# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|284161129|ref|YP_003399752.1| - 2.4e-26 91.2 1.6 1.1e-25 89.2 0.1 2.5 3 0 0 3 3 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|284161129|ref|YP_003399752.1| - 4.3e-13 49.5 0.1 1.8e-12 47.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284161129|ref|YP_003399752.1| - 1.9e-12 47.5 0.1 6.1e-11 42.6 0.0 2.4 1 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|284161129|ref|YP_003399752.1| - 1.5e-09 38.1 0.0 3.8e-09 36.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|284161129|ref|YP_003399752.1| - 1.4e-06 28.0 0.0 2.4e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 NACHT domain KAP_NTPase PF07693.9 gi|284161129|ref|YP_003399752.1| - 2.8e-06 26.5 0.5 0.0027 16.7 0.0 2.3 1 1 1 2 2 2 2 KAP family P-loop domain Arch_ATPase PF01637.13 gi|284161129|ref|YP_003399752.1| - 2.9e-06 27.1 0.6 5e-06 26.3 0.1 1.5 2 0 0 2 2 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|284161129|ref|YP_003399752.1| - 3.8e-05 22.6 0.0 5.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain DEAD PF00270.24 gi|284161129|ref|YP_003399752.1| - 4.6e-05 22.9 0.6 0.26 10.7 0.1 2.4 1 1 1 2 2 2 2 DEAD/DEAH box helicase DUF815 PF05673.8 gi|284161129|ref|YP_003399752.1| - 0.00019 20.4 0.0 0.00053 18.9 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RuvB_N PF05496.7 gi|284161129|ref|YP_003399752.1| - 0.00042 19.4 0.1 0.31 10.0 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|284161129|ref|YP_003399752.1| - 0.0029 17.0 0.0 0.012 15.0 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain T2SE PF00437.15 gi|284161129|ref|YP_003399752.1| - 0.0039 16.1 0.0 0.0071 15.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_2 PF07724.9 gi|284161129|ref|YP_003399752.1| - 0.0064 16.4 0.1 0.034 14.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF853 PF05872.7 gi|284161129|ref|YP_003399752.1| - 0.011 14.1 0.0 0.021 13.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_24 PF13479.1 gi|284161129|ref|YP_003399752.1| - 0.013 15.1 0.2 0.026 14.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_32 PF13654.1 gi|284161129|ref|YP_003399752.1| - 0.013 14.1 0.7 1.5 7.3 0.2 2.4 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|284161129|ref|YP_003399752.1| - 0.017 14.0 0.0 0.025 13.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|284161129|ref|YP_003399752.1| - 0.019 15.8 1.5 0.14 13.0 1.0 2.8 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|284161129|ref|YP_003399752.1| - 0.026 14.3 0.0 0.074 12.8 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.7 gi|284161129|ref|YP_003399752.1| - 0.029 13.4 0.2 2.1 7.4 0.0 2.6 3 0 0 3 3 3 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|284161129|ref|YP_003399752.1| - 0.032 13.6 0.0 0.31 10.4 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|284161129|ref|YP_003399752.1| - 0.042 13.6 0.5 0.23 11.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF87 Mg_chelatase_2 PF13335.1 gi|284161129|ref|YP_003399752.1| - 0.062 13.6 0.1 0.14 12.5 0.1 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|284161129|ref|YP_003399752.1| - 0.096 12.8 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|284161129|ref|YP_003399752.1| - 0.099 12.3 0.9 1.6 8.4 0.6 2.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|284161129|ref|YP_003399752.1| - 0.11 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Bac_DnaA PF00308.13 gi|284161129|ref|YP_003399752.1| - 0.15 11.6 1.3 1.4 8.4 0.9 2.2 1 1 0 1 1 1 0 Bacterial dnaA protein ABC_tran PF00005.22 gi|284161129|ref|YP_003399752.1| - 0.15 12.3 0.2 0.73 10.1 0.1 2.1 2 1 0 2 2 2 0 ABC transporter AAA_25 PF13481.1 gi|284161129|ref|YP_003399752.1| - 0.3 10.4 4.9 0.93 8.8 1.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|284161129|ref|YP_003399752.1| - 1.3 9.2 3.8 2.9 8.1 2.6 2.1 1 1 0 1 1 1 0 AAA domain FAA_hydrolase PF01557.13 gi|284161130|ref|YP_003399753.1| - 1.4e-66 224.0 0.0 1.7e-66 223.7 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family tRNA-synt_1 PF00133.17 gi|284161131|ref|YP_003399754.1| - 1.2e-144 482.5 2.0 7.9e-144 479.9 1.4 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|284161131|ref|YP_003399754.1| - 4.1e-43 146.7 0.5 1e-42 145.4 0.3 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|284161131|ref|YP_003399754.1| - 3.2e-27 95.1 0.3 3.8e-15 55.4 0.0 3.6 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|284161131|ref|YP_003399754.1| - 3.5e-07 29.6 0.0 0.00065 18.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|284161131|ref|YP_003399754.1| - 2.1e-05 23.8 0.0 7e-05 22.2 0.0 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|284161131|ref|YP_003399754.1| - 0.00022 20.0 0.2 0.12 10.9 0.0 2.8 2 1 0 2 2 2 2 tRNA synthetases class I (K) HypA PF01155.14 gi|284161131|ref|YP_003399754.1| - 0.005 16.5 0.3 0.94 9.1 0.0 3.3 3 0 0 3 3 3 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|284161131|ref|YP_003399754.1| - 0.0058 16.4 1.0 1.6 8.6 0.1 3.3 3 0 0 3 3 3 1 Double zinc ribbon tRNA-synt_1d PF00750.14 gi|284161131|ref|YP_003399754.1| - 0.011 14.6 0.0 0.32 9.7 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (R) Lar_restr_allev PF14354.1 gi|284161131|ref|YP_003399754.1| - 0.095 13.0 1.0 5.7 7.3 0.2 3.3 3 0 0 3 3 3 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|284161131|ref|YP_003399754.1| - 0.21 10.8 10.7 6.9 6.0 0.0 3.7 4 0 0 4 4 4 0 zinc-ribbon domain YhfH PF14149.1 gi|284161131|ref|YP_003399754.1| - 0.41 10.4 3.1 1.7 8.5 0.4 2.5 2 0 0 2 2 2 0 YhfH-like protein NOB1_Zn_bind PF08772.6 gi|284161131|ref|YP_003399754.1| - 0.64 9.8 2.4 3.9 7.3 0.1 2.9 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like DUF4451 PF14616.1 gi|284161131|ref|YP_003399754.1| - 0.72 9.6 4.0 1.7 8.4 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4451) Zn-ribbon_8 PF09723.5 gi|284161131|ref|YP_003399754.1| - 1.2 9.1 5.9 18 5.3 2.6 3.0 2 1 0 2 2 2 0 Zinc ribbon domain Beta-Casp PF10996.3 gi|284161132|ref|YP_003399755.1| - 1.6e-19 70.1 0.0 5e-19 68.4 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.7 gi|284161132|ref|YP_003399755.1| - 2.7e-13 49.4 2.0 2.6e-12 46.3 0.0 3.2 4 0 0 4 4 4 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|284161132|ref|YP_003399755.1| - 1.3e-12 47.7 0.1 2.3e-12 46.9 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284161132|ref|YP_003399755.1| - 4.4e-12 45.9 0.0 8.9e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284161132|ref|YP_003399755.1| - 0.088 12.5 0.0 0.29 10.8 0.0 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain PYC_OADA PF02436.13 gi|284161133|ref|YP_003399756.1| - 2.3e-65 219.6 0.6 1.6e-64 216.9 0.3 2.0 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|284161133|ref|YP_003399756.1| - 1.5e-40 139.3 0.0 2e-40 138.9 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Metallophos_2 PF12850.2 gi|284161134|ref|YP_003399757.1| - 8.7e-32 110.1 0.0 9.9e-32 109.9 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284161134|ref|YP_003399757.1| - 9.2e-09 34.9 0.5 5.2e-06 25.9 0.3 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PhoH PF02562.11 gi|284161135|ref|YP_003399758.1| - 1e-45 155.5 0.0 1.3e-45 155.1 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_5 PF13184.1 gi|284161135|ref|YP_003399758.1| - 1.1e-09 37.9 0.5 2.1e-08 33.8 0.0 2.9 3 0 0 3 3 3 1 NusA-like KH domain KH_2 PF07650.12 gi|284161135|ref|YP_003399758.1| - 2.9e-08 33.1 6.1 2e-07 30.4 0.9 2.9 2 1 1 3 3 3 1 KH domain KH_1 PF00013.24 gi|284161135|ref|YP_003399758.1| - 0.00013 21.5 1.7 0.00039 19.9 1.2 1.8 1 0 0 1 1 1 1 KH domain IstB_IS21 PF01695.12 gi|284161135|ref|YP_003399758.1| - 0.00098 18.5 0.0 0.0017 17.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein KH_3 PF13014.1 gi|284161135|ref|YP_003399758.1| - 0.0011 18.5 0.3 0.0032 17.0 0.2 1.8 1 0 0 1 1 1 1 KH domain AAA_14 PF13173.1 gi|284161135|ref|YP_003399758.1| - 0.0042 16.9 0.1 0.075 12.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|284161135|ref|YP_003399758.1| - 0.01 14.9 0.1 0.03 13.4 0.0 1.7 2 0 0 2 2 2 0 KaiC DEAD PF00270.24 gi|284161135|ref|YP_003399758.1| - 0.019 14.4 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase T2SE PF00437.15 gi|284161135|ref|YP_003399758.1| - 0.031 13.1 0.0 0.055 12.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein KH_4 PF13083.1 gi|284161135|ref|YP_003399758.1| - 0.032 13.8 0.1 0.08 12.5 0.0 1.7 1 0 0 1 1 1 0 KH domain AAA_22 PF13401.1 gi|284161135|ref|YP_003399758.1| - 0.043 13.9 0.3 0.33 11.0 0.2 2.1 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|284161135|ref|YP_003399758.1| - 0.045 13.2 0.0 7.8 5.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_30 PF13604.1 gi|284161135|ref|YP_003399758.1| - 0.094 12.2 0.0 0.3 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|284161135|ref|YP_003399758.1| - 0.12 12.2 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PIN PF01850.16 gi|284161137|ref|YP_003399760.1| - 7.6e-06 26.2 1.5 0.00017 21.9 1.0 2.3 1 1 0 1 1 1 1 PIN domain IRS PF02174.12 gi|284161137|ref|YP_003399760.1| - 0.089 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 PTB domain (IRS-1 type) ATPgrasp_Ter PF15632.1 gi|284161137|ref|YP_003399760.1| - 0.11 11.1 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon DUF836 PF05768.9 gi|284161137|ref|YP_003399760.1| - 0.21 11.8 2.8 1.2 9.4 0.0 2.5 2 1 1 3 3 3 0 Glutaredoxin-like domain (DUF836) NRDD PF13597.1 gi|284161138|ref|YP_003399761.1| - 1e-154 515.6 0.0 1.4e-154 515.2 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|284161138|ref|YP_003399761.1| - 1.2e-06 28.8 1.7 2.9e-06 27.6 0.4 2.3 2 0 0 2 2 2 1 ATP cone domain zf-ribbon_3 PF13248.1 gi|284161138|ref|YP_003399761.1| - 0.36 10.0 4.5 0.82 8.9 3.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Isochorismatase PF00857.15 gi|284161139|ref|YP_003399762.1| - 6.1e-50 169.5 0.1 6.7e-50 169.4 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family TctA PF01970.11 gi|284161140|ref|YP_003399763.1| - 0.011 14.2 1.0 0.01 14.2 0.7 1.0 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family DUF2061 PF09834.4 gi|284161140|ref|YP_003399763.1| - 0.015 15.4 1.4 0.027 14.6 1.0 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2061) Halogen_Hydrol PF10112.4 gi|284161140|ref|YP_003399763.1| - 0.049 13.0 0.9 0.049 13.0 0.6 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Lysis_S PF04971.7 gi|284161140|ref|YP_003399763.1| - 0.15 11.7 2.0 0.15 11.7 1.4 1.3 1 1 0 1 1 1 0 Lysis protein S DUF4149 PF13664.1 gi|284161141|ref|YP_003399764.1| - 0.034 14.1 0.9 0.049 13.7 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) Cation_efflux PF01545.16 gi|284161141|ref|YP_003399764.1| - 0.047 12.7 0.3 0.056 12.5 0.2 1.1 1 0 0 1 1 1 0 Cation efflux family DUF919 PF06034.6 gi|284161141|ref|YP_003399764.1| - 0.075 12.6 0.7 0.11 12.1 0.5 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) GPI2 PF06432.6 gi|284161141|ref|YP_003399764.1| - 0.078 12.3 0.1 0.078 12.3 0.1 1.0 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase TRP PF06011.7 gi|284161141|ref|YP_003399764.1| - 0.12 10.9 0.6 0.14 10.7 0.4 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel DUF2723 PF11028.3 gi|284161141|ref|YP_003399764.1| - 0.14 11.6 1.5 0.18 11.2 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) HTH_AsnC-type PF13404.1 gi|284161142|ref|YP_003399765.1| - 0.0083 15.6 0.0 0.023 14.2 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain DUF3793 PF12672.2 gi|284161142|ref|YP_003399765.1| - 0.019 14.5 0.0 0.066 12.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3793) SASP PF00269.15 gi|284161142|ref|YP_003399765.1| - 0.12 12.2 1.1 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type NAD_binding_7 PF13241.1 gi|284161143|ref|YP_003399766.1| - 7.1e-21 74.4 0.3 1.8e-20 73.0 0.1 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|284161143|ref|YP_003399766.1| - 4.3e-08 33.1 0.1 9.5e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.1 gi|284161143|ref|YP_003399766.1| - 7.9e-07 29.2 0.1 1.5e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|284161143|ref|YP_003399766.1| - 2.8e-06 26.2 0.1 5.7e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|284161143|ref|YP_003399766.1| - 1e-05 24.9 0.1 1.6e-05 24.2 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|284161143|ref|YP_003399766.1| - 1.9e-05 23.8 0.1 2.7e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|284161143|ref|YP_003399766.1| - 5e-05 23.6 0.3 0.00021 21.6 0.0 2.1 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|284161143|ref|YP_003399766.1| - 0.00019 20.6 0.0 0.00037 19.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|284161143|ref|YP_003399766.1| - 0.0018 18.3 0.6 0.011 15.7 0.4 2.2 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|284161143|ref|YP_003399766.1| - 0.0021 18.0 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Rossmann-like PF10727.4 gi|284161143|ref|YP_003399766.1| - 0.0042 16.8 0.0 0.14 11.8 0.0 2.3 2 1 0 2 2 2 1 Rossmann-like domain Epimerase PF01370.16 gi|284161143|ref|YP_003399766.1| - 0.0049 16.3 0.1 0.0084 15.5 0.0 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ThiF PF00899.16 gi|284161143|ref|YP_003399766.1| - 0.0068 16.2 2.7 1.7 8.4 0.6 2.5 1 1 1 2 2 2 2 ThiF family ApbA PF02558.11 gi|284161143|ref|YP_003399766.1| - 0.0093 15.4 0.0 0.029 13.8 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA PrkA PF06798.7 gi|284161143|ref|YP_003399766.1| - 0.016 14.5 0.1 0.025 13.8 0.1 1.4 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain Pyr_redox PF00070.22 gi|284161143|ref|YP_003399766.1| - 0.03 14.7 0.4 0.18 12.2 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|284161143|ref|YP_003399766.1| - 0.038 13.7 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF1987 PF09345.5 gi|284161143|ref|YP_003399766.1| - 0.043 13.6 0.1 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1987) AhpC-TSA PF00578.16 gi|284161143|ref|YP_003399766.1| - 0.087 12.5 0.2 0.32 10.6 0.0 2.0 2 0 0 2 2 2 0 AhpC/TSA family Oxidored_nitro PF00148.14 gi|284161143|ref|YP_003399766.1| - 0.089 11.4 0.0 0.14 10.7 0.0 1.4 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Methyltransf_25 PF13649.1 gi|284161143|ref|YP_003399766.1| - 0.096 13.0 0.0 0.61 10.4 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain ELFV_dehydrog PF00208.16 gi|284161143|ref|YP_003399766.1| - 0.12 11.9 0.8 0.23 11.0 0.4 1.6 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DAO PF01266.19 gi|284161143|ref|YP_003399766.1| - 0.42 9.4 1.3 3 6.6 0.3 2.4 2 1 1 3 3 3 0 FAD dependent oxidoreductase Thioredoxin PF00085.15 gi|284161144|ref|YP_003399767.1| - 2e-32 110.9 0.1 2.6e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|284161144|ref|YP_003399767.1| - 6.5e-12 45.6 0.0 4.1e-11 43.0 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|284161144|ref|YP_003399767.1| - 5.5e-08 32.8 0.0 9.1e-05 22.5 0.0 2.5 1 1 1 2 2 2 2 Thioredoxin-like Redoxin PF08534.5 gi|284161144|ref|YP_003399767.1| - 4e-06 26.4 0.1 1.9e-05 24.2 0.0 1.8 1 1 1 2 2 2 1 Redoxin HyaE PF07449.6 gi|284161144|ref|YP_003399767.1| - 2.4e-05 24.1 0.0 4.8e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_9 PF14595.1 gi|284161144|ref|YP_003399767.1| - 2.5e-05 23.8 0.1 3.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.16 gi|284161144|ref|YP_003399767.1| - 2.7e-05 23.8 0.1 0.0033 17.0 0.0 2.2 1 1 1 2 2 2 1 AhpC/TSA family Thioredoxin_6 PF13848.1 gi|284161144|ref|YP_003399767.1| - 4.3e-05 23.3 0.2 0.0021 17.8 0.0 2.3 1 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|284161144|ref|YP_003399767.1| - 0.00025 21.0 0.0 0.0004 20.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|284161144|ref|YP_003399767.1| - 0.0056 16.4 0.0 0.0092 15.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_5 PF13743.1 gi|284161144|ref|YP_003399767.1| - 0.042 13.4 0.0 0.22 11.0 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin CM2 PF03021.9 gi|284161144|ref|YP_003399767.1| - 0.076 12.5 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Influenza C virus M2 protein RNase_HII PF01351.13 gi|284161145|ref|YP_003399768.1| - 6e-53 179.4 0.0 6.8e-53 179.2 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Aminotran_5 PF00266.14 gi|284161145|ref|YP_003399768.1| - 0.11 11.1 0.0 0.22 10.2 0.0 1.4 1 1 0 1 1 1 0 Aminotransferase class-V QRPTase_C PF01729.14 gi|284161146|ref|YP_003399769.1| - 3.1e-38 130.9 0.0 4.2e-38 130.5 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase PF04095.11 gi|284161146|ref|YP_003399769.1| - 0.00041 19.7 0.1 0.002 17.4 0.1 2.0 1 1 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family QRPTase_N PF02749.11 gi|284161146|ref|YP_003399769.1| - 0.013 15.3 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain MazG PF03819.12 gi|284161147|ref|YP_003399770.1| - 2e-18 66.0 0.1 3e-18 65.5 0.1 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|284161147|ref|YP_003399770.1| - 3.7e-05 23.9 0.3 4.4e-05 23.6 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase dUTPase_2 PF08761.6 gi|284161147|ref|YP_003399770.1| - 0.12 12.4 0.2 0.18 11.8 0.1 1.4 1 1 0 1 1 1 0 dUTPase His_biosynth PF00977.16 gi|284161148|ref|YP_003399771.1| - 7.4e-90 300.2 0.2 8.5e-90 300.0 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|284161148|ref|YP_003399771.1| - 6.2e-07 28.5 0.0 5.5e-05 22.1 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|284161148|ref|YP_003399771.1| - 6.7e-06 25.3 0.5 0.078 12.0 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|284161148|ref|YP_003399771.1| - 0.00014 21.0 0.1 0.44 9.6 0.0 2.4 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|284161148|ref|YP_003399771.1| - 0.00014 21.1 0.3 0.21 10.7 0.0 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.16 gi|284161148|ref|YP_003399771.1| - 0.011 14.7 0.1 0.36 9.7 0.0 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|284161148|ref|YP_003399771.1| - 0.056 12.6 0.2 0.056 12.6 0.1 2.2 2 2 2 4 4 4 0 PcrB family G3P_antiterm PF04309.7 gi|284161148|ref|YP_003399771.1| - 0.097 11.7 0.2 0.32 10.0 0.0 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator HTH_20 PF12840.2 gi|284161149|ref|YP_003399772.1| - 0.0024 17.6 0.0 0.0052 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|284161149|ref|YP_003399772.1| - 0.0029 17.9 0.1 0.019 15.2 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain T2SF PF00482.18 gi|284161149|ref|YP_003399772.1| - 0.077 12.9 0.2 3.9 7.3 0.1 2.5 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F RNase_P_p30 PF01876.11 gi|284161150|ref|YP_003399773.1| - 4.9e-21 74.5 0.0 5.8e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 DUF2635 PF10948.3 gi|284161150|ref|YP_003399773.1| - 0.032 13.5 0.1 0.065 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2635) RNA_binding PF01877.12 gi|284161151|ref|YP_003399774.1| - 7e-32 109.9 1.5 7.5e-32 109.8 0.3 1.5 2 0 0 2 2 2 1 RNA binding DUF2795 PF11387.3 gi|284161151|ref|YP_003399774.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) 5TM-5TMR_LYT PF07694.7 gi|284161152|ref|YP_003399775.1| - 0.009 15.3 1.2 0.009 15.3 0.8 1.9 2 1 0 2 2 2 1 5TMR of 5TMR-LYT Form_Nir_trans PF01226.12 gi|284161152|ref|YP_003399775.1| - 0.062 12.1 7.3 0.3 9.9 0.6 2.1 1 1 1 2 2 2 0 Formate/nitrite transporter Peptidase_M50 PF02163.17 gi|284161152|ref|YP_003399775.1| - 0.81 8.6 7.4 15 4.4 5.1 2.3 1 1 0 1 1 1 0 Peptidase family M50 MazG PF03819.12 gi|284161153|ref|YP_003399776.1| - 2.5e-16 59.3 0.3 2.5e-16 59.3 0.2 1.7 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|284161153|ref|YP_003399776.1| - 7.3e-05 22.9 0.8 8.9e-05 22.6 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase TrkA_N PF02254.13 gi|284161154|ref|YP_003399777.1| - 2.7e-27 95.0 2.3 5.8e-27 94.0 1.0 2.1 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.15 gi|284161154|ref|YP_003399777.1| - 1.3e-19 70.2 2.1 6.7e-17 61.4 0.2 2.4 1 1 1 2 2 2 2 DHH family DHHA1 PF02272.14 gi|284161154|ref|YP_003399777.1| - 7.7e-11 41.5 0.9 7.7e-11 41.5 0.6 2.2 3 0 0 3 3 3 1 DHHA1 domain NAD_binding_10 PF13460.1 gi|284161154|ref|YP_003399777.1| - 1.1e-05 25.5 0.4 1.9e-05 24.7 0.3 1.4 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|284161154|ref|YP_003399777.1| - 2e-05 24.5 0.1 3.5e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|284161154|ref|YP_003399777.1| - 8.3e-05 22.7 2.1 0.00023 21.3 0.8 2.2 1 1 1 2 2 2 1 Putative NAD(P)-binding Methyltransf_11 PF08241.7 gi|284161154|ref|YP_003399777.1| - 0.0017 18.8 0.0 0.0069 16.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain F420_oxidored PF03807.12 gi|284161154|ref|YP_003399777.1| - 0.0035 17.7 0.7 0.023 15.1 0.1 2.5 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Methyltransf_18 PF12847.2 gi|284161154|ref|YP_003399777.1| - 0.0059 17.1 0.0 0.014 15.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284161154|ref|YP_003399777.1| - 0.0073 15.9 0.1 0.015 14.8 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTD PF01993.13 gi|284161154|ref|YP_003399777.1| - 0.0092 15.0 0.6 0.018 14.1 0.4 1.5 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase 3HCDH_N PF02737.13 gi|284161154|ref|YP_003399777.1| - 0.019 14.6 1.3 0.075 12.6 0.1 2.5 2 1 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|284161154|ref|YP_003399777.1| - 0.024 14.4 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|284161154|ref|YP_003399777.1| - 0.028 13.6 2.1 3 7.0 0.2 2.4 1 1 1 2 2 2 0 NmrA-like family ADH_zinc_N PF00107.21 gi|284161154|ref|YP_003399777.1| - 0.03 13.8 1.3 4.3 6.8 0.2 2.5 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Formyl_trans_N PF00551.14 gi|284161154|ref|YP_003399777.1| - 0.041 13.4 0.2 0.085 12.4 0.1 1.4 1 0 0 1 1 1 0 Formyl transferase UDPG_MGDP_dh_N PF03721.9 gi|284161154|ref|YP_003399777.1| - 0.051 12.9 0.7 0.19 11.1 0.4 2.0 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|284161154|ref|YP_003399777.1| - 0.052 12.5 0.2 0.099 11.6 0.1 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase ApbA PF02558.11 gi|284161154|ref|YP_003399777.1| - 0.061 12.7 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|284161154|ref|YP_003399777.1| - 0.096 12.4 0.1 0.99 9.1 0.0 2.2 1 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|284161154|ref|YP_003399777.1| - 0.097 11.8 0.2 0.26 10.4 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UPF0146 PF03686.8 gi|284161154|ref|YP_003399777.1| - 0.15 11.9 3.5 0.34 10.7 0.8 2.6 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0146) HAUS5 PF14817.1 gi|284161155|ref|YP_003399778.1| - 0.011 14.2 1.3 0.012 14.1 0.9 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 DUF4099 PF13351.1 gi|284161155|ref|YP_003399778.1| - 0.2 11.5 3.8 0.2 11.6 2.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4099) Seryl_tRNA_N PF02403.17 gi|284161155|ref|YP_003399778.1| - 0.74 9.8 5.8 0.9 9.5 4.0 1.1 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain ThiS PF02597.15 gi|284161156|ref|YP_003399779.1| - 2.4e-05 24.6 0.3 2.7e-05 24.5 0.2 1.1 1 0 0 1 1 1 1 ThiS family PhdYeFM_antitox PF02604.14 gi|284161156|ref|YP_003399779.1| - 0.043 13.3 0.1 0.09 12.3 0.0 1.6 1 1 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Lambda_tail_I PF06805.7 gi|284161156|ref|YP_003399779.1| - 0.055 13.3 0.1 0.056 13.2 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I PKD PF00801.15 gi|284161157|ref|YP_003399780.1| - 7.3e-17 60.8 7.0 7.3e-17 60.8 4.9 3.4 4 1 0 4 4 4 1 PKD domain Big_1 PF02369.11 gi|284161157|ref|YP_003399780.1| - 1.2e-15 57.2 11.3 6.9e-08 32.3 0.4 4.7 4 0 0 4 4 4 3 Bacterial Ig-like domain (group 1) Big_2 PF02368.13 gi|284161157|ref|YP_003399780.1| - 5.6 6.9 19.7 0.48 10.3 0.3 4.1 4 1 0 4 4 4 0 Bacterial Ig-like domain (group 2) eRF1_1 PF03463.10 gi|284161158|ref|YP_003399781.1| - 3.7e-31 107.4 2.5 6.2e-31 106.6 1.7 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|284161158|ref|YP_003399781.1| - 4.7e-23 81.6 3.2 5e-23 81.5 0.2 2.3 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|284161158|ref|YP_003399781.1| - 2.4e-16 60.2 0.0 4.3e-16 59.4 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 Radical_SAM PF04055.16 gi|284161158|ref|YP_003399781.1| - 0.0015 18.7 1.8 0.01 16.0 0.2 2.2 2 0 0 2 2 2 1 Radical SAM superfamily DUF1133 PF06576.6 gi|284161158|ref|YP_003399781.1| - 0.034 13.3 0.0 0.22 10.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1133) PCMT PF01135.14 gi|284161159|ref|YP_003399782.1| - 5.6e-81 271.0 0.0 6.6e-81 270.8 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|284161159|ref|YP_003399782.1| - 3.3e-13 49.4 0.0 4.3e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284161159|ref|YP_003399782.1| - 1.9e-10 41.3 0.0 3.2e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284161159|ref|YP_003399782.1| - 4e-07 29.3 0.0 5.6e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|284161159|ref|YP_003399782.1| - 5.1e-07 28.9 0.0 1.3e-06 27.6 0.0 1.6 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|284161159|ref|YP_003399782.1| - 9.9e-07 28.8 0.0 2.9e-06 27.3 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|284161159|ref|YP_003399782.1| - 1.1e-05 24.6 0.1 1.7e-05 23.9 0.0 1.4 2 0 0 2 2 2 1 O-methyltransferase Fibrillarin PF01269.12 gi|284161159|ref|YP_003399782.1| - 2.6e-05 23.2 0.1 5.2e-05 22.2 0.0 1.5 2 0 0 2 2 2 1 Fibrillarin Methyltransf_4 PF02390.12 gi|284161159|ref|YP_003399782.1| - 0.0026 16.8 0.0 0.0038 16.3 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.9 gi|284161159|ref|YP_003399782.1| - 0.0035 16.7 0.0 0.0067 15.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain GCD14 PF08704.5 gi|284161159|ref|YP_003399782.1| - 0.0042 16.6 0.0 0.0053 16.2 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_2 PF00891.13 gi|284161159|ref|YP_003399782.1| - 0.0053 15.9 0.0 0.0076 15.4 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|284161159|ref|YP_003399782.1| - 0.01 14.9 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|284161159|ref|YP_003399782.1| - 0.011 16.1 0.0 0.039 14.4 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284161159|ref|YP_003399782.1| - 0.012 15.3 0.0 0.019 14.7 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284161159|ref|YP_003399782.1| - 0.012 15.9 0.0 0.019 15.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|284161159|ref|YP_003399782.1| - 0.018 14.6 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|284161159|ref|YP_003399782.1| - 0.025 14.1 0.0 0.034 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) ADH_zinc_N PF00107.21 gi|284161159|ref|YP_003399782.1| - 0.025 14.1 0.0 0.063 12.8 0.0 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_9 PF08003.6 gi|284161159|ref|YP_003399782.1| - 0.084 11.5 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Met_10 PF02475.11 gi|284161159|ref|YP_003399782.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein GHMP_kinases_N PF00288.21 gi|284161160|ref|YP_003399783.1| - 1.3e-12 47.5 1.8 1.3e-12 47.5 1.2 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain UPF0233 PF06781.7 gi|284161161|ref|YP_003399784.1| - 0.092 12.3 1.5 0.1 12.2 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) VKOR PF07884.9 gi|284161161|ref|YP_003399784.1| - 0.3 10.9 12.3 0.15 11.9 3.2 2.3 1 1 1 2 2 2 0 Vitamin K epoxide reductase family TRAM_LAG1_CLN8 PF03798.11 gi|284161161|ref|YP_003399784.1| - 0.46 9.9 4.5 0.52 9.8 3.1 1.1 1 0 0 1 1 1 0 TLC domain Thioredoxin PF00085.15 gi|284161162|ref|YP_003399785.1| - 5.1e-08 32.5 0.1 5.9e-08 32.3 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|284161162|ref|YP_003399785.1| - 3.1e-05 24.0 2.4 4.1e-05 23.6 1.7 1.2 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|284161162|ref|YP_003399785.1| - 8.2e-05 22.5 1.8 0.00014 21.7 1.2 1.4 1 0 0 1 1 1 1 Glutaredoxin Redoxin PF08534.5 gi|284161162|ref|YP_003399785.1| - 0.00013 21.5 0.2 0.00014 21.4 0.2 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|284161162|ref|YP_003399785.1| - 0.00015 21.9 4.2 0.00061 19.9 2.9 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|284161162|ref|YP_003399785.1| - 0.00037 20.1 3.9 0.0045 16.5 0.6 2.1 1 1 1 2 2 2 1 DSBA-like thioredoxin domain DUF953 PF06110.6 gi|284161162|ref|YP_003399785.1| - 0.00043 19.7 0.0 0.00056 19.3 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF953) Thioredoxin_3 PF13192.1 gi|284161162|ref|YP_003399785.1| - 0.00074 19.2 0.4 0.0012 18.5 0.3 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|284161162|ref|YP_003399785.1| - 0.00075 19.5 1.3 0.0016 18.5 0.2 1.8 1 1 1 2 2 2 1 Thioredoxin-like TraF PF13728.1 gi|284161162|ref|YP_003399785.1| - 0.025 14.0 0.1 0.031 13.7 0.1 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein DUF836 PF05768.9 gi|284161162|ref|YP_003399785.1| - 0.05 13.8 0.1 0.06 13.6 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|284161162|ref|YP_003399785.1| - 0.079 12.6 0.1 0.094 12.3 0.1 1.2 1 0 0 1 1 1 0 AhpC/TSA family Thioredoxin_5 PF13743.1 gi|284161162|ref|YP_003399785.1| - 0.2 11.2 1.3 0.27 10.8 0.6 1.4 1 1 0 1 1 1 0 Thioredoxin Lactamase_B_3 PF13483.1 gi|284161163|ref|YP_003399786.1| - 2.4e-30 105.3 0.1 3e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|284161163|ref|YP_003399786.1| - 1.1e-19 70.7 0.0 1.5e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284161163|ref|YP_003399786.1| - 2.3e-12 46.9 2.4 7.3e-12 45.3 1.7 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily CPSase_L_D2 PF02786.12 gi|284161164|ref|YP_003399787.1| - 1.9e-73 246.2 0.0 2.8e-73 245.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|284161164|ref|YP_003399787.1| - 2.9e-45 152.8 0.1 6.6e-45 151.7 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|284161164|ref|YP_003399787.1| - 2.6e-36 123.8 0.0 5.5e-36 122.8 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATPgrasp_Ter PF15632.1 gi|284161164|ref|YP_003399787.1| - 5.5e-17 61.5 0.0 1.9e-16 59.7 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|284161164|ref|YP_003399787.1| - 8.1e-16 58.2 0.0 2e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|284161164|ref|YP_003399787.1| - 1.4e-12 47.3 0.0 3.2e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|284161164|ref|YP_003399787.1| - 1.3e-06 28.0 0.0 3.6e-06 26.6 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|284161164|ref|YP_003399787.1| - 3.5e-06 26.4 0.0 7.1e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|284161164|ref|YP_003399787.1| - 5e-05 22.9 0.0 9.6e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.9 gi|284161164|ref|YP_003399787.1| - 0.00058 19.7 0.0 0.0015 18.4 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|284161164|ref|YP_003399787.1| - 0.0026 16.9 0.0 0.0052 16.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CoA_binding_2 PF13380.1 gi|284161164|ref|YP_003399787.1| - 0.083 13.0 0.0 2 8.6 0.0 2.9 1 1 1 2 2 2 0 CoA binding domain DUF3401 PF11881.3 gi|284161164|ref|YP_003399787.1| - 0.15 11.4 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3401) DUF387 PF04079.11 gi|284161165|ref|YP_003399788.1| - 4.7e-37 126.8 0.8 5.6e-37 126.5 0.5 1.1 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) TrmB PF01978.14 gi|284161165|ref|YP_003399788.1| - 0.00011 21.8 0.4 0.015 15.0 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284161165|ref|YP_003399788.1| - 0.0026 17.5 0.1 0.029 14.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|284161165|ref|YP_003399788.1| - 0.0055 16.3 0.5 2.9 7.6 0.0 2.9 3 0 0 3 3 3 2 MarR family DUF1495 PF07381.6 gi|284161165|ref|YP_003399788.1| - 0.0073 15.9 0.1 2.5 7.8 0.0 2.4 2 1 0 2 2 2 2 Winged helix DNA-binding domain (DUF1495) DUF2042 PF09743.4 gi|284161165|ref|YP_003399788.1| - 0.0099 15.2 0.6 0.21 10.8 0.1 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2042) HTH_27 PF13463.1 gi|284161165|ref|YP_003399788.1| - 0.019 15.2 1.7 0.032 14.5 0.4 2.0 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|284161165|ref|YP_003399788.1| - 0.021 14.2 0.2 0.12 11.7 0.1 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|284161165|ref|YP_003399788.1| - 0.037 13.9 1.0 0.18 11.7 0.1 2.2 1 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) ScpA_ScpB PF02616.9 gi|284161166|ref|YP_003399789.1| - 1.3e-33 116.5 10.5 2.5e-33 115.6 7.3 1.5 1 1 0 1 1 1 1 ScpA/B protein Rad21_Rec8 PF04824.11 gi|284161166|ref|YP_003399789.1| - 7e-05 21.9 0.0 0.00014 20.9 0.0 1.5 1 0 0 1 1 1 1 Conserved region of Rad21 / Rec8 like protein DUF2207 PF09972.4 gi|284161166|ref|YP_003399789.1| - 0.043 12.3 0.1 0.083 11.4 0.0 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) SMC_N PF02463.14 gi|284161167|ref|YP_003399790.1| - 3.6e-59 199.6 23.2 9.3e-59 198.3 16.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|284161167|ref|YP_003399790.1| - 3.7e-28 97.9 0.3 1.2e-27 96.2 0.2 2.0 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_13 PF13166.1 gi|284161167|ref|YP_003399790.1| - 1.7e-09 36.7 117.9 0.0066 14.9 18.3 6.6 3 2 3 6 6 6 6 AAA domain Reo_sigmaC PF04582.7 gi|284161167|ref|YP_003399790.1| - 7e-09 35.3 31.8 0.00028 20.1 1.6 5.0 3 2 2 6 6 6 3 Reovirus sigma C capsid protein AAA_23 PF13476.1 gi|284161167|ref|YP_003399790.1| - 4.3e-08 33.7 174.0 0.0001 22.7 51.2 8.9 3 2 1 4 4 2 2 AAA domain AAA_29 PF13555.1 gi|284161167|ref|YP_003399790.1| - 5.9e-08 32.1 0.0 1.1e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|284161167|ref|YP_003399790.1| - 8.7e-08 32.4 35.4 1.4e-06 28.5 6.6 5.7 2 2 2 4 4 2 2 AAA domain Laminin_II PF06009.7 gi|284161167|ref|YP_003399790.1| - 2.4e-06 27.3 89.5 4.8e-05 23.1 4.9 8.5 2 2 5 8 8 8 4 Laminin Domain II IncA PF04156.9 gi|284161167|ref|YP_003399790.1| - 4.7e-06 26.3 143.2 0.0012 18.4 16.5 9.0 2 2 6 8 8 8 3 IncA protein Spc7 PF08317.6 gi|284161167|ref|YP_003399790.1| - 5.9e-05 21.8 133.3 0.0011 17.7 9.9 6.8 3 2 4 7 7 7 4 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|284161167|ref|YP_003399790.1| - 9e-05 22.3 44.3 0.041 13.7 3.1 8.1 3 2 3 6 6 6 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3584 PF12128.3 gi|284161167|ref|YP_003399790.1| - 0.00013 19.5 38.5 0.00013 19.5 26.7 3.2 2 1 0 2 2 2 2 Protein of unknown function (DUF3584) HR1 PF02185.11 gi|284161167|ref|YP_003399790.1| - 0.00039 20.0 6.5 0.00039 20.0 4.5 11.9 7 2 3 11 11 10 1 Hr1 repeat DUF869 PF05911.6 gi|284161167|ref|YP_003399790.1| - 0.0017 16.6 22.2 0.0017 16.6 15.4 4.8 2 2 2 4 4 4 1 Plant protein of unknown function (DUF869) WXG100 PF06013.7 gi|284161167|ref|YP_003399790.1| - 0.0027 17.6 6.7 50 3.9 0.0 7.7 6 3 3 9 9 8 0 Proteins of 100 residues with WXG DUF4201 PF13870.1 gi|284161167|ref|YP_003399790.1| - 0.0027 17.1 14.4 0.0027 17.1 10.0 8.5 3 2 5 8 8 8 3 Domain of unknown function (DUF4201) ATG16 PF08614.6 gi|284161167|ref|YP_003399790.1| - 0.0045 16.8 17.9 0.0045 16.8 12.4 8.4 2 2 7 9 9 9 2 Autophagy protein 16 (ATG16) Seryl_tRNA_N PF02403.17 gi|284161167|ref|YP_003399790.1| - 0.011 15.7 13.5 0.011 15.7 9.3 10.0 2 2 8 10 10 10 0 Seryl-tRNA synthetase N-terminal domain Myosin_tail_1 PF01576.14 gi|284161167|ref|YP_003399790.1| - 0.012 13.3 145.1 0.054 11.2 30.8 3.7 2 2 1 3 3 3 0 Myosin tail DUF258 PF03193.11 gi|284161167|ref|YP_003399790.1| - 0.012 14.7 0.0 0.33 10.1 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Laminin_I PF06008.9 gi|284161167|ref|YP_003399790.1| - 0.21 10.8 84.0 0.21 10.8 12.0 6.5 2 2 1 5 5 5 0 Laminin Domain I AAA_25 PF13481.1 gi|284161167|ref|YP_003399790.1| - 0.93 8.8 4.5 1.5 8.1 0.0 3.7 4 1 0 4 4 4 0 AAA domain AAA_27 PF13514.1 gi|284161167|ref|YP_003399790.1| - 1.3 6.5 91.7 0.052 11.2 29.9 4.2 2 2 1 4 4 4 0 AAA domain AAA_15 PF13175.1 gi|284161167|ref|YP_003399790.1| - 2.4 7.1 118.1 0.0041 16.2 38.2 4.1 2 2 1 3 3 2 0 AAA ATPase domain APG6 PF04111.7 gi|284161167|ref|YP_003399790.1| - 2.7 6.9 128.1 0.11 11.5 15.2 8.0 2 2 6 8 8 7 0 Autophagy protein Apg6 DUF1722 PF08349.6 gi|284161168|ref|YP_003399791.1| - 5.4e-05 23.0 0.7 6.8e-05 22.7 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Baculo_PEP_C PF04513.7 gi|284161168|ref|YP_003399791.1| - 0.011 15.5 0.1 0.014 15.1 0.1 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus IFT46_B_C PF12317.3 gi|284161168|ref|YP_003399791.1| - 0.012 14.9 2.6 0.016 14.5 1.8 1.1 1 0 0 1 1 1 0 Intraflagellar transport complex B protein 46 C terminal APG6 PF04111.7 gi|284161168|ref|YP_003399791.1| - 0.022 13.8 17.4 0.027 13.5 12.1 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 NPV_P10 PF05531.7 gi|284161168|ref|YP_003399791.1| - 0.032 14.4 1.3 50 4.2 0.1 2.