003738811.1| 71 PMSANELSDACDVSPQTIYRRLEDLNEYD 99
                                      5899*******************997755 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
                            HTH_24  23 LAerlglS 30 
                                       +Ae+++l 
  gi|300712999|ref|YP_003738811.1| 101 IAEEVNLD 108
                                       8*****96 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-05      0.02      18      41 ..      72      95 ..      57      96 .. 0.92
   2 ?   -1.1   0.0       1.4   1.8e+03      23      30 ..     101     108 ..      98     110 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
                     HTH_AsnC-type 18 isyaeLAervGlSestvlrRvrrL 41
                                      +s  eL++++ +S++t+ rR++ L
  gi|300712999|ref|YP_003738811.1| 72 MSANELSDACDVSPQTIYRRLEDL 95
                                      8999****************9866 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.4
                     HTH_AsnC-type  23 LAervGlS 30 
                                       +Ae+v+l+
  gi|300712999|ref|YP_003738811.1| 101 IAEEVNLD 108
                                       9****996 PP

>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.2e-06    0.0092      35      77 ..      78     120 ..      58     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.2e-06
                                       HTTTT--HHHHHHHHHHHHHTTSE.EEEEETTSEEEEEESSSSS CS
                               FUR  35 eedpeislaTVYrtLklleeaglv.kelefedgesryelakkeh 77 
                                       ++  ++s  T+Yr L+ l+e +++ +e++++dg  +y++ +  +
  gi|300712999|ref|YP_003738811.1|  78 SDACDVSPQTIYRRLEDLNEYDMIaEEVNLDDGGHHYKVYT-AT 120
                                       567899****************994579*********9985.44 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.5e-05     0.032      19      44 ..      69      94 ..      50      95 .. 0.86
   2 ?   -2.8   0.0       5.5     7e+03      27      33 ..     101     107 ..     100     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
                                      TTT--STTTSSSS---SSSS--SS-- CS
                             HTH_7 19 eeGisiskIAkevnisRsTvYRylad 44
                                       e++s++++ ++ ++s++T+YR l+d
  gi|300712999|ref|YP_003738811.1| 69 TEPMSANELSDACDVSPQTIYRRLED 94
                                      6899******************8876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.5
                                       TSSSS-- CS
                             HTH_7  27 IAkevni 33 
                                       IA+evn+
  gi|300712999|ref|YP_003738811.1| 101 IAEEVNL 107
                                       9***995 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.3e-05     0.029      17      52 ..      67     102 ..      49     109 .. 0.76
   2 ?   -3.3   0.0       7.1   9.1e+03      20      29 ..     135     145 ..     126     147 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.3e-05
                                       EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
                         HTH_Crp_2  17 eielpltqeelAsmlGltretvsrilseLkreglis 52 
                                       + + p++  el++ + ++++t+ r l +L +  +i 
  gi|300712999|ref|YP_003738811.1|  67 TTTEPMSANELSDACDVSPQTIYRRLEDLNEYDMIA 102
                                       34569************************9998887 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.1
                                       EEHH.HHHHHH CS
                         HTH_Crp_2  20 lplt.qeelAs 29 
                                       l+l+ +e++A+
  gi|300712999|ref|YP_003738811.1| 135 LDLSlREQMAA 145
                                       33332455554 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.5e-05     0.032      15      42 ..      72      99 ..      61     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-05
                          HTH_DeoR 15 lsveelvellgvSeaTiRRDLneLeeqg 42
                                      +s +el++ ++vS++Ti R L+ L e +
  gi|300712999|ref|YP_003738811.1| 72 MSANELSDACDVSPQTIYRRLEDLNEYD 99
                                      7889*************88888887755 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.5e-05     0.058      22      66 ..      77     120 ..      73     123 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.5e-05
                                       CSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEES CS
                              PadR  22 lsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlT 66 
                                       ls  + ++s+ ++Y+ L++L + +++++e + ++ g   k+Y+ T
  gi|300712999|ref|YP_003738811.1|  77 LS-DACDVSPQTIYRRLEDLNEYDMIAEEVNLDDGGHHYKVYTAT 120
                                       44.45899999********************999********998 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.5e-05     0.083      11      45 ..      64      98 ..      63     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.5e-05
                                      T-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHT CS
                          HTH_IclR 11 alaeapqeltlselArrtglpkStvhRlLqtLvel 45
                                      ++++++++++  el++++++++ t +R L  L e 
  gi|300712999|ref|YP_003738811.1| 64 LIETTTEPMSANELSDACDVSPQTIYRRLEDLNEY 98
                                      57899************************999876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0002      0.26      22      42 ..      76      96 ..      72     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                            HTH_23 22 eIAreLgvsrrTvyrwlkryr 42
                                      e +++++vs++T+yr l+  +
  gi|300712999|ref|YP_003738811.1| 76 ELSDACDVSPQTIYRRLEDLN 96
                                      789***********9887655 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.25      14      44 ..      70     100 ..      62     103 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                                       SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
                             HTH_5  14 gelcvcelaeelglsqstvShHLkkLreaGL 44 
                                       +++++ el+++ ++s+ t+ + L  L e ++
  gi|300712999|ref|YP_003738811.1|  70 EPMSANELSDACDVSPQTIYRRLEDLNEYDM 100
                                       89************************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1127.78
//
Query:       gi|300713000|ref|YP_003738812.1|  [L=59]
Description: transposase IS4 family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 459.47
//
Query:       gi|300713001|ref|YP_003738813.1|  [L=284]
Description: Abortive infection protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-09   36.9   3.5    3.6e-09   36.9   3.5    3.3  3  CPBP      CPBP intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   3.0      0.18   3.2e+03      49      71 ..      25      47 ..       8     100 .. 0.65
   2 !   36.9   3.5     2e-13   3.6e-09      10      88 ..     120     210 ..      88     214 .. 0.83
   3 ?    0.1   0.1     0.059   1.1e+03      64      84 ..     252     272 ..     233     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.18
                                      HHCSGGGHHHHHHHHHHHHHHHH CS
                              CPBP 49 glaHlpngpsvllaalaGlvlgy 71
                                       ++ ++ g+++l ++l+G++ ++
  gi|300713001|ref|YP_003738813.1| 25 IFYIFMMGMIFLGMLLVGIYTAA 47
                                      33333344444444444444433 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 2e-13
                                       HHHHHHHHHHHHHHTTCHHHH.........HHHH.S-....HHHHHHHHHHHHHCSGGG...HHHHHHHHHHHHHHH CS
                              CPBP  10 lalllapllEEllfRglllql.........lqergss....tlailissilFglaHlpn...gpsvllaalaGlvlg 70 
                                        +++ +  lEE+++R ++l           l+    +     la++ s ++Fgl+H ++   g+  + aal G +++
  gi|300713001|ref|YP_003738813.1| 120 GMFFANMTLEEVVYRRIMLDNfikglaargLS----RkaaaSLAMVGSLVAFGLLHTVYrggGIVAIDAALTGTMFA 192
                                       36778888**********99866664444444....144558******************988779*********** PP

                                       HHHHHTT-HHHHHHHHHH CS
                              CPBP  71 ylylktgsllaaillHal 88 
                                       ++yl tg+l+ ++ +H++
  gi|300713001|ref|YP_003738813.1| 193 FAYLLTGKLALPMGIHFG 210
                                       ****************97 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.059
                                       HHHHHHHHHHHHTT-HHHHHH CS
                              CPBP  64 laGlvlgylylktgsllaail 84 
                                       ++ lv  ++y++ gs+ ++++
  gi|300713001|ref|YP_003738813.1| 252 VCLLVSIWVYRQRGSIQIPAI 272
                                       344566799999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2101.92
//
Query:       gi|300713002|ref|YP_003738814.1|  [L=35]
Description: hypothetical protein HacjB3_18403 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.28s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 261.57
//
Query:       gi|300713003|ref|YP_003738815.1|  [L=166]
Description: hypothetical protein HacjB3_18408 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-22   80.6   0.3    1.4e-22   80.4   0.3    1.0  1  DUF3592   Protein of unknown function (DUF3592)
     0.0094   16.0   0.3        1.8    8.7   0.0    2.3  2  DUF1206   Domain of Unknown Function (DUF1206)


Domain annotation for each model (and alignments):
>> DUF3592  Protein of unknown function (DUF3592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.3   1.6e-26   1.4e-22       7     145 ..      19     157 ..      13     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 1.6e-26
                           DUF3592   7 fglifllaglallvlgglllvgkyllsgqwervpgtvlssehrhrsdgsrsstysvtvrYrysfqgervs..glysg 81 
                                        g + l +gla++ +g++ + +++ + ++  +v +tv+ ++ +++   s+++++ ++v + ys++ger+s  +ly+ 
  gi|300713003|ref|YP_003738815.1|  19 GGMLALMLGLAVAGYGAYDYTQQSAAIENSVEVDATVTGTN-VDSIMTSGTTQFNPEVSFKYSYEGERYSssNLYPA 94 
                                       5778999**********************************.****************************9*99988 PP

                           DUF3592  82 sdn....vgdyaaql......yraGnavqvyynPsnPtqavldqtvsgtkagglwlmvglgavlGliflligll 145
                                       s +    +    +++      y++G++v++y+nP+ P++a+l+  +s    + lw  ++     G+ f++ g++
  gi|300713003|ref|YP_003738815.1|  95 SASknydT---KSGAqsamkeYEQGETVTAYVNPNSPDDAFLENEESS---SPLWFAAL-----GVAFIFGGIY 157
                                       88885542...4444445888**********************44444...48887666.....4444444443 PP

>> DUF1206  Domain of Unknown Function (DUF1206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.5    0.0028        25      45      62 ..      19      36 ..      12      40 .. 0.82
   2 !    8.7   0.0    0.0002       1.8      45      69 ..     140     164 ..     124     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0028
                           DUF1206 45 Grvllglvglgllgyglw 62
                                      G++l   +gl+++gyg++
  gi|300713003|ref|YP_003738815.1| 19 GGMLALMLGLAVAGYGAY 36
                                      67788889********99 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0002
                           DUF1206  45 GrvllglvglgllgyglwqlveAvt 69 
                                        + + +++g+++++ g++ l++A+t
  gi|300713003|ref|YP_003738815.1| 140 SPLWFAALGVAFIFGGIYGLFKAFT 164
                                       56778999999************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1255.15
//
Query:       gi|300713004|ref|YP_003738816.1|  [L=218]
Description: Bacterio-opsin activator HTH domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-18   64.1   0.0    1.2e-17   63.4   0.0    1.4  1  HTH_10        HTH DNA binding domain
     0.0014   18.1   0.1     0.0036   16.8   0.1    1.7  1  Sigma70_r4    Sigma-70, region 4
     0.0021   17.7   0.0     0.0046   16.6   0.0    1.6  1  Sigma70_r4_2  Sigma-70, region 4
     0.0026   17.3   0.0      0.008   15.7   0.0    1.8  2  HTH_24        Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
       0.07   13.0   0.0       0.14   12.1   0.0    1.5  1  HTH_5         Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   3.5e-21   1.2e-17       1      52 [.     162     213 ..     162     214 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.5e-21
                            HTH_10   1 LTdkqlevlklAyemGYFdyPRrvtlkeLAkelGIskstlsehLrkaeskli 52 
                                       +Td+q evl +A+++GY+ +PR+++l+++ + +GIs+ t+ ehLrkae++++
  gi|300713004|ref|YP_003738816.1| 162 ITDRQEEVLEVAVDLGYYCEPRQASLEDIGEVIGISPGTVGEHLRKAEKRVF 213
                                       6*************************************************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     1e-06    0.0036       6      46 ..     163     210 ..     160     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-06
                                       -HHHHHHHHHHH.......TTT--HHHHHHHHTS-HHHHHHHHHHHHH CS
                        Sigma70_r4   6 pererevlelrf.......geglTleEIgerlgiSrerVrqiekrAlr 46 
                                       ++r+ evle           +  +le+Ige+ giS ++V  ++++A +
  gi|300713004|ref|YP_003738816.1| 163 TDRQEEVLEVAVdlgyycePRQASLEDIGEVIGISPGTVGEHLRKAEK 210
                                       78999999998888888777889****************999999855 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.3e-06    0.0046      28      53 ..     186     211 ..     184     212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
                                       -HHHHHHHHT--HHHHHHHHHHHHHH CS
                      Sigma70_r4_2  28 sykEIAellgisegtVksrlsRArkk 53 
                                       s ++I e++gis+gtV  +l++A k+
  gi|300713004|ref|YP_003738816.1| 186 SLEDIGEVIGISPGTVGEHLRKAEKR 211
                                       779********************997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.92   3.3e+03      11      22 ..      22      33 ..      21      34 .. 0.78
   2 !   15.7   0.0   2.2e-06     0.008      17      43 ..     183     210 ..     179     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.92
                            HTH_24 11 lLqknprisqre 22
                                      +L ++p+i  + 
  gi|300713004|ref|YP_003738816.1| 22 ELTDDPSIKRKA 33
                                      799999998776 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.2e-06
                            HTH_24  17 r.isqreLAerlglSpstvnrrlkrLee 43 
                                       r  s  ++ e +g+Sp+tv ++l++ e+
  gi|300713004|ref|YP_003738816.1| 183 RqASLEDIGEVIGISPGTVGEHLRKAEK 210
                                       557889*******************998 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.9e-05      0.14      17      38 ..     186     207 ..     180     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.9e-05
                                       EHHHHHHHHTS-HHHHHHHHHH CS
                             HTH_5  17 cvcelaeelglsqstvShHLkk 38 
                                       +  ++ e +g+s++tv +HL+k
  gi|300713004|ref|YP_003738816.1| 186 SLEDIGEVIGISPGTVGEHLRK 207
                                       56788999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1623.44
//
Query:       gi|300713005|ref|YP_003738817.1|  [L=303]
Description: alpha/beta hydrolase fold protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-24   84.5   0.4    2.8e-22   79.6   0.4    2.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    8.4e-21   75.6   3.4    1.1e-20   75.2   3.4    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    6.7e-13   48.5   0.0      1e-12   47.8   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0035   16.9   0.0       0.82    9.2   0.0    2.7  2  DLH            Dienelactone hydrolase family
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.011   15.4   0.0    1.3  1  Esterase       Putative esterase
       0.15   12.2   0.0        0.2   11.7   0.0    1.2  1  Thioesterase   Thioesterase domain


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.4   9.3e-26   2.8e-22       1     257 []      49     292 ..      49     292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 9.3e-26
                                       SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEE CS
                     Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltl 77 
                                       p++v+lhG p+ ++ w+    ++ La++gf+v+++D+rG+  S+++     d y+   + +d+  +  +   ++ ++
  gi|300713005|ref|YP_003738817.1|  49 PLVVLLHGHPDFWYGWRD--QIRSLAEAGFRVVVPDQRGCNLSEAPDGI--DAYRQSELSADICELIHSESRESAHV 121
                                       78****************..****************************9..************************** PP

                                       EEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHH CS
                     Abhydrolase_1  78 vGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqr 154
                                       vGh++GG++a+++a+++p+ V++l   +     +++    ++ + s++  ++ ++ ++ + p  p +       ++r
  gi|300713005|ref|YP_003738817.1| 122 VGHDFGGFVAWNLALRHPSMVDRLGIFNV----PHPTVYRDTLRSSPQQIARSWYVWFYQVPKLPEWM------LTR 188
                                       ************************88888....68888888888899999999999999998888654......444 PP

                                       HHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC........THHHHSEEEEEEETTCS CS
                     Abhydrolase_1 155 hrlvdalkfpdkskrfpssgsdnasslatgalksieqwpttdsaklllrlre........lknvlaptlvisgtsDp 223
                                        +       ++++++++  +s + + +  + + ++  w  t   ++++++r+         + v++ptl+ +g +D 
  gi|300713005|ref|YP_003738817.1| 189 NDM------ANMVDSLE-ITSHPGTFDEETIACYKAAWRHTGITPRINWYRGfrrsdsqpRDTVTQPTLICWGGDDI 258
                                       443......44444443.455666666666666777777777777777777666677777899************** PP

                                       SSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
                     Abhydrolase_1 224 lvppkaledlaqllpkkrlvvisdagHlaflegp 257
                                       +  p++  ++ + + + +l  ++da H+++le++
  gi|300713005|ref|YP_003738817.1| 259 ALLPSMAQKSVDYCEDGKLQMFPDASHWVHLERD 292
                                       *******************************985 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   3.4   3.6e-24   1.1e-20       1     219 [.      51     296 ..      51     297 .. 0.67

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 3.6e-24
                                       EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTS.TS-GGCS--HHHC......HHHHHHHCCTT..TTSEEEE CS
                     Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGh.Grsdpppldledl......adlaalldelaagggpvvlv 70 
                                       v+llHG +   ++W  ++++ l+ ag++v++pD +G+    + +p++ +++      ad+ +l++++  ++  +++v
  gi|300713005|ref|YP_003738817.1|  51 VVLLHGHPDFWYGW-RDQIRSLAEAGFRVVVPDQRGCnL--SEAPDGIDAYrqselsADICELIHSE--SRESAHVV 122
                                       8*****33223556.5699999***************54..55555554432222335556666666..58888*** PP

                                       EETCHHHHHHHHHHCC.........EEEEES-..----TTTS----TTHHHHHH..TT-C....CCCHCCH...... CS
                     Abhydrolase_6  71 GHSlGGalalaaapla.......lvvgvlldppptalpagllaaalelllalla..llrl....lawlsre...... 128
                                       GH++GG++a+    la       ++ g++  p pt+++++l++ + ++++ ++           ++w+ ++      
  gi|300713005|ref|YP_003738817.1| 123 GHDFGGFVAWN---LAlrhpsmvDRLGIFNVPHPTVYRDTLRSSPQQIARSWYVwfY--QvpklPEWMLTRndmanm 194
                                       ***********...4444469876677*****9998888886666666665555431..333458999555455566 PP

                                       .......S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTT...CCHHTT-TTGCEEECTT-C..HHHHCHHCCCH. CS
                     Abhydrolase_6 129 .......plprlfladedadaawrarlarlaallaglgllp...aaawadlpvpllvlggeDp..lvprllerlla. 192
                                              + p +f +++ a +  ++r+++  +  ++   ++    ++  +++ p+l+ +g+D+  l+p ++++    
  gi|300713005|ref|YP_003738817.1| 195 vdsleitSHPGTFDEETIACYKAAWRHTGITPRINWYRGFRrsdSQPRDTVTQPTLICWGGDDiaLLPSMAQKSVDy 271
                                       66555554553444433344444444444445555444332223667777777777768999999999999999999 PP

                                       STTEEETCE...SSS-HHHHSHHHHHH CS
                     Abhydrolase_6 193 qagarlpvvlpgaGHlphleepdevae 219
                                        ++ +l + +p+a+H++hl e dev e
  gi|300713005|ref|YP_003738817.1| 272 CEDGKL-QMFPDASHWVHL-ERDEVSE 296
                                       899999.************.9999977 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   3.5e-16     1e-12       6     239 .]      50     292 ..      45     292 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 3.5e-16
                       Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrg.hvpsfddyvdDlaafvekvkeehpelplfll 81 
                                       +vvl+HG  +      + ++ La++Gf v+  D+rG   se   g +  + +++ +D+ +++    +e+ ++   ++
  gi|300713005|ref|YP_003738817.1|  50 LVVLLHGHPDFWYGWRDQIRSLAEAGFRVVVPDQRGCNLSEAPDGiDAYRQSELSADICELI---HSES-RESAHVV 122
                                       79***************************************666548889999999997776...4333.445789* PP

                       Hydrolase_4  82 GhSmGGliallyllrypdkvagl.ilsaPalkikakl......kappllklllkllg..kllpklqv.......... 139
                                       Gh  GG++a +++lr+p+ v++l i+  P   +  ++      +   +++ +  ++   + lp++ +          
  gi|300713005|ref|YP_003738817.1| 123 GHDFGGFVAWNLALRHPSMVDRLgIFNVPHPTVYRDTlrsspqQ---IARSWYVWFYqvPKLPEWMLtrndmanmvd 196
                                       ******************99965266666655555545543332...333322222200223444448888899998 PP

                       Hydrolase_4 140 snnlkadslsrdpevvaayeadplv.hgkitvrlllelldamkrleeraakitlPllllhGeaDkvvdpeasrelye 215
                                       s ++ ++  + d+e +a y+a     + ++++++++++ +  ++     + +t P+l+  G++D    p+ +++ ++
  gi|300713005|ref|YP_003738817.1| 197 SLEITSHPGTFDEETIACYKAAWRHtGITPRINWYRGFRRSDSQ---PRDTVTQPTLICWGGDDIALLPSMAQKSVD 270
                                       899999***********999998887778888998888876554...4455789*********************** PP

                       Hydrolase_4 216 rlgskdktlklypglyHellnEpd 239
                                        +   d +l+++p + H ++ E+d
  gi|300713005|ref|YP_003738817.1| 271 YCE--DGKLQMFPDASHWVHLERD 292
                                       **9..9**************9986 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00027      0.82      14     123 ..      49     143 ..      38     167 .. 0.68
   2 !    4.5   0.0    0.0076        23     122     187 ..     224     285 ..     211     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00027
                               DLH  14 pvvvviqe....ifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaav 86 
                                       p vv ++     ++G +d+i    ++lae+G+ +++Pd  +r+  + +++++  +a++       ++++ +d+    
  gi|300713005|ref|YP_003738817.1|  49 PLVVLLHGhpdfWYGWRDQI----RSLAEAGFRVVVPD--QRGC-NLSEAPDGIDAYR-------QSELSADI---C 108
                                       55555553333367888888....79************..6666.5677777777772.......23444555...2 PP

                               DLH  87 aylksvpevstkkvgvvGfCmGGalalllaaev.pevd 123
                                       + ++s +    +   vvG  +GG +a++la +   +vd
  gi|300713005|ref|YP_003738817.1| 109 ELIHSES---RESAHVVGHDFGGFVAWNLALRHpSMVD 143
                                       2233333...4456789999999999999988745555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0076
                               DLH 122 vdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagH 187
                                       +   + +Y  +  ++ +  + + +p l+  g+ D       ++ ++++  ++  d +l+++p+a H
  gi|300713005|ref|YP_003738817.1| 224 ITPRINWYRGFRRSDSQPRDTVTQPTLICWGGDDIAL----LPSMAQKSVDYCEDGKLQMFPDASH 285
                                       5556788877888899999999**********99654....566999999***************9 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   3.8e-06     0.011      91     147 ..      95     149 ..      43     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.8e-06
                                       CCCHC.HHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES CS
                          Esterase  91 aeaye.tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfS 147
                                        +ay+ + l++ +  l+ ++ r ++    v+G+ +GG++A +lal+hp +  + + f 
  gi|300713005|ref|YP_003738817.1|  95 IDAYRqSELSADICELIHSESRESAH---VVGHDFGGFVAWNLALRHPSMVDRLGIFN 149
                                       55666566777777888888887777...*********************99888775 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.7e-05       0.2      50     112 ..     102     159 ..      86     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.7e-05
                                       HHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCCCCCCHHCHH CS
                      Thioesterase  50 elaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflidssapseteaqe 112
                                       el a ++e + ++  e   +++Gh +Gg++A  +A +     + v +l+++ +++p +  +++
  gi|300713005|ref|YP_003738817.1| 102 ELSADICELIHSESRE-SAHVVGHDFGGFVAWNLALRH---PSMVDRLGIFNVPHPTV-YRDT 159
                                       6778889999999999.99****************874...45788888888888866.4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2295.12
//
Query:       gi|300713006|ref|YP_003738818.1|  [L=548]
Description: NADH dehydrogenase-like complex subunit CD [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-82  275.6   0.0    1.6e-80  270.1   0.0    2.2  1  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s
    9.1e-36  123.2   0.1    1.8e-35  122.2   0.1    1.5  1  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.1   0.0   1.8e-84   1.6e-80       5     271 .]     300     548 .]     296     548 .] 0.94

  Alignments for each domain:
  == domain 1  score: 270.1 bits;  conditional E-value: 1.8e-84
                                       HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---T...THHHHHHHHHHHHHHHHHHHHHHHHSSSSHHH CS
                    Complex1_49kDa   5 ltvflyafreRekildlleevtGaRltasyiriGGvarDlpe...gllekikeflkelekkldeleklltknrifkk 78 
                                       +++f+y+fr+Re + d+l+++tG+R++ +y+r+GGva+D+pe   +++e++++f++ l++klde+++llt+n++f+ 
  gi|300713006|ref|YP_003738818.1| 300 TATFMYCFRDRELVQDILTDLTGQRMMFNYFRVGGVAWDIPEpyeEFFEDVQTFINDLPRKLDEYHDLLTSNEVFQI 376
                                       4579*************************************98889******************************* PP

                                       HHSSSS-BSHHHHHHHTT-SSSSGGGT-TTTHHHHSS-SSGGGS-------SSBSHHHHHHHHHHHHHHHHHHHHHH CS
                    Complex1_49kDa  79 RtkgvgvlskeealelgltGpvlRasGvkyDlRkaepYeaYdeldfdvpvgeegDvydRylvrveEmrqSlkIieqa 155
                                       Rt+g g l  + a ++g+tGpv+R+sG++yDlR+++pY  Yd+l++dv++++ +D ++R+lvr++E+++S+ Ii+q+
  gi|300713006|ref|YP_003738818.1| 377 RTVGTGELPPKIAKAYGATGPVVRGSGIDYDLRQDDPYGYYDRLNWDVITEDGCDNFSRVLVRLREIEESAAIIDQC 453
                                       ***************************************************************************** PP

                                       HHT--.S-SB---TTTS---GGGGGT-HHHHHHHHHHHHS-----SEEEEEEEEETTEEEEEEEEEESSSS-SEEEE CS
                    Complex1_49kDa 156 leklpegpvlaedkkvalpkkeevkksmealihhfklvtegfkvpkgevyaavEapkGelgvylvsdgsskpyrlki 232
                                       ++ l + p          + +++++ +++++             p+ge+y+avE +kGelg+y+ +dg+++p r+ki
  gi|300713006|ref|YP_003738818.1| 454 VDLLADWP----------KGERTCQANVQRTL-----------KPSGECYRAVEGAKGELGIYIRADGTETPARFKI 509
                                       ****8433..........12333344444444...........7********************************* PP

                                       E-HHHHTTTTHHHHTTTS-SGGGTHHHHTT---HHHHH- CS
                    Complex1_49kDa 233 rapsfvnlqaleellkgellaDvvailgsldivlgevDR 271
                                       r psf nl+al+++++ge +aD+va+lgsld ++gevDR
  gi|300713006|ref|YP_003738818.1| 510 RGPSFSNLSALPAIANGEFVADLVATLGSLDAIMGEVDR 548
                                       **************************************9 PP

>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.1     2e-39   1.8e-35       2     120 ..      38     154 ..      37     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 2e-39
                                       E--HHHHHHHHHHHHH...TT--EEEEEEEEETTSSSEEEEEEEE--S-..-EEEEEE....-S-BEE--TTT-STH CS
                    Complex1_30kDa   2 vvepedllevakflkdeeelgfdvlsdltavDekeerfevvyhllslekn.erirvkvevdeeepevpSvtdlfpga 77 
                                       v++++++++v+++ +   e g+d++s++ta ++ e+rfe vyhl+s++++  +++v v + +++p+ +S+++++++a
  gi|300713006|ref|YP_003738818.1|  38 VIRADQVRRVLSTFRS--EAGLDHCSCVTAQEY-EDRFETVYHLTSYDNRtCELSVIVPTTKDNPVSESAVPVYRTA 111
                                       78999**********9..599***********9.7************6544667766666789************** PP

                                       HHHHHHHHHHSHHBCTTSSTSS-SSSSTTSSS-TTSTTS---- CS
                    Complex1_30kDa  78 dwyEREayDmfGivfeghpdlrrillpedfeghPLRkdfplsg 120
                                       +w+EREayD++Gi++e+hpdlrrillpe+++ghPLR  ++ ++
  gi|300713006|ref|YP_003738818.1| 112 EWHEREAYDLLGIEYEDHPDLRRILLPETWQGHPLRMAYDQNQ 154
                                       ************************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3957.09
//
Query:       gi|300713007|ref|YP_003738819.1|  [L=133]
Description: hypothetical protein HacjB3_18428 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1052.94
//
Query:       gi|300713008|ref|YP_003738820.1|  [L=454]
Description: hypothetical protein HacjB3_18433 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-18   65.2   0.0    1.2e-17   64.7   0.0    1.3  1  PDDEXK_4  PD-(D/E)XK nuclease superfamily


Domain annotation for each model (and alignments):
>> PDDEXK_4  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   6.5e-22   1.2e-17       3     138 ..      30     171 ..      28     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 6.5e-22
                          PDDEXK_4   3 ifdvlgkgskelrhSallAwlLnpeethgqgdsflkafldllrerlfssdeisasvadlesaeverenasekngriD 79 
                                       ++++lg +++e ++ ++lA++L p+e+hg++ + +++fl+ l +r++ + e+s+   dle+++v++e  + +ngr+D
  gi|300713008|ref|YP_003738820.1|  30 TLQLLGQSRQEGDWQRFLAYFLSPKEPHGLDYAAVEQFLQGLSDRDDINFEFSRF--DLEDINVATE-VPIPNGRLD 103
                                       7899999999*********************************************..**********.********* PP

                          PDDEXK_4  80 lll.qenkivvlIEnKvaAkdqkeQlarYee.......fakkka.....kkkdivvvyLtldgeapsedsle 138
                                       +l+  e++++vl E K+++ +  +Q  +Y         +    +     ++++  ++y+t+d++ p++    
  gi|300713008|ref|YP_003738820.1| 104 VLIwCEEEWFVLCELKIDSAEGDGQTPKYTTtetfqniD----LdpadvPEDRRHYLYVTPDRSLPTSPVFV 171
                                       9999*************************9976544333....15666999999999999998877765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3710.58
//
Query:       gi|300713009|ref|YP_003738821.1|  [L=475]
Description: gamma-glutamyltransferase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-121  406.6   0.0   1.8e-121  406.4   0.0    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.4   0.0    1e-125  1.8e-121      35     512 .]       1     470 [.       1     470 [. 0.96

  Alignments for each domain:
  == domain 1  score: 406.4 bits;  conditional E-value: 1e-125
                                       EEEEEEETTSCEEEEEEE--BB-TT--TTTT............TSCBCCHHHHSSGGG-BB--HHHHHHHHHHHH-S CS
                   G_glu_transpept  35 gfllvydaktkkvealdaretAPaaatkdmf............dkegdsklsktgalavgVPGevagleeahkkyGk 99 
                                       +f+l+++a++    a+ a++ APa at + +             + ++ ++++tga+av+VPG+ +g+e++ +++G+
  gi|300713009|ref|YP_003738821.1|   1 MFALYRTADGDVG-AMRACGGAPAGATIEAVreavadddssevADPASVEMPETGAHAVTVPGTARGWEATADRFGT 76 
                                       5888888877755.9***********************999888889999*************************** PP

                                       S-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHHHHTSHHHHHHHEETTSE--TTSEE--HHHHHHHHHHHHHTTHH CS
                   G_glu_transpept 100 lpwadllepaiklareGfpvsealaralaeaeerlkkdpelaklFlpegevlkagellkqpalAktLerlaeeGaea 176
                                        ++ +ll+pai++a +G+pvse ++++++  e+ +k+d ++++ Fl +g+++++g+ ++ p+l ++Le++aeeGa+ 
  gi|300713009|ref|YP_003738821.1|  77 FDLGRLLQPAIRYATDGYPVSEVVSAQWQHGEDLFKTD-HAREAFLFDGSAPETGQHVTLPKLGASLELIAEEGADV 152
                                       *********************************99988.677*********************************** PP

                                       HHSSHHHHHHHHHHHHTT-S--HHHHHH---EEES-EEEEETTCEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTT CS
                   G_glu_transpept 177 FYkGelAeklvaelqkagGiltaeDLanykvevreplsadyrggytvyepppssggivllqiLnilegfdlkslssn 253
                                        Y+Ge+Ae+++ e+qk+gG lt +DLa+++ve+ ep+s++y ++ +v+e pp+ +g+++l++Lni e++   ++++n
  gi|300713009|ref|YP_003738821.1| 153 VYDGEIAEAIATEVQKEGGFLTVDDLAAFEVEWPEPVSTTY-NDAEVFELPPNNQGLIALEALNIAEELGAGEYDRN 228
                                       *****************************************.9********************************** PP

                                       CHHHHHHHHHHHHHHHHHHHHH-SSTTTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SGGGCSCGGCSCG.TTEEE CS
                   G_glu_transpept 254 saetlhllvEamklayadRsrylgDpdfvknptelveellskeyakeraklIkdkaatpsseyykaaeaaeesggTt 330
                                       s+e++h lvEamkla++d ++y++Dp++++ p      l sk++a++ra+++ ++++++  +++   +a++e+ +T+
  gi|300713009|ref|YP_003738821.1| 229 SPERIHALVEAMKLAFHDGHHYITDPEYADHP-----PLGSKDWARRRAQSVGETTNND-VSVG-VPNANAEDADTV 298
                                       *****************************966.....9*****************9998.4444.45556689**** PP

                                       EEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSBSTS..TTSCSTTSTTB--TT----B----EEEEE CS
                   G_glu_transpept 331 hlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemddfstgvenafgldpspanaiePgkRplssmaPtivlk 407
                                        l+v+D+egn+VS++++   +FGsgvv  +tGi+L+n++++fs        ld++++n +ePgkRp+++++P++v  
  gi|300713009|ref|YP_003738821.1| 299 LLTVADDEGNVVSYINSRFAGFGSGVVAGETGIALQNRGSSFS--------LDKNHPNSLEPGKRPFHTLIPGLVQF 367
                                       *******************************************........************************** PP

                                       TTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S-HHHHHHS--EEESSSSTEEEESTTS.HHHHHHHHHTTSEEEESS CS
                   G_glu_transpept 408 dgkpvlvlGaaGGsriisavlqvlvnvldlgldlqeavdaprihhqllpdkvevEegfseevveeLearGhkvkeve 484
                                        ++ ++ +G++GG +++++++q++ n++d+g++lq a+d+pr+  +    ++ vE+ f+ +vv++L +  h++   +
  gi|300713009|ref|YP_003738821.1| 368 GEDDWAGFGVMGGYMQPQGHVQLISNIVDYGMPLQRALDEPRWRYR-EDGQLAVEPHFDTSVVAKLVRKEHDICILS 443
                                       *********************************************6.3459*************************9 PP

                                       STCCCEEEEEEEETTTEEEEEE-TTTTT CS
                   G_glu_transpept 485 dsssvvaavavakekgvleaasDprkdg 512
                                        ++ ++a++a+  e+gvl++a++prkdg
  gi|300713009|ref|YP_003738821.1| 444 SGMFGGAQIARN-EQGVLSGATEPRKDG 470
                                       999998888886.*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3511.69
//
Query:       gi|300713010|ref|YP_003738822.1|  [L=57]
Description: hypothetical protein HacjB3_18443 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 450.56
//
Query:       gi|300713011|ref|YP_003738823.1|  [L=275]
Description: amidase, hydantoinase/carbamoylase family protein, partial [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-17   64.1   0.1    1.7e-17   63.8   0.1    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    2.9e-10   40.0   0.0    9.5e-10   38.4   0.0    1.8  2  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
        0.1   12.2   0.1       0.55    9.9   0.0    2.1  2  DUF2576        Protein of unknown function (DUF2576)


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.1   2.8e-21   1.7e-17      88     205 ..      44     268 ..       2     270 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 2.8e-21
                                       TTCESEEEEEEEESSSBTCHSTETEEEE................................................. CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
                     Peptidase_M20  88 rekvdavfelhieepgileagklaigvv................................................. 115
                                        e+++a++e+hie++++le+++  +g+v                                                 
  gi|300713011|ref|YP_003738823.1|  44 MEDIHAYLEVHIEQGPVLEQNETNVGIVdgvfgmswleatiygeadhagpspihsrndalvaaadavtairrlsnrf 120
                                       579****************999999999************************************************* PP

                                       ...........................................................EEEEEEEEEESHEEECCH CS
                                       ...........................................................xxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20 116 ...........................................................kvevelleggapvtlnds 133
                                                                                                  ++e+e+l++ + ++++ +
  gi|300713011|ref|YP_003738823.1| 121 sddvvttvgefsvspdsinvvpdevtfsidlrsydddtvargvehiekeletvceregtEFELEELWRIPHTEFS-P 196
                                       **********************************************************77****99****99999.* PP

                                       HHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHHTTT.EEEEEEESS.GGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20 134 plvkalaeaaeelfgekvelivsgpggtdarffagi.ptvmifgpg.sglaHspnEyvdledlekgikvlarll 205
                                        + +++ eaa+e    ++++i+ g +g+da++++ i  ++++f+p+ +g  H++ E+++ ed+ +g++v+ar+ 
  gi|300713011|ref|YP_003738823.1| 197 TVCDIVTEAATES-DCSYQRIIGG-AGHDANYLNDItDAALLFVPSvDGKTHNEAEFTEWEDILAGVDVFARAT 268
                                       ************6.5569999***.***********668899**9977***********************986 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.42   2.5e+03      86     107 ..      36      57 ..      32      59 .. 0.80
   2 !   38.4   0.0   1.6e-13   9.5e-10       2     106 ..      73     175 ..      72     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.42
                                       HHHHHHHHHHHHHHHHTSCCST CS
                         M20_dimer  86 pgedpeevleeieeilekeape 107
                                       +ge+p++ +e+i ++le + ++
  gi|300713011|ref|YP_003738823.1|  36 DGESPAKPMEDIHAYLEVHIEQ 57 
                                       6888999999999999887665 PP

  == domain 2  score: 38.4 bits;  conditional E-value: 1.6e-13
                                       EB-EEEEEEEEEE-B-EEGG.-TTTTB-.HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C.CCCEESSE CS
                         M20_dimer   2 ghkGlaggkitvkgkagHsg.apgagaN.AieklarllaeledeegdiaeerslprttlnvtgiegGs.aknvipde 75 
                                       g +G+ + + t+ g+a H+g  p + +N A+ ++a+++++++ +      +r++     +v++++    ++nv+pde
  gi|300713011|ref|YP_003738823.1|  73 GVFGMSWLEATIYGEADHAGpSPIHSRNdALVAAADAVTAIRRLS-----NRFSDDVVTTVGEFSVSPdSINVVPDE 144
                                       568*****************999888889999************5.....569999999999999999********* PP

                                       EEEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
                         M20_dimer  76 aeakidiRllpgedpeevleeieeilekeap 106
                                       ++++id+R ++ +++++  e ie+ le++++
  gi|300713011|ref|YP_003738823.1| 145 VTFSIDLRSYDDDTVARGVEHIEKELETVCE 175
                                       ************************9999876 PP

>> DUF2576  Protein of unknown function (DUF2576)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   9.3e-05      0.55      10      41 ..     153     184 ..     149     189 .. 0.90
   2 ?   -1.2   0.1      0.27   1.6e+03      27      40 ..     198     211 ..     196     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9.3e-05
                           DUF2576  10 DyDrDqikreLnsLrrnvhDLCtrsGtsfDCn 41 
                                        yD D + r +  + +    +C r Gt f+  
  gi|300713011|ref|YP_003738823.1| 153 SYDDDTVARGVEHIEKELETVCEREGTEFELE 184
                                       6****************************866 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.27
                           DUF2576  27 vhDLCtrsGtsfDC 40 
                                       v D+ t + t  DC
  gi|300713011|ref|YP_003738823.1| 198 VCDIVTEAATESDC 211
                                       78999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2000.77
//
Query:       gi|300713012|ref|YP_003738824.1|  [L=223]
Description: extracellular solute-binding protein family 1 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-17   62.8   0.0      6e-17   62.4   0.0    1.2  1  SBP_bac_8   Bacterial extracellular solute-binding protein
      1e-14   54.6   0.0    1.3e-14   54.3   0.0    1.0  1  SBP_bac_6   Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.014   15.3   0.1      0.038   14.0   0.1    1.7  1  SBP_bac_1   Bacterial extracellular solute-binding protein
      0.081   12.7   0.0       0.12   12.0   0.0    1.3  1  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.3e-20     6e-17      96     263 ..       4     167 ..       2     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.3e-20
                                       EEEEEHHHHHHS.---BHHHHHHHHHHHHHH-SE.GG---GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHT CS
                         SBP_bac_8  96 vliynkdllekaedpktwdellaaakklkgkfgl.pdpasgwlqaallakdgksldddggkdglkealellkklkdn 171
                                       +l+yn ++++    p++wd l++  +++  +++l    as  +  ++l+  g++++d   +d+++e+ e l + kd 
  gi|300713012|ref|YP_003738824.1|   4 ALVYNNEYFDS--EPDSWDILWD--EEFADQMALmVHYASAAGKLGALY-TGQDPND---PDDFDEIEEVLINQKDL 72 
                                       699*******5..8*********..***977755233445566778888.9999997...79*************** PP

                                       T-EE-S...--SSTTTTTSBSEEE..E-TTHHHHHH-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHH CS
                         SBP_bac_8 172 gktydtg.adavsefanGevafti..ngswdiaaaqkagkklgaivpkqgsfaggkglavpknaknedlaAldFlkw 245
                                       ++ty +  ++ ++ f n ev  ++  +g+ +ia++  + + +  +vp  gs+ g++++++p++a++++ a+l Fl++
  gi|300713012|ref|YP_003738824.1|  73 VVTYASEhESHMQSFINEEVILGThtSGRINIANFSHDADHVSWTVPEAGSLFGTDSIVIPADAPHPR-ATLNFLNY 148
                                       ****65548899**********99445666677777878899999***********************.6******* PP

                                       HTTSHHHHHHHHHH--.-B CS
                         SBP_bac_8 246 ltspenqaalaektgy.ip 263
                                       + s+++ +++++ ++y +p
  gi|300713012|ref|YP_003738824.1| 149 VISEDSFREFVNIMNYkVP 167
                                       ***************9555 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.8e-18   1.3e-14      61     226 ..       5     178 ..       3     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.8e-18
                         SBP_bac_6  61 lavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsdlfealllalyk...dfg.edgvkkllrnlkanlhpaq.. 131
                                       l++n + ++ +  P sW+ L+d+e++++ al  +  s++ ++ +l++ +   d + +d++++ l n k+++  ++  
  gi|300713012|ref|YP_003738824.1|   5 LVYNNEYFDSE--PDSWDILWDEEFADQMALMVHYASAAGKLGALYTGQdpnDPDdFDEIEEVLINQKDLVVTYAse 79 
                                       89*********..********************9988999999999999***6666*******************99 PP

                         SBP_bac_6 132 mvkaagslesgepavsvvpyffadilpekkkgk..nlkvvwPedGalvspifmlvkkg.kkkelakafidfllspev 205
                                        +  ++s + +e  v ++++ +++i  ++ + +  ++  ++Pe G+l+ +++++++++ +++  +  f+++  s++ 
  gi|300713012|ref|YP_003738824.1|  80 HESHMQSFINEE--VILGTHTSGRINIANFSHDadHVSWTVPEAGSLFGTDSIVIPADaPHPRATLNFLNYVISEDS 154
                                       9999********..***************988899*****************************************8 PP

                         SBP_bac_6 206 qailakagg.vfPvv..tnpavln 226
                                        + +++ ++ ++P    +    ++
  gi|300713012|ref|YP_003738824.1| 155 FREFVNIMNyKVPHEdiESLLSDD 178
                                       887777776588876553333344 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   8.4e-06     0.038     116     312 ..       4     153 ..       2     154 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.4e-06
                                       EEEEETTTHH.CTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSH CS
                         SBP_bac_1 116 gliYNkdlfe.kagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnp 191
                                       +l+YN  +f+ +++     +Wd  + +++++ ++       ++++sa+g+++++++    +                
  gi|300713012|ref|YP_003738824.1|   4 ALVYNNEYFDsEPD-----SWD--ILWDEEFADQMALM---VHYASAAGKLGALYTGQDPND--------------- 55 
                                       78899999996444.....888..66666666666655...899999999999883333333............... PP

                                       HHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTE CS
                         SBP_bac_1 192 egvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeel 268
                                            +++ +  +   n   ++  ++++ +  ++  + f + e+ ++ ++++ +++a+ +    +++  +  ++e  
  gi|300713012|ref|YP_003738824.1|  56 ----PDDFDEIEEVLIN---QKDLVVTYASEHESHMQSFINEEVILGTHTSGRINIANFSH---DADHVSWTVPEA- 121
                                       ....4555555555555...33334444444444456788999999999988855554222...222233333322. PP

                                       EEECEEBETTTTSEE.EEEEEEEEBTTCSTHHHHHHHHHHHTSHH CS
                         SBP_bac_1 269 gvaplPagkggkpgi.lgayglaipkgsknpeaAkkFldfllspe 312
                                                    g+ +g++ ++ip+++++p a   Fl+++ s++
  gi|300713012|ref|YP_003738824.1| 122 -------------GSlFGTDSIVIPADAPHPRATLNFLNYVISED 153
                                       .............2346************************9986 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.8e-05      0.12     123     219 ..      37     153 ..      13     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.8e-05
                                       HHGGG--HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHH.........................H..HS CS
                        SBP_bac_11 123 lleaagaqellkalekkvvklgessrqlltaveageadagivyesea.........................kaaen 174
                                       ++ aag    l al+ +   + +++ + +++v  ++ d++++y se                          ++   
  gi|300713012|ref|YP_003738824.1|  37 YASAAG---KLGALYTGQDPNDPDDFDEIEEVLINQKDLVVTYASEHeshmqsfineevilgthtsgriniaNFSHD 110
                                       445666...66777777777778888888888889999999999999999999999999999999998875544466 PP

                                       TTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHH CS
                        SBP_bac_11 175 gdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspe 219
                                       +d+++   + +g ++  +d +++++++a++++a   Fl+++ s++
  gi|300713012|ref|YP_003738824.1| 111 ADHVSWTVPEAGSLF-GTD-SIVIPADAPHPRATLNFLNYVISED 153
                                       777777777777776.455.699******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1688.41
//
Query:       gi|300713013|ref|YP_003738825.1|  [L=102]
Description: hypothetical protein HacjB3_18458 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 796.70
//
Query:       gi|300713014|ref|YP_003738826.1|  [L=289]
Description: ABC transporter related protein, partial [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-16   59.8   0.0    7.9e-16   58.8   0.0    1.5  1  ABC_tran         ABC transporter
    1.9e-13   50.3   0.0      6e-13   48.8   0.0    1.9  1  TOBE_2           TOBE domain
     0.0036   17.2   0.0     0.0049   16.7   0.0    1.2  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
  ------ inclusion threshold ------
      0.049   13.9   0.2        1.2    9.5   0.2    2.4  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
       0.11   13.1   0.0       0.27   11.7   0.0    1.7  1  Glyco_tranf_2_4  Glycosyl transferase family 2
       0.15   11.2   0.4        2.8    7.0   0.0    2.3  2  TGT              Queuine tRNA-ribosyltransferase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   2.7e-19   7.9e-16      63     136 ..       1      83 [.       1      84 [. 0.94

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 2.7e-19
                                       EE-SS--S-TTSBHHHH.............HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT CS
                                       xxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                          ABC_tran  63 vlpqepqlfpeltvren.............esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkk 126
                                       +++q+  lfp+ltv+en             e+++ i+++l+ ++l++ +d+ +    s+LSgG++qrvalar+++++
  gi|300713014|ref|YP_003738826.1|   1 MVFQDLALFPHLTVGENieyglkqqgikkdERKQSIKEMLTMVQLEGYADRDI----SELSGGEQQRVALARSIVNE 73 
                                       69************************987777777***************999....******************** PP

                                       SSEEEEESTT CS
                                       xxxxxxxxxx RF
                          ABC_tran 127 pkllllDEpt 136
                                       p+++l+DEp 
  gi|300713014|ref|YP_003738826.1|  74 PEVVLFDEPL 83 
                                       *********7 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0     2e-16     6e-13       1      76 []     206     278 ..     206     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 2e-16
                            TOBE_2   1 laiRPEklrlaaaggan.glsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                                       +aiRP ++rl+ a++ +  +sG+V+++ y+G++t y v+++  +++v+    ++   +l++G+tV l+wd  d++v+
  gi|300713014|ref|YP_003738826.1| 206 VAIRPHNVRLS-ADPSEgLISGRVQNRMYRGNETAYIVATDWDEFLVIDDTLGT---TLDIGTTVSLGWDMNDVFVF 278
                                       79********4.44444277*************************999999999...******************98 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06    0.0049     220     301 ..      39     118 ..      11     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
                            AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQvilt 295
                                        ++ +  +++ +++++elS G ++  al+ ++   +    ++l+DEp ++L+ kl  +   el ++ +++g+ ++ +
  gi|300713014|ref|YP_003738826.1|  39 MLTMVQLEGYADRDISELSGGEQQRVALARSIVNEP---EVVLFDEPLASLDRKLRQHMQfELQRIQEETGITFLYV 112
                                       6666777889999***********99*******999...9************9888777665556666667****** PP

                            AAA_21 296 THSpll 301
                                       TH+ ++
  gi|300713014|ref|YP_003738826.1| 113 THDQEI 118
                                       **9876 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00038       1.2      26      83 ..      49      93 ..      30     100 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00038
                           SbcCD_C 26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiat 83
                                       +r++++lSGGe+q    +ala   ++ +       + +++v++DE  ++lD + ++ 
  gi|300713014|ref|YP_003738826.1| 49 ADRDISELSGGEQQR---VALA---RSIV-------NEPEVVLFDEPLASLDRKLRQH 93
                                      579999999999954...4444...2222.......3477888888888888877665 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.2e-05      0.27      66      92 ..     232     256 ..     193     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.2e-05
                   Glyco_tranf_2_4  66 laryaeadwvlvvDaDEflvvpdsrsl 92 
                                       + r +e+ ++++ D DEflv++d  +l
  gi|300713014|ref|YP_003738826.1| 232 MYRGNETAYIVATDWDEFLVIDD--TL 256
                                       3355789***************9..44 PP

>> TGT  Queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0   0.00095       2.8     170     205 ..      24      63 ..      11      78 .. 0.82
   2 ?    1.7   0.1     0.039   1.2e+02     229     250 ..     256     277 ..     248     283 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00095
                                       --TT-HHHHHHHHHHHHHH.--SEEE...E-SSSSSSHHH CS
                               TGT 170 qGglyedlreesaeelakr.dfdgya...igGlsvgeeke 205
                                       q g+++d+r++s++e+  + +++gya   i+ ls+ge+++
  gi|300713014|ref|YP_003738826.1|  24 QQGIKKDERKQSIKEMLTMvQLEGYAdrdISELSGGEQQR 63 
                                       778**************754789**999999999999543 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.039
                                       B-SHHHHHHHHHTT--EEEESH CS
                               TGT 229 vgtPedlleavalGvDmfdcvy 250
                                        gt  d+   v+lG+Dm d+ +
  gi|300713014|ref|YP_003738826.1| 256 LGTTLDIGTTVSLGWDMNDVFV 277
                                       68999************99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2114.25
//
Query:       gi|300713015|ref|YP_003738827.1|  [L=289]
Description: binding-protein-dependent transport systems inner membrane component [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-15   55.7  20.7    5.1e-15   55.7  20.7    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        6.9    5.8   7.8        3.3    6.8   4.8    2.1  2  RELT          Tumour necrosis factor receptor superfamily mem


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8  11.0      0.48   4.3e+03      26      69 ..      18      91 ..      11      93 .. 0.75
   2 !   55.7  20.7   5.7e-19   5.1e-15       3     174 ..      86     273 ..      84     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.48
                      BPD_transp_1 26 vllslPsfvlaillvlvf..............................vilsilghlilpviillllsaapyvr 69
                                      +l +lP+fvla ++v+ +                              +++  + + +l + ++ll+s ++y++
  gi|300713015|ref|YP_003738827.1| 18 ILIGLPMFVLAAFFVVPLffmvglsfldglppgagitldnylgvvdsvYLSVLWRTFVLTAQTTLLVSVLGYTL 91
                                      6789*****98888877777778999999999999999999988888444444445555588888888887775 PP

  == domain 2  score: 55.7 bits;  conditional E-value: 5.7e-19
                      BPD_transp_1   3 llGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf................vilsilghlilpviilll 61 
                                       +lG+ +a  + r +k + +++ l+ +++++ ++v +  l+ vf                  + ++ +++ +v++ l 
  gi|300713015|ref|YP_003738827.1|  86 VLGYTLAysMVRFSKHTTFFLLLVVLPFWTNYIVRMYALITVFqnggalswlmnavglaNGDFGILYTNHAVFLGLS 162
                                       79999999999***********************99999999999***********988666677799999****** PP

                      BPD_transp_1  62 lsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlg 138
                                       + ++p+++l ++a l +l++dl+ aa+ lGa++++ f++v+lP++ + i++g++l+++ ++g +v +e+lg   G +
  gi|300713015|ref|YP_003738827.1| 163 YVWLPLATLPFYASLTNLDTDLIDAAKDLGAGPIKAFVTVTLPMTYTGIMAGVVLVAIPAFGSFVTPELLG---GTN 236
                                       ***********************************************************************...999 PP

                      BPD_transp_1 139 tllleailgydyseis......nggvlalviavlllnlvadi 174
                                       ++++  i+ ++++++       +     l+i+v ++++++ +
  gi|300713015|ref|YP_003738827.1| 237 QVMIGNIIDQQFNQAFnwpfgsA-----LGIIVSAFMVLILA 273
                                       9999999999**99999765443.....33333333333322 PP

>> RELT  Tumour necrosis factor receptor superfamily member 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.8   0.00037       3.3       2      15 ..      28      41 ..      27      43 .. 0.93
   2 ?   -4.0   0.0      0.89     8e+03       4      10 ..     122     128 ..     121     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00037
                              RELT  2 ivfvLVpvFflmGL 15
                                      ++f++Vp+Ff++GL
  gi|300713015|ref|YP_003738827.1| 28 AAFFVVPLFFMVGL 41
                                      69***********9 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.89
                              RELT   4 fvLVpvF 10 
                                       ++L+ vF
  gi|300713015|ref|YP_003738827.1| 122 YALITVF 128
                                       8999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2041.66
//
Query:       gi|300713016|ref|YP_003738828.1|  [L=275]
Description: binding-protein-dependent transport systems inner membrane component [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-19   69.3  26.6      6e-19   68.5  17.1    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.048   13.6   0.0      0.072   13.0   0.0    1.2  1  DUF3600       Domain of unknown function (DUF3600)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   3.5    0.0013        12      12      62 ..      15      89 ..       8     102 .. 0.75
   2 !   68.5  17.1   6.6e-23     6e-19      10     171 ..     100     264 ..      86     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0013
                      BPD_transp_1 12 rnkkldkllrpliivllslPsfvlaillvlvf.......................vilsilghlilp.viillll 62
                                      ++++l ++ ++l+ ++l+ P+ ++a++ ++                         +i+si+++l  + +++ +++
  gi|300713016|ref|YP_003738828.1| 15 YGSILGRVTMVLVLIGLWAPIALVAFMSFAEGgvltfppdgltthwyrdflgngsAIQSIITTLQVSlIVTPITV 89
                                      789999*********************886668888899999999888777777655555555555533333333 PP

  == domain 2  score: 68.5 bits;  conditional E-value: 6.6e-23
                      BPD_transp_1  10 lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlvea 86 
                                        ++ ++++ l ++ i ++l +P +v +i l+l+f +l  lg++ ++v++  ++ ++p++ li+   + + ++ l+ea
  gi|300713016|ref|YP_003738828.1| 100 SRYEFRGKGLTQIAISLPLIVPLVVTGIALTLFFGFL-NLGSGYFAVVVSHVVRTLPFAALIILPTFLTFDTRLEEA 175
                                       578889999999*************999999776666.9************************************** PP

                      BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.......ng 156
                                       +  lGa+++++f+kv+lPn++p +++g +laf+++++++v ++f++   G gt ++  +l++++++ +        +
  gi|300713016|ref|YP_003738828.1| 176 SQDLGATEIETFFKVTLPNTFPGLVAGGLLAFTISFNEFVYTYFVA---GTGTETMPLYLWNQIQFSAtpevnvlSV 249
                                       **********************************************...8888888888888888888888755422 PP

                      BPD_transp_1 157 gvlalviavlllnlv 171
                                       ++l ++ia++l+ ++
  gi|300713016|ref|YP_003738828.1| 250 IFLLVAIATVLIAVL 264
                                       222222222222222 PP

>> DUF3600  Domain of unknown function (DUF3600)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     8e-06     0.072      18      50 ..     157     189 ..     151     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8e-06
                           DUF3600  18 iaavtlesyllfdaklsqakgdlGeeeyeefke 50 
                                       +a + l ++l fd++l++a +dlG+ e e f +
  gi|300713016|ref|YP_003738828.1| 157 AALIILPTFLTFDTRLEEASQDLGATEIETFFK 189
                                       5668899**********************9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1937.97
//
Query:       gi|300713017|ref|YP_003738829.1|  [L=433]
Description: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-35  122.7   0.7    2.6e-35  122.0   0.7    1.3  1  Peptidase_M20  Peptidase family M20/M25/M40
    2.4e-17   62.8   0.0    7.7e-17   61.2   0.0    1.9  2  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.015   14.4   0.0       0.35    9.8   0.0    2.5  3  Peptidase_M42  M42 glutamyl aminopeptidase
      0.049   13.6   0.1       0.16   11.9   0.0    1.9  2  Pyridox_ox_2   Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.7   5.8e-39   2.6e-35       2     204 ..     102     423 ..     101     426 .. 0.90

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 5.8e-39
                                       EEEES-BSSTTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTH CS
                                       xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20   2 lgsHlDvVpeeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgG 77 
                                       l +H DvV  ++ d+wt+ p+ +t+edG++yGrG++dmkggv+a + a+++l+d gi+++g+ ++  ++dEE+  gG
  gi|300713017|ref|YP_003738829.1| 102 LSGHVDVVSVDDLDKWTYdPWDTTIEDGRIYGRGTTDMKGGVAANIFAAKTLHDLGIELNGDFTIQTTVDEEA--GG 176
                                       78*******888899*********************************************************8..78 PP

                                       HHHHHHHHHTTTCESEEEEEEEESSSBTCHSTETEEEE....................................... CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
                     Peptidase_M20  78 akallegleerekvdavfelhieepgileagklaigvv....................................... 115
                                       ++ +l  le+++++da   ++i ep +    +  igv                                        
  gi|300713017|ref|YP_003738829.1| 177 TGGVLSALERGYQPDA---AIITEPYLIP--N--IGVAsagvmyfrvtvtgkaahaargfqgtnsavkaaaliqald 246
                                       88888877799*****...5588665544..2..33335566799999***************************** PP

                                       ............................................................................. CS
                                       ............................................................................. RF
                     Peptidase_M20 116 ............................................................................. 115
                                                                                                                    
  gi|300713017|ref|YP_003738829.1| 247 eldqqrkadisfepavkqypnaegsvtnlnigvvdagdwpstvpsktvlecrigwppgetreevreqvesviadvte 323
                                       ***************************************************************************** PP

                                       ........EEEEEEE.EEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEE.EESSSBHTHHHH...TTTEEEEEEESS CS
                                       ........xxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...xxxxxxxxxxxx RF
                     Peptidase_M20 116 ........kvevell.eggapvtln.dsplvkalaeaaeelfgekveli.vsgpggtdarff...agiptvmifgpg 178
                                                 e+e++ ++++p +++ d+++v++++e ae+++g  ++ + v g +g d rf+     ip+   +gp 
  gi|300713017|ref|YP_003738829.1| 324 ddswlsehPPELEWYgWSAEPHEVDsDEEIVQLAKEHAEAITG--QTGSfVGGLAGLDERFYnhyYDIPCP-SVGPR 397
                                       *******659*****999**********************989..444424448********544444776.58988 PP

                                       GGCTTSTTTEEEHHHHHHHHHHHHHH CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20 179 sglaHspnEyvdledlekgikvlarl 204
                                       ++++H+ +Ey ++++l++ ++++a +
  gi|300713017|ref|YP_003738829.1| 398 GDNIHGADEYAEIDSLVQTAQTVALA 423
                                       8******************9998866 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.94   4.2e+03      53      72 ..     121     148 ..     111     152 .. 0.52
   2 !   61.2   0.0   1.7e-20   7.7e-17       2     107 ..     207     324 ..     206     326 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.94
                                       CCTCCCCCEECCE-C........CCCEE CS
                         M20_dimer  53 lprttlnvtgiegGs........aknvi 72 
                                       ++ tt++ + i+g          a+n+ 
  gi|300713017|ref|YP_003738829.1| 121 PWDTTIEDGRIYGRGttdmkggvAANIF 148
                                       5556666666655332332222266665 PP

  == domain 2  score: 61.2 bits;  conditional E-value: 1.7e-20
                                       EB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.................TCCTCCCCCEECCE- CS
                         M20_dimer   2 ghkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdia............eerslprttlnvtgiegG 66 
                                       +  G++ +++tv+gka+H++ +  g N+  k+a l+++l +++++ +            ++   + t+ln++++++G
  gi|300713017|ref|YP_003738829.1| 207 ASAGVMYFRVTVTGKAAHAARGFQGTNSAVKAAALIQALDELDQQRKadisfepavkqyPNAEGSVTNLNIGVVDAG 283
                                       5679**************************************99999***********99999999*********** PP

                                       CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCST CS
                         M20_dimer  67 saknvipdeaeakidiRllpgedpeevleeieeilekeape 107
                                       +++ ++p+++ ++  i  +pge++eev+e++e++++++ ++
  gi|300713017|ref|YP_003738829.1| 284 DWPSTVPSKTVLECRIGWPPGETREEVREQVESVIADVTED 324
                                       ***********************************998765 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.28   1.3e+03       2      25 ..      86     109 ..      86     112 .. 0.87
   2 ?    9.8   0.0   7.9e-05      0.35     115     186 ..     118     194 ..     106     199 .. 0.80
   3 ?    1.4   0.0      0.03   1.3e+02     255     290 ..     382     417 ..     349     419 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.28
                                       -EEEEEESSTTSSEEEEEEE--B- CS
                     Peptidase_M42   2 nliakkkgkekepkvmiaAHmDei 25 
                                       n+ +++ g+ ++ ++++++H+D +
  gi|300713017|ref|YP_003738829.1|  86 NVAGTIDGEGDGRSLTLSGHVDVV 109
                                       67888999999***********87 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 7.9e-05
                                       EES---EEETTECEEET.THHHHHHHHHHHHHHHHHCTSS-S..SEEEEEEESTCTTTSHHHHHHH..HHH--SEEE CS
                     Peptidase_M42 115 vfdkefvelangkivsk.alDdragvavllellkelkeeele..atvylvatvqEEvGlrGaktsa..ekikpdiai 186
                                       ++d+  +++++g+i ++ + D + gva+ + ++k l++  +e   ++++  tv EE G  G   sa  + ++pd+ai
  gi|300713017|ref|YP_003738829.1| 118 TYDPWDTTIEDGRIYGRgTTDMKGGVAANIFAAKTLHDLGIElnGDFTIQTTVDEEAGGTGGVLSAleRGYQPDAAI 194
                                       5556667788999999845799****************98887799************9998766521557788777 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.03
                                       HHTSTTTSEEEEEEEEEBSTTSTTEEEEHHHHHHHH CS
                     Peptidase_M42 255 ihltgegvptalisiptryiHspvevahlddleatv 290
                                       +     ++p+  +++  ++iH+  e a++d+l +t+
  gi|300713017|ref|YP_003738829.1| 382 FYNHYYDIPCPSVGPRGDNIHGADEYAEIDSLVQTA 417
                                       44556899***********************99886 PP

>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.7e-05      0.16      24      73 ..     197     253 ..     187     259 .. 0.76
   2 ?   -3.6   0.0       2.2     1e+04       3      20 ..     408     425 ..     406     430 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
                                       EEEEEEEEEEEETTEEEEEEETTSHCCHCCC...T--ECEEEEE....EEEEEE-SE CS
                      Pyridox_ox_2  24 epvilPvnyvvdgdslyfhgakgsrlaaalr...gapvcvvvte....vdglvlars 73 
                                       ep+++P + v  ++ +yf+ +++++ a a+r   g++ +v+++     +d+l+ +r+
  gi|300713017|ref|YP_003738829.1| 197 EPYLIPNIGVASAGVMYFRVTVTGKAAHAARgfqGTNSAVKAAAliqaLDELDQQRK 253
                                       6*****************************988855544433333333777766665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.2
                                       HHHHHHHHC-SEEEEEEE CS
                      Pyridox_ox_2   3 eeilalLdegevgrlafv 20 
                                       +ei++l++++++  la v
  gi|300713017|ref|YP_003738829.1| 408 AEIDSLVQTAQTVALAAV 425
                                       466666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3081.53
//
Query:       gi|300713018|ref|YP_003738830.1|  [L=451]
Description: aminotransferase class-III [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-99  331.8   0.0    5.8e-99  331.5   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
  ------ inclusion threshold ------
      0.085   12.0   0.0       0.12   11.5   0.0    1.3  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.5   0.0  6.5e-103   5.8e-99       8     401 ..      46     439 ..      39     444 .. 0.94

  Alignments for each domain:
  == domain 1  score: 331.5 bits;  conditional E-value: 6.5e-103
                                       -SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT CS
                       Aminotran_3   8 nlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklap 84 
                                        +++++++a+G+ + dvdg+++lD+ ++i v+n+Gh++P v++  +eq+ k++h++   + +e  l+l ekl ++ap
  gi|300713018|ref|YP_003738830.1|  46 RIPIALEEAKGATIRDVDGNTFLDFFAGIGVLNVGHSNPYVLEGTREQLGKITHTI--DFPTEARLDLIEKLREIAP 120
                                       46799***************************************************..999**************** PP

                                       -..S....EEEEESSHHHHHHHHHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSE CS
                       Aminotran_3  85 kgld....kvflansGseAvetAlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpev 157
                                       +gl      vf   sGs+A+e+++Kla++      +t ++ ++af+ga+HG t gals+t+  kkyk+++ p+l +v
  gi|300713018|ref|YP_003738830.1| 121 GGLAgssnVVFGGPSGSDAIEGSIKLAKH------NTGRHGLLAFEGAYHGATSGALSLTAG-KKYKKGYTPLLSDV 190
                                       *9987776777789***************......***************************.************** PP

                                       EEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-T CS
                       Aminotran_3 158 vrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqgegGvvvaspeflaklrelckkhdvllivDEv 234
                                       v+++yp   + +e++++ +a+ +++e+     +++ a++ vEpiqgegGvvv++++fl++lr++++++d+llivDE+
  gi|300713018|ref|YP_003738830.1| 191 VHAPYPTVPTEQERDQALKAVRQKFEDP-YGGTEDPAGIWVEPIQGEGGVVVPPEGFLKGLRKIADDNDALLIVDEI 266
                                       ******9888888888888888888885.4788999***************************************** PP

                                       TTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHHHHHHHHH CS
                       Aminotran_3 235 qtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgshgsTfgGnplacavalavleiiee 310
                                       qtG+GrTG++f+ +h++v+pD +t+aK+l+g  lp+ a++ +++  +++  g+h +Tf Gn+ a++  l ++e ie 
  gi|300713018|ref|YP_003738830.1| 267 QTGLGRTGEWFGSDHFDVTPDAITMAKSLGGSgLPIGAMVYHEK-FDTWDAGGHIGTFRGNTPAMVGGLRAIEYIEA 342
                                       *****************************9855*****998776.68999*************************** PP

                                       TTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC....HHHHHHHHHCTEE-EEETT..TE CS
                       Aminotran_3 311 ekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke....keilkkakekGvlilsaGd..nv 381
                                       ++ll +a ++g++l+ + +e+++  + i +vRg+Gl+i++e+++e+ + +    kei ++  e+Gvl+ saG+  nv
  gi|300713018|ref|YP_003738830.1| 343 HDLLAHATDVGEYLRGRFREVSEVTDRIVDVRGRGLFIGVEFVDESGEPDanvvKEIQTECFENGVLVWSAGRygNV 419
                                       ********************************************999555888999999999*************** PP

                                       EEE---TT--HHHHHHHHHH CS
                       Aminotran_3 382 irllppliitdeeidellei 401
                                       +r++ppl+ t+++++ + +i
  gi|300713018|ref|YP_003738830.1| 420 LRIIPPLVLTKKQAEVGSDI 439
                                       *************9988776 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.4e-05      0.12     165     238 ..     242     310 ..     186     338 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.4e-05
                                       --HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHH CS
                     Aminotran_1_2 165 atleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaa 238
                                       +++  l+ l ++a+ + +ll+vDe+  g+  + + + + +++v ++       +++K++G  G+ +G+ +++++
  gi|300713018|ref|YP_003738830.1| 242 PPEGFLKGLRKIADDNDALLIVDEIQTGLGRTGEWFGSDHFDVTPDAI-----TMAKSLGGSGLPIGAMVYHEK 310
                                       334456778888********************9988898999999755.....***************999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3139.60
//
Query:       gi|300713019|ref|YP_003738831.1|  [L=434]
Description: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-28   97.5   1.4    1.3e-27   96.9   1.4    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    4.2e-17   62.0   0.1    1.1e-16   60.7   0.1    1.8  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
       0.01   15.6   0.1      0.016   14.9   0.1    1.4  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   1.4   2.1e-31   1.3e-27       2     198 ..     105     419 ..     104     427 .. 0.89

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 2.1e-31
                                       EEEES-BSS.TTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT. CS
                                       xxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
                     Peptidase_M20   2 lgsHlDvVp.eeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr. 75 
                                       +g+H+DvV  +e +  w++ p++ t+e++ lyGrG++dmkgg++++l a++al+++ i+++g++ +  + +EE g+ 
  gi|300713019|ref|YP_003738831.1| 105 VGGHIDVVDvTESE--WNRsPWTVTQEEDTLYGRGVADMKGGLASVLIAIEALAENDIELNGDLLFQSTIEEEDGGv 179
                                       69*******77777..*********999*********************************************8777 PP

                                       THHHHHHHHHHTTTCESEEEEEEEESSSBTCHSTETEEEE..................................... CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................... RF
                     Peptidase_M20  76 gGakallegleerekvdavfelhieepgileagklaigvv..................................... 115
                                       gGa ++le   +++ +da++   + ep +l +    +g+                                      
  gi|300713019|ref|YP_003738831.1| 180 GGALSVLE---RGYVPDAAV---VAEPFNLPN----VGIAsagvmyfrvtvpgksvhaawghegvnaignaalvyqa 246
                                       99999999...799999955...999*99993....33435566899****************************** PP

                                       ............................................................................. CS
                                       ............................................................................. RF
                     Peptidase_M20 116 ............................................................................. 115
                                                                                                                    
  gi|300713019|ref|YP_003738831.1| 247 leeldterkahidyepayranpdlegnvtnlnlgmieagdwpstlpaeaimkgrigwppgesraevraqiedavaav 323
                                       ***************************************************************************** PP

                                       ..........EEEEEEE.EEESHEEEC.CHHHHHHHHHHHHHHH.TSCEEEEEESSSBHTHHHH...TTTEEEEEEE CS
                                       ..........xxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
                     Peptidase_M20 116 ..........kvevell.eggapvtln.dsplvkalaeaaeelf.gekvelivsgpggtdarff...agiptvmifg 176
                                                   eve++ ++++p +++   + ++++a+ + e++ g++  ++v g +g d rf+    g+  ++ +g
  gi|300713019|ref|YP_003738831.1| 324 akedswlseyPPEVEWFgWQAEPHEIDsTCE-IATIAKGVGEAVtGRSG-TYVGGNAGLDERFYtlyYGV-DAVSVG 397
                                       ********99899999999999999994444.66666666666658664.444445********988888.6678** PP

                                       SSGGCTTSTTTEEEHHHHHHHH CS
                                       xxxxxxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20 177 pgsglaHspnEyvdledlekgi 198
                                       p++++ H+ +E++ + +l++ +
  gi|300713019|ref|YP_003738831.1| 398 PDGANLHGADEHTTVTSLKETA 419
                                       999************9999876 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.1   1.8e-20   1.1e-16       2     108 ..     209     327 ..     208     328 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.8e-20
                                       EB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.................TCCTCCCCCEECCE- CS
                         M20_dimer   2 ghkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdia............eerslprttlnvtgiegG 66 
                                       +  G++ +++tv gk++H++ ++ g+NAi  +a + ++le+++ + +            ++     t+ln+++ie+G
  gi|300713019|ref|YP_003738831.1| 209 ASAGVMYFRVTVPGKSVHAAWGHEGVNAIGNAALVYQALEELDTERKahidyepayranPDLEGNVTNLNLGMIEAG 285
                                       5679**************************************99999**********997777778*********** PP

                                       CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCSTT CS
                         M20_dimer  67 saknvipdeaeakidiRllpgedpeevleeieeilekeaped 108
                                       +++ ++p+ea +k  i  +pge+++ev+++ie++++++a+ed
  gi|300713019|ref|YP_003738831.1| 286 DWPSTLPAEAIMKGRIGWPPGESRAEVRAQIEDAVAAVAKED 327
                                       **************************************9987 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   2.7e-06     0.016       1      82 [.      90     185 ..      90     266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-06
                                       EEEEEESTTCESEEEEEEEE--B-TTT.............TCC..T---TTTTHHHHHHHHHHHHHCHHGGCCSSEE CS
                     Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvg.............rgp..ifvGAdDnAsgvaalLelarvlaasgsrpkrg 62 
                                       Nv a+++g++   +l +g+H+D v v+             +++     G+ D   g a++L  +++la++  +++ +
  gi|300713019|ref|YP_003738831.1|  90 NVAARIKGGD-GPTLTVGGHIDVVDVTesewnrspwtvtqEEDtlYGRGVADMKGGLASVLIAIEALAENDIELNGD 165
                                       9*********.899************99****8888887633366678*********************99999*** PP

                                       EEEEEESSCSGSSHHHHHHH CS
                     Peptidase_M28  63 vrflffdaEEagllGSkafa 82 
                                       + f  +  EE g +G    +
  gi|300713019|ref|YP_003738831.1| 166 LLFQSTIEEEDGGVGGALSV 185
                                       ****9999999766654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3259.74
//
Query:       gi|300713020|ref|YP_003738832.1|  [L=363]
Description: histone deacetylase superfamily protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-75  254.2   0.0    2.4e-75  253.9   0.0    1.1  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.0   1.3e-79   2.4e-75       1     303 [.      25     315 ..      25     319 .. 0.94

  Alignments for each domain:
  == domain 1  score: 253.9 bits;  conditional E-value: 1.3e-79
                                       SCCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSS CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Hist_deacetyl   1 hpenpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiaskll 77 
                                       hp +p+R++ il+ +++s   ++e +++++p++at++e+++vHs+eY++ +e+ + + +                 +
  gi|300713020|ref|YP_003738832.1|  25 HPDRPERVENILAMINHS---FPERSQIVEPERATRAEIERVHSSEYIDWIEEFCADGGGRI--------------E 84 
                                       8999*****999999997...4577779*************************998876653..............3 PP

                                       SSSTHCTTTCCHHHHHHHHHHHHHHHHHHTTSSSEEEETTSS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-E CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Hist_deacetyl  78 dddtpvspktlkaallavgavleavdavlsgsvkaafvlvrPpgHHakaseasGFClvNnvaiaikylqakhelkrv 154
                                       d+ t +++ t+++a++a+ga++ av+  ++gs +  ++l+rP gHHa+++ a GFC++Nn+aia++ + +  +++rv
  gi|300713020|ref|YP_003738832.1|  85 DTTTGLNEATFDTARVAAGAAIGAVHDSMEGSQDLPYALCRPSGHHAQPTCADGFCFLNNAAIAAEAAID-MSADRV 160
                                       56789**************************99999**********************************.7899** PP

                                       EEEE-SSS--HHHHHHCTT-TTEEEEEEEE-C....CTSTTSS--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHH CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Hist_deacetyl 155 ailDvDvHhGnGteeafysdpdvltlSiHrye....gifyPgtgaledlgegkgkgfnlnvpleegtgdeeylkvfe 227
                                       ai+D+DvHhGnGt+eafy+++dvl++S H+ +    +++ P++g+le++g+++g+g+n+nvpl++gtgd+ y ++f+
  gi|300713020|ref|YP_003738832.1| 161 AIIDWDVHHGNGTQEAFYDRDDVLFVSAHHDHgswhPEYHPQEGSLEEVGTNRGEGYNVNVPLPPGTGDRGYNHLFD 237
                                       ******************************95456688999************************************ PP

                                       HCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-.G..EEEEE-S---HHHHHHHHHH CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxx RF
                     Hist_deacetyl 228 eilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkv.k.kvvllleGGYnlealaravta 302
                                       +++ p+++ef+P +i+vsaG Da + dp g+  ++  g+ +l +++++lad++ + ++ l+ eGGY++++l+ a+  
  gi|300713020|ref|YP_003738832.1| 238 RLVDPIVSEFDPTVIIVSAGQDAGAADPNGRNLVTRGGFRQLGSRVKTLADQTaDgQLALIQEGGYQPSHLSFATLG 314
                                       *****************************************************999************999877666 PP

                                       H CS
                                       x RF
                     Hist_deacetyl 303 v 303
                                       v
  gi|300713020|ref|YP_003738832.1| 315 V 315
                                       5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 2483.34
//
Query:       gi|300713021|ref|YP_003738833.1|  [L=191]
Description: pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-22   79.1   0.0    3.7e-22   78.8   0.0    1.1  1  Pyridox_ox_2    Pyridoxamine 5'-phosphate oxidase
    8.9e-06   25.5   0.0    1.5e-05   24.7   0.0    1.3  1  FMN_bind_2      Putative FMN-binding domain
     0.0014   18.8   0.0     0.0021   18.2   0.0    1.4  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Pyridox_ox_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   6.2e-26   3.7e-22       5     141 .]      26     171 ..      22     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 6.2e-26
                                       HHHHHHC-SEEEEEEEETTEEEEEEEEEEEETTE..EEEEEETTSHCCHCCC...T--ECEEEEEEEEEEE-SE.GG CS
                      Pyridox_ox_2   5 ilalLdegevgrlafvddgepvilPvnyvvdgds..lyfhgakgsrlaaalr...gapvcvvvtevdglvlars.fn 75 
                                       il++L+++e+g+l++ dd+ p+++   +v+d+d+  +++hga  +r + + +    ++++++ +e  ++++a +  n
  gi|300713021|ref|YP_003738833.1|  26 ILQFLSDQETGVLGLIDDNSPHLVTQLFVYDDDKgvIFMHGAQDGRAYSLVEngdRLRASFTTSEKGRYIPADEpVN 102
                                       789****************************999999***************954445******************* PP

                                       .EEEEEEEEEEEEEEEE--HHHHHHHCCCHHHHHSTTTGGCSB..---CCCCCTEEEEEEEEEEEEEEE CS
                      Pyridox_ox_2  76 .slnyrSVvvrGraeevtdeeekaealellvekivpgrwenlr..pptrkelkatsvlrlkieevsgrr 141
                                        +++y SVv++G++ ++t e+ek+++le+++ k++p+  +     ++t++++  t+v+rl++e+ sg++
  gi|300713021|ref|YP_003738833.1| 103 fTVEYSSVVAYGTIDLLTGEAEKQRVLERFMAKFAPQLTKGEDykEMTEESIGRTAVYRLDVESWSGKK 171
                                       ************************************886633345999999999*************95 PP

>> FMN_bind_2  Putative FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.6e-09   1.5e-05       8     151 ..      19     153 ..      15     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.6e-09
                                       XX--HCHHHHHHHHS-EEEEEEEETTEEEEEEEE-EE...-TTSSEEEEEEETTSGGGGGT.TTS-EEEEEEEEEE. CS
                        FMN_bind_2   8 aeedleelrqlirenplgtLvtaiesglqashiPflldeeekgkgkLrgHlaraNpqakaleeeeevlvvfqgpda. 83 
                                       a++dle + q+++++  g+L   +++ ++     f++   +++kg++ +H a+       +e++++  + f+  ++ 
  gi|300713021|ref|YP_003738833.1|  19 AVNDLEWILQFLSDQETGVLGLIDDNSPHLVTQLFVY---DDDKGVIFMHGAQDGRAYSLVENGDRLRASFTTSEKg 92 
                                       67999*********************99999989999...556666**************************99997 PP

                                       .EE-CCCSSTTS-....--EEEEEEEEEEEEEEE---HHHHHHHHHHHHHHHS---...--S------- CS
                        FMN_bind_2  84 .YvsPswYtekkettkvvPTWnYaaVhvyGkakviedeeelrkqledltdqaEaerkkpwkvedapeky 151
                                        Y+ ++          v  T +Y++V +yG++ +++ e+e++++le++++++ ++  k  +++++ e+ 
  gi|300713021|ref|YP_003738833.1|  93 rYIPADEP--------VNFTVEYSSVVAYGTIDLLTGEAEKQRVLERFMAKFAPQLTKGEDYKEMTEES 153
                                       78876543........456********************************998666666666666555 PP

>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.6e-07    0.0021       4      68 ..      25      88 ..      23     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.6e-07
                                      HHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEE CS
                    Putative_PNPOx  4 elreflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallfld 68
                                       +++fl++++++vl+ +  d++P++++ l++++d++++i +++++d r +  +e+  r   +f  
  gi|300713021|ref|YP_003738833.1| 25 WILQFLSDQETGVLGLI-DDNSPHLVTQLFVYDDDKGVIFMHGAQDGRAYSLVENGDRLRASFTT 88
                                      6889*************.7777**************99999***999999877777775555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.51
# Mc/sec: 1117.56
//
Query:       gi|300713022|ref|YP_003738834.1|  [L=273]
Description: Creatininase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-58  196.5   0.4    5.2e-58  196.4   0.4    1.0  1  Creatininase  Creatinine amidohydrolase


Domain annotation for each model (and alignments):
>> Creatininase  Creatinine amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.4   0.4   2.9e-62   5.2e-58       2     241 .]       9     250 ..       8     250 .. 0.91

  Alignments for each domain:
  == domain 1  score: 196.4 bits;  conditional E-value: 2.9e-62
                      Creatininase   2 eltwpeveea..lkeddvailPvGstEqHGphlplgtDtliaealaervaeklgakalvlPtlpyGvseehlgfpGT 76 
                                       el+ p+ve +   +e+++a++PvG tEqHG+hl +gtD++i+++++er+ae+++  alv P+++yG+s+ h g++G 
  gi|300713022|ref|YP_003738834.1|   9 ELRHPQVESYldRAETPTALIPVGTTEQHGEHLAMGTDAFIPTEICERIAEDVD--ALVGPPINYGASDMHAGYAGI 83 
                                       78999*****7556669***********************************99..9******************** PP

                      Creatininase  77 islspetliavlrdileslarhGfrrivlvngHggnsaalkeaarelraehdaaavrvtaaekelaaalkleeaae. 152
                                        +l   tl+ v+ di+ sla++Gf+ iv+++gH  n +a k+ a+++ ++ ++        e+++ a+ ++ + +  
  gi|300713022|ref|YP_003738834.1|  84 TYLTYRTLATVVHDIAYSLAEAGFTDIVFLSGHLTNDWAAKVGANQASHDLPE--------ENYVYAFPYWDALSGd 152
                                       *********************************************88888743........3566666788999998 PP

                      Creatininase 153 aaeeseeeegggHAgelEtSlmlalrpelVrmdraedpeeaklakeg.........vstaedaeelspsGvlGdpsk 220
                                       + ee+ + ++g+HA+  Et+ ++a++++lV++++ + +++  + + +            +  + ++s++Gv+Gdps+
  gi|300713022|ref|YP_003738834.1| 153 DMEEYLSFDAGWHANIGETAAVMAIDEDLVDLEETAFDAPDLPMDIEnpaalldhlLIGKGAYYRISETGVWGDPSD 229
                                       999999999**********************88855555544444448*******99999999999*********** PP

                      Creatininase 221 ataekGealleaaveelaell 241
                                       atae Ge+++e++++++ael+
  gi|300713022|ref|YP_003738834.1| 230 ATAELGEEYFETITHAVAELI 250
                                       ******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1837.53
//
Query:       gi|300713023|ref|YP_003738835.1|  [L=445]
Description: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-31  107.7   0.0    8.7e-30  104.0   0.0    2.0  1  Peptidase_M20  Peptidase family M20/M25/M40
    4.4e-09   36.2   0.0    5.1e-08   32.8   0.0    2.4  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0   9.8e-34   8.7e-30       1     206 [.      89     441 ..      89     442 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 9.8e-34
                                       EEEEES-BSS.TTCG.GGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSST CS
                                       xxxxxxxxxx.xxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20   1 llgsHlDvVp.eeet.dgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEgg 74 
                                       l+++H D V   ee  ++w + p+ + +edG+lyGrGa+dmkg   a++ a++a+ ++  ++ g++ + +++ EE +
  gi|300713023|ref|YP_003738835.1|  89 LFNGHSDIVDvSEEAaENWAKdPWDPIIEDGYLYGRGANDMKGPNTAMIWAAKAVMEADTELSGDLLMSIVVGEELN 165
                                       699********7777699*********************************************************76 PP

                                       T..THHHHHHHHHHTTTCESEEEEEEEESSSBTCHSTETEEEE.................................. CS
                                       x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................. RF
                     Peptidase_M20  75 r..gGakallegleerekvdavfelhieepgileagklaigvv.................................. 115
                                           G+ a ++ ++ +e+++  + ++  ep++le +++++                                     
  gi|300713023|ref|YP_003738835.1| 166 QqeYGSIAATDAFL-EEGIEIPI-CINTEPTNLEIHTKSAATFdftieiqgkevhtsqknltrypqrygipvgqdvg 240
                                       66899999999777.46777777.999*******7774444448888899*************************** PP

                                       ............................................................................. CS
                                       ............................................................................. RF
                     Peptidase_M20 116 ............................................................................. 115
                                                                                                                    
  gi|300713023|ref|YP_003738835.1| 241 vdaamimadilyelrdlehqwnlryrdqiygsggyqtpdtqgvgpiginctimeagdyiaaipghakieghvfyppf 317
                                       ***************************************************************************** PP

                                       .............................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEES.SSBH CS
                                       .............................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
                     Peptidase_M20 116 .............................kvevelleggapvtln.dsplvkalaeaaeelfgekvelivsg.pggt 161
                                                                    + +++ + + +p++++ d+p  kal  a+e+++   ++++ sg  +  
  gi|300713023|ref|YP_003738835.1| 318 vddrelwdemqevvetlaatndwlkehppRMSWKSVFDWPPYEVPvDHPGCKALGTAIEATLD--EQPVYSGfKAVA 392
                                       ***************************987999999************************755..667777888*** PP

                                       THHHH.TTT.EEEEEEESSG..GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                                       xxxxx.xxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                     Peptidase_M20 162 darff.agi.ptvmifgpgs..glaHspnEyvdledlekgikvlarlle 206
                                       d +++ ++     + +gpg+   +aH+p+E++  e+l +++kv+a++++
  gi|300713023|ref|YP_003738835.1| 393 DNSYIqHECgVDTISMGPGDisMGAHGPDEHIPTEQLMNATKVYAAMIL 441
                                       *****53332133459***66899**********************996 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   5.7e-12   5.1e-08      31     106 ..     230     336 ..     198     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 5.7e-12
                                       H...............HHHHHHHCSCTTEEC.....................TCCTCCCCCEECCE-CCCCEESSEE CS
                         M20_dimer  31 e...............klarllaeledeegdia................eerslprttlnvtgiegGsaknvipdea 76 
                                       +               ++a++l el+d+e++++                +++ +++  +n+t+ e+G+ + +ip++a
  gi|300713023|ref|YP_003738835.1| 230 RygipvgqdvgvdaamIMADILYELRDLEHQWNlryrdqiygsggyqtpDTQGVGPIGINCTIMEAGDYIAAIPGHA 306
                                       5555555555555555************************************************************* PP

                                       EEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
                         M20_dimer  77 eakidiRllpgedpeevleeieeilekeap 106
                                       + +  +  +p+ d  e+ +e++e++e++a+
  gi|300713023|ref|YP_003738835.1| 307 KIEGHVFYPPFVDDRELWDEMQEVVETLAA 336
                                       **************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 2786.66
//
Query:       gi|300713024|ref|YP_003738836.1|  [L=679]
Description: tyramine oxidase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.9e-151  503.6   0.1   5.1e-151  503.2   0.1    1.1  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
    1.7e-15   57.0   0.0    3.1e-15   56.2   0.0    1.4  1  Cu_amine_oxidN2  Copper amine oxidase, N2 domain
    4.7e-13   49.4   0.0    1.5e-12   47.8   0.0    1.9  2  Cu_amine_oxidN3  Copper amine oxidase, N3 domain


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.2   0.1  8.5e-155  5.1e-151       2     410 .]     232     657 ..     231     657 .. 0.96

  Alignments for each domain:
  == domain 1  score: 503.2 bits;  conditional E-value: 8.5e-155
                                       ----TT---SEEETTTEEEETTEEEEEEEETTTEEEEEEEEETT....EEEEEEEEEEEEEEEE--SSHHHHH-EEE CS
                     Cu_amine_oxid   2 evvqpeGpsfkvdegnlvewqkWsfrvgfnrreGlvlhdvrykg....rrilyrlslsemvvpYgdprppasrkaaf 74 
                                       +vvqpeGps++v +gn+vewqkW++rvgfn+reGlvl++v y++    r+il r+s+ e+v+ Y d++p + +ka f
  gi|300713024|ref|YP_003738836.1| 232 NVVQPEGPSWEV-DGNTVEWQKWHIRVGFNHREGLVLYNVAYDDdgeeRSILRRASWPEVVTAYNDSDPDHDWKAPF 307
                                       89**********.7*************************************************************** PP

                                       GGGT.-SGGG-----TTTSS-TT-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S....EEEE--EEEEEE CS
                     Cu_amine_oxid  75 DlgeyglGklansLelgcDClgeityldavladssgepvtiknaiCifEedagilwkHtdfrtgraevtrnreLvvr 151
                                       D+geyg+G+lansL++gcDClg+++y+da l+d +gep++i+naiC++Eed+g lw+H+d+r ++ ev+rnr+Lv++
  gi|300713024|ref|YP_003738836.1| 308 DVGEYGIGRLANSLTEGCDCLGYMHYWDALLNDGDGEPQVIPNAICLHEEDYGTLWRHHDWRVDDDEVRRNRRLVIS 384
                                       ***************************************************************************** PP

                                       EEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE-T......GG--EEETTEE---EEEEEEEEEEE-T.SSEEE CS
                     Cu_amine_oxid 152 tiatvgNYdYifdyiFkqdGsievevratGilstaalaeeee.skygtrvapgvlasiHqHlfslrvDldidgekns 227
                                       +i+t+gNYd++f+++F+qdGsie +vr+tG+  t  l+++++ + y++ v p+  + +HqH+f++r+D+++dg++n+
  gi|300713024|ref|YP_003738836.1| 385 FISTIGNYDFAFYWYFYQDGSIEGQVRLTGCNATGLLETDQQeTGYAEMVGPSHKSMLHQHVFNCRLDFELDGRRNT 461
                                       **************************************888448********************************* PP

                                       EEEEEE............-T...TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEEEEEEEE-.TTS-EE CS
                     Cu_amine_oxid 228 vveeel............vp.eepelgeenpagnafkvektvletekeaaldldpeknrvlkivnenkkn.klgepv 290
                                       v e++l             p  e++  + np+gna +ve+t +e+ek+a++ ++++++r+++i+ne+  n ++  pv
  gi|300713024|ref|YP_003738836.1| 462 VREVNLksvdygpdgydpTPhAESDRMRLNPHGNAAYVERTRFEREKDAQRMTNTHSGRYWEIINEDVLNeATASPV 538
                                       ******999*9999987733323334458************************9999******************** PP

                                       EEEEE-S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS.---GGGG-.S--B-SSEEEEE CS
                     Cu_amine_oxid 291 gYklvpssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskgepvglakwvednesieneDlVv 367
                                       gY+l  +s ++++  ++++s++akra fa +hlwvt++ d+e y+agey+nq+ g  +gl++w+++n+si+neD+Vv
  gi|300713024|ref|YP_003738836.1| 539 GYRLRGKSGTNTAFAMQPGSSMAKRAGFAMNHLWVTQHADDEIYPAGEYPNQNPGG-EGLPSWTAENRSIANEDIVV 614
                                       ****998889999****************************************994.7******************* PP

                                       EEEEEEEE---GGGSS-TTTSEEEEEEEEES-SSS-GGGG-S- CS
                     Cu_amine_oxid 368 WvtlGltHvpraeDfPvmpvetvsflLkPvnFfdenpaldvpp 410
                                       W++++ tHv  +eD+Pv pv+++sf+L+P++Ff+enp++dvpp
  gi|300713024|ref|YP_003738836.1| 615 WYNMCQTHVGVPEDWPVLPVKMLSFKLEPAGFFEENPSIDVPP 657
                                       *****************************************96 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   5.1e-19   3.1e-15       1      85 [.      11      95 ..      11      97 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 5.1e-19
                                      HHHHHHHHHHHHHCCCCCCCCTCT-TTSEEEEEEEEE---HHHHHHHHHCH---S-EEEEEEEEE..TSSSSEEEEEEE CS
                   Cu_amine_oxidN2  1 hpLdaltaaeinkvesilkssaletskknsffeveLeePdKkavlqflekgeppppRkAsvvilf..GkqtkelvvdLa 77
                                      hpLd+lt+ ei+++++i+ +   e   +++f e++L eP+K+a ++f e+ ++ p R+A+v++++  ++ ++e++  L 
  gi|300713024|ref|YP_003738836.1| 11 HPLDPLTPTEIEQAREIVDQGT-EVTDETRFIEITLAEPPKNALREF-EQTGTSPVRQARVIVRDkdAQRSYEGTASLD 87
                                      9******************999.9999********************.****************722555699999999 PP

                                      EEECCSEE CS
                   Cu_amine_oxidN2 78 tgkllspr 85
                                       g l++++
  gi|300713024|ref|YP_003738836.1| 88 DGDLIEWT 95
                                      99999987 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   2.6e-16   1.5e-12       3      95 ..     104     202 ..     102     206 .. 0.91
   2 ?   -3.4   0.0       2.2   1.3e+04      51      74 ..     281     307 ..     264     308 .. 0.56

