# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DDE_Tnp_1 PF01609.21 gi|300712407|ref|YP_003738220.1| - 1.3e-06 28.2 0.9 1.1e-05 25.1 0.9 2.1 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|300712407|ref|YP_003738220.1| - 1.8e-06 27.9 0.0 4.6e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_4 PF13701.6 gi|300712407|ref|YP_003738220.1| - 0.00086 17.7 0.3 0.04 12.2 0.0 2.2 2 0 0 2 2 2 2 Transposase DDE domain group 1 Resolvase PF00239.21 gi|300712408|ref|YP_003738221.1| - 4.7e-35 120.8 1.4 6.5e-35 120.4 1.4 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_24 PF13412.6 gi|300712409|ref|YP_003738222.1| - 6.9e-15 54.3 0.1 1.3e-14 53.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|300712409|ref|YP_003738222.1| - 3.2e-13 49.3 1.6 4.7e-13 48.7 0.1 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|300712409|ref|YP_003738222.1| - 2e-05 24.4 0.0 3.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|300712409|ref|YP_003738222.1| - 6e-05 22.7 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|300712409|ref|YP_003738222.1| - 6.5e-05 22.9 0.0 0.00015 21.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|300712409|ref|YP_003738222.1| - 0.00012 22.2 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|300712409|ref|YP_003738222.1| - 0.00018 21.3 0.0 0.00034 20.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|300712409|ref|YP_003738222.1| - 0.0012 18.6 0.0 0.0025 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|300712409|ref|YP_003738222.1| - 0.0015 18.4 0.0 0.003 17.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|300712409|ref|YP_003738222.1| - 0.0021 17.9 0.0 0.0048 16.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|300712409|ref|YP_003738222.1| - 0.011 15.5 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|300712409|ref|YP_003738222.1| - 0.015 15.2 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Tfb5 PF06331.12 gi|300712409|ref|YP_003738222.1| - 0.016 15.2 0.1 0.077 13.0 0.0 2.1 2 0 0 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 HTH_29 PF13551.6 gi|300712409|ref|YP_003738222.1| - 0.021 14.9 0.0 0.044 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix zf-C3HC4_3 PF13920.6 gi|300712409|ref|YP_003738222.1| - 0.025 14.4 1.6 0.054 13.4 1.6 1.5 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-FCS PF06467.14 gi|300712409|ref|YP_003738222.1| - 0.047 13.6 3.9 0.078 12.9 3.9 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Fe_dep_repress PF01325.19 gi|300712409|ref|YP_003738222.1| - 0.047 13.9 0.0 0.096 12.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|300712409|ref|YP_003738222.1| - 0.054 14.0 0.2 0.26 11.8 0.1 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|300712409|ref|YP_003738222.1| - 0.056 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Arc_trans_TRASH PF08394.10 gi|300712409|ref|YP_003738222.1| - 0.062 13.6 3.7 0.1 12.9 3.7 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain LexA_DNA_bind PF01726.16 gi|300712409|ref|YP_003738222.1| - 0.071 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HHH_6 PF14579.6 gi|300712409|ref|YP_003738222.1| - 0.1 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif TLP1_add_C PF18313.1 gi|300712409|ref|YP_003738222.1| - 0.11 12.5 0.1 0.41 10.6 0.1 2.0 1 1 0 1 1 1 0 Thiolase-like protein type 1 additional C-terminal domain Sigma70_r4_2 PF08281.12 gi|300712409|ref|YP_003738222.1| - 0.13 12.0 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 ATPase-cat_bd PF12156.8 gi|300712409|ref|YP_003738222.1| - 0.25 12.1 4.0 0.53 11.1 4.0 1.6 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase ADD_ATRX PF17981.1 gi|300712409|ref|YP_003738222.1| - 6.9 6.6 7.4 9.2 6.2 0.2 2.4 1 1 1 2 2 2 0 Cysteine Rich ADD domain FeoC PF09012.10 gi|300712409|ref|YP_003738222.1| - 8.2 6.6 0.0 8.2 6.6 0.0 2.8 2 1 1 3 3 3 0 FeoC like transcriptional regulator DUF326 PF03860.16 gi|300712410|ref|YP_003738223.1| - 4.8e-05 23.2 25.5 0.0025 17.7 5.8 5.5 5 1 0 5 5 5 3 Domain of Unknown Function (DUF326) FUSC PF04632.12 gi|300712410|ref|YP_003738223.1| - 0.054 12.0 0.5 0.059 11.9 0.5 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Pentapeptide PF00805.22 gi|300712411|ref|YP_003738224.1| - 4.2e-19 67.8 23.8 2.8e-09 36.4 5.6 3.3 2 1 1 3 3 3 3 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|300712411|ref|YP_003738224.1| - 3.8e-11 43.0 0.8 1.6e-09 37.8 0.9 2.2 1 1 0 1 1 1 1 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|300712411|ref|YP_003738224.1| - 1.6e-09 37.8 8.6 0.0015 18.6 5.6 3.0 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|300712412|ref|YP_003738225.1| - 3.8e-17 61.6 0.3 2.1e-08 33.6 0.0 2.1 1 1 1 2 2 2 2 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|300712412|ref|YP_003738225.1| - 0.00016 21.8 0.0 0.00017 21.6 0.0 1.1 1 0 0 1 1 1 1 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|300712412|ref|YP_003738225.1| - 0.00027 21.0 0.0 0.12 12.6 0.0 2.2 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|300712413|ref|YP_003738226.1| - 1.4e-10 41.0 2.7 1.4e-10 41.0 2.7 2.0 2 0 0 2 2 2 1 Ion channel DUF63 PF01889.17 gi|300712414|ref|YP_003738227.1| - 2.7e-06 27.8 1.0 3.6e-06 27.4 1.0 1.2 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF2788 PF10981.8 gi|300712414|ref|YP_003738227.1| - 1.2 9.2 0.0 1.2 9.2 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2788) Methyltransf_31 PF13847.6 gi|300712415|ref|YP_003738228.1| - 2.2e-21 76.3 0.0 2.6e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|300712415|ref|YP_003738228.1| - 1.1e-20 74.1 0.1 1.8e-20 73.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|300712415|ref|YP_003738228.1| - 4.7e-20 72.0 0.1 8.5e-20 71.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|300712415|ref|YP_003738228.1| - 1.1e-18 67.5 0.0 1.3e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|300712415|ref|YP_003738228.1| - 5e-17 62.5 0.0 6.9e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|300712415|ref|YP_003738228.1| - 1.4e-15 57.6 0.0 1.7e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|300712415|ref|YP_003738228.1| - 3.8e-15 56.2 0.0 5.3e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|300712415|ref|YP_003738228.1| - 4.7e-06 26.5 0.0 6.5e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MetW PF07021.12 gi|300712415|ref|YP_003738228.1| - 9.3e-05 22.1 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|300712415|ref|YP_003738228.1| - 0.0003 20.2 0.0 0.00038 19.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|300712415|ref|YP_003738228.1| - 0.0012 18.3 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase TPMT PF05724.11 gi|300712415|ref|YP_003738228.1| - 0.0038 16.9 0.0 0.011 15.4 0.0 1.7 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 gi|300712415|ref|YP_003738228.1| - 0.023 14.2 0.0 0.084 12.4 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|300712415|ref|YP_003738228.1| - 0.038 14.0 0.0 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|300712415|ref|YP_003738228.1| - 0.038 13.1 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin FtsJ PF01728.19 gi|300712415|ref|YP_003738228.1| - 0.046 13.8 0.0 0.15 12.1 0.0 1.6 1 1 0 2 2 2 0 FtsJ-like methyltransferase E1-E2_ATPase PF00122.20 gi|300712416|ref|YP_003738229.1| - 6.9e-51 172.3 2.2 6.9e-51 172.3 2.2 3.1 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|300712416|ref|YP_003738229.1| - 2.6e-37 129.2 6.0 4.2e-37 128.5 6.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|300712416|ref|YP_003738229.1| - 1.6e-05 24.8 0.4 0.0029 17.4 0.2 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|300712416|ref|YP_003738229.1| - 0.00065 19.8 0.1 0.009 16.1 0.1 2.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|300712416|ref|YP_003738229.1| - 0.0078 16.6 0.1 0.024 15.1 0.1 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase MTABC_N PF16185.5 gi|300712416|ref|YP_003738229.1| - 0.14 11.6 1.0 0.28 10.7 1.0 1.4 1 0 0 1 1 1 0 Mitochondrial ABC-transporter N-terminal five TM region Cu-oxidase_3 PF07732.15 gi|300712417|ref|YP_003738230.1| - 5.6e-39 132.8 0.2 3.7e-32 110.8 0.0 3.3 3 0 0 3 3 3 3 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|300712417|ref|YP_003738230.1| - 1.9e-38 131.3 6.1 2.8e-23 82.2 3.3 4.9 3 2 0 3 3 3 3 Multicopper oxidase Cu-oxidase PF00394.22 gi|300712417|ref|YP_003738230.1| - 4.6e-25 88.6 0.0 2.9e-22 79.5 0.0 2.4 2 0 0 2 2 2 2 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|300712417|ref|YP_003738230.1| - 4.4e-05 23.5 0.0 0.0084 16.2 0.0 3.4 3 0 0 3 3 3 1 Cupredoxin-like domain SHOCT PF09851.9 gi|300712418|ref|YP_003738231.1| - 8.4e-09 34.9 3.4 1.1e-08 34.5 3.4 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|300712418|ref|YP_003738231.1| - 2.2e-05 24.4 2.3 2.2e-05 24.4 2.3 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) Phage_holin_3_6 PF07332.11 gi|300712418|ref|YP_003738231.1| - 0.046 13.8 5.9 0.062 13.3 5.9 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4381 PF14316.6 gi|300712418|ref|YP_003738231.1| - 0.2 11.9 0.0 0.2 11.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) DUF2207 PF09972.9 gi|300712418|ref|YP_003738231.1| - 0.33 9.6 1.1 0.36 9.6 1.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3377 PF11857.8 gi|300712418|ref|YP_003738231.1| - 0.69 9.9 2.7 0.5 10.3 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3377) RseC_MucC PF04246.12 gi|300712418|ref|YP_003738231.1| - 0.89 9.5 4.4 1.3 9.0 4.3 1.3 1 1 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF4051 PF13260.6 gi|300712418|ref|YP_003738231.1| - 1.2 8.9 0.0 1.2 8.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4051) Tad PF13400.6 gi|300712418|ref|YP_003738231.1| - 6.6 7.1 13.7 8.5 6.8 3.8 2.5 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF302 PF03625.14 gi|300712419|ref|YP_003738232.1| - 1.6e-26 92.0 0.0 2.4e-26 91.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Lyase_8_C PF02884.17 gi|300712419|ref|YP_003738232.1| - 0.074 13.5 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide lyase family 8, C-terminal beta-sandwich domain HMA PF00403.26 gi|300712420|ref|YP_003738233.1| - 2.7e-16 59.8 0.2 2.9e-16 59.6 0.2 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain HTH_AsnC-type PF13404.6 gi|300712421|ref|YP_003738234.1| - 1.6e-15 56.7 0.3 3.2e-15 55.7 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|300712421|ref|YP_003738234.1| - 2e-15 56.1 0.1 3.1e-15 55.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|300712421|ref|YP_003738234.1| - 5.1e-06 26.3 0.0 8.5e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|300712421|ref|YP_003738234.1| - 2.5e-05 24.0 0.0 4.1e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|300712421|ref|YP_003738234.1| - 2.8e-05 24.1 1.0 4.4e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|300712421|ref|YP_003738234.1| - 3.7e-05 23.5 0.6 9.3e-05 22.2 0.1 1.9 3 0 0 3 3 2 1 MarR family HTH_IclR PF09339.10 gi|300712421|ref|YP_003738234.1| - 0.0014 18.4 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|300712421|ref|YP_003738234.1| - 0.0019 18.3 0.0 0.0048 17.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|300712421|ref|YP_003738234.1| - 0.0025 17.7 0.0 0.006 16.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|300712421|ref|YP_003738234.1| - 0.0036 17.5 0.0 0.012 15.8 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|300712421|ref|YP_003738234.1| - 0.007 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Arc_trans_TRASH PF08394.10 gi|300712421|ref|YP_003738234.1| - 0.008 16.5 0.7 0.015 15.6 0.7 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain LIM PF00412.22 gi|300712421|ref|YP_003738234.1| - 0.046 13.9 2.9 0.11 12.8 2.9 1.6 1 0 0 1 1 1 0 LIM domain HTH_Crp_2 PF13545.6 gi|300712421|ref|YP_003738234.1| - 0.05 13.6 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain zinc_ribbon_10 PF10058.9 gi|300712421|ref|YP_003738234.1| - 0.053 13.2 0.5 0.12 12.2 0.3 1.7 2 0 0 2 2 1 0 Predicted integral membrane zinc-ribbon metal-binding protein ATPase-cat_bd PF12156.8 gi|300712421|ref|YP_003738234.1| - 0.058 14.1 3.7 0.1 13.4 3.7 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase LexA_DNA_bind PF01726.16 gi|300712421|ref|YP_003738234.1| - 0.068 12.9 0.0 0.22 11.3 0.0 1.9 2 1 0 2 2 1 0 LexA DNA binding domain Zn_ribbon_recom PF13408.6 gi|300712421|ref|YP_003738234.1| - 0.15 12.6 0.6 0.31 11.6 0.6 1.4 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain HECT_2 PF09814.9 gi|300712421|ref|YP_003738234.1| - 0.28 10.0 1.6 0.34 9.7 0.0 1.8 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Zn-ribbon_8 PF09723.10 gi|300712421|ref|YP_003738234.1| - 2.5 8.3 6.8 30 4.8 3.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain E1-E2_ATPase PF00122.20 gi|300712422|ref|YP_003738235.1| - 8.9e-50 168.7 2.8 1.1e-49 168.4 1.4 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|300712422|ref|YP_003738235.1| - 6.8e-43 147.4 14.8 2.4e-42 145.6 14.8 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|300712422|ref|YP_003738235.1| - 1.1e-28 99.4 0.1 9.5e-13 48.4 0.0 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|300712422|ref|YP_003738235.1| - 1e-05 25.5 0.9 0.016 14.9 0.6 2.6 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|300712422|ref|YP_003738235.1| - 0.0012 19.2 0.2 0.003 18.0 0.2 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DoxX PF07681.12 gi|300712424|ref|YP_003738237.1| - 4.5e-08 33.6 8.0 1.5e-07 31.9 8.0 1.9 1 1 0 1 1 1 1 DoxX DoxD PF04173.13 gi|300712424|ref|YP_003738237.1| - 0.086 12.7 4.8 0.18 11.7 4.8 1.6 1 1 0 1 1 1 0 TQO small subunit DoxD ArsP_1 PF03773.13 gi|300712425|ref|YP_003738238.1| - 8.4e-58 195.8 14.2 1.1e-57 195.4 14.2 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|300712425|ref|YP_003738238.1| - 4.8e-16 58.6 7.7 2.2e-11 43.7 2.0 2.3 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.14 gi|300712425|ref|YP_003738238.1| - 7.1e-06 25.9 1.8 0.014 15.3 0.2 2.4 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif zf-HIT PF04438.16 gi|300712425|ref|YP_003738238.1| - 0.068 13.1 0.4 0.76 9.7 0.0 2.2 2 0 0 2 2 2 0 HIT zinc finger RPAP2_Rtr1 PF04181.13 gi|300712425|ref|YP_003738238.1| - 0.21 11.9 0.7 14 6.0 0.1 2.2 2 0 0 2 2 2 0 Rtr1/RPAP2 family PAP2 PF01569.21 gi|300712425|ref|YP_003738238.1| - 0.5 10.1 9.5 0.87 9.4 1.7 3.2 2 1 0 2 2 2 0 PAP2 superfamily DUF2256 PF10013.9 gi|300712425|ref|YP_003738238.1| - 4.2 7.6 6.8 73 3.6 0.0 3.2 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF2116 PF09889.9 gi|300712425|ref|YP_003738238.1| - 4.2 7.4 9.3 12 6.0 0.2 4.0 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Methyltransf_25 PF13649.6 gi|300712427|ref|YP_003738240.1| - 6.2e-16 58.9 0.0 5e-15 56.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|300712427|ref|YP_003738240.1| - 4.8e-14 52.8 0.0 1.4e-13 51.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|300712427|ref|YP_003738240.1| - 3.8e-13 49.5 0.0 6.5e-13 48.7 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|300712427|ref|YP_003738240.1| - 2.9e-10 40.2 0.0 5.3e-10 39.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|300712427|ref|YP_003738240.1| - 5.2e-06 26.0 0.0 7.3e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|300712427|ref|YP_003738240.1| - 1.8e-05 25.4 0.0 0.00022 21.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|300712427|ref|YP_003738240.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|300712427|ref|YP_003738240.1| - 0.024 14.2 0.0 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|300712427|ref|YP_003738240.1| - 0.037 13.6 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain NodS PF05401.11 gi|300712427|ref|YP_003738240.1| - 0.085 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) PadR PF03551.14 gi|300712428|ref|YP_003738241.1| - 2.8e-16 59.2 0.7 4.2e-16 58.7 0.7 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|300712428|ref|YP_003738241.1| - 0.0029 17.5 0.1 0.004 17.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|300712428|ref|YP_003738241.1| - 0.012 15.4 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Rio2_N PF09202.11 gi|300712428|ref|YP_003738241.1| - 0.022 15.0 0.2 0.036 14.3 0.2 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_27 PF13463.6 gi|300712428|ref|YP_003738241.1| - 0.023 15.2 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain RTP PF02334.16 gi|300712428|ref|YP_003738241.1| - 0.026 15.1 0.0 0.035 14.8 0.0 1.2 1 0 0 1 1 1 0 Replication terminator protein FUR PF01475.19 gi|300712428|ref|YP_003738241.1| - 0.058 13.5 0.0 0.079 13.1 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family PIN PF01850.21 gi|300712429|ref|YP_003738242.1| - 3e-05 24.5 0.3 4.2e-05 24.1 0.3 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|300712429|ref|YP_003738242.1| - 0.013 15.8 0.0 0.1 12.8 0.1 1.9 2 0 0 2 2 2 0 PIN domain PIN_3 PF13470.6 gi|300712429|ref|YP_003738242.1| - 0.084 13.6 0.1 0.12 13.2 0.0 1.3 1 1 0 1 1 1 0 PIN domain Abhydrolase_1 PF00561.20 gi|300712431|ref|YP_003738244.1| - 1.3e-14 54.4 0.1 1.2e-13 51.4 0.1 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|300712431|ref|YP_003738244.1| - 4.3e-08 34.0 4.9 4.9e-08 33.8 4.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|300712431|ref|YP_003738244.1| - 3.3e-07 29.8 0.0 5.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|300712431|ref|YP_003738244.1| - 0.0012 18.6 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Abhydrolase_2 PF02230.16 gi|300712431|ref|YP_003738244.1| - 0.0016 18.3 0.0 0.038 13.8 0.0 2.3 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.21 gi|300712431|ref|YP_003738244.1| - 0.032 13.7 0.0 7 6.1 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family HTH_10 PF04967.12 gi|300712432|ref|YP_003738245.1| - 1.3e-14 53.7 0.1 2.1e-14 53.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain ABC_tran PF00005.27 gi|300712433|ref|YP_003738246.1| - 3.6e-30 105.3 0.0 1.6e-29 103.2 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|300712433|ref|YP_003738246.1| - 5.8e-12 46.0 0.2 1.2e-07 31.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|300712433|ref|YP_003738246.1| - 6.7e-06 25.9 0.0 1.4e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|300712433|ref|YP_003738246.1| - 1e-05 26.1 0.0 2.1e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|300712433|ref|YP_003738246.1| - 0.0086 15.5 0.0 1.7 8.0 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|300712433|ref|YP_003738246.1| - 0.011 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_10 PF12846.7 gi|300712433|ref|YP_003738246.1| - 0.022 13.7 0.0 0.039 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_23 PF13476.6 gi|300712433|ref|YP_003738246.1| - 0.027 15.0 0.0 0.051 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|300712433|ref|YP_003738246.1| - 0.036 14.1 0.1 0.41 10.7 0.0 2.5 2 1 1 3 3 3 0 50S ribosome-binding GTPase Phlebovirus_NSM PF07246.11 gi|300712433|ref|YP_003738246.1| - 0.044 13.2 0.0 0.076 12.4 0.0 1.3 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M AAA_29 PF13555.6 gi|300712433|ref|YP_003738246.1| - 0.051 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|300712433|ref|YP_003738246.1| - 0.094 13.1 0.1 0.15 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain ABC2_membrane_2 PF12679.7 gi|300712434|ref|YP_003738247.1| - 1.6e-36 126.1 15.3 2.2e-36 125.6 15.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|300712434|ref|YP_003738247.1| - 2e-08 33.7 20.5 3.2e-07 29.8 20.5 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|300712434|ref|YP_003738247.1| - 0.00017 21.6 6.7 0.00017 21.6 6.7 2.2 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|300712434|ref|YP_003738247.1| - 0.00024 20.7 3.3 0.00024 20.7 3.3 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|300712434|ref|YP_003738247.1| - 0.05 13.0 17.6 1.8 7.9 17.6 2.8 1 1 0 1 1 1 0 ABC-2 type transporter DUF2892 PF11127.8 gi|300712435|ref|YP_003738248.1| - 0.51 10.4 9.6 7.4 6.7 4.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) MFS_3 PF05977.13 gi|300712436|ref|YP_003738249.1| - 1.2e-14 53.6 31.2 5.7e-13 48.1 7.3 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1 PF07690.16 gi|300712436|ref|YP_003738249.1| - 1.2e-11 44.2 44.6 3e-11 42.8 33.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily HTH_20 PF12840.7 gi|300712438|ref|YP_003738251.1| - 8.1e-09 35.4 0.0 9.8e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|300712438|ref|YP_003738251.1| - 0.046 13.3 0.0 0.1 12.