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein AA_synth PF06684.6 gi|284161168|ref|YP_003399791.1| - 0.033 13.5 0.2 0.042 13.1 0.2 1.2 1 0 0 1 1 1 0 Amino acid synthesis AAA_13 PF13166.1 gi|284161168|ref|YP_003399791.1| - 0.034 12.6 13.7 0.04 12.3 9.5 1.1 1 0 0 1 1 1 0 AAA domain DUF342 PF03961.8 gi|284161168|ref|YP_003399791.1| - 0.04 12.3 14.0 0.047 12.1 9.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) SATase_N PF06426.9 gi|284161168|ref|YP_003399791.1| - 0.064 13.5 0.2 0.092 13.0 0.1 1.2 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal LPP PF04728.8 gi|284161168|ref|YP_003399791.1| - 0.07 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Lipoprotein leucine-zipper MbeD_MobD PF04899.7 gi|284161168|ref|YP_003399791.1| - 0.075 12.9 0.4 0.26 11.2 0.3 1.8 1 1 0 1 1 1 0 MbeD/MobD like Reo_sigmaC PF04582.7 gi|284161168|ref|YP_003399791.1| - 0.078 12.1 0.5 0.086 12.0 0.3 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Fmp27_WPPW PF10359.4 gi|284161168|ref|YP_003399791.1| - 0.096 11.0 9.8 0.11 10.9 6.8 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Phlebovirus_NSM PF07246.6 gi|284161168|ref|YP_003399791.1| - 0.097 11.8 7.7 0.11 11.6 5.3 1.2 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Occludin_ELL PF07303.8 gi|284161168|ref|YP_003399791.1| - 0.15 12.7 9.0 0.039 14.6 4.2 1.5 2 0 0 2 2 1 0 Occludin homology domain Syntaxin-6_N PF09177.6 gi|284161168|ref|YP_003399791.1| - 0.19 12.1 11.2 0.2 12.0 3.8 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Fib_alpha PF08702.5 gi|284161168|ref|YP_003399791.1| - 0.2 11.8 8.0 0.72 9.9 1.8 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF883 PF05957.8 gi|284161168|ref|YP_003399791.1| - 0.2 12.0 3.7 0.29 11.5 2.6 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Ubiq_cyt_C_chap PF03981.7 gi|284161168|ref|YP_003399791.1| - 0.21 11.4 1.6 0.27 11.0 1.0 1.3 1 1 0 1 1 1 0 Ubiquinol-cytochrome C chaperone Spc7 PF08317.6 gi|284161168|ref|YP_003399791.1| - 0.22 10.1 16.3 0.29 9.7 11.3 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF1664 PF07889.7 gi|284161168|ref|YP_003399791.1| - 0.27 11.0 6.4 0.41 10.4 4.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Tim44 PF04280.10 gi|284161168|ref|YP_003399791.1| - 0.27 11.1 3.3 0.52 10.2 2.3 1.5 1 1 0 1 1 1 0 Tim44-like domain GAS PF13851.1 gi|284161168|ref|YP_003399791.1| - 0.28 10.3 18.3 0.45 9.6 12.7 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding tRNA-synt_His PF13393.1 gi|284161168|ref|YP_003399791.1| - 0.29 10.1 2.8 0.32 10.0 1.9 1.1 1 0 0 1 1 1 0 Histidyl-tRNA synthetase SlyX PF04102.7 gi|284161168|ref|YP_003399791.1| - 0.33 11.3 8.6 1.4 9.3 0.8 2.2 1 1 1 2 2 2 0 SlyX Bacillus_HBL PF05791.6 gi|284161168|ref|YP_003399791.1| - 0.58 9.4 6.6 0.49 9.7 1.3 1.6 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) AATF-Che1 PF13339.1 gi|284161168|ref|YP_003399791.1| - 0.69 10.0 9.6 2.9 8.0 6.6 1.8 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor FliJ PF02050.11 gi|284161168|ref|YP_003399791.1| - 0.81 9.7 13.2 1.1 9.3 9.1 1.1 1 0 0 1 1 1 0 Flagellar FliJ protein Herpes_UL25 PF01499.11 gi|284161168|ref|YP_003399791.1| - 0.89 7.7 4.4 0.94 7.7 3.0 1.0 1 0 0 1 1 1 0 Herpesvirus UL25 family COG2 PF06148.6 gi|284161168|ref|YP_003399791.1| - 1.2 9.0 9.6 2.7 7.8 1.0 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2680 PF10925.3 gi|284161168|ref|YP_003399791.1| - 1.3 8.9 6.2 7.6 6.4 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2680) FliT PF05400.8 gi|284161168|ref|YP_003399791.1| - 1.3 9.4 9.5 0.97 9.8 5.5 1.7 1 1 0 1 1 1 0 Flagellar protein FliT DUF641 PF04859.7 gi|284161168|ref|YP_003399791.1| - 1.4 8.7 15.9 0.25 11.0 2.7 2.5 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) Allexi_40kDa PF05549.6 gi|284161168|ref|YP_003399791.1| - 1.5 8.0 4.1 1.4 8.1 2.6 1.3 1 1 0 1 1 1 0 Allexivirus 40kDa protein Pox_A_type_inc PF04508.7 gi|284161168|ref|YP_003399791.1| - 1.7 8.6 14.5 9 6.3 0.3 4.8 3 1 1 4 4 4 0 Viral A-type inclusion protein repeat ACCA PF03255.9 gi|284161168|ref|YP_003399791.1| - 2 7.9 10.8 3 7.3 1.9 2.2 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MscS_TM PF12794.2 gi|284161168|ref|YP_003399791.1| - 2 6.9 3.9 2.8 6.4 2.7 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 ATG16 PF08614.6 gi|284161168|ref|YP_003399791.1| - 2.1 8.1 13.9 2.1 8.1 8.6 1.8 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF2344 PF10105.4 gi|284161168|ref|YP_003399791.1| - 2.7 7.4 7.4 3.4 7.1 5.0 1.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) TBPIP PF07106.8 gi|284161168|ref|YP_003399791.1| - 4.4 6.8 18.1 37 3.8 12.6 1.9 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Seryl_tRNA_N PF02403.17 gi|284161168|ref|YP_003399791.1| - 5.8 6.9 18.1 2.5 8.1 9.9 2.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF262 PF03235.9 gi|284161168|ref|YP_003399791.1| - 6.5 6.6 7.1 8.1 6.3 4.9 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF262 Takusan PF04822.8 gi|284161168|ref|YP_003399791.1| - 7.2 6.4 13.4 5.8 6.7 5.5 2.4 1 1 1 2 2 2 0 Takusan Remorin_C PF03763.8 gi|284161168|ref|YP_003399791.1| - 7.4 6.1 19.7 7 6.2 2.4 2.8 1 1 2 3 3 3 0 Remorin, C-terminal region Meth_synt_2 PF01717.13 gi|284161169|ref|YP_003399792.1| - 3.3e-96 322.0 0.0 3.7e-96 321.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|284161169|ref|YP_003399792.1| - 8.8e-20 71.1 0.5 5.2e-17 62.0 0.2 2.0 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_1 PF08267.7 gi|284161170|ref|YP_003399793.1| - 1.4e-41 142.7 5.0 5e-37 127.8 1.9 2.0 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|284161170|ref|YP_003399793.1| - 7.8e-32 110.5 0.0 3.1e-31 108.5 0.0 1.7 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain URO-D PF01208.12 gi|284161170|ref|YP_003399793.1| - 0.04 12.8 0.0 0.079 11.8 0.0 1.5 2 0 0 2 2 2 0 Uroporphyrinogen decarboxylase (URO-D) STAS PF01740.16 gi|284161170|ref|YP_003399793.1| - 0.13 11.6 0.4 0.26 10.7 0.0 1.8 2 0 0 2 2 2 0 STAS domain Radical_SAM PF04055.16 gi|284161170|ref|YP_003399793.1| - 0.32 11.1 1.9 0.49 10.5 0.5 1.9 2 1 0 2 2 2 0 Radical SAM superfamily UPF0122 PF04297.9 gi|284161170|ref|YP_003399793.1| - 0.63 10.0 5.5 7.8 6.5 0.1 3.7 4 0 0 4 4 4 0 Putative helix-turn-helix protein, YlxM / p13 like TSC22 PF01166.13 gi|284161170|ref|YP_003399793.1| - 0.83 9.6 10.3 5.4 7.0 0.3 3.6 4 0 0 4 4 4 0 TSC-22/dip/bun family EIF_2_alpha PF07541.7 gi|284161171|ref|YP_003399794.1| - 2.9e-27 94.6 1.5 5.8e-27 93.6 1.0 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|284161171|ref|YP_003399794.1| - 4e-17 62.0 0.6 7.8e-17 61.1 0.1 1.8 2 0 0 2 2 2 1 S1 RNA binding domain TFIIB PF00382.14 gi|284161172|ref|YP_003399795.1| - 5.1e-48 160.7 4.4 7.3e-24 83.3 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|284161172|ref|YP_003399795.1| - 2e-21 75.0 1.4 3.8e-21 74.1 1.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|284161172|ref|YP_003399795.1| - 3.2e-05 23.1 1.3 0.0028 16.9 0.2 3.7 2 1 1 3 3 3 1 Sigma-70, region 4 A2L_zn_ribbon PF08792.5 gi|284161172|ref|YP_003399795.1| - 0.00051 19.4 2.4 0.0027 17.0 1.6 2.1 1 1 1 2 2 2 2 A2L zinc ribbon domain HTH_AsnC-type PF13404.1 gi|284161172|ref|YP_003399795.1| - 0.0024 17.3 0.5 0.037 13.5 0.2 2.9 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|284161172|ref|YP_003399795.1| - 0.0084 15.4 0.1 0.11 11.9 0.0 2.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|284161172|ref|YP_003399795.1| - 0.0097 15.3 0.4 0.6 9.6 0.2 3.5 2 1 1 3 3 3 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|284161172|ref|YP_003399795.1| - 0.014 15.2 1.6 1.2 8.9 0.0 3.8 3 1 1 4 4 4 0 Helix-turn-helix Cyclin_N PF00134.18 gi|284161172|ref|YP_003399795.1| - 0.024 14.1 0.0 0.64 9.5 0.0 2.4 1 1 1 2 2 2 0 Cyclin, N-terminal domain Multi-haem_cyto PF13447.1 gi|284161172|ref|YP_003399795.1| - 0.039 12.9 0.3 0.1 11.6 0.2 1.6 2 0 0 2 2 2 0 Seven times multi-haem cytochrome CxxCH zf-ribbon_3 PF13248.1 gi|284161172|ref|YP_003399795.1| - 0.041 13.0 1.2 0.16 11.2 0.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|284161172|ref|YP_003399795.1| - 0.046 13.5 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Double zinc ribbon HTH_31 PF13560.1 gi|284161172|ref|YP_003399795.1| - 0.046 13.9 3.5 2.5 8.3 0.1 3.9 4 1 0 4 4 3 0 Helix-turn-helix domain UPF0253 PF06786.7 gi|284161172|ref|YP_003399795.1| - 0.06 13.4 0.1 0.81 9.8 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Lar_restr_allev PF14354.1 gi|284161172|ref|YP_003399795.1| - 0.06 13.6 0.1 0.19 12.0 0.1 2.0 1 0 0 1 1 1 0 Restriction alleviation protein Lar HTH_37 PF13744.1 gi|284161172|ref|YP_003399795.1| - 0.062 13.1 1.2 8.4 6.2 0.0 3.7 4 1 0 4 4 3 0 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.6 gi|284161172|ref|YP_003399795.1| - 0.078 12.6 1.1 0.2 11.3 0.8 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|284161172|ref|YP_003399795.1| - 0.094 12.6 1.1 3.1 7.7 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|284161172|ref|YP_003399795.1| - 0.11 12.3 0.5 0.22 11.3 0.3 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HTH_11 PF08279.7 gi|284161172|ref|YP_003399795.1| - 0.12 12.0 1.4 0.34 10.5 0.1 2.4 3 0 0 3 3 2 0 HTH domain Zn-ribbon_8 PF09723.5 gi|284161172|ref|YP_003399795.1| - 0.12 12.2 3.2 0.88 9.5 0.2 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Auto_anti-p27 PF06677.7 gi|284161172|ref|YP_003399795.1| - 0.18 11.5 1.1 0.37 10.5 0.7 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HTH_23 PF13384.1 gi|284161172|ref|YP_003399795.1| - 0.22 11.2 4.6 0.39 10.4 0.1 3.6 3 1 0 3 3 3 0 Homeodomain-like domain DUF2863 PF11062.3 gi|284161172|ref|YP_003399795.1| - 0.36 8.8 2.1 12 3.8 1.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2863) HARE-HTH PF05066.8 gi|284161172|ref|YP_003399795.1| - 0.37 11.1 2.3 2.2 8.6 0.0 2.8 3 0 0 3 3 2 0 HB1, ASXL, restriction endonuclease HTH domain UPF0547 PF10571.4 gi|284161172|ref|YP_003399795.1| - 0.63 9.7 2.5 18 5.1 0.3 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NAD_synthase PF02540.12 gi|284161173|ref|YP_003399796.1| - 6.4e-13 48.1 0.0 1e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|284161173|ref|YP_003399796.1| - 1.7e-09 37.2 0.6 3.2e-08 33.0 0.1 2.7 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|284161173|ref|YP_003399796.1| - 7.6e-08 32.0 1.1 5.7e-07 29.1 0.7 2.3 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|284161173|ref|YP_003399796.1| - 1.3e-06 28.0 0.0 2.2e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|284161173|ref|YP_003399796.1| - 0.0003 20.3 0.2 0.0016 17.9 0.1 2.1 1 1 1 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.11 gi|284161173|ref|YP_003399796.1| - 0.00067 18.3 2.2 0.018 13.6 0.7 2.5 2 1 1 3 3 3 1 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|284161173|ref|YP_003399796.1| - 0.015 14.6 2.3 3.5 6.9 0.4 2.6 1 1 1 2 2 2 0 ATP-binding region PAPS_reduct PF01507.14 gi|284161173|ref|YP_003399796.1| - 0.096 12.5 0.1 0.48 10.2 0.1 2.1 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family YdjO PF14169.1 gi|284161173|ref|YP_003399796.1| - 0.14 11.6 0.4 0.25 10.8 0.3 1.4 1 0 0 1 1 1 0 Cold-inducible protein YdjO DUF919 PF06034.6 gi|284161173|ref|YP_003399796.1| - 0.17 11.5 2.1 0.18 11.4 0.2 2.0 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) Fe_dep_repress PF01325.14 gi|284161174|ref|YP_003399797.1| - 5.1e-25 87.1 0.5 9.6e-25 86.3 0.4 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|284161174|ref|YP_003399797.1| - 3.4e-15 55.4 1.2 6.4e-15 54.5 0.2 1.9 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HrcA_DNA-bdg PF03444.10 gi|284161174|ref|YP_003399797.1| - 2.1e-05 23.8 0.1 5e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR_2 PF12802.2 gi|284161174|ref|YP_003399797.1| - 0.00013 21.5 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|284161174|ref|YP_003399797.1| - 0.00023 21.2 0.0 0.0004 20.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|284161174|ref|YP_003399797.1| - 0.0012 18.5 0.0 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|284161174|ref|YP_003399797.1| - 0.0012 18.5 0.2 0.0026 17.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|284161174|ref|YP_003399797.1| - 0.0031 17.2 0.1 0.0082 15.8 0.1 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|284161174|ref|YP_003399797.1| - 0.0085 15.7 0.0 0.022 14.4 0.0 1.7 1 0 0 1 1 1 1 FeoC like transcriptional regulator CtsR PF05848.6 gi|284161174|ref|YP_003399797.1| - 0.0094 15.9 0.2 0.024 14.6 0.1 1.7 1 0 0 1 1 1 1 Firmicute transcriptional repressor of class III stress genes (CtsR) HTH_5 PF01022.15 gi|284161174|ref|YP_003399797.1| - 0.0099 15.5 1.3 0.1 12.2 0.0 2.7 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family Put_DNA-bind_N PF06971.8 gi|284161174|ref|YP_003399797.1| - 0.014 15.1 0.9 2 8.2 0.1 2.4 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus FeoA PF04023.9 gi|284161174|ref|YP_003399797.1| - 0.021 14.7 0.4 0.068 13.1 0.1 2.0 3 0 0 3 3 2 0 FeoA domain HTH_IclR PF09339.5 gi|284161174|ref|YP_003399797.1| - 0.024 14.1 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2284 PF10050.4 gi|284161174|ref|YP_003399797.1| - 0.031 13.8 0.4 0.054 13.0 0.3 1.4 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) FAM110_C PF14160.1 gi|284161174|ref|YP_003399797.1| - 0.04 14.8 0.0 0.067 14.1 0.0 1.5 1 0 0 1 1 1 0 Centrosome-associated C terminus HTH_23 PF13384.1 gi|284161174|ref|YP_003399797.1| - 0.042 13.5 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Antitoxin-MazE PF04014.13 gi|284161174|ref|YP_003399797.1| - 0.097 12.4 1.0 0.54 10.0 0.3 2.5 3 0 0 3 3 3 0 Antidote-toxin recognition MazE DUF4253 PF14062.1 gi|284161175|ref|YP_003399798.1| - 0.0031 17.1 0.1 0.0032 17.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4253) RHH_1 PF01402.16 gi|284161175|ref|YP_003399798.1| - 0.013 15.4 0.7 0.074 12.9 0.0 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family U3_snoRNA_assoc PF08297.6 gi|284161175|ref|YP_003399798.1| - 0.06 13.5 0.5 0.072 13.3 0.3 1.1 1 0 0 1 1 1 0 U3 snoRNA associated PSK_trans_fac PF07704.6 gi|284161175|ref|YP_003399798.1| - 0.068 13.8 0.0 0.084 13.5 0.0 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor Rsm1 PF08600.5 gi|284161175|ref|YP_003399798.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Rsm1-like PIN_4 PF13638.1 gi|284161175|ref|YP_003399798.1| - 0.14 12.2 0.2 0.14 12.2 0.2 1.1 1 0 0 1 1 1 0 PIN domain OmdA PF13376.1 gi|284161175|ref|YP_003399798.1| - 0.18 11.5 0.7 5.8 6.6 0.2 2.2 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated CxxCxxCC PF03692.10 gi|284161176|ref|YP_003399799.1| - 7.8e-12 45.5 3.7 1.6e-11 44.4 2.5 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF1759 PF03564.10 gi|284161177|ref|YP_003399800.1| - 0.0069 16.1 0.2 0.013 15.2 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1759) HMD PF03201.11 gi|284161177|ref|YP_003399800.1| - 0.078 12.9 0.1 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase UPF0047 PF01894.12 gi|284161178|ref|YP_003399801.1| - 1e-35 122.1 0.0 1.2e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Ham1p_like PF01725.11 gi|284161179|ref|YP_003399802.1| - 1.3e-49 168.1 0.0 1.5e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family CofC PF01983.11 gi|284161180|ref|YP_003399803.1| - 6.1e-65 218.2 0.5 7.5e-65 217.9 0.4 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like PBP PF01161.15 gi|284161181|ref|YP_003399804.1| - 1.2e-32 112.7 0.0 1.4e-32 112.5 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein SLA_LP_auto_ag PF05889.8 gi|284161182|ref|YP_003399805.1| - 5.3e-54 183.1 0.1 7.5e-54 182.6 0.1 1.1 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|284161182|ref|YP_003399805.1| - 2.9e-14 52.5 0.0 4.4e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|284161182|ref|YP_003399805.1| - 1.3e-09 37.5 0.0 1.6e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|284161182|ref|YP_003399805.1| - 4.2e-06 26.0 0.1 6.4e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|284161182|ref|YP_003399805.1| - 6.5e-05 22.2 0.0 0.0001 21.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|284161182|ref|YP_003399805.1| - 0.00029 19.4 0.0 0.00042 18.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain GDC-P PF02347.11 gi|284161182|ref|YP_003399805.1| - 0.0025 16.5 0.0 0.0038 15.9 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|284161182|ref|YP_003399805.1| - 0.013 13.7 0.0 0.018 13.3 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|284161182|ref|YP_003399805.1| - 0.035 12.6 0.0 0.054 12.0 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Linocin_M18 PF04454.7 gi|284161182|ref|YP_003399805.1| - 0.095 11.5 0.0 6.5 5.5 0.0 2.2 2 0 0 2 2 2 0 Encapsulating protein for peroxidase DUF4131 PF13567.1 gi|284161183|ref|YP_003399806.1| - 0.024 14.0 0.1 0.03 13.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2207 PF09972.4 gi|284161183|ref|YP_003399806.1| - 0.027 13.0 2.9 0.031 12.8 2.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SdpI PF13630.1 gi|284161183|ref|YP_003399806.1| - 0.32 10.7 6.6 0.54 10.0 4.6 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF805 PF05656.9 gi|284161183|ref|YP_003399806.1| - 1.2 8.9 4.8 1.6 8.6 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) TBP PF00352.16 gi|284161184|ref|YP_003399807.1| - 2.4e-70 231.9 0.0 8.2e-35 118.0 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|284161184|ref|YP_003399807.1| - 1.1e-06 28.6 0.0 0.013 15.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Metallophos PF00149.23 gi|284161185|ref|YP_003399808.1| - 3.2e-17 62.5 0.5 5e-17 61.9 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|284161185|ref|YP_003399808.1| - 2.2e-14 53.5 0.3 4.4e-14 52.6 0.2 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SMC_N PF02463.14 gi|284161186|ref|YP_003399809.1| - 1.4e-24 86.6 5.5 4.7e-13 48.8 1.9 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|284161186|ref|YP_003399809.1| - 4.5e-22 79.3 24.7 4.5e-22 79.3 17.1 7.1 1 1 1 4 4 2 1 AAA domain AAA_13 PF13166.1 gi|284161186|ref|YP_003399809.1| - 6.1e-15 54.7 86.3 1.5e-07 30.2 33.8 5.1 2 1 2 4 4 4 4 AAA domain Rad50_zn_hook PF04423.9 gi|284161186|ref|YP_003399809.1| - 5.8e-10 38.4 1.2 5.8e-10 38.4 0.8 10.5 11 1 0 11 11 8 1 Rad50 zinc hook motif AAA_27 PF13514.1 gi|284161186|ref|YP_003399809.1| - 6.2e-09 34.1 88.9 1.6e-07 29.4 0.0 5.0 2 1 3 5 5 5 2 AAA domain AAA_29 PF13555.1 gi|284161186|ref|YP_003399809.1| - 6.5e-06 25.5 0.0 1.1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|284161186|ref|YP_003399809.1| - 9.8e-06 25.7 52.8 0.2 11.5 16.0 5.1 2 2 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|284161186|ref|YP_003399809.1| - 2.6e-05 24.0 0.0 6.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DivIC PF04977.10 gi|284161186|ref|YP_003399809.1| - 3.3e-05 23.2 1.2 3.3e-05 23.2 0.8 11.0 6 2 6 12 12 11 3 Septum formation initiator AAA_15 PF13175.1 gi|284161186|ref|YP_003399809.1| - 0.00038 19.6 77.2 0.22 10.5 20.9 3.2 1 1 1 2 2 2 1 AAA ATPase domain Reo_sigmaC PF04582.7 gi|284161186|ref|YP_003399809.1| - 0.00047 19.4 13.1 0.35 10.0 0.2 4.7 1 1 3 5 5 5 2 Reovirus sigma C capsid protein WXG100 PF06013.7 gi|284161186|ref|YP_003399809.1| - 0.00066 19.6 6.0 0.32 11.0 0.0 6.8 6 2 2 8 8 6 1 Proteins of 100 residues with WXG DUF869 PF05911.6 gi|284161186|ref|YP_003399809.1| - 0.001 17.4 32.4 0.001 17.4 22.5 3.1 1 1 1 3 3 3 2 Plant protein of unknown function (DUF869) MCPsignal PF00015.16 gi|284161186|ref|YP_003399809.1| - 0.0036 16.8 0.1 0.0036 16.8 0.1 4.8 2 2 2 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Baculo_PEP_C PF04513.7 gi|284161186|ref|YP_003399809.1| - 0.0043 16.8 24.3 4 7.2 3.3 6.8 2 2 3 6 6 6 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3584 PF12128.3 gi|284161186|ref|YP_003399809.1| - 0.0064 13.9 82.8 0.26 8.5 30.6 3.6 2 1 2 4 4 4 2 Protein of unknown function (DUF3584) Laminin_II PF06009.7 gi|284161186|ref|YP_003399809.1| - 0.0076 16.0 1.3 0.0076 16.0 0.9 6.8 1 1 3 6 6 6 2 Laminin Domain II Syntaxin-6_N PF09177.6 gi|284161186|ref|YP_003399809.1| - 0.0083 16.5 1.6 0.0083 16.5 1.1 8.4 1 1 4 5 5 3 1 Syntaxin 6, N-terminal Spc7 PF08317.6 gi|284161186|ref|YP_003399809.1| - 0.021 13.5 108.4 0.54 8.8 17.2 5.8 1 1 4 5 5 5 0 Spc7 kinetochore protein Prefoldin PF02996.12 gi|284161186|ref|YP_003399809.1| - 0.022 14.3 0.1 0.022 14.3 0.1 10.9 3 2 7 11 11 10 0 Prefoldin subunit NPV_P10 PF05531.7 gi|284161186|ref|YP_003399809.1| - 0.053 13.7 29.7 4.8 7.5 2.0 8.1 5 3 2 7 7 7 0 Nucleopolyhedrovirus P10 protein ABC_tran PF00005.22 gi|284161186|ref|YP_003399809.1| - 0.057 13.7 18.6 7.8 6.8 0.0 5.0 1 1 0 2 2 1 0 ABC transporter MobB PF03205.9 gi|284161186|ref|YP_003399809.1| - 0.06 13.0 3.6 1.8 8.2 0.1 3.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B IncA PF04156.9 gi|284161186|ref|YP_003399809.1| - 0.082 12.4 118.5 0.38 10.3 14.3 7.2 1 1 5 6 6 5 0 IncA protein AAA_22 PF13401.1 gi|284161186|ref|YP_003399809.1| - 0.087 12.9 1.6 9.7 6.3 0.0 3.8 3 0 0 3 3 3 0 AAA domain Miro PF08477.8 gi|284161186|ref|YP_003399809.1| - 0.16 12.4 3.3 1.2 9.6 0.0 3.9 3 0 0 3 3 2 0 Miro-like protein Snapin_Pallidin PF14712.1 gi|284161186|ref|YP_003399809.1| - 0.2 12.0 65.1 0.099 12.9 3.6 9.1 3 2 5 9 9 9 0 Snapin/Pallidin PilJ PF13675.1 gi|284161186|ref|YP_003399809.1| - 0.36 11.1 23.6 4.4 7.6 0.1 7.3 1 1 5 6 6 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term GAS PF13851.1 gi|284161186|ref|YP_003399809.1| - 0.53 9.4 123.6 0.027 13.6 7.4 7.1 2 2 4 7 7 7 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.5 gi|284161186|ref|YP_003399809.1| - 0.58 10.2 61.1 0.23 11.5 6.5 6.1 2 2 5 7 7 7 0 Fibrinogen alpha/beta chain family APG17 PF04108.7 gi|284161186|ref|YP_003399809.1| - 1.5 7.5 66.1 0.59 8.8 0.4 5.2 1 1 4 5 5 5 0 Autophagy protein Apg17 DUF948 PF06103.6 gi|284161186|ref|YP_003399809.1| - 1.6 8.6 29.2 3.1 7.7 0.9 7.2 6 1 0 7 7 7 0 Bacterial protein of unknown function (DUF948) FUSC PF04632.7 gi|284161186|ref|YP_003399809.1| - 2.2 6.6 5.6 11 4.2 0.0 2.8 2 1 0 2 2 2 0 Fusaric acid resistance protein family MscS_porin PF12795.2 gi|284161186|ref|YP_003399809.1| - 5.4 6.2 55.7 0.68 9.2 4.2 6.0 1 1 6 7 7 7 0 Mechanosensitive ion channel porin domain DUF1664 PF07889.7 gi|284161186|ref|YP_003399809.1| - 9.2 6.0 59.4 0.19 11.5 5.7 7.7 3 2 3 8 8 8 0 Protein of unknown function (DUF1664) NurA PF09376.5 gi|284161187|ref|YP_003399810.1| - 4.7e-27 95.0 2.8 6.2e-27 94.6 2.0 1.2 1 0 0 1 1 1 1 NurA domain eIF-1a PF01176.14 gi|284161189|ref|YP_003399812.1| - 9.4e-29 98.6 0.6 1.1e-28 98.4 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF3891 PF13030.1 gi|284161189|ref|YP_003399812.1| - 0.071 12.5 0.0 0.078 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3891) tRNA-synt_1b PF00579.20 gi|284161190|ref|YP_003399813.1| - 7.9e-61 205.7 0.0 9.6e-61 205.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|284161190|ref|YP_003399813.1| - 1.2e-06 27.4 0.0 0.0034 16.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|284161190|ref|YP_003399813.1| - 0.011 14.9 0.0 0.034 13.2 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain RICH PF05062.7 gi|284161190|ref|YP_003399813.1| - 0.065 13.3 1.5 0.18 11.9 0.0 2.4 2 0 0 2 2 2 0 RICH domain tRNA-synt_1g PF09334.6 gi|284161190|ref|YP_003399813.1| - 0.13 10.9 0.0 0.53 8.8 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|284161190|ref|YP_003399813.1| - 0.14 10.1 0.1 0.2 9.6 0.0 1.4 2 0 0 2 2 2 0 tRNA synthetases class I (I, L, M and V) Ribosomal_L15e PF00827.12 gi|284161191|ref|YP_003399814.1| - 7e-82 273.5 10.0 8.5e-82 273.3 6.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 Abhydrolase_6 PF12697.2 gi|284161192|ref|YP_003399815.1| - 4.3e-23 82.4 0.0 7.4e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|284161192|ref|YP_003399815.1| - 3.4e-21 75.5 0.0 6e-21 74.7 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284161192|ref|YP_003399815.1| - 2.5e-06 27.2 0.0 0.017 14.6 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|284161192|ref|YP_003399815.1| - 2.5e-05 24.0 0.0 7.3e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 Putative lysophospholipase FSH1 PF03959.8 gi|284161192|ref|YP_003399815.1| - 3.6e-05 23.3 0.0 8.3e-05 22.1 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S9 PF00326.16 gi|284161192|ref|YP_003399815.1| - 0.00044 19.5 0.0 0.00061 19.0 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|284161192|ref|YP_003399815.1| - 0.0015 18.3 0.0 0.003 17.4 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein DLH PF01738.13 gi|284161192|ref|YP_003399815.1| - 0.0024 17.2 0.0 0.047 12.9 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|284161192|ref|YP_003399815.1| - 0.0031 16.9 0.0 0.036 13.4 0.0 2.6 2 1 0 3 3 3 1 Phospholipase/Carboxylesterase PhoPQ_related PF10142.4 gi|284161192|ref|YP_003399815.1| - 0.0061 15.0 0.0 0.0084 14.6 0.0 1.1 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein Peptidase_S15 PF02129.13 gi|284161192|ref|YP_003399815.1| - 0.0093 15.4 0.0 0.76 9.1 0.0 2.1 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) LIP PF03583.9 gi|284161192|ref|YP_003399815.1| - 0.048 12.8 0.0 0.076 12.2 0.0 1.4 1 1 0 1 1 1 0 Secretory lipase SF3a60_bindingd PF12108.3 gi|284161192|ref|YP_003399815.1| - 0.15 11.6 1.3 0.48 10.0 0.3 2.3 2 0 0 2 2 2 0 Splicing factor SF3a60 binding domain AP_endonuc_2 PF01261.19 gi|284161194|ref|YP_003399817.1| - 0.029 13.6 0.0 0.036 13.3 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF1822 PF08852.6 gi|284161194|ref|YP_003399817.1| - 0.13 10.9 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) PurS PF02700.9 gi|284161195|ref|YP_003399818.1| - 1.5e-29 101.7 1.6 1.6e-29 101.6 1.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase Dabb PF07876.7 gi|284161195|ref|YP_003399818.1| - 0.0049 17.2 0.5 0.066 13.6 0.1 1.9 1 1 1 2 2 2 1 Stress responsive A/B Barrel Domain PUB PF09409.5 gi|284161195|ref|YP_003399818.1| - 0.052 13.3 0.1 0.13 12.0 0.0 1.6 1 1 1 2 2 2 0 PUB domain DUF374 PF04028.8 gi|284161195|ref|YP_003399818.1| - 0.14 11.3 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF374) AIRS_C PF02769.17 gi|284161196|ref|YP_003399819.1| - 4.8e-51 172.7 0.9 4.5e-32 111.1 0.1 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|284161196|ref|YP_003399819.1| - 3.8e-34 116.8 0.1 1.3e-21 76.6 0.0 2.8 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain Methyltransf_26 PF13659.1 gi|284161197|ref|YP_003399820.1| - 2.6e-11 43.5 0.0 3.7e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284161197|ref|YP_003399820.1| - 2.1e-09 37.0 0.0 3e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0146 PF03686.8 gi|284161197|ref|YP_003399820.1| - 7.5e-05 22.5 0.1 0.00014 21.6 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_31 PF13847.1 gi|284161197|ref|YP_003399820.1| - 0.0014 18.2 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|284161197|ref|YP_003399820.1| - 0.0041 16.1 0.0 0.0058 15.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|284161197|ref|YP_003399820.1| - 0.017 14.8 0.0 0.027 14.1 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|284161197|ref|YP_003399820.1| - 0.024 13.7 0.0 0.051 12.6 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|284161197|ref|YP_003399820.1| - 0.053 12.9 0.0 0.072 12.4 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_12 PF08242.7 gi|284161197|ref|YP_003399820.1| - 0.054 13.9 0.1 0.15 12.5 0.0 1.8 3 0 0 3 3 2 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284161197|ref|YP_003399820.1| - 0.063 13.8 0.0 0.1 13.2 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284161197|ref|YP_003399820.1| - 0.085 13.3 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Endonuc-dimeris PF09124.5 gi|284161198|ref|YP_003399821.1| - 0.066 12.8 0.0 0.093 12.3 0.0 1.2 1 0 0 1 1 1 0 T4 recombination endonuclease VII, dimerisation DUF377 PF04041.8 gi|284161198|ref|YP_003399821.1| - 0.08 11.6 0.0 0.083 11.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF377) RrnaAD PF00398.15 gi|284161199|ref|YP_003399822.1| - 2.3e-51 174.3 0.0 2.6e-51 174.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|284161199|ref|YP_003399822.1| - 1.9e-12 47.2 0.0 2.6e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284161199|ref|YP_003399822.1| - 1e-07 32.4 0.0 3.4e-07 30.8 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284161199|ref|YP_003399822.1| - 4e-06 26.4 0.0 7.3e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284161199|ref|YP_003399822.1| - 8.4e-06 26.1 0.0 1.5e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284161199|ref|YP_003399822.1| - 1e-05 25.9 0.0 2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284161199|ref|YP_003399822.1| - 0.00013 22.2 0.0 0.0002 21.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284161199|ref|YP_003399822.1| - 0.00017 21.0 0.0 0.00026 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|284161199|ref|YP_003399822.1| - 0.00091 18.9 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|284161199|ref|YP_003399822.1| - 0.023 14.2 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Zeta_toxin PF06414.7 gi|284161199|ref|YP_003399822.1| - 0.053 12.6 0.0 0.16 11.0 0.0 1.8 1 1 1 2 2 2 0 Zeta toxin Methyltransf_PK PF05891.7 gi|284161199|ref|YP_003399822.1| - 0.06 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase MetW PF07021.7 gi|284161199|ref|YP_003399822.1| - 0.082 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DOT1 PF08123.8 gi|284161199|ref|YP_003399822.1| - 0.094 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 Spermine_synth PF01564.12 gi|284161199|ref|YP_003399822.1| - 0.11 11.3 0.1 0.17 10.7 0.1 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase AdoMet_MTase PF07757.8 gi|284161199|ref|YP_003399822.1| - 0.12 12.4 0.2 0.78 9.8 0.1 2.2 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase Asn_synthase PF00733.16 gi|284161201|ref|YP_003399824.1| - 3.9e-42 144.5 0.1 6.2e-42 143.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|284161201|ref|YP_003399824.1| - 0.0037 16.9 0.0 0.034 13.8 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain NUDIX_4 PF14815.1 gi|284161201|ref|YP_003399824.1| - 0.071 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 NUDIX domain ATP_bind_3 PF01171.15 gi|284161201|ref|YP_003399824.1| - 0.31 10.5 2.4 6.6 6.1 1.6 2.3 1 1 0 1 1 1 0 PP-loop family CxxCxxCC PF03692.10 gi|284161202|ref|YP_003399825.1| - 1e-18 67.5 1.3 1.2e-18 67.2 0.9 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain TYW3 PF02676.9 gi|284161203|ref|YP_003399826.1| - 1.9e-52 177.3 0.0 2.3e-52 177.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 tRNA-synt_2c PF01411.14 gi|284161204|ref|YP_003399827.1| - 7e-135 450.4 0.0 1.1e-134 449.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|284161204|ref|YP_003399827.1| - 1e-14 54.0 1.6 1e-14 54.0 1.1 2.2 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|284161204|ref|YP_003399827.1| - 3.6e-08 32.9 1.7 9.5e-08 31.6 1.2 1.8 1 0 0 1 1 1 1 DHHA1 domain UDPGP PF01704.13 gi|284161204|ref|YP_003399827.1| - 0.016 13.7 0.7 0.027 12.9 0.5 1.3 1 0 0 1 1 1 0 UTP--glucose-1-phosphate uridylyltransferase TA0956 PF11513.3 gi|284161204|ref|YP_003399827.1| - 0.021 14.8 0.8 0.074 13.1 0.6 1.9 1 0 0 1 1 1 0 Thermoplasma acidophilum protein TA0956 RloB PF13707.1 gi|284161204|ref|YP_003399827.1| - 1.2 8.8 5.6 0.12 12.0 0.4 1.8 2 0 0 2 2 2 0 RloB-like protein Fer4 PF00037.22 gi|284161205|ref|YP_003399828.1| - 6.6e-19 66.6 38.5 3.6e-06 26.3 2.2 4.8 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284161205|ref|YP_003399828.1| - 3.2e-16 59.3 74.6 8.3e-07 29.1 8.3 3.1 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284161205|ref|YP_003399828.1| - 5.1e-16 58.7 27.3 1.4e-06 28.5 8.6 3.4 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284161205|ref|YP_003399828.1| - 4.5e-15 54.7 33.8 2.1e-05 24.1 0.3 4.1 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|284161205|ref|YP_003399828.1| - 5.5e-14 51.1 35.1 1.2e-05 24.9 1.6 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284161205|ref|YP_003399828.1| - 7.7e-13 48.0 27.8 1.9e-06 27.5 8.0 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284161205|ref|YP_003399828.1| - 1.7e-11 43.4 34.8 0.00021 21.3 2.1 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|284161205|ref|YP_003399828.1| - 2.2e-11 43.4 14.8 4.2e-10 39.4 8.0 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161205|ref|YP_003399828.1| - 2.7e-10 40.8 22.4 0.016 15.9 0.4 4.1 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|284161205|ref|YP_003399828.1| - 4.8e-09 36.1 46.8 0.0067 16.9 5.1 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284161205|ref|YP_003399828.1| - 1.6e-08 34.4 24.4 0.0038 17.2 10.4 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284161205|ref|YP_003399828.1| - 2.4e-08 34.2 25.1 0.042 14.1 1.5 4.1 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284161205|ref|YP_003399828.1| - 2.7e-08 34.2 23.9 2e-05 25.0 0.1 4.0 2 1 2 4 4 4 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|284161205|ref|YP_003399828.1| - 1.7e-07 30.9 32.5 0.0011 18.7 0.4 3.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284161205|ref|YP_003399828.1| - 3.8e-06 27.1 20.2 0.00097 19.4 0.0 3.9 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284161205|ref|YP_003399828.1| - 4.8e-06 26.9 36.1 0.046 14.1 2.7 4.