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 2.6e-16
                                       --HHHHHHHHHHHHTGGGGHHHHHHHHTTT.T---EEEE--SS-SSST....T--EEEEEEEE--SSS....-GCGS CS
                   Cu_amine_oxidN3   3 vlleelaeieevikelpqfkealkkrgienldkvvltpltvgyrgeks...egkRllkalvyyrtesa....nlyah 72 
                                       +  ee++e+ee++ ++++f+ea++krg +++d  ++t++++gy+ + +    ++Rl+  + +++ +++    + y +
  gi|300713024|ref|YP_003738836.1| 104 MIGEEFVEVEETVTSNAEFREAVQKRG-ADPDLAIVTAWSAGYDFVPEdidRSRRLAHGIAWVNATDDdegaEAYNR 179
                                       6679***********************.99*************977665669*******99999887778889**** PP

                                       EEE.EEEEEE--SSSGGG-EEEE CS
                   Cu_amine_oxidN3  73 PiegLellvDleakkvieitdqk 95 
                                       P+ g+++ vDl+ ++vi+i d++
  gi|300713024|ref|YP_003738836.1| 180 PLSGIHAWVDLDDREVIKIVDTG 202
                                       *******************9876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.2
                                       .T--EEEEEE...EE--SSS-GCGSEE CS
                   Cu_amine_oxidN3  51 egkRllkalv...yyrtesanlyahPi 74 
                                         +R++++ v   y +++ ++ +  P 
  gi|300713024|ref|YP_003738836.1| 281 ILRRASWPEVvtaYNDSDPDHDWKAPF 307
                                       457888864422255555568888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4673.06
//
Query:       gi|300713025|ref|YP_003738837.1|  [L=685]
Description: hydantoin utilization protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-96  321.4   2.3    2.9e-95  318.9   0.1    2.1  2  Hydantoinase_A  Hydantoinase/oxoprolinase
    8.3e-54  182.0   3.4    2.8e-52  177.0   0.3    2.9  3  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
     0.0069   15.9   0.7      0.028   13.9   0.3    2.1  2  ROK             ROK family
  ------ inclusion threshold ------
      0.022   14.3   0.1       0.36   10.3   0.0    2.2  2  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4     0.019        86      82     100 ..      12      30 ..       2      60 .. 0.79
   2 !  318.9   0.1   6.5e-99   2.9e-95       1     289 [.     208     493 ..     208     495 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.019
                    Hydantoinase_A  82 ItfDmGGTstDvslikdge 100
                                       +++D+GGT tD   i++ +
  gi|300713025|ref|YP_003738837.1|  12 VGIDTGGTFTDFVSIDEES 30 
                                       899***********99654 PP

  == domain 2  score: 318.9 bits;  conditional E-value: 6.5e-99
                    Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgakarlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaatsklag 77 
                                       r++t++ ++yl+p +++y++++e+++++r++ ++  +m+s+Gg++  d+ar++pv+ti SGPa+Gvv a +++   g
  gi|300713025|ref|YP_003738837.1| 208 RASTTLADSYLKPDMQSYIDEFEHRMDDRDI-TNTAIMKSNGGVMFPDAARQNPVHTITSGPAGGVVSARYFGSSFG 283
                                       899***************************9.8999***************************************** PP

                    Hydantoinase_A  78 ekkvItfDmGGTstDvslikdgevevsletei.agvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgp 153
                                       +++++ +DmGGTs D+s + dge + +++ e   g+++++p++di+t+gagGgsi++ degg l+vgp+saga+pgp
  gi|300713025|ref|YP_003738837.1| 284 FDDMVSIDMGGTSCDLSILTDGEQNYTTNFELeFGLPINVPMIDIATIGAGGGSIAWIDEGGLLNVGPRSAGAQPGP 360
                                       ***********************99888888879******************************************* PP

                    Hydantoinase_A 154 acyrkGgteltvTDanlvLGrlqpedflsgpdgdqkldvelarrafeelakelnlkveevAegilsvavenmanavr 230
                                       acy++Ggt+++vTDa+lvLGrl+p++fl   +g+  ld+e+a++ +eel++++++++ee+A+ +l++ ++nm na+ 
  gi|300713025|ref|YP_003738837.1| 361 ACYGRGGTNPAVTDAHLVLGRLNPDFFL---GGKLDLDEEAAYKTLEELGDKIEMSAEEAAASVLQITNNNMYNALS 434
                                       ****************************...********************************************** PP

                    Hydantoinase_A 231 klsvergldpkeltlvvfGGaGaqhaaalaeelgvkkvivppyagvlsalGmalAdvre 289
                                         +verg+dp+++++v+fGGaG++haa+la++ g+++++vp ++gv+sa G+++Ad r 
  gi|300713025|ref|YP_003738837.1| 435 AELVERGHDPQQFAMVSFGGAGPLHAAELARKSGISNIVVPVHPGVASATGLVMADGRV 493
                                       *******************************************************9775 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.0   0.3   6.3e-56   2.8e-52       1     174 [.      11     184 ..      11     187 .. 0.96
   2 !    4.6   0.0    0.0051        23       2      20 ..     288     306 ..     287     315 .. 0.82
   3 ?   -1.9   0.0      0.51   2.3e+03     116     126 ..     486     496 ..     402     532 .. 0.56

  Alignments for each domain:
  == domain 1  score: 177.0 bits;  conditional E-value: 6.3e-56
                        Hydant_A_N   1 rigIDvGGTfTDavaldekeeevavlKllstpdavaegirealeevleesiprtskidvvrmGTTvatNallerkge 77 
                                       r+gID+GGTfTD+v +de++++++++K+ stp++++ g++++++e++     +t++++ +++GTTv tNal+er+g+
  gi|300713025|ref|YP_003738837.1|  11 RVGIDTGGTFTDFVSIDEESGTLTITKTSSTPQNPIDGVVNSIDESTIT--NETDAVSQLIHGTTVTTNALIERTGA 85 
                                       79*******************************************9655..448*********************** PP

                        Hydant_A_N  78 rvaLittkgfrdlleigrqnrpdlfelrik..kplvlyeevvevderveadgevlkpldeeevrealkalkaagves 152
                                       +++ itt gf d+  i+r nr+d ++lr    +plv +++ + ++erv+++gevl+plde+ +re++++l+++g++ 
  gi|300713025|ref|YP_003738837.1|  86 EIGYITTDGFTDVPFIQRINRKDHYDLRWDkpEPLVERKNCHGITERVNYKGEVLEPLDEAGLRETVRELSEQGIDT 162
                                       **************************99997788999999************************************* PP

                        Hydant_A_N 153 iavvllhSylnpehElrvaeia 174
                                       +av++l+Sy+npehE+r +ei+
  gi|300713025|ref|YP_003738837.1| 163 YAVIFLFSYVNPEHEQRTQEII 184
                                       ********************98 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0051
                        Hydant_A_N   2 igIDvGGTfTDavaldeke 20 
                                       + ID+GGT  D+ +l+++e
  gi|300713025|ref|YP_003738837.1| 288 VSIDMGGTSCDLSILTDGE 306
                                       78**********9999764 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.51
                        Hydant_A_N 116 vvevdervead 126
                                        v +d+rv+++
  gi|300713025|ref|YP_003738837.1| 486 LVMADGRVDYE 496
                                       23334444444 PP

>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   6.2e-06     0.028       2      95 ..      12     107 ..      11     116 .. 0.85
   2 ?   -0.9   0.0      0.21   9.3e+02       2      25 ..     288     310 ..     287     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
                                       EEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHH.HHHCCCHCCHTEEE.EEEEEESSEEETTCCEBS CS
                               ROK   2 igidiGgtkialalvdeegeilarekvetptetteetlvdaia.elvdeaerkadeli.avgigspGlisdksgkiv 76 
                                       +gid Ggt + +  +dee+ +l   k + + +++ +++v++i+ + ++++ +++ +li +  +   +li+++   i 
  gi|300713025|ref|YP_003738837.1|  12 VGIDTGGTFTDFVSIDEESGTLTITKTSSTPQNPIDGVVNSIDeSTITNETDAVSQLIhGTTVTTNALIERTGAEIG 88 
                                       79************************98888888888888886257888889999999899********99999999 PP

                                       SGGCGCCCCTTHHHHHHHH CS
                               ROK  77 stpnitwenfdlvekleer 95 
                                       ++   +  ++++ + ++ +
  gi|300713025|ref|YP_003738837.1|  89 YITTDGFTDVPFIQRINRK 107
                                       9999888999999888776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.21
                                       EEEEE-SSEEEEEEEETTS-EEEE CS
                               ROK   2 igidiGgtkialalvdeegeilar 25 
                                       ++id+Ggt   l +++ +ge+ ++
  gi|300713025|ref|YP_003738837.1| 288 VSIDMGGTSCDLSILT-DGEQNYT 310
                                       79*********99988.5665555 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     8e-05      0.36       1      45 [.      12      54 ..      12     182 .. 0.79
   2 ?    2.1   0.0     0.025   1.1e+02       3      30 ..     290     390 ..     288     549 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8e-05
                                      EEEEE-SSEEEEEEEETTTEEEEEEEE--..........TTS-HHH......... CS
                       BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgitns..........anlesvrfeaaekvle 45
                                      vGiD G+T t +v +de++  l+ ++t s          +            ++ 
  gi|300713025|ref|YP_003738837.1| 12 VGIDTGGTFTDFVSIDEESGTLTITKTSStpqnpidgvvN------------SID 54
                                      8*****************9988888888844444444431............443 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.025
                                       EEE-SSEEEEEEEETTTEEEEEEEE--.................................................. CS
                       BcrAD_BadFG   3 iDgGsTttkavlmdekgevlgrgitns.................................................. 29 
                                       iD+G+T++   ++++ ++  ++ +                                                     
  gi|300713025|ref|YP_003738837.1| 290 IDMGGTSCDLSILTDGEQNYTTNFELEfglpinvpmidiatigagggsiawideggllnvgprsagaqpgpacygrg 366
                                       9*******999999998855554444455555555555555555555555555555555555555555555555555 PP

                                       .......................T CS
                       BcrAD_BadFG  30 .......................a 30 
                                                               
  gi|300713025|ref|YP_003738837.1| 367 gtnpavtdahlvlgrlnpdfflgG 390
                                       555555555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4853.52
//
Query:       gi|300713026|ref|YP_003738838.1|  [L=602]
Description: 5-oxoprolinase (ATP-hydrolyzing) [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.9e-177  590.2   0.0   3.3e-177  590.0   0.0    1.0  1  Hydantoinase_B  Hydantoinase B/oxoprolinase
  ------ inclusion threshold ------
      0.071   12.8   0.0       0.11   12.1   0.0    1.2  1  MMACHC          Methylmalonic aciduria and homocystinuria typ


Domain annotation for each model (and alignments):
>> Hydantoinase_B  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  590.0   0.0  3.7e-181  3.3e-177       1     516 []      16     549 ..      16     549 .. 0.96

  Alignments for each domain:
  == domain 1  score: 590.0 bits;  conditional E-value: 3.7e-181
                    Hydantoinase_B   1 DpitlevfrnrlmsiaeemgrtlqrtaiSpnikerlDfscalfdadgelvaqaphipvhlgsmseavkavlekf.eg 76 
                                       D++tl+ +++ l si++emg  l++ta+Sp+++e lDfsca+fdad e++ qa+ +p  +g+m++ v++++e++ e+
  gi|300713026|ref|YP_003738838.1|  16 DQVTLNTVSKNLVSICREMGINLKNTAYSPIFNEGLDFSCAVFDADAEMIGQAEFCPAQIGAMPFIVEWCVEELgED 92 
                                       89************************************************************************666 PP

                    Hydantoinase_B  77 elkpGDvlltNdPyaggtHlpDitvitPvfhegelvffvasraHhaDiGGitpGsmppdateifeEGlrippvklve 153
                                        + pGDv+l+NdPy+gg H+p   v++P f++gelv+f+as++H+a+iGG+tpG++++date+f+EG+r+ppvk++e
  gi|300713026|ref|YP_003738838.1|  93 AFTPGDVVLHNDPYRGGCHIPEHFVMKPAFVDGELVGFAASIGHMAEIGGKTPGGFAADATEVFQEGYRLPPVKIIE 169
                                       8**************************************************************************** PP

                    Hydantoinase_B 154 egeleedvlelllanvRtpednlgDlkAqiaanqvgerrlkelieeyGldtveaamdeildnaeravraalaelpdg 230
                                       +ge+ e++++++l+nvRtp+ + gDl+A i+++++g++rl+el+ +yG ++++++++++++++er++r+ ++++p+g
  gi|300713026|ref|YP_003738838.1| 170 GGEDVESIWKIILNNVRTPRVTYGDLRALISSVDLGQERLEELVGRYGDEEFTDIIEDVQTYSERRMRSFIESIPNG 246
                                       ***************************************************************************** PP

                    Hydantoinase_B 231 tyeaedyldd.g.....ipikvtvtidgdeatvDftgtspqvkgniNaplavtlsaviyvlrclvde..diplNeGc 299
                                       tye  dy+dd g     ++++v+++i++de++ D++gt++q++g+iNa++ vt sa++ ++ +l d   d+p+N+G+
  gi|300713026|ref|YP_003738838.1| 247 TYEGVDYMDDdGindgpFKLHVNMEIRDDEVIADWNGTDDQTDGPINATFGVTSSATWNAILQLYDGegDMPVNKGS 323
                                       ********9977777777999999***************************************9976458******* PP

                    Hydantoinase_B 300 lrpievklpegsllnpsepaavvggnvetsqrvvdvvlkalaqalpervaAasqgtmnnltfggvderggeffgyye 376
                                       ++pi+v++p+g++ n ++p++ vggn+et  r+vd++++a+a+ lp++vaAa  +t+ n+ fgg ++++ge+++ y 
  gi|300713026|ref|YP_003738838.1| 324 YEPIHVIAPPGTIANVDYPKPEVGGNTETHPRMVDTIYRAMAEPLPNKVAAADGSTCMNFLFGGEHPDTGEPYVNYH 400
                                       ***************************************************************************** PP

                    Hydantoinase_B 377 tiagGaGArpgkdGasavhvhmtntrntdvEilErryPvlverfelrpdsgGaGkyrGGdGvvreieflepevtvsi 453
                                         ++G+G+rp +dG + v v+++n+rnt+vE++E+ryP+l +++elr+dsgG+G+yrGG+G++r +e+++p++tvs+
  gi|300713026|ref|YP_003738838.1| 401 LEGMGWGGRPYGDGNDSVIVVNGNCRNTPVEVFETRYPWLTKKYELRQDSGGPGEYRGGLGIERIVEARAPQITVSA 477
                                       ***************************************************************************** PP

                    Hydantoinase_B 454 lserrvfapwGlaGGepGargrvvl....nllvr.........geeenlggkat.velkagdvlvietpGGGGyGdp 516
                                       l +r+++apwGl+GGe+G ++++++    +             g  ++ ++k   v++ +gd+++i++pGGGGyGdp
  gi|300713026|ref|YP_003738838.1| 478 LFDRMKNAPWGLKGGEKGGKSSITVersdD---DefrtfdeafG--TDSPSKFAdVKVTEGDRVCIRSPGGGGYGDP 549
                                       **********************88544551...14556766432..4445788889*******************97 PP

>> MMACHC  Methylmalonic aciduria and homocystinuria type C family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05      0.11     147     207 ..     180     240 ..     177     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
                                       EEEEEEE-TT-----------SHHHHHHHHHHHHHHGGG-GGGGTT--SS---HHHHHHHH CS
                            MMACHC 147 lifkdvevpeleqkepvdvvkteekrielLekfnfsWkdwsyrdvvevkerYSeeqkeyfs 207
                                       +i+++v++p+++  + +  +++ +  +e Le+   ++ d ++ d++e +++YSe+++  f 
  gi|300713026|ref|YP_003738838.1| 180 IILNNVRTPRVTYGDLRALISSVDLGQERLEELVGRYGDEEFTDIIEDVQTYSERRMRSFI 240
                                       8999**************************************************9987664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4315.19
//
Query:       gi|300713027|ref|YP_003738839.1|  [L=74]
Description: hypothetical protein HacjB3_18528 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 570.90
//
Query:       gi|300713028|ref|YP_003738840.1|  [L=191]
Description: amidase, partial [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-06   26.3   0.0    3.6e-06   26.2   0.0    1.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     2e-10   3.6e-06     203     388 ..       1     186 [.       1     191 [] 0.75

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2e-10
                                       HHHHHBS--TT-TTS----..HHHHHHHHCTT---TT-EEEEEGGGCSS--.-CCHHHHHHHHHHHHHCTT-EEEEE CS
                           Amidase 203 llrvilgedpkdstssvip..eesedlaeelkkslkglriGvvkedgvasl.dpevqravekalkaLeeaGhevvev 276
                                       +l+vi+g+dp+d+++++ +   ++  ++  + + l+g riG++++ +   + +++v ++ e+a+  L+++G++ +ev
  gi|300713028|ref|YP_003738840.1|   1 MLDVIAGYDPEDPSTAKGVehIPDSYTDYLNPTGLDGARIGILRTVFSSGPeSDPVVEVAEEAIGDLKALGAKTIEV 77 
                                       699*************9888656666777788899***********96555256788999***************** PP

                                       E-C.CGGGHHHHHHHHHHHHHHHHTTT-SSSSS.---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCC CS
                           Amidase 277 elp.sleealslyylilvaeassnlarylgvry.erlsetkvlsellpksraellgeevkrrielgnyalsaeassk 351
                                       + + +++e+++ +y   +++     +     +y + l     ++++     a+++ e+++  ++      s +++ +
  gi|300713028|ref|YP_003738840.1|  78 DAEiDVDELIDSFYVGNFEQQERF-N-----EYlDSLGSGAPIETFEDFVEADEYHESLESGLQAALEIESPTDEPE 148
                                       965389999998888888666544.3.....3444455555556677777788888888888888887777776555 PP

                                       CHHHHHHHHHHHHHHHHHHCCC..BSEEEEESSSSS--B CS
                           Amidase 352 yylkaqkvrrllrrefakafee..lDvllsPtaptpapr 388
                                       y+++ ++++ ++++++  ++ +  lD+ ++P   +   +
  gi|300713028|ref|YP_003738840.1| 149 YFKRLYRRN-QFIERLYDIMAAdeLDAFFFPHQKQLVAE 186
                                       665555555.68888888888778***999976665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1531.95
//
Query:       gi|300713029|ref|YP_003738841.1|  [L=72]
Description: hypothetical protein HacjB3_18538 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 556.88
//
Query:       gi|300713030|ref|YP_003738842.1|  [L=251]
Description: hypothetical protein HacjB3_18543 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.034   14.0   0.2      0.034   14.0   0.2    2.2  2  zf-C2HC_2   zinc-finger of a C2HC-type
      0.039   14.3   0.2      0.059   13.7   0.2    1.2  1  SPATIAL     SPATIAL
      0.058   13.2   0.1      0.058   13.2   0.1    2.6  4  zf_C2HC_14  C2HC Zing finger domain
       0.41   10.6   6.3       0.69    9.9   0.1    3.3  3  DUF1610     Domain of unknown function (DUF1610)


Domain annotation for each model (and alignments):
>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.5       2.2   9.7e+03       4       8 ..     172     176 ..     171     176 .. 0.78
   2 ?   14.0   0.2   7.6e-06     0.034       2      24 ..     186     208 ..     185     209 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.2
                         zf-C2HC_2   4 pCpkC 8  
                                       +C +C
  gi|300713030|ref|YP_003738842.1| 172 QCGNC 176
                                       89888 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7.6e-06
                         zf-C2HC_2   2 lvpCpkCgRsFnpdrlekHepvC 24 
                                       ++pCp+C+ + + ++++ H++ C
  gi|300713030|ref|YP_003738842.1| 186 TQPCPHCNVQVGMSAWPQHVRAC 208
                                       79********************* PP

>> SPATIAL  SPATIAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   1.3e-05     0.059      10     117 ..     135     241 ..     129     250 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                           SPATIAL  10 rrVthikglngkpictVnddesllslllksqlssallgvpslsvpi.gdseskkeprlklssvseawreelkelask 85 
                                       + V hi + +g+p c    d + ++++l    +s++ ++ +++++  g++ ++  p  ++   + aw + ++  +  
  gi|300713030|ref|YP_003738842.1| 135 SAVYHIDDGEGQPLCNCTSDAQYTPVPLAEAEASTARQCGNCQIAReGEQATQPCPHCNVQVGMSAWPQHVRACTGD 211
                                       5699**************999999987777777777777777766325555555555555555***********999 PP

                           SPATIAL  86 valvsketekkkeekkeepevkrktqySaetG 117
                                        + + +et++  +     ++++r t++ ++tG
  gi|300713030|ref|YP_003738842.1| 212 PTDAAEETDPDGDPVI--TQTQRATSPATRTG 241
                                       9999999988874222..23456666666666 PP

>> zf_C2HC_14  C2HC Zing finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.3      0.92   4.1e+03       6      11 ..      24      29 ..      21      31 .. 0.81
   2 ?   -2.1   0.6       0.8   3.6e+03       7      10 ..      58      61 ..      57      63 .. 0.86
   3 ?   -3.9   0.6       2.8   1.3e+04       3      10 ..     169     176 ..     168     177 .. 0.62
   4 ?   13.2   0.1   1.3e-05     0.058       3      27 ..     185     209 ..     183     209 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.92
                        zf_C2HC_14  6 nCkgCe 11
                                       C+ C+
  gi|300713030|ref|YP_003738842.1| 24 ECTACN 29
                                      699997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.8
                        zf_C2HC_14  7 CkgC 10
                                      C++C
  gi|300713030|ref|YP_003738842.1| 58 CREC 61
                                      9*** PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2.8
                        zf_C2HC_14   3 tegnCkgC 10 
                                       t ++C  C
  gi|300713030|ref|YP_003738842.1| 169 TARQCGNC 176
                                       55677777 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 1.3e-05
                        zf_C2HC_14   3 tegnCkgCekqVcLSkMRaHiatCe 27 
                                       + ++C  C+ qV +S   +H+++C+
  gi|300713030|ref|YP_003738842.1| 185 ATQPCPHCNVQVGMSAWPQHVRACT 209
                                       6799********************6 PP

>> DUF1610  Domain of unknown function (DUF1610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00015      0.69       1      14 [.      25      38 ..      25      42 .. 0.86
   2 ?    1.3   0.1     0.079   3.5e+02       6      22 ..     160     176 ..     158     176 .. 0.87
   3 ?    0.7   0.2      0.12   5.3e+02      18      22 ..     188     192 ..     180     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00015
                           DUF1610  1 CtSCGaelaprEra 14
                                      Ct+C+++l ++E  
  gi|300713030|ref|YP_003738842.1| 25 CTACNRVLREGEQV 38
                                      *********99965 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.079
                           DUF1610   6 aelaprEravvFpCPNC 22 
                                       ++la++E +++  C NC
  gi|300713030|ref|YP_003738842.1| 160 VPLAEAEASTARQCGNC 176
                                       5899***9999999999 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.12
                           DUF1610  18 pCPNC 22 
                                       pCP C
  gi|300713030|ref|YP_003738842.1| 188 PCPHC 192
                                       9**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1927.23
//
Query:       gi|300713031|ref|YP_003738843.1|  [L=235]
Description: hypothetical protein HacjB3_18548 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-05   22.2   4.2    0.00015   21.4   4.2    1.4  1  Filament         Intermediate filament protein
    0.00011   22.1   4.1       0.18   11.8   3.0    2.7  2  Prefoldin_2      Prefoldin subunit
    0.00059   19.2   1.1    0.00059   19.2   1.1    1.8  2  MPS2             Monopolar spindle protein 2
     0.0027   17.5   2.0          5    7.1   0.0    3.3  3  HSBP1            Heat shock factor binding protein 1
     0.0033   16.5   2.6     0.0056   15.7   2.6    1.4  1  IFT57            Intra-flagellar transport protein 57
     0.0034   17.6  13.7       0.23   11.7   6.0    3.0  3  ABC_tran_CTD     ABC transporter C-terminal domain
     0.0037   17.3   2.2     0.0058   16.7   0.4    2.0  2  DUF1664          Protein of unknown function (DUF1664)
     0.0038   16.2   3.1     0.0054   15.6   3.1    1.2  1  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain
      0.004   17.6   0.7        0.6   10.6   0.1    2.7  2  NPV_P10          Nucleopolyhedrovirus P10 protein
     0.0041   16.9   7.2      0.024   14.5   3.1    2.6  2  PKcGMP_CC        Coiled-coil N-terminus of cGMP-dependent pro
     0.0044   15.2   5.6     0.0051   15.0   5.6    1.2  1  HOOK             HOOK protein
     0.0048   15.6  11.0       0.08   11.6   1.5    2.0  2  AAA_13           AAA domain
     0.0053   17.1   6.1       0.52   10.7   2.4    2.8  2  CLZ              C-terminal leucine zipper domain of cyclic n
     0.0058   16.4   6.7       0.11   12.2   2.6    2.3  2  SHE3             SWI5-dependent HO expression protein 3
     0.0075   16.2   7.4      0.052   13.4   7.3    2.1  1  SKA1             Spindle and kinetochore-associated protein 1
     0.0084   16.2   4.5     0.0084   16.2   4.5    2.2  1  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
       0.01   15.2   3.2      0.017   14.5   3.0    1.5  1  GAS              Growth-arrest specific micro-tubule binding
      0.012   15.9   4.6      0.083   13.2   0.1    2.4  2  DUF5082          Domain of unknown function (DUF5082)
      0.013   15.6   6.5       0.02   15.0   6.5    1.4  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
      0.013   15.2   6.9      0.018   14.7   2.9    2.3  2  Lebercilin       Ciliary protein causing Leber congenital ama
       0.02   14.3   1.2       0.02   14.3   1.2    1.6  2  FAM76            FAM76 protein
      0.021   15.2   6.7       0.47   10.9   0.8    3.2  3  FlaC_arch        Flagella accessory protein C (FlaC)
      0.023   14.1   5.8      0.049   13.0   5.8    1.6  1  YPEB             YpeB sporulation
      0.023   13.6   9.0      0.039   12.8   8.0    1.7  1  Spc7             Spc7 kinetochore protein
      0.025   15.0   3.6      0.025   15.0   3.6    1.9  1  KELK             KELK-motif containing domain of MRCK Ser/Thr
      0.026   13.9   6.5      0.032   13.6   5.3    1.8  2  DUF4763          Domain of unknown function (DUF4763)
      0.036   14.4  11.2       0.59   10.5   2.0    3.0  2  HalX             HalX domain
      0.037   14.7   4.7        8.2    7.2   0.5    3.2  3  Occludin_ELL     Occludin homology domain
      0.039   14.4   3.8      0.079   13.4   2.0    2.4  2  Snapin_Pallidin  Snapin/Pallidin
      0.042   13.8   6.1       0.29   11.1   1.9    2.6  2  Prefoldin        Prefoldin subunit
      0.046   14.0   7.4       0.19   12.0   5.0    2.7  2  BLOC1_2          Biogenesis of lysosome-related organelles co
      0.053   13.6   2.3       0.64   10.1   1.1    2.4  2  Med9             RNA polymerase II transcription mediator com
      0.058   13.6   6.2        0.4   10.8   0.8    2.7  2  End3             Actin cytoskeleton-regulatory complex protei
      0.065   14.0   3.0       0.16   12.7   0.1    2.7  2  DUF3349          Protein of unknown function (DUF3349)
      0.065   11.8   4.2      0.044   12.4   1.8    1.7  2  FapA             Flagellar Assembly Protein A
      0.072   13.6   6.6       0.04   14.4   3.5    2.1  1  Spectrin         Spectrin repeat
      0.088   12.9   4.5        2.8    8.0   0.9    2.9  2  COG2             COG (conserved oligomeric Golgi) complex com
      0.097   12.4   2.0       0.29   10.8   0.4    2.2  2  RPW8             Arabidopsis broad-spectrum mildew resistance
       0.11   12.6   3.7       0.12   12.4   1.9    1.9  2  Laminin_II       Laminin Domain II
       0.11   12.7   1.9         13    6.0   0.2    2.7  2  DUF2802          Protein of unknown function (DUF2802)
       0.12   12.5   3.9       0.31   11.1   3.9    1.8  1  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
       0.12   11.8   3.7        1.9    7.9   0.4    2.1  2  Allexi_40kDa     Allexivirus 40kDa protein
       0.13   13.2   2.3        1.2   10.0   0.4    2.8  2  CSN5_C           Cop9 signalosome subunit 5 C-terminal domain
       0.13   11.9   5.0       0.46   10.2   1.9    2.4  1  DUF4201          Domain of unknown function (DUF4201)
       0.14   10.3   8.8      0.042   12.1   5.0    1.9  2  FPP              Filament-like plant protein, long coiled-coi
       0.15   11.5   9.1       0.25   10.8   8.6    1.6  2  Golgin_A5        Golgin subfamily A member 5
       0.18   11.9   7.6       0.13   12.4   5.1    2.0  2  ADIP             Afadin- and alpha -actinin-Binding
       0.18   11.9   0.6        6.7    6.9   0.2    2.3  2  YojJ             Bacterial membrane-spanning protein N-termin
       0.18   11.0   1.8        0.2   10.9   0.9    1.5  1  TMPIT            TMPIT-like protein
       0.19   11.8   3.1       0.72    9.9   2.4    2.0  2  Spore_III_AB     Stage III sporulation protein AB (spore_III_
       0.19   11.3   4.3       0.61    9.7   1.2    2.4  2  DUF4795          Domain of unknown function (DUF4795)
       0.19   12.1   9.7       0.34   11.3   9.7    1.6  1  Fez1             Fez1
       0.21   11.4   7.7       0.41   10.4   2.8    2.5  2  DivIC            Septum formation initiator
       0.22   11.6   3.2        0.6   10.2   0.0    2.9  2  NapD             NapD protein
       0.22   11.6   4.3        7.1    6.8   1.0    2.7  2  Swi5             Swi5
       0.24   11.9  11.2       0.34   11.4   4.3    2.6  2  DUF4140          N-terminal domain of unknown function (DUF41
       0.25   10.8  11.5      0.044   13.3   7.7    1.6  1  HMMR_N           Hyaluronan mediated motility receptor N-term
       0.25   11.7   4.5       0.15   12.4   2.0    1.9  1  DUF641           Plant protein of unknown function (DUF641)
       0.26   10.8  13.5       0.76    9.3   2.2    3.0  3  PspA_IM30        PspA/IM30 family
       0.27   11.4   3.0        4.4    7.5   1.9    2.5  2  DUF2730          Protein of unknown function (DUF2730)
       0.27   11.6   5.4       0.56   10.6   2.5    2.4  2  CC2-LZ           Leucine zipper of domain CC2 of NEMO, NF-kap
       0.29   11.0   4.1       0.22   11.4   0.3    2.4  2  ACCA             Acetyl co-enzyme A carboxylase carboxyltrans
        0.3   10.9   3.6       0.26   11.1   1.9    1.8  1  DUF724           Protein of unknown function (DUF724)
        0.3   11.0   1.9        0.4   10.6   0.1    2.0  1  pRN1_helical     Primase helical domain
       0.32   11.3   8.5      0.077   13.3   3.5    2.3  3  Muted            Organelle biogenesis, Muted-like protein
       0.33   11.6  11.1       0.63   10.7   6.8    3.2  2  SlyX             SlyX
       0.33   11.0  12.9        3.2    7.8   9.4    2.9  3  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
       0.34   10.3   8.3       0.38   10.1   1.2    2.5  3  Not3             Not1 N-terminal domain, CCR4-Not complex com
       0.37    9.9   7.7       0.12   11.6   4.8    1.6  2  Tmemb_cc2        Predicted transmembrane and coiled-coil 2 pr
        0.4   10.9  11.0       0.26   11.5   9.0    1.8  1  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
       0.43   10.8   5.1        1.3    9.2   1.8    2.6  2  Cnn_1N           Centrosomin N-terminal motif 1
       0.46    9.8   8.6       0.25   10.6   1.2    2.3  2  CASP_C           CASP C terminal
       0.48   10.6   6.5        6.4    7.0   3.9    2.5  3  JIP_LZII         JNK-interacting protein  leucine zipper II
       0.48   10.5   7.1       0.56   10.2   4.0    2.5  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
        0.5   10.5   7.2        4.4    7.4   0.8    2.9  2  Nup54            Nucleoporin complex subunit 54
       0.52   10.8   4.1        1.5    9.3   2.0    2.4  2  Cep57_MT_bd      Centrosome microtubule-binding domain of Cep
       0.54    8.1   3.8       0.63    7.9   3.8    1.2  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.58   10.2   8.2        7.4    6.6   6.2    2.6  1  FlxA             FlxA-like protein
       0.63   10.0   9.2       0.29   11.1   1.6    3.2  2  Pox_A_type_inc   Viral A-type inclusion protein repeat
        0.8    8.9   5.0       0.75    9.0   4.3    1.5  1  ISG65-75         Invariant surface glycoprotein
       0.82    9.1  10.4        2.7    7.4  10.5    1.9  1  DUF3552          Domain of unknown function (DUF3552)
        0.9    9.7   4.7          1    9.5   1.9    2.3  2  Fib_alpha        Fibrinogen alpha/beta chain family
        0.9    9.9   9.1        5.6    7.3   8.5    2.2  1  OmpH             Outer membrane protein (OmpH-like)
          1    8.6  11.2        1.8    7.8  11.2    1.5  1  DUF4407          Domain of unknown function (DUF4407)
        1.3    9.1  10.0         10    6.3   0.1    3.1  3  IFP_35_N         Interferon-induced 35 kDa protein (IFP 35) N
        1.4    9.2   9.1        0.8   10.0   4.6    2.5  1  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
        1.4    9.4   6.7        3.1    8.3   0.6    2.7  2  DUF16            Protein of unknown function DUF16
        1.5    9.6   6.6       0.61   10.8   2.7    2.2  2  DUF2203          Uncharacterized conserved protein (DUF2203)
        1.6    8.7   9.5        2.7    8.0   4.5    2.5  2  Cep57_CLD        Centrosome localisation domain of Cep57
        1.7    9.5   5.9         31    5.4   0.9    2.9  2  Ima1_N           Ima1 N-terminal domain
        1.9    8.0  17.3        3.9    7.0  14.3    2.4  2  MscS_porin       Mechanosensitive ion channel porin domain
          2    7.2  15.3       0.23   10.3   4.3    2.6  2  DUF812           Protein of unknown function (DUF812)
          2    8.3   7.4       0.86    9.5   0.3    2.8  2  Matrilin_ccoil   Trimeric coiled-coil oligomerisation domain 
          2    8.6   8.7       0.23   11.7   2.5    2.4  2  Uds1             Up-regulated During Septation
          2    8.0   9.8        9.1    5.9   9.8    2.3  1  GrpE             GrpE
        2.2    8.6  13.5       0.54   10.5   3.2    2.7  2  Spc24            Spc24 subunit of Ndc80
        2.6    8.4  10.3        4.8    7.5   0.2    3.1  3  DUF948           Bacterial protein of unknown function (DUF94
        2.8    8.2  12.7        1.3    9.2   3.2    2.8  2  DUF5446          Family of unknown function (DUF5446)
        3.3    8.0  11.5       0.86    9.8   5.0    2.6  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
        3.8    7.6  19.1        2.6    8.2   7.0    2.4  2  Tropomyosin_1    Tropomyosin like
        4.6    7.7   8.1        2.3    8.6   5.9    1.7  2  AAA_23           AAA domain
        4.8    7.7   8.2        8.8    6.9   4.9    2.9  2  PhoU             PhoU domain
        5.9    7.5   9.4        9.4    6.9   2.4    2.8  2  BST2             Bone marrow stromal antigen 2
        6.2    7.4   7.6         46    4.7   0.1    3.2  2  MerR-DNA-bind    MerR, DNA binding
        6.7    7.4   7.5         24    5.6   1.4    2.5  2  YabA             Initiation control protein YabA
        7.5    6.8   9.6          2    8.7   2.2    2.9  2  XhlA             Haemolysin XhlA
        7.8    6.6   5.6        3.4    7.8   1.4    2.5  1  PspB             Phage shock protein B
          8    6.6  13.3        1.3    9.2   1.9    3.0  2  DivIVA           DivIVA protein
        8.6    6.5  18.1       0.93    9.7   5.8    2.6  2  ATG16            Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   4.2   9.3e-07   0.00015     198     281 ..      11      94 ..       2     100 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.3e-07
                                       XXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          Filament 198 eelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaei 274
                                       +   + a++++ +l+s  e+++ l  ++++le+el+      + lea+l+e +    +e ++++  ++++e++++e+
  gi|300713031|ref|YP_003738843.1|  11 TATDQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQEL 87 
                                       5566778999999**************************************************************** PP

                                       HHHHHHH CS
                          Filament 275 reemarq 281
                                         +++  
  gi|300713031|ref|YP_003738843.1|  88 ETTLQET 94 
                                       9999876 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   3.0    0.0011      0.18      64     101 ..      24      61 ..      17      66 .. 0.64
   2 ?    8.6   0.0     0.011       1.8       6      31 ..      69      94 ..      67     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0011
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
                       Prefoldin_2  64 keeLeerketlekeiktlekqleklekeleelkeelqk 101
                                       +e   e++e l+ ++++le +l ++  ++eel++el +
  gi|300713031|ref|YP_003738843.1|  24 LESISEQLEALTNRVEELEAELNRKDDRIEELEAELTE 61 
                                       55666666667777777777777777777777666644 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.011
                                      HHHHHHHHHHHHHHHHHHHHHHHHHH CS
                       Prefoldin_2  6 kfqqlqqqlqqlaqqikqletqlkel 31
                                      +f++ + ++++++ qi++let l+e 
  gi|300713031|ref|YP_003738843.1| 69 EFADVRGRITDVEDQIQELETTLQET 94
                                      68899999999999999999999985 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.1   3.6e-06   0.00059     133     192 ..       6      64 ..       2     116 .. 0.86
   2 ?   -0.6   0.1       3.8   6.3e+02      94     154 ..     142     202 ..     118     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.6e-06
                              MPS2 133 tprkkilldllkkqesPeklrrsnrklkaLevrveslkdELeakdevlrekeRelleLkk 192
                                       t+++    d+   +e+P+   ++ ++l aL  rve+l+ EL+ kd+ ++e e el+e k+
  gi|300713031|ref|YP_003738843.1|   6 TSTESTATDQPATTEEPTL-ESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKR 64 
                                       4445545556777888865.5999********************************9986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3.8
                              MPS2  94 ifedvDgieaekisslelkeevkrlvvlssknsekdslstprkkilldllkkqesPeklrr 154
                                       i++dv    ++  + l+l++++   v+  +++s++ +++ +r  ++l++l+k++  ++ rr
  gi|300713031|ref|YP_003738843.1| 142 IAQDVQDYAEKAPAGLVLDSQTIAKVITAAEGSKPHTQTVARVMNFLEKLGKDDVEQTKRR 202
                                       5667777777777778888887777888888888888888888888888888776666644 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.089        15      24      44 ..      26      46 ..      24      48 .. 0.88
   2 ?    2.8   0.0      0.64   1.1e+02      34      47 ..      50      63 ..      49      67 .. 0.83
   3 ?    7.1   0.0     0.031         5      26      49 ..      74      97 ..      71      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.089
                             HSBP1 24 qilsriDdMssriDdLEksia 44
                                      +i ++++ +++r+++LE+ ++
  gi|300713031|ref|YP_003738843.1| 26 SISEQLEALTNRVEELEAELN 46
                                      788999***********9875 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.64
                             HSBP1 34 sriDdLEksiadlm 47
                                       ri++LE+ ++++ 
  gi|300713031|ref|YP_003738843.1| 50 DRIEELEAELTEYK 63
                                      59******999875 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.031
                             HSBP1 26 lsriDdMssriDdLEksiadlmtq 49
                                       +ri d +  i +LE+++++  t+
  gi|300713031|ref|YP_003738843.1| 74 RGRITDVEDQIQELETTLQETPTE 97
                                      589999999999999999987665 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.6   3.4e-05    0.0056     234     313 ..      25     104 ..      14     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.4e-05
                             IFT57 234 ksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaei 310
                                       +si+e+l+ +++ +++l+ ++++  ++ie+ E  l++  +   +e+ +++ ++++v++++++l+++++e  +e +++
  gi|300713031|ref|YP_003738843.1|  25 ESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETPTETTTV 101
                                       57999999999999999999999999999999999999999999999999999999999999999999988887777 PP

                             IFT57 311 see 313
                                         e
  gi|300713031|ref|YP_003738843.1| 102 AAE 104
                                       654 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   6.0    0.0014      0.23      32      68 ..      20      56 ..       7      57 .. 0.86
   2 !   11.2   3.6    0.0021      0.34       9      59 ..      44      93 ..      43      94 .. 0.82
   3 !    9.0   0.3    0.0097       1.6       9      58 ..      69     118 ..      64     122 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0014
                      ABC_tran_CTD 32 adpelysdpeklaelsaeleeleaeLeelyerWeeLe 68
                                      ++p+l s +e+l +l+++ eeleaeL+++ +r eeLe
  gi|300713031|ref|YP_003738843.1| 20 EEPTLESISEQLEALTNRVEELEAELNRKDDRIEELE 56
                                      56777777899*************************9 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0021
                      ABC_tran_CTD  9 eleeleaeIeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLee 59
                                      el + +++Ie+LE+e++e    +a  e+ +d   +++++  +++ele+ L+e
  gi|300713031|ref|YP_003738843.1| 44 ELNRKDDRIEELEAELTEYKR-FAGSEF-ADVrGRITDVEDQIQELETTLQE 93
                                      67777899********99976.777776.56669999999999999999987 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0097
                      ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLe 58 
                                       e++ +  +I   E +i+ele+ l++    ++  +  e+  + ++ e+ Le
  gi|300713031|ref|YP_003738843.1|  69 EFADVRGRITDVEDQIQELETTLQETPTETTTVAAEETGSQTTTTETPLE 118
                                       77888899**************9987755555556666666666665555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   3.6e-05    0.0058      54     118 ..      24      92 ..      10     103 .. 0.68
   2 ?   -0.5   0.1       7.2   1.2e+03      66     114 ..     144     192 ..     125     201 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.6e-05
                           DUF1664  54 seslaatkrhLssridrvdkkldeqkeiskeikeevtevr....edlseigedvesvkeavegleskle 118
                                        es++++ + L++r+++++++l+   + ++e+++e+te +    ++ ++++  ++ v++ +++le++l+
  gi|300713031|ref|YP_003738843.1|  24 LESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKrfagSEFADVRGRITDVEDQIQELETTLQ 92 
                                       466777777777777777777777777777777777776522223566666666666666666666665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 7.2
                           DUF1664  66 sridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegle 114
                                       ++++   +k  +   + +++ ++v ++ e+ +   + v  v +  e+l+
  gi|300713031|ref|YP_003738843.1| 144 QDVQDYAEKAPAGLVLDSQTIAKVITAAEGSKPHTQTVARVMNFLEKLG 192
                                       5555555555555566666666666666666666666666666666654 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.1   3.3e-05    0.0054     172     283 ..      30     142 ..      20     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.3e-05
                        Fmp27_WPPW 172 qkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesseeees 248
                                       q e l +R+eele++++++++++eele +  + ++   +e+ +++  i +++++++ let+l+++ +++++ + ee+
  gi|300713031|ref|YP_003738843.1|  30 QLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETPTETTTVAAEET 106
                                       88999***************************999999999999999999999999999999999999886554444 PP

                        Fmp27_WPPW 249 kskelsaastsesfselde.lasseesaseFknRFi 283
                                        s+++++++  e++++l e +a+ e  +++ + RFi
  gi|300713031|ref|YP_003738843.1| 107 GSQTTTTETPLERICTLPEhVANRELTTNQKRARFI 142
                                       444444444444444443333333334444444555 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1    0.0036       0.6      35      59 ..      22      46 ..       8      65 .. 0.61
   2 ?    4.6   0.0      0.27        44       9      36 ..      73     100 ..      67     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0036
                           NPV_P10 35 pdvtelnekLdaqsaqLaeletkve 59
                                      p+++ ++e+L+a+++ ++ele++++
  gi|300713031|ref|YP_003738843.1| 22 PTLESISEQLEALTNRVEELEAELN 46
                                      5555555555555555555555443 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.27
                           NPV_P10   9 IradikavddkVdalqqqvddvqenlpd 36 
                                       +r  i++v+d+++ l++ +++  ++  +
  gi|300713031|ref|YP_003738843.1|  73 VRGRITDVEDQIQELETTLQETPTETTT 100
                                       4556677777777777777666655555 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   3.1   0.00015     0.024       9      31 ..      37      59 ..      35      62 .. 0.90
   2 ?    3.5   0.1      0.41        67      17      31 ..      77      91 ..      73      94 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 0.00015
                         PKcGMP_CC  9 RIRELEkrlaekdeEIqELrskL 31
                                      R+ ELE+ l++kd+ I+EL + L
  gi|300713031|ref|YP_003738843.1| 37 RVEELEAELNRKDDRIEELEAEL 59
                                      889****************8766 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.41
                         PKcGMP_CC 17 laekdeEIqELrskL 31
                                      + + ++ IqEL + L
  gi|300713031|ref|YP_003738843.1| 77 ITDVEDQIQELETTL 91
                                      455566666665443 PP

>> HOOK  HOOK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   5.6   3.1e-05    0.0051     476     594 ..      20     140 ..      12     202 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.1e-05
                              HOOK 476 eeekltelqelledanrrkneLetenrlanqrileLeaqveelqkalqeqgskaed.ssllkkkleehleklkevqe 551
                                       ee  l++++e+le   +r++eLe e   + +ri+eLea++ e ++   ++ +      + ++ +++e+   l+e   
  gi|300713031|ref|YP_003738843.1|  20 EEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGrITDVEDQIQELETTLQETPT 96 
                                       56678999*******************************87776655444333333234456666666666666666 PP

                              HOOK 552 elqkkkeqleelepklssnk...qkieeleeaLkkkdedlkameer 594
                                       e+++     ee+ ++++++    ++i +l e   +++   ++  +r
  gi|300713031|ref|YP_003738843.1|  97 ETTTV--AAEETGSQTTTTEtplERICTLPEHVANRELTTNQKRAR 140
                                       65443..333333322222113588888888888877665555555 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   2.3    0.0019      0.32     422     470 ..      14      62 ..       4      68 .. 0.68
   2 !   11.6   1.5   0.00048      0.08      88     224 ..      67     206 ..      65     215 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0019
                            AAA_13 422 ekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkaf 470
                                       ++ ++  e  l+ ++++l++l ++++eLe++l+ +   +ee++ eL+++
  gi|300713031|ref|YP_003738843.1|  14 DQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEY 62 
                                       4555555566677777777777777777777777777777777777776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00048
                            AAA_13  88 Geesiekqekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfke 164
                                       G+e ++ + +i+  +++i++le+ l+++  + +   +e++  +++ +++  + i +  +   +++l+ ++++++f +
  gi|300713031|ref|YP_003738843.1|  67 GSEFADVRGRITDVEDQIQELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPEHVANRELTTNQKRARFIA 143
                                       7778899999999********999877766666666665666666666666778888899999999999******** PP

                            AAA_13 165 rllkelkkknrkaaellsdeelkakletvesenlpelapls.....lssidldalekaeilkkkv 224
                                       ++++++++k  ++a l+ d++  ak+ t+ + ++p  +++      l++   d++e+++   kk+
  gi|300713031|ref|YP_003738843.1| 144 QDVQDYAEK--APAGLVLDSQTIAKVITAAEGSKPHTQTVArvmnfLEKLGKDDVEQTKRRGKKL 206
                                       *******98..788888888888887777666666665553110112222334445555555554 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   2.4    0.0031      0.52      24      67 ..      14      54 ..       6      64 .. 0.72
   2 ?    7.1   0.1     0.043         7      27      59 ..      78     110 ..      65     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0031
                               CLZ 24 aeqkel.eekverLessLeaLqtrlarLlaeyessqrkLkqRitk 67
                                      +++ ++ e  +e++ ++LeaL++r++ L ae++  +     Ri++
  gi|300713031|ref|YP_003738843.1| 14 DQPATTeEPTLESISEQLEALTNRVEELEAELNRKDD----RIEE 54
                                      4444440557899999999999999999999988765....4444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.043
                               CLZ  27 keleekverLessLeaLqtrlarLlaeyessqr 59 
                                        ++e+++++Le++L+   t    + ae + sq+
  gi|300713031|ref|YP_003738843.1|  78 TDVEDQIQELETTLQETPTETTTVAAEETGSQT 110
                                       689999999999999999999999998888876 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   2.6   0.00069      0.11      42      80 ..      26      64 ..      10      72 .. 0.89
   2 ?    5.9   0.1     0.057       9.4      67     107 ..      76     114 ..      73     122 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00069
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              SHE3 42 kflenlaslkhENdnLsslLkRKerrlkdlekelselke 80
                                      ++ e+l  l +  + L + L+RK+ r+ +le el+e+k+
  gi|300713031|ref|YP_003738843.1| 26 SISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKR 64
                                      56689999***************************9985 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.057
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH CS
                              SHE3  67 rlkdlekelselkesveelklekkqlkkrlenssasetele 107
                                       r+ d+e++++el++  +e  +e++++    e++ ++ t++e
  gi|300713031|ref|YP_003738843.1|  76 RITDVEDQIQELETTLQETPTETTTVAA--EETGSQTTTTE 114
                                       99***************99999988765..44444444444 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   7.3   0.00032     0.052      13     137 ..      12     133 ..       5     190 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00032
                                       ...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXX CS
                              SKA1  13 ainqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqek.lqhlkenlpshlpkktaas 88 
                                       a++q  ++ +++l+ i+++++al++ +++l++el+++ + i++l++e+ +  +   +    ++  + +    + + +
  gi|300713031|ref|YP_003738843.1|  12 ATDQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSeFADVRGRITDV---EDQIQ 85 
                                       45677788899*********************************9888777755555455555555443...44444 PP

                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-S--SS----HHHHT CS
                              SKA1  89 saeeskssspeeeeeteskkekeeeaekakkpkkreikevayiteeefe 137
                                       + e++ ++ p+ e++t +++e  +++ ++++p +r +   + + ++e++
  gi|300713031|ref|YP_003738843.1|  86 ELETTLQETPT-ETTTVAAEETGSQTTTTETPLERICTLPEHVANRELT 133
                                       44445555444.4446677777788888888888888777777777775 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   4.5   5.1e-05    0.0084      58     122 ..      23      87 ..      17      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.1e-05
                        TPR_MLP1_2  58 elqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklL 122
                                       +l+++ e+l+ l+++++el+ae+++    +ee e++++e k    +e ++++ ri+d+++q + L
  gi|300713031|ref|YP_003738843.1|  23 TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQEL 87 
                                       68999******************************************************996655 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.0    0.0001     0.017      43     123 ..      25     106 ..      18     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 0.0001
                               GAS  43 ernekelseisqenkrlkepLkkaeeeveeLrkqlknyek.dkqslknlkarlkelekelkdlkwehevleqrfekv 118
                                       e+ + +l++++++ ++l+ +L++ +  +eeL+++l +y++   ++++ ++ r++++e+++++l+   +    + ++v
  gi|300713031|ref|YP_003738843.1|  25 ESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRfAGSEFADVRGRITDVEDQIQELETTLQETPTETTTV 101
                                       566789999*****************************9944578*******************9988888877777 PP

                               GAS 119 ekerd 123
                                        +e  
  gi|300713031|ref|YP_003738843.1| 102 AAEET 106
                                       77655 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.4      0.39        64      93     122 ..      27      56 ..      10      63 .. 0.60
   2 ?   13.2   0.1   0.00051     0.083       8      57 ..      66     115 ..      59     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.39
                           DUF5082  93 ieeEIerLenqiseaqgvldtlqsqlnslk 122
                                       i+e  e L n ++e++  l++++  +++l+
  gi|300713031|ref|YP_003738843.1|  27 ISEQLEALTNRVEELEAELNRKDDRIEELE 56 
                                       444455555555555555555555444443 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00051
                           DUF5082   8 lqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkklekplnss 57 
                                       + ++ a+ r++i ++e++I++L+++ ++  +e  ++ ++++ ++++  ++
  gi|300713031|ref|YP_003738843.1|  66 AGSEFADVRGRITDVEDQIQELETTLQETPTETTTVAAEETGSQTTTTET 115
                                       66899******************999999999999999999998887666 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   6.5   0.00012      0.02      69     170 ..      10     118 ..       2     151 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 0.00012
                           UPF0242  69 kleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae.............. 131
                                        +++++   te++  l+ + e+le l+++ eeL+ el+ k+  +e+l+ e  + +       +              
  gi|300713031|ref|YP_003738843.1|  10 STATDQPATTEEP-TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYK-------Rfagsefadvrgrit 78 
                                       4455555555555.77777777777777777777777777777777777666555.......222332345556666 PP

                           UPF0242 132 dfeelkleleeqLaekqellqey.qetieeqrsvlekrqd 170
                                       d+e++ +ele +L+e  +   +  +e++ +q  + e   +
  gi|300713031|ref|YP_003738843.1|  79 DVEDQIQELETTLQETPTETTTVaAEETGSQTTTTETPLE 118
                                       7777777777777666544443313445555555555555 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   2.9   0.00011     0.018     120     182 ..      32      94 ..      24     100 .. 0.91
   2 ?    1.6   0.1       1.1   1.9e+02     134     177 ..     108     151 ..      97     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 0.00011
                        Lebercilin 120 eeLqkkLeeleakleekeekikeLerkleleeksfrrqlaaekkktkeaqeevkalqeeierl 182
                                       e L++++eelea+l++k+ +i+eLe +l   ++    + a  + ++ ++++++++l++++++ 
  gi|300713031|ref|YP_003738843.1|  32 EALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQET 94 
                                       789**************************************9999999999999999999875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 1.1
                        Lebercilin 134 eekeekikeLerkleleeksfrrqlaaekkktkeaqeevkalqe 177
                                        +++ +   Ler + l e   +r+l++ +k+++ + ++v++  e
  gi|300713031|ref|YP_003738843.1| 108 SQTTTTETPLERICTLPEHVANRELTTNQKRARFIAQDVQDYAE 151
                                       55555666799********************9999999988765 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.2   0.00012      0.02     219     287 ..      29      97 ..       2     110 .. 0.77
   2 ?   -1.8   0.0       9.7   1.6e+03     221     246 ..     120     145 ..      96     200 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 0.00012
                             FAM76 219 vavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkire 287
                                        +++ L +++++l+ +l++kd  + e + ++te k    ++ +++r +++++e +++e  ++l+++ +e
  gi|300713031|ref|YP_003738843.1|  29 EQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETPTE 97 
                                       3567899999999**********************9999999999*99999999999988888877555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 9.7
                             FAM76 221 vtqLkeeiaslkkqleqkdqellekd 246
                                       +  L e++a+++ + +qk   ++++d
  gi|300713031|ref|YP_003738843.1| 120 ICTLPEHVANRELTTNQKRARFIAQD 145
                                       55555555555555555555555444 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4      0.18        30      15      35 ..      23      43 ..      15      47 .. 0.68
   2 ?   10.9   0.8    0.0029      0.47       1      26 [.      37      62 ..      37      65 .. 0.93
   3 ?   10.4   0.9    0.0041      0.67       1      38 [.      51      92 ..      51     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.18
                         FlaC_arch 15 eletvkkeneelsksveelke 35
                                      +le++ +++e l + veel+ 
  gi|300713031|ref|YP_003738843.1| 23 TLESISEQLEALTNRVEELEA 43
                                      566777777777777777765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0029
                         FlaC_arch  1 ridelEnklsklsteletvkkeneel 26
                                      r++elE +l++ + ++e +++e+ e 
  gi|300713031|ref|YP_003738843.1| 37 RVEELEAELNRKDDRIEELEAELTEY 62
                                      8*********************9885 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0041
                         FlaC_arch  1 ridelEnklsklst....eletvkkeneelsksveelkenVk 38
                                      ri+elE +l + +     e++ v+  + +++++++el+ + +
  gi|300713031|ref|YP_003738843.1| 51 RIEELEAELTEYKRfagsEFADVRGRITDVEDQIQELETTLQ 92
                                      89********99888888*******************99986 PP

>> YPEB  YpeB sporulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   5.8    0.0003     0.049     106     250 ..      10     152 ..       4     209 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0003
                              YPEB 106 dldgepLteeeyktLeeLyeqakelekeLrkvqekvaegglrwgelekalas..eqekadntiidgnfktvekevek 180
                                       +++ ++    e  tLe+  eq ++l+++ +++++++++++ r++ele +l++    + ++ + + g+ ++ve ++++
  gi|300713031|ref|YP_003738843.1|  10 STATDQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEykRFAGSEFADVRGRITDVEDQIQE 86 
                                       34444445566789************************************987678888889999************ PP

                              YPEB 181 ypeliydGpfsdhlekktpkglsgkevseeeakkiakkflgkkkaekvevvesekkgkipaYsvevkdkk 250
                                       + ++  + p+ + +     +++++++ + e   +++ +  + +  +++e ++++k+++  a  v+ + +k
  gi|300713031|ref|YP_003738843.1|  87 LETTLQETPTETTT--VAAEETGSQTTTTETPLERICTLPE-H-VANRELTTNQKRARFIAQDVQDYAEK 152
                                       **999988884444..4444444455555544444444333.2.46666666666666555555555555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   8.0   0.00024     0.039     158     231 ..      27     100 ..      16     147 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00024
                              Spc7 158 LekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqlee 231
                                       +++q e l++ ++ele+e ++  +++e+l+++ +e +     e + +r ++++++ +i+e+++ l+e  ++ ++
  gi|300713031|ref|YP_003738843.1|  27 ISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETPTETTT 100
                                       22333333333333333333333333333333333333445555555555555555555544444444444333 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   3.6   0.00015     0.025       4      74 ..      26      93 ..      23      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 0.00015
                              KELK  4 eLekqlrllkqEkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevneklselrsqkqklsRqlrd 74
                                      ++ +ql++l++  eel+ el+   +r+ + + eL +    ++ a  ef++v  +++++  q q+l   l++
  gi|300713031|ref|YP_003738843.1| 26 SISEQLEALTNRVEELEAELNRKDDRIEELEAELTE---YKRFAGSEFADVRGRITDVEDQIQELETTLQE 93
                                      677899999999**********************87...578**********************9988876 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.3   0.00019     0.032      32     127 ..       6      95 ..       1     104 [. 0.74
   2 ?    0.2   0.4       2.3   3.8e+02      16      24 ..      90      97 ..      50     139 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00019
                           DUF4763  32 isseselpaeqeeeeeeldLdeiydelekiKqrvlelrskLalnvpecPeidecvdedlelelltseqpeileLqrn 108
                                        s+es++++ q+ + ee+ L++i ++le++ +rv+el+ +L  +      i+e + e +e +++     e  +++ +
  gi|300713031|ref|YP_003738843.1|   6 TSTESTATD-QPATTEEPTLESISEQLEALTNRVEELEAELNRK---DDRIEELEAELTEYKRFA--GSEFADVRGR 76 
                                       566666665.44999**************************966...224566666666666666..7778888888 PP

                           DUF4763 109 nhkLrqqlaelqqhlkasr 127
                                             q++el+  l+++ 
  gi|300713031|ref|YP_003738843.1|  77 ITDVEDQIQELETTLQETP 95 
                                       8888888888877777765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 2.3
                           DUF4763 16 klsqvsqse 24
                                      +l++  + e
  gi|300713031|ref|YP_003738843.1| 90 TLQET-PTE 97
                                      11111.222 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.6     0.048       7.9      33      57 ..      27      51 ..      17      54 .. 0.82
   2 ?   10.5   2.0    0.0036      0.59      21      60 ..      54      93 ..      50     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.048
                              HalX 33 dseeYqeLearleelraqldetlde 57
                                      +se+ ++L+ r+eel+a+l +  d+
  gi|300713031|ref|YP_003738843.1| 27 ISEQLEALTNRVEELEAELNRKDDR 51
                                      69999*************9987776 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0036
                              HalX 21 vLeaekseaeLadseeYqeLearleelraqldetldeldd 60
                                       Leae++e  + +  e+++ ++r+ ++++q+ e+ + l++
  gi|300713031|ref|YP_003738843.1| 54 ELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQE 93
                                      69****************************9998877665 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.5      0.05       8.2      26      68 ..      26      64 ..      19      69 .. 0.55
   2 ?    6.7   0.0     0.072        12      23      56 ..      69     102 ..      68     151 .. 0.82
   3 ?    0.8   0.0       5.1   8.4e+02      49      81 ..     171     202 ..     159     224 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.05
                      Occludin_ELL 26 elhaeleevskkfseLerelkelkegskeykkieeeilqeykk 68
                                      ++ ++le+++++++eLe+el++    +++++++e+e l eyk+
  gi|300713031|ref|YP_003738843.1| 26 SISEQLEALTNRVEELEAELNRK---DDRIEELEAE-LTEYKR 64
                                      44556666666666666666544...3344444444.444544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.072
                      Occludin_ELL  23 eYkelhaeleevskkfseLerelkelkegskeyk 56 
                                       e+ ++  ++++v+++++eLe+ l+e ++++++++
  gi|300713031|ref|YP_003738843.1|  69 EFADVRGRITDVEDQIQELETTLQETPTETTTVA 102
                                       67888999*****************999988443 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 5.1
                      Occludin_ELL  49 kegskeykkieeeilqeykklkkdpeyqekkkr 81 
                                       +egsk ++++++++++ ++kl kd    ++k+r
  gi|300713031|ref|YP_003738843.1| 171 AEGSKPHTQTVARVMNFLEKLGKDD-VEQTKRR 202
                                       5556655566666566666654443.3333333 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.0   0.00048     0.079      12      81 ..      21      93 ..      17     102 .. 0.71
   2 ?    2.3   0.1       1.4   2.3e+02      23      39 ..      78      94 ..      68     143 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00048
                   Snapin_Pallidin 12 epkldeldeklkelrqsQeeLleqldrlnekLkeleeaqe.aevl..pdlkeyakKLvnikkrmsslnerlqk 81
                                      ep+l+ + e+l++l++  eeL ++l+r  ++++ele +   ++ +  +++   + +++ ++ ++++l+++lq+
  gi|300713031|ref|YP_003738843.1| 21 EPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTeYKRFagSEFADVRGRITDVEDQIQELETTLQE 93
                                      6888888888888888888888888888888887776665444331156666677777777777777777775 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 1.4
                   Snapin_Pallidin 23 kelrqsQeeLleqldrl 39
                                       +++++ +eL  +l++ 
  gi|300713031|ref|YP_003738843.1| 78 TDVEDQIQELETTLQET 94
                                      33333333333333333 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.9    0.0018      0.29      79     115 ..      24      60 ..      18      64 .. 0.90
   2 ?    4.0   0.1      0.27        45      85     111 ..      76     102 ..      68     110 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0018
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                         Prefoldin  79 iellkkkleelekqlekleeeleklkdqittleanla 115
                                        e + ++le l++ +e+le+el+ + d+i++lea+l 
  gi|300713031|ref|YP_003738843.1|  24 LESISEQLEALTNRVEELEAELNRKDDRIEELEAELT 60 
                                       5788999**************************9986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.27
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                         Prefoldin  85 kleelekqlekleeeleklkdqittle 111
                                       +++++e+q+++le  l++  ++ tt+ 
  gi|300713031|ref|YP_003738843.1|  76 RITDVEDQIQELETTLQETPTETTTVA 102
                                       555666666666666666555555555 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.1    0.0069       1.1      58      95 ..      21      59 ..       1      60 [. 0.77
   2 ?   12.0   5.0    0.0012      0.19      14      82 ..      23      92 ..      21      95 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0069
                           BLOC1_2 58 e.elqpylqqidqiekqvteLeeavseLDeyskeLEakf 95
                                      e +l++  +q++++ ++v+eLe+  ++ D  + eLEa +
  gi|300713031|ref|YP_003738843.1| 21 EpTLESISEQLEALTNRVEELEAELNRKDDRIEELEAEL 59
                                      2479999999***************99999999999875 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0012
                           BLOC1_2 14 eleatvedyklLeklNeaasekykklkdvaaslekkleklnekye.elqpylqqidqiekqvteLeeavs 82
                                      +le+ +e+++ L++  e+ +++ +  +d++++le++l ++++    e++    +i ++e+q++eLe++ +
  gi|300713031|ref|YP_003738843.1| 23 TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGsEFADVRGRITDVEDQIQELETTLQ 92
                                      6889999***********************************9888********************9976 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.1    0.0039      0.64      43      78 ..      29      64 ..      23      66 .. 0.78
   2 ?    1.9   0.0       1.5   2.4e+02      32      50 ..      74      93 ..      68     101 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0039
                              Med9 43 relpgidrsveeqeaeieeleeqlakKrelLkkykn 78
                                      ++l+ +   vee eae++ ++++++  ++ L++yk+
  gi|300713031|ref|YP_003738843.1| 29 EQLEALTNRVEELEAELNRKDDRIEELEAELTEYKR 64
                                      677778888888888888888888888888888887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 1.5
                              Med9 32 rhkLkkarelirelpg.idr 50
                                      r ++  +  +i+el+  +++
  gi|300713031|ref|YP_003738843.1| 74 RGRITDVEDQIQELETtLQE 93
                                      44444444444444443333 PP

>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8    0.0025       0.4     161     198 ..      18      55 ..       5      56 .. 0.80
   2 ?    5.0   0.1      0.15        24     165     191 ..      68      94 ..      56     102 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0025
                              End3 161 kskeknlksvkedietveeqVegLesylssrkeeLeqL 198
                                       +++e  l+s++e +e++ + Ve+Le+ l+++ + +e+L
  gi|300713031|ref|YP_003738843.1|  18 TTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEEL 55 
                                       233367***************************99998 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.15
                              End3 165 knlksvkedietveeqVegLesylssr 191
                                       ++  +v+  i  ve+q+++Le+ l++ 
  gi|300713031|ref|YP_003738843.1|  68 SEFADVRGRITDVEDQIQELETTLQET 94 
                                       567889999*************99875 PP

>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.4       7.6   1.2e+03      36      50 ..      49      63 ..       9     103 .. 0.61
   2 ?   12.7   0.1     0.001      0.16      42      90 ..     142     192 ..     126     195 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 7.6
                                      HHHHHHHHHHHHHH- CS
                           DUF3349 36 deevkevaeelvaea 50
                                      d+ ++e+ +el++ +
  gi|300713031|ref|YP_003738843.1| 49 DDRIEELEAELTEYK 63
                                      444444444444444 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.001
                                       HHHHHHHH--...SSS.BSHHHCHHHHHHHCTS---HHHHHHHHHHHHTTT CS
                           DUF3349  42 vaeelvaeaa..eadeavdeedieelitkvteeepseedvarVaarLaagg 90 
                                       +a+++ + a+   a   +d++ i+++it+   ++p+ + varV + L++ g
  gi|300713031|ref|YP_003738843.1| 142 IAQDVQDYAEkaPAGLVLDSQTIAKVITAAEGSKPHTQTVARVMNFLEKLG 192
                                       5555554443225677899**************************999866 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.8   0.00027     0.044     329     424 ..      12     108 ..       2     127 .. 0.70
   2 ?   -0.6   0.0       2.3   3.9e+02      15      67 ..     131     183 ..     120     206 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00027
                              FapA 329 gldepelkekl..keleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelke 403
                                       + d+p++ e+   + + e+le+l +++e+l++++++ ++ ++ ++le+e  e    +  +    + +++++e++++e
  gi|300713031|ref|YP_003738843.1|  12 ATDQPATTEEPtlESISEQLEALTNRVEELEAELNRKDD-RI-EELEAELTEYKRFAGSEFADVRGRITDVEDQIQE 86 
                                       455555555544578888888888888888888777777.33.4566666666666777779999999999999999 PP

                              FapA 404 lkeeleskkeea.kikvnkeiy 424
                                       l+  l++   e+  ++++++  
  gi|300713031|ref|YP_003738843.1|  87 LETTLQETPTETtTVAAEETGS 108
                                       9999999966664666655544 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.3
                              FapA  15 tltaaeggkeltleeileaLkkagivfgidkealekilksakegeekevliAk 67 
                                       +lt +++  ++  ++++   +ka     +d + + k+++ a+ ++ ++ ++A+
  gi|300713031|ref|YP_003738843.1| 131 ELTTNQKRARFIAQDVQDYAEKAPAGLVLDSQTIAKVITAAEGSKPHTQTVAR 183
                                       55555666666666666666666666666666666666544444555555554 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.5   0.00024      0.04      33      98 ..      28      93 ..      11      97 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 0.00024
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
                          Spectrin 33 leevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaae 98
                                       e+++al ++ ++leael+ +++r+++l++  ++     +s+ ++++ r+ +++++ +eL+++++e
  gi|300713031|ref|YP_003738843.1| 28 SEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQE 93
                                      355666777999999999999999999997666664444677899999999999999999999887 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.9     0.017       2.8      71     108 ..      24      61 ..      19      66 .. 0.66
   2 ?    4.8   0.1      0.17        28      57      89 ..      70     102 ..      67     153 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.017
                              COG2  71 leevesplaaarkkvesvreklsereeeveskleeake 108
                                       le ++ +l+a++++ve+++++l+++  ++e+  +e +e
  gi|300713031|ref|YP_003738843.1|  24 LESISEQLEALTNRVEELEAELNRKDDRIEELEAELTE 61 
                                       66677777777777777777777777766666555554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.17
                              COG2  57 FvslSghLvglqeeleevesplaaarkkvesvr 89 
                                       F ++ g+ ++++++++e+e+ l+++ ++ + v 
  gi|300713031|ref|YP_003738843.1|  70 FADVRGRITDVEDQIQELETTLQETPTETTTVA 102
                                       555555666666666666666555544444333 PP

>> RPW8  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4    0.0017      0.29      37      74 ..      24      61 ..      11      66 .. 0.87
   2 ?    0.3   0.1       3.2   5.2e+02      25      43 ..      75      93 ..      69     115 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0017
                              RPW8 37 LestleritPvvkeieklnkeldrpreeieeLkklLek 74
                                      Les  e+++ + +++e+l++el+r+++ ieeL+ +L++
  gi|300713031|ref|YP_003738843.1| 24 LESISEQLEALTNRVEELEAELNRKDDRIEELEAELTE 61
                                      677778888999**********************9987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 3.2
                              RPW8 25 kksldfksilkrLestler 43
                                       + +d++ ++++Le tl++
  gi|300713031|ref|YP_003738843.1| 75 GRITDVEDQIQELETTLQE 93
                                      5666777777777777776 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.9   0.00075      0.12      11      81 ..      23      90 ..      15     103 .. 0.60
   2 ?    4.3   0.2      0.22        37       8      42 ..      73     105 ..      68     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00075
                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHH CS
                        Laminin_II 11 takevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkql 81
                                      t++++ eql++l +++e+++++l++ ++ +ee ++++    +  r A+++  ++   + +++d+++el++ 
  gi|300713031|ref|YP_003738843.1| 23 TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELT---EYKRFAGSEFADVRGRITDVEDQIQELETT 90
                                      55667777777777777777777777777555555544...333444444444444444444444444443 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.22
                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                        Laminin_II   8 anetakevleqlaplsqnlentkeklseinrsvee 42 
                                       +   ++ v++q+++l++ l++t  +  +++++  e
  gi|300713031|ref|YP_003738843.1|  73 VRGRITDVEDQIQELETTLQETPTETTTVAAE--E 105
                                       44556677777777777777777777777666..3 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2     0.079        13       4      28 ..      36      60 ..      23      67 .. 0.79
   2 ?    5.6   0.1       0.1        17       5      24 ..      76     102 ..      72     137 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.079
                           DUF2802  4 qrlaelekrlkqleerleeleqqdp 28
                                      +r++ele +l++ ++r+eele++ +
  gi|300713031|ref|YP_003738843.1| 36 NRVEELEAELNRKDDRIEELEAELT 60
                                      6889999999999999999987654 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.1
                           DUF2802   5 rlaelekrlkqleerleel.......e 24 
                                       r+ ++e ++++le+ l+e+       +
  gi|300713031|ref|YP_003738843.1|  76 RITDVEDQIQELETTLQETptetttvA 102
                                       666777777777777777643333333 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.9    0.0019      0.31      22      97 ..      24     101 ..      17     138 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0019
                      Baculo_PEP_C  22 LnairlqnvqilaqlatlldaietqLnalsedlksllaeldt.......rldtlltnLtdalnalqdtlrneLtnln 91 
                                       L++i   + q+  +l++ ++++e +Ln  ++++++l ael++       +++++  ++td   ++q +l++ L+ + 
  gi|300713031|ref|YP_003738843.1|  24 LESI---SEQL-EALTNRVEELEAELNRKDDRIEELEAELTEykrfagsEFADVRGRITDVEDQIQ-ELETTLQETP 95 
                                       4444...3333.566777777777777777777777777766676666644444444444444444.3444444444 PP

                      Baculo_PEP_C  92 siltnL 97 
                                       ++ t+ 
  gi|300713031|ref|YP_003738843.1|  96 TETTTV 101
                                       444443 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2      0.08        13     109     146 ..      14      50 ..       2      67 .. 0.68
   2 ?    7.9   0.4     0.012       1.9      76     139 ..      66     129 ..      49     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.08
                      Allexi_40kDa 109 etasdskllkklesietsleelhakldelsssetsese 146
                                       +++       +lesi ++le+l ++++el ++ +++ +
  gi|300713031|ref|YP_003738843.1|  14 DQPAT-TEEPTLESISEQLEALTNRVEELEAELNRKDD 50 
                                       23322.33457999999999999999999887776655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.012
                      Allexi_40kDa  76 qttlLselrdalrtltklldklksvekklelsaetasdskllkklesietsleelhakldelss 139
                                        +++++++r +++ +++++++l+++ +++ ++++t   +++  + ++ et le++ +  +++++
  gi|300713031|ref|YP_003738843.1|  66 AGSEFADVRGRITDVEDQIQELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPEHVAN 129
                                       4677899999999999999999999999999999999999999999999999988765555444 PP

>> CSN5_C  Cop9 signalosome subunit 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       2.3   3.8e+02      13      43 ..      28      58 ..      25      73 .. 0.83
   2 ?   10.0   0.4    0.0075       1.2      14      71 ..      75     128 ..      66     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 2.3
                            CSN5_C 13 tkqisDLaeKlekaessvsrsrsaagtlsee 43
                                      ++q++ L++++e+ e++++r+  ++++l++e
  gi|300713031|ref|YP_003738843.1| 28 SEQLEALTNRVEELEAELNRKDDRIEELEAE 58
                                      689999************9999988777655 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0075
                            CSN5_C  14 kqisDLaeKlekaessvsrsrsaagtlseeaseaeekkkkkkedsqLakvvkdstkia 71 
                                       ++i+D+++ +++ e++++++  ++ t ++e+++++     ++++++L++++   + +a
  gi|300713031|ref|YP_003738843.1|  75 GRITDVEDQIQELETTLQETPTETTTVAAEETGSQ----TTTTETPLERICTLPEHVA 128
                                       689****************9999988887665554....4455555555544333333 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.9    0.0028      0.46      78     118 ..      23      63 ..      17      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0028
                           DUF4201  78 althlkeklhmleselselkkelkekeerlaklrkelykvk 118
                                       +l+ + e l +l++ ++el+ el++k++r+++l++el++ k
  gi|300713031|ref|YP_003738843.1|  23 TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYK 63 
                                       678889999***************************99876 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.0   0.00025     0.042     750     815 ..      21      90 ..       7     148 .. 0.77
   2 ?   -0.5   0.1       1.5   2.5e+02     216     266 ..     181     226 ..     176     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00025
                               FPP 750 etqlkcmkesyesletrateleaelnelkqkieaLeveLeeekks....heeleakckelqeqlervekk 815
                                       e  l++ +e  e l  r +eleaeln+   +ie+Le+eL+e k+       +   ++++++ q++  e++
  gi|300713031|ref|YP_003738843.1|  21 EPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFagseFADVRGRITDVEDQIQELETT 90 
                                       5557777888889999999999999999999999999999998762211455666778888888877643 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.5
                               FPP 216 LAkMklEVesLgrdsgesrlrrspaksssallskveefsedsleklqkene 266
                                       +A+  + +e+Lg+d +e+ +rr      ++l++ +ee ++  ++ + +++e
  gi|300713031|ref|YP_003738843.1| 181 VARVMNFLEKLGKDDVEQTKRR-----GKKLVVIDEEAADRYHDRCDRDIE 226
                                       566677789********99999.....445555677888888888877765 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   8.6    0.0015      0.25      44     121 ..      26     103 ..      13     152 .. 0.76
   2 ?   -1.8   0.0        10   1.6e+03       6      31 ..     143     168 ..     138     209 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0015
                         Golgin_A5  44 alsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlk 120
                                         s +l++l+++ + l++el++   +ie+l +el + ++ + +e+  +r +++++e+q++e + + +e+ +e   + 
  gi|300713031|ref|YP_003738843.1|  26 SISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETPTETTTVA 102
                                       46778999999999999999999999999999999999999999999999999999999987777777777765544 PP

                         Golgin_A5 121 e 121
                                        
  gi|300713031|ref|YP_003738843.1| 103 A 103
                                       3 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 10
                         Golgin_A5   6 kqeledYKqkAarILQsKekliasLk 31 
                                        q+++dY +kA   L    + ia++ 
  gi|300713031|ref|YP_003738843.1| 143 AQDVQDYAEKAPAGLVLDSQTIAKVI 168
                                       57778888887655544444444333 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   5.1   0.00077      0.13      53     118 ..      29      94 ..      24     110 .. 0.79
   2 ?    2.9   0.5      0.62     1e+02      72     129 ..      80     139 ..      70     148 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00077
                              ADIP  53 eqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeel 118
                                       eq e+l+ ++++leae+ r+  +ie l+++l++++r + +  a+ r   +++++++q l ++ +e 
  gi|300713031|ref|YP_003738843.1|  29 EQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQET 94 
                                       899********************************9777766666666666666666665555554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.62
                              ADIP  72 lqskierlktqleqlerelalvqaker..qlekklktleqklknekeelqrlknalqqik 129
                                        + +i+ l+t l+++ +e+++v a+e+  q++++ + le+        ++r  +++q+++
  gi|300713031|ref|YP_003738843.1|  80 VEDQIQELETTLQETPTETTTVAAEETgsQTTTTETPLERICTLPEHVANRELTTNQKRA 139
                                       567899999999999999986655554114444455566666666666666666666655 PP

>> YojJ  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2     0.041       6.7       7      39 ..      20      52 ..      15      56 .. 0.89
   2 ?    2.9   0.0      0.72   1.2e+02       8      37 ..      60      89 ..      54      94 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.041
                              YojJ  7 eeelkeklkeeLeqiekeleevlkaldeedeCl 39
                                      ee+  e + e+Le  ++++ee  ++l+ +d+++
  gi|300713031|ref|YP_003738843.1| 20 EEPTLESISEQLEALTNRVEELEAELNRKDDRI 52
                                      56667899**********************987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.72
                              YojJ  8 eelkeklkeeLeqiekeleevlkaldeede 37
                                      +e+k+    e+ ++++++ +v ++++e + 
  gi|300713031|ref|YP_003738843.1| 60 TEYKRFAGSEFADVRGRITDVEDQIQELET 89
                                      566666777888888888888888877664 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.9    0.0012       0.2      17      84 ..      23      93 ..       7     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0012
                             TMPIT 17 takeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk...eeeeeeveelkeelkerkkvlke 84
                                      t +++ ++le l++  +++  e++++  r++el+++l+++k+ ++   ++ + ++++++++++e +++l+e
  gi|300713031|ref|YP_003738843.1| 23 TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGsefADVRGRITDVEDQIQELETTLQE 93
                                      557889999******************************99986655533333444444444444444443 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.4    0.0044      0.72      28     143 ..      29     153 ..      23     157 .. 0.71
   2 ?    0.3   0.0       4.1   6.8e+02     100     135 ..     189     224 ..     163     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0044
                                       HHHHHHHHHHHHHHHHHHH-SS-HHHHHHHHHHCS-TTHHHH......HHHHHHHHH.S...TSS-HHHHHHHHHHH CS
                      Spore_III_AB  28 keleelkralellegeirygatpLpealeklaeksesplsef......feevaerleek...egesfeeaweeavek 95 
                                       ++le+l + +e le+e++     ++e+ ++l e  +   sef      + +v ++++e     +e+ +e    a+e+
  gi|300713031|ref|YP_003738843.1|  29 EQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFadvrgrITDVEDQIQELettLQETPTETTTVAAEE 105
                                       45555566666666666666666655555555333332222222244455555555542244899999999999*** PP

                                       HGGGS---HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHH CS
                      Spore_III_AB  96 llkklaLkkedkeilkelgeslgysdregqlkalelaleeleeeieea 143
                                       + +++  ++  +e +++l e+  + ++++++k  + + +++++  e+a
  gi|300713031|ref|YP_003738843.1| 106 TGSQTTTTETPLERICTLPEHVANRELTTNQKRARFIAQDVQDYAEKA 153
                                       *****************************************9999987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 4.1
                                       S---HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHH CS
                      Spore_III_AB 100 laLkkedkeilkelgeslgysdregqlkalelalee 135
                                        +L k+d e  k+ g++l   d e   +  +++ ++
  gi|300713031|ref|YP_003738843.1| 189 EKLGKDDVEQTKRRGKKLVVIDEEAADRYHDRCDRD 224
                                       457778888888888888888877766666666555 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.2    0.0037      0.61      15      53 ..      23      61 ..      19      66 .. 0.89
   2 ?    1.9   0.1      0.86   1.4e+02     137     156 ..      79      98 ..      62     131 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0037
                           DUF4795 15 aieklqeelekleekvkelekrledkekklealkkqiee 53
                                      ++e ++e+le l ++v+ele +l++k++ +e l+ ++ e
  gi|300713031|ref|YP_003738843.1| 23 TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTE 61
                                      578899**************************9988765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.86
                           DUF4795 137 qleerlkelqkelqeameke 156
                                        +e++++el++ lqe +  +
  gi|300713031|ref|YP_003738843.1|  79 DVEDQIQELETTLQETPTET 98 
                                       23455555555555544433 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   9.7    0.0021      0.34      41     126 ..      25     114 ..       9     214 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0021
                              Fez1  41 relrakleekeeeikeleesleektlelevcenelqrk....kseaellrekvekleeelkelreelselsleeeea 113
                                         ++++le+  ++++ele++l+ k++ +e++e+el +      se   +r +++ +e++++el ++l+e+ +e+++ 
  gi|300713031|ref|YP_003738843.1|  25 ESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYkrfaGSEFADVRGRITDVEDQIQELETTLQETPTETTTV 101
                                       567899*****************************998566656777889999999999999999999966555554 PP

                              Fez1 114 alesdeakaqrqe 126
                                       a+e + +++  +e
  gi|300713031|ref|YP_003738843.1| 102 AAEETGSQTTTTE 114
                                       4333322222222 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.8    0.0025      0.41      18      51 ..      30      63 ..      23      71 .. 0.86
   2 ?    3.0   0.2      0.53        87      18      45 ..      76     103 ..      70     107 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0025
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
                             DivIC 18 aykqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                                      ++ +l + +++l+ael+++ +++eeLeae+ ++k
  gi|300713031|ref|YP_003738843.1| 30 QLEALTNRVEELEAELNRKDDRIEELEAELTEYK 63
                                      5667888899*******************99885 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.53
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                             DivIC  18 aykqlkqeiaalqaelaklkaeneeLea 45 
                                       ++ +++ +i++l+ +l++   e    +a
  gi|300713031|ref|YP_003738843.1|  76 RITDVEDQIQELETTLQETPTETTTVAA 103
                                       5778999999999999998777766655 PP

>> NapD  NapD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1       3.5   5.8e+02      13      50 ..      75     111 ..      73     136 .. 0.64
   2 ?   10.2   0.0    0.0037       0.6      13      56 ..     179     222 ..     175     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 3.5
                              NapD  13 erlaavkaalaalpgvEvhasdeegklVvviEaesede 50 
                                       +r+++v +++++l+ + +  ++ e   V   E+ s+ +
  gi|300713031|ref|YP_003738843.1|  75 GRITDVEDQIQELETT-LQETPTETTTVAAEETGSQTT 111
                                       5788888888888765.333333355555555555554 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0037
                              NapD  13 erlaavkaalaalpgvEvhasdeegklVvviEaesedeladtie 56 
                                       +++a+v + l++l + +v +++ +gk  vvi+ e +d+ +d+ +
  gi|300713031|ref|YP_003738843.1| 179 QTVARVMNFLEKLGKDDVEQTKRRGKKLVVIDEEAADRYHDRCD 222
                                       67899*****************************9999999876 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.0     0.043       7.1       6      38 ..      25      57 ..      20      66 .. 0.63
   2 ?    5.3   0.1      0.13        21       6      28 ..      78     100 ..      73     126 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.043
                                      HHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS
                              Swi5  6 keleeqleelekelaelkeelkekkdpeetvkr 38
                                      +++ eqle+l + ++el++el+ k+d  e+++ 
  gi|300713031|ref|YP_003738843.1| 25 ESISEQLEALTNRVEELEAELNRKDDRIEELEA 57
                                      566677777777777777777766655554443 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.13
                                       HHHHHHHHHHHHHHHHHHHHHHH CS
                              Swi5   6 keleeqleelekelaelkeelke 28 
                                        ++e+q++ele+ l+e+  e   
  gi|300713031|ref|YP_003738843.1|  78 TDVEDQIQELETTLQETPTETTT 100
                                       55556666666666655555442 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.3    0.0021      0.34      50      95 ..      15      59 ..       3      62 .. 0.71
   2 ?    4.4   0.3      0.31        51      66      92 ..      76     102 ..      60     108 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0021
                           DUF4140 50 ldvqvervpnreaeeeelkalraeleeledelaaledelaaaearl 95
                                      +  ++e+ + +++ e +l+al++++eele+el++ +d+++ +ea+l
  gi|300713031|ref|YP_003738843.1| 15 QPATTEEPTLESISE-QLEALTNRVEELEAELNRKDDRIEELEAEL 59
                                      333333333333333.5***********************999987 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.31
                           DUF4140  66 elkalraeleeledelaaledelaaae 92 
                                       ++  ++++++ele++l++   e +++ 
  gi|300713031|ref|YP_003738843.1|  76 RITDVEDQIQELETTLQETPTETTTVA 102
                                       567778888888888887766666655 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   7.7   0.00027     0.044     231     313 ..      19     104 ..       3     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00027
                            HMMR_N 231 eyieelsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekcklle...kekeelvreee 304
                                        +   l+++seqle    ++++le  l+ k+d ie+L  +L e +     +  d   ++  +e   +e+e +++e  
  gi|300713031|ref|YP_003738843.1|  19 TEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEdqiQELETTLQETP 95 
                                       45567999*************************************99999999999999999955555555566655 PP

                            HMMR_N 305 ekeqtlsaE 313
                                       + + t+ aE
  gi|300713031|ref|YP_003738843.1|  96 TETTTVAAE 104
                                       555555555 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.0   0.00094      0.15      83     120 ..      27      64 ..       5      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00094
                            DUF641  83 qrsllktyeitvkkleaelkakdseieeLkekLeeaek 120
                                         + l+++  +v++leael++kd  ieeL+++L+e ++
  gi|300713031|ref|YP_003738843.1|  27 ISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKR 64 
                                       44567888899**********************99876 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.2    0.0046      0.76      96     139 ..      20      63 ..      15      69 .. 0.87
   2 ?    7.8   0.2     0.013       2.2     109     142 ..      72     105 ..      66     113 .. 0.84
   3 ?    0.6   0.5       2.1   3.5e+02      57     103 ..     136     184 ..     125     206 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0046
                         PspA_IM30  96 lekqaealetqlaqqrsaveqlrkqlealetkieelkakkellk 139
                                        e ++e  ++ql+ +   ve+l+++l++ + +ieel+a+ +++k
  gi|300713031|ref|YP_003738843.1|  20 EEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYK 63 
                                       566788999999999999*******************9999886 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.013
                         PspA_IM30 109 qqrsaveqlrkqlealetkieelkakkellkare 142
                                        +r  + +++ q+++let ++e+ ++ ++++a e
  gi|300713031|ref|YP_003738843.1|  72 DVRGRITDVEDQIQELETTLQETPTETTTVAAEE 105
                                       56667789999******************99987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 2.1
                         PspA_IM30  57 erkleeqkeqakklekkAkaALtkgeeeLAr..ealaeikslekqaeal 103
                                       +++++  +++++++ +kA a L   ++  A+   a++  k +++++++ 
  gi|300713031|ref|YP_003738843.1| 136 QKRARFIAQDVQDYAEKAPAGLVLDSQTIAKviTAAEGSKPHTQTVARV 184
                                       4566777888999999998888888888887334566666677776665 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.9     0.027       4.4      34      92 ..      30      90 ..      14      93 .. 0.71
   2 ?    7.1   0.1     0.035       5.7      34      63 ..      69      98 ..      60     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.027
                           DUF2730 34 dleklaekveendkrlteletkvenLPta.kdlekLk.llladlrgelkaleaevrqlshq 92
                                      +le l++ vee +  l++ + ++e+L  +  + ++    + ad+rg++ ++e ++++l++ 
  gi|300713031|ref|YP_003738843.1| 30 QLEALTNRVEELEAELNRKDDRIEELEAElTEYKRFAgSEFADVRGRITDVEDQIQELETT 90
                                      5666777777777777777777777754324455543367888999999999999888875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.035
                           DUF2730 34 dleklaekveendkrlteletkvenLPtak 63
                                      + + +   +++ + +++elet++++ Pt+ 
  gi|300713031|ref|YP_003738843.1| 69 EFADVRGRITDVEDQIQELETTLQETPTET 98
                                      666777788888888888888888888875 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.5    0.0034      0.56      12      49 ..      27      64 ..      17      85 .. 0.80
   2 ?    1.9   0.1       1.8   2.9e+02      13      43 ..      74     104 ..      61     123 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0034
                            CC2-LZ 12 kkeeieeLkaqlqaaeealaakqeeidelkeeikkkee 49
                                        e++e L++++++ e  l++k+++i+el++e+++ + 
  gi|300713031|ref|YP_003738843.1| 27 ISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKR 64
                                      3799****************************998765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 1.8
                            CC2-LZ  13 keeieeLkaqlqaaeealaakqeeidelkee 43 
                                       +  i++++ q+q+ e  l++   e   +++e
  gi|300713031|ref|YP_003738843.1|  74 RGRITDVEDQIQELETTLQETPTETTTVAAE 104
                                       5566667777777777766666666555554 PP

>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.8      0.77   1.3e+02      29      53 ..      27      51 ..       3      64 .. 0.49
   2 ?   11.4   0.3    0.0014      0.22       5      58 ..      49     100 ..      45     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.77
                              ACCA 29 lseeieklekkleklkkeiyknltp 53
                                      +se++e+l +++e+l++e+ ++ ++
  gi|300713031|ref|YP_003738843.1| 27 ISEQLEALTNRVEELEAELNRKDDR 51
                                      3333333333333333333322222 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0014
                              ACCA   5 ekpiaeleekieelkklaeesevdlseeieklekkleklkkeiyknltpwqkvq 58 
                                       +++i+ele++++e k++a ++ +d++ +i+++e+++++l+++++++ t+   ++
  gi|300713031|ref|YP_003738843.1|  49 DDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETPTET--TT 100
                                       578************************************99987654444..33 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.9    0.0016      0.26     110     184 ..      23      94 ..      10     105 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0016
                            DUF724 110 erkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFeav 184
                                       +++ + +++e  +++ ++le+e++ ++ +i ele +l+  k     a +e a+++    ++e+++++ e+  +++
  gi|300713031|ref|YP_003738843.1|  23 TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYK---RFAGSEFADVRGRITDVEDQIQELETTLQET 94 
                                       5677889999999999******************9999666...4455555555555555555555555544443 PP

>> pRN1_helical  Primase helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0025       0.4       3      54 ..      47      97 ..      45     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0025
                      pRN1_helical  3 kededleklkeemakydrykgktleaireelckeikkkleelkgkdekkakk 54
                                      ++d+ +e l  e++ y r+ g     +r  +  +++ +++el++  ++   +
  gi|300713031|ref|YP_003738843.1| 47 RKDDRIEELEAELTEYKRFAGSEFADVRGRIT-DVEDQIQELETTLQETPTE 97
                                      67999***********************9986.6788888887666665555 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.5   0.00047     0.077      49     137 ..       6      93 ..       1      99 [. 0.83
   2 ?    1.3   0.4       2.5   4.1e+02      41      96 ..      84     139 ..      79     153 .. 0.55
   3 ?   -0.5   0.1       8.5   1.4e+03      27      65 ..     185     223 ..     175     228 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00047
                             Muted  49 nelkeqllpkclesmkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekkeevD 125
                                       ++++ +  ++  ++ + +L++++++lea+++ ve+l+ + l+++  + e+l+++ +e+k+   +   +++ +  +v+
  gi|300713031|ref|YP_003738843.1|   6 TSTESTATDQPATTEEPTLESISEQLEALTNRVEELEAE-LNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVE 81 
                                       55566666666666789*******************999.9999999*****999888886654449********** PP