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|300712438|ref|YP_003738251.1| - 0.095 12.6 0.0 0.15 12.0 0.0 1.4 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF1707 PF08044.11 gi|300712440|ref|YP_003738253.1| - 0.17 12.0 4.6 0.44 10.7 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) UPF0181 PF03701.14 gi|300712440|ref|YP_003738253.1| - 0.71 9.5 2.5 1.2 8.8 0.1 2.5 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0181) Cupin_2 PF07883.11 gi|300712441|ref|YP_003738254.1| - 2.3e-12 46.4 1.1 3.5e-12 45.8 0.8 1.4 1 1 0 1 1 1 1 Cupin domain Cupin_7 PF12973.7 gi|300712441|ref|YP_003738254.1| - 5.9e-06 26.1 0.0 9.1e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_1 PF00190.22 gi|300712441|ref|YP_003738254.1| - 1.2e-05 25.0 0.0 1.4e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|300712441|ref|YP_003738254.1| - 2.8e-05 23.7 0.1 4.5e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) cNMP_binding PF00027.29 gi|300712441|ref|YP_003738254.1| - 9.6e-05 22.4 0.0 0.00015 21.8 0.0 1.4 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Cupin_6 PF12852.7 gi|300712441|ref|YP_003738254.1| - 0.00036 20.3 0.0 0.0004 20.2 0.0 1.2 1 0 0 1 1 1 1 Cupin 3-HAO PF06052.12 gi|300712441|ref|YP_003738254.1| - 0.0045 16.6 0.1 0.0054 16.4 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyanthranilic acid dioxygenase ARD PF03079.14 gi|300712441|ref|YP_003738254.1| - 0.0099 16.1 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 ARD/ARD' family Colicin-DNase PF12639.7 gi|300712441|ref|YP_003738254.1| - 0.022 15.5 0.2 0.037 14.8 0.0 1.5 2 0 0 2 2 2 0 DNase/tRNase domain of colicin-like bacteriocin AraC_binding PF02311.19 gi|300712441|ref|YP_003738254.1| - 0.024 14.5 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Duffy_binding PF05424.11 gi|300712441|ref|YP_003738254.1| - 0.06 13.4 0.0 0.067 13.2 0.0 1.2 1 1 0 1 1 1 0 Duffy binding domain HTH_24 PF13412.6 gi|300712442|ref|YP_003738255.1| - 7.1e-14 51.1 0.2 1.3e-13 50.3 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|300712442|ref|YP_003738255.1| - 3e-12 46.1 0.2 5.4e-12 45.3 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|300712442|ref|YP_003738255.1| - 4.8e-06 26.4 0.2 9.1e-06 25.5 0.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|300712442|ref|YP_003738255.1| - 5.6e-06 26.1 0.1 1.9e-05 24.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|300712442|ref|YP_003738255.1| - 8.8e-06 25.7 0.0 1.7e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|300712442|ref|YP_003738255.1| - 7.2e-05 22.2 0.2 0.00017 21.0 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|300712442|ref|YP_003738255.1| - 0.00016 21.6 0.1 0.00037 20.4 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|300712442|ref|YP_003738255.1| - 0.0003 20.5 1.0 0.00061 19.5 0.3 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|300712442|ref|YP_003738255.1| - 0.00042 20.1 0.2 0.0015 18.4 0.1 2.0 2 1 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|300712442|ref|YP_003738255.1| - 0.0005 19.8 0.5 0.0029 17.3 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_27 PF13463.6 gi|300712442|ref|YP_003738255.1| - 0.0012 19.3 0.1 0.0031 18.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|300712442|ref|YP_003738255.1| - 0.002 18.4 0.1 0.0045 17.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|300712442|ref|YP_003738255.1| - 0.0049 16.6 0.5 0.066 13.0 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|300712442|ref|YP_003738255.1| - 0.0077 16.4 0.1 0.0077 16.4 0.1 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|300712442|ref|YP_003738255.1| - 0.011 15.6 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|300712442|ref|YP_003738255.1| - 0.012 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|300712442|ref|YP_003738255.1| - 0.016 14.9 0.1 0.024 14.3 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Sigma70_r4_2 PF08281.12 gi|300712442|ref|YP_003738255.1| - 0.028 14.1 0.2 0.061 13.0 0.2 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 RCC_reductase PF06405.11 gi|300712442|ref|YP_003738255.1| - 0.045 12.9 0.0 0.055 12.7 0.0 1.2 1 0 0 1 1 1 0 Red chlorophyll catabolite reductase (RCC reductase) DUF294_C PF10335.9 gi|300712442|ref|YP_003738255.1| - 0.063 13.1 0.1 0.13 12.1 0.1 1.6 1 1 0 1 1 1 0 Putative nucleotidyltransferase substrate binding domain Med11 PF10280.9 gi|300712442|ref|YP_003738255.1| - 0.067 13.7 0.1 0.1 13.1 0.1 1.3 1 0 0 1 1 1 0 Mediator complex protein HrcA_DNA-bdg PF03444.15 gi|300712442|ref|YP_003738255.1| - 0.075 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.21 gi|300712442|ref|YP_003738255.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|300712442|ref|YP_003738255.1| - 0.082 12.7 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_CodY PF08222.11 gi|300712442|ref|YP_003738255.1| - 0.14 11.7 0.1 0.28 10.8 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain PadR PF03551.14 gi|300712443|ref|YP_003738256.1| - 2.6e-11 43.3 0.0 3.1e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|300712443|ref|YP_003738256.1| - 0.054 13.5 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.6 gi|300712443|ref|YP_003738256.1| - 0.072 13.3 0.0 0.094 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|300712443|ref|YP_003738256.1| - 0.077 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Usp PF00582.26 gi|300712444|ref|YP_003738257.1| - 1.7e-19 70.7 0.1 1.9e-19 70.6 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Peptidase_S51 PF03575.17 gi|300712444|ref|YP_003738257.1| - 0.14 11.8 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S51 DUF1931 PF09123.11 gi|300712445|ref|YP_003738258.1| - 9.4e-05 22.5 0.7 0.0001 22.5 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|300712445|ref|YP_003738258.1| - 0.00094 19.4 0.0 0.0013 19.0 0.0 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Phage_TAC_8 PF10666.9 gi|300712445|ref|YP_003738258.1| - 0.061 13.6 0.2 0.064 13.5 0.2 1.1 1 0 0 1 1 1 0 Phage tail assembly chaperone protein Gp14 ()A118 Glutaredoxin PF00462.24 gi|300712445|ref|YP_003738258.1| - 0.21 11.8 0.1 0.24 11.7 0.1 1.1 1 0 0 1 1 1 0 Glutaredoxin SprT-like PF10263.9 gi|300712447|ref|YP_003738260.1| - 8.9e-09 35.2 0.1 1.1e-08 34.9 0.1 1.2 1 0 0 1 1 1 1 SprT-like family NOB1_Zn_bind PF08772.11 gi|300712447|ref|YP_003738260.1| - 0.00074 19.6 0.3 0.0013 18.8 0.3 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|300712447|ref|YP_003738260.1| - 0.0017 18.4 3.3 0.045 13.8 3.1 2.1 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|300712447|ref|YP_003738260.1| - 0.036 13.7 0.2 0.036 13.7 0.2 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Aminopep PF10023.9 gi|300712447|ref|YP_003738260.1| - 0.082 12.3 0.0 0.088 12.2 0.0 1.1 1 0 0 1 1 1 0 Putative aminopeptidase BSP PF04450.12 gi|300712447|ref|YP_003738260.1| - 0.1 12.4 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria WLM PF08325.10 gi|300712447|ref|YP_003738260.1| - 0.15 12.1 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 WLM domain Peptidase_M91 PF14891.6 gi|300712447|ref|YP_003738260.1| - 0.17 12.2 0.1 0.21 11.9 0.1 1.2 1 0 0 1 1 1 0 Effector protein zinc_ribbon_10 PF10058.9 gi|300712447|ref|YP_003738260.1| - 0.29 10.9 4.2 0.59 9.9 4.2 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DNA_RNApol_7kD PF03604.13 gi|300712447|ref|YP_003738260.1| - 0.8 9.4 0.2 0.8 9.4 0.2 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PHD PF00628.29 gi|300712447|ref|YP_003738260.1| - 4 7.4 10.5 3.4 7.6 5.8 2.5 2 1 0 2 2 2 0 PHD-finger DUF4488 PF14869.6 gi|300712448|ref|YP_003738261.1| - 0.18 11.7 0.7 1.1 9.2 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4488) UbiD PF01977.16 gi|300712449|ref|YP_003738262.1| - 7.8e-101 337.9 0.0 1.1e-100 337.4 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD PF01977.16 gi|300712450|ref|YP_003738263.1| - 1.2e-33 116.6 0.0 1.5e-33 116.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF35_N PF12172.8 gi|300712452|ref|YP_003738265.1| - 6.4e-08 32.3 3.1 1.3e-07 31.3 3.1 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|300712452|ref|YP_003738265.1| - 2.2e-06 27.5 0.2 5.7e-06 26.2 0.2 1.8 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated RecC_C PF17946.1 gi|300712452|ref|YP_003738265.1| - 0.12 12.1 0.1 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 RecC C-terminal domain ACP_syn_III_C PF08541.10 gi|300712452|ref|YP_003738265.1| - 0.13 12.4 0.5 0.34 11.1 0.1 1.8 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|300712453|ref|YP_003738266.1| - 2.1e-19 69.9 0.1 7.5e-19 68.1 0.1 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|300712453|ref|YP_003738266.1| - 1.9e-09 37.2 0.1 4.7e-09 36.0 0.1 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|300712453|ref|YP_003738266.1| - 8.2e-07 28.8 2.0 1.6e-06 27.9 1.0 1.8 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|300712453|ref|YP_003738266.1| - 0.014 15.3 0.3 1 9.3 0.1 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Scytalone_dh PF02982.14 gi|300712453|ref|YP_003738266.1| - 0.03 14.1 0.1 0.051 13.4 0.1 1.3 1 0 0 1 1 1 0 Scytalone dehydratase HTH_40 PF14493.6 gi|300712454|ref|YP_003738267.1| - 0.071 13.6 0.0 0.085 13.3 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain Aldedh PF00171.22 gi|300712455|ref|YP_003738268.1| - 1.2e-41 142.7 0.0 1.4e-41 142.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Acyl-CoA_dh_1 PF00441.24 gi|300712456|ref|YP_003738269.1| - 1.5e-42 145.3 1.8 2.5e-42 144.6 1.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|300712456|ref|YP_003738269.1| - 6.2e-31 107.4 0.2 1.3e-30 106.3 0.2 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|300712456|ref|YP_003738269.1| - 1.4e-21 77.1 0.7 2.7e-21 76.2 0.7 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|300712456|ref|YP_003738269.1| - 1.6e-21 76.3 0.1 3.6e-21 75.2 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain ECH_1 PF00378.20 gi|300712457|ref|YP_003738270.1| - 4e-51 173.7 0.0 4.7e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|300712457|ref|YP_003738270.1| - 3.1e-24 86.1 0.0 2.3e-22 79.9 0.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Plectin PF00681.20 gi|300712457|ref|YP_003738270.1| - 0.028 14.3 0.0 0.098 12.6 0.0 1.9 1 1 0 1 1 1 0 Plectin repeat Zn-ribbon_8 PF09723.10 gi|300712458|ref|YP_003738271.1| - 2.1e-05 24.5 2.5 0.061 13.5 0.2 2.1 2 0 0 2 2 2 2 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|300712458|ref|YP_003738271.1| - 0.00085 19.6 0.8 0.00094 19.5 0.8 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|300712458|ref|YP_003738271.1| - 0.001 19.0 1.9 0.0017 18.2 1.9 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|300712458|ref|YP_003738271.1| - 0.0029 17.3 3.6 0.1 12.4 0.1 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain zf-CHC2 PF01807.20 gi|300712458|ref|YP_003738271.1| - 0.0066 16.2 0.5 0.0073 16.1 0.5 1.1 1 0 0 1 1 1 1 CHC2 zinc finger DUF3268 PF11672.8 gi|300712458|ref|YP_003738271.1| - 0.016 15.5 0.3 0.017 15.4 0.3 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain zf-ribbon_3 PF13248.6 gi|300712458|ref|YP_003738271.1| - 0.023 14.1 2.5 0.08 12.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|300712458|ref|YP_003738271.1| - 0.037 13.6 3.8 0.17 11.5 3.7 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|300712458|ref|YP_003738271.1| - 0.054 13.2 3.0 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|300712458|ref|YP_003738271.1| - 0.068 13.1 2.4 0.37 10.7 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_9 PF14369.6 gi|300712458|ref|YP_003738271.1| - 0.09 13.0 3.1 0.54 10.6 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon DpnI PF06044.12 gi|300712458|ref|YP_003738271.1| - 0.097 12.3 0.6 0.11 12.2 0.6 1.0 1 0 0 1 1 1 0 Dam-replacing family zinc_ribbon_10 PF10058.9 gi|300712458|ref|YP_003738271.1| - 0.16 11.7 4.1 2.3 8.0 4.3 2.0 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-B_box PF00643.24 gi|300712458|ref|YP_003738271.1| - 0.18 12.0 2.8 0.8 9.9 2.8 1.8 1 1 0 1 1 1 0 B-box zinc finger zf-C2H2 PF00096.26 gi|300712458|ref|YP_003738271.1| - 0.34 11.5 3.3 1.2 9.8 0.5 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|300712458|ref|YP_003738271.1| - 0.38 11.3 2.2 15 6.2 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_4 PF13894.6 gi|300712458|ref|YP_003738271.1| - 0.75 10.8 3.6 16 6.6 0.6 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger PaaA_PaaC PF05138.12 gi|300712459|ref|YP_003738272.1| - 6.1e-20 71.5 0.4 7.7e-20 71.2 0.4 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein PaaB PF06243.11 gi|300712460|ref|YP_003738273.1| - 0.00014 22.0 0.1 0.00017 21.8 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B AbiJ_NTD5 PF18865.1 gi|300712460|ref|YP_003738273.1| - 0.077 12.8 0.0 0.095 12.5 0.0 1.2 1 0 0 1 1 1 0 AbiJ N-terminal domain 5 FeS_assembly_P PF01883.19 gi|300712461|ref|YP_003738274.1| - 5.1e-17 61.8 0.1 7.9e-17 61.2 0.1 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|300712461|ref|YP_003738274.1| - 0.036 14.2 0.1 0.068 13.3 0.1 1.5 1 0 0 1 1 1 0 NifU-like domain PaaA_PaaC PF05138.12 gi|300712462|ref|YP_003738275.1| - 8.8e-58 195.5 0.3 1.2e-57 195.1 0.3 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein Haem_oxygenas_2 PF14518.6 gi|300712462|ref|YP_003738275.1| - 0.11 12.3 0.7 0.73 9.6 0.7 2.1 1 1 0 1 1 1 0 Iron-containing redox enzyme Acetyltransf_1 PF00583.25 gi|300712463|ref|YP_003738276.1| - 6.8e-13 48.9 0.2 8.4e-13 48.6 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|300712463|ref|YP_003738276.1| - 1.7e-08 34.7 0.0 3e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|300712463|ref|YP_003738276.1| - 1.3e-07 31.6 0.0 2.6e-07 30.6 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|300712463|ref|YP_003738276.1| - 3.8e-06 27.6 0.2 4.9e-06 27.3 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|300712463|ref|YP_003738276.1| - 0.00022 21.1 0.0 0.00044 20.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Fer2 PF00111.27 gi|300712464|ref|YP_003738277.1| - 5.2e-18 64.8 1.2 5.9e-18 64.6 1.2 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|300712464|ref|YP_003738277.1| - 0.00015 21.8 0.3 0.00033 20.6 0.3 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|300712464|ref|YP_003738277.1| - 0.0016 18.4 0.2 0.0018 18.3 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain AMP-binding PF00501.28 gi|300712465|ref|YP_003738278.1| - 9.5e-90 301.2 0.0 1.1e-89 301.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|300712465|ref|YP_003738278.1| - 1.1e-21 77.6 9.2 1.7e-21 76.9 2.0 3.2 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain Peripla_BP_6 PF13458.6 gi|300712466|ref|YP_003738279.1| - 3.1e-71 240.8 5.7 3.8e-71 240.5 5.7 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|300712466|ref|YP_003738279.1| - 7.1e-30 104.2 0.1 9.2e-30 103.8 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|300712466|ref|YP_003738279.1| - 2.4e-08 33.5 0.0 4.5e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 gi|300712466|ref|YP_003738279.1| - 3.3e-05 22.9 0.0 3.9e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein BPD_transp_2 PF02653.16 gi|300712467|ref|YP_003738280.1| - 1.2e-41 142.7 44.8 1.3e-41 142.5 44.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|300712468|ref|YP_003738281.1| - 1.5e-39 135.8 35.6 1.5e-39 135.8 35.6 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|300712469|ref|YP_003738282.1| - 1.1e-30 106.9 0.0 1.5e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|300712469|ref|YP_003738282.1| - 1.2e-12 48.3 4.2 1e-06 28.8 0.5 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|300712469|ref|YP_003738282.1| - 1.6e-11 43.8 0.0 3.1e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|300712469|ref|YP_003738282.1| - 8e-05 22.2 0.1 0.085 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|300712469|ref|YP_003738282.1| - 9.9e-05 22.9 0.4 0.00016 22.3 0.4 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|300712469|ref|YP_003738282.1| - 0.0016 18.1 0.1 0.0038 16.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|300712469|ref|YP_003738282.1| - 0.0025 18.1 0.1 0.0058 16.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|300712469|ref|YP_003738282.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|300712469|ref|YP_003738282.1| - 0.019 15.4 0.2 0.058 13.8 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|300712469|ref|YP_003738282.1| - 0.024 14.7 0.1 0.19 11.8 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|300712469|ref|YP_003738282.1| - 0.028 14.1 0.2 0.093 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain PRC PF05239.16 gi|300712469|ref|YP_003738282.1| - 0.071 13.2 0.1 0.64 10.1 0.0 2.2 2 0 0 2 2 2 0 PRC-barrel domain ABC_ATPase PF09818.9 gi|300712469|ref|YP_003738282.1| - 0.093 11.5 0.6 0.51 9.1 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class RecA PF00154.21 gi|300712469|ref|YP_003738282.1| - 0.1 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_27 PF13514.6 gi|300712469|ref|YP_003738282.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|300712469|ref|YP_003738282.1| - 0.25 10.0 0.0 0.33 9.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|300712470|ref|YP_003738283.1| - 8.3e-30 104.1 0.0 1.2e-29 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|300712470|ref|YP_003738283.1| - 7.8e-11 42.3 2.2 4e-06 26.8 0.1 2.4 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|300712470|ref|YP_003738283.1| - 5.6e-05 22.7 0.2 0.0027 17.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|300712470|ref|YP_003738283.1| - 0.00091 19.8 0.0 0.0019 18.7 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|300712470|ref|YP_003738283.1| - 0.0032 17.8 0.4 0.018 15.4 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|300712470|ref|YP_003738283.1| - 0.0093 15.7 1.4 0.041 13.6 1.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|300712470|ref|YP_003738283.1| - 0.017 14.9 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|300712470|ref|YP_003738283.1| - 0.02 14.6 0.1 0.039 13.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|300712470|ref|YP_003738283.1| - 0.044 14.2 0.4 0.076 13.4 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|300712470|ref|YP_003738283.1| - 0.063 13.5 0.3 0.41 10.9 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|300712470|ref|YP_003738283.1| - 0.11 12.4 0.2 0.23 11.4 0.1 1.6 2 0 0 2 2 2 0 NACHT domain SRP54 PF00448.22 gi|300712470|ref|YP_003738283.1| - 0.11 12.1 0.2 0.17 11.5 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.23 gi|300712470|ref|YP_003738283.1| - 0.15 12.2 0.1 0.35 11.0 0.1 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|300712470|ref|YP_003738283.1| - 0.17 11.0 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain DUF3584 PF12128.8 gi|300712470|ref|YP_003738283.1| - 0.17 9.3 0.0 0.25 8.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ECH_1 PF00378.20 gi|300712471|ref|YP_003738284.1| - 7e-38 130.4 0.0 8.2e-38 130.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|300712471|ref|YP_003738284.1| - 5e-18 65.7 0.0 9.5e-18 64.8 0.0 1.4 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SDH_sah PF01972.16 gi|300712471|ref|YP_003738284.1| - 0.033 13.2 0.2 0.079 11.9 0.1 1.5 2 0 0 2 2 2 0 Serine dehydrogenase proteinase ECH_1 PF00378.20 gi|300712472|ref|YP_003738285.1| - 3.7e-46 157.5 0.0 4.5e-46 157.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|300712472|ref|YP_003738285.1| - 3.1e-20 73.0 0.0 3.5e-18 66.2 0.0 2.0 2 0 0 2 2 2 2 Enoyl-CoA hydratase/isomerase 4HBT_2 PF13279.6 gi|300712473|ref|YP_003738286.1| - 6.3e-15 55.8 0.0 3.1e-13 50.3 0.0 2.1 2 0 0 2 2 2 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|300712473|ref|YP_003738286.1| - 5.5e-05 23.4 0.0 0.15 12.4 0.0 2.5 2 0 0 2 2 2 2 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|300712473|ref|YP_003738286.1| - 0.027 13.8 0.0 0.044 13.1 0.0 1.4 1 0 0 1 1 1 0 Acyl-ACP thioesterase ECH_1 PF00378.20 gi|300712474|ref|YP_003738287.1| - 2e-70 236.9 0.0 2.3e-70 236.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|300712474|ref|YP_003738287.1| - 1.8e-41 142.8 0.0 2.8e-33 115.8 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|300712475|ref|YP_003738288.1| - 7.3e-58 195.4 3.4 1.1e-57 194.9 3.4 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|300712475|ref|YP_003738288.1| - 4.4e-30 104.1 0.0 1.2e-29 102.8 0.0 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|300712475|ref|YP_003738288.1| - 0.014 15.5 2.2 0.017 15.3 0.9 1.8 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|300712475|ref|YP_003738288.1| - 0.058 13.4 0.1 0.15 12.0 0.1 1.7 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_C PF03720.15 gi|300712475|ref|YP_003738288.1| - 0.12 12.8 0.1 0.21 12.0 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|300712475|ref|YP_003738288.1| - 0.51 10.9 3.3 0.71 10.5 1.2 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Methyltransf_31 PF13847.6 gi|300712476|ref|YP_003738289.1| - 0.00022 21.0 0.0 0.00024 20.