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_5 PF12801.2 gi|284161205|ref|YP_003399828.1| - 0.1 12.4 4.2 4 7.3 0.4 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain AFP PF02420.10 gi|284161205|ref|YP_003399828.1| - 0.14 12.3 1.2 0.14 12.3 0.8 3.8 4 1 0 4 4 2 0 Insect antifreeze protein repeat Fer4_19 PF06902.6 gi|284161205|ref|YP_003399828.1| - 4.7 7.1 23.6 0.74 9.6 0.6 4.2 3 1 1 4 4 4 0 Divergent 4Fe-4S mono-cluster AFOR_C PF01314.13 gi|284161206|ref|YP_003399829.1| - 1.8e-65 221.0 0.0 2.7e-65 220.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|284161206|ref|YP_003399829.1| - 7.5e-59 198.4 0.1 1.1e-58 197.8 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AWPM-19 PF05512.6 gi|284161206|ref|YP_003399829.1| - 0.077 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AWPM-19-like family MarR_2 PF12802.2 gi|284161207|ref|YP_003399830.1| - 1e-10 41.0 0.2 1.9e-10 40.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284161207|ref|YP_003399830.1| - 2.5e-10 39.5 0.5 5.2e-10 38.5 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284161207|ref|YP_003399830.1| - 9.9e-09 34.7 0.1 1.9e-08 33.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284161207|ref|YP_003399830.1| - 3.3e-07 29.7 0.1 6e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|284161207|ref|YP_003399830.1| - 2e-06 27.4 0.2 5.7e-06 25.9 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|284161207|ref|YP_003399830.1| - 3.6e-06 26.5 0.5 1.3e-05 24.7 0.2 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|284161207|ref|YP_003399830.1| - 9.6e-06 25.4 0.1 1.9e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|284161207|ref|YP_003399830.1| - 1.8e-05 24.4 0.3 7.7e-05 22.4 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|284161207|ref|YP_003399830.1| - 0.00056 19.9 0.1 0.001 19.1 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_Crp_2 PF13545.1 gi|284161207|ref|YP_003399830.1| - 0.00086 19.0 0.1 0.0023 17.6 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_CodY PF08222.6 gi|284161207|ref|YP_003399830.1| - 0.0012 18.1 0.3 0.0025 17.1 0.2 1.6 1 0 0 1 1 1 1 CodY helix-turn-helix domain NMT1_2 PF13379.1 gi|284161207|ref|YP_003399830.1| - 0.0013 18.1 0.0 0.025 13.9 0.0 2.1 1 1 0 1 1 1 1 NMT1-like family TFIIE_alpha PF02002.12 gi|284161207|ref|YP_003399830.1| - 0.0013 18.2 0.0 0.0036 16.7 0.0 1.7 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|284161207|ref|YP_003399830.1| - 0.0017 17.7 1.9 0.0021 17.4 0.5 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|284161207|ref|YP_003399830.1| - 0.0041 16.9 0.1 0.036 13.9 0.1 2.3 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) EAP30 PF04157.11 gi|284161207|ref|YP_003399830.1| - 0.0046 16.1 0.1 0.0088 15.2 0.1 1.5 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_27 PF13463.1 gi|284161207|ref|YP_003399830.1| - 0.0046 17.2 0.1 0.0091 16.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|284161207|ref|YP_003399830.1| - 0.0087 15.8 0.0 0.039 13.7 0.0 2.0 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC HTH_DeoR PF08220.7 gi|284161207|ref|YP_003399830.1| - 0.0088 15.5 0.2 0.018 14.5 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain SBP_bac_3 PF00497.15 gi|284161207|ref|YP_003399830.1| - 0.015 14.5 0.0 0.059 12.6 0.0 2.0 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 HxlR PF01638.12 gi|284161207|ref|YP_003399830.1| - 0.022 14.4 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 HxlR-like helix-turn-helix Sulfolobus_pRN PF05584.6 gi|284161207|ref|YP_003399830.1| - 0.024 14.6 0.1 0.05 13.5 0.1 1.6 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_10 PF04967.7 gi|284161207|ref|YP_003399830.1| - 0.026 14.0 0.1 0.076 12.5 0.1 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_45 PF14947.1 gi|284161207|ref|YP_003399830.1| - 0.033 14.0 0.1 0.094 12.5 0.0 1.7 2 0 0 2 2 1 0 Winged helix-turn-helix HTH_28 PF13518.1 gi|284161207|ref|YP_003399830.1| - 0.039 13.9 0.1 0.088 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|284161207|ref|YP_003399830.1| - 0.049 13.7 0.0 0.14 12.3 0.0 1.8 1 0 0 1 1 1 0 FaeA-like protein HTH_36 PF13730.1 gi|284161207|ref|YP_003399830.1| - 0.077 13.1 0.3 0.29 11.2 0.1 2.2 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_12 PF08461.5 gi|284161207|ref|YP_003399830.1| - 0.09 12.5 0.2 18 5.1 0.1 3.4 3 1 0 3 3 3 0 Ribonuclease R winged-helix domain HTH_38 PF13936.1 gi|284161207|ref|YP_003399830.1| - 0.092 12.3 0.1 0.32 10.5 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain MerR PF00376.18 gi|284161207|ref|YP_003399830.1| - 0.1 12.1 0.1 5.7 6.5 0.0 2.4 2 0 0 2 2 2 0 MerR family regulatory protein HTH_AsnC-type PF13404.1 gi|284161207|ref|YP_003399830.1| - 0.15 11.6 0.1 0.35 10.4 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain 7tm_3 PF00003.17 gi|284161208|ref|YP_003399831.1| - 0.065 12.5 1.4 0.069 12.4 0.9 1.1 1 0 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF3989 PF13150.1 gi|284161208|ref|YP_003399831.1| - 0.12 11.8 2.0 0.13 11.7 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3989) Abi PF02517.11 gi|284161208|ref|YP_003399831.1| - 2.1 8.5 4.3 2.2 8.4 3.0 1.0 1 0 0 1 1 1 0 CAAX protease self-immunity SSF PF00474.12 gi|284161209|ref|YP_003399832.1| - 5.8e-26 91.0 35.0 5.8e-26 91.0 24.2 3.1 2 1 1 3 3 3 1 Sodium:solute symporter family AMMECR1 PF01871.12 gi|284161210|ref|YP_003399833.1| - 4.2e-61 205.0 0.0 5e-61 204.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 ABC_tran PF00005.22 gi|284161211|ref|YP_003399834.1| - 2.6e-34 118.4 0.0 3.3e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284161211|ref|YP_003399834.1| - 3.2e-21 75.4 0.1 5.7e-21 74.6 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284161211|ref|YP_003399834.1| - 0.00016 21.7 0.1 0.038 13.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284161211|ref|YP_003399834.1| - 0.012 15.7 1.0 0.13 12.4 0.7 2.1 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284161211|ref|YP_003399834.1| - 0.018 15.3 0.0 0.032 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain DEP PF00610.16 gi|284161211|ref|YP_003399834.1| - 0.05 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) AAA_29 PF13555.1 gi|284161211|ref|YP_003399834.1| - 0.11 12.1 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|284161211|ref|YP_003399834.1| - 0.13 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|284161211|ref|YP_003399834.1| - 0.14 11.3 0.3 0.35 10.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|284161212|ref|YP_003399835.1| - 1e-31 110.0 0.0 1.4e-31 109.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284161212|ref|YP_003399835.1| - 3.4e-20 72.1 0.1 6.6e-20 71.2 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284161212|ref|YP_003399835.1| - 9.3e-12 45.4 0.3 2.9e-09 37.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284161212|ref|YP_003399835.1| - 5.5e-07 29.0 0.4 1.6e-06 27.5 0.3 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|284161212|ref|YP_003399835.1| - 4e-05 22.8 0.4 0.08 11.9 0.1 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|284161212|ref|YP_003399835.1| - 0.00055 19.3 0.0 0.0028 17.1 0.0 2.1 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|284161212|ref|YP_003399835.1| - 0.00073 19.5 0.1 0.0014 18.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|284161212|ref|YP_003399835.1| - 0.00078 18.9 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|284161212|ref|YP_003399835.1| - 0.0011 18.4 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|284161212|ref|YP_003399835.1| - 0.0086 16.2 0.6 0.069 13.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|284161212|ref|YP_003399835.1| - 0.013 15.1 0.1 0.03 13.9 0.0 1.7 1 1 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|284161212|ref|YP_003399835.1| - 0.016 15.3 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PRK PF00485.13 gi|284161212|ref|YP_003399835.1| - 0.02 14.4 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|284161212|ref|YP_003399835.1| - 0.021 13.6 0.0 0.041 12.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain DUF258 PF03193.11 gi|284161212|ref|YP_003399835.1| - 0.023 13.9 0.2 0.047 12.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|284161212|ref|YP_003399835.1| - 0.029 14.0 1.5 0.93 9.1 1.0 2.2 1 1 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|284161212|ref|YP_003399835.1| - 0.041 14.0 0.3 0.12 12.5 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|284161212|ref|YP_003399835.1| - 0.047 13.4 0.6 0.19 11.5 0.1 2.0 2 1 0 2 2 2 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|284161212|ref|YP_003399835.1| - 0.066 12.6 0.9 1.9 7.8 0.1 2.3 2 1 0 2 2 2 0 AAA-like domain ABC_ATPase PF09818.4 gi|284161212|ref|YP_003399835.1| - 0.11 11.0 0.3 0.71 8.3 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MobB PF03205.9 gi|284161212|ref|YP_003399835.1| - 0.12 12.0 0.1 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|284161212|ref|YP_003399835.1| - 0.17 11.2 0.1 0.59 9.5 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_1 PF00528.17 gi|284161213|ref|YP_003399836.1| - 9.9e-24 83.8 12.7 9.9e-24 83.8 8.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|284161213|ref|YP_003399836.1| - 1.6e-06 27.3 2.5 1.6e-06 27.3 1.7 3.3 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C FtsX PF02687.16 gi|284161213|ref|YP_003399836.1| - 9.9 5.9 26.2 0.079 12.7 1.7 3.6 2 1 2 4 4 4 0 FtsX-like permease family BPD_transp_1 PF00528.17 gi|284161214|ref|YP_003399837.1| - 4e-49 166.6 14.8 4e-49 166.6 10.3 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|284161215|ref|YP_003399838.1| - 1.9e-95 319.8 3.1 2.4e-95 319.5 2.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle tRNA_NucTransf2 PF09249.6 gi|284161216|ref|YP_003399839.1| - 1.8e-43 147.0 0.5 1.9e-42 143.7 0.0 2.5 3 0 0 3 3 3 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|284161216|ref|YP_003399839.1| - 9.5e-14 51.5 1.8 1.7e-13 50.6 0.1 2.4 2 1 0 2 2 2 1 Nucleotidyltransferase domain DNA_gyraseB PF00204.20 gi|284161217|ref|YP_003399840.1| - 2.8e-59 199.1 0.1 4.8e-59 198.4 0.1 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|284161217|ref|YP_003399840.1| - 2.9e-29 100.6 0.5 6.7e-29 99.4 0.4 1.7 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|284161217|ref|YP_003399840.1| - 1.3e-26 92.4 0.0 3.3e-26 91.1 0.0 1.7 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|284161217|ref|YP_003399840.1| - 4.8e-17 61.6 0.0 8.6e-17 60.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|284161217|ref|YP_003399840.1| - 2e-05 24.2 0.0 4.5e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATP_bind_1 PF03029.12 gi|284161218|ref|YP_003399841.1| - 8.1e-60 202.3 0.0 9.2e-60 202.1 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|284161218|ref|YP_003399841.1| - 0.00014 22.6 0.1 0.00028 21.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|284161218|ref|YP_003399841.1| - 0.00094 18.6 0.1 0.32 10.4 0.0 2.8 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.1 gi|284161218|ref|YP_003399841.1| - 0.0042 17.0 0.0 0.0082 16.1 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|284161218|ref|YP_003399841.1| - 0.0094 15.9 0.0 0.044 13.7 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|284161218|ref|YP_003399841.1| - 0.012 15.9 0.0 0.02 15.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|284161218|ref|YP_003399841.1| - 0.014 14.8 0.0 0.5 9.8 0.0 2.9 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.1 gi|284161218|ref|YP_003399841.1| - 0.015 14.8 0.1 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.7 gi|284161218|ref|YP_003399841.1| - 0.028 13.5 0.0 0.092 11.8 0.0 1.8 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region PhoH PF02562.11 gi|284161218|ref|YP_003399841.1| - 0.044 13.0 0.0 0.082 12.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.1 gi|284161218|ref|YP_003399841.1| - 0.056 13.0 0.0 0.13 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|284161218|ref|YP_003399841.1| - 0.092 12.8 0.0 0.15 12.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain Ras PF00071.17 gi|284161218|ref|YP_003399841.1| - 0.11 11.8 0.0 11 5.4 0.0 2.6 2 1 0 2 2 2 0 Ras family KAP_NTPase PF07693.9 gi|284161218|ref|YP_003399841.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain PBP_like_2 PF12849.2 gi|284161219|ref|YP_003399842.1| - 1.1e-55 189.1 0.1 1.4e-55 188.7 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|284161219|ref|YP_003399842.1| - 1.8e-23 83.7 3.1 2.4e-23 83.3 2.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|284161219|ref|YP_003399842.1| - 1.7e-06 27.0 0.0 5.6e-06 25.4 0.0 1.8 1 1 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.17 gi|284161220|ref|YP_003399843.1| - 7.3e-11 41.9 17.9 7.3e-11 41.9 12.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|284161221|ref|YP_003399844.1| - 2.6e-15 56.4 19.2 2.6e-15 56.4 13.3 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|284161222|ref|YP_003399845.1| - 4.5e-32 111.2 0.0 5.9e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284161222|ref|YP_003399845.1| - 5.2e-14 52.8 0.0 1.5e-08 34.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284161222|ref|YP_003399845.1| - 1.5e-07 30.8 0.1 8.9e-07 28.3 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284161222|ref|YP_003399845.1| - 2.4e-05 24.4 0.0 7.1e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284161222|ref|YP_003399845.1| - 5.1e-05 22.4 0.0 0.00074 18.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|284161222|ref|YP_003399845.1| - 0.00016 21.7 0.1 0.00067 19.6 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|284161222|ref|YP_003399845.1| - 0.0013 17.9 0.0 0.0047 16.1 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF258 PRK PF00485.13 gi|284161222|ref|YP_003399845.1| - 0.0014 18.2 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|284161222|ref|YP_003399845.1| - 0.0036 17.2 0.0 0.0078 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284161222|ref|YP_003399845.1| - 0.0036 16.8 0.0 0.0066 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|284161222|ref|YP_003399845.1| - 0.0053 17.5 0.2 0.015 16.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|284161222|ref|YP_003399845.1| - 0.006 16.3 0.3 0.015 14.9 0.2 2.0 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|284161222|ref|YP_003399845.1| - 0.0068 16.7 0.0 0.014 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|284161222|ref|YP_003399845.1| - 0.0073 15.9 0.0 0.021 14.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|284161222|ref|YP_003399845.1| - 0.01 15.7 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284161222|ref|YP_003399845.1| - 0.016 15.5 0.1 0.038 14.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|284161222|ref|YP_003399845.1| - 0.022 14.4 0.0 0.79 9.5 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|284161222|ref|YP_003399845.1| - 0.024 14.2 0.0 0.061 12.9 0.0 1.6 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.10 gi|284161222|ref|YP_003399845.1| - 0.026 13.2 0.0 0.028 13.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|284161222|ref|YP_003399845.1| - 0.028 14.3 0.1 0.39 10.6 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|284161222|ref|YP_003399845.1| - 0.041 13.8 0.0 0.076 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|284161222|ref|YP_003399845.1| - 0.049 13.0 0.0 0.12 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain Phi-29_GP3 PF05435.6 gi|284161222|ref|YP_003399845.1| - 0.058 12.6 0.0 0.13 11.4 0.0 1.5 2 0 0 2 2 2 0 Phi-29 DNA terminal protein GP3 AAA PF00004.24 gi|284161222|ref|YP_003399845.1| - 0.06 13.5 0.2 0.36 11.0 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|284161222|ref|YP_003399845.1| - 0.063 12.8 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.9 gi|284161222|ref|YP_003399845.1| - 0.081 11.9 0.0 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_5 PF07728.9 gi|284161222|ref|YP_003399845.1| - 0.083 12.6 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|284161222|ref|YP_003399845.1| - 0.084 12.2 0.0 0.35 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|284161222|ref|YP_003399845.1| - 0.092 12.9 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase cobW PF02492.14 gi|284161222|ref|YP_003399845.1| - 0.11 11.9 0.0 0.32 10.4 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.12 gi|284161222|ref|YP_003399845.1| - 0.12 11.8 0.1 0.96 8.8 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein G-alpha PF00503.15 gi|284161222|ref|YP_003399845.1| - 0.13 10.9 0.0 0.19 10.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit COG4 PF08318.7 gi|284161222|ref|YP_003399845.1| - 0.14 10.8 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 COG4 transport protein PhoU PF01895.14 gi|284161223|ref|YP_003399846.1| - 8.2e-15 55.0 0.8 2.2e-06 27.9 0.1 2.2 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|284161223|ref|YP_003399846.1| - 0.16 11.1 5.0 4.9 6.2 3.5 2.2 1 1 0 1 1 1 0 Protein of unknown function DUF47 PhoU PF01895.14 gi|284161224|ref|YP_003399847.1| - 9e-21 74.1 12.9 4.1e-12 46.3 0.4 2.9 3 1 0 3 3 3 2 PhoU domain Antitoxin-MazE PF04014.13 gi|284161224|ref|YP_003399847.1| - 8.2e-10 38.1 0.4 1.8e-09 37.1 0.0 1.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE MutS_III PF05192.13 gi|284161224|ref|YP_003399847.1| - 0.038 13.7 0.7 0.056 13.2 0.5 1.3 1 0 0 1 1 1 0 MutS domain III Hemerythrin PF01814.18 gi|284161224|ref|YP_003399847.1| - 0.076 13.1 0.3 0.63 10.2 0.0 2.4 2 1 1 3 3 3 0 Hemerythrin HHE cation binding domain tRNA-synt_1d PF00750.14 gi|284161225|ref|YP_003399848.1| - 2e-55 188.0 0.1 2.7e-55 187.6 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|284161225|ref|YP_003399848.1| - 1.3e-35 121.8 0.1 4e-35 120.3 0.1 1.9 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|284161225|ref|YP_003399848.1| - 1.6e-15 57.3 0.1 7.9e-15 55.1 0.1 2.2 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|284161225|ref|YP_003399848.1| - 3.3e-07 29.3 0.3 0.0098 14.6 0.1 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|284161225|ref|YP_003399848.1| - 8.6e-06 24.6 0.5 0.033 12.8 0.1 3.2 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|284161225|ref|YP_003399848.1| - 0.0027 16.8 0.1 0.0051 15.9 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|284161225|ref|YP_003399848.1| - 0.064 11.2 0.0 0.11 10.4 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) Lactamase_B PF00753.22 gi|284161226|ref|YP_003399849.1| - 4.7e-13 49.2 3.4 7.3e-13 48.6 2.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284161226|ref|YP_003399849.1| - 9.8e-06 25.2 2.6 1.8e-05 24.3 1.8 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain bPH_2 PF03703.9 gi|284161227|ref|YP_003399850.1| - 4.9e-13 48.9 0.2 8.5e-13 48.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial PH domain DUF2798 PF11391.3 gi|284161227|ref|YP_003399850.1| - 0.0034 17.1 0.1 0.0098 15.6 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2798) UPF0542 PF15086.1 gi|284161227|ref|YP_003399850.1| - 0.25 11.0 4.1 0.91 9.2 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0542 Sua5_yciO_yrdC PF01300.13 gi|284161228|ref|YP_003399851.1| - 5.7e-57 191.8 0.1 7.9e-57 191.3 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination BMC PF00936.14 gi|284161228|ref|YP_003399851.1| - 0.049 13.3 0.3 0.13 11.9 0.1 1.7 2 0 0 2 2 2 0 BMC domain Pyr_redox PF00070.22 gi|284161229|ref|YP_003399852.1| - 2.4e-23 82.3 2.6 8.5e-18 64.5 0.1 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284161229|ref|YP_003399852.1| - 2e-19 70.2 3.1 2.7e-17 63.3 2.2 3.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284161229|ref|YP_003399852.1| - 8.9e-11 41.2 7.6 0.00013 20.9 0.1 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|284161229|ref|YP_003399852.1| - 7.1e-07 29.4 0.6 0.0039 17.2 0.0 3.2 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284161229|ref|YP_003399852.1| - 2.1e-06 26.8 3.4 0.0002 20.3 0.1 3.1 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.17 gi|284161229|ref|YP_003399852.1| - 4.5e-05 22.4 0.6 0.0002 20.3 0.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|284161229|ref|YP_003399852.1| - 0.00016 21.6 0.4 0.029 14.3 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|284161229|ref|YP_003399852.1| - 0.00027 20.6 0.4 0.0018 17.9 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.9 gi|284161229|ref|YP_003399852.1| - 0.0013 17.2 1.1 0.0035 15.8 0.0 2.3 3 0 0 3 3 3 1 HI0933-like protein TrkA_N PF02254.13 gi|284161229|ref|YP_003399852.1| - 0.0019 18.2 0.9 1.8 8.5 0.0 2.6 2 0 0 2 2 2 2 TrkA-N domain FAD_binding_3 PF01494.14 gi|284161229|ref|YP_003399852.1| - 0.0029 16.7 1.3 0.021 13.8 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.7 gi|284161229|ref|YP_003399852.1| - 0.0029 16.5 2.0 0.055 12.3 0.0 2.7 2 1 1 3 3 3 1 Lycopene cyclase protein CPSase_L_chain PF00289.17 gi|284161229|ref|YP_003399852.1| - 0.013 15.5 1.0 0.076 13.1 0.0 2.6 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_10 PF13460.1 gi|284161229|ref|YP_003399852.1| - 0.03 14.3 0.2 0.25 11.3 0.0 2.4 2 0 0 2 2 2 0 NADH(P)-binding IlvN PF07991.7 gi|284161229|ref|YP_003399852.1| - 0.037 13.3 0.1 0.096 12.0 0.0 1.8 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain K_oxygenase PF13434.1 gi|284161229|ref|YP_003399852.1| - 0.052 12.4 0.3 0.091 11.6 0.0 1.6 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.2 gi|284161229|ref|YP_003399852.1| - 0.055 12.5 2.2 0.087 11.8 0.1 2.3 2 1 1 3 3 3 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|284161229|ref|YP_003399852.1| - 0.069 12.7 3.7 4.5 6.7 0.0 3.4 3 1 1 4 4 4 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA_C PF08546.6 gi|284161230|ref|YP_003399853.1| - 1.2e-38 131.9 0.2 1.9e-38 131.2 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|284161230|ref|YP_003399853.1| - 2.2e-27 95.3 0.1 1.9e-26 92.3 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DUF1269 PF06897.7 gi|284161230|ref|YP_003399853.1| - 0.012 15.6 0.0 0.12 12.4 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) F420_oxidored PF03807.12 gi|284161230|ref|YP_003399853.1| - 0.059 13.8 0.1 0.17 12.3 0.1 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sm_multidrug_ex PF06695.6 gi|284161231|ref|YP_003399854.1| - 6.7e-42 142.4 1.6 8.3e-42 142.1 1.1 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein Radical_SAM PF04055.16 gi|284161232|ref|YP_003399855.1| - 9.9e-21 74.6 0.0 4.2e-19 69.3 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily AP_endonuc_2 PF01261.19 gi|284161232|ref|YP_003399855.1| - 0.0048 16.2 0.0 0.011 15.0 0.0 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel zf-ribbon_3 PF13248.1 gi|284161232|ref|YP_003399855.1| - 0.0055 15.8 3.7 0.19 10.9 0.0 3.5 3 0 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284161232|ref|YP_003399855.1| - 0.054 13.0 6.9 0.45 10.0 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain HOOK PF05622.7 gi|284161232|ref|YP_003399855.1| - 0.17 9.6 0.0 0.22 9.2 0.0 1.0 1 0 0 1 1 1 0 HOOK protein DZR PF12773.2 gi|284161232|ref|YP_003399855.1| - 0.18 11.6 0.1 0.18 11.6 0.1 2.5 3 0 0 3 3 3 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|284161232|ref|YP_003399855.1| - 0.19 11.2 0.0 0.19 11.2 0.0 3.1 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-CCHC PF00098.18 gi|284161232|ref|YP_003399855.1| - 1.4 9.0 7.8 3.8 7.5 1.5 3.1 2 0 0 2 2 2 0 Zinc knuckle EcKinase PF02958.15 gi|284161233|ref|YP_003399856.1| - 0.0095 15.1 0.1 0.015 14.4 0.1 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1160 PF06648.6 gi|284161233|ref|YP_003399856.1| - 0.1 12.4 0.1 5.5 6.7 0.0 3.0 2 1 2 4 4 4 0 Protein of unknown function (DUF1160) DUF4158 PF13700.1 gi|284161233|ref|YP_003399856.1| - 0.11 11.9 0.3 0.69 9.3 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4158) TPR_6 PF13174.1 gi|284161233|ref|YP_003399856.1| - 0.15 12.5 0.3 1.7 9.2 0.0 3.0 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF2283 PF10049.4 gi|284161234|ref|YP_003399857.1| - 2.8e-16 59.1 1.3 3.4e-16 58.8 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) KTSC PF13619.1 gi|284161234|ref|YP_003399857.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 KTSC domain DUF4258 PF14076.1 gi|284161235|ref|YP_003399858.1| - 7.5e-10 38.6 1.3 1.7e-09 37.5 0.9 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4258) SLIDE PF09111.5 gi|284161235|ref|YP_003399858.1| - 0.026 14.2 0.1 0.03 14.0 0.1 1.2 1 0 0 1 1 1 0 SLIDE Clat_adaptor_s PF01217.15 gi|284161235|ref|YP_003399858.1| - 0.087 12.5 0.1 0.089 12.5 0.1 1.1 1 0 0 1 1 1 0 Clathrin adaptor complex small chain HTH_29 PF13551.1 gi|284161236|ref|YP_003399859.1| - 0.026 14.6 0.1 0.056 13.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_32 PF13565.1 gi|284161236|ref|YP_003399859.1| - 0.026 15.3 0.1 0.19 12.5 0.1 2.4 1 1 1 2 2 2 0 Homeodomain-like domain HTH_21 PF13276.1 gi|284161236|ref|YP_003399859.1| - 0.028 14.4 0.7 0.075 13.0 0.1 2.1 2 0 0 2 2 2 0 HTH-like domain Orbi_NS1 PF01718.11 gi|284161236|ref|YP_003399859.1| - 0.036 12.0 0.2 0.045 11.7 0.2 1.1 1 0 0 1 1 1 0 Orbivirus non-structural protein NS1, or hydrophobic tubular protein Linker_histone PF00538.14 gi|284161236|ref|YP_003399859.1| - 0.053 13.6 2.9 0.082 13.0 0.5 2.2 2 1 0 2 2 2 0 linker histone H1 and H5 family LRAT PF04970.8 gi|284161236|ref|YP_003399859.1| - 0.11 12.4 0.1 0.16 11.9 0.1 1.2 1 0 0 1 1 1 0 Lecithin retinol acyltransferase DUF4407 PF14362.1 gi|284161236|ref|YP_003399859.1| - 0.14 11.1 1.1 0.18 10.7 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HTH_38 PF13936.1 gi|284161236|ref|YP_003399859.1| - 0.83 9.2 3.5 2.9 7.5 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain Radical_SAM PF04055.16 gi|284161238|ref|YP_003399861.1| - 2.5e-06 27.7 0.0 4.4e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|284161238|ref|YP_003399861.1| - 0.00035 20.5 0.0 0.0026 17.7 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|284161238|ref|YP_003399861.1| - 0.0029 17.7 0.1 0.017 15.2 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF4423 PF14394.1 gi|284161238|ref|YP_003399861.1| - 0.0081 15.7 0.1 0.19 11.2 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) DNA_primase_S PF01896.14 gi|284161243|ref|YP_003399866.1| - 0.0051 16.6 0.0 0.034 13.9 0.0 2.2 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit CMD PF02627.15 gi|284161243|ref|YP_003399866.1| - 0.036 13.8 0.0 0.081 12.7 0.0 1.6 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family UvrD-helicase PF00580.16 gi|284161244|ref|YP_003399867.1| - 5.2e-19 68.6 0.3 2.7e-11 43.3 0.3 2.6 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|284161244|ref|YP_003399867.1| - 1.5e-16 60.8 0.4 3.8e-10 39.7 0.0 2.5 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|284161244|ref|YP_003399867.1| - 2.8e-08 33.8 0.0 5.9e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_11 PF13086.1 gi|284161244|ref|YP_003399867.1| - 4.5e-06 26.4 0.0 1.1e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|284161244|ref|YP_003399867.1| - 1.7e-05 24.4 0.0 4.6e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|284161244|ref|YP_003399867.1| - 0.002 17.3 0.0 0.25 10.5 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein Viral_helicase1 PF01443.13 gi|284161244|ref|YP_003399867.1| - 0.0028 17.2 0.0 1.5 8.2 0.0 3.1 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.1 gi|284161244|ref|YP_003399867.1| - 0.0035 17.2 2.0 3.4 7.5 0.0 3.3 3 1 0 3 3 3 2 AAA domain mRNA_triPase PF02940.10 gi|284161244|ref|YP_003399867.1| - 0.0042 16.8 0.1 0.0075 16.0 0.1 1.3 1 0 0 1 1 1 1 mRNA capping enzyme, beta chain AAA_30 PF13604.1 gi|284161244|ref|YP_003399867.1| - 0.0046 16.5 0.0 0.077 12.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284161244|ref|YP_003399867.1| - 0.022 14.7 0.0 0.078 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|284161244|ref|YP_003399867.1| - 0.033 14.3 2.1 0.3 11.2 0.0 2.9 3 1 1 4 4 4 0 AAA domain AAA_24 PF13479.1 gi|284161244|ref|YP_003399867.1| - 0.044 13.3 0.0 0.093 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284161244|ref|YP_003399867.1| - 0.071 13.4 0.9 1.1 9.5 0.0 3.0 3 0 0 3 3 3 0 AAA domain PRD PF00874.15 gi|284161244|ref|YP_003399867.1| - 0.096 12.8 1.8 0.39 10.8 0.2 2.6 3 0 0 3 3 2 0 PRD domain AAA_17 PF13207.1 gi|284161244|ref|YP_003399867.1| - 0.1 13.4 0.0 0.1 13.4 0.0 2.8 3 2 0 3 3 3 0 AAA domain AAA PF00004.24 gi|284161244|ref|YP_003399867.1| - 0.12 12.6 0.2 0.12 12.6 0.1 2.6 3 1 0 3 3 1 0 ATPase family associated with various cellular activities (AAA) RHH_1 PF01402.16 gi|284161247|ref|YP_003399870.1| - 1.2e-05 24.9 0.3 1.6e-05 24.5 0.2 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HTH_6 PF01418.12 gi|284161247|ref|YP_003399870.1| - 0.035 13.8 0.1 0.047 13.4 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family DUF1471 PF07338.8 gi|284161247|ref|YP_003399870.1| - 0.054 13.1 0.1 0.11 12.1 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1471) HTH_5 PF01022.15 gi|284161248|ref|YP_003399871.1| - 6.3e-06 25.7 0.0 1.3e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|284161248|ref|YP_003399871.1| - 3e-05 23.6 0.0 6.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284161248|ref|YP_003399871.1| - 0.00012 21.6 0.0 0.00024 20.6 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284161248|ref|YP_003399871.1| - 0.0017 18.0 0.3 0.0039 16.8 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|284161248|ref|YP_003399871.1| - 0.0024 18.1 0.0 0.0073 16.6 0.0 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain Halogen_Hydrol PF10112.4 gi|284161248|ref|YP_003399871.1| - 0.012 15.0 0.1 0.02 14.2 0.1 1.3 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein PadR PF03551.9 gi|284161248|ref|YP_003399871.1| - 0.031 14.0 0.3 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|284161248|ref|YP_003399871.1| - 0.035 13.5 0.0 0.088 12.2 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|284161248|ref|YP_003399871.1| - 0.035 13.4 0.0 0.13 11.5 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|284161248|ref|YP_003399871.1| - 0.13 11.8 0.1 0.99 9.0 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain NMD3 PF04981.8 gi|284161249|ref|YP_003399872.1| - 1.2e-09 37.6 0.0 1.4e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DUF603 PF04645.7 gi|284161249|ref|YP_003399872.1| - 0.018 15.0 0.1 0.02 14.8 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function, DUF603 Phage_integrase PF00589.17 gi|284161250|ref|YP_003399873.1| - 0.029 14.0 0.3 0.038 13.6 0.2 1.2 1 0 0 1 1 1 0 Phage integrase family RNA_pol_Rpb6 PF01192.17 gi|284161251|ref|YP_003399874.1| - 1.2e-18 66.6 0.1 1.3e-18 66.4 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|284161252|ref|YP_003399875.1| - 4.9e-27 93.7 0.3 5.9e-27 93.4 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Yippee-Mis18 PF03226.9 gi|284161252|ref|YP_003399875.1| - 0.049 13.6 0.2 0.066 13.2 0.1 1.3 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Ribosomal_S9 PF00380.14 gi|284161253|ref|YP_003399876.1| - 8.2e-37 126.1 1.4 9.2e-37 125.9 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 SnAC PF14619.1 gi|284161253|ref|YP_003399876.1| - 0.01 15.9 2.2 0.018 15.2 1.5 1.3 1 0 0 1 1 1 0 Snf2-ATP coupling, chromatin remodelling complex Sigma70_ECF PF07638.6 gi|284161253|ref|YP_003399876.1| - 0.11 12.1 0.6 0.16 11.5 0.4 1.2 1 0 0 1 1 1 0 ECF sigma factor Ribosomal_L13 PF00572.13 gi|284161254|ref|YP_003399877.1| - 3.9e-27 94.8 0.0 5.3e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|284161255|ref|YP_003399878.1| - 2.5e-17 63.4 0.6 3.1e-17 63.1 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Pribosyltran PF00156.22 gi|284161256|ref|YP_003399879.1| - 1.1e-17 63.8 3.3 1e-16 60.7 2.3 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|284161256|ref|YP_003399879.1| - 0.0055 15.9 0.0 0.0077 15.4 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|284161256|ref|YP_003399879.1| - 0.018 14.3 0.1 0.044 13.0 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosyl transferase IlvN PF07991.7 gi|284161257|ref|YP_003399880.1| - 0.069 12.5 0.0 0.095 12.0 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NYN PF01936.13 gi|284161257|ref|YP_003399880.1| - 0.095 12.9 0.1 0.22 11.8 0.0 1.7 2 0 0 2 2 2 0 NYN domain ABC_transp_aux PF09822.4 gi|284161257|ref|YP_003399880.1| - 0.12 11.8 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system IF-2B PF01008.12 gi|284161258|ref|YP_003399881.1| - 9.6e-93 310.2 0.3 1.2e-92 309.8 0.2 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family PALP PF00291.20 gi|284161258|ref|YP_003399881.1| - 0.024 13.9 0.6 2.3 7.3 0.1 2.2 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme DUF4165 PF13752.1 gi|284161258|ref|YP_003399881.1| - 0.065 13.0 0.0 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4165) DEAD PF00270.24 gi|284161259|ref|YP_003399882.1| - 6.3e-35 120.1 0.4 6.5e-33 113.6 0.0 2.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|284161259|ref|YP_003399882.1| - 3.5e-27 95.3 0.0 7.2e-27 94.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.26 gi|284161259|ref|YP_003399882.1| - 8.1e-16 57.6 0.1 6e-15 54.8 0.0 2.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|284161259|ref|YP_003399882.1| - 9.2e-09 35.3 0.0 1.9e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|284161259|ref|YP_003399882.1| - 0.015 15.4 2.3 0.12 12.4 0.8 3.0 2 1 0 2 2 2 0 AAA domain UvrD-helicase PF00580.16 gi|284161259|ref|YP_003399882.1| - 0.059 12.6 0.3 0.51 9.5 0.0 2.1 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain Zot PF05707.7 gi|284161259|ref|YP_003399882.1| - 0.1 12.0 0.0 0.5 9.8 0.0 2.2 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) SNF2_N PF00176.18 gi|284161259|ref|YP_003399882.1| - 0.12 11.1 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|284161259|ref|YP_003399882.1| - 0.15 11.7 0.0 2.1 8.1 0.0 2.8 2 0 0 2 2 2 0 Part of AAA domain TP_methylase PF00590.15 gi|284161260|ref|YP_003399883.1| - 3.6e-54 183.6 0.2 5e-54 183.1 0.0 1.3 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases NAD_kinase PF01513.16 gi|284161260|ref|YP_003399883.1| - 0.017 13.9 0.0 0.021 13.5 0.0 1.2 1 0 0 1 1 1 0 ATP-NAD kinase DUF2153 PF09921.4 gi|284161260|ref|YP_003399883.1| - 0.11 12.1 0.1 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2153) NIR_SIR PF01077.17 gi|284161261|ref|YP_003399884.1| - 1e-48 164.6 0.2 1.4e-48 164.1 0.1 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|284161261|ref|YP_003399884.1| - 7.8e-09 35.0 0.0 2.4e-08 33.4 0.0 1.7 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.2 gi|284161261|ref|YP_003399884.1| - 0.0013 19.0 0.6 0.0013 19.0 0.4 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284161261|ref|YP_003399884.1| - 0.0026 17.5 0.8 0.0026 17.5 0.6 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284161261|ref|YP_003399884.1| - 0.014 15.2 9.4 0.88 9.4 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284161261|ref|YP_003399884.1| - 0.045 14.0 0.7 0.045 14.0 0.5 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284161261|ref|YP_003399884.1| - 0.13 12.6 0.2 0.13 12.6 0.1 3.3 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|284161261|ref|YP_003399884.1| - 0.23 12.0 11.9 0.39 11.3 0.0 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|284161261|ref|YP_003399884.1| - 3.2 7.8 8.4 9.5 6.3 3.4 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain NIR_SIR PF01077.17 gi|284161262|ref|YP_003399885.1| - 8.7e-39 132.3 0.0 1.2e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|284161262|ref|YP_003399885.1| - 1.2e-11 44.0 0.0 2.7e-11 42.8 0.0 1.7 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.22 gi|284161262|ref|YP_003399885.1| - 2e-05 23.9 2.6 2e-05 23.9 1.8 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284161262|ref|YP_003399885.1| - 6.7e-05 23.1 11.1 0.00032 21.0 7.7 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|284161262|ref|YP_003399885.1| - 0.0003 20.6 1.4 0.0003 20.6 1.0 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284161262|ref|YP_003399885.1| - 0.00077 19.2 2.4 0.00077 19.2 1.6 2.