                             Muted 126 eefeekveelke 137
                                       ++++e + +l+e
  gi|300713031|ref|YP_003738843.1|  82 DQIQELETTLQE 93 
                                       ****99999987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 2.5
                             Muted  41 LenikklvnelkeqllpkclesmkenLselnkkleaalekverllqkeleeekrks 96 
                                       +++++ +++e+  ++     e+  ++ +++++ le      e++ ++el ++++++
  gi|300713031|ref|YP_003738843.1|  84 IQELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPEHVANRELTTNQKRA 139
                                       44455555555555555555555555555556666666666666666666555544 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 8.5
                             Muted  27 keFEekRgdrevelLenikklvnelkeqllpkclesmke 65 
                                        +F ek g+++ve+ +   k++  ++e+  ++ +++ + 
  gi|300713031|ref|YP_003738843.1| 185 MNFLEKLGKDDVEQTKRRGKKLVVIDEEAADRYHDRCDR 223
                                       467777777777777777777777777777776666555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.8    0.0038      0.63       2      59 ..      35      96 ..      34     106 .. 0.86
   2 ?    0.1   0.1       7.8   1.3e+03      30      56 ..     129     155 ..     126     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0038
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHT-XXXXXXXXXXXX CS
                              SlyX  2 eerleeLEiklafqedtieeLndvvaeqqq....qidrlqrqlrllaerlkeleessgasea 59
                                       +r+eeLE +l   +d ieeL ++++e  +    + +  + ++  ++++++ele++ ++++ 
  gi|300713031|ref|YP_003738843.1| 35 TNRVEELEAELNRKDDRIEELEAELTEYKRfagsEFADVRGRITDVEDQIQELETTLQETPT 96
                                      68*************************98755558899999999999999999998877665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 7.8
                                       HHHHHHHHHHHHHHHHT-XXXXXXXXX CS
                              SlyX  30 qqqidrlqrqlrllaerlkeleessga 56 
                                       +++++  q++ r +a+ +++ +e+++a
  gi|300713031|ref|YP_003738843.1| 129 NRELTTNQKRARFIAQDVQDYAEKAPA 155
                                       578888899999999999998888765 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   9.4      0.02       3.2      67     135 ..      23      91 ..       7      94 .. 0.62
   2 ?    4.0   0.9      0.28        47      22      46 ..      80     104 ..      63     153 .. 0.61
   3 ?    0.1   0.0       4.7   7.7e+02      19      64 ..     143     188 ..     128     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.02
                    CENP-F_leu_zip  67 elreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaaveeLqtql 135
                                       +l+ ++ +L+al++  eeLe el+ k +r++eLe+   + +++   + ++ +    + + +++eL+t l
  gi|300713031|ref|YP_003738843.1|  23 TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTL 91 
                                       456666777777777777777777777777777776666665544444443334444455555555555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.28
                    CENP-F_leu_zip  22 LkdkvenLerelemseenqekvile 46 
                                       ++d++++Le  l++   + + v  e
  gi|300713031|ref|YP_003738843.1|  80 VEDQIQELETTLQETPTETTTVAAE 104
                                       4566666665555554443333332 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 4.7
                    CENP-F_leu_zip  19 adsLkdkvenLerelemseenqekvileaEtskaevetlkeeieel 64 
                                       a  ++d +e+  + l    +   kvi+ aE sk   +t+   ++ l
  gi|300713031|ref|YP_003738843.1| 143 AQDVQDYAEKAPAGLVLDSQTIAKVITAAEGSKPHTQTVARVMNFL 188
                                       5555666666666666666677788999999998888887666554 PP

>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.6      0.12        20     123     157 ..      22      49 ..       3      63 .. 0.53
   2 ?   10.1   1.2    0.0023      0.38     113     212 ..      51     152 ..      47     169 .. 0.86
   3 ?   -1.4   0.0       7.7   1.3e+03     170     203 ..     169     200 ..     158     220 .. 0.58

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.12
                              Not3 123 earewlkdaideLneqvekleaeieklsskkkkkk 157
                                               ++++++eq+e+l+  +e+l+++ ++k+
  gi|300713031|ref|YP_003738843.1|  22 P-------TLESISEQLEALTNRVEELEAELNRKD 49 
                                       3.......445555555555555555555544443 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0023
                              Not3 113 kldpkekekeearewlkdaideLneqvekleaeieklsskkkkkkkskekarveeleklierhkfhieklelllrll 189
                                       ++++ e e +e +++  +   +++ ++ ++e +i++l+++ ++  +++++   ee+ ++++++++ +e++ +l + +
  gi|300713031|ref|YP_003738843.1|  51 RIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPEHV 127
                                       4577889999999999999******************9998888877766799999999999*************** PP

                              Not3 190 eneelep..eevekikedieyyves 212
                                        n el++  ++ + i +d++ y e+
  gi|300713031|ref|YP_003738843.1| 128 ANRELTTnqKRARFIAQDVQDYAEK 152
                                       ****999434456699999999987 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 7.7
                              Not3 170 klierhkfhieklelllrlleneelepeevekik 203
                                       +  e  k h++ +  ++++le+  l +++ve++k
  gi|300713031|ref|YP_003738843.1| 169 TAAEGSKPHTQTVARVMNFLEK--LGKDDVEQTK 200
                                       4455555566666666666543..3344444444 PP

>> Tmemb_cc2  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.8    0.0007      0.12     201     276 ..      12      87 ..       2     101 .. 0.78
   2 ?   -1.2   0.1       5.4   8.9e+02     223     225 ..     142     144 ..      87     202 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0007
                         Tmemb_cc2 201 seestasasksaesesqeklekileelqeikeeqerleeelerlkeqlkkelkllkqaLqeeryryerLEeqlndl 276
                                        +++ a++++ + ++ +e+le++++ ++e+++e +r ++++e+l+ +l +   ++ + + ++r r+++ E+q+ +l
  gi|300713031|ref|YP_003738843.1|  12 ATDQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQEL 87 
                                       2222223355566677889999999999999999999999******99999999*******************998 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 5.4
                         Tmemb_cc2 223 ile 225
                                       i +
  gi|300713031|ref|YP_003738843.1| 142 IAQ 144
                                       111 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   9.0    0.0016      0.26      36     130 ..      29     109 ..      19     153 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0016
                     Jnk-SapK_ap_N  36 ElLeslasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelka 112
                                       E+              le l + +e+Le e++r+    ++ e el e+     +e  +++ +++++e++++ele+ +
  gi|300713031|ref|YP_003738843.1|  29 EQ--------------LEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTL 91 
                                       44..............5555555555555555555555555555555555555555555555555555555555444 PP

                     Jnk-SapK_ap_N 113 knaadqlsrleekeaelk 130
                                       +++ ++++++  +e+ ++
  gi|300713031|ref|YP_003738843.1|  92 QETPTETTTVAAEETGSQ 109
                                       444444444444444433 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.8    0.0078       1.3      36      72 ..      22      58 ..      10      64 .. 0.83
   2 ?    2.0   0.1       1.4   2.3e+02      22      42 ..      83     103 ..      68     140 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0078
                            Cnn_1N 36 eqkeellkenielkveveslqkelkekkkllreaeka 72
                                       + e++ +++  l  +ve+l+ el++k+++++e+e +
  gi|300713031|ref|YP_003738843.1| 22 PTLESISEQLEALTNRVEELEAELNRKDDRIEELEAE 58
                                      5678889999999999999999999999999999875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 1.4
                            Cnn_1N  22 riyfLeerleklseeqkeell 42 
                                       +i++Le  l+++++e+ + + 
  gi|300713031|ref|YP_003738843.1|  83 QIQELETTLQETPTETTTVAA 103
                                       456666666666665554444 PP

>> CASP_C  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.2    0.0015      0.25      63     125 ..       4      63 ..       1      66 [. 0.82
   2 ?    3.6   0.9      0.22        37      10      90 ..      73     169 ..      64     171 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0015
                            CASP_C  63 ptssiisgaeesesaesssessiLpivtsQRDRFrkrnaeLEeelrkqeetvsslraeiaslq 125
                                       pt+s++s a+++    +++e+  L+ + +Q +   +r++eLE+el+++ + +++l ae+++ +
  gi|300713031|ref|YP_003738843.1|   4 PTTSTESTATDQP---ATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYK 63 
                                       5666666666544...3348999999*******************************998766 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.22
                            CASP_C  10 leaeleeqkeLnekLEndllkvqseasnaskasdassagsevsrka.ese........gr.....ksptssiisgae 72 
                                       ++ ++++ ++ +++LE+ l+++ +e+++ +++++ s++ +  ++ + e+         +r     ++ ++ i++ ++
  gi|300713031|ref|YP_003738843.1|  73 VRGRITDVEDQIQELETTLQETPTETTTVAAEETGSQTTT--TETPlERIctlpehvaNRelttnQKRARFIAQDVQ 147
                                       5566777778888888888888888876654444443332..23332221334444442222111122222222222 PP

                            CASP_C  73 esesaesss.........essiLpivt 90 
                                       +       +         +++i +++t
  gi|300713031|ref|YP_003738843.1| 148 DYA-----EkapaglvldSQTIAKVIT 169
                                       211.....1234456666666666666 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.9      0.14        23      49      70 ..      24      45 ..      13      46 .. 0.88
   2 ?    7.0   3.9     0.039       6.4      35      70 ..      24      59 ..      22      60 .. 0.91
   3 ?    6.7   0.5     0.049       8.1      28      71 .]      48      92 ..      47      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.14
                          JIP_LZII 49 leslqkakerlesrikelEeel 70
                                      les+ +++e+l +r++elE+el
  gi|300713031|ref|YP_003738843.1| 24 LESISEQLEALTNRVEELEAEL 45
                                      7899999************998 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.039
                          JIP_LZII 35 vdeLtsereiLreEleslqkakerlesrikelEeel 70
                                      ++ ++++ e+L++ +e+l+++++r  +ri+elE+el
  gi|300713031|ref|YP_003738843.1| 24 LESISEQLEALTNRVEELEAELNRKDDRIEELEAEL 59
                                      577899999************************998 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.049
                          JIP_LZII 28 kddLIarvd.eLtsereiLreEleslqkakerlesrikelEeelk 71
                                      kdd I++++ eLt+ +    +E+  ++   + +e++i+elE +l+
  gi|300713031|ref|YP_003738843.1| 48 KDDRIEELEaELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQ 92
                                      566666666578888889999********************9986 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.0    0.0034      0.56      33      69 ..      29      65 ..      19      69 .. 0.71
   2 ?    6.2   4.0     0.062        10       3      24 ..      41      62 ..      40     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0034
                        TMF_DNA_bd 33 ntikkLrkknkelekeikelkkkleklekeleeleer 69
                                      +++  L   ++ele e+++ ++++e+le el+e +++
  gi|300713031|ref|YP_003738843.1| 29 EQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRF 65
                                      5566677777777777777777777777777777665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.062
                        TMF_DNA_bd  3 lekklkeKDeqIaqLmeEGekL 24
                                      le+ l+ KD++I++L +E++++
  gi|300713031|ref|YP_003738843.1| 41 LEAELNRKDDRIEELEAELTEY 62
                                      6677778888888887777665 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.8     0.027       4.4     104     138 ..      26      57 ..      12      64 .. 0.80
   2 ?    5.7   0.9     0.092        15      31      65 ..      70     104 ..      65     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.027
                                       ---SSHHHHHHHHHHHHHHHS-HHH.HHHHHHHHH CS
                             Nup54 104 aldaeEeelrarletleaqlndpaqlkgrvnelwa 138
                                       +++++ e+l +r+e+lea+ln++     r++el a
  gi|300713031|ref|YP_003738843.1|  26 SISEQLEALTNRVEELEAELNRKD---DRIEELEA 57 
                                       678889999999999999999753...46666655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.092
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                             Nup54  31 FedLakRvkaQqkevaqhrerlkeisdrleeleqk 65 
                                       F d++ R ++ ++++++++  l+e+ ++++ ++ +
  gi|300713031|ref|YP_003738843.1|  70 FADVRGRITDVEDQIQELETTLQETPTETTTVAAE 104
                                       88999999999999999999999999999998833 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.0    0.0091       1.5       2      40 ..      23      61 ..      22      69 .. 0.81
   2 ?    0.7   0.0       4.6   7.6e+02      24      45 ..      70      91 ..      67     104 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0091
                       Cep57_MT_bd  2 tlrpsqspkeaLaevlkeLedEfehlklelqelaaqyna 40
                                      tl++ ++  eaL   ++eLe E+     + +el+a++ +
  gi|300713031|ref|YP_003738843.1| 23 TLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTE 61
                                      778888888999999999999999999999999888876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 4.6
                       Cep57_MT_bd 24 fehlklelqelaaqynaldpsl 45
                                      f+  + + +++++q+++l+  l
  gi|300713031|ref|YP_003738843.1| 70 FADVRGRITDVEDQIQELETTL 91
                                      5555555556666666655433 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.8    0.0038      0.63      29     111 ..      35     119 ..       4     199 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0038
                        V_ATPase_I  29 vrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkeln..elv 103
                                         r++e+e +l+  ++ ie+le + +++++ + s+ a+ + ++ ++e+++++le+ l+e+ ++++++ +e +  + +
  gi|300713031|ref|YP_003738843.1|  35 TNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETPTETTTVAAEETgsQTT 111
                                       34566666666666666666666666666556666666666666666666666666666665555554443310222 PP

                        V_ATPase_I 104 elkavlek 111
                                        ++  le+
  gi|300713031|ref|YP_003738843.1| 112 TTETPLER 119
                                       33333333 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.2     0.045       7.4       3      90 ..       8     109 ..       5     119 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.045
                              FlxA   3 sssasssssssgsasqiasLqkQiknlqkqLkelses...deltkeekk...........kqqqliqaQIqqlqaQI 65 
                                       + s+++ +  ++ +  ++s+ +Q++ l++ ++el ++   ++   ee +                +   I++++ QI
  gi|300713031|ref|YP_003738843.1|   8 TESTATDQPATTEEPTLESISEQLEALTNRVEELEAElnrKDDRIEELEaelteykrfagSEFADVRGRITDVEDQI 84 
                                       44555555566677788888888888888888888886553333333334455555677755566777777777777 PP

                              FlxA  66 aqlqqqqaekaqekqqsekeeksks 90 
                                       + l+   +e   e+   + ee+ ++
  gi|300713031|ref|YP_003738843.1|  85 QELETTLQETPTETTTVAAEETGSQ 109
                                       7777666666655555555554433 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.055         9       3      18 ..      31      46 ..      29      47 .. 0.87
   2 ?   11.1   1.6    0.0018      0.29       2      19 ..      44      61 ..      43      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.055
                    Pox_A_type_inc  3 msrlRsRIsDLErqLs 18
                                      +++l +R+++LE +L+
  gi|300713031|ref|YP_003738843.1| 31 LEALTNRVEELEAELN 46
                                      577889*********8 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0018
                    Pox_A_type_inc  2 EmsrlRsRIsDLErqLse 19
                                      E++r+ +RI++LE +L+e
  gi|300713031|ref|YP_003738843.1| 44 ELNRKDDRIEELEAELTE 61
                                      99**************98 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.3    0.0046      0.75      54     158 ..      15     120 ..       1     190 [. 0.69

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0046
                          ISG65-75  54 yllketkdklayienakekvdyyvekleslleeakekgtltesdaekl....kkaceeAkaknkkarekakkaleka 126
                                       +   + + +l++i +++e++ ++ve+le+ l++++   +  e++ ++      ++++++   +++ +++ ++  ++ 
  gi|300713031|ref|YP_003738843.1|  15 QPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYkrfaGSEFADVRGRITDVEDQIQELETTL 91 
                                       33444455778888888888888888888777766544444444444422236677777778888888888888888 PP

                          ISG65-75 127 ekaskkakeaakkAlGeeleeensnstGLlkv 158
                                       +++ +++++ a++  G++ +   +  t L ++
  gi|300713031|ref|YP_003738843.1|  92 QETPTETTTVAAEETGSQTT---TTETPLERI 120
                                       88888888888887787443...666666666 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  10.5     0.017       2.7      77     198 ..      28     150 ..      12     153 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.017
                           DUF3552  77 rnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrqeLeri.sgLtkeeAk 152
                                        ++l++l +R+++ e +L+rk++ +e+ e++l+e ++   ++ ++++ + +++e+ ++e ++ L++   + t+  A 
  gi|300713031|ref|YP_003738843.1|  28 SEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETpTETTTVAAE 104
                                       57789999**************************9999899999999999999999999999998762344455555 PP

                           DUF3552 153 eilleeveeelkheaAkmikeieeeakeeAdkkAkeiialAiQrcA 198
                                       e   +++ +e+  e+  +  e  ++ + + ++k  + ia+ +Q +A
  gi|300713031|ref|YP_003738843.1| 105 ETGSQTTTTETPLERICTLPEHVANRELTTNQKRARFIAQDVQDYA 150
                                       5556666666666666666666666666665555556666666665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.9    0.0062         1      42     113 ..      22      93 ..       6     102 .. 0.78
   2 ?    4.9   0.2      0.17        27      37      64 ..      77     104 ..      63     155 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0062
                                       CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH CS
                         Fib_alpha  42 neleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvles 113
                                        +le+is++ +   + v+e++  l++k    ++ +  ++++++   +e ++++ +i++ e +i++L ++l++
  gi|300713031|ref|YP_003738843.1|  22 PTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQE 93 
                                       578888888888888888888888888888888888888888888888888888888888888888877776 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.17
                                       HCCCCCCCCCCCCHHHHHHHHHHHHHHH CS
                         Fib_alpha  37 lekleneleeisnstkeaeelvkeikds 64 
                                       ++++e++++e++ + +e+ + ++++   
  gi|300713031|ref|YP_003738843.1|  77 ITDVEDQIQELETTLQETPTETTTVAAE 104
                                       4444444444444444444333333333 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.5     0.034       5.6      19     116 ..      26     160 ..      11     185 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.034
                                       HHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHTTTS...........-HHHHHHHHHHHHHHHHHHHHHH.. CS
                              OmpH  19 aaqeqlekkf...kklqaeleakekelqklqeelqkkakkle..........keekeqelqkkeqelqqkqqqka.. 80 
                                       ++ eqle+     ++l+ael++k + +++l++el ++++  +           ++ e ++q++e+ lq+   ++   
  gi|300713031|ref|YP_003738843.1|  26 SISEQLEALTnrvEELEAELNRKDDRIEELEAELTEYKRF-AgsefadvrgrITDVEDQIQELETTLQETPTETTtv 101
                                       4445554444444788888888888888888877644443.134666666665555555666666666533333233 PP

                                       ..HH.....................HHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEE CS
                              OmpH  81 ..qe.....................lqkkqqellkpildkinkaikevakekgydlvld 116
                                         +e                     +++++    ++    i + ++++a++  + lvld
  gi|300713031|ref|YP_003738843.1| 102 aaEEtgsqttttetplerictlpehVANRELTTNQKRARFIAQDVQDYAEKAPAGLVLD 160
                                       32224555555555555555555555555555555555666666666666666666666 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  11.2     0.011       1.8     130     208 ..      19     123 ..       3     205 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.011
                           DUF4407 130 a.......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqael 199
                                       +        +++l++l++++++l+ae++ +++r+++l+ae++ e++   g++   v+G+ +  +    q+++++++l
  gi|300713031|ref|YP_003738843.1|  19 TeeptlesISEQLEALTNRVEELEAELNRKDDRIEELEAELT-EYKRFAGSEFADVRGRITDVED---QIQELETTL 91 
                                       123456669999999999999999999999999999999999.7777667776666666555444...444444444 PP

                           DUF4407 200 aelkakld.......................a 208
                                       +e  ++ +                        
  gi|300713031|ref|YP_003738843.1|  92 QETPTETTtvaaeetgsqttttetplerictL 123
                                       44444422333555555555555555554441 PP

>> IFP_35_N  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.9      0.34        56       2      25 ..      24      47 ..      23      49 .. 0.87
   2 ?    5.8   2.4      0.09        15       2      28 ..      38      64 ..      37      67 .. 0.91
   3 ?    6.3   0.1     0.063        10      12      49 ..      80     116 ..      72     130 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.34
                          IFP_35_N  2 iaeitkeniqLkeeiqkLeaELQe 25
                                      +++i ++   L +++  LeaEL +
  gi|300713031|ref|YP_003738843.1| 24 LESISEQLEALTNRVEELEAELNR 47
                                      5789999999************75 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.09
                          IFP_35_N  2 iaeitkeniqLkeeiqkLeaELQettr 28
                                      ++e++ e  + +++i  LeaEL e +r
  gi|300713031|ref|YP_003738843.1| 38 VEELEAELNRKDDRIEELEAELTEYKR 64
                                      67999999999***********99988 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.063
                          IFP_35_N  12 LkeeiqkLeaELQettrefqikediPetKikftsvEtP 49 
                                        +++iq Le+ LQet  e      + et  + t  EtP
  gi|300713031|ref|YP_003738843.1|  80 VEDQIQELETTLQETPTE-TTTVAAEETGSQTTTTETP 116
                                       5789**********9888.4555666666666666666 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.6    0.0049       0.8      32      93 ..      25      94 ..      22     104 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0049
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT........S-TCCCCCCCHHHHHHHHHHHHHHHHH CS
                      Seryl_tRNA_N 32 leldekrrelqveleelqaerNelskeIgkakkkk........edaeeliaevkelkeelkaleaelkel 93
                                       ++ e+ ++l +++eel ae N+    I+++ ++          + ++++ ++ ++ +++++le++l+e 
  gi|300713031|ref|YP_003738843.1| 25 ESISEQLEALTNRVEELEAELNRKDDRIEELEAELteykrfagSEFADVRGRITDVEDQIQELETTLQET 94
                                      5667777788888888888888888888888877764444444555555555555555555555555555 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.6     0.019       3.1      33      71 ..      21      59 ..       6      65 .. 0.61
   2 ?    5.4   0.6      0.15        25      24      69 ..      58     101 ..      56     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.019
                                      HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHH CS
                             DUF16 33 kqrLkkieakvdklgeqinkleqkvekqgekikelkveq 71
                                      +  L+ i +++++l +++++le + ++++++i+el++e 
  gi|300713031|ref|YP_003738843.1| 21 EPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAEL 59
                                      345556666666666666666666666666666666554 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.15
                                       HHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHH CS
                             DUF16  24 qlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkv 69 
                                       +l e+k     ++ ++  +++  + qi++le + ++   + +  +v
  gi|300713031|ref|YP_003738843.1|  58 ELTEYKRFAGSEFADVRGRITDVEDQIQELETTLQETPTETT--TV 101
                                       788999999999999999999999999999988766544432..22 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.7    0.0037      0.61      11      70 ..      20      92 ..      11     103 .. 0.62
   2 ?    2.3   0.7       1.6   2.6e+02      22      60 ..      77     115 ..      71     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0037
                           DUF2203 11 lLpllkelleelralrkeleeleeeleeakaeaekse.............aaeleaeleeleaeieelveeie 70
                                        p+l+++ e+l al++++eele+el+++ ++ e+ e             +a  + +++ +e++i+el ++++
  gi|300713031|ref|YP_003738843.1| 20 EEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEaelteykrfagseFADVRGRITDVEDQIQELETTLQ 92
                                      5578888888888888888888888888888887766666666333333344444444444444444444443 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 1.6
                           DUF2203  22 lralrkeleeleeeleeakaeaekseaaeleaeleelea 60 
                                       + +++++++ele+ l+e+ +e+++ +a+e  ++ ++ e+
  gi|300713031|ref|YP_003738843.1|  77 ITDVEDQIQELETTLQETPTETTTVAAEETGSQTTTTET 115
                                       555566666666666666655544443333333333333 PP

>> Cep57_CLD  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.5     0.016       2.7     102     152 ..      11      61 ..       2      65 .. 0.81
   2 ?    2.9   0.1      0.62     1e+02     130     165 ..      71     106 ..      66     120 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.016
                         Cep57_CLD 102 aslekekkqesselqaklekLekLEkeylrLtatqklaekkikeLeekLke 152
                                       +++++  ++e+  l++  e+Le L ++  +L+a+ +  +++i+eLe  L+e
  gi|300713031|ref|YP_003738843.1|  11 TATDQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTE 61 
                                       334444468899999999****************************99987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.62
                         Cep57_CLD 130 lrLtatqklaekkikeLeekLkeEehqrklvqdkaa 165
                                        +++ + +  e++i+eLe  L+e   +   v     
  gi|300713031|ref|YP_003738843.1|  71 ADVRGRITDVEDQIQELETTLQETPTETTTVAAEET 106
                                       555555666788888888888887776666655544 PP

>> Ima1_N  Ima1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3      0.33        54      64     121 ..      10      67 ..       1      74 [. 0.77
   2 ?    5.4   0.9      0.19        31      34      98 ..      74     138 ..      66     225 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.33
                            Ima1_N  64 kseeaessssssllCskClknqelkvsklaeylpkededdpeyeekeealeeykkele 121
                                       ++++++ ++++++  ++ +++ e ++++++e + + +++d+  ee e++l+eyk+   
  gi|300713031|ref|YP_003738843.1|  10 STATDQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAG 67 
                                       3345677788888888899999999999999988669999999**********98655 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.19
                            Ima1_N  34 dGdindeipeqeeeslneaakkaaaskskskseeaessssssllCskClknqelkvsklaeylpk 98 
                                       +G i+d   +++e +++ +++ +++++ +++++ +++++++++l + C+  +++ +++l+    +
  gi|300713031|ref|YP_003738843.1|  74 RGRITDVEDQIQELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPEHVANRELTTNQKR 138
                                       56666644444444444333333333333333455666677777777777666666666554332 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  14.3     0.023       3.9      63     148 ..      14     105 ..       2     120 .. 0.72
   2 ?    0.5   0.5       2.3   3.7e+02      95     138 ..     104     148 ..      99     167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.023
                        MscS_porin  63 lqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelq....trperaqqqltearqrlqeirnr 135
                                        q +++e++  +  +  le+L +r+++ +++l +   ++ +l+++l+e+     +  + ++ ++t+   ++qe+++ 
  gi|300713031|ref|YP_003738843.1|  14 DQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKrfagSEFADVRGRITDVEDQIQELETT 90 
                                       344555555555556678899999999999999999999999999988753333778999***************** PP

                        MscS_porin 136 Lnstaaage..alsq 148
                                       L++t+++++  a ++
  gi|300713031|ref|YP_003738843.1|  91 LQETPTETTtvAAEE 105
                                       *99988888553333 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 2.3
                        MscS_porin  95 qelqeqlaqlnsqlvelqtrpera.qqqltearqrlqeirnrLns 138
                                       +e+ +q ++ ++ l  + t pe +   +lt++++r   i ++ ++
  gi|300713031|ref|YP_003738843.1| 104 EETGSQTTTTETPLERICTLPEHVaNRELTTNQKRARFIAQDVQD 148
                                       566777888888888999999975155799999999988887755 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.3    0.0014      0.23     318     371 ..      10      63 ..       2      68 .. 0.84
   2 ?    3.3   0.5      0.18        29     331     375 ..      69     113 ..      63     129 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0014
                            DUF812 318 aeteeelkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeek 371
                                       ++  ++  + +e  le+++eq+e+l +++eele+e+++ +++i+++e el+e k
  gi|300713031|ref|YP_003738843.1|  10 STATDQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYK 63 
                                       455566677888899********************************9999877 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.18
                            DUF812 331 eleelqeqieeleskieeleeeikklessikqveeeleeekeene 375
                                       e ++++ +i ++e +i+ele ++++  ++++ v  e +  +++++
  gi|300713031|ref|YP_003738843.1|  69 EFADVRGRITDVEDQIQELETTLQETPTETTTVAAEETGSQTTTT 113
                                       556677777777777777777777766666555544444444443 PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3    0.0052      0.86      23      43 ..      23      43 ..       9      45 .. 0.80
   2 ?    2.3   0.3      0.93   1.5e+02      19      33 ..      79      93 ..      77      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0052
                                      HHHHHHHHHHHHHHHHHHHHH CS
                    Matrilin_ccoil 23 eiqaLtqkLeavtkRlealEn 43
                                      ++++ +++Lea t+R+e lE 
  gi|300713031|ref|YP_003738843.1| 23 TLESISEQLEALTNRVEELEA 43
                                      477888899999999999996 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.93
                                      HHHHHHHHHHHHHHH CS
                    Matrilin_ccoil 19 kVeseiqaLtqkLea 33
                                       Ve++iq L ++L +
  gi|300713031|ref|YP_003738843.1| 79 DVEDQIQELETTLQE 93
                                      79********99976 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.5    0.0014      0.23      69     119 ..       9      59 ..       1      63 [. 0.83
   2 ?   -0.7   0.0       8.9   1.5e+03      90     114 ..      69      93 ..      61     102 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0014
                              Uds1  69 kssaarsnskssreslakaeeelaeserkvdelaselekleeraaevrrrL 119
                                       +s a+++ +++++ +l+   e+l++++++v+el++el + ++r  e++ +L
  gi|300713031|ref|YP_003738843.1|   9 ESTATDQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAEL 59 
                                       3566677788888899999**************************999887 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 8.9
                              Uds1  90 elaeserkvdelaselekleeraae 114
                                       e a+   ++ ++++++++le+ ++e
  gi|300713031|ref|YP_003738843.1|  69 EFADVRGRITDVEDQIQELETTLQE 93 
                                       5556666777777777777776665 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.8     0.055       9.1      11      55 ..      28      72 ..       7     206 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.055
                                      HHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHH CS
                              GrpE 11 edeeeeleeeleelekevkelkekllrllaefenlrkrtekekee 55
                                       +++e+l +++eele+e++   +++++l+ae+ ++++ +  e+++
  gi|300713031|ref|YP_003738843.1| 28 SEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKRFAGSEFAD 72
                                      334444444444444444444444445555555555544444444 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.2    0.0033      0.54       8      43 ..      26      61 ..       9      74 .. 0.80
   2 ?    5.0   0.5      0.17        28      12      43 ..      76     107 ..      67     135 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0033
                             Spc24  8 riakelsdleselesleselaelkeeleeleeesee 43
                                      +i+++l+ l++ +e+le+el+++ +++eele e  e
  gi|300713031|ref|YP_003738843.1| 26 SISEQLEALTNRVEELEAELNRKDDRIEELEAELTE 61
                                      577888888888888888888888888888888776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.17
                             Spc24  12 elsdleselesleselaelkeeleeleeesee 43 
                                        ++d+e+++++le++l+e  +e +++  e+  
  gi|300713031|ref|YP_003738843.1|  76 RITDVEDQIQELETTLQETPTETTTVAAEETG 107
                                       56777888888888877777777776665554 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2     0.029       4.8      41      73 ..      23      55 ..       6      64 .. 0.74
   2 ?    4.4   2.5      0.28        45      25      76 ..      74     126 ..      65     152 .. 0.61
   3 ?    0.2   0.1       5.8   9.5e+02      51      74 ..     162     185 ..     126     200 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.029
                            DUF948 41 qvdpilkevedllakvnelledvneklekvdpl 73
                                       +++i++++e+l++ v+el +++n+k +++++l
  gi|300713031|ref|YP_003738843.1| 23 TLESISEQLEALTNRVEELEAELNRKDDRIEEL 55
                                      466777788888888888888888888888776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.28
                            DUF948  25 kktldeaaatieelekqvdpilkevedllakvne.lledvneklekvdpltea 76 
                                       +  ++ ++++i+ele  ++++ +e++++ a+     +   +  le++ +l e+
  gi|300713031|ref|YP_003738843.1|  74 RGRITDVEDQIQELETTLQETPTETTTVAAEETGsQTTTTETPLERICTLPEH 126
                                       34455566666666666666666666555443320233333344444444444 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 5.8
                            DUF948  51 dllakvnelledvneklekvdplt 74 
                                       +++akv + +e+ + ++++v +++
  gi|300713031|ref|YP_003738843.1| 162 QTIAKVITAAEGSKPHTQTVARVM 185
                                       334444444444444444444444 PP

>> DUF5446  Family of unknown function (DUF5446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.2     0.008       1.3      19      56 ..      25      61 ..      21      69 .. 0.86
   2 ?    4.9   0.5      0.18        29      15      43 ..      78     106 ..      72     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.008
                           DUF5446 19 eeltevEkelseavneteaekeekeeerldllekElkd 56
                                      e+++e  ++l+++v e+eae +  +++r++ le El +
  gi|300713031|ref|YP_003738843.1| 25 ESISEQLEALTNRVEELEAELNR-KDDRIEELEAELTE 61
                                      567777789**********9876.689*********98 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.18
                           DUF5446  15 eeiEeeltevEkelseavneteaekeeke 43 
                                        ++E++++e E  l+e   et+  + e+ 
  gi|300713031|ref|YP_003738843.1|  78 TDVEDQIQELETTLQETPTETTTVAAEET 106
                                       699*************9999998887775 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.0    0.0052      0.86      60     106 ..      18      64 ..       6      70 .. 0.86
   2 ?    1.6   0.4       1.9   3.2e+02      19      31 ..      82      94 ..      66     155 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0052
                       TMF_TATA_bd  60 kelkkeleelekeleelqeryetlLellGeksEeveELraDvaDlKe 106
                                       ++++ +le+++++le+l++r e+l   l  k++++eEL+a++ + K 
  gi|300713031|ref|YP_003738843.1|  18 TTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEYKR 64 
                                       566778899999******************************99986 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 1.9
                       TMF_TATA_bd 19 seirrlEgElasl 31
                                       +i++lE+ l+++
  gi|300713031|ref|YP_003738843.1| 82 DQIQELETTLQET 94
                                      2222222222222 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.0     0.016       2.6      69     106 ..      25      62 ..       5      68 .. 0.70
   2 ?    7.5   0.7     0.025       4.2      36      88 ..      69     126 ..      63     147 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.016
                     Tropomyosin_1  69 ekkktnnealtrkiqlLEeeleesdkkLkettekLret 106
                                       e+ + + ealt +++ LE el++ d +++e    L+e 
  gi|300713031|ref|YP_003738843.1|  25 ESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEY 62 
                                       34456677999999999999999999999988888875 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.025
                     Tropomyosin_1  36 eiksLtkknqqleeevekleeklkea.....kekaeesekkktnnealtrkiqlLEee 88 
                                       e ++   ++  +e+++ +le++l+e+     + +aee+ ++ t+ e+   +i  L e 
  gi|300713031|ref|YP_003738843.1|  69 EFADVRGRITDVEDQIQELETTLQETptettTVAAEETGSQTTTTETPLERICTLPEH 126
                                       5666777889999999999999988622111345677777777777666666666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.9     0.014       2.3     146     199 ..      29      91 ..       7      96 .. 0.68
   2 ?    0.2   0.1       5.6   9.2e+02     171     171 ..      93      93 ..      69     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.014
                            AAA_23 146 felkdkkerleelekeleeledekkllekleqekekek...........eleeleeeleeilkel 199
                                       ++l++  +r+eele el+ + d++++le+++ e +              +++++e++++e++  l
  gi|300713031|ref|YP_003738843.1|  29 EQLEALTNRVEELEAELNRKDDRIEELEAELTEYK--RfagsefadvrgRITDVEDQIQELETTL 91 
                                       34455566778888888888888877777754433..2447877777777777777777776655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 5.6
                            AAA_23 171 l 171
                                       +
  gi|300713031|ref|YP_003738843.1|  93 E 93 
                                       2 PP

>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.9     0.053       8.8      10      47 ..      25      62 ..      21     130 .. 0.90
   2 ?    0.2   0.0       6.6   1.1e+03      31      48 ..     208     225 ..     176     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.053
                                      HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHH CS
                              PhoU 10 emlddalealeekdtelarevierddeidrlekeiers 47
                                      e +++ leal ++ +el  e+ ++dd+i++le e++++
  gi|300713031|ref|YP_003738843.1| 25 ESISEQLEALTNRVEELEAELNRKDDRIEELEAELTEY 62
                                      66778899*****99999****************9887 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 6.6
                                       HHHHHHHHHHHHHHHHHH CS
                              PhoU  31 ierddeidrlekeiersl 48 
                                       + +++ +dr++++ +r++
  gi|300713031|ref|YP_003738843.1| 208 VIDEEAADRYHDRCDRDI 225
                                       345888999999988875 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.4     0.057       9.4      40      76 ..      24      60 ..       5      65 .. 0.47
   2 ?    3.5   5.2      0.64   1.1e+02      26      84 ..      31      93 ..      28     100 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.057
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              BST2 40 aatcnqtvvtLkasLekekaqsqkqqakvqelqgeik 76
                                        + ++ ++ L++  e+ +a+ +++  +++el+ e++
  gi|300713031|ref|YP_003738843.1| 24 LESISEQLEALTNRVEELEAELNRKDDRIEELEAELT 60
                                      3333344444444444444444444444444444444 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.64
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              BST2 26 LtqaqeslreaeaqaatcnqtvvtLkasLekek....aqsqkqqakvqelqgeikkLnqkLqd 84
                                      L    + ++e ea+ +  +  +++L+a L++ k    ++  + + ++ + +++i++L+  Lq+
  gi|300713031|ref|YP_003738843.1| 31 LEALTNRVEELEAELNRKDDRIEELEAELTEYKrfagSEFADVRGRITDVEDQIQELETTLQE 93
                                      555555566666666666666677777776666221122333444555555555555555555 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   3.4       1.3   2.1e+02      40      62 ..      37      59 ..      11      64 .. 0.50
   2 ?    4.7   0.1      0.28        46      42      60 ..      74      92 ..      70      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 1.3
                                      HHHHHHHHHHHHHHHHHHHHHHH CS
                     MerR-DNA-bind 40 llarklaeleeriaeLqalraeL 62
                                       +++  ael+++ +++++l+aeL
  gi|300713031|ref|YP_003738843.1| 37 RVEELEAELNRKDDRIEELEAEL 59
                                      22222334444444444444444 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.28
                                      HHHHHHHHHHHHHHHHHHH CS
                     MerR-DNA-bind 42 arklaeleeriaeLqalra 60
                                      + ++ ++e +i+eL+ + +
  gi|300713031|ref|YP_003738843.1| 74 RGRITDVEDQIQELETTLQ 92
                                      67999*********98866 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.4      0.15        24      10      47 ..      24      61 ..      21      69 .. 0.67
   2 ?    4.9   0.5      0.25        41      14      46 ..      74     106 ..      67     191 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.15
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              YabA 10 leeleeqleelleeleelkeelaelleenaeLelenek 47
                                      le+++eqle+l++++eel++el++  ++ +eLe+e ++
  gi|300713031|ref|YP_003738843.1| 24 LESISEQLEALTNRVEELEAELNRKDDRIEELEAELTE 61
                                      56677777777777777777777777777777666555 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.25
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              YabA  14 eeqleelleeleelkeelaelleenaeLelene 46 
                                         +++++ ++++el+++l+e+  e +++ +e +
  gi|300713031|ref|YP_003738843.1|  74 RGRITDVEDQIQELETTLQETPTETTTVAAEET 106
                                       445555555555555555555555555555533 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.2     0.012         2       6      43 ..      24      61 ..      21      64 .. 0.85
   2 ?    1.7   0.1       1.9     3e+02      12      28 ..      76      92 ..      71     104 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.012
                              XhlA  6 lerietkldnleervdkleekaaeaeekiknleedlkk 43
                                      le i ++l+ l +rv++le   ++ + +i++le +l +
  gi|300713031|ref|YP_003738843.1| 24 LESISEQLEALTNRVEELEAELNRKDDRIEELEAELTE 61
                                      78888999999999999999999999999999988765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 1.9
                              XhlA 12 kldnleervdkleekaa 28
                                      ++ + e+++++le    
  gi|300713031|ref|YP_003738843.1| 76 RITDVEDQIQELETTLQ 92
                                      44444445555544443 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.4     0.021       3.4      36      66 ..      17      47 ..       7      52 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.021
                              PspB 36 saedekrLeellekAekleeRietLEriLda 66
                                        ++e +Le+++e+ e l++R+e LE+ L+ 
  gi|300713031|ref|YP_003738843.1| 17 ATTEEPTLESISEQLEALTNRVEELEAELNR 47
                                      4579999*******************97765 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.9    0.0076       1.3      27      59 ..      24      56 ..      21      68 .. 0.79
   2 ?    2.8   2.8      0.73   1.2e+02      42     119 ..      78     149 ..      60     182 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0076
                                      HHHHHHHHHHHHHHHHHHHHHHHCCCCTXXXXX CS
                            DivIVA 27 Ldqvakdyeallkeneelkekvkeleeklkeyk 59
                                      L+++++++eal +++eel++++++++++++e +
  gi|300713031|ref|YP_003738843.1| 24 LESISEQLEALTNRVEELEAELNRKDDRIEELE 56
                                      788888888888888888888888888888765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.73
                                       HHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                            DivIVA  42 eelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeiee 118
                                       ++++++++ele++l+e  +  +t     v+a+et  ++++ +++  e i    e+ a++ + + +++a+ ia+++++
  gi|300713031|ref|YP_003738843.1|  78 TDVEDQIQELETTLQETPTETTT-----VAAEETGSQTTT-TETPLERICTLPEHVANRELTTNQKRARFIAQDVQD 148
                                       44455555555555555544444.....555555555433.344444444444444555555555555555555555 PP

                                       X CS
                            DivIVA 119 l 119
                                        
  gi|300713031|ref|YP_003738843.1| 149 Y 149
                                       4 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.8    0.0057      0.93     110     161 ..       9      60 ..       4      64 .. 0.68
   2 ?    2.1   4.6       1.2     2e+02      30     106 ..      80     148 ..      68     204 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0057
                             ATG16 110 elqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDEls 161
                                       e  + ++ ++++e +l++++++ +al+ +++++e+el+ k+  +++l  El+
  gi|300713031|ref|YP_003738843.1|   9 ESTATDQPATTEEPTLESISEQLEALTNRVEELEAELNRKDDRIEELEAELT 60 
                                       5556666666777777777777777777777777777777777777777765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 1.2
                             ATG16  30 rtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrlle 106
                                         ++ ++   +l++ ++++++      +a e++ s+++++++  ++i +l + +a    el++ +k+    aq +++
  gi|300713031|ref|YP_003738843.1|  80 VEDQIQELETTLQETPTETTT------VAAEETGSQTTTTETPLERICTLPEHVAN--RELTTNQKRARFIAQDVQD 148
                                       333333333333333222222......11111111111223446666666666665..6677777776666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1836  (0.102404); expected 358.6 (0.02)
Passed bias filter:                     1002  (0.0558871); expected 358.6 (0.02)
Passed Vit filter:                       244  (0.0136092); expected 17.9 (0.001)
Passed Fwd filter:                       116  (0.00646996); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):             109  [number of targets reported over threshold]
# CPU time: 1.07u 0.41s 00:00:01.48 Elapsed: 00:00:00.54
# Mc/sec: 1315.42
//
Query:       gi|300713032|ref|YP_003738844.1|  [L=75]
Description: hypothetical protein HacjB3_18553 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-06   27.9   0.1    2.1e-06   27.5   0.1    1.2  1  DUF5049   Domain of unknown function (DUF5049)


Domain annotation for each model (and alignments):
>> DUF5049  Domain of unknown function (DUF5049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   1.2e-10   2.1e-06       3      39 ..      13      49 ..      12      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.2e-10
                           DUF5049  3 ekikeQilaiRdtGltNMfdvaaVqriAeergfyeLv 39
                                      e+  +Q   iR++G++ Mfd +aV ++Ae+++ + L+
  gi|300713032|ref|YP_003738844.1| 13 EEAIRQFETIRQSGEVDMFDRQAVLSVAEQEDMDALA 49
                                      66678***************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 560.29
//
Query:       gi|300713033|ref|YP_003738845.1|  [L=868]
Description: penicillin acylase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.4e-204  679.2   3.8   1.1e-203  679.0   3.8    1.0  1  Penicil_amidase  Penicillin amidase


Domain annotation for each model (and alignments):
>> Penicil_amidase  Penicillin amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  679.0   3.8    6e-208  1.1e-203       2     673 ..      73     852 ..      72     853 .. 0.93

  Alignments for each domain:
  == domain 1  score: 679.0 bits;  conditional E-value: 6e-208
                                       EEEEEEGGGEEEEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH-TBHHHHHHHHHHHT-HHHHHHHHH CS
                   Penicil_amidase   2 VeirrDewgvphIyAkneedlffaqGyvhAqdrlwqmellrrtarGrlaelfGpealesDrllrtlglrraaeaela 78 
                                       +ei +D+wgvph yA++ +d++f qG+ +A+drlwq++l+rr+++G+l+e+fG+e +e+Dr ++ + +r+++++e+ 
  gi|300713033|ref|YP_003738845.1|  73 AEILVDQWGVPHMYAEDVQDVAFVQGFNAARDRLWQIDLWRRRSSGELSEVFGEEWIEHDRGAHLFSYRGDIDEEW- 148
                                       89**************************************************************************. PP

                                       TS.....HHHHHHHHHHHHHHHHH-..-S..T-HH.HHHH---....S.........SS-.XXXXXX.....XX.X. CS
                   Penicil_amidase  79 alldpetralleaYaaGvNaylaelkaka..lPlefallgykpepWtpvdslavakvmaldlagnleeelarar.al 152
                                       +++ p+++ +++++a+GvNa++++++++   lP+ef++l+y+p++W+p+d ++ ++v+a +l  n+++e++ra    
  gi|300713033|ref|YP_003738845.1| 149 DAYGPDAETIATGFANGVNAFIDQTEENSdlLPVEFKALDYEPRRWEPED-IVRMRVHAITL--NVSSEVQRAItLR 222
                                       777899*******************9777888******************.88999999977..7899999998444 PP

                                       XXXXXXXX..................................................................... CS
                   Penicil_amidase 153 aaklgdekvaelfpp.............................................................. 167
                                       + + + e+v+++++p                                                              
  gi|300713033|ref|YP_003738845.1| 223 EFGEDVERVRQWLNPedweieipdgldldlipedvldvfeaatmshtsvsfdeddirnpevlddlsvltnsggstgt 299
                                       44667799998888667888888999999999999999999999999999999999999999999999999999999 PP

                                       .................X-EEEEE-TTTBTTSS-EEEEE-EEESSGGG--EEEEEEETTEEEEEEE-TT-S.SSEEE CS
                   Penicil_amidase 168 .................gSNnwvvsgerTasGkpllanDPHlglsapslwyqahlqapgldviGaslpGlPgvliGh 227
                                                        +SNnwvv++e T++G+p+lanDPH+++++psl y ah+++p++dviGa  pGlPg++iGh
  gi|300713033|ref|YP_003738845.1| 300 dpsgksdqmnekeeipsASNNWVVGPELTETGRPILANDPHRAHNVPSLRYIAHISSPEFDVIGAGEPGLPGISIGH 376
                                       999999999999999999*********************************************************** PP

                                       ESSEEEEEEE-SS-SEEEEEEEEETTEEEEEEETTEEEE-EEEEEEEEEE-TT.EEEEEEEEETTEEEE-....... CS
                   Penicil_amidase 228 nediAWglTnagadvqdlyaeklnpddptrylydgkwepmetrtetikvkggddsvtltvreTrhGPvvsd....gk 300
                                       n++ A+glT+++ d+qdly++++npddp++y+y+++we m+++tet+++++g+d +++++++T+hGPv+++    + 
  gi|300713033|ref|YP_003738845.1| 377 NGNTAFGLTIFYIDQQDLYVYETNPDDPNEYRYEDDWESMDVETETFEIRDGED-QEVELKFTQHGPVIYEdpdeNI 452
                                       *****************************************************9.77**************876555 PP

                                       ..TB--EEEEG-TTHHHHHHHHHT--SHHHHHHH........HHHH---SEEEEEEETT--EEEE--S--B---... CS
                   Penicil_amidase 301 avalrwtalepgdrsldallalnrarnvaefraa........lkdlaapaqnvvyADreGnigyqaagrvPvrpaad 369
                                       a+a+r+++++pg++ + + ++++ra+n++ef++a        ++ ++ap+ n v+AD++Gnig++  gr+Pvrp++d
  gi|300713033|ref|YP_003738845.1| 453 AFAVRTVWTDPGTTAYFGGIGYMRAENIDEFQDAmegeltpgMQGWGAPPENQVAADTDGNIGWFPGGRTPVRPNWD 529
                                       5*********************************99999999999*****************************999 PP

                                       TT--EEETT-GGGS--TB--GGGS-EEEE..SSEEEESSS----S............--T-HHHHHHHHHH..SS.. CS
                   Penicil_amidase 370 dgllpvpGsdsayeWtgyipfeelPqvvnPargyivtaNnrvlpddypa...algsdwappyRarrirelLeekaag 443
                                        gllpvpG+ ++yeW+gy  +++lP++vnP+rg+i+taN+ +lpddyp     +g +w +pyR++ri+e+L+e +++
  gi|300713033|ref|YP_003738845.1| 530 -GLLPVPGD-GRYEWDGYQHQSNLPREVNPDRGWIATANHFNLPDDYPVddpPIGFEWVAPYRYQRIAEVLSEFDEE 604
                                       .*******9.99***********************************9999999999**************776888 PP

                                       .-B-HHHHHHHHHT-BBTHHHHHHHHH....-..GGGHHHHHHHHH-.SB-STT-THHHHHHHHHHHHTT....... CS
                   Penicil_amidase 444 kkvtledmaalqtdtrsllaerllpll.aleaaeaeaaaaldlLraWdgrmdadsaaaalfaawlaalvralfedel 519
                                       ++++led ++lqtd  s + + +++ l +++ +e+++ +a+d L aWd  +dads +aal ++w+++ +++ +  el
  gi|300713033|ref|YP_003738845.1| 605 NTHSLEDSTDLQTDFLSIPIRIITEALaETDPNEDRLVEARDWLTAWDAVLDADSGEAALAEVWFEKHLQEAVTIEL 681
                                       88***********************997432234445558*************************998887766666 PP

                                       .........................---TTSTTT-SESHH.HHHHHHHHHHHHHHHST-T-B.....HHHHEEEE.E CS
                   Penicil_amidase 520 g..........rlaealeklleda.sfwwddptttpktrdelllaalaealaeleaaglgadpakwrwgklhrlelr 585
                                                   + ++l + +e++ +++ +dp++   trdelll++la+al+e+e+  lg++ ++w wg+l+++ ++
  gi|300713033|ref|YP_003738845.1| 682 IgkeafdhigtGDVRVLLEAVEEPeQRFGNDPVA---TRDELLLSTLADALDEVEEL-LGENRDEWAWGDLKKAFFE 754
                                       5688888888966788888888776888888766...7******************9.789999************* PP

                                       ...................EE---B-GGG.........EEEEEEE-EEEEEE--T.S.EEEEETT-S-S-TTSTTSS CS
                   Penicil_amidase 586 hplg..........fnrg.lpvgGgeetvnatsysarafrvtrgpsyrmvvdladrdkaravlpgGqsgnpgsphya 651
                                       h++           +n+g  p+gG+ +tv +++y+ + f+ t+g+s+rmv+d++ +d++ a+  +Gqsg+p+sp+y+
  gi|300713033|ref|YP_003738845.1| 755 HAMSsgvdeeaaesLNVGpEPMGGSGYTVWNANYNDD-FQLTSGASWRMVIDVGGWDNSLAMSVPGQSGDPESPFYD 830
                                       ******************************9999864.*************************************** PP

                                       HHHHHHHTT--EEE--SHHHHH CS
                   Penicil_amidase 652 Dqlelwaegeylplpfteaaie 673
                                       ++le++ +gey+pl++t++ai+
  gi|300713033|ref|YP_003738845.1| 831 NLLEMFVNGEYFPLLYTREAIQ 852
                                       *******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 5745.74
//
Query:       gi|300713034|ref|YP_003738846.1|  [L=108]
Description: hypothetical protein HacjB3_18578 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.094   13.5   0.0       0.14   12.9   0.0    1.3  1  DUF3349   Protein of unknown function (DUF3349)


Domain annotation for each model (and alignments):
>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.9e-06      0.14      53      90 ..      28      65 ..      14      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.9e-06
                                      SSS.BSHHHCHHHHHHHCTS---HHHHHHHHHHHHTTT CS
                           DUF3349 53 adeavdeedieelitkvteeepseedvarVaarLaagg 90
                                      a   +d++ i+++it+   ++p+ + varV + L++ g
  gi|300713034|ref|YP_003738846.1| 28 AGLVLDSQTIAKVITAAEGSKPHTQTVARVMDFLEKLG 65
                                      4567899*************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 832.27
//
Query:       gi|300713035|ref|YP_003738847.1|  [L=239]
Description: short-chain dehydrogenase/reductase SDR [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-52  178.3   3.8    1.9e-52  178.1   3.8    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    3.6e-44  150.6   2.7    4.4e-44  150.3   2.7    1.1  1  adh_short        short chain dehydrogenase
    1.1e-13   51.5   0.6    1.3e-13   51.2   0.6    1.1  1  KR               KR domain
    3.8e-07   30.4   1.8    4.7e-07   30.1   0.5    1.8  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      4e-07   29.7   0.6      6e-07   29.2   0.6    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
    8.4e-06   25.4   0.1    1.2e-05   24.9   0.1    1.3  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      3e-05   24.0   5.9    4.9e-05   23.3   5.9    1.5  1  NAD_binding_10   NAD(P)H-binding
    0.00023   20.4   0.6    0.00028   20.1   0.6    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    0.00038   20.0   7.1    0.00098   18.6   7.1    1.9  1  PALP             Pyridoxal-phosphate dependent enzyme
    0.00053   19.6   1.8    0.00081   19.0   1.8    1.3  1  NmrA             NmrA-like family
      0.004   16.8   0.3     0.0097   15.6   0.3    1.6  1  ApbA             Ketopantoate reductase PanE/ApbA
     0.0053   17.3   1.8      0.006   17.1   0.3    1.9  2  XdhC_C           XdhC Rossmann domain
     0.0057   17.2   1.0      0.015   15.9   1.0    1.8  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0069   16.3   1.1      0.015   15.2   1.1    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
     0.0085   15.2   3.3      0.026   13.6   3.2    1.7  2  RmlD_sub_bind    RmlD substrate binding domain
  ------ inclusion threshold ------
      0.011   15.1   0.1      0.018   14.4   0.1    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.056   13.7   0.4       0.11   12.7   0.4    1.6  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.1   3.8   1.8e-55   1.9e-52       5     234 .]       7     237 ..       3     237 .. 0.92

  Alignments for each domain:
  == domain 1  score: 178.1 bits;  conditional E-value: 1.8e-55
                                       SHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE--- CS
                      adh_short_C2   5 gIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnag 78 
                                        IGra+A +la+ G +v +++ ++ea +k+++e+++e+g++  ++++D++d+e+ +alve+++ ++g + ++vn ag
  gi|300713035|ref|YP_003738847.1|   7 AIGRAVAPTLARVGFDVTVAYHRDEAgAKAAAEAVREHGQRatIVQADIRDTEEAAALVEQAA-TLGPVAVVVNGAG 82 
                                       5*************************999999999999977435*****************75.78*********** PP

                                       --EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHH CS
                      adh_short_C2  79 iapklkgpfletsreefdraldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtry 154
                                        +++  gp++e+  +++ ++l+vn+ ++++++  a++l++e+ gs+vn+ssv+a  + +  + y++aKa+l ++tr+
  gi|300713035|ref|YP_003738847.1|  83 AVNP--GPVEEA-PDSIGNVLAVNVEGAINVTTPAIKLLRENdGSVVNISSVAAVHG-TVDTTYATAKAGLLGFTRS 155
                                       ****..997776.78999*******************998888*********88555.55589************** PP

                                       HHHHHGGGTEEEEEEEE--BHCTGGGGSTT...HHHHHHHHHHHSTTSS.-B-HHHHHHHHHHHCSGGGTT--SEEE CS
                      adh_short_C2 155 lAvelgpkgiRvNavspgpikTlaasgikg...fdelleelearaplgr.lgtpeevaeaalfLasdeasyitGqtl 227
                                       lA+e+gp+g+RvNav+pgp++T++++ i++    ++++ ++   + l r  +tpeeva+a+ fLa +e  +itG++l
  gi|300713035|ref|YP_003738847.1| 156 LAREVGPDGVRVNAVAPGPVDTPMNDTITDsleDRRFRGHHTVDTLLDRyEATPEEVASAVRFLATHE--FITGEIL 230
                                       ****************************997756678899999999999678**************88..******* PP

                                       EESTTGG CS
                      adh_short_C2 228 vvDgGlt 234
                                       +vDgG++
  gi|300713035|ref|YP_003738847.1| 231 HVDGGMS 237
                                       *****96 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   2.7   4.2e-47   4.4e-44       6     192 ..       2     185 ..       1     188 [. 0.94

  Alignments for each domain:
  == domain 1  score: 150.3 bits;  conditional E-value: 4.2e-47
                                       ESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEE CS
                         adh_short   6 tGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvL 81 
                                       tG+s+ IGra+a +la+ G++v+v + r e+ ++++a+ ++e+g++a+++q+D++d ee+ alve+a + lg++ v+
  gi|300713035|ref|YP_003738847.1|   2 TGGSGAIGRAVAPTLARVGFDVTVaYHRDEAGAKAAAEAVREHGQRATIVQADIRDTEEAAALVEQA-ATLGPVAVV 77 
                                       9***********************8888888888888888888************************.99******* PP

                                       EE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHH CS
                         adh_short  82 vnNAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavag 158
                                       vn+AG  ++gp++e   + + +v++vN+ g++++t  +++  l+++ G++vn+sSva+ v+  + + Y+++Ka++ g
  gi|300713035|ref|YP_003738847.1|  78 VNGAGAVNPGPVEEAP-DSIGNVLAVNVEGAINVTTPAIKL-LRENDGSVVNISSVAA-VHGTVDTTYATAKAGLLG 151
                                       ******99***98875.569********************9.679*************.77788999********** PP

                                       HHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
                         adh_short 159 ltrslakelaptgirvnavaPGlvdTdmakelre 192
                                       +trsla+e+ p+g+rvnavaPG+vdT+m+ ++++
  gi|300713035|ref|YP_003738847.1| 152 FTRSLAREVGPDGVRVNAVAPGPVDTPMNDTITD 185
                                       *****************************98876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.6   1.3e-16   1.3e-13       5     163 ..       1     156 [.       1     176 [. 0.86

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 1.3e-16
                                       EETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS- CS
                                KR   5 itGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeepp 81 
                                       +tGG G++G+++a +la+ g    v   R+   ++ +ka  ++++++g + ++v+aD+ d ++ +al+e++  + +p
  gi|300713035|ref|YP_003738847.1|   1 MTGGSGAIGRAVAPTLARVGFDVTVAYHRD---EAGAKAAAEAVREHGQRATIVQADIRDTEEAAALVEQAA-TLGP 73 
                                       59******************9999999999...456667789999**************************7.667* PP

                                       --EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHH CS
                                KR  82 ikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaf 155
                                       ++ v++ Ag+++ +++ee   +++ +vla  v+Ga n+ +   +   e+   +v +SS+a++ g+   ++Ya+a a 
  gi|300713035|ref|YP_003738847.1|  74 VAVVVNGAGAVNPGPVEEA-PDSIGNVLAVNVEGAINVTTPAIKllrENDGSVVNISSVAAVHGTV-DTTYATAKAG 148
                                       ****************986.789***************99777767566678999******99986.5789999886 PP

                                       HHHHHHHH CS
                                KR 156 lDalaeyr 163
                                       l ++ ++ 
  gi|300713035|ref|YP_003738847.1| 149 LLGFTRSL 156
                                       66666554 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.5   4.5e-10   4.7e-07       5      82 ..       4      86 ..       1      92 [. 0.85
   2 ?   -1.8   0.0       3.3   3.5e+03      75     101 ..     103     130 ..      97     149 .. 0.61

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.5e-10
                                      --SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...TTTCEEEEE--TTTHHHHHHHHHTTS......SEEE CS
                   Sacchrp_dh_NADP  5 GaGsvGqavaellarhfdvdaeitvadrskeklealaaka...lgvrfeaialdaenyeavLaallkeg......dlvv 74
                                      G+G++G+ava+ lar + +  ++tva   +e  +++aa+a   +g+r+++++ d+ + e+  aal++++       +vv
  gi|300713035|ref|YP_003738847.1|  4 GSGAIGRAVAPTLARVG-F--DVTVAYHRDEAGAKAAAEAvreHGQRATIVQADIRDTEE-AAALVEQAatlgpvAVVV 78
                                      67*************98.5..6999977777777777777799*****************.*******99999989999 PP

                                      E-SSGGGH CS
                   Sacchrp_dh_NADP 75 nlsppiss 82
                                      n ++ +  
  gi|300713035|ref|YP_003738847.1| 79 NGAGAVNP 86
                                      98887765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.3
                                       E-SSGG.GHHHHHHHHHHHT-EEEESS- CS
                   Sacchrp_dh_NADP  75 nlsppi.ssldvlkaCietgvhyvdtsi 101
                                       n+ + i  + + +k+ +e+  ++v++s 
  gi|300713035|ref|YP_003738847.1| 103 NVEGAInVTTPAIKLLRENDGSVVNISS 130
                                       5555555566677777777777777444 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.6   5.7e-10     6e-07       3     118 ..       1     134 [.       1     156 [. 0.75

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 5.7e-10
                                       EETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH...T-SEEE CS
                         Epimerase   3 VtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkee...qpdavi 69 
                                       +tG++G iG+a++  l++ g +v++  ++ +a+++a+ e +       ++v++d++d ++ ++l+++    +p av+
  gi|300713035|ref|YP_003738847.1|   1 MTGGSGAIGRAVAPTLARVGFDVTVAYHRDEAGAKAAAEAVrehgqraTIVQADIRDTEEAAALVEQAatlGPVAVV 77 
                                       69***************************9999999999999*****************777777665333555555 PP

                                       E-.-S...---HHHHHHSHHHHHHHHTHHHHHHHHHHHHH....TCTEEEEEEE.GGG CS
                         Epimerase  70 hl.Aa...vggvaassedpadfieknlqgtlnlleaarka....gvkrllflsS.sev 118
                                          A+    g v++  ++   ++  n++g+ n+   a k     +   ++++sS ++v
  gi|300713035|ref|YP_003738847.1|  78 VNgAGavnPGPVEEAPDSIGNVLAVNVEGAINVTTPAIKLlrenDG-SVVNISSvAAV 134
                                       4424432224456666777788999999999997655543221033.88888884445 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   1.2e-08   1.2e-05       3     140 ..       2     142 ..       1     149 [. 0.74

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.2e-08
                                       ETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH....T CS
                     GDP_Man_Dehyd   3 TGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev....q 75 
                                       TG++G iG  +a  L + g++v++  +r+++ + +  e++++    +  ++ +++++D++D+++   l++++     
  gi|300713035|ref|YP_003738847.1|   2 TGGSGAIGRAVAPTLARVGFDVTVAYHRDEAGAKAAAEAVRE----H-GQRATIVQADIRDTEEAAALVEQAatlgP 73 
                                       9******************************99999999874....3.5799**************99999844434 PP

                                       -SEEEE--S---HHHHTTSHH...HHHHHHTHHHHHHHH.HHHHCT..TTSEEEEEEEGGGG-S-SSSS CS
                     GDP_Man_Dehyd  76 pdevynLAAqshVdvsfekPe...ytaevnvlGtlrLLe.airalglekkvrfyqaStsEvYGkvqevp 140
                                       +  v+n A+    +   e P+    ++ vnv G++++   ai+ l  ++   + ++S + v G+v+ + 
  gi|300713035|ref|YP_003738847.1|  74 VAVVVNGAGAVNPGPVEEAPDsigNVLAVNVEGAINVTTpAIKLLRENDGSVVNISSVAAVHGTVDTTY 142
                                       577888888776555555554111556678889998876245544444444444555578888887665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   5.9   4.6e-08   4.9e-05       1      73 [.       3      85 ..       3     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.6e-08
                                      TTTSHHHHHHHHHHHHC-T-EEE.EEETT....HHHCHHHHCT.TTCEEEE--TT-CCHHHHHHTT-S.....EEEES- CS
                    NAD_binding_10  1 GAtGkvGrllvkellargghevt.alvRn....peklaeleae.eglevvegdvtdvedlaealkgad.....aVvsal 68
                                      G++G +Gr+++  l++ g ++vt a+ R+    ++ +++++++ +++++v++d+ d+e+ a+ +++a      aVv+++
  gi|300713035|ref|YP_003738847.1|  3 GGSGAIGRAVAPTLARVG-FDVTvAYHRDeagaKAAAEAVREHgQRATIVQADIRDTEEAAALVEQAAtlgpvAVVVNG 80
                                      9****************6.77751679994433334456777779*******************966433333677666 PP

                                      --TCC CS
                    NAD_binding_10 69 ggggk 73
                                      +g  +
  gi|300713035|ref|YP_003738847.1| 81 AGAVN 85
                                      55444 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.6   2.7e-07   0.00028       4     133 ..       2     135 ..       1     158 [. 0.75

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.7e-07
                                       ETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T.-S CS
                   Polysacc_synt_2   4 tGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelk.vd 79 
                                       tG++G+iG+++  ++++      + + rdE    + ++ ++e+ ++ ++ v+  + i d ++++ l +   +l+ v 
  gi|300713035|ref|YP_003738847.1|   2 TGGSGAIGRAVAPTLARVGFDVTVAYHRDEAGAKAAAEAVREHGQRATI-VQ--ADIRDTEEAAALVEQAATLGpVA 75 
                                       9***********************************9999887777655.33..44555544444444444444256 PP

                                       EEEE.------HHHHHH..SHHHHHHHHHHHHHHHHHHHHHT...T-SEEEEEEEGGGSS CS
                   Polysacc_synt_2  80 vvfh.aAAlKhVPlvee..npleaiktNvlgtenvieaaiea...gvkkvvliStDKAvn 133
                                       vv++ a A+   P+ e    + +++  Nv g+ nv + ai+    +  +vv iS+  Av+
  gi|300713035|ref|YP_003738847.1|  76 VVVNgAGAVNPGPVEEApdSIGNVLAVNVEGAINVTTPAIKLlreNDGSVVNISSVAAVH 135
                                       6666255777777776533677899************99975111445688888877776 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   7.1   9.3e-07   0.00098      60     261 ..       2     225 ..       1     229 [. 0.66

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.3e-07
                                       EEBSSHHHHHHHHHHHHHT-EEEEEEETTS-..HHHHHHHHHTT-EEEEECCHHHHHHHHHH...HHHHHSTTCEE- CS
                              PALP  60 eassGNhgralAaaaallGlkvtivvpadas..pekvallrllGaevvevggdydeavaaaa...elaaegegaylv 131
                                       +++sG  gra+A   a+ G++vt+  ++d    ++ +++ r++G + + v+ d  ++++aaa   ++a  g+ a++v
  gi|300713035|ref|YP_003738847.1|   2 TGGSGAIGRAVAPTLARVGFDVTVAYHRDEAgaKAAAEAVREHGQRATIVQADIRDTEEAAAlveQAATLGPVAVVV 78 
                                       6789**********************9999955577889*****999999889777777755331555556666666 PP

                                       -TTT..SHH...............HHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHH.......HST CS
                              PALP 132 sqfd..npt...............vieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglke.......rrp 183
                                       +  +  np                ++eg  + + + i+  l ++ d  vv +++ + ++G++    +       +++
  gi|300713035|ref|YP_003738847.1|  79 NGAGavNPGpveeapdsignvlavNVEGaINVTTPAIK--LLRENDGSVVNISSVAAVHGTVDTTYAtakagllGFT 153
                                       66666644444455556677778899998888888884..2245555555555555555555444442222222333 PP

                                       T..-EEEEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHH CS
                              PALP 184 d..vrvigvepegsdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarr 258
                                           r +g + ++++a+a +      v++p  dti d+l+ +   ++   +  +++ + ++ + ee+++a+r la++
  gi|300713035|ref|YP_003738847.1| 154 RslAREVGPDGVRVNAVAPGP-----VDTPMNDTITDSLEDR---RFRGHHTVDTLLDRYEATPEEVASAVRFLATH 222
                                       333555555555666665555.....6666669999999999...44444443444446778999999999999999 PP

                                       HSB CS
                              PALP 259 egi 261
                                       e+i
  gi|300713035|ref|YP_003738847.1| 223 EFI 225
                                       987 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.8   7.7e-07   0.00081       4      67 ..       2      70 ..       1      79 [. 0.89

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.7e-07
                                      SSTTSHHHHHHHHHHHHHT-EEE.EEES-S..-SHHHHHHHHST..TEEEES-TT-HHHHHHHHTT-SE CS
                              NmrA  4 iGaTGrqGksvvrallkaghkvr.alvRdt..kselakslkeaG..velvkgdlddkeslvealkgvdv 67
                                      +G++G++G++v+  l+++g++v  a  Rd+   + +a+++ e G  +++v++d+ d e  +++++++ +
  gi|300713035|ref|YP_003738847.1|  2 TGGSGAIGRAVAPTLARVGFDVTvAYHRDEagAKAAAEAVREHGqrATIVQADIRDTEEAAALVEQAAT 70
                                      79*******************87266788888889999***999667999***************9975 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   9.2e-06    0.0097       5      54 ..       4      59 ..       2      79 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.2e-06
                                      S-SHHHHHHHHHHHHHTHCEEEE-SC.....H.HHHHHHHHCEEEEETTCEEEEEE CS
                              ApbA  5 GaGaiGsllaakLakagadvtlilrs.....r.rlealkknGlrltseggeeilrp 54
                                      G+GaiG+ +a +La+ g dvt+  ++     +  +ea++++G r t+++ + +  +
  gi|300713035|ref|YP_003738847.1|  4 GSGAIGRAVAPTLARVGFDVTVAYHRdeagaKaAAEAVREHGQRATIVQADIRDTE 59
                                      9********************99877222223335667777777777773333222 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   5.7e-06     0.006       5      61 ..       4      65 ..       2      93 .. 0.70
   2 ?   -2.6   0.0       7.3   7.7e+03       5      31 ..     106     132 ..     102     170 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.7e-06
                                      --STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE.....-EEEE--S-HHHHHHHH CS
                            XdhC_C  5 Gaghvaqalarlaaalgfrvtvvdpreefatkerfpeade.....tavvvlthdhklDaeal 61
                                      G g +++a+a+ +a++gf+vtv+ +r+e+ +k+ +++++e     t+v +  +d +  a+++
  gi|300713035|ref|YP_003738847.1|  4 GSGAIGRAVAPTLARVGFDVTVAYHRDEAGAKAAAEAVREhgqraTIVQADIRDTEEAAALV 65
                                      899************************96655555544447855433333333333333333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.3
                                       --STTHHHHHHHHHHHTEEEEEEES-G CS
                            XdhC_C   5 Gaghvaqalarlaaalgfrvtvvdpre 31 
                                       Ga +v+ + ++l+++ + +v+ + + +
  gi|300713035|ref|YP_003738847.1| 106 GAINVTTPAIKLLRENDGSVVNISSVA 132
                                       666666666666666666665555444 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.0   1.4e-05     0.015       6      60 ..       4      63 ..       3      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
                                      TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC........-EEECECHHHHHH CS
                     F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg........vkvtavdneeaae 60
                                      G+G +g+a+a  l++ g    +++va +r++  a+++ae++         v++  +d+eeaa+
  gi|300713035|ref|YP_003738847.1|  4 GSGAIGRAVAPTLARVG---FDVTVAYHRDEAGAKAAAEAVRehgqratiVQADIRDTEEAAA 63
                                      99***************...********************99999888887777778888775 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.1   1.5e-05     0.015       6      68 ..       4      66 ..       3      84 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
                                      --SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEE CS
                           3HCDH_N  6 GaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalaris 68
                                      G+G +G+ +a  +a+ g++V++   ++ea +ka++++ ++  + +   +++  ++e+a+a ++
  gi|300713035|ref|YP_003738847.1|  4 GSGAIGRAVAPTLARVGFDVTVAYHRDEAGAKAAAEAVREHGQRATIVQADIRDTEEAAALVE 66
                                      99*******************988766666655555554444444444444444555544444 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   3.2   2.5e-05     0.026       5     113 ..       1     142 [.       1     148 [. 0.80
   2 ?   -0.0   0.0      0.36   3.8e+02       6      52 ..     144     192 ..     140     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
                                       EESTTSHHHHHHHHHCTTTSEEEEEE.-TT.....................T--TTSHHHHHHHHHHH--....SEE CS
                     RmlD_sub_bind   5 vtGanGqlGseLakqlaeeglevlal.tre.....................eldltdaeavaellkeakp....dvv 55 
                                       +tG++G++G+++a  la+ g++v+   +r+                     ++d++d e++a+l+++a      +vv
  gi|300713035|ref|YP_003738847.1|   1 MTGGSGAIGRAVAPTLARVGFDVTVAyHRDeagakaaaeavrehgqrativQADIRDTEEAAALVEQAATlgpvAVV 77 
                                       59*******************9986636669**********************************99874222269* PP

                                       EE------HHHHHHSHH...HHHHHHTHHHHHHHHHH....HHCT-EEEEEEEGGGS-S-TTS-B CS
                     RmlD_sub_bind  56 vnaAAytavDkaEseee...aayavnaeavealAeaa....aavgalLihvStDyVFdGekkrpY 113
                                       vn A   +   +E+ ++   +  avn+e++ ++   a    ++ +  ++ +S+     G+ ++ Y
  gi|300713035|ref|YP_003738847.1|  78 VNGAGAVNPGPVEEAPDsigNVLAVNVEGAINVTTPAikllRENDGSVVNISSVAAVHGTVDTTY 142
                                       ***9999999999988733357899****999987652222456677777777666666666666 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.36
                                       ESTTSHHH..HHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH-- CS
                     RmlD_sub_bind   6 tGanGqlG..seLakqlaeeglevlaltreeldltdaeavaellkeakp 52 
                                       t + G+lG  + La+++  +g+ v a+    +d   ++++++ l++ + 
  gi|300713035|ref|YP_003738847.1| 144 TAKAGLLGftRSLAREVGPDGVRVNAVAPGPVDTPMNDTITDSLEDRRF 192
                                       5567777744679999999999999999999999999999999998765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.7e-05     0.018      43     112 ..       4      68 ..       2      84 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
                                       S-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHH CS
                      2-Hacid_dh_C  43 GlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlinae 112
                                       G G+IG+ava +l+ +g++v++  ++ ++ ++++      + + e  +++ iv   +  t+e   l++++
  gi|300713035|ref|YP_003738847.1|   4 GSGAIGRAVAPTLARVGFDVTVAYHRDEAGAKAA-----AEAVREHGQRATIVQADIRDTEEAAALVEQA 68 
                                       89************99999887766645444333.....4466777777777777777777777776554 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   0.00011      0.11       3      43 ..       4      46 ..       3      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
                                      --SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE..TTC CS
                     NAD_binding_8  3 GaGlsGlvaAylLakagfdvlllekrdrlGGraasyev..pgv 43
                                      G+G+ G + A +La+ gfdv++  +rd  G +aa + v  +g+
  gi|300713035|ref|YP_003738847.1|  4 GSGAIGRAVAPTLARVGFDVTVAYHRDEAGAKAAAEAVreHGQ 46
                                      9*******************************99987744444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1792.57
//
Query:       gi|300713036|ref|YP_003738848.1|  [L=461]
Description: NAD-dependent aldehyde dehydrogenase-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-14   52.0   0.0    1.4e-13   50.2   0.0    1.8  2  Aldedh    Aldehyde dehydrogenase family
     0.0035   16.5   0.0     0.0051   15.9   0.0    1.2  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.13   1.2e+03      14      51 ..      20      58 ..       9      73 .. 0.79
   2 !   50.2   0.0   1.5e-17   1.4e-13     128     357 ..     156     376 ..     117     380 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.13
                                      TTTCEEEEEEE-B-HHHHHHHHHHHHH.HHHHHTTS-HH CS
                            Aldedh 14 PatgeviakvpaataedvdaavaaAke.afkawaklpae 51
                                       + ge++++v++    +v++av +A+e  f+a ++lp+ 
  gi|300713036|ref|YP_003738848.1| 20 AIGGEPLYEVARTPHVTVHDAVLTAREdGFDALQALPVG 58
                                      5578999999999999******99999889888888765 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 1.5e-17
                                       SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-T CS
                            Aldedh 128 GvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehp 204
                                        v g  +P N P++ a  +l  ala+   +vl+P+++ pl+a++la++++ ag+P+ +++v++g ++++g+++++++
  gi|300713036|ref|YP_003738848.1| 156 RVLGGMMPSNDPAVYAWPAL--ALAMKIPIVLRPSDRDPLTAIRLARALRGAGVPESAVHVLPG-DRSIGKTVCRET 229
                                       56777788888876655444..6888899***********************************.899*******87 PP

                                       TESEEEEES-HHHHHHHHHHHHCTTSEEEEEE.---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHH CS
                            Aldedh 205 evdkvsftGstevgrkiakaaaknlkrvtlEl.GGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqes 280
                                       + ++++f  + +vg    +         ++E+ G   ++ vl+    ++ ++++++g++++aG  C++ +r++   +
  gi|300713036|ref|YP_003738848.1| 230 D-HAIAFGTEDAVGSFRTE--------PSVETyGPGQSIAVLAREPTEQELDSLARGVLRSAGRACYCLTRIVATGE 297
                                       7.78999988888864333........33444155566779999999*****************************9 PP

                                       HHHH.HHHHHHHHHHT-...-BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSST.TEE- CS
                            Aldedh 281 iyde.fveklveaakkl...kvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekg.yfve 352
                                       +  + + ++l+ ++++l   + g+  de+ +v P   ++ +e+v++ + +   + ++  +    ++  +++g + ++
  gi|300713036|ref|YP_003738848.1| 298 CNGDvLAKRLARRVTELsgpTYGSLIDEQATV-PGFAPDTAEQVTNAIRRIPGQDVTAAYCE--QHLVERDGiARLR 371
                                       88773678899999999666789999999999.99**************9999999888844..4666777778899 PP

                                       -EEEE CS
                            Aldedh 353 Ptvla 357
                                       Ptv+ 
  gi|300713036|ref|YP_003738848.1| 372 PTVFR 376
                                       99986 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.7e-07    0.0051      96     238 ..     161     287 ..     132     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.7e-07
                              LuxC  96 vlsgNvpllpvmsilqglLvknvnllkvSssdpflaaallksladvdenhtladslsvvyfksgdtkleeeivqnaD 172
                                       ++++N p +  +  l +l +k  ++l++S  dp +a++l++ l           ++ v+    gd ++ ++++ + D
  gi|300713036|ref|YP_003738848.1| 161 MMPSNDPAVYAWPAL-ALAMKIPIVLRPSDRDPLTAIRLARALRGAGVP---ESAVHVL---PGDRSIGKTVCRETD 230
                                       799999999999876.7888999********************998875...5677777...89************* PP

                              LuxC 173 vvvawGgeeaikaiseklkpgkqlikfGakvSfavvdkealeeealdkaaeraAkDiivfdQqACl 238
                                         +a+G e+a+ + +     +  +  +G+  S+av+ +e       ++ ++ +A  + +   +AC 
  gi|300713036|ref|YP_003738848.1| 231 HAIAFGTEDAVGSFRT----EPSVETYGPGQSIAVLAREP-----TEQELDSLARGVLRSAGRACY 287
                                       **********987654....4445579*********9999.....666666777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3201.49
//
Query:       gi|300713037|ref|YP_003738849.1|  [L=362]
Description: hypothetical protein HacjB3_18593 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.031   12.9   0.0        3.3    6.2   0.0    2.0  2  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0   0.00018       3.3     167     192 ..      94     118 ..      91     151 .. 0.71
   2 ?    5.0   0.0   0.00042       7.6     281     367 ..     220     310 ..     159     346 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00018
                                       E--SSSS-EEEEEEHHHHHHHHHHHH CS
                       AMP-binding 167 TSGTTGkPKGVmlshrnlvanvaslk 192
                                       T+GTTG PK V ++ +++ +++++++
  gi|300713037|ref|YP_003738849.1|  94 TGGTTGAPKRVLMR-DYWRQQARWMA 118
                                       99*********986.45555555554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.00042
                                       CGTT-SEEEEESS-EBHHHHHHHHHHHTC..EEEEEEEEGGGSSEC....EECHCTTTCTSTTS-BEE-TTEEEEEE CS
                       AMP-binding 281 dlsslrlvllggeplspellrffralfge..evlegYGlTEttgvv....tvlpleedkkklgsvGkplpgvevkiv 351
                                         s++  ++ gg +l +++ r fr++     +++  YG T ++++     t +  +ed+ +   + +  p    +iv
  gi|300713037|ref|YP_003738849.1| 220 ANSGIDGIIHGGTSLDRDTYRVFREKWYAdqTLVGEYGNTLMGVAPevppT-ISAPEDRGYHLDYVPCYPQFVPEIV 295
                                       3344777888***************99989989999**9988887765553.333333233333556679999**** PP

                                       -TTTSCBEETTSEEEE CS
                       AMP-binding 352 DeetgepvpdgeeGel 367
                                       D++ g++v  ge G +
  gi|300713037|ref|YP_003738849.1| 296 DDD-GGLVDYGERGTV 310
                                       **9.99******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2719.89
//
Query:       gi|300713038|ref|YP_003738850.1|  [L=479]
Description: Na+/solute symporter [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-40  138.8  26.4    2.7e-40  138.5  26.4    1.1  1  SSF          Sodium:solute symporter family
     0.0097   16.0   2.6     0.0097   16.0   2.6    4.4  4  Cyt_c_ox_IV  Cytochrome c oxidase subunit IV


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5  26.4     3e-44   2.7e-40       1     406 []      34     427 ..      34     427 .. 0.81

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 3e-44
                               SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvl.lelgalllvllll..lllaerlrnagalTlpdy 74 
                                       yflag  l+ +v  l+++a+ +sa  f+G aG +++ G+a+++ l + al ++ l+l  l +  + r+ g lT  +y
  gi|300713038|ref|YP_003738850.1|  34 YFLAGNTLGVVVFPLTMFATLMSAFIFLGSAGWGYQHGMAWFAlLGVEALAGIPLALvgLKVWRIGRQRGYLTPTEY 110
                                       9****************************************86256777877766541045556666********** PP

                               SSF  75 lskRfkgkrilvylsalslllvitlklsvdlvggaklielal..GlnyetavlllaaltalYtviGGllAvvytdti 149
                                       +   +++    ++l   + ++  + +ls + +gg+ l+e++    + ++++ +ll ++t++Y  +GGl++v + d++
  gi|300713038|ref|YP_003738850.1| 111 VGDAYDSTT-VKLLILGVQFVWAIPYLSIQAMGGGLLFETITegAITFTQGAILLTLVTTIYLGLGGLRSVAWSDVL 186
                                       *********.888888899********************997546999***************************** PP

                               SSF 150 qav...lmlvgalilliivllevGgleslveklkeaapkv.vdlltpdslkllrdpltalslwlglvlGvaglphil 222
                                       q++   ++lv+a++ l+ +l  +G    l e+  + +p++   ++tp+            s+ l   + ++  p + 
  gi|300713038|ref|YP_003738850.1| 187 QGIamvVLLVAAFLYLFPTLEPAGTTAMLAETSNHLEPSGdLGFFTPGV---------WVSFLLMNTMAIIAYPQMF 254
                                       *962225566777777777777777777777777777755445555555.........455555566677888**** PP

                               SSF 223 vRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllpnllaGllla 299
                                       +Rflaa+ ++ + +++l+  +v+++v ++ + +      l g+ + +  + +  ++ ++p L  +  p +++G+++ 
  gi|300713038|ref|YP_003738850.1| 255 QRFLAAD-GERAFRSLLIWWPVMVIVAAL-VPV------LLGVWGVVTMPGLDSPDTILPALLAEYTPVWIFGIIMG 323
                                       *****96.56678999*999999999998.444......556666677799************************** PP

                               SSF 300 vmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafag 376
                                        +lAa+mst +sl+l  ss++++DlY + +  a a+++++ +v+r++  v   +  l+++ ++q  +++l  + ++g
  gi|300713038|ref|YP_003738850.1| 324 GALAAMMSTADSLVLTLSSLVSHDLYRAHLAPA-ASDRRETWVGRLTA-VGLLIGGLALALPQQGTIIDLAIYFIQG 398
                                       **************************9887777.67777777777654.2333333334445555588887766665 PP

                               SSF 377 lasavlavillalfwkrvneqGAlagliiG 406
                                        ++  l+  +  l+w+rv++ GA+a++++G
  gi|300713038|ref|YP_003738850.1| 399 -NALLLPAYIAPLYWSRVTATGAIASVVLG 427
                                       .67888999999**************9988 PP

>> Cyt_c_ox_IV  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.6      0.66     6e+03      21      33 ..      11      23 ..       2      67 .. 0.61
   2 !   16.0   2.6   1.1e-06    0.0097       7     109 ..     156     260 ..     150     270 .. 0.78
   3 ?    1.4   1.4     0.035   3.2e+02      74     104 ..     261     288 ..     258     298 .. 0.69
   4 ?   -1.6   0.1       0.3   2.7e+03      80     108 ..     299     327 ..     291     344 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.66
                       Cyt_c_ox_IV 21 vYgvltkieelvG 33
                                      vY ++t +  ++G
  gi|300713038|ref|YP_003738850.1| 11 VYLLVTLTIGWAG 23
                                      3333333333333 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.1e-06
                       Cyt_c_ox_IV   7 lflllavffllvavvYgvltkieelvGttalvltgglallv..gtylafvarridarpedredaeiadgaGelGffs 81 
                                       +f+  a++++lv+++Y  l  ++ ++    l   ++++llv  ++yl  +    ++ +   e+++  + +G+lGff+
  gi|300713038|ref|YP_003738850.1| 156 TFTQGAILLTLVTTIYLGLGGLRSVAWSDVLQGIAMVVLLVaaFLYLFPTLEPAGTTAMLAETSNHLEPSGDLGFFT 232
                                       6888899999999999999887755555444444444444400567777888889999999999999********** PP

                       Cyt_c_ox_IV  82 PhSwwPlvlalaaalaalglalgwWlll 109
                                       P  w  ++l  ++a++a   +++ +l++
  gi|300713038|ref|YP_003738850.1| 233 PGVWVSFLLMNTMAIIAYPQMFQRFLAA 260
                                       ****************999988877765 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.035
                       Cyt_c_ox_IV  74 aGelGffsPhSwwPlvlalaaalaalglalg 104
                                       +Ge  f s   wwP+++ +aa +    + lg
  gi|300713038|ref|YP_003738850.1| 261 DGERAFRSLLIWWPVMVIVAALVP---VLLG 288
                                       57888888889***9987765432...3333 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.3
                       Cyt_c_ox_IV  80 fsPhSwwPlvlalaaalaalglalgwWll 108
                                        sP  + P +la  + + ++g+++g  l+
  gi|300713038|ref|YP_003738850.1| 299 DSPDTILPALLAEYTPVWIFGIIMGGALA 327
                                       57778888888888888888887754443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3866.29
//
Query:       gi|300713039|ref|YP_003738851.1|  [L=74]
Description: hypothetical protein HacjB3_18603 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.031   13.9   3.3      0.034   13.8   3.3    1.1  1  DUF4131          Domain of unknown function (DUF4131)
       0.63   10.1   8.5       0.78    9.8   8.5    1.1  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
       0.86    9.6  17.5        1.8    8.5  17.4    1.6  1  DUF3311          Protein of unknown function (DUF3311)
        1.1    7.1   5.4        1.2    6.9   5.4    1.0  1  DUF4175          Domain of unknown function (DUF4175)
          3    6.5   4.1        3.4    6.3   4.1    1.0  1  DUF2207          Predicted membrane protein (DUF2207)
        5.2    7.6   8.7        7.4    7.1   8.7    1.3  1  DUF202           Domain of unknown function (DUF202)
        7.5    6.6  12.6         22    5.2  12.6    1.6  1  DUF997           Protein of unknown function (DUF997)


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.3   1.3e-05     0.034       6      53 ..      10      67 ..       6      74 .] 0.65

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
                           DUF4131  6 alvllalllllllllllllrr..........rprrrvllllllllllallgfalrapq 53
                                       ++l+++l++l+ l+++l  +          + +  +++++++++++a++ + ++ ++
  gi|300713039|ref|YP_003738851.1| 10 LWWLFGILFVLMSLAVWLPVEpivwglplwaAATLLFMITAAFIAAIAGVRYEWPLRR 67
                                      59****************9999988877744444444444444444444444444444 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.5    0.0003      0.78      46      88 ..      11      59 ..       8      69 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
                   Phage_holin_3_6 46 lallalllllvalalalaa........lwlaalivaavllvlagvlalvgl 88
                                        l+++l++l+ la++l +        lw+aa+++  +++ +a ++a++g+
  gi|300713039|ref|YP_003738851.1| 11 WWLFGILFVLMSLAVWLPVepivwglpLWAAATLL--FMITAAFIAAIAGV 59
                                      56888888888888777312344565677777775..44444444444444 PP

>> DUF3311  Protein of unknown function (DUF3311)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  17.4   0.00072       1.8       1      50 [.      11      59 ..      11      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00072
                           DUF3311  1 vlllvpvlvalllvpfynrvdpvllGlPffywwqllwvllasvvtwlayr 50
                                      ++l  +++v + l +++  v+p+++GlP++ + +ll ++ a+++ ++a  
  gi|300713039|ref|YP_003738851.1| 11 WWLFGILFVLMSLAVWL-PVEPIVWGLPLWAAATLLFMITAAFIAAIAGV 59
                                      66777766666666666.6*************************999975 PP

>> DUF4175  Domain of unknown function (DUF4175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.4   0.00048       1.2       7      62 ..      10      67 ..       7      72 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00048
                           DUF4175  7 lwpllsvlalfl.alsllglwq...llpdllrlalllafalallaalvlplrrfrwPtra 62
                                      lw+l+ +l++ + ++++l + +    lp ++ + ll+++ +a++aa++   +r++wP r+
  gi|300713039|ref|YP_003738851.1| 10 LWWLFGILFVLMsLAVWLPVEPivwGLPLWAAATLLFMITAAFIAAIA--GVRYEWPLRR 67
                                      66666666554414567765441117999*999999999999999999..6799999886 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.1    0.0013       3.4     387     436 ..      11      59 ..       4      69 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0013
                           DUF2207 387 glgliilglilillallllvlllvfllilllillliaiivlllfsrllgr 436
                                       +++++il+++++l++ +l v  +v+ l l  +  l+++i +++++++ g 
  gi|300713039|ref|YP_003738851.1|  11 WWLFGILFVLMSLAV-WLPVEPIVWGLPLWAAATLLFMITAAFIAAIAGV 59 
                                       333333333333333.3333336666666666666666666666565554 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.7    0.0029       7.4      13      64 ..      11      63 ..       8      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0029
                            DUF202 13 WlRtslalialglallrffltgepsalg....kilglilivlgiltllvglvrylr 64
                                      W  ++++++ ++la++    + ep  +g    +++ l+++++++++++++ vry +
  gi|300713039|ref|YP_003738851.1| 11 WWLFGILFVLMSLAVWL---PVEPIVWGlplwAAATLLFMITAAFIAAIAGVRYEW 63
                                      55589999********7...777777764432444677****************87 PP

>> DUF997  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  12.6    0.0085        22      12      65 ..      13      61 ..       8      64 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0085
                            DUF997 12 ltllyflwwllfaYglgskeveeyyilglPlWfflscillpilfivlvillvkf 65
                                      l  ++f+++ l+ +++  ++     ++glPlW     ++++  +++++i+ v++
  gi|300713039|ref|YP_003738851.1| 13 LFGILFVLMSLAVWLPV-EP----IVWGLPLWAAATLLFMITAAFIAAIAGVRY 61
                                      44456666666666666.44....8*********************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 541.47
//
Query:       gi|300713040|ref|YP_003738852.1|  [L=268]
Description: IS1341-type transposase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-23   82.4   0.1      3e-23   81.5   0.1    1.4  1  OrfB_Zn_ribbon   Putative transposase DNA-binding domain
    3.9e-10   40.0   0.1    5.8e-10   39.4   0.1    1.2  1  OrfB_IS605       Probable transposase
     0.0058   16.5   0.2       0.15   12.0   0.0    2.3  2  zinc_ribbon_4    zinc-ribbon domain
  ------ inclusion threshold ------
      0.041   13.9   2.1      0.081   12.9   2.1    1.5  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
      0.048   13.8   0.7        0.1   12.7   0.7    1.5  1  Ribosomal_L37ae  Ribosomal L37ae protein family
       0.12   12.4   0.1       0.21   11.6   0.1    1.5  1  HypA             Hydrogenase/urease nickel incorporation, met
       0.13   11.9   2.1        3.6    7.2   0.2    2.5  2  zf_UBZ           Ubiquitin-Binding Zinc Finger
       0.39   10.8   2.5        1.1    9.4   2.5    1.7  1  Zn_Tnp_IS91      Transposase zinc-binding domain
       0.62    9.6   2.8        5.7    6.5   0.3    2.3  2  zf-ribbon_3      zinc-ribbon domain
        3.1    7.6   9.0          5    6.9   1.3    2.4  2  Rubredoxin_2     Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.1   1.6e-26     3e-23       1      67 [.     143     210 ..     143     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1.6e-26
                    OrfB_Zn_ribbon   1 frklkeqleykakeyGikveevnpayTSktCseCgsknke.alsgrtfkCpnCgfeadrDvnAaiNil 67 
                                       fr+l+e+le+ka eyGi+ve + pa+TS+tCs+Cg+++++ + s+ +f C++Cg e+d D+nAa Ni 
  gi|300713040|ref|YP_003738852.1| 143 FRELQEMLEWKAAEYGISVEPIPPAFTSQTCSRCGHQSSTnRGSDGWFSCNECGQEYDGDYNAAKNIG 210
                                       89**************************************999***********************95 PP

>> OrfB_IS605  Probable transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   3.2e-13   5.8e-10      10     118 ..      23     122 ..      15     124 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 3.2e-13
                        OrfB_IS605  10 lpkpkgnkaagiDlGinnLatvvtedgtwflykgrrlksdykylakeiaelqsklkksknykkasrklarlhrkrsr 86 
                                        ++ +gn++ g+Dl+++n a+++t+     +++g +l   +  + + ++ lq k  +s     a++ larl+ + +r
  gi|300713040|ref|YP_003738852.1|  23 VEQREGNRVMGVDLNLKNVAVTSTGA----FFDGGELLWGQNHYFRVRRSLQAKGTRS-----ATQALARLSGRENR 90 
                                       57899*********************....6666666666666666778899985555.....8************* PP

                        OrfB_IS605  87 rrkhllhklathliktlkevgvetLnvgnmkd 118
                                       ++++ lh ++++l+++ ++   + + v+ ++ 
  gi|300713040|ref|YP_003738852.1|  91 FVLDRLHTISRRLVEEADAHDCSYIAVERLTH 122
                                       ******************99999999988876 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   8.4e-05      0.15      10      33 ..     155     178 ..     154     179 .. 0.94
   2 ?    2.2   0.1     0.095   1.7e+02       4      12 ..     191     199 ..     189     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.4e-05
                     zinc_ribbon_4  10 akyeiddeklpakgvkvrCskCgh 33 
                                       a+y i+ e +p++ ++ +Cs+Cgh
  gi|300713040|ref|YP_003738852.1| 155 AEYGISVEPIPPAFTSQTCSRCGH 178
                                       79*********************9 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.095
                     zinc_ribbon_4   4 tCpsCkaky 12 
                                       +C +C+ +y
  gi|300713040|ref|YP_003738852.1| 191 SCNECGQEY 199
                                       899**9999 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.1   4.5e-05     0.081      19      45 ..     171     197 ..     165     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.5e-05
                     Zn_Tnp_IS1595  19 fvCPhCgsr.kayriktrglfqCkeCrk 45 
                                       ++C +Cg++ +  r ++ g f C+eC+ 
  gi|300713040|ref|YP_003738852.1| 171 QTCSRCGHQsSTNRGSD-GWFSCNECGQ 197
                                       78*****9977777776.********86 PP