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|300712476|ref|YP_003738289.1| - 0.018 14.8 0.0 0.018 14.8 0.0 1.0 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DOT1 PF08123.13 gi|300712476|ref|YP_003738289.1| - 0.095 12.2 0.0 0.097 12.2 0.0 1.1 1 0 0 1 1 1 0 Histone methylation protein DOT1 GidB PF02527.15 gi|300712476|ref|YP_003738289.1| - 0.12 11.7 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Phage_integrase PF00589.22 gi|300712478|ref|YP_003738291.1| - 3.4e-09 36.7 0.0 9.9e-08 32.0 0.0 2.8 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|300712478|ref|YP_003738291.1| - 1.5e-06 28.5 0.0 3e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|300712478|ref|YP_003738291.1| - 0.0082 16.4 1.4 0.088 13.1 0.3 2.6 1 1 1 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|300712478|ref|YP_003738291.1| - 0.025 15.0 0.8 2.8 8.5 0.1 2.4 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain FdsD PF11390.8 gi|300712478|ref|YP_003738291.1| - 0.11 12.8 0.2 0.41 11.0 0.0 2.0 2 0 0 2 2 2 0 NADH-dependant formate dehydrogenase delta subunit FdsD TetR_C_28 PF17937.1 gi|300712478|ref|YP_003738291.1| - 0.25 11.8 3.2 1.5 9.3 0.2 2.7 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain AAA_31 PF13614.6 gi|300712480|ref|YP_003738293.1| - 3.5e-18 66.2 0.0 5.5e-18 65.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|300712480|ref|YP_003738293.1| - 0.00086 18.9 0.0 0.0051 16.3 0.0 2.0 1 1 1 2 2 2 1 Cellulose biosynthesis protein BcsQ ArfA PF03889.13 gi|300712480|ref|YP_003738293.1| - 0.12 11.8 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 Alternative ribosome-rescue factor A Cdc6_C PF09079.11 gi|300712481|ref|YP_003738294.1| - 9.8e-17 60.7 1.0 2.6e-16 59.4 0.1 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|300712481|ref|YP_003738294.1| - 1.3e-11 44.9 0.4 1.1e-10 41.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|300712481|ref|YP_003738294.1| - 1.1e-08 35.7 0.5 4.5e-08 33.6 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|300712481|ref|YP_003738294.1| - 5.9e-06 26.4 0.2 1.4e-05 25.2 0.2 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|300712481|ref|YP_003738294.1| - 6.4e-05 23.4 0.5 0.00033 21.1 0.3 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|300712481|ref|YP_003738294.1| - 0.00029 20.8 0.0 0.00051 20.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|300712481|ref|YP_003738294.1| - 0.00034 20.1 0.0 0.00068 19.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein Mg_chelatase PF01078.21 gi|300712481|ref|YP_003738294.1| - 0.0089 15.4 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|300712481|ref|YP_003738294.1| - 0.0089 16.4 0.0 0.02 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Kinesin PF00225.23 gi|300712481|ref|YP_003738294.1| - 0.013 14.4 0.0 0.03 13.3 0.0 1.6 2 0 0 2 2 2 0 Kinesin motor domain AAA_7 PF12775.7 gi|300712481|ref|YP_003738294.1| - 0.019 14.5 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF815 PF05673.13 gi|300712481|ref|YP_003738294.1| - 0.027 13.6 0.7 0.042 13.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|300712481|ref|YP_003738294.1| - 0.029 13.5 0.0 0.089 12.0 0.0 1.9 3 0 0 3 3 3 0 NB-ARC domain Microtub_bd PF16796.5 gi|300712481|ref|YP_003738294.1| - 0.098 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Microtubule binding DEAD PF00270.29 gi|300712481|ref|YP_003738294.1| - 0.18 11.6 1.0 12 5.6 1.0 2.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase TRAM PF01938.20 gi|300712485|ref|YP_003738298.1| - 5.7e-11 42.3 0.3 6e-11 42.2 0.3 1.0 1 0 0 1 1 1 1 TRAM domain PadR PF03551.14 gi|300712487|ref|YP_003738300.1| - 3.2e-16 59.1 0.5 3.8e-16 58.8 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|300712487|ref|YP_003738300.1| - 0.0013 18.5 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|300712487|ref|YP_003738300.1| - 0.0077 16.2 0.0 0.0098 15.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|300712487|ref|YP_003738300.1| - 0.014 15.9 0.1 0.017 15.6 0.1 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|300712487|ref|YP_003738300.1| - 0.031 14.2 0.1 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 MarR family TrmB PF01978.19 gi|300712487|ref|YP_003738300.1| - 0.062 13.2 0.0 0.095 12.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|300712488|ref|YP_003738301.1| - 1.2e-16 60.4 1.1 1.9e-16 59.8 1.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|300712488|ref|YP_003738301.1| - 0.0022 17.9 0.1 0.0035 17.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Rio2_N PF09202.11 gi|300712488|ref|YP_003738301.1| - 0.0057 16.8 0.3 0.01 16.1 0.3 1.4 1 0 0 1 1 1 1 Rio2, N-terminal RTP PF02334.16 gi|300712488|ref|YP_003738301.1| - 0.013 16.1 0.1 0.019 15.6 0.1 1.3 1 0 0 1 1 1 0 Replication terminator protein DUF1495 PF07381.11 gi|300712488|ref|YP_003738301.1| - 0.015 15.1 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|300712488|ref|YP_003738301.1| - 0.019 15.5 0.0 0.031 14.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.19 gi|300712488|ref|YP_003738301.1| - 0.11 12.7 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_20 PF12840.7 gi|300712491|ref|YP_003738304.1| - 8.5e-13 48.2 0.1 1.4e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|300712491|ref|YP_003738304.1| - 1.9e-08 34.0 0.0 2.7e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|300712491|ref|YP_003738304.1| - 2.2e-07 30.6 0.0 3.2e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|300712491|ref|YP_003738304.1| - 4.5e-07 29.7 0.0 8.8e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|300712491|ref|YP_003738304.1| - 3.7e-06 26.7 0.1 5.6e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|300712491|ref|YP_003738304.1| - 6.8e-05 23.0 0.0 0.00011 22.3 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|300712491|ref|YP_003738304.1| - 0.00034 20.1 0.0 0.00051 19.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|300712491|ref|YP_003738304.1| - 0.0004 20.8 0.1 0.00065 20.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|300712491|ref|YP_003738304.1| - 0.0011 18.7 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|300712491|ref|YP_003738304.1| - 0.0012 18.7 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit PadR PF03551.14 gi|300712491|ref|YP_003738304.1| - 0.0013 18.6 1.4 0.0072 16.3 0.3 2.1 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HxlR PF01638.17 gi|300712491|ref|YP_003738304.1| - 0.0022 17.8 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|300712491|ref|YP_003738304.1| - 0.006 16.7 0.0 0.0085 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_micro PF17007.5 gi|300712491|ref|YP_003738304.1| - 0.012 14.5 0.0 0.012 14.4 0.0 1.1 1 0 0 1 1 1 0 HTH-like RP-C PF03428.13 gi|300712491|ref|YP_003738304.1| - 0.021 14.5 0.0 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain TFIIA_gamma_N PF02268.16 gi|300712491|ref|YP_003738304.1| - 0.038 14.0 0.1 0.1 12.6 0.1 1.7 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain GntR PF00392.21 gi|300712491|ref|YP_003738304.1| - 0.04 13.6 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 gi|300712491|ref|YP_003738304.1| - 0.048 13.6 0.0 0.081 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.9 gi|300712491|ref|YP_003738304.1| - 0.17 12.0 0.1 0.17 12.0 0.1 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) PAS_4 PF08448.10 gi|300712494|ref|YP_003738307.1| - 1.8e-37 128.0 5.2 9.9e-11 41.9 0.1 4.6 4 0 0 4 4 4 4 PAS fold BAT PF15915.5 gi|300712494|ref|YP_003738307.1| - 1.7e-33 115.7 2.1 1.7e-33 115.7 2.1 2.2 2 0 0 2 2 2 1 GAF and HTH_10 associated domain PAS PF00989.25 gi|300712494|ref|YP_003738307.1| - 1.2e-32 112.2 0.0 4.5e-12 46.0 0.0 4.7 4 1 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|300712494|ref|YP_003738307.1| - 7.9e-29 100.0 0.0 3.6e-11 43.2 0.0 4.6 4 0 0 4 4 4 4 PAS domain GAF_2 PF13185.6 gi|300712494|ref|YP_003738307.1| - 2.6e-21 76.3 1.3 7.7e-18 65.1 0.1 4.0 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.7 gi|300712494|ref|YP_003738307.1| - 2.2e-20 72.2 3.0 7.8e-07 29.0 0.0 4.6 4 0 0 4 4 4 4 PAS domain HTH_10 PF04967.12 gi|300712494|ref|YP_003738307.1| - 5.3e-20 71.0 0.0 1.9e-19 69.2 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain PAS_7 PF12860.7 gi|300712494|ref|YP_003738307.1| - 5.3e-17 62.0 0.0 1.6e-05 25.0 0.0 5.4 4 1 0 4 4 4 3 PAS fold GAF PF01590.26 gi|300712494|ref|YP_003738307.1| - 1.7e-09 38.4 0.1 1.4e-08 35.4 0.0 2.7 3 0 0 3 3 3 1 GAF domain PAS_3 PF08447.12 gi|300712494|ref|YP_003738307.1| - 1.9e-07 31.3 0.0 0.017 15.4 0.0 4.4 4 0 0 4 4 4 1 PAS fold MarR_2 PF12802.7 gi|300712494|ref|YP_003738307.1| - 0.00011 22.1 0.1 0.11 12.4 0.0 2.8 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|300712494|ref|YP_003738307.1| - 0.00014 21.9 0.0 0.047 13.7 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain GAF_3 PF13492.6 gi|300712494|ref|YP_003738307.1| - 0.00037 20.9 0.0 0.002 18.5 0.0 2.3 2 0 0 2 2 1 1 GAF domain MLTR_LBD PF17765.1 gi|300712494|ref|YP_003738307.1| - 0.0041 17.2 2.3 1.1 9.4 0.1 4.2 4 1 0 4 4 4 1 MmyB-like transcription regulator ligand binding domain CdiI_2 PF18593.1 gi|300712494|ref|YP_003738307.1| - 0.022 15.4 0.0 0.097 13.3 0.0 2.1 1 0 0 1 1 1 0 CdiI immunity protein PAS_10 PF13596.6 gi|300712494|ref|YP_003738307.1| - 0.028 15.0 0.0 38 4.9 0.0 3.6 3 0 0 3 3 3 0 PAS domain HTH_24 PF13412.6 gi|300712494|ref|YP_003738307.1| - 0.038 13.5 0.0 1.9 8.1 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|300712494|ref|YP_003738307.1| - 0.073 13.1 0.0 11 6.1 0.0 2.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|300712494|ref|YP_003738307.1| - 0.078 12.8 0.0 0.33 10.8 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain Nif11 PF07862.11 gi|300712496|ref|YP_003738309.1| - 0.011 16.0 0.1 0.028 14.7 0.0 1.7 2 0 0 2 2 2 0 Nif11 domain Rho_N PF07498.12 gi|300712496|ref|YP_003738309.1| - 0.014 15.3 0.1 2.7 8.0 0.1 2.3 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain DUF4031 PF13223.6 gi|300712496|ref|YP_003738309.1| - 0.015 15.5 0.0 2.2 8.6 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4031) HTH_10 PF04967.12 gi|300712497|ref|YP_003738310.1| - 2.4e-17 62.4 0.1 4.1e-17 61.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|300712497|ref|YP_003738310.1| - 1.1e-06 28.6 0.2 1.8e-06 27.9 0.2 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|300712497|ref|YP_003738310.1| - 0.00065 19.2 0.1 0.002 17.6 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF746 PF05344.11 gi|300712497|ref|YP_003738310.1| - 0.0019 18.0 0.1 0.017 14.9 0.1 2.1 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) HTH_AsnC-type PF13404.6 gi|300712497|ref|YP_003738310.1| - 0.0025 17.6 0.3 0.007 16.2 0.3 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|300712497|ref|YP_003738310.1| - 0.0034 17.3 0.1 0.0077 16.1 0.1 1.6 1 0 0 1 1 1 1 MarR family UPF0122 PF04297.14 gi|300712497|ref|YP_003738310.1| - 0.0042 17.3 0.0 0.0093 16.2 0.0 1.5 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Mga PF05043.13 gi|300712497|ref|YP_003738310.1| - 0.0095 16.5 0.2 0.43 11.2 0.0 2.3 2 0 0 2 2 2 1 Mga helix-turn-helix domain HTH_3 PF01381.22 gi|300712497|ref|YP_003738310.1| - 0.013 15.6 0.0 0.034 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_1_2 PF13022.6 gi|300712497|ref|YP_003738310.1| - 0.021 15.0 0.0 0.049 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Sigma70_r4 PF04545.16 gi|300712497|ref|YP_003738310.1| - 0.031 13.8 0.7 0.068 12.7 0.3 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_psq PF05225.16 gi|300712497|ref|YP_003738310.1| - 0.043 13.6 0.2 0.11 12.3 0.2 1.7 1 1 0 1 1 1 0 helix-turn-helix, Psq domain HTH_53 PF18606.1 gi|300712497|ref|YP_003738310.1| - 0.048 13.3 0.9 0.72 9.6 0.2 2.5 2 0 0 2 2 2 0 Zap helix turn helix N-terminal domain GntR PF00392.21 gi|300712497|ref|YP_003738310.1| - 0.094 12.4 0.4 0.2 11.3 0.4 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_AraC PF00165.23 gi|300712497|ref|YP_003738310.1| - 0.14 12.3 0.0 0.34 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_10 PF04967.12 gi|300712498|ref|YP_003738311.1| - 1.4e-13 50.4 0.1 2.9e-13 49.4 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.6 gi|300712498|ref|YP_003738311.1| - 0.027 14.3 0.1 0.082 12.7 0.1 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.7 gi|300712498|ref|YP_003738311.1| - 0.032 14.3 0.1 0.29 11.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|300712498|ref|YP_003738311.1| - 0.065 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding EamA PF00892.20 gi|300712500|ref|YP_003738313.1| - 8e-31 107.0 29.9 1e-16 61.4 15.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF362 PF04015.12 gi|300712501|ref|YP_003738314.1| - 8.2e-06 26.2 0.0 1.2e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lar_N PF09861.9 gi|300712501|ref|YP_003738314.1| - 3.4e-05 23.1 0.3 5.2e-05 22.5 0.3 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF3215 PF11503.8 gi|300712501|ref|YP_003738314.1| - 0.14 12.0 0.2 1.6 8.7 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3215) LOR PF04525.12 gi|300712502|ref|YP_003738315.1| - 1.7e-05 24.5 0.2 0.015 14.9 0.1 2.9 2 1 0 2 2 2 1 LURP-one-related HAD_2 PF13419.6 gi|300712504|ref|YP_003738317.1| - 1.3e-11 44.9 0.0 1.7e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|300712504|ref|YP_003738317.1| - 1.7e-10 41.6 0.0 2e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|300712504|ref|YP_003738317.1| - 0.0022 18.0 0.1 0.0061 16.6 0.1 1.8 1 1 0 1 1 1 1 HAD-hyrolase-like DeoRC PF00455.22 gi|300712505|ref|YP_003738318.1| - 4.5e-49 166.5 0.0 6.6e-49 165.9 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 gi|300712505|ref|YP_003738318.1| - 4.8e-18 64.7 0.1 8.5e-18 63.9 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|300712505|ref|YP_003738318.1| - 8e-08 32.1 0.0 1.7e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|300712505|ref|YP_003738318.1| - 1e-06 28.3 0.0 3e-06 26.8 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|300712505|ref|YP_003738318.1| - 1.1e-05 25.2 0.0 2.6e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|300712505|ref|YP_003738318.1| - 1.7e-05 24.3 0.3 0.00013 21.5 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|300712505|ref|YP_003738318.1| - 5e-05 23.1 0.2 0.00012 21.9 0.2 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|300712505|ref|YP_003738318.1| - 5.4e-05 23.0 0.5 0.00022 21.0 0.0 2.2 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|300712505|ref|YP_003738318.1| - 0.00013 21.7 0.0 0.00031 20.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|300712505|ref|YP_003738318.1| - 0.00021 21.3 0.3 0.0023 18.0 0.1 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|300712505|ref|YP_003738318.1| - 0.00041 20.3 0.1 0.00097 19.1 0.1 1.6 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_Crp_2 PF13545.6 gi|300712505|ref|YP_003738318.1| - 0.00054 19.9 0.1 0.0019 18.1 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|300712505|ref|YP_003738318.1| - 0.0029 17.3 0.6 0.015 15.0 0.0 2.4 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|300712505|ref|YP_003738318.1| - 0.0031 17.3 0.0 0.0057 16.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|300712505|ref|YP_003738318.1| - 0.0067 16.5 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|300712505|ref|YP_003738318.1| - 0.0086 16.2 0.0 0.023 14.8 0.0 1.8 1 0 0 1 1 1 1 DprA winged helix domain Sigma70_r4_2 PF08281.12 gi|300712505|ref|YP_003738318.1| - 0.0094 15.6 0.1 0.048 13.4 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 DUF3489 PF11994.8 gi|300712505|ref|YP_003738318.1| - 0.0096 16.0 0.1 0.029 14.4 0.0 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF3489) Rrf2 PF02082.20 gi|300712505|ref|YP_003738318.1| - 0.0099 16.2 0.0 0.025 14.9 0.0 1.7 1 1 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.6 gi|300712505|ref|YP_003738318.1| - 0.013 15.3 0.0 0.033 14.0 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain FaeA PF04703.12 gi|300712505|ref|YP_003738318.1| - 0.015 15.7 0.0 0.029 14.7 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein HTH_Mga PF08280.11 gi|300712505|ref|YP_003738318.1| - 0.015 15.3 0.0 0.026 14.5 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_ECF PF07638.11 gi|300712505|ref|YP_003738318.1| - 0.017 15.0 0.6 0.035 14.0 0.0 1.8 2 0 0 2 2 2 0 ECF sigma factor HTH_AsnC-type PF13404.6 gi|300712505|ref|YP_003738318.1| - 0.049 13.5 0.2 0.13 12.1 0.1 1.9 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|300712505|ref|YP_003738318.1| - 0.053 13.7 0.0 0.15 12.3 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|300712505|ref|YP_003738318.1| - 0.06 13.1 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain DDE_Tnp_1_2 PF13586.6 gi|300712505|ref|YP_003738318.1| - 0.097 13.0 0.3 4 7.9 0.0 2.3 2 0 0 2 2 2 0 Transposase DDE domain HTH_31 PF13560.6 gi|300712505|ref|YP_003738318.1| - 0.1 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|300712505|ref|YP_003738318.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|300712505|ref|YP_003738318.1| - 0.13 12.4 0.2 0.41 10.7 0.0 2.0 3 0 0 3 3 1 0 Helix-turn-helix MerR PF00376.23 gi|300712505|ref|YP_003738318.1| - 0.16 11.8 0.2 0.46 10.3 0.2 1.8 1 1 0 1 1 1 0 MerR family regulatory protein Mga PF05043.13 gi|300712505|ref|YP_003738318.1| - 0.19 12.4 0.0 0.38 11.4 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain F_bP_aldolase PF01116.20 gi|300712506|ref|YP_003738319.1| - 1.3e-59 202.0 0.0 1.5e-59 201.8 0.0 1.0 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II SLT_2 PF13406.6 gi|300712506|ref|YP_003738319.1| - 0.18 11.0 0.1 0.37 10.0 0.1 1.4 1 0 0 1 1 1 0 Transglycosylase SLT domain FGGY_N PF00370.21 gi|300712507|ref|YP_003738320.1| - 4.5e-41 141.0 0.0 5.8e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|300712507|ref|YP_003738320.1| - 2.3e-21 76.4 0.0 3.7e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|300712508|ref|YP_003738321.1| - 2.8e-57 192.9 0.0 4.3e-57 192.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|300712508|ref|YP_003738321.1| - 1.1e-18 67.1 0.0 1.3e-18 66.9 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Gp_dh_N PF00044.24 gi|300712508|ref|YP_003738321.1| - 0.05 13.9 0.0 0.083 13.2 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PSII_BNR PF14870.6 gi|300712510|ref|YP_003738323.1| - 7.7e-05 22.1 0.1 0.00093 18.5 0.1 2.1 1 1 2 3 3 3 1 Photosynthesis system II assembly factor YCF48 Sortilin-Vps10 PF15902.5 gi|300712510|ref|YP_003738323.1| - 0.13 11.1 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 Sortilin, neurotensin receptor 3, Peptidase_C42 PF05533.12 gi|300712512|ref|YP_003738325.1| - 0.034 14.2 0.0 0.035 14.1 0.0 1.0 1 0 0 1 1 1 0 Beet yellows virus-type papain-like endopeptidase C42 NACHT_sigma PF17106.5 gi|300712513|ref|YP_003738326.1| - 0.024 14.8 1.5 0.04 14.1 1.5 1.3 1 0 0 1 1 1 0 Sigma domain on NACHT-NTPases DUF1409 PF07197.12 gi|300712513|ref|YP_003738326.1| - 0.25 11.2 1.2 15 5.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1409) AAA_31 PF13614.6 gi|300712514|ref|YP_003738327.1| - 2.3e-34 118.8 0.1 4.7e-34 117.8 0.1 1.5 1 1 1 2 2 2 1 AAA domain CbiA PF01656.23 gi|300712514|ref|YP_003738327.1| - 1.7e-15 57.2 0.0 3.5e-15 56.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|300712514|ref|YP_003738327.1| - 4.9e-09 35.9 2.4 3.1e-05 23.4 0.5 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|300712514|ref|YP_003738327.1| - 7.8e-08 32.1 0.0 1.6e-07 31.1 0.0 1.4 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|300712514|ref|YP_003738327.1| - 2.5e-07 30.4 0.5 6.3e-07 29.1 0.5 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase VirC1 PF07015.11 gi|300712514|ref|YP_003738327.1| - 3.7e-05 23.2 0.3 0.0025 17.2 0.1 2.3 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.15 gi|300712514|ref|YP_003738327.1| - 0.0019 17.5 1.8 0.011 15.0 1.8 2.1 1 1 0 1 1 1 1 Anion-transporting ATPase IucA_IucC PF04183.12 gi|300712515|ref|YP_003738328.1| - 2e-72 243.6 0.0 3e-72 243.0 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|300712515|ref|YP_003738328.1| - 2.6e-43 148.3 0.3 4.4e-43 147.5 0.3 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter K_oxygenase PF13434.6 gi|300712516|ref|YP_003738329.1| - 9.2e-110 367.0 0.0 1.1e-109 366.7 0.0 1.0 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.14 gi|300712516|ref|YP_003738329.1| - 0.0014 18.0 0.0 0.0073 15.6 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|300712516|ref|YP_003738329.1| - 0.0079 16.2 0.0 0.72 9.8 0.1 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding RL PF17797.1 gi|300712516|ref|YP_003738329.1| - 0.091 12.7 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 RL domain Acetyltransf_8 PF13523.6 gi|300712517|ref|YP_003738330.1| - 2.8e-51 173.0 0.3 3.8e-51 172.6 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|300712517|ref|YP_003738330.1| - 1.8e-12 48.1 0.0 4.2e-12 46.