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284161262|ref|YP_003399885.1| - 0.00083 19.8 0.0 0.00083 19.8 0.0 2.6 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|284161262|ref|YP_003399885.1| - 0.001 19.3 5.8 0.001 19.3 4.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284161262|ref|YP_003399885.1| - 0.012 16.0 0.3 0.012 16.0 0.2 2.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|284161262|ref|YP_003399885.1| - 0.014 15.2 2.3 0.014 15.2 1.6 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|284161262|ref|YP_003399885.1| - 0.46 10.3 7.5 4.9 7.0 1.8 2.8 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.2 gi|284161262|ref|YP_003399885.1| - 0.86 9.5 11.2 0.3 11.0 1.6 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284161262|ref|YP_003399885.1| - 2.4 8.2 13.4 0.043 13.8 2.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain DsrD PF08679.6 gi|284161263|ref|YP_003399886.1| - 5.2e-24 84.0 0.8 6.4e-24 83.7 0.5 1.1 1 0 0 1 1 1 1 Dissimilatory sulfite reductase D (DsrD) HTH_Crp_2 PF13545.1 gi|284161263|ref|YP_003399886.1| - 0.016 14.9 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2042 PF09743.4 gi|284161263|ref|YP_003399886.1| - 0.031 13.5 0.1 0.032 13.5 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) TrmB PF01978.14 gi|284161263|ref|YP_003399886.1| - 0.034 13.8 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF387 PF04079.11 gi|284161263|ref|YP_003399886.1| - 0.074 12.4 0.1 0.14 11.5 0.0 1.4 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) Phage_capsid PF05065.8 gi|284161263|ref|YP_003399886.1| - 0.11 11.6 0.2 0.13 11.4 0.1 1.0 1 0 0 1 1 1 0 Phage capsid family DUF947 PF06102.7 gi|284161263|ref|YP_003399886.1| - 0.18 11.6 3.5 0.2 11.4 2.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF947) Fer4 PF00037.22 gi|284161264|ref|YP_003399887.1| - 1.6e-13 49.6 21.6 3.7e-07 29.4 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284161264|ref|YP_003399887.1| - 2e-11 44.0 28.8 1.3e-07 31.8 12.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284161264|ref|YP_003399887.1| - 3.3e-09 36.4 16.7 4e-09 36.1 11.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284161264|ref|YP_003399887.1| - 6.8e-08 32.6 16.1 9.4e-08 32.2 11.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284161264|ref|YP_003399887.1| - 2.5e-07 30.2 19.0 7.5e-07 28.7 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284161264|ref|YP_003399887.1| - 4.3e-06 26.4 14.9 7.1e-06 25.7 10.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284161264|ref|YP_003399887.1| - 1.5e-05 24.6 20.2 0.00034 20.3 3.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284161264|ref|YP_003399887.1| - 1.7e-05 25.4 13.1 0.013 16.1 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|284161264|ref|YP_003399887.1| - 1.9e-05 24.6 21.0 0.0011 19.1 1.2 2.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|284161264|ref|YP_003399887.1| - 7.7e-05 23.1 16.7 0.00093 19.7 11.5 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|284161264|ref|YP_003399887.1| - 0.00047 20.5 25.4 0.089 13.3 7.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284161264|ref|YP_003399887.1| - 0.0037 17.6 14.0 0.088 13.2 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284161264|ref|YP_003399887.1| - 0.0063 16.5 16.9 0.024 14.6 11.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284161264|ref|YP_003399887.1| - 0.0064 16.8 17.6 0.1 12.9 12.2 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|284161264|ref|YP_003399887.1| - 0.0069 16.1 7.7 0.0086 15.8 5.3 1.1 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_17 PF13534.1 gi|284161264|ref|YP_003399887.1| - 0.031 14.6 17.5 0.26 11.6 1.3 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|284161264|ref|YP_003399887.1| - 0.033 14.0 8.5 0.66 9.8 6.3 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain HTH_3 PF01381.17 gi|284161265|ref|YP_003399888.1| - 7.6e-10 38.4 0.1 2.5e-09 36.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|284161265|ref|YP_003399888.1| - 1.3e-08 34.7 0.0 3.4e-08 33.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|284161265|ref|YP_003399888.1| - 5.5e-07 29.6 0.0 1.1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284161265|ref|YP_003399888.1| - 0.006 15.9 0.0 0.012 14.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding NUMOD1 PF07453.8 gi|284161265|ref|YP_003399888.1| - 0.01 15.6 0.1 0.049 13.5 0.0 2.1 2 0 0 2 2 2 1 NUMOD1 domain DUF4498 PF14926.1 gi|284161265|ref|YP_003399888.1| - 0.043 12.9 0.2 0.059 12.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4498) Phage_CI_repr PF07022.8 gi|284161265|ref|YP_003399888.1| - 0.043 13.8 0.0 0.069 13.2 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_37 PF13744.1 gi|284161265|ref|YP_003399888.1| - 0.064 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|284161265|ref|YP_003399888.1| - 0.081 12.4 0.0 0.24 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|284161265|ref|YP_003399888.1| - 0.11 12.2 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.7 gi|284161265|ref|YP_003399888.1| - 0.13 11.7 0.0 0.35 10.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|284161265|ref|YP_003399888.1| - 0.13 11.8 0.1 0.44 10.1 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain ACP_syn_III_C PF08541.5 gi|284161266|ref|YP_003399889.1| - 4e-12 45.9 0.0 1.3e-11 44.3 0.0 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|284161266|ref|YP_003399889.1| - 5.4e-06 26.0 0.1 1.3e-05 24.7 0.0 1.6 1 1 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|284161266|ref|YP_003399889.1| - 3.5e-05 23.4 0.1 5.3e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.5 gi|284161266|ref|YP_003399889.1| - 3.5e-05 23.3 0.4 3.5e-05 23.3 0.3 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|284161266|ref|YP_003399889.1| - 0.0017 17.4 0.0 0.0026 16.7 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|284161267|ref|YP_003399890.1| - 3e-11 42.8 0.4 1.1e-10 40.9 0.1 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|284161267|ref|YP_003399890.1| - 2.1e-07 30.2 1.7 5.6e-07 28.8 0.2 2.0 2 0 0 2 2 2 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|284161267|ref|YP_003399890.1| - 0.0096 15.7 7.5 0.28 11.0 0.1 3.7 4 0 0 4 4 4 2 Beta-ketoacyl synthase, C-terminal domain Indigoidine_A PF04227.7 gi|284161267|ref|YP_003399890.1| - 0.023 13.9 0.0 0.05 12.8 0.0 1.5 1 0 0 1 1 1 0 Indigoidine synthase A like protein PCP PF02429.10 gi|284161267|ref|YP_003399890.1| - 0.038 14.1 1.7 0.043 13.9 0.1 1.9 2 0 0 2 2 2 0 Peridinin-chlorophyll A binding protein ketoacyl-synt PF00109.21 gi|284161267|ref|YP_003399890.1| - 0.13 11.7 11.2 0.07 12.5 3.4 2.7 2 1 0 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain DUF35 PF01796.12 gi|284161268|ref|YP_003399891.1| - 2.8e-17 62.7 0.0 3.5e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|284161268|ref|YP_003399891.1| - 2.3e-10 40.0 0.9 3.6e-10 39.4 0.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_3 PF13920.1 gi|284161268|ref|YP_003399891.1| - 0.018 14.7 0.7 0.028 14.1 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|284161268|ref|YP_003399891.1| - 0.061 13.1 0.8 0.1 12.4 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|284161268|ref|YP_003399891.1| - 0.063 12.4 0.6 6.1 6.1 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Amidohydro_1 PF01979.15 gi|284161269|ref|YP_003399892.1| - 8.8e-62 209.6 0.1 1.2e-61 209.2 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|284161269|ref|YP_003399892.1| - 1.9e-10 41.2 0.0 1.3e-09 38.4 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|284161269|ref|YP_003399892.1| - 8.7e-10 38.3 0.3 6.8e-07 28.8 0.0 2.9 3 0 0 3 3 3 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|284161269|ref|YP_003399892.1| - 1.8e-09 37.2 0.0 8.2e-09 35.1 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|284161269|ref|YP_003399892.1| - 0.078 11.8 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase TrkA_N PF02254.13 gi|284161270|ref|YP_003399893.1| - 1.3e-52 176.7 9.5 7.5e-27 93.6 0.2 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|284161270|ref|YP_003399893.1| - 5.1e-34 115.6 9.6 4.8e-19 67.7 0.9 3.6 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|284161270|ref|YP_003399893.1| - 5.8e-12 45.7 3.8 1.2e-05 25.4 0.1 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|284161270|ref|YP_003399893.1| - 4.8e-08 32.5 2.0 7.8e-05 22.1 0.1 2.8 2 1 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.15 gi|284161270|ref|YP_003399893.1| - 2.1e-07 31.1 1.6 0.00081 19.4 0.0 2.5 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|284161270|ref|YP_003399893.1| - 2.7e-07 30.5 1.5 0.00038 20.3 0.1 2.9 3 0 0 3 3 3 2 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|284161270|ref|YP_003399893.1| - 1.2e-06 28.3 1.4 0.018 14.6 0.0 2.8 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|284161270|ref|YP_003399893.1| - 2.3e-06 27.4 0.0 0.018 14.8 0.0 2.5 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|284161270|ref|YP_003399893.1| - 3.4e-06 27.4 0.1 0.0066 16.7 0.0 2.3 2 0 0 2 2 2 2 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|284161270|ref|YP_003399893.1| - 9.2e-06 24.8 2.5 0.0038 16.2 0.1 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase ApbA PF02558.11 gi|284161270|ref|YP_003399893.1| - 1.6e-05 24.4 0.3 0.025 13.9 0.0 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA DUF1188 PF06690.6 gi|284161270|ref|YP_003399893.1| - 2.6e-05 23.5 2.5 0.0068 15.5 0.2 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF1188) Methyltransf_31 PF13847.1 gi|284161270|ref|YP_003399893.1| - 6.1e-05 22.6 2.3 0.0035 16.9 0.1 2.6 2 1 0 2 2 2 1 Methyltransferase domain F420_oxidored PF03807.12 gi|284161270|ref|YP_003399893.1| - 0.00016 22.0 4.4 0.11 12.8 0.3 3.1 3 0 0 3 3 3 2 NADP oxidoreductase coenzyme F420-dependent Methyltransf_26 PF13659.1 gi|284161270|ref|YP_003399893.1| - 0.00022 21.2 0.0 0.8 9.7 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain NmrA PF05368.8 gi|284161270|ref|YP_003399893.1| - 0.00025 20.3 6.9 0.019 14.2 0.0 2.7 3 0 0 3 3 3 2 NmrA-like family Methyltransf_25 PF13649.1 gi|284161270|ref|YP_003399893.1| - 0.00045 20.5 0.1 1.2 9.5 0.0 2.8 2 1 0 2 2 2 2 Methyltransferase domain Gp_dh_N PF00044.19 gi|284161270|ref|YP_003399893.1| - 0.00095 19.1 1.1 0.38 10.6 0.1 2.5 2 0 0 2 2 2 2 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ThiF PF00899.16 gi|284161270|ref|YP_003399893.1| - 0.001 18.8 2.9 0.36 10.6 0.1 3.1 2 1 0 2 2 2 1 ThiF family 2-Hacid_dh_C PF02826.14 gi|284161270|ref|YP_003399893.1| - 0.0012 18.0 0.2 0.097 11.8 0.0 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|284161270|ref|YP_003399893.1| - 0.0074 16.1 1.5 1.5 8.6 0.0 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase MTS PF05175.9 gi|284161270|ref|YP_003399893.1| - 0.033 13.5 3.8 1.8 7.9 0.2 2.8 3 0 0 3 3 3 0 Methyltransferase small domain Pyr_redox PF00070.22 gi|284161270|ref|YP_003399893.1| - 0.055 13.8 2.8 3.3 8.1 0.1 3.3 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Methyltransf_16 PF10294.4 gi|284161270|ref|YP_003399893.1| - 0.056 12.8 5.1 3.1 7.2 0.1 2.9 3 0 0 3 3 3 0 Putative methyltransferase ELFV_dehydrog PF00208.16 gi|284161270|ref|YP_003399893.1| - 0.066 12.7 1.0 5.3 6.5 0.1 2.3 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TatC PF00902.13 gi|284161271|ref|YP_003399894.1| - 2.4e-50 170.9 22.6 3e-50 170.5 15.7 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) DUF3792 PF12670.2 gi|284161272|ref|YP_003399895.1| - 4.4 7.2 11.2 16 5.3 2.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3792) FUSC_2 PF13515.1 gi|284161272|ref|YP_003399895.1| - 6.4 6.7 10.1 11 5.9 5.4 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein-like FeoB_N PF02421.13 gi|284161273|ref|YP_003399896.1| - 1.5e-65 219.2 1.2 2.2e-65 218.6 0.2 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B Gate PF07670.9 gi|284161273|ref|YP_003399896.1| - 1.2e-38 131.3 24.8 8.2e-26 90.0 4.3 3.0 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|284161273|ref|YP_003399896.1| - 4.6e-19 68.4 0.1 8.4e-19 67.6 0.1 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|284161273|ref|YP_003399896.1| - 6.5e-16 57.4 1.1 6.5e-16 57.4 0.8 3.7 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus Miro PF08477.8 gi|284161273|ref|YP_003399896.1| - 4.9e-06 27.0 0.0 9.7e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|284161273|ref|YP_003399896.1| - 5.3e-06 25.9 0.1 0.0018 17.6 0.1 2.4 2 0 0 2 2 2 2 Ras family AIG1 PF04548.11 gi|284161273|ref|YP_003399896.1| - 2e-05 23.7 0.0 3.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.18 gi|284161273|ref|YP_003399896.1| - 3.2e-05 23.8 0.6 0.27 11.0 0.0 2.4 2 0 0 2 2 2 2 Dynamin family SRPRB PF09439.5 gi|284161273|ref|YP_003399896.1| - 0.0031 16.7 0.0 0.0049 16.1 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit PduV-EutP PF10662.4 gi|284161273|ref|YP_003399896.1| - 0.14 11.6 0.0 0.32 10.4 0.0 1.7 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ArgK PF03308.11 gi|284161273|ref|YP_003399896.1| - 1.7 7.3 7.2 0.41 9.3 0.1 2.6 3 0 0 3 3 3 0 ArgK protein DUF4013 PF13197.1 gi|284161274|ref|YP_003399897.1| - 0.46 9.7 18.5 0.54 9.5 12.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) Na_H_antiporter PF03553.9 gi|284161275|ref|YP_003399898.1| - 0.035 13.1 0.9 0.057 12.4 0.6 1.4 1 1 0 1 1 1 0 Na+/H+ antiporter family SHR3_chaperone PF08229.6 gi|284161275|ref|YP_003399898.1| - 0.12 11.3 0.1 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 ER membrane protein SH3 DUF3487 PF11990.3 gi|284161275|ref|YP_003399898.1| - 0.17 11.2 1.0 0.25 10.7 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3487) MatC_N PF07158.6 gi|284161275|ref|YP_003399898.1| - 0.74 9.6 4.4 0.87 9.3 0.3 2.1 1 1 1 2 2 2 0 Dicarboxylate carrier protein MatC N-terminus DUF350 PF03994.9 gi|284161275|ref|YP_003399898.1| - 6.9 6.4 10.5 10 5.9 0.0 2.6 3 0 0 3 3 3 0 Domain of Unknown Function (DUF350) FeoA PF04023.9 gi|284161276|ref|YP_003399899.1| - 2.2e-16 59.5 0.8 2.4e-16 59.4 0.5 1.0 1 0 0 1 1 1 1 FeoA domain Flavi_DEAD PF07652.9 gi|284161276|ref|YP_003399899.1| - 0.11 12.2 0.0 0.12 12.0 0.0 1.0 1 0 0 1 1 1 0 Flavivirus DEAD domain Fe_dep_repress PF01325.14 gi|284161277|ref|YP_003399900.1| - 7.2e-23 80.3 0.0 1.2e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|284161277|ref|YP_003399900.1| - 6.1e-19 67.4 0.1 1.2e-18 66.5 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|284161277|ref|YP_003399900.1| - 3.6e-09 36.1 0.0 6.2e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284161277|ref|YP_003399900.1| - 3.1e-06 26.7 0.0 6.8e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|284161277|ref|YP_003399900.1| - 6.5e-06 26.3 0.0 1.2e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|284161277|ref|YP_003399900.1| - 1.7e-05 24.4 0.1 0.00036 20.1 0.0 2.2 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284161277|ref|YP_003399900.1| - 2.2e-05 23.7 0.0 8.6e-05 21.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284161277|ref|YP_003399900.1| - 0.0002 20.9 0.0 0.00042 19.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|284161277|ref|YP_003399900.1| - 0.0003 20.5 0.1 0.00053 19.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|284161277|ref|YP_003399900.1| - 0.00043 20.3 0.0 0.001 19.1 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator IF2_N PF04760.10 gi|284161277|ref|YP_003399900.1| - 0.00054 19.5 0.1 0.014 15.0 0.0 2.6 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region HTH_Crp_2 PF13545.1 gi|284161277|ref|YP_003399900.1| - 0.00064 19.4 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_17 PF12728.2 gi|284161277|ref|YP_003399900.1| - 0.00089 19.4 0.8 0.073 13.3 0.1 3.2 2 1 1 3 3 3 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|284161277|ref|YP_003399900.1| - 0.0011 18.5 0.0 0.0023 17.4 0.0 1.6 1 0 0 1 1 1 1 LexA DNA binding domain HTH_DeoR PF08220.7 gi|284161277|ref|YP_003399900.1| - 0.0014 18.1 0.0 0.0028 17.1 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain FeoC PF09012.5 gi|284161277|ref|YP_003399900.1| - 0.0018 17.9 0.0 0.0039 16.8 0.0 1.6 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|284161277|ref|YP_003399900.1| - 0.0018 17.8 0.0 0.0038 16.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain EAP30 PF04157.11 gi|284161277|ref|YP_003399900.1| - 0.0019 17.3 0.0 0.0061 15.7 0.0 1.7 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_3 PF01381.17 gi|284161277|ref|YP_003399900.1| - 0.0024 17.6 0.0 0.011 15.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_IclR PF09339.5 gi|284161277|ref|YP_003399900.1| - 0.0024 17.3 0.0 0.0046 16.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|284161277|ref|YP_003399900.1| - 0.0043 16.8 0.0 0.01 15.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|284161277|ref|YP_003399900.1| - 0.005 16.8 0.1 0.02 14.9 0.0 2.0 3 0 0 3 3 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|284161277|ref|YP_003399900.1| - 0.0061 16.5 0.0 0.018 15.0 0.0 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|284161277|ref|YP_003399900.1| - 0.0071 15.7 0.0 0.018 14.4 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|284161277|ref|YP_003399900.1| - 0.0093 15.4 0.0 0.022 14.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|284161277|ref|YP_003399900.1| - 0.013 15.0 0.0 0.036 13.6 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain HTH_1 PF00126.22 gi|284161277|ref|YP_003399900.1| - 0.016 14.9 0.0 0.11 12.2 0.0 2.4 2 1 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|284161277|ref|YP_003399900.1| - 0.019 14.6 0.1 0.097 12.3 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain TetR_N PF00440.18 gi|284161277|ref|YP_003399900.1| - 0.02 14.5 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Topoisom_bac PF01131.15 gi|284161277|ref|YP_003399900.1| - 0.031 13.0 0.1 0.049 12.4 0.0 1.2 1 0 0 1 1 1 0 DNA topoisomerase HTH_37 PF13744.1 gi|284161277|ref|YP_003399900.1| - 0.038 13.8 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|284161277|ref|YP_003399900.1| - 0.057 13.6 0.0 0.43 10.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.14 gi|284161277|ref|YP_003399900.1| - 0.062 12.6 0.0 0.15 11.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family GntR PF00392.16 gi|284161277|ref|YP_003399900.1| - 0.084 12.3 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|284161277|ref|YP_003399900.1| - 0.088 12.9 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix LacI PF00356.16 gi|284161277|ref|YP_003399900.1| - 0.091 12.3 0.0 0.29 10.7 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Terminase_5 PF06056.7 gi|284161277|ref|YP_003399900.1| - 0.095 12.2 0.0 0.22 11.1 0.0 1.6 2 0 0 2 2 1 0 Putative ATPase subunit of terminase (gpP-like) Antimicrobial_7 PF08102.6 gi|284161277|ref|YP_003399900.1| - 0.097 12.6 0.2 0.53 10.3 0.0 2.2 2 0 0 2 2 2 0 Scorpion antimicrobial peptide Phage_terminase PF10668.4 gi|284161277|ref|YP_003399900.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Phage terminase small subunit DUF2893 PF11459.3 gi|284161277|ref|YP_003399900.1| - 0.12 12.1 0.0 0.54 10.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknwon function (DUF2893) FeoA PF04023.9 gi|284161278|ref|YP_003399901.1| - 2.4e-18 65.8 2.2 2.6e-18 65.7 1.5 1.0 1 0 0 1 1 1 1 FeoA domain Peptidase_M42 PF05343.9 gi|284161279|ref|YP_003399902.1| - 6.2e-111 369.8 2.1 7.2e-111 369.6 1.5 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|284161279|ref|YP_003399902.1| - 2.4e-12 46.7 0.1 3.6e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|284161279|ref|YP_003399902.1| - 0.00067 18.2 0.3 0.0073 14.8 0.0 2.0 1 1 0 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) PsiE PF06146.7 gi|284161280|ref|YP_003399903.1| - 5.8e-09 36.0 9.0 5.8e-09 36.0 6.2 2.0 2 0 0 2 2 2 1 Phosphate-starvation-inducible E FTR_C PF02741.10 gi|284161281|ref|YP_003399904.1| - 1e-60 203.8 0.0 1.4e-60 203.4 0.0 1.2 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|284161281|ref|YP_003399904.1| - 4.7e-45 152.8 0.0 6.8e-45 152.3 0.0 1.2 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase TP_methylase PF00590.15 gi|284161282|ref|YP_003399905.1| - 1.9e-18 66.9 0.0 2.4e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MMR_HSR1 PF01926.18 gi|284161283|ref|YP_003399906.1| - 2.8e-23 82.0 0.0 5.6e-23 81.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|284161283|ref|YP_003399906.1| - 8.5e-23 79.9 0.0 1.6e-22 79.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|284161283|ref|YP_003399906.1| - 2.7e-15 55.9 0.1 3e-14 52.5 0.0 2.2 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|284161283|ref|YP_003399906.1| - 1.6e-06 28.0 1.4 0.014 15.2 0.0 2.8 3 0 0 3 3 3 2 Dynamin family Miro PF08477.8 gi|284161283|ref|YP_003399906.1| - 0.00031 21.2 0.6 0.0016 18.9 0.0 2.4 3 0 0 3 3 2 1 Miro-like protein Arf PF00025.16 gi|284161283|ref|YP_003399906.1| - 0.00046 19.4 0.4 0.0018 17.5 0.0 2.0 2 2 0 2 2 2 1 ADP-ribosylation factor family AIG1 PF04548.11 gi|284161283|ref|YP_003399906.1| - 0.0039 16.3 0.1 0.008 15.2 0.0 1.5 2 0 0 2 2 2 1 AIG1 family GTP_EFTU PF00009.22 gi|284161283|ref|YP_003399906.1| - 0.008 15.6 0.6 2.5 7.4 0.1 3.7 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|284161283|ref|YP_003399906.1| - 0.012 14.8 0.0 0.025 13.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|284161283|ref|YP_003399906.1| - 0.02 14.3 0.6 1.8 7.9 0.0 2.9 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain SspH PF08141.7 gi|284161283|ref|YP_003399906.1| - 0.025 14.5 0.1 0.096 12.7 0.0 2.1 2 0 0 2 2 1 0 Small acid-soluble spore protein H family AAA_16 PF13191.1 gi|284161283|ref|YP_003399906.1| - 0.027 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|284161283|ref|YP_003399906.1| - 0.042 13.3 0.1 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRPRB PF09439.5 gi|284161283|ref|YP_003399906.1| - 0.047 12.9 0.5 0.083 12.0 0.0 1.6 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ArgK PF03308.11 gi|284161283|ref|YP_003399906.1| - 0.064 12.0 0.0 0.21 10.3 0.0 1.9 2 0 0 2 2 2 0 ArgK protein AAA_18 PF13238.1 gi|284161283|ref|YP_003399906.1| - 0.068 13.4 0.2 0.27 11.5 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|284161283|ref|YP_003399906.1| - 0.076 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|284161283|ref|YP_003399906.1| - 0.08 12.4 0.4 21 4.5 0.0 3.1 3 1 1 4 4 4 0 Conserved hypothetical ATP binding protein G-gamma PF00631.17 gi|284161283|ref|YP_003399906.1| - 0.18 11.5 2.9 0.57 9.9 0.3 2.5 2 0 0 2 2 2 0 GGL domain DUF465 PF04325.8 gi|284161283|ref|YP_003399906.1| - 5.4 6.7 11.5 3.3 7.5 4.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF465) Nitroreductase PF00881.19 gi|284161284|ref|YP_003399907.1| - 1.6e-41 141.9 0.0 1.8e-41 141.6 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF1403 PF07183.6 gi|284161284|ref|YP_003399907.1| - 0.082 12.2 0.1 0.099 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1403) tRNA-Thr_ED PF08915.6 gi|284161285|ref|YP_003399908.1| - 7.5e-55 184.6 0.2 1.5e-54 183.7 0.1 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|284161285|ref|YP_003399908.1| - 6e-27 94.3 2.7 1.2e-26 93.2 1.4 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|284161285|ref|YP_003399908.1| - 4.3e-23 81.0 3.2 5.6e-23 80.6 0.9 2.2 2 0 0 2 2 2 1 Anticodon binding domain Glycoamylase PF10091.4 gi|284161285|ref|YP_003399908.1| - 0.0025 16.9 0.0 0.0042 16.1 0.0 1.2 1 0 0 1 1 1 1 Putative glucoamylase FDC-SP PF15215.1 gi|284161285|ref|YP_003399908.1| - 0.011 16.0 0.0 0.035 14.4 0.0 1.9 1 0 0 1 1 1 0 Follicular dendritic cell secreted peptide DUF2884 PF11101.3 gi|284161285|ref|YP_003399908.1| - 0.024 14.0 0.0 0.06 12.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) ABC_tran PF00005.22 gi|284161287|ref|YP_003399910.1| - 2.3e-38 131.5 0.0 5.2e-18 65.6 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|284161287|ref|YP_003399910.1| - 1.2e-16 61.5 6.7 8.8e-05 22.6 0.1 4.2 2 2 2 4 4 4 4 AAA domain RLI PF04068.10 gi|284161287|ref|YP_003399910.1| - 8.3e-14 50.8 4.7 2.2e-13 49.5 3.3 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|284161287|ref|YP_003399910.1| - 2.2e-12 46.6 7.3 5.9e-06 25.6 0.9 4.1 2 2 1 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.22 gi|284161287|ref|YP_003399910.1| - 3.9e-08 32.5 3.7 3.9e-08 32.5 2.5 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284161287|ref|YP_003399910.1| - 1.1e-07 31.4 12.3 1.3e-05 24.8 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain AAA PF00004.24 gi|284161287|ref|YP_003399910.1| - 3.9e-05 23.8 0.1 0.0053 16.9 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|284161287|ref|YP_003399910.1| - 0.00013 21.7 2.0 0.047 13.3 0.2 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B Fer4_7 PF12838.2 gi|284161287|ref|YP_003399910.1| - 0.00016 22.0 11.5 0.0011 19.3 8.4 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain AAA_29 PF13555.1 gi|284161287|ref|YP_003399910.1| - 0.00018 20.9 0.1 0.41 10.2 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_2 PF12797.2 gi|284161287|ref|YP_003399910.1| - 0.00024 20.8 13.0 0.0011 18.7 2.0 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284161287|ref|YP_003399910.1| - 0.00048 19.9 11.1 0.00083 19.1 7.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_17 PF13207.1 gi|284161287|ref|YP_003399910.1| - 0.00057 20.7 4.9 0.58 10.9 0.2 3.1 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|284161287|ref|YP_003399910.1| - 0.00059 19.7 0.2 1.4 8.7 0.0 3.0 2 1 0 2 2 2 2 AAA domain Fer4_10 PF13237.1 gi|284161287|ref|YP_003399910.1| - 0.00072 19.3 13.0 0.0023 17.7 9.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_18 PF13238.1 gi|284161287|ref|YP_003399910.1| - 0.00074 19.8 4.0 0.94 9.7 0.0 3.2 2 1 0 2 2 2 1 AAA domain Fer4_9 PF13187.1 gi|284161287|ref|YP_003399910.1| - 0.001 19.2 12.1 0.0024 18.1 8.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Miro PF08477.8 gi|284161287|ref|YP_003399910.1| - 0.0012 19.3 0.2 0.29 11.6 0.1 2.4 2 0 0 2 2 2 1 Miro-like protein AAA_22 PF13401.1 gi|284161287|ref|YP_003399910.1| - 0.0014 18.8 0.7 0.73 9.9 0.5 2.9 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|284161287|ref|YP_003399910.1| - 0.0016 18.2 0.0 2.5 8.0 0.0 3.6 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.17 gi|284161287|ref|YP_003399910.1| - 0.0032 17.6 0.1 1.3 9.2 0.0 2.7 3 0 0 3 3 2 1 RNA helicase AAA_23 PF13476.1 gi|284161287|ref|YP_003399910.1| - 0.0062 16.8 0.0 2.2 8.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284161287|ref|YP_003399910.1| - 0.0089 15.4 0.5 8.4 5.7 0.1 3.2 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.1 gi|284161287|ref|YP_003399910.1| - 0.0098 15.4 0.2 3 7.3 0.1 2.4 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|284161287|ref|YP_003399910.1| - 0.021 14.2 0.4 1.9 7.8 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|284161287|ref|YP_003399910.1| - 0.029 13.1 0.8 5.3 5.7 0.0 2.2 2 0 0 2 2 2 0 ArgK protein AAA_19 PF13245.1 gi|284161287|ref|YP_003399910.1| - 0.034 13.9 0.9 1.2 8.9 0.3 3.0 3 0 0 3 3 2 0 Part of AAA domain Fer4_3 PF12798.2 gi|284161287|ref|YP_003399910.1| - 0.035 14.6 4.9 0.035 14.6 3.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain UPF0079 PF02367.12 gi|284161287|ref|YP_003399910.1| - 0.074 12.6 2.1 3.1 7.4 0.1 2.7 3 0 0 3 3 2 0 Uncharacterised P-loop hydrolase UPF0079 Fer4_4 PF12800.2 gi|284161287|ref|YP_003399910.1| - 0.08 13.3 13.3 0.066 13.5 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain T2SE PF00437.15 gi|284161287|ref|YP_003399910.1| - 0.081 11.8 0.1 6.6 5.5 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|284161287|ref|YP_003399910.1| - 0.087 12.7 2.3 16 5.3 0.5 3.3 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|284161287|ref|YP_003399910.1| - 0.088 11.9 0.1 9.9 5.3 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function, DUF258 VirE PF05272.6 gi|284161287|ref|YP_003399910.1| - 0.092 12.2 0.0 8.3 5.8 0.0 2.4 2 0 0 2 2 2 0 Virulence-associated protein E Fer4_15 PF13459.1 gi|284161287|ref|YP_003399910.1| - 0.12 12.9 12.1 30 5.2 8.4 2.8 1 1 0 1 1 1 0 4Fe-4S single cluster domain AAA_32 PF13654.1 gi|284161287|ref|YP_003399910.1| - 0.13 10.9 0.2 0.33 9.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain Fer4_8 PF13183.1 gi|284161287|ref|YP_003399910.1| - 0.13 12.2 8.3 0.31 11.0 5.7 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Rad17 PF03215.10 gi|284161287|ref|YP_003399910.1| - 0.14 10.8 0.1 1.2 7.7 0.0 2.0 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|284161287|ref|YP_003399910.1| - 0.18 11.7 0.5 10 6.0 0.2 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|284161287|ref|YP_003399910.1| - 0.19 10.7 0.1 3.6 6.5 0.0 2.6 3 0 0 3 3 3 0 AAA ATPase domain NTPase_1 PF03266.10 gi|284161287|ref|YP_003399910.1| - 0.74 9.5 4.1 15 5.2 0.3 2.8 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.1 gi|284161287|ref|YP_003399910.1| - 1.6 8.7 3.3 11 5.8 0.2 2.9 2 2 0 2 2 2 0 AAA ATPase domain Fer4_18 PF13746.1 gi|284161287|ref|YP_003399910.1| - 2.6 8.5 10.3 0.51 10.8 3.8 2.0 1 1 1 2 2 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161287|ref|YP_003399910.1| - 3.1 8.6 13.1 0.07 13.8 1.3 2.4 1 1 2 3 3 2 0 4Fe-4S double cluster binding domain NfeD PF01957.13 gi|284161288|ref|YP_003399911.1| - 2.7e-32 111.9 6.0 2.7e-32 111.9 4.2 2.7 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|284161288|ref|YP_003399911.1| - 4.2e-08 33.0 0.6 9.2e-08 31.9 0.4 1.5 1 1 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|284161288|ref|YP_003399911.1| - 0.087 11.5 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 Serine dehydrogenase proteinase TRIQK PF15168.1 gi|284161288|ref|YP_003399911.1| - 5.6 6.9 5.1 29 4.6 0.3 2.6 1 1 1 2 2 2 0 Triple QxxK/R motif-containing protein family DUF3043 PF11241.3 gi|284161288|ref|YP_003399911.1| - 6.2 6.3 6.0 3.3 7.2 2.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3043) DUF357 PF04010.8 gi|284161289|ref|YP_003399912.1| - 1.3e-20 72.8 0.0 1.5e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) AAA_12 PF13087.1 gi|284161290|ref|YP_003399913.1| - 7.8e-63 211.4 0.2 1.3e-62 210.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|284161290|ref|YP_003399913.1| - 6.5e-51 173.1 0.2 9.7e-49 166.0 0.2 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|284161290|ref|YP_003399913.1| - 8.3e-14 51.6 0.1 1.3e-09 37.8 0.0 3.6 4 0 0 4 4 4 2 AAA domain AAA_19 PF13245.1 gi|284161290|ref|YP_003399913.1| - 4.7e-11 42.2 0.7 4.4e-10 39.1 0.1 2.6 3 0 0 3 3 3 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|284161290|ref|YP_003399913.1| - 2.5e-08 33.7 0.0 0.00019 21.0 0.0 3.2 2 1 0 2 2 2 1 Viral (Superfamily 1) RNA helicase PIF1 PF05970.9 gi|284161290|ref|YP_003399913.1| - 1.3e-05 24.3 0.0 0.0042 16.0 0.0 2.2 2 0 0 2 2 2 2 PIF1-like helicase AAA_16 PF13191.1 gi|284161290|ref|YP_003399913.1| - 0.001 19.1 0.7 0.0042 17.0 0.4 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|284161290|ref|YP_003399913.1| - 0.0015 18.7 1.6 0.017 15.2 0.5 3.0 2 1 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|284161290|ref|YP_003399913.1| - 0.0044 16.2 0.0 0.64 9.2 0.0 2.6 2 0 0 2 2 2 1 PhoH-like protein UvrD-helicase PF00580.16 gi|284161290|ref|YP_003399913.1| - 0.0057 15.9 2.8 0.083 12.1 1.7 2.7 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain Helicase_RecD PF05127.9 gi|284161290|ref|YP_003399913.1| - 0.0081 15.8 2.7 0.064 12.8 0.1 2.6 1 1 1 2 2 2 1 Helicase ResIII PF04851.10 gi|284161290|ref|YP_003399913.1| - 0.012 15.4 0.0 0.036 13.9 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.4 gi|284161290|ref|YP_003399913.1| - 0.013 14.1 0.2 0.037 12.6 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain UvrD_C_2 PF13538.1 gi|284161290|ref|YP_003399913.1| - 0.018 15.1 0.0 0.067 13.3 0.0 2.0 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain DEAD PF00270.24 gi|284161290|ref|YP_003399913.1| - 0.037 13.5 0.0 0.19 11.2 0.0 2.0 2 0 0 2 2 2 0 DEAD/DEAH box helicase MobB PF03205.9 gi|284161290|ref|YP_003399913.1| - 0.077 12.7 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|284161290|ref|YP_003399913.1| - 0.083 12.5 0.0 0.083 12.5 0.0 2.7 3 0 0 3 3 3 0 Archaeal ATPase Flavi_DEAD PF07652.9 gi|284161290|ref|YP_003399913.1| - 0.15 11.8 0.2 0.48 10.1 0.0 1.9 2 0 0 2 2 2 0 Flavivirus DEAD domain Asp_Glu_race PF01177.17 gi|284161291|ref|YP_003399914.1| - 4e-39 134.7 0.0 4.5e-39 134.5 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.10 gi|284161291|ref|YP_003399914.1| - 0.014 14.5 0.0 0.061 12.4 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate hydroxymethyltransferase AroM PF07302.6 gi|284161291|ref|YP_003399914.1| - 0.016 14.5 0.1 0.5 9.6 0.0 2.3 2 0 0 2 2 2 0 AroM protein TPP_enzyme_N PF02776.13 gi|284161292|ref|YP_003399915.1| - 1.8e-62 209.8 0.3 1.4e-61 206.9 0.2 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|284161292|ref|YP_003399915.1| - 1.2e-55 187.2 0.1 1.2e-54 184.1 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|284161292|ref|YP_003399915.1| - 2e-50 170.0 0.1 4.4e-50 169.0 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|284161292|ref|YP_003399915.1| - 0.012 15.0 0.4 0.026 14.0 0.3 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.4 gi|284161293|ref|YP_003399916.1| - 5.1e-34 115.8 3.9 5.5e-34 115.7 0.3 2.1 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|284161293|ref|YP_003399916.1| - 1.4e-22 79.2 0.7 3.4e-22 77.9 0.5 1.7 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|284161293|ref|YP_003399916.1| - 3.1e-18 64.8 1.1 5.9e-17 60.7 0.1 2.4 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|284161293|ref|YP_003399916.1| - 7.9e-08 32.5 0.9 1.7e-07 31.4 0.6 1.5 1 0 0 1 1 1 1 ACT domain DUF3355 PF11835.3 gi|284161293|ref|YP_003399916.1| - 5.6e-05 22.9 0.8 7.1e-05 22.6 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3355) NIL PF09383.5 gi|284161293|ref|YP_003399916.1| - 0.0018 17.7 0.1 0.12 11.9 0.0 2.3 2 0 0 2 2 2 1 NIL domain Saccharop_dh_N PF04455.7 gi|284161293|ref|YP_003399916.1| - 0.028 14.5 0.1 0.1 12.7 0.0 1.8 2 0 0 2 2 2 0 LOR/SDH bifunctional enzyme conserved region Acylphosphatase PF00708.13 gi|284161293|ref|YP_003399916.1| - 0.047 13.7 0.7 2.9 8.0 0.2 2.2 2 0 0 2 2 2 0 Acylphosphatase ACT_6 PF13740.1 gi|284161293|ref|YP_003399916.1| - 0.082 12.6 0.2 1.8 8.3 0.0 2.8 1 1 2 3 3 3 0 ACT domain Radical_SAM PF04055.16 gi|284161294|ref|YP_003399917.1| - 4e-11 43.3 0.0 8.1e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284161294|ref|YP_003399917.1| - 0.012 15.7 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284161294|ref|YP_003399917.1| - 0.036 14.1 0.0 0.069 13.1 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Spermine_synth PF01564.12 gi|284161295|ref|YP_003399918.1| - 8e-69 231.2 0.4 9.7e-69 231.0 0.3 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|284161295|ref|YP_003399918.1| - 5.5e-05 23.7 0.0 8.7e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|284161295|ref|YP_003399918.1| - 0.00046 19.2 0.1 0.0008 18.4 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_12 PF08242.7 gi|284161295|ref|YP_003399918.1| - 0.0016 18.9 0.0 0.0027 18.