>> Ribosomal_L37ae  Ribosomal L37ae protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   5.6e-05       0.1      33      63 ..     170     201 ..     167     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.6e-05
                                       -BEESSSSSS.EEEEEETTEEEETTTTEEEE- CS
                   Ribosomal_L37ae  33 kytCpfcgkt.kvkRkavgiwkCkkcgktvaG 63 
                                       ++tC++cg++ + +R + g ++C++cg+++ G
  gi|300713040|ref|YP_003738852.1| 170 SQTCSRCGHQsSTNRGSDGWFSCNECGQEYDG 201
                                       579******9899***************9987 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00012      0.21      70      95 ..     170     198 ..      99     215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                                       EEEETTTS-EEECHH..H.HHS-TTTSSS CS
                              HypA  70 kvrCreCgkefelee..k.alrCpkCgsa 95 
                                       + +C++Cg++ ++++  +  ++C++Cg++
  gi|300713040|ref|YP_003738852.1| 170 SQTCSRCGHQSSTNRgsDgWFSCNECGQE 198
                                       457*******99887644677*****986 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.2     0.002       3.6       2      13 ..     170     181 ..     169     184 .. 0.82
   2 ?    4.0   0.1     0.022        39       2      11 ..     189     198 ..     188     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.002
                            zf_UBZ   2 tylCerCgkeip 13 
                                       +++C+rCg++ +
  gi|300713040|ref|YP_003738852.1| 170 SQTCSRCGHQSS 181
                                       689*****9865 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.022
                            zf_UBZ   2 tylCerCgke 11 
                                        + C +Cg+e
  gi|300713040|ref|YP_003738852.1| 189 WFSCNECGQE 198
                                       589*****98 PP

>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.5    0.0006       1.1      15      70 ..     137     202 ..     122     217 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0006
                       Zn_Tnp_IS91  15 klrpsqrkavekilrCrtaalGfary.........eCeeCghekivyfsCksrh.CpsCqkkatee 70 
                                       +++++  ++++++l+ + a++G ++           C+ Cgh+          + C++C++++  +
  gi|300713040|ref|YP_003738852.1| 137 QMHNWAFRELQEMLEWKAAEYGISVEpippaftsqTCSRCGHQSSTNRGSDGWFsCNECGQEYDGD 202
                                       555666666666666666666644333333333328*******999999999999******99755 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.3    0.0032       5.7       4      14 ..     172     181 ..     170     184 .. 0.79
   2 ?    2.9   0.1     0.042        74       4      10 ..     191     197 ..     187     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0032
                       zf-ribbon_3   4 rCPnCGaplss 14 
                                       +C++CG++ ss
  gi|300713040|ref|YP_003738852.1| 172 TCSRCGHQ-SS 181
                                       8******7.55 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.042
                       zf-ribbon_3   4 rCPnCGa 10 
                                       +C++CG+
  gi|300713040|ref|YP_003738852.1| 191 SCNECGQ 197
                                       6999997 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.3    0.0028         5       3      15 ..     173     185 ..     172     186 .. 0.85
   2 ?    4.8   1.2     0.013        24       1      10 [.     190     199 ..     190     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0028
                      Rubredoxin_2   3 CsqCGfesakwfG 15 
                                       Cs+CG++s++  G
  gi|300713040|ref|YP_003738852.1| 173 CSRCGHQSSTNRG 185
                                       ********98666 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.013
                      Rubredoxin_2   1 YvCsqCGfes 10 
                                       ++C++CG e+
  gi|300713040|ref|YP_003738852.1| 190 FSCNECGQEY 199
                                       89*****875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1955.33
//
Query:       gi|300713041|ref|YP_003738853.1|  [L=255]
Description: transcriptional regulator, IclR family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-28   99.6   0.0    2.2e-28   98.7   0.0    1.4  1  IclR            Bacterial transcriptional regulator
    3.2e-11   42.9   0.2    3.9e-10   39.4   0.0    2.5  3  HTH_IclR        IclR helix-turn-helix domain
    1.2e-06   27.9   0.1      5e-06   26.0   0.0    2.1  3  HTH_24          Winged helix-turn-helix DNA-binding
    4.6e-06   26.4   0.0    1.1e-05   25.2   0.0    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
    0.00013   21.6   0.0    0.00033   20.4   0.0    1.6  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    0.00019   21.2   0.0     0.0011   18.8   0.0    2.1  2  MarR_2          MarR family
    0.00023   21.1   0.0    0.00076   19.4   0.0    2.0  1  HTH_11          HTH domain
    0.00088   19.4   0.0     0.0021   18.2   0.0    1.6  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0015   18.6   0.0     0.0049   16.9   0.0    1.8  2  HTH_20          Helix-turn-helix domain
     0.0035   17.5   0.0      0.007   16.5   0.0    1.4  1  B-block_TFIIIC  B-block binding subunit of TFIIIC
     0.0068   16.3   0.0      0.016   15.1   0.0    1.6  1  MarR            MarR family
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.027   14.0   0.0    1.6  1  GerE            Bacterial regulatory proteins, luxR family
      0.013   15.2   0.0      0.028   14.2   0.0    1.5  1  LexA_DNA_bind   LexA DNA binding domain
      0.017   15.0   0.0       0.04   13.8   0.0    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.023   14.8   0.0      0.046   13.8   0.0    1.5  1  SpoIIID         Stage III sporulation protein D
      0.024   14.5   0.0      0.067   13.0   0.0    1.8  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.024   15.0   0.0      0.099   13.0   0.0    2.0  2  Rrf2            Transcriptional regulator
      0.055   13.9   0.1       0.26   11.7   0.0    2.2  2  HTH_40          Helix-turn-helix domain
      0.075   13.2   0.0       0.16   12.2   0.0    1.5  1  HTH_34          Winged helix DNA-binding domain
       0.12   12.2   0.7         36    4.3   0.2    3.1  3  LacI            Bacterial regulatory proteins, lacI family
       0.17   12.0   0.0       0.31   11.2   0.0    1.3  1  HTH_9           RNA polymerase III subunit RPC82 helix-turn-h


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   2.5e-31   2.2e-28       6     120 ..     127     242 ..     124     253 .. 0.90

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 2.5e-31
                                       TTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEE CS
                              IclR   6 vsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrci 82 
                                       ++++G+   l+++a GKa+La+l+ee++++++   +l + te+Titd+++L +eL+++Re+G+a +++E+ +g++++
  gi|300713041|ref|YP_003738853.1| 127 NTSLGKPRYLHICASGKAILAHLPEERRTEIIDHWGLPQQTENTITDEKTLASELETIREDGIATNNGETVAGLIAV 203
                                       5689************************************************************************* PP

                                       EEEEE-TTSSEEEEEEEEEETTTSHHHHHHH.HHHHHHH CS
                              IclR  83 AapifdasgevvaAvsvsgptarlteeelke.ellalvr 120
                                       +api     +v++A+s+sgp+ r+  +++ + e+  ++ 
  gi|300713041|ref|YP_003738853.1| 204 GAPILSVDDQVIGAISISGPAHRIATDGEVNeEYRDKLL 242
                                       ***********************9877665535555555 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   4.5e-13   3.9e-10       1      48 [.      11      57 ..      11      58 .. 0.98
   2 ?   -2.6   0.0       5.9     5e+03      19      26 ..      89      96 ..      72      99 .. 0.46
   3 ?    0.4   0.0      0.67   5.7e+02      11      32 ..     145     165 ..     144     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 4.5e-13
                                      HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                          HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                                      sl+R ++iL+++ + +   ++ elA++++ ++Stvh +L tL++lGy+
  gi|300713041|ref|YP_003738853.1| 11 SLERSFSILEYIVTNGAK-GVNELAEELDYSPSTVHAHLTTLHQLGYL 57
                                      89***************9.9***************************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.9
                                      -BHHHHHH CS
                          HTH_IclR 19 ltlselAr 26
                                       +++ lA+
  gi|300713041|ref|YP_003738853.1| 89 TNVRRLAE 96
                                      34444555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.67
                                       T-CTTBSS-BHHHHHHHHTS-H CS
                          HTH_IclR  11 alaeapqeltlselArrtglpk 32 
                                       +la+ p+e + +e+ ++ glp 
  gi|300713041|ref|YP_003738853.1| 145 ILAHLPEE-RRTEIIDHWGLPQ 165
                                       57777777.889*******995 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   5.9e-09     5e-06       5      47 ..      15      57 ..      12      58 .. 0.94
   2 ?   -2.7   0.0       5.4   4.6e+03      20      28 ..      91      99 ..      88     107 .. 0.70
   3 ?   -2.7   0.0       5.3   4.5e+03       9      20 ..     181     192 ..     181     193 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 5.9e-09
                            HTH_24  5 drkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                                       + ILe++  n+    +eLAe+l+ Spstv+++l  L + G++
  gi|300713041|ref|YP_003738853.1| 15 SFSILEYIVTNGAKGVNELAEELDYSPSTVHAHLTTLHQLGYL 57
                                      689**************************************96 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.4
                            HTH_24 20 qreLAerlg 28
                                       r LAe+++
  gi|300713041|ref|YP_003738853.1| 91 VRRLAEETN 99
                                      456666654 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.3
                            HTH_24   9 LelLqknprisq 20 
                                       Le++++++  ++
  gi|300713041|ref|YP_003738853.1| 181 LETIREDGIATN 192
                                       889999998887 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.3e-08   1.1e-05      14      45 ..      26      57 ..      17      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.3e-08
                                      SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                             HTH_5 14 gelcvcelaeelglsqstvShHLkkLreaGLV 45
                                      g + v elaeel+ s+stv  HL  L+++G++
  gi|300713041|ref|YP_003738853.1| 26 GAKGVNELAEELDYSPSTVHAHLTTLHQLGYL 57
                                      77889*************************96 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.8e-07   0.00033       3      51 ..      16      64 ..      14      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.8e-07
                          HTH_DeoR  3 eqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGa 51
                                        ile++   g   v+el+e+l++S+ T+   L++L++ g l+ + G +
  gi|300713041|ref|YP_003738853.1| 16 FSILEYIVTNGAKGVNELAEELDYSPSTVHAHLTTLHQLGYLIMVDGKY 64
                                      579************************************9998777665 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.3e-06    0.0011       9      56 ..      17      62 ..      14      66 .. 0.83
   2 ?   -1.1   0.0       2.1   1.8e+03      23      37 ..     153     167 ..     144     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.3e-06
                                      HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
                            MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                                       +L ++  ++ +   v+ela++l++s+s+v+ +l  L + G++  ++g
  gi|300713041|ref|YP_003738853.1| 17 SILEYIVTNGAK--GVNELAEELDYSPSTVHAHLTTLHQLGYLIMVDG 62
                                      567777777753..69**************************987766 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.1
                                       EHHHHHHHHTSSHHH CS
                            MarR_2  23 tvgelarrlglsksa 37 
                                       + +e+ +++gl++++
  gi|300713041|ref|YP_003738853.1| 153 RRTEIIDHWGLPQQT 167
                                       668999*****9997 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   8.9e-07   0.00076      17      47 ..      29      59 ..       7      64 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.9e-07
                            HTH_11 17 sgeeLAeeLnvSrrtvrrdIkaLeelgvpIe 47
                                        +eLAeeL+ S +tv+ ++ +L  lg+ I 
  gi|300713041|ref|YP_003738853.1| 29 GVNELAEELDYSPSTVHAHLTTLHQLGYLIM 59
                                      578************************9886 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.5e-06    0.0021      24      54 ..      29      59 ..      18      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.5e-06
                                      -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                    Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLekdGyvey 54
                                      ++ +lae+L+ sps+V   l  L++ Gy++ 
  gi|300713041|ref|YP_003738853.1| 29 GVNELAEELDYSPSTVHAHLTTLHQLGYLIM 59
                                      6789************************986 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.7e-06    0.0049      15      54 ..      18      57 ..      14      63 .. 0.83
   2 ?   -2.1   0.0       4.9   4.2e+03      14      24 ..     144     153 ..     143     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.7e-06
                                      HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTE CS
                            HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLeeagLv 54
                                      il ++ ++++  ++elae+ld s++t++ HL +L + g++
  gi|300713041|ref|YP_003738853.1| 18 ILEYIVTNGAKGVNELAEELDYSPSTVHAHLTTLHQLGYL 57
                                      66666677777789********************998875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.9
                                       HHHHHHSTCTT CS
                            HTH_20  14 rilraLaraeg 24 
                                       +il++L ++e 
  gi|300713041|ref|YP_003738853.1| 144 AILAHL-PEER 153
                                       689999.4444 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.2e-06     0.007       4      50 ..      15      59 ..      13      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.2e-06
                    B-block_TFIIIC  4 qfklLelIassRysGitqsdLakeskqdprslfyrlksLekkgLIvk 50
                                      +f +Le+I+  + +G+  ++La e++ +p+ ++ +l +L + g+  +
  gi|300713041|ref|YP_003738853.1| 15 SFSILEYIVTNGAKGV--NELAEELDYSPSTVHAHLTTLHQLGYLIM 59
                                      699************9..58***********************9876 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.9e-05     0.016       5      47 ..      15      57 ..      13      58 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
                                      HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
                              MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                                       f+iL+ + ++g+  v eLa+ l  s+stv   l++L + G++
  gi|300713041|ref|YP_003738853.1| 15 SFSILEYIVTNGAKGVNELAEELDYSPSTVHAHLTTLHQLGYL 57
                                      79***********************************999985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.2e-05     0.027       9      41 ..      17      51 ..      13      53 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
                                      HHHHHHCT.T.S-HHHHHHHHTS-HHHHHHHHHHH CS
                              GerE  9 evLrllae.G.ksnkeIAeelniSekTVkvhksni 41
                                      ++L+++++ G k ++e Aeel+ S+ TV++h++ +
  gi|300713041|ref|YP_003738853.1| 17 SILEYIVTnGaKGVNELAEELDYSPSTVHAHLTTL 51
                                      56666654244789*****************9876 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.3e-05     0.028      28      62 ..      30      63 ..      17      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.3e-05
                                      HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG- CS
                     LexA_DNA_bind 28 ireiaralglkSpsaveehLkaLerKGyierdpgk 62
                                      + e+a++l  + ps+v+ hL +L++ Gy+ + +gk
  gi|300713041|ref|YP_003738853.1| 30 VNELAEELDYS-PSTVHAHLTTLHQLGYLIMVDGK 63
                                      67899999975.*****************999997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.7e-05      0.04      13      58 ..      18      63 ..      13      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.7e-05
                                      HCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
                              TrmB 13 vYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                                      +  +++++g + ++e+aeel+ + s+v   L  L + G+   ++g+
  gi|300713041|ref|YP_003738853.1| 18 ILEYIVTNGAKGVNELAEELDYSPSTVHAHLTTLHQLGYLIMVDGK 63
                                      66789*********************************99888887 PP

>> SpoIIID  Stage III sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.4e-05     0.046       6      42 ..      13      50 ..       7      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.4e-05
                           SpoIIID  6 eRvleiakyiveska.tvRkaakvfgvskstvhkDvte 42
                                      eR  +i +yiv + a  v + a++++ s stvh  +t 
  gi|300713041|ref|YP_003738853.1| 13 ERSFSILEYIVTNGAkGVNELAEELDYSPSTVHAHLTT 50
                                      8999*******997637*****************9985 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.8e-05     0.067       8      36 ..      18      46 ..      16      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.8e-05
                     HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestvlr 36
                                      ILe +  ++   + eLAe++  S+stv++
  gi|300713041|ref|YP_003738853.1| 18 ILEYIVTNGAKGVNELAEELDYSPSTVHA 46
                                      99999**********************97 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00012     0.099       8      61 ..      13      63 ..       7      69 .. 0.85
   2 ?   -1.9   0.0       5.2   4.5e+03      29      48 ..     225     244 ..     223     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00012
                                      HHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
                              Rrf2  8 eyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGk 61
                                      e ++ +l y+ ++  ++   ++e+ae+ + sps +   l++L + g++  v Gk
  gi|300713041|ref|YP_003738853.1| 13 ERSFSILEYIVTNGAKG---VNELAEELDYSPSTVHAHLTTLHQLGYLIMVDGK 63
                                      56667777787777766...9***************************999998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.2
                                       HHHHHHHTS-HHHHHHHHHH CS
                              Rrf2  29 eeiaerqnispsylekilak 48 
                                       + ia+  +++++y  k+l  
  gi|300713041|ref|YP_003738853.1| 225 HRIATDGEVNEEYRDKLLGA 244
                                       67999999*****9999875 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00031      0.26      14      43 ..      29      58 ..      23     105 .. 0.78
   2 ?   -2.2   0.0         7   5.9e+03      46      64 ..     230     248 ..     219     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00031
                            HTH_40 14 sieeIAkerglkesTIegHLaelieegeei 43
                                       + e A+e   ++sT+  HL+ l + g+ i
  gi|300713041|ref|YP_003738853.1| 29 GVNELAEELDYSPSTVHAHLTTLHQLGYLI 58
                                      57899********************99633 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7
                            HTH_40  46 erlvseeeekeIeeaiekv 64 
                                       +  v+ee ++++  aie++
  gi|300713041|ref|YP_003738853.1| 230 DGEVNEEYRDKLLGAIEDI 248
                                       5568889999999998875 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00018      0.16       3      45 ..      16      58 ..      15      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
                            HTH_34  3 lavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYie 45
                                      +++l y +++     +el e+l  + +   +hl++L + gY+ 
  gi|300713041|ref|YP_003738853.1| 16 FSILEYIVTNGAKGVNELAEELDYSPSTVHAHLTTLHQLGYLI 58
                                      789**************************************86 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.06        51      31      46 .]      27      42 ..      17      42 .. 0.82
   2 ?    4.3   0.2     0.042        36      23      42 ..      91     110 ..      86     110 .. 0.84
   3 ?    0.2   0.0      0.77   6.6e+02      22      40 ..     229     247 ..     224     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.06
                                      HHHHHHHHHHTTB-TT CS
                              LacI 31 rerVeaameelnYiPn 46
                                      ++ V++ +eel+Y P+
  gi|300713041|ref|YP_003738853.1| 27 AKGVNELAEELDYSPS 42
                                      5679999*******96 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.042
                                       SSSSTHHHHHHHHHHHHHTT CS
                              LacI  23 kerVseetrerVeaameeln 42 
                                        +r +eet erV   +ee++
  gi|300713041|ref|YP_003738853.1|  91 VRRLAEETNERVQFMVEEQG 110
                                       48999********9999986 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.77
                                       TSSSSTHHHHHHHHHHHHH CS
                              LacI  22 nkerVseetrerVeaamee 40 
                                        ++ V ee r++ + a+e 
  gi|300713041|ref|YP_003738853.1| 229 TDGEVNEEYRDKLLGAIED 247
                                       5688999999999999986 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00036      0.31      17      55 ..      17      55 ..      13      58 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00036
                                      HHHHHHHHHSSBEHHHHHHHHSSTHHHHHHHHHHHHHTT CS
                             HTH_9 17 kVvetLlrkgrltlrelvkktkLsldqVkksLvvLiqhr 55
                                       + e+++ +g++ ++el+++++ s++ V+  L +L q++
  gi|300713041|ref|YP_003738853.1| 17 SILEYIVTNGAKGVNELAEELDYSPSTVHAHLTTLHQLG 55
                                      7999*******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1819.44
//
Query:       gi|300713042|ref|YP_003738854.1|  [L=237]
Description: haloacid dehalogenase, type II [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-13   51.2   0.0    3.3e-13   50.1   0.0    1.5  1  HAD_2           Haloacid dehalogenase-like hydrolase
    1.4e-06   28.7   0.0    1.5e-05   25.4   0.0    2.0  1  Hydrolase       haloacid dehalogenase-like hydrolase
      0.002   18.1   0.0     0.0041   17.1   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.093   12.5   0.0       0.17   11.6   0.0    1.4  1  SurA_N_3        SurA N-terminal domain


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   7.3e-17   3.3e-13       3     174 ..      18     203 ..      16     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 7.3e-17
                             HAD_2   3 FDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee................... 60 
                                       FDl +Tlld+e ++i a+  ll +++++  +e  lr+++ ++ r+++  + +                         
  gi|300713042|ref|YP_003738854.1|  18 FDLWDTLLDRESTLIPALDGLLTDHDCDYDPEILLRRYLAMHFRDSMIDSLIPGPHTPfkeisrralsyrleqlgld 94 
                                       *************************6644444445555555554443333332222223566677777766667665 PP

                             HAD_2  61 kieellrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPd 137
                                         +e +r++  +   k+++py++v ++L+ L   +ykl   ++++ ++++      ++e+ +d +v+  d++  KP+
  gi|300713042|ref|YP_003738854.1|  95 VPDEEIRRVIRQW--KTLQPYPDVDSALDRL-GDEYKLVGLSNGDPDMLNAVRP--NFETELDGVVSVADAGAYKPH 166
                                       4444444444444..55**************.889***999***9998877655..55689**************** PP

                             HAD_2 138 peviekaleklklkkeeviyvGDsptDieaakkagik 174
                                        +++  +++++++ ++ev++v  +++D+ +ak++g++
  gi|300713042|ref|YP_003738854.1| 167 RASYDLCCDEFDVAPHEVVFVTSHTFDLVGAKAVGMR 203
                                       ***********************************98 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.2e-09   1.5e-05      88     210 .]      83     201 ..      13     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.2e-09
                                       HHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEE CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                         Hydrolase  88 aaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdavi 164
                                       a  + +++ g +v  +  ++++v+    +l+++p++  a+ +L +  +++v l++++p + +++  ++    +d+v+
  gi|300713042|ref|YP_003738854.1|  83 ALSYRLEQLGLDVPDE--EIRRVIRQWKTLQPYPDVDSALDRLGDE-YKLVGLSNGDPDMLNAVRPNFE-TELDGVV 155
                                       4444555556666666..**************************66.99*************9999999.677**** PP

                                       EHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                         Hydrolase 165 asdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                                       ++ + +  kp+   +   ++e+ + p+ev++V     D+ +++a+g
  gi|300713042|ref|YP_003738854.1| 156 SVADAGAYKPHRASYDLCCDEFDVAPHEVVFVTSHTFDLVGAKAVG 201
                                       ********************************98888888888876 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.2e-07    0.0041       4      71 ..     164     227 ..     162     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.2e-07
                                       TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SE CS
                    Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvadd 71 
                                       KP++ +yd    +++++p+ev+++      D+ gA+++G+++++  +  +         h+p+ ++ d
  gi|300713042|ref|YP_003738854.1| 164 KPHRASYDLCCDEFDVAPHEVVFVTSH-TFDLVGAKAVGMRGAFLNRHENP--Y-GGWIHRPDLIVAD 227
                                       9**************************.*************9987553322..2.2355666666665 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.8e-05      0.17      92     124 ..      79     111 ..      76     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.8e-05
                          SurA_N_3  92 idealllqeakklglsvsdeevakeiasipaFq 124
                                       i++++l+   ++lgl v+dee+++ i++ + +q
  gi|300713042|ref|YP_003738854.1|  79 ISRRALSYRLEQLGLDVPDEEIRRVIRQWKTLQ 111
                                       89999***********************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1811.97
//
Query:       gi|300713043|ref|YP_003738855.1|  [L=660]
Description: tyramine oxidase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.9e-153  510.6   3.5   3.5e-153  510.3   3.5    1.1  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
    5.8e-14   52.3   0.0    1.3e-13   51.2   0.0    1.6  1  Cu_amine_oxidN3  Copper amine oxidase, N3 domain
    1.6e-05   25.0   0.0    3.2e-05   24.1   0.0    1.5  1  Cu_amine_oxidN2  Copper amine oxidase, N2 domain


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  510.3   3.5  5.9e-157  3.5e-153       2     410 .]     228     645 ..     227     645 .. 0.96

  Alignments for each domain:
  == domain 1  score: 510.3 bits;  conditional E-value: 5.9e-157
                                       ----TT---SEEETTTEEEETTEEEEEEEETTTEEEEEEEEETT....EEEEEEEEEEEEEEEE--SSHHHHH-EEE CS
                     Cu_amine_oxid   2 evvqpeGpsfkvdegnlvewqkWsfrvgfnrreGlvlhdvrykg....rrilyrlslsemvvpYgdprppasrkaaf 74 
                                       +v+qpeG s++v +g++vewq+W+frvg++ reGlvlh++r+++    r+il+r+s s m+vpYgd +p++++k+af
  gi|300713043|ref|YP_003738855.1| 228 DVIQPEGTSWEV-DGREVEWQGWKFRVGWTDREGLVLHNIRFDDdgdtRKILHRASTSAMAVPYGDVDPNHNWKNAF 303
                                       699*********.7*************************************************************** PP

                                       GGGT.-SGGG-----TTTSS-TT-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S.....EEEE--EEEEE CS
                     Cu_amine_oxid  75 DlgeyglGklansLelgcDClgeityldavladssgepvtiknaiCifEedagilwkHtdfrtgr.aevtrnreLvv 150
                                       D++e+++G+++nsL++gcDClge++y+dav++d++g++ +i+naiC++Eed+g+lwkHt++r+++ +ev+r+r+Lvv
  gi|300713043|ref|YP_003738855.1| 304 DISEFNVGRMVNSLTEGCDCLGEMYYFDAVTNDRDGNVLEIPNAICMHEEDDGLLWKHTEWRQEDqTEVRRRRRLVV 380
                                       ***************************************************************955*********** PP

                                       EEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE-T.........GG--EEETTEE---EEEEEEEEEEE-T.S CS
                     Cu_amine_oxid 151 rtiatvgNYdYifdyiFkqdGsievevratGilstaalaeee..e..skygtrvapgvlasiHqHlfslrvDldidg 223
                                       ++iatv NYdY+f+++F+qdG ie+e+r+tGi s  ++ +++  +  + + ++vap+v  siHqH f++r+D+d+dg
  gi|300713043|ref|YP_003738855.1| 381 SQIATVYNYDYAFYWYFYQDGRIEAEMRLTGIDSNGVVPQGTtaDdtDGFYEVVAPQVKTSIHQHHFNFRLDFDVDG 457
                                       **************************************98886525579**************************** PP

                                       SEEEEEEEEE-T.......TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEEEEEEEE-TTS-EEEEEEE CS
                     Cu_amine_oxid 224 eknsvveeelvp.....eepelgeenpagnafkvektvletekeaaldldpeknrvlkivnenkknklgepvgYklv 295
                                       e+ns  e + +p     +++  +++n  g+++++++t lete+ea++d+dp ++r++kivn+n++n++g ++gY+l+
  gi|300713043|ref|YP_003738855.1| 458 ETNSAFEIHNEPvddiaWTH-EESDNTGGQGWYADETLLETEQEARMDIDPLRDRYWKIVNPNETNSYGYNTGYTLH 533
                                       99*******96654554643.4458**************************************************** PP

                                       -S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS.---GGGG-.S--B-SSEEEEEEEEEE CS
                     Cu_amine_oxid 296 pssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskgepvglakwvednesieneDlVvWvtlG 372
                                       p++  + +  ++ +s  ++ra f ++++wvt+y+++e++a g+y+nq+++ p+gl++w++ +++ie+eDlV+W+tlG
  gi|300713043|ref|YP_003738855.1| 534 PAT--NVASPMQSGSPAQRRAGFLENNFWVTPYNEDEMFADGDYPNQNDN-PHGLREWTKADRNIEQEDLVAWYTLG 607
                                       *44..6679999************************************99.99************************ PP

                                       EEE---GGGSS-TTTSEEEEEEEEES-SSS-GGGG-S- CS
                     Cu_amine_oxid 373 ltHvpraeDfPvmpvetvsflLkPvnFfdenpaldvpp 410
                                       ++H +r+eD+Pv pve +sf++ P +Ffdenp+++vpp
  gi|300713043|ref|YP_003738855.1| 608 VNHRTRPEDWPVLPVEIASFEIAPEGFFDENPSVHVPP 645
                                       ***********************************985 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   2.2e-17   1.3e-13       6      96 ..     105     199 ..     100     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 2.2e-17
                                       HHHHHHHHHHHTGGGGHHHHHHHHTTT.T---EEEE--SS-SSST....T--EEEEEEEE--SSS.-GCGSEEE.EE CS
                   Cu_amine_oxidN3   6 eelaeieevikelpqfkealkkrgienldkvvltpltvgyrgeks...egkRllkalvyyrtesa.nlyahPiegLe 78 
                                       e+ +e+ee+++++++++ea kkrg+en d  +++p+ +   +      eg+Rl++ l++  ++++ n ya+Pieg +
  gi|300713043|ref|YP_003738855.1| 105 EDIFEAEEAVRQSEEWQEAAKKRGVENFDLAIVDPWPINSSEFVPdglEGRRLARGLSWIAESKEdNAYARPIEGVH 181
                                       78999*******************************9988886544789**********9998888*********** PP

                                       EEEE--SSSGGG-EEEEE CS
                   Cu_amine_oxidN3  79 llvDleakkvieitdqkv 96 
                                       ++vDl++++v+e  d++v
  gi|300713043|ref|YP_003738855.1| 182 AFVDLDEMEVVEVVDNGV 199
                                       ***********9998875 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.4e-09   3.2e-05       1      84 [.      11      92 ..      11      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 5.4e-09
                                      HHHHHHHHHHHHHCCCCCCCCTCT-TTSEEEEEEEEE---HHHHHHHHHCH---S-EEEEEEEEETSSS..SEEEEEEE CS
                   Cu_amine_oxidN2  1 hpLdaltaaeinkvesilkssaletskknsffeveLeePdKkavlqflekgeppppRkAsvvilfGkqt..kelvvdLa 77
                                      hpLd+lt aein +++il++s+ +  +   f + +  eP K+ v ++ + g     R   v  ++ +++  +e++v L 
  gi|300713043|ref|YP_003738855.1| 11 HPLDPLTEAEINSTTEILQESQ-KIGSTFGFYSYQPVEPSKEEVEAW-DGG--SVDRDVLVALRDFQEKttYEATVSLP 85
                                      9********************9.9999********************.544..35677777666544333478888887 PP

                                      EEECCSE CS
                   Cu_amine_oxidN2 78 tgkllsp 84
                                       + + s+
  gi|300713043|ref|YP_003738855.1| 86 DSEVTSW 92
                                      7777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4519.14
//
Query:       gi|300713044|ref|YP_003738856.1|  [L=137]
Description: inner-membrane translocator [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1058.70
//
Query:       gi|300713045|ref|YP_003738857.1|  [L=669]
Description: large subunit of N,N-dimethylformamidase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-06   27.1   0.3     0.0002   21.5   0.0    2.9  2  Laminin_G_3  Concanavalin A-like lectin/glucanases superfamil


Domain annotation for each model (and alignments):
>> Laminin_G_3  Concanavalin A-like lectin/glucanases superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.1e-08    0.0002      33     147 ..      10     153 ..       2     158 .. 0.74
   2 ?   -1.3   0.1      0.12   2.1e+03      36      71 ..     440     474 ..     427     489 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.1e-08
                       Laminin_G_3  33 aaqiiissssdgrgfelgldgsgrlrfsvnagngaeesvtsga.....svpageWtHvavtyd..ggtlrlYvNGve 102
                                        +q++++++ d++g++l++++sg+l ++++++ng+   v+sg      + +  +W++v +t+d  +gt++lY    +
  gi|300713045|ref|YP_003738857.1|  10 GEQALLTKFADNTGYGLYISQSGDLCLRLAGSNGEIVEVNSGLvfeggKRQGATWYFVGATFDpdDGTVTLYQEPHP 86 
                                       4556666676777*********************99999987722222445568*********9999*****99988 PP

                       Laminin_G_3 103 vgsatltgg...............llsatsgplviGrdp....gg...ddpfdGlidevriynrals 147
                                        ++++   +                ++++++plviG++p    +g   ++ ++G++   ++++ al 
  gi|300713045|ref|YP_003738857.1|  87 ENQRKILHPideyeamveesvdinGIATNDSPLVIGGEPmetgNGvvaKSCYNGKLERPQVFSEALD 153
                                       8888776665666666667776654557788888888887753227778888888888888888876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.12
                       Laminin_G_3  36 iiissssdgrgfelgldgsg.rlrfsvnagngaeesv 71 
                                       ++  ++++g g+ +++  +g +++++++ ++++   v
  gi|300713045|ref|YP_003738857.1| 440 VLS-YQQQG-GRFMYMGANGfYWSIAFHPEDSQTIEV 474
                                       333.44555.666666666666666666665433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4602.14
//
Query:       gi|300713046|ref|YP_003738858.1|  [L=204]
Description: hypothetical protein HacjB3_18638 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-28   97.3  15.9    7.5e-28   97.3  15.9    2.0  2  DUF5134   Domain of unknown function (DUF5134)


Domain annotation for each model (and alignments):
>> DUF5134  Domain of unknown function (DUF5134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.5    0.0063   1.1e+02      21      48 ..       6      36 ..       1      40 [. 0.62
   2 !   97.3  15.9   4.2e-32   7.5e-28       1     151 []      41     200 ..      41     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0063
                           DUF5134 21 wpagvalpsag..q.lavvfalaalwflvla 48
                                      w  ++ l s +  + ++vv+a+++++ l +a
  gi|300713046|ref|YP_003738858.1|  6 WMSNIGLLSEWlrWpWIVVYAVVTVVHLSHA 36
                                      5555555555533257888888888877666 PP

  == domain 2  score: 97.3 bits;  conditional E-value: 4.2e-32
                           DUF5134   1 tarvsavlhllMavgMaaMawpagvalpsagq....lavvfalaalwflvlavvrrrataarrlahlyhavmmlAMv 73 
                                       +++v++++h++MavgM +M++p+++++ s+++    ++++ a++++w+l+l++++r+         ++++++++AM+
  gi|300713046|ref|YP_003738858.1|  41 CRQVWHSNHVVMAVGMGYMFLPTRLKAVSDEVwqitFIIIAATIVVWVLHLWATQRT----IDFLWMISLFDVVAMI 113
                                       579**************************9944699*****************9873....344559********** PP

                           DUF5134  74 yMaaamalaaggghsghaaagasmpggvplvtgvlavyFaaaalvwl..........arllp..............a 126
                                       yM+a++                  +++++++t++l++yF++ ++vw+           rllp               
  gi|300713046|ref|YP_003738858.1| 114 YMFAFP------------------EAAIAPLTYLLVIYFILETIVWMggvfdhtrqwGRLLPvlihsrlysrlifhE 172
                                       ******..................999********************555554443225555888877776666652 PP

                           DUF5134 127 papa......elaracrlvMalGMaaMllal 151
                                                  ++r++ ++Ma+GMa+M++++
  gi|300713046|ref|YP_003738858.1| 173 ---PlvgsssGRERMTLSAMAAGMAYMFIIM 200
                                       ...0445777*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1512.45
//
Query:       gi|300713047|ref|YP_003738859.1|  [L=168]
Description: hypothetical protein HacjB3_18643 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0061   16.4   0.1       0.42   10.5   0.0    2.3  2  HSBP1          Heat shock factor binding protein 1
  ------ inclusion threshold ------
      0.037   13.9   0.4      0.055   13.3   0.3    1.4  1  ACCA           Acetyl co-enzyme A carboxylase carboxyltransfe
      0.037   13.7   4.3       0.22   11.2   0.6    2.1  2  SHE3           SWI5-dependent HO expression protein 3
        0.1   13.1   1.2       0.18   12.3   1.2    1.5  1  Spectrin       Spectrin repeat
       0.15   11.0   0.0       0.16   10.9   0.0    1.2  1  SelA           L-seryl-tRNA selenium transferase
       0.24   10.0   1.8       0.43    9.2   0.1    1.8  2  AAA_13         AAA domain
       0.29   11.4   4.9       0.26   11.5   2.1    2.2  2  ABC_tran_CTD   ABC transporter C-terminal domain
       0.34   11.0   2.9        1.4    9.1   0.3    2.3  2  DUF2730        Protein of unknown function (DUF2730)
        1.9    8.4   6.4       0.47   10.3   1.6    2.3  3  PKcGMP_CC      Coiled-coil N-terminus of cGMP-dependent prote
        2.2    7.8   8.2        1.4    8.4   4.7    1.9  2  MscS_porin     Mechanosensitive ion channel porin domain
        2.4    8.3   9.5         14    5.8   9.5    2.0  1  Tropomyosin_1  Tropomyosin like


Domain annotation for each model (and alignments):
>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.033        53      34      47 ..      12      25 ..       6      29 .. 0.86
   2 !   10.5   0.0   0.00026      0.42      26      49 ..      36      59 ..      33      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.033
                             HSBP1 34 sriDdLEksiadlm 47
                                      +r+++LE++++++ 
  gi|300713047|ref|YP_003738859.1| 12 KRVEELEAQLTEYK 25
                                      8********99875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00026
                             HSBP1 26 lsriDdMssriDdLEksiadlmtq 49
                                       +ri d + r D+LE+++++  t+
  gi|300713047|ref|YP_003738859.1| 36 RGRITDVEDRADELETTLQETPTE 59
                                      58*****************98765 PP

>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   3.4e-05     0.055       5      60 ..      11      66 ..       7      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-05
                              ACCA  5 ekpiaeleekieelkklaeesevdlseeieklekkleklkkeiyknltpwqkvqla 60
                                      +k+++ele++++e k++a ++ +d++ +i+++e+++++l+++++++ t+  +v + 
  gi|300713047|ref|YP_003738859.1| 11 DKRVEELEAQLTEYKRFAGSEFADVRGRITDVEDRADELETTLQETPTETTTVDVE 66
                                      789***************************************99998888888775 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   0.00013      0.22      57      80 ..       3      26 ..       2      36 .. 0.89
   2 ?    4.0   0.2     0.021        34      67     107 ..      38      76 ..      32      85 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
                                      HHHHHHHHHHHHHHHHHHHHHHHH CS
                              SHE3 57 LsslLkRKerrlkdlekelselke 80
                                      L + L+RK++r+ +le +l+e+k+
  gi|300713047|ref|YP_003738859.1|  3 LEAELNRKDKRVEELEAQLTEYKR 26
                                      7788****************9986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.021
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH CS
                              SHE3  67 rlkdlekelselkesveelklekkqlkkrlenssasetele 107
                                       r+ d+e+   el++  +e  +e+++++ +  +  ++ t++e
  gi|300713047|ref|YP_003738859.1|  38 RITDVEDRADELETTLQETPTETTTVDVEETD--SQTTTTE 76 
                                       99****************99999988765444..4444444 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2   0.00011      0.18      22      79 ..       5      62 ..       1      81 [. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                                      HHHCCSSCSSSHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHH.HHTTHTTHHHHH CS
                          Spectrin 22 ellssedlgkdleevqallkkhkale.aelaaqqervkalnelaekl.ldeghsaseeie 79
                                      ++l+  ++ k +ee++a+l+++k++   e+a+ ++r++++++ a++l ++ ++  +e ++
  gi|300713047|ref|YP_003738859.1|  5 AELN--RKDKRVEELEAQLTEYKRFAgSEFADVRGRITDVEDRADELeTTLQETPTETTT 62
                                      4553..344589999999999999984689999999999999999995555544444444 PP

>> SelA  L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001      0.16     280     345 ..      40     105 ..      10     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                                       HHHHHHHHHHHHHHTTSTT..EEEEEEEEEE-TCSSS-SS--EEEEEEEEEESSS-HHHHHHHHHT CS
                              SelA 280 eelrakaerlqkelkealgselevkvvkslsqvGsGslPveelpsaaltiaeekakleaLeerlra 345
                                        +++ +a +l+++l+e+ +++ +v+v+++ sq  +   P e++ +    +a+++ ++++ ++r+ a
  gi|300713047|ref|YP_003738859.1|  40 TDVEDRADELETTLQETPTETTTVDVEETDSQTTTTETPLERICTLPEHVADRELTTNQQRARFIA 105
                                       67999**************************************99988888866655555444444 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2     0.097   1.6e+02     435     458 ..       3      26 ..       1      30 [. 0.75
   2 ?    9.2   0.1   0.00026      0.43      88     203 ..      29     142 ..      26     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.097
                            AAA_13 435 eeaelkkleeeikeLekqlrdekp 458
                                        eael+ ++++++eLe+ql++ k+
  gi|300713047|ref|YP_003738859.1|   3 LEAELNRKDKRVEELEAQLTEYKR 26 
                                       567788888888888888887776 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00026
                            AAA_13  88 Geesiekqekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfke 164
                                       G+e ++ + +i+  ++  ++le+ l+++  + +  + e+++ +++ +++  + i +  +   +++l+ ++++++f +
  gi|300713047|ref|YP_003738859.1|  29 GSEFADVRGRITDVEDRADELETTLQETPTETTTVDVEETDSQTTTTETPLERICTLPEHVADRELTTNQQRARFIA 105
                                       7778889999999999999999999999888888888888888888888889999999999999**99********* PP

                            AAA_13 165 rllkelkkknrkaaellsdeelkakletvesenlpelap 203
                                       ++++++++k  ++a l+ d++  ak+ t+ + ++p  + 
  gi|300713047|ref|YP_003738859.1| 106 QDVRDYAEK--APAGLVLDSQTIAKVITAAEGSKPHTRL 142
                                       ******997..7888888888888877776666665554 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.1   0.00016      0.26      12      62 ..       2      51 ..       1      57 [. 0.65
   2 ?    5.9   0.1    0.0095        16       9      58 ..      31      80 ..      28      84 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                      ABC_tran_CTD 12 eleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelye 62
                                      +leae+++ +++ +elea+l +   ++   ++a++  +++++e+  +el+ 
  gi|300713047|ref|YP_003738859.1|  2 QLEAELNRKDKRVEELEAQLTEYKRFAG-SEFADVRGRITDVEDRADELET 51
                                      5777777888888888887776654432.4677777777777776666654 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0095
                      ABC_tran_CTD  9 eleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLe 58
                                      e++ +  +I   E +  ele+ l++    ++   + e+  + ++ e+ Le
  gi|300713047|ref|YP_003738859.1| 31 EFADVRGRITDVEDRADELETTLQETPTETTTVDVEETDSQTTTTETPLE 80
                                      77788899999999999999999988766666777777777777777666 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.11   1.9e+02      38      57 ..       3      22 ..       1      26 [. 0.80
   2 ?    9.1   0.3   0.00085       1.4      33      88 ..      30      81 ..      24      95 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
                           DUF2730 38 laekveendkrlteletkve 57
                                      l+ +++++dkr++ele+++ 
  gi|300713047|ref|YP_003738859.1|  3 LEAELNRKDKRVEELEAQLT 22
                                      66677889999999999985 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00085
                           DUF2730 33 edleklaekveendkrlteletkvenLPtakdlekLkllladlrgelkaleaevrq 88
                                      ++ + +   +++ + r +elet++++ Pt+       +++++++ ++ ++e  +++
  gi|300713047|ref|YP_003738859.1| 30 SEFADVRGRITDVEDRADELETTLQETPTETT----TVDVEETDSQTTTTETPLER 81
                                      577788889999****************9754....45555566666665555555 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.6   0.00029      0.47      13      31 ..       3      21 ..       2      24 .. 0.80
   2 ?   -1.0   0.1         1   1.7e+03       9      18 ..      45      54 ..      38      59 .. 0.65
   3 ?   -2.1   0.0       2.2   3.6e+03       8      21 ..      80      93 ..      80      98 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00029
                         PKcGMP_CC 13 LEkrlaekdeEIqELrskL 31
                                      LE+ l++kd+ ++EL ++L
  gi|300713047|ref|YP_003738859.1|  3 LEAELNRKDKRVEELEAQL 21
                                      7888888888888888887 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1
                         PKcGMP_CC  9 RIRELEkrla 18
                                      R  ELE  l+
  gi|300713047|ref|YP_003738859.1| 45 RADELETTLQ 54
                                      4457776665 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.2
                         PKcGMP_CC  8 ERIRELEkrlaekd 21
                                      ERI  L + +a+++
  gi|300713047|ref|YP_003738859.1| 80 ERICTLPEHVADRE 93
                                      78888888888887 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.7   0.00087       1.4      82     154 ..       2      75 ..       1      82 [. 0.81
   2 ?    2.5   1.1     0.057        92      89     136 ..      60     108 ..      55     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00087
                        MscS_porin  82 eLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaage....alsqaqrtal 154
                                       +Le +l+    +++el++ql++++   + + +  + ++ ++t+   r +e+++ L++t+++++    + +++q t +
  gi|300713047|ref|YP_003738859.1|   2 QLEAELNRKDKRVEELEAQLTEYK---RFAGSEFADVRGRITDVEDRADELETTLQETPTETTtvdvEETDSQTTTT 75 
                                       899999999999999999999998...567788999*******************9999888888444444444444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.057
                        MscS_porin  89 qtssqlqelqeqlaqlnsqlvelqtrper.aqqqltearqrlqeirnrL 136
                                       +t  +++e+ +q ++ ++ l  + t pe  a  +lt+++qr   i ++ 
  gi|300713047|ref|YP_003738859.1|  60 TTTVDVEETDSQTTTTETPLERICTLPEHvADRELTTNQQRARFIAQDV 108
                                       56778889999999999999999999998345689*****999888766 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.5    0.0086        14       5     109 ..       3      66 ..       1     114 [. 0.49

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0086
                     Tropomyosin_1   5 LkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrk 81 
                                       L +e +   +++eele+++ e+   +    +e ++                                         +
  gi|300713047|ref|YP_003738859.1|   3 LEAELNRKDKRVEELEAQLTEY---KRFAGSEFADVRG--------------------------------------R 38 
                                       2233333333444444433322...2233344445555......................................5 PP

                     Tropomyosin_1  82 iqlLEeeleesdkkLkettekLretdvk 109
                                       i  +E+ ++e +++L+et +  + +dv+
  gi|300713047|ref|YP_003738859.1|  39 ITDVEDRADELETTLQETPTETTTVDVE 66 
                                       5555555555555555544433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1336  (0.0745161); expected 358.6 (0.02)
Passed bias filter:                      854  (0.0476323); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1183.72
//
Query:       gi|300713048|ref|YP_003738860.1|  [L=194]
Description: hypothetical protein HacjB3_18648 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-08   32.7   0.0    8.6e-08   32.0   0.0    1.3  1  TrmB             Sugar-specific transcriptional regulator Trm
      0.001   18.8   0.6     0.0031   17.3   0.1    2.0  2  HTH_IclR         IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.029   14.4   0.7      0.059   13.4   0.2    1.7  2  HTH_20           Helix-turn-helix domain
      0.039   13.7   0.2      0.072   12.9   0.2    1.4  1  HTH_DeoR         DeoR-like helix-turn-helix domain
      0.051   13.9   0.1      0.094   13.1   0.1    1.5  1  Penicillinase_R  Penicillinase repressor


Domain annotation for each model (and alignments):
>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.4e-11   8.6e-08      11      67 ..      28      85 ..      27      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.4e-11
                                      CCHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST.TTEEEE--H CS
                              TrmB 11 akvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr.pklYravdp 67
                                      a+ Y+++l++g+ t+d+i  +l+ pr+++Y     L++ Gl +r +++ ++ Y a+++
  gi|300713048|ref|YP_003738860.1| 28 ARLYTYILREGEVTVDTITADLETPRTTAYADTGTLVELGLLTRDESKkTHTYTATPI 85
                                      689*******************************************88577***9986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   8.5e-07    0.0031      17      51 ..      38      72 ..      32      73 .. 0.91
   2 ?   -2.1   0.0      0.96   3.4e+03       5      14 ..     158     167 ..     156     173 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.5e-07
                                      SS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
                          HTH_IclR 17 qeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                                      +e+t+  + + +  p++t++  + tLvelG++++d
  gi|300713048|ref|YP_003738860.1| 38 GEVTVDTITADLETPRTTAYADTGTLVELGLLTRD 72
                                      5689999999***********************99 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.96
                                       HHHHHCT-CT CS
                          HTH_IclR   5 alaiLdalae 14 
                                       ++a+L al e
  gi|300713048|ref|YP_003738860.1| 158 GIAVLHALQE 167
                                       7899999987 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   1.7e-05     0.059       3      59 ..      18      74 ..      16      76 .. 0.92
   2 ?   -2.3   0.0       1.3   4.8e+03      22      36 ..     139     153 ..     129     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
                                      HHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
                            HTH_20  3 iaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                                      +a++L +P  +r++ ++ r++++t+  + + l+++++t++    +L+e gL+++ ++
  gi|300713048|ref|YP_003738860.1| 18 VAHVLEEPRLARLYTYILREGEVTVDTITADLETPRTTAYADTGTLVELGLLTRDES 74
                                      678888899999999999**********************************99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                                       CTTB-HHHHHHHHTS CS
                            HTH_20  22 aegltaselaerldl 36 
                                       ++++t    a++ldl
  gi|300713048|ref|YP_003738860.1| 139 DGEMTERVAARELDL 153
                                       678899999999987 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     2e-05     0.072       1      46 [.      26      71 ..      26      73 .. 0.97

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
                          HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltR 46
                                      R++ +  ++ ++g ++v+ +++ l++  +T+  D  +L+e glltR
  gi|300713048|ref|YP_003738860.1| 26 RLARLYTYILREGEVTVDTITADLETPRTTAYADTGTLVELGLLTR 71
                                      888999**************************************99 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.6e-05     0.094      10      65 ..      32      83 ..      28     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
                                      HHHHHHS-EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEETTEEEEE-- CS
                   Penicillinase_R 10 eilwekgeatvkevveeleeekelaysTVktllrrLvkKgllsrekegrafiYspl 65
                                       ++ ++ge+tv+ + + le ++++ay+ +    + Lv+ gll+r+++++++ Y+++
  gi|300713048|ref|YP_003738860.1| 32 TYILREGEVTVDTITADLETPRTTAYADT----GTLVELGLLTRDESKKTHTYTAT 83
                                      678899***************66666655....568999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1419.05
//
Query:       gi|300713049|ref|YP_003738861.1|  [L=172]
Description: hypothetical protein HacjB3_18653 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0012   19.1   0.0     0.0017   18.6   0.0    1.1  1  PIN_4     PIN domain
  ------ inclusion threshold ------
      0.061   13.8   0.0       0.35   11.3   0.0    1.9  2  PIN_12    PIN domain


Domain annotation for each model (and alignments):
>> PIN_4  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.9e-07    0.0017      13     115 ..      29     141 ..      26     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.9e-07
                             PIN_4  13 ealksf..keehdvviPitVleELdklKkgsse.............relarlarqanrlldellekesgrlkvqtsa 74 
                                       +al++f  ++++ ++iP+ V eEL +   +s                ++a++   +n+++  ++ ++ + +   +s+
  gi|300713049|ref|YP_003738861.1|  29 TALERFatQNHITLIIPQHVYEELTGAPAQSTPgqipidsaitsgwVTVAEELDYTNSTIATVMDRTRSYI--ANSS 103
                                       67888876677779***********9999987788777777766666666666666666666665433333..3333 PP

                             PIN_4  75 eelpeeeseseknDnrIlavalelkeekpdrkvvLvskDin 115
                                       +  pe++   e++D +   +a++l  + ++ +v+Lv+ D+ 
  gi|300713049|ref|YP_003738861.1| 104 N-RPEDQ--IERADTALAGIAVQLLLQGSAPSVCLVTTDTD 141
                                       3.33333..349***************************85 PP

>> PIN_12  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     4e-05      0.35       6      46 ..      15      53 ..      11      58 .. 0.81
   2 ?    0.2   0.0       0.1   9.3e+02     110     170 ..      78     141 ..      69     141 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
                            PIN_12  6 nifldeffrlseeealkklleliesgkiklivpdivldEfl 46
                                       +f+   +  +e+++ ++l+++  +++i+li+p+ v++E+ 
  gi|300713049|ref|YP_003738861.1| 15 GLFIA--CGRQENTKYTALERFATQNHITLIIPQHVYEELT 53
                                      56664..334455589***********************85 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.1
                            PIN_12 110 ikvipetndevkkilerafkkkpPf..skkkkkgfgDaliwesileyakknk.ekvifvsrDkD 170
                                       ++++++tn+ + ++++r  +  +    + + + +  D+      ++ + + +  +v++v+ D+D
  gi|300713049|ref|YP_003738861.1|  78 AEELDYTNSTIATVMDRTRSYIANSsnRPEDQIERADTALAGIAVQLLLQGSaPSVCLVTTDTD 141
                                       5677888888888888877666666444446666667766666666666444355777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 1178.68
//
Query:       gi|300713050|ref|YP_003738862.1|  [L=113]
Description: hypothetical protein HacjB3_18658 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.45
# Mc/sec: 756.91
//
Query:       gi|300713051|ref|YP_003738863.1|  [L=267]
Description: chloroperoxidase-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-29  101.4   0.0    2.2e-28   99.6   0.0    1.7  1  Abhydrolase_1    alpha/beta hydrolase fold
      6e-19   69.5   0.0      7e-19   69.3   0.0    1.0  1  Abhydrolase_6    Alpha/beta hydrolase family
    2.6e-18   66.2   0.5    1.6e-17   63.6   0.5    1.8  1  Hydrolase_4      Serine aminopeptidase, S33
    0.00025   20.6   0.3      0.025   14.1   0.0    2.4  2  Peptidase_S9     Prolyl oligopeptidase family
    0.00035   20.4   0.0        0.4   10.4   0.0    2.3  2  Abhydrolase_2    Phospholipase/Carboxylesterase
     0.0024   16.6   0.0     0.0043   15.8   0.0    1.5  1  Ndr              Ndr family
     0.0064   16.1   0.1       0.33   10.5   0.0    2.1  2  DLH              Dienelactone hydrolase family
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.069   12.9   0.0    1.8  2  Abhydrolase_5    Alpha/beta hydrolase family
      0.014   15.1   0.0       0.33   10.6   0.0    2.2  2  PGAP1            PGAP1-like protein
      0.021   14.7   0.0      0.044   13.7   0.0    1.4  1  VirJ             Bacterial virulence protein (VirJ)
      0.026   13.6   0.0      0.038   13.0   0.0    1.2  1  DUF1057          Alpha/beta hydrolase of unknown function (DU
      0.075   13.1   0.0       0.13   12.4   0.0    1.3  1  Abhydrolase_4    TAP-like protein
      0.079   12.8   0.0        3.5    7.5   0.0    2.2  2  Ser_hydrolase    Serine hydrolase
      0.086   12.2   0.0       0.41    9.9   0.0    1.9  2  DUF915           Alpha/beta hydrolase of unknown function (DU
      0.095   12.8   0.0       0.14   12.3   0.0    1.4  1  Thioesterase     Thioesterase domain
       0.15   12.5   0.1       0.51   10.7   0.1    1.9  1  EHN              Epoxide hydrolase N terminus
       0.15   12.3   0.0       0.34   11.1   0.0    1.6  2  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0     2e-31   2.2e-28       2     256 ..      22     254 ..      21     255 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 2e-31
                                       EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEE CS
                     Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlv 78 
                                       ++v++hG+p s+ ++        L+++g ++i++DlrG+g+Ss+++    ++y ++++addl+ +ld l+++ ++l 
  gi|300713051|ref|YP_003738863.1|  22 PIVFVHGWPLSHRMFEY--QYIQLPREGIQCIGIDLRGYGQSSKPW----SEYDFDMFADDLKNVLDELDLEDVVLA 92 
                                       89***************..7777***********************....5799999******************** PP

                                       EETHHHHHHHHHHHHH.GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHH CS
                     Abhydrolase_1  79 GhSmGGmialayaaey.perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqr 154
                                       G+SmGG +++ y  ++  ++V ++v++ga   ++ l +  ++    + d+f   a  c + +a +++++ + + +++
  gi|300713051|ref|YP_003738863.1|  93 GFSMGGGVVTRYMGRHnGDHVGKVVMIGA--ASPVLAKKSDFPEGVDEDAFMDLAKGCYEDRAKVSSDFASSMFHSE 167
                                       *****************************..*******************************************999 PP

                                       HHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCH.HHH CS
                     Abhydrolase_1 155 hrlvdalkfpdkskrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvpp.kal 230
                                         ++ +l  + + +++  ++s++a+ ++ +a++ ++  +++   +             ptl+ ++ +D++ p     
  gi|300713051|ref|YP_003738863.1| 168 --PSPEL--KGWLQTMSMESSPQAMADSIEAVGEMDLRSDLEAIS------V------PTLICHSVHDQACPFeLTA 228
                                       ..55566..899999999999999999999999998888888744......4......******************* PP

                                       HHHHHCHTSEEEEEEETCSSSHHHHS CS
                     Abhydrolase_1 231 edlaqllpkkrlvvisdagHlafleg 256
                                       e+l + + +++lv+++ ++H +f+e+
  gi|300713051|ref|YP_003738863.1| 229 EKLHEGIENAELVRFEESEHALFYEE 254
                                       ***********************986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   6.6e-22     7e-19       1     219 [.      23     260 ..      23     261 .. 0.70

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 6.6e-22
                                       EEEE--GC.....G.CHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT..TTSEEEEEET CS
                     Abhydrolase_6   1 vlllHGagssassW.lvapLaallaagvhvlapDlpGhGrsdpppldled...ladlaalldelaagggpvvlvGHS 73 
                                       ++++HG ++s++++ +  +   l ++g++++ +Dl+G+G s+ p+ +++    ++dl ++ldel+    +vvl G S
  gi|300713051|ref|YP_003738863.1|  23 IVFVHGWPLSHRMFeY--QYIQLPREGIQCIGIDLRGYGQSSKPWSEYDFdmfADDLKNVLDELD--LEDVVLAGFS 95 
                                       8*****9999999976..778888899999*********888888888777766888*******6..********** PP

                                       CHHHHHHHHHHCC.......EE..EEES-........----TTT.....S----TTHHHHHHTT-C..CCCHCCHS- CS
                     Abhydrolase_6  74 lGGalalaaapla.....lvvg..vlldp..pp....talpagl.....laaalelllallallrl..lawlsrepl 130
                                       +GG ++++   +      ++vg  v++ +  p+          +      +a++ l+++ +  +++    + s    
  gi|300713051|ref|YP_003738863.1|  96 MGGGVVTR---YMgrhngDHVGkvVMIGAasPVlakkSD----FpegvdEDAFMDLAKGCYEDRAKvsSDFAS---- 161
                                       ********...7776699999999999994333444322....133346777777777777755554433333.... PP

                                       HSCCCCHHH...........CCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEEC..TT-CHHH.HCHHCCCH. CS
                     Abhydrolase_6 131 prlfladed...........adaawrarlarlaallaglgllpaaawadlpvpllvlg..geDplvp.rllerlla. 192
                                          f+++++           ++ + +a+ +   a   ++    +++++++ vp+l+ +    D+++p +l ++ l+ 
  gi|300713051|ref|YP_003738863.1| 162 -SMFHSEPSpelkgwlqtmsMESSPQAMADSIEAVGEMDL---RSDLEAISVPTLI-ChsVHDQACPfELTAEKLHe 233
                                       .244444442111111111134444444444445555555...88*********87.66799998884333344445 PP

                                       .STTEEETCE...SSS-HHHHSHHHHHH CS
                     Abhydrolase_6 193 .qagarlpvvlpgaGHlphleepdevae 219
                                        ++ a+l v ++ + H+++ ee ++++e
  gi|300713051|ref|YP_003738863.1| 234 gIENAEL-VRFEESEHALFYEEREKLNE 260
                                       9999999.********999989888765 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.5   1.5e-20   1.6e-17       7     238 ..      23     254 ..      21     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1.5e-20
                       Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGh 83 
                                       +v+vHG   + + ++    +L ++G++++++D rG+G+s  k +   +fd + dDl+ +++++      + ++l G 
  gi|300713051|ref|YP_003738863.1|  23 IVFVHGWPLSHRMFEYQYIQLPREGIQCIGIDLRGYGQS-SKPWSEYDFDMFADDLKNVLDELD----LEDVVLAGF 94 
                                       899************************************.99999***************9999....5579***** PP

                       Hydrolase_4  84 SmGGliallyllrypdkva.glilsaPalkikaklk.appllkl..llkllgkllpklqvsnnlkadslsrdpevva 156
                                       SmGG ++++y+ r+  +   +++++++a  + ak + +p+ +    ++ l++ ++ +    ++  a+s+ + +   +
  gi|300713051|ref|YP_003738863.1|  95 SMGGGVVTRYMGRHNGDHVgKVVMIGAASPVLAKKSdFPEGVDEdaFMDLAKGCYEDRAKVSSDFASSMFHSEPSPE 171
                                       ***********777775553788777665555554445555443445566655555544436666777888888888 PP

                       Hydrolase_4 157 ayeadplvhgkitvrlllelldam..krleeraakitlPllllhGeaDkvvdpeas.relyerlgskdktlklypgl 230
                                       +    + ++ + + + +++ ++a+  ++l+++ ++i++P+l+ h+ +D+ ++ e + ++l+e +   + +l  +++ 
  gi|300713051|ref|YP_003738863.1| 172 LKGWLQTMSMESSPQAMADSIEAVgeMDLRSDLEAISVPTLICHSVHDQACPFELTaEKLHEGIE--NAELVRFEES 246
                                       88888999**************98445789999********************999677777777..8********* PP

                       Hydrolase_4 231 yHellnEp 238
                                        H l+ E+
  gi|300713051|ref|YP_003738863.1| 247 EHALFYEE 254
                                       *****986 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.016        17      47      85 ..      69     108 ..      35     157 .. 0.72
   2 !   14.1   0.0   2.3e-05     0.025     130     200 ..     197     261 ..     152     267 .] 0.65

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.016
                                       HHHHHHHHHHHTT.S--GGGEEEEEETHHHHHHHHHHHH- CS
                      Peptidase_S9  47 Dfiaaaealakeg.yvdserlaitGgSyGGyltgaalnqr 85 
                                       Df   a+ l +     d e +++ G S GG ++   ++++
  gi|300713051|ref|YP_003738863.1|  69 DFDMFADDLKNVLdELDLEDVVLAGFSMGGGVVTRYMGRH 108
                                       444444444444446799************9999888854 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.3e-05
                                       HHHHH-CGGG--.---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHH CS
                      Peptidase_S9 130 elspyspldnvk.aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelar 200
                                       e+   s+l   + +++p+L++h+ +D+ +p++ ++   ++L +  +n++l+ f ++ H +   + + +  ++
  gi|300713051|ref|YP_003738863.1| 197 EMDLRSDL---EaISVPTLICHSVHDQACPFELTA---EKLHEGIENAELVRFEESEHALF-YEEREKLNEK 261
                                       33333333...2599***************99775...577775566***********544.3333344444 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00038       0.4     102     145 ..      84     128 ..      57     172 .. 0.78
   2 !    8.0   0.0    0.0021       2.2     144     211 ..     198     260 ..     174     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00038
                                       --GGGEEEEEETHHHHHHHHHHHT-SS.--SEEEEES---TTGGG CS
                     Abhydrolase_2 102 ipssriiigGFSqGaalalylaltlpk.klggivafsgalplsqk 145
                                       ++ +++++ GFS+G+ +++  +   +   +g +v ++ a p  +k
  gi|300713051|ref|YP_003738863.1|  84 LDLEDVVLAGFSMGGGVVTRYMGRHNGdHVGKVVMIGAASPVLAK 128
                                       67799********99888776666655366666666666555544 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0021
                                       GGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS--HHHHHHHHH CS
                     Abhydrolase_2 144 qklessatavtkklpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHsideeemqdike 211
                                       + l s   a+   +p l +H   D+  p+ l   ++e l + +++ el+ +e++ H+  +ee ++++e
  gi|300713051|ref|YP_003738863.1| 198 MDLRSDLEAIS--VPTLICHSVHDQACPFEL---TAEKLHEGIENAELVRFEESEHALFYEEREKLNE 260
                                       55555555566..99*************976...67888888999*************9999888876 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     4e-06    0.0043      83     135 ..      71     124 ..      60     267 .] 0.66

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4e-06
                                       HHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSG.GGEEEEEEES---S CS
                               Ndr  83 ddladqllavldhfklksviglGvgaGAyilarfalkhp.erveglvLinitsk 135
                                       d  ad+l++vld ++l+ v+  G   G  +++r+  +h+ + v  +v+i + s 
  gi|300713051|ref|YP_003738863.1|  71 DMFADDLKNVLDELDLEDVVLAGFSMGGGVVTRYMGRHNgDHVGKVVMIGAASP 124
                                       678*******************************87775377888888876664 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.042        44      96     119 ..      85     108 ..      68     131 .. 0.78
   2 !   10.5   0.0   0.00031      0.33     140     201 ..     204     262 ..     184     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.042
                               DLH  96 stkkvgvvGfCmGGalalllaaev 119
                                       + + v++ Gf mGG ++  +  + 
  gi|300713051|ref|YP_003738863.1|  85 DLEDVVLAGFSMGGGVVTRYMGRH 108
                                       56789**********998876654 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00031
                               DLH 140 aakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsresyneea 201
                                        + i++p l+ +  +D+  p++    ++e+l +   ++el+ +++  Ha + ++re+ ne+ 
  gi|300713051|ref|YP_003738863.1| 204 LEAISVPTLICHSVHDQACPFEL---TAEKLHEGIENAELVRFEESEHALFYEEREKLNEKL 262
                                       567999**************995...666666666999*****************9999875 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.6e-05     0.069      45      89 ..      76     121 ..      71     133 .. 0.77
   2 ?   -0.7   0.0      0.98     1e+03      94     143 ..     202     251 ..     194     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.6e-05
                     Abhydrolase_5  45 kaeeiikeapklekfvvgGhslGGvvasrfaaee..ekiegvvflas 89 
                                         +++++e + le+ v++G s+GG v++r+  ++  +++  vv++++
  gi|300713051|ref|YP_003738863.1|  76 DLKNVLDELD-LEDVVLAGFSMGGGVVTRYMGRHngDHVGKVVMIGA 121
                                       5567777655.899**********99999998763348888887754 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.98
                     Abhydrolase_5  94 delselskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnhagf 143
                                        +l++ s+++l   + +D+  +++   ++ +   +++++v  e   ha f
  gi|300713051|ref|YP_003738863.1| 202 SDLEAISVPTLICHSVHDQACPFELTAEKLHEGIENAELVRFEESEHALF 251
                                       56888899999999999999999999999999999999999999999988 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.13   1.4e+02       3      18 ..      19      34 ..      18      41 .. 0.86
   2 ?   10.6   0.0   0.00031      0.33      90     131 ..      86     127 ..      68     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.13
                             PGAP1  3 sGipVlFvpGnagsyk 18
                                      sG p++Fv+G   s++
  gi|300713051|ref|YP_003738863.1| 19 SGTPIVFVHGWPLSHR 34
                                      79********887776 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00031
                             PGAP1  90 ptsviliGHSmGGivaraaltlknyikqsvntiltla..sPhal 131
                                        ++v+l G SmGG v   +  + ++  ++v +++ ++  sP+ +
  gi|300713051|ref|YP_003738863.1|  86 LEDVVLAGFSMGGGVV--TRYMGRHNGDHVGKVVMIGaaSPVLA 127
                                       579********97665..34445666788888877754478765 PP

>> VirJ  Bacterial virulence protein (VirJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.2e-05     0.044      25     111 ..      43     132 ..      37     142 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.2e-05
                              VirJ  25 lqkqgvpvvGvdsLryf.....WsertPeevaaDldrlikkyakrwkkkkvvliGysfGaDvlPaaynkLkaatrdk 96 
                                       l ++g++ +G+d   y      Wse + + +a+Dl++++++ +     + vvl G+s+G  v+   + + +  +  k
  gi|300713051|ref|YP_003738863.1|  43 LPREGIQCIGIDLRGYGqsskpWSEYDFDMFADDLKNVLDELD----LEDVVLAGFSMGGGVVTRYMGRHNGDHVGK 115
                                       6678999999985555244444888899999999999998765....569************999888887777777 PP

                              VirJ  97 vklvslla..lskkadf 111
                                       v +++  +  l+kk+df
  gi|300713051|ref|YP_003738863.1| 116 VVMIGAASpvLAKKSDF 132
                                       77776544335555555 PP

>> DUF1057  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.6e-05     0.038      36     116 ..      20      99 ..       4     125 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
                           DUF1057  36 Gt.vvalhGsPGshnDfkYirskleelkiRligvnyPGfefvtgylgqkytnaeRnsyskalleelelkgklillgh 111
                                       Gt +v +hG P sh+ f Y   +l ++ i  ig++  G+ + ++    +y      +  k +l+el+l++ ++l g 
  gi|300713051|ref|YP_003738863.1|  20 GTpIVFVHGWPLSHRMFEYQYIQLPREGIQCIGIDLRGYGQSSKPWS-EYDFDMFADDLKNVLDELDLED-VVLAGF 94 
                                       5536778*******************************998765433.3333333334456788888865.788899 PP

                           DUF1057 112 sRGce 116
                                       s G+ 
  gi|300713051|ref|YP_003738863.1|  95 SMGGG 99 
                                       99885 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012      0.13      34      77 ..     208     252 ..     180     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
                     Abhydrolase_4  34 aapvLllqnerDpaTPyeg.akklakalggavlvtvegeGHgala 77 
                                       ++p+L+  + +D a+P+e  a+kl++ +++a+lv  e++ H  + 
  gi|300713051|ref|YP_003738863.1| 208 SVPTLICHSVHDQACPFELtAEKLHEGIENAELVRFEESEHALFY 252
                                       589**************963789***************9998765 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0033       3.5      32      93 ..      63     125 ..      59     158 .. 0.85
   2 ?    3.3   0.0     0.063        67     111     148 ..     205     244 ..     168     265 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0033
                                       C--TS--HHHHHHHHHHHHHC-S.TTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGG CS
                     Ser_hydrolase  32 adwlkPdledWvaaleaaveaae.ekvvlvAHSlgclavlhaaelqlakkvagalLVapadve 93 
                                       + w++ d++  ++ l++ ++++  e+vvl   S+g  +v +++ ++  ++v +++++  a++ 
  gi|300713051|ref|YP_003738863.1|  63 KPWSEYDFDMFADDLKNVLDELDlEDVVLAGFSMGGGVVTRYMGRHNGDHVGKVVMIGAASPV 125
                                       679999999999*******999835699999************99************999984 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.063
                                       SHHCCHCEEEEETTBTTC-HH.HHHHHHHHCT.-EEEEET CS
                     Ser_hydrolase 111 eklpfpslvvaSenDpyvsfe.eaeelaeawg.aelvdlg 148
                                       e+ ++p+l+  S  D++++fe  ae+l e ++ aelv  +
  gi|300713051|ref|YP_003738863.1| 205 EAISVPTLICHSVHDQACPFElTAEKLHEGIEnAELVRFE 244
                                       4566777777777777777773455555554324455554 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.6   6.3e+02      11      24 ..      20      33 ..      15      45 .. 0.79
   2 ?    9.9   0.0   0.00039      0.41      83     140 ..      71     120 ..      66     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.6
                            DUF915 11 eiPtifihGyggta 24
                                       +P++f+hG+  ++
  gi|300713051|ref|YP_003738863.1| 20 GTPIVFVHGWPLSH 33
                                      79*******86555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00039
                            DUF915  83 kkqakwlkkvlseLkkkYnikkfnavGhSmGglaltsYleeyaddkslPqlkklvtig 140
                                       + +a  lk+vl+eL     ++ + + G+SmGg  +t+Y+   + d+    + k+v ig
  gi|300713051|ref|YP_003738863.1|  71 DMFADDLKNVLDEL----DLEDVVLAGFSMGGGVVTRYMGRHNGDH----VGKVVMIG 120
                                       55666777777777....5789999**************8877665....56666665 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00013      0.14      27     121 ..      47     140 ..      35     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
                                       EEEEEEECSTTSTSHHHCTT..CHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC.T-SEEEEEEE CS
                      Thioesterase  27 vvevlavqlpgrerdepple..sieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesq.Glavkslfli 100
                                        ++ +++ l+g++++++p +  +++  a+ + + l +   e  ++l+G+S+Gg +   v+r + +  G  v  +++i
  gi|300713051|ref|YP_003738863.1|  47 GIQCIGIDLRGYGQSSKPWSeyDFDMFADDLKNVLDELDLE-DVVLAGFSMGGGV---VTRYMGRHnGDHVGKVVMI 119
                                       56677777888875555554125677888888888888888.99*********97...889898889********** PP

                                       SCCCCCCHHCHHCCCHTTHHT CS
                      Thioesterase 101 dssapseteaqeasrraedee 121
                                       ++  p+  ++ + ++  ++++
  gi|300713051|ref|YP_003738863.1| 120 GAASPVLAKKSDFPEGVDEDA 140
                                       **9998866665555555554 PP

>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00048      0.51      92     105 ..      20      33 ..       4      36 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00048
                               EHN  92 aiPllllhGWPgsf 105
                                        +P++++hGWP s 
  gi|300713051|ref|YP_003738863.1|  20 GTPIVFVHGWPLSH 33 
                                       48*********996 PP

>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032      0.34      95     147 ..      69     122 ..      63     142 .. 0.86
   2 ?   -2.7   0.0       5.4   5.7e+03      44      91 ..     211     263 ..     205     264 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
                   Isochorismatase  95 rfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGy..evvvvsDA 147
                                        f++f   dl+++L+el  +++vlaG+++  +V +  +  ++ ++  +vv++  A
  gi|300713051|ref|YP_003738863.1|  69 DFDMF-ADDLKNVLDELDLEDVVLAGFSMGGGVVTRYMGRHNGDHvgKVVMIGAA 122
                                       58999.66*********************99999988888887777777777766 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.4
                   Isochorismatase  44 viftrdvhe.....leevkgdlderkaaphfkpgttgaelvpelaplegdvvv 91 
                                       ++++  vh+       + ++  +  ++a+ ++ ++++++l+ e + + ++++v
  gi|300713051|ref|YP_003738863.1| 211 TLICHSVHDqacpfELTAEKLHEGIENAELVRFEESEHALFYEEREKLNEKLV 263
                                       55555555544555445555556666667777777777777776766677666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1870.13
//
Query:       gi|300713052|ref|YP_003738864.1|  [L=234]
Description: hypothetical protein HacjB3_18668 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00029   20.6   0.7        6.9    6.6   0.0    3.4  3  HSBP1            Heat shock factor binding protein 1
    0.00069   19.3   1.4    0.00069   19.3   1.4    1.5  1  Filament         Intermediate filament protein
     0.0024   17.8   2.1       0.29   11.1   0.9    2.8  2  Prefoldin_2      Prefoldin subunit
     0.0033   17.1   0.6     0.0033   17.1   0.6    2.2  2  Lebercilin       Ciliary protein causing Leber congenital ama
     0.0037   16.2   2.0     0.0044   15.9   1.6    1.3  1  Fmp27_WPPW       RNA pol II promoter Fmp27 protein domain
     0.0038   17.1   2.3     0.0038   17.1   2.3    2.0  1  PKcGMP_CC        Coiled-coil N-terminus of cGMP-dependent pro
     0.0049   16.9   0.3       0.08   13.0   0.0    2.7  2  NapD             NapD protein
     0.0053   16.8   1.5     0.0053   16.8   1.5    2.2  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
     0.0055   16.8   2.3       0.01   16.0   2.3    1.4  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
      0.006   15.9   0.6      0.006   15.9   0.6    1.8  2  MPS2             Monopolar spindle protein 2
      0.006   17.0   1.6      0.006   17.0   1.6    2.1  2  Spectrin         Spectrin repeat
     0.0089   17.1   1.1        8.2    7.6   0.2    2.8  2  SOGA             Protein SOGA
      0.009   16.2   7.0      0.033   14.4   5.5    2.7  2  ABC_tran_CTD     ABC transporter C-terminal domain
  ------ inclusion threshold ------
      0.014   15.2   3.8      0.015   15.1   2.6    1.6  2  SKA1             Spindle and kinetochore-associated protein 1
      0.015   15.7   1.6        3.5    8.1   0.1    2.9  2  FlaC_arch        Flagella accessory protein C (FlaC)
      0.015   14.6   0.6      0.015   14.6   0.6    1.6  1  FAM76            FAM76 protein
       0.02   15.0   0.4       0.11   12.6   0.2    2.2  2  Med9             RNA polymerase II transcription mediator com
      0.022   15.1   1.1      0.031   14.6   0.2    1.7  1  DUF641           Plant protein of unknown function (DUF641)
      0.023   14.8   1.9      0.041   14.0   0.9    1.7  2  Spore_III_AB     Stage III sporulation protein AB (spore_III_
      0.028   14.5   0.3      0.099   12.7   0.3    2.0  1  PspB             Phage shock protein B
      0.029   14.5   1.7      0.029   14.5   1.7    1.9  2  ADIP             Afadin- and alpha -actinin-Binding
       0.03   14.5   2.8       0.03   14.5   2.8    2.2  1  ATG16            Autophagy protein 16 (ATG16)
      0.037   12.7   7.6       0.62    8.6   0.6    2.0  2  AAA_13           AAA domain
      0.041   14.7   1.4       0.13   13.0   0.1    2.3  2  DUF3349          Protein of unknown function (DUF3349)
      0.076   12.9   2.9       0.39   10.7   0.5    2.5  2  Prefoldin        Prefoldin subunit
      0.077   13.3   6.0       0.69   10.3   0.7    3.0  3  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.08   12.3   4.6        0.2   10.9   4.6    1.7  1  YPEB             YpeB sporulation
      0.084   11.4   1.0       0.13   10.7   1.0    1.4  1  Herpes_UL6       Herpesvirus UL6 like
       0.09   12.6   2.2        0.2   11.5   0.4    2.2  2  DivIC            Septum formation initiator
       0.15   11.8   2.6        5.3    6.7   0.3    2.3  2  SHE3             SWI5-dependent HO expression protein 3
       0.15   12.1   0.2       0.15   12.1   0.2    2.2  2  CCD              WisP family C-Terminal Region
       0.15   10.9   6.0       0.26   10.1   4.9    1.8  1  Spc7             Spc7 kinetochore protein
       0.18   11.5   1.0       0.49   10.1   0.2    2.0  2  RPW8             Arabidopsis broad-spectrum mildew resistance
       0.25   12.0   7.4       0.57   10.8   4.4    2.9  2  SlyX             SlyX
       0.29   11.2   7.2       0.53   10.3   5.6    2.2  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
        0.3   11.1   2.8       0.79    9.8   0.6    2.4  2  DUF1664          Protein of unknown function (DUF1664)
       0.33   11.3  12.2        0.4   11.0   2.4    2.9  2  HalX             HalX domain
       0.37   11.3   2.7         10    6.7   0.2    2.9  2  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.39   11.5   3.5        9.3    7.0   0.1    3.2  3  Occludin_ELL     Occludin homology domain
       0.61    9.5   7.9      0.088   12.3   3.6    1.7  2  HMMR_N           Hyaluronan mediated motility receptor N-term
       0.67    9.5   7.4        1.9    8.0   0.4    3.0  3  PspA_IM30        PspA/IM30 family
       0.69   10.4   5.1       0.88   10.1   0.7    2.8  2  DUF16            Protein of unknown function DUF16
       0.72    9.8   5.2        6.4    6.7   0.6    2.5  2  MIP-T3_C         Microtubule-binding protein MIP-T3 C-termina
        1.1    9.4  10.9       0.54   10.5   8.0    2.0  2  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
        1.6    8.9  16.0       0.11   12.6   9.5    2.2  3  Tropomyosin_1    Tropomyosin like
        1.7    8.7   9.2       0.23   11.6   1.8    2.6  3  DUF848           Gammaherpesvirus protein of unknown function
        1.9    7.9   7.2        1.3    8.4   1.1    2.5  3  Not3             Not1 N-terminal domain, CCR4-Not complex com
        2.7    8.0   9.6       0.28   11.2   1.4    2.7  3  Cep57_CLD        Centrosome localisation domain of Cep57
        3.3    7.0   8.9        4.4    6.6   8.7    1.5  1  DUF4407          Domain of unknown function (DUF4407)
        3.3    8.2   6.0        3.2    8.2   1.2    2.9  2  Snapin_Pallidin  Snapin/Pallidin
        3.7    8.0   8.9       0.94   10.0   2.1    2.6  2  DUF4140          N-terminal domain of unknown function (DUF41
        5.6    6.4  12.4        3.4    7.1   1.0    2.5  2  MscS_porin       Mechanosensitive ion channel porin domain


Domain annotation for each model (and alignments):
>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.12        40      25      43 ..      26      44 ..      24      46 .. 0.84
   2 ?    6.5   0.0     0.022       7.6      34      47 ..      49      62 ..      48      66 .. 0.83
   3 ?    6.6   0.0      0.02       6.9      26      49 ..      73      96 ..      70      98 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.12
                             HSBP1 25 ilsriDdMssriDdLEksi 43
                                      + ++++ ++ r+++LE+ i
  gi|300713052|ref|YP_003738864.1| 26 VWEQLETLTDRVEELEAEI 44
                                      567889999*******998 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.022
                             HSBP1 34 sriDdLEksiadlm 47
                                       riD+LE++++++ 
  gi|300713052|ref|YP_003738864.1| 49 DRIDELEAQLTEYK 62
                                      59*******99875 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.02
                             HSBP1 26 lsriDdMssriDdLEksiadlmtq 49
                                       +ri d +   D+LE+++++  t+
  gi|300713052|ref|YP_003738864.1| 73 RGRITDVEDQTDELETTLQETPTE 96
                                      58****************998765 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.4     2e-06   0.00069     195     281 ..       7      93 ..       3      99 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2e-06
                                       XXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          Filament 195 skleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeel 271
                                       +k +   +  ++++ +l+s+ e+++ l  ++++le+e+e      + leaql+e +    +e ++++  ++++e++ 
  gi|300713052|ref|YP_003738864.1|   7 TKSTATDQPTTTDEPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQT 83 
                                       5666777778888999************************************************************* PP

                                       HHHHHHHHHH CS
                          Filament 272 aeireemarq 281
                                        e+  +++  
  gi|300713052|ref|YP_003738864.1|  84 DELETTLQET 93 
                                       9999988875 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.9   0.00083      0.29      62      95 ..      28      61 ..      17      65 .. 0.57
   2 ?    4.8   0.0     0.079        27       7      30 ..      69      92 ..      66     104 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00083
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                       Prefoldin_2 62 evkeeLeerketlekeiktlekqleklekeleel 95
                                      e +e+L +r e+le+ei+   +++++le++l+e 
  gi|300713052|ref|YP_003738864.1| 28 EQLETLTDRVEELEAEIECKDDRIDELEAQLTEY 61
                                      3345555555555555555555555555555554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.079
                                      HHHHHHHHHHHHHHHHHHHHHHHH CS
                       Prefoldin_2  7 fqqlqqqlqqlaqqikqletqlke 30
                                      f++ + ++++++ q ++let l+e
  gi|300713052|ref|YP_003738864.1| 69 FADVRGRITDVEDQTDELETTLQE 92
                                      666666666666666666666666 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.6   9.6e-06    0.0033     120     182 ..      31      93 ..      24      99 .. 0.94
   2 ?    0.5   0.1       1.2   4.1e+02     134     177 ..     107     150 ..      96     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.6e-06
                        Lebercilin 120 eeLqkkLeeleakleekeekikeLerkleleeksfrrqlaaekkktkeaqeevkalqeeierl 182
                                       e+L+ ++eelea++e k+ +i+eLe +l   ++    + a  + ++ ++++++++l++++++ 
  gi|300713052|ref|YP_003738864.1|  31 ETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQET 93 
                                       89*******************************************************999975 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.2
                        Lebercilin 134 eekeekikeLerkleleeksfrrqlaaekkktkeaqeevkalqe 177
                                        +++ +   Ler + l e   +r+l++ +++++ + ++v++  e
  gi|300713052|ref|YP_003738864.1| 107 SQTTTTETPLERICTLPEHVTDRELTTNQQRARFIAQDVQNYAE 150
                                       45555566799999999999999999999999999999888765 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.6   1.3e-05    0.0044     172     283 ..      29     141 ..      23     152 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-05
                        Fmp27_WPPW 172 qkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesseeees 248
                                       q e l +R+eele++ie ++++++ele +  + ++   +e+ +++  i +++++ + let+l+++ +++++ + ee+
  gi|300713052|ref|YP_003738864.1|  29 QLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQETPTETTTVAAEET 105
                                       7899****************************999999999999999999999999999999999999886555555 PP

                        Fmp27_WPPW 249 kskelsaastsesfselde.lasseesaseFknRFi 283
                                        s+++++++  e++++l e ++  e  +++ + RFi
  gi|300713052|ref|YP_003738864.1| 106 GSQTTTTETPLERICTLPEhVTDRELTTNQQRARFI 141
                                       444444444444444443333333334444455555 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   2.3   1.1e-05    0.0038       9      31 ..      36      58 ..      34      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-05
                         PKcGMP_CC  9 RIRELEkrlaekdeEIqELrskL 31
                                      R+ ELE+ +++kd+ I EL ++L
  gi|300713052|ref|YP_003738864.1| 36 RVEELEAEIECKDDRIDELEAQL 58
                                      899*****************999 PP

>> NapD  NapD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0         2   6.9e+02       8      26 ..      44      62 ..      44      76 .. 0.84
   2 !   13.0   0.0   0.00023      0.08      13      57 ..     178     222 ..     174     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 2
                              NapD  8 Vqarperlaavkaalaalp 26
                                      ++++ +r++++ a+l++ +
  gi|300713052|ref|YP_003738864.1| 44 IECKDDRIDELEAQLTEYK 62
                                      6899999999999998764 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00023
                              NapD  13 erlaavkaalaalpgvEvhasdeegklVvviEaesedeladtiea 57 
                                       +++a+v + l++l + +v +++ +gk  vviE+e +d+ +d+ ++
  gi|300713052|ref|YP_003738864.1| 178 QTVARVMNFLEKLGKDDVEQTKRRGKKLVVIEKEAADRYHDRCDR 222
                                       67899********************************99998765 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.5   1.5e-05    0.0053      58     126 ..      22      90 ..      16      93 .. 0.91
   2 ?   -0.5   0.5       3.4   1.2e+03      20      38 ..     134     152 ..     125     218 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-05
                        TPR_MLP1_2  58 elqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQl 126
                                       +l+++ e+l++l+++++el+ae e     ++e e++++e k    +e ++++ ri+d+++q + L + l
  gi|300713052|ref|YP_003738864.1|  22 TLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTL 90 
                                       6788899*****************************************************977666555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.4
                        TPR_MLP1_2  20 aeaklqklqedlekqaeia 38 
                                        +++++ + +d+++ ae a
  gi|300713052|ref|YP_003738864.1| 134 NQQRARFIAQDVQNYAEKA 152
                                       4444444444444444433 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.3     3e-05      0.01      75     182 ..       7     129 ..       2     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3e-05
                           UPF0242  75 aklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae..............dfeelk 137
                                        k t++d++ +t e +l+ + e+ e L +++++ e e+e    +  +L+ +l + ++              d+e++ 
  gi|300713052|ref|YP_003738864.1|   7 TKSTATDQPTTTDEPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRfagsefadvrgritDVEDQT 83 
                                       45566677777778888888888888888888888888888888888888888888888888888999999999999 PP

                           UPF0242 138 leleeqLaekqellqe.yqetieeqrsvlekrqdqieqLeskVrDl 182
                                        ele +L+e  +   +  +e++ +q  + e   ++i  L   V D+
  gi|300713052|ref|YP_003738864.1|  84 DELETTLQETPTETTTvAAEETGSQTTTTETPLERICTLPEHVTDR 129
                                       9999999998766655156778899999999999999999999886 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.6   1.7e-05     0.006     132     192 ..       4      63 ..       1      92 [. 0.86
   2 ?   -0.3   0.1       1.5   5.2e+02      94     155 ..     141     202 ..     127     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-05
                              MPS2 132 stprkkilldllkkqesPeklrrsnrklkaLevrveslkdELeakdevlrekeRelleLkk 192
                                       +t++k    d+   +++P+ l++  ++l +L  rve+l+ E+e kd+ + e e +l+e k+
  gi|300713052|ref|YP_003738864.1|   4 TTTTKSTATDQPTTTDEPT-LKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKR 63 
                                       5666665666677777775.569999*******************************9886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.5
                              MPS2  94 ifedvDgieaekisslelkeevkrlvvlssknsekdslstprkkilldllkkqesPeklrrs 155
                                       i++dv    ++  + l+l++++   v+  +++s++ +++ +r  ++l++l+k++  ++ rr 
  gi|300713052|ref|YP_003738864.1| 141 IAQDVQNYAEKAPAGLVLDSQTIAKVITAAEGSKPHTQTVARVMNFLEKLGKDDVEQTKRRG 202
                                       67788888888888889999988888899999999999999999999999988776666543 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.6   1.7e-05     0.006      30      98 ..      24      92 ..      10      96 .. 0.77
   2 ?   -1.3   0.0       8.7     3e+03      30      52 ..     192     214 ..     170     224 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.7e-05
                                      SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
                          Spectrin 30 gkdleevqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaae 98
                                       +  e++++l ++ ++leae++ +++r+++l+++ ++     +s+ ++++ r+ +++++ +eL+++++e
  gi|300713052|ref|YP_003738864.1| 24 KSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQE 92
                                      333455566666999999999999999999987777775545788899****************99987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 8.7
                                       SSSHHHHHHHHHHHHHHHHHHHH CS
                          Spectrin  30 gkdleevqallkkhkaleaelaa 52 
                                         d+e++++  kk+  +e+e a+
  gi|300713052|ref|YP_003738864.1| 192 KDDVEQTKRRGKKLVVIEKEAAD 214
                                       45555555555555555555544 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.027       9.2      63      91 ..      15      43 ..       1      46 [. 0.71
   2 ?    7.6   0.2     0.024       8.2      10      65 ..      63     114 ..      50     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.027
                              SOGA 63 keaelkeeLklarlqineLsgkvvkLqve 91
                                       +++ +  Lk++ +q ++L  +v +L+ e
  gi|300713052|ref|YP_003738864.1| 15 PTTTDEPTLKSVWEQLETLTDRVEELEAE 43
                                      23344557*******************98 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.024
                              SOGA  10 qfveeEaeLlrrslseleeenkqlteeLnkyksklgeeessleeeeeassdsskea 65 
                                       +f+  E +  r +++++e++ ++l++ L+   +++ ++ ++++    +s+ +++e+
  gi|300713052|ref|YP_003738864.1|  63 RFAGSEFADVRGRITDVEDQTDELETTLQETPTETTTVAAEET----GSQTTTTET 114
                                       5777777778999***************987766666655443....344444444 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   5.5   9.5e-05     0.033       9      62 ..      36      88 ..      23      93 .. 0.87
   2 ?    5.5   0.0     0.057        20       9      55 ..      68     114 ..      62     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.5e-05
                      ABC_tran_CTD  9 eleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelye 62
                                      + eeleaeIe  + +i elea+l +   ++   ++a++  +++++e++ +el+ 
  gi|300713052|ref|YP_003738864.1| 36 RVEELEAEIECKDDRIDELEAQLTEYKRFAG-SEFADVRGRITDVEDQTDELET 88
                                      5799********************8765533.68****************9986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.057
                      ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleelea 55 
                                       e++ +  +I   E +  ele+ l++    ++  +  e+  + ++ e+
  gi|300713052|ref|YP_003738864.1|  68 EFADVRGRITDVEDQTDELETTLQETPTETTTVAAEETGSQTTTTET 114
                                       778888999999********999987754555555555555555555 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.6   4.4e-05     0.015      13     138 ..      11     133 ..       4     147 .. 0.78
   2 ?   -1.7   0.0       6.3   2.2e+03      70     110 ..     145     188 ..     133     213 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.4e-05
                                       ...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXX CS
                              SKA1  13 ainqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqek.lqhlkenlpshlpkktaas 88 
                                       a++q  ++ +++l+ + +++++l++ +++l++e++ + + i++l++++ +      + +    + +  ++ + ++++
  gi|300713052|ref|YP_003738864.1|  11 ATDQPTTTDEPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYK----RfAGSEFADVRGRITDVEDQT 83 
                                       56777788899**************************999999996555555....545555555555556556666 PP

                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-S--SS----HHHHTT CS
                              SKA1  89 saeeskssspeeeeeteskkekeeeaekakkpkkreikevayiteeefes 138
                                        + e++ ++++ e++t +++e  +++ ++++p +r +   + +t++e+++
  gi|300713052|ref|YP_003738864.1|  84 DELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPEHVTDRELTT 133
                                       555555566666666888888999999999999*************9975 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 6.3
                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...X CS
                              SKA1  70 lqhlkenlpshlpkktaassaeeskssspeeeeeteskke...k 110
                                       +q+ +e+ p++l  + ++  ++ ++++ ++ +++t +      +
  gi|300713052|ref|YP_003738864.1| 145 VQNYAEKAPAGLVLDSQTIAKVITAAEGSKPHTQTVARVMnflE 188
                                       56666666666655555544444444444433333333334441 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.065        23      15      37 ..      22      44 ..      17      49 .. 0.83
   2 ?    8.1   0.1      0.01       3.5       1      38 [.      50      91 ..      50      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.065
                         FlaC_arch 15 eletvkkeneelsksveelkenV 37
                                      +l++v +++e l + veel+ ++
  gi|300713052|ref|YP_003738864.1| 22 TLKSVWEQLETLTDRVEELEAEI 44
                                      68889999999999999999877 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.01
                         FlaC_arch  1 ridelEnklsklst....eletvkkeneelsksveelkenVk 38
                                      ridelE +l + +     e++ v+  + +++++ +el+ + +
  gi|300713052|ref|YP_003738864.1| 50 RIDELEAQLTEYKRfagsEFADVRGRITDVEDQTDELETTLQ 91
                                      8********9998888889*****************999876 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.6   4.5e-05     0.015     209     287 ..      18      96 ..       1     108 [. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.5e-05
                             FAM76 209 sldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekki 285
                                       + +++      +++ L +++++l+ ++e kd  + e + ++te k    ++ +++r +++++e +++e  ++l+++ 
  gi|300713052|ref|YP_003738864.1|  18 TDEPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQETP 94 
                                       445555555567899**********************************************9999998888888765 PP