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|300712517|ref|YP_003738330.1| - 0.00022 21.4 0.0 0.00029 21.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|300712517|ref|YP_003738330.1| - 0.0093 15.9 0.0 0.051 13.5 0.0 2.0 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|300712517|ref|YP_003738330.1| - 0.054 13.9 0.0 0.081 13.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|300712517|ref|YP_003738330.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Pyridoxal_deC PF00282.19 gi|300712518|ref|YP_003738331.1| - 1.6e-61 208.1 0.0 1.9e-61 207.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|300712518|ref|YP_003738331.1| - 0.00046 19.6 0.0 0.00067 19.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|300712518|ref|YP_003738331.1| - 0.052 12.5 0.0 0.51 9.2 0.0 2.3 2 1 0 2 2 2 0 Aminotransferase class-V Aminotran_3 PF00202.21 gi|300712519|ref|YP_003738332.1| - 1.8e-11 43.4 0.0 2e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Haem_degrading PF03928.14 gi|300712520|ref|YP_003738333.1| - 2.3e-34 118.0 0.1 2.6e-34 117.8 0.1 1.0 1 0 0 1 1 1 1 Haem-degrading Dehydratase_MU PF02288.15 gi|300712521|ref|YP_003738334.1| - 1.7e-26 92.2 0.0 2e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 Dehydratase medium subunit DDR PF08841.10 gi|300712522|ref|YP_003738335.1| - 5.5e-153 508.7 2.6 5.5e-153 508.7 2.6 2.2 3 0 0 3 3 3 1 Diol dehydratase reactivase ATPase-like domain DDR_swiveling PF18427.1 gi|300712522|ref|YP_003738335.1| - 3.7e-69 231.9 4.5 3.7e-69 231.9 4.5 1.8 2 0 0 2 2 2 1 DD-reactivating factor swiveling domain Ppx-GppA PF02541.16 gi|300712522|ref|YP_003738335.1| - 0.0025 17.3 0.3 0.046 13.2 0.1 2.4 2 0 0 2 2 2 1 Ppx/GppA phosphatase family FtsA PF14450.6 gi|300712522|ref|YP_003738335.1| - 0.0058 17.0 4.2 1.6 9.2 0.0 3.0 2 1 0 2 2 2 2 Cell division protein FtsA POR PF01558.18 gi|300712522|ref|YP_003738335.1| - 0.02 15.0 0.1 0.82 9.7 0.1 2.3 2 0 0 2 2 2 0 Pyruvate ferredoxin/flavodoxin oxidoreductase Dehydratase_SU PF02287.15 gi|300712523|ref|YP_003738336.1| - 4.1e-52 175.8 0.4 4.5e-52 175.6 0.4 1.0 1 0 0 1 1 1 1 Dehydratase small subunit Dehydratase_MU PF02288.15 gi|300712524|ref|YP_003738337.1| - 1.3e-29 102.3 0.0 1.7e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 Dehydratase medium subunit Dehydratase_LU PF02286.15 gi|300712525|ref|YP_003738338.1| - 1.3e-302 1004.3 1.0 1.5e-302 1004.2 1.0 1.0 1 0 0 1 1 1 1 Dehydratase large subunit EutB PF06751.11 gi|300712525|ref|YP_003738338.1| - 0.073 11.9 0.8 0.32 9.8 0.1 1.9 2 0 0 2 2 2 0 Ethanolamine ammonia lyase large subunit (EutB) adh_short_C2 PF13561.6 gi|300712526|ref|YP_003738339.1| - 9.5e-64 215.2 0.1 1.2e-63 214.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|300712526|ref|YP_003738339.1| - 7.2e-59 198.5 0.3 8.6e-59 198.3 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|300712526|ref|YP_003738339.1| - 1.5e-12 47.8 0.1 1.9e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|300712526|ref|YP_003738339.1| - 0.005 16.3 0.0 0.0072 15.8 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|300712526|ref|YP_003738339.1| - 0.025 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|300712526|ref|YP_003738339.1| - 0.054 14.1 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|300712526|ref|YP_003738339.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DoxX PF07681.12 gi|300712528|ref|YP_003738341.1| - 7.6e-06 26.4 2.5 1.7e-05 25.3 2.5 1.6 1 0 0 1 1 1 1 DoxX DoxX_3 PF13781.6 gi|300712528|ref|YP_003738341.1| - 7.6e-06 26.5 1.3 7.6e-06 26.5 1.3 2.0 2 1 1 3 3 3 1 DoxX-like family CcmH PF03918.14 gi|300712528|ref|YP_003738341.1| - 0.0057 15.9 0.6 0.22 10.8 0.1 2.3 1 1 1 2 2 2 2 Cytochrome C biogenesis protein DAO PF01266.24 gi|300712529|ref|YP_003738342.1| - 6.1e-51 174.1 1.5 7e-51 173.9 1.5 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|300712529|ref|YP_003738342.1| - 2.6e-08 33.4 0.4 5.2e-08 32.4 0.4 1.5 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|300712529|ref|YP_003738342.1| - 1.1e-05 24.9 0.0 0.028 13.6 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|300712529|ref|YP_003738342.1| - 0.00051 20.2 0.2 0.0013 18.9 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|300712529|ref|YP_003738342.1| - 0.00083 18.7 0.0 0.0062 15.8 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|300712529|ref|YP_003738342.1| - 0.00084 18.6 0.4 0.021 14.0 0.3 2.1 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|300712529|ref|YP_003738342.1| - 0.00097 18.5 0.0 0.84 8.8 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|300712529|ref|YP_003738342.1| - 0.001 19.1 1.0 1.2 9.1 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|300712529|ref|YP_003738342.1| - 0.0016 17.2 0.7 0.23 10.1 0.4 2.2 2 0 0 2 2 2 2 HI0933-like protein Trp_halogenase PF04820.14 gi|300712529|ref|YP_003738342.1| - 0.019 13.8 0.3 0.19 10.6 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase Pepsin-I3 PF06394.13 gi|300712529|ref|YP_003738342.1| - 0.13 12.4 0.1 0.28 11.4 0.1 1.4 1 0 0 1 1 1 0 Pepsin inhibitor-3-like repeated domain Pyr_redox PF00070.27 gi|300712529|ref|YP_003738342.1| - 0.13 12.8 0.1 0.94 10.1 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|300712529|ref|YP_003738342.1| - 0.14 12.5 0.1 0.29 11.4 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain DUF1188 PF06690.11 gi|300712529|ref|YP_003738342.1| - 0.24 10.9 0.0 0.37 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) GIDA PF01134.22 gi|300712529|ref|YP_003738342.1| - 0.31 10.1 0.2 20 4.1 0.0 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A PAP2 PF01569.21 gi|300712530|ref|YP_003738343.1| - 6.5e-12 45.4 15.5 1.1e-11 44.7 7.0 2.4 1 1 1 2 2 2 2 PAP2 superfamily PAP2_3 PF14378.6 gi|300712530|ref|YP_003738343.1| - 4.5e-08 33.0 16.6 2.6e-07 30.5 16.1 2.0 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|300712530|ref|YP_003738343.1| - 0.01 16.4 0.7 0.01 16.4 0.7 2.2 2 1 0 2 2 2 0 PAP2 superfamily C-terminal DUF2157 PF09925.9 gi|300712530|ref|YP_003738343.1| - 0.38 10.6 9.2 1.4 8.7 9.2 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF2304 PF10066.9 gi|300712530|ref|YP_003738343.1| - 6.6 7.0 7.3 0.86 9.8 0.9 2.4 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2304) DUF4131 PF13567.6 gi|300712530|ref|YP_003738343.1| - 6.9 6.3 6.6 2.4 7.8 1.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ABC_tran PF00005.27 gi|300712531|ref|YP_003738344.1| - 4.5e-31 108.2 0.0 8.1e-31 107.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.17 gi|300712531|ref|YP_003738344.1| - 4.3e-12 46.1 0.3 8.4e-10 38.8 0.0 3.1 2 1 0 2 2 2 1 TOBE domain TOBE_2 PF08402.10 gi|300712531|ref|YP_003738344.1| - 2.4e-07 30.8 0.1 1.1e-06 28.7 0.0 2.2 1 1 1 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|300712531|ref|YP_003738344.1| - 1.1e-05 25.4 4.9 0.0033 17.3 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|300712531|ref|YP_003738344.1| - 0.0012 19.3 0.3 0.0025 18.2 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|300712531|ref|YP_003738344.1| - 0.0033 16.9 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|300712531|ref|YP_003738344.1| - 0.019 14.7 0.1 0.04 13.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.14 gi|300712531|ref|YP_003738344.1| - 0.045 13.7 0.1 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|300712531|ref|YP_003738344.1| - 0.071 13.4 0.1 0.13 12.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|300712531|ref|YP_003738344.1| - 0.072 13.0 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase RNase_II_C_S1 PF18614.1 gi|300712531|ref|YP_003738344.1| - 0.072 13.0 0.2 0.072 13.0 0.2 2.4 3 0 0 3 3 3 0 RNase II-type exonuclease C-terminal S1 domain SbcCD_C PF13558.6 gi|300712531|ref|YP_003738344.1| - 0.086 13.1 0.2 2.5 8.4 0.1 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|300712531|ref|YP_003738344.1| - 0.088 12.5 0.1 0.26 11.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|300712531|ref|YP_003738344.1| - 0.14 12.6 0.1 0.23 12.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|300712531|ref|YP_003738344.1| - 0.17 12.0 0.9 1.2 9.3 0.9 2.3 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|300712532|ref|YP_003738345.1| - 1.5e-17 64.0 15.3 1.5e-17 64.0 15.3 1.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|300712533|ref|YP_003738346.1| - 3.4e-19 69.5 0.0 4.5e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TFX_C PF14601.6 gi|300712534|ref|YP_003738347.1| - 2.5e-12 46.6 0.0 3.5e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|300712534|ref|YP_003738347.1| - 2.6e-05 23.7 0.3 4.6e-05 22.9 0.3 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|300712534|ref|YP_003738347.1| - 0.0002 20.9 0.1 0.00029 20.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|300712534|ref|YP_003738347.1| - 0.00048 19.7 0.2 0.0013 18.4 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|300712534|ref|YP_003738347.1| - 0.00081 19.4 0.1 0.0014 18.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.6 gi|300712534|ref|YP_003738347.1| - 0.0079 16.3 0.0 0.023 14.8 0.1 1.9 2 1 0 2 2 1 1 Helix-turn-helix domain KORA PF16509.5 gi|300712534|ref|YP_003738347.1| - 0.011 16.0 0.1 0.017 15.4 0.1 1.3 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_31 PF13560.6 gi|300712534|ref|YP_003738347.1| - 0.012 15.9 1.0 0.024 15.0 1.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|300712534|ref|YP_003738347.1| - 0.015 15.2 0.1 0.031 14.2 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_19 PF12844.7 gi|300712534|ref|YP_003738347.1| - 0.025 14.6 0.0 0.047 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|300712534|ref|YP_003738347.1| - 0.025 14.4 0.6 0.99 9.3 0.6 2.3 1 1 0 1 1 1 0 HTH DNA binding domain HTH_37 PF13744.6 gi|300712534|ref|YP_003738347.1| - 0.029 14.3 0.1 0.052 13.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|300712534|ref|YP_003738347.1| - 0.04 13.7 0.1 0.073 12.9 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|300712534|ref|YP_003738347.1| - 0.1 12.1 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NTP_transf_3 PF12804.7 gi|300712535|ref|YP_003738348.1| - 2.4e-41 141.7 2.0 3e-41 141.5 2.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|300712535|ref|YP_003738348.1| - 4.4e-07 29.9 0.7 6.1e-07 29.4 0.7 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|300712535|ref|YP_003738348.1| - 0.0081 15.8 0.0 0.01 15.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase LPD38 PF18857.1 gi|300712535|ref|YP_003738348.1| - 0.03 14.5 0.0 0.041 14.0 0.0 1.2 1 0 0 1 1 1 0 Large polyvalent protein associated domain 38 CTP_transf_3 PF02348.19 gi|300712535|ref|YP_003738348.1| - 0.039 13.9 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase MoeA_N PF03453.17 gi|300712536|ref|YP_003738349.1| - 4e-29 101.4 3.5 4e-29 101.4 3.5 1.7 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|300712536|ref|YP_003738349.1| - 3.7e-24 85.0 0.1 7.2e-24 84.1 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain COXG PF06240.13 gi|300712537|ref|YP_003738350.1| - 1.5e-17 63.6 0.2 2.9e-13 49.7 0.0 2.1 2 0 0 2 2 2 2 Carbon monoxide dehydrogenase subunit G (CoxG) Ald_Xan_dh_C2 PF02738.18 gi|300712538|ref|YP_003738351.1| - 1.1e-123 413.6 0.2 1.3e-123 413.3 0.2 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase FAD_binding_5 PF00941.21 gi|300712539|ref|YP_003738352.1| - 1e-50 171.8 0.0 1.3e-50 171.5 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase FAD_binding_4 PF01565.23 gi|300712539|ref|YP_003738352.1| - 0.014 15.2 0.0 0.038 13.7 0.0 1.7 1 1 0 1 1 1 0 FAD binding domain CO_deh_flav_C PF03450.17 gi|300712539|ref|YP_003738352.1| - 0.11 12.6 0.1 0.53 10.5 0.0 2.0 2 0 0 2 2 2 0 CO dehydrogenase flavoprotein C-terminal domain AAA_5 PF07728.14 gi|300712541|ref|YP_003738354.1| - 5.3e-14 52.4 0.0 1.5e-13 50.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|300712541|ref|YP_003738354.1| - 1.9e-10 41.2 0.0 5.7e-10 39.7 0.0 1.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|300712541|ref|YP_003738354.1| - 5.9e-09 35.9 0.0 0.0023 17.8 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|300712541|ref|YP_003738354.1| - 1.7e-07 31.6 0.0 1.3e-06 28.7 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|300712541|ref|YP_003738354.1| - 0.00017 21.8 0.0 0.00029 21.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|300712541|ref|YP_003738354.1| - 0.00018 21.3 0.0 0.21 11.3 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|300712541|ref|YP_003738354.1| - 0.00036 21.0 7.1 0.00063 20.2 2.5 2.8 2 2 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|300712541|ref|YP_003738354.1| - 0.0026 17.5 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.12 gi|300712541|ref|YP_003738354.1| - 0.003 17.5 0.3 0.18 11.7 0.0 2.4 2 1 0 2 2 2 1 NACHT domain RNA_helicase PF00910.22 gi|300712541|ref|YP_003738354.1| - 0.0066 16.8 0.0 0.095 13.1 0.0 2.2 1 1 0 1 1 1 1 RNA helicase Sigma54_activ_2 PF14532.6 gi|300712541|ref|YP_003738354.1| - 0.014 15.5 0.2 1.4 9.0 0.0 2.6 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|300712541|ref|YP_003738354.1| - 0.016 15.8 0.1 0.08 13.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_6 PF12774.7 gi|300712541|ref|YP_003738354.1| - 0.043 12.8 0.0 0.1 11.6 0.0 1.5 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region TsaE PF02367.17 gi|300712541|ref|YP_003738354.1| - 0.051 13.6 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE KAP_NTPase PF07693.14 gi|300712541|ref|YP_003738354.1| - 0.1 11.8 0.7 0.84 8.8 0.2 2.0 1 1 0 2 2 2 0 KAP family P-loop domain MCM PF00493.23 gi|300712541|ref|YP_003738354.1| - 0.13 11.3 0.0 0.83 8.7 0.0 2.0 2 0 0 2 2 2 0 MCM P-loop domain Zeta_toxin PF06414.12 gi|300712541|ref|YP_003738354.1| - 0.14 11.5 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|300712541|ref|YP_003738354.1| - 0.15 12.6 0.0 0.26 11.8 0.0 1.5 1 1 0 1 1 1 0 ABC transporter VWA_CoxE PF05762.14 gi|300712542|ref|YP_003738355.1| - 5e-40 137.3 4.3 1.1e-39 136.2 4.3 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein XdhC_C PF13478.6 gi|300712543|ref|YP_003738356.1| - 9.6e-34 116.6 0.0 3.2e-33 114.9 0.0 1.8 2 0 0 2 2 2 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|300712543|ref|YP_003738356.1| - 2.2e-20 72.6 7.2 1.1e-19 70.4 1.5 3.0 3 0 0 3 3 3 2 XdhC and CoxI family IMPDH PF00478.25 gi|300712545|ref|YP_003738358.1| - 1.7e-115 385.7 6.1 2.1e-115 385.4 6.1 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|300712545|ref|YP_003738358.1| - 2.5e-08 33.7 14.9 0.00017 21.1 0.1 2.2 1 1 1 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|300712545|ref|YP_003738358.1| - 9.3e-06 24.9 12.3 2.5e-05 23.5 12.3 1.9 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|300712545|ref|YP_003738358.1| - 2.7e-05 23.7 0.9 0.00049 19.6 0.1 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|300712545|ref|YP_003738358.1| - 0.00083 18.6 5.0 0.0038 16.4 4.8 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|300712545|ref|YP_003738358.1| - 0.017 14.3 0.8 0.031 13.5 0.8 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|300712545|ref|YP_003738358.1| - 0.14 11.5 4.5 0.26 10.6 3.9 1.7 1 1 1 2 2 2 0 Thiamine monophosphate synthase NanE PF04131.14 gi|300712545|ref|YP_003738358.1| - 0.45 9.7 3.8 4.5 6.4 0.1 2.9 1 1 3 4 4 4 0 Putative N-acetylmannosamine-6-phosphate epimerase BAT PF15915.5 gi|300712546|ref|YP_003738359.1| - 1.2e-42 145.4 2.5 3.1e-42 144.1 2.5 1.8 1 0 0 1 1 1 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|300712546|ref|YP_003738359.1| - 1.7e-20 73.7 0.4 1.1e-13 51.6 0.3 2.4 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|300712546|ref|YP_003738359.1| - 1.3e-15 56.9 0.0 2.7e-15 55.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF PF01590.26 gi|300712546|ref|YP_003738359.1| - 1.7e-08 35.2 0.1 2.4e-07 31.4 0.0 2.6 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|300712546|ref|YP_003738359.1| - 2.7e-08 34.2 0.2 0.016 15.6 0.0 3.0 3 0 0 3 3 3 2 GAF domain HTH_1 PF00126.27 gi|300712546|ref|YP_003738359.1| - 0.047 13.6 0.0 0.17 11.9 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Autoind_bind PF03472.15 gi|300712546|ref|YP_003738359.1| - 0.095 12.2 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 Autoinducer binding domain DUF2153 PF09921.9 gi|300712546|ref|YP_003738359.1| - 0.097 12.5 0.0 0.43 10.4 0.0 2.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2153) Transthyretin PF00576.21 gi|300712547|ref|YP_003738360.1| - 5.2e-35 120.4 0.0 5.8e-35 120.3 0.0 1.0 1 0 0 1 1 1 1 HIUase/Transthyretin family Uricase PF01014.18 gi|300712548|ref|YP_003738361.1| - 2.2e-38 131.5 0.0 1.5e-20 73.8 0.0 2.1 2 0 0 2 2 2 2 Uricase ATP-synt_ab PF00006.25 gi|300712548|ref|YP_003738361.1| - 0.17 11.5 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain OHCU_decarbox PF09349.10 gi|300712549|ref|YP_003738362.1| - 5.4e-44 150.4 0.5 6.2e-44 150.2 0.5 1.0 1 0 0 1 1 1 1 OHCU decarboxylase DUF3069 PF11269.8 gi|300712549|ref|YP_003738362.1| - 0.0013 19.0 0.3 0.0025 18.0 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3069) DUF2017 PF09438.10 gi|300712549|ref|YP_003738362.1| - 0.017 15.0 0.6 0.03 14.2 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2017) Peptidase_M20 PF01546.28 gi|300712550|ref|YP_003738363.1| - 1.6e-19 70.5 0.9 3e-19 69.5 0.9 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|300712550|ref|YP_003738363.1| - 2.5e-07 30.6 0.6 3.8e-07 30.0 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M28 M20_dimer PF07687.14 gi|300712550|ref|YP_003738363.1| - 4.2e-07 29.9 1.9 4.3e-07 29.8 0.1 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain DUF3830 PF12903.7 gi|300712551|ref|YP_003738364.1| - 3.3e-48 163.1 0.0 3.6e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3830) Amidohydro_1 PF01979.20 gi|300712552|ref|YP_003738365.1| - 1.7e-23 83.5 0.0 2.3e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|300712552|ref|YP_003738365.1| - 1.4e-16 61.1 6.3 6.5e-08 32.5 0.4 3.2 1 1 1 2 2 2 2 Amidohydrolase family IclR PF01614.18 gi|300712553|ref|YP_003738366.1| - 4.7e-31 107.3 0.1 1.2e-30 106.0 0.0 1.7 2 1 1 3 3 3 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|300712553|ref|YP_003738366.1| - 1.8e-08 34.1 0.0 3.3e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|300712553|ref|YP_003738366.1| - 5.8e-06 26.1 0.0 9.9e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|300712553|ref|YP_003738366.1| - 3.8e-05 23.5 0.2 0.00014 21.6 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|300712553|ref|YP_003738366.1| - 0.00048 20.0 0.0 0.00092 19.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|300712553|ref|YP_003738366.1| - 0.00087 19.3 0.0 0.0023 18.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|300712553|ref|YP_003738366.1| - 0.016 15.0 0.0 0.31 10.9 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_24 PF13412.6 gi|300712553|ref|YP_003738366.1| - 0.021 14.4 0.0 0.04 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|300712553|ref|YP_003738366.1| - 0.024 14.5 0.0 0.059 13.3 0.0 1.6 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|300712553|ref|YP_003738366.1| - 0.036 14.0 0.2 0.32 11.0 0.1 2.3 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family B-block_TFIIIC PF04182.12 gi|300712553|ref|YP_003738366.1| - 0.048 13.8 0.0 2.1 8.6 0.0 2.5 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Penicillinase_R PF03965.16 gi|300712553|ref|YP_003738366.1| - 0.071 13.5 0.0 0.16 12.3 0.0 1.7 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.12 gi|300712553|ref|YP_003738366.1| - 0.071 13.1 0.2 0.35 10.8 0.0 2.3 2 1 1 3 3 3 0 HTH domain HTH_36 PF13730.6 gi|300712553|ref|YP_003738366.