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|284161295|ref|YP_003399918.1| - 0.0023 17.0 0.0 0.0039 16.2 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|284161295|ref|YP_003399918.1| - 0.0029 17.6 0.0 0.0043 17.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284161295|ref|YP_003399918.1| - 0.045 14.1 0.0 0.12 12.7 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_PK PF05891.7 gi|284161295|ref|YP_003399918.1| - 0.12 11.6 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_23 PF13489.1 gi|284161295|ref|YP_003399918.1| - 0.13 12.0 0.0 0.48 10.1 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain RHH_1 PF01402.16 gi|284161296|ref|YP_003399919.1| - 1.8e-13 49.7 0.2 3e-13 49.0 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|284161296|ref|YP_003399919.1| - 2e-10 40.2 0.0 3.3e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.6 gi|284161296|ref|YP_003399919.1| - 0.0016 18.2 0.8 0.0037 17.1 0.0 1.9 1 1 2 3 3 3 1 NikR C terminal nickel binding domain DUF2191 PF09957.4 gi|284161296|ref|YP_003399919.1| - 0.026 14.3 0.0 0.07 12.9 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) GntR PF00392.16 gi|284161296|ref|YP_003399919.1| - 0.039 13.4 0.1 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DnaB_bind PF10410.4 gi|284161296|ref|YP_003399919.1| - 0.065 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 DnaB-helicase binding domain of primase T_Ag_DNA_bind PF02217.11 gi|284161296|ref|YP_003399919.1| - 0.1 13.0 0.5 1 9.7 0.0 2.0 1 1 1 2 2 2 0 Origin of replication binding protein RuvA_C PF07499.8 gi|284161296|ref|YP_003399919.1| - 0.12 12.5 0.1 0.23 11.6 0.1 1.4 1 0 0 1 1 1 0 RuvA, C-terminal domain HTH_11 PF08279.7 gi|284161296|ref|YP_003399919.1| - 0.15 11.7 0.1 0.36 10.4 0.0 1.7 1 0 0 1 1 1 0 HTH domain ABC-3 PF00950.12 gi|284161297|ref|YP_003399920.1| - 3e-33 115.1 30.1 3.3e-33 115.0 20.9 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|284161297|ref|YP_003399920.1| - 0.00041 19.2 27.0 0.00054 18.8 18.7 1.2 1 0 0 1 1 1 1 FecCD transport family TroA PF01297.12 gi|284161298|ref|YP_003399921.1| - 1.9e-15 56.8 0.3 2.3e-15 56.5 0.2 1.2 1 0 0 1 1 1 1 Periplasmic solute binding protein family ABC_tran PF00005.22 gi|284161299|ref|YP_003399922.1| - 6.9e-29 100.8 0.0 9e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284161299|ref|YP_003399922.1| - 4.6e-15 56.3 2.9 7.7e-08 32.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|284161299|ref|YP_003399922.1| - 1.7e-07 30.6 0.0 0.0027 16.7 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|284161299|ref|YP_003399922.1| - 1.1e-06 29.1 0.2 2.1e-06 28.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284161299|ref|YP_003399922.1| - 3e-06 26.6 0.0 0.00032 20.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284161299|ref|YP_003399922.1| - 0.0021 17.5 0.0 0.0043 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SE PF00437.15 gi|284161299|ref|YP_003399922.1| - 0.0038 16.1 0.1 0.0061 15.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|284161299|ref|YP_003399922.1| - 0.0074 16.0 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain MobB PF03205.9 gi|284161299|ref|YP_003399922.1| - 0.009 15.7 0.1 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|284161299|ref|YP_003399922.1| - 0.011 15.4 0.2 0.015 14.9 0.1 1.5 1 1 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|284161299|ref|YP_003399922.1| - 0.013 15.1 0.1 0.027 14.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|284161299|ref|YP_003399922.1| - 0.013 15.4 0.1 0.017 15.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|284161299|ref|YP_003399922.1| - 0.015 15.4 0.1 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284161299|ref|YP_003399922.1| - 0.021 15.6 0.2 0.56 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|284161299|ref|YP_003399922.1| - 0.022 14.2 0.3 0.041 13.3 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.3 gi|284161299|ref|YP_003399922.1| - 0.026 11.8 0.1 0.033 11.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Adeno_IVa2 PF02456.10 gi|284161299|ref|YP_003399922.1| - 0.049 12.2 0.0 0.069 11.7 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_10 PF12846.2 gi|284161299|ref|YP_003399922.1| - 0.08 12.3 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|284161299|ref|YP_003399922.1| - 0.1 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|284161299|ref|YP_003399922.1| - 0.13 12.1 0.1 0.28 11.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|284161299|ref|YP_003399922.1| - 0.14 12.3 0.2 0.29 11.3 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|284161299|ref|YP_003399922.1| - 0.15 10.6 0.0 1.2 7.6 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Peptidase_M24 PF00557.19 gi|284161300|ref|YP_003399923.1| - 7.5e-40 136.7 0.6 9.9e-40 136.3 0.4 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|284161300|ref|YP_003399923.1| - 6.1e-07 29.9 0.0 1.9e-06 28.4 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Lactamase_B PF00753.22 gi|284161301|ref|YP_003399924.1| - 4.1e-35 121.1 0.8 4.8e-35 120.9 0.5 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284161301|ref|YP_003399924.1| - 1.6e-07 31.0 0.7 2.9e-07 30.2 0.5 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284161301|ref|YP_003399924.1| - 0.00088 19.0 0.0 0.0011 18.6 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain SpoU_methylase PF00588.14 gi|284161302|ref|YP_003399925.1| - 4.5e-28 97.9 0.0 6e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF2683 PF10884.3 gi|284161302|ref|YP_003399925.1| - 0.031 14.1 0.1 0.2 11.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2683) HTH_20 PF12840.2 gi|284161304|ref|YP_003399927.1| - 7.1e-06 25.7 0.1 1.2e-05 24.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF742 PF05331.6 gi|284161304|ref|YP_003399927.1| - 1.8e-05 24.2 0.0 2.8e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_5 PF01022.15 gi|284161304|ref|YP_003399927.1| - 4.2e-05 23.1 0.5 8.3e-05 22.1 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284161304|ref|YP_003399927.1| - 8.1e-05 22.2 0.0 0.00013 21.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284161304|ref|YP_003399927.1| - 0.00012 21.6 0.1 0.00029 20.4 0.1 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|284161304|ref|YP_003399927.1| - 0.00017 21.1 0.0 0.00034 20.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|284161304|ref|YP_003399927.1| - 0.00017 20.8 0.3 0.00036 19.8 0.2 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|284161304|ref|YP_003399927.1| - 0.00028 20.7 0.0 0.00056 19.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_41 PF14502.1 gi|284161304|ref|YP_003399927.1| - 0.00032 20.2 0.4 0.0034 16.9 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|284161304|ref|YP_003399927.1| - 0.00036 20.5 0.0 0.0007 19.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284161304|ref|YP_003399927.1| - 0.0061 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|284161304|ref|YP_003399927.1| - 0.0071 15.9 0.0 0.023 14.3 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|284161304|ref|YP_003399927.1| - 0.013 15.0 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|284161304|ref|YP_003399927.1| - 0.014 15.0 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|284161304|ref|YP_003399927.1| - 0.031 13.7 3.1 0.13 11.7 0.4 2.3 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_45 PF14947.1 gi|284161304|ref|YP_003399927.1| - 0.043 13.6 0.0 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_28 PF13518.1 gi|284161304|ref|YP_003399927.1| - 0.044 13.8 0.0 0.23 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284161304|ref|YP_003399927.1| - 0.047 13.0 0.0 0.098 11.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.1 gi|284161304|ref|YP_003399927.1| - 0.051 13.9 0.0 0.096 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.14 gi|284161304|ref|YP_003399927.1| - 0.054 12.8 0.0 0.13 11.6 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family FeoC PF09012.5 gi|284161304|ref|YP_003399927.1| - 0.073 12.7 0.0 0.16 11.7 0.0 1.5 1 1 0 1 1 1 0 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|284161304|ref|YP_003399927.1| - 0.079 13.0 0.0 0.2 11.7 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator DUF4423 PF14394.1 gi|284161304|ref|YP_003399927.1| - 0.091 12.2 0.1 0.15 11.6 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Orthopox_F14 PF06076.7 gi|284161304|ref|YP_003399927.1| - 0.099 12.7 2.7 0.29 11.2 0.1 2.2 1 1 0 2 2 2 0 Orthopoxvirus F14 protein Arch_fla_DE PF04659.8 gi|284161304|ref|YP_003399927.1| - 0.11 12.2 0.3 0.19 11.5 0.2 1.4 1 1 0 1 1 1 0 Archaeal flagella protein DDRGK PF09756.4 gi|284161304|ref|YP_003399927.1| - 0.11 11.8 0.5 0.16 11.3 0.3 1.2 1 0 0 1 1 1 0 DDRGK domain Penicillinase_R PF03965.11 gi|284161304|ref|YP_003399927.1| - 0.12 12.4 0.0 0.29 11.2 0.0 1.7 1 1 0 1 1 1 0 Penicillinase repressor HTH_40 PF14493.1 gi|284161304|ref|YP_003399927.1| - 0.13 12.5 0.0 0.56 10.4 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|284161304|ref|YP_003399927.1| - 0.13 12.4 0.0 0.32 11.1 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix Radical_SAM PF04055.16 gi|284161305|ref|YP_003399928.1| - 2.6e-14 53.7 0.4 1.1e-13 51.6 0.2 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Glyco_tran_WecB PF03808.8 gi|284161305|ref|YP_003399928.1| - 0.00091 18.6 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase WecB/TagA/CpsF family ATC_hydrolase PF14196.1 gi|284161305|ref|YP_003399928.1| - 0.046 14.1 0.1 0.087 13.2 0.0 1.4 1 0 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Glycos_transf_2 PF00535.21 gi|284161306|ref|YP_003399929.1| - 1.8e-24 86.3 0.2 2.9e-24 85.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284161306|ref|YP_003399929.1| - 3.7e-11 43.2 0.0 5.9e-11 42.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|284161306|ref|YP_003399929.1| - 0.00096 19.4 0.0 0.0017 18.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Lectin_N PF03954.9 gi|284161306|ref|YP_003399929.1| - 0.053 12.9 0.5 0.11 11.8 0.4 1.5 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain DUF2207 PF09972.4 gi|284161306|ref|YP_003399929.1| - 0.096 11.2 1.7 0.12 10.9 1.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TMEM171 PF15471.1 gi|284161306|ref|YP_003399929.1| - 0.11 11.3 0.1 0.15 10.8 0.1 1.1 1 0 0 1 1 1 0 Transmembrane protein family 171 Transpep_BrtH PF14399.1 gi|284161306|ref|YP_003399929.1| - 0.14 11.3 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 NlpC/p60-like transpeptidase UPF0182 PF03699.8 gi|284161306|ref|YP_003399929.1| - 0.16 9.9 0.4 0.2 9.5 0.3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) Pribosyltran PF00156.22 gi|284161307|ref|YP_003399930.1| - 1.8e-23 82.5 0.1 3.1e-23 81.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|284161307|ref|YP_003399930.1| - 8.2e-07 28.5 0.1 0.0085 15.4 0.0 2.1 2 0 0 2 2 2 2 Phosphoribosyl transferase HTH_7 PF02796.10 gi|284161307|ref|YP_003399930.1| - 5.1e-05 23.0 0.0 0.00012 21.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase UPRTase PF14681.1 gi|284161307|ref|YP_003399930.1| - 0.0007 18.8 0.0 0.00087 18.5 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_11 PF08279.7 gi|284161307|ref|YP_003399930.1| - 0.00089 18.8 0.1 0.002 17.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|284161307|ref|YP_003399930.1| - 0.0014 17.9 0.0 0.0037 16.5 0.0 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.1 gi|284161307|ref|YP_003399930.1| - 0.0055 16.8 0.0 0.019 15.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|284161307|ref|YP_003399930.1| - 0.0087 15.6 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|284161307|ref|YP_003399930.1| - 0.0095 15.4 0.1 0.023 14.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284161307|ref|YP_003399930.1| - 0.02 14.2 0.1 0.039 13.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|284161307|ref|YP_003399930.1| - 0.07 12.9 0.0 0.93 9.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|284161307|ref|YP_003399930.1| - 0.079 12.8 0.1 0.16 11.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_Crp_2 PF13545.1 gi|284161307|ref|YP_003399930.1| - 0.08 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284161307|ref|YP_003399930.1| - 0.084 12.3 0.1 0.17 11.4 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|284161307|ref|YP_003399930.1| - 0.1 12.1 0.0 0.39 10.3 0.0 1.9 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|284161307|ref|YP_003399930.1| - 0.13 12.3 0.0 0.34 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|284161307|ref|YP_003399930.1| - 0.31 11.1 1.6 2.2 8.3 0.1 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain PIN_4 PF13638.1 gi|284161308|ref|YP_003399931.1| - 0.00019 21.5 1.9 0.00041 20.4 1.3 1.5 1 1 0 1 1 1 1 PIN domain RecR PF02132.10 gi|284161308|ref|YP_003399931.1| - 0.052 12.9 0.3 0.096 12.1 0.2 1.4 1 0 0 1 1 1 0 RecR protein DNA_ligase_ZBD PF03119.11 gi|284161308|ref|YP_003399931.1| - 0.055 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain RHSP PF07999.6 gi|284161308|ref|YP_003399931.1| - 0.059 11.9 0.1 0.073 11.6 0.1 1.1 1 0 0 1 1 1 0 Retrotransposon hot spot protein DZR PF12773.2 gi|284161308|ref|YP_003399931.1| - 0.073 12.9 0.3 0.12 12.2 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Phage-MuB_C PF09077.6 gi|284161308|ref|YP_003399931.1| - 0.09 12.4 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 Mu B transposition protein, C terminal CHB_HEX PF03173.8 gi|284161308|ref|YP_003399931.1| - 0.11 11.9 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative carbohydrate binding domain NOB1_Zn_bind PF08772.6 gi|284161308|ref|YP_003399931.1| - 0.14 12.0 0.7 0.43 10.4 0.5 1.9 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF2680 PF10925.3 gi|284161309|ref|YP_003399932.1| - 0.0069 16.2 0.2 0.014 15.2 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2680) PFL PF02901.10 gi|284161309|ref|YP_003399932.1| - 0.071 11.5 0.0 0.087 11.2 0.0 1.1 1 0 0 1 1 1 0 Pyruvate formate lyase DUF1878 PF08963.5 gi|284161309|ref|YP_003399932.1| - 0.11 12.7 0.2 0.11 12.6 0.1 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1878) VASP_tetra PF08776.6 gi|284161309|ref|YP_003399932.1| - 0.18 11.1 0.1 0.18 11.1 0.0 1.8 2 0 0 2 2 2 0 VASP tetramerisation domain ThiI PF02568.9 gi|284161310|ref|YP_003399933.1| - 3e-67 225.8 0.0 4.1e-67 225.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|284161310|ref|YP_003399933.1| - 1.2e-24 86.8 2.7 1.2e-24 86.8 1.9 2.3 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|284161310|ref|YP_003399933.1| - 1.4e-07 31.0 0.0 8.9e-07 28.4 0.0 2.0 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|284161310|ref|YP_003399933.1| - 0.0042 16.6 0.0 0.096 12.1 0.0 2.4 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|284161310|ref|YP_003399933.1| - 0.0079 14.7 0.0 0.012 14.1 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|284161310|ref|YP_003399933.1| - 0.026 14.0 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase CBFD_NFYB_HMF PF00808.18 gi|284161311|ref|YP_003399934.1| - 1e-18 67.1 1.4 1.1e-18 66.9 1.0 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|284161311|ref|YP_003399934.1| - 2.3e-14 53.2 0.5 2.9e-14 52.9 0.3 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|284161311|ref|YP_003399934.1| - 1.1e-06 28.2 0.0 1.3e-06 28.0 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.1 gi|284161311|ref|YP_003399934.1| - 1.4e-06 28.3 0.1 1.5e-06 28.2 0.1 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-31kDa PF02291.10 gi|284161311|ref|YP_003399934.1| - 0.0001 22.1 0.1 0.00011 21.9 0.1 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID-18kDa PF02269.11 gi|284161311|ref|YP_003399934.1| - 0.00016 21.4 0.1 0.00017 21.3 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID_20kDa PF03847.8 gi|284161311|ref|YP_003399934.1| - 0.00019 21.6 0.2 0.00021 21.4 0.2 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A PCP_red PF08369.5 gi|284161311|ref|YP_003399934.1| - 0.023 14.5 4.5 1.7 8.5 0.2 2.5 1 1 2 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit DUF1931 PF09123.6 gi|284161311|ref|YP_003399934.1| - 0.041 13.8 1.0 0.044 13.7 0.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) HEAT_2 PF13646.1 gi|284161311|ref|YP_003399934.1| - 0.043 14.1 0.2 0.048 13.9 0.1 1.2 1 0 0 1 1 1 0 HEAT repeats TAF PF02969.12 gi|284161311|ref|YP_003399934.1| - 0.059 13.3 0.4 0.073 13.0 0.3 1.2 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) ATP-cone PF03477.11 gi|284161311|ref|YP_003399934.1| - 0.06 13.7 0.6 0.074 13.4 0.4 1.1 1 0 0 1 1 1 0 ATP cone domain CENP-T PF15511.1 gi|284161311|ref|YP_003399934.1| - 0.096 11.9 0.7 0.13 11.5 0.5 1.4 1 1 0 1 1 1 0 Centromere kinetochore component CENP-T DapB_C PF05173.9 gi|284161312|ref|YP_003399935.1| - 1.2e-44 151.3 0.0 2.5e-44 150.2 0.0 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|284161312|ref|YP_003399935.1| - 5.9e-37 126.3 0.7 9e-37 125.7 0.5 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|284161312|ref|YP_003399935.1| - 0.00047 20.4 0.3 0.00084 19.6 0.2 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|284161312|ref|YP_003399935.1| - 0.0065 16.9 2.9 0.013 16.0 2.0 1.5 1 0 0 1 1 1 1 CoA binding domain 3Beta_HSD PF01073.14 gi|284161312|ref|YP_003399935.1| - 0.0068 15.1 1.0 0.0098 14.6 0.7 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|284161312|ref|YP_003399935.1| - 0.0069 16.4 1.3 0.011 15.7 0.9 1.3 1 0 0 1 1 1 1 NADH(P)-binding Gp_dh_N PF00044.19 gi|284161312|ref|YP_003399935.1| - 0.025 14.5 1.3 0.062 13.2 0.9 1.7 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Xan_ur_permease PF00860.15 gi|284161313|ref|YP_003399936.1| - 7.3e-38 130.0 41.4 7.3e-38 130.0 28.7 1.9 1 1 1 2 2 2 1 Permease family Enolase_C PF00113.17 gi|284161315|ref|YP_003399938.1| - 1.3e-77 260.7 0.6 1.9e-77 260.1 0.4 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|284161315|ref|YP_003399938.1| - 4e-38 130.3 0.2 1.1e-37 128.8 0.1 1.8 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|284161315|ref|YP_003399938.1| - 1.5e-06 28.6 0.0 2.5e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MAAL_C PF07476.6 gi|284161315|ref|YP_003399938.1| - 0.00019 20.4 0.0 0.00034 19.6 0.0 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.1 gi|284161315|ref|YP_003399938.1| - 0.016 15.1 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 Enolase C-terminal domain-like A2M_recep PF07677.9 gi|284161316|ref|YP_003399939.1| - 0.024 14.7 0.2 0.038 14.1 0.1 1.5 1 1 0 1 1 1 0 A-macroglobulin receptor Radical_SAM PF04055.16 gi|284161317|ref|YP_003399940.1| - 1.6e-05 25.1 0.0 2.9e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|284161317|ref|YP_003399940.1| - 0.0011 18.5 6.4 0.038 13.5 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) Amino_oxidase PF01593.19 gi|284161318|ref|YP_003399941.1| - 1.4e-12 47.4 0.0 3.7e-11 42.7 0.0 2.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|284161318|ref|YP_003399941.1| - 2.1e-08 34.0 0.0 4.3e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|284161318|ref|YP_003399941.1| - 0.0098 15.7 0.0 0.023 14.5 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284161318|ref|YP_003399941.1| - 0.015 14.2 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|284161318|ref|YP_003399941.1| - 0.15 11.0 0.0 0.23 10.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.22 gi|284161318|ref|YP_003399941.1| - 0.17 12.2 1.5 0.25 11.7 0.0 2.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284161318|ref|YP_003399941.1| - 0.19 10.5 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain FeS PF04060.8 gi|284161319|ref|YP_003399942.1| - 3.1e-10 39.4 4.1 5e-10 38.7 2.9 1.3 1 0 0 1 1 1 1 Putative Fe-S cluster Glyco_hydro_88 PF07470.8 gi|284161320|ref|YP_003399943.1| - 0.041 12.9 2.6 0.044 12.8 1.8 1.0 1 0 0 1 1 1 0 Glycosyl Hydrolase Family 88 BEX PF04538.7 gi|284161320|ref|YP_003399943.1| - 0.05 13.8 0.1 0.057 13.6 0.1 1.1 1 0 0 1 1 1 0 Brain expressed X-linked like family ABC_tran PF00005.22 gi|284161321|ref|YP_003399944.1| - 1.7e-34 119.0 0.0 2.8e-34 118.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284161321|ref|YP_003399944.1| - 3.6e-15 56.7 0.2 2.6e-07 30.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284161321|ref|YP_003399944.1| - 4.4e-07 29.3 0.4 0.007 15.6 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284161321|ref|YP_003399944.1| - 3.7e-06 26.3 0.1 7.3e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|284161321|ref|YP_003399944.1| - 2.3e-05 23.6 0.1 0.019 14.0 0.0 2.1 2 0 0 2 2 2 2 Zeta toxin AAA_23 PF13476.1 gi|284161321|ref|YP_003399944.1| - 6.1e-05 23.4 1.0 8.6e-05 22.9 0.7 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284161321|ref|YP_003399944.1| - 6.9e-05 22.9 0.1 0.00016 21.7 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|284161321|ref|YP_003399944.1| - 0.00049 20.2 0.1 0.075 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|284161321|ref|YP_003399944.1| - 0.00049 19.2 0.1 0.041 12.9 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|284161321|ref|YP_003399944.1| - 0.0012 18.6 0.3 0.0036 17.0 0.2 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|284161321|ref|YP_003399944.1| - 0.0015 18.7 0.2 0.0066 16.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|284161321|ref|YP_003399944.1| - 0.0016 18.1 0.2 0.01 15.5 0.0 2.2 2 1 0 2 2 2 1 Part of AAA domain MMR_HSR1 PF01926.18 gi|284161321|ref|YP_003399944.1| - 0.0023 17.9 0.1 0.05 13.5 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|284161321|ref|YP_003399944.1| - 0.0023 17.5 0.1 0.029 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|284161321|ref|YP_003399944.1| - 0.0023 17.3 0.3 0.089 12.2 0.1 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|284161321|ref|YP_003399944.1| - 0.0042 16.9 0.0 0.11 12.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|284161321|ref|YP_003399944.1| - 0.0052 16.5 1.0 0.051 13.2 0.7 2.1 1 1 0 1 1 1 1 NTPase ABC_ATPase PF09818.4 gi|284161321|ref|YP_003399944.1| - 0.0073 14.9 0.2 2.5 6.6 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class UPF0079 PF02367.12 gi|284161321|ref|YP_003399944.1| - 0.0093 15.5 0.1 0.019 14.6 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|284161321|ref|YP_003399944.1| - 0.0096 15.6 0.1 0.023 14.3 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF3584 PF12128.3 gi|284161321|ref|YP_003399944.1| - 0.011 13.1 0.2 0.017 12.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_5 PF07728.9 gi|284161321|ref|YP_003399944.1| - 0.012 15.3 0.1 1.4 8.6 0.0 2.7 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|284161321|ref|YP_003399944.1| - 0.012 15.4 0.0 0.029 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|284161321|ref|YP_003399944.1| - 0.012 14.5 0.0 0.024 13.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|284161321|ref|YP_003399944.1| - 0.014 14.7 0.1 0.026 13.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|284161321|ref|YP_003399944.1| - 0.017 15.0 0.1 0.052 13.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|284161321|ref|YP_003399944.1| - 0.021 14.0 0.0 0.033 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|284161321|ref|YP_003399944.1| - 0.021 14.2 0.4 0.039 13.3 0.1 1.6 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.7 gi|284161321|ref|YP_003399944.1| - 0.029 14.0 0.3 0.071 12.7 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_10 PF12846.2 gi|284161321|ref|YP_003399944.1| - 0.031 13.7 0.0 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain ArgK PF03308.11 gi|284161321|ref|YP_003399944.1| - 0.056 12.2 0.1 0.087 11.5 0.0 1.2 1 0 0 1 1 1 0 ArgK protein NB-ARC PF00931.17 gi|284161321|ref|YP_003399944.1| - 0.058 12.2 0.4 0.35 9.6 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain Miro PF08477.8 gi|284161321|ref|YP_003399944.1| - 0.066 13.7 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein PIF1 PF05970.9 gi|284161321|ref|YP_003399944.1| - 0.088 11.7 0.2 1.2 7.9 0.0 2.0 2 0 0 2 2 2 0 PIF1-like helicase MutS_V PF00488.16 gi|284161321|ref|YP_003399944.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 MutS domain V AAA_13 PF13166.1 gi|284161321|ref|YP_003399944.1| - 0.12 10.8 0.0 0.23 9.8 0.0 1.4 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|284161321|ref|YP_003399944.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284161321|ref|YP_003399944.1| - 0.18 12.6 0.4 0.21 12.3 0.3 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|284161322|ref|YP_003399945.1| - 3e-31 108.5 0.0 3.8e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284161322|ref|YP_003399945.1| - 7.2e-13 49.1 3.5 4.2e-06 26.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|284161322|ref|YP_003399945.1| - 4.2e-06 26.2 0.1 7.8e-06 25.4 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|284161322|ref|YP_003399945.1| - 2.8e-05 23.5 0.1 4.6e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284161322|ref|YP_003399945.1| - 0.00059 20.2 0.1 0.00068 20.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|284161322|ref|YP_003399945.1| - 0.0063 15.7 0.0 0.0094 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|284161322|ref|YP_003399945.1| - 0.0076 15.4 2.3 0.17 11.0 0.4 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|284161322|ref|YP_003399945.1| - 0.014 15.2 0.0 0.047 13.5 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|284161322|ref|YP_003399945.1| - 0.016 14.3 0.0 0.35 9.8 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|284161322|ref|YP_003399945.1| - 0.027 14.1 0.2 0.24 11.0 0.1 2.6 1 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|284161322|ref|YP_003399945.1| - 0.027 14.3 0.4 0.04 13.8 0.3 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.20 gi|284161322|ref|YP_003399945.1| - 0.051 13.0 0.0 0.051 13.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|284161322|ref|YP_003399945.1| - 0.052 13.1 0.0 0.078 12.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|284161322|ref|YP_003399945.1| - 0.069 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|284161322|ref|YP_003399945.1| - 0.075 12.9 0.0 0.2 11.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|284161322|ref|YP_003399945.1| - 0.089 11.2 0.1 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284161322|ref|YP_003399945.1| - 0.15 12.8 0.6 0.29 11.9 0.4 1.9 1 1 0 1 1 1 0 AAA domain Peripla_BP_6 PF13458.1 gi|284161323|ref|YP_003399946.1| - 3.1e-45 155.0 0.0 3.4e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|284161323|ref|YP_003399946.1| - 1.3e-19 70.1 3.9 3.1e-18 65.6 2.7 2.5 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|284161323|ref|YP_003399946.1| - 9.2e-17 60.8 1.0 6.7e-16 58.0 0.7 1.9 1 1 0 1 1 1 1 Receptor family ligand binding region Fe-ADH PF00465.14 gi|284161323|ref|YP_003399946.1| - 0.0087 14.7 0.1 0.014 14.0 0.1 1.3 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase IMPDH PF00478.20 gi|284161323|ref|YP_003399946.1| - 0.051 12.4 0.6 0.2 10.5 0.2 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Fe-ADH_2 PF13685.1 gi|284161323|ref|YP_003399946.1| - 0.054 12.7 0.1 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase N_NLPC_P60 PF12912.2 gi|284161323|ref|YP_003399946.1| - 0.13 12.3 0.0 0.37 10.8 0.0 1.7 1 0 0 1 1 1 0 NLPC_P60 stabilising domain, N term BPD_transp_2 PF02653.11 gi|284161324|ref|YP_003399947.1| - 7.5e-35 120.1 43.8 8.7e-35 119.9 30.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|284161325|ref|YP_003399948.1| - 2.5e-40 138.1 38.4 2.5e-40 138.1 26.6 1.3 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component PetM PF08041.6 gi|284161325|ref|YP_003399948.1| - 1.8 8.1 11.3 0.14 11.6 1.8 3.6 3 0 0 3 3 3 0 PetM family of cytochrome b6f complex subunit 7 Trp_syntA PF00290.15 gi|284161326|ref|YP_003399949.1| - 3.1e-86 288.1 0.0 3.6e-86 287.9 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|284161326|ref|YP_003399949.1| - 4.3e-08 32.7 0.0 7.6e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|284161326|ref|YP_003399949.1| - 1.5e-05 24.3 1.7 4.4e-05 22.8 0.2 2.1 2 1 1 3 3 3 1 PcrB family Ribul_P_3_epim PF00834.14 gi|284161326|ref|YP_003399949.1| - 0.039 13.0 0.1 0.17 10.9 0.0 1.9 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family NanE PF04131.9 gi|284161326|ref|YP_003399949.1| - 0.06 12.3 0.0 0.09 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|284161326|ref|YP_003399949.1| - 0.096 11.7 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI PALP PF00291.20 gi|284161327|ref|YP_003399950.1| - 1.7e-46 158.8 0.3 2.2e-46 158.5 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF2191 PF09957.4 gi|284161327|ref|YP_003399950.1| - 0.061 13.1 0.0 0.86 9.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) ACT_7 PF13840.1 gi|284161328|ref|YP_003399951.1| - 3.4e-13 48.9 0.1 4.9e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 ACT domain Chromo_shadow PF01393.14 gi|284161328|ref|YP_003399951.1| - 0.016 15.0 0.0 0.058 13.2 0.0 1.8 2 0 0 2 2 2 0 Chromo shadow domain ACT PF01842.20 gi|284161328|ref|YP_003399951.1| - 0.097 12.1 0.1 0.24 10.9 0.1 1.7 1 1 0 1 1 1 0 ACT domain SSF PF00474.12 gi|284161328|ref|YP_003399951.1| - 0.1 11.2 0.1 0.11 11.0 0.1 1.1 1 0 0 1 1 1 0 Sodium:solute symporter family ACT_7 PF13840.1 gi|284161329|ref|YP_003399952.1| - 9.8e-19 66.6 0.0 1.4e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|284161329|ref|YP_003399952.1| - 0.034 13.6 0.0 0.091 12.2 0.0 1.9 1 1 0 1 1 1 0 ACT domain PRAI PF00697.17 gi|284161330|ref|YP_003399953.1| - 2.5e-31 108.7 0.2 2.9e-31 108.5 0.2 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DUF718 PF05336.8 gi|284161330|ref|YP_003399953.1| - 0.00064 19.5 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF718) QRPTase_C PF01729.14 gi|284161330|ref|YP_003399953.1| - 0.021 14.3 0.7 0.25 10.8 0.5 2.1 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain OKR_DC_1_N PF03709.10 gi|284161330|ref|YP_003399953.1| - 0.044 13.8 0.1 0.09 12.8 0.1 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain PEPCK_ATP PF01293.15 gi|284161330|ref|YP_003399953.1| - 0.094 11.2 0.0 0.13 10.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Ribul_P_3_epim PF00834.14 gi|284161330|ref|YP_003399953.1| - 0.12 11.4 0.4 0.6 9.1 0.2 2.1 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family GATase PF00117.23 gi|284161331|ref|YP_003399954.1| - 6e-48 162.8 0.0 6.7e-48 162.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284161331|ref|YP_003399954.1| - 1e-12 47.9 0.1 2.7e-12 46.5 0.1 1.6 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|284161332|ref|YP_003399955.1| - 1.3e-90 303.2 0.0 2.9e-90 302.0 0.1 1.5 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|284161332|ref|YP_003399955.1| - 1.7e-20 73.5 0.1 2.1e-19 69.9 0.1 2.5 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region Glycos_transf_3 PF00591.16 gi|284161333|ref|YP_003399956.1| - 3.1e-78 262.6 0.0 4.2e-78 262.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|284161333|ref|YP_003399956.1| - 3.3e-18 65.0 1.1 2.2e-17 62.3 0.3 2.5 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain IGPS PF00218.16 gi|284161334|ref|YP_003399957.1| - 1.9e-55 187.7 0.0 2.3e-55 187.4 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PDGF_N PF04692.8 gi|284161334|ref|YP_003399957.1| - 0.021 15.2 0.0 0.051 14.0 0.0 1.6 1 0 0 1 1 1 0 Platelet-derived growth factor, N terminal region His_biosynth PF00977.16 gi|284161334|ref|YP_003399957.1| - 0.052 12.8 0.0 0.47 9.6 0.0 2.2 1 1 1 2 2 2 0 Histidine biosynthesis protein tRNA-synt_2b PF00587.20 gi|284161335|ref|YP_003399958.1| - 4.3e-55 185.9 0.3 1e-54 184.7 0.2 1.7 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|284161335|ref|YP_003399958.1| - 1.1e-25 89.4 0.1 1.6e-24 85.6 0.0 2.6 2 0 0 2 2 2 1 Anticodon binding domain DUF650 PF04894.7 gi|284161336|ref|YP_003399959.1| - 2.9e-90 302.4 0.0 3.8e-90 302.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|284161336|ref|YP_003399959.1| - 3.1e-32 110.4 0.2 5.1e-32 109.7 0.1 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) NTPase_1 PF03266.10 gi|284161337|ref|YP_003399960.1| - 3.7e-49 166.6 0.1 4.1e-49 166.5 0.1 1.0 1 0 0 1 1 1 1 NTPase AAA_22 PF13401.1 gi|284161337|ref|YP_003399960.1| - 0.00019 21.5 0.0 0.00072 19.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284161337|ref|YP_003399960.1| - 0.0015 19.3 0.2 0.0026 18.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284161337|ref|YP_003399960.1| - 0.0016 18.6 0.0 0.0029 17.8 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|284161337|ref|YP_003399960.1| - 0.0039 17.0 0.0 0.016 15.1 0.0 2.0 1 1 1 2 2 2 1 AAA domain NACHT PF05729.7 gi|284161337|ref|YP_003399960.1| - 0.0071 16.0 0.1 0.62 9.6 0.0 2.1 2 0 0 2 2 2 1 NACHT domain KaiC PF06745.8 gi|284161337|ref|YP_003399960.1| - 0.017 14.2 0.2 0.046 12.8 0.0 1.8 2 1 0 2 2 2 0 KaiC AAA_24 PF13479.1 gi|284161337|ref|YP_003399960.1| - 0.019 14.5 0.1 0.63 9.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|284161337|ref|YP_003399960.1| - 0.021 13.6 0.0 0.042 12.7 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.1 gi|284161337|ref|YP_003399960.1| - 0.043 13.2 0.0 0.097 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|284161337|ref|YP_003399960.1| - 0.058 13.2 0.0 0.086 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|284161337|ref|YP_003399960.1| - 0.07 13.1 0.0 0.099 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|284161337|ref|YP_003399960.1| - 0.13 12.6 1.0 0.21 11.9 0.7 1.7 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|284161337|ref|YP_003399960.1| - 0.14 11.7 0.0 5 6.6 0.0 2.4 1 1 2 3 3 3 0 AAA domain TRM PF02005.11 gi|284161338|ref|YP_003399961.1| - 4.1e-106 355.0 0.0 4.5e-106 354.9 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|284161338|ref|YP_003399961.1| - 3.5e-10 39.8 0.1 7.1e-10 38.7 0.1 1.5 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|284161338|ref|YP_003399961.1| - 3.3e-06 26.5 0.0 5.7e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|284161338|ref|YP_003399961.1| - 0.00013 21.4 0.0 0.00022 20.