                             FAM76 286 re 287
                                       +e
  gi|300713052|ref|YP_003738864.1|  95 TE 96 
                                       54 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   0.00031      0.11      38      79 ..      23      64 ..      21      65 .. 0.91
   2 ?   -0.7   0.0       4.7   1.6e+03      22      36 ..      77      91 ..      69      99 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00031
                              Med9 38 arelirelpgidrsveeqeaeieeleeqlakKrelLkkyknr 79
                                       +++ ++l+ +   vee eaeie ++++++  ++ L++yk++
  gi|300713052|ref|YP_003738864.1| 23 LKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRF 64
                                      588889999999***************************985 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 4.7
                              Med9 22 kdletktgelrhkLk 36
                                      +d+e +t+el + L+
  gi|300713052|ref|YP_003738864.1| 77 TDVEDQTDELETTLQ 91
                                      455555555555444 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   9.1e-05     0.031      83     120 ..      26      63 ..       3      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.1e-05
                            DUF641  83 qrsllktyeitvkkleaelkakdseieeLkekLeeaek 120
                                         + l+t+  +v++leae++ kd  i+eL+++L+e ++
  gi|300713052|ref|YP_003738864.1|  26 VWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKR 63 
                                       45678999999**********************99876 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.9   0.00012     0.041      27     143 ..      27     152 ..      22     156 .. 0.84
   2 ?   -1.0   0.0       4.8   1.7e+03     101     117 ..     189     205 ..     165     226 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.00012
                                       HHHHHHHHHHHHHHHHHHHH-SS-HHHHHHHHHHCS-TTHHHH.........HHHHHHHHH.STSS-HHHHHHHHHH CS
                      Spore_III_AB  27 lkeleelkralellegeirygatpLpealeklaeksesplsef.........feevaerleekegesfeeaweeave 94 
                                        ++le l   +e le+ei++    + e+ ++l e  +   sef         +e+  ++le+  +e+ +e    a+e
  gi|300713052|ref|YP_003738864.1|  27 WEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFadvrgritdVEDQTDELETTLQETPTETTTVAAE 103
                                       58999**********************999999555553344444477755556666667777999999999999** PP

                                       HHGGGS---HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHH CS
                      Spore_III_AB  95 kllkklaLkkedkeilkelgeslgysdregqlkalelaleeleeeieea 143
                                       ++ +++  ++  +e +++l e+    +++++++  + + +++++  e+a
  gi|300713052|ref|YP_003738864.1| 104 ETGSQTTTTETPLERICTLPEHVTDRELTTNQQRARFIAQDVQNYAEKA 152
                                       ******************************************9999987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.8
                                       ---HHHHHHHHHHHHHH CS
                      Spore_III_AB 101 aLkkedkeilkelgesl 117
                                       +L k+d e  k+ g++l
  gi|300713052|ref|YP_003738864.1| 189 KLGKDDVEQTKRRGKKL 205
                                       34445555555555554 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   0.00029     0.099      27      64 ..       7      44 ..       5      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00029
                              PspB 27 skkkrskglsaedekrLeellekAekleeRietLEriL 64
                                      +k+ + ++ + +de +L++++e+ e+l++R+e LE+ +
  gi|300713052|ref|YP_003738864.1|  7 TKSTATDQPTTTDEPTLKSVWEQLETLTDRVEELEAEI 44
                                      677777788899***********************855 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.7   8.3e-05     0.029      53     117 ..      28      92 ..      25     107 .. 0.84
   2 ?    0.2   0.5         2     7e+02      74     103 ..      81     110 ..      71     149 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.3e-05
                              ADIP  53 eqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekee 117
                                       eq e+l++++++leaeie +  +i+ l++ql++++r + +  a+ r   ++++++++ l ++ +e
  gi|300713052|ref|YP_003738864.1|  28 EQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQE 92 
                                       789********************************988888888887777777777777766666 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 2
                              ADIP  74 skierlktqleqlerelalvqakerqlekk 103
                                        +++ l+t l+++ +e+++v a+e+  +++
  gi|300713052|ref|YP_003738864.1|  81 DQTDELETTLQETPTETTTVAAEETGSQTT 110
                                       455667777777777776544444433322 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.8   8.8e-05      0.03     102     162 ..      28      88 ..      20      95 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.8e-05
                             ATG16 102 qrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsa 162
                                       ++l +l++ +++le++++ ++ r++elea+ ++ ++   +  + +r++ + v+d+ DEl++
  gi|300713052|ref|YP_003738864.1|  28 EQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELET 88 
                                       699********************************************************87 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.6    0.0018      0.62     429     470 ..      20      61 ..       2      68 .. 0.55
   2 ?    8.3   1.4    0.0023      0.78      88     210 ..      66     186 ..      63     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
                            AAA_13 429 ekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkaf 470
                                       e  lk   ++l++l ++++eLe++++ +   ++e++ +L+++
  gi|300713052|ref|YP_003738864.1|  20 EPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEY 61 
                                       444455555555555555555555555555555555555554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0023
                            AAA_13  88 Geesiekqekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfke 164
                                       G+e ++ + +i+  +++ ++le+ l+++  + +   +e++  +++ +++  + i +  +   +++l+ ++++++f +
  gi|300713052|ref|YP_003738864.1|  66 GSEFADVRGRITDVEDQTDELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPEHVTDRELTTNQQRARFIA 142
                                       77778899999999999999999987776666666666666666666777777989889999999*999******** PP

                            AAA_13 165 rllkelkkknrkaaellsdeelkakletvesenlpelaplslssid 210
                                       ++++++++k  ++a l+ d++  ak+ t+ + ++p  +++    + 
  gi|300713052|ref|YP_003738864.1| 143 QDVQNYAEK--APAGLVLDSQTIAKVITAAEGSKPHTQTVARVMNF 186
                                       *******97..78888888888888777777777766665422333 PP

>> DUF3349  Protein of unknown function (DUF3349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       6.7   2.3e+03      65      72 ..      75      82 ..      43     120 .. 0.55
   2 ?   13.0   0.1   0.00038      0.13      41      90 ..     140     191 ..     122     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 6.7
                                      HHHHHCTS CS
                           DUF3349 65 litkvtee 72
                                       it+v ++
  gi|300713052|ref|YP_003738864.1| 75 RITDVEDQ 82
                                      33333332 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00038
                                       HHHHHHHHH--...SSS.BSHHHCHHHHHHHCTS---HHHHHHHHHHHHTTT CS
                           DUF3349  41 evaeelvaeaa..eadeavdeedieelitkvteeepseedvarVaarLaagg 90 
                                        +a+++ + a+   a   +d++ i+++it+   ++p+ + varV + L++ g
  gi|300713052|ref|YP_003738864.1| 140 FIAQDVQNYAEkaPAGLVLDSQTIAKVITAAEGSKPHTQTVARVMNFLEKLG 191
                                       3555555555323667789***************************999866 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5    0.0011      0.39      84     115 ..      28      59 ..      20      63 .. 0.86
   2 ?    1.7   0.1      0.68   2.3e+02      85     111 ..      75     101 ..      67     109 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0011
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                         Prefoldin  84 kkleelekqlekleeeleklkdqittleanla 115
                                       ++le+l++ +e+le+e+e + d+i++lea+l 
  gi|300713052|ref|YP_003738864.1|  28 EQLETLTDRVEELEAEIECKDDRIDELEAQLT 59 
                                       689999999*****************999985 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.68
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                         Prefoldin  85 kleelekqlekleeeleklkdqittle 111
                                       +++++e+q ++le  l++  ++ tt+ 
  gi|300713052|ref|YP_003738864.1|  75 RITDVEDQTDELETTLQETPTETTTVA 101
                                       555566666666666666555555555 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.7     0.002      0.69      58      95 ..      20      58 ..       1      59 [. 0.77
   2 ?    6.8   0.4     0.024       8.3      43      82 ..      51      91 ..      49     101 .. 0.86
   3 ?   -1.5   0.0       9.2   3.2e+03      47      55 ..     184     192 ..     160     218 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.002
                           BLOC1_2 58 e.elqpylqqidqiekqvteLeeavseLDeyskeLEakf 95
                                      e +l++  +q++ + ++v+eLe+ ++  D  + eLEa++
  gi|300713052|ref|YP_003738864.1| 20 EpTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQL 58
                                      447888899999999999999999999999999999886 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.024
                           BLOC1_2 43 aaslekkleklnekye.elqpylqqidqiekqvteLeeavs 82
                                      +++le++l ++++    e++    +i ++e+q++eLe++ +
  gi|300713052|ref|YP_003738864.1| 51 IDELEAQLTEYKRFAGsEFADVRGRITDVEDQTDELETTLQ 91
                                      6778888888888777799999***************9976 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 9.2
                           BLOC1_2  47 ekkleklne 55 
                                        ++lekl +
  gi|300713052|ref|YP_003738864.1| 184 MNFLEKLGK 192
                                       333333332 PP

>> YPEB  YpeB sporulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.6   0.00059       0.2      99     210 ..       2     113 ..       1     209 [. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00059
                              YPEB  99 syslakkdldgepLteeeyktLeeLyeqakelekeLrkvqekvaegglrwgelekalas..eqekadntiidgnfkt 173
                                       s +++ k+++ ++ t  +  tL++  eq ++l+++ ++++++++ ++ r+ ele +l++    + ++ + + g+ ++
  gi|300713052|ref|YP_003738864.1|   2 SDTTTTKSTATDQPTTTDEPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEykRFAGSEFADVRGRITD 78 
                                       6778888889999999999**************************************9876788888899999**** PP

                              YPEB 174 vekevekypeliydGpfsdhlekktpkglsgkevsee 210
                                       ve + +++ ++  + p+ + +     +++++++ + e
  gi|300713052|ref|YP_003738864.1|  79 VEDQTDELETTLQETPTETTT--VAAEETGSQTTTTE 113
                                       ********9999888884444..33333333333333 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.0   0.00038      0.13     364     432 ..      20      89 ..       2     149 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
                        Herpes_UL6 364 nsvikcleeqineqfdtiekLkkenelllkklkelekeLerlreeakk.eakarevdlltsstdaslenl 432
                                       +   k++ eq++++ d +e+L++e e    ++ ele +L+++++ a    a+ r   +  ++++++le+ 
  gi|300713052|ref|YP_003738864.1|  20 EPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSeFADVRGRITDVEDQTDELETT 89 
                                       556789999*********************************7766654233333223333333333333 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   0.00057       0.2      11      51 ..      22      62 ..      21      75 .. 0.87
   2 ?   -0.1   0.0       2.4   8.1e+02      18      43 ..      75     100 ..      69     105 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00057
                                      XXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
                             DivIC 11 fgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51
                                      ++k+ + ++  l   +++l+ae++ + ++++eLea++ ++k
  gi|300713052|ref|YP_003738864.1| 22 TLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYK 62
                                      577889999999999*********************99885 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.4
                                       HHHHHHHHHHHHHHHHHHHHHHHHHH CS
                             DivIC  18 aykqlkqeiaalqaelaklkaeneeL 43 
                                       ++ +++ + ++l+ +l++   e    
  gi|300713052|ref|YP_003738864.1|  75 RITDVEDQTDELETTLQETPTETTTV 100
                                       56678888888888888876666555 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.3     0.015       5.3      42      80 ..      25      63 ..       5      73 .. 0.88
   2 ?    5.1   0.1     0.048        17      67     108 ..      75     114 ..      71     122 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.015
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              SHE3 42 kflenlaslkhENdnLsslLkRKerrlkdlekelselke 80
                                      ++ e+l +l +  + L + ++ K+ r+ +le +l+e+k+
  gi|300713052|ref|YP_003738864.1| 25 SVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKR 63
                                      677999999999**********************99985 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.048
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH CS
                              SHE3  67 rlkdlekelselkesveelklekkqlkkrlenssasetelee 108
                                       r+ d+e++  el++  +e  +e++++    e++ ++ t++e 
  gi|300713052|ref|YP_003738864.1|  75 RITDVEDQTDELETTLQETPTETTTVAA--EETGSQTTTTET 114
                                       99***************99999988765..444444444444 PP

>> CCD  WisP family C-Terminal Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00043      0.15      72     106 ..       7      41 ..       1      50 [. 0.83
   2 ?    1.2   0.5         1   3.6e+02      56      87 ..      91     126 ..      77     156 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00043
                               CCD  72 ktrvkrdtpttppehplksvndqitkvtdavnnfq 106
                                             d ptt  e  lksv +q+  +td v++++
  gi|300713052|ref|YP_003738864.1|   7 TKSTATDQPTTTDEPTLKSVWEQLETLTDRVEELE 41 
                                       3445679***********************99876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 1
                               CCD  56 seapssttnatgntsgktrvkrdtp....ttppehp 87 
                                        e+p+ tt  + + +g      +tp     t peh 
  gi|300713052|ref|YP_003738864.1|  91 QETPTETTTVAAEETGSQTTTTETPleriCTLPEHV 126
                                       567777666655555555555555522224666664 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.9   0.00075      0.26     163     225 ..      28      93 ..      17     148 .. 0.42

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00075
                              Spc7 163 eeldellpeleeekaele...eeleklqeaaeelesidkeeLeelreelaelkaeieekkkelael 225
                                       e+l++l +++ee +ae+e   +++++l+++ +e +     e + +r ++++++ + +e+++ l+e 
  gi|300713052|ref|YP_003738864.1|  28 EQLETLTDRVEELEAEIEckdDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQET 93 
                                       222222222222222222000222222222222222333333333333333333333222222222 PP

>> RPW8  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2    0.0014      0.49      36      74 ..      22      60 ..       7      65 .. 0.89
   2 ?   -1.5   0.0       5.5   1.9e+03      26      43 ..      75      92 ..      69     111 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0014
                              RPW8 36 rLestleritPvvkeieklnkeldrpreeieeLkklLek 74
                                       L+s  e+++++ +++e+l++e++++++ i+eL+ +L++
  gi|300713052|ref|YP_003738864.1| 22 TLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTE 60
                                      6899999****************************9987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 5.5
                              RPW8 26 ksldfksilkrLestler 43
                                      + +d++ + ++Le tl++
  gi|300713052|ref|YP_003738864.1| 75 RITDVEDQTDELETTLQE 92
                                      556666677777777765 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.4    0.0017      0.57       2      53 ..      34      89 ..      33     106 .. 0.73
   2 ?   -0.9   0.0       7.4   2.5e+03      31      55 ..     129     153 ..     125     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0017
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHT-XXXXXX CS
                              SlyX  2 eerleeLEiklafqedtieeLndvvaeqqq....qidrlqrqlrllaerlkelees 53
                                       +r+eeLE ++   +d i+eL ++++e  +    + +  + ++  ++++  ele++
  gi|300713052|ref|YP_003738864.1| 34 TDRVEELEAEIECKDDRIDELEAQLTEYKRfagsEFADVRGRITDVEDQTDELETT 89
                                      69*************************98733334555555555555555555555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 7.4
                                       HHHHHHHHHHHHHHHT-XXXXXXXX CS
                              SlyX  31 qqidrlqrqlrllaerlkeleessg 55 
                                       ++++  q++ r +a+ +++ +e+++
  gi|300713052|ref|YP_003738864.1| 129 RELTTNQQRARFIAQDVQNYAEKAP 153
                                       6777788888888888888777765 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.6    0.0015      0.53      11      93 ..      22     108 ..      16     139 .. 0.76
   2 ?   -1.5   0.0       6.6   2.3e+03      40      62 ..     163     185 ..     130     193 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0015
                    CENP-F_leu_zip  11 kLKeserkadsLkdkvenLerelemseenqekvileaEtska....evetlkeeieelaeelreleldLvalrseke 83 
                                        LK + ++ + L d+ve+Le+e+e  +   ++++ +  + k     e   ++  i   + ++ ele+ L+++  e  
  gi|300713052|ref|YP_003738864.1|  22 TLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRfagsEFADVRGRITDVEDQTDELETTLQETPTETT 98 
                                       57888888899999999999999999999888888877766522225556888888888888888888888888877 PP

                    CENP-F_leu_zip  84 eLekelqkkq 93 
                                       +++ e   +q
  gi|300713052|ref|YP_003738864.1|  99 TVAAEETGSQ 108
                                       7766655555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 6.6
                    CENP-F_leu_zip  40 qekvileaEtskaevetlkeeie 62 
                                         kvi+ aE sk   +t+   ++
  gi|300713052|ref|YP_003738864.1| 163 IAKVITAAEGSKPHTQTVARVMN 185
                                       45788888988888888776665 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.6    0.0023      0.79      44     112 ..      24      92 ..      19     104 .. 0.67
   2 ?    0.8   0.1       1.3   4.6e+02      64     114 ..     141     191 ..     109     201 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0023
                           DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveg 112
                                       +sv +qle++ + +++   +++ + dr+d+   + +e ++   +e ++vr+ +++++++ ++++++ ++
  gi|300713052|ref|YP_003738864.1|  24 KSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQE 92 
                                       567777777777777777777655555555555555555666677777777777777777777776654 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.3
                           DUF1664  64 Lssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegle 114
                                       +++++++  +k  +   + +++ ++v ++ e+ +   + v  v +  e+l+
  gi|300713052|ref|YP_003738864.1| 141 IAQDVQNYAEKAPAGLVLDSQTIAKVITAAEGSKPHTQTVARVMNFLEKLG 191
                                       456666666777777777777777777777777777777777777666665 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   5.3      0.25        86      36      60 ..      29      53 ..      26      60 .. 0.74
   2 ?   11.0   2.4    0.0012       0.4      19      60 ..      51      92 ..      48     100 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.25
                              HalX 36 eYqeLearleelraqldetldeldd 60
                                      + + L++r+eel+a+++   d++d+
  gi|300713052|ref|YP_003738864.1| 29 QLETLTDRVEELEAEIECKDDRIDE 53
                                      5678899999999999877777555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0012
                              HalX 19 ravLeaekseaeLadseeYqeLearleelraqldetldeldd 60
                                       + Lea+++e  + +  e+++ ++r+ ++++q de+ + l++
  gi|300713052|ref|YP_003738864.1| 51 IDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQE 92
                                      578********************************9887666 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2     0.029        10      14      51 ..      24      58 ..      10      63 .. 0.53
   2 ?    4.7   0.6      0.12        41      17      59 ..      48      91 ..      42     121 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.029
                           NPV_P10 14 kavddkVdalqqqvddvqenlpdvtelnekLdaqsaqL 51
                                      k v ++++ l ++v++++++++      +++d++ aqL
  gi|300713052|ref|YP_003738864.1| 24 KSVWEQLETLTDRVEELEAEIEC---KDDRIDELEAQL 58
                                      33444444555555555544433...234455555554 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.12
                           NPV_P10 17 ddkVdalqqqv...........ddvqenlpdvtelnekLdaqsaqLaeletkve 59
                                      dd++d l++q+           +dv+           ++ +  +q +elet+++
  gi|300713052|ref|YP_003738864.1| 48 DDRIDELEAQLteykrfagsefADVR----------GRITDVEDQTDELETTLQ 91
                                      66777777777333333332222222..........222222222222222222 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.027       9.3      31      83 ..      23      77 ..      19      81 .. 0.61
   2 ?    4.1   0.0      0.22        78      23      56 ..      68     101 ..      66     150 .. 0.80
   3 ?    1.3   0.1       1.7   5.8e+02      30      61 ..     179     211 ..     160     224 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.027
                      Occludin_ELL 31 leevskkfseLerelkelkegsk....eykkieeeilqeykklkkdpeyqekkkrce 83
                                      l++v+++++ L ++++el+ + +    +++++e++ l eyk++   +e+ + + r++
  gi|300713052|ref|YP_003738864.1| 23 LKSVWEQLETLTDRVEELEAEIEckddRIDELEAQ-LTEYKRF-AGSEFADVRGRIT 77
                                      56677777777777777776666333355555556.5666665.4667777666665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.22
                      Occludin_ELL  23 eYkelhaeleevskkfseLerelkelkegskeyk 56 
                                       e+ ++  ++++v+++  eLe+ l+e ++++++++
  gi|300713052|ref|YP_003738864.1|  68 EFADVRGRITDVEDQTDELETTLQETPTETTTVA 101
                                       677888999999********99999999887443 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 1.7
                      Occludin_ELL  30 eleevskkfseLe.relkelkegskeykkieee 61 
                                        ++ v++ +++L  +++++ k++ k+   ie+e
  gi|300713052|ref|YP_003738864.1| 179 TVARVMNFLEKLGkDDVEQTKRRGKKLVVIEKE 211
                                       333344444444323344444444455555555 PP

>> HMMR_N  Hyaluronan mediated motility receptor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.6   0.00025     0.088     235     306 ..      22      93 ..       2     119 .. 0.79
   2 ?   -1.4   0.1       3.6   1.2e+03      82     107 ..     186     211 ..     126     223 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00025
                            HMMR_N 235 elsnvseqlekykldiaqleellkekndeiesLkssLeekeqelskqvkdlnekckllekekeelvreeeek 306
                                        l++v eqle    ++++le  ++ k+d i +L  +L e +     +  d   ++  +e +++el +  +e 
  gi|300713052|ref|YP_003738864.1|  22 TLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQET 93 
                                       58999*************************************99***************8887764443322 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
                            HMMR_N  82 eLEkeiRsLvqergeqdkrlqaleee 107
                                        LEk  ++ v++   + k+l  +e+e
  gi|300713052|ref|YP_003738864.1| 186 FLEKLGKDDVEQTKRRGKKLVVIEKE 211
                                       34444444444444444444444433 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.4    0.0055       1.9     100     139 ..      23      62 ..      14      65 .. 0.72
   2 ?    3.6   0.1      0.12        43     110     142 ..      72     104 ..      65     112 .. 0.82
   3 ?    0.7   0.2      0.94   3.2e+02      57     103 ..     135     183 ..     123     207 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0055
                         PspA_IM30 100 aealetqlaqqrsaveqlrkqlealetkieelkakkellk 139
                                       ++   +ql+ + + ve+l++++e  + +i+el+a+ +++k
  gi|300713052|ref|YP_003738864.1|  23 LKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYK 62 
                                       5555567777777788888888888888888888877765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.12
                         PspA_IM30 110 qrsaveqlrkqlealetkieelkakkellkare 142
                                       +r  + +++ q ++let ++e+ ++ ++++a e
  gi|300713052|ref|YP_003738864.1|  72 VRGRITDVEDQTDELETTLQETPTETTTVAAEE 104
                                       566678899999999999999999999999977 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.94
                         PspA_IM30  57 erkleeqkeqakklekkAkaALtkgeeeLAr..ealaeikslekqaeal 103
                                       +++++  +++++++ +kA a L   ++  A+   a++  k +++++++ 
  gi|300713052|ref|YP_003738864.1| 135 QQRARFIAQDVQNYAEKAPAGLVLDSQTIAKviTAAEGSKPHTQTVARV 183
                                       4566667788888888888888888877777334566666666666655 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7    0.0026      0.88      33     103 ..      13      87 ..       4      88 .. 0.56
   2 ?    4.0   1.1       0.2        69      24      77 ..      57     108 ..      54     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0026
                                       HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........HHHHHHHHHHHHHHHHHHHC CS
                             DUF16  33 kqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln....kvdetleliletLqkinkRlDsie 103
                                       +q  +  e ++++  eq++ l++ ve+++++i+    +++  +++l       ++ +  +   ++++++  D++e
  gi|300713052|ref|YP_003738864.1|  13 DQPTTTDEPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTeykrFAGSEFADVRGRITDVEDQTDELE 87 
                                       555555566666666666666666666666666555555555555543333344555556666666666666665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.2
                                       HHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
                             DUF16  24 qlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgee 77 
                                       ql e+k     ++ ++  +++  + q ++le + ++   +    +v  +  g +
  gi|300713052|ref|YP_003738864.1|  57 QLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQETPTET--TTVAAEETGSQ 108
                                       88999999999999999999999999999988776554433..33333333333 PP

>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.6     0.019       6.4     108     140 ..      26      58 ..       8      63 .. 0.81
   2 ?    4.3   0.4       0.1        35      79     143 ..      78     143 ..      75     148 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.019
                          MIP-T3_C 108 teealeplkaqlaeleeaIkdqkekisnvraki 140
                                         e+le l ++++ele++I+ + ++i+++ a++
  gi|300713052|ref|YP_003738864.1|  26 VWEQLETLTDRVEELEAEIECKDDRIDELEAQL 58 
                                       557899999999*******99999999998876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.1
                          MIP-T3_C  79 DidsMqrELemWrseyrqqae..elaeerrateealeplkaqlaeleeaIkdqkekisnvrakilkN 143
                                       D++  + ELe   +e   + +  +++e  ++t  +  pl+ ++  l e++ d++  +++ ra+ ++ 
  gi|300713052|ref|YP_003738864.1|  78 DVEDQTDELETTLQETPTETTtvAAEETGSQTTTTETPLE-RICTLPEHVTDRELTTNQQRARFIAQ 143
                                       7777778887766655444330144555567777777775.6899****************998875 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.0    0.0016      0.54      33     121 ..      25     111 ..      21     152 .. 0.73
   2 ?   -1.4   0.0       7.3   2.5e+03      68      74 ..     193     199 ..     165     222 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0016
                     Jnk-SapK_ap_N  33 kvLElLeslasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrele 109
                                       +v E+Le l+ r ee eae+e   + +++Le ++++ k +   +  ++    + +e+++ el++ ++++ +e+  + 
  gi|300713052|ref|YP_003738864.1|  25 SVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQETPTETTTVA 101
                                       57799999999999999999999999999999999999888877766666666667777777777777777776666 PP

                     Jnk-SapK_ap_N 110 lkaknaadqlsr 121
                                         a+++  q+++
  gi|300713052|ref|YP_003738864.1| 102 --AEETGSQTTT 111
                                       ..3333333333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 7.3
                     Jnk-SapK_ap_N  68 rekelrk 74 
                                       +  e+ k
  gi|300713052|ref|YP_003738864.1| 193 DDVEQTK 199
                                       2223333 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   9.5   0.00032      0.11      18     119 ..      11     111 ..       2     118 .. 0.76
   2 ?    8.2   1.0    0.0077       2.7      36      89 ..      68     126 ..      59     151 .. 0.70
   3 ?   -1.4   0.2       6.7   2.3e+03      99     125 ..     186     213 ..     177     226 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00032
                     Tropomyosin_1  18 eleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesek.kktnnealtrkiqlLEeeleesd 93 
                                       +  +   + e + ++  ++++ Lt ++++le+e+e  ++++ e ++++ e ++ + ++   +  +i  +E++ +e +
  gi|300713052|ref|YP_003738864.1|  11 ATDQPTTTDEPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYKRfAGSEFADVRGRITDVEDQTDELE 87 
                                       5555555556666666688999999999999999999999999998887766514566669999************* PP

                     Tropomyosin_1  94 kkLkettekLretdvkaeelERkvka 119
                                       ++L+et +  + t v+aee+  +++ 
  gi|300713052|ref|YP_003738864.1|  88 TTLQETPT--ETTTVAAEETGSQTTT 111
                                       ******87..5677888887776665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0077
                     Tropomyosin_1  36 eiksLtkknqqleeevekleeklkea.....kekaeesekkktnnealtrkiqlLEeel 89 
                                       e ++   ++  +e++ ++le++l+e+     + +aee+ ++ t+ e+   +i  L e +
  gi|300713052|ref|YP_003738864.1|  68 EFADVRGRITDVEDQTDELETTLQETptettTVAAEETGSQTTTTETPLERICTLPEHV 126
                                       66677788999999999999999986222113456777777777777666777776654 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 6.7
                     Tropomyosin_1  99 ttekLretdvk.aeelERkvkaLeqerd 125
                                        +ekL + dv+ +    +k  ++e+e++
  gi|300713052|ref|YP_003738864.1| 186 FLEKLGKDDVEqTKRRGKKLVVIEKEAA 213
                                       5677777776413445666666666654 PP

>> DUF848  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.8   0.00066      0.23      88     127 ..      28      71 ..       4      80 .. 0.71
   2 ?    4.0   3.4      0.14        50      54     129 ..      36     112 ..      35     125 .. 0.75
   3 ?    0.8   0.1       1.4     5e+02      51      96 ..     176     222 ..     162     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00066
                            DUF848  88 arveeLtdkvlelkeevsle...ldsleeaqeeyqeg.essets 127
                                       +++e Ltd+v+el++e++ +   +d+le++  ey+   +s+ ++
  gi|300713052|ref|YP_003738864.1|  28 EQLETLTDRVEELEAEIECKddrIDELEAQLTEYKRFaGSEFAD 71 
                                       789**************986222666666666666443444444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.14
                            DUF848  54 rtkeikalveavdteieakkkelslLkklnrkkvarveeLtdkvlelkeevsleldsleeaqeeyqeg.essetsip 129
                                       r +e++a +e  d +i++ + +l   k++   + a+v      v++  +e++  l++   +      + ++s+t   
  gi|300713052|ref|YP_003738864.1|  36 RVEELEAEIECKDDRIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQETPTETTTVAAEeTGSQTTTT 112
                                       66788999999999999999999999999999999999888889999999999887765544444433366666554 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 1.4
                            DUF848  51 qlkrtkeikalveavdt.eieakkkelslLkklnrkkvarveeLtdk 96 
                                       +++  +++ + +e++++  +e++k+  ++L  +++++ +r  + +d+
  gi|300713052|ref|YP_003738864.1| 176 HTQTVARVMNFLEKLGKdDVEQTKRRGKKLVVIEKEAADRYHDRCDR 222
                                       66677788888888765269999999999999999999888888876 PP

>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3      0.23        79     115     148 ..      13      46 ..       2      50 .. 0.73
   2 ?    8.4   1.1    0.0037       1.3     113     212 ..      50     151 ..      45     163 .. 0.86
   3 ?   -1.2   0.0       3.3   1.1e+03     170     203 ..     168     199 ..     157     220 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.23
                              Not3 115 dpkekekeearewlkdaideLneqvekleaeiek 148
                                       d+ + + e + + + +++++L+++ve+leaeie 
  gi|300713052|ref|YP_003738864.1|  13 DQPTTTDEPTLKSVWEQLETLTDRVEELEAEIEC 46 
                                       555555666677778899999999*****99985 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0037
                              Not3 113 kldpkekekeearewlkdaideLneqvekleaeieklsskkkkkkkskekarveeleklierhkfhieklelllrll 189
                                       ++d+ e + +e +++  +   +++ ++ ++e + ++l+++ ++  +++++   ee+ ++++++++ +e++ +l + +
  gi|300713052|ref|YP_003738864.1|  50 RIDELEAQLTEYKRFAGSEFADVRGRITDVEDQTDELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPEHV 126
                                       578999999999*************************99988888777667999999999999************** PP

                              Not3 190 eneelep..eevekikedieyyves 212
                                        + el++  ++ + i +d++ y e+
  gi|300713052|ref|YP_003738864.1| 127 TDRELTTnqQRARFIAQDVQNYAEK 151
                                       9999998434455699999999987 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.3
                              Not3 170 klierhkfhieklelllrlleneelepeevekik 203
                                       +  e  k h++ +  ++++le+  l +++ve++k
  gi|300713052|ref|YP_003738864.1| 168 TAAEGSKPHTQTVARVMNFLEK--LGKDDVEQTK 199
                                       4455555666666666666543..4444444444 PP

>> Cep57_CLD  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.4   0.00081      0.28      99     152 ..       7      60 ..       2      64 .. 0.86
   2 ?    1.0   0.2       1.1   3.8e+02      72     107 ..      75     110 ..      63     139 .. 0.61
   3 ?   -0.4   0.2       2.8   9.8e+02      98     128 ..     181     211 ..     116     218 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00081
                         Cep57_CLD  99 ekqaslekekkqesselqaklekLekLEkeylrLtatqklaekkikeLeekLke 152
                                        k++++++  ++++  l++  e+Le+L  +  +L+a+ +  +++i eLe +L+e
  gi|300713052|ref|YP_003738864.1|   7 TKSTATDQPTTTDEPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTE 60 
                                       455666666789999*************************************98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 1.1
                         Cep57_CLD  72 rcslLEkqLeymrkmvesaekerkavlekqasleke 107
                                       r++  E q +++   ++++ +e ++v  +++  ++ 
  gi|300713052|ref|YP_003738864.1|  75 RITDVEDQTDELETTLQETPTETTTVAAEETGSQTT 110
                                       444455555555555555555555554444433333 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.8
                         Cep57_CLD  98 lekqaslekekkqesselqaklekLekLEke 128
                                        +    lek  k + ++++++ +kL  +Eke
  gi|300713052|ref|YP_003738864.1| 181 ARVMNFLEKLGKDDVEQTKRRGKKLVVIEKE 211
                                       2233344455566666666677777777776 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.7     0.013       4.4     130     208 ..      20     122 ..       2     190 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
                           DUF4407 130 a.....ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelae 201
                                       +       ++l++l++++++l+aei+ +++r+d+l+a+++ e++   g++   v+G+ +  +  +++l++  +e  +
  gi|300713052|ref|YP_003738864.1|  20 EptlksVWEQLETLTDRVEELEAEIECKDDRIDELEAQLT-EYKRFAGSEFADVRGRITDVEDQTDELETTLQETPT 95 
                                       1445555567777777777777788888888877777777.666555666666666665555555555444444444 PP

                           DUF4407 202 lkakld....................a 208
                                        ++++                      
  gi|300713052|ref|YP_003738864.1|  96 ETTTVAaeetgsqttttetplerictL 122
                                       444444455455455555555544442 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.2    0.0092       3.2      12      51 ..      20      59 ..      16      93 .. 0.66
   2 ?    2.3   0.1      0.65   2.2e+02      16      70 ..      70     124 ..      59     141 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0092
                   Snapin_Pallidin 12 epkldeldeklkelrqsQeeLleqldrlnekLkeleeaqe 51
                                      ep+l+ + e+l+ l++  eeL ++++   ++++ele    
  gi|300713052|ref|YP_003738864.1| 20 EPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLT 59
                                      7889999999999999999999888888888887766443 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.65
                   Snapin_Pallidin  16 deldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikk 70 
                                        +++ ++ +++++ +eL  +l++  ++ + ++ ++  ++ +++++ ++++ ++  
  gi|300713052|ref|YP_003738864.1|  70 ADVRGRITDVEDQTDELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPE 124
                                       5677788888888888888888888887777666664445555555555555555 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.1    0.0027      0.94      58      95 ..      10      58 ..       1      61 [. 0.70
   2 ?    1.8   0.7      0.97   3.3e+02      66      90 ..      75      99 ..      59     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0027
                           DUF4140 58 pnreaeee...........elkalraeleeledelaaledelaaaearl 95
                                      + ++++++           +l++l++++eele+e++  +d+++ +ea+l
  gi|300713052|ref|YP_003738864.1| 10 TATDQPTTtdeptlksvweQLETLTDRVEELEAEIECKDDRIDELEAQL 58
                                      3333333344456677774599999999999999999999999999997 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.97
                           DUF4140 66 elkalraeleeledelaaledelaa 90
                                      ++  ++++ +ele++l++   e ++
  gi|300713052|ref|YP_003738864.1| 75 RITDVEDQTDELETTLQETPTETTT 99
                                      3445555555555555555444444 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.0    0.0099       3.4      69     126 ..       5      62 ..       2      65 .. 0.73
   2 ?    2.9   4.7       0.2        69      32      92 ..      76     136 ..      70     152 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0099
                        MscS_porin  69 easkeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltear 126
                                       +++k + + +++++ e  l+++ +ql++l+ +  +l++++    +r++++ +qlte +
  gi|300713052|ref|YP_003738864.1|   5 TTTKSTATDQPTTTDEPTLKSVWEQLETLTDRVEELEAEIECKDDRIDELEAQLTEYK 62 
                                       5566666666666667778888888888888888888888888888888888888866 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.2
                        MscS_porin  32 idkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtss 92 
                                       i + +++++el++++++ P e+ ++ +e    q +++e++ e++ +l+     ++l++ ++
  gi|300713052|ref|YP_003738864.1|  76 ITDVEDQTDELETTLQETPTETTTVAAEETGSQTTTTETPLERICTLPEHVTDRELTTNQQ 136
                                       5566777777777777777777777777777777777777777766666555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1485  (0.0828267); expected 358.6 (0.02)
Passed bias filter:                      819  (0.0456802); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        57  (0.00317921); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              52  [number of targets reported over threshold]
# CPU time: 0.82u 0.33s 00:00:01.14 Elapsed: 00:00:00.50
# Mc/sec: 1397.15
//
Query:       gi|300713053|ref|YP_003738865.1|  [L=792]
Description: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.1e-173  577.7   0.5   2.5e-173  577.5   0.5    1.1  1  Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehyd
    1.5e-25   89.7   0.4    8.5e-25   87.3   0.4    2.2  1  Ald_Xan_dh_C   Aldehyde oxidase and xanthine dehydrogenase, a


Domain annotation for each model (and alignments):
>> Ald_Xan_dh_C2  Molybdopterin-binding domain of aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  577.5   0.5  2.8e-177  2.5e-173       1     550 []     172     725 ..     172     725 .. 0.97

  Alignments for each domain:
  == domain 1  score: 577.5 bits;  conditional E-value: 2.8e-177
                                       STTT-STTEEEEEEEE-H...HHHHHH-S.EEEEEEEEEEBE---SS--EEEEEEETCTTEEEEEES-SSHHHHHHH CS
                     Ald_Xan_dh_C2   1 vheeapdnvlakiekGdv...eaafaeadhvvegefrtgrqehfylEtqaalavpddedgeltvysstqaphevrrl 74 
                                       +he+ ++n+++++e Gd    ea +a+ad vv+ +f+++r+ ++++E+++a+a+++ +d+el v  stq+ph+vr+ 
  gi|300713053|ref|YP_003738865.1| 172 IHETNGENLAFEWETGDEdaaEATLATADNVVTVDFEINRVIPTAMEPRTAVAQYHSSDDELAVELSTQNPHQVRAD 248
                                       68888999999*****953348889**************************************************** PP

                                       HHHHHT--GGGEEEE-SB-S--TTTTSS--HHHHHHHHHHHHHTS-EEEE--HHHHHHHS-EEEEEEEEEEEEE-TT CS
                     Ald_Xan_dh_C2  75 vaevlglpenkvrvivprvGGGFGgKtqsvplevlaalaAkktgrpVklvldReedmlatgkrhpfkikykvgadkd 151
                                       ++++lg pe+++rv+ p+vGGGFG K+++++  +la ++A++++rpVk+v  R+ed+++  + + +++++++++d+d
  gi|300713053|ref|YP_003738865.1| 249 LSATLGTPEKQIRVRPPDVGGGFGAKLFPYTGHLLAGWCARRLERPVKWVAPRTEDFQSMIHSRHHIVHAQAAVDDD 325
                                       ***************************************************************************** PP

                                       S-EEEEEEEEEEEESST.HHHCHCCHCCTTGGGTTTB--SEEEEEEEEEE-SSS-EE-SSTTTHHHHHHHHHHHHHH CS
                     Ald_Xan_dh_C2 152 GkitaldvdlladaGay.adlspavleralshldgpYkipnvrvegrvvytNtppntafRGfGgpqamfalErlmde 227
                                       G+i ++++d++  +G +  + +++v+++  ++++g+Y+ip++ v++r+++tNt+p +a+RG+G+p+a++++Erl++ 
  gi|300713053|ref|YP_003738865.1| 326 GTIRGFQADTTVPVGGFlVPNGSGVPTNLGVMANGQYDIPAAYVQTRGAFTNTAPLSAYRGAGRPEATYFIERLVET 402
                                       ************9999967********************************************************** PP

                                       HHHHHT--HHHHHHHHBCECGCC.SEEET...EESSS-HHHHHHHHHHHHTHHHHHHSCCHHCCTECEEEEEEEEEE CS
                     Ald_Xan_dh_C2 228 lAeelgldplelRrrNlikpgeltpygqp...vydsgdlpelldklkessdyeerraeqaefnagwkkrGiglapvv 301
                                       +A+++++dp++lRr+N+i p+++ p+++    +ydsg+++e+l +++ ++dye +r++q++ +++++ rGigl+++v
  gi|300713053|ref|YP_003738865.1| 403 VARKIDVDPADLRRKNFIPPEAF-PFETGlgrTYDSGEYDETLTTALGTVDYETFRERQQRDREEGRYRGIGLSCYV 478
                                       ***********************.**9977889******************************88899********* PP

                                       EEBS--S.EETTEEEEEEEEE-TTS-EEEEESS--SSS-HHHHHHHHHHHHHT--GGGEEEE-SBTTSSS----S-T CS
                     Ald_Xan_dh_C2 302 egiglgftakflnqegalvrvntdGsvtvstggtemGqGletklaqiaaeeLgvpledvrvvegdtdkvpngsgtaa 378
                                       e++g++++     +e+  v+v+++G+v+v+tg++e+G+G+ t ++qi+a+eLgv ++dv+++egdt+ +++g gta+
  gi|300713053|ref|YP_003738865.1| 479 EACGAAPGL----HESGAVHVEPSGRVVVKTGTAEIGTGHRTGYTQIVADELGVLFNDVEIIEGDTAEIAEGNGTAG 551
                                       ***988854....67999*********************************************************** PP

                                       T-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-CCCEEEETTEEEET...EEEECHHHHHHHHHH........TTSS CS
                     Ald_Xan_dh_C2 379 SrstdlngnAvkkAaeklrerllkiaaellevspedleledgkvvvk...eksvslaelaaaayl........ervs 444
                                       Sr++ ++g+A k+ ae++ e+ ++i a++le+s++d+e++dg+++++   +++++++e+a+ a+         ++++
  gi|300713053|ref|YP_003738865.1| 552 SRAMPVGGSALKQSAEEIVEKGREIVANQLEASKADIEFADGEFFISgipTRTLTIQEVAEIAHDesgtlpdgMDPG 628
                                       *************************************************99999*******999999999999999* PP

                                       EEEEEEE...EEEETHCHCSBBEEEEEEEEEEEEETTT--EEEEEEEEEEE-BS-S-HHHHHHHHHHHHHHHHHHHH CS
                     Ald_Xan_dh_C2 445 lsatgfyktldeetgkgppfayfaygaavaeVevDtetgevkvlrvvivhDvGksiNpaivegQieGGfvqGiGlal 521
                                       l+at+ +         +pp+++f++g++va+VevD++ ge++++r+v+v+DvG+ iNp+i+egQi+GG++qGiG+al
  gi|300713053|ref|YP_003738865.1| 629 LAATTDF---------DPPNYTFPFGTHVAVVEVDPDSGEIDLERYVAVDDVGTQINPKIIEGQIHGGVAQGIGQAL 696
                                       *******.........9************************************************************ PP

                                       T---EEETTTEESS-STTTS----GGGS- CS
                     Ald_Xan_dh_C2 522 mEelvydedGqlltasladYkiPtaadiP 550
                                       +Ee +yd++G+llt s++dY iP+a+ +P
  gi|300713053|ref|YP_003738865.1| 697 YEEAIYDDNGNLLTGSMQDYAIPKAEHLP 725
                                       *************************9887 PP

>> Ald_Xan_dh_C  Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.4   9.5e-29   8.5e-25       1     109 [.      31     155 ..      31     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 9.5e-29
                                       TT-SCCGGGCC-TTTEEEEEEE-SSSSEEEEEEE-HHHHCSTTEEEEEEHHHHCCGTECCT......TSSS-EE... CS
                      Ald_Xan_dh_C   1 tGeavYvdDipapgalylafvrStkahAkivsidvsaalalpGVvavitakdlpkenkaig......siledee... 68 
                                       tGe  Y+dDi++ g+++l ++ S + hA+i si +++a  ++GV+ v+t+kd++k+   +       +     e   
  gi|300713053|ref|YP_003738865.1|  31 TGESEYTDDIQYDGEVHLGLLGSRYGHARIESITTTDAAMMDGVLGVYTWKDIQKSDAPGYmrvdnpT-----Egsa 102
                                       8*****************************************************99887766555541.....2334 PP

                                       ............EESS-SSEESSTT-EEEEEEESSHHHHHHHHHT-EEEEEE- CS
                      Ald_Xan_dh_C  69 ............dallaedkvrsvgqavaavvAedeetArkAaklvkveYeel 109
                                                   + lla++kv+++gq+vaavvAed++t r+A++ + v+Ye+l
  gi|300713053|ref|YP_003738865.1| 103 esdtdtgavapeHPLLADTKVTYQGQPVAAVVAEDRYTVRDALESIAVDYERL 155
                                       44556788888788*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5384.22
//
Query:       gi|300713054|ref|YP_003738866.1|  [L=77]
Description: hypothetical protein HacjB3_18678 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 558.42
//
Query:       gi|300713055|ref|YP_003738867.1|  [L=280]
Description: Amidase, partial [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-19   70.0   0.0    2.3e-19   69.7   0.0    1.1  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   1.3e-23   2.3e-19     193     450 ..       1     257 [.       1     258 [. 0.79

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.3e-23
                                       EESSHHHHHHHHHHHBS--TT-TTS----...HHHHHHHHCTT---TT-EEEEEGGGC........SS---CCHHHH CS
                           Amidase 193 larsvedlalllrvilgedpkdstssvip...eesedlaeelkkslkglriGvvkedg........vasldpevqra 258
                                       ++r+v d+a++l+v++g+dp+d+ ++        ++ ++  +   l+g riGv+++++         ++ +++v  +
  gi|300713055|ref|YP_003738867.1|   1 MTRTVADAAAMLEVLAGYDPEDPVTARGAtaiPDEGYTDCLNDDGLQGARIGVIRDYFdlqdgeleLEEENEAVVSV 77 
                                       8*********************98887656665677888999999***********999666633333334444455 PP

                                       HHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHHHHHHTTT-SSSSS.---SS-SCCCCCCCHHHHCCS-HHHH CS
                           Amidase 259 vekalkaLeeaGhevvevelpsleealslyylilvaeassnlarylgvry.erlsetkvlsellpksraellgeevk 334
                                       +eka+   e++G+++v+ ++  +++ +    ++  +e++  l+      y e l ++  ++ + +   + ++ +ev 
  gi|300713055|ref|YP_003738867.1|  78 LEKAIGDIEAEGATIVD-SVDVIDQEFLSGARVTDLEFKRDLN-----AYlESLGNDAPVDSMEEILESGQIHPEVA 148
                                       67777788888888887.6666666666666777777765544.....444778899999999999999******** PP

                                       HHHHHHHHH.CSCCCCCCC..HHHHHHHHHHHHHHHHHHCCC..BSEEEEESSSSS--BCCCCCHHHCSHHHHHGCC CS
                           Amidase 335 rrielgnya.lsaeassky..ylkaqkvrrllrrefakafee..lDvllsPtaptpaprlgekdktidsytvlynll 406
                                       +rie+ +    + e+ +++  yl+   +r+++r+ + + + e  lD+ll P ++ p+++++e ++     +++++ l
  gi|300713055|ref|YP_003738867.1| 149 ARIEEAGIPdVDVESLGENpdYLERLVRRTEIRDIVLQTMVEqdLDALLYPPSTVPPVSIEENQP----FSEMNCEL 221
                                       ***999875233333344448999999999**********999******************9974....33444333 PP

                                       TTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHH CS
                           Amidase 407 dftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetl 450
                                                 + glpa+ vpag++ dglPvGv++ g++f+e +l
  gi|300713055|ref|YP_003738867.1| 222 S--------AHSGLPAIVVPAGFTGDGLPVGVELLGREFAEPRL 257
                                       3........469*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2036.13
//
Query:       gi|300713056|ref|YP_003738868.1|  [L=125]
Description: beta-lactamase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.08   12.2   0.2      0.084   12.1   0.2    1.0  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   4.7e-06     0.084     222     307 ..      17     103 ..       2     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.7e-06
                                       EEEHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCH.....TEEEEEEESTEEE CS
                    Beta-lactamase 222 istardlarflglalegglllsaetlaqltaklssgttrpagiraglglGwvladktga.....pgtfghtGggygt 293
                                       ++t+rd arf+ l+l++g+  ++++l +   +      +p+   +g+g  w+l+  + +     + +++ +G    +
  gi|300713056|ref|YP_003738868.1|  17 WATTRDFARFGLLHLQDGQFAGEQVLPP---WWTDEVIQPSAAEDGYGGLWWLNTNQESqedvpADAYWASG-VSDQ 89 
                                       79*********66666666666665554...55555555666666777779999888889************.9999 PP

                                       EEEEECGGTEEEEE CS
                    Beta-lactamase 294 yvfvdpeanlvvav 307
                                        + v+p ++lv+a 
  gi|300713056|ref|YP_003738868.1|  90 RIHVIPSEDLVIAR 103
                                       99*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.44
# Mc/sec: 853.26
//
Query:       gi|300713057|ref|YP_003738869.1|  [L=45]
Description: hypothetical protein HacjB3_18693 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 353.42
//
Query:       gi|300713058|ref|YP_003738870.1|  [L=55]
Description: hypothetical protein HacjB3_18698 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0016   18.6   0.9     0.0016   18.6   0.9    1.1  1  DUF1931        Domain of unknown function (DUF1931)
      0.003   17.0   0.1      0.003   17.0   0.1    1.0  1  DctP           Bacterial extracellular solute-binding protein
     0.0042   17.4   0.1     0.0053   17.0   0.1    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
  ------ inclusion threshold ------
       0.12   12.6   0.1       0.15   12.3   0.1    1.1  1  Glutaredoxin   Glutaredoxin


Domain annotation for each model (and alignments):
>> DUF1931  Domain of unknown function (DUF1931)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9   3.6e-07    0.0016      17      53 ..      19      55 .]       3      55 .] 0.88

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.6e-07
                                      HHHHHHHHHHHHHHHCCCCHHHHHHHTT-SEE-GGGS CS
                           DUF1931 17 dlkrisdfVekklydLllvaeenAkangrdviepaDL 53
                                        +++ d ++k++++Ll+ a ++A+ n r++++ +DL
  gi|300713058|ref|YP_003738870.1| 19 VSADFYDALDKEVEELLEDAAQRAADNDRKTVQARDL 55
                                      4567899*****************************8 PP

>> DctP  Bacterial extracellular solute-binding protein, family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   6.6e-07     0.003     211     245 ..      19      53 ..       4      55 .] 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.6e-07
                                       EEHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH CS
                              DctP 211 vnkktwdsLpedlqaileeaakeatelqrklveel 245
                                       v+++++d L +++ + le+aa++a++  rk v+++
  gi|300713058|ref|YP_003738870.1|  19 VSADFYDALDKEVEELLEDAAQRAADNDRKTVQAR 53 
                                       89*************************99999876 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.2e-06    0.0053      30      61 ..      24      55 .]       4      55 .] 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
                                      HHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHH CS
                     CBFD_NFYB_HMF 30 aecveefieelaseAaeickkekrKtikaehi 61
                                      ++++   +eel++ Aa+++ +++rKt++a ++
  gi|300713058|ref|YP_003738870.1| 24 YDALDKEVEELLEDAAQRAADNDRKTVQARDL 55
                                      566777789999*****************997 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.2e-05      0.15      14      46 ..       9      46 ..       8      50 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
                                      HHHHHHHHTTGGEEEEEGCCSH..HHHHHHHHHH...T CS
                      Glutaredoxin 14 kakrlLkelgvkfeeidvdkde..eireelkels...g 46
                                      ++k++L++++v+ +++d ++ e  e+ e+  +++   +
  gi|300713058|ref|YP_003738870.1|  9 AVKNTLTDHNVSADFYDALDKEveELLEDAAQRAadnD 46
                                      89******************866555555555545555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 430.31
//
Query:       gi|300713059|ref|YP_003738871.1|  [L=76]
Description: hypothetical protein HacjB3_18703 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 605.92
//
Query:       gi|300713060|ref|YP_003738872.1|  [L=146]
Description: UspA domain protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-25   88.4   0.4    7.6e-25   88.1   0.4    1.1  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.4   4.3e-29   7.6e-25       1     140 [.       1     145 [.       1     146 [] 0.88

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 4.3e-29
                                       S-SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH....... CS
                               Usp   1 mykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada....... 70 
                                       m  +Il+++D+s+ +++Al++A +   ++  ++++lhv d+ a ++  +  + +  +  e   ++ + d        
  gi|300713060|ref|YP_003738872.1|   1 MATHILIPLDDSTPAQHALQFACDIHPTS--QITVLHVDDTTAADPGEAVTDRSLSDGGEIPHQRDRVDTtdallrn 75 
                                       7789********************76554..6********998877766666655555555555555555579**** PP

                                       HHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEE CS
                               Usp  71 akaaaeaggvkvevvveegdpaeeilevaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvV 140
                                       a+  a+++gv+  ++ ++gdpa +i   aee+ +d i++G +g+s  ++l +G v++ v++++++pV+vV
  gi|300713060|ref|YP_003738872.1|  76 AEVTAAEQGVDISTESLGGDPAATIMACAEEQAIDHIIIGIHGKSDPKQLAIGTVAKTVAHNSSIPVTVV 145
                                       *********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1222.85
//
Query:       gi|300713061|ref|YP_003738873.1|  [L=212]
Description: hypothetical protein HacjB3_18713 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-13   49.2   0.0    2.9e-05   25.0   0.0    2.2  2  CHRD      CHRD domain


Domain annotation for each model (and alignments):
>> CHRD  CHRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.1e-08   0.00019      90     116 .]      41      69 ..       5      69 .. 0.60
   2 !   25.0   0.0   1.6e-09   2.9e-05      15      80 ..      98     168 ..      80     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.1e-08
                              CHRD  90 laalka..gelyvnvhteefpgGeiRGql 116
                                       ++++ +   +++v+vhteef +G+iRGq+
  gi|300713061|ref|YP_003738873.1|  41 VQDIVDnpDGFFVDVHTEEFVPGAIRGQI 69 
                                       222222467*******************8 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 1.6e-09
                              CHRD  15 vttgasGtavltldddgktlsysvtvsgls......dvtaaHihegaagengpvvvtleetekekesaetvp 80 
                                       ++ ++sG   l+l+++++ +++++ v  ++      + ta Hihe++ ge+gp  v + ++  ++ + ++v+
  gi|300713061|ref|YP_003738873.1|  98 GDPEGSGLYELELQPEENIICFDIAVD-VTppyqspANTATHIHEAPEGEAGPPRVVFPDPTPNDPEVQQVR 168
                                       3444899999999*************7.6668888888899*****************99888777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1780.21
//
Query:       gi|300713062|ref|YP_003738874.1|  [L=241]
Description: hypothetical protein HacjB3_18718 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-33  115.9   0.1      1e-28  100.5   0.0    2.1  2  DUF4397   Domain of unknown function (DUF4397)


Domain annotation for each model (and alignments):
>> DUF4397  Domain of unknown function (DUF4397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   5.7e-33     1e-28       4     120 ..      34     151 ..      32     152 .. 0.95
   2 !   13.5   0.0   5.4e-06     0.096      22      85 ..     158     217 ..     153     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 5.7e-33
                           DUF4397   4 rvvhaspdapsvDvyvngkkvlknva.ygdvtgylqvpaGqytielnpagnkikagttvallnvditleagteytva 79 
                                       r+vh+spdap vDvyv+g+ ++++v+ + + t+yl+  +G+yt++++pag+    g ++a+l+ ++t+e+g+ ytva
  gi|300713062|ref|YP_003738874.1|  34 RIVHLSPDAPIVDVYVDGELWFEDVEpFVTQTPYLEYVPGTYTVQFTPAGE----GPEAAVLESEVTFEEGR-YTVA 105
                                       89***********************9788888******************9....5667789999******7.**** PP

                           DUF4397  80 avgsa.....aalellvleddstkpaagtarvrfvnlspdapavDV 120
                                       avg+a     + l+++ +edd+t++++g ar+r +++s dap vDV
  gi|300713062|ref|YP_003738874.1| 106 AVGEAcagsdEPLRIVSFEDDTTPTSSGHARLRGIHASVDAPRVDV 151
                                       ********9999*********************************9 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.4e-06
                           DUF4397  22 kkvlknvaygdvtgylqvpaGqytielnpagnkikagttvallnvditleagteytvaavgsa...a 85 
                                       ++v++n+ +g+  +y +v+a +  +e+      ++++t  +++  +i +eag  ytv+a+g +   +
  gi|300713062|ref|YP_003738874.1| 158 ETVFENLGFGEG-DYGEVAADETVLEI------RESATGEIVERFEIGFEAGAVYTVFALGYVdptT 217
                                       455777777764.899***********......667778889*******************984332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1997.29
//
Query:       gi|300713063|ref|YP_003738875.1|  [L=91]
Description: transcriptional regulator, ArsR family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-10   38.2   0.0    1.4e-09   37.6   0.0    1.3  1  HTH_5     Bacterial regulatory protein, arsR family
    5.4e-08   32.8   0.0      9e-08   32.1   0.0    1.3  1  HTH_20    Helix-turn-helix domain
    0.00011   22.0   0.0    0.00028   20.7   0.0    1.6  2  TrmB      Sugar-specific transcriptional regulator TrmB
    0.00022   21.0   0.0    0.00032   20.5   0.0    1.2  1  MarR_2    MarR family
    0.00033   20.6   0.0    0.00039   20.3   0.0    1.2  1  HTH_45    Winged helix-turn-helix
     0.0022   17.8   0.0     0.0031   17.3   0.0    1.2  1  HTH_IclR  IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.5   1.2       0.18   11.7   0.3    2.2  2  DUF1601   Protein of unknown function (DUF1601)
      0.032   14.6   0.0      0.043   14.2   0.0    1.3  1  Rrf2      Transcriptional regulator
      0.042   13.4   0.0       0.13   11.9   0.0    1.8  1  HTH_24    Winged helix-turn-helix DNA-binding
      0.099   13.0   0.0       0.14   12.5   0.0    1.3  1  FaeA      FaeA-like protein
       0.12   12.1   0.0       0.16   11.6   0.0    1.2  1  RP-C      Replication protein C N-terminal domain


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   8.8e-13   1.4e-09       2      47 .]      16      61 ..      15      61 .. 0.98

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.8e-13
                                      HHHHHHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                             HTH_5  2 ptRlkILklLaegelcvcelaeelglsqstvShHLkkLreaGLVek 47
                                      p+R+++L++ +e+++ + + ae+l+l   t++hHL +L + G+V+k
  gi|300713063|ref|YP_003738875.1| 16 PNRVRLLQAINERPRNANQFAEALDLDYTTIRHHLEVLIDNGMVRK 61
                                      99******************************************86 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   5.5e-11     9e-08      10      55 ..      16      60 ..      14      64 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 5.5e-11
                                      HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
                            HTH_20 10 PvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                                      P R r+l+a+  ++++ a+++ae+ldl+ +t+++HL+vL + g v+
  gi|300713063|ref|YP_003738875.1| 16 PNRVRLLQAI-NERPRNANQFAEALDLDYTTIRHHLEVLIDNGMVR 60
                                      99********.********************************998 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.7e-07   0.00028      19      59 ..      26      66 ..      19      76 .. 0.87
   2 ?   -1.3   0.0       1.2     2e+03      23      32 ..      81      90 ..      75      91 .] 0.79

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.7e-07
                                      HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTT CS
                              TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVerekgrp 59
                                      ++ p +a++ ae+l+++++++   L+ L+d G+V+++ g +
  gi|300713063|ref|YP_003738875.1| 26 NERPRNANQFAEALDLDYTTIRHHLEVLIDNGMVRKSGGDY 66
                                      67899******************************998774 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
                                      CHHCHHCCCT CS
                              TrmB 23 atadeiaeel 32
                                       t+++i+e++
  gi|300713063|ref|YP_003738875.1| 81 ETVETISEQV 90
                                      6999999987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     2e-07   0.00032       5      56 ..      16      64 ..      11      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2e-07
                                      HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
                            MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                                      p   r+L a+  rp+   ++++ a++l+l+  ++  +l+ L + G+v+++ g
  gi|300713063|ref|YP_003738875.1| 16 PNRVRLLQAINERPR---NANQFAEALDLDYTTIRHHLEVLIDNGMVRKSGG 64
                                      66789*********6...******************************9865 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.4e-07   0.00039      11      56 ..      21      66 ..      18      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.4e-07
                            HTH_45 11 ILeaisegeakkTkimykanLsykllnkYLdmLvekglikkskekY 56
                                      +L+ai+e   +  +   + +L+y +++  L+ L+++g+++ks++ Y
  gi|300713063|ref|YP_003738875.1| 21 LLQAINERPRNANQFAEALDLDYTTIRHHLEVLIDNGMVRKSGGDY 66
                                      7999*999*******************************9888876 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.9e-06    0.0031       7      51 ..      20      62 ..      18      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-06
                                      HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
                          HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                                      ++L+a++e+p+     + A++++l  +t +++L  L+  G+v++ 
  gi|300713063|ref|YP_003738875.1| 20 RLLQAINERPRN--ANQFAEALDLDYTTIRHHLEVLIDNGMVRKS 62
                                      89*********7..9****************************86 PP

>> DUF1601  Protein of unknown function (DUF1601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00011      0.18      16      28 ..      20      35 ..      19      36 .. 0.97
   2 ?    2.4   0.0     0.091   1.5e+02      15      23 ..      40      48 ..      38      52 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                           DUF1601 16 rLlvaIr...rnaerF 28
                                      rLl+aI+   rna++F
  gi|300713063|ref|YP_003738875.1| 20 RLLQAINerpRNANQF 35
                                      9*************** PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.091
                           DUF1601 15 erLlvaIrr 23
                                      + ++ +Ir+
  gi|300713063|ref|YP_003738875.1| 40 DLDYTTIRH 48
                                      679*****9 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.6e-05     0.043      22      70 ..      26      74 ..      18      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-05
                                      TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSH CS
                              Rrf2 22 eeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakp 70
                                      +e+p ++++ ae  ++  + +++ l+ L  +g+v+   G  G + L+ +
  gi|300713063|ref|YP_003738875.1| 26 NERPRNANQFAEALDLDYTTIRHHLEVLIDNGMVRKSGGDYGAVYLTTE 74
                                      45667899**********************************9999876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.8e-05      0.13      24      48 .]      36      60 ..      16      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.8e-05
                            HTH_24 24 AerlglSpstvnrrlkrLeeeGlIk 48
                                      Ae+l+l  +t++ +l+ L+++G ++
  gi|300713063|ref|YP_003738875.1| 36 AEALDLDYTTIRHHLEVLIDNGMVR 60
                                      9*********************996 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.7e-05      0.14      14      51 ..      28      65 ..      18      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.7e-05
                                      ----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE--S CS
                              FaeA 14 apckTreiAdalglsaYQaRyYLeqLekegkikrspvr 51
                                       p   ++ A+al l    +R+ Le L   g++++s   
  gi|300713063|ref|YP_003738875.1| 28 RPRNANQFAEALDLDYTTIRHHLEVLIDNGMVRKSGGD 65
                                      67778889******9999****************9755 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.7e-05      0.16      72     101 ..      29      59 ..      24      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.7e-05
                              RP-C  72 psNaqLs.ralglsestlrrhlaaLveaGli 101
                                       p+Na++  +al+l  +t+r+hl  L++ G++
  gi|300713063|ref|YP_003738875.1|  29 PRNANQFaEALDLDYTTIRHHLEVLIDNGMV 59 
                                       66776666*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 751.07
//
Query:       gi|300713064|ref|YP_003738876.1|  [L=133]
Description: hypothetical protein HacjB3_18728 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1095.89
//
Query:       gi|300713065|ref|YP_003738877.1|  [L=47]
Description: hypothetical protein HacjB3_18733 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.8    7.8   4.3          2    8.3   0.1    2.0  2  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.3     0.028     5e+02       8      23 ..       1      16 [.       1      17 [. 0.84
   2 ?    8.3   0.1   0.00011         2       5      32 ..      20      45 ..      18      46 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.028
                              B12D  8 Lfvfigagvggavfyl 23
                                      +f+++  ++++a+f l
  gi|300713065|ref|YP_003738877.1|  1 MFAIVVSVASIAAFLL 16
                                      5899999999999975 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00011
                              B12D  5 liPLfvfigagvggavfylvRllltnPD 32
                                      l PL +++  +  + vfyl++ +lt++D
  gi|300713065|ref|YP_003738877.1| 20 LLPLAAAV--ASKLGVFYLIYVVLTKSD 45
                                      56666665..667889*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 354.66
//
Query:       gi|300713066|ref|YP_003738878.1|  [L=56]
Description: hypothetical protein HacjB3_18738 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   13.6   0.2      0.056   13.4   0.2    1.2  1  DUF5049   Domain of unknown function (DUF5049)


Domain annotation for each model (and alignments):
>> DUF5049  Domain of unknown function (DUF5049)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   3.1e-06     0.056      14      34 ..       7      27 ..       1      34 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-06
                           DUF5049 14 dtGltNMfdvaaVqriAeerg 34
                                      dtG+tNM+d +aV  + e+r+
  gi|300713066|ref|YP_003738878.1|  7 DTGATNMMDREAVLTLSEQRE 27
                                      79************9998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.28s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 411.92
//
Query:       gi|300713067|ref|YP_003738879.1|  [L=181]
Description: hypothetical protein HacjB3_18743 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-36  126.1   0.0    1.3e-36  125.8   0.0    1.1  1  Ferritin_2    Ferritin-like domain
     0.0031   17.9   0.1      0.061   13.7   0.0    2.4  3  Rubrerythrin  Rubrerythrin
  ------ inclusion threshold ------
        0.1   12.1   0.1       0.15   11.5   0.1    1.2  1  DUF5560       Family of unknown function (DUF5560)


Domain annotation for each model (and alignments):
>> Ferritin_2  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.0   2.1e-40   1.3e-36       1     135 [.       9     154 ..       9     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 2.1e-40
                        Ferritin_2   1 sdvdiLnfAlnlEyleaafYtaalegasldd..........kalldaevrevaeeiakheeaHveflkaale..Gaa 65 
                                       +d+ iLnfA +lE+lea fY ++l++++++            + ++++  + ++ i++hee+H+e+l +++e  G++
  gi|300713067|ref|YP_003738879.1|   9 DDIGILNFARTLEFLEARFYREGLDTIGEQGlrcsdplqavGGDVQDRAFDDLRVIQEHEETHAEVLGETIEdlGGE 85 
                                       599************************9999********999999******************************** PP

                        Ferritin_2  66 avakptfdfafdpfadeksflalaavlEdvgvsAYlgaapllsnkelltaaasIlsvEArHaavirtllg 135
                                       ++++p+fdf  ++++d+ +fl++aa lE +g+ AY gaap+++n++l+  a+sI+svEArH ++++ l g
  gi|300713067|ref|YP_003738879.1|  86 PIEEPEFDF-GTATEDPMEFLQTAALLEATGTGAYAGAAPMIENADLIPPALSIHSVEARHTSFLNVLNG 154
                                       *********.99999************************************************9998765 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.056   3.4e+02       2      19 ..      13      30 ..      12      41 .. 0.85
   2 !   13.7   0.0     1e-05     0.061      40     101 ..      66     127 ..      61     149 .. 0.90
   3 ?   -2.0   0.0      0.73   4.4e+03      42      55 ..     142     155 ..     135     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.056
                                      HHHHHHHHHHHHHHHHHH CS
                      Rubrerythrin  2 iLekAiagEssarrlYke 19
                                      iL+ A + E+ + r+Y+e
  gi|300713067|ref|YP_003738879.1| 13 ILNFARTLEFLEARFYRE 30
                                      7999************98 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1e-05
                                       HHHHHHHHHHHHHHHHCSTTHH.B.SSBBS-------TTGGHHHHHHHHHHHHHHHHHCHHH CS
                      Rubrerythrin  40 eeEreHakilnklleklepelelevkekvreyaeakpkflttaknLeeaiegayaeeeemyr 101
                                       e E+ Ha++l + +e+l +e   e++ +  +++e + +fl ta  Le+   gaya    m++
  gi|300713067|ref|YP_003738879.1|  66 EHEETHAEVLGETIEDLGGEPIEEPEFDFGTATEDPMEFLQTAALLEATGTGAYAGAAPMIE 127
                                       78*********************************************888888887776665 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.73
                                       HHHHHHHHHHHHHH CS
                      Rubrerythrin  42 EreHakilnkllek 55 
                                       E++H  +ln l ++
  gi|300713067|ref|YP_003738879.1| 142 EARHTSFLNVLNGE 155
                                       78888888776665 PP

>> DUF5560  Family of unknown function (DUF5560)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.5e-05      0.15      56      94 ..     103     141 ..      84     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.5e-05
                           DUF5560  56 aflaqstllestlegapewaaphpeeqrrsppacsqhtp 94 
                                        fl  ++lle+t  ga   aap  e+    ppa s h+ 
  gi|300713067|ref|YP_003738879.1| 103 EFLQTAALLEATGTGAYAGAAPMIENADLIPPALSIHSV 141
                                       699999*****************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1379.78
//
Query:       gi|300713068|ref|YP_003738880.1|  [L=149]
Description: GNAT family acetyltransferase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-15   56.9   0.0    2.7e-15   56.6   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.3e-11   42.6   0.0    5.9e-11   42.4   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    4.2e-10   39.9   0.1    5.9e-10   39.4   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.1e-07   30.3   0.0      5e-07   29.6   0.0    1.4  1  FR47             FR47-like protein
    5.8e-05   23.3   0.0    7.3e-05   23.0   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
     0.0012   18.9   0.0     0.0023   18.0   0.0    1.4  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.033   14.3   0.0    1.2  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
      0.099   12.6   0.0       0.12   12.3   0.0    1.2  1  Tail_P2_I        Phage tail protein (Tail_P2_I)


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.2e-18   2.7e-15      13     117 .]      26     134 ..      13     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 1.2e-18
                                       HHHHHHHHHHH....HHHHHHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHH CS
                    Acetyltransf_1  13 fppnedaseee....feesfsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlea 84 
                                       +pp+ed++ +e    +    +++++ +++ a+  gel+G ++++  ++  g++ y+ ++ V p+ +++G+G++L+ +
  gi|300713068|ref|YP_003738880.1|  26 EPPWEDDWTDEtarrRLSQIIETPGyRGYGASVRGELVGLVMGNLEQWYTGEHFYLKEMCVCPSQQRHGIGTTLIAH 102
                                       266666666665552333355566689999******************99*************************** PP

                                       HHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
                    Acetyltransf_1  85 leerareegikkivlaveedndaairlYeklGF 117
                                       l+e + +e +++++l  ++   +a+++Ye  GF
  gi|300713068|ref|YP_003738880.1| 103 LIETLQKESVERVYLL-TMQESPARAFYENNGF 134
                                       ***9999999****94.57778******99999 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.6e-14   5.9e-11      18     111 ..      38     139 ..      11     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.6e-14
                   Acetyltransf_10  18 spealrerieegealllvaeeggkivGvi....el.rdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikl 87 
                                       ++ +l++ ie++ +  ++a + g++vG +    e  ++g+  ++  ++V p++++ Gig+ L+ +++e ++k+  + 
  gi|300713068|ref|YP_003738880.1|  38 ARRRLSQIIETPGYRGYGASVRGELVGLVmgnlEQwYTGEhfYLKEMCVCPSQQRHGIGTTLIAHLIETLQKESVER 114
                                       4577888899****************999665433344447788999***********************9999998 PP

                   Acetyltransf_10  88 .eltvnaspyavpfYeklGFkavge 111
                                         l   + + a++fYe+ GF+  ++
  gi|300713068|ref|YP_003738880.1| 115 vYLLTMQESPARAFYENNGFRLDEQ 139
                                       7666666669**********97765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   2.7e-13   5.9e-10      10      75 ..      58     135 ..      37     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 2.7e-13
                                       ETTEEEEEEEEEEES......TCTEEEEE-GGGTTSSHHHHHHHH.TT....SEEEEE.EEEE...THHHHHHHHHH CS
                    Acetyltransf_7  10 ddgkivGfialslld......aeitrlaVdpeyrgkGiGraLlea.ae....kgiile.qlel...naekaikfYek 71 
                                         g+ vG +   l++      +++++++V p+ +++GiG+ L+++ +e    +    + +++l   ++++a++fYe 
  gi|300713068|ref|YP_003738880.1|  58 VRGELVGLVMGNLEQwytgehFYLKEMCVCPSQQRHGIGTTLIAHlIEtlqkE---SVeRVYLltmQESPARAFYEN 131
                                       45778887777777787766556666******************841134222...22344554444448999**** PP

                                       TTEE CS
                    Acetyltransf_7  72 lGFe 75 
                                       +GF+
  gi|300713068|ref|YP_003738880.1| 132 NGFR 135
                                       ***7 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.2e-10     5e-07      23      82 ..      80     139 ..      53     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.2e-10
                                       SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEEEE CS
                              FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfekiee 82 
                                       +l  ++v p+ +r G g+ l++ l++ + ++  + + +   +++p++++ye  Gf+++e+
  gi|300713068|ref|YP_003738880.1|  80 YLKEMCVCPSQQRHGIGTTLIAHLIETLQKESVERVYLLTMQESPARAFYENNGFRLDEQ 139
                                       5889******************************99********************9865 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.2e-08   7.3e-05      34     136 ..      35     136 ..      19     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 3.2e-08
                    Acetyltransf_4  34 veefekfleal.dsekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeq 109
                                        e + ++l+++ ++++ + +++   +++vG   ++  ++ +  ++  l+   +   ++  g+g  li++l++ l++ 
  gi|300713068|ref|YP_003738880.1|  35 DETARRRLSQIiETPGYRGYGASVRGELVGLVMGNLEQW-YTGEHFYLKEMCVCPSQQRHGIGTTLIAHLIETLQKE 110
                                       5677899***9779****************999885566.555555555444446899******************* PP

                    Acetyltransf_4 110 nienllaeiaspnensiqfhkalGFel 136
                                       ++e+ +  ++ +++++ +f+++ GF+l
  gi|300713068|ref|YP_003738880.1| 111 SVERVYLLTM-QESPARAFYENNGFRL 136
                                       ******9999.99************97 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     1e-06    0.0023       8     126 ..      11     135 ..       5     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1e-06
                                       GGHHHHHHHHHHHTT----H......HHHHHHHHHHTTS..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE CS
                    Acetyltransf_9   8 edldevlellkyaFqdeespl...e.eireyfrkllees..rvlgaedngelvgqlallplelnvpGktlkaagvtg 78 
                                       + lde ++l +++F++ + +    + ++r+++++++e    r +ga   gelvg ++ +  ++++++      ++  
  gi|300713068|ref|YP_003738880.1|  11 DNLDEGVQLYRAVFNEPPWEDdwtDeTARRRLSQIIETPgyRGYGASVRGELVGLVMGNLEQWYTGEHF----YLKE 83 
                                       678889999999**99998877663355555566666424699********************999765....6788 PP

                                       EEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--....SSHHHHHTTT-E CS
                    Acetyltransf_9  79 VavapehrgrgvlskLlaraleemreegqplsllfP....ssipiYrrfGye 126
                                        +v p ++++g+ + L+a+++e +++e ++ ++l       ++++Y+  G++
  gi|300713068|ref|YP_003738880.1|  84 MCVCPSQQRHGIGTTLIAHLIETLQKESVERVYLLTmqesPARAFYENNGFR 135
                                       9**************************9999999884443335899998886 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.5e-05     0.033      29     136 ..      11     120 ..       2     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
                    Acetyltransf_6  29 edleallelfraqwarrpdvfadpltraflrdllaalaargalrlyvlrldgrpvAvalg....lrsgdrlyywlgg 101
                                       + l++ ++l+ra +++      d++t +  r+ l++  +    r y +++ g++v+ ++g     + g+++y+  + 
  gi|300713068|ref|YP_003738880.1|  11 DNLDEGVQLYRAVFNEP-PWE-DDWTDETARRRLSQIIETPGYRGYGASVRGELVGLVMGnleqWYTGEHFYLKEMC 85 
                                       56888899999999999.444.68888888888888888889999999999999999988333346799******** PP

                    Acetyltransf_6 102 ydpelaklspgllllweliedaaeeGlrrfdlggg 136
                                       + p+  ++++g+ l+++lie +  e ++r+ l++ 
  gi|300713068|ref|YP_003738880.1|  86 VCPSQQRHGIGTTLIAHLIETLQKESVERVYLLTM 120
                                       *****************************999875 PP

>> Tail_P2_I  Phage tail protein (Tail_P2_I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.5e-05      0.12      51     100 ..      28      76 ..      20     114 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.5e-05
                         Tail_P2_I  51 gWdeawseeakRavikeaielhrlkGTpaavrrvlealgfgveitEWwey 100
                                        W+++w++e+ R+ +++ ie   ++G  a+vr  l  l + ++++ W+  
  gi|300713068|ref|YP_003738880.1|  28 PWEDDWTDETARRRLSQIIETPGYRGYGASVRGELVGLVM-GNLEQWYTG 76 
                                       5*******************************98876655.577888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1264.29
//
Query:       gi|300713069|ref|YP_003738881.1|  [L=62]
Description: hypothetical protein HacjB3_18753 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   15.0   2.0        2.5    8.2   0.7    2.2  2  YyzF      YyzF-like protein


Domain annotation for each model (and alignments):
>> YyzF  YyzF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0   0.00049       8.8      31      47 ..      20      38 ..      12      39 .. 0.76
   2 ?    8.2   0.7   0.00014       2.5       1      11 [.      48      58 ..      48      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00049
                              YyzF 31 klsktC..efCekpAtYlV 47
                                      + +++C  + C+++A Y V
  gi|300713069|ref|YP_003738881.1| 20 NTPRSCatDDCDHEADYYV 38
                                      4788894446*******98 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00014
                              YyzF  1 vCeeHvElAlD 11
                                      vCeeH+E+  +
  gi|300713069|ref|YP_003738881.1| 48 VCEEHLEETVE 58
                                      8******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 522.67
//
Query:       gi|300713070|ref|YP_003738882.1|  [L=243]
Description: geranylgeranylglyceryl phosphate synthase family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-36  123.5   0.0    1.3e-35  122.9   0.0    1.1  1  PcrB          PcrB family
     0.0011   18.4   0.0     0.0019   17.7   0.0    1.3  1  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0   1.5e-39   1.3e-35       6     217 ..       5     234 ..       2     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 1.5e-39
                                       TS...EEEEE-TTSS-CHHHHHHHHCTT-SEEEEECSTCHHHHHHHHHHHHHCTS..SS-EEEEESSGGG--TT... CS
                              PcrB   6 er...hltklDPeeenpdEiveiviesgtDavmigGsqsvtldntvrllkkvsri..klPivlepsnvegvvry... 74 
                                       +    h+tk+DP + +p +   ++  ++tD +++gGs++vt++nt++++++vs    ++P++ ep   + v+ +   
  gi|300713070|ref|YP_003738882.1|   5 WPaitHITKIDPAKPLPTDL-GVL--EYTDLIIVGGSDNVTEENTLTTIREVSDSipEIPVLQEPYSSQQVSVEtia 78 
                                       44444***********9874.444..9*************************874348*******999999864333 PP

                                       .SSEEEEEEETTBSSTTTTTH.........HHHHHHHHHHH.HHH.CTEEEEEEEEEBTTTSHHHHHTTB-B-TTHH CS
                              PcrB  75 .aDalFvmsllnsanadWivg.........ahalglkkvkk.lie.seeilaegYlvvePdskvaavteakvdlnke 139
                                        +D lFv+++ n   a+++            + +gl    + l + +e i a gY++ + ds++a  + ++++l  +
  gi|300713070|ref|YP_003738882.1|  79 aIDQLFVPAIYNGDHAHFVGKhlqmftqlsSDFEGLLGQSEsLASvAETICAVGYVIQNVDSHAASTAGVTAPLSLN 155
                                       38***********9999876689988887744444433333133314667899************************ PP

                                       HHHHHHHHHHHHTT-SEEEEE-TTSSS-HHHHHHHHHHHSSSEEEEESS--SHHHHHHHHCC.SSEEEE-CHHHHHH CS
                              PcrB 140 diaayallaakllglrliYlEasGaledveevialkkklekarlivGGGirsaEkAkevvea.ADvivvGnvveekd 215
                                       +i  +al ++ +++++l+Y+E+sG  +   +v a+  +l+++ l++GGGi+sa kA+ v+   AD+ivvG+  +e+ 
  gi|300713070|ref|YP_003738882.1| 156 EIRGAALATEVFYDFPLFYVEYSGQFGGTAAVNAVATVLSETYLLYGGGIDSAQKANAVLSSgADAIVVGDCFHEDR 232
                                       *******99******************************************************************99 PP

                                       HC CS
                              PcrB 216 er 217
                                       e 
  gi|300713070|ref|YP_003738882.1| 233 EA 234
                                       54 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.1e-07    0.0019      62     114 ..     187     237 ..     178     241 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.1e-07
                                       HHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHH CS
                      His_biosynth  62 ldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavknpelike 114
                                        ++v+++++e    +  GGGI s ++++++l++gad +++g +  ++ e  ++
  gi|300713070|ref|YP_003738882.1| 187 VNAVATVLSE--TYLLYGGGIDSAQKANAVLSSGADAIVVGDCFHEDREAYRQ 237
                                       4455555555..77899************************999888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1799.61
//
Query:       gi|300713071|ref|YP_003738883.1|  [L=110]
Description: hypothetical protein HacjB3_18763 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-05   23.6   0.0    6.8e-05   22.9   0.0    1.4  1  DUF1724        Domain of unknown function (DUF1724)
  ------ inclusion threshold ------
       0.03   14.5   0.0      0.039   14.1   0.0    1.3  1  Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> DUF1724  Domain of unknown function (DUF1724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   7.6e-09   6.8e-05       7      60 ..      48     102 ..      42     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7.6e-09
                           DUF1724   7 deeikplsltvtDk.flslslfdkdgkydhk.dlisfdesAlkWGeeLFeyYlkrS 60 
                                       de + +l++ + D   ++++ +++ g+  h+  ++s+ e+ ++WG+e+++ +++++
  gi|300713071|ref|YP_003738883.1|  48 DERL-TLGIGLYDEqKIAIGTYNEVGEGRHTaIIVSTHEDLIEWGTEIYQACRQQA 102
                                       5556.566666665489**************99********************998 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.3e-06     0.039      34      70 ..       3      39 ..       1      64 [. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.3e-06
                     Lipase_GDSL_3 34 revvnLgfsGnalleaeladvlaevdasvfvldllpN 70
                                      + +++Lg+ G++ ++a + + +a+ +   ++ld+ + 
  gi|300713071|ref|YP_003738883.1|  3 YRLLSLGMHGEGIIDASVYEKIAQNEDMQYLLDTSSY 39
                                      5689*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 877.96
//
Query:       gi|300713072|ref|YP_003738884.1|  [L=400]
Description: cytochrome P450 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-78  264.3   0.1    2.2e-78  264.1   0.1    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.1   0.1   1.2e-82   2.2e-78      41     447 ..       4     381 ..       1     393 [. 0.90

  Alignments for each domain:
  == domain 1  score: 264.1 bits;  conditional E-value: 1.2e-82
                                       ETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHTSHSTTTHHHH CS
                              p450  41 lgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptltsfgklsleel 117
                                       +gs ++  l++pe++++vl+++ ++f +      ++    +  g+g+l ++ ++w+ +R++l p +  +    ++++
  gi|300713072|ref|YP_003738884.1|   4 PGSNDIYALCHPEYFEHVLVAEVDSFTK---TEDYQ----QAFGNGLLSTDDSQWRTQRNTLQPLFYRD---HIMDF 70 
                                       57888999**************544444...44455....4899**********************988...68999 PP

                                       HHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCC CS
                              p450 118 veeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllll 194
                                        ++++ + +++l++ ++ + + di   + + ++++++s+lFg++   ++  ++ el +a + +++++   ++  ++l
  gi|300713072|ref|YP_003738884.1|  71 ADQMSMCTQRRLETWHEGQ-THDIESEMKNLTFEILFSTLFGRE---VQPGEDAELREAADGINDWF---VPSSWML 140
                                       9999999999999888888.699********************9...55667789**********99...4445777 PP

                                       CHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHH CS
                              p450 195 fpllkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlell 271
                                       ++   ++pt+ +r++k+   +l + +++++ ++re+  ++    +d l+ l   +  + + + ls++e+  ++ ++ 
  gi|300713072|ref|YP_003738884.1| 141 PN---WIPTPARRRFKQSKSRLREEVRAIFADNREQSLTE---SKDILSQLRRVH--NTD-AGLSKKEIEDQLVTMV 208
                                       66...569**********************9999999999...688888888886..333.58************** PP

                                       HHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSS CS
                              p450 272 faGvdTtsstlswaLyeLaknPevqeklreEidevlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtk 348
                                       faG++Tt+ +l++a y L ++Pe+ ++ ++E+d vl + r+pt++dl +l++++ ++kEtLRl p+v+ ++pR++++
  gi|300713072|ref|YP_003738884.1| 209 FAGYETTAVALAFAWYSLSDDPEIRREFHQELDMVLDG-RTPTFNDLPELEVTERIVKETLRLFPPVH-TIPRRTKR 283
                                       ************************************77.58***************************.******** PP

                                       CEEETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHH CS
                              p450 349 dvvirgylipkGtevivnlyalhrdpevfpnPeeFdpeRFldekgnskrksfaflPFGaGpRnCiGerlArmelklf 425
                                       +v+++g+++p+G ev + + + hrdp+++ nP eF+p+R+ d+ + ++ ++f ++PFG G+R CiG+ +A +e k++
  gi|300713072|ref|YP_003738884.1| 284 PVEFDGFHVPEGEEVHLAVLHAHRDPTIYANPTEFQPDRWKDDLE-DEIHDFGYIPFGGGRRTCIGREFALLEAKIV 359
                                       *******************************************99.67***************************** PP

                                       HHHHHHHEEEEESTSTSGGEEE CS
                              p450 426 latlLqnFevelqpetdpppil 447
                                       lat+ q+F+++ ++ td++   
  gi|300713072|ref|YP_003738884.1| 360 LATIGQHFQLTADHTTDIELEP 381
                                       ***********99988877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3089.96
//
Query:       gi|300713073|ref|YP_003738885.1|  [L=283]
Description: hypothetical protein HacjB3_18773 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-07   30.2   2.6    1.3e-06   28.9   2.6    1.7  1  SlyX          SlyX
      0.001   17.9   0.3     0.0015   17.4   0.3    1.1  1  HAUS5         HAUS augmin-like complex subunit 5
     0.0032   17.3   2.5        1.5    8.7   0.2    2.6  2  HSBP1         Heat shock factor binding protein 1
     0.0081   16.1   1.8      0.014   15.3   1.8    1.4  1  PhaP_Bmeg     Polyhydroxyalkanoic acid inclusion protein (Pha
  ------ inclusion threshold ------
       0.02   14.5   3.7      0.033   13.8   3.7    1.3  1  HAUS-augmin3  HAUS augmin-like complex subunit 3
       0.02   14.9   2.1      0.035   14.2   2.1    1.4  1  DivIVA        DivIVA protein
      0.031   14.5   4.4      0.062   13.5   3.9    1.9  1  XhlA          Haemolysin XhlA
      0.031   14.7   4.4       0.37   11.2   1.1    2.4  2  FlaC_arch     Flagella accessory protein C (FlaC)
      0.035   13.8   2.7        0.2   11.3   1.2    2.3  2  DUF4988       Domain of unknown function
       0.04   13.6   3.7      0.077   12.7   3.7    1.5  1  SHE3          SWI5-dependent HO expression protein 3
      0.042   13.9   1.4       0.11   12.6   1.4    1.7  1  BRE1          BRE1 E3 ubiquitin ligase
      0.045   12.6   3.3      0.067   12.1   3.3    1.2  1  Spc7          Spc7 kinetochore protein
      0.062   13.7   4.7       0.11   12.9   4.7    1.4  1  HrpB7         Bacterial type III secretion protein (HrpB7)
      0.067   13.2   1.8       0.14   12.2   1.8    1.5  1  DUF1664       Protein of unknown function (DUF1664)
      0.074   13.5   3.1       0.38   11.3   2.1    2.2  2  Spectrin      Spectrin repeat
      0.076   12.9   4.8       0.14   12.1   4.8    1.4  1  Wtap          WTAP/Mum2p family
      0.078   12.6   0.5       0.14   11.8   0.5    1.4  1  TPD52         Tumour protein D52 family
       0.11   12.9   0.7       0.27   11.7   0.7    1.7  1  NPV_P10       Nucleopolyhedrovirus P10 protein
       0.12   12.2   4.8      0.078   12.9   2.4    1.8  2  DASH_Spc19    Spc19
       0.15   11.5   6.5       0.28   10.6   6.5    1.4  1  DUF3552       Domain of unknown function (DUF3552)
       0.22   11.6   2.4        2.2    8.4   0.3    2.4  2  Med9          RNA polymerase II transcription mediator comple
       0.26   11.9   3.9       0.65   10.6   3.9    1.7  1  Syntaxin-6_N  Syntaxin 6, N-terminal
       0.28   11.7   4.7        7.9    7.0   0.1    2.4  2  DUF16         Protein of unknown function DUF16
       0.31   10.3   1.9       0.47    9.7   1.9    1.3  1  DUF4407       Domain of unknown function (DUF4407)
       0.33   10.2   3.0       0.49    9.6   3.0    1.2  1  CorA          CorA-like Mg2+ transporter protein
       0.45   10.8   3.2       0.85    9.9   3.2    1.5  1  DUF948        Bacterial protein of unknown function (DUF948)
        2.9    8.2  11.5       0.86    9.9   0.6    3.5  4  ABC_tran_CTD  ABC transporter C-terminal domain
        5.9    6.8   9.0        0.4   10.6   0.7    2.8  3  PKcGMP_CC     Coiled-coil N-terminus of cGMP-dependent protei


Domain annotation for each model (and alignments):
>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   2.6     2e-09   1.3e-06       2      58 ..      33      89 ..      32     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2e-09
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
                              SlyX  2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58
                                       +r++eLE++l+  ed i++L ++vaeq+  + + +++    +e ++el+e++ +++
  gi|300713073|ref|YP_003738885.1| 33 TDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQERELEKN 89
                                      69************************************************9987655 PP

>> HAUS5  HAUS augmin-like complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.3   2.3e-06    0.0015     379     461 ..      16     102 ..       7     123 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.3e-06
                             HAUS5 379 kaslntLrsevqrLeklaaerkealrsLqkkwkkIldFrarvseleeiiraLikansaaka...eleqqpaevrefv 452
                                       +a  +tL   + rLe+l  +  e++++L  k  +I d+++ v+e+++i++a  k++ +  +   el++ ++e +++ 
  gi|300713073|ref|YP_003738885.1|  16 TADNSTLEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREmvrELQERELEKNAHL 92 
                                       678899*********************************************99987655540004444444444443 PP

                             HAUS5 453 q.ekliPafe 461
                                         e++ P+++
  gi|300713073|ref|YP_003738885.1|  93 RwENVYPHKN 102
                                       3255666655 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2    0.0024       1.5      25      44 ..      25      44 ..      22      48 .. 0.87
   2 !    7.8   0.2    0.0044       2.8      34      46 ..      48      60 ..      46      63 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0024
                             HSBP1 25 ilsriDdMssriDdLEksia 44
                                      + +r+++++ r+D+LE+ ++
  gi|300713073|ref|YP_003738885.1| 25 VCDRLEQLTDRVDELETELT 44
                                      678*************9875 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0044
                             HSBP1 34 sriDdLEksiadl 46
                                       riDdLE+++a+ 
  gi|300713073|ref|YP_003738885.1| 48 DRIDDLENTVAEQ 60
                                      6*********985 PP

>> PhaP_Bmeg  Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.8   2.2e-05     0.014      37     119 ..      20     107 ..       5     117 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.2e-05
                         PhaP_Bmeg  37 kalkqqqdlvkeltkalselekeskqltaeledq.....lqkt.venlrskaGnkvednieEwtdkleevsaklekl 107
                                        +l+ + d +++lt+ ++ele e  + +  ++d+      q+t ++ +r+k+Gn   + + E++++  e  a+l   
  gi|300713073|ref|YP_003738885.1|  20 STLEAVCDRLEQLTDRVDELETELTRKEDRIDDLentvaEQDTiLNAVRKKTGNT-REMVRELQERELEKNAHLRWE 95 
                                       589999999999*********9987777665443111223555256789999999.889****************** PP

                         PhaP_Bmeg 108 alspsKssldll 119
                                       ++ p K  +++ 
  gi|300713073|ref|YP_003738885.1|  96 NVYPHKNDFEIT 107
                                       ****99998875 PP

>> HAUS-augmin3  HAUS augmin-like complex subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.7   5.1e-05     0.033      64     142 ..      13      91 ..       3      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.1e-05
                      HAUS-augmin3  64 edvellevileeeeesleaLeqelqeLqkekalklkrlnkLqvqaaslqqelrkleeeekeakkklkeaqeelraen 140
                                       + +++ +++le+  + le+L + ++eL+ e  +k+ r + L+ ++a++   l+++ +++ ++++ ++e+qe   ++n
  gi|300713073|ref|YP_003738885.1|  13 NRPTADNSTLEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQERELEKN 89 
                                       56788889999999*******************************************************99877777 PP

                      HAUS-augmin3 141 ae 142
                                       a 
  gi|300713073|ref|YP_003738885.1|  90 AH 91 
                                       65 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   2.1   5.5e-05     0.035      33     101 ..      21      89 ..      19     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.5e-05
                                       HHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                            DivIVA  33 dyeallkeneelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaeki 101
                                       ++ea++++ e+l+++v+ele++l + +++ ++L++t+  +  + + v++++ +  e++ + +e + ek 
  gi|300713073|ref|YP_003738885.1|  21 TLEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQERELEKN 89 
                                       578899999999999999999999999999999999999999999999999888888877666655554 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.9   9.7e-05     0.062       3      39 ..      33      69 ..      31      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.7e-05
                              XhlA  3 kerlerietkldnleervdkleekaaeaeekiknlee 39
                                       +r+ ++et+l   e+r+d+le+  ae+++ +  + +
  gi|300713073|ref|YP_003738885.1| 33 TDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRK 69
                                      689***************************9988776 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1      0.09        58      15      36 ..      21      42 ..      16      47 .. 0.69
   2 ?   11.2   1.1   0.00058      0.37       1      35 [.      49      83 ..      49      86 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.09
                         FlaC_arch 15 eletvkkeneelsksveelken 36
                                      +le v + +e+l + v+el+ +
  gi|300713073|ref|YP_003738885.1| 21 TLEAVCDRLEQLTDRVDELETE 42
                                      6677777777777777777654 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00058
                         FlaC_arch  1 ridelEnklsklsteletvkkeneelsksveelke 35
                                      rid+lEn + + +t l+ v+k+  + ++ v el+e
  gi|300713073|ref|YP_003738885.1| 49 RIDDLENTVAEQDTILNAVRKKTGNTREMVRELQE 83
                                      9*******************************998 PP