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Xan_ur_permease PF00860.20 gi|300712554|ref|YP_003738367.1| - 1e-84 284.5 50.9 1.2e-84 284.3 50.9 1.1 1 0 0 1 1 1 1 Permease family Amidohydro_1 PF01979.20 gi|300712555|ref|YP_003738368.1| - 9.4e-38 130.4 0.5 1.1e-37 130.2 0.5 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|300712555|ref|YP_003738368.1| - 9.1e-14 51.8 3.6 1.2e-13 51.4 3.6 1.1 1 0 0 1 1 1 1 Amidohydrolase family Ald_Xan_dh_C2 PF02738.18 gi|300712556|ref|YP_003738369.1| - 3.7e-140 468.0 0.5 7.7e-140 467.0 0.4 1.5 2 0 0 2 2 2 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|300712556|ref|YP_003738369.1| - 7.6e-21 74.5 0.4 1.4e-20 73.7 0.4 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|300712557|ref|YP_003738370.1| - 5.4e-31 106.4 0.1 5.4e-31 106.4 0.1 2.6 2 1 1 3 3 3 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|300712557|ref|YP_003738370.1| - 8.2e-08 32.1 1.3 8.2e-08 32.1 1.3 2.1 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|300712557|ref|YP_003738370.1| - 1.6e-05 24.8 0.5 3.4e-05 23.8 0.5 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|300712557|ref|YP_003738370.1| - 0.12 12.5 3.7 0.17 11.9 1.4 2.5 2 1 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DUF2946 PF11162.8 gi|300712557|ref|YP_003738370.1| - 0.25 12.0 1.4 1.1 10.0 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2946) DUF3403 PF11883.8 gi|300712558|ref|YP_003738371.1| - 0.27 11.4 0.5 0.27 11.4 0.5 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3403) Bac_luciferase PF00296.20 gi|300712559|ref|YP_003738372.1| - 2.2e-57 194.9 3.4 3.6e-57 194.2 3.4 1.3 1 0 0 1 1 1 1 Luciferase-like monooxygenase RNase_P_p30 PF01876.16 gi|300712559|ref|YP_003738372.1| - 0.2 11.1 0.0 0.32 10.4 0.0 1.2 1 0 0 1 1 1 0 RNase P subunit p30 TspO_MBR PF03073.15 gi|300712560|ref|YP_003738373.1| - 2.9e-17 63.0 6.9 3.6e-17 62.7 6.9 1.1 1 0 0 1 1 1 1 TspO/MBR family Neisseria_PilC PF05567.11 gi|300712560|ref|YP_003738373.1| - 0.095 11.7 0.2 0.1 11.6 0.2 1.1 1 0 0 1 1 1 0 Neisseria PilC beta-propeller domain DUF389 PF04087.14 gi|300712561|ref|YP_003738374.1| - 5e-35 120.6 16.3 5e-35 120.6 16.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF389) DUF5429 PF17494.2 gi|300712561|ref|YP_003738374.1| - 0.019 15.0 0.3 0.041 13.9 0.3 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5429) DUF1269 PF06897.12 gi|300712561|ref|YP_003738374.1| - 0.033 14.5 0.8 0.033 14.5 0.8 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF1269) MR_MLE_C PF13378.6 gi|300712562|ref|YP_003738375.1| - 4.2e-58 196.5 0.9 5.6e-58 196.1 0.9 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|300712562|ref|YP_003738375.1| - 3e-15 56.5 0.1 6.4e-15 55.4 0.0 1.6 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF1059 PF06348.11 gi|300712562|ref|YP_003738375.1| - 0.26 11.6 0.9 0.5 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1059) PPC PF04151.15 gi|300712565|ref|YP_003738378.1| - 5.2e-07 30.7 6.4 0.02 16.0 0.0 3.1 2 1 0 2 2 2 2 Bacterial pre-peptidase C-terminal domain PfkB PF00294.24 gi|300712565|ref|YP_003738378.1| - 0.021 14.2 0.9 1.3 8.3 0.1 2.2 2 0 0 2 2 2 0 pfkB family carbohydrate kinase TIR-like PF10137.9 gi|300712565|ref|YP_003738378.1| - 0.022 14.7 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain MCPsignal PF00015.21 gi|300712566|ref|YP_003738379.1| - 7.7e-37 126.7 22.2 7.7e-37 126.7 22.2 3.9 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|300712566|ref|YP_003738379.1| - 4.8e-07 29.9 37.5 0.00048 20.3 3.8 5.1 3 1 2 5 5 5 4 Bacterial protein of unknown function (DUF948) PAS_4 PF08448.10 gi|300712566|ref|YP_003738379.1| - 1.7e-06 28.3 5.7 7.6e-05 22.9 0.3 4.3 3 1 0 3 3 3 1 PAS fold PAS PF00989.25 gi|300712566|ref|YP_003738379.1| - 1.4e-05 25.0 0.1 0.00011 22.2 0.0 2.6 1 1 1 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|300712566|ref|YP_003738379.1| - 0.00079 19.4 0.2 0.011 15.8 0.1 2.9 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.7 gi|300712566|ref|YP_003738379.1| - 0.0013 19.0 0.0 0.0061 16.8 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|300712566|ref|YP_003738379.1| - 0.003 17.7 0.1 0.003 17.7 0.1 4.0 2 2 2 4 4 4 1 PAS fold GldM_N PF12081.8 gi|300712566|ref|YP_003738379.1| - 0.0043 17.2 20.9 0.11 12.6 1.3 3.6 2 2 1 3 3 3 2 GldM N-terminal domain DUF745 PF05335.13 gi|300712566|ref|YP_003738379.1| - 0.0098 15.6 8.3 0.0098 15.6 8.3 4.1 1 1 1 3 3 3 1 Protein of unknown function (DUF745) PilJ PF13675.6 gi|300712566|ref|YP_003738379.1| - 0.018 15.1 1.5 0.018 15.1 1.5 4.7 2 1 1 5 5 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term Laminin_II PF06009.12 gi|300712566|ref|YP_003738379.1| - 0.11 12.5 38.2 0.57 10.2 8.9 5.0 2 2 3 5 5 5 0 Laminin Domain II Med9 PF07544.13 gi|300712566|ref|YP_003738379.1| - 0.22 11.7 6.3 0.14 12.2 0.3 3.3 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Ferritin PF00210.24 gi|300712566|ref|YP_003738379.1| - 0.24 11.3 13.7 0.044 13.7 5.0 3.2 1 1 2 3 3 3 0 Ferritin-like domain Syntaxin-6_N PF09177.11 gi|300712566|ref|YP_003738379.1| - 0.26 11.9 24.8 0.094 13.3 1.5 4.6 2 2 1 3 3 3 0 Syntaxin 6, N-terminal AAA_13 PF13166.6 gi|300712566|ref|YP_003738379.1| - 0.44 9.1 28.4 0.079 11.6 13.2 2.1 1 1 1 2 2 2 0 AAA domain HSBP1 PF06825.12 gi|300712566|ref|YP_003738379.1| - 0.71 9.8 3.9 1.9 8.4 0.3 3.1 3 0 0 3 3 3 0 Heat shock factor binding protein 1 TPR_MLP1_2 PF07926.12 gi|300712566|ref|YP_003738379.1| - 0.91 9.6 37.8 3.5 7.7 9.2 4.5 3 1 1 4 4 4 0 TPR/MLP1/MLP2-like protein DUF1664 PF07889.12 gi|300712566|ref|YP_003738379.1| - 1.5 8.8 30.0 0.94 9.5 2.4 4.7 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) GvpO PF05800.11 gi|300712566|ref|YP_003738379.1| - 1.8 8.6 7.4 0.53 10.3 0.9 3.3 2 1 2 4 4 4 0 Gas vesicle synthesis protein GvpO APG17 PF04108.12 gi|300712566|ref|YP_003738379.1| - 2.2 7.3 26.6 0.48 9.5 3.3 2.7 1 1 0 2 2 2 0 Autophagy protein Apg17 DUF3450 PF11932.8 gi|300712566|ref|YP_003738379.1| - 5.2 6.3 29.3 0.23 10.7 9.4 3.5 1 1 1 3 3 3 0 Protein of unknown function (DUF3450) Spc7 PF08317.11 gi|300712566|ref|YP_003738379.1| - 6.6 5.5 27.6 0.15 10.9 8.3 2.9 1 1 1 2 2 2 0 Spc7 kinetochore protein EutA PF06277.11 gi|300712567|ref|YP_003738380.1| - 3.4e-134 448.3 0.7 4e-134 448.1 0.7 1.0 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutA Ppx-GppA PF02541.16 gi|300712567|ref|YP_003738380.1| - 2e-05 24.2 0.1 3.4e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Ppx/GppA phosphatase family FtsA PF14450.6 gi|300712567|ref|YP_003738380.1| - 5.8e-05 23.5 4.4 0.0078 16.6 0.1 2.8 2 2 0 2 2 2 2 Cell division protein FtsA BcrAD_BadFG PF01869.20 gi|300712567|ref|YP_003738380.1| - 0.016 14.7 1.3 0.61 9.5 0.2 2.4 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family MreB_Mbl PF06723.13 gi|300712567|ref|YP_003738380.1| - 0.08 11.8 3.2 0.18 10.6 0.2 2.5 2 0 0 2 2 2 0 MreB/Mbl protein EutC PF05985.11 gi|300712568|ref|YP_003738381.1| - 1.2e-79 266.9 0.0 1.4e-79 266.7 0.0 1.0 1 0 0 1 1 1 1 Ethanolamine ammonia-lyase light chain (EutC) EutB PF06751.11 gi|300712569|ref|YP_003738382.1| - 4.9e-206 684.7 0.2 5.6e-206 684.5 0.2 1.0 1 0 0 1 1 1 1 Ethanolamine ammonia lyase large subunit (EutB) Dehydratase_LU PF02286.15 gi|300712569|ref|YP_003738382.1| - 0.0024 16.5 0.2 0.19 10.2 0.1 2.1 2 0 0 2 2 2 2 Dehydratase large subunit RraA-like PF03737.15 gi|300712570|ref|YP_003738383.1| - 5.2e-34 117.6 2.2 6.3e-34 117.3 2.2 1.1 1 0 0 1 1 1 1 Aldolase/RraA Nas2_N PF18265.1 gi|300712571|ref|YP_003738384.1| - 0.092 12.7 0.0 0.4 10.6 0.0 2.0 2 0 0 2 2 2 0 Nas2 N_terminal domain PadR PF03551.14 gi|300712572|ref|YP_003738385.1| - 4.3e-15 55.4 0.3 5.3e-15 55.2 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|300712572|ref|YP_003738385.1| - 0.0034 17.8 0.0 0.0045 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|300712572|ref|YP_003738385.1| - 0.015 15.1 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) TrmB PF01978.19 gi|300712572|ref|YP_003738385.1| - 0.046 13.6 0.0 0.066 13.1 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|300712572|ref|YP_003738385.1| - 0.054 13.4 0.1 0.2 11.6 0.1 2.0 1 1 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|300712572|ref|YP_003738385.1| - 0.092 12.7 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Virul_fac_BrkB PF03631.15 gi|300712573|ref|YP_003738386.1| - 5.8e-40 137.5 25.6 7.3e-40 137.2 25.6 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF3566 PF12089.8 gi|300712573|ref|YP_003738386.1| - 0.027 14.8 2.8 0.027 14.8 2.8 3.7 2 2 2 4 4 4 0 Transmembrane domain of unknown function (DUF3566) Polysacc_deac_1 PF01522.21 gi|300712574|ref|YP_003738387.1| - 9.9e-18 64.2 0.0 1.4e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|300712574|ref|YP_003738387.1| - 1.3e-08 34.7 0.0 2.1e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Glyco_hydro_57 PF03065.15 gi|300712574|ref|YP_003738387.1| - 0.004 16.4 0.0 0.0056 15.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 TetR_C_1 PF02909.17 gi|300712574|ref|YP_003738387.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Aldo_ket_red PF00248.21 gi|300712577|ref|YP_003738390.1| - 3.9e-58 197.0 0.1 4.8e-56 190.1 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family ADH_zinc_N_2 PF13602.6 gi|300712577|ref|YP_003738390.1| - 0.12 13.5 0.0 0.33 12.0 0.0 1.7 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Abhydrolase_3 PF07859.13 gi|300712578|ref|YP_003738391.1| - 4.8e-69 232.4 0.2 5.7e-69 232.2 0.2 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|300712578|ref|YP_003738391.1| - 2.3e-05 23.5 0.3 7.4e-05 21.8 0.3 1.7 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S15 PF02129.18 gi|300712578|ref|YP_003738391.1| - 5e-05 23.0 0.1 0.0032 17.1 0.1 2.3 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|300712578|ref|YP_003738391.1| - 0.0077 14.9 0.1 1.4 7.5 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Say1_Mug180 PF10340.9 gi|300712578|ref|YP_003738391.1| - 0.0095 14.8 0.0 0.017 14.0 0.0 1.4 1 1 0 1 1 1 1 Steryl acetyl hydrolase Peptidase_S9 PF00326.21 gi|300712578|ref|YP_003738391.1| - 0.014 14.9 0.3 0.061 12.8 0.3 1.9 1 1 0 1 1 1 0 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|300712578|ref|YP_003738391.1| - 0.015 16.0 4.5 0.022 15.4 4.5 1.3 1 1 0 1 1 1 0 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|300712578|ref|YP_003738391.1| - 0.052 13.6 0.0 0.067 13.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain Lipase_3 PF01764.25 gi|300712578|ref|YP_003738391.1| - 0.12 12.2 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) CUE PF02845.16 gi|300712579|ref|YP_003738392.1| - 0.031 14.0 0.0 0.055 13.2 0.0 1.5 1 0 0 1 1 1 0 CUE domain Big_11 PF18200.1 gi|300712581|ref|YP_003738394.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.0 1 0 0 1 1 1 0 Bacterial Ig-like domain DUF772 PF05598.11 gi|300712582|ref|YP_003738395.1| - 0.061 13.4 0.0 0.077 13.0 0.0 1.2 1 0 0 1 1 1 0 Transposase domain (DUF772) Thiolase_N PF00108.23 gi|300712583|ref|YP_003738396.1| - 8.7e-48 162.9 0.7 1.2e-47 162.4 0.7 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|300712583|ref|YP_003738396.1| - 3.5e-43 146.1 0.0 4.9e-43 145.7 0.0 1.2 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.10 gi|300712583|ref|YP_003738396.1| - 0.061 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DctM PF06808.12 gi|300712584|ref|YP_003738397.1| - 2.6e-61 207.7 48.1 5.6e-61 206.6 48.1 1.5 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component NMT1_3 PF16868.5 gi|300712585|ref|YP_003738398.1| - 2.9e-29 102.4 0.0 3.4e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 gi|300712585|ref|YP_003738398.1| - 0.0099 15.5 1.0 0.28 10.8 0.1 2.3 1 1 1 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PBP_like PF12727.7 gi|300712585|ref|YP_003738398.1| - 0.034 13.3 0.1 0.08 12.0 0.1 1.6 1 1 0 1 1 1 0 PBP superfamily domain HTH_Tnp_Tc3_2 PF01498.18 gi|300712586|ref|YP_003738399.1| - 0.00037 20.7 0.2 0.00063 19.9 0.2 1.3 1 0 0 1 1 1 1 Transposase HTH_24 PF13412.6 gi|300712586|ref|YP_003738399.1| - 0.0062 16.1 0.2 0.18 11.4 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MetOD2 PF18548.1 gi|300712586|ref|YP_003738399.1| - 0.029 14.5 0.2 0.055 13.6 0.2 1.4 1 0 0 1 1 1 0 Metanogen output domain 2 HTH_21 PF13276.6 gi|300712586|ref|YP_003738399.1| - 0.065 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 HTH-like domain HTH_32 PF13565.6 gi|300712586|ref|YP_003738399.1| - 0.12 13.0 0.1 0.27 11.9 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain MaoC_dehydratas PF01575.19 gi|300712587|ref|YP_003738400.1| - 2.8e-27 94.7 0.0 3.6e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain 4HBT PF03061.22 gi|300712587|ref|YP_003738400.1| - 0.014 15.8 0.1 0.034 14.5 0.1 1.7 1 1 0 1 1 1 0 Thioesterase superfamily MaoC_dehydrat_N PF13452.6 gi|300712587|ref|YP_003738400.1| - 0.079 13.1 0.1 0.16 12.1 0.1 1.5 1 1 0 1 1 1 0 N-terminal half of MaoC dehydratase FabA PF07977.13 gi|300712587|ref|YP_003738400.1| - 0.088 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 FabA-like domain 4HBT_2 PF13279.6 gi|300712587|ref|YP_003738400.1| - 0.098 13.1 0.0 0.1 13.1 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily 4HBT PF03061.22 gi|300712588|ref|YP_003738401.1| - 1.1e-12 48.2 0.1 1.4e-12 47.8 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|300712588|ref|YP_003738401.1| - 2.5e-12 47.1 0.0 2.8e-12 46.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) YiiD_C PF09500.10 gi|300712588|ref|YP_003738401.1| - 0.078 12.8 0.0 0.097 12.5 0.0 1.1 1 0 0 1 1 1 0 Putative thioesterase (yiiD_Cterm) ECH_1 PF00378.20 gi|300712589|ref|YP_003738402.1| - 6.4e-59 199.3 0.0 9.6e-59 198.7 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|300712589|ref|YP_003738402.1| - 1.7e-57 194.2 0.3 2.5e-57 193.6 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|300712589|ref|YP_003738402.1| - 1.6e-45 153.6 0.2 9.5e-23 80.6 0.0 3.1 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|300712589|ref|YP_003738402.1| - 1.7e-34 119.8 0.0 3.3e-31 109.0 0.0 2.3 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase EutB PF06751.11 gi|300712589|ref|YP_003738402.1| - 0.025 13.4 0.0 0.052 12.4 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) Acyl-CoA_dh_1 PF00441.24 gi|300712591|ref|YP_003738404.1| - 1.6e-33 116.0 0.7 2.7e-33 115.3 0.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|300712591|ref|YP_003738404.1| - 3.3e-26 92.1 0.0 8.6e-26 90.8 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|300712591|ref|YP_003738404.1| - 2.8e-22 78.7 0.0 5.5e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|300712591|ref|YP_003738404.1| - 5.5e-10 39.6 0.4 9e-10 38.9 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.28 gi|300712592|ref|YP_003738405.1| - 3.1e-83 279.7 0.0 3.7e-83 279.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|300712592|ref|YP_003738405.1| - 6.4e-22 78.3 0.4 1.3e-21 77.3 0.4 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|300712593|ref|YP_003738406.1| - 3.3e-42 144.2 2.0 4.8e-42 143.7 0.5 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|300712593|ref|YP_003738406.1| - 1.3e-25 89.5 0.0 3.3e-25 88.1 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|300712593|ref|YP_003738406.1| - 2e-21 76.8 0.6 4.4e-21 75.6 0.6 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|300712593|ref|YP_003738406.1| - 4.5e-18 65.8 1.5 9e-18 64.8 1.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Abhydrolase_1 PF00561.20 gi|300712595|ref|YP_003738408.1| - 3.2e-06 27.0 0.0 3.9e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Ndr PF03096.14 gi|300712595|ref|YP_003738408.1| - 0.00053 18.8 0.0 0.00058 18.6 0.0 1.2 1 0 0 1 1 1 1 Ndr family Hydrolase_4 PF12146.8 gi|300712595|ref|YP_003738408.1| - 0.0019 17.5 0.0 0.002 17.4 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 TrkA_N PF02254.18 gi|300712596|ref|YP_003738409.1| - 2.2e-37 127.9 10.9 5.1e-19 68.6 1.4 3.1 2 1 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|300712596|ref|YP_003738409.1| - 2.5e-26 91.3 1.1 1.9e-13 50.0 0.4 3.0 3 0 0 3 3 3 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|300712596|ref|YP_003738409.1| - 3.4e-05 23.7 3.5 7.2e-05 22.7 3.5 1.5 1 0 0 1 1 1 1 Ion channel DUF4177 PF13783.6 gi|300712597|ref|YP_003738410.1| - 9e-08 32.3 0.0 1.5e-07 31.6 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4177) DUF2761 PF10959.8 gi|300712597|ref|YP_003738410.1| - 0.077 13.0 0.0 0.096 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) Vut_1 PF02592.15 gi|300712598|ref|YP_003738411.1| - 0.013 15.8 1.8 0.013 15.8 1.8 2.1 2 0 0 2 2 2 0 Putative vitamin uptake transporter HTH_11 PF08279.12 gi|300712599|ref|YP_003738412.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 HTH domain CSTF_C PF14304.6 gi|300712599|ref|YP_003738412.1| - 0.042 13.4 0.2 0.75 9.4 0.0 2.2 2 0 0 2 2 2 0 Transcription termination and cleavage factor C-terminal Tn7_Tnp_TnsA_C PF08721.11 gi|300712599|ref|YP_003738412.1| - 0.064 13.9 0.0 0.15 12.7 0.0 1.5 1 1 0 1 1 1 0 TnsA endonuclease C terminal HTH_20 PF12840.7 gi|300712599|ref|YP_003738412.1| - 0.086 12.9 0.8 0.14 12.3 0.8 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AI-2E_transport PF01594.16 gi|300712601|ref|YP_003738414.1| - 4.8e-15 55.5 20.6 8e-15 54.8 20.6 1.3 1 0 0 1 1 1 1 AI-2E family transporter PadR PF03551.14 gi|300712602|ref|YP_003738415.1| - 2.2e-16 59.6 0.5 2.7e-16 59.3 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|300712602|ref|YP_003738415.1| - 0.0048 16.8 0.0 0.0077 16.2 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|300712602|ref|YP_003738415.1| - 0.0055 16.5 0.0 0.0072 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|300712602|ref|YP_003738415.1| - 0.013 15.9 0.1 0.018 15.5 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|300712602|ref|YP_003738415.1| - 0.041 13.8 0.1 0.56 10.1 0.1 2.2 1 1 0 1 1 1 0 MarR family DUF4364 PF14277.6 gi|300712602|ref|YP_003738415.1| - 0.079 12.7 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|300712602|ref|YP_003738415.1| - 0.12 12.6 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|300712602|ref|YP_003738415.1| - 0.13 12.1 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF5518 PF17647.1 gi|300712603|ref|YP_003738416.1| - 9.2e-18 64.5 39.0 1e-17 64.4 39.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF2070 PF09843.9 gi|300712603|ref|YP_003738416.1| - 1.2 7.3 7.3 1.4 7.1 7.