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|284161338|ref|YP_003399961.1| - 0.0035 16.9 0.1 0.01 15.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Rrf2 PF02082.15 gi|284161338|ref|YP_003399961.1| - 0.0038 17.3 0.0 0.024 14.7 0.0 2.0 1 1 1 2 2 2 1 Transcriptional regulator Hjc PF01870.13 gi|284161338|ref|YP_003399961.1| - 0.0055 16.2 0.1 12 5.5 0.0 3.4 3 0 0 3 3 3 0 Archaeal holliday junction resolvase (hjc) PrmA PF06325.8 gi|284161338|ref|YP_003399961.1| - 0.0074 15.4 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.4 gi|284161338|ref|YP_003399961.1| - 0.048 13.1 0.0 0.089 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_26 PF13659.1 gi|284161338|ref|YP_003399961.1| - 0.067 13.2 0.0 0.14 12.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain BTB_2 PF02214.17 gi|284161338|ref|YP_003399961.1| - 0.073 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 BTB/POZ domain Methyltransf_25 PF13649.1 gi|284161338|ref|YP_003399961.1| - 0.13 12.6 0.0 0.71 10.2 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain HTH_6 PF01418.12 gi|284161338|ref|YP_003399961.1| - 0.14 11.9 0.1 0.37 10.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family bZIP_1 PF00170.16 gi|284161340|ref|YP_003399963.1| - 0.055 13.4 0.5 0.064 13.2 0.4 1.1 1 0 0 1 1 1 0 bZIP transcription factor Sda PF08970.5 gi|284161341|ref|YP_003399964.1| - 0.009 15.4 1.5 0.084 12.3 0.0 2.2 2 0 0 2 2 2 1 Sporulation inhibitor A HHH_6 PF14579.1 gi|284161341|ref|YP_003399964.1| - 0.038 14.0 0.0 0.045 13.7 0.0 1.3 1 1 0 1 1 1 0 Helix-hairpin-helix motif DUF217 PF02697.9 gi|284161341|ref|YP_003399964.1| - 0.038 14.2 1.3 0.047 13.9 0.9 1.2 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 EAP30 PF04157.11 gi|284161341|ref|YP_003399964.1| - 0.053 12.6 0.2 0.057 12.5 0.1 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family Cytadhesin_P30 PF07271.6 gi|284161341|ref|YP_003399964.1| - 0.49 9.6 2.1 0.5 9.5 1.4 1.0 1 0 0 1 1 1 0 Cytadhesin P30/P32 DUF3901 PF13040.1 gi|284161341|ref|YP_003399964.1| - 3.7 6.9 8.1 1.6 8.0 0.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3901) tRNA-synt_1g PF09334.6 gi|284161342|ref|YP_003399965.1| - 3.6e-149 496.6 0.0 4.5e-149 496.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|284161342|ref|YP_003399965.1| - 3.1e-27 94.2 0.6 6e-27 93.3 0.4 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|284161342|ref|YP_003399965.1| - 1.6e-22 79.3 0.2 1.9e-11 42.6 0.1 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|284161342|ref|YP_003399965.1| - 2.7e-14 52.9 4.6 4.5e-10 39.1 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|284161342|ref|YP_003399965.1| - 1.1e-07 31.7 1.1 2.5e-07 30.5 0.8 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|284161342|ref|YP_003399965.1| - 0.00015 20.6 0.7 0.15 10.8 0.1 2.4 1 1 1 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|284161342|ref|YP_003399965.1| - 0.00017 20.3 0.1 2.8 6.5 0.0 3.2 3 0 0 3 3 3 3 tRNA synthetases class I (K) zinc_ribbon_2 PF13240.1 gi|284161342|ref|YP_003399965.1| - 0.12 11.9 8.5 0.25 10.8 1.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284161342|ref|YP_003399965.1| - 0.13 11.4 9.2 0.58 9.4 2.1 3.0 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|284161342|ref|YP_003399965.1| - 0.29 11.0 7.1 1.3 8.8 4.9 2.0 1 1 0 1 1 1 0 Double zinc ribbon ASCH PF04266.9 gi|284161343|ref|YP_003399966.1| - 3.8e-14 52.9 1.5 5.7e-14 52.3 0.6 1.6 1 1 1 2 2 2 1 ASCH domain DUF3227 PF11537.3 gi|284161343|ref|YP_003399966.1| - 0.014 15.4 0.1 0.03 14.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3227) SRP54_N PF02881.14 gi|284161343|ref|YP_003399966.1| - 0.018 15.1 2.6 0.28 11.3 0.0 2.6 3 0 0 3 3 3 0 SRP54-type protein, helical bundle domain ERCC4 PF02732.10 gi|284161344|ref|YP_003399967.1| - 3.9e-26 91.5 0.1 1.4e-25 89.7 0.0 2.0 2 0 0 2 2 2 1 ERCC4 domain DEAD PF00270.24 gi|284161344|ref|YP_003399967.1| - 7.3e-23 80.8 0.0 1.9e-22 79.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|284161344|ref|YP_003399967.1| - 6e-20 70.8 0.2 1.8e-19 69.3 0.1 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|284161344|ref|YP_003399967.1| - 1.4e-14 54.3 0.0 3.6e-14 53.0 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|284161344|ref|YP_003399967.1| - 8.3e-14 51.5 0.2 3.4e-12 46.3 0.0 2.9 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|284161344|ref|YP_003399967.1| - 6.8e-12 45.1 0.0 1.7e-11 43.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|284161344|ref|YP_003399967.1| - 7.1e-08 31.7 0.1 2.8e-06 26.6 0.1 3.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.18 gi|284161344|ref|YP_003399967.1| - 5.2e-05 22.1 0.4 0.00012 21.0 0.0 1.7 2 0 0 2 2 2 1 SNF2 family N-terminal domain HHH_3 PF12836.2 gi|284161344|ref|YP_003399967.1| - 5.3e-05 23.0 0.1 0.0011 18.8 0.0 3.2 2 1 1 3 3 3 1 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.10 gi|284161344|ref|YP_003399967.1| - 0.0044 16.4 0.7 0.013 14.8 0.1 2.2 2 0 0 2 2 2 1 Bacterial RNA polymerase, alpha chain C terminal domain DUF1870 PF08965.5 gi|284161344|ref|YP_003399967.1| - 0.0087 15.7 0.1 0.13 11.9 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1870) HHH_8 PF14716.1 gi|284161344|ref|YP_003399967.1| - 0.0099 16.0 1.1 0.1 12.8 0.1 3.3 2 1 1 3 3 3 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|284161344|ref|YP_003399967.1| - 0.054 13.7 0.1 0.43 10.8 0.0 2.5 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Terminase_GpA PF05876.7 gi|284161344|ref|YP_003399967.1| - 0.16 10.2 0.0 0.35 9.1 0.0 1.5 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) MGS PF02142.17 gi|284161345|ref|YP_003399968.1| - 1.2e-15 57.1 0.0 1.6e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 MGS-like domain ArsR PF09824.4 gi|284161346|ref|YP_003399969.1| - 1.5e-52 177.1 0.4 1.7e-52 176.9 0.3 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_9 PF08221.6 gi|284161346|ref|YP_003399969.1| - 0.013 15.3 0.0 0.7 9.8 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain GntR PF00392.16 gi|284161346|ref|YP_003399969.1| - 0.051 13.0 0.2 1.1 8.7 0.0 2.6 2 1 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF4464 PF14713.1 gi|284161346|ref|YP_003399969.1| - 0.09 12.1 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4464) CDC37_C PF08564.5 gi|284161346|ref|YP_003399969.1| - 0.095 12.5 0.4 15 5.4 0.1 2.2 2 0 0 2 2 2 0 Cdc37 C terminal domain DUF504 PF04457.7 gi|284161347|ref|YP_003399970.1| - 3.5e-16 59.0 1.0 4.5e-16 58.7 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF504) Lyase_1 PF00206.15 gi|284161348|ref|YP_003399971.1| - 4.7e-59 200.1 0.0 7.4e-59 199.4 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|284161348|ref|YP_003399971.1| - 1.2e-10 41.2 0.3 4.5e-10 39.4 0.0 2.1 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal HALZ PF02183.13 gi|284161348|ref|YP_003399971.1| - 0.0021 17.7 1.0 0.17 11.6 0.1 2.8 3 0 0 3 3 3 1 Homeobox associated leucine zipper Asparaginase PF00710.15 gi|284161349|ref|YP_003399972.1| - 2.5e-90 302.5 0.0 3.2e-90 302.1 0.0 1.0 1 0 0 1 1 1 1 Asparaginase DUF1218 PF06749.7 gi|284161349|ref|YP_003399972.1| - 0.12 12.8 0.1 0.24 11.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1218) Band_7 PF01145.20 gi|284161351|ref|YP_003399974.1| - 6.6e-38 130.3 7.1 9.7e-38 129.8 4.9 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|284161351|ref|YP_003399974.1| - 0.00013 21.5 1.5 0.00045 19.7 1.0 1.9 1 1 0 1 1 1 1 SPFH domain-Band 7 family OmpH PF03938.9 gi|284161351|ref|YP_003399974.1| - 0.0009 19.2 3.8 0.0015 18.5 2.6 1.2 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) SRP54 PF00448.17 gi|284161352|ref|YP_003399975.1| - 1.4e-72 243.2 0.4 1.4e-72 243.2 0.3 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|284161352|ref|YP_003399975.1| - 3.1e-10 39.9 8.5 3.1e-10 39.9 5.9 3.3 3 1 0 3 3 3 1 SRP54-type protein, helical bundle domain AAA_33 PF13671.1 gi|284161352|ref|YP_003399975.1| - 3.1e-05 23.8 0.1 9.4e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|284161352|ref|YP_003399975.1| - 5.5e-05 22.8 0.0 0.00013 21.6 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|284161352|ref|YP_003399975.1| - 0.00029 21.6 0.1 0.00029 21.6 0.1 2.5 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|284161352|ref|YP_003399975.1| - 0.00032 20.4 0.5 0.00032 20.4 0.3 3.1 2 2 1 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|284161352|ref|YP_003399975.1| - 0.0004 20.5 2.7 0.0054 16.8 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|284161352|ref|YP_003399975.1| - 0.00052 20.0 0.3 0.002 18.1 0.1 2.2 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|284161352|ref|YP_003399975.1| - 0.00053 19.1 0.1 0.00053 19.1 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_30 PF13604.1 gi|284161352|ref|YP_003399975.1| - 0.00074 19.1 4.5 0.0021 17.6 0.2 2.4 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|284161352|ref|YP_003399975.1| - 0.00099 19.3 0.8 0.00099 19.3 0.6 2.8 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|284161352|ref|YP_003399975.1| - 0.0014 18.2 0.0 0.0033 17.1 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_16 PF13191.1 gi|284161352|ref|YP_003399975.1| - 0.0016 18.4 0.9 0.0058 16.6 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain DUF2075 PF09848.4 gi|284161352|ref|YP_003399975.1| - 0.0018 17.3 0.2 0.0018 17.3 0.2 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Thymidylate_kin PF02223.12 gi|284161352|ref|YP_003399975.1| - 0.003 16.9 7.0 0.0052 16.1 0.1 3.4 4 0 0 4 4 4 1 Thymidylate kinase ResIII PF04851.10 gi|284161352|ref|YP_003399975.1| - 0.0056 16.5 0.1 0.0056 16.5 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Fe-ADH PF00465.14 gi|284161352|ref|YP_003399975.1| - 0.0094 14.6 0.8 2.6 6.5 0.1 2.6 1 1 1 2 2 2 2 Iron-containing alcohol dehydrogenase VirC1 PF07015.6 gi|284161352|ref|YP_003399975.1| - 0.011 14.7 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_24 PF13479.1 gi|284161352|ref|YP_003399975.1| - 0.021 14.4 0.8 0.027 14.0 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|284161352|ref|YP_003399975.1| - 0.029 13.7 0.2 0.052 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain DUF853 PF05872.7 gi|284161352|ref|YP_003399975.1| - 0.04 12.2 2.8 0.37 9.1 0.0 2.8 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.22 gi|284161352|ref|YP_003399975.1| - 0.045 14.0 1.0 0.35 11.1 0.0 2.3 2 0 0 2 2 2 0 ABC transporter Pox_A32 PF04665.7 gi|284161352|ref|YP_003399975.1| - 0.068 12.4 0.2 0.29 10.4 0.0 2.0 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_18 PF13238.1 gi|284161352|ref|YP_003399975.1| - 0.11 12.7 0.2 0.11 12.7 0.1 2.9 2 2 0 2 2 2 0 AAA domain Miro PF08477.8 gi|284161352|ref|YP_003399975.1| - 0.5 10.8 5.5 0.44 11.0 0.1 3.0 2 2 0 2 2 2 0 Miro-like protein CbiA PF01656.18 gi|284161352|ref|YP_003399975.1| - 1.5 8.2 11.2 0.065 12.6 2.3 2.6 2 2 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Prefoldin PF02996.12 gi|284161353|ref|YP_003399976.1| - 2.3e-24 85.3 8.4 2.9e-24 85.0 5.9 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|284161353|ref|YP_003399976.1| - 2.9e-05 23.7 14.9 0.0052 16.5 4.8 2.3 1 1 1 2 2 2 2 Prefoldin subunit TOBE_2 PF08402.5 gi|284161353|ref|YP_003399976.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 TOBE domain DED PF01335.16 gi|284161353|ref|YP_003399976.1| - 0.17 12.0 1.6 0.22 11.6 0.1 2.0 2 0 0 2 2 2 0 Death effector domain Tropomyosin_1 PF12718.2 gi|284161353|ref|YP_003399976.1| - 0.2 11.5 10.4 1.2 9.0 0.6 2.2 2 0 0 2 2 2 0 Tropomyosin like LOH1CR12 PF10158.4 gi|284161353|ref|YP_003399976.1| - 0.25 11.1 4.1 2.7 7.7 0.3 2.2 2 0 0 2 2 2 0 Tumour suppressor protein Baculo_PEP_C PF04513.7 gi|284161353|ref|YP_003399976.1| - 0.26 11.0 3.3 5 6.9 2.3 2.2 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Prefoldin_3 PF13758.1 gi|284161353|ref|YP_003399976.1| - 0.37 10.5 8.4 0.49 10.1 1.2 2.3 2 0 0 2 2 2 0 Prefoldin subunit DUF1664 PF07889.7 gi|284161353|ref|YP_003399976.1| - 0.71 9.6 7.8 1.5 8.6 1.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|284161353|ref|YP_003399976.1| - 1.3 7.5 12.0 1.5 7.3 2.4 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein PspB PF06667.7 gi|284161353|ref|YP_003399976.1| - 1.4 8.8 3.9 8.2 6.4 0.8 2.4 2 0 0 2 2 2 0 Phage shock protein B SlyX PF04102.7 gi|284161353|ref|YP_003399976.1| - 1.7 9.0 8.5 3.9 7.9 0.5 2.4 2 0 0 2 2 2 0 SlyX Fib_alpha PF08702.5 gi|284161353|ref|YP_003399976.1| - 2.1 8.4 8.4 2.7 8.1 1.3 2.2 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.4 gi|284161353|ref|YP_003399976.1| - 2.3 8.0 15.3 1.5 8.6 1.6 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tex_N PF09371.5 gi|284161353|ref|YP_003399976.1| - 3.7 6.8 9.7 1.2 8.3 0.9 2.1 2 0 0 2 2 2 0 Tex-like protein N-terminal domain DUF972 PF06156.8 gi|284161353|ref|YP_003399976.1| - 4.3 7.7 10.6 3.4 8.0 3.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Spectrin PF00435.16 gi|284161353|ref|YP_003399976.1| - 4.8 7.5 10.4 5.1 7.4 0.4 2.2 2 0 0 2 2 2 0 Spectrin repeat GP41 PF00517.12 gi|284161353|ref|YP_003399976.1| - 9.6 5.7 10.6 8.6 5.8 0.6 2.1 2 0 0 2 2 2 0 Retroviral envelope protein Ribosomal_L18ae PF01775.12 gi|284161354|ref|YP_003399977.1| - 3.9e-09 36.4 0.1 4.1e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Acyl_transf_2 PF02273.10 gi|284161354|ref|YP_003399977.1| - 0.031 13.2 0.0 0.031 13.2 0.0 1.0 1 0 0 1 1 1 0 Acyl transferase eIF-6 PF01912.13 gi|284161355|ref|YP_003399978.1| - 1.2e-61 207.2 10.4 1.4e-61 207.1 7.2 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|284161356|ref|YP_003399979.1| - 2.8e-23 81.3 3.0 4.2e-23 80.8 2.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|284161357|ref|YP_003399980.1| - 4.3e-16 58.1 12.4 4.9e-16 57.9 8.6 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.15 gi|284161358|ref|YP_003399981.1| - 2.7e-29 101.2 16.3 3.3e-29 100.9 11.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.6 gi|284161358|ref|YP_003399981.1| - 0.0038 16.2 11.5 0.004 16.1 8.0 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 AIP3 PF03915.8 gi|284161358|ref|YP_003399981.1| - 0.088 11.7 6.2 0.093 11.6 4.3 1.0 1 0 0 1 1 1 0 Actin interacting protein 3 YniB PF14002.1 gi|284161358|ref|YP_003399981.1| - 4.3 6.7 5.8 15 4.9 2.1 2.0 2 0 0 2 2 2 0 YniB-like protein DNA_pol3_a_NII PF11490.3 gi|284161358|ref|YP_003399981.1| - 5.4 6.6 11.0 76 2.9 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase III polC-type N-terminus II Ribosomal_S19e PF01090.14 gi|284161359|ref|YP_003399982.1| - 1.2e-62 209.4 0.1 1.3e-62 209.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_45 PF14947.1 gi|284161359|ref|YP_003399982.1| - 0.00011 21.9 0.0 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix RuvB_C PF05491.8 gi|284161359|ref|YP_003399982.1| - 0.00014 21.4 0.0 0.011 15.3 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB C-terminus HemN_C PF06969.11 gi|284161359|ref|YP_003399982.1| - 0.014 15.4 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_12 PF08461.5 gi|284161359|ref|YP_003399982.1| - 0.045 13.4 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|284161359|ref|YP_003399982.1| - 0.073 12.7 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CRS1_YhbY PF01985.16 gi|284161360|ref|YP_003399983.1| - 4.7e-16 58.5 0.8 5.5e-16 58.3 0.6 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_S19e PF01090.14 gi|284161360|ref|YP_003399983.1| - 0.033 13.5 0.2 0.039 13.3 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein S19e Bac_DNA_binding PF00216.16 gi|284161360|ref|YP_003399983.1| - 0.083 12.9 0.3 2.1 8.4 0.0 2.1 1 1 1 2 2 2 0 Bacterial DNA-binding protein Lactamase_B PF00753.22 gi|284161361|ref|YP_003399984.1| - 3.9e-13 49.4 0.2 9.1e-13 48.2 0.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284161361|ref|YP_003399984.1| - 2.6e-05 23.8 0.1 4.1e-05 23.2 0.1 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|284161362|ref|YP_003399985.1| - 1.6e-28 99.6 0.1 1.9e-28 99.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284161362|ref|YP_003399985.1| - 2.6e-17 63.1 0.0 3.3e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|284161362|ref|YP_003399985.1| - 4.7e-09 36.1 0.0 7.7e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF4147 PF13660.1 gi|284161363|ref|YP_003399986.1| - 5.3e-87 290.8 0.0 7.1e-87 290.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|284161363|ref|YP_003399986.1| - 5.7e-37 126.1 0.3 1.2e-36 125.0 0.2 1.6 1 0 0 1 1 1 1 MOFRL family CBFD_NFYB_HMF PF00808.18 gi|284161366|ref|YP_003399989.1| - 5.1e-19 68.0 4.1 5.8e-19 67.9 2.8 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|284161366|ref|YP_003399989.1| - 1.6e-11 44.1 1.4 1.8e-11 43.9 1.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|284161366|ref|YP_003399989.1| - 0.005 16.9 0.1 0.0065 16.6 0.0 1.2 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID-18kDa PF02269.11 gi|284161366|ref|YP_003399989.1| - 0.03 14.1 0.1 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit LacI PF00356.16 gi|284161366|ref|YP_003399989.1| - 0.11 12.1 0.7 0.21 11.2 0.2 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, lacI family TFIIB PF00382.14 gi|284161366|ref|YP_003399989.1| - 0.11 12.3 1.3 0.2 11.4 0.8 1.6 1 1 1 2 2 2 0 Transcription factor TFIIB repeat TFIID-31kDa PF02291.10 gi|284161366|ref|YP_003399989.1| - 0.12 12.1 0.1 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit NolV PF06635.7 gi|284161366|ref|YP_003399989.1| - 0.13 11.3 3.3 0.14 11.2 2.3 1.0 1 0 0 1 1 1 0 Nodulation protein NolV GnsAB PF08178.6 gi|284161366|ref|YP_003399989.1| - 0.24 11.0 1.7 0.35 10.5 1.2 1.4 1 0 0 1 1 1 0 GnsA/GnsB family PCP_red PF08369.5 gi|284161366|ref|YP_003399989.1| - 3.3 7.6 7.4 5.3 6.9 2.4 2.8 1 1 1 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit CBS PF00571.23 gi|284161367|ref|YP_003399990.1| - 2.5e-34 116.7 12.1 7e-15 54.5 0.9 4.6 4 2 0 4 4 4 3 CBS domain DUF4163 PF13739.1 gi|284161367|ref|YP_003399990.1| - 0.019 15.7 2.6 0.034 14.9 1.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4163) Iso_dh PF00180.15 gi|284161368|ref|YP_003399991.1| - 2.5e-112 375.2 0.0 3.1e-112 374.9 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Nol1_Nop2_Fmu PF01189.12 gi|284161369|ref|YP_003399992.1| - 3.5e-59 200.5 0.0 4.4e-59 200.1 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|284161369|ref|YP_003399992.1| - 1.1e-07 31.5 0.1 2.9e-07 30.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|284161369|ref|YP_003399992.1| - 1.5e-06 28.3 0.0 6.6e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_18 PF12847.2 gi|284161369|ref|YP_003399992.1| - 0.00026 21.5 0.0 0.0005 20.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284161369|ref|YP_003399992.1| - 0.00061 19.2 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|284161369|ref|YP_003399992.1| - 0.0044 16.1 0.0 0.009 15.1 0.0 1.5 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.11 gi|284161369|ref|YP_003399992.1| - 0.0098 14.9 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_15 PF09445.5 gi|284161369|ref|YP_003399992.1| - 0.071 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF1646 PF07854.7 gi|284161370|ref|YP_003399993.1| - 4.7e-139 463.3 31.7 5.9e-139 463.0 22.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) Fumarate_red_C PF02300.12 gi|284161370|ref|YP_003399993.1| - 1.8 8.4 9.2 1.9 8.3 3.1 3.1 2 1 1 3 3 3 0 Fumarate reductase subunit C Isochorismatase PF00857.15 gi|284161371|ref|YP_003399994.1| - 6.5e-24 84.8 0.8 1.4e-22 80.4 0.6 2.0 1 1 0 1 1 1 1 Isochorismatase family AMP-binding PF00501.23 gi|284161372|ref|YP_003399995.1| - 1.9e-104 349.3 0.0 2.3e-104 349.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284161372|ref|YP_003399995.1| - 1e-24 87.2 0.6 2.7e-24 85.8 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AAA_5 PF07728.9 gi|284161372|ref|YP_003399995.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Thy1 PF02511.10 gi|284161373|ref|YP_003399996.1| - 1.1e-48 165.0 0.3 1.5e-48 164.7 0.2 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein ChaB PF06150.7 gi|284161373|ref|YP_003399996.1| - 0.036 13.8 0.2 0.12 12.2 0.1 1.9 1 0 0 1 1 1 0 ChaB Coat_F PF07875.7 gi|284161373|ref|YP_003399996.1| - 0.042 13.9 0.0 0.18 11.9 0.0 2.0 2 0 0 2 2 2 0 Coat F domain TetR PF13972.1 gi|284161373|ref|YP_003399996.1| - 0.054 12.9 0.0 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial transcriptional repressor 2TM PF13239.1 gi|284161374|ref|YP_003399997.1| - 0.13 12.3 4.9 0.16 12.0 3.4 1.2 1 0 0 1 1 1 0 2TM domain Tic20 PF09685.5 gi|284161374|ref|YP_003399997.1| - 0.39 10.7 6.9 0.46 10.4 4.8 1.1 1 0 0 1 1 1 0 Tic20-like protein DUF3784 PF12650.2 gi|284161374|ref|YP_003399997.1| - 1.8 8.5 6.3 2.2 8.2 4.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) MauE PF07291.6 gi|284161375|ref|YP_003399998.1| - 0.028 14.0 0.2 0.029 13.9 0.1 1.2 1 0 0 1 1 1 0 Methylamine utilisation protein MauE Spore_permease PF03845.8 gi|284161375|ref|YP_003399998.1| - 0.068 11.8 4.2 0.08 11.5 2.9 1.1 1 0 0 1 1 1 0 Spore germination protein PUB PF09409.5 gi|284161376|ref|YP_003399999.1| - 0.12 12.1 0.4 0.43 10.3 0.0 2.1 2 1 0 2 2 2 0 PUB domain SWIM PF04434.12 gi|284161377|ref|YP_003400000.1| - 8.3e-09 34.7 0.2 1.4e-08 34.0 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger Lon_C PF05362.8 gi|284161378|ref|YP_003400001.1| - 7.4e-11 41.7 0.1 1.5e-10 40.7 0.1 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF4398 PF14346.1 gi|284161378|ref|YP_003400001.1| - 4.3e-06 26.7 6.9 0.14 12.2 0.5 3.5 3 0 0 3 3 3 3 Domain of unknown function (DUF4398) Peptidase_C71 PF12386.3 gi|284161378|ref|YP_003400001.1| - 0.037 13.4 0.2 0.037 13.4 0.1 1.9 2 0 0 2 2 2 0 Pseudomurein endo-isopeptidase Pei Nnf1 PF03980.9 gi|284161378|ref|YP_003400001.1| - 0.09 12.7 3.8 0.07 13.1 1.4 1.7 2 0 0 2 2 2 0 Nnf1 ArsR PF09824.4 gi|284161378|ref|YP_003400001.1| - 0.27 10.5 4.2 2.2 7.5 0.1 2.8 2 1 1 3 3 3 0 ArsR transcriptional regulator HEPN PF05168.9 gi|284161378|ref|YP_003400001.1| - 0.32 10.8 0.0 0.32 10.8 0.0 3.6 4 0 0 4 4 4 0 HEPN domain DUF92 PF01940.11 gi|284161379|ref|YP_003400002.1| - 7.2e-65 218.3 15.7 7.2e-65 218.3 10.9 2.4 2 1 0 2 2 2 1 Integral membrane protein DUF92 DUF3152 PF11350.3 gi|284161379|ref|YP_003400002.1| - 0.22 11.0 0.0 0.39 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3152) Prenyltransf PF01255.14 gi|284161380|ref|YP_003400003.1| - 9.1e-23 80.5 0.0 3.9e-20 71.9 0.0 2.2 1 1 1 2 2 2 2 Putative undecaprenyl diphosphate synthase PAH PF02671.16 gi|284161380|ref|YP_003400003.1| - 0.13 11.9 0.2 0.63 9.7 0.0 2.3 2 0 0 2 2 2 0 Paired amphipathic helix repeat TGT_C2 PF14810.1 gi|284161381|ref|YP_003400004.1| - 1.2e-33 114.7 0.1 3.8e-33 113.1 0.0 1.8 2 1 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|284161381|ref|YP_003400004.1| - 8.8e-20 70.2 2.0 1.3e-19 69.6 1.4 1.3 1 0 0 1 1 1 1 PUA domain Pribosyltran PF00156.22 gi|284161381|ref|YP_003400004.1| - 0.0075 15.9 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain TPR_12 PF13424.1 gi|284161382|ref|YP_003400005.1| - 3.3e-27 94.2 9.3 3.7e-11 42.8 2.4 3.4 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|284161382|ref|YP_003400005.1| - 1.2e-21 75.9 3.5 1.5e-07 31.1 0.0 4.6 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|284161382|ref|YP_003400005.1| - 4.4e-15 54.2 11.7 0.0052 16.5 0.1 5.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|284161382|ref|YP_003400005.1| - 1e-14 53.0 16.8 4.2e-05 23.0 0.3 5.7 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|284161382|ref|YP_003400005.1| - 6.7e-14 50.8 14.2 0.013 15.1 0.4 5.6 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|284161382|ref|YP_003400005.1| - 3.6e-09 36.4 1.9 0.034 14.7 0.0 5.2 3 1 2 5 5 5 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|284161382|ref|YP_003400005.1| - 7.6e-09 34.7 9.5 0.25 11.2 0.4 5.1 4 1 0 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|284161382|ref|YP_003400005.1| - 1.9e-07 30.6 16.4 0.00025 20.6 1.1 3.9 1 1 4 5 5 5 4 TPR repeat DUF2225 PF09986.4 gi|284161382|ref|YP_003400005.1| - 7.8e-05 22.2 3.9 7.8e-05 22.2 2.7 3.2 1 1 2 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_19 PF14559.1 gi|284161382|ref|YP_003400005.1| - 0.0001 22.5 9.5 0.12 12.7 0.1 4.4 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|284161382|ref|YP_003400005.1| - 0.0027 18.3 5.1 0.12 13.0 0.6 3.8 1 1 2 4 4 4 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|284161382|ref|YP_003400005.1| - 0.0028 17.7 4.2 12 6.3 0.1 5.0 5 1 0 5 5 5 0 Tetratricopeptide repeat HMG_box PF00505.14 gi|284161382|ref|YP_003400005.1| - 0.0042 17.3 4.4 0.047 13.9 0.4 2.8 2 0 0 2 2 2 1 HMG (high mobility group) box N6_N4_Mtase PF01555.13 gi|284161382|ref|YP_003400005.1| - 0.011 15.2 0.2 0.02 14.3 0.1 1.4 1 1 0 1 1 1 0 DNA methylase Glyco_hydro_88 PF07470.8 gi|284161382|ref|YP_003400005.1| - 0.042 12.8 1.6 0.074 12.0 1.1 1.3 1 0 0 1 1 1 0 Glycosyl Hydrolase Family 88 TPR_6 PF13174.1 gi|284161382|ref|YP_003400005.1| - 0.14 12.6 8.2 2.3 8.8 0.0 5.2 6 0 0 6 6 5 0 Tetratricopeptide repeat Sel1 PF08238.7 gi|284161382|ref|YP_003400005.1| - 0.56 10.9 6.1 2.3 8.9 0.1 4.1 5 0 0 5 5 4 0 Sel1 repeat SPX PF03105.14 gi|284161382|ref|YP_003400005.1| - 6.8 6.3 7.2 1.8 8.2 0.6 2.2 2 0 0 2 2 2 0 SPX domain FAD_binding_3 PF01494.14 gi|284161383|ref|YP_003400006.1| - 3.2e-12 46.1 0.1 2.7e-06 26.7 0.0 3.1 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|284161383|ref|YP_003400006.1| - 2.4e-07 30.0 0.0 0.004 16.1 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|284161383|ref|YP_003400006.1| - 2.2e-06 26.6 0.0 0.011 14.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|284161383|ref|YP_003400006.1| - 0.00045 20.1 0.1 0.0009 19.2 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|284161383|ref|YP_003400006.1| - 0.0019 18.0 0.1 0.0052 16.6 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284161383|ref|YP_003400006.1| - 0.02 13.3 0.1 0.028 12.9 0.1 1.2 1 0 0 1 1 1 0 HI0933-like protein GIDA PF01134.17 gi|284161383|ref|YP_003400006.1| - 0.039 12.8 0.1 0.062 12.1 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A DAO PF01266.19 gi|284161383|ref|YP_003400006.1| - 0.058 12.3 0.0 0.15 10.9 0.0 1.7 2 1 0 2 2 2 0 FAD dependent oxidoreductase SE PF08491.5 gi|284161383|ref|YP_003400006.1| - 0.066 12.0 0.0 0.23 10.2 0.0 1.8 2 0 0 2 2 2 0 Squalene epoxidase Pyr_redox PF00070.22 gi|284161383|ref|YP_003400006.1| - 0.1 13.0 0.1 0.6 10.5 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284161383|ref|YP_003400006.1| - 0.24 10.1 0.2 0.39 9.5 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain Flavin_Reduct PF01613.13 gi|284161384|ref|YP_003400007.1| - 7.2e-27 94.1 0.0 8.9e-27 93.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DAP_epimerase PF01678.14 gi|284161385|ref|YP_003400008.1| - 6.9e-62 206.7 2.9 5.8e-36 123.0 0.1 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|284161385|ref|YP_003400008.1| - 0.0087 14.9 0.1 0.041 12.7 0.0 1.8 2 0 0 2 2 2 1 Proline racemase Cpn60_TCP1 PF00118.19 gi|284161386|ref|YP_003400009.1| - 1.1e-177 591.5 12.1 1.3e-177 591.3 8.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family HK97-gp10_like PF04883.7 gi|284161386|ref|YP_003400009.1| - 0.61 11.0 10.6 16 6.4 0.3 4.6 3 1 0 3 3 3 0 Bacteriophage HK97-gp10, putative tail-component TIM PF00121.13 gi|284161387|ref|YP_003400010.1| - 4.2e-31 107.8 0.1 1.1e-29 103.1 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|284161387|ref|YP_003400010.1| - 1.2e-05 24.5 0.0 1.9e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|284161387|ref|YP_003400010.1| - 0.00014 21.1 0.0 0.0002 20.6 0.0 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|284161387|ref|YP_003400010.1| - 0.0036 16.2 0.1 0.0059 15.4 0.0 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|284161387|ref|YP_003400010.1| - 0.0072 15.6 0.0 0.024 13.9 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|284161387|ref|YP_003400010.1| - 0.01 14.7 0.3 0.025 13.4 0.2 1.6 1 1 0 1 1 1 0 Conserved region in glutamate synthase IGPS PF00218.16 gi|284161387|ref|YP_003400010.1| - 0.015 14.3 0.0 0.019 14.0 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Glyco_hydro_4 PF02056.11 gi|284161387|ref|YP_003400010.1| - 0.058 12.6 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase DUF3940 PF13076.1 gi|284161387|ref|YP_003400010.1| - 0.11 12.0 0.1 0.4 10.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3940) PfkB PF00294.19 gi|284161388|ref|YP_003400011.1| - 1.6e-65 221.2 0.0 1.9e-65 220.9 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|284161388|ref|YP_003400011.1| - 0.0018 17.5 0.0 0.0028 16.8 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Semialdhyde_dh PF01118.19 gi|284161389|ref|YP_003400012.1| - 1.3e-36 125.5 0.0 2.1e-36 124.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|284161389|ref|YP_003400012.1| - 5.8e-12 45.8 0.0 1.3e-11 44.7 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|284161389|ref|YP_003400012.1| - 0.0021 17.9 0.0 0.0077 16.1 0.0 2.0 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|284161389|ref|YP_003400012.1| - 0.0093 16.4 0.0 0.017 15.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|284161389|ref|YP_003400012.1| - 0.023 15.1 0.0 0.046 14.1 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent OrfB_Zn_ribbon PF07282.6 gi|284161391|ref|YP_003400014.1| - 6.3e-23 80.2 0.6 6.3e-23 80.2 0.4 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|284161391|ref|YP_003400014.1| - 4e-05 23.1 4.1 4e-05 23.1 2.8 1.8 1 1 1 2 2 2 1 Probable transposase TF_Zn_Ribbon PF08271.7 gi|284161391|ref|YP_003400014.1| - 0.0044 16.3 1.8 0.0044 16.3 1.2 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Baculo_ME53 PF06061.6 gi|284161391|ref|YP_003400014.1| - 0.0062 15.5 0.2 0.0062 15.5 0.1 2.1 2 0 0 2 2 2 1 Baculoviridae ME53 DZR PF12773.2 gi|284161391|ref|YP_003400014.1| - 0.011 15.5 0.4 0.024 14.4 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon OmpH PF03938.9 gi|284161391|ref|YP_003400014.1| - 0.017 15.0 0.1 0.13 12.2 0.1 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Spt4 PF06093.8 gi|284161391|ref|YP_003400014.1| - 0.039 13.8 1.3 0.19 11.6 0.9 2.2 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger PhnA_Zn_Ribbon PF08274.7 gi|284161391|ref|YP_003400014.1| - 0.046 13.5 0.2 0.092 12.5 0.2 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon NAD_binding_5 PF07994.7 gi|284161391|ref|YP_003400014.1| - 0.22 11.0 2.7 0.27 10.7 1.2 1.7 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase Integrase_Zn PF02022.14 gi|284161391|ref|YP_003400014.1| - 0.33 10.4 1.6 3.3 7.2 0.0 2.4 2 0 0 2 2 2 0 Integrase Zinc binding domain zf-ribbon_3 PF13248.1 gi|284161391|ref|YP_003400014.1| - 0.58 9.4 4.2 2.6 7.3 3.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|284161391|ref|YP_003400014.1| - 1.4 8.8 3.3 30 4.5 0.4 2.5 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 ATP_bind_1 PF03029.12 gi|284161392|ref|YP_003400015.1| - 0.044 13.3 0.3 0.044 13.3 0.2 1.0 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DNA_pol_B PF00136.16 gi|284161393|ref|YP_003400016.1| - 6.1e-106 354.9 1.2 6.7e-106 354.8 0.3 1.4 2 0 0 2 2 2 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|284161393|ref|YP_003400016.1| - 3.4e-33 114.8 0.6 2e-16 59.8 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|284161393|ref|YP_003400016.1| - 2e-11 43.8 0.0 3.9e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|284161393|ref|YP_003400016.1| - 1.5e-10 41.1 0.0 3.3e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily Aminotran_4 PF01063.14 gi|284161394|ref|YP_003400017.1| - 1.8e-51 174.8 0.0 2.1e-51 174.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV ACT PF01842.20 gi|284161395|ref|YP_003400018.1| - 8.9e-07 28.2 0.4 2.2e-06 26.9 0.1 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|284161395|ref|YP_003400018.1| - 0.029 14.7 0.1 0.073 13.4 0.1 1.8 1 0 0 1 1 1 0 ACT domain Pico_P2B PF01552.12 gi|284161395|ref|YP_003400018.1| - 0.079 13.1 0.1 0.18 11.9 0.1 1.7 1 0 0 1 1 1 0 Picornavirus 2B protein Homoserine_dh PF00742.14 gi|284161396|ref|YP_003400019.1| - 1.1e-56 191.3 0.1 2.4e-56 190.2 0.0 1.6 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|284161396|ref|YP_003400019.1| - 5.2e-12 46.1 0.0 9.9e-12 45.2 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|284161396|ref|YP_003400019.1| - 6e-07 29.2 0.0 1.3e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Gp_dh_N PF00044.19 gi|284161396|ref|YP_003400019.1| - 0.012 15.5 0.3 0.042 13.8 0.2 2.0 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|284161396|ref|YP_003400019.1| - 0.013 15.9 0.0 0.045 14.2 0.0 1.9 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|284161396|ref|YP_003400019.1| - 0.031 13.2 0.1 0.071 12.0 0.1 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|284161396|ref|YP_003400019.1| - 0.089 12.7 0.1 0.23 11.4 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain Arc_PepC_II PF06847.6 gi|284161397|ref|YP_003400020.1| - 8.5e-17 61.3 0.2 2.4e-16 59.9 0.1 1.7 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|284161397|ref|YP_003400020.1| - 7.8e-12 45.2 4.1 7.8e-12 45.2 2.9 1.9 2 1 0 2 2 2 1 Type IV leader peptidase family DUF2545 PF10810.3 gi|284161397|ref|YP_003400020.1| - 1.5 9.2 10.0 1.3 9.5 3.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2545) PGM_PMM_I PF02878.11 gi|284161398|ref|YP_003400021.1| - 2e-39 134.2 0.0 3.8e-39 133.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|284161398|ref|YP_003400021.1| - 5.4e-30 103.7 0.1 1.3e-29 102.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|284161398|ref|YP_003400021.1| - 3.1e-27 94.8 0.0 5.7e-27 93.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|284161398|ref|YP_003400021.1| - 2.4e-13 49.8 0.1 1.3e-12 47.4 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain AAA_18 PF13238.1 gi|284161399|ref|YP_003400022.1| - 4.7e-24 85.1 0.5 7.4e-24 84.5 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284161399|ref|YP_003400022.1| - 8.6e-14 52.3 0.5 1.9e-13 51.3 0.3 1.7 1 1 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|284161399|ref|YP_003400022.1| - 1.9e-05 24.1 0.2 0.0034 16.8 0.0 2.8 1 1 2 3 3 3 1 Dephospho-CoA kinase AAA_28 PF13521.1 gi|284161399|ref|YP_003400022.1| - 3.5e-05 23.8 0.0 7.5e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284161399|ref|YP_003400022.1| - 3.6e-05 23.6 0.1 0.00013 21.