>> DUF4988  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   0.00031       0.2       3      48 ..      27      72 ..      25      88 .. 0.83
   2 ?    1.2   0.0       0.4   2.6e+02      22      54 ..     222     251 ..     215     267 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00031
                           DUF4988  3 ddvndlkdrvaaleeqvkelndniealkklleegkviteveensdg 48
                                      d++++l drv  le+++   +d i+ l++ + e+ +i +  +++ g
  gi|300713073|ref|YP_003738885.1| 27 DRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTG 72
                                      899*************************999777777665555554 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.4
                           DUF4988  22 lndniealkklleegkviteveensdg.syvltl 54 
                                           i+al  l++++ ++ + ++++dg s    +
  gi|300713073|ref|YP_003738885.1| 222 ASRTIDALTDLTKGRLYVKQKNRRKDGlS----Y 251
                                       567899********************943....3 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.7   0.00012     0.077      39     109 ..      21      91 ..       2      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH CS
                              SHE3  39 keskflenlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleee 109
                                       + + + + l +l +  d L + L RKe r+ dle+ ++e  +  + +++++ + ++ +++++++e e +++
  gi|300713073|ref|YP_003738885.1|  21 TLEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQERELEKNAH 91 
                                       4556778999999999***********************************99999999999999877665 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.4   0.00017      0.11       5      71 ..      22      89 ..      19     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
                              BRE1  5 LvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnk.llsKs 71
                                      L+ +    e+l + ++++ +elt+ e+++  le+  a++d    a++++  + +  ++ L++  l+K+
  gi|300713073|ref|YP_003738885.1| 22 LEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQErELEKN 89
                                      56666677899999999999999999999999999999999999999998888888888864145555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.3    0.0001     0.067     199     264 ..      27      93 ..       5     110 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
                              Spc7 199 eeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeae.rvleeckgws 264
                                       ++Le+l ++++el++e+ +k++++++l++ ++e+++ +++++++  +++e ++e + r le++ + +
  gi|300713073|ref|YP_003738885.1|  27 DRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQeRELEKNAHLR 93 
                                       5788888888888888888888888888888888888888888877777777775414555555554 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   4.7   0.00017      0.11      62     146 ..       4      87 ..       1      91 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00017
                             HrpB7  62 lttgsspfsiadylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrraae 138
                                       +tt + ++  +  +a +  ++++ +r++++  ++  ++ +l ++ed++   + ++a  d  ++a+r++    r+  +
  gi|300713073|ref|YP_003738885.1|   4 TTTTK-SIATNRPTADNSTLEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVR 79 
                                       45555.588888899999999999********************************************999999999 PP

                             HrpB7 139 raredaad 146
                                       + +e   +
  gi|300713073|ref|YP_003738885.1|  80 ELQERELE 87 
                                       88887665 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.8   0.00021      0.14      44     114 ..      23      82 ..       9      89 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
                           DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegle 114
                                       e v  +leq+           ++r+d+++++l   ++ + ++++ v+e    l++++++  + +e+v++l+
  gi|300713073|ref|YP_003738885.1|  23 EAVCDRLEQL-----------TDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQ 82 
                                       4455555555...........55555555555555555555555555555555555555555555555554 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.1    0.0006      0.38      34      88 ..      27      84 ..       8      97 .. 0.82
   2 ?    0.6   0.0       1.3   8.1e+02       9      34 ..     198     222 ..     196     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0006
                                      HHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHTTHTTHHHHHHHHHHHHHH CS
                          Spectrin 34 eevqallkkhkaleaelaaqqervkaln...elaeklldeghsaseeieerleelner 88
                                      + +++l ++ ++le el+ +++r+++l+   + ++ +l++  +++ +++e + el+er
  gi|300713073|ref|YP_003738885.1| 27 DRLEQLTDRVDELETELTRKEDRIDDLEntvAEQDTILNAVRKKTGNTREMVRELQER 84
                                      66899999********************998777788888889999999999999886 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.3
                                       HHHHHHHHHHHHHHHHCCSSCSSSHH CS
                          Spectrin   9 dadeleeWieekeellssedlgkdle 34 
                                       da el +W++  e+ + s++++++l+
  gi|300713073|ref|YP_003738885.1| 198 DAGELAQWLRHNEPGV-SKEYSQKLA 222
                                       7889999***999999.777766665 PP

>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.8   0.00022      0.14      80     147 ..      14      83 ..       4      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
                              Wtap  80 kftpdsqtGkrLmakcrvLeqENeELgkvl..eegrvakLeselalqkkfveelkkaleeleelleelee 147
                                       + t+d++t  +   ++ +L +  +EL++ l  +e+r+  Le+ +a q+++++ ++k+  + +e++ el+e
  gi|300713073|ref|YP_003738885.1|  14 RPTADNSTLEAVCDRLEQLTDRVDELETELtrKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQE 83 
                                       66899999999***************99652279*********************************976 PP

>> TPD52  Tumour protein D52 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   0.00022      0.14      29      73 ..      36      82 ..      11     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
                             TPD52 29 reeLkseLakleeeivtLrqvLaakekhlaelkrklGlt..alneLr 73
                                       +eL++eL++ e+ i  L++++a ++  l  +++k G t  ++ eL+
  gi|300713073|ref|YP_003738885.1| 36 VDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTreMVRELQ 82
                                      589**********************************8732345554 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   0.00042      0.27      23      66 ..      22      65 ..       7      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00042
                           NPV_P10 23 lqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66
                                      l++  d++++    v+el+++L +  + +++le++v + + iLn
  gi|300713073|ref|YP_003738885.1| 22 LEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILN 65
                                      44455666666777888888888888888888889988888888 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.4   0.00012     0.078      64     121 ..      31      88 ..      19     107 .. 0.78
   2 ?   -1.5   0.0       3.3   2.1e+03      85     108 ..     225     248 ..     211     266 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHT-XXXXXXXXXX CS
                        DASH_Spc19  64 qieellekaekeleklerreetLkaklelqegrlsnaesskkeeeeseeskeeeeeee 121
                                       q+++ ++++e+el++ e r + L+++++ q+  l+  ++++ ++ e  ++ +e+e e+
  gi|300713073|ref|YP_003738885.1|  31 QLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQERELEK 88 
                                       7788899999999999999999999999999999997776666666666655444433 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.3
                                       HHHHHHHHHHHHHHH......HHH CS
                        DASH_Spc19  85 tLkaklelqegrlsnaesskkeee 108
                                       t+ a  +l +grl  ++++++++ 
  gi|300713073|ref|YP_003738885.1| 225 TIDALTDLTKGRLYVKQKNRRKDG 248
                                       455555666666666444444433 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   6.5   0.00043      0.28      78     144 ..      27      90 ..       6      96 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00043
                           DUF3552  78 nelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrqeLeris 144
                                       + l++l +R+ + e++L rke+ +++ e+++ e++  l++ +++  +++e + el   q++eLe+ +
  gi|300713073|ref|YP_003738885.1|  27 DRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVREL---QERELEKNA 90 
                                       4567777888888888888888888888888888888777666666666666665...444555544 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3    0.0035       2.2      45      80 .]      22      57 ..      18      57 .. 0.89
   2 ?    2.9   0.1      0.18   1.1e+02      25      47 ..      61      83 ..      55      91 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0035
                              Med9 45 lpgidrsveeqeaeieeleeqlakKrelLkkyknrv 80
                                      l+ +    e+  ++++ele +l++K++ + ++ n+v
  gi|300713073|ref|YP_003738885.1| 22 LEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTV 57
                                      6677788999**********************9975 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
                              Med9 25 etktgelrhkLkkarelirelpg 47
                                      +t ++++r+k  + re++rel++
  gi|300713073|ref|YP_003738885.1| 61 DTILNAVRKKTGNTREMVRELQE 83
                                      55567777777788888777765 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.9     0.001      0.65      34      93 ..      23      83 ..       3      94 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.001
                      Syntaxin-6_N 34 s....tseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveevre 93
                                      +    + e+l +  +eL+++l   e  ++dLe+tv  +e++ +  +   k+  + r++v+e++e
  gi|300713073|ref|YP_003738885.1| 23 EavcdRLEQLTDRVDELETELTRKEDRIDDLENTV--AEQD-TILNAVRKKTGNTREMVRELQE 83
                                      14444789999999*********************..4443.4466666666666666666655 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.012       7.9      81     104 .]      18      41 ..       4      41 .. 0.86
   2 ?    5.0   1.5     0.054        35      33      73 ..      47      87 ..      42     116 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.012
                                       ...HHHHHHHHHHHHHHHHHHHC- CS
                             DUF16  81 vdetleliletLqkinkRlDsieg 104
                                        ++tle + + L+++ +R+D++e+
  gi|300713073|ref|YP_003738885.1|  18 DNSTLEAVCDRLEQLTDRVDELET 41 
                                       689*******************97 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.054
                                      HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHH CS
                             DUF16 33 kqrLkkieakvdklgeqinkleqkvekqgekikelkveqka 73
                                      + r+ ++e++v+ ++  +n++ +k  +  e ++el+++   
  gi|300713073|ref|YP_003738885.1| 47 EDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQERELE 87
                                      46788899999999999999999999999999999886544 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.9   0.00074      0.47     126     183 ..      20      72 ..       3     110 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00074
                           DUF4407 126 qlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgp 183
                                       ++ +a  ++l++l++++++l++e++ +e+r+d+l+++++++ +    +    v+ k  
  gi|300713073|ref|YP_003738885.1|  20 STLEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTI--LNA---VRKKTG 72 
                                       33334678999999999999999999999999999999966443..222...222222 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.0   0.00077      0.49     121     203 ..      23     113 ..      13     125 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00077
                              CorA 121 drlfellekleeeldeledel.edstkkeilrelaqlr.rrlvklrralapnrevlkrlla......kaddklldde 189
                                       + + + le+l +++dele+el +++ + ++l+ +++ + + l  +r+   ++re++ +l +       ++ ++    
  gi|300713073|ref|YP_003738885.1|  23 EAVCDRLEQLTDRVDELETELtRKEDRIDDLENTVAEQdTILNAVRKKTGNTREMVRELQEreleknAHLRWENVYP 99 
                                       55556788888888888888886666666666666655255777788888888888655543333334455555566 PP

                              CorA 190 dkeylrdlldeler 203
                                       +k+ ++   d++er
  gi|300713073|ref|YP_003738885.1| 100 HKNDFEITADNFER 113
                                       66666666666666 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.2    0.0013      0.85      26      88 ..      20      82 ..       6      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0013
                            DUF948 26 ktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvseln 88
                                      +tl+++ +++e+l+++vd++ +e+++  + + +l + v e+   ++++ ++ +++ e v+el+
  gi|300713073|ref|YP_003738885.1| 20 STLEAVCDRLEQLTDRVDELETELTRKEDRIDDLENTVAEQDTILNAVRKKTGNTREMVRELQ 82
                                      79999999***********************99999999999999999999999999999885 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6    0.0013      0.86      41      67 ..      27      53 ..       6      54 .. 0.76
   2 ?    4.3   6.9     0.075        48       8      32 ..      41      65 ..      28      97 .. 0.40
   3 ?   -1.1   0.1       3.6   2.3e+03      22      57 ..     149     185 ..     149     188 .. 0.74
   4 ?   -1.4   0.0       4.5   2.9e+03       2       8 ..     249     255 ..     248     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0013
                      ABC_tran_CTD 41 eklaelsaeleeleaeLeelyerWeeL 67
                                      ++l +l+ + +ele+eL ++++r   L
  gi|300713073|ref|YP_003738885.1| 27 DRLEQLTDRVDELETELTRKEDRIDDL 53
                                      678899999999999999999886666 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.075
                      ABC_tran_CTD  8 releeleaeIeaLEeeiaeleaela 32
                                       el + e++I+ LE+  ae ++ l+
  gi|300713073|ref|YP_003738885.1| 41 TELTRKEDRIDDLENTVAEQDTILN 65
                                      2222333333333333333333333 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.6
                      ABC_tran_CTD  22 eeiaeleaeladpelysdp.eklaelsaeleeleaeL 57 
                                       +++a +++ + + +  s+p    ae+ +  e+ ++ L
  gi|300713073|ref|YP_003738885.1| 149 QQLARMDDDMLHSAASSKPmRLAAEVWQDHEQTQSRL 185
                                       5778888888888888888566778888888877766 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4.5
                      ABC_tran_CTD   2 lsykeqr 8  
                                       lsyke+r
  gi|300713073|ref|YP_003738885.1| 249 LSYKERR 255
                                       9****98 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.6    0.0092       5.9       9      27 ..      35      53 ..      34      55 .. 0.89
   2 ?   10.6   0.7   0.00063       0.4       3      23 ..      43      63 ..      41      71 .. 0.84
   3 ?   -0.2   1.3       1.5   9.6e+02      12      21 ..      76      85 ..      66      93 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0092
                         PKcGMP_CC  9 RIRELEkrlaekdeEIqEL 27
                                      R+ ELE  l +k++ I +L
  gi|300713073|ref|YP_003738885.1| 35 RVDELETELTRKEDRIDDL 53
                                      788************9988 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00063
                         PKcGMP_CC  3 lllKDERIRELEkrlaekdeE 23
                                      l  K+ RI +LE+ +ae+d  
  gi|300713073|ref|YP_003738885.1| 43 LTRKEDRIDDLENTVAEQDTI 63
                                      668***************975 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.5
                         PKcGMP_CC 12 ELEkrlaekd 21
                                      E+ + l+e++
  gi|300713073|ref|YP_003738885.1| 76 EMVRELQERE 85
                                      4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1237  (0.0689944); expected 358.6 (0.02)
Passed bias filter:                      782  (0.0436165); expected 358.6 (0.02)
Passed Vit filter:                       180  (0.0100396); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 2201.11
//
Query:       gi|300713074|ref|YP_003738886.1|  [L=237]
Description: deacylase-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-12   47.7   0.0    1.8e-12   46.9   0.0    1.3  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla
  ------ inclusion threshold ------
      0.033   14.0   0.1       0.26   11.1   0.1    2.0  2  Peptidase_M14  Zinc carboxypeptidase


Domain annotation for each model (and alignments):
>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0     2e-16   1.8e-12       1     107 [.      31     122 ..      31     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2e-16
                                       SS-EEEEEE-SSTT-HHHHHHHHHHHHHHHCCC.ESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCCSST CS
                         AstE_AspA   1 sgpkvlisAGvHGnElaGvellrqllkqleead.ilgeitlvplaNppAiaagsRyipidredLNRaFpgrslgrsl 76 
                                       +gp+ +i +G+HGnE++G  ++     +  + +  +g+ +++plaN  Ai+++sR  p  ++dLNR+Fp+ ++    
  gi|300713074|ref|YP_003738886.1|  31 EGPTAVIIGGMHGNEVNGYRVAA----NATNWElDAGRLLVIPLANIVAIERNSRQGP--DGDLNRLFPSGQKP--- 98 
                                       59****************76654....444444489**********************..*********99888... PP

                                       CHHHHHHHHHHHHHHHCHCTC.CCGCEEEEEE CS
                         AstE_AspA  77 dealrateaerladalfaaal.peadivlDLH 107
                                           + + a+ +             d+v+DLH
  gi|300713074|ref|YP_003738886.1|  99 ----ESALARAIWGVV----EdTDPDVVIDLH 122
                                       ....444444444444....445669999999 PP

>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.8e-05      0.26      27      68 ..      18      54 ..      12      58 .. 0.81
   2 ?    0.6   0.0     0.044   3.9e+02     160     198 ..     100     138 ..      77     187 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.8e-05
                                      S-EEEEEEE-SSTTSTTST-CEEEEEE-SSTT-HHHHHHHHH CS
                     Peptidase_M14 27 gRplkvlkisssateaeegkpvvlidggiHarEwigsallly 68
                                      +R+ +v +++ +     ++ p+ +i+gg+H++E+ g  ++ +
  gi|300713074|ref|YP_003738886.1| 18 NRETEVYEVNGP-----KEGPTAVIIGGMHGNEVNGYRVAAN 54
                                      566666666665.....78999*************9988765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.044
                                       SHHHHHHHHHHHHTTEEEEEEEEESSSEEEESHSSSS-- CS
                     Peptidase_M14 160 epetravlefiqkknivlfidlhsysqvilypygstrde 198
                                           ra+  ++++++  ++idlh    + ++ ++++++ 
  gi|300713074|ref|YP_003738886.1| 100 SALARAIWGVVEDTDPDVVIDLHRSRGLFNTHHRWIGQV 138
                                       345677777777888888999998888888888877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1712.35
//
Query:       gi|300713075|ref|YP_003738887.1|  [L=110]
Description: hypothetical protein HacjB3_18783 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   15.2   0.0      0.023   15.1   0.0    1.0  1  PemK_toxin  PemK-like, MazF-like toxin of type II toxin-antit


Domain annotation for each model (and alignments):
>> PemK_toxin  PemK-like, MazF-like toxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.3e-06     0.023       1     107 [.       4     105 ..       4     109 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-06
                                       -TTEEEEEEE-S--TTS--SEEEEEE-S-HHHHCH.SEEEEEEEESSSTSSGCSTTEEEE-HHHCSSSSSSSSEEEE CS
                        PemK_toxin   1 krGeIvlvdldpsrgseqgkrRpvvVvsndafnek.ntvivvpltskdkdkkklpfhveleseildlngldkdswvk 76 
                                       +rG++vl+   p +++e    Rp + +++ + + + +  i + lt++  ++   +  v l++ +++  g +k s ++
  gi|300713075|ref|YP_003738887.1|   4 QRGDVVLAAD-P-FKDESTTGRPFLLINRAETPFHgEQYITLSLTTRTWHD---ERIVLLDEHWQEG-GAPKSSSIM 74 
                                       5999999988.4.5789899**********877665799999999999544...4467777555444.45799**** PP

                                       CCCEEEEEGGGEEEEEEE--HHHHHHHHHHH CS
                        PemK_toxin  77 ldqirtvdkarlrkkigklsredlaevqral 107
                                          + +v ++ + +  g+l++e +++  + l
  gi|300713075|ref|YP_003738887.1|  75 PWSVNSVKTEWITDWQGRLTEEIVDQAVALL 105
                                       ************9999999999998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 860.11
//
Query:       gi|300713076|ref|YP_003738888.1|  [L=125]
Description: hypothetical protein HacjB3_18788 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-06   28.2   0.0    1.9e-06   27.7   0.0    1.3  1  MarR_2           MarR family
      3e-05   24.1   0.0    4.9e-05   23.4   0.0    1.2  1  Fe_dep_repress   Iron dependent repressor, N-terminal DNA bin
    0.00081   19.2   0.0     0.0014   18.5   0.0    1.3  1  TrmB             Sugar-specific transcriptional regulator Trm
     0.0013   18.6   0.0      0.002   18.0   0.0    1.3  1  MarR             MarR family
     0.0073   16.3   0.0      0.014   15.4   0.0    1.5  2  HTH_20           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.029   14.7   0.0       0.05   14.0   0.0    1.4  1  Penicillinase_R  Penicillinase repressor
      0.047   13.7   0.0       0.08   12.9   0.0    1.4  1  HTH_Crp_2        Crp-like helix-turn-helix domain
      0.058   11.8   0.0        2.7    6.3   0.0    2.0  2  Head-tail_con    Bacteriophage head to tail connecting protei
      0.069   13.5   0.0       0.11   12.9   0.0    1.3  1  Rrf2             Transcriptional regulator
      0.074   12.9   0.0      0.099   12.5   0.0    1.3  1  TFIIE_alpha      TFIIE alpha subunit
        0.2   11.7   0.0       0.32   11.0   0.0    1.4  1  Dimerisation     Dimerisation domain
       0.55   10.4   2.8        1.5    8.9   1.5    2.2  3  PNP_phzG_C       Pyridoxine 5'-phosphate oxidase C-terminal d


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.2e-09   1.9e-06      10      53 ..      34      77 ..      33     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.2e-09
                                      HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
                            MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                                      v  +L+r+ ++ +t++e+a+   ++ks++  +l+rL+++ Lv+ 
  gi|300713076|ref|YP_003738888.1| 34 VVRFLYRNNDKAFTPSEIAEGASIKKSSIGTVLRRLQDRELVQH 77
                                      6689**************************************75 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   3.3e-08   4.9e-05       3      57 ..      28      80 ..      26      82 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.3e-08
                                      -HHHHHHHHHHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
                    Fe_dep_repress  3 vestEdYLetIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyveyeky 57
                                      v+++E++ + +Y+++   k  +++++ae   +++ss+   l++L++ ++v+++++
  gi|300713076|ref|YP_003738888.1| 28 VTNAEKVVRFLYRNN--DKAFTPSEIAEGASIKKSSIGTVLRRLQDRELVQHKGD 80
                                      6899**********9..67889******************************975 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.1e-07    0.0014      21      54 ..      44      77 ..      38      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.1e-07
                                      CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEE CS
                              TrmB 21 gpatadeiaeelgvprskvYevLrsLedkGlVer 54
                                      +  t +eiae + + +s++  vLr+L d+ lV+ 
  gi|300713076|ref|YP_003738888.1| 44 KAFTPSEIAEGASIKKSSIGTVLRRLQDRELVQH 77
                                      56899***************************86 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-06     0.002      17      48 ..      45      76 ..      33      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
                                      TEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                              MarR 17 plsvseLakklgvskstvtrvldrLekkGlie 48
                                      + + se+a+  +++ks++ +vl+rL +++l++
  gi|300713076|ref|YP_003738888.1| 45 AFTPSEIAEGASIKKSSIGTVLRRLQDRELVQ 76
                                      46788*************************97 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.4e-06     0.014      15      55 ..      34      76 ..      30      82 .. 0.89
   2 ?   -3.7   0.0         9   1.3e+04      26      35 ..      99     108 ..      98     111 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.4e-06
                                      HHHHH..STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
                            HTH_20 15 ilraL..araegltaselaerldlskntlsyHLrvLeeagLve 55
                                      + r L  + ++++t+se+ae  +++k+++   Lr L++ +Lv 
  gi|300713076|ref|YP_003738888.1| 34 VVRFLyrNNDKAFTPSEIAEGASIKKSSIGTVLRRLQDRELVQ 76
                                      5666777789****************************99995 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9
                                       -HHHHHHHHT CS
                            HTH_20  26 taselaerld 35 
                                       t ++l+er++
  gi|300713076|ref|YP_003738888.1|  99 TITDLDERFG 108
                                       7788888875 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.3e-05      0.05      26      54 ..      50      78 ..      28      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-05
                                      T--GGG---HHHHHHHHHHHHHTTS-EEE CS
                   Penicillinase_R 26 eleeekelaysTVktllrrLvkKgllsre 54
                                      e++e  + ++s++ t+lrrL +++l++++
  gi|300713076|ref|YP_003738888.1| 50 EIAEGASIKKSSIGTVLRRLQDRELVQHK 78
                                      566777889*****************997 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.4e-05      0.08       2      63 ..      33      88 ..      32      93 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.4e-05
                                      HHHHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET.EEEEES-HH CS
                         HTH_Crp_2  2 RlArfLlrlaeraggeielpltqeelAsmlGltretvsrilseLkreglis.rg.rririldle 63
                                      ++ rfL+r  ++        +t  e+A+   +  +++  +l++L+++ l++ +g +   i d +
  gi|300713076|ref|YP_003738888.1| 33 KVVRFLYRN-ND------KAFTPSEIAEGASIKKSSIGTVLRRLQDRELVQhKGdY-WAIGDEQ 88
                                      677777653.22......25799****************************66633.7777766 PP

>> Head-tail_con  Bacteriophage head to tail connecting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0018       2.7     352     385 ..      38      71 ..      18      77 .. 0.84
   2 ?    4.0   0.0    0.0095        14     148     189 ..      81     121 ..      73     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0018
                     Head-tail_con 352 lanqrraevTAtEvleraeEklrlLGpvlerlqs 385
                                       l + ++++ T  E++e a+ k   +G vl rlq+
  gi|300713076|ref|YP_003738888.1|  38 LYRNNDKAFTPSEIAEGASIKKSSIGTVLRRLQD 71 
                                       66677888************************97 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0095
                     Head-tail_con 148 vvaedaaGrvdtvvrrfkmtarqlverFgeaalpeevrrale 189
                                       ++a +++ rv + +r f  t+ +l erFg+++l+e  + a+e
  gi|300713076|ref|YP_003738888.1|  81 YWAIGDEQRVHDAFR-FHRTITDLDERFGAEDLDEWREHAAE 121
                                       788899999999886.8899*************997777766 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.1e-05      0.11      10      56 ..      31      76 ..      23      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.1e-05
                                      HHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                              Rrf2 10 alhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvk 56
                                      a +++ +L +++++  ++ +eiae  +i++s +  +l++L+  +lv+
  gi|300713076|ref|YP_003738888.1| 31 AEKVVRFLYRNNDKA-FTPSEIAEGASIKKSSIGTVLRRLQDRELVQ 76
                                      667777888888877.*****************************98 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.6e-05     0.099      14      60 ..      30      78 ..      23     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.6e-05
                                      HHHHHHHHHHCTT..SEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEE CS
                       TFIIE_alpha 14 eavlvldvLlekg..evteedlakelkidlnelrklLnrLyearlvkyk 60
                                      +a +v+  L ++    +t  ++a+  +i++  ++ +L rL++  lv+ k
  gi|300713076|ref|YP_003738888.1| 30 NAEKVVRFLYRNNdkAFTPSEIAEGASIKKSSIGTVLRRLQDRELVQHK 78
                                      56677777777642268999*************************9876 PP

>> Dimerisation  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022      0.32      15      46 ..      38      69 ..      33      70 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
                      Dimerisation 15 iakaggkplspsEiaskLptknpeapvlldRl 46
                                      ++  ++k+ +psEia+  + k+++  ++l+Rl
  gi|300713076|ref|YP_003738888.1| 38 LYRNNDKAFTPSEIAEGASIKKSSIGTVLRRL 69
                                      778889*************6666666677775 PP

>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.83   1.2e+03      24      32 ..      36      44 ..      35      63 .. 0.76
   2 ?   -1.6   0.0         2     3e+03      20      36 ..      68      82 ..      66      85 .. 0.64
   3 ?    8.9   1.5     0.001       1.5      16      36 ..      85     115 ..      74     119 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.83
                        PNP_phzG_C 24 RfrYereee 32
                                      Rf Y+++++
  gi|300713076|ref|YP_003738888.1| 36 RFLYRNNDK 44
                                      999*87663 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
                        PNP_phzG_C 20 RlHdRfrYereeedgkW 36
                                      Rl dR   + ++  + W
  gi|300713076|ref|YP_003738888.1| 68 RLQDRELVQHKG--DYW 82
                                      888987665444..455 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.001
                        PNP_phzG_C  16 grpsRlHdRfrYereeed..........gkW 36 
                                       g ++R+Hd fr++r+ +d          ++W
  gi|300713076|ref|YP_003738888.1|  85 GDEQRVHDAFRFHRTITDlderfgaedlDEW 115
                                       899*********9965422223334456677 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 879.56
//
Query:       gi|300713077|ref|YP_003738889.1|  [L=83]
Description: hypothetical protein HacjB3_18793 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 572.99
//
Query:       gi|300713078|ref|YP_003738890.1|  [L=333]
Description: cytochrome d ubiquinol oxidase, subunit II [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-74  250.5  31.9    2.7e-74  250.3  31.9    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
  ------ inclusion threshold ------
      0.058   13.1   4.8      0.023   14.4   1.8    1.8  2  DUF1673          Protein of unknown function (DUF1673)


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.3  31.9     3e-78   2.7e-74       1     303 []      17     323 ..      17     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: 250.3 bits;  conditional E-value: 3e-78
                   Cyt_bd_oxida_II   1 lqliwflligvllagYvvldGfDlGvGillpllakkde.errlllnsigpvWdgnevWLvtaggalfaaFPlayatl 76 
                                       l+ iwf l++++l ++++ldGfD+GvGil+ +  ++d+ er++ll++i p+WdgnevWLv++ggalfaaFP++ya l
  gi|300713078|ref|YP_003738890.1|  17 LADIWFGLVFFILGMFLFLDGFDFGVGILFAT--RDDKhEREQLLAAITPFWDGNEVWLVVFGGALFAAFPAVYANL 91 
                                       578**************************999..99999************************************** PP

                   Cyt_bd_oxida_II  77 fsglylpllliLlglilRgvafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdadeygflsdll 153
                                       fs  yl++++iL +lilRg+a e+ +++e++ w+++w  af++gS+ a++llG+ l+n+l G+           +l+
  gi|300713078|ref|YP_003738890.1|  92 FSRHYLLMFAILGALILRGLAPEMYEQREDEPWQRWWGRAFIVGSFAAPFLLGIFLANWLLGAT----------TLM 158
                                       ****************************9989*****************************998..........489 PP

                   Cyt_bd_oxida_II 154 npfallvglllvalflllGalylalktegelqerarrlalvlalvllvllvvvllwtll............lvllll 218
                                       ++  ++vgl++v+l+++ G ++l lkt++el++++++   +++++ l+l+v++l +++l            lv+ l+
  gi|300713078|ref|YP_003738890.1| 159 TLPGIIVGLTVVTLTVVDGVAFLRLKTRNELRDEFKTDGYRALALYLILVVLTLSAVYLtapelrsallslLVVGLV 235
                                       9************************************4444444444444444433333446888887664233333 PP

                   Cyt_bd_oxida_II 219 avlalllav..lllrkkreglaflasaltvllvvlllavslfPyllpss.ltianaasseytlkvmlivalillplv 292
                                       +v ++l ++  +++r++r+++af+a+a++v+++v ++a+ ++P +   + lt+ +a  s+  l++m+i+a++llpl+
  gi|300713078|ref|YP_003738890.1| 236 VVNLVLTGIyaVATRSDRYYVAFIAGAGLVFTLVSIIAGLMYPAIDRVEgLTVGTAIVSPLPLNIMSIGAALLLPLI 312
                                       333333333446666688999***********************766666*************************** PP

                   Cyt_bd_oxida_II 293 laytawlyrvf 303
                                       ++y+ +ly vf
  gi|300713078|ref|YP_003738890.1| 313 FLYFGVLYSVF 323
                                       *********98 PP

>> DUF1673  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.8   2.6e-06     0.023      51     198 ..     123     268 ..     112     283 .. 0.81
   2 ?   -1.5   0.3      0.19   1.7e+03     179     206 ..     286     320 ..     264     324 .. 0.47

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.6e-06
                           DUF1673  51 wvdkrsnrillvslfftllsllvltq...lGinlialliglllsllliiltwkkqmqiyddikralvektvdkisik 124
                                       ++++  +r ++v +f  ++ l ++     lG + ++ l g+++ l+++ lt+   + ++    r+  +   ++   +
  gi|300713078|ref|YP_003738890.1| 123 PWQRWWGRAFIVGSFAAPFLLGIFLAnwlLGATTLMTLPGIIVGLTVVTLTVVDGVAFLRLKTRNELRDEFKTDGYR 199
                                       6788888999999999999998886422257799999***************9999999966677777777777777 PP

                           DUF1673 125 rilfkpvvIiikievtenenpvlrwllrllllviflliavllillsyvesiagelqlgevvssfisgllllllw 198
                                        +   ++ +++ ++ ++   p lr  l +ll+v ++++ ++l+  + v  ++   +     ++fi+g +l++++
  gi|300713078|ref|YP_003738890.1| 200 ALALYLILVVLTLSAVYLTAPELRSALLSLLVVGLVVVNLVLTGIYAVATRSDRYY-----VAFIAGAGLVFTL 268
                                       777777888*****************************999999999999977776.....6777776665443 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.19
                           DUF1673 179 lqlge.......vvssfisgllllllwliylqviy 206
                                       l +g+         ++ i+  lll l+  y+ v+y
  gi|300713078|ref|YP_003738890.1| 286 LTVGTaivsplpLNIMSIGAALLLPLIFLYFGVLY 320
                                       44444333333333344444455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 2252.83
//
Query:       gi|300713079|ref|YP_003738891.1|  [L=474]
Description: cytochrome bd ubiquinol oxidase subunit I [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-144  481.9  22.1   1.5e-144  481.7  22.1    1.0  1  Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  481.7  22.1  8.4e-149  1.5e-144       2     418 .]       8     451 ..       7     451 .. 0.96

  Alignments for each domain:
  == domain 1  score: 481.7 bits;  conditional E-value: 8.4e-149
                    Cyt_bd_oxida_I   2 aRlqfaltavfHflfvpltlGlalllailetlylrtgdekykklakfwgklfainFavGvvtGivlefqfgtnWsey 78 
                                       +R+qfalt+++H++f+ +++Gla +l+++ ++ +r+++  y++l +fw+++fa++Fa G+vtG+vlef+fgtn++++
  gi|300713079|ref|YP_003738891.1|   8 SRIQFALTVIVHIIFPVVSMGLAPFLIYFTWKDIRSDKVIYEQLRRFWTRIFAVSFATGTVTGLVLEFEFGTNFAAF 84 
                                       8**************************************************************************** PP

                    Cyt_bd_oxida_I  79 srfvGdifgapLaiEgllAFflEstflglmlfgwdrvskklhllatwlvaigtllSalwIlaanswmqtPvGaelnp 155
                                       s+++G+ fg pLa+Eg++AF+lE+tflg+++fg++rvs++l++l++++v +gt+lSa+wIl+answmqtP G+e++ 
  gi|300713079|ref|YP_003738891.1|  85 SKTAGELFGGPLALEGMMAFMLEATFLGIFVFGRERVSDRLYFLSSIAVGLGTWLSAVWILIANSWMQTPRGFEVVM 161
                                       ***************************************************************************98 PP

                    Cyt_bd_oxida_I 156 dtg..raeltdflavlfnpsalakflHtvlaalltaaffvagvsawyllr........rekefarkslkialvvalv 222
                                       + g   ++l+d++a+ +np +++ f+H+  aa+   a+++ag+ a+y++r        ++ ef++++lkialvv+++
  gi|300713079|ref|YP_003738891.1| 162 EDGqpIVHLVDPIAAYLNPRFPWMFVHMQNAAVESVALLMAGIGAYYVFRhhiwgypiDNIEFWEATLKIALVVLVI 238
                                       8763457788*********************************************9999999*************** PP

                    Cyt_bd_oxida_I 223 aallqallGdlsgkevaetqpaKlAAmeglwetee.aplslfgipde......eeeknefaieiPgllsllat.gsl 291
                                       +a+lqa+ Gdl +++v+etqp+K+AAme++wet++  p +++++p++       + k+ f + iPg +s+la+ g++
  gi|300713079|ref|YP_003738891.1| 239 TAPLQAIHGDLYARHVVETQPQKFAAMEAIWETDSyVPEYIVAFPTSiqdlldPRAKEIFGLGIPGGASWLASgGDP 315
                                       **********************************9*********88855555335566699***********9789* PP

                    Cyt_bd_oxida_I 292 dgevkGlndlpkeevPpvalvfwsfrimvglgvlllllallalll.........rwllrllllaiplpfiaveaGWi 359
                                       +++++Gln++ +  +Ppva+vfwsfrimv+lg++++lla++++++          +l+++l+l++pl+++ave+GWi
  gi|300713079|ref|YP_003738891.1| 316 QATIQGLNEF-EGPQPPVAIVFWSFRIMVALGFWFILLAFWGVYRwwrselyedDLLHKALMLSAPLGLLAVELGWI 391
                                       **********.6679***************************977779******77********************* PP

                    Cyt_bd_oxida_I 360 vtevGRqPWivygllrtadavsp.vsagevllslilflllylvLlvvevylllklikkgp 418
                                       vtevGRqPW+++g+++t+d+vsp ++ +e +++l++f+++yl Ll++++y+++++i++gp
  gi|300713079|ref|YP_003738891.1| 392 VTEVGRQPWVIQGVMKTSDSVSPgLTGAEATATLVGFAIVYLGLLTLYTYVVVRIIRAGP 451
                                       *********************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3324.32
//
Query:       gi|300713080|ref|YP_003738892.1|  [L=104]
Description: hypothetical protein HacjB3_18808 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-09   36.0   0.4    8.6e-09   35.3   0.4    1.3  1  HTH_20    Helix-turn-helix domain
    6.4e-05   22.7   0.4      9e-05   22.2   0.4    1.3  1  HTH_IclR  IclR helix-turn-helix domain
    0.00031   20.6   0.2    0.00043   20.1   0.2    1.2  1  MarR_2    MarR family
    0.00089   19.1   0.0     0.0013   18.5   0.0    1.3  1  TrmB      Sugar-specific transcriptional regulator TrmB
     0.0019   18.1   0.0     0.0023   17.7   0.0    1.2  1  HTH_5     Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.016   15.3   0.0       0.02   15.1   0.0    1.2  1  FUR       Ferric uptake regulator family
      0.019   15.0   0.0      0.034   14.2   0.0    1.4  1  HTH_7     Helix-turn-helix domain of resolvase
       0.04   13.6   0.0       0.05   13.3   0.0    1.1  1  RP-C      Replication protein C N-terminal domain
      0.053   13.5   0.1      0.078   12.9   0.1    1.3  1  HTH_11    HTH domain
      0.062   13.3   0.0      0.091   12.7   0.0    1.3  1  PadR      Transcriptional regulator PadR-like family
      0.078   13.3   0.0       0.11   12.8   0.0    1.2  1  Rrf2      Transcriptional regulator


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.4   5.3e-12   8.6e-09      11      58 ..       5      50 ..       1      52 [. 0.92

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 5.3e-12
                                      HHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
                            HTH_20 11 vRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                                        r +lr+   a+++ta+el  r+d++++tl++ L+ L++a Lv+ ++
  gi|300713080|ref|YP_003738892.1|  5 DCRTVLRET--AQPMTATELSTRCDIAQSTLYRKLELLSDASLVRERD 50
                                      5799*****..*********************************9986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.4   5.5e-08     9e-05      12      50 ..      10      48 ..       8      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.5e-08
                                      -CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
                          HTH_IclR 12 laeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                                      l+e++q++t +el+ r++++ St +R L  L    +v+ 
  gi|300713080|ref|YP_003738892.1| 10 LRETAQPMTATELSTRCDIAQSTLYRKLELLSDASLVRE 48
                                      899***************************999999986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   2.6e-07   0.00043      21      55 ..      16      50 ..       7      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.6e-07
                                      EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
                            MarR_2 21 dltvgelarrlglsksavsrilkrLvaaGLverrp 55
                                      ++t++el  r+++ +s++ r l+ L++a Lv++r+
  gi|300713080|ref|YP_003738892.1| 16 PMTATELSTRCDIAQSTLYRKLELLSDASLVRERD 50
                                      39******************************994 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.2e-07    0.0013      20      56 ..      14      50 ..       3      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.2e-07
                                      HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
                              TrmB 20 lgpatadeiaeelgvprskvYevLrsLedkGlVerek 56
                                       +p+ta+e++ + ++ +s+ Y+ L+ L+d+ lV+ ++
  gi|300713080|ref|YP_003738892.1| 14 AQPMTATELSTRCDIAQSTLYRKLELLSDASLVRERD 50
                                      679******************************9875 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.4e-06    0.0023      11      46 ..      10      47 ..       8      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.4e-06
                                      HTT..SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
                             HTH_5 11 Lae..gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                                      L+e  ++++++el+   ++ qst+ + L  L +a LV+
  gi|300713080|ref|YP_003738892.1| 10 LREtaQPMTATELSTRCDIAQSTLYRKLELLSDASLVR 47
                                      677789****************************9996 PP

>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   1.2e-05      0.02      35      63 ..      23      51 ..       9      74 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                                      HTTTT--HHHHHHHHHHHHHTTSEEEEEE CS
                               FUR 35 eedpeislaTVYrtLklleeaglvkelef 63
                                      +++ +i  +T+Yr L+ll++a lv+e ++
  gi|300713080|ref|YP_003738892.1| 23 STRCDIAQSTLYRKLELLSDASLVRERDT 51
                                      67789*******************98765 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.1e-05     0.034      18      43 ..      13      38 ..       2      39 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.1e-05
                                      TTTT--STTTSSSS---SSSS--SS- CS
                             HTH_7 18 leeGisiskIAkevnisRsTvYRyla 43
                                       +++++++++  + +i+ sT+YR+l+
  gi|300713080|ref|YP_003738892.1| 13 TAQPMTATELSTRCDIAQSTLYRKLE 38
                                      6799********************95 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.1e-05      0.05      74     110 ..      19      55 ..       9      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
                              RP-C  74 NaqLsralglsestlrrhlaaLveaGliirrDspngk 110
                                       +++Ls + ++++stl r l  L +a l+  rD  n +
  gi|300713080|ref|YP_003738892.1|  19 ATELSTRCDIAQSTLYRKLELLSDASLVRERDTINPQ 55 
                                       67899***************************76643 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.8e-05     0.078       8      42 ..       9      43 ..       5      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.8e-05
                            HTH_11  8 lLleargpisgeeLAeeLnvSrrtvrrdIkaLeel 42
                                       L+e+ +p+++ eL+ + ++  +t +r ++ L+++
  gi|300713080|ref|YP_003738892.1|  9 VLRETAQPMTATELSTRCDIAQSTLYRKLELLSDA 43
                                      68999999************************875 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.6e-05     0.091      27      63 ..      26      62 ..      16      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.6e-05
                                      CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEE CS
                              PadR 27 lelseGslYpaLkrLekeglveseweesgegpprkyY 63
                                       ++ +++lY+ L+ L++  lv ++ + + +g+++  Y
  gi|300713080|ref|YP_003738892.1| 26 CDIAQSTLYRKLELLSDASLVRERDTINPQGGRTTRY 62
                                      67889********************999777776666 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.8e-05      0.11      20      57 ..      11      48 ..       6      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.8e-05
                                      SSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                              Rrf2 20 eeeeepvsseeiaerqnispsylekilakLrkaglvks 57
                                      +e+ +p++++e+++r +i +s l + l+ L+ a lv+ 
  gi|300713080|ref|YP_003738892.1| 11 RETAQPMTATELSTRCDIAQSTLYRKLELLSDASLVRE 48
                                      677889******************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 807.89
//
Query:       gi|300713081|ref|YP_003738893.1|  [L=345]
Description: transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-35  118.6   0.1    4.9e-16   58.5   0.1    2.2  2  TFIIB           Transcription factor TFIIB repeat
    3.4e-12   45.7   3.7    8.1e-12   44.5   3.7    1.7  1  TF_Zn_Ribbon    TFIIB zinc-binding
     0.0027   17.6   0.2     0.0064   16.4   0.2    1.6  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
  ------ inclusion threshold ------
      0.023   14.8   0.0       0.14   12.3   0.0    2.1  2  Cyclin_C        Cyclin, C-terminal domain
       0.55    9.7   2.6        5.2    6.6   2.8    2.1  2  zf-ribbon_3     zinc-ribbon domain


Domain annotation for each model (and alignments):
>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   1.8e-19   6.6e-16       1      68 [.     163     230 ..     163     233 .. 0.97
   2 !   58.5   0.1   1.4e-19   4.9e-16       1      71 []     257     327 ..     257     327 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.8e-19
                                       HHHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--S CS
                             TFIIB   1 ikrfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVse 68 
                                       i r+a+al+Lp+ +++ A  l+++a+e+++l Grs +g+a A+ly A+r+  + rt++e   v++V+ 
  gi|300713081|ref|YP_003738893.1| 163 IRRMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAELETVSRVKR 230
                                       78****************************************************************86 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 1.4e-19
                                       HHHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
                             TFIIB   1 ikrfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71 
                                       +++fa++l+ +++ +++A  l+ +a++++v++Grspag+aA ++y A+r+ +++ tq+ + +v++Vs  ti
  gi|300713081|ref|YP_003738893.1| 257 VPQFASELNVSDEATRRARDLLTTAKAQGVHSGRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMTI 327
                                       689****************************************************************9997 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   3.7   2.3e-15   8.1e-12       2      42 ..      48      87 ..      47      88 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 2.3e-15
                                      EETTTTCEECHEETSTTCEEESSSSBEEEECCCCCCCHHHH CS
                      TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdCGlVlednsidegpewre 42
                                      +CP+C +  ++ D e+ge++C+dCGlVl+ + +d+gp+wr+
  gi|300713081|ref|YP_003738893.1| 48 VCPECDG-LVIQDDEHGETICEDCGLVLDTDVVDHGPDWRA 87
                                      7*****9.47******************************8 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   1.8e-06    0.0064      25      61 ..      43      79 ..      26      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.8e-06
                    OrfB_Zn_ribbon 25 ayTSktCseCgsknkealsgrtfkCpnCgfeadrDvn 61
                                      + + + C+eC   + +++++ +  C++Cg+++d Dv+
  gi|300713081|ref|YP_003738893.1| 43 SQSASVCPECDGLVIQDDEHGETICEDCGLVLDTDVV 79
                                      567889*******9999******************97 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.25   9.1e+02      47      83 ..     201     237 ..     199     250 .. 0.81
   2 ?   12.3   0.0   3.9e-05      0.14      41      90 ..     289     338 ..     251     345 .] 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.25
                                       HHHHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHH CS
                          Cyclin_C  47 iAaaalllarstlnspewtetlehytgyskedlkpcv 83 
                                       +A+a+l+ a ++ ++p    +le +++++  +++  +
  gi|300713081|ref|YP_003738893.1| 201 MATASLYTAARQHSTPRTLAELETVSRVKRLRIQRAY 237
                                       699****999999888888888888887776666555 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.9e-05
                                       CS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHHHHHHHHH CS
                          Cyclin_C  41 syppSliAaaalllarstlnspewtetlehytgyskedlkpcvelilell 90 
                                       + +p  +Aa+a+++a++  n++  +et+  +t++s   ++  ++ +le++
  gi|300713081|ref|YP_003738893.1| 289 GRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMTIRIRYQELLEVY 338
                                       5678889********************************99999999987 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.3    0.0066        24      12      22 ..      42      52 ..      39      57 .. 0.82
   2 ?    6.6   2.8    0.0014       5.2       5      26 .]      49      74 ..      45      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0066
                       zf-ribbon_3 12 lssddnvCpyC 22
                                      ls +++vCp C
  gi|300713081|ref|YP_003738893.1| 42 LSQSASVCPEC 52
                                      68899999999 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0014
                       zf-ribbon_3  5 CPnCGa.plssd...dnvCpyCGtkl 26
                                      CP+C+  ++++d    ++C  CG +l
  gi|300713081|ref|YP_003738893.1| 49 CPECDGlVIQDDehgETICEDCGLVL 74
                                      9***9988999633369******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2406.61
//
Query:       gi|300713082|ref|YP_003738894.1|  [L=49]
Description: hypothetical protein HacjB3_18818 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 380.85
//
Query:       gi|300713083|ref|YP_003738895.1|  [L=412]
Description: sugar transporter [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-49  166.5  66.9    3.4e-39  134.8  42.7    2.0  2  MFS_1       Major Facilitator Superfamily
    3.1e-07   29.6  21.9    0.00042   19.3   9.4    2.4  2  MFS_1_like  MFS_1 like family
    7.8e-06   25.0  30.5     0.0027   16.6  11.4    2.2  2  Sugar_tr    Sugar (and other) transporter
      0.004   16.9   0.6       0.01   15.5   0.6    1.7  1  UNC-93      Ion channel regulatory protein UNC-93
  ------ inclusion threshold ------
          7    4.8   6.9        2.8    6.1   0.1    2.4  2  OATP        Organic Anion Transporter Polypeptide (OATP) fami


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8  42.7   9.4e-43   3.4e-39      11     337 ..      41     357 ..      29     358 .. 0.87
   2 !   45.5  16.2   1.3e-15   4.7e-12      53     176 ..     285     408 ..     284     412 .] 0.88

  Alignments for each domain:
  == domain 1  score: 134.8 bits;  conditional E-value: 9.4e-43
                             MFS_1  11 arsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..ssl 85 
                                       a+ i+ +++++ + ++l+i p+ +g+l+++ + +a++aslp+G++ dr  +r  +l+++l+++++++++++a  ++ 
  gi|300713083|ref|YP_003738895.1|  41 AYEIVPASVTPVIRDSLHIGPTIAGFLVGIMFGTAVIASLPAGAILDRTDSRTAMLFAVLTLFVAGTWGWVAghHGD 117
                                       33344444444******************************************777777777777699996678999 PP

                             MFS_1  86 w.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivs 161
                                       +  ++++r+l G+++ +++ ag+ ++++ ++ e+r+ a+g+++a+  +G++lg + g+l+a+ +gW+a+f+++++++
  gi|300713083|ref|YP_003738895.1| 118 YrSVIASRALGGVAYVVVWNAGIDIVSRAANSENRATAVGIFTASGPIGFALGQGTGPLIAERFGWPAIFLAFTGLT 194
                                       99*************************************************************************** PP

                             MFS_1 162 llafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqev 237
                                       ++++v   ++ p+++       ++         ++ + ++a+l+++ +w i l+++l+  + + ++ ++  +yl   
  gi|300713083|ref|YP_003738895.1| 195 FVGLV---VFWPASRGFGTSR-GEAP-------SIQE-FGAVLRNRSVWsIGLLGFLGY-ALYLFVNSWGSSYLTVE 258
                                       ***66...5554444433333.3333.......5777.**********95555555555.58888************ PP

                             MFS_1 238 lglsglllaglllallalvgailallagrlsdr.lgrrrrlllallllllaalglallavtssavllllvlvliGfg 313
                                       lg+s l ++gll+al+ ++g+++++ +g +sdr +g rr+ ++ ++++++a l l+++ +  s +ll+++l+l Gf+
  gi|300713083|ref|YP_003738895.1| 259 LGFS-LAISGLLVALFPAIGVVSRISSGLISDRvFGGRRQPIVLGSFGVAAPLVLVFTRFR-SLPLLVALLLLTGFA 333
                                       ****.**************************999***************************.777777799999*** PP

                             MFS_1 314 lgfvfpsllalasdlappeeagta 337
                                       + ++ +++++++ +++ p+ a+ta
  gi|300713083|ref|YP_003738895.1| 334 VQLTLGLSFTYVREVVDPRVAATA 357
                                       ****************99999887 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 1.3e-15
                             MFS_1  53 Grlsdr.fGrrr.vlllglllfalglllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigl 125
                                       G +sdr fG rr  ++lg ++ a+  l+l+f+   sl+ll++l +l+G++  + + ++ +++++++ ++  + a+++
  gi|300713083|ref|YP_003738895.1| 285 GLISDRvFGGRRqPIVLGSFGVAAP-LVLVFTrfRSLPLLVALLLLTGFAVQLTLGLSFTYVREVVDPRVAATAVAF 360
                                       899***8876666************.555554448899*************************************** PP

                             MFS_1 126 lsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                                        ++   +Ga l+p++gg++++ +g+  +f++++i++l ++v+  ++  +++
  gi|300713083|ref|YP_003738895.1| 361 QTSIGLAGAFLAPIAGGVIVDVAGFDTAFVLAGILALCGIVV--AWR-APE 408
                                       ***************************************884..443.333 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   6.0   2.6e-06    0.0095     260     370 ..      66     178 ..      57     191 .. 0.76
   2 !   19.3   9.4   1.2e-07   0.00042     183     383 ..     187     389 ..     179     391 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-06
                        MFS_1_like 260 tllGslvalgvvaeiplfffaekllekl.Ghvklliiallayil.rfllyaii.enawlvlpievLhgisfgllwaa 333
                                       +l+G++    v+a++p    a  +l+++ + + +l++ l+++++ ++ ++a    +   v+   +L g+++ ++w a
  gi|300713083|ref|YP_003738895.1|  66 FLVGIMFGTAVIASLP----AGAILDRTdSRTAMLFAVLTLFVAgTWGWVAGHhGDYRSVIASRALGGVAYVVVWNA 138
                                       5666666666666666....566676662455666666666554479888888888999999*************** PP

                        MFS_1_like 334 aveyvskiapksleatgqgllsg...lyfglGralGsliG 370
                                       +++ vs++a  + +at  g++++   + f lG++ G li+
  gi|300713083|ref|YP_003738895.1| 139 GIDIVSRAANSENRATAVGIFTAsgpIGFALGQGTGPLIA 178
                                       *********************9744467888888887775 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.2e-07
                        MFS_1_like 183 lyvlaallvisllvvlilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYL.kelgas 258
                                       ++ +++l  + l+v   +     +++ + + s q++ ++l+n++v+ + l  ++  +++ +++++ + YL  elg+s
  gi|300713083|ref|YP_003738895.1| 187 FLAFTGLTFVGLVV-FWPASRGFGTSRGEAPSIQEFGAVLRNRSVWSIGLLGFLGYALYLFVNSWGSSYLtVELGFS 262
                                       44555554444444.55555566666677777799***********************************99***** PP

                        MFS_1_like 259 ntllGslvalgvvaeiplfffaekllekl..Ghvklliiallayilrfllyaii.enawlvlpievLhgisfgllwa 332
                                         + G lval  +  ++  + +  + +++  G ++ ++++ + +++ ++l+ +  +++ l++ + +L g+++ l+ +
  gi|300713083|ref|YP_003738895.1| 263 LAISGLLVALFPAIGVVSRISSGLISDRVfgGRRQPIVLGSFGVAAPLVLVFTRfRSLPLLVALLLLTGFAVQLTLG 339
                                       9999999987655555555555555555444888888888888888888876655********************** PP

                        MFS_1_like 333 aaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                                          +yv++++ ++++at  ++ +++   +G +l  ++GG++ d  +  ++F
  gi|300713083|ref|YP_003738895.1| 340 LSFTYVREVVDPRVAATAVAFQTSIGL-AGAFLAPIAGGVIVDVAGFDTAF 389
                                       ********************9999854.59999*******99998877777 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  11.4   7.5e-07    0.0027      48     202 ..      64     213 ..      26     232 .. 0.83
   2 !   14.0  11.3   4.6e-06     0.017      44     193 ..     262     408 ..     229     411 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.5e-07
                                       HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHH CS
                          Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlv 123
                                        g++v+i++  a+i sl ag + dr + + ++l+ + +lfv+g+   +a +    +  +i++R l G++  ++ +  
  gi|300713083|ref|YP_003738895.1|  64 AGFLVGIMFGTAVIASLPAGAILDRTDSRTAMLFaVLTLFVAGTWGWVAGH-HGDYRSVIASRALGGVAYVVVWNAG 139
                                       3666777777777779999***************55566777777776666.66*********************** PP

                                       HHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
                          Sugar_tr 124 PmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylve 200
                                          +s  A  + R + v+++  +  +G+ +++++g  +++  +     ++  + ++  l+++ l++f+P S  +  +
  gi|300713083|ref|YP_003738895.1| 140 IDIVSRAANSENRATAVGIFTASGPIGFALGQGTGPLIAERFG-----WPAIFLAFTGLTFVGLVVFWPASRGFGTS 211
                                       ***********************************99977666.....77778888888899999****99877666 PP

                                       TT CS
                          Sugar_tr 201 kg 202
                                       +g
  gi|300713083|ref|YP_003738895.1| 212 RG 213
                                       66 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.6e-06
                                       ...HHHHHHHTHHHHHHHHHHHHHHHHHHT..THHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHH CS
                          Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrf..GRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGl 118
                                       s   sgl+v++f ++++++ + +gl++dr+  GR++ ++ +++ + +  vl ++    +s+ +l++  +l+G++v l
  gi|300713083|ref|YP_003738895.1| 262 SLAISGLLVALFPAIGVVSRISSGLISDRVfgGRRQPIVLGSFGVAAPLVLVFTRF--RSLPLLVALLLLTGFAVQL 336
                                       55679***********************9666888888888877766666666655..69***************** PP

                                       HHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS-- CS
                          Sugar_tr 119 asvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPE 193
                                       + +l+ +y+ E+  ++++ + v ++ +   +G ++a i g ++ ++ +   +   + l+ ++al  +++ + +PE
  gi|300713083|ref|YP_003738895.1| 337 TLGLSFTYVREVVDPRVAATAVAFQTSIGLAGAFLAPIAGGVIVDVAG---FDTAFVLAGILALCGIVVAWRAPE 408
                                       ************************99999*************999999...************999999999998 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.6   2.9e-06      0.01      43     135 ..      68     164 ..      30     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.9e-06
                            UNC-93  43 laiiyavftvanlvapsvvdlltakwalvigall.yaifqlgFlllnk...yylyissallGvgaallwtgqGsyLs 115
                                       + i++ + ++a+l a  ++d + +++a++++ l+ +++ + g++   +    ++ +s al Gv++ ++w++    +s
  gi|300713083|ref|YP_003738895.1|  68 VGIMFGTAVIASLPAGAILDRTDSRTAMLFAVLTlFVAGTWGWVAGHHgdyRSVIASRALGGVAYVVVWNAGIDIVS 144
                                       57999999***********************986266678899976542214677889******************* PP

                            UNC-93 116 enstretiernssilwallk 135
                                         +++e++ + ++i++a + 
  gi|300713083|ref|YP_003738895.1| 145 RAANSENRATAVGIFTASGP 164
                                       **************999665 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1   0.00079       2.8     134     191 ..     120     177 ..     103     184 .. 0.90
   2 ?    1.6   0.9     0.018        64     139     522 ..     327     381 ..     314     385 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00079
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP 134 lfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGsll 191
                                        ++++  l G++ +++++ Gi  +   ++++n ++ +gi++a   +G alG   G l+
  gi|300713083|ref|YP_003738895.1| 120 SVIASRALGGVAYVVVWNAGIDIVSRAANSENRATAVGIFTASGPIGFALGQGTGPLI 177
                                       5789999********************************************8888765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.018
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP 139 qlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdidseisltpkdprWvgaW 215
                                        ll G++  +   l  +Y+ + v+++ +++ +++ +++ + G  l+ + G++                         
  gi|300713083|ref|YP_003738895.1| 327 LLLTGFAVQLTLGLSFTYVREVVDPRVAATAVAFQTSIGLAGAFLAPIAGGV------------------------- 378
                                       3444555555555555555555555555555555555555555555555554......................... PP

                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP 216 WlgflilgvllllaaiplffFPkelpkkkeerakkkseeesaekkeekkkkeksksseeeelkslkdfpkalkrllk 292
                                                                                                                    
  gi|300713083|ref|YP_003738895.1|   - -----------------------------------------------------------------------------   -
                                       ............................................................................. PP

                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP 293 npifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklv 369
                                                                                                                    
  gi|300713083|ref|YP_003738895.1|   - -----------------------------------------------------------------------------   -
                                       ............................................................................. PP

                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP 370 lvvsllsllllllllflgCetskvagvtvsyeelnqvenltssCnsdCsssseakkksttettncscaaekegeses 446
                                                                                                                    
  gi|300713083|ref|YP_003738895.1|   - -----------------------------------------------------------------------------   -
                                       ............................................................................. PP

                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP 447 avaGkCdsdCkkklllflillflvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPgPiifGaiiD 522
                                                                                                                i+D
  gi|300713083|ref|YP_003738895.1| 379 -------------------------------------------------------------------------IVD 381
                                       .........................................................................444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 3273.23
//
Query:       gi|300713084|ref|YP_003738896.1|  [L=958]
Description: bacterio-opsin activator-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-38  132.3   5.1    1.3e-38  132.3   5.1    3.0  3  BAT           GAF and HTH_10 associated domain
    1.8e-25   89.9   3.2    1.2e-15   58.1   0.1    2.8  2  GAF_2         GAF domain
    5.9e-18   64.4   0.0    1.7e-17   62.9   0.0    1.9  1  HTH_10        HTH DNA binding domain
    1.3e-17   64.1   2.6    6.3e-13   48.9   0.1    3.5  3  PAS_4         PAS fold
    1.6e-12   47.6   0.6      3e-08   33.9   0.0    3.0  2  PAS_9         PAS domain
    1.8e-11   44.5   1.2    1.8e-06   28.3   0.0    2.9  3  GAF_3         GAF domain
    2.3e-11   43.8   0.7    6.2e-11   42.5   0.0    2.2  1  Response_reg  Response regulator receiver domain
    4.1e-08   33.9   0.4     0.0035   18.0   0.0    3.5  3  GAF           GAF domain
      6e-07   29.5   2.4       0.01   15.8   0.0    3.8  4  PAS           PAS fold
      7e-05   22.3   2.2     0.0014   18.1   0.0    3.7  4  Sigma70_r4    Sigma-70, region 4
    0.00013   21.9   0.0     0.0012   18.8   0.0    2.5  2  PAS_8         PAS domain
     0.0084   16.4   0.5      0.091   13.0   0.2    2.9  2  OKR_DC_1_N    Orn/Lys/Arg decarboxylase, N-terminal domain
  ------ inclusion threshold ------
      0.014   15.6   4.9       0.74   10.0   0.1    3.7  4  PAS_7         PAS fold
      0.032   14.3   0.0       0.11   12.6   0.0    2.0  1  HTH_22        HTH domain


Domain annotation for each model (and alignments):
>> BAT  GAF and HTH_10 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.8       2.6   3.3e+03      44     102 ..     108     168 ..      78     180 .. 0.60
   2 ?   -3.3   0.2       5.7   7.3e+03      13      40 ..     521     548 ..     513     571 .. 0.64
   3 !  132.3   5.1     1e-41   1.3e-38       3     149 ..     733     879 ..     732     882 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.6
                               BAT  44 fftvdgadpeevrdaae.dldavedvrv.vseeddgtlleltvsgpslastlaehGgtvrs 102
                                       ++ +++ + + v+d+++ +  av +++   +++d +  + + + ++  a+++ + +g + +
  gi|300713084|ref|YP_003738896.1| 108 YVALTESTDQLVADLLDrTERAVRSAQRsATQRDRARQFDAIFNDSQTATWVLDPDGALTR 168
                                       4444444434444444422223443333033344446677777777777776666666655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.7
                               BAT  13 eddvlvalaaeldcrveleglvprsdge 40 
                                        +d+l+a a+++  r++ e+  + +d +
  gi|300713084|ref|YP_003738896.1| 521 LADLLAATAEAALDRITRESRLREQDRT 548
                                       4455555555555555555554444443 PP

  == domain 3  score: 132.3 bits;  conditional E-value: 1e-41
                               BAT   3 vveLeleirdeddvlvalaaeldcrveleglvprsdgevlvfftvdgadpeevrdaaedldavedvrvvseeddgtl 79 
                                       ++++e++i+d++++l++la+++ c+++++g v++s +++ vf+tv++a+ e+v++aa++l+a +dv+ +s++++g +
  gi|300713084|ref|YP_003738896.1| 733 ITRVEFSIDDSAFILSRLAKDAACTLSYQGGVQQSTEGSYVFVTVEDASLEDVAEAASQLVALDDVQQISADGEGGV 809
                                       789************************************************************************** PP

                               BAT  80 leltvsgpslastlaehGgtvrsaeaedgrarlvvevPpgadvRsvvealeerypdveLvarrererpvr 149
                                       l+l++++p+la  la+hG++ r+a+a++++++lv+++P++ d R++++ ++e++++veL+++++  ++ +
  gi|300713084|ref|YP_003738896.1| 810 LRLRLAQPFLALELADHGAVFREATANPTSTTLVIDIPDRIDSRTITQLVRESFSAVELRSKQTLNQSIE 879
                                       ***************************************************************9988865 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.4   1.3e-10   1.7e-07       3     138 .]     402     534 ..     400     534 .. 0.83
   2 !   58.1   0.1   9.1e-19   1.2e-15       3     137 ..     578     719 ..     576     720 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.3e-10
                                       HHHHHHHHHHHHHHH.SS..EEEEEEE-.TTS-EEEEEEEES-TTSTT-S-B.---TT.HHHHHHHHTS-EEES-GG CS
                             GAF_2   3 dleelldlvldelve.lgaalgyillvd.ddgglrlaawgeaeeefgaaldr.plgeg.lvgealrtgrpvilndle 75 
                                       + +e++++v+d     l+ +++ ++l d d+++lr aa + + +e+++ l+  + +e  l  +++ + ++++++d+ 
  gi|300713084|ref|YP_003738896.1| 402 THQEIAQHVVDDTPGvLNLDASAVYLFDaDANELRPAAHSARLKELNGPLPTvRANEEtLPSYSFVEDESLFFDDVH 478
                                       5689999999999774686666555555266779*9999999999988887766666669***************66 PP

                                       G-S-HHHHHHHHHTT--EEEEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHHHH CS
                             GAF_2  76 edpdkkglpaghaglrsflavPlisegrvvGvlnlyankppafdeedlelLeelaeqiaiaie 138
                                       +    ++l  ++ +lrs +++Pl   g  +Gv+  ++n+ + fd+  +el+++la+++  a++
  gi|300713084|ref|YP_003738896.1| 479 S---ASRLKNRATDLRSAIYIPL---G-NHGVFIAGSNEVGVFDDVTRELADLLAATAEAALD 534
                                       6...44555689***********...9.9******************************9996 PP

  == domain 2  score: 58.1 bits;  conditional E-value: 9.1e-19
                                       HHHHHHHHHHHHHHHSS...EEEEEEE-TTS-.EEEEEEEES-TTSTT-S-B--...-TTHHHHHHHHTS-EEES-G CS
                             GAF_2   3 dleelldlvldelvelg.aalgyillvdddgg.lrlaawgeaeeefgaaldrpl...geglvgealrtgrpvilndl 74 
                                       + ee+  +v++ l+  + +++++i+ +d+  + ++ +aw++++ +  ++++ ++   g  ++g+ ++tg +++++++
  gi|300713084|ref|YP_003738896.1| 578 TREEIDHTVCKLLTANDwFRFAWIGTIDPMSDtVDPRAWAGTDQGYLDSQSFSVaasGTDPAGQTAATGDATMISNV 654
                                       678888899999988799**********666634455999999999888877667656679***************8 PP

                                       GG...-S-HHHHHHHHHTT--EEEEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
                             GAF_2  75 ee...dpdkkglpaghaglrsflavPlisegrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                                       ++   d+ ++   a ++++ s l++Pl++++ ++Gvl++ya  ++afd++  ++L el+e+ia a+
  gi|300713084|ref|YP_003738896.1| 655 AAglrDEVWRKD-ALARDYLSVLSIPLVYNELTHGVLTVYAPTQDAFDDTAKAVLAELGETIASAL 719
                                       885744444444.6***************889*********************************8 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   1.4e-20   1.7e-17       1      52 [.     890     941 ..     890     942 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 1.4e-20
                            HTH_10   1 LTdkqlevlklAyemGYFdyPRrvtlkeLAkelGIskstlsehLrkaeskli 52 
                                       LT++qlev+++Ay +G+F+ PR+ t +e+A++lGIs++++++h r +++kl+
  gi|300713084|ref|YP_003738896.1| 890 LTERQLEVIQTAYYSGFFESPRERTGEEVAETLGISPPAFYKHARTVQRKLF 941
                                       9*************************************************98 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1     5e-16   6.3e-13       1     109 [.     150     262 ..     150     263 .. 0.94
   2 !   13.4   0.0   5.3e-05     0.068       1     110 []     279     382 ..     279     382 .. 0.79
   3 ?   -2.4   0.1       4.5   5.8e+03      15      59 ..     512     549 ..     502     579 .. 0.65

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 5e-16
                             PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktla..ellpee..daarleralrrvlegeepiefleell 73 
                                       ++ ++ a+ vldpdg  +++N++a+e++  + e+++Gk+++   ++++     a+++++++ +l+g         + 
  gi|300713084|ref|YP_003738896.1| 150 FNDSQTATWVLDPDGALTRVNQTAREMIDEDVEAIVGKPFWtlPWWSQTdaTEAEVHQIVENALDGTFGNVVISQPS 226
                                       577889999********************************8889999988899************98888888888 PP

                             PAS_4  74 lpgeerhyelrllPlrdesGevigvlvisrDiTerr 109
                                       + + +++++l+++P+++e+G+ + ++v ++DiTer+
  gi|300713084|ref|YP_003738896.1| 227 HIDNPCVIDLSVRPVKNERGDLVSIVVEGVDITERV 262
                                       899*******************************97 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5.3e-05
                             PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktla.ellpeedaarleralrrvlegeepiefleelll.. 74 
                                       l+++ d +++ ++ g ++y+ ++ + +fg++++e++ + +  ell e+    l + ++ + eg  +++  e++ +  
  gi|300713084|ref|YP_003738896.1| 279 LNNMTDTVLITNETGEYTYVCPNVHFIFGYTAAEIREQGPIhELLGED----LFDRDELAEEG--VLKNIETTATdk 349
                                       6889999*****************************997664886664....44444433333..444444444446 PP

                             PAS_4  75 pgeerhyelrllPlrdesGevigvlvisrDiTerrr 110
                                        g+e++++++++ +   +G+   +l+ +rDiT r++
  gi|300713084|ref|YP_003738896.1| 350 AGREHTLLVNVREVSIQDGT---ILFSCRDITKRKQ 382
                                       9**********999999999...**********985 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.5
                             PAS_4  15 grvlyaNaaaaelfgappeellGktlaellpeedaarleralrrv 59 
                                       g++ ++ ++ a+l++a++e++l++  +e        rl++++r +
  gi|300713084|ref|YP_003738896.1| 512 GVFDDVTRELADLLAATAEAALDRITRE-------SRLREQDRTL 549
                                       5666666777777888888888877776.......2333333333 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.3e-11     3e-08       3     104 .]     156     260 ..     154     260 .. 0.81
   2 !   11.0   0.1   0.00031      0.39       2     104 .]     284     379 ..     283     379 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.3e-11
                             PAS_9   3 gilidnpdgrilyaNeaalrllGyspeevlgksitdlf......vtdpeanerlraaleqgrkkerevevvlirkng 73 
                                       ++++ +pdg ++++N++a++++  + e+++gk++++l       +t++e ++ +++al+       +v +      +
  gi|300713084|ref|YP_003738896.1| 156 ATWVLDPDGALTRVNQTAREMIDEDVEAIVGKPFWTLPwwsqtdATEAEVHQIVENALDGTF---GNVVISQPSHID 229
                                       567888***999**************************986666666666666666666665...444444444445 PP

                             PAS_9  74 etfwvlltaspvkdddgelvgiivilrDite 104
                                       ++  ++l+++pvk++ g lv+i+v  +Dite
  gi|300713084|ref|YP_003738896.1| 230 NPCVIDLSVRPVKNERGDLVSIVVEGVDITE 260
                                       79999*************************8 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00031
                             PAS_9   2 dgilidnpdgrilyaNeaalrllGyspeev.lgksitdlfvtdpeanerlraaleqgrkkerevevvlirkngetfw 77 
                                       d +li+n+ g+ +y+ + +  ++Gy+++e+  + +i++l+    e+  + +++ e+g    ++ e++ ++k g++  
  gi|300713084|ref|YP_003738896.1| 284 DTVLITNETGEYTYVCPNVHFIFGYTAAEIrEQGPIHELL---GEDLFDRDELAEEGV--LKNIETTATDKAGREHT 355
                                       568899********************999735567*****...555555555556666..69***********9999 PP

                             PAS_9  78 vlltaspvkdddgelvgiivilrDite 104
                                        l++++ v  +dg++    + +rDit+
  gi|300713084|ref|YP_003738896.1| 356 LLVNVREVSIQDGTIL---FSCRDITK 379
                                       99****9987877766...69****95 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.9   6.2e+03       3      58 ..     116     168 ..     114     182 .. 0.53
   2 !   28.3   0.0   1.4e-09   1.8e-06       3     127 ..     404     533 ..     402     535 .. 0.84
   3 !   14.1   0.0   3.4e-05     0.044      78     128 ..     669     720 ..     596     721 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.9
                             GAF_3   3 dellekllkllvkllgaevgalllldedgnklqvaagwdgkpalsesldedsalar 58 
                                       d+l+++ll+++ +++++   +  ++d + +++ ++ +   ++   ++ld d al+r
  gi|300713084|ref|YP_003738896.1| 116 DQLVADLLDRTERAVRSAQRSATQRD-RARQFDAIFND--SQTATWVLDPDGALTR 168
                                       67777777777777765444444555.33455555544..2222335555555554 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 1.4e-09
                             GAF_3   3 dellekllkllvkllgaevgalllldedgnklqvaagwdgkpalse......sld.edsalarralssgevvsepsf 72 
                                       +e+++++++ +  +l+++++a++l+d+d n+l++aa++   ++l+e      +++ +++ l ++ + ++e +++ ++
  gi|300713084|ref|YP_003738896.1| 404 QEIAQHVVDDTPGVLNLDASAVYLFDADANELRPAAHS---ARLKElngplpTVRaNEETLPSYSFVEDESLFFDDV 477
                                       89***********************************9...5665566666677778888899*********99998 PP

                             GAF_3  73 aeedg.....lpdraalavPLvagrqviGvlalastkprafdaedlelleslArqiatai 127
                                       + +++     +++r+a+++PL       Gv  ++s++ + fd++++el + lA+ +  a+
  gi|300713084|ref|YP_003738896.1| 478 HSASRlknraTDLRSAIYIPLGN----HGVFIAGSNEVGVFDDVTRELADLLAATAEAAL 533
                                       87766333335668889999988....9********9999*************9776555 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 3.4e-05
                             GAF_3  78 lpdr.aalavPLvagrqviGvlalastkprafdaedlelleslArqiataie 128
                                        +d+ ++l +PLv  + + Gvl ++ +   afd++ ++ l +l+  ia+a++
  gi|300713084|ref|YP_003738896.1| 669 ARDYlSVLSIPLVYNELTHGVLTVYAPTQDAFDDTAKAVLAELGETIASALS 720
                                       344303477*****99************99********************96 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   4.8e-14   6.2e-11      16     109 ..      27     120 ..      13     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 4.8e-14
                                       HHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHH CS
                      Response_reg  16 qlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealk 91 
                                       ++++ + +  +v+ +++ +eale +++e++d+++     ++ +Gl+ll+eir+e   lpvi+ ta ++e++a ea+ 
  gi|300713084|ref|YP_003738896.1|  27 TVVNtQTDA-TVQRVQTKAEALEVFQRETIDCLISEYAPEETTGLDLLREIRTETTALPVIVGTASGSEAVASEAIG 102
                                       444436666.99***************************************************************** PP

                                       CTESEEEESSG-HHHHHH CS
                      Response_reg  92 agaddflsKpfdpeeLlk 109
                                       ag+ d+++   + ++L++
  gi|300713084|ref|YP_003738896.1| 103 AGVTDYVALTESTDQLVA 120
                                       *******98877777765 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.2   1.5e+03      27     103 ..     160     250 ..     121     253 .. 0.77
   2 !   11.6   0.0   0.00025      0.32       3     132 ..     404     532 ..     402     553 .. 0.73
   3 !   18.0   0.0   2.7e-06    0.0035      42     133 .]     629     719 ..     580     719 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
                                       EEETTE.EECEEEEECCEEEETTSHHHH...........HHHHHSSSEEESTGGTSTTHHTT..HHHHHHHHTTESE CS
                               GAF  27 pdydGl.hydipqasrwlfmkngrgicg...........qvlatgqplvipdstpdprfaqy..nrrdllenmgirs 89 
                                        d dG  +  + q +r   +++++ i+g           + +++ ++ +i + + d+ f +    ++++++n+ ++ 
  gi|300713084|ref|YP_003738896.1| 160 LDPDGAlTR-VNQTAREMIDEDVEAIVGkpfwtlpwwsqTDATEAEVHQIVENALDGTFGNVviSQPSHIDNPCVID 235
                                       356664244.7788888888888888889999999999988888888888877799999998998899999999999 PP

                                       EEEEEEEE.TTEEEE CS
                               GAF  90 slvvPlvn.dgelwG 103
                                       + v P++n +g+l+ 
  gi|300713084|ref|YP_003738896.1| 236 LSVRPVKNeRGDLVS 250
                                       999999997887765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00025
                                       HHHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECC...........EEEETTSHHHH......HHHHHSSSE CS
                               GAF   3 eelldtvveelrellgadrvalylpdydGlhydipqasrw...........lfmkngrgicg......qvlatgqpl 62 
                                       +e+++ vv++   +l++d  a+yl d+d  ++ + +a++            + +       +      + + ++++l
  gi|300713084|ref|YP_003738896.1| 404 QEIAQHVVDDTPGVLNLDASAVYLFDADA-NE-LRPAAHSarlkelngplpTVRA------NeetlpsYSFVEDESL 472
                                       799*********************66666.33.4444444343655533322222......2444455899999999 PP

                                       EESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHHH CS
                               GAF  63 vipdstpdprfaqynrrdllenmgirsslvvPlvndgelwGllvlhnpsp.pftreelellqvladqvava 132
                                        ++d+   +r  +       +++  rs++ +Pl n+    G++ + +     f++  +el+  la+ ++ a
  gi|300713084|ref|YP_003738896.1| 473 FFDDVHSASRLKN-------RATDLRSAIYIPLGNH----GVFIAGSNEVgVFDDVTRELADLLAATAEAA 532
                                       9998777777666.......799***********96....6666666333567777777777777766665 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 2.7e-06
                                       CEEEETTSHHHHHHHHHSSSEEESTGG...TSTTHHTTHHHHHHHHTTESEEEEEEEEETTEEEEEEEEEESSS.CS CS
                               GAF  42 wlfmkngrgicgqvlatgqplvipdst...pdprfaqynrrdllenmgirsslvvPlvndgelwGllvlhnpsp.pf 114
                                       ++    g+  +gq++atg++  i++++   +d+ + +      + +  + s+l++Plv ++ + G+l+++ p++  f
  gi|300713084|ref|YP_003738896.1| 629 FSVAASGTDPAGQTAATGDATMISNVAaglRDEVWRK-----DALARDYLSVLSIPLVYNELTHGVLTVYAPTQdAF 700
                                       3444445556889***********8543455555555.....77788999*********************77779* PP

                                       HHHHHHHHHHHHHHHHHHH CS
                               GAF 115 treelellqvladqvaval 133
                                       ++ + ++l +l++ +a al
  gi|300713084|ref|YP_003738896.1| 701 DDTAKAVLAELGETIASAL 719
                                       ***************9987 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.3   5.5e+03      33      54 ..      59      80 ..      57      86 .. 0.84
   2 !   15.8   0.0     8e-06      0.01       2      48 ..     145     191 ..     144     218 .. 0.82
   3 !   10.5   0.0   0.00036      0.46       5     108 ..     277     372 ..     273     377 .. 0.66
   4 ?   -0.4   0.1      0.89   1.1e+03      13      67 ..     504     558 ..     500     594 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.3
                                      HHSSTHHHCTTSBGGGGBSTTH CS
                               PAS 33 llGlsreevlgkslldliheed 54
                                      +  +++ee  g  ll++i +e+
  gi|300713084|ref|YP_003738896.1| 59 ISEYAPEETTGLDLLREIRTET 80
                                      678999**********999886 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 8e-06
                                       HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGG CS
                               PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslld 48 
                                       +++ai++++ ++++v+D dg  + vN++a+e+   + e ++gk++  
  gi|300713084|ref|YP_003738896.1| 145 QFDAIFNDSQTATWVLDPDGALTRVNQTAREMIDEDVEAIVGKPFWT 191
                                       789***************************************99755 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00036
                                       HHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC CS
                               PAS   5 aileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl 81 
                                         l++++d +++++e g+ +yv ++   ++G+++ e+  +  ++++  ed   ++++l +    ++ +++   +   
  gi|300713084|ref|YP_003738896.1| 277 VTLNNMTDTVLITNETGEYTYVCPNVHFIFGYTAAEIREQGPIHELLGEDLF-DRDELAEEGVLKNIETT--ATD-- 348
                                       6799**********************************99999999987632.22222222222222222..111.. PP

                                       TTSSEEEEEEEEEEEEETTEEEEEEEE CS
                               PAS  82 rdgrpihlevraspvrdaggeilgflg 108
                                       + gr+  l+v+++ v   +g    +l+
  gi|300713084|ref|YP_003738896.1| 349 KAGREHTLLVNVREVSIQDG---TILF 372
                                       34666666666666666665...4555 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.89
                                       EEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHH CS
                               PAS  13 pifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlle 67 
                                       +i + +e g++  v ++ ++ll  ++e +l +   +++  e+d++l+++ eql +
  gi|300713084|ref|YP_003738896.1| 504 FIAGSNEVGVFDDVTRELADLLAATAEAALDRITRESRLREQDRTLRAQNEQLTA 558
                                       5666667777777888899999999999999999999988888854444444433 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.27   3.4e+02      26      46 ..     119     139 ..     108     140 .. 0.85
   2 ?   -0.9   0.0      0.91   1.2e+03      19      29 ..     399     409 ..     386     410 .. 0.70
   3 ?   -3.3   0.0       5.2   6.6e+03      18      28 ..     777     787 ..     772     788 .. 0.80
   4 !   18.1   0.0   1.1e-06    0.0014       2      33 ..     887     925 ..     886     927 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.27
                                       HHHHHTS-HHHHHHHHHHHHH CS
                        Sigma70_r4  26 IgerlgiSrerVrqiekrAlr 46 
                                       +++ l+ ++ +Vr+ ++ A +
  gi|300713084|ref|YP_003738896.1| 119 VADLLDRTERAVRSAQRSATQ 139
                                       899*************99976 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.91
                                       TT--HHHHHHH CS
                        Sigma70_r4  19 eglTleEIger 29 
                                          T++EI+++
  gi|300713084|ref|YP_003738896.1| 399 YTETHQEIAQH 409
                                       34499999986 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.2
                                       TTT--HHHHHH CS
                        Sigma70_r4  18 geglTleEIge 28 
                                       +e+ +le+++e
  gi|300713084|ref|YP_003738896.1| 777 VEDASLEDVAE 787
                                       7999*****98 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 1.1e-06
                                       HHHS-HHHHHHHHHHH.......TTT--HHHHHHHHTS- CS
                        Sigma70_r4   2 LasLpererevlelrf.......geglTleEIgerlgiS 33 
                                       L++L+er+ ev++  +        +++T eE++e+lgiS
  gi|300713084|ref|YP_003738896.1| 887 LKKLTERQLEVIQTAYysgffesPRERTGEEVAETLGIS 925
                                       89******************99999*************9 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   9.6e-07    0.0012       2      50 ..     145     190 ..     143     207 .. 0.77
   2 ?   -0.8   0.0       1.3   1.6e+03       4      42 ..     276     315 ..     273     342 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 9.6e-07
                             PAS_8   2 rlralfesspdgiavvd.lgdrivdvNqaalellGysadlkgellgqllp 50 
                                       ++ a+f+ s+ + +v+d +g  ++ vNq+a e+    +++ ++ +g+ + 
  gi|300713084|ref|YP_003738896.1| 145 QFDAIFNDSQTATWVLDpDG-ALTRVNQTAREMI---DEDVEAIVGKPFW 190
                                       5789*************555.5***********9...5566666664443 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
                             PAS_8   4 ralfesspdgiavvd.lgdrivdvNqaalellGys.adlkg 42 
                                       r  ++++ d +++++ +g+  ++v +    ++Gy+ a++++
  gi|300713084|ref|YP_003738896.1| 276 RVTLNNMTDTVLITNeTGE-YTYVCPNVHFIFGYTaAEIRE 315
                                       5557778888887775555.777655555577777766666 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   7.1e-05     0.091      15     105 ..      32     124 ..      25     129 .. 0.86
   2 ?   -1.2   0.0       1.9   2.4e+03      67      91 ..     397     419 ..     368     472 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.1e-05
                        OKR_DC_1_N  15 kegfevvgvtstdDllsvieqnsriaavvlsvd...deaaelldeirernedlPvFllaetrtsedvpadvlreidg 88 
                                       +++ +v +v++  ++l+v +    i++++ +++       +ll+eir   + lPv + + + ++  ++  + + ++ 
  gi|300713084|ref|YP_003738896.1|  32 QTDATVQRVQTKAEALEVFQR-ETIDCLISEYApeeTTGLDLLREIRTETTALPVIVGTASGSEAVASEAIGAGVTD 107
                                       578889999999999999998.78*********9999999***************998886666666666667889* PP

                        OKR_DC_1_N  89 fielledtpefiarqie 105
                                       ++ l e t + +a  + 
  gi|300713084|ref|YP_003738896.1| 108 YVALTESTDQLVADLLD 124
                                       ********999998765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.9
                        OKR_DC_1_N  67 Fllaetrtsedvpadvlreidgfie 91 
                                       Fl++e  t++++  +v++   g+++
  gi|300713084|ref|YP_003738896.1| 397 FLYTE--THQEIAQHVVDDTPGVLN 419
                                       56666..555555555555555444 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.7   6.1e+03      61      93 ..      20      52 ..      17      56 .. 0.77
   2 ?    5.9   0.0     0.011        14       9      70 ..     158     216 ..     150     266 .. 0.65
   3 ?   10.0   0.1   0.00057      0.74       2     115 .]     280     385 ..     279     385 .. 0.61
   4 ?   -2.4   0.1       4.1   5.2e+03      64      77 ..     543     556 ..     512     576 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.7
                             PAS_7 61 aeverrlaaaragkphsfererpdgrvievrgn 93
                                      ++v+++ + +++++  +++r +++ + +ev ++
  gi|300713084|ref|YP_003738896.1| 20 EWVTQFATVVNTQTDATVQRVQTKAEALEVFQR 52
                                      677777788888888888998888888888766 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.011
                             PAS_7   9 svfDadlrLvawNrrylelldlpeelvqvgvpleellrynaergefgagdveaeverrlaaa 70 
                                        v+D d+ L+ +N+  +e+ d   e + vg+p+ +l  +   + + ++++v++ ve+ l+  
  gi|300713084|ref|YP_003738896.1| 158 WVLDPDGALTRVNQTAREMIDEDVEAI-VGKPFWTLPWWS--QTDATEAEVHQIVENALDGT 216
                                       69*********************9999.9***99876554..33333367777777776544 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00057
                             PAS_7   2 enmsqGisvfDadlrLvawNrrylelldlpeelvqvgvpleellryn.aergefgagdveaeverrlaaaragkphs 77 
                                       +nm++ +++ +++++ + +  ++  ++++++  ++ + p++ell     +r e++++ v + +e++         ++
  gi|300713084|ref|YP_003738896.1| 280 NNMTDTVLITNETGEYTYVCPNVHFIFGYTAAEIREQGPIHELLGEDlFDRDELAEEGVLKNIETTA-------TDK 349
                                       6666666666666666666666666666666666666666666643324555555333333333222.......222 PP

                             PAS_7  78 fererpdgrvievrgnplpdgGfVttytDiTerrraee 115
                                           r+    ++vr+  ++dg ++ ++ DiT+r++ ee
  gi|300713084|ref|YP_003738896.1| 350 --AGREHTLLVNVREVSIQDGTILFSCRDITKRKQREE 385
                                       ..2234556789**********************9986 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 4.1
                             PAS_7  64 errlaaaragkphs 77 
                                       ++  + +ra++++ 
  gi|300713084|ref|YP_003738896.1| 543 REQDRTLRAQNEQL 556
                                       33333333333333 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.7e-05      0.11      23      61 ..     892     932 ..     872     934 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.7e-05
                            HTH_22  23 eekieivraLdekGiFllk..gavekvAekLgiSraTvYry 61 
                                       e+ +e+++  +  G+F+    ++ e+vAe LgiS +  Y++
  gi|300713084|ref|YP_003738896.1| 892 ERQLEVIQTAYYSGFFESPreRTGEEVAETLGISPPAFYKH 932
                                       678999**********9852279****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (958 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6331.85
//
Query:       gi|300713085|ref|YP_003738897.1|  [L=47]
Description: hypothetical protein HacjB3_18833 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00015   21.7   0.7    0.00018   21.5   0.7    1.1  1  DZR             Double zinc ribbon
    0.00019   21.4   0.3    0.00022   21.2   0.3    1.1  1  zf-C2HC5        Putative zinc finger motif, C2HC5-type
     0.0045   17.0   0.8     0.0055   16.8   0.8    1.2  1  DUF1272         Protein of unknown function (DUF1272)
  ------ inclusion threshold ------
      0.019   14.9   0.2      0.022   14.7   0.2    1.1  1  zinc-ribbons_6  zinc-ribbons
      0.024   13.9   1.3       0.15   11.4   0.2    2.0  2  zf-RanBP        Zn-finger in Ran binding protein and others
      0.055   13.2   2.3       0.15   11.8   0.1    2.0  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
      0.067   13.3   3.4       0.18   12.0   3.3    1.7  1  Zn-ribbon_8     Zinc ribbon domain
      0.073   12.4   2.6        4.3    6.7   0.3    2.1  2  zf-TFIIB        Transcription factor zinc-finger
        0.1   12.5   0.8       0.11   12.4   0.8    1.1  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
        1.1    9.0   6.6        7.2    6.4   6.6    1.9  1  Rubredoxin_2    Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.7     1e-07   0.00018       7      40 ..       8      41 ..       6      44 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1e-07
                               DZR  7 elppdarfCseCgtklkavaaedrCpsCgekvdp 40
                                       +++ a  C++Cg+ + a++++ rCp C+ ++ +
  gi|300713085|ref|YP_003738897.1|  8 SNEETAYECFRCGSIIIATTSPGRCPDCNGPLRN 41
                                      68889999********************988776 PP

>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.3   1.2e-07   0.00022      16      46 ..      12      41 ..       9      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.2e-07
                          zf-C2HC5 16 aapnClnCGkiiCakeglskpCsfCgsplls 46
                                      +a  C+ CG ii a   + ++C+ C+ pl +
  gi|300713085|ref|YP_003738897.1| 12 TAYECFRCGSIIIATTSP-GRCPDCNGPLRN 41
                                      6789**************.*******99865 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.8   3.1e-06    0.0055      24      54 ..      11      42 ..       2      45 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.1e-06
                           DUF1272 24 icsyEctFCaeCaeevl.envCPncgGelvkR 54
                                        +yEc  C +   ++   ++CP+c+G l +R
  gi|300713085|ref|YP_003738897.1| 11 ETAYECFRCGSIIIATTsPGRCPDCNGPLRNR 42
                                      4689**99998754443289*********998 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   1.2e-05     0.022      12      40 ..       9      40 ..       3      44 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-05
                                      E-SSEEE-TTT--...EEEEEEE-SSS-S--- CS
                    zinc-ribbons_6 12 krgeqyhCeaCqe...dlkkealCpeCeqele 40
                                      ++++ y+C  C +     +    Cp+C+ +l 
  gi|300713085|ref|YP_003738897.1|  9 NEETAYECFRCGSiiiATTSPGRCPDCNGPLR 40
                                      456799******97777788899*****9997 PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   8.2e-05      0.15      13      26 ..       8      21 ..       6      21 .. 0.89
   2 ?    1.8   0.1     0.085   1.5e+02       7      16 ..      32      43 ..      31      47 .] 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.2e-05
                                      EEESSSSB-TTT-- CS
                          zf-RanBP 13 qNfawstkCvaCqa 26
                                      +N+ ++ +C++C++
  gi|300713085|ref|YP_003738897.1|  8 SNEETAYECFRCGS 21
                                      8***********97 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.085
                                      -SSS-..-EEES CS
                          zf-RanBP  7 CskCl..vqNfa 16
                                      C+ C+  ++N++
  gi|300713085|ref|YP_003738897.1| 32 CPDCNgpLRNRQ 43
                                      999997777776 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   8.6e-05      0.15      37      53 ..       6      22 ..       3      23 .. 0.87
   2 ?    1.4   0.3      0.15   2.8e+02      46      51 ..      31      36 ..      30      38 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-05
                    zinc_ribbon_10 37 keeleevkyrCpkCgal 53
                                      +e++ee+ y C+ Cg++
  gi|300713085|ref|YP_003738897.1|  6 SESNEETAYECFRCGSI 22
                                      7899***********86 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.15
                    zinc_ribbon_10 46 rCpkCg 51
                                      rCp C+
  gi|300713085|ref|YP_003738897.1| 31 RCPDCN 36
                                      799998 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.3   9.9e-05      0.18       6      37 ..      14      40 ..      13      43 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.9e-05
                       Zn-ribbon_8  6 YrCeeCghefevlqsisdapltaCPeCgsevr 37
                                      Y+C +Cg+   +    s   +  CP+C++++r
  gi|300713085|ref|YP_003738897.1| 14 YECFRCGSIIIATT--S---PGRCPDCNGPLR 40
                                      9******5544333..2...456*****9987 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0033         6      11      26 ..       5      20 ..       1      20 [. 0.86
   2 ?    6.7   0.3    0.0024       4.3       2      11 ..      32      41 ..      31      46 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0033
                          zf-TFIIB 11 eserggveidyCpqCr 26
                                      +se+++ + + C++C+
  gi|300713085|ref|YP_003738897.1|  5 KSESNEETAYECFRCG 20
                                      67889999*******7 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0024
                          zf-TFIIB  2 CPkCqdelee 11
                                      CP C+ +l+ 
  gi|300713085|ref|YP_003738897.1| 32 CPDCNGPLRN 41
                                      8888888875 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.8   6.4e-05      0.11      20      54 ..       5      37 ..       2      44 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.4e-05
                    OrfB_Zn_ribbon 20 eevnpayTSktCseCgsknkealsgrtfkCpnCgf 54
                                      +  + + T  +C +Cgs+     ++   +Cp+C+ 
  gi|300713085|ref|YP_003738897.1|  5 KSESNEETAYECFRCGSIIIA--TTSPGRCPDCNG 37
                                      5556677999***********..99999*****75 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.6     0.004       7.2       1      21 [.      14      36 ..      14      37 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.004
                      Rubredoxin_2  1 YvCsqCGfe..sakwfGrCpsCg 21
                                      Y+C +CG+   + +  GrCp+C+
  gi|300713085|ref|YP_003738897.1| 14 YECFRCGSIiiATTSPGRCPDCN 36
                                      8999999863366777******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 350.52
//
Query:       gi|300713086|ref|YP_003738898.1|  [L=69]
Description: hypothetical protein HacjB3_18838 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 518.50
//
Query:       gi|300713087|ref|YP_003738899.1|  [L=337]
Description: NAD(P)-specific glutamate dehydrogenase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-72  243.0   0.2    4.3e-72  242.8   0.2    1.1  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    5.7e-34  116.8   0.0      1e-33  116.0   0.0    1.5  1  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
     0.0014   18.0   0.0     0.0024   17.3   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.033   13.8   0.0      0.049   13.2   0.0    1.4  1  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.8   0.2   9.6e-76   4.3e-72       1     243 []     103     334 ..     103     334 .. 0.99

  Alignments for each domain:
  == domain 1  score: 242.8 bits;  conditional E-value: 9.6e-76
                                       T--TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HH CS
                     ELFV_dehydrog   1 GGsldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGldie 77 
                                       GGs++r+ea g++v+++++ ++++++ + le+++va++G+G vg +aa+ll ++ga++va+sD +G++y+p+G+d++
  gi|300713087|ref|YP_003738899.1| 103 GGSEGREEAPGRSVAIITQLVCEYYDRQ-LEDTTVAVQGYGSVGANAARLLDDWGATIVAISDVNGAMYEPDGIDTA 178
                                       9***********************9999.************************************************ PP