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Prok-JAB PF14464.6 gi|300712605|ref|YP_003738418.1| - 0.00011 22.0 3.5 0.00023 20.9 3.5 1.6 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain SSF PF00474.17 gi|300712606|ref|YP_003738419.1| - 2.2e-27 95.9 37.8 2.9e-26 92.3 37.8 2.2 1 1 0 1 1 1 1 Sodium:solute symporter family MazE_antitoxin PF04014.18 gi|300712607|ref|YP_003738420.1| - 2.3e-07 30.6 0.0 3.9e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PhoU PF01895.19 gi|300712607|ref|YP_003738420.1| - 2.7e-06 27.8 0.2 2.8e-05 24.5 0.0 2.5 3 0 0 3 3 3 1 PhoU domain Arginase PF00491.21 gi|300712609|ref|YP_003738422.1| - 1.6e-76 257.5 0.1 1.9e-76 257.2 0.1 1.0 1 0 0 1 1 1 1 Arginase family CPBP PF02517.16 gi|300712610|ref|YP_003738423.1| - 7.3e-14 51.9 9.7 1.4e-13 51.1 9.7 1.8 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease YqhR PF11085.8 gi|300712610|ref|YP_003738423.1| - 1 9.2 6.0 4.8 7.1 6.0 2.1 1 1 0 1 1 1 0 Conserved membrane protein YqhR Penicil_amidase PF01804.18 gi|300712611|ref|YP_003738424.1| - 6e-198 660.0 2.5 6.7e-198 659.8 2.5 1.0 1 0 0 1 1 1 1 Penicillin amidase TrmB PF01978.19 gi|300712613|ref|YP_003738426.1| - 5e-08 32.7 0.0 8.6e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|300712613|ref|YP_003738426.1| - 0.001 18.8 0.6 0.0031 17.3 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|300712613|ref|YP_003738426.1| - 0.029 14.4 0.7 0.059 13.4 0.2 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|300712613|ref|YP_003738426.1| - 0.038 13.7 0.2 0.072 12.9 0.2 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|300712613|ref|YP_003738426.1| - 0.051 13.9 0.1 0.094 13.1 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor DUF308 PF03729.13 gi|300712614|ref|YP_003738427.1| - 5.6e-17 61.8 37.0 2.1e-08 34.4 9.9 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF2070 PF09843.9 gi|300712614|ref|YP_003738427.1| - 9.7 4.3 12.5 0.11 10.8 4.2 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) PhzC-PhzF PF02567.16 gi|300712615|ref|YP_003738428.1| - 7e-49 166.8 0.0 7.8e-49 166.6 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|300712615|ref|YP_003738428.1| - 0.069 13.3 0.0 0.25 11.5 0.0 1.8 2 0 0 2 2 2 0 Diaminopimelate epimerase CBFD_NFYB_HMF PF00808.23 gi|300712616|ref|YP_003738429.1| - 0.0011 19.2 0.1 0.0017 18.6 0.1 1.5 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DctP PF03480.13 gi|300712616|ref|YP_003738429.1| - 0.0018 17.6 0.1 0.0018 17.6 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DUF1931 PF09123.11 gi|300712616|ref|YP_003738429.1| - 0.0023 18.1 0.9 0.0024 18.0 0.9 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.24 gi|300712616|ref|YP_003738429.1| - 0.021 15.2 0.1 0.025 14.9 0.1 1.2 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 DUF1631 PF07793.11 gi|300712616|ref|YP_003738429.1| - 0.026 13.0 1.6 0.031 12.7 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) CHRD PF07452.12 gi|300712617|ref|YP_003738430.1| - 5.4e-13 49.9 0.0 2.8e-05 25.0 0.0 2.2 2 0 0 2 2 2 2 CHRD domain DUF4397 PF14344.6 gi|300712618|ref|YP_003738431.1| - 1.1e-33 116.6 0.0 2.1e-28 99.5 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) Cu-oxidase_3 PF07732.15 gi|300712620|ref|YP_003738433.1| - 1.2e-30 106.0 5.6 4.2e-08 33.2 0.0 8.3 7 1 1 8 8 8 5 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|300712620|ref|YP_003738433.1| - 8.4e-12 45.0 10.0 2.1e-05 24.3 2.6 5.0 5 1 0 5 5 5 3 Multicopper oxidase PadR PF03551.14 gi|300712621|ref|YP_003738434.1| - 5e-11 42.4 0.3 6.3e-11 42.1 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|300712621|ref|YP_003738434.1| - 0.00099 19.0 0.0 0.0018 18.1 0.0 1.5 1 1 0 1 1 1 1 MarR family TrmB PF01978.19 gi|300712621|ref|YP_003738434.1| - 0.016 15.1 0.1 0.025 14.5 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.11 gi|300712621|ref|YP_003738434.1| - 0.062 13.1 0.0 0.092 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) LysE PF01810.18 gi|300712622|ref|YP_003738435.1| - 4.9e-40 137.1 6.3 5.6e-40 136.9 6.3 1.0 1 0 0 1 1 1 1 LysE type translocator TerC PF03741.16 gi|300712622|ref|YP_003738435.1| - 0.001 18.7 2.4 0.0019 17.9 2.4 1.6 1 1 0 1 1 1 1 Integral membrane protein TerC family Mntp PF02659.15 gi|300712622|ref|YP_003738435.1| - 0.039 13.7 2.5 0.24 11.1 2.5 2.1 1 1 0 1 1 1 0 Putative manganese efflux pump HTH_10 PF04967.12 gi|300712624|ref|YP_003738437.1| - 6.3e-08 32.3 0.0 7.4e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|300712624|ref|YP_003738437.1| - 0.0029 17.4 0.1 0.0041 16.9 0.1 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Form_Nir_trans PF01226.17 gi|300712625|ref|YP_003738438.1| - 6.8e-41 140.2 23.4 7.6e-41 140.0 23.4 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter SNARE_assoc PF09335.11 gi|300712626|ref|YP_003738439.1| - 2.3e-24 86.2 4.1 2.3e-24 86.2 4.1 2.2 3 0 0 3 3 3 1 SNARE associated Golgi protein AI-2E_transport PF01594.16 gi|300712627|ref|YP_003738440.1| - 0.00045 19.5 2.6 0.00048 19.4 2.6 1.0 1 0 0 1 1 1 1 AI-2E family transporter AI-2E_transport PF01594.16 gi|300712628|ref|YP_003738441.1| - 0.15 11.2 10.0 0.28 10.3 10.0 1.5 1 1 0 1 1 1 0 AI-2E family transporter GTA_holin_3TM PF11351.8 gi|300712629|ref|YP_003738442.1| - 0.0075 16.8 2.5 0.014 15.9 1.4 2.0 2 0 0 2 2 2 1 Holin of 3TMs, for gene-transfer release AI-2E_transport PF01594.16 gi|300712629|ref|YP_003738442.1| - 0.026 13.7 13.4 0.21 10.7 13.4 1.9 1 1 0 1 1 1 0 AI-2E family transporter OrfB_Zn_ribbon PF07282.11 gi|300712630|ref|YP_003738443.1| - 0.004 17.0 0.1 0.006 16.5 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain LPG_synthase_TM PF03706.13 gi|300712631|ref|YP_003738444.1| - 2e-09 37.4 21.6 2.3e-09 37.2 21.6 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Na_Ca_ex PF01699.24 gi|300712632|ref|YP_003738445.1| - 1.4e-36 125.8 31.0 8.3e-20 71.3 14.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein GlpM PF06942.12 gi|300712632|ref|YP_003738445.1| - 0.0034 17.8 0.4 0.0034 17.8 0.4 2.8 3 0 0 3 3 3 1 GlpM protein DUF4234 PF14018.6 gi|300712632|ref|YP_003738445.1| - 0.073 13.2 0.9 3.2 7.9 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4234) XK-related PF09815.9 gi|300712632|ref|YP_003738445.1| - 0.13 11.3 5.9 2.2 7.3 0.2 2.3 2 0 0 2 2 2 0 XK-related protein DUF1508 PF07411.12 gi|300712633|ref|YP_003738446.1| - 2.3e-21 75.4 0.5 5.3e-21 74.2 0.2 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF1508) TauE PF01925.19 gi|300712634|ref|YP_003738447.1| - 3.9e-14 52.8 30.4 3.9e-14 52.8 30.4 1.6 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE ECF-ribofla_trS PF07155.12 gi|300712634|ref|YP_003738447.1| - 0.003 17.6 2.0 0.003 17.6 2.0 3.4 3 0 0 3 3 3 1 ECF-type riboflavin transporter, S component SdpI PF13630.6 gi|300712635|ref|YP_003738448.1| - 2.5e-17 62.7 1.4 2.5e-17 62.7 1.4 3.2 3 0 0 3 3 3 2 SdpI/YhfL protein family DUF1648 PF07853.11 gi|300712635|ref|YP_003738448.1| - 1.5e-11 43.8 0.6 1.5e-11 43.8 0.6 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) DUF4405 PF14358.6 gi|300712635|ref|YP_003738448.1| - 0.097 13.2 0.6 0.097 13.2 0.6 4.2 4 1 0 5 5 5 0 Domain of unknown function (DUF4405) PhoR PF11808.8 gi|300712635|ref|YP_003738448.1| - 0.1 13.0 0.0 0.1 13.0 0.0 3.1 3 1 0 3 3 3 0 Phosphate regulon sensor protein PhoR ABC_tran PF00005.27 gi|300712636|ref|YP_003738449.1| - 1.1e-13 51.9 0.0 1.7e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|300712636|ref|YP_003738449.1| - 2.2e-13 50.7 0.0 2.9e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|300712636|ref|YP_003738449.1| - 0.099 12.9 0.0 0.32 11.3 0.0 1.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit HHH PF00633.23 gi|300712638|ref|YP_003738451.1| - 0.00018 21.2 0.0 0.00029 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|300712638|ref|YP_003738451.1| - 0.02 15.5 0.0 0.04 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix domain Transposase_20 PF02371.16 gi|300712638|ref|YP_003738451.1| - 0.026 14.8 0.0 0.037 14.3 0.0 1.3 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family HHH_2 PF12826.7 gi|300712638|ref|YP_003738451.1| - 0.068 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|300712638|ref|YP_003738451.1| - 0.14 12.6 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix domain Methyltransf_11 PF08241.12 gi|300712640|ref|YP_003738453.1| - 5.1e-15 55.9 0.0 8.4e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|300712640|ref|YP_003738453.1| - 6.7e-13 49.2 0.0 1.4e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|300712640|ref|YP_003738453.1| - 1.3e-05 25.1 0.0 2.9e-05 24.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|300712640|ref|YP_003738453.1| - 6.3e-05 22.8 0.0 9.2e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|300712640|ref|YP_003738453.1| - 0.00032 19.9 0.0 0.0004 19.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.18 gi|300712640|ref|YP_003738453.1| - 0.00042 19.7 0.0 0.0007 19.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|300712640|ref|YP_003738453.1| - 0.052 14.3 0.0 0.096 13.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.16 gi|300712640|ref|YP_003738453.1| - 0.06 11.9 0.0 0.066 11.8 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|300712640|ref|YP_003738453.1| - 0.069 13.0 0.0 0.11 12.3 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase NNMT_PNMT_TEMT PF01234.17 gi|300712640|ref|YP_003738453.1| - 0.097 11.8 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family MTS PF05175.14 gi|300712640|ref|YP_003738453.1| - 0.16 11.5 0.0 1.1 8.8 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase small domain Sulfatase PF00884.23 gi|300712641|ref|YP_003738454.1| - 4.4e-20 72.3 0.0 6.4e-20 71.7 0.0 1.3 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|300712641|ref|YP_003738454.1| - 0.0012 18.5 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase HAT PF02184.16 gi|300712641|ref|YP_003738454.1| - 0.17 11.9 0.1 0.34 10.9 0.1 1.5 1 0 0 1 1 1 0 HAT (Half-A-TPR) repeat AAA_16 PF13191.6 gi|300712642|ref|YP_003738455.1| - 0.018 15.4 0.0 0.024 15.0 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|300712642|ref|YP_003738455.1| - 0.037 13.8 0.0 0.089 12.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|300712642|ref|YP_003738455.1| - 0.17 12.2 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Nramp PF01566.18 gi|300712643|ref|YP_003738456.1| - 2.5e-64 217.5 37.9 4.1e-64 216.8 37.9 1.3 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein PhyH PF05721.13 gi|300712644|ref|YP_003738457.1| - 1.3e-28 100.7 0.1 1.6e-28 100.4 0.1 1.1 1 0 0 1 1 1 1 Phytanoyl-CoA dioxygenase (PhyH) FAD_binding_7 PF03441.14 gi|300712647|ref|YP_003738460.1| - 3.8e-38 131.0 0.0 5.2e-38 130.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase GAF_2 PF13185.6 gi|300712647|ref|YP_003738460.1| - 0.013 15.8 0.0 0.022 15.1 0.0 1.4 1 0 0 1 1 1 0 GAF domain Peptidase_M14 PF00246.24 gi|300712649|ref|YP_003738462.1| - 4.8e-13 49.6 0.0 1e-12 48.5 0.0 1.5 1 0 0 1 1 1 1 Zinc carboxypeptidase DDOST_48kD PF03345.14 gi|300712649|ref|YP_003738462.1| - 0.0081 15.0 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Oligosaccharyltransferase 48 kDa subunit beta DUF1729 PF08354.10 gi|300712649|ref|YP_003738462.1| - 0.15 10.9 0.1 0.28 10.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1729) Acetyltransf_3 PF13302.7 gi|300712654|ref|YP_003738467.1| - 1.6e-15 58.0 0.0 2.1e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|300712654|ref|YP_003738467.1| - 0.00011 22.4 0.0 0.00018 21.6 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|300712654|ref|YP_003738467.1| - 0.017 15.3 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|300712654|ref|YP_003738467.1| - 0.066 12.9 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain AP_endonuc_2 PF01261.24 gi|300712655|ref|YP_003738468.1| - 4e-10 39.5 0.3 1.9e-06 27.5 0.1 2.4 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel ComA PF02679.15 gi|300712655|ref|YP_003738468.1| - 0.088 12.3 0.0 0.48 9.9 0.0 2.0 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) DUF3426 PF11906.8 gi|300712656|ref|YP_003738469.1| - 0.002 18.3 0.0 0.2 11.8 0.0 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF3426) Amidase PF01425.21 gi|300712657|ref|YP_003738470.1| - 2.1e-14 53.3 0.0 4.6e-10 39.1 0.0 2.1 1 1 1 2 2 2 2 Amidase Amidase PF01425.21 gi|300712659|ref|YP_003738472.1| - 8.8e-09 34.8 0.0 8.8e-09 34.8 0.0 1.1 1 0 0 1 1 1 1 Amidase FAA_hydrolase PF01557.18 gi|300712660|ref|YP_003738473.1| - 1e-05 25.3 0.1 1.4e-05 24.8 0.1 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Cas_Cas02710 PF09670.10 gi|300712661|ref|YP_003738474.1| - 1.9e-05 23.6 0.0 2.7e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF4364 PF14277.6 gi|300712661|ref|YP_003738474.1| - 0.003 17.3 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) ACT PF01842.25 gi|300712661|ref|YP_003738474.1| - 0.076 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 ACT domain AAA_12 PF13087.6 gi|300712662|ref|YP_003738475.1| - 7.1e-41 140.0 0.0 9.5e-41 139.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|300712662|ref|YP_003738475.1| - 5.7e-12 46.0 0.0 1.2e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|300712662|ref|YP_003738475.1| - 0.00073 19.3 0.0 0.0031 17.3 0.0 1.9 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|300712662|ref|YP_003738475.1| - 0.088 12.5 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain UvrD_C_2 PF13538.6 gi|300712662|ref|YP_003738475.1| - 0.15 11.9 0.2 0.75 9.7 0.2 2.2 1 1 0 1 1 1 0 UvrD-like helicase C-terminal domain MazG-like PF12643.7 gi|300712664|ref|YP_003738477.1| - 9.4e-13 48.2 1.8 1.1e-12 48.0 1.8 1.1 1 0 0 1 1 1 1 MazG-like family MazG PF03819.17 gi|300712664|ref|YP_003738477.1| - 4.4e-09 36.4 1.3 7.4e-09 35.7 1.3 1.4 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|300712664|ref|YP_003738477.1| - 0.00018 21.9 0.4 0.00025 21.4 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase DUF2075 PF09848.9 gi|300712665|ref|YP_003738478.1| - 3.8e-101 338.9 0.0 4.8e-101 338.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|300712665|ref|YP_003738478.1| - 4.2e-06 27.1 0.2 7.1e-05 23.1 0.2 2.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|300712665|ref|YP_003738478.1| - 5.7e-05 23.5 0.0 0.00014 22.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|300712665|ref|YP_003738478.1| - 6.5e-05 23.0 0.1 0.1 12.6 0.0 2.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|300712665|ref|YP_003738478.1| - 7e-05 23.3 0.3 0.00043 20.7 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|300712665|ref|YP_003738478.1| - 0.0013 19.1 0.0 0.0034 17.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain GvpD PF07088.11 gi|300712665|ref|YP_003738478.1| - 0.0044 15.7 0.0 0.0068 15.1 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein NERD PF08378.11 gi|300712665|ref|YP_003738478.1| - 0.0047 17.4 0.0 0.022 15.2 0.0 2.1 2 0 0 2 2 2 1 Nuclease-related domain IstB_IS21 PF01695.17 gi|300712665|ref|YP_003738478.1| - 0.006 16.3 0.0 0.056 13.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|300712665|ref|YP_003738478.1| - 0.0061 16.3 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|300712665|ref|YP_003738478.1| - 0.01 15.6 0.0 0.032 14.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|300712665|ref|YP_003738478.1| - 0.016 14.6 0.2 0.05 12.9 0.2 1.8 1 1 0 1 1 1 0 KaiC Viral_helicase1 PF01443.18 gi|300712665|ref|YP_003738478.1| - 0.038 13.7 0.0 3 7.5 0.0 2.6 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|300712665|ref|YP_003738478.1| - 0.12 12.4 0.1 8.6 6.4 0.0 2.7 1 1 1 2 2 2 0 AAA domain Torsin PF06309.11 gi|300712665|ref|YP_003738478.1| - 0.16 12.1 0.0 0.48 10.5 0.0 1.8 1 0 0 1 1 1 0 Torsin NACHT PF05729.12 gi|300712665|ref|YP_003738478.1| - 0.16 11.9 0.0 0.75 9.7 0.0 2.1 3 0 0 3 3 3 0 NACHT domain AAA_7 PF12775.7 gi|300712665|ref|YP_003738478.1| - 0.19 11.2 0.0 0.51 9.8 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region HTH_35 PF13693.6 gi|300712668|ref|YP_003738481.1| - 0.033 14.2 0.1 8.6 6.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding FGGY_N PF00370.21 gi|300712669|ref|YP_003738482.1| - 1.3e-54 185.4 0.0 1.9e-54 184.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|300712669|ref|YP_003738482.1| - 7.4e-32 110.7 0.3 1.6e-31 109.6 0.1 1.7 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Bgal_small_N PF02929.17 gi|300712672|ref|YP_003738485.1| - 6.9e-60 202.7 0.0 1.2e-59 201.9 0.0 1.4 1 0 0 1 1 1 1 Beta galactosidase small chain Glyco_hydro_2_C PF02836.17 gi|300712672|ref|YP_003738485.1| - 1.1e-53 182.3 0.0 1.4e-45 155.7 0.0 2.5 2 1 0 2 2 2 2 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.18 gi|300712672|ref|YP_003738485.1| - 3.1e-30 105.3 1.3 3.6e-29 101.8 1.3 2.7 2 1 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain DUF4981 PF16353.5 gi|300712672|ref|YP_003738485.1| - 2.5e-21 76.0 0.0 1.8e-20 73.2 0.0 2.7 1 0 0 1 1 1 1 Domain of unknown function(DUF4981) Laminin_G_3 PF13385.6 gi|300712672|ref|YP_003738485.1| - 3.5e-15 56.5 0.0 1.1e-14 54.9 0.0 1.9 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Glyco_hydro_2 PF00703.21 gi|300712672|ref|YP_003738485.1| - 1.6e-12 48.1 0.0 3.9e-12 46.8 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 DNA_pol_B_N PF18094.1 gi|300712672|ref|YP_003738485.1| - 0.17 12.4 0.4 29 5.3 0.0 3.4 2 1 1 3 3 3 0 DNA polymerase beta N-terminal domain TAT_signal PF10518.9 gi|300712672|ref|YP_003738485.1| - 0.47 10.4 5.6 1.6 8.7 5.6 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HTH_10 PF04967.12 gi|300712673|ref|YP_003738486.1| - 4.3e-15 55.3 0.1 7.1e-15 54.6 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.6 gi|300712673|ref|YP_003738486.1| - 8.1e-05 22.4 0.0 0.00022 20.9 0.0 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|300712673|ref|YP_003738486.1| - 0.0017 18.2 0.0 0.0039 17.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|300712673|ref|YP_003738486.1| - 0.0027 17.2 0.0 0.0059 16.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|300712673|ref|YP_003738486.1| - 0.0037 17.0 0.1 0.0074 16.1 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_1_2 PF13022.6 gi|300712673|ref|YP_003738486.1| - 0.007 16.5 0.1 0.011 15.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Sigma70_r4_2 PF08281.12 gi|300712673|ref|YP_003738486.1| - 0.0078 15.9 0.1 0.074 12.7 0.1 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|300712673|ref|YP_003738486.1| - 0.012 15.4 0.1 0.029 14.2 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_38 PF13936.6 gi|300712673|ref|YP_003738486.1| - 0.023 14.5 0.4 2.1 8.2 0.0 2.9 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|300712673|ref|YP_003738486.1| - 0.026 14.6 0.2 0.065 13.4 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|300712673|ref|YP_003738486.1| - 0.057 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_20 PF12840.7 gi|300712673|ref|YP_003738486.1| - 0.094 12.8 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|300712673|ref|YP_003738486.1| - 0.12 12.2 0.2 0.22 11.4 0.2 1.6 1 1 0 1 1 1 0 ECF sigma factor GntR PF00392.21 gi|300712673|ref|YP_003738486.1| - 0.53 10.0 1.9 1 9.1 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Lactamase_B_2 PF12706.7 gi|300712674|ref|YP_003738487.1| - 7.2e-15 55.0 0.2 9.9e-15 54.6 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|300712674|ref|YP_003738487.1| - 4.6e-11 42.9 0.1 5.9e-11 42.5 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|300712674|ref|YP_003738487.1| - 0.00012 22.2 6.2 0.00012 22.2 2.7 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily HNH_2 PF13391.6 gi|300712675|ref|YP_003738488.1| - 4.7e-09 36.2 0.4 1.8e-08 34.4 0.4 2.0 1 1 0 1 1 1 1 HNH endonuclease HNH PF01844.23 gi|300712675|ref|YP_003738488.1| - 0.00037 20.6 0.5 0.0007 19.7 0.5 1.5 1 0 0 1 1 1 1 HNH endonuclease EVE PF01878.18 gi|300712675|ref|YP_003738488.1| - 0.0042 17.1 0.0 0.01 15.8 0.0 1.6 1 1 0 1 1 1 1 EVE domain HNH_5 PF14279.6 gi|300712675|ref|YP_003738488.1| - 0.046 13.6 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 HNH endonuclease HNH_4 PF13395.6 gi|300712675|ref|YP_003738488.1| - 0.073 13.0 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 HNH endonuclease DUF3347 PF11827.8 gi|300712675|ref|YP_003738488.1| - 0.082 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) Nmad3 PF18754.1 gi|300712675|ref|YP_003738488.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Nucleotide modification associated domain 3 MTES_1575 PF18741.1 gi|300712677|ref|YP_003738490.1| - 1.3e-34 118.2 0.0 3.6e-34 116.8 0.0 1.8 1 0 0 1 1 1 1 REase_MTES_1575 DUF4011 PF13195.6 gi|300712677|ref|YP_003738490.1| - 1e-31 110.0 1.8 1e-31 110.0 1.8 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF4011) AAA_11 PF13086.6 gi|300712677|ref|YP_003738490.1| - 1.3e-15 57.9 11.2 3.4e-08 33.6 4.1 2.9 2 2 0 2 2 2 2 AAA domain AAA_12 PF13087.6 gi|300712677|ref|YP_003738490.1| - 2.6e-15 56.6 0.0 2.7e-14 53.3 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|300712677|ref|YP_003738490.1| - 8.7e-09 35.4 3.2 1.6e-05 24.7 0.2 3.0 3 0 0 3 3 3 2 AAA domain DUF2075 PF09848.9 gi|300712677|ref|YP_003738490.1| - 4e-08 32.9 0.5 0.0012 18.1 0.2 2.7 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|300712677|ref|YP_003738490.1| - 7.6e-08 32.8 0.9 5.4e-05 23.5 0.1 3.2 2 1 0 2 2 2 1 AAA domain DUF559 PF04480.12 gi|300712677|ref|YP_003738490.1| - 5e-05 23.1 0.0 0.00014 21.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF559) DUF3320 PF11784.8 gi|300712677|ref|YP_003738490.1| - 7.7e-05 22.6 0.1 0.007 16.3 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3320) ResIII PF04851.15 gi|300712677|ref|YP_003738490.1| - 0.00052 20.0 0.9 0.082 12.9 0.0 3.3 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.18 gi|300712677|ref|YP_003738490.1| - 0.0015 18.3 0.4 0.33 10.7 0.1 3.0 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase Helicase_RecD PF05127.14 gi|300712677|ref|YP_003738490.1| - 0.0037 17.1 0.4 0.4 10.5 0.0 3.0 3 0 0 3 3 2 1 Helicase Adeno_IVa2 PF02456.15 gi|300712677|ref|YP_003738490.1| - 0.004 16.0 0.0 0.0074 15.1 0.0 1.3 1 0 0 1 1 1 1 Adenovirus IVa2 protein DUF2779 PF11074.8 gi|300712677|ref|YP_003738490.1| - 0.0088 16.5 1.1 0.061 13.8 1.1 2.5 1 0 0 1 1 1 1 Domain of unknown function(DUF2779) PhoH PF02562.16 gi|300712677|ref|YP_003738490.1| - 0.021 14.3 0.4 2.6 7.5 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein DEAD PF00270.29 gi|300712677|ref|YP_003738490.1| - 0.045 13.5 0.6 0.89 9.3 0.0 3.0 3 0 0 3 3 3 0 DEAD/DEAH box helicase RuvB_N PF05496.12 gi|300712677|ref|YP_003738490.1| - 0.046 13.5 0.0 1.2 8.9 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|300712677|ref|YP_003738490.1| - 0.048 13.4 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|300712677|ref|YP_003738490.1| - 0.06 13.6 0.0 0.06 13.6 0.0 3.6 4 0 0 4 4 4 0 AAA domain AAA PF00004.29 gi|300712677|ref|YP_003738490.1| - 0.11 12.9 0.9 0.92 9.9 0.0 2.9 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|300712677|ref|YP_003738490.1| - 0.11 12.5 0.1 0.99 9.