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|284161399|ref|YP_003400022.1| - 0.00032 20.4 1.2 0.25 11.0 0.1 2.6 1 1 1 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B UPF0180 PF03698.8 gi|284161399|ref|YP_003400022.1| - 0.0016 18.2 0.8 1.7 8.5 0.0 3.1 2 2 0 2 2 2 1 Uncharacterised protein family (UPF0180) CPT PF07931.7 gi|284161399|ref|YP_003400022.1| - 0.0032 17.0 0.0 2 8.0 0.0 2.3 2 0 0 2 2 2 2 Chloramphenicol phosphotransferase-like protein AAA PF00004.24 gi|284161399|ref|YP_003400022.1| - 0.0042 17.2 1.3 0.028 14.5 0.9 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|284161399|ref|YP_003400022.1| - 0.0045 16.2 0.0 0.0075 15.5 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Thymidylate_kin PF02223.12 gi|284161399|ref|YP_003400022.1| - 0.0047 16.3 0.3 0.6 9.4 0.0 2.5 2 1 0 3 3 3 1 Thymidylate kinase dNK PF01712.14 gi|284161399|ref|YP_003400022.1| - 0.0065 16.3 0.1 0.0084 16.0 0.1 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase ArgK PF03308.11 gi|284161399|ref|YP_003400022.1| - 0.01 14.6 0.6 0.024 13.4 0.1 1.8 2 0 0 2 2 2 1 ArgK protein AAA_22 PF13401.1 gi|284161399|ref|YP_003400022.1| - 0.014 15.5 0.2 0.024 14.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATP_bind_2 PF03668.10 gi|284161399|ref|YP_003400022.1| - 0.054 12.5 0.9 0.18 10.8 0.6 1.8 1 1 0 1 1 1 0 P-loop ATPase protein family AAA_16 PF13191.1 gi|284161399|ref|YP_003400022.1| - 0.057 13.3 1.2 0.19 11.7 0.8 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.9 gi|284161399|ref|YP_003400022.1| - 0.081 12.6 0.7 0.45 10.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|284161399|ref|YP_003400022.1| - 0.12 11.5 0.3 0.34 10.0 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|284161399|ref|YP_003400022.1| - 0.12 12.0 3.4 0.34 10.5 2.3 2.1 1 1 0 1 1 1 0 NTPase MMR_HSR1 PF01926.18 gi|284161399|ref|YP_003400022.1| - 0.13 12.2 0.9 0.39 10.7 0.7 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase FliH PF02108.11 gi|284161399|ref|YP_003400022.1| - 0.23 11.3 2.3 0.84 9.5 0.4 2.1 1 1 1 2 2 2 0 Flagellar assembly protein FliH Metallophos_2 PF12850.2 gi|284161400|ref|YP_003400023.1| - 5.5e-09 36.0 0.6 1e-08 35.2 0.4 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284161400|ref|YP_003400023.1| - 5.9e-06 25.8 1.4 2.3e-05 23.8 1.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HAD PF12710.2 gi|284161400|ref|YP_003400023.1| - 0.086 12.9 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF46 PF01864.12 gi|284161401|ref|YP_003400024.1| - 6.4e-69 231.3 9.0 7.1e-69 231.1 6.2 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|284161401|ref|YP_003400024.1| - 2.2e-07 30.7 5.9 2.2e-07 30.7 4.1 1.4 1 1 0 1 1 1 1 Cytidylyltransferase family V_ATPase_I PF01496.14 gi|284161401|ref|YP_003400024.1| - 0.087 10.6 0.1 0.12 10.2 0.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Ribosomal_S8e PF01201.17 gi|284161402|ref|YP_003400025.1| - 4.9e-39 133.4 3.0 5.4e-39 133.3 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Topoisom_bac PF01131.15 gi|284161403|ref|YP_003400026.1| - 6.5e-112 374.2 3.2 8.4e-112 373.9 2.2 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|284161403|ref|YP_003400026.1| - 1.8e-17 63.1 2.0 1.1e-16 60.6 0.1 2.6 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|284161403|ref|YP_003400026.1| - 2.2e-13 49.4 3.5 6.2e-13 48.0 2.4 1.8 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Toprim_4 PF13662.1 gi|284161403|ref|YP_003400026.1| - 0.052 13.5 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 Toprim domain ThiS PF02597.15 gi|284161404|ref|YP_003400027.1| - 2.8e-11 43.6 0.1 3.3e-11 43.4 0.1 1.1 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|284161404|ref|YP_003400027.1| - 1.6e-05 24.6 0.0 1.9e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Bacteriophage lambda tail assembly protein I AAA_10 PF12846.2 gi|284161404|ref|YP_003400027.1| - 0.029 13.7 0.0 0.032 13.6 0.0 1.0 1 0 0 1 1 1 0 AAA-like domain DUF2555 PF10742.4 gi|284161404|ref|YP_003400027.1| - 0.052 13.1 0.3 0.089 12.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2555) DRTGG PF07085.7 gi|284161405|ref|YP_003400028.1| - 1.3e-27 95.4 0.1 3e-27 94.2 0.1 1.6 1 0 0 1 1 1 1 DRTGG domain AAA_26 PF13500.1 gi|284161405|ref|YP_003400028.1| - 4e-24 85.3 0.0 7.8e-24 84.3 0.0 1.5 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|284161405|ref|YP_003400028.1| - 1.4e-06 27.8 0.1 2.5e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|284161405|ref|YP_003400028.1| - 0.00059 19.5 0.1 0.016 14.8 0.0 2.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Hpr_kinase_N PF02603.11 gi|284161405|ref|YP_003400028.1| - 0.0031 17.1 0.1 0.0098 15.5 0.0 1.8 2 0 0 2 2 2 1 HPr Serine kinase N terminus ATP-grasp_5 PF13549.1 gi|284161406|ref|YP_003400029.1| - 9.5e-74 247.3 1.1 2.7e-73 245.8 0.6 1.8 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|284161406|ref|YP_003400029.1| - 7.8e-55 184.2 1.2 2.4e-53 179.4 0.1 2.9 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|284161406|ref|YP_003400029.1| - 2.7e-31 108.1 2.9 9.9e-30 103.0 0.3 3.4 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|284161406|ref|YP_003400029.1| - 5.1e-19 68.5 2.0 2e-18 66.6 0.2 2.9 3 0 0 3 3 3 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|284161406|ref|YP_003400029.1| - 6e-05 22.5 0.6 0.00013 21.3 0.4 1.6 1 0 0 1 1 1 1 ATP-grasp domain F420_oxidored PF03807.12 gi|284161406|ref|YP_003400029.1| - 0.00056 20.2 0.2 0.0078 16.6 0.1 2.9 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent CPSase_L_D2 PF02786.12 gi|284161406|ref|YP_003400029.1| - 0.005 16.1 0.1 0.012 14.9 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|284161406|ref|YP_003400029.1| - 0.0089 15.7 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Semialdhyde_dh PF01118.19 gi|284161406|ref|YP_003400029.1| - 0.01 16.0 0.1 0.23 11.7 0.1 2.9 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain ATP-grasp PF02222.17 gi|284161406|ref|YP_003400029.1| - 0.067 12.5 0.0 0.86 8.9 0.0 2.3 2 0 0 2 2 2 0 ATP-grasp domain CBS PF00571.23 gi|284161407|ref|YP_003400030.1| - 1.5e-24 85.4 4.8 4.1e-13 48.8 0.2 2.1 2 0 0 2 2 2 2 CBS domain DUF137 PF02006.11 gi|284161408|ref|YP_003400031.1| - 2.1e-71 238.9 2.0 2.8e-71 238.5 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 DUF2031 PF09592.5 gi|284161408|ref|YP_003400031.1| - 0.0042 16.2 2.1 0.0077 15.3 1.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2031) Ribosomal_L18e PF00828.14 gi|284161408|ref|YP_003400031.1| - 0.0058 17.0 0.4 0.018 15.4 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein L18e/L15 ApbE PF02424.10 gi|284161409|ref|YP_003400032.1| - 2.7e-22 79.3 0.0 3.6e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 ApbE family VWA_2 PF13519.1 gi|284161410|ref|YP_003400033.1| - 1.2e-08 35.2 0.0 5.9e-07 29.7 0.0 2.2 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|284161410|ref|YP_003400033.1| - 3.2e-07 29.7 0.4 1.3e-06 27.6 0.2 2.0 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|284161410|ref|YP_003400033.1| - 6.8e-07 29.1 0.0 7.9e-06 25.6 0.0 2.2 1 1 0 1 1 1 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|284161410|ref|YP_003400033.1| - 4.4e-05 23.4 0.0 9e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 VWA-like domain (DUF2201) CobT_C PF11775.3 gi|284161410|ref|YP_003400033.1| - 0.00033 20.1 0.1 0.00052 19.5 0.1 1.3 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA domain VWA_3 PF13768.1 gi|284161410|ref|YP_003400033.1| - 0.087 12.5 0.1 0.77 9.4 0.0 2.1 1 1 0 1 1 1 0 von Willebrand factor type A domain AAA_5 PF07728.9 gi|284161411|ref|YP_003400034.1| - 2.3e-12 46.8 0.0 7.7e-09 35.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|284161411|ref|YP_003400034.1| - 5.9e-10 38.6 0.0 0.001 18.2 0.0 2.4 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|284161411|ref|YP_003400034.1| - 6.2e-10 38.8 0.0 2.3e-06 27.2 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_PrkA PF08298.6 gi|284161411|ref|YP_003400034.1| - 5.9e-06 25.2 0.0 9.9e-06 24.4 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain MCM PF00493.18 gi|284161411|ref|YP_003400034.1| - 7.6e-06 24.9 0.0 0.00031 19.6 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family AAA_3 PF07726.6 gi|284161411|ref|YP_003400034.1| - 1.3e-05 24.8 0.0 0.00033 20.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|284161411|ref|YP_003400034.1| - 0.00026 21.0 0.0 0.00095 19.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|284161411|ref|YP_003400034.1| - 0.00037 20.6 0.1 0.0049 17.0 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|284161411|ref|YP_003400034.1| - 0.0018 18.2 0.0 0.5 10.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|284161411|ref|YP_003400034.1| - 0.011 14.4 0.8 0.016 13.9 0.1 1.6 2 0 0 2 2 2 0 TIP49 C-terminus AAA_17 PF13207.1 gi|284161411|ref|YP_003400034.1| - 0.027 15.3 1.1 0.32 11.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|284161411|ref|YP_003400034.1| - 0.029 13.8 0.0 0.071 12.5 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|284161411|ref|YP_003400034.1| - 0.035 12.9 0.0 0.058 12.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein UPF0079 PF02367.12 gi|284161411|ref|YP_003400034.1| - 0.06 12.9 0.1 0.15 11.6 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|284161411|ref|YP_003400034.1| - 0.12 12.1 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain DUF167 PF02594.11 gi|284161412|ref|YP_003400035.1| - 2.9e-22 78.3 0.0 3.8e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Glyco_hydro_67N PF03648.9 gi|284161412|ref|YP_003400035.1| - 0.065 13.2 0.0 0.07 13.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 67 N-terminus AIG2_2 PF13772.1 gi|284161413|ref|YP_003400036.1| - 6.5e-16 58.2 0.0 1.4e-15 57.1 0.0 1.5 2 0 0 2 2 2 1 AIG2-like family AIG2 PF06094.7 gi|284161413|ref|YP_003400036.1| - 1.4e-14 54.3 0.0 2e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 AIG2-like family DUF348 PF03990.9 gi|284161413|ref|YP_003400036.1| - 0.061 12.9 1.4 0.12 11.9 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF348) MoaC PF01967.16 gi|284161414|ref|YP_003400037.1| - 1.9e-52 176.4 2.2 2.2e-52 176.3 1.5 1.0 1 0 0 1 1 1 1 MoaC family zf-NADH-PPase PF09297.6 gi|284161415|ref|YP_003400038.1| - 0.049 13.1 0.3 0.086 12.3 0.2 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|284161415|ref|YP_003400038.1| - 0.3 10.3 3.6 0.97 8.7 2.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain PBP_like PF12727.2 gi|284161416|ref|YP_003400039.1| - 1.1e-61 207.1 0.1 4.9e-61 205.0 0.0 1.9 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.12 gi|284161416|ref|YP_003400039.1| - 7.5e-53 178.1 0.7 1.3e-52 177.3 0.5 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|284161416|ref|YP_003400039.1| - 5.8e-30 103.6 0.2 1.1e-29 102.7 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|284161416|ref|YP_003400039.1| - 4e-19 68.3 0.0 9e-19 67.2 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|284161416|ref|YP_003400039.1| - 1.5e-06 27.9 0.0 3.6e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|284161416|ref|YP_003400039.1| - 0.0011 18.4 0.0 0.002 17.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein HTH_AsnC-type PF13404.1 gi|284161416|ref|YP_003400039.1| - 0.061 12.8 0.0 0.21 11.1 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain LysR_substrate PF03466.15 gi|284161416|ref|YP_003400039.1| - 0.2 10.7 0.0 0.73 8.8 0.0 1.9 2 0 0 2 2 2 0 LysR substrate binding domain FecCD PF01032.13 gi|284161417|ref|YP_003400040.1| - 6.7e-78 261.6 33.0 7.8e-78 261.4 22.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|284161417|ref|YP_003400040.1| - 1e-05 24.9 17.4 1e-05 24.9 12.0 1.9 1 1 1 2 2 2 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|284161418|ref|YP_003400041.1| - 3.9e-43 147.2 0.0 4.7e-43 147.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein PALP PF00291.20 gi|284161418|ref|YP_003400041.1| - 0.0026 17.0 0.0 0.0036 16.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Hist_deacetyl PF00850.14 gi|284161419|ref|YP_003400042.1| - 7.4e-72 242.2 0.0 9.2e-72 241.9 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain A1_Propeptide PF07966.7 gi|284161419|ref|YP_003400042.1| - 0.05 13.3 0.1 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 A1 Propeptide Prenyltrans_2 PF13249.1 gi|284161420|ref|YP_003400043.1| - 1.3e-33 115.7 3.2 1.8e-20 73.3 0.2 3.5 1 1 1 2 2 2 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|284161420|ref|YP_003400043.1| - 2.5e-30 104.6 5.9 5.2e-12 45.7 0.1 4.5 2 1 2 4 4 4 4 Prenyltransferase-like Prenyltrans PF00432.16 gi|284161420|ref|YP_003400043.1| - 1.1e-17 63.2 2.9 5.9e-05 22.5 0.1 5.5 5 0 0 5 5 5 3 Prenyltransferase and squalene oxidase repeat DUF4430 PF14478.1 gi|284161420|ref|YP_003400043.1| - 1.1e-13 51.0 0.5 6.8e-13 48.4 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4430) A2M_comp PF07678.9 gi|284161420|ref|YP_003400043.1| - 8.4e-07 28.4 0.5 0.011 14.9 0.0 3.8 2 1 0 3 3 3 2 A-macroglobulin complement component PQQ_3 PF13570.1 gi|284161421|ref|YP_003400044.1| - 8.6e-34 114.8 32.8 2.6e-07 30.6 0.0 9.0 9 0 0 9 9 9 8 PQQ-like domain PQQ_2 PF13360.1 gi|284161421|ref|YP_003400044.1| - 1.3e-27 96.8 0.7 7.6e-12 45.2 0.0 3.7 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|284161421|ref|YP_003400044.1| - 5.4e-07 28.8 19.9 0.018 14.5 0.5 7.5 8 0 0 8 8 8 4 PQQ enzyme repeat DUF4430 PF14478.1 gi|284161421|ref|YP_003400044.1| - 0.18 11.8 12.3 0.066 13.2 2.1 4.2 5 0 0 5 5 5 0 Domain of unknown function (DUF4430) CobD_Cbib PF03186.8 gi|284161422|ref|YP_003400045.1| - 1.8e-82 276.7 0.0 2.2e-82 276.4 0.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.10 gi|284161423|ref|YP_003400046.1| - 1.9e-55 188.0 11.8 2.2e-55 187.8 8.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase HTH_24 PF13412.1 gi|284161424|ref|YP_003400047.1| - 6.2e-08 31.8 0.0 1e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|284161424|ref|YP_003400047.1| - 4.7e-07 29.4 0.1 6.1e-07 29.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284161424|ref|YP_003400047.1| - 4.6e-06 26.2 0.0 5.6e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284161424|ref|YP_003400047.1| - 1.5e-05 24.5 0.0 1.9e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 MarR family FeoC PF09012.5 gi|284161424|ref|YP_003400047.1| - 9.9e-05 21.9 0.0 0.00012 21.7 0.0 1.1 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_IclR PF09339.5 gi|284161424|ref|YP_003400047.1| - 0.0001 21.7 0.0 0.00013 21.4 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|284161424|ref|YP_003400047.1| - 0.00012 21.6 0.0 0.00016 21.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|284161424|ref|YP_003400047.1| - 0.00032 20.5 0.0 0.00049 19.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.6 gi|284161424|ref|YP_003400047.1| - 0.0016 18.7 0.0 0.0022 18.3 0.0 1.1 1 0 0 1 1 1 1 Replication protein A C terminal B-block_TFIIIC PF04182.7 gi|284161424|ref|YP_003400047.1| - 0.0022 17.7 0.1 0.003 17.3 0.1 1.1 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|284161424|ref|YP_003400047.1| - 0.0025 18.0 0.0 0.0031 17.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|284161424|ref|YP_003400047.1| - 0.003 17.4 0.1 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.1 gi|284161424|ref|YP_003400047.1| - 0.003 17.5 0.1 0.0036 17.3 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|284161424|ref|YP_003400047.1| - 0.0035 17.4 0.0 0.004 17.2 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator EAP30 PF04157.11 gi|284161424|ref|YP_003400047.1| - 0.0037 16.4 0.0 0.0044 16.2 0.0 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family PadR PF03551.9 gi|284161424|ref|YP_003400047.1| - 0.0044 16.7 0.1 0.0067 16.1 0.0 1.3 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|284161424|ref|YP_003400047.1| - 0.0056 16.4 0.0 0.0074 16.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain IF2_N PF04760.10 gi|284161424|ref|YP_003400047.1| - 0.0065 16.1 0.1 0.012 15.2 0.1 1.5 1 1 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_23 PF13384.1 gi|284161424|ref|YP_003400047.1| - 0.0094 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|284161424|ref|YP_003400047.1| - 0.018 14.7 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|284161424|ref|YP_003400047.1| - 0.022 14.8 0.1 0.032 14.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|284161424|ref|YP_003400047.1| - 0.028 14.3 0.0 0.036 13.9 0.0 1.1 1 0 0 1 1 1 0 Sigma-70 region 3 DUF2316 PF10078.4 gi|284161424|ref|YP_003400047.1| - 0.044 13.7 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2316) Glyco_tranf_2_4 PF13704.1 gi|284161424|ref|YP_003400047.1| - 0.049 13.9 0.0 0.054 13.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 2 Sigma70_r4 PF04545.11 gi|284161424|ref|YP_003400047.1| - 0.049 12.9 0.0 0.071 12.4 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_41 PF14502.1 gi|284161424|ref|YP_003400047.1| - 0.051 13.2 0.1 0.098 12.2 0.0 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|284161424|ref|YP_003400047.1| - 0.054 12.9 0.0 0.072 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF4423 PF14394.1 gi|284161424|ref|YP_003400047.1| - 0.058 12.9 0.0 0.061 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Sigma70_r4_2 PF08281.7 gi|284161424|ref|YP_003400047.1| - 0.1 12.0 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|284161424|ref|YP_003400047.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain NTP_transf_3 PF12804.2 gi|284161425|ref|YP_003400048.1| - 5.6e-19 68.7 0.0 7.1e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|284161425|ref|YP_003400048.1| - 0.00011 21.9 0.0 0.00017 21.3 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase CofC PF01983.11 gi|284161425|ref|YP_003400048.1| - 0.0087 15.0 0.0 0.018 13.9 0.0 1.5 2 0 0 2 2 2 1 Guanylyl transferase CofC like Baculo_ME53 PF06061.6 gi|284161426|ref|YP_003400049.1| - 0.048 12.6 0.5 0.055 12.4 0.4 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 HECT_2 PF09814.4 gi|284161426|ref|YP_003400049.1| - 0.11 11.2 0.1 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding CbiZ PF01955.13 gi|284161427|ref|YP_003400050.1| - 1.5e-43 148.8 0.7 1.7e-43 148.6 0.5 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase DBI_PRT PF02277.12 gi|284161428|ref|YP_003400051.1| - 9e-23 80.8 0.0 1.3e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase DUF2240 PF09999.4 gi|284161429|ref|YP_003400052.1| - 3.7e-15 55.6 0.6 4.1e-15 55.4 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) RHH_4 PF13467.1 gi|284161429|ref|YP_003400052.1| - 0.039 13.8 0.2 3 7.7 0.1 2.2 1 1 1 2 2 2 0 Ribbon-helix-helix domain SidE PF12252.3 gi|284161429|ref|YP_003400052.1| - 0.074 10.3 0.8 0.079 10.2 0.5 1.0 1 0 0 1 1 1 0 Dot/Icm substrate protein DUF4287 PF14117.1 gi|284161429|ref|YP_003400052.1| - 0.093 12.4 0.0 0.14 11.9 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4287) DUF948 PF06103.6 gi|284161429|ref|YP_003400052.1| - 0.13 12.1 2.2 0.13 12.1 0.3 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Ribosomal_60s PF00428.14 gi|284161429|ref|YP_003400052.1| - 0.16 12.3 0.8 11 6.4 0.1 2.1 1 1 1 2 2 2 0 60s Acidic ribosomal protein HypD PF01924.11 gi|284161430|ref|YP_003400053.1| - 1.1e-134 448.7 0.0 1.3e-134 448.4 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family HupF_HypC PF01455.13 gi|284161431|ref|YP_003400054.1| - 4.7e-29 100.1 0.2 5.3e-29 100.0 0.1 1.0 1 0 0 1 1 1 1 HupF/HypC family SRPRB PF09439.5 gi|284161431|ref|YP_003400054.1| - 0.074 12.2 0.0 0.084 12.0 0.0 1.0 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit YajC PF02699.10 gi|284161431|ref|YP_003400054.1| - 0.083 12.5 0.2 1.5 8.5 0.1 2.0 1 1 1 2 2 2 0 Preprotein translocase subunit DUF3006 PF11213.3 gi|284161431|ref|YP_003400054.1| - 0.087 12.5 0.5 0.14 11.9 0.3 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3006) cobW PF02492.14 gi|284161432|ref|YP_003400055.1| - 4.4e-40 137.0 2.2 6e-40 136.5 1.5 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|284161432|ref|YP_003400055.1| - 3.1e-09 35.9 3.9 4.8e-08 32.0 2.7 2.0 1 1 0 1 1 1 1 ArgK protein NTPase_1 PF03266.10 gi|284161432|ref|YP_003400055.1| - 0.0011 18.7 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 NTPase Arch_ATPase PF01637.13 gi|284161432|ref|YP_003400055.1| - 0.0066 16.1 0.1 0.0085 15.8 0.1 1.5 1 1 0 1 1 1 1 Archaeal ATPase DOT1 PF08123.8 gi|284161432|ref|YP_003400055.1| - 0.024 13.9 0.2 0.071 12.4 0.1 1.8 2 0 0 2 2 2 0 Histone methylation protein DOT1 MobB PF03205.9 gi|284161432|ref|YP_003400055.1| - 0.028 14.1 3.4 0.036 13.7 0.2 2.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|284161432|ref|YP_003400055.1| - 0.074 13.0 0.0 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain UPF0079 PF02367.12 gi|284161432|ref|YP_003400055.1| - 0.5 10.0 2.6 0.83 9.3 0.3 2.3 2 2 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 HypA PF01155.14 gi|284161433|ref|YP_003400056.1| - 4.7e-27 93.9 3.8 5.3e-27 93.7 2.7 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|284161433|ref|YP_003400056.1| - 0.012 15.2 4.8 0.018 14.7 3.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|284161433|ref|YP_003400056.1| - 0.17 11.7 5.2 0.34 10.7 3.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon TPR_7 PF13176.1 gi|284161434|ref|YP_003400057.1| - 1.6e-07 30.5 29.5 0.4 10.5 0.1 8.0 5 1 3 8 8 8 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|284161434|ref|YP_003400057.1| - 1.6e-07 30.6 36.0 0.25 11.3 0.1 7.7 4 2 4 8 8 8 5 Tetratricopeptide repeat SNAP PF14938.1 gi|284161434|ref|YP_003400057.1| - 1.3e-06 27.8 23.8 1.3e-06 27.7 14.8 2.0 1 1 0 1 1 1 1 Soluble NSF attachment protein, SNAP TPR_6 PF13174.1 gi|284161434|ref|YP_003400057.1| - 1.8e-06 27.9 25.4 0.58 10.7 1.1 7.2 6 1 0 6 6 6 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|284161434|ref|YP_003400057.1| - 2.4e-06 27.6 12.3 1.4 9.7 0.2 6.2 3 3 3 6 6 6 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|284161434|ref|YP_003400057.1| - 3e-06 26.8 22.7 0.017 14.7 2.0 4.1 2 1 1 3 3 3 3 TPR repeat TPR_12 PF13424.1 gi|284161434|ref|YP_003400057.1| - 3.3e-06 26.9 17.3 0.029 14.3 0.9 4.7 2 1 2 4 4 4 2 Tetratricopeptide repeat RPN7 PF10602.4 gi|284161434|ref|YP_003400057.1| - 3.8e-06 26.3 12.8 0.12 11.7 1.3 4.4 2 2 1 4 4 4 3 26S proteasome subunit RPN7 TPR_8 PF13181.1 gi|284161434|ref|YP_003400057.1| - 4.4e-05 22.9 32.6 0.033 13.9 0.1 7.1 4 2 3 7 7 7 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|284161434|ref|YP_003400057.1| - 0.00096 18.6 28.4 1.9 8.2 1.3 7.3 6 2 2 8 8 8 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|284161434|ref|YP_003400057.1| - 0.0047 17.5 17.2 0.42 11.3 0.2 4.3 2 1 2 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|284161434|ref|YP_003400057.1| - 0.0073 16.1 3.2 5.3 6.9 0.3 4.0 1 1 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|284161434|ref|YP_003400057.1| - 0.0076 16.5 14.0 1 9.7 0.2 4.8 1 1 3 4 4 4 2 Tetratricopeptide repeat Spatacsin_C PF14649.1 gi|284161434|ref|YP_003400057.1| - 0.093 11.5 1.3 0.31 9.8 0.3 2.2 1 1 1 2 2 2 0 Spatacsin C-terminus BrkDBD PF09607.5 gi|284161434|ref|YP_003400057.1| - 0.11 12.0 0.1 0.11 12.0 0.1 2.0 2 0 0 2 2 1 0 Brinker DNA-binding domain Clathrin PF00637.15 gi|284161434|ref|YP_003400057.1| - 0.34 10.5 15.3 0.3 10.6 0.8 3.4 2 1 1 3 3 3 0 Region in Clathrin and VPS PsaM PF07465.8 gi|284161434|ref|YP_003400057.1| - 0.5 10.0 4.2 1.4 8.5 2.9 1.8 1 0 0 1 1 1 0 Photosystem I protein M (PsaM) Dexa_ind PF15198.1 gi|284161434|ref|YP_003400057.1| - 0.61 10.0 2.9 1.2 9.1 2.0 1.4 1 0 0 1 1 1 0 Dexamethasone-induced Sigma70_r4 PF04545.11 gi|284161435|ref|YP_003400058.1| - 5.4e-05 22.4 0.0 0.00015 21.0 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|284161435|ref|YP_003400058.1| - 7.2e-05 22.3 0.0 0.00057 19.4 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|284161435|ref|YP_003400058.1| - 0.00019 20.8 0.4 0.0011 18.3 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 DUF2795 PF11387.3 gi|284161435|ref|YP_003400058.1| - 0.00042 20.1 0.0 0.0014 18.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2795) HTH_29 PF13551.1 gi|284161435|ref|YP_003400058.1| - 0.01 15.9 0.1 0.029 14.5 0.1 2.0 1 1 0 1 1 1 0 Winged helix-turn helix GerE PF00196.14 gi|284161435|ref|YP_003400058.1| - 0.014 14.6 0.5 0.16 11.3 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_28 PF13518.1 gi|284161435|ref|YP_003400058.1| - 0.02 14.9 0.0 0.067 13.2 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|284161435|ref|YP_003400058.1| - 0.041 13.5 0.2 0.43 10.2 0.0 2.6 2 1 0 2 2 2 0 HTH domain HTH_17 PF12728.2 gi|284161435|ref|YP_003400058.1| - 0.089 13.0 0.1 0.37 11.0 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_terminase PF10668.4 gi|284161435|ref|YP_003400058.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Phage terminase small subunit TrmB PF01978.14 gi|284161435|ref|YP_003400058.1| - 0.12 12.0 1.8 0.71 9.6 0.1 2.8 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|284161435|ref|YP_003400058.1| - 0.13 11.8 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_7 PF02796.10 gi|284161435|ref|YP_003400058.1| - 0.26 11.1 1.5 1.4 8.8 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase KaiC PF06745.8 gi|284161436|ref|YP_003400059.1| - 1.3e-67 227.2 0.1 1.5e-67 227.0 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|284161436|ref|YP_003400059.1| - 2e-10 40.4 0.0 2.9e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|284161436|ref|YP_003400059.1| - 2.3e-05 23.4 0.1 3.3e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Rad51 IstB_IS21 PF01695.12 gi|284161436|ref|YP_003400059.1| - 0.00052 19.4 0.1 0.0011 18.3 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|284161436|ref|YP_003400059.1| - 0.00068 19.5 0.1 0.0036 17.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|284161436|ref|YP_003400059.1| - 0.0021 17.8 0.4 0.0036 17.0 0.3 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|284161436|ref|YP_003400059.1| - 0.0047 17.0 0.0 0.0073 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|284161436|ref|YP_003400059.1| - 0.0099 14.8 0.1 0.012 14.6 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DUF775 PF05603.7 gi|284161436|ref|YP_003400059.1| - 0.01 15.3 0.3 0.018 14.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF775) KTI12 PF08433.5 gi|284161436|ref|YP_003400059.1| - 0.011 14.9 0.0 0.027 13.6 0.0 1.7 1 1 0 1 1 1 0 Chromatin associated protein KTI12 ArgK PF03308.11 gi|284161436|ref|YP_003400059.1| - 0.016 14.0 0.0 0.036 12.8 0.0 1.5 1 1 0 1 1 1 0 ArgK protein CobU PF02283.11 gi|284161436|ref|YP_003400059.1| - 0.016 14.6 0.1 0.032 13.6 0.1 1.5 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA PF00004.24 gi|284161436|ref|YP_003400059.1| - 0.031 14.4 0.5 0.12 12.5 0.3 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|284161436|ref|YP_003400059.1| - 0.074 12.7 0.0 0.17 11.5 0.0 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|284161436|ref|YP_003400059.1| - 0.099 13.4 0.3 0.53 11.1 0.0 2.2 1 1 0 2 2 2 0 AAA domain Zn-ribbon_8 PF09723.5 gi|284161437|ref|YP_003400060.1| - 0.00031 20.6 0.6 0.0055 16.6 0.4 2.0 1 1 0 1 1 1 1 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|284161437|ref|YP_003400060.1| - 0.00037 19.9 0.3 0.64 9.5 0.0 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|284161437|ref|YP_003400060.1| - 0.00078 18.8 1.9 0.5 9.8 0.1 2.1 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|284161437|ref|YP_003400060.1| - 0.0025 17.8 1.4 1.2 9.2 0.1 2.1 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|284161437|ref|YP_003400060.1| - 0.0029 16.9 0.3 0.87 8.9 0.0 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|284161437|ref|YP_003400060.1| - 0.0073 16.5 1.0 0.14 12.4 0.0 2.0 1 1 1 2 2 2 1 Restriction alleviation protein Lar HypA PF01155.14 gi|284161437|ref|YP_003400060.1| - 0.013 15.2 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|284161437|ref|YP_003400060.1| - 0.019 14.1 4.5 0.15 11.3 3.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284161437|ref|YP_003400060.1| - 0.023 14.1 2.1 2.9 7.4 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|284161437|ref|YP_003400060.1| - 0.034 14.0 2.1 0.62 10.0 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.1 gi|284161437|ref|YP_003400060.1| - 0.044 13.4 0.7 8.2 6.2 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1 PF03811.8 gi|284161437|ref|YP_003400060.1| - 0.044 13.2 0.1 3.1 7.3 0.0 2.1 2 0 0 2 2 2 0 InsA N-terminal domain DUF678 PF05077.7 gi|284161437|ref|YP_003400060.1| - 0.05 13.5 0.7 1.3 9.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF678) Cys_rich_KTR PF14205.1 gi|284161437|ref|YP_003400060.1| - 0.051 13.0 1.2 23 4.5 0.0 2.0 1 1 0 1 1 1 0 Cysteine-rich KTR Zn_Tnp_IS1595 PF12760.2 gi|284161437|ref|YP_003400060.1| - 0.057 13.2 2.2 1.6 8.5 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Elf1 PF05129.8 gi|284161437|ref|YP_003400060.1| - 0.066 12.9 0.5 31 4.3 0.0 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DUF1178 PF06676.6 gi|284161437|ref|YP_003400060.1| - 0.074 13.2 0.0 0.08 13.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1178) DZR PF12773.2 gi|284161437|ref|YP_003400060.1| - 0.078 12.8 0.4 0.18 11.6 0.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon FdhE PF04216.7 gi|284161437|ref|YP_003400060.1| - 0.082 12.6 0.4 11 5.6 0.0 2.0 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation Cys_rich_CPXG PF14255.1 gi|284161437|ref|YP_003400060.1| - 0.086 12.6 0.5 7.6 6.4 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-RING_3 PF14369.1 gi|284161437|ref|YP_003400060.1| - 0.095 12.7 1.2 5.4 7.0 0.1 2.1 2 0 0 2 2 2 0 zinc-finger zf-C4_Topoisom PF01396.14 gi|284161437|ref|YP_003400060.1| - 0.099 12.1 0.5 2.2 7.8 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger RPA_interact_C PF14768.1 gi|284161437|ref|YP_003400060.1| - 0.12 12.7 0.1 2 8.8 0.0 2.0 2 0 0 2 2 2 0 Replication protein A interacting C-terminal A2L_zn_ribbon PF08792.5 gi|284161437|ref|YP_003400060.1| - 0.17 11.3 1.8 3.3 7.2 0.2 2.4 3 0 0 3 3 2 0 A2L zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|284161437|ref|YP_003400060.1| - 0.39 11.0 3.4 5.6 7.3 2.4 2.0 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Auto_anti-p27 PF06677.7 gi|284161437|ref|YP_003400060.1| - 0.46 10.2 2.6 12 5.8 0.6 2.4 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0547 PF10571.4 gi|284161437|ref|YP_003400060.1| - 0.68 9.6 3.2 9.5 6.0 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF61 PF01886.11 gi|284161438|ref|YP_003400061.1| - 3.2e-35 120.8 1.9 3.6e-35 120.6 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 DUF499 PF04465.7 gi|284161438|ref|YP_003400061.1| - 0.015 12.8 0.7 0.015 12.8 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF499) SAM_adeno_trans PF01887.11 gi|284161439|ref|YP_003400062.1| - 1.4e-79 266.7 0.0 1.6e-79 266.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase UPF0278 PF08745.6 gi|284161440|ref|YP_003400063.1| - 3.8e-85 284.3 0.1 4.4e-85 284.1 0.1 1.0 1 0 0 1 1 1 1 UPF0278 family PIN PF01850.16 gi|284161440|ref|YP_003400063.1| - 0.015 15.6 0.2 0.05 13.9 0.0 2.0 1 1 1 2 2 2 0 PIN domain UPF0104 PF03706.8 gi|284161441|ref|YP_003400064.1| - 4.8e-35 121.2 23.4 6.9e-35 120.7 16.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|284161441|ref|YP_003400064.1| - 7.3e-30 103.8 0.1 1.1e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284161441|ref|YP_003400064.1| - 9e-10 38.7 0.0 2.7e-09 37.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|284161441|ref|YP_003400064.1| - 2e-07 30.3 0.0 2.9e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|284161441|ref|YP_003400064.1| - 6.5e-07 29.5 0.0 1.2e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 HN PF00423.14 gi|284161441|ref|YP_003400064.1| - 0.071 11.3 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase PG_binding_1 PF01471.13 gi|284161441|ref|YP_003400064.1| - 0.15 12.0 0.0 0.35 10.8 0.0 1.6 1 0 0 1 1 1 0 Putative peptidoglycan binding domain P5CR_dimer PF14748.1 gi|284161442|ref|YP_003400065.1| - 7.2e-20 70.9 0.0 1.2e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|284161442|ref|YP_003400065.1| - 3.7e-19 68.9 0.2 6.6e-19 68.1 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|284161442|ref|YP_003400065.1| - 1.3e-09 37.9 1.1 4e-08 33.1 0.7 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|284161442|ref|YP_003400065.1| - 9.7e-09 35.2 0.0 1.6e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|284161442|ref|YP_003400065.1| - 1.7e-06 28.0 0.2 5.1e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 TrkA-N domain ApbA PF02558.11 gi|284161442|ref|YP_003400065.1| - 4.1e-06 26.3 0.1 7e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|284161442|ref|YP_003400065.1| - 5.9e-05 22.5 0.1 0.00011 21.5 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|284161442|ref|YP_003400065.1| - 0.00011 22.4 0.3 0.065 13.6 0.2 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|284161442|ref|YP_003400065.1| - 0.00019 21.4 0.1 0.00033 20.7 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding ADH_zinc_N PF00107.21 gi|284161442|ref|YP_003400065.1| - 0.001 18.6 0.1 0.0021 17.6 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.13 gi|284161442|ref|YP_003400065.1| - 0.0028 17.3 0.3 0.011 15.4 0.1 1.9 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|284161442|ref|YP_003400065.1| - 0.0065 15.8 0.2 0.021 14.1 0.1 1.8 1 1 1 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain adh_short PF00106.20 gi|284161442|ref|YP_003400065.1| - 0.0065 16.3 0.0 0.0098 15.8 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Shikimate_DH PF01488.15 gi|284161442|ref|YP_003400065.1| - 0.017 15.2 0.1 0.03 14.4 0.1 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|284161442|ref|YP_003400065.1| - 0.038 13.1 0.0 0.063 12.4 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDH PF02153.12 gi|284161442|ref|YP_003400065.1| - 0.05 12.4 0.2 0.078 11.8 0.2 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase CoA_binding PF02629.14 gi|284161442|ref|YP_003400065.1| - 0.11 12.9 0.3 0.37 11.3 0.2 1.9 1 1 0 1 1 1 0 CoA binding domain HEM4 PF02602.10 gi|284161443|ref|YP_003400066.1| - 6.7e-38 130.2 0.0 7.7e-38 130.0 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Nitro_FeMo-Co PF02579.12 gi|284161443|ref|YP_003400066.1| - 0.0044 17.0 0.0 6.1 6.9 0.0 3.1 2 1 1 3 3 3 2 Dinitrogenase iron-molybdenum cofactor SAM_2 PF07647.12 gi|284161443|ref|YP_003400066.1| - 0.11 12.3 0.0 42 4.0 0.0 3.1 3 0 0 3 3 3 0 SAM domain (Sterile alpha motif) SpoIIP PF07454.6 gi|284161443|ref|YP_003400066.1| - 0.14 11.3 0.0 1.2 8.2 0.0 2.0 2 0 0 2 2 2 0 Stage II sporulation protein P (SpoIIP) Lactamase_B_2 PF12706.2 gi|284161444|ref|YP_003400067.1| - 1.3e-22 80.3 0.1 1.6e-22 80.0 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284161444|ref|YP_003400067.1| - 1.7e-10 40.9 0.2 2.3e-10 40.4 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|284161444|ref|YP_003400067.1| - 7.4e-10 38.7 0.1 1.1e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ArsA_ATPase PF02374.10 gi|284161445|ref|YP_003400068.1| - 1.5e-93 313.1 0.0 1.8e-93 312.9 0.0 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|284161445|ref|YP_003400068.1| - 5.3e-16 58.6 0.0 3.6e-15 55.9 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|284161445|ref|YP_003400068.1| - 3.5e-06 27.0 0.1 5.3e-05 23.2 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|284161445|ref|YP_003400068.1| - 0.00062 20.5 0.2 0.005 17.6 0.0 2.5 2 2 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|284161445|ref|YP_003400068.1| - 0.00079 18.6 0.3 0.0098 15.0 0.0 2.4 3 0 0 3 3 3 1 KaiC SRP54 PF00448.17 gi|284161445|ref|YP_003400068.1| - 0.0012 18.3 0.1 0.012 15.1 0.1 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.13 gi|284161445|ref|YP_003400068.1| - 0.0031 16.7 0.0 0.0094 15.1 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|284161445|ref|YP_003400068.1| - 0.0072 15.7 1.4 0.023 14.0 1.0 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|284161445|ref|YP_003400068.1| - 0.0088 15.4 0.1 0.016 14.6 0.1 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein PhoH PF02562.11 gi|284161445|ref|YP_003400068.1| - 0.011 14.9 0.0 0.02 14.