                                       HHHHHHHCSSSSTTHSHHSTSTSEEESHHSHHHHSS-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHH CS
                     ELFV_dehydrog  78 ellelkeerksvkeykkssekkaeyieneeellelkvdilvPcAtqneideenakalikngvklvvEgANlpttqeA 154
                                       ++ ++ ee ++v++y+    +  ++i+n+ ell+l+vd+l+P+A+ n+i++ena+  i+  ++lvvEgAN+ptt+ A
  gi|300713087|ref|YP_003738899.1| 179 SVPSHDEEPEAVTTYA----D--TVISND-ELLTLDVDVLIPAALGNVITKENAE-AIA--ADLVVEGANGPTTSTA 245
                                       ****************....3..689997.*************************.999..9*************** PP

                                       HHHHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHH CS
                     ELFV_dehydrog 155 keileeagvlvvpdkaaNaGGVtvSslEmlqnlarlswteeevdeklkkimkeifkavveeaeeykqelvkganiag 231
                                       ++il +++v vvpd++aNaGGVtvS++E+lq+++r sw+ e+v+++l+++m+++++av  + e+++++++++a+i++
  gi|300713087|ref|YP_003738899.1| 246 DSILAKRDVAVVPDILANAGGVTVSYFEWLQDINRRSWSLERVNDELEAEMQAAWDAVRVKFEQRDVTWRDAAYIVA 322
                                       ***************************************************************************** PP

                                       HHHHHHHHHHCT CS
                     ELFV_dehydrog 232 fekvaeamkaqG 243
                                       + ++aea++a+G
  gi|300713087|ref|YP_003738899.1| 323 LSRIAEAHEARG 334
                                       **********99 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.0   2.3e-37     1e-33      46     130 .]       2      85 ..       1      85 [. 0.98

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 2.3e-37
                                       -HHHHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHHHHHHG.GG-BTTTEEEEBBTTB-HHHHH CS
                   ELFV_dehydrog_N  46 nldevkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrfvrelakkfiGpgiDvpApDvgtgarema 122
                                       + de+  L+++mt+K+a++dlpfGGakgg+ ++pk+ls+ e er+trrf++el+ ++iGp++D+pApD+gt++++ma
  gi|300713087|ref|YP_003738899.1|   2 TRDECVGLGMWMTWKCAVMDLPFGGAKGGIAVNPKELSPGEKERLTRRFAQELR-DVIGPNQDIPAPDMGTDPQTMA 77 
                                       578999************************************************.********************** PP

                                       HHHHHHHH CS
                   ELFV_dehydrog_N 123 wladeykk 130
                                       wl+d y++
  gi|300713087|ref|YP_003738899.1|  78 WLMDAYSM 85 
                                       ******97 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.3e-07    0.0024      30      69 ..     127     166 ..     120     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.3e-07
                                       SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSH CS
                      2-Hacid_dh_C  30 lgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrsk 69 
                                         ++l++ tv++ G+G++G ++a++l  +g+ ++a++  +
  gi|300713087|ref|YP_003738899.1| 127 YDRQLEDTTVAVQGYGSVGANAARLLDDWGATIVAISDVN 166
                                       56799****************************9998764 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.049       2      34 ..     131     163 ..     130     239 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                                       HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE CS
                              IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvgl 34 
                                       l++ ++av GyGs G + a+ l d g  +v   
  gi|300713087|ref|YP_003738899.1| 131 LEDTTVAVQGYGSVGANAARLLDDWGATIVAIS 163
                                       7899**********************9876433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2387.59
//
Query:       gi|300713088|ref|YP_003738900.1|  [L=156]
Description: uroporphyrinogen-III synthase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-27   96.7   0.1    1.4e-27   96.6   0.1    1.0  1  HEM4             Uroporphyrinogen-III synthase HemD
  ------ inclusion threshold ------
       0.16   12.0   0.0         12    5.9   0.0    2.1  2  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.1   1.5e-31   1.4e-27      95     230 ..       2     141 ..       1     143 [. 0.95

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 1.5e-31
                                       SEE-..SSSHHHHGGGS-.---EEEEEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHHHTT--S CS
                              HEM4  95 dlvpseegtaegLaeelaeslagkrvlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkealkagevd 171
                                       d+vps ++t++gL+e+la +++g++v + r+ ++++ l++gLe++ga+v+e  +Y+ + +e + ++++ a+ +g++d
  gi|300713088|ref|YP_003738900.1|   2 DIVPS-TFTSAGLVEALADKISGSTVEIARSANGSNVLPQGLESAGADVHETQLYQLEKPETAGQSVSLAI-DGQLD 76 
                                       689**.***************************************************88877777777777.99*** PP

                                       EEEESSHHHHHHHHHH-S-HH......HHHCTSEEEEESHHHHHHHHHTT---SEEETS--HHHH CS
                              HEM4 172 avvftSpstvrnllellkdeg......delkevkvaaiGptTaealkklglkvdvvaeeptaegl 230
                                       +v+ftS++tv++++e++++++      ++l+e+ v aiG  Ta+a++++gl+vd+++e  + e+l
  gi|300713088|ref|YP_003738900.1|  77 GVLFTSSRTVDHFFEIATEQAdvtelkRGLEEAVVGAIGAPTARAIRDNGLEVDIIPESVDFEQL 141
                                       ******************999***************************************99987 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0048        43       9      51 ..       5      53 ..       3      70 .. 0.81
   2 ?    5.9   0.0    0.0013        12      17      53 ..     119     152 ..     114     156 .] 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0048
                   Glyco_trans_4_2  9 ssvhtlr.lakeLakr..gyeVhvitp.kkga..kdeleaegihvhrlk 51
                                      +s++t+  l+++La++  g +V+++ + +++    + le++g+ vh+++
  gi|300713088|ref|YP_003738900.1|  5 PSTFTSAgLVEALADKisGSTVEIARSaNGSNvlPQGLESAGADVHETQ 53
                                      68888776899999999999****9995555577889999999999986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0013
                   Glyco_trans_4_2  17 akeLakrgyeVhvitpkkgakdeleaegihvhrlkvd 53 
                                       a++++++g+eV++i   ++   +++ +g++v++++++
  gi|300713088|ref|YP_003738900.1| 119 ARAIRDNGLEVDIIPESVD---FEQLAGLTVQEVRNR 152
                                       7899*********987777...9999******99843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1157.62
//
Query:       gi|300713089|ref|YP_003738901.1|  [L=385]
Description: oxalate/formate antiporter [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-38  132.7  76.0    2.8e-31  108.7  41.7    2.0  2  MFS_1     Major Facilitator Superfamily
    4.7e-07   28.7  15.0    4.7e-07   28.7  15.0    2.3  3  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7  41.7   3.1e-35   2.8e-31      22     341 ..      18     337 ..       2     340 .. 0.86
   2 !   37.7  26.3   1.2e-13   1.1e-09      43     173 ..     251     382 ..     250     385 .] 0.88

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 3.1e-35
                             MFS_1  22 alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlg 98 
                                        la+dl i   ++gl++tl+ ++++++++p+G++ d +G+rr+ llg +l + g l l++a+ +w ++ l  l ++g
  gi|300713089|ref|YP_003738901.1|  18 PLATDLSIPLPALGLVFTLFVAFQSLSQFPVGWWRDTHGPRRISLLGGVLAGGGYLGLAYATAIWQIYMLYSLGAVG 94 
                                       6899**************************************999999999999555558899************** PP

                             MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpee 175
                                        g+++++++  + +wfp+ +rg+ +g+ +++f++G+++  +   + a+ + +++v   ++++  +++++++++l ++
  gi|300713089|ref|YP_003738901.1|  95 VGIVYTVAINSALKWFPD-HRGLTTGIGTMAFAAGSAVFIPYVRANATPGAYSGVLRNIGVLIGVGVICGAVVL-RD 169
                                       ******************.*****************98877778888788899999999999999988755555.88 PP

                             MFS_1 176 pperkrkspkeeekgtgpaplvp........awkallkdpvlwillialllfffgfsglltllplylqevlglsgll 244
                                       pp+ + +++ +     + +p  p         w+++++  ++w ll +++++ ++  +l++ + ++  +++gl+ ++
  gi|300713089|ref|YP_003738901.1| 170 PPAGWSQETSTT----AATPENPtttekegfTWREMVRTWQFWTLLGMFAFVNTAGLMLTAKVVSF-AQQFGLT-AI 240
                                       888888888888....4444444556888999********99955555555555555566666667.*******.56 PP

                             MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsl 321
                                        +++   +lalvg i+++++g +sd + r++++ ++ +l+ +++++l++++ + s++ ++l++++++f+++  f+++
  gi|300713089|ref|YP_003738901.1| 241 VGTVSATVLALVGGISRIVVGGVSDWVDRKWAIAISSILTGVGLFLLVWFGQIGSSLGFILAVIIATFFWSPQFALF 317
                                       6666678888888888************************************************************* PP

                             MFS_1 322 lalasdlappeeagtasglf 341
                                        +++ d++++ ++ t ++l+
  gi|300713089|ref|YP_003738901.1| 318 PSIVGDYYGQAHSSTNYALV 337
                                       ********999999888876 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 1.2e-13
                             MFS_1  43 lgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa.sslw.lllvlrvlqGlgagalfpagaaliadwfpk 116
                                       l+ +++ +++G +sd + r++ + ++ +l+++g +ll +f+ +++   ++++ +++ ++ +  f++  +++ d++ +
  gi|300713089|ref|YP_003738901.1| 251 LVGGISRIVVGGVSDWVDRKWAIAISSILTGVGlFLLVWFGqIGSSlGFILAVIIATFFWSPQFALFPSIVGDYYGQ 327
                                       677899***************************444444757555557999999999999***************** PP

                             MFS_1 117 eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllp 173
                                        + +  ++l+++g   G + g +l+g+l++  +W+ +f++ +i++++a+    +ll+
  gi|300713089|ref|YP_003738901.1| 328 AHSSTNYALVYLGKVGGGVAGGVLAGVLITMTSWSMTFLVGGILAVVAGFG--ALLL 382
                                       ************************************************772..3333 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   2.1      0.19   1.7e+03     266     333 ..      35     100 ..      29     107 .. 0.65
   2 !   28.7  15.0   5.2e-11   4.7e-07     143     381 ..     118     355 ..     112     363 .. 0.82
   3 ?   -0.4   1.2     0.035   3.2e+02     142     185 ..     340     375 ..     332     383 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.19
                             MFS_2 266 lvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaal 333
                                       +++++ + l+ + + +     g +++ llg +l+  +++++  +  + ++  ++l+ ++ +gvg+ ++
  gi|300713089|ref|YP_003738901.1|  35 TLFVAFQSLSQFPVGWWRDTHGPRRISLLGGVLAGGGYLGLAYA--TAIWQIYMLYSLGAVGVGIVYT 100
                                       55555555666666677777777888888888888777777666..6666666666666666665544 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 5.2e-11
                             MFS_2 143 svlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervem....rkkekteqkeklslle 215
                                       + +g++++a+   +++   ++ + ++ +y+ ++  i +L+ +gvi  + + ++  +     ++  +++ ++++++ +
  gi|300713089|ref|YP_003738901.1| 118 TGIGTMAFAAGSAVFIPYVRA-NATPGAYSGVLRNIGVLIGVGVICGAVVLRDPPAGwsqeTSTTAATPENPTTTEK 193
                                       556777777777777777776.999**********************999999998887532233333334444433 PP

                             MFS_2 216 q...lkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkk 289
                                       +   ++e+ r  +f++ll +f ++ +a+++l + ++ +++ +  ++   +v+++v+ + + ++ +++  +  + ++k
  gi|300713089|ref|YP_003738901.1| 194 EgftWREMVRTWQFWTLLGMFAFVNTAGLMLTAKVVSFAQQFGLTAIVGTVSATVLALVGGISRIVVGGVSDWVDRK 270
                                       24559***********************************9988************99999**************** PP

                             MFS_2 290 ntyllgalltivllvlvlll.qpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfi 365
                                        +++++++lt v+l+l++++ q ++ l f+++++ia f+    + l++s+++d +       G+ + ++ +a++ + 
  gi|300713089|ref|YP_003738901.1| 271 WAIAISSILTGVGLFLLVWFgQIGSSLGFILAVIIATFFWSPQFALFPSIVGDYY-------GQAHSSTNYALVYL- 339
                                       ******************999*****************************99974.......45566666666554. PP

                             MFS_2 366 sklatgiglgvsgllL 381
                                        k+++g+++gv++++L
  gi|300713089|ref|YP_003738901.1| 340 GKVGGGVAGGVLAGVL 355
                                       4666677766666665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.035
                             MFS_2 142 lsvlggvlaailafllvlilgglkserkgylifaliialLmllg 185
                                        +v+ggv++ +la++l+ +++        ++++ l++ +L++++
  gi|300713089|ref|YP_003738901.1| 340 GKVGGGVAGGVLAGVLITMTS--------WSMTFLVGGILAVVA 375
                                       556777777777777755555........455555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2613.04
//
Query:       gi|300713090|ref|YP_003738902.1|  [L=86]
Description: transport ATPase 3 ( substrates copper/metal cation) [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 617.38
//
Query:       gi|300713091|ref|YP_003738903.1|  [L=127]
Description: transport ATPase 3 ( substrates copper/metal cation) [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.089   12.0   3.9      0.098   11.8   3.9    1.1  1  CitMHS    Citrate transporter


Domain annotation for each model (and alignments):
>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.9   5.5e-06     0.098      63     139 ..      27     110 ..       3     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.5e-06
                                       xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                            CitMHS  63 kllrlaggkrd.llvllvlltallsafvsndgv......vlimipivlslakrlkklppllliplalaaniggaltp 132
                                        +l++++ + d l+++ vl++ l s+   ++g       v++m+ +v+  a   +  + +l  ++al + i  ++tp
  gi|300713091|ref|YP_003738903.1|  27 VCLKVGRPNMDvLIAIAVLAAYLYSMATYLTGGrdpyfdVAVMVLAVVQSATISSHASNALHSAIALTSLIHASMTP 103
                                       578999999999999999999999999999999******6666666666555457777778899************* PP

                                       xxxxxxx RF
                            CitMHS 133 iGtpttr 139
                                        G  tt 
  gi|300713091|ref|YP_003738903.1| 104 AGSTTTA 110
                                       **99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 988.54
//
Query:       gi|300713092|ref|YP_003738904.1|  [L=82]
Description: hypothetical protein HacjB3_18868 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 664.40
//
Query:       gi|300713093|ref|YP_003738905.1|  [L=375]
Description: transport ATPase 3 ( substrates copper/metal cation) [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-29  104.1   3.0    1.9e-29  103.4   3.0    1.3  1  Hydrolase     haloacid dehalogenase-like hydrolase
    7.5e-06   25.9   0.1    1.3e-05   25.1   0.1    1.3  1  Hydrolase_3   haloacid dehalogenase-like hydrolase
    0.00032   20.3   0.7    0.00032   20.3   0.7    2.1  2  E1-E2_ATPase  E1-E2 ATPase
  ------ inclusion threshold ------
      0.038   14.4   0.5       0.16   12.4   0.5    2.2  1  HAD           haloacid dehalogenase-like hydrolase
      0.044   13.4   1.2       0.13   11.9   0.6    1.9  2  SpoVAE        Stage V sporulation protein AE1
       0.21   11.6   1.4         19    5.4   0.5    2.8  2  DUF2148       Uncharacterized protein containing a ferredoxin


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   3.0   6.5e-33   1.9e-29       3     210 .]      51     259 ..      50     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 6.5e-33
                                       EEEEESBTTTBCHHHHHHHHHHHH...CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE........H CS
                                       xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........x RF
                         Hydrolase   3 tvvfDkdGTLttgepsvedvivsa...alalaaaletgsehpigkalvaaakarsgaltgfatfigrg........a 68 
                                       +vvfDk+GTLttg ++++dv+       la aaa e  s hpi++a+  aa   + ++ +f++ ++r         +
  gi|300713093|ref|YP_003738905.1|  51 VVVFDKTGTLTTGAMELVDVVGDDpdeVLAVAAAVERQSSHPIAAAIDDAAPLTTRSVLSFER-ADRTmsalvddtR 126
                                       79********************9999999999999999*********9999999889988998.555578899999* PP

                                       HHHTHHHHHHHH..HCHHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEE CS
                                       xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                         Hydrolase  69 yaigkpewltal..dippdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvllt 141
                                       + ig p+ ++a   +ip + +aa+++a +       +  ++ +++++t+ d+  +++  + +v  L +a  e+v+lt
  gi|300713093|ref|YP_003738905.1| 127 VIIGHPDSFDADewTIPAEIEAAVTDAYESCTHPTAVawEGVVRGIVTVRDT--PRENWERVVSDLADADREIVVLT 201
                                       *******9999999666666666666655444333333456***********..*********************** PP

                                       SSEHHHHHHHHHH.TTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                                       xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                         Hydrolase 142 gdnpetaeraanq.lGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                                       gd++++ e  an+ +            ++++a + pe k+ +++ L++++  + m+GDg nDa+ala A+
  gi|300713093|ref|YP_003738905.1| 202 GDDERMTETFANHpAV-----------DHVFADVRPESKEVIVQGLRERG-TTTMIGDGTNDAPALASAD 259
                                       *************555...........788****************6555.8****************98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   4.3e-09   1.3e-05     206     253 ..     242     289 ..     236     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 4.3e-09
                                       EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHH CS
                       Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVak 253
                                       +  +GDg ND + L  a+lg+A+ ++++ +++aAd v+ +   d+V +
  gi|300713093|ref|YP_003738905.1| 242 TTMIGDGTNDAPALASADLGIAVSSGTDLAIEAADAVVLDDRLDAVPE 289
                                       778**********************************99998888865 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.7   1.1e-07   0.00032     151     178 ..       3      30 ..       1      33 [. 0.90
   2 ?   -1.0   0.5      0.36   1.1e+03     149     175 ..     306     332 ..     290     342 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.1e-07
                                       HHHHHHHHS-TTHHHHHHHHHHHHHHHH CS
                      E1-E2_ATPase 151 alallvaaiPcaLplavplalalgarrl 178
                                       ++++lv+++Pc L++a+plala+++r  
  gi|300713093|ref|YP_003738905.1|   3 GVSVLVVSCPCSLGIATPLALAAATRDV 30 
                                       79**********************9976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.36
                                       HHHHHHHHHHS-TTHHHHHHHHHHHHH CS
                      E1-E2_ATPase 149 lralallvaaiPcaLplavplalalga 175
                                       + a +  ++a+P a++ +++  +a+ +
  gi|300713093|ref|YP_003738905.1| 306 VWAAGYNTIALPLAMAGVITPLIAAVM 332
                                       555566678888888877776666544 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   5.2e-05      0.16      85     187 ..     178     255 ..      52     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.2e-05
                               HAD  85 lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrew 161
                                       + ++ + ++++  ++a  ++vv++g  ++++e ++++  +d+v a        +  e    + +v g      lre 
  gi|300713093|ref|YP_003738905.1| 178 TPRENWERVVSDLADADREIVVLTGDDERMTETFANHPAVDHVFAD-------VRPE--SKEVIVQG------LRE- 238
                                       344699999999989999*****************99999999999.......7777..77777777......666. PP

                               HAD 162 laaegegidleevvayGDspsDlpll 187
                                            +g    ++  +GD+ +D p+l
  gi|300713093|ref|YP_003738905.1| 239 -----RG----TTTMIGDGTNDAPAL 255
                                       .....33....489999999999987 PP

>> SpoVAE  Stage V sporulation protein AE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   4.5e-05      0.13      45     139 ..      40     129 ..      25     134 .. 0.84
   2 ?   -1.2   0.0      0.45   1.3e+03      42      71 ..     185     214 ..     160     227 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
                            SpoVAE  45 elikeakkdpvlvmvDDkGkkgegkGEkaleevlkseeievlgviAvasntkkvegikvdvsvdregelveaavdke 121
                                       e+++e  +d  +v++D +G+  +g+ E  l  v+ ++  ev   +Ava+  ++++   + +++d+ + l++ +v   
  gi|300713093|ref|YP_003738905.1|  40 ETVLERIDDSSVVVFDKTGTLTTGAME--LVDVVGDDPDEV---LAVAAAVERQSSHPIAAAIDDAAPLTTRSVLSF 111
                                       56777888999********99988766..667777766676...58888899999999*****************99 PP

                            SpoVAE 122 GkaekelkkleGDtvdvl 139
                                        +a+++++ l  Dt  ++
  gi|300713093|ref|YP_003738905.1| 112 ERADRTMSALVDDTRVII 129
                                       999999999999998776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.45
                            SpoVAE  42 elvelikeakkdpvlvmvDDkGkkgegkGE 71 
                                       ++v+ +  a ++ v++  DD+ ++++ +  
  gi|300713093|ref|YP_003738905.1| 185 RVVSDLADADREIVVLTGDDERMTETFANH 214
                                       566666667777777777776665555444 PP

>> DUF2148  Uncharacterized protein containing a ferredoxin domain (DUF2148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.021        62      11      33 ..      14      36 ..       9      41 .. 0.91
   2 ?    5.4   0.5    0.0064        19       7      30 ..     255     282 ..     252     288 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.021
                           DUF2148 11 DlGiAlgsavkvaadlrvDnRvm 33
                                       lGiA   a ++a +   DnR++
  gi|300713093|ref|YP_003738905.1| 14 SLGIATPLALAAATRDVTDNRIL 36
                                      59*******************97 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0064
                           DUF2148   7 fkaiDlGiAlgsavkva....adlrvDn 30 
                                       + + DlGiA+ s  + a      + +D 
  gi|300713093|ref|YP_003738905.1| 255 LASADLGIAVSSGTDLAieaaDAVVLDD 282
                                       6689********6555522215555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3005.15
//
Query:       gi|300713094|ref|YP_003738906.1|  [L=349]
Description: putative deoxyhypusine synthase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.5e-100  333.9   0.0   9.1e-100  333.6   0.0    1.1  1  DS        Deoxyhypusine synthase


Domain annotation for each model (and alignments):
>> DS  Deoxyhypusine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.6   0.0  5.1e-104  9.1e-100       2     286 ..      61     344 ..      60     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: 333.6 bits;  conditional E-value: 5.1e-104
                                DS   2 llesyekigfqatslgeaidilnkmrkdekctiflgltsnlissGlreiiadlvkeklvdvivtTaggieeDlikal 78 
                                       +le+y+++gfqat+l+eaidi ++m +d ++ti+l++tsn+issGlre++a+lv+e++vdv++tTag++ eD+ik+ 
  gi|300713094|ref|YP_003738906.1|  61 MLEAYATTGFQATQLAEAIDIAEQM-QDADATIYLTCTSNIISSGLREVVAYLVREGYVDVLITTAGSLAEDVIKTA 136
                                       89***********************.899************************************************ PP

                                DS  79 gkktylgdfelddeeLrekginRignllvpnenyckfedwvreildkleeeqkvwspselikelGkeindeeSilyw 155
                                       ++ + +g++++d+++Lre+ginR+gnl+vp+++y  +e+++ ++++++ +++kv++p+ + +elG+ ++d +Sil++
  gi|300713094|ref|YP_003738906.1| 137 KP-FKMGEWDADEAALREQGINRLGNLFVPSDRYVWLEEYLYDFFEEFFADEKVRTPTAFARELGETLDDPNSILKQ 212
                                       **.***********************************************999************************ PP

                                DS 156 AykndipvfcpaltDgslGdqlllfhsvkekkklkldivkDirelndialkakktgaiilGGGvpKhhilnanlmrn 232
                                       A++nd+pv+cpaltD ++G  +l++++   ++++ ++i++D+++l +  + a++tg+i +GGGvpKhh++ +nl+r 
  gi|300713094|ref|YP_003738906.1| 213 AADNDVPVYCPALTDAEVGN-FLYYYRQGYDSEVGIEILDDYDSLIEDGMLADTTGLIAVGGGVPKHHAIMTNLFRG 288
                                       ********************.777775558899******************************************** PP

                                DS 233 gadyavyittaqefdGslsgatldEavSwgkikaea..ksvkvyaDaTivlPLlva 286
                                       gady+vyi+t+ e dGslsga ++EavSwgkik+++  + ++v a+aT+v+PLlva
  gi|300713094|ref|YP_003738906.1| 289 GADYVVYISTGMEGDGSLSGAPPNEAVSWGKIKDDErtNYTQVEAEATLVFPLLVA 344
                                       *********************************96644789**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2782.78
//
Query:       gi|300713095|ref|YP_003738907.1|  [L=244]
Description: uroporphyrinogen-III synthase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-38  131.5   0.9    3.4e-38  131.3   0.9    1.0  1  HEM4      Uroporphyrinogen-III synthase HemD


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.9   1.9e-42   3.4e-38       4     230 ..      20     232 ..      17     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 1.9e-42
                                       HHHHHHTTEEEEE---EECCECCHHHHHHHHHT.....--SEEEE--HHHHHHHHHHHHHTT---HHHHHCSEEESS CS
                              HEM4   4 aealearGaeplelPlieiepaedraelraalddleagkydwliftSanavealfealkreeedvkalaslkvaavG 80 
                                       +e+l+ + + p+  P++ i+p        ++ +       d++iftS ++v+  ++a         + + ++v+avG
  gi|300713095|ref|YP_003738907.1|  20 VEYLQTLDVSPIPDPMLAITP------TGQVPQ-----HADYCIFTSETGVDLAATAG-------WKQRGTTVCAVG 78 
                                       688999999999999999999......555555.....679************33333.......466789****** PP

                                       HHHHHHHHHTT---SEE-..SSSHHHHGGGS-.---EEEEEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHH CS
                              HEM4  81 paTaraLeelglrvdlvpseegtaegLaeelaeslagkrvlllrgeiarddlaegLeergaevdevevYetvpaeee 157
                                       ++Ta aL ++g+ vd+vps ++t+ gL++el  ++ g+ v l r+ ++++ l+egLe++ga v e+ +Y+ +++e +
  gi|300713095|ref|YP_003738907.1|  79 DQTATALCNRGYSVDIVPS-TFTSTGLVDELSTDVEGQIVELARSAHGSEVLVEGLEAAGAIVSEICLYRLERPETA 154
                                       *******************.***************************************************999888 PP

                                       HHHHHHHHHTT--SEEEESSHHHHHHHHHH-S-HH......HHHCTSEEEEESHHHHHHHHHTT---SEEETS--HH CS
                              HEM4 158 peelkealkagevdavvftSpstvrnllellkdeg......delkevkvaaiGptTaealkklglkvdvvaeeptae 228
                                        ++++ a+ +g++d+++ftSp tv++++++++++       +el+e+ v aiG  T++a+ k g+ vdv++++    
  gi|300713095|ref|YP_003738907.1| 155 GQSVSLAV-DGKLDGILFTSPKTVEHFVQIATERDavaalqRELEETIVGAIGAPTKRAVDKRGIAVDVMPDTVGFT 230
                                       88877777.99*********************999************************************987766 PP

                                       HH CS
                              HEM4 229 gl 230
                                       +l
  gi|300713095|ref|YP_003738907.1| 231 QL 232
                                       55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1739.95
//
Query:       gi|300713096|ref|YP_003738908.1|  [L=388]
Description: multidrug ABC transporter [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-41  141.7  45.4      7e-29  100.9  28.3    2.0  2  MFS_1     Major Facilitator Superfamily
    2.8e-07   29.8  23.1    6.3e-05   22.0   6.8    2.5  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.17   10.2  26.1        0.8    8.0  26.1    1.9  1  MFS_3     Transmembrane secretion effector
        9.6    4.4  10.2        5.2    5.2   1.5    2.9  3  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9  28.3   1.6e-32     7e-29       1     257 [.      16     259 ..      16     261 .. 0.83
   2 !   48.8  19.7     1e-16   4.7e-13       3     174 ..     219     385 ..     214     388 .] 0.88

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 1.6e-32
                             MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalgll 77 
                                       ++ +++++ ++ s+++palp a++e+  is+++++lll++++l  ++++lp+G l+dr+Gr+++l+ +l++f+l++ 
  gi|300713096|ref|YP_003738908.1|  16 IFASTLVAVMGVSLISPALP-AVQEAWDISEAQASLLLSAFTLPGIFLTLPIGLLTDRIGRKPILIPALVVFGLSGG 91 
                                       578999**************.******************************************************66 PP

                             MFS_1  78 lllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav 153
                                        ++f +s + l+lvlr++qG++++a++ + ++l+ d++++e+r   ig  +a  ++Ga+  pllgg+la  + W+a+
  gi|300713096|ref|YP_003738908.1|  92 GIIF-TSDFtLILVLRAIQGAASSAIAMLTVTLLGDLYSGEQRRVLIGTNAAILAMGAAGYPLLGGALA-TVAWSAP 166
                                       6667.66666***********************************************************.677**** PP

                             MFS_1 154 fyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdp......vlwillialllfffgfs 224
                                       f  + +++++a+       + e+p+r  +++               ++a+l+ p      v+ ++l+++ +f + + 
  gi|300713096|ref|YP_003738908.1| 167 FACFLLALIVAVP---GITLLEEPQRDENNTNSS------------IRAFLTGPtsmtpfVV-LYLAIFGIFVILYG 227
                                       9988888888833...444455555555556566............5666666644332222.25555555555555 PP

                             MFS_1 225 glltllplylqevlglsglllaglllallalvg 257
                                       + lt +p++l   + ls    +gll++l+a+ +
  gi|300713096|ref|YP_003738908.1| 228 AQLTAVPFLLANEYQLS-SAGIGLLVGLPAVTM 259
                                       59***************.577777777777654 PP

  == domain 2  score: 48.8 bits;  conditional E-value: 1e-16
                             MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalgllll 79 
                                       +++f++ +++   ++a+p +la+++++s + igll++l a++++++++ + r+   + +   + lg++++++g l++
  gi|300713096|ref|YP_003738908.1| 219 FGIFVILYGAQ--LTAVPFLLANEYQLSSAGIGLLVGLPAVTMGATAMQGDRVLRSLTSFQSIALGFVSYGIG-LVG 292
                                       34444444444..46666699************************************7777************.555 PP

                             MFS_1  80 l.fasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfy 155
                                       + +a s+++++ + +l Glg+g++ p+  +++ + +p+e rg+ +++ ++   lG+ +gp+l+   a+++g+r + +
  gi|300713096|ref|YP_003738908.1| 293 VaVADSIYVVAGALLLFGLGQGLAEPITDTALNERAPDEFRGSIMSIRTSVLRLGTTVGPPLSVGAAALFGYRQTLL 369
                                       52558888********************************************************************* PP

                             MFS_1 156 ilaivsllafvlfllllpe 174
                                       + + +++l +v    ++++
  gi|300713096|ref|YP_003738908.1| 370 VSGTAAFLIGV---TWFTV 385
                                       **********9...56554 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   6.8   1.4e-08   6.3e-05      44     151 ..      44     148 ..       9     188 .. 0.85
   2 !   13.3   8.3   6.3e-06     0.028      19     181 ..     219     375 ..     202     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.4e-08
                                       ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHH CS
                          Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlas 120
                                       s+ + +l++s+f + +i+  l +gll+dr+GRk++l+ a v+f  ++  ++++     + +++v R + G +  ++ 
  gi|300713096|ref|YP_003738908.1|  44 SEAQASLLLSAFTLPGIFLTLPIGLLTDRIGRKPILIPALVVFGLSGGGIIFTS---DFTLILVLRAIQGAASSAIA 117
                                       677899***************************************999999999...8******************* PP

                                       HHHHHHHHTTS-SCCHHHHHHHHHHHHHHHH CS
                          Sugar_tr 121 vlvPmyisEiApkklRgalvslyqlaitfGi 151
                                       +l+ ++++ +   + R  l++ +   +++G 
  gi|300713096|ref|YP_003738908.1| 118 MLTVTLLGDLYSGEQRRVLIGTNAAILAMGA 148
                                       ************************9999996 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 6.3e-06
                                       GGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH- CS
                          Sugar_tr  19 igafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaa 95 
                                        g f+ l++++         ++++ ss  +gl+v++  v   ++++ +  +   +   +s++ + v + ig v  a+
  gi|300713096|ref|YP_003738908.1| 219 FGIFVILYGAQLTAVPFLLANEYQLSSAGIGLLVGLPAVTMGATAMQGDRVLRSLTSFQSIALGFVSYGIGLVGVAV 295
                                       555555555555555444444455567777777777777777777777777777777788999999999******** PP

                                       TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHH CS
                          Sugar_tr  96 akgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwri 172
                                       a+   s++v++ + +l G+g Gla  ++ + ++E Ap++ Rg ++s+  + + +G  v+  + +g +   +   +r 
  gi|300713096|ref|YP_003738908.1| 296 AD---SIYVVAGALLLFGLGQGLAEPITDTALNERAPDEFRGSIMSIRTSVLRLGTTVGPPLSVGAAALFG---YRQ 366
                                       **...**************************************************9999888888865555...566 PP

                                       HHHCCHHHH CS
                          Sugar_tr 173 llglqlvpa 181
                                       +l ++   a
  gi|300713096|ref|YP_003738908.1| 367 TLLVSGTAA 375
                                       666655555 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  26.1   0.00018       0.8      13     391 ..      14     383 ..       7     387 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00018
                             MFS_3  13 rviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvs 89 
                                       +vi++++lv+ +G  + + a   +      s+++  l+  a tLP ++l+++ G l+D + r+ +l+ + ++  l+ 
  gi|300713096|ref|YP_003738908.1|  14 AVIFASTLVAVMGVSLISPALPAVQEAWDISEAQASLLLSAFTLPGIFLTLPIGLLTDRIGRKPILIPALVVFGLSG 90 
                                       5777888888888777777777777777788888899999**************************99887776666 PP

                             MFS_3  90 vlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvl..va 164
                                         ++ ++ +      l+l+l  + g  ++  +      +g+l + ++ +  +  n+  + +  +  P lgG l  va
  gi|300713096|ref|YP_003738908.1|  91 GGIIFTSDF-----TLILVLRAIQGAASSAIAMLTVTLLGDLYSGEQRRVLIGTNAAILAMGAAGYPLLGGALatVA 162
                                       555444433.....344444444444444333344567899999888887777777777777788899999874466 PP

                             MFS_3 165 avGaalafavnalsylalivallrwkrevrksslprEkllealraglRftaasreikavlvRaalFglsasavlaLL 241
                                       +  + + f ++ +  +  i+ l + +r+ ++ +       +a+  g   t + + +   l+   +F +   a l+ +
  gi|300713096|ref|YP_003738908.1| 163 WSAPFACFLLALIVAVPGITLLEEPQRDENNTNSSI----RAFLTGP--TSMTPFVVLYLAIFGIFVILYGAQLTAV 233
                                       667777777766666666666666666555544433....3444442..556666666666667788888899999* PP

                             MFS_3 242 PlvardqldgdalvyGillg..alGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlll 316
                                       P++  ++ +  ++  G+l+g  a+ +GA  +a++  r+ ++l+s + ++l +v + + l+ +a+a+s++v++ +lll
  gi|300713096|ref|YP_003738908.1| 234 PFLLANEYQLSSAGIGLLVGlpAVTMGA--TAMQGDRVLRSLTSFQSIALGFVSYGIGLVGVAVADSIYVVAGALLL 308
                                       *99999999999999*998744677776..67888898899999999****************************** PP

                             MFS_3 317 gGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaaill 391
                                        G +  +a    ++a     P+  +g  +++   vl  g + G  l    a   + +++Ll++++a +l +++ +
  gi|300713096|ref|YP_003738908.1| 309 FGLGQGLAEPITDTALNERAPDEFRGSIMSIRTSVLRLGTTVGPPLSVGAAALFGYRQTLLVSGTAAFLIGVTWF 383
                                       *******************************************98888888899999999999987776666554 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0025        11       7      78 ..      17      89 ..      12     101 .. 0.79
   2 ?    5.2   1.5    0.0012       5.2     133     191 ..     100     158 ..      93     166 .. 0.84
   3 ?   -1.2   0.4       0.1   4.5e+02     131     182 ..     298     349 ..     215     362 .. 0.46

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0025
                                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
                              OATP  7 sllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggr.ghrPrwigigallmal 78
                                         +lv +m  ++++ ++  ++  ++++ ++  l++s++ +  i+l+l ++ + +r g++P +i + +++   
  gi|300713096|ref|YP_003738908.1| 17 FASTLVAVMGVSLISPALPAVQEAWDISEAQASLLLSAFTLPGIFLTLPIGLLTDRiGRKPILIPALVVFGLS 89
                                      44556668999999999999***********************************988889998666555333 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0012
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
                              OATP 133 llfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGf.llGsll 191
                                       +l+++   ++G+++++i  l ++ + D  + ++  +++g+  a+ ++G a G+ llG++l
  gi|300713096|ref|YP_003738908.1| 100 TLILVLRAIQGAASSAIAMLTVTLLGDLYSGEQRRVLIGTNAAILAMGAA-GYpLLGGAL 158
                                       467777889***************************************65.553566655 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.1
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              OATP 131 lvllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpa 182
                                        ++++  a ll G+G+ +  ++  + + + +  +     ++i +++  lG  
  gi|300713096|ref|YP_003738908.1| 298 SIYVVAGALLLFGLGQGLAEPITDTALNERAPDEFRGSIMSIRTSVLRLGTT 349
                                       2335555555666666666666655555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2796.78
//
Query:       gi|300713097|ref|YP_003738909.1|  [L=263]
Description: putative oxidoreductase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-24   86.1   0.1    7.2e-24   85.3   0.1    1.4  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
    1.5e-15   57.3   0.0    2.4e-15   56.6   0.0    1.4  1  ADH_zinc_N     Zinc-binding dehydrogenase
    5.3e-06   26.3   0.0      2e-05   24.4   0.0    1.9  1  ADH_N          Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.073   12.4   0.1       0.12   11.7   0.1    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.086   13.0   0.3       0.22   11.7   0.3    1.7  1  DapB_N         Dihydrodipicolinate reductase, N-terminus
       0.11   12.0   0.1       0.24   10.9   0.1    1.5  1  Citrate_bind   ATP citrate lyase citrate-binding
       0.11   12.9   0.1       0.23   11.9   0.1    1.5  1  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.1   2.8e-27   7.2e-24       1     133 []     140     260 ..     140     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 2.8e-27
                                       TT-SEEEETTSTTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE-- CS
                      ADH_zinc_N_2   1 lGAdevidyrtedfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyef 77 
                                       lG+de+++yr+e+fe+++  + vD+v+dtvg e + ++s++vl+ +G +vs+ g       +  a+   ++ +++e 
  gi|300713097|ref|YP_003738909.1| 140 LGVDEFVNYREERFESVI--DDVDIVVDTVGDE-IPTRSVDVLKEEGVFVSVVG------QPSDAL-TTNHDIDVEV 206
                                       8*************9777..56*********66.55*******888******97......455556.6679999999 PP

                                       GGG...-.-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
                      ADH_zinc_N_2  78 lfsmkasaqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                                       +  +++s +   l+++ +li++G++rp+++ +fple+aa+Ah+  e+ ++ GK+Vl
  gi|300713097|ref|YP_003738909.1| 207 VSGRSNS-PSL-LTTISELIDAGEVRPTISAEFPLENAAQAHEIGETEHVQGKLVL 260
                                       9965555.555.*******************************************8 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   9.6e-19   2.4e-15       1      93 [.     109     194 ..     109     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 9.6e-19
                                       HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHH CS
                        ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalk 77 
                                       gvG++avqlAk  G  via++s  +  +++++lG+de++ny     +er ++    ++vd+v+++vG  +  +++++
  gi|300713097|ref|YP_003738909.1| 109 GVGHMAVQLAKWKGTDVIATASGYSE-DYLRELGVDEFVNY----REERFESVI--DDVDIVVDTVG-DEIPTRSVD 177
                                       9******************8888874.**************....468888888..59*********.********* PP

                                       CEEEEEEEEECSC.TSS CS
                        ADH_zinc_N  78 llkpgGrlvvvGg.gkg 93 
                                       +lk+ G +v v g +++
  gi|300713097|ref|YP_003738909.1| 178 VLKEEGVFVSVVGqPSD 194
                                       ********988664444 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   7.7e-09     2e-05      27      65 ..       8      46 ..       2      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 7.7e-09
                                      TTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEE CS
                             ADH_N 27 levklplilGHEivGeveevgpevkklkvGdrVvvepli 65
                                      +e+++plilG +++G+veevg +v++++ Gd V+    +
  gi|300713097|ref|YP_003738909.1|  8 PENPFPLILGMNVSGVVEEVGASVTEFESGDAVFGVNGF 46
                                      67899****************************876655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.6e-05      0.12      30     104 ..     100     174 ..      92     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.6e-05
                                       EEEEES.TSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE--..-BTT CS
                       AlaDh_PNT_C  30 kvlviG.gGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtv..lipG 103
                                       +vl+ G +G +G  A++ ak  g +V ++        +l++lg    e ++  ee +++ + ++d+v+ tv   ip 
  gi|300713097|ref|YP_003738909.1| 100 RVLIHGaAGGVGHMAVQLAKWKGTDVIATASGY-SEDYLRELGVD--EFVNYREERFESVIDDVDIVVDTVgdEIPT 173
                                       7999994599****************9987665.57899999999..8899999**************999444665 PP

                                       S CS
                       AlaDh_PNT_C 104 k 104
                                       +
  gi|300713097|ref|YP_003738909.1| 174 R 174
                                       5 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   8.5e-05      0.22       2      87 ..     100     179 ..      99     191 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.5e-05
                                       EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HH CS
                            DapB_N   2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDFTtpe 78 
                                       +v+++Ga+G +G+  v++++  +++ + a  +  +     +d  + lg+++     ++++e+v++++d+++D    e
  gi|300713097|ref|YP_003738909.1| 100 RVLIHGAAGGVGHMAVQLAKW-KGTDVIATASGYS-----EDYLRELGVDEFVNYREERFESVIDDVDIVVDTVGDE 170
                                       89****************999.7888777766655.....566677777777777789**************76655 PP

                                       HHHHHHHHH CS
                            DapB_N  79 avlenlkla 87 
                                            ++++
  gi|300713097|ref|YP_003738909.1| 171 IPTRSVDVL 179
                                       555555555 PP

>> Citrate_bind  ATP citrate lyase citrate-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   9.3e-05      0.24      39      71 ..      27      62 ..      17      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.3e-05
                      Citrate_bind 39 GGasvv...yaDtiadlglaselanYgeysGapsee 71
                                       Gasv     +D++  ++   el+ Y+eys  p e+
  gi|300713097|ref|YP_003738909.1| 27 VGASVTefeSGDAVFGVNGFPELGSYAEYSSTPAEQ 62
                                      58888743349**********************987 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     9e-05      0.23       7      97 ..      98     194 ..      95     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9e-05
                     NAD_binding_7   7 gkkvlvvGg.GevAarkvrklleagakvtvvapevkeele.........elvklaeeelekdlegadlviaatddre 73 
                                       +++vl+ G+ G v+   v+    +g +v+  a      +e         e v+++ee +e+ ++++d+v+ ++ d e
  gi|300713097|ref|YP_003738909.1|  98 DRRVLIHGAaGGVGHMAVQLAKWKGTDVIATASGY---SEdylrelgvdEFVNYREERFESVIDDVDIVVDTVGD-E 170
                                       78999999549999999998888999888877773...2224455666699999****************99965.6 PP

                     NAD_binding_7  74 lneriaeaakarrilvnvadkpel 97 
                                       + +r ++  k+++++v v+ +p++
  gi|300713097|ref|YP_003738909.1| 171 IPTRSVDVLKEEGVFVSVVGQPSD 194
                                       778888888999****99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1886.03
//
Query:       gi|300713098|ref|YP_003738910.1|  [L=422]
Description: cationic amino acid transporter, putative [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-27   96.7  29.7    1.3e-27   96.7  29.7    2.0  2  AA_permease_2   Amino acid permease
    1.7e-13   50.0  37.6    1.7e-13   50.0  37.6    2.1  2  AA_permease     Amino acid permease
    0.00031   19.7   8.6    0.00031   19.7   8.6    2.0  2  Spore_permease  Spore germination protein


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7  29.7   2.2e-31   1.3e-27       9     371 ..       1     351 [.       1     355 [. 0.91
   2 ?    0.9   2.4     0.027   1.6e+02      10      56 ..     363     410 ..     355     415 .. 0.72

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 2.2e-31
                     AA_permease_2   9 lvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaaf.gkkvaflsa 81 
                                       ++ig ++g gif++   +a  +gpa++l ++ + +i  ++ ++  + l +         + y+++++ +  +a +++
  gi|300713098|ref|YP_003738910.1|   1 MAIGGMVGGGIFAVLgvVAVEAGPAAWLAFVASGVIA-FCAGYSALRLnAQ-ADGQLNPIAYVEQFTgSTTLAGMTG 75 
                                       79***********98855555*******999988888.8*********887.8999999*******9667889**** PP

                     AA_permease_2  82 wfnwfayvpvlasilsvaasyllnalg.pdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpli 157
                                       w++  +yv +++++++++++y++ ++g ++++g + l  li  + +i+++ +n+ g + s++   +l+ lk+ l+l+
  gi|300713098|ref|YP_003738910.1|  76 WTFIAGYVGTMSLYAYAFGGYFAELVGvESVVGLP-LRSLITLLAIIVFVGLNLAGAHASGRTEDVLVGLKV-LILL 150
                                       ***************************55888876.89999*******************************.699* PP

                     AA_permease_2 158 iliilglitvdgggfsslstetdtffpngwpgvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlv 232
                                       ++ + gl+++ ++g         + ++n   + ll+ +i + +f G+e     ++   +++ +++kai  +++ ++ 
  gi|300713098|ref|YP_003738910.1| 151 VFGLGGLYYGFQQGMI------RSGLGNLEVSALLAAAIGFVAFEGWELLLFDQNSieNPQQTIRKAIYGSIVGATA 221
                                       *********9998887......478999999999999999**********998888446669*************** PP

                     AA_permease_2 233 lyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlP 309
                                       ly+ v+++ +  v+   i+++s++  ++a+ +e + g++++ ++++++ +s   a+n+ ++++sr+   l+ d+ lP
  gi|300713098|ref|YP_003738910.1| 222 LYVIVAVVTTNLVSTQVIQQNSET--ALAVAAEPFLGQFGFLLISVAALFSTGSALNATLFSASRLSKMLVADDLLP 296
                                       ******************987764..58999999999**************************************** PP

                     AA_permease_2 310 rffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigali 371
                                       + ++ +n    p+r + +  +++ +l   ++l+   ++n+++s +sl++i++++ l+++a++
  gi|300713098|ref|YP_003738910.1| 297 NELHGSNSD-EPVRPLLVLGVLTALL---SSLG---SLNAISSFASLSFISIFGGLSLLAFL 351
                                       *******66.7************655...4554...59**************9998888876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.027
                     AA_permease_2  10 vigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElss 56 
                                       +ig +  sg +v     +a++ pa++++v+ +++++ ++  l+y E ss
  gi|300713098|ref|YP_003738910.1| 363 AIGCLGASGAIVGLlyHLATAEPAVFVTVLAIAIAV-ITTELLYFERSS 410
                                       555554556555556668899999999999999999.788888888877 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0  37.6   2.8e-17   1.7e-13       5     418 ..       1     375 [.       1     381 [. 0.80
   2 ?   -0.6   1.7     0.063   3.8e+02       4      42 ..     361     399 ..     354     406 .. 0.62

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.8e-17
                       AA_permease   5 ialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgp.elGfviGl 80 
                                       +a+gg++G g+f  lgvv+ +aGp +a+la++ +gv+ f++++s   +           +y+++f+g+  l++++G+
  gi|300713098|ref|YP_003738910.1|   1 MAIGGMVGGGIFAVLGVVAVEAGP-AAWLAFVASGVIAFCAGYSALRLNAQADGQLNPIAYVEQFTGStTLAGMTGW 76 
                                       79**********************.99*****************9999999998888899*******999******* PP

                       AA_permease  81 nylfswitvlaleltaa.sil..iqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafi 154
                                        +   ++ ++ l   a  +++  +  +e+v  lp    + ++ ++v++++nl+g+ ++g++e +l  +k+++++ f 
  gi|300713098|ref|YP_003738910.1|  77 TFIAGYVGTMSLYAYAFgGYFaeLVGVESVVGLPLRSLITLLAIIVFVGLNLAGAHASGRTEDVLVGLKVLILLVFG 153
                                       *4444333332222222022200223344666666666699999********************************* PP

                       AA_permease 155 ivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafknfisvfvivvfaftGielvaiiagEvkdPeks 231
                                       ++g  + +++++ +          ++    nl             + + +++i ++af G el+      +++P+++
  gi|300713098|ref|YP_003738910.1| 154 LGGLYYGFQQGMIRS--------GLG----NLE-----------VSALLAAAIGFVAFEGWELLLFDQNSIENPQQT 207
                                       ***877777776666........222....333...........34789999************************* PP

                       AA_permease 232 iPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinaviltaalssanssl 308
                                       i kai   ++  t +Yv+++++ + lv+++  +  +++a    + v +  ++g  ++  li ++ l ++ s++n+ l
  gi|300713098|ref|YP_003738910.1| 208 IRKAIYGSIVGATALYVIVAVVTTNLVSTQVIQQNSETA----LAVAAEPFLGQFGF-LLISVAALFSTGSALNATL 279
                                       *******************************99888777....55888888887777.688999999********** PP

                       AA_permease 309 ysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliil 385
                                       +sasR+   l  d+l+P  l +++ + +P+r +l+  ++ +l+   +sl +      n +++++ l+++++++  +l
  gi|300713098|ref|YP_003738910.1| 280 FSASRLSKMLVADDLLPNELHGSN-SDEPVRPLLVLGVLTALL---SSLGSL-----NAISSFASLSFISIFGGLSL 347
                                       *****************9999876.789***998765555555...555555.....55578888888888877777 PP

                       AA_permease 386 sylrfRkalkyqgrsieelgfkaallplgvilv 418
                                               l+ ++  +++l+++ +l+  g+i++
  gi|300713098|ref|YP_003738910.1| 348 LAF-----LERESVVTALLPAIGCLGASGAIVG 375
                                       666.....4444555566666666666666665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.063
                       AA_permease   4 vialggviGtglfvglgvvlsqaGplgallayllagvvi 42 
                                       + a+g +   g +vgl + l++a+p+  + ++++a++vi
  gi|300713098|ref|YP_003738910.1| 361 LPAIGCLGASGAIVGLLYHLATAEPAVFVTVLAIAIAVI 399
                                       334444334899999999999999965544444444443 PP

>> Spore_permease  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   8.6   5.1e-08   0.00031      12     236 ..       3     236 ..       1     275 [. 0.85
   2 ?   -2.6   0.2      0.31   1.9e+03     125     169 ..     319     362 ..     310     366 .. 0.55

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.1e-08
                    Spore_permease  12 vsfqlGvgiltlprsvaeqatpdgWisvllagiiililvllmlkllkkfpek.tliellkkilg.kwLGsllsilfi 86 
                                       +  ++G gi  ++++va +a+p +W++ +  g+i+  + + +l+l  +   + + i+++++  g + L+ + +  fi
  gi|300713098|ref|YP_003738910.1|   3 IGGMVGGGIFAVLGVVAVEAGPAAWLAFVASGVIAFCAGYSALRLNAQADGQlNPIAYVEQFTGsTTLAGMTGWTFI 79 
                                       5669*****************************************8876544499*********999********** PP

                    Spore_permease  87 lyFlllaafelRe....fseliqvflledtplw.iiilllllvilYlvvkGieslar.eflfiivilliilllillf 157
                                       + ++ +++  +      f+el+ v ++  +pl  +i+ll ++v++ l   G +   r e +++ + +li l++ l  
  gi|300713098|ref|YP_003738910.1|  80 AGYVGTMSLYAYAfggyFAELVGVESVVGLPLRsLITLLAIIVFVGLNLAGAHASGRtEDVLVGLKVLILLVFGLGG 156
                                       ******9998876222268************8526677778888888899999999988899999999999999999 PP

                    Spore_permease 158 slklaeiknlrPvlgngikpvlkslkttslsflgveillllvpflkdkkkvkkaallgvli.stllyllttlivilv 233
                                           ++   +r  lgn  ++ l ++    ++f g e+ll+    +++++++ + a++g ++  t ly+++ +++   
  gi|300713098|ref|YP_003738910.1| 157 LYYGFQQGMIRSGLGNLEVSALLAAAIGFVAFEGWELLLFDQNSIENPQQTIRKAIYGSIVgATALYVIVAVVTTNL 233
                                       9999999****999999999999999999********************9999999987773677888887777665 PP

                    Spore_permease 234 lsv 236
                                        s 
  gi|300713098|ref|YP_003738910.1| 234 VST 236
                                       554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.31
                    Spore_permease 125 ilYlvvkGieslareflfiivilliilllillfslklaeiknlrP 169
                                       +l+   ++++ ++  f+ + +i ++  l +l f  ++  +  l+P
  gi|300713098|ref|YP_003738910.1| 319 ALLSSLGSLNAIS-SFASLSFISIFGGLSLLAFLERESVVTALLP 362
                                       4444555566666.5555555555555566666555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2854.33
//
Query:       gi|300713099|ref|YP_003738911.1|  [L=288]
Description: thiosulfate sulfurtransferase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-29  101.9   0.0    2.4e-14   53.8   0.0    2.1  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.3e-18   2.4e-14      10     105 ..       4     103 ..       1     105 [. 0.84
   2 !   46.3   0.0   2.7e-16   4.8e-12       5      87 ..     137     233 ..     133     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.3e-18
                         Rhodanese  10 ekgkvallDvR.ppeeYekghIpgAvnv.skdtlsrakkseapllelpeellel.gidnkktvvvycdgggr.aaaa 82 
                                       ++++++ll v  +p  Ye+ hIpgA  v  ++ l +++  + p  + +e+l+ + gi++++tvv+y+d  +  aa a
  gi|300713099|ref|YP_003738911.1|   4 DDPSIRLLEVDiDPSNYEREHIPGASKVnWHTDLQDSTTFDVPTEAAFEDLAGElGITPDSTVVFYGDMMNWfAAHA 80 
                                       5666667777766777************55556677777788888888888888******************99999 PP

                         Rhodanese  83 aallkklGyknvsvldGGfkawk 105
                                       ++l++++G+ nvs+ldGG + w 
  gi|300713099|ref|YP_003738911.1|  81 YWLFTYYGHANVSLLDGGRDFWE 103
                                       ********999*******98885 PP

  == domain 2  score: 46.3 bits;  conditional E-value: 2.7e-16
                         Rhodanese   5 lkellekgkvallDvRppeeY..............ek.ghIpgAvnvskdtlsrakkseapllelpeellelgidnk 66 
                                       + + le+g   l+DvR+pee+              ++ ghIpgA n++++   +++   +  +el + ++e+gid +
  gi|300713099|ref|YP_003738911.1| 137 VMDALEQGT-TLVDVRTPEEFrgeilappgwnegvQRgGHIPGAYNIPWNQVVESTGCFKAEDELRAVYEEHGIDGN 212
                                       567777776.5*********9999999999999995559************************************** PP

                         Rhodanese  67 ktvvvycdgggraaaaaallk 87 
                                       + v++yc+ g+r+a ++   +
  gi|300713099|ref|YP_003738911.1| 213 EDVITYCRIGERSALTWFVST 233
                                       ************777776444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2205.37
//
Query:       gi|300713100|ref|YP_003738912.1|  [L=753]
Description: aminotransferase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-78  264.0   0.0    2.4e-78  263.6   0.0    1.1  1  Aminotran_3     Aminotransferase class-III
    1.9e-23   83.6   1.1    1.9e-23   83.6   1.1    1.8  2  APH             Phosphotransferase enzyme family
    0.00011   21.5   0.0    0.00038   19.7   0.0    1.8  1  Aminotran_1_2   Aminotransferase class I and II
  ------ inclusion threshold ------
      0.022   14.2   0.0      0.036   13.4   0.0    1.3  1  Pkinase         Protein kinase domain
       0.13   11.9   0.0       0.22   11.1   0.0    1.3  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.6   0.0   6.8e-82   2.4e-78      14     405 ..     357     745 ..     347     746 .. 0.91

  Alignments for each domain:
  == domain 1  score: 263.6 bits;  conditional E-value: 6.8e-82
                                       EEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEE CS
                       Aminotran_3  14 tkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkv 90 
                                         ++Gv+l d+ g+rylD++    v ++Gh + +v++a++ qa +l+  +   + +e ++ l+e ll+ +p ++d+v
  gi|300713100|ref|YP_003738912.1| 357 VAGDGVWLFDQSGQRYLDAYNN--VQIVGHGNADVAAAIAGQARTLTT-N-TRYLHEAVVSLSERLLATMPAEFDRV 429
                                       5689****************86..7899*****************954.4.68999********************* PP

                                       EEESSHHHHHHHHHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGG CS
                       Aminotran_3  91 flansGseAvetAlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeev 167
                                       +l+nsGseA+  A +la +       t+++  i  ++a+HG t ++  ++ +     ++ +p+  e v  + ++  +
  gi|300713100|ref|YP_003738912.1| 430 LLVNSGSEANDIAWRLATA------LTNREGAIVTEHAYHGITEATTRLSPE--DWPAEDQPTHVEAVPPPVDQSNH 498
                                       *******************......9******************99999888..33333344444444444444556 PP

                                       TB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTS.S CS
                       Aminotran_3 168 lkeneeeeaalleelealekkkkdevaAvivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTG.k 243
                                           +++ + ++e+l++le + + e+aA+++ p     G+ +++ e l+++ +  ++ + l+i+DEvq GfGrTG +
  gi|300713100|ref|YP_003738912.1| 499 HGRTADSAELITEALNSLE-TRDTELAAFLFDPLFTSTGILPPDTEQLRQMVDRVHEAGGLVIADEVQAGFGRTGsN 574
                                       6677789999999999998.8899***************************************************55 PP

                                       SSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS.B--TTTT-HHHHHHHHHHHHHHHHTTHHHHHHH CS
                       Aminotran_3 244 lfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs.hgsTfgGnplacavalavleiieeekllenaqe 319
                                       +++ + a++ pD++t++K +++G p++av+++ ++++al+++    sT+gGnp+  ++alavl+iiee++lle+a++
  gi|300713100|ref|YP_003738912.1| 575 MWGFQAADIVPDIVTMGKPMGNGHPVAAVVTRSNIVSALRDDPgIFSTYGGNPVSSVAALAVLNIIEENQLLEHADA 651
                                       9**************************************8765589******************************* PP

                                       HHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC........HHHHHHHHHCTEE-EEETT..TEEEE-- CS
                       Aminotran_3 320 lgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke........keilkkakekGvlilsaGd..nvirllp 386
                                       +g++l++gL +l+++y+ i+e+R+ Glmi++el+++ e  +        ++i+++++++ +li+s+G+  n+++++p
  gi|300713100|ref|YP_003738912.1| 652 VGKYLQTGLAQLSAEYDLIGEIRRSGLMIGVELVQDTE--PwtpattaaTDIVNRLRQHRILIGSTGKhgNILKIRP 726
                                       ***********************************999..4458999999******************9******** PP

                                       -TT--HHHHHHHHHHHHHH CS
                       Aminotran_3 387 pliitdeeidelleilkka 405
                                       pl++++ ++d ll++l  +
  gi|300713100|ref|YP_003738912.1| 727 PLVFKQSHADRLLDALDTV 745
                                       **************99876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   1.1   5.3e-27   1.9e-23       7     220 ..      21     240 ..      16     259 .. 0.83
   2 ?   -1.4   0.1      0.52   1.8e+03      55     131 ..     430     499 ..     375     534 .. 0.60

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 5.3e-27
                                       -.SSCEEEEEEETT-.-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-..B--B-C.......TTBS-EEETTEEEEE CS
                               APH   7 ggasnrtylvttpag.ryvlrrnpparaaeeirrevallrlLakagv..pvPevl.......agdtddeeigllfal 73 
                                       gg  ++++++ t  g r+vl++++ a+ +  + +  +  ++++++++  pv  ++       ++  ++++  +  +l
  gi|300713100|ref|YP_003738912.1|  21 GGERDQNFRIDTNCGnRFVLKIFNRADDPGVLDFRTQAIQHIQRTDLdlPVMNIVptldgdpWTSISENGDTYFGQL 97 
                                       567888******8856**********888888888899*********99999999888888888888888888**** PP

                                       EE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC..HHHHH CS
                               APH  74 ieyvpgrsllrklsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselld..lleel 148
                                       +++v g+ ++    a+ ++++l a ge +a+  q+    ++++++ aq+  l+ +++++  r++     d  +++ +
  gi|300713100|ref|YP_003738912.1|  98 YTFVSGQKASL---ADFDDDALFAYGESIARTGQA---LRGFFHPDAQYDILWDLRHASDFRSVLDTISDdrRRATA 168
                                       ***********...888888888888888887777...788888888866666666666446665555554556777 PP

                                       HHHHHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHC CS
                               APH 149 eeqvlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrswtseldpef 220
                                       e  vl+++++++++    l+++++H+Dl p+N+l+d d++rv+G+ Df+d+++   ++Dlav+l++ ++++++++
  gi|300713100|ref|YP_003738912.1| 169 EL-VLDRFDERVAPefeTLRAQVVHNDLGPDNVLFD-DNDRVSGITDFGDLTYTALVCDLAVVLTN-VMNRHDNP 240
                                       77.*********************************.99*************************66.55554444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.52
                                       -B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH..-STTTB-SHHCHTCCHHHHHH CS
                               APH  55 Pevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvd.paalpladflaqdlellrqle 130
                                         v  g + ++ +++l+ +++  +g+++++        +++  + e+  +l+  d pa++ +++ +a+ + +++  +
  gi|300713100|ref|YP_003738912.1| 430 LLVNSGSEANDIAWRLATALTNREGAIVTE--------HAYHGITEATTRLSPEDwPAEDQPTHVEAVPPPVDQSNH 498
                                       333343344444444444444444444444........555556666666666666666666666666655555544 PP

                                       C CS
                               APH 131 s 131
                                        
  gi|300713100|ref|YP_003738912.1| 499 H 499
                                       4 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-07   0.00038     134     270 ..     508     646 ..     375     672 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.1e-07
                                       HHHHHHTTHHCTTETEEEEEEESS-TTT--B--.HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTT CS
                     Aminotran_1_2 134 aleealkeapegnkktkvilvesphNPtGtvat.leeleklldlakkynlllfvDeaYagfvfgsldavatranvee 209
                                        + eal+++  ++ +   +l+   +  tG +++  e+l++++d +++ + l++ De+ agf  + + ++   +++++
  gi|300713100|ref|YP_003738912.1| 508 LITEALNSLETRDTELAAFLFDPLFTSTGILPPdTEQLRQMVDRVHEAGGLVIADEVQAGFGRTGSNMWG--FQAAD 582
                                       34577888888888999999999999***9975389****************************876655..44444 PP

                                       STTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS......SHHHHHHHHHHHHHHHHH CS
                     Aminotran_1_2 210 epnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls......ssllqaavaaalsdallk 270
                                        + +    +++K +G  G  v++++  +++vs+lr+    f        ss+++ av+++++  +l 
  gi|300713100|ref|YP_003738912.1| 583 IVPD--IVTMGKPMG-NGHPVAAVVTRSNIVSALRDDPGIFSTyggnpvSSVAALAVLNIIEENQLL 646
                                       4444..449******.5889***************87666555665555555555555555555544 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     1e-05     0.036     117     143 ..     188     215 ..     133     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1e-05
                                       TTEE-SS-SGGGEEEE.TTTEEEE-SGT CS
                           Pkinase 117 kgiiHrDlKpeNiLid.ekgelKitDFG 143
                                       ++++H Dl p+N+L+d ++++  itDFG
  gi|300713100|ref|YP_003738912.1| 188 AQVVHNDLGPDNVLFDdNDRVSGITDFG 215
                                       689*************7777799****9 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.2e-05      0.22     147     196 ..     190     239 ..     168     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.2e-05
                                       EE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHHHHHTTEEHHH CS
                    Choline_kinase 147 fcHnDlqegNillnkeekklvlIDFEYagynyrgfDlanhfiEwagdyee 196
                                         HnDl + N+l++++++   + DF   +y   + Dla ++ +++   ++
  gi|300713100|ref|YP_003738912.1| 190 VVHNDLGPDNVLFDDNDRVSGITDFGDLTYTALVCDLAVVLTNVMNRHDN 239
                                       46***********8888888899******************999985554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5542.87
//
Query:       gi|300713101|ref|YP_003738913.1|  [L=191]
Description: Cytidine/deoxycytidylate deaminase, zinc-binding region (TBD) [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-15   56.0   0.0    4.3e-15   55.7   0.0    1.1  1  MafB19-deam      MafB19-like deaminase
    6.5e-13   48.4   0.0    9.4e-13   47.9   0.0    1.2  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    0.00011   22.3   0.0    0.00017   21.6   0.0    1.2  1  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
    0.00057   20.0   0.0    0.00091   19.4   0.0    1.2  1  NAD1             Novel AID APOBEC clade 1
     0.0023   18.0   0.0     0.0029   17.7   0.0    1.2  1  APOBEC2          APOBEC2
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.018   15.1   0.0    1.2  1  NAD2             Novel AID APOBEC clade 2
      0.039   13.8   0.0      0.051   13.5   0.0    1.1  1  APOBEC_N         APOBEC-like N-terminal domain


Domain annotation for each model (and alignments):
>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   1.7e-18   4.3e-15       2     116 ..      47     160 ..      46     180 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.7e-18
                       MafB19-deam   2 dkekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvt 78 
                                       ++++ +r+  +++++at  ++++ g v v d+ +i + sn++ ++ + + H E +   +A+    + +   +++y+ 
  gi|300713101|ref|YP_003738913.1|  47 NHDEHMRETFELAQEATARGDKPFGSVLVRDDTIIMSDSNREITEDDIRRHPELHLAYRACREYDADERAAMVMYTS 123
                                       899************************************************************************** PP

                       MafB19-deam  79 lepCdmCagaivqaglkklvygagnpkslnkLkvkekn 116
                                         pC+mCa  ++ ag  ++vy +g  +++ + +  e++
  gi|300713101|ref|YP_003738913.1| 124 TGPCPMCASGMATAGFGRVVYSVG-SDGIAVFTGIEPT 160
                                       **********************99.7777766555555 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   3.7e-16   9.4e-13       4     100 ..      48     145 ..      46     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3.7e-16
                                       HHHHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCETTEEEEEEE CS
                   dCMP_cyt_deam_1   4 dekllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.ggsklegatlyvtl 79 
                                       + ++++   ++a+ea +    ++G+v+v+++ ii+   n+e ++ +   H E+  +  a+++    +    ++y+++
  gi|300713101|ref|YP_003738913.1|  48 HDEHMRETFELAQEATARGDKPFGSVLVRDDTIIMSDSNREITEDDIRRHPELHLAYRACREyDADERAAMVMYTST 124
                                       6789**********************************************************666677789****** PP

                                       --BHHHHHHHHHHT-SEEEEE CS
                   dCMP_cyt_deam_1  80 ePCsmCakaiiqsgikkvvvg 100
                                        PC+mCa  ++++g  +vv+ 
  gi|300713101|ref|YP_003738913.1| 125 GPCPMCASGMATAGFGRVVYS 145
                                       *******************96 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   6.8e-08   0.00017      16      61 ..      89     135 ..      77     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 6.8e-08
                             SNAD4  16 vlkn.kkehaEllflekikseldpsqeyrvtwylswsPCaeCaekia 61 
                                       + ++  ++h+El +  + + e+d++++  +++y+s+ PC+ Ca+ +a
  gi|300713101|ref|YP_003738913.1|  89 ITEDdIRRHPELHLAYRACREYDADERAAMVMYTSTGPCPMCASGMA 135
                                       44442344***********************************9887 PP

>> NAD1  Novel AID APOBEC clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.5e-07   0.00091      39      91 ..      86     136 ..      73     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.5e-07
                              NAD1  39 lkGvleneskcHaEllflnkikslklldpsqkykvtwylswSPCseCasklae 91 
                                       ++ ++e++ + H+El +   ++  + +d +++  +++y+s  PC+ Cas +a+
  gi|300713101|ref|YP_003738913.1|  86 NREITEDDIRRHPELHL--AYRACREYDADERAAMVMYTSTGPCPMCASGMAT 136
                                       45667777777*****9..4445666699*******************99975 PP

>> APOBEC2  APOBEC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.1e-06    0.0029      43      91 ..      90     136 ..      43     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.1e-06
                           APOBEC2  43 lenkekkcHaEllflskvkkkkleekkeykvtwyvswsPCaeCaeevae 91 
                                        e++  ++H+El +  + +  +++ +++  + +y+s  PC+ Ca+ +a+
  gi|300713101|ref|YP_003738913.1|  90 TEDD-IRRHPELHLAYRACR-EYDADERAAMVMYTSTGPCPMCASGMAT 136
                                       3444.778****99999988.999********************99886 PP

>> NAD2  Novel AID APOBEC clade 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   7.1e-06     0.018      44      94 ..      87     135 ..      35     139 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.1e-06
                              NAD2  44 gvllnqkesklhaellfLskfvlrqlelaqeykvtwyvsWsPCpeCaaeva 94 
                                         ++++ + + h+el   ++ + r+ +++++  + +y+s  PCp Ca+ +a
  gi|300713101|ref|YP_003738913.1|  87 REITED-DIRRHPELHLAYRAC-REYDADERAAMVMYTSTGPCPMCASGMA 135
                                       223333.7899****9999998.99**********************9887 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05     0.051      46      94 ..      81     136 ..      32     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
                                       S.............TBCHHHHHHHHHHHHT--.TTEEEEEEEEESS-S-HH....HHHHHHH CS
                          APOBEC_N  46 a.............skHaEelflediedqelrepkkkyeitlYvswsPChessdeCaeklaa 94 
                                                     ++H+E+ +  + +  e +  +++    +Y+s+ PC+     Ca+ +a+
  gi|300713101|ref|YP_003738913.1|  81 ImsdsnreiteddiRRHPELHLAYRAC-REYD-ADERAAMVMYTSTGPCPM----CASGMAT 136
                                       2455566666777799*****877644.4444.578999************....*998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1403.75
//
Query:       gi|300713102|ref|YP_003738914.1|  [L=254]
Description: hypothetical protein HacjB3_18918 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-13   48.8  38.4    8.3e-13   48.5  38.4    1.1  1  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5  38.4   4.6e-17   8.3e-13       4     235 ..      19     247 ..      15     248 .. 0.68

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 4.6e-17
                              TauE   4 agllaGfvagllGiGggliavPlLllllppavavatsllavvatslsgalahrrrgnvdw...rlllllllgsliGa 77 
                                       + +laGf++g lG+G gl++  lLl l+p++ ++++ +l ++++ ++ +++      + w   r+   ++l  ++Ga
  gi|300713102|ref|YP_003738914.1|  19 ILVLAGFIKGTLGFGVGLVSATLLLQLFPAKPTLMILVLPIGLSEVGLLVTTG----ISWrflRAHAAFFLLLIPGA 91 
                                       6789******************9998888776666666666666665555543....44400144456888889999 PP

                              TauE  78 llGallllllpsellkllfgvlllllallmllrkkrsrakgrerrptaillvligglvGllsGllGiGgGfllvpll 154
                                       +lG+l ll++++++l ++++ +++++ ++  +++         r+ + +  +  g++ G+++G+lG+G G+ ++p++
  gi|300713102|ref|YP_003738914.1|  92 ILGVLGLLVVSTTALYTVLSGYIIVFLVMQRYES---------RAYNFVQRPGYGIASGVATGILGGGFGAAGPPAV 159
                                       9999999999887766666666555544442222.........3344444444545577777777777777777777 PP

                              TauE 155 llll....glplkkavatslllilvislagalgyalagavdwpllll...llpgallGallGarlarrlsertlrrl 224
                                        +l+     +p  ++v  ++++++v  ++ + ++++ag + ++ ++l   +++ +l G  lG+ ++ ++++  +  +
  gi|300713102|ref|YP_003738914.1| 160 PYLYlhtrDQPRSVFVSGMAAAFVVPQIVRLPALIVAGRFGVRKFILggvAAILVLTGLALGSCFRPHIPNDIFEVV 236
                                       776666433333335555566777778888888888777775533333449999*********************** PP

                              TauE 225 fallllvlgvk 235
                                       + ++ll+++ +
  gi|300713102|ref|YP_003738914.1| 237 VKGVLLLMAGQ 247
                                       *******9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1693.95
//
Query:       gi|300713103|ref|YP_003738915.1|  [L=125]
Description: small multidrug resistance protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-23   82.5   3.5    3.6e-23   82.0   3.5    1.2  1  Multi_Drug_Res  Small Multidrug Resistance protein


Domain annotation for each model (and alignments):
>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   3.5     2e-27   3.6e-23       7      93 .]       5      91 ..       1      91 [. 0.97

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2e-27
                                      HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------- CS
                    Multi_Drug_Res  7 vlAillevvgailLklsegftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslk 85
                                      ++A+l+e+++ai L +s+g+++  p+++++v+++is++lL+k ++ lp++++Yavw+GiG+v+++ +gi++f+e++  +
  gi|300713103|ref|YP_003738915.1|  5 FVAGLFEIAWAIGLEYSDGLSEPLPTVGTVVALIISMVLLAKVVQDLPIGTVYAVWTGIGAVGTASLGIIIFDEPATSA 83
                                      79***************************************************************************** PP

                                      -HHHHHHH CS
                    Multi_Drug_Res 86 kliglali 93
                                      +l+++ +i
  gi|300713103|ref|YP_003738915.1| 84 RLLFISVI 91
                                      ***99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 920.90
//
Query:       gi|300713104|ref|YP_003738916.1|  [L=144]
Description: hypothetical protein HacjB3_18928 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-07   31.4   1.2    1.2e-06   29.1   1.2    1.9  1  DUF488    Protein of unknown function, DUF488


Domain annotation for each model (and alignments):
>> DUF488  Protein of unknown function, DUF488
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   1.2   6.6e-11   1.2e-06      71     121 ..      86     139 ..      41     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 6.6e-11
                            DUF488  71 efferYaaeleskeaakealeelkelakkg..vaLlcaekd.perchrvvlaey 121
                                        f +rY+ +l + ++a++a++el + ++++  ++L+c+e   ++rchr +l+e 
  gi|300713104|ref|YP_003738916.1|  86 GFEDRYQTHLTEAPNAQDAVAELTDRLRNEehLVLVCFENTsQKRCHRTLLREH 139
                                       699*********78999**********9999*******9862578******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1109.81
//
Query:       gi|300713105|ref|YP_003738917.1|  [L=90]
Description: transcriptional regulator, HxlR family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-17   62.8   0.0    2.2e-17   62.7   0.0    1.0  1  HxlR      HxlR-like helix-turn-helix
    2.9e-05   24.2   0.0    3.3e-05   24.0   0.0    1.1  1  HTH_34    Winged helix DNA-binding domain
    0.00046   20.1   0.0    0.00071   19.5   0.0    1.3  1  PadR      Transcriptional regulator PadR-like family
      0.002   18.1   0.0     0.0056   16.7   0.0    1.7  1  HTH_20    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.023   14.7   0.0    1.2  1  HTH_45    Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   6.1e-21   2.2e-17       2      87 ..       2      88 ..       1      90 [] 0.93

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 6.1e-21
                                      HHSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEE.ESSSS-EEEEEE-TCGGGGHHHHHHH CS
                              HxlR  2 iggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierev.ypevPpkveYsltekGrslepvlqel 79
                                      +g kW+  il+ l +    f+++k+ + +++ ++L++rL++L++  ++ r+v    +Pp v Y ltekG++l++++ ++
  gi|300713105|ref|YP_003738917.1|  2 LGCKWTFHILRLLACDDVQFNQIKNSIDGLPASTLSTRLKNLQEVDVVVRTVdEAATPPTVSYALTEKGTELAEIIMQI 80
                                      799*****************************************9999998824679********************** PP

                                      HHHHHHHH CS
                              HxlR 80 kkwgeeyl 87
                                      +++ ++y+
  gi|300713105|ref|YP_003738917.1| 81 EELERRYA 88
                                      *9998886 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.3e-09   3.3e-05       7      71 ..      12      76 ..       7      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.3e-09
                            HTH_34  7 syLasvdeadfvelkeal.eatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkk 71
                                        L++ d ++f+++k+++ ++ ++ Ls+ lk L++ + ++++ +     p  ++ +T++G e ++ 
  gi|300713105|ref|YP_003738917.1| 12 R-LLACDDVQFNQIKNSIdGLPASTLSTRLKNLQEVDVVVRTVDEAATPPTVSYALTEKGTELAEI 76
                                      3.556788**********5599**************************************998764 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     2e-07   0.00071      18      71 ..      23      72 ..      21      76 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2e-07
                                      HHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCH CS
                              PadR 18 eleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrr 71
                                      +++++++g   l +++l + Lk L++ ++v+++ +e + +pp+  Y+lT++G +
  gi|300713105|ref|YP_003738917.1| 23 QIKNSIDG---LPASTLSTRLKNLQEVDVVVRTVDE-AATPPTVSYALTEKGTE 72
                                      56666666...67899999**************998.69*************86 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06    0.0056      15      58 ..      10      54 ..       8      57 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
                                      HHHHHSTCTTB-HHHHHHHH.TS-HHHHHHHHHHHHHCTT.EEEEC CS
                            HTH_20 15 ilraLaraegltaselaerl.dlskntlsyHLrvLeeagL.vevvr 58
                                      ilr+L   + + +++++  + +l+ +tls +L+ L+e++  v++v+
  gi|300713105|ref|YP_003738917.1| 10 ILRLL-ACDDVQFNQIKNSIdGLPASTLSTRLKNLQEVDVvVRTVD 54
                                      66666.5555667888888956******************555555 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.4e-06     0.023      35      76 ..      35      84 ..       9      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.4e-06
                            HTH_45 35 llnkYLdmLvekgli........kkskekYvlTekGlelleklkeleela 76
                                      +l+  L+ L+e +++        +  + +Y lTekG el e + ++eel+
  gi|300713105|ref|YP_003738917.1| 35 TLSTRLKNLQEVDVVvrtvdeaaTPPTVSYALTEKGTELAEIIMQIEELE 84
                                      5666677777777777777766566889*************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 712.41
//
Query:       gi|300713106|ref|YP_003738918.1|  [L=196]
Description: hypothetical protein HacjB3_18938 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-38  131.8   0.3    2.3e-38  131.6   0.3    1.0  1  Protoglobin  Protoglobin


Domain annotation for each model (and alignments):
>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.3   1.3e-42   2.3e-38       2     157 ..      23     195 ..      22     196 .] 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 1.3e-42
                                       GHHHHHHHHHTT-SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSHHHHHHHCH......HCHHHHHHHHHHHHHH CS
                       Protoglobin   2 earlayllsflglteedlaaLralapliealipavvdafYekllsfpetarifet......ssqierlkdflksyll 72 
                                       ++++++l++ +++teed+++L+++++++e +i++++d +Y  +++++ ++++f++      +++++r++d++ ++++
  gi|300713106|ref|YP_003738918.1|  23 MEEFEQLKQSVMFTEEDEEYLQEAGDILESQIDDILDVWYGFVADHDFLVYYFSQpdgepiDEYLDRVRDRFGQWIR 99 
                                       5899************************************************************************* PP

                                       HCCCSSCCHHHHHHHHHHHHHHC............HCT--HHHHHHCHHHHHHHHHHHHCCCS.-SHHHHHHHHHHH CS
                       Protoglobin  73 klfsgpfdsayveyldkvGkmht............rlgleprwyiaalglvqevlleallekeklsaaektalvkal 137
                                       ++++ p+d+a+++y+ +++++h+              ++++r++ia+++++++++ e+l + e ++ +++ a++ a+
  gi|300713106|ref|YP_003738918.1| 100 DTCDTPYDEAWLDYQFEIARRHHrtkknqtddvdaVPNIDLRYVIAFIYPITATIREFLDDGE-HDSDKVDAMYHAW 175
                                       ***********************************************************9999.************* PP

                                       HHHHHHHHHHHCGGGBXTTX CS
                       Protoglobin 138 nKliwldndlaleaYvrege 157
                                       +K ++l+++l++ +Yv++g+
  gi|300713106|ref|YP_003738918.1| 176 FKSVVLQVTLWSYPYVHDGD 195
                                       *****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1548.10
//
Query:       gi|300713107|ref|YP_003738919.1|  [L=311]
Description: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-51  174.0   0.0    2.5e-51  173.6   0.0    1.2  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    1.4e-06   28.0   0.0    1.8e-06   27.7   0.0    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    1.4e-05   25.6   0.0    2.7e-05   24.7   0.0    1.6  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.024   14.8   0.0    1.6  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
      0.017   15.0   0.0       0.11   12.4   0.0    2.1  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.039   14.0   0.1      0.087   12.9   0.1    1.6  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
      0.056   13.9   0.0        0.1   13.1   0.0    1.4  1  NAD_binding_7  Putative NAD(P)-binding
        0.1   12.0   0.0       0.17   11.2   0.0    1.3  1  ThiF           ThiF family


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.6   0.0   1.1e-54   2.5e-51       2     178 .]     104     279 ..     103     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 173.6 bits;  conditional E-value: 1.1e-54
                                       HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHH CS
                      2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeel 78 
                                       +++l+++rrl  a +++ ++ew+ ++    ++l++++ +i+GlG +G+ + k ++a+g++vi++ rs ++ +   ++
  gi|300713107|ref|YP_003738919.1| 104 GYMLSFARRLLPAVKSQTQREWSPPTWDDAYTLADERCCIVGLGTLGRGIVKQASALGLDVIGVRRSGESLN-GVRT 179
                                       689*******************9999999**************************************99777.5555 PP

                                       TCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--S CS
                      2-Hacid_dh_C  79 gvelvsleellaesDivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfe 155
                                        ++ ++l+++++es +v+l++pl +et+hl++ ee+a+m+++ailiN+aRG++vd++aL++aL++g i+gaalDvfe
  gi|300713107|ref|YP_003738919.1| 180 VYTPDDLHTAIRESKFVVLAVPLVDETHHLMSTEEFAAMRDDAILINVARGPVVDQDALVDALEAGIIGGAALDVFE 256
                                       7799************************************************************************* PP

                                       SSSSGTCHHHHHSTTEEE-SS-T CS
                      2-Hacid_dh_C 156 eeplpedspllelpnviltPHia 178
                                        eplp+dspl+++++v++tPH+a
  gi|300713107|ref|YP_003738919.1| 257 AEPLPKDSPLWDFEEVLITPHCA 279
                                       *********************97 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0     8e-10   1.8e-06      59     132 ..      59     309 ..      15     311 .] 0.96

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 8e-10
                                       HTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH................................. CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
                        2-Hacid_dh  59 lpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt................................. 102
                                       l+++ +i+ + +GvD + +d ++e+ +++tn  g +  +v E++                                 
  gi|300713107|ref|YP_003738919.1|  59 LEGVYWIHSIQAGVDRFPFDELREHEVILTNSSGIHGSAVGETVagymlsfarrllpavksqtqrewspptwddayt 135
                                       578999*********************************************************************** PP

                                       ............................................................................. CS
                                       ............................................................................. RF
                        2-Hacid_dh 103 ............................................................................. 102
                                                                                                                    
  gi|300713107|ref|YP_003738919.1| 136 laderccivglgtlgrgivkqasalgldvigvrrsgeslngvrtvytpddlhtaireskfvvlavplvdethhlmst 212
                                       ***************************************************************************** PP

                                       ...................................................................T-BHHHHHHH CS
                                       ...................................................................xxxxxxxxxx RF
                        2-Hacid_dh 103 ...................................................................aaTeeaqeni 112
                                                                                                          ++Te+ ++n+
  gi|300713107|ref|YP_003738919.1| 213 eefaamrddailinvargpvvdqdalvdaleagiiggaaldvfeaeplpkdsplwdfeevlitphcaGFTEDYYRNV 289
                                       ***************************************************************************** PP

                                       HHHHHHHHHHHHTTCCGTTB CS
                                       xxxxxxxxxxxxxxxxxxxx RF
                        2-Hacid_dh 113 aeeaaenlvaflkgespana 132
                                       a+ + enlv + +ge++ n 
  gi|300713107|ref|YP_003738919.1| 290 ADLVRENLVHIDAGEELINK 309
                                       ***********999998886 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.2e-08   2.7e-05       3      93 ..     142     226 ..     140     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.2e-08
                                       EEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHH CS
                     F420_oxidored   3 giiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevls 79 
                                       +i+G G +g++++++++a g    +++ + +r+ e+++  +  +    t+ d  +a++e+++vvlav+  d +  l 
  gi|300713107|ref|YP_003738919.1| 142 CIVGLGTLGRGIVKQASALG---LDVI-GVRRSGESLNGVRTVY----TPDDLHTAIRESKFVVLAVPLVDETHHLM 210
                                       799*****************...****.98**********9998....577899**************977555444 PP

                                       HC..GHHHHTTSEEEE CS
                     F420_oxidored  80 el..akdalkgklvis 93 
                                       +   +++   + ++i 
  gi|300713107|ref|YP_003738919.1| 211 STeeFAAMRDDAILIN 226
                                       4434455555556555 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.1e-05     0.024       3     104 ..     142     242 ..     140     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
                                       EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCC CS
                     NAD_binding_2   3 gfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.lle 78 
                                        ++GlG++G+ ++++  + g +v+++ r+ e+++ +    + + +++  ++++ ++v++ v+  +++ ++++   ++
  gi|300713107|ref|YP_003738919.1| 142 CIVGLGTLGRGIVKQASALGLDVIGVRRSGESLNGVR--TVYTPDDLHTAIRESKFVVLAVPLVDETHHLMSTeEFA 216
                                       689**************************98887665..455566677777777***************99988899 PP

                                       C--TT-EEEE-S---HHHHHHHHHHH CS
                     NAD_binding_2  79 alkkgdilidgstsspedtrelakel 104
                                       a++ ++ili+++   + d+  l ++l
  gi|300713107|ref|YP_003738919.1| 217 AMRDDAILINVARGPVVDQDALVDAL 242
                                       99999999998776666666665555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.33   7.3e+02     105     125 ..      81     101 ..      77     105 .. 0.81
   2 ?   12.4   0.0   4.7e-05      0.11       3      40 ..     142     179 ..     140     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
                                       -TTSEEEE--SSS-HHHHCCC CS
                           3HCDH_N 105 kpdailasnTSslsiselaea 125
                                       +++ ++ +n+S++  s++ e+
  gi|300713107|ref|YP_003738919.1|  81 REHEVILTNSSGIHGSAVGET 101
                                       688999*******98877665 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.7e-05
                                       EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
                           3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdiseealekale 40 
                                        ++G Gt+G+gi +++ + gl+V  v +s e+l+ ++ 
  gi|300713107|ref|YP_003738919.1| 142 CIVGLGTLGRGIVKQASALGLDVIGVRRSGESLNGVRT 179
                                       59************************999999987765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.9e-05     0.087      21     110 ..     136     228 ..     131     246 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.9e-05
                                       -TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-S....SSSSSB- CS
                     AdoHcyase_NAD  21 laGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvttt....Gnkdiit 93 
                                       la   ++++G G +G+G  +   +lG  vi        +l  +   +    l+++++++++vv +      ++ +++
  gi|300713107|ref|YP_003738919.1| 136 LADERCCIVGLGTLGRGIVKQASALGLDVIGVR-RSGESLNGVRTVYTPDDLHTAIRESKFVVLAVplvdETHHLMS 211
                                       677899********************9997554.45578999999999**************998722224567999 PP

                                       HHHHCCS-TTEEEEE-S CS
                     AdoHcyase_NAD  94 lehlkkmkddaivcniG 110
                                       +e++++m+ddai+ n+ 
  gi|300713107|ref|YP_003738919.1| 212 TEEFAAMRDDAILINVA 228
                                       ***************96 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.5e-05       0.1       4      93 ..     135     229 ..     133     235 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.5e-05
                     NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvk.laeeelekdlegadlviaatddrelneria 79 
                                        l ++++++vG G+++   v++  + g +v+ v     e l++  + +++++l+  + + ++v+ a++  ++ ++++
  gi|300713107|ref|YP_003738919.1| 135 TLADERCCIVGLGTLGRGIVKQASALGLDVIGVRRS-GESLNGVRTvYTPDDLHTAIRESKFVVLAVPLVDETHHLM 210
                                       5789***************************99999.455566555468999*999**9999999999988888887 PP

                     NAD_binding_7  80 e.....aakarrilvnvad 93 
                                             a+++  il+nva 
  gi|300713107|ref|YP_003738919.1| 211 SteefaAMRDDAILINVAR 229
                                       7566645588999999986 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.7e-05      0.17      11      45 ..     131     165 ..     121     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.7e-05
                                       HHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEE CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                              ThiF  11 dgqekLrdskvllvGaGglGsellknLalsGvgkl 45 
                                       d++  L+d ++++vG+G+lG  ++k+  ++G+  +
  gi|300713107|ref|YP_003738919.1| 131 DDAYTLADERCCIVGLGTLGRGIVKQASALGLDVI 165
                                       566789*******************9999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2255.04
//
Query:       gi|300713108|ref|YP_003738920.1|  [L=66]
Description: hypothetical protein HacjB3_18948 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 480.22
//
Query:       gi|300713109|ref|YP_003738921.1|  [L=352]
Description: hypothetical protein HacjB3_18953 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2637.57
//
Query:       gi|300713110|ref|YP_003738922.1|  [L=205]
Description: hypothetical protein HacjB3_18958 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00079   19.6   0.0     0.0011   19.1   0.0    1.2  1  DUF3426      Protein of unknown function (DUF3426)
     0.0037   17.0   0.0     0.0061   16.3   0.0    1.3  1  TAT_signal   TAT (twin-arginine translocation) pathway signal
  ------ inclusion threshold ------
      0.044   13.8   0.0      0.088   12.8   0.0    1.5  1  DUF2393      Protein of unknown function (DUF2393)
       0.33   10.1   1.5       0.38    9.9   1.5    1.1  1  Zip          ZIP Zinc transporter
       0.38    9.5   3.2       0.43    9.3   3.2    1.1  1  Presenilin   Presenilin


Domain annotation for each model (and alignments):
>> DUF3426  Protein of unknown function (DUF3426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.1e-07    0.0011      47     114 ..     110     175 ..     101     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.1e-07
                           DUF3426  47 rdielisiessslrekageanlvlegtlrNradkpqalpaleltLtDaqgqvvarrvlspaeyllanq 114
                                       rd +++ i++ + ++ +g   l ++gt++N +d++  ++ +el +++++++ +    ++ +++ +a+ 
  gi|300713110|ref|YP_003738922.1| 110 RDPSDVEITADAQQATDGS--LLVSGTITNVSDRAIDVVDIELVFYGTNDAYLSATLVTVRDLGPAES 175
                                       5555555555555444443..7****************************999888777777755554 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.7e-06    0.0061       1      23 [.       1      23 [.       1      25 [. 0.95

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.7e-06
                        TAT_signal  1 klSRRdFLKgsAAaaAAaalggc 23
                                      ++SRR+F K  +  +  a l gc
  gi|300713110|ref|YP_003738922.1|  1 MISRRHFVKFLGSMGTVASLSGC 23
                                      69********************9 PP

>> DUF2393  Protein of unknown function (DUF2393)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05     0.088      48      88 ..     114     154 ..     107     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
                           DUF2393  48 eltilsqkrllyteafvvdgtitNeGkftikeCkleiklvn 88 
                                       +++i+  ++   + +++v+gtitN ++++i  + +e+ ++ 
  gi|300713110|ref|YP_003738922.1| 114 DVEITADAQQATDGSLLVSGTITNVSDRAIDVVDIELVFYG 154
                                       566777777778889*********************99985 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.5   0.00011      0.38     100     168 ..      29      97 ..       7     140 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
                               Zip 100 vekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqekseseke 168
                                        e +++++++t ++ ++s+++  a++++++d+++++   ++++ e+  +++++ +++ ++  ++ +++e
  gi|300713110|ref|YP_003738922.1|  29 WEDDDDADRPTGGTDTESQENTTAEDTAESDNTSDTDSERKNANETIDEDNTDRQQHPDENATQINRDE 97 
                                       333788888888888888888888888888888888877666555555555444444444333333333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.2   0.00012      0.43     240     295 ..      45     100 ..      21     154 .. 0.44

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00012
                        Presenilin 240 eaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekes 295
                                       e++++++++++++++++s+++s++k+a+++ +e++++++++++e++++ +++e ++
  gi|300713110|ref|YP_003738922.1|  45 ESQENTTAEDTAESDNTSDTDSERKNANETIDEDNTDRQQHPDENATQINRDEYDE 100
                                       11111111111111111111122222222222222222222222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1554  (0.0866752); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1474.82
//
Query:       gi|300713111|ref|YP_003738923.1|  [L=80]
Description: hypothetical protein HacjB3_18963 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 593.59
//
Query:       gi|300713112|ref|YP_003738924.1|  [L=74]
Description: hypothetical protein HacjB3_18968 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 538.41
//
Query:       gi|300713113|ref|YP_003738925.1|  [L=125]
Description: hypothetical protein HacjB3_18973 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          2    8.6   6.8       0.15   12.3   1.2    1.8  2  DUF3493    Low psii accumulation1 / Rep27
        7.5    6.5  14.1       0.74    9.8   9.3    1.8  2  Promethin  Promethin


Domain annotation for each model (and alignments):
>> DUF3493  Low psii accumulation1 / Rep27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2   1.7e-05      0.15      26      74 ..      15      65 ..      12      68 .. 0.87
   2 ?   -1.1   0.4      0.25   2.3e+03      38      44 ..      90      96 ..      74     118 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
                           DUF3493 26 faaSaliGalifllrllaaragaesa..peleealenlaiqvgavalfvfL 74
                                      +aa+ +iG+l++++ + aa ++  ++   +l  ++e + i+ g ++lf ++
  gi|300713113|ref|YP_003738925.1| 15 LAAGTAIGLLVIIASTPAAAQEFCDDpaGQLLISIETMLINYGTMLLFLAF 65
                                      68999***********999999888866799999***********999765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.25
                           DUF3493 38 llrllaa 44
                                      ll + aa
  gi|300713113|ref|YP_003738925.1| 90 LLSFGAA 96
                                      3333322 PP