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|300712677|ref|YP_003738490.1| - 0.92 9.9 7.1 0.86 10.0 1.4 3.6 1 1 1 2 2 2 0 AAA ATPase domain ORF6C PF10552.9 gi|300712677|ref|YP_003738490.1| - 1.2 9.3 4.1 4.2 7.5 0.0 3.8 4 0 0 4 4 4 0 ORF6C domain Syntaxin-6_N PF09177.11 gi|300712677|ref|YP_003738490.1| - 8.9 6.9 18.3 0.052 14.1 1.4 5.2 5 1 0 5 5 4 0 Syntaxin 6, N-terminal UvrD-helicase PF00580.21 gi|300712678|ref|YP_003738491.1| - 1.2e-63 215.5 0.1 2.4e-63 214.6 0.1 1.5 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|300712678|ref|YP_003738491.1| - 1.5e-27 96.7 0.0 1.6e-26 93.4 0.0 2.4 1 1 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|300712678|ref|YP_003738491.1| - 4.9e-20 72.2 0.0 2.5e-17 63.3 0.0 3.3 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|300712678|ref|YP_003738491.1| - 4e-08 33.0 0.5 0.0076 16.0 0.0 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|300712678|ref|YP_003738491.1| - 1.2e-07 31.7 1.0 9.7e-05 22.2 0.2 2.5 2 0 0 2 2 2 2 AAA domain PDDEXK_1 PF12705.7 gi|300712678|ref|YP_003738491.1| - 3.2e-06 27.3 3.1 3.4e-06 27.2 0.1 2.6 3 0 0 3 3 3 1 PD-(D/E)XK nuclease superfamily AAA_22 PF13401.6 gi|300712678|ref|YP_003738491.1| - 1e-05 25.8 1.8 0.0058 16.9 0.3 3.4 2 1 0 2 2 2 1 AAA domain DUF2800 PF10926.8 gi|300712678|ref|YP_003738491.1| - 0.00039 19.8 0.0 0.00081 18.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) Viral_helicase1 PF01443.18 gi|300712678|ref|YP_003738491.1| - 0.0005 19.9 1.1 3.5 7.3 0.0 4.2 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 gi|300712678|ref|YP_003738491.1| - 0.0022 18.4 3.4 0.48 10.8 0.1 3.3 1 1 2 3 3 3 2 AAA ATPase domain ResIII PF04851.15 gi|300712678|ref|YP_003738491.1| - 0.017 15.1 1.4 0.024 14.7 0.2 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_11 PF13086.6 gi|300712678|ref|YP_003738491.1| - 0.094 12.5 0.0 18 5.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain PDDEXK_1 PF12705.7 gi|300712679|ref|YP_003738492.1| - 4.4e-29 102.2 0.0 1.5e-28 100.4 0.0 2.0 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exonuc_V_gamma PF04257.14 gi|300712679|ref|YP_003738492.1| - 0.00044 18.6 0.0 0.025 12.8 0.0 2.2 1 1 0 2 2 2 2 Exodeoxyribonuclease V, gamma subunit NucS PF01939.16 gi|300712680|ref|YP_003738493.1| - 9.2e-06 25.2 0.1 1.6e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 Endonuclease NucS CBP4 PF07960.11 gi|300712681|ref|YP_003738494.1| - 0.023 14.5 0.5 0.023 14.5 0.5 1.7 2 0 0 2 2 2 0 CBP4 Atg14 PF10186.9 gi|300712681|ref|YP_003738494.1| - 0.03 13.4 0.4 0.06 12.4 0.4 1.4 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 PspB PF06667.12 gi|300712681|ref|YP_003738494.1| - 0.045 13.8 1.4 0.045 13.8 1.4 2.0 2 0 0 2 2 2 0 Phage shock protein B DUF2730 PF10805.8 gi|300712681|ref|YP_003738494.1| - 0.098 12.8 2.2 0.19 11.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DivIC PF04977.15 gi|300712681|ref|YP_003738494.1| - 0.12 12.2 2.0 6 6.7 0.8 2.7 2 0 0 2 2 2 0 Septum formation initiator PspA_IM30 PF04012.12 gi|300712681|ref|YP_003738494.1| - 0.59 9.7 6.4 0.079 12.5 1.4 1.9 2 0 0 2 2 2 0 PspA/IM30 family TolA_bind_tri PF16331.5 gi|300712681|ref|YP_003738494.1| - 1 9.5 11.3 1.7 8.8 1.5 2.8 3 0 0 3 3 3 0 TolA binding protein trimerisation DUF4407 PF14362.6 gi|300712681|ref|YP_003738494.1| - 1.4 8.2 5.6 0.41 10.0 3.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Csm1_N PF18504.1 gi|300712681|ref|YP_003738494.1| - 1.6 9.2 7.7 3.6 8.0 2.0 2.6 2 0 0 2 2 2 0 Csm1 N-terminal domain CREPT PF16566.5 gi|300712681|ref|YP_003738494.1| - 1.7 8.8 7.4 0.76 9.9 1.0 2.5 3 0 0 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour Spc24 PF08286.11 gi|300712681|ref|YP_003738494.1| - 5.8 7.2 7.0 2.9 8.2 1.0 2.7 3 0 0 3 3 3 0 Spc24 subunit of Ndc80 ZapB PF06005.12 gi|300712681|ref|YP_003738494.1| - 9 6.8 10.4 0.15 12.5 1.0 2.5 3 0 0 3 3 3 0 Cell division protein ZapB Penicil_amidase PF01804.18 gi|300712683|ref|YP_003738496.1| - 3.8e-195 650.8 4.0 4.2e-195 650.6 4.0 1.0 1 0 0 1 1 1 1 Penicillin amidase ACAS_N PF16177.5 gi|300712683|ref|YP_003738496.1| - 0.0096 15.8 0.4 5.2 7.1 0.0 2.6 2 0 0 2 2 2 2 Acetyl-coenzyme A synthetase N-terminus Glyco_hydro_97 PF10566.9 gi|300712684|ref|YP_003738497.1| - 1e-89 300.6 0.5 1.8e-89 299.8 0.5 1.4 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 gi|300712684|ref|YP_003738497.1| - 1.4e-49 168.7 0.0 2.4e-49 167.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal GH97_C PF14509.6 gi|300712684|ref|YP_003738497.1| - 1.4e-26 92.5 0.0 5.9e-26 90.5 0.0 2.2 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation CBM_6 PF03422.15 gi|300712684|ref|YP_003738497.1| - 0.001 19.4 1.2 0.0065 16.8 1.2 2.5 1 0 0 1 1 1 1 Carbohydrate binding module (family 6) CBM_35 PF16990.5 gi|300712684|ref|YP_003738497.1| - 0.0043 17.3 0.5 0.07 13.4 0.2 2.7 2 1 0 2 2 2 1 Carbohydrate binding module (family 35) Endotoxin_C PF03944.14 gi|300712684|ref|YP_003738497.1| - 0.047 14.0 0.0 0.17 12.2 0.0 1.9 1 0 0 1 1 1 0 delta endotoxin CarboxypepD_reg PF13620.6 gi|300712684|ref|YP_003738497.1| - 0.051 13.8 11.5 3.4 8.0 0.3 5.6 5 0 0 5 5 5 0 Carboxypeptidase regulatory-like domain CARDB PF07705.11 gi|300712684|ref|YP_003738497.1| - 0.58 10.4 3.8 9.9 6.5 0.0 3.2 3 0 0 3 3 3 0 CARDB Fic PF02661.18 gi|300712686|ref|YP_003738499.1| - 2e-08 35.0 0.0 8.3e-08 33.0 0.0 1.9 1 1 0 1 1 1 1 Fic/DOC family CCD PF07860.11 gi|300712688|ref|YP_003738501.1| - 0.0082 16.2 0.1 0.0087 16.1 0.1 1.1 1 0 0 1 1 1 1 WisP family C-Terminal Region Uds1 PF15456.6 gi|300712688|ref|YP_003738501.1| - 0.021 15.0 1.7 0.021 15.0 1.7 1.0 1 0 0 1 1 1 0 Up-regulated During Septation PspB PF06667.12 gi|300712688|ref|YP_003738501.1| - 0.044 13.8 0.4 0.049 13.7 0.4 1.1 1 0 0 1 1 1 0 Phage shock protein B DUF4140 PF13600.6 gi|300712688|ref|YP_003738501.1| - 0.055 13.9 1.5 0.056 13.9 1.5 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF4763 PF15960.5 gi|300712688|ref|YP_003738501.1| - 0.1 11.9 2.4 0.1 11.9 2.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) DUF1192 PF06698.11 gi|300712688|ref|YP_003738501.1| - 0.12 12.5 3.3 0.13 12.4 3.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) LtrA PF06772.11 gi|300712689|ref|YP_003738502.1| - 2.6e-96 323.0 40.1 2.9e-96 322.8 40.1 1.0 1 0 0 1 1 1 1 Bacterial low temperature requirement A protein (LtrA) MraZ PF02381.18 gi|300712690|ref|YP_003738503.1| - 0.0051 16.8 0.4 0.09 12.8 0.0 2.2 2 0 0 2 2 2 1 MraZ protein, putative antitoxin-like DUF1474 PF07342.11 gi|300712690|ref|YP_003738503.1| - 0.034 14.7 0.0 0.038 14.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1474) MazE_antitoxin PF04014.18 gi|300712690|ref|YP_003738503.1| - 0.051 13.5 0.1 0.15 12.0 0.1 1.8 1 1 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin kleA_kleC PF17383.2 gi|300712690|ref|YP_003738503.1| - 0.088 13.1 0.5 0.13 12.7 0.5 1.2 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A Hydantoinase_B PF02538.14 gi|300712692|ref|YP_003738505.1| - 6.6e-140 466.9 0.5 9e-140 466.5 0.5 1.2 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|300712693|ref|YP_003738506.1| - 1.6e-95 319.7 1.8 3.5e-94 315.3 0.2 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|300712693|ref|YP_003738506.1| - 1.5e-48 164.9 5.0 2e-48 164.5 0.6 2.9 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|300712693|ref|YP_003738506.1| - 2.7e-05 23.0 4.0 0.0017 17.1 0.2 3.0 2 1 1 3 3 3 2 MutL protein ROK PF00480.20 gi|300712693|ref|YP_003738506.1| - 0.0099 15.4 0.2 0.038 13.5 0.0 2.1 2 0 0 2 2 2 1 ROK family PEP-utilizers PF00391.23 gi|300712693|ref|YP_003738506.1| - 0.026 14.2 0.4 0.081 12.7 0.4 1.8 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain FtsA PF14450.6 gi|300712693|ref|YP_003738506.1| - 0.038 14.4 0.4 0.17 12.3 0.0 2.3 3 0 0 3 3 3 0 Cell division protein FtsA Benyvirus_P25 PF05744.11 gi|300712693|ref|YP_003738506.1| - 0.06 12.6 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Benyvirus P25/P26 protein BcrAD_BadFG PF01869.20 gi|300712693|ref|YP_003738506.1| - 0.068 12.6 0.3 0.25 10.8 0.0 2.1 2 1 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family SKI PF01202.22 gi|300712693|ref|YP_003738506.1| - 0.11 12.6 0.8 1.5 8.9 0.2 2.8 3 0 0 3 3 3 0 Shikimate kinase SprT-like PF10263.9 gi|300712694|ref|YP_003738507.1| - 7.6e-14 51.5 0.4 1.1e-13 51.0 0.4 1.2 1 0 0 1 1 1 1 SprT-like family Zn_ribbon_SprT PF17283.2 gi|300712694|ref|YP_003738507.1| - 0.015 15.2 2.2 0.029 14.3 2.2 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain BSP PF04450.12 gi|300712694|ref|YP_003738507.1| - 0.022 14.5 0.2 0.029 14.2 0.2 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria zinc_ribbon_10 PF10058.9 gi|300712694|ref|YP_003738507.1| - 0.039 13.7 2.4 0.066 13.0 2.4 1.4 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein SWIM PF04434.17 gi|300712695|ref|YP_003738508.1| - 0.037 13.7 0.1 0.037 13.7 0.1 2.2 2 0 0 2 2 2 0 SWIM zinc finger HTH_34 PF13601.6 gi|300712696|ref|YP_003738509.1| - 7.3e-06 26.1 0.0 1.3e-05 25.3 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|300712696|ref|YP_003738509.1| - 0.00042 20.4 0.0 0.00059 20.0 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation HTH_5 PF01022.20 gi|300712696|ref|YP_003738509.1| - 0.0009 19.1 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|300712696|ref|YP_003738509.1| - 0.0011 18.7 0.1 0.0025 17.6 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rio2_N PF09202.11 gi|300712696|ref|YP_003738509.1| - 0.003 17.7 0.0 0.0043 17.2 0.0 1.4 1 1 0 1 1 1 1 Rio2, N-terminal PadR PF03551.14 gi|300712696|ref|YP_003738509.1| - 0.01 15.8 0.1 0.021 14.8 0.1 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|300712696|ref|YP_003738509.1| - 0.012 15.6 0.1 0.028 14.5 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|300712696|ref|YP_003738509.1| - 0.013 15.3 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|300712696|ref|YP_003738509.1| - 0.042 13.8 0.0 0.26 11.3 0.0 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.9 gi|300712696|ref|YP_003738509.1| - 0.05 13.9 0.1 0.055 13.8 0.1 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF505 PF04458.12 gi|300712696|ref|YP_003738509.1| - 0.097 11.0 0.1 1.1 7.6 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF505) MarR PF01047.22 gi|300712696|ref|YP_003738509.1| - 0.14 12.1 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF4932 PF16286.5 gi|300712698|ref|YP_003738511.1| - 0.016 14.5 0.0 0.019 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4932) FCD PF07729.12 gi|300712698|ref|YP_003738511.1| - 0.039 14.4 0.3 0.056 13.9 0.3 1.2 1 0 0 1 1 1 0 FCD domain PAP2 PF01569.21 gi|300712699|ref|YP_003738512.1| - 1.4e-09 37.8 3.6 1.4e-09 37.8 3.6 2.4 2 1 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|300712699|ref|YP_003738512.1| - 3.1e-05 23.7 4.9 3.1e-05 23.7 4.9 1.8 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|300712699|ref|YP_003738512.1| - 0.007 16.9 1.8 0.013 16.0 1.8 1.4 1 0 0 1 1 1 1 PAP2 superfamily C-terminal TrmB PF01978.19 gi|300712701|ref|YP_003738514.1| - 0.00026 20.8 0.0 0.00054 19.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ArAE_2_N PF10337.9 gi|300712701|ref|YP_003738514.1| - 0.015 14.3 0.5 0.02 13.9 0.5 1.1 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal PspB PF06667.12 gi|300712701|ref|YP_003738514.1| - 0.042 13.9 0.0 0.091 12.8 0.0 1.5 1 0 0 1 1 1 0 Phage shock protein B HTH_11 PF08279.12 gi|300712701|ref|YP_003738514.1| - 0.046 13.7 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|300712701|ref|YP_003738514.1| - 0.14 12.5 0.0 0.37 11.2 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.6 gi|300712701|ref|YP_003738514.1| - 0.15 12.1 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF148 PF02520.17 gi|300712701|ref|YP_003738514.1| - 0.25 11.5 2.4 12 6.0 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function DUF148 NrfD PF03916.14 gi|300712702|ref|YP_003738515.1| - 0.18 11.4 6.4 0.22 11.1 6.4 1.0 1 0 0 1 1 1 0 Polysulphide reductase, NrfD UPF0261 PF06792.11 gi|300712703|ref|YP_003738516.1| - 1.4e-172 574.2 5.0 1.6e-172 574.0 5.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0261) HisG PF01634.18 gi|300712703|ref|YP_003738516.1| - 0.075 13.0 0.1 0.29 11.1 0.1 1.9 2 0 0 2 2 2 0 ATP phosphoribosyltransferase DUF1264 PF06884.11 gi|300712703|ref|YP_003738516.1| - 0.17 11.5 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1264) PEP_hydrolase PF09370.10 gi|300712704|ref|YP_003738517.1| - 1.3e-128 427.9 0.4 1.5e-128 427.7 0.4 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate hydrolase-like NMO PF03060.15 gi|300712704|ref|YP_003738517.1| - 0.0052 16.2 0.1 0.0077 15.7 0.1 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase Glyco_hydro_25 PF01183.20 gi|300712704|ref|YP_003738517.1| - 0.095 12.9 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 25 LOR PF04525.12 gi|300712705|ref|YP_003738518.1| - 1.1e-07 31.6 0.5 0.00025 20.7 0.1 3.0 1 1 1 3 3 3 3 LURP-one-related Glyco_hydro_97 PF10566.9 gi|300712708|ref|YP_003738521.1| - 4.4e-62 209.9 2.7 1.1e-61 208.6 2.7 1.7 1 1 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 gi|300712708|ref|YP_003738521.1| - 1.1e-48 165.8 0.0 1.8e-48 165.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal GH97_C PF14509.6 gi|300712708|ref|YP_003738521.1| - 6.1e-24 84.1 0.0 3.7e-23 81.6 0.0 2.3 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation PD40 PF07676.12 gi|300712709|ref|YP_003738522.1| - 3.8e-44 147.8 30.7 1.8e-07 30.9 1.6 11.7 11 0 0 11 11 11 8 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|300712709|ref|YP_003738522.1| - 1.7e-22 79.7 5.1 0.0041 15.9 0.0 7.1 4 2 2 6 6 6 6 Dipeptidyl peptidase IV (DPP IV) N-terminal region Amidohydro_1 PF01979.20 gi|300712709|ref|YP_003738522.1| - 1.4e-11 44.4 0.1 1.3e-09 37.9 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|300712709|ref|YP_003738522.1| - 5.7e-10 39.3 0.1 1.2e-05 25.1 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Peptidase_S9_N PF02897.15 gi|300712709|ref|YP_003738522.1| - 0.00036 19.5 5.4 0.36 9.6 0.1 3.4 3 1 0 3 3 3 2 Prolyl oligopeptidase, N-terminal beta-propeller domain Proteasome_A_N PF10584.9 gi|300712709|ref|YP_003738522.1| - 2.1 8.1 12.4 59 3.5 0.1 6.4 6 0 0 6 6 6 0 Proteasome subunit A N-terminal signature MR_MLE_C PF13378.6 gi|300712710|ref|YP_003738523.1| - 1.2e-62 211.3 1.3 1.5e-62 211.1 0.6 1.4 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|300712710|ref|YP_003738523.1| - 1.3e-15 57.7 0.0 5.1e-14 52.5 0.0 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PQQ_2 PF13360.6 gi|300712713|ref|YP_003738526.1| - 2e-23 83.2 5.3 1.8e-15 57.2 1.1 2.7 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|300712713|ref|YP_003738526.1| - 6.7e-17 61.4 14.7 0.0015 19.0 0.0 5.8 5 1 0 5 5 5 5 PQQ-like domain PQQ PF01011.21 gi|300712713|ref|YP_003738526.1| - 9.2e-11 41.1 4.8 0.046 13.7 0.1 5.4 5 0 0 5 5 5 3 PQQ enzyme repeat Peripla_BP_2 PF01497.18 gi|300712713|ref|YP_003738526.1| - 0.036 13.6 0.0 0.054 13.1 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein MG4 PF17789.1 gi|300712714|ref|YP_003738527.1| - 7e-10 38.9 3.9 1.8e-09 37.6 0.5 3.1 3 1 0 4 4 4 1 Macroglobulin domain MG4 CarboxypepD_reg PF13620.6 gi|300712714|ref|YP_003738527.1| - 1.2e-08 35.1 9.5 0.023 15.0 3.1 3.9 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|300712714|ref|YP_003738527.1| - 1.9e-07 30.9 4.4 1.9e-07 30.9 4.4 4.8 5 0 0 5 5 5 1 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|300712714|ref|YP_003738527.1| - 6.3e-05 23.2 9.1 0.00037 20.7 4.5 3.3 2 1 1 3 3 3 1 Invasin, domain 3 Glyco_hydro2_C5 PF18565.1 gi|300712714|ref|YP_003738527.1| - 0.031 14.1 0.2 0.17 11.8 0.2 2.3 1 0 0 1 1 1 0 Glycoside hydrolase family 2 C-terminal domain 5 DUF824 PF05688.11 gi|300712714|ref|YP_003738527.1| - 0.094 12.6 0.6 0.094 12.6 0.6 3.1 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) SPX PF03105.19 gi|300712714|ref|YP_003738527.1| - 0.97 9.3 20.0 1.4 8.8 20.0 1.4 1 0 0 1 1 1 0 SPX domain Macoilin PF09726.9 gi|300712714|ref|YP_003738527.1| - 3 6.3 14.1 3.7 6.0 14.1 1.1 1 0 0 1 1 1 0 Macoilin family Utp14 PF04615.13 gi|300712714|ref|YP_003738527.1| - 7.2 5.1 19.0 10 4.5 19.0 1.2 1 0 0 1 1 1 0 Utp14 protein DNA_pol_B PF00136.21 gi|300712715|ref|YP_003738528.1| - 3.8e-29 101.7 0.0 1.5e-28 99.7 0.0 1.9 1 1 0 1 1 1 1 DNA polymerase family B BKACE PF05853.12 gi|300712715|ref|YP_003738528.1| - 0.091 12.0 0.0 0.23 10.7 0.0 1.7 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme Sugarporin_N PF11471.8 gi|300712716|ref|YP_003738529.1| - 0.027 14.4 0.6 0.044 13.7 0.6 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Thr_dehydrat_C PF00585.18 gi|300712716|ref|YP_003738529.1| - 0.076 12.8 0.0 0.099 12.4 0.0 1.3 1 0 0 1 1 1 0 C-terminal regulatory domain of Threonine dehydratase CorA PF01544.18 gi|300712716|ref|YP_003738529.1| - 0.1 11.9 0.2 0.11 11.8 0.2 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Rad51 PF08423.11 gi|300712717|ref|YP_003738530.1| - 7.3e-07 28.7 0.0 9.6e-07 28.3 0.0 1.1 1 0 0 1 1 1 1 Rad51 Cdc6_C PF09079.11 gi|300712718|ref|YP_003738531.1| - 2.1e-05 24.4 1.4 0.00061 19.7 0.2 2.8 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA_assoc_2 PF16193.5 gi|300712718|ref|YP_003738531.1| - 7e-05 23.1 1.3 0.00016 22.0 0.4 2.1 2 0 0 2 2 2 1 AAA C-terminal domain TusA PF01206.17 gi|300712718|ref|YP_003738531.1| - 0.021 14.6 0.0 0.32 10.9 0.0 2.6 2 1 0 2 2 2 0 Sulfurtransferase TusA AAA_22 PF13401.6 gi|300712718|ref|YP_003738531.1| - 0.022 15.1 0.9 0.94 9.8 0.2 2.4 2 0 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|300712718|ref|YP_003738531.1| - 0.039 13.8 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein Zincin_2 PF10103.9 gi|300712720|ref|YP_003738533.1| - 0.05 12.9 0.0 0.052 12.8 0.0 1.1 1 0 0 1 1 1 0 Zincin-like metallopeptidase Bgal_small_N PF02929.17 gi|300712721|ref|YP_003738534.1| - 1.3e-56 191.9 1.5 1e-44 153.0 0.1 2.7 3 0 0 3 3 3 2 Beta galactosidase small chain Glyco_hydro_2_C PF02836.17 gi|300712721|ref|YP_003738534.1| - 4e-53 180.5 1.5 6.4e-43 147.0 1.4 2.9 2 1 0 2 2 2 2 Glycosyl hydrolases family 2, TIM barrel domain Laminin_G_3 PF13385.6 gi|300712721|ref|YP_003738534.1| - 8e-28 97.5 2.5 1.1e-15 58.1 0.1 2.8 2 0 0 2 2 2 2 Concanavalin A-like lectin/glucanases superfamily DUF4981 PF16353.5 gi|300712721|ref|YP_003738534.1| - 9.2e-28 96.6 0.1 4.3e-27 94.4 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function(DUF4981) Glyco_hydro_2 PF00703.21 gi|300712721|ref|YP_003738534.1| - 0.0019 18.9 0.0 0.0059 17.3 0.0 2.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Bac_rhamnosid_C PF17390.2 gi|300712721|ref|YP_003738534.1| - 0.055 13.3 0.1 2.7 7.8 0.0 2.5 2 0 0 2 2 2 0 Bacterial alpha-L-rhamnosidase C-terminal domain OrfB_IS605 PF01385.19 gi|300712724|ref|YP_003738537.1| - 2.5e-23 82.6 0.1 5.1e-23 81.6 0.1 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|300712724|ref|YP_003738537.1| - 5.5e-21 74.3 1.6 5.5e-21 74.3 1.6 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|300712724|ref|YP_003738537.1| - 5.7e-09 35.3 0.5 1.1e-08 34.5 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|300712724|ref|YP_003738537.1| - 0.47 10.5 4.3 1 9.4 4.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L37e PF01907.19 gi|300712724|ref|YP_003738537.1| - 8 6.7 11.6 1.8 8.8 3.8 3.0 2 1 0 2 2 2 0 Ribosomal protein L37e GATA PF00320.27 gi|300712724|ref|YP_003738537.1| - 9.7 5.9 7.3 0.6 9.8 1.7 1.9 2 0 0 2 2 2 0 GATA zinc finger Y1_Tnp PF01797.16 gi|300712725|ref|YP_003738538.1| - 3.6e-36 123.9 0.0 4.1e-36 123.7 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like IQ_SEC7_PH PF16453.5 gi|300712725|ref|YP_003738538.1| - 0.01 15.8 0.0 0.015 15.3 0.0 1.4 1 1 0 1 1 1 0 PH domain Glyco_hydro_66 PF13199.6 gi|300712725|ref|YP_003738538.1| - 0.092 11.4 0.0 0.092 11.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 66 DUF4576 PF15144.6 gi|300712726|ref|YP_003738539.1| - 0.064 13.1 0.1 0.081 12.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4576) HTH_34 PF13601.6 gi|300712728|ref|YP_003738541.1| - 0.0058 16.8 0.0 0.013 15.7 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|300712728|ref|YP_003738541.1| - 0.038 14.0 0.0 0.043 13.