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_18 PF13238.1 gi|284161445|ref|YP_003400068.1| - 0.012 15.8 1.5 0.026 14.8 0.2 2.3 2 1 0 2 2 2 0 AAA domain RHSP PF07999.6 gi|284161445|ref|YP_003400068.1| - 0.016 13.8 0.0 0.025 13.1 0.0 1.2 1 0 0 1 1 1 0 Retrotransposon hot spot protein AAA_10 PF12846.2 gi|284161445|ref|YP_003400068.1| - 0.017 14.5 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|284161445|ref|YP_003400068.1| - 0.019 14.6 0.8 0.057 13.1 0.1 2.1 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|284161445|ref|YP_003400068.1| - 0.022 13.5 0.1 0.04 12.6 0.1 1.4 1 0 0 1 1 1 0 ArgK protein KTI12 PF08433.5 gi|284161445|ref|YP_003400068.1| - 0.031 13.4 0.0 0.062 12.5 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA PF00004.24 gi|284161445|ref|YP_003400068.1| - 0.048 13.8 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|284161445|ref|YP_003400068.1| - 0.082 11.7 0.6 0.17 10.7 0.4 1.5 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.15 gi|284161445|ref|YP_003400068.1| - 0.084 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase YhjQ PF06564.7 gi|284161445|ref|YP_003400068.1| - 0.1 11.9 0.0 0.24 10.7 0.0 1.6 2 0 0 2 2 2 0 YhjQ protein AAA_21 PF13304.1 gi|284161445|ref|YP_003400068.1| - 0.15 12.0 3.6 0.2 11.5 0.0 2.3 2 1 1 3 3 3 0 AAA domain Radical_SAM PF04055.16 gi|284161446|ref|YP_003400069.1| - 2.7e-19 69.9 0.3 5.2e-19 69.0 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|284161446|ref|YP_003400069.1| - 3.9e-08 33.3 0.1 6.9e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|284161446|ref|YP_003400069.1| - 1e-07 32.1 0.0 1.9e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain GTP_EFTU PF00009.22 gi|284161447|ref|YP_003400070.1| - 1.4e-42 145.2 0.1 2.8e-42 144.3 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|284161447|ref|YP_003400070.1| - 5.9e-33 112.7 2.0 1.3e-32 111.7 1.4 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|284161447|ref|YP_003400070.1| - 1.5e-08 34.6 0.4 1.2e-07 31.7 0.3 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|284161447|ref|YP_003400070.1| - 0.0012 18.8 0.2 0.0028 17.5 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|284161447|ref|YP_003400070.1| - 0.0027 17.0 0.4 1.2 8.4 0.1 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B PduV-EutP PF10662.4 gi|284161447|ref|YP_003400070.1| - 0.0054 16.2 1.1 2.8 7.4 0.2 2.8 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation PIN_4 PF13638.1 gi|284161448|ref|YP_003400071.1| - 5.4e-09 36.2 0.6 3.6e-05 23.8 0.0 2.1 1 1 1 2 2 2 2 PIN domain Fcf1 PF04900.7 gi|284161448|ref|YP_003400071.1| - 1.2e-07 31.6 0.0 1.6e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN PF01850.16 gi|284161448|ref|YP_003400071.1| - 1.4e-07 31.8 0.8 1.2e-05 25.6 0.6 2.1 1 1 0 1 1 1 1 PIN domain DUF4411 PF14367.1 gi|284161448|ref|YP_003400071.1| - 0.00053 19.7 0.1 0.024 14.3 0.1 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4411) UPF0278 PF08745.6 gi|284161448|ref|YP_003400071.1| - 0.0041 16.3 0.2 0.063 12.5 0.0 2.0 1 1 1 2 2 2 1 UPF0278 family PIN_2 PF10130.4 gi|284161448|ref|YP_003400071.1| - 0.012 15.7 0.1 0.17 11.9 0.0 2.0 1 1 1 2 2 2 0 PIN domain RHH_1 PF01402.16 gi|284161448|ref|YP_003400071.1| - 0.067 13.1 0.0 4.5 7.3 0.0 2.6 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family PIN_3 PF13470.1 gi|284161448|ref|YP_003400071.1| - 0.085 13.5 0.1 0.23 12.1 0.0 1.6 1 1 0 1 1 1 0 PIN domain RNase_Zc3h12a PF11977.3 gi|284161448|ref|YP_003400071.1| - 0.12 12.1 0.1 0.19 11.5 0.0 1.5 1 1 1 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain DUF429 PF04250.8 gi|284161449|ref|YP_003400072.1| - 3.2e-20 72.2 0.0 4.5e-20 71.7 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF429) HD PF01966.17 gi|284161450|ref|YP_003400073.1| - 5.7e-14 52.1 0.6 5.7e-14 52.1 0.4 1.6 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|284161450|ref|YP_003400073.1| - 0.00011 21.5 0.0 0.0002 20.7 0.0 1.4 1 1 0 1 1 1 1 HDOD domain DUF3387 PF11867.3 gi|284161450|ref|YP_003400073.1| - 0.016 14.1 0.4 0.016 14.1 0.3 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3387) Rep_3 PF01051.16 gi|284161450|ref|YP_003400073.1| - 0.051 13.1 1.9 0.2 11.2 1.2 2.1 1 1 1 2 2 2 0 Initiator Replication protein EF-hand_7 PF13499.1 gi|284161450|ref|YP_003400073.1| - 0.064 13.4 0.1 0.15 12.2 0.1 1.6 1 0 0 1 1 1 0 EF-hand domain pair SUI1 PF01253.17 gi|284161451|ref|YP_003400074.1| - 1.2e-25 89.1 3.4 1.4e-25 88.8 2.4 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|284161451|ref|YP_003400074.1| - 4e-05 23.7 1.2 5.4e-05 23.3 0.8 1.2 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) PG_binding_4 PF12229.3 gi|284161451|ref|YP_003400074.1| - 0.024 14.8 0.3 0.034 14.3 0.2 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DUF4479 PF14794.1 gi|284161451|ref|YP_003400074.1| - 0.037 13.5 0.1 0.067 12.7 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) PseudoU_synth_1 PF01416.15 gi|284161452|ref|YP_003400075.1| - 2.5e-37 127.4 0.0 3.5e-23 82.0 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase LMWPc PF01451.16 gi|284161453|ref|YP_003400076.1| - 1.3e-29 103.3 0.1 2.9e-29 102.1 0.0 1.5 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase PTS_IIB PF02302.12 gi|284161453|ref|YP_003400076.1| - 0.0023 18.3 0.1 1 9.9 0.0 2.2 1 1 1 2 2 2 2 PTS system, Lactose/Cellobiose specific IIB subunit Lumazine_bd PF12870.2 gi|284161453|ref|YP_003400076.1| - 0.0038 17.2 0.2 0.0057 16.6 0.1 1.4 1 1 0 1 1 1 1 Lumazine-binding domain Acetyltransf_4 PF13420.1 gi|284161453|ref|YP_003400076.1| - 0.048 13.6 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Nuc_deoxyrib_tr PF05014.10 gi|284161453|ref|YP_003400076.1| - 0.084 12.7 0.0 2.8 7.8 0.0 2.1 2 0 0 2 2 2 0 Nucleoside 2-deoxyribosyltransferase DUF3921 PF13060.1 gi|284161453|ref|YP_003400076.1| - 0.091 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3921) ABC_tran PF00005.22 gi|284161454|ref|YP_003400077.1| - 7.2e-20 71.6 0.1 1.8e-19 70.4 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284161454|ref|YP_003400077.1| - 4.1e-11 43.3 0.4 8.4e-06 25.9 0.0 2.8 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|284161454|ref|YP_003400077.1| - 1.3e-05 25.6 0.0 3e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284161454|ref|YP_003400077.1| - 2.2e-05 23.7 0.3 0.00026 20.2 0.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Acetyltransf_1 PF00583.19 gi|284161454|ref|YP_003400077.1| - 2.6e-05 24.1 0.0 7e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284161454|ref|YP_003400077.1| - 3.9e-05 23.7 0.3 0.00033 20.7 0.0 2.7 3 0 0 3 3 2 1 Acetyltransferase (GNAT) domain AAA_16 PF13191.1 gi|284161454|ref|YP_003400077.1| - 0.00013 21.9 0.0 0.00027 20.9 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|284161454|ref|YP_003400077.1| - 0.00043 20.4 0.1 0.0012 18.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain GNAT_acetyltr_2 PF13718.1 gi|284161454|ref|YP_003400077.1| - 0.00052 19.3 0.0 0.0009 18.6 0.0 1.4 1 0 0 1 1 1 1 GNAT acetyltransferase 2 AAA_25 PF13481.1 gi|284161454|ref|YP_003400077.1| - 0.00081 18.8 0.5 0.0054 16.1 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|284161454|ref|YP_003400077.1| - 0.00099 18.6 0.1 0.7 9.2 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain NOB1_Zn_bind PF08772.6 gi|284161454|ref|YP_003400077.1| - 0.0027 17.5 0.1 0.0057 16.4 0.1 1.5 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-TFIIB PF13453.1 gi|284161454|ref|YP_003400077.1| - 0.0034 16.5 1.2 0.79 8.9 0.1 2.7 2 0 0 2 2 2 1 Transcription factor zinc-finger AAA_29 PF13555.1 gi|284161454|ref|YP_003400077.1| - 0.004 16.6 0.0 0.0084 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|284161454|ref|YP_003400077.1| - 0.008 15.0 0.1 0.036 12.9 0.1 2.0 1 1 0 1 1 1 1 NB-ARC domain zf-ribbon_3 PF13248.1 gi|284161454|ref|YP_003400077.1| - 0.0091 15.1 0.9 0.018 14.2 0.6 1.5 1 0 0 1 1 1 1 zinc-ribbon domain AAA_19 PF13245.1 gi|284161454|ref|YP_003400077.1| - 0.014 15.1 0.4 0.17 11.6 0.1 2.5 2 1 0 2 2 2 0 Part of AAA domain UPF0079 PF02367.12 gi|284161454|ref|YP_003400077.1| - 0.017 14.7 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 zinc_ribbon_2 PF13240.1 gi|284161454|ref|YP_003400077.1| - 0.019 14.4 3.5 0.041 13.3 2.4 1.6 1 0 0 1 1 1 0 zinc-ribbon domain NACHT PF05729.7 gi|284161454|ref|YP_003400077.1| - 0.022 14.3 0.0 0.04 13.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain HypA PF01155.14 gi|284161454|ref|YP_003400077.1| - 0.034 13.8 0.5 0.098 12.3 0.3 1.8 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|284161454|ref|YP_003400077.1| - 0.038 13.7 0.9 0.073 12.8 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF258 PF03193.11 gi|284161454|ref|YP_003400077.1| - 0.043 13.0 0.0 0.079 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|284161454|ref|YP_003400077.1| - 0.05 14.4 3.7 0.066 14.0 1.0 2.4 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.1 gi|284161454|ref|YP_003400077.1| - 0.051 13.1 0.1 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|284161454|ref|YP_003400077.1| - 0.068 12.8 0.8 0.15 11.7 0.1 1.9 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF3584 PF12128.3 gi|284161454|ref|YP_003400077.1| - 0.077 10.3 0.0 0.11 9.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA PF00004.24 gi|284161454|ref|YP_003400077.1| - 0.082 13.1 0.1 0.28 11.3 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Acetyltransf_9 PF13527.1 gi|284161454|ref|YP_003400077.1| - 0.086 12.6 0.2 0.55 10.0 0.0 2.4 3 0 0 3 3 2 0 Acetyltransferase (GNAT) domain FtsK_SpoIIIE PF01580.13 gi|284161454|ref|YP_003400077.1| - 0.087 12.2 0.1 0.77 9.1 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family Desulfoferrod_N PF06397.7 gi|284161454|ref|YP_003400077.1| - 0.094 12.1 3.9 1.1 8.6 2.7 2.5 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain PRK PF00485.13 gi|284161454|ref|YP_003400077.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family IpaB_EvcA PF03278.8 gi|284161454|ref|YP_003400077.1| - 0.12 11.5 0.0 0.27 10.4 0.0 1.5 1 0 0 1 1 1 0 IpaB/EvcA family AAA_33 PF13671.1 gi|284161454|ref|YP_003400077.1| - 0.16 11.8 0.3 0.43 10.4 0.2 1.8 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|284161454|ref|YP_003400077.1| - 0.24 11.3 1.7 0.58 10.0 0.6 2.0 2 0 0 2 2 2 0 AAA domain Zn_Tnp_IS1595 PF12760.2 gi|284161454|ref|YP_003400077.1| - 0.96 9.3 3.8 29 4.5 2.7 2.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284161454|ref|YP_003400077.1| - 0.99 9.4 5.4 3.9 7.5 3.7 2.0 1 1 0 1 1 1 0 Zinc ribbon domain DUF1610 PF07754.6 gi|284161454|ref|YP_003400077.1| - 1.5 9.0 6.7 6.4 6.9 4.7 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF1610) ASCH PF04266.9 gi|284161455|ref|YP_003400078.1| - 9e-11 42.1 1.0 1.1e-10 41.8 0.7 1.1 1 0 0 1 1 1 1 ASCH domain Sdh5 PF03937.11 gi|284161455|ref|YP_003400078.1| - 0.0023 17.5 0.0 0.0031 17.1 0.0 1.2 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase RNA_binding PF01877.12 gi|284161456|ref|YP_003400079.1| - 7.9e-22 77.5 2.4 7.9e-22 77.5 1.7 3.1 3 1 0 3 3 3 1 RNA binding AAA_18 PF13238.1 gi|284161456|ref|YP_003400079.1| - 1.3e-16 61.0 1.1 2.4e-16 60.2 0.1 1.8 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|284161456|ref|YP_003400079.1| - 1.3e-11 45.3 4.5 1.2e-10 42.2 3.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284161456|ref|YP_003400079.1| - 4.8e-07 29.7 0.0 7.1e-06 25.9 0.0 2.6 2 2 1 3 3 3 1 AAA domain Cytidylate_kin2 PF13189.1 gi|284161456|ref|YP_003400079.1| - 0.0011 18.9 3.8 0.0019 18.1 1.2 2.2 1 1 1 2 2 2 1 Cytidylate kinase-like family ADK PF00406.17 gi|284161456|ref|YP_003400079.1| - 0.02 14.8 0.4 0.042 13.7 0.3 1.9 1 1 0 1 1 1 0 Adenylate kinase Siah-Interact_N PF09032.6 gi|284161456|ref|YP_003400079.1| - 0.039 13.9 1.0 0.039 13.9 0.7 1.9 2 0 0 2 2 2 0 Siah interacting protein, N terminal SRP54 PF00448.17 gi|284161456|ref|YP_003400079.1| - 0.13 11.6 0.5 13 5.1 0.0 2.5 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain Band_7 PF01145.20 gi|284161456|ref|YP_003400079.1| - 0.34 10.7 3.0 0.49 10.2 1.6 1.6 1 1 1 2 2 2 0 SPFH domain / Band 7 family HD_3 PF13023.1 gi|284161457|ref|YP_003400080.1| - 1.8e-21 76.5 1.0 4.4e-21 75.3 0.7 1.5 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|284161457|ref|YP_003400080.1| - 0.0029 16.9 0.0 0.0035 16.6 0.0 1.3 1 0 0 1 1 1 1 HDOD domain DrrA_P4M PF14860.1 gi|284161457|ref|YP_003400080.1| - 0.038 13.7 0.7 0.052 13.2 0.5 1.2 1 0 0 1 1 1 0 DrrA phosphatidylinositol 4-phosphate binding domain HD PF01966.17 gi|284161457|ref|YP_003400080.1| - 0.065 13.2 1.7 0.12 12.3 1.2 1.6 1 1 0 1 1 1 0 HD domain TcdA_TcdB_pore PF12920.2 gi|284161457|ref|YP_003400080.1| - 0.081 10.8 0.0 0.083 10.7 0.0 1.1 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain Mut7-C PF01927.11 gi|284161458|ref|YP_003400081.1| - 1.1e-36 126.0 0.4 1.2e-36 125.8 0.3 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain zf-TFIIB PF13453.1 gi|284161458|ref|YP_003400081.1| - 0.14 11.3 2.1 1.6 7.9 1.5 2.5 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-met PF12874.2 gi|284161458|ref|YP_003400081.1| - 1.1 9.5 3.3 20 5.5 0.2 2.7 3 0 0 3 3 3 0 Zinc-finger of C2H2 type HhH-GPD PF00730.20 gi|284161459|ref|YP_003400082.1| - 1.2e-26 93.0 0.0 1.8e-26 92.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|284161459|ref|YP_003400082.1| - 4.9e-09 35.3 2.7 1.1e-08 34.2 0.0 2.8 3 1 1 4 4 4 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|284161459|ref|YP_003400082.1| - 0.00027 20.9 5.6 0.00047 20.2 3.9 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|284161459|ref|YP_003400082.1| - 0.00087 19.4 0.9 0.018 15.2 0.4 2.4 1 1 1 2 2 2 2 Helix-hairpin-helix domain DUF2400 PF09674.5 gi|284161459|ref|YP_003400082.1| - 0.0012 18.5 0.1 0.21 11.2 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF2400) DUF3349 PF11829.3 gi|284161459|ref|YP_003400082.1| - 0.082 13.3 0.1 0.21 12.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) eIF-5_eIF-2B PF01873.12 gi|284161460|ref|YP_003400083.1| - 1.7e-46 156.9 0.3 1.9e-46 156.7 0.2 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 DZR PF12773.2 gi|284161460|ref|YP_003400083.1| - 0.0093 15.7 0.1 0.016 15.0 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284161460|ref|YP_003400083.1| - 0.016 14.3 0.9 3.9 6.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Poly_export PF02563.11 gi|284161460|ref|YP_003400083.1| - 0.017 14.8 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis/export protein Prok-RING_1 PF14446.1 gi|284161460|ref|YP_003400083.1| - 0.028 14.1 0.5 3.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Lenti_VIF_2 PF07401.7 gi|284161460|ref|YP_003400083.1| - 0.04 13.0 0.0 0.044 12.9 0.0 1.1 1 0 0 1 1 1 0 Bovine Lentivirus VIF protein Myb_DNA-bind_6 PF13921.1 gi|284161460|ref|YP_003400083.1| - 0.04 14.0 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 Myb-like DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|284161460|ref|YP_003400083.1| - 0.041 13.3 5.6 0.24 10.9 3.7 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|284161460|ref|YP_003400083.1| - 0.042 14.1 1.9 1.2 9.5 1.0 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|284161460|ref|YP_003400083.1| - 0.048 13.1 0.9 8.7 5.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284161460|ref|YP_003400083.1| - 0.049 12.9 0.4 0.1 11.9 0.3 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding PHD_3 PF13922.1 gi|284161460|ref|YP_003400083.1| - 0.056 13.6 1.0 7.1 6.9 0.0 2.3 2 0 0 2 2 2 0 PHD domain of transcriptional enhancer, Asx GATA PF00320.22 gi|284161460|ref|YP_003400083.1| - 0.073 12.4 0.1 0.16 11.3 0.1 1.6 1 0 0 1 1 1 0 GATA zinc finger Zn_ribbon_recom PF13408.1 gi|284161460|ref|YP_003400083.1| - 0.16 12.2 1.3 9.1 6.6 0.2 2.5 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain HypA PF01155.14 gi|284161460|ref|YP_003400083.1| - 0.21 11.3 2.2 4.3 7.0 1.6 2.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|284161460|ref|YP_003400083.1| - 0.33 10.6 3.4 2.4 7.9 2.4 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284161460|ref|YP_003400083.1| - 0.43 10.1 3.9 3.3 7.3 2.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-CCHC_6 PF15288.1 gi|284161460|ref|YP_003400083.1| - 2.5 7.8 5.4 14 5.4 0.3 2.4 2 0 0 2 2 2 0 Zinc knuckle DUF35_N PF12172.3 gi|284161460|ref|YP_003400083.1| - 6.1 6.8 6.8 6.2 6.8 0.2 3.0 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF424 PF04242.8 gi|284161461|ref|YP_003400084.1| - 6.5e-31 106.2 0.6 7.2e-31 106.1 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) FumaraseC_C PF10415.4 gi|284161461|ref|YP_003400084.1| - 0.069 13.2 0.3 0.21 11.6 0.1 1.8 1 1 1 2 2 2 0 Fumarase C C-terminus Iso_dh PF00180.15 gi|284161461|ref|YP_003400084.1| - 0.092 11.6 0.1 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 Isocitrate/isopropylmalate dehydrogenase ResIII PF04851.10 gi|284161462|ref|YP_003400085.1| - 4.9e-22 78.6 0.3 3.5e-21 75.8 0.0 2.5 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|284161462|ref|YP_003400085.1| - 1.6e-18 66.7 0.0 2e-16 59.9 0.0 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|284161462|ref|YP_003400085.1| - 1.3e-10 40.9 0.0 4.6e-10 39.2 0.0 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|284161462|ref|YP_003400085.1| - 0.00022 20.1 0.1 0.0018 17.1 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain AAA_11 PF13086.1 gi|284161462|ref|YP_003400085.1| - 0.00036 20.2 1.2 0.4 10.2 0.0 3.2 2 1 1 3 3 3 2 AAA domain AAA_30 PF13604.1 gi|284161462|ref|YP_003400085.1| - 0.0015 18.1 0.0 0.0031 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|284161462|ref|YP_003400085.1| - 0.0029 16.6 0.0 0.0053 15.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) 2-Hacid_dh PF00389.25 gi|284161462|ref|YP_003400085.1| - 0.0096 15.3 0.0 0.03 13.7 0.0 1.8 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PhoH PF02562.11 gi|284161462|ref|YP_003400085.1| - 0.026 13.7 0.0 0.062 12.5 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.1 gi|284161462|ref|YP_003400085.1| - 0.043 13.9 0.0 0.17 11.9 0.0 2.0 1 0 0 1 1 1 0 AAA domain AP_endonuc_2 PF01261.19 gi|284161463|ref|YP_003400086.1| - 9.9e-06 24.9 0.0 1.1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Nol1_Nop2_Fmu PF01189.12 gi|284161464|ref|YP_003400087.1| - 6.6e-44 150.3 0.0 8.5e-44 150.0 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family NusB PF01029.13 gi|284161464|ref|YP_003400087.1| - 3.7e-15 56.0 0.8 8.9e-15 54.8 0.5 1.6 1 0 0 1 1 1 1 NusB family Methyltransf_31 PF13847.1 gi|284161464|ref|YP_003400087.1| - 7e-12 45.1 0.7 1.4e-10 40.9 0.0 2.7 2 1 0 3 3 3 1 Methyltransferase domain MTS PF05175.9 gi|284161464|ref|YP_003400087.1| - 1.1e-07 31.3 0.0 2.9e-07 30.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.14 gi|284161464|ref|YP_003400087.1| - 9.7e-07 28.5 0.0 3e-06 26.9 0.0 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|284161464|ref|YP_003400087.1| - 1.4e-05 24.3 0.1 0.0037 16.4 0.0 2.5 2 0 0 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|284161464|ref|YP_003400087.1| - 1.7e-05 25.3 0.0 0.0001 22.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284161464|ref|YP_003400087.1| - 0.0003 21.2 1.0 0.12 12.8 0.0 3.3 4 0 0 4 4 3 1 Methyltransferase domain Fibrillarin PF01269.12 gi|284161464|ref|YP_003400087.1| - 0.00063 18.7 0.3 0.0048 15.8 0.0 2.2 2 0 0 2 2 2 1 Fibrillarin Methyltransf_26 PF13659.1 gi|284161464|ref|YP_003400087.1| - 0.013 15.5 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284161464|ref|YP_003400087.1| - 0.016 15.5 0.0 0.06 13.7 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|284161464|ref|YP_003400087.1| - 0.028 13.9 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Gallidermin PF02052.10 gi|284161464|ref|YP_003400087.1| - 0.042 13.9 0.1 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Gallidermin Cortex-I_coil PF09304.5 gi|284161464|ref|YP_003400087.1| - 0.082 12.9 2.2 0.56 10.2 0.3 2.6 2 0 0 2 2 2 0 Cortexillin I, coiled coil Cullin_Nedd8 PF10557.4 gi|284161464|ref|YP_003400087.1| - 0.14 11.9 5.3 0.46 10.3 0.0 3.3 4 0 0 4 4 4 0 Cullin protein neddylation domain Tic20 PF09685.5 gi|284161465|ref|YP_003400088.1| - 2.8e-14 52.9 4.5 3.4e-14 52.7 3.1 1.1 1 0 0 1 1 1 1 Tic20-like protein DUF3963 PF13124.1 gi|284161465|ref|YP_003400088.1| - 5.1 6.9 6.1 51 3.7 2.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3963) Thymidylate_kin PF02223.12 gi|284161466|ref|YP_003400089.1| - 4.8e-55 185.8 0.3 5.5e-55 185.6 0.2 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|284161466|ref|YP_003400089.1| - 5e-10 39.7 1.6 1.3e-09 38.3 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|284161466|ref|YP_003400089.1| - 1.7e-08 34.5 0.0 2.2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284161466|ref|YP_003400089.1| - 2.3e-07 31.6 0.5 6.9e-07 30.1 0.4 1.8 1 1 0 1 1 1 1 AAA domain dNK PF01712.14 gi|284161466|ref|YP_003400089.1| - 2.7e-07 30.5 4.2 1.2e-06 28.4 0.2 2.6 2 1 1 3 3 3 1 Deoxynucleoside kinase PPK2 PF03976.9 gi|284161466|ref|YP_003400089.1| - 1.1e-06 28.1 0.3 1.3e-05 24.6 0.0 2.6 1 1 2 3 3 3 1 Polyphosphate kinase 2 (PPK2) MobB PF03205.9 gi|284161466|ref|YP_003400089.1| - 4.4e-06 26.4 0.0 8.3e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|284161466|ref|YP_003400089.1| - 4.8e-06 26.5 0.0 9.7e-06 25.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain Herpes_TK PF00693.13 gi|284161466|ref|YP_003400089.1| - 0.00016 20.9 0.0 0.056 12.6 0.0 2.1 2 0 0 2 2 2 1 Thymidine kinase from herpesvirus SKI PF01202.17 gi|284161466|ref|YP_003400089.1| - 0.00024 21.0 0.5 0.0012 18.7 0.4 1.9 1 1 0 1 1 1 1 Shikimate kinase CbiA PF01656.18 gi|284161466|ref|YP_003400089.1| - 0.00045 19.6 0.4 0.00066 19.1 0.3 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.2 gi|284161466|ref|YP_003400089.1| - 0.00097 18.6 0.0 0.0011 18.4 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain Arch_ATPase PF01637.13 gi|284161466|ref|YP_003400089.1| - 0.0013 18.5 3.6 0.0022 17.7 2.5 1.5 1 1 0 1 1 1 1 Archaeal ATPase KTI12 PF08433.5 gi|284161466|ref|YP_003400089.1| - 0.0014 17.9 0.1 0.0045 16.2 0.1 1.9 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|284161466|ref|YP_003400089.1| - 0.0014 18.5 1.7 0.0058 16.5 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284161466|ref|YP_003400089.1| - 0.0016 18.6 0.0 0.0041 17.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|284161466|ref|YP_003400089.1| - 0.0025 17.5 2.1 0.0043 16.7 0.1 2.2 2 2 0 2 2 2 1 NTPase ADK PF00406.17 gi|284161466|ref|YP_003400089.1| - 0.003 17.4 0.1 0.02 14.7 0.1 2.1 1 1 0 1 1 1 1 Adenylate kinase KaiC PF06745.8 gi|284161466|ref|YP_003400089.1| - 0.0033 16.5 0.2 0.54 9.3 0.0 2.2 2 0 0 2 2 2 1 KaiC NACHT PF05729.7 gi|284161466|ref|YP_003400089.1| - 0.0034 17.0 0.0 0.01 15.5 0.0 1.8 2 0 0 2 2 1 1 NACHT domain AAA_16 PF13191.1 gi|284161466|ref|YP_003400089.1| - 0.0037 17.2 0.0 0.0068 16.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|284161466|ref|YP_003400089.1| - 0.0079 16.3 0.2 0.03 14.5 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|284161466|ref|YP_003400089.1| - 0.008 15.8 0.5 0.31 10.6 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 DUF87 PF01935.12 gi|284161466|ref|YP_003400089.1| - 0.012 15.4 2.6 0.093 12.5 1.8 2.5 1 1 0 1 1 1 0 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|284161466|ref|YP_003400089.1| - 0.015 14.9 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|284161466|ref|YP_003400089.1| - 0.017 15.4 0.0 0.018 15.3 0.0 1.4 1 1 0 1 1 1 0 ABC transporter LpxK PF02606.9 gi|284161466|ref|YP_003400089.1| - 0.021 13.7 0.1 0.041 12.8 0.0 1.5 2 0 0 2 2 1 0 Tetraacyldisaccharide-1-P 4'-kinase Arg_repressor PF01316.16 gi|284161466|ref|YP_003400089.1| - 0.024 14.1 0.1 0.89 9.1 0.0 2.5 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain AAA_5 PF07728.9 gi|284161466|ref|YP_003400089.1| - 0.025 14.3 0.2 3.1 7.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|284161466|ref|YP_003400089.1| - 0.032 13.1 0.1 0.091 11.6 0.0 1.8 1 1 1 2 2 2 0 Type II/IV secretion system protein ArgK PF03308.11 gi|284161466|ref|YP_003400089.1| - 0.041 12.6 0.0 0.062 12.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein NB-ARC PF00931.17 gi|284161466|ref|YP_003400089.1| - 0.046 12.5 0.0 0.09 11.6 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.13 gi|284161466|ref|YP_003400089.1| - 0.052 13.0 0.0 0.073 12.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.15 gi|284161466|ref|YP_003400089.1| - 0.064 12.9 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Glyco_transf_4 PF13439.1 gi|284161466|ref|YP_003400089.1| - 0.07 12.8 0.0 0.14 11.8 0.0 1.6 2 0 0 2 2 1 0 Glycosyltransferase Family 4 SRP54 PF00448.17 gi|284161466|ref|YP_003400089.1| - 0.079 12.3 0.1 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|284161466|ref|YP_003400089.1| - 0.085 13.3 0.2 0.3 11.5 0.1 1.8 1 1 0 2 2 1 0 Miro-like protein Glyco_trans_4_2 PF13477.1 gi|284161466|ref|YP_003400089.1| - 0.099 12.4 0.7 2.1 8.1 0.0 2.4 2 1 1 3 3 3 0 Glycosyl transferase 4-like Abhydrolase_5 PF12695.2 gi|284161466|ref|YP_003400089.1| - 0.12 12.1 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family ATP_bind_1 PF03029.12 gi|284161466|ref|YP_003400089.1| - 0.13 11.8 0.1 0.59 9.6 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein TrbH PF07283.6 gi|284161466|ref|YP_003400089.1| - 0.13 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Conjugal transfer protein TrbH TrwB_AAD_bind PF10412.4 gi|284161466|ref|YP_003400089.1| - 0.15 10.6 0.0 0.42 9.1 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain IlvN PF07991.7 gi|284161467|ref|YP_003400090.1| - 6.7e-76 253.2 0.1 9.6e-76 252.7 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|284161467|ref|YP_003400090.1| - 9.4e-59 197.4 1.0 1.5e-58 196.8 0.7 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|284161467|ref|YP_003400090.1| - 1.7e-06 28.3 0.0 3.7e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|284161467|ref|YP_003400090.1| - 9.2e-06 24.9 0.0 1.6e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|284161467|ref|YP_003400090.1| - 0.00015 21.6 0.0 0.00034 20.4 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|284161467|ref|YP_003400090.1| - 0.00077 19.3 0.1 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|284161467|ref|YP_003400090.1| - 0.0099 15.6 0.0 2.6 7.7 0.0 2.4 1 1 1 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|284161467|ref|YP_003400090.1| - 0.046 13.8 0.0 0.18 11.9 0.0 1.8 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|284161467|ref|YP_003400090.1| - 0.06 12.7 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DZR PF12773.2 gi|284161468|ref|YP_003400091.1| - 0.0023 17.6 1.1 0.004 16.9 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|284161468|ref|YP_003400091.1| - 0.017 14.7 2.4 0.017 14.7 1.6 1.8 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family SapB_2 PF03489.12 gi|284161468|ref|YP_003400091.1| - 0.02 14.9 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 Saposin-like type B, region 2 TFIIS_C PF01096.13 gi|284161468|ref|YP_003400091.1| - 0.033 13.8 1.3 2.7 7.6 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.7 gi|284161468|ref|YP_003400091.1| - 0.046 13.4 1.0 1.8 8.3 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Peptidase_S30 PF01577.11 gi|284161468|ref|YP_003400091.1| - 0.053 12.9 0.1 0.062 12.6 0.1 1.1 1 0 0 1 1 1 0 Potyvirus P1 protease Prok-RING_1 PF14446.1 gi|284161468|ref|YP_003400091.1| - 0.053 13.2 0.8 0.096 12.4 0.6 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Cas_Cas4 PF01930.12 gi|284161468|ref|YP_003400091.1| - 0.17 11.8 0.1 0.17 11.8 0.1 1.6 1 1 1 2 2 2 0 Domain of unknown function DUF83 Zn-ribbon_8 PF09723.5 gi|284161468|ref|YP_003400091.1| - 0.22 11.4 7.6 1.2 9.2 5.3 2.0 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.3 gi|284161468|ref|YP_003400091.1| - 0.3 11.0 2.7 0.94 9.4 1.9 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|284161468|ref|YP_003400091.1| - 0.35 10.4 7.3 0.99 8.9 5.1 1.7 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284161468|ref|YP_003400091.1| - 0.43 9.9 3.4 3.6 6.9 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C3HC4_3 PF13920.1 gi|284161468|ref|YP_003400091.1| - 0.47 10.1 3.7 0.84 9.3 2.6 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.4 gi|284161468|ref|YP_003400091.1| - 1.2 8.8 7.9 0.62 9.8 0.4 2.6 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|284161468|ref|YP_003400091.1| - 1.4 8.2 6.9 2.9 7.2 4.7 1.6 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284161468|ref|YP_003400091.1| - 3.4 7.3 8.0 6.2e+02 0.0 5.6 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284161468|ref|YP_003400091.1| - 3.8 7.3 6.7 2.2 8.1 0.4 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|284161468|ref|YP_003400091.1| - 4 7.5 7.5 7.3 6.7 0.6 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|284161468|ref|YP_003400091.1| - 4.7 6.9 8.1 8.5e+02 -0.3 5.6 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-trcl PF13451.1 gi|284161468|ref|YP_003400091.1| - 5.6 6.6 10.2 1.5 8.4 1.9 2.3 1 1 1 2 2 2 0 Probable zinc-binding domain PvlArgDC PF01862.11 gi|284161469|ref|YP_003400092.1| - 4.3e-62 208.5 0.0 4.8e-62 208.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) PGK PF00162.14 gi|284161470|ref|YP_003400093.1| - 2.1e-112 375.4 2.8 2.4e-112 375.2 1.9 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase MMR_HSR1_C PF08438.5 gi|284161471|ref|YP_003400094.1| - 2.5e-35 121.0 0.0 4e-35 120.3 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|284161471|ref|YP_003400094.1| - 1.1e-16 60.7 0.0 3.1e-16 59.3 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|284161471|ref|YP_003400094.1| - 2.1e-15 56.2 0.1 4.5e-15 55.2 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|284161471|ref|YP_003400094.1| - 9.5e-08 31.4 0.2 4.4e-06 26.0 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|284161471|ref|YP_003400094.1| - 0.014 14.8 0.1 2 7.7 0.0 3.0 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain DUF2095 PF09868.4 gi|284161472|ref|YP_003400095.1| - 9.8e-11 41.5 0.3 1.2e-07 31.5 0.0 2.0 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2095) Pyr_redox_2 PF07992.9 gi|284161473|ref|YP_003400096.1| - 3.2e-39 134.9 0.0 7.4e-39 133.7 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284161473|ref|YP_003400096.1| - 2e-24 85.7 0.9 5e-20 71.6 0.9 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|284161473|ref|YP_003400096.1| - 1.6e-19 70.7 0.0 2.3e-15 57.2 0.0 2.9 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284161473|ref|YP_003400096.1| - 1e-16 60.7 4.8 1.5e-05 24.1 0.0 4.0 3 1 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|284161473|ref|YP_003400096.1| - 1e-11 43.9 0.1 3.8e-05 22.3 0.0 3.3 3 0 0 3 3 3 3 HI0933-like protein FAD_binding_2 PF00890.19 gi|284161473|ref|YP_003400096.1| - 2.1e-09 36.7 4.1 8.4e-05 21.5 0.0 4.3 3 1 2 5 5 5 2 FAD binding domain NAD_binding_8 PF13450.1 gi|284161473|ref|YP_003400096.1| - 8.8e-09 35.2 0.0 0.00053 19.9 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|284161473|ref|YP_003400096.1| - 1.7e-08 33.9 0.3 0.004 16.2 0.0 2.7 3 1 1 4 4 3 2 FAD binding domain Thi4 PF01946.12 gi|284161473|ref|YP_003400096.1| - 6.4e-08 31.9 0.8 1.3e-05 24.4 0.0 3.0 2 1 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|284161473|ref|YP_003400096.1| - 1.4e-07 30.9 1.2 0.00033 19.8 0.0 3.1 2 1 1 3 3 3 1 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|284161473|ref|YP_003400096.1| - 1.4e-07 30.7 0.0 0.011 14.7 0.0 3.4 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|284161473|ref|YP_003400096.1| - 5.6e-07 28.7 0.5 0.004 16.0 0.0 3.6 4 0 0 4 4 4 1 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|284161473|ref|YP_003400096.1| - 7.3e-07 29.3 0.5 5e-05 23.5 0.2 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding IlvN PF07991.7 gi|284161473|ref|YP_003400096.1| - 3.9e-05 23.0 0.0 0.002 17.5 0.0 2.4 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain PALP PF00291.20 gi|284161473|ref|YP_003400096.1| - 5.7e-05 22.4 0.1 0.03 13.5 0.0 2.3 1 1 1 2 2 2 2 Pyridoxal-phosphate dependent enzyme Lycopene_cycl PF05834.7 gi|284161473|ref|YP_003400096.1| - 7.3e-05 21.8 0.9 0.01 14.7 0.0 3.2 3 1 1 4 4 4 1 Lycopene cyclase protein Shikimate_DH PF01488.15 gi|284161473|ref|YP_003400096.1| - 0.00054 20.0 0.1 0.0043 17.1 0.0 2.3 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|284161473|ref|YP_003400096.1| - 0.0013 18.5 0.3 2.3 7.9 0.0 3.3 3 0 0 3 3 3 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|284161473|ref|YP_003400096.1| - 0.0015 18.1 0.2 0.33 10.4 0.0 2.7 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|284161473|ref|YP_003400096.1| - 0.0016 18.7 0.0 0.11 12.7 0.0 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain ThiF PF00899.16 gi|284161473|ref|YP_003400096.1| - 0.0026 17.5 0.1 1.3 8.8 0.0 2.6 2 1 0 2 2 2 1 ThiF family Oxidored_nitro PF00148.14 gi|284161473|ref|YP_003400096.1| - 0.0052 15.4 0.0 0.0085 14.7 0.0 1.3 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 3HCDH_N PF02737.13 gi|284161473|ref|YP_003400096.1| - 0.0073 15.9 0.2 3.2 7.3 0.0 2.5 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|284161473|ref|YP_003400096.1| - 0.034 14.2 0.0 10 6.2 0.0 2.5 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|284161473|ref|YP_003400096.1| - 0.039 13.0 0.0 6.2 5.9 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|284161473|ref|YP_003400096.1| - 0.051 13.5 0.3 10 6.1 0.0 3.2 3 0 0 3 3 3 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|284161473|ref|YP_003400096.1| - 0.055 12.8 0.5 4.3 6.6 0.2 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|284161473|ref|YP_003400096.1| - 0.074 12.4 0.1 0.34 10.3 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|284161473|ref|YP_003400096.1| - 0.089 11.4 1.0 6.9 5.1 0.1 2.8 2 1 1 3 3 3 0 Tryptophan halogenase NAD_Gly