>> Promethin  Promethin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       0.5   4.5e+03      68      73 ..      19      24 ..      10      33 .. 0.47
   2 ?    9.8   9.3   8.2e-05      0.74      48      95 ..      45      92 ..      42     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.5
                         Promethin 68 fvvgva 73
                                      +++g+ 
  gi|300713113|ref|YP_003738925.1| 19 TAIGLL 24
                                      222222 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 8.2e-05
                         Promethin 48 ltfalstllfalvgallfelfvvgvallvLvpvLfitsflallvwlwa 95
                                      l++++ t+l+   ++llf +f++gva+  L p+ ++ s ++l + l  
  gi|300713113|ref|YP_003738925.1| 45 LLISIETMLINYGTMLLFLAFLIGVAMWALTPIFAGQSAIGLGMILLS 92
                                      578999********************************9999887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 918.12
//
Query:       gi|300713114|ref|YP_003738926.1|  [L=543]
Description: hypothetical protein HacjB3_18978 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3974.50
//
Query:       gi|300713115|ref|YP_003738927.1|  [L=1092]
Description: conjugation protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   22.3   5.4    0.00031   20.9   0.0    2.7  3  DUF87      Helicase HerA, central domain
  ------ inclusion threshold ------
      0.063   13.7   0.2        1.7    9.1   0.0    2.5  2  AAA        ATPase family associated with various cellular act
       0.13   11.2   0.1       0.36    9.7   0.1    1.7  2  AAA_10     AAA-like domain
       0.14   12.7   0.3       0.63   10.6   0.0    2.2  3  DUF1374    Protein of unknown function (DUF1374)
       0.95    7.6   6.6       0.58    8.3   1.3    2.1  2  EzrA       Septation ring formation regulator, EzrA
        1.7    9.1   3.7         25    5.3   0.6    3.6  3  FlaC_arch  Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       4.3   1.3e+04     164     191 ..     235     262 ..     220     266 .. 0.69
   2 ?    2.9   0.7     0.033     1e+02      95     182 ..     471     556 ..     447     569 .. 0.82
   3 !   20.9   0.0   1.1e-07   0.00031      11      68 ..     616     676 ..     607     713 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.3
                             DUF87 164 aiarlldkledllrkggsfsnsstdlia 191
                                         +rl++kle l ++ +++ + st++++
  gi|300713115|ref|YP_003738927.1| 235 MVERLENKLETLESDLRTIEDISTRILS 262
                                       4567888888888888888666666554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.033
                             DUF87  95 wsldpeelldllee.ddkpaaavqrsvleealdqakakeekeklssdepveklleelkkekeelrklknqaiarlld 170
                                       ++++  + +d l+  ++k++ +++  +l+ + +q++  e +e + +++  e+ l e++ ++ elr+++ +a  r +d
  gi|300713115|ref|YP_003738927.1| 471 AEIELSDTEDQLKDkKEKAEDSRLPMFLQTYRKQHD--EAQEMVAANQDSEYDLFETN-THIELRSDDPEALGRTID 544
                                       678899999999997777777779999999999999..88888888888888888888.788*************** PP

                             DUF87 171 kledllrkggsf 182
                                       +++++++++g  
  gi|300713115|ref|YP_003738927.1| 545 HINSMMNDEGAE 556
                                       *******99887 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 1.1e-07
                             DUF87  11 evpvyldl.nklvtrHlAilgsTGsGKSntvavLleelle..kkgatililDpHGEYgkal 68 
                                       + p+yldl n+     ++i+ + G GK++t+  +l +l    ++++ ++i+Dp  EY+++ 
  gi|300713115|ref|YP_003738927.1| 616 NEPLYLDLwNRKTGFDFGIFTKKGGGKTTTATEILGRLNTvyRDDLMTIIIDPLQEYANLA 676
                                       4588888888888889******************************************998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.1     3e+02       6      23 ..     637     654 ..     633     673 .. 0.83
   2 ?    9.1   0.0   0.00058       1.7      25      74 ..     850     901 ..     837     914 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.1
                                       STTSSHHHHHHHHHHHHT CS
                               AAA   6 ppGtGKTllakavakelg 23 
                                        +G GKT++a  +   l+
  gi|300713115|ref|YP_003738927.1| 637 KKGGGKTTTATEILGRLN 654
                                       6899*********99886 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00058
                                       EEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHH CS
                               AAA  25 efleisgsell.skyvgesekkirelfkeakeka.kpsilfiDEidalaksr 74 
                                       +f+ +++ +   s  +g +++ + +lf e+ +    ps++f+DE++ + +++
  gi|300713115|ref|YP_003738927.1| 850 TFFYVDMQQQEaSTSIGLTMQVVYDLFYEMVKTIdIPSVIFMDEFHYMLRDS 901
                                       4566666666556789999999999999864444478***********9988 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.88   2.6e+03     149     181 ..     448     479 ..     425     488 .. 0.78
   2 ?    9.7   0.1   0.00012      0.36     235     294 ..     880     939 ..     849     960 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.88
                            AAA_10 149 lrkedekvareiarhlesvvkkslaklvfsdgs 181
                                       lr++++ va ++a h+ + ++++ a++ +sd++
  gi|300713115|ref|YP_003738927.1| 448 LREHEPGVAVNVATHI-NPIDQQRAEIELSDTE 479
                                       5899999*********.5667788999999886 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00012
                            AAA_10 235 ssdkkefkvvifDEawiftssaeGkkllkelvRiGRsynaavylvtqsadDvlkeelknn 294
                                        +  ++  v+++DE  ++   +  +k l++  R GR     +  +tqs++D   e+  +n
  gi|300713115|ref|YP_003738927.1| 880 VKTIDIPSVIFMDEFHYMLRDSLAQKSLNQKFRHGRHWDLSLGVATQSFKDFFGEDADGN 939
                                       356678899********9999999999************************977775554 PP

>> DUF1374  Protein of unknown function (DUF1374)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00021      0.63      34      63 ..     399     428 ..     388     433 .. 0.88
   2 ?   -3.7   0.0         6   1.8e+04      38      62 ..     648     672 ..     646     678 .. 0.78
   3 ?   -3.0   0.0       3.7   1.1e+04      53      63 ..     888     898 ..     856     907 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
                                       HHHHHCC-S-SEEEEEECTTEEEEEEEEE- CS
                           DUF1374  34 nefeeligkpdssnsvknnnilideyvYde 63 
                                       + ++ ++g  ds ++ ++n+i+id+ vY +
  gi|300713115|ref|YP_003738927.1| 399 DHYQTVVGPKDSIYRGNENWITIDNAVYSK 428
                                       5799*********************99986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6
                                       HCC-S-SEEEEEECTTEEEEEEEEE CS
                           DUF1374  38 eligkpdssnsvknnnilideyvYd 62 
                                       e++g+ +  ++++   i+id  + +
  gi|300713115|ref|YP_003738927.1| 648 EILGRLNTVYRDDLMTIIIDPLQEY 672
                                       8999999999999999999976544 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.7
                                       TEEEEEEEEE- CS
                           DUF1374  53 nilideyvYde 63 
                                        i++de+ Y  
  gi|300713115|ref|YP_003738927.1| 888 VIFMDEFHYML 898
                                       46777777765 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3     0.017        52     451     497 ..     220     266 ..     218     282 .. 0.79
   2 ?    8.3   1.3    0.0002      0.58     408     455 ..     467     514 ..     464     518 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.017
                                       TTTHHHHHHHT-TT--HHHHHHHHHTTTTTSGGGTHHHHHHHHHHHH CS
                              EzrA 451 deieelakeLekkpinikevnkrldeardlveklyektneliktAtl 497
                                       +e+++l++e ++ ++ +++++++l++ ++++ ++++ ++ ++ + +l
  gi|300713115|ref|YP_003738927.1| 220 KELRDLRQEGDHTQVMVERLENKLETLESDLRTIEDISTRILSSTEL 266
                                       57788888888888888888888888888888888888888777665 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0002
                                       HHHHHHHHHHHHHHHHHHHHHHSSS-SS-S-TTTHHHHSTTTSTTTHH CS
                              EzrA 408 dEkrAreqldeikkelkeikrkieksnLPgiPesyleelkeasdeiee 455
                                       d +rA+ +l++ + +lk+ k k e+s+LP+  ++y ++ +ea++++ +
  gi|300713115|ref|YP_003738927.1| 467 DQQRAEIELSDTEDQLKDKKEKAEDSRLPMFLQTYRKQHDEAQEMVAA 514
                                       789*****************************************9875 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4     4e+03      38      52 ..     169     183 ..     163     186 .. 0.77
   2 ?    5.3   0.6    0.0085        25       2      21 ..     236     255 ..     235     266 .. 0.84
   3 ?    2.0   0.0     0.093   2.8e+02      16      39 ..     365     389 ..     359     404 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                         FlaC_arch  38 kdllsLYEvVsnqvN 52 
                                       + +++LY+v + + N
  gi|300713115|ref|YP_003738927.1| 169 QGVIDLYDVTTLKRN 183
                                       569*****9886655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0085
                         FlaC_arch   2 idelEnklsklsteletvkk 21 
                                       ++ lEnkl+ l++ l t+++
  gi|300713115|ref|YP_003738927.1| 236 VERLENKLETLESDLRTIED 255
                                       789*************9997 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.093
                         FlaC_arch  16 letvkkeneelsksveelken.Vkd 39 
                                       ++t+k++ ++  + v ++++n V d
  gi|300713115|ref|YP_003738927.1| 365 VNTAKSTASSFADRVAKINDNpVAD 389
                                       89******************94444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 7502.83
//
Query:       gi|300713116|ref|YP_003738928.1|  [L=202]
Description: hypothetical protein HacjB3_18998 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.029   14.6   2.5      0.045   14.1   0.5    2.2  2  BLOC1_2       Biogenesis of lysosome-related organelles compl
      0.075   13.5   1.3       0.14   12.7   0.4    2.0  2  NPV_P10       Nucleopolyhedrovirus P10 protein
       0.08   13.0   0.1       0.21   11.7   0.1    1.7  1  Rv2175c_C     Rv2175c C-terminal domain of unknown function
       0.14   12.5   0.3       0.14   12.5   0.3    2.2  2  ABC_tran_CTD  ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5     1e-05     0.045      66      95 ..      96     125 ..      75     126 .. 0.86
   2 ?   -0.7   0.1      0.41   1.8e+03       9      27 ..     178     196 ..     173     201 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
                           BLOC1_2  66 qidqiekqvteLeeavseLDeyskeLEakf 95 
                                        +++i +q+++L+++v+ LD+  +e Ea++
  gi|300713116|ref|YP_003738928.1|  96 TVEDIPAQLEQLTATVESLDSRLSEVEAQL 125
                                       6899***********************987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.41
                           BLOC1_2   9 kyleaeleatvedyklLek 27 
                                       +++  ele ++++++ L +
  gi|300713116|ref|YP_003738928.1| 178 DIVMDELEYSADEVEELVE 196
                                       5566666666666654443 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   3.1e-05      0.14      22      66 ..      82     126 ..      74     140 .. 0.88
   2 ?   -3.0   0.0       2.3     1e+04      28      41 ..     182     195 ..     175     198 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
                           NPV_P10  22 alqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLn 66 
                                        l qq+ + +++  +v+++ ++L++++a++++l++ +++++  L 
  gi|300713116|ref|YP_003738928.1|  82 ELGQQILEARDEDFTVEDIPAQLEQLTATVESLDSRLSEVEAQLE 126
                                       5778888889999999**********************9998776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.3
                           NPV_P10  28 ddvqenlpdvteln 41 
                                       d+++    +v+el 
  gi|300713116|ref|YP_003738928.1| 182 DELEYSADEVEELV 195
                                       44444444444444 PP

>> Rv2175c_C  Rv2175c C-terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.7e-05      0.21      12      38 ..       6      38 ..       5      42 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.7e-05
                         Rv2175c_C 12 rDgGfddeeilrWLFteDesLp......grPid 38
                                      rD  ++++ei+r LF+++++L+       +Pid
  gi|300713116|ref|YP_003738928.1|  6 RDLDWQSQEIIRTLFEHEQTLTstqvreTTPID 38
                                      58899*****************88888778887 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3     3e-05      0.14       9      39 ..     103     133 ..      85     154 .. 0.67
   2 ?   -2.8   0.1       1.8   8.1e+03      50      60 ..     184     194 ..     180     198 .. 0.41

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
                      ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpelysd 39 
                                       +le+l a+ e+L+ +++e+ea+l+  + + +
  gi|300713116|ref|YP_003738928.1| 103 QLEQLTATVESLDSRLSEVEAQLEGGSTTDN 133
                                       5778888888888888888888876665433 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
                      ABC_tran_CTD  50 leeleaeLeel 60 
                                       le   +e eel
  gi|300713116|ref|YP_003738928.1| 184 LEYSADEVEEL 194
                                       33333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1558.76
//
Query:       gi|300713117|ref|YP_003738929.1|  [L=199]
Description: haloacid dehalogenase, type II [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-07   32.2   0.0    1.3e-07   31.8   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    4.8e-05   23.3   0.1    7.7e-05   22.7   0.1    1.3  1  Hydrolase_like  HAD-hyrolase-like
     0.0018   18.6   0.0     0.0024   18.2   0.0    1.1  1  Hydrolase       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.2e-11   1.3e-07      80     178 .]      62     157 ..      47     157 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.2e-11
                             HAD_2  80 pydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeevi 156
                                       p ++ +  L +L + +y ++  ++++ + +++  +++gi    d i+++e  ++ KPd e +++a++ l+l+++ev+
  gi|300713117|ref|YP_003738929.1|  62 PWPDSIPGLIQL-RSEYLIAPLSNGHIRLLTNIAKRTGI--PWDLILSAELSGHYKPDEEAYLTAVDYLDLQPAEVM 135
                                       667777788888.78999999999999999999999998..89********************************** PP

                             HAD_2 157 yvGDsptDieaakkagikviav 178
                                       +v  + +D+ea++++g++++ v
  gi|300713117|ref|YP_003738929.1| 136 MVAAHERDLEASREVGLRTAYV 157
                                       *****************99865 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   1.3e-08   7.7e-05       4      74 ..     114     188 ..     112     189 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.3e-08
                                       TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESS....SSS-TTTHHHHH.HHHT---SEEES CS
                    Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVlt....Gvtrpedleepe.hkptyvaddlae 74 
                                       KP  e+y  a+  l+++p+ev+m+    + D+++ +++G++++ V +    G +r++d+e+p   + +++addl +
  gi|300713117|ref|YP_003738929.1| 114 KPDEEAYLTAVDYLDLQPAEVMMVAAH-ERDLEASREVGLRTAYVHRpfewGPERADDVERPSqSAYDVIADDLVD 188
                                       9**************************.*****************9844445578888888773566668999876 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.1e-07    0.0024     120     210 .]      63     151 ..      57     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.1e-07
                                       HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGE.SEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEE CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                         Hydrolase 120 kpeaaeavasLkaagievvlltgdnpetaeraanqlGddyf.daviasdietvakpspegkvaaireLqgkpeevam 195
                                       +p+    + +L++  + ++ l++++ +    +a++ G  +  d +++++ +++ kp+ e+++ a++ L  +p+ev+m
  gi|300713117|ref|YP_003738929.1|  63 WPDSIPGLIQLRSEYL-IAPLSNGHIRLLTNIAKRTG--IPwDLILSAELSGHYKPDEEAYLTAVDYLDLQPAEVMM 136
                                       6666666778888777.99999***************..6669999999999************************* PP

                                       EESSHHHHHHHHHTT CS
                                       xxxxxxxxxxxxxxx RF
                         Hydrolase 196 VGDgvnDaaalaaAg 210
                                       V     D++a +++g
  gi|300713117|ref|YP_003738929.1| 137 VAAHERDLEASREVG 151
                                       *99988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1591.75
//
Query:       gi|300713118|ref|YP_003738930.1|  [L=47]
Description: transcription regulator [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-05   25.2   0.1    1.3e-05   25.0   0.1    1.1  1  PadR      Transcriptional regulator PadR-like family
     0.0036   17.7   0.0     0.0041   17.6   0.0    1.1  1  HTH_27    Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.016   15.0   0.0    1.1  1  DUF1495   Winged helix DNA-binding domain (DUF1495)
      0.061   13.3   0.0      0.073   13.1   0.0    1.1  1  HTH_45    Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1     3e-09   1.3e-05      35      70 ..       2      33 ..       1      37 [. 0.92

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 3e-09
                                      HHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCC CS
                              PadR 35 YpaLkrLekeglveseweesgegpprkyYrlTdaGr 70
                                      Yp+L++L +eg++e++  +    ++++ Y+lTd+G 
  gi|300713118|ref|YP_003738930.1|  2 YPNLDSLVQEGYIEKSALD----KRTNQYKLTDEGT 33
                                      ****************998....59*********96 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   9.2e-07    0.0041      39      68 .]       5      32 ..       1      32 [. 0.89

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.2e-07
                            HTH_27 39 lkkLtekGLvertgdeadrrekrvrlTdkG 68
                                      l+ L+  G++  ++++ d+r+ +++lTd+G
  gi|300713118|ref|YP_003738930.1|  5 LDSLVQEGYI--EKSALDKRTNQYKLTDEG 32
                                      899*******..666778***********9 PP

>> DUF1495  Winged helix DNA-binding domain (DUF1495)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.5e-06     0.016      53      84 ..       2      33 ..       1      37 [. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.5e-06
                           DUF1495 53 ynsessLielGLveeeeeseglklYklteeGi 84
                                      y + +sL++ G +e+   ++ ++ Yklt+eG 
  gi|300713118|ref|YP_003738930.1|  2 YPNLDSLVQEGYIEKSALDKRTNQYKLTDEGT 33
                                      55678********99999************96 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.6e-05     0.073      40      63 ..       5      33 ..       2      38 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
                            HTH_45 40 LdmLvekgli.....kkskekYvlTekGl 63
                                      Ld Lv++g+i     +k++++Y+lT++G 
  gi|300713118|ref|YP_003738930.1|  5 LDSLVQEGYIeksalDKRTNQYKLTDEGT 33
                                      8999*****988888999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 385.28
//
Query:       gi|300713119|ref|YP_003738931.1|  [L=261]
Description: RbsA2 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-32  113.0   0.0      2e-32  112.5   0.0    1.2  1  ABC_tran     ABC transporter
    3.5e-11   43.5   0.1    4.6e-05   23.4   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00024   20.6   0.9     0.0069   15.8   0.9    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00043   20.0   0.0    0.00081   19.1   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
    0.00062   19.7   0.0     0.0015   18.5   0.0    1.6  2  RsgA_GTPase  RsgA GTPase
     0.0014   19.0   1.2     0.0077   16.6   1.2    2.1  1  AAA_16       AAA ATPase domain
     0.0023   17.5   0.1        1.3    8.5   0.0    2.4  2  AAA_25       AAA domain
     0.0082   15.9   0.1        1.1    9.0   0.0    2.3  2  IstB_IS21    IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.011   14.6   0.5       0.18   10.6   0.2    2.3  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.012   14.5   0.0      0.018   13.9   0.0    1.2  1  DLIC         Dynein light intermediate chain (DLIC)
      0.015   15.8   0.0      0.033   14.7   0.0    1.5  1  AAA_23       AAA domain
       0.02   14.6   0.9       0.32   10.7   0.7    2.2  1  AAA_30       AAA domain
      0.032   14.5   0.1       0.67   10.2   0.0    2.3  2  AAA_22       AAA domain
      0.037   14.3   0.1       0.42   10.9   0.1    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.039   13.9   0.0      0.063   13.2   0.0    1.3  1  Rad17        Rad17 P-loop domain
      0.047   14.1   0.4        6.2    7.3   0.0    2.8  2  AAA          ATPase family associated with various cellular a
      0.047   13.4   0.0       0.12   12.1   0.0    1.7  2  AAA_15       AAA ATPase domain
       0.09   12.5   0.0        1.2    8.8   0.0    2.1  2  AAA_24       AAA domain
      0.096   11.3   0.0        2.3    6.8   0.0    2.0  2  AAA_13       AAA domain
        0.1   12.7   0.1       0.54   10.4   0.0    2.0  2  MMR_HSR1     50S ribosome-binding GTPase
       0.12   12.4   0.0       0.25   11.3   0.0    1.5  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
       0.18   11.0   1.5        1.9    7.7   1.5    2.1  1  KAP_NTPase   KAP family P-loop domain
       0.19   12.3   0.5        1.5    9.3   0.5    2.3  1  AAA_18       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.0   2.6e-35     2e-32       1     137 []      21     177 ..      21     177 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 2.6e-35
                                       EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBH CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
                          ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltv 76 
                                       l++vs+ ++e+e++a++G+nGaGKStL+k+l+g  +pt G   ++g++ +    +    + i+++ q+  + p+ tv
  gi|300713119|ref|YP_003738931.1|  21 LDDVSFAVRENEVLALMGDNGAGKSTLIKILSGVNDPTRGMFYVNGQEANFgSYEDAEAAGIATVYQDLAIAPNRTV 97 
                                       79************************************************96666677889**************** PP

                                       HHH.......................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEE CS
                                       xxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                          ABC_tran  77 ren.......................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkll 130
                                       +en                       e++++++k+l++lg++ +++  +      LSgGq+q va+ara+ ++p+++
  gi|300713119|ref|YP_003738931.1|  98 KENvflgkeplvegklgewlrivdddEMERQADKVLNELGMEIDPNADC----GDLSGGQQQSVAIARAIESDPDIV 170
                                       *******************************************999999....************************ PP

                                       EEESTTT CS
                                       xxxxxxx RF
                          ABC_tran 131 llDEpta 137
                                       ++DEpt+
  gi|300713119|ref|YP_003738931.1| 171 IMDEPTS 177
                                       *****96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     6e-08   4.6e-05       3     114 ..      35     135 ..      33     139 .. 0.87
   2 !   18.4   0.0     2e-06    0.0015     235     297 ..     147     206 ..     135     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 6e-08
                            AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrle 79 
                                       +l G+Ng+GKS+L+++l+++            +++ +g++ +   + ++++ e + + +i  ++ q+  +  + +++
  gi|300713119|ref|YP_003738931.1|  35 ALMGDNGAGKSTLIKILSGV------------NDPTRGMFYVNGQEANFGSYEDAEAAGIA-TVYQDLAIAPNRTVK 98 
                                       789**************999............67888888888888888888888888888.888999999999999 PP

                            AAA_21  80 rsqv..eeklssvetllesgllldkrsleeedvfnpe 114
                                       ++ +  +e+l + + +++ ++ +d++ +++ d++ +e
  gi|300713119|ref|YP_003738931.1|  99 ENVFlgKEPLVEGKLGEWLRIVDDDEMERQADKVLNE 135
                                       9999999999999999999999999999999987665 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2e-06
                            AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                                        +lS G+++  a++ a+ +++   ++++ DEp + L  ++  r+l l+++l++ g  v+l+ H
  gi|300713119|ref|YP_003738931.1| 147 GDLSGGQQQSVAIARAIESDP---DIVIMDEPTSALSVEAADRILNLIERLKEQGRTVLLVDH 206
                                       68999*****77777777777...************************999998999988655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.9   8.9e-06    0.0069      24     207 ..      31     217 ..      22     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.9e-06
                                       SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEE CS
                                       xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
                             SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.lkiekeevsi 99 
                                       +++ a++G NG+GKs l+  ++ v     ++ +   + ++  +   + + ++ a ++ ++++   +  ++ ke+v +
  gi|300713119|ref|YP_003738931.1|  31 NEVLALMGDNGAGKSTLIKILSGVND--PTRGMFYVNGQEANFG--SYEDAEAAGIATVYQDLAIApNRTVKENVFL 103
                                       56778999999999999998865544..4445555555554443..5666677777777765554434567788899 PP

                                       EEEEETTSE..EEEEETTEEE-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTT CS
                                       xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
                             SMC_N 100 srrvkrkge..seykingkevtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeid 168
                                        ++   +g+     +i + +  +++  ++l++ g++++       LSgG+++ va+a   Ai++ +p  ++++De  
  gi|300713119|ref|YP_003738931.1| 104 GKEPLVEGKlgEWLRIVDDDEMERQADKVLNELGMEIDpnadcgDLSGGQQQSVAIAR--AIES-DP-DIVIMDEPT 176
                                       888888887656677777777788889999999999889999999******9777764..5543.44.489****** PP

                                       TTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS.HHHCCC-SC CS
                                       xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxx RF
                             SMC_N 169 aaLDeknvkkvaellkekskn.aQfivislr.eemlekadk 207
                                       +aL  +   ++ +l+++ +++   ++ + ++ ee++e ad+
  gi|300713119|ref|YP_003738931.1| 177 SALSVEAADRILNLIERLKEQgRTVLLVDHNlEEVFEVADR 217
                                       ****************9988844455555543667777766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     1e-06   0.00081      13      39 ..      22      48 ..      16      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1e-06
                            AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                                      d+ ++ ++++++  l+G++G+GKSTl+
  gi|300713119|ref|YP_003738931.1| 22 DDVSFAVRENEVLALMGDNGAGKSTLI 48
                                      5667777777799*************9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.9e-06    0.0015      88     122 ..      19      54 ..       6      81 .. 0.86
   2 ?   -2.9   0.0         7   5.5e+03      84      99 ..     181     196 ..     168     213 .. 0.53

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.9e-06
                                       TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
                       RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                                       ++l++++ ++++ ++ +l+G  G+GKStLi+ l + 
  gi|300713119|ref|YP_003738931.1|  19 QALDDVSFAVREnEVLALMGDNGAGKSTLIKILSGV 54 
                                       56788888888779*****************99874 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7
                                       TTTHTTHHHHHHHCTT CS
                       RsgA_GTPase  84 aktkegleelkellkd 99 
                                       ++  + + +l e+lk+
  gi|300713119|ref|YP_003738931.1| 181 VEAADRILNLIERLKE 196
                                       3333333333333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.2   9.9e-06    0.0077      18     143 ..      27     206 ..       7     244 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.9e-06
                            AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd.ggif.lrgkcdqlesaipy.sa.laqalareellrqllde.. 88 
                                       +vr++  e++ l G+ G GKs+l++ l   +++  +g f ++g+   +    +y +a  a +++  + l+   ++  
  gi|300713119|ref|YP_003738931.1|  27 AVREN--EVLALMGDNGAGKSTLIKILS-GVNDPtRGMFyVNGQEANF---GSYeDAeAAGIATVYQDLAIAPNRtv 97 
                                       34433..899**************8887.5555534555566666666...22232212222222244444444455 PP

                            AAA_16  89 ......................aesaeleawrekleeala..................................... 106
                                                                                                                    
  gi|300713119|ref|YP_003738931.1|  98 kenvflgkeplvegklgewlriV----------------Dddemerqadkvlnelgmeidpnadcgdlsggqqqsva 158
                                       55555556664454444444442................02223444445555555889999999999999888888 PP

                            AAA_16 107 ............avpelagaeasrllellkrllallsrderplvlvlDd 143
                                                   + +e ++a++   ++ + +l+++l++++r +vl++D+
  gi|300713119|ref|YP_003738931.1| 159 iaraiesdpdivIMDEPTSALSVEAADRILNLIERLKEQGR-TVLLVDH 206
                                       88777777777755555555558888888888888888566.8998883 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0017       1.3      31      50 ..      29      48 ..      20      53 .. 0.90
   2 !    6.8   0.0     0.006       4.6     132     188 ..     158     206 ..     109     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
                            AAA_25 31 pagelallaGapgtGKttla 50
                                      +++e+ +l+G+ g+GK+tl 
  gi|300713119|ref|YP_003738931.1| 29 RENEVLALMGDNGAGKSTLI 48
                                      6899**************95 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.006
                            AAA_25 132 aleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                                       a+++aie+  +++ v+ D  ++al+ +     +++++++ +er+ ++ g +vllv H
  gi|300713119|ref|YP_003738931.1| 158 AIARAIES--DPDIVIMDEPTSALSVE-----AADRILNLIERL-KEQGRTVLLVDH 206
                                       67888888..79999999999999875.....5699*******9.79999*****99 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0014       1.1      34      64 ..      17      48 ..      11      60 .. 0.85
   2 ?    4.6   0.0      0.03        24     107     154 ..     165     211 ..     150     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0014
                         IstB_IS21 34 kvkeLatlsf.iekkenivllGpsGvGKshla 64
                                      ++++L   sf ++++e ++l+G  G+GKs l 
  gi|300713119|ref|YP_003738931.1| 17 AIQALDDVSFaVRENEVLALMGDNGAGKSTLI 48
                                      578888899867889999***********885 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.03
                         IstB_IS21 107 lkvdllilDdlgllpldqaeaellfeviekryerrsiiitsnlpfaew 154
                                         +d++i+D+  +  l+ ++a  ++++ie+  e+  +++  + +++e 
  gi|300713119|ref|YP_003738931.1| 165 SDPDIVIMDEP-TSALSVEAADRILNLIERLKEQGRTVLLVDHNLEEV 211
                                       456999**996.678999*************99999998777776665 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0       0.1        78     246     265 ..      33      52 ..      25      60 .. 0.79
   2 ?   10.6   0.2   0.00023      0.18     321     362 ..     147     188 ..     131     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.1
                                       EEEEEE-TTSSHHHHHHHHH CS
                        ABC_ATPase 246 vtlIvGggfhGKsTLLeAle 265
                                       v +++G +  GKsTL++ l+
  gi|300713119|ref|YP_003738931.1|  33 VLALMGDNGAGKSTLIKILS 52 
                                       88899***********9764 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00023
                                       SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHH CS
                        ABC_ATPase 321 edASGStsqAanimealeagakllLiDEDtsAtNlmirDerm 362
                                        d SG   q+++i++a+e + +++++DE tsA      D+ +
  gi|300713119|ref|YP_003738931.1| 147 GDLSGGQQQSVAIARAIESDPDIVIMDEPTSALSVEAADRIL 188
                                       678*****************************8777766554 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.4e-05     0.018      27      54 ..      33      60 ..      24      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
                              DLIC 27 svlvlGedgsGkttliaklqGveeekkG 54
                                       + ++G++g+Gk+tli  l Gv+++ +G
  gi|300713119|ref|YP_003738931.1| 33 VLALMGDNGAGKSTLIKILSGVNDPTRG 60
                                      45689*******************9977 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.3e-05     0.033      15      38 ..      24      50 ..      13      54 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.3e-05
                            AAA_23 15 idF...skgltlItGpNGaGKTTildA 38
                                      + F   ++ + ++ G+NGaGK+T++  
  gi|300713119|ref|YP_003738931.1| 24 VSFavrENEVLALMGDNGAGKSTLIKI 50
                                      44555677888999**********976 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   0.00042      0.32      14     114 ..      27     193 ..      19     211 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00042
                            AAA_30  14 ltsgdrvavltGpAGtGKttalkalreaweaa.g.........................grviglAptgkaAkv..L 62 
                                       +  ++ v +l G  G+GK+t++k l  + +   g                         ++ +++Ap+ ++ ++  L
  gi|300713119|ref|YP_003738931.1|  27 AVRENEVLALMGDNGAGKSTLIKILSGVNDPTrGmfyvngqeanfgsyedaeaagiatvYQDLAIAPNRTVKENvfL 103
                                       455667999**************998887777556666666555555555555555444444444554444444222 PP

                            AAA_30  63 a...............eelgieastiakllkrlk......................................grarl 86 
                                       +                                +                                      +  ++
  gi|300713119|ref|YP_003738931.1| 104 GkeplvegklgewlriV----------------DddemerqadkvlnelgmeidpnadcgdlsggqqqsvaiA-RAI 163
                                       23333333322222220................1333333333333333355566666666667777777642.345 PP

                            AAA_30  87 epg.tllivDEagmv.dtkqlaallkaaek 114
                                       e++ +++i DE   + + + ++++l+ +e+
  gi|300713119|ref|YP_003738931.1| 164 ESDpDIVIMDEPTSAlSVEAADRILNLIER 193
                                       555677777774333355555555444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00085      0.67       5      25 ..      31      51 ..      28     107 .. 0.84
   2 ?    2.2   0.1      0.26     2e+02      38     104 ..     165     236 ..     128     249 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00085
                            AAA_22  5 agilvvtGesGtGKTtllrrl 25
                                        +l+++G  G+GK+tl++ l
  gi|300713119|ref|YP_003738931.1| 31 NEVLALMGDNGAGKSTLIKIL 51
                                      56899************9976 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.26
                            AAA_22  38 erpevvfvtlpsstsskdllrellralglelka......erlsseellealeqalraravielliiDEaqhlr 104
                                        +p++v ++ p s  s + + ++l+ +++ ++         +++ee++e   +a+  ++  +l+ ++++++l+
  gi|300713119|ref|YP_003738931.1| 165 SDPDIVIMDEPTSALSVEAADRILNLIERLKEQgrtvllVDHNLEEVFEVADRAAVLASG-RLVGVEDIDRLD 236
                                       566666777777775555556666666654444333444334444444333333333333.566666666664 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00053      0.42      19      89 ..     135     192 ..     122     193 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00053
                           SbcCD_C  19 edgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                                       e g e + ++++g lSGG++q   ++a+a     +++s      ++++v++DE  s l+ e ++++l+l+e
  gi|300713119|ref|YP_003738931.1| 135 ELGMEIDPNADCGDLSGGQQQ---SVAIA----RAIES------DPDIVIMDEPTSALSVEAADRILNLIE 192
                                       456677778899999999993...44444....45555......699******************999987 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.1e-05     0.063      33      69 ..      19      55 ..      12      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.1e-05
                             Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLskel 69
                                      ++l+  +   r++++L + G  G gkst +k+Ls   
  gi|300713119|ref|YP_003738931.1| 19 QALDDVSFAVRENEVLALMGDNGAGKSTLIKILSGVN 55
                                      56777778888899*******************9765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0079       6.2       2      52 ..      35      88 ..      34     102 .. 0.78
   2 ?    4.3   0.2     0.066        51      52     105 ..     161     202 ..     127     254 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0079
                                      EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCS.SSSTTHHHHHHHHHHHH CS
                               AAA  2 llyGppGtGKTllakavakelg..vefleisgsell.skyvgesekkirelfke 52
                                       l+G  G GK++l+k +    +  + ++ ++g e    +y  + ++ i+ + ++
  gi|300713119|ref|YP_003738931.1| 35 ALMGDNGAGKSTLIKILSGVNDptRGMFYVNGQEANfGSYEDAEAAGIATVYQD 88
                                      589************998775333668888888887777877777777777766 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.066
                                       HHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEE CS
                               AAA  52 eakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskviv 105
                                       +a e+  p i+++DE  +  + +          +++ +l+ ++++k++ + +++
  gi|300713119|ref|YP_003738931.1| 161 RAIESD-PDIVIMDEPTSALSVE----------AADRILNLIERLKEQGR-TVL 202
                                       333333.6777777766665555..........55555555555555433.222 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.12      23      48 ..      30      56 ..      19     143 .. 0.80
   2 ?   -1.4   0.0       1.8   1.4e+03     319     351 ..     162     194 ..     153     206 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                            AAA_15 23 ee.ltvliGkNnsGKSsilealdlFln 48
                                      e+ +  l G N++GKS+++++l    +
  gi|300713119|ref|YP_003738931.1| 30 ENeVLALMGDNGAGKSTLIKILSGVND 56
                                      444999***************976555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
                            AAA_15 319 ekeeknvilliEEPEahLHpqaqkvlikllkel 351
                                        +e++++i++++EP   L  +a   + +l+ +l
  gi|300713119|ref|YP_003738931.1| 162 AIESDPDIVIMDEPTSALSVEAADRILNLIERL 194
                                       467899999999997666666666655555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0016       1.2       4      22 ..      33      51 ..      30      91 .. 0.87
   2 ?    1.6   0.0      0.25     2e+02     106     139 ..     182     215 ..     167     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0016
                            AAA_24  4 kiliyGpsgiGKTtlakel 22
                                       ++++G++g+GK+tl+k l
  gi|300713119|ref|YP_003738931.1| 33 VLALMGDNGAGKSTLIKIL 51
                                      689************9977 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.25
                            AAA_24 106 elaeefrrllkklqelrknvifiahektrkdedp 139
                                       e+a+++ +l+++l+e + +v ++ h  ++ +e  
  gi|300713119|ref|YP_003738931.1| 182 EAADRILNLIERLKEQGRTVLLVDHNLEEVFEVA 215
                                       678899999999999999*******999888765 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0029       2.3      23      40 ..      38      55 ..      31      79 .. 0.86
   2 ?    2.4   0.0     0.059        46     526     572 ..     166     209 ..     157     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0029
                            AAA_13 23 GwNGaGKTtLSrllrsle 40
                                      G NGaGK+tL ++l+ ++
  gi|300713119|ref|YP_003738931.1| 38 GDNGAGKSTLIKILSGVN 55
                                      99***********99874 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.059
                            AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnle 572
                                          iv++D P S L+ ++   + +li+      ++ + +++  Hnle
  gi|300713119|ref|YP_003738931.1| 166 DPDIVIMDEPTSALSVEAADRILNLIERLK---EQGRTVLLVDHNLE 209
                                       568************************997...89999999999987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00069      0.54       3      21 ..      35      53 ..      33      88 .. 0.87
   2 ?    0.0   0.0       1.1   8.8e+02      71      86 ..     179     193 ..     126     238 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00069
                                      EEEESTTSSHHHHHHHHHT CS
                          MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                                      a++G   +GKStLi+ l+g
  gi|300713119|ref|YP_003738931.1| 35 ALMGDNGAGKSTLIKILSG 53
                                      899************9987 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.1
                                       HHHHCTSEEEEEEETT CS
                          MMR_HSR1  71 laleeadlillvvdas 86 
                                       l++e ad il +++ +
  gi|300713119|ref|YP_003738931.1| 179 LSVEAADRILNLIE-R 193
                                       23333444444443.2 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00032      0.25      19      39 ..      31      51 ..      12      57 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
                                      TEEEEEEESTTSSHHHHHHHH CS
                              TsaE 19 gdvilLeGdLGaGKTtlvrgl 39
                                      ++v++L Gd GaGK+tl++ l
  gi|300713119|ref|YP_003738931.1| 31 NEVLALMGDNGAGKSTLIKIL 51
                                      779***************976 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.5    0.0024       1.9      22     194 ..      33     244 ..      18     247 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0024
                        KAP_NTPase  22 vvgLygkWGsGKssllnkledelkefakpvrflfaefnawsfkggddavaellaaLadaleeeygql.atkllrakk 97 
                                       v++L g  G+GKs+l++ l    ++   ++ ++ ++ + + f +++da a+ +a+ ++ l     +  + +++++k+
  gi|300713119|ref|YP_003738931.1|  33 VLALMGDNGAGKSTLIKILSG-VNDP--TRGMFYVNGQEANFGSYEDAEAAGIATVYQDLAIAPNRTvKENVFLGKE 106
                                       566777777888887776654.4444..4667777777777777777777777666666665554431445666666 PP

                        KAP_NTPase  98 ...................................lkalkikgkiklrkacaiplvlilevalflliegasllavls 139
                                                                          ++a   +++++   ++ai+ ++  ++ ++ + e  s+l+v  
  gi|300713119|ref|YP_003738931.1| 107 plvegklgewlrivdddemerqadkvlnelgmeidPNADCGDLSGGQQQSVAIARAIESDPDIVIMDEPTSALSVEA 183
                                       66666677777777777666666666666667666777777777777777788888888888877777777777777 PP

                        KAP_NTPase 140 raaklkeeaplkklqteveelladmektLda.......lqkrlVvviDdLDrceteevlqll 194
                                       +  +l+  + lk+++ +v  +  ++e+ ++        ++ rlV+v  d+Dr+++e ++q++
  gi|300713119|ref|YP_003738931.1| 184 ADRILNLIERLKEQGRTVLLVDHNLEEVFEVadraavlASGRLVGV-EDIDRLDQESMIQMM 244
                                       6667777777777776654333444444443444888788888886.779999999999997 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5     0.002       1.5       3      19 ..      36      52 ..      34     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.002
                            AAA_18  3 ltGtpGvGKttlakeLs 19
                                      l+G  G+GK+tl k Ls
  gi|300713119|ref|YP_003738931.1| 36 LMGDNGAGKSTLIKILS 52
                                      899************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 1753.06
//
Query:       gi|300713120|ref|YP_003738932.1|  [L=325]
Description: sugar ABC transporter membrane protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-46  157.3  42.5    5.7e-46  156.9  42.5    1.2  1  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
        1.4    8.8   7.5       0.19   11.6   0.4    2.3  2  Pam17         Mitochondrial import protein Pam17


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9  42.5   6.3e-50   5.7e-46       1     268 []      48     313 ..      48     313 .. 0.91

  Alignments for each domain:
  == domain 1  score: 156.9 bits;  conditional E-value: 6.3e-50
                      BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllv 77 
                                       ++ln+++++a++a +++Gl++v+ i+ +i+ ++g++mal+a++aa++l+++   ++ a++val+vg +vgl +g+ +
  gi|300713120|ref|YP_003738932.1|  48 NLLNIARQTAVVAVLGVGLTMVI-ISAEIDVSVGSVMALSAVLAAMALNAGFG-WIGAVVVALGVGTIVGLTNGFFT 122
                                       589********************.***********************999776.9********************** PP

                      BPD_transp_2  78 lrlkvdeliitllllsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrf 154
                                       ++++++++++tl++l +++g +l ++tg    v + +++  +++ +   ++     iv++a l+v++v+++l +trf
  gi|300713120|ref|YP_003738932.1| 123 VYFGIPSFLVTLGMLAAARGAAL-IVTGTETIVVRDPGFFNVFAGSIGPIPA----IVIWAGLAVVLVHYVLSYTRF 194
                                       ***********************.4444444444444444444443333333....459****************** PP

                      BPD_transp_2 155 GralravgeneeaaralGinvkrvklltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGga...... 225
                                       Gr+++ +g++ +aar+ Gi++ +vkl+t  ++g lAg+aG+l++ +l ++ p++g+g+++ +iaav+lGg+      
  gi|300713120|ref|YP_003738932.1| 195 GRHIYTTGDDSQAARYNGIDTAKVKLTTLGVTGTLAGFAGLLMIGRLSAARPDMGMGIELAVIAAVILGGTslfggr 271
                                       ***************************************************************************** PP

                      BPD_transp_2 226 gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                                       g + gt+iGal+++v+++ +l l g+ t+ + ++ g+++il++
  gi|300713120|ref|YP_003738932.1| 272 GWVTGTIIGALLLSVIDN-GLLLHGFGTSHQEFFRGIVIILAV 313
                                       ******************.99999999*************986 PP

>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.8     0.069   6.2e+02      40      87 ..      57     104 ..      38     125 .. 0.69
   2 ?   11.6   0.4   2.1e-05      0.19      37     119 ..     221     307 ..     213     310 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.069
                             Pam17  40 ivtallglllgaavlstleidp.tqqilglDplvvlglatlasgalGwl 87 
                                        v+a+lg+ l++ ++s+ eid  +  ++ l  ++++ +  +++g +G +
  gi|300713120|ref|YP_003738932.1|  57 AVVAVLGVGLTMVIISA-EIDVsVGSVMALSAVLAAMALNAGFGWIGAV 104
                                       45566666666655555.7777678887777777666666666555544 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.1e-05
                             Pam17  37 vasivtallglllgaavlstleidptqqilglDplvvlgl...atlasgalGwllGpvlgsavfkllnrk.klkqle 109
                                        +  vt+ l+ ++g+ ++ +l++   ++ +g++  v++++   +t  +g+ Gw++G ++g  + +++ +   l+ + 
  gi|300713120|ref|YP_003738932.1| 221 TTLGVTGTLAGFAGLLMIGRLSAARPDMGMGIELAVIAAVilgGTSLFGGRGWVTGTIIGALLLSVIDNGlLLHGFG 297
                                       455567778888888999999988888889999988766511157788999**************997661567899 PP

                             Pam17 110 ekekeFleri 119
                                       + ++eF++ i
  gi|300713120|ref|YP_003738932.1| 298 TSHQEFFRGI 307
                                       9999999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2230.33
//
Query:       gi|300713121|ref|YP_003738933.1|  [L=391]
Description: ABC-type sugar transport system periplasmic component-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-32  113.7   2.9    1.4e-32  113.3   2.9    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
    7.5e-06   25.6   5.0    1.5e-05   24.7   5.0    1.5  1  TAT_signal    TAT (twin-arginine translocation) pathway signa
     0.0099   15.3   0.0      0.014   14.8   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   2.9   2.3e-36   1.4e-32       2     250 ..      92     344 ..      91     352 .. 0.90

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 2.3e-36
                                       EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT..-SEEEE--SSHHHHHHHHHHH CS
                      Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakg..vdgiivapvdstalapalkka 76 
                                       ++v+++   ++ +  regle   +elg+ev+ v+ ae da++Qv+++e++  +    d+++  pvd+t  ++   ++
  gi|300713121|ref|YP_003738933.1|  92 SIVFHYLRTAWTRLQREGLETRFEELGVEVEGVYGAEMDASQQVDVLETLAGQAeeIDAVVSIPVDATVTEESYRQL 168
                                       6788888889****************************************777788********************* PP

                                       HHTT-EEEEESTT...GCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHH CS
                      Peripla_BP_4  77 kaaGIpVvafdsd...dapsgerlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlk 150
                                       +++ + V+++d         +e++  v++dn  +G+++++ lae +g + g+v +++ +++   + er++g+r+v++
  gi|300713121|ref|YP_003738933.1| 169 AERDVEVIFIDNVpdgFDHPHEYAGGVAADNRGIGTIAGRILAEVVG-E-GQVGLITHEADMYVNDEREAGVRDVFN 243
                                       *********9988777556788999*********************9.4.9************************99 PP

                                       H.-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCHHHC.HHHHHHHTTTTSTEEEEEES-HHHHHH CS
                      Peripla_BP_4 151 e.ypgikivaevaganwdaekaqqalealltanp.ldgilaandgmaeg.alealeaaglagkvvvtgqDatpeale 224
                                       + yp+++ivae +g  +d++ a++ ++++l+anp ldgi+a +d++  +  ++a+ +ag++  v vt+ D+ + + e
  gi|300713121|ref|YP_003738933.1| 244 DeYPDVEIVAE-NGFVDDPDGAYSIAQNMLQANPdLDGIYAIWDNPPAAeTASAIDEAGRD--VGVTAADLGKRSAE 317
                                       99********6.5667*****************66******99987664499999999954..66************ PP

                                       HH.HTTSSEEEEE--HHHHHHHHHHHH CS
                      Peripla_BP_4 225 ai.kdGtidatvaqdpyelgyaavela 250
                                        + ++G i ++ +q py++g a + + 
  gi|300713121|ref|YP_003738933.1| 318 IMaAEGPIVGLGSQRPYDQGVAEANMT 344
                                       9989999************97655555 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   5.0   2.4e-09   1.5e-05       2      25 ..      11      34 ..      10      35 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.4e-09
                        TAT_signal  2 lSRRdFLKgsAAaaAAaalggcaa 25
                                      + RR+FLK+++Aa+ +++++gc++
  gi|300713121|ref|YP_003738933.1| 11 IGRRTFLKATGAAGLLTGVAGCTG 34
                                      56********************98 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.4e-06     0.014      54     190 ..     145     287 ..      90     313 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-06
                                       HTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-T....TTS-EEEE-HHHHHHHHHHHHHHH.HHHHTGE CS
                      Peripla_BP_1  54 akgidgliiatsdts..fdditakaesgipvialedaidap....dgvPcvipddtqageestqkLiae.ghkrpia 123
                                       a+ id+++    d     ++ ++ ae ++ vi+++++ d      +    v  d+  +g+ +++ L +  g ++ + 
  gi|300713121|ref|YP_003738933.1| 145 AEEIDAVVSIPVDATvtEESYRQLAERDVEVIFIDNVPDGFdhphEYAGGVAADNRGIGTIAGRILAEVvGEGQ-VG 220
                                       567888876533333223466777777********9943323447444456699************98526666.99 PP

                                       EEEEE-TTSHHHHHHHHHHHHHHHTT-.GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHH CS
                      Peripla_BP_1 124 llegpesaltakervqGflaalaeaGl.evkdvhvalgsndiedaaealnelleshPeidaivainde 190
                                       l+  ++     +er  G ++   +    +v++v      +d  +a++ ++++l+ +P++d i+ai d+
  gi|300713121|ref|YP_003738933.1| 221 LITHEADMYVNDEREAGVRDVFNDE-YpDVEIVAENGFVDDPDGAYSIAQNMLQANPDLDGIYAIWDN 287
                                       9**99*9******************.559999999999**********************99998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2904.29
//
Query:       gi|300713122|ref|YP_003738934.1|  [L=249]
Description: Hydroxypyruvate isomerase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-36  124.6   1.7    4.9e-36  124.2   1.0    1.5  2  AP_endonuc_2    Xylose isomerase-like TIM barrel
     0.0057   15.5   0.0      0.038   12.8   0.0    1.9  2  UxuA            D-mannonate dehydratase (UxuA)
  ------ inclusion threshold ------
      0.016   15.2   0.2        4.7    7.3   0.1    2.4  2  Hydrolase_like  HAD-hyrolase-like
      0.032   13.7   0.1      0.045   13.2   0.1    1.1  1  Ins_P5_2-kin    Inositol-pentakisphosphate 2-kinase
       0.11   12.5   0.0       0.17   11.9   0.0    1.4  1  Macro           Macro domain


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   1.0   1.4e-39   4.9e-36       2     209 ..      12     207 ..      11     208 .. 0.95
   2 ?   -1.8   0.0      0.47   1.7e+03       2      31 ..     215     245 ..     214     249 .] 0.45

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 1.4e-39
                                       HHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS.HHHHHHHHHHHHH CS
                      AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederear.reesvdalkraie 77 
                                       + aaeaG+d++E+f +d +          ++l+ +++ + + ia++ l ++  + +    +++  ++++++l+++i 
  gi|300713122|ref|YP_003738934.1|  12 RHAAEAGVDAIEFFEWDRDEL--------DQLKDIAQTHQVDIAGILLKNGMPSEEPAMTDPDqVDAAIEDLRDTIA 80 
                                       679***************999........79*********************9976665555588889********* PP

                                       HHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC.....HHHHHHHH CS
                      AP_endonuc_2  78 laaaLGapllvlhpGtagagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd.....eelarlld 149
                                       +aa+L+++ +++ +G  + ++  s+e++ + ++++l+ +ad+ae+++v+l++E+l+ s  ++g+     +e+ ++++
  gi|300713122|ref|YP_003738934.1|  81 AAAKLDCESIIVTVG--PEQEAYSREVQHRAIVDVLRSIADEAERKDVTLGVEPLNASVDHPGYyltssREAYDIVE 155
                                       ***************..************************************************************ PP

                                       HHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.EESSTTTTSSTTEESTTSSS CS
                      AP_endonuc_2 150 avdspnvgvclDtgHlliaeedvddalraladrikhvHikDakgdlgagrdrhvpigeGe 209
                                       avds  v + +D++H++iae++v+d + ++adri h H++D+ g        ++++g+Ge
  gi|300713122|ref|YP_003738934.1| 156 AVDSSSVSILFDVYHMQIAEGNVIDSISEYADRIDHYHVADVPG--------RHEPGTGE 207
                                       *****************************************999........88888886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.47
                                       HHHHHCT-SE...EEEECCTCSHHHHCHHHHHH CS
                      AP_endonuc_2   2 aaaaeaGfdg...vElfgrdlvpvselsdeelr 31 
                                       +a+a++Gfdg   +E+++ d+ +++   +++++
  gi|300713122|ref|YP_003738934.1| 215 RAIADTGFDGyigCEFWPTDDPDAT--LEAAVE 245
                                       5677777775211444444433333..244444 PP

>> UxuA  D-mannonate dehydratase (UxuA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.06   2.2e+02      41      97 ..      26      85 ..       6      94 .. 0.68
   2 !   12.8   0.0   1.1e-05     0.038     195     311 ..     121     226 ..     100     233 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.06
                                      ---HHHHHHHHHHHHHTT-EEEEE...E-----HHHHHT-TTHHHHHHHHHHHHHHHHHT CS
                              UxuA 41 vWekeeilklkeeiekagltlevv...esvpvhediklgteerdryienykqtirnlaki 97
                                       W+ +e+ +lk++ +++++ +  +   + +p  e   ++ ++ d  ie+ ++ti   ak+
  gi|300713122|ref|YP_003738934.1| 26 EWDRDELDQLKDIAQTHQVDIAGIllkNGMPSEEPAMTDPDQVDAAIEDLRDTIAAAAKL 85
                                      477777777777777777777665333455666667777777777888888877776665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.1e-05
                                       HHHHT-EEEE---SSSS-BTTB--SSSSHHHHHHHHHH--STTEEEEEEHHHHTTSTT--HHHHHHHHGGGEEEEE- CS
                              UxuA 195 aeevgvklaihPDDPPlpifGlpRivstkedlqrlldlvdspangitlCtGslgaradndlvemikefadriyFahl 271
                                       ae  +v l + P +  +   G    +++  ++  ++++vds + +i +    + + +  ++++ i e+adri   h+
  gi|300713122|ref|YP_003738934.1| 121 AERKDVTLGVEPLNASVDHPGY--YLTSSREAYDIVEAVDSSSVSILFDVYHMQIAE-GNVIDSISEYADRIDHYHV 194
                                       5556666666665555555553..245555666789999999999999998888876.789999************* PP

                                       -EEEE-SSTT-EEEE-TTSSSS-HHHHHHHHHHHHHHH-E CS
                              UxuA 272 RnikreedeksFveaahleGsvdlaevvkalleeeyrryl 311
                                        ++   +++         +G+++  +vv+a+ ++++++y+
  gi|300713122|ref|YP_003738934.1| 195 ADVPGRHEP--------GTGELNYENVVRAIADTGFDGYI 226
                                       ***999544........789****************9997 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0013       4.7      29      74 ..      33      77 ..      33      78 .. 0.92
   2 ?    5.9   0.0    0.0038        14      35      72 ..      79     114 ..      76     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
                                      S-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES CS
                    Hydrolase_like 29 DrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlae 74
                                      D+   Dia  +++ + ++L + G+ ++e + +++ + ++ ++dl++
  gi|300713122|ref|YP_003738934.1| 33 DQ-LKDIAQTHQVDIAGILLKNGMPSEEPAMTDPDQVDAAIEDLRD 77
                                      55.78**********************9999999999999999987 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0038
                                       HHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEE CS
                    Hydrolase_like  35 iagAnnaGwksvLVltGvtrpedleepehkptyvaddl 72 
                                       ia+A +  ++s+ V+ G ++++  +e   +  +++d l
  gi|300713122|ref|YP_003738934.1|  79 IAAAAKLDCESIIVTVGPEQEAYSRE--VQHRAIVDVL 114
                                       89****************99998664..4555555544 PP

>> Ins_P5_2-kin  Inositol-pentakisphosphate 2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.2e-05     0.045     225     304 ..      32     107 ..      20     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
                                       HHHHHHHHTT-SSHHHHHHHHHH.HHHH.....HHHTS-HHHHHHHHHHHHHHHHHHH-.EEEEEESS--SEEEEET CS
                      Ins_P5_2-kin 225 LerLlqlQkldrlDiegllklykkeeekkeessleesesleealelldkyllaatlkDC.Simirlsssaesrelsq 300
                                       L++L+++ +  ++Di g+l     +   +ee+ +++  +++ a+e l++ + aa   DC Si++++   +e++ +s+
  gi|300713122|ref|YP_003738934.1|  32 LDQLKDIAQTHQVDIAGILLK---NGMPSEEPAMTDPDQVDAAIEDLRDTIAAAAKLDCeSIIVTV--GPEQEAYSR 103
                                       78999999999******9944...45789999999*******************************..444444444 PP

                                       TTTE CS
                      Ins_P5_2-kin 301 srgr 304
                                       + ++
  gi|300713122|ref|YP_003738934.1| 104 EVQH 107
                                       4333 PP

>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.7e-05      0.17      47      95 ..      79     127 ..      41     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
                                       EEE-TTSSSSEEEEEESE-TTTSTSTTHHHHHHHHHHHHHHHHHHTT-S CS
                             Macro  47 vtpaynlpakyvihtvgplftsskskeeeellakayknalelaeekgik 95 
                                       +  a +l+++ +i+tvgp  +  +++ ++  +++ ++++ ++ae+k+++
  gi|300713122|ref|YP_003738934.1|  79 IAAAAKLDCESIIVTVGPEQEAYSREVQHRAIVDVLRSIADEAERKDVT 127
                                       667899*************9988****************9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1988.17
//
Query:       gi|300713123|ref|YP_003738935.1|  [L=104]
Description: hypothetical protein HacjB3_19033 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0081   16.2   0.0      0.016   15.3   0.0    1.4  1  HTH_20    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.039   13.9   0.0      0.047   13.6   0.0    1.2  1  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-06     0.016       3      54 ..      16      69 ..      14      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-06
                                      HHHHHS-HHHHHHHHHHSTCTTB-..HHHHHHHHTS-HHHHHHHHHHHHHCTTE CS
                            HTH_20  3 iaeALahPvRrrilraLaraeglt..aselaerldlskntlsyHLrvLeeagLv 54
                                      ++ AL +P  +ril+ L  ++g+   +s +++r d++    ++H+++L   gLv
  gi|300713123|ref|YP_003738935.1| 16 LINALEEPAKARILSVLIAEAGHNpnPSKICKRADIDLEAFYDHIDELCATGLV 69
                                      6789*************777777522688*******************888886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.3e-06     0.047       4      52 ..      22      70 ..      18      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.3e-06
                                      -HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
                            MarR_2  4 tpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                                      +pa ar+L +L ++ g + +++ +++r +++  a   ++++L a GLv 
  gi|300713123|ref|YP_003738935.1| 22 EPAKARILSVLIAEAGHNPNPSKICKRADIDLEAFYDHIDELCATGLVY 70
                                      69**************999****************************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 867.75
//
Query:       gi|300713124|ref|YP_003738936.1|  [L=452]
Description: Beta-agarase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.42   10.7   0.1    2.0  1  DUF4214   Domain of unknown function (DUF4214)


Domain annotation for each model (and alignments):
>> DUF4214  Domain of unknown function (DUF4214)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   2.3e-05      0.42      17      50 ..     189     222 ..     183     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.3e-05
                           DUF4214  17 elsdeeFvttlYqnvldRepDsaGlnywadqLks 50 
                                       e+++  F++    ++++R+pD+aG + w + L+ 
  gi|300713124|ref|YP_003738936.1| 189 EYDEDVFIYPWVHSLVQRDPDAAGKQRWIEILRD 222
                                       567778888888999*************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3198.19
//
Query:       gi|300713125|ref|YP_003738937.1|  [L=282]
Description: putative sugar phosphate isomerase/epimerase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-30  104.5   0.3    7.7e-30  103.9   0.3    1.3  1  AP_endonuc_2    Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.094   12.4   0.0        0.3   10.8   0.0    1.9  1  AP_endonuc_2_N  AP endonuclease family 2 C terminus


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.3   8.6e-34   7.7e-30       4     210 .]      26     222 ..      23     236 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 8.6e-34
                                       HHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS.HHHHHHHHHHHHHHH CS
                      AP_endonuc_2   4 aaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederear.reesvdalkraiela 79 
                                         e+G+d +E+ + d+++ +       ++ ++ ++++gl ++    ++   +++    ea+ re   ++l++ai+++
  gi|300713125|ref|YP_003738937.1|  26 TVEMGYDVIEIPLEDHDDLD------YDRAAEVVRSAGLDVTTAAVMAPERDLVH--PEADkRETGEQYLRDAIDAT 94 
                                       579****************9......69************999998888888766..455567999*********** PP

                                       HHHTBSEEEEEBCC.....GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHH CS
                      AP_endonuc_2  80 aaLGapllvlhpGt.....agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd..eelarlld 149
                                       a LG+ +lv ++ +     + + + ++++++ + lae l+ l +yae+++v+l++E+l++++++l++  e+   l+d
  gi|300713125|ref|YP_003738937.1|  95 ATLGGGTLVGPIYSstgrlW-QMDAEERDTTERELAETLRSLSEYAETRDVTLCVEPLNRFETSLINttEQGIHLVD 170
                                       ***********887999987.88888999************************************************ PP

                                       HHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.EESSTTTTSSTTEESTTSSSS CS
                      AP_endonuc_2 150 avdspnvgvclDtgHlliaeedvddalraladrikhvHikDakgdlgagrdrhvpigeGei 210
                                        vd+p + + lDt+H++i+  dv +a+r  ++r++hvH+           +++  +g+G+i
  gi|300713125|ref|YP_003738937.1| 171 SVDHPSCQLLLDTFHMNIEDKDVPAAIRSADRRMGHVHA---------CANDRGTPGTGHI 222
                                       ***************************************.........6666666666665 PP

>> AP_endonuc_2_N  AP endonuclease family 2 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.4e-05       0.3       2      21 ..     224     243 ..     223     245 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
                    AP_endonuc_2_N   2 wkdifsaLrqiGYdgplSiE 21 
                                       w++i +aL ++++dg++++E
  gi|300713125|ref|YP_003738937.1| 224 WSEIGRALDDVNFDGAVVVE 243
                                       *******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2140.60
//
Query:       gi|300713126|ref|YP_003738938.1|  [L=348]
Description: alcohol dehydrogenase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-27   94.8   1.6    5.1e-27   93.9   1.6    1.5  1  ADH_N          Alcohol dehydrogenase GroES-like domain
    7.5e-21   74.5   0.0    1.2e-20   73.8   0.0    1.3  1  ADH_zinc_N     Zinc-binding dehydrogenase
    5.2e-05   22.8   0.0    7.6e-05   22.3   0.0    1.2  1  Glu_dehyd_C    Glucose dehydrogenase C-terminus
     0.0032   18.5   0.0     0.0053   17.8   0.0    1.4  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.018   15.2   0.0      0.035   14.3   0.0    1.5  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
       0.15   11.4   0.0       0.28   10.5   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   1.6   1.7e-30   5.1e-27       1     109 []      26     136 ..      26     136 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 1.7e-30
                                       TTEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHT CS
                             ADH_N   1 pgevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCke 75 
                                       p+ev+i++ aa++C+sD+ ++ g+     e + ++++GHE +G++ e+g++v++l+vGdrV++++++ cg+C++C +
  gi|300713126|ref|YP_003738938.1|  26 PNEVRIQIGAAALCRSDMSLYYGDplVGGEDSGEVVPGHEPAGTINEIGENVDHLEVGDRVAIDCFVGCGHCEYCLD 102
                                       689********************85555566677******************************************* PP

                                       T-GGG-TTBEETTTSS-SSSBSEEEECGGGEEEE CS
                             ADH_N  76 geenlCeeakllgvsldGgfaeyvvvpekklvkl 109
                                       ge+ lC++ ++lg++++Gg ae +++p+++++k+
  gi|300713126|ref|YP_003738938.1| 103 GEDMLCDDVEILGFDRHGGDAEELITPASTCHKM 136
                                       ******************************9985 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0     4e-24   1.2e-20       1     129 [.     177     306 ..     177     307 .. 0.91

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 4e-24
                                       HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHH CS
                        ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalk 77 
                                       ++Gl +v  A a+G  v++    +e++e+  +lG d++i+++e+d+++++ ++t+geg+d v+ec+G+   +e+al+
  gi|300713126|ref|YP_003738938.1| 177 PMGLSGVLNADAFGSDVVVFELVDERREKGLELGGDYAIDPSEEDPQKEVDAITDGEGLDKVIECSGAVPGIEMALD 253
                                       6899*************************************666********************************* PP

                                       CEEEEEEEEECSCTSSEEEEEHHH...HHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
                        ADH_zinc_N  78 llkpgGrlvvvGggkgeeefdlrn...lllkeksilGsllgslreefkealdlla 129
                                       ++ ++G+++  G  ++++e+++r+   l+ k++  +Gs++ + ++e++e  d+++
  gi|300713126|ref|YP_003738938.1| 254 VVGRHGTVAQLGE-THDSEVPVRPsdhLIHKKVDYVGSWYFD-KHEWPEIADFIV 306
                                       ************6.444444444444599*************.******999975 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.6e-08   7.6e-05      14     200 ..     149     334 ..     143     345 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.6e-08
                       Glu_dehyd_C  14 eKaielaeasrsafe.wepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYv.d.sr 87 
                                         ai   +++ ++      +++ v+G G++GL    +l+a+  g + v v++  d+   +     elG+ Y  d s+
  gi|300713126|ref|YP_003738938.1| 149 TDAIGNLYSTCKQIGlSASDTVGVVGLGPMGLSG--VLNADAFGSD-VVVFELVDERREKG---LELGGDYAiDpSE 219
                                       55555555554444413456788********988..7887555554.87888766655554...5899999633356 PP

                       Glu_dehyd_C  88 etpvdeipea..seemdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNa 162
                                       e+p +e+ ++   e +d v+E+ G+ + +  a++ ++ +G +a lG ++dsev v+ ++   +l+ +    vGs   
  gi|300713126|ref|YP_003738938.1| 220 EDPQKEVDAItdGEGLDKVIECSGAVPGIEMALDVVGRHGTVAQLGETHDSEVPVRPSD---HLIHKKVDYVGSWYF 293
                                       6666666555115899***********************************99998754...344445558999999 PP

                       Glu_dehyd_C 163 nrrhfeaavdt.Laalpeslldelvtkvvdlde..leeAfe 200
                                       + +++ + +d  ++++ ++  +e+++++++l+e  ++e f+
  gi|300713126|ref|YP_003738938.1| 294 DKHEWPEIADFiVNKIGNDRAEEIISHKYPLEEeeVQEGFR 334
                                       99999777765156788888999999999886511555555 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.8e-06    0.0053       1     124 [.     209     338 ..     209     342 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.8e-06
                                       TT-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-E CS
                      ADH_zinc_N_2   1 lGAdevidyrtedfe....aatggegvDvvldtvggealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrs 72 
                                       lG d +id  +ed +    a t+geg D v+++ g    +e +l+v+ ++ G++ ++g++  s+   +p+     ++
  gi|300713126|ref|YP_003738938.1| 209 LGGDYAIDPSEEDPQkevdAITDGEGLDKVIECSGAVPGIEMALDVVgRH-GTVAQLGETHDSEVPVRPSDHLIHKK 284
                                       678888866655555566699**************88899*******666.*******8777777777777777777 PP

                                       EEE--GGG...-.-HHHHHHHHHHHHHHH----EEEEEEGGG..HHHHHHHHHS CS
                      ADH_zinc_N_2  73 vkyeflfsmkasaqadileelaalieeGklrpvvdrvfplee..aaeAhryles 124
                                       v+y+   +  +++  +i + +++ i   + +  +++ +plee  ++e +r+  +
  gi|300713126|ref|YP_003738938.1| 285 VDYVGSWYFDKHEWPEIADFIVNKIGNDRAEEIISHKYPLEEeeVQEGFRKFDN 338
                                       777666653333355556777777777789999999999998778777777655 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.2e-05     0.035       1      46 [.     169     214 ..     169     246 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                                       EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE- CS
                     NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaa 46 
                                       ++g++GlG MG + +ln  + g +v+v+++  e+ e+ ++ g + a
  gi|300713126|ref|YP_003738938.1| 169 TVGVVGLGPMGLSGVLNADAFGSDVVVFELVDERREKGLELGGDYA 214
                                       58*****************************999999888774443 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.5e-05      0.28      36      73 ..     167     204 ..     153     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.5e-05
                                       TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
                      2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73 
                                         tvG++GlG +G +    + afg +v++++   +++e
  gi|300713126|ref|YP_003738938.1| 167 SDTVGVVGLGPMGLSGVLNADAFGSDVVVFELVDERRE 204
                                       679*************************9988766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2772.18
//
Query:       gi|300713127|ref|YP_003738939.1|  [L=282]
Description: putative sugar phosphate isomerase/epimerase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-37  128.1   1.6    4.8e-37  127.5   0.5    1.7  2  AP_endonuc_2    Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.012   15.3   0.9      0.077   12.7   0.3    2.7  2  AP_endonuc_2_N  AP endonuclease family 2 C terminus
      0.037   14.1   1.3       0.12   12.5   0.2    2.2  2  Ferredoxin_N    N-terminal region of 4Fe-4S ferredoxin iron-s


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5   0.5     8e-41   4.8e-37       2     193 ..      21     209 ..      20     223 .. 0.91
   2 ?   -1.0   0.0      0.17     1e+03      25      77 ..     259     277 ..     223     281 .. 0.50

  Alignments for each domain:
  == domain 1  score: 127.5 bits;  conditional E-value: 8e-41
                                       HHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS.HHHHHHHHHHHHH CS
                      AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederear.reesvdalkraie 77 
                                       +++a++G++g+El g d+ +v+      ++el++ ld+ +++++sl++ +  + ++ +  +++ r++ +++lk++i+
  gi|300713127|ref|YP_003738939.1|  21 ERVAKYGYEGIELTGEDPASVD------ADELKEPLDRFDVEVSSLCGIYTEERDLSS-PDPNtRAAGIRYLKECID 90 
                                       789******************8......7******************99998887664.444588889********* PP

                                       HHHHHTBSEEEEEBCC.GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHHHH CS
                      AP_endonuc_2  78 laaaLGapllvlhpGt.agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd..eelarlldav 151
                                       laaa++a+++ ++p+     +p+ ++ee w+++++s++e+adya+kegv la+E++++ ++++++  e+++ l ++v
  gi|300713127|ref|YP_003738939.1|  91 LAAAVDAEIVGVGPSPvNKIYPDADREEEWQLAIDSIRECADYAAKEGVVLAIEPWNRYETYFINrlEQAVTLAEDV 167
                                       *************99775678999999************************************************** PP

                                       TTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.EESS CS
                      AP_endonuc_2 152 dspnvgvclDtgHlliaeedvddalraladrikhvHikDakg 193
                                       d++nvg+  D +H++i+ee + +alr+  d++ hvH + + +
  gi|300713127|ref|YP_003738939.1| 168 DRDNVGIRADLFHMNIEEESPVRALREARDHLVHVHGAGTTR 209
                                       ************************************966665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.17
                                       C.....HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHH CS
                      AP_endonuc_2  25 l.....sdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraie 77 
                                       +     ++e+                                       +++++ra +
  gi|300713127|ref|YP_003738939.1| 259 AfydqyTEEA---------------------------------------IEEVRRAWD 277
                                       0333333333.......................................333333333 PP

>> AP_endonuc_2_N  AP endonuclease family 2 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.25   1.5e+03       2      16 ..      16      30 ..      15      31 .. 0.81
   2 ?   12.7   0.3   1.3e-05     0.077       1      21 [.     218     238 ..     218     279 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.25
                    AP_endonuc_2_N  2 wkdifsaLrqiGYdg 16
                                      +++ + + +++GY+g
  gi|300713127|ref|YP_003738939.1| 16 FEEGIERVAKYGYEG 30
                                      7777888899***98 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.3e-05
                    AP_endonuc_2_N   1 dwkdifsaLrqiGYdgplSiE 21 
                                       dw+++  +L++iGYdg +  E
  gi|300713127|ref|YP_003738939.1| 218 DWEEVAATLQAIGYDGYITFE 238
                                       8***************99877 PP

>> Ferredoxin_N  N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.27   1.6e+03       4      28 ..     117     141 ..     115     144 .. 0.85
   2 ?   12.5   0.2     2e-05      0.12       7      56 ..     219     271 ..     215     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.27
                      Ferredoxin_N   4 geeweeeleemLddteYDaeLGlem 28 
                                       +eew+  ++++ + ++Y a+ G+ +
  gi|300713127|ref|YP_003738939.1| 117 EEEWQLAIDSIRECADYAAKEGVVL 141
                                       689*******999999999888765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2e-05
                      Ferredoxin_N   7 weeeleemLddteYDaeLGlem...arDAvrvtkGeLsea.eFhekYheaVlaE 56 
                                       wee + ++L+  +YD  +  e+   a D  rv +G   ea +F+++Y e+ ++E
  gi|300713127|ref|YP_003738939.1| 219 WEE-VAATLQAIGYDGYITFELlpaAADPFRVLEGGKDEAaAFYDQYTEEAIEE 271
                                       654.56789999999999988656599*******99888537********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2323.26
//
Query:       gi|300713128|ref|YP_003738940.1|  [L=342]
Description: ABC-type sugar transport system periplasmic component-like protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-33  116.0   0.2    2.6e-33  115.7   0.2    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
    4.1e-05   23.4   0.8      0.029   14.0   0.1    2.0  2  Peripla_BP_6  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.2   2.9e-37   2.6e-33       1     257 [.      44     301 ..      44     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 2.9e-37
                                       EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHH CS
                      Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkak 77 
                                       +++v+++   ++ +  r glee  +elg++v+ v+ ae +a++Q ++ie++ ++ vd++i  pvd++a a+a  + +
  gi|300713128|ref|YP_003738940.1|  44 VAIVFHHLKTAWTELQRRGLEERFDELGVTVDGVYGAEFNASKQTEIIEKLSDNEVDAVISIPVDTAATADAYRAVA 120
                                       6899999999******************************************************************* PP

                                       HTT-EEEEESTT.GCTTT-CEE..EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH CS
                      Peripla_BP_4  78 aaGIpVvafdsd.dapsgerla..yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke 151
                                       +aGI  v++d   d  +++r++  +v+ dne +G ++++ l e+lg+  g+v +++ ++    + +r+ g+r+vl+ 
  gi|300713128|ref|YP_003738940.1| 121 DAGIELVFMDNVpDGFEHPRDYagCVSSDNEGVGIVAGRFLREFLGK--GDVGMITFDAPFYVTDQRESGVRDVLRN 195
                                       ************988888888877**********************4..9*************************** PP

                                       -TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEE.EESSCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHH CS
                      Peripla_BP_4 152 ypgikivaevaganwdaekaqqalealltanp.ldgi.laandgmaegalealeaaglagkvvvtgqDatpealeai 226
                                         +++i ae  ++ +d+++ ++ ++++   np l+g+ ++ +d +a +a +a+e+ g++  v +t+ ++++ ++e i
  gi|300713128|ref|YP_003738940.1| 196 SDDVTIAAE--EGFTDPDDVYDLAQNMVVTNPnLNGMfVSWSDPPAVQATRAVEDVGRSEFV-ITTTGLSSRTVENI 269
                                       77*****95..668***************885599986889999999**********99877.************** PP

                                       .HTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
                      Peripla_BP_4 227 .kdGtidatvaqdpyelgyaavelavallkGk 257
                                          G i++t aq py++g   + ++ ++l G+
  gi|300713128|ref|YP_003738940.1| 270 aLGGPIKGTGAQFPYQQGIIEANMVGQALLGE 301
                                       4556688***********99999988888776 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   3.2e-06     0.029     143     217 ..      51     126 ..      25     145 .. 0.83
   2 !    8.0   0.1   0.00022         2     124     249 ..     156     284 ..     135     298 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-06
                                       ESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-SEEEEES.SHHHHHHHHHHHHHTT-SS CS
                      Peripla_BP_6 143 adyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagadavllag.tgadlaallkaaaeaGlda 217
                                         +a+    +++l++ + ++G++v g +  +++++ +++++ ++ +  +dav+ +  ++a++a +++a+a+aG+  
  gi|300713128|ref|YP_003738940.1|  51 LKTAWTELQRRGLEERFDELGVTVDGVYGAEFNASKQTEIIEKLSDNEVDAVISIPvDTAATADAYRAVADAGIEL 126
                                       33899999999************9899999*********************766643999999**********986 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00022
                                       HHHHHHHHHTTSCEEEEEEESSHHH..HHHHHHHHHHHHCC.TEEEEEEEEE-TTHHHHHHHHHHHHTTT-SE..EE CS
                      Peripla_BP_6 124 alveylakelggkkvalvyadyafg..regiaalkaaakaa.Ggevvgeepvplgttdfsaqvlqikaagada..vl 195
                                        ++++l++ lg+  v++++ d +f   ++ + +++++++ + ++++ +ee ++ + +d+  +++++   +++    +
  gi|300713128|ref|YP_003738940.1| 156 VAGRFLREFLGKGDVGMITFDAPFYvtDQRESGVRDVLRNSdDVTIAAEEGFT-DPDDVYDLAQNMVVTNPNLngMF 231
                                       4455555558999********9998634455599*****99789999999999.778***************99755 PP

                                       EESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHH.HHHTTEEEEESC CS
                      Peripla_BP_6 196 lagtgadlaallkaaaeaGldakrillvswsgseedlkalgg.eaaegvlavtpy 249
                                       ++   ++++++ +a++++G +   + + ++++s  +++ ++  +  +g+ a  py
  gi|300713128|ref|YP_003738940.1| 232 VSWSDPPAVQATRAVEDVGRSE--FVITTTGLSSRTVENIALgGPIKGTGAQFPY 284
                                       55555679*************5..6677888888888777552347777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2420.97
//
Query:       gi|300713129|ref|YP_003738941.1|  [L=258]
Description: transcriptional regulator, IclR family protein [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-29  102.2   0.0    4.2e-29  101.0   0.0    1.6  2  IclR            Bacterial transcriptional regulator
    3.3e-12   46.0   0.1      6e-12   45.2   0.1    1.5  1  HTH_IclR        IclR helix-turn-helix domain
    1.7e-06   27.8   0.1    4.3e-06   26.5   0.1    1.7  1  MarR_2          MarR family
    4.9e-06   26.4   0.0      1e-05   25.4   0.0    1.4  1  MarR            MarR family
    1.9e-05   24.1   0.0    4.1e-05   23.1   0.0    1.6  1  HTH_24          Winged helix-turn-helix DNA-binding
    4.3e-05   23.9   0.1    9.8e-05   22.8   0.1    1.6  1  HTH_27          Winged helix DNA-binding domain
    6.2e-05   23.0   0.1    0.00019   21.4   0.0    1.9  2  HTH_20          Helix-turn-helix domain
    7.1e-05   22.6   0.0    0.00013   21.7   0.0    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
    0.00017   21.7   0.4    0.00057   20.0   0.1    2.0  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0014   18.5   0.0     0.0035   17.2   0.0    1.6  1  TrmB            Sugar-specific transcriptional regulator TrmB
     0.0088   16.0   0.5      0.021   14.8   0.0    1.9  2  HTH_11          HTH domain
  ------ inclusion threshold ------
      0.018   15.2   0.2      0.056   13.6   0.0    1.8  2  HTH_34          Winged helix DNA-binding domain
      0.049   13.6   0.1       0.13   12.3   0.0    1.8  2  HTH_45          Winged helix-turn-helix
      0.073   13.7   0.0       0.13   12.9   0.0    1.4  1  RPA_C           Replication protein A C terminal
       0.12   12.5   0.1       0.27   11.3   0.0    1.6  2  z-alpha         Adenosine deaminase z-alpha domain
       0.14   12.3   0.0       0.26   11.4   0.0    1.4  1  FeoC            FeoC like transcriptional regulator


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.3   7.1e+03      51      70 ..      28      47 ..      15      53 .. 0.66
   2 !  101.0   0.0   3.8e-32   4.2e-29       6     127 ..     116     236 ..     111     238 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.3
                                      -SHHHHHHHHHHHHHHTSEE CS
                              IclR 51 tdpeeLleeLakvReqGyav 70
                                       ++   +++L +  e+Gy  
  gi|300713129|ref|YP_003738941.1| 28 MSKSGVHKQLTTLVEEGYVT 47
                                      45556677777777777765 PP

  == domain 2  score: 101.0 bits;  conditional E-value: 3.8e-32
                                       TTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEE CS
                              IclR   6 vsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrci 82 
                                        +++G  + l+++a+GKa+L+ l++e++e+++++ el + te Titd+ eL +eL+++ ++G+a++++E+  g+r++
  gi|300713129|ref|YP_003738941.1| 116 DVNVGDWISLHSSAAGKAILSELPDEYRERVIKQ-ELPPKTEFTITDETELAQELDEIQANGVAFEDQENVRGMRSV 191
                                       5789******************************.****************************************** PP

                                       EEEEE-TTSSEEEEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHH CS
                              IclR  83 AapifdasgevvaAvsvsgptarlteeelkeellalvreaArkis 127
                                       +api  + g+v++Av+vsgp + lt+++++++l  lvr++ + i+
  gi|300713129|ref|YP_003738941.1| 192 GAPILSSDGDVLGAVAVSGPLSLLTDDRFRNDLPGLVRQTKNFIE 236
                                       ****************************************98776 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.1   5.4e-15     6e-12       3      50 ..       2      48 ..       1      50 [. 0.96

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 5.4e-15
                                      HHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
                          HTH_IclR  3 dRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                                      +Ra+++++al+e +++ +++el++r++++kS vh  L tLve+Gyv++
  gi|300713129|ref|YP_003738941.1|  2 ERAFSVIRALRELDGA-GVTELSKRLDMSKSGVHKQLTTLVEEGYVTK 48
                                      7**************8.9****************************86 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   3.8e-09   4.3e-06       8      56 ..       5      51 ..       3      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.8e-09
                                      HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
                            MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                                      + v+ aL+  +g    v+el +rl++sks v++ l  Lv+ G+v++ ++
  gi|300713129|ref|YP_003738941.1|  5 FSVIRALRELDG--AGVTELSKRLDMSKSGVHKQLTTLVEEGYVTKARD 51
                                      679999999999..89****************************99876 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   8.9e-09     1e-05       5      52 ..       4      51 ..       2      52 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.9e-09
                                      HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
                              MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsks 52
                                       f+++r l+e +++ v+eL k+l +sks v ++l++L+++G++++ ++
  gi|300713129|ref|YP_003738941.1|  4 AFSVIRALRELDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTKARD 51
                                      699*****************************************9887 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.6e-08   4.1e-05       8      48 .]       7      47 ..       2      47 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.6e-08
                            HTH_24  8 ILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                                      ++++L++  +   +eL++rl++S+s v+++l  L+eeG+++
  gi|300713129|ref|YP_003738941.1|  7 VIRALRELDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVT 47
                                      67777777788889*************************96 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   8.8e-08   9.8e-05       8      54 ..       7      52 ..       3      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 8.8e-08
                            HTH_27  8 vLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgde 54
                                      v++ +r +++++  ++l++rl++++s +++ l  L+e G+v++ +de
  gi|300713129|ref|YP_003738941.1|  7 VIRALR-ELDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTKARDE 52
                                      556666.9999999***************************999998 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.7e-07   0.00019      15      59 ..       7      51 ..       4      53 .. 0.92
   2 ?   -2.7   0.0         6   6.7e+03      28      35 ..     163     170 ..     145     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.7e-07
                                      HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
                            HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                                      + raL++ +g+ ++el +rld+sk+ ++++L +L+e g+v+  r 
  gi|300713129|ref|YP_003738941.1|  7 VIRALRELDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTKARD 51
                                      77888888********************************98885 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6
                                       HHHHHHHT CS
                            HTH_20  28 selaerld 35 
                                       +ela++ld
  gi|300713129|ref|YP_003738941.1| 163 TELAQELD 170
                                       67888775 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.2e-07   0.00013       8      47 .]       8      48 ..       5      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.2e-07
                                      HHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                             HTH_5  8 LklLae.gelcvcelaeelglsqstvShHLkkLreaGLVek 47
                                      +++L+e   + v+el++ l++s+s v  +L  L e+G+V+k
  gi|300713129|ref|YP_003738941.1|  8 IRALRElDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTK 48
                                      67888877788****************************87 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1     5e-07   0.00057      19      54 ..      13      48 ..       6      52 .. 0.87
   2 ?   -3.1   0.0       8.4   9.4e+03      13      39 ..     104     130 ..     103     134 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5e-07
                                      HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
                    Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyvey 54
                                      e + +++++l++rL+ s+s V + l  L ++Gyv  
  gi|300713129|ref|YP_003738941.1| 13 ELDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTK 48
                                      6777999***************************76 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.4
                                       HHHHHHHHSSB-HHHHHHHHTS-HHHH CS
                    Fe_dep_repress  13 IYtlseekkvvktkdlaerLnvspssV 39 
                                       +Y ++++++v++  ++   +  + s +
  gi|300713129|ref|YP_003738941.1| 104 VYVAEGDNAVATDVNVGDWISLHSSAA 130
                                       788888999988877777666666655 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.1e-06    0.0035      16      60 ..      10      54 ..       4      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.1e-06
                                      HHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTT CS
                              TrmB 16 aLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgrpk 60
                                      aL +l+ a ++e++++l+ ++s v + L  L++ G+V++ + +++
  gi|300713129|ref|YP_003738941.1| 10 ALRELDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTKARDEYR 54
                                      566788999******************************998866 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.9e-05     0.021       1      44 [.       3      45 ..       3      53 .. 0.86
   2 ?   -3.3   0.1         8   8.9e+03      20      26 ..     164     170 ..     163     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
                            HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                                      R++++++ L+e +g     eL+++L++S++ v++ + +L e g+
  gi|300713129|ref|YP_003738941.1|  3 RAFSVIRALRELDG-AGVTELSKRLDMSKSGVHKQLTTLVEEGY 45
                                      66778888888888.5778********************99985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8
                            HTH_11  20 eLAeeLn 26 
                                       eLA+eL+
  gi|300713129|ref|YP_003738941.1| 164 ELAQELD 170
                                       8***996 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     5e-05     0.056       3      46 ..       5      48 ..       4      54 .. 0.93
   2 ?   -2.2   0.1       4.3   4.8e+03      54      64 ..     152     162 ..     145     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5e-05
                            HTH_34  3 lavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYiev 46
                                      ++v+  L + d a  +el++ l ++++   ++l++L + gY++ 
  gi|300713129|ref|YP_003738941.1|  5 FSVIRALRELDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTK 48
                                      789999***********************************985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.3
                            HTH_34  54 kprtllriTpe 64 
                                        p+t ++iT+e
  gi|300713129|ref|YP_003738941.1| 152 PPKTEFTITDE 162
                                       58999999987 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011      0.13      18      58 ..      15      55 ..       5      74 .. 0.91
   2 ?   -3.2   0.0       7.6   8.6e+03      53      69 ..     154     169 ..     147     174 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                            HTH_45 18 geakkTkimykanLsykllnkYLdmLvekglikkskekYvl 58
                                      ++a  T++ ++ ++s + ++k L +Lve+g+++k  ++Y+l
  gi|300713129|ref|YP_003738941.1| 15 DGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTKARDEYRL 55
                                      68899**********************************98 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.6
                            HTH_45  53 kekYvlTekGlellekl 69 
                                       k+++++T++  el ++l
  gi|300713129|ref|YP_003738941.1| 154 KTEFTITDE-TELAQEL 169
                                       678888887.4455555 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00012      0.13      57     103 ..       7      52 ..       2      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
                                       HHHH.SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHHTTSEEESSST CS
                             RPA_C  57 likqspeseeGvhvdeiaqklrlsvndvkqavdeLsneGiiYsTiDd 103
                                       +i+   ++ +G  v e++++l +s++ v + + +L++eG++  + D+
  gi|300713129|ref|YP_003738941.1|   7 VIRA-LRELDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTKARDE 52 
                                       5666.788899*****************************9888887 PP

>> z-alpha  Adenosine deaminase z-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.27       8      54 ..       6      49 ..       1      52 [. 0.86
   2 ?   -3.4   0.0       9.5   1.1e+04      42      50 ..      93     101 ..      91     104 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
                                      HHHHHHHHC-TTCECCHHHHHHHHCC-HHHHHHHHHHHHHTTSEEEE CS
                           z-alpha  8 kilelLeelgekkaatalalergLstpkreiNrvLydlerkgkvyre 54
                                       ++ +L+el+ + ++t+l + +++s  k  + ++L  l ++g v + 
  gi|300713129|ref|YP_003738941.1|  6 SVIRALRELD-GAGVTELSKRLDMS--KSGVHKQLTTLVEEGYVTKA 49
                                      68899*****.99999999988888..9**************99886 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.5
                                       HHHHHHTTS CS
                           z-alpha  42 Lydlerkgk 50 
                                       L  +erk+ 
  gi|300713129|ref|YP_003738941.1|  93 LVAMERKDA 101
                                       788999986 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.26       9      48 ..      11      50 ..       6      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
                              FeoC  9 leergrvslkeLsrhfkaspealeamLeqwvrkGrvekva 48
                                      l+e   + + eLs+++++s++ + + L ++v  G v+k  
  gi|300713129|ref|YP_003738941.1| 11 LRELDGAGVTELSKRLDMSKSGVHKQLTTLVEEGYVTKAR 50
                                      5566678899**************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1894.21
//
Query:       gi|300713130|ref|YP_003738942.1|  [L=295]
Description: hydrolase [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-20   74.0   0.0    2.1e-20   73.4   0.0    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold
    7.2e-13   49.6   0.4    9.4e-13   49.3   0.4    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.1e-06   27.2   0.3    4.5e-06   26.1   0.1    1.6  2  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.45   10.9   0.0    1.8  1  EHN            Epoxide hydrolase N terminus


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   4.8e-24   2.1e-20       2     116 ..      37     144 ..      36     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 4.8e-24
                                       EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEE CS
                     Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlv 78 
                                       +l++lhG p+++++w++  l+p L + +++v+++D+rG+g S+       +d++t  + dd  ++++al+ d+ ++v
  gi|300713130|ref|YP_003738942.1|  37 PLLLLHGVPKTAYYWRK--LVPLLTE-DYEVVVPDQRGFGDSEMTDGG--HDMET--MGDDAAKLMEALDHDEYHVV 106
                                       89***************..******9.***************998888..99999..******************** PP

                                       EETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHH CS
                     Abhydrolase_1  79 GhSmGGmialayaaeyperVkalvllgaidpaasliea 116
                                       G ++G + +la+a +yp+rVk l +l+ i++ + l e+
  gi|300713130|ref|YP_003738942.1| 107 GEDWGATAGLALAGQYPDRVKTLSFLEMIMDGFGLQEW 144
                                       **********************9999884444444443 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.4   2.1e-16   9.4e-13       1     219 [.      38     288 ..      38     289 .. 0.62

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 2.1e-16
                                       EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH..C.HHHHHHHCCTT..TTSEEEEEETC CS
                     Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled..l.adlaalldelaagggpvvlvGHSl 74 
                                       +lllHG + +a+ W+   L++ll+++++v++pD +G+G+s+  + +++     +d a l ++l  ++++ ++vG ++
  gi|300713130|ref|YP_003738942.1|  38 LLLLHGVPKTAYYWR--KLVPLLTEDYEVVVPDQRGFGDSEMTDGGHDMetMgDDAAKLMEAL--DHDEYHVVGEDW 110
                                       79****777777777..*********************8866665554422325557788888..59999******* PP

                                       HHHHHHHHHHCC...EE..EEES-..----TTT...........S----TTHHHHHHTT-CCCCHCCH....S-HSC CS
                     Abhydrolase_6  75 GGalalaaapla.lvvg..vlldppptalpagl...........laaalelllallallrllawlsre....plprl 133
                                       G++ +la+a +  ++v+   +l+    ++++gl           ++ ++ ++  ++a+  ++++l ++    +++ +
  gi|300713130|ref|YP_003738942.1| 111 GATAGLALAGQYpDRVKtlSFLEM--IMDGFGLqewsflteenvGNQRWLWHINFYAVPDFPEMLIGGnereYFG-H 184
                                       ***999944444644445755555..3333333444556666666666666667777666666664444443333.6 PP

                                       CCC....HHH.....CCCCHCHCCCGHHHHCCHHCHTT............CCHHTT-TTGCEEECTT-CHHHHCHHC CS
                     Abhydrolase_6 134 fla....ded.....adaawrarlarlaallaglgllp............aaawadlpvpllvlggeDplvprller 189
                                       f++    d++     a +++++ ++ +  l+++l  ++             ++   +pv+  v  g+   + + +e 
  gi|300713130|ref|YP_003738942.1| 185 FFKvechDPAavpdhAIEEYVRSFSQPGGLQNMLQVYRnpfknaeyfegmTDDQLEMPVLA-V--GSTHFIGEEVET 258
                                       6664433333333333666666666666666655533222333333334456666666666.6..777777777777 PP

                                       CCH.STTEEETCE...SSS-HHHHSHHHHHH CS
                     Abhydrolase_6 190 lla.qagarlpvvlpgaGHlphleepdevae 219
                                        +  +a  ++  v  ++GH + +e p+e+++
  gi|300713130|ref|YP_003738942.1| 259 QMEyVAEDVT-GVTLDWGHQLAEECPEELVD 288
                                       7777566666.56678999888889999987 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.38   1.7e+03     199     229 ..       2      32 ..       1      38 [. 0.85
   2 !   26.1   0.1     1e-09   4.5e-06       7     103 ..      38     128 ..      34     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.38
                       Hydrolase_4 199 GeaDkvvdpeasrelyerlgskdktlklypg 229
                                       +e+ ++vd+e+ r ++++ + + ++l++y  
  gi|300713130|ref|YP_003738942.1|   2 AERQTIVDHEGDRVTHRKKRVNGVRLHYYTA 32 
                                       6777899999999999999999999999975 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 1e-09
                       Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGh 83 
                                       ++l+HG+  ++    +l+  L  ++++v+  D+rG+G se   g  ++++++ dD+a+++e++     + +  ++G+
  gi|300713130|ref|YP_003738942.1|  38 LLLLHGVPKTAYYWRKLVPLL-TEDYEVVVPDQRGFGDSEMTDG-GHDMETMGDDAAKLMEALD----HDEYHVVGE 108
                                       578888888888888887755.679***************8888.789************9999....344679*** PP

                       Hydrolase_4  84 SmGGliallyllrypdkvag 103
                                        +G++  l+++ +ypd+v+ 
  gi|300713130|ref|YP_003738942.1| 109 DWGATAGLALAGQYPDRVKT 128
                                       ****************9875 PP

>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001      0.45      68     106 ..      15      49 ..       8      51 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                               EHN  68 fpqfkteidgldihFihlrsakpdaiPllllhGWPgsfl 106
                                       +++ k +++g+++h+  + s      PllllhG P++++
  gi|300713130|ref|YP_003738942.1|  15 VTHRKKRVNGVRLHYYTAGS----GEPLLLLHGVPKTAY 49 
                                       6677888999******9998....47*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2130.85
//
Query:       gi|300713131|ref|YP_003738943.1|  [L=114]
Description: hypothetical protein HacjB3_19073 [Halalkalicoccus jeotgali B3]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       158  (0.00881254); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 822.01
//
[ok]