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Rio2_N PF09202.11 gi|300712728|ref|YP_003738541.1| - 0.057 13.6 0.0 0.088 13.0 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_20 PF12840.7 gi|300712728|ref|YP_003738541.1| - 0.079 13.0 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain SbcCD_C PF13558.6 gi|300712730|ref|YP_003738543.1| - 0.0013 19.0 0.0 0.0023 18.1 0.0 1.5 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit GCN5L1 PF06320.13 gi|300712730|ref|YP_003738543.1| - 0.0014 18.8 1.0 0.0026 17.9 1.0 1.5 1 0 0 1 1 1 1 GCN5-like protein 1 (GCN5L1) DUF3450 PF11932.8 gi|300712730|ref|YP_003738543.1| - 0.021 14.2 6.8 0.12 11.7 6.8 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) DUF1664 PF07889.12 gi|300712730|ref|YP_003738543.1| - 0.023 14.7 2.7 0.034 14.2 2.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Mod_r PF07200.13 gi|300712730|ref|YP_003738543.1| - 0.03 14.4 3.9 0.062 13.4 3.9 1.5 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein NPV_P10 PF05531.12 gi|300712730|ref|YP_003738543.1| - 0.048 14.1 0.5 0.18 12.3 0.5 2.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein THOC7 PF05615.13 gi|300712730|ref|YP_003738543.1| - 0.048 13.9 8.5 0.086 13.1 8.5 1.5 1 0 0 1 1 1 0 Tho complex subunit 7 SLX9 PF15341.6 gi|300712730|ref|YP_003738543.1| - 0.16 12.4 0.6 0.21 12.0 0.6 1.4 1 1 0 1 1 1 0 Ribosome biogenesis protein SLX9 XhlA PF10779.9 gi|300712730|ref|YP_003738543.1| - 0.19 12.0 8.1 0.55 10.5 1.2 2.6 2 0 0 2 2 2 0 Haemolysin XhlA 5_nucleotid PF05761.14 gi|300712730|ref|YP_003738543.1| - 0.24 10.3 1.2 0.34 9.8 1.2 1.2 1 0 0 1 1 1 0 5' nucleotidase family DUF16 PF01519.16 gi|300712730|ref|YP_003738543.1| - 0.48 10.9 3.2 1.5 9.4 2.7 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF16 TMCO5 PF14992.6 gi|300712730|ref|YP_003738543.1| - 0.56 9.7 6.0 0.17 11.5 3.3 1.5 2 0 0 2 2 2 0 TMCO5 family Atg14 PF10186.9 gi|300712730|ref|YP_003738543.1| - 0.62 9.1 3.3 0.81 8.7 3.3 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 HTH_AsnC-type PF13404.6 gi|300712732|ref|YP_003738545.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TRAM PF01938.20 gi|300712733|ref|YP_003738546.1| - 3.8e-12 46.0 1.9 4.3e-12 45.8 1.9 1.1 1 0 0 1 1 1 1 TRAM domain ADP_ribosyl_GH PF03747.14 gi|300712734|ref|YP_003738547.1| - 3.4e-44 151.8 0.3 4.1e-44 151.5 0.3 1.1 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Gly-zipper_Omp PF13488.6 gi|300712734|ref|YP_003738547.1| - 0.0026 17.7 3.3 0.57 10.2 0.1 2.5 2 0 0 2 2 2 2 Glycine zipper Gly-zipper_OmpA PF13436.6 gi|300712734|ref|YP_003738547.1| - 0.0045 16.7 2.4 0.13 12.1 0.2 2.3 2 0 0 2 2 2 2 Glycine-zipper domain Gly-zipper_YMGG PF13441.6 gi|300712734|ref|YP_003738547.1| - 0.0063 16.2 2.5 2.2 8.1 0.1 2.3 2 0 0 2 2 2 2 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 gi|300712734|ref|YP_003738547.1| - 0.034 14.0 5.4 1.2 9.1 1.2 2.4 2 0 0 2 2 2 0 Glycine zipper 2TM domain IclR PF01614.18 gi|300712735|ref|YP_003738548.1| - 1.8e-25 89.3 0.0 4.3e-25 88.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|300712735|ref|YP_003738548.1| - 1.1e-12 47.6 0.0 7.4e-12 44.9 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|300712735|ref|YP_003738548.1| - 3.4e-07 29.7 0.0 9.4e-07 28.3 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|300712735|ref|YP_003738548.1| - 9.2e-07 28.8 0.0 2.2e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|300712735|ref|YP_003738548.1| - 1.4e-05 24.9 0.0 4.3e-05 23.3 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_5 PF01022.20 gi|300712735|ref|YP_003738548.1| - 1.8e-05 24.5 0.0 4e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|300712735|ref|YP_003738548.1| - 0.00019 21.3 0.1 0.00049 20.0 0.0 1.8 2 0 0 2 2 1 1 HTH domain MarR PF01047.22 gi|300712735|ref|YP_003738548.1| - 0.00023 21.0 0.0 0.00059 19.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|300712735|ref|YP_003738548.1| - 0.0025 17.6 0.1 0.0075 16.1 0.0 1.9 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 gi|300712735|ref|YP_003738548.1| - 0.0043 17.1 0.0 0.032 14.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|300712735|ref|YP_003738548.1| - 0.0062 16.3 0.0 0.024 14.4 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|300712735|ref|YP_003738548.1| - 0.0063 16.3 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_23 PF13384.6 gi|300712735|ref|YP_003738548.1| - 0.0063 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 gi|300712735|ref|YP_003738548.1| - 0.028 14.3 0.0 0.058 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|300712735|ref|YP_003738548.1| - 0.044 13.4 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|300712735|ref|YP_003738548.1| - 0.078 13.5 0.0 0.19 12.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain CENP-B_N PF04218.13 gi|300712735|ref|YP_003738548.1| - 0.11 12.1 0.1 2.4 7.8 0.0 2.7 2 1 1 3 3 3 0 CENP-B N-terminal DNA-binding domain FaeA PF04703.12 gi|300712735|ref|YP_003738548.1| - 0.11 12.8 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein HTH_38 PF13936.6 gi|300712735|ref|YP_003738548.1| - 0.13 12.0 0.1 0.29 10.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|300712735|ref|YP_003738548.1| - 0.15 12.4 0.0 0.35 11.2 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Mga PF05043.13 gi|300712735|ref|YP_003738548.1| - 0.19 12.3 0.0 0.39 11.3 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain MR_MLE_C PF13378.6 gi|300712736|ref|YP_003738549.1| - 2e-41 141.9 0.0 2.9e-41 141.4 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|300712736|ref|YP_003738549.1| - 3.1e-16 59.6 0.0 5.8e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE_C PF13378.6 gi|300712737|ref|YP_003738550.1| - 1.1e-44 152.7 0.0 1.4e-44 152.3 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|300712737|ref|YP_003738550.1| - 6.9e-10 39.2 0.0 1.2e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TctC PF03401.14 gi|300712738|ref|YP_003738551.1| - 4.4e-09 35.8 0.0 5.2e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor SBP_bac_3 PF00497.20 gi|300712738|ref|YP_003738551.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 TctA PF01970.16 gi|300712739|ref|YP_003738552.1| - 9e-127 423.2 42.1 1.2e-126 422.8 42.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family TctB PF07331.11 gi|300712740|ref|YP_003738553.1| - 4e-16 59.5 14.2 5.2e-16 59.1 14.2 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family DUF4239 PF14023.6 gi|300712740|ref|YP_003738553.1| - 0.15 11.7 2.6 0.25 11.0 2.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) DUF1129 PF06570.11 gi|300712740|ref|YP_003738553.1| - 0.45 10.0 0.1 0.45 10.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) DUF1189 PF06691.11 gi|300712740|ref|YP_003738553.1| - 0.63 9.6 7.6 0.59 9.7 6.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1189) Lactamase_B PF00753.27 gi|300712741|ref|YP_003738554.1| - 9.5e-06 25.7 3.0 1.3e-05 25.3 3.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DNTTIP1_dimer PF18192.1 gi|300712741|ref|YP_003738554.1| - 0.03 14.7 0.1 0.098 13.0 0.1 1.7 1 1 0 1 1 1 0 DNTTIP1 dimerisation domain Lactamase_B PF00753.27 gi|300712742|ref|YP_003738555.1| - 1.2e-10 41.7 3.8 2.1e-10 41.0 3.8 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|300712742|ref|YP_003738555.1| - 0.032 13.7 0.1 0.066 12.7 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|300712742|ref|YP_003738555.1| - 0.065 12.7 0.0 0.14 11.6 0.0 1.5 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain Usp PF00582.26 gi|300712743|ref|YP_003738556.1| - 1.5e-20 74.1 0.7 1.8e-20 73.9 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DHDPS PF00701.22 gi|300712744|ref|YP_003738557.1| - 6.4e-55 185.9 0.0 7.3e-55 185.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family FCD PF07729.12 gi|300712745|ref|YP_003738558.1| - 0.0085 16.5 0.2 0.013 15.9 0.2 1.3 1 0 0 1 1 1 1 FCD domain DUF4932 PF16286.5 gi|300712745|ref|YP_003738558.1| - 0.059 12.6 0.0 0.075 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4932) Mx_ML PF17536.2 gi|300712747|ref|YP_003738560.1| - 0.019 14.7 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Matrix and Matrix long proteins N-terminal Mistic PF11458.8 gi|300712747|ref|YP_003738560.1| - 0.07 13.1 0.2 0.17 11.9 0.2 1.7 1 1 0 1 1 1 0 Membrane-integrating protein Mistic HTH_10 PF04967.12 gi|300712748|ref|YP_003738561.1| - 6e-18 64.4 0.0 7.7e-18 64.0 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|300712748|ref|YP_003738561.1| - 0.00045 20.0 0.1 0.00074 19.4 0.1 1.6 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|300712748|ref|YP_003738561.1| - 0.00054 19.5 0.0 0.00097 18.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|300712748|ref|YP_003738561.1| - 0.00094 19.2 0.0 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|300712748|ref|YP_003738561.1| - 0.0011 18.8 0.1 0.002 17.9 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain UPF0122 PF04297.14 gi|300712748|ref|YP_003738561.1| - 0.004 17.4 0.0 0.0058 16.8 0.0 1.2 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.22 gi|300712748|ref|YP_003738561.1| - 0.011 15.6 0.1 0.065 13.2 0.1 2.2 1 1 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|300712748|ref|YP_003738561.1| - 0.011 15.7 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.16 gi|300712748|ref|YP_003738561.1| - 0.013 15.2 0.0 0.048 13.4 0.0 1.9 1 1 1 2 2 2 0 helix-turn-helix, Psq domain Phage_CI_repr PF07022.13 gi|300712748|ref|YP_003738561.1| - 0.016 15.3 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_11 PF08279.12 gi|300712748|ref|YP_003738561.1| - 0.022 14.7 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|300712748|ref|YP_003738561.1| - 0.033 14.0 0.0 0.058 13.2 0.0 1.5 1 1 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|300712748|ref|YP_003738561.1| - 0.034 13.7 0.0 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_30 PF13556.6 gi|300712748|ref|YP_003738561.1| - 0.053 13.3 0.0 0.08 12.8 0.0 1.2 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_50 PF18024.1 gi|300712748|ref|YP_003738561.1| - 0.08 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|300712748|ref|YP_003738561.1| - 0.082 12.7 0.1 0.74 9.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain IF2_N PF04760.15 gi|300712748|ref|YP_003738561.1| - 0.087 12.7 0.0 0.21 11.5 0.0 1.6 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region GYD PF08734.11 gi|300712751|ref|YP_003738564.1| - 3.5e-20 71.8 0.1 3.8e-20 71.6 0.1 1.0 1 0 0 1 1 1 1 GYD domain PadR PF03551.14 gi|300712752|ref|YP_003738565.1| - 2.7e-15 56.1 0.6 3.3e-15 55.8 0.6 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|300712752|ref|YP_003738565.1| - 0.00088 19.7 0.0 0.0011 19.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|300712752|ref|YP_003738565.1| - 0.0014 18.4 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|300712752|ref|YP_003738565.1| - 0.0027 17.7 0.1 0.0034 17.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|300712752|ref|YP_003738565.1| - 0.053 13.4 0.0 0.078 12.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1016_N PF17761.1 gi|300712753|ref|YP_003738566.1| - 0.056 13.6 0.0 0.068 13.3 0.0 1.2 1 0 0 1 1 1 0 DUF1016 N-terminal domain TRAM PF01938.20 gi|300712754|ref|YP_003738567.1| - 2.1e-11 43.6 0.1 2.3e-11 43.5 0.1 1.0 1 0 0 1 1 1 1 TRAM domain Seryl_tRNA_N PF02403.22 gi|300712756|ref|YP_003738569.1| - 1.8e-05 24.9 59.8 0.00079 19.6 4.8 5.1 3 2 2 5 5 5 2 Seryl-tRNA synthetase N-terminal domain DUF3584 PF12128.8 gi|300712756|ref|YP_003738569.1| - 5e-05 21.1 51.0 0.0067 14.0 19.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) AAA_23 PF13476.6 gi|300712756|ref|YP_003738569.1| - 8e-05 23.2 23.6 8e-05 23.2 23.6 4.8 1 1 2 3 3 2 1 AAA domain Spc7 PF08317.11 gi|300712756|ref|YP_003738569.1| - 0.00036 19.5 73.6 0.041 12.8 19.1 4.5 2 2 2 4 4 4 3 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|300712756|ref|YP_003738569.1| - 0.00056 19.9 15.3 0.00056 19.9 15.3 5.0 2 2 1 4 4 4 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_15 PF13175.6 gi|300712756|ref|YP_003738569.1| - 0.0042 16.9 20.9 0.014 15.1 5.8 3.1 2 1 0 2 2 2 1 AAA ATPase domain APG6_N PF17675.1 gi|300712756|ref|YP_003738569.1| - 0.0058 17.2 12.1 0.0058 17.2 12.1 5.8 1 1 4 5 5 5 1 Apg6 coiled-coil region SbcCD_C PF13558.6 gi|300712756|ref|YP_003738569.1| - 0.0064 16.7 0.0 0.025 14.8 0.0 2.1 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit CCDC-167 PF15188.6 gi|300712756|ref|YP_003738569.1| - 0.0089 16.4 8.3 0.0089 16.4 8.3 6.1 2 2 1 4 4 3 1 Coiled-coil domain-containing protein 167 AAA_13 PF13166.6 gi|300712756|ref|YP_003738569.1| - 0.015 14.0 48.9 0.016 13.9 17.1 2.6 2 1 0 2 2 2 0 AAA domain OmpH PF03938.14 gi|300712756|ref|YP_003738569.1| - 0.016 15.6 60.1 0.035 14.4 9.7 4.5 3 1 1 4 4 4 0 Outer membrane protein (OmpH-like) PRKG1_interact PF15898.5 gi|300712756|ref|YP_003738569.1| - 0.03 15.2 14.7 0.03 15.2 14.7 5.3 2 2 4 6 6 6 0 cGMP-dependent protein kinase interacting domain DUF1664 PF07889.12 gi|300712756|ref|YP_003738569.1| - 0.092 12.8 40.5 0.094 12.8 5.8 5.7 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) Rogdi_lz PF10259.9 gi|300712756|ref|YP_003738569.1| - 0.14 11.6 8.4 0.022 14.2 1.9 2.7 2 1 0 2 2 2 0 Rogdi leucine zipper containing protein NPV_P10 PF05531.12 gi|300712756|ref|YP_003738569.1| - 0.16 12.4 32.8 0.16 12.4 0.5 6.5 4 2 1 6 6 6 0 Nucleopolyhedrovirus P10 protein DUF3450 PF11932.8 gi|300712756|ref|YP_003738569.1| - 0.43 9.8 68.7 1.2 8.4 12.0 5.2 3 2 1 5 5 5 0 Protein of unknown function (DUF3450) Fib_alpha PF08702.10 gi|300712756|ref|YP_003738569.1| - 0.83 9.8 43.0 2.8 8.1 6.2 5.0 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family FPP PF05911.11 gi|300712756|ref|YP_003738569.1| - 1.7 6.7 59.9 1.2 7.2 28.3 2.2 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil DUF4407 PF14362.6 gi|300712756|ref|YP_003738569.1| - 1.8 7.8 57.6 14 4.9 20.1 4.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) AIP3 PF03915.13 gi|300712756|ref|YP_003738569.1| - 4 6.4 46.0 1.4 7.9 20.7 2.9 1 1 2 3 3 3 0 Actin interacting protein 3 HIP1_clath_bdg PF16515.5 gi|300712756|ref|YP_003738569.1| - 4.2 8.0 65.2 6.9 7.4 8.7 5.0 3 1 0 4 4 4 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Flagellin_N PF00669.20 gi|300712756|ref|YP_003738569.1| - 5.4 7.1 31.7 1.9 8.6 0.9 4.4 3 1 1 4 4 4 0 Bacterial flagellin N-terminal helical region Lip_prot_lig_C PF10437.9 gi|300712756|ref|YP_003738569.1| - 6.6 6.8 10.3 12 6.0 0.4 4.1 3 1 0 3 3 3 0 Bacterial lipoate protein ligase C-terminus DUF4201 PF13870.6 gi|300712756|ref|YP_003738569.1| - 8.2 6.1 54.0 0.37 10.5 13.4 4.0 2 2 2 4 4 4 0 Domain of unknown function (DUF4201) DHR10 PF18595.1 gi|300712756|ref|YP_003738569.1| - 9.2 6.4 88.0 0.033 14.2 12.6 5.7 2 2 1 4 4 4 0 Designed helical repeat protein 10 domain Cdc6_C PF09079.11 gi|300712757|ref|YP_003738570.1| - 6.3e-19 67.7 0.1 1.9e-18 66.2 0.1 1.9 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|300712757|ref|YP_003738570.1| - 1.3e-10 41.6 0.0 3.6e-10 40.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|300712757|ref|YP_003738570.1| - 2.8e-09 37.6 0.1 1.2e-08 35.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|300712757|ref|YP_003738570.1| - 7.1e-06 26.5 0.0 5.1e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|300712757|ref|YP_003738570.1| - 9.3e-06 25.0 0.0 1.5e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_32 PF13654.6 gi|300712757|ref|YP_003738570.1| - 0.00055 18.9 0.6 0.29 9.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|300712757|ref|YP_003738570.1| - 0.00087 18.5 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TniB PF05621.11 gi|300712757|ref|YP_003738570.1| - 0.00099 18.6 0.0 0.0022 17.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|300712757|ref|YP_003738570.1| - 0.0032 17.4 0.1 0.0056 16.6 0.1 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|300712757|ref|YP_003738570.1| - 0.0044 16.5 0.0 0.0096 15.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region TrwB_AAD_bind PF10412.9 gi|300712757|ref|YP_003738570.1| - 0.0073 15.3 0.0 0.065 12.1 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.29 gi|300712757|ref|YP_003738570.1| - 0.012 15.4 0.0 2.4 7.9 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_2 PF07724.14 gi|300712757|ref|YP_003738570.1| - 0.014 15.6 0.0 0.027 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.26 gi|300712757|ref|YP_003738570.1| - 0.016 14.9 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|300712757|ref|YP_003738570.1| - 0.017 14.2 0.0 0.029 13.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|300712757|ref|YP_003738570.1| - 0.046 14.1 0.0 0.098 13.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|300712757|ref|YP_003738570.1| - 0.053 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|300712757|ref|YP_003738570.1| - 0.065 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain KAP_NTPase PF07693.14 gi|300712757|ref|YP_003738570.1| - 0.068 12.4 0.7 1.2 8.4 0.4 2.1 1 1 1 2 2 2 0 KAP family P-loop domain Microtub_bd PF16796.5 gi|300712757|ref|YP_003738570.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Microtubule binding PIF1 PF05970.14 gi|300712757|ref|YP_003738570.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase bMG6 PF17962.1 gi|300712758|ref|YP_003738571.1| - 0.021 15.0 1.4 0.034 14.3 0.2 1.8 2 0 0 2 2 2 0 Bacterial macroglobulin domain 6 PIN PF01850.21 gi|300712759|ref|YP_003738572.1| - 0.00027 21.5 0.0 0.0003 21.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain AAA_31 PF13614.6 gi|300712761|ref|YP_003738574.1| - 7.5e-21 74.8 0.0 1.1e-20 74.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|300712761|ref|YP_003738574.1| - 3.7e-10 40.0 0.0 4.6e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|300712761|ref|YP_003738574.1| - 6.7e-07 28.8 0.0 1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|300712761|ref|YP_003738574.1| - 4.9e-05 22.9 0.0 0.00011 21.7 0.0 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|300712761|ref|YP_003738574.1| - 0.00044 19.6 0.0 0.03 13.6 0.0 2.2 1 1 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|300712761|ref|YP_003738574.1| - 0.0052 16.3 0.0 0.0079 15.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|300712761|ref|YP_003738574.1| - 0.017 14.7 0.1 0.042 13.5 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|300712761|ref|YP_003738574.1| - 0.054 13.0 0.0 0.16 11.4 0.0 1.7 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AMP-binding PF00501.28 gi|300712763|ref|YP_003738576.1| - 4.5e-06 25.5 0.3 3.3e-05 22.7 0.3 2.0 1 1 0 1 1 1 1 AMP-binding enzyme RHH_1 PF01402.21 gi|300712764|ref|YP_003738577.1| - 2.4e-05 24.1 0.0 2.4e-05 24.1 0.0 2.4 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family Gp-FAR-1 PF05823.12 gi|300712764|ref|YP_003738577.1| - 0.0035 17.7 0.4 0.0041 17.5 0.4 1.1 1 0 0 1 1 1 1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) FAM184 PF15665.5 gi|300712764|ref|YP_003738577.1| - 0.0066 16.3 7.1 0.0075 16.1 7.1 1.1 1 0 0 1 1 1 1 Family with sequence similarity 184, A and B DASH_Spc34 PF08657.10 gi|300712764|ref|YP_003738577.1| - 0.062 13.1 7.8 0.08 12.7 7.8 1.1 1 0 0 1 1 1 0 DASH complex subunit Spc34 FAM91_C PF14648.6 gi|300712764|ref|YP_003738577.1| - 0.069 12.0 0.5 0.084 11.7 0.5 1.0 1 0 0 1 1 1 0 FAM91 C-terminus Tho2 PF11262.8 gi|300712764|ref|YP_003738577.1| - 0.088 12.0 1.9 0.097 11.9 1.9 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 UPF0242 PF06785.11 gi|300712764|ref|YP_003738577.1| - 0.22 11.6 6.3 0.31 11.1 6.3 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF4337 PF14235.6 gi|300712764|ref|YP_003738577.1| - 0.24 11.5 2.0 0.29 11.2 2.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) DUF4407 PF14362.6 gi|300712764|ref|YP_003738577.1| - 0.62 9.4 7.3 0.98 8.7 7.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Med21 PF11221.8 gi|300712764|ref|YP_003738577.1| - 4.5 7.5 8.7 2.4 8.4 6.0 1.8 1 1 1 2 2 2 0 Subunit 21 of Mediator complex DUF465 PF04325.13 gi|300712764|ref|YP_003738577.1| - 6.2 6.9 11.8 15 5.8 0.9 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF465) PMT_2 PF13231.6 gi|300712766|ref|YP_003738579.1| - 7.6e-06 26.2 12.9 7.6e-06 26.2 12.9 4.8 4 2 1 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase TMEM51 PF15345.6 gi|300712766|ref|YP_003738579.1| - 0.32 10.8 1.0 23 4.7 0.1 2.3 2 0 0 2 2 2 0 Transmembrane protein 51 Oleosin PF01277.17 gi|300712768|ref|YP_003738581.1| - 0.0031 17.3 0.8 0.0031 17.3 0.8 1.1 1 0 0 1 1 1 1 Oleosin # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014298.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014298.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014298.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014298.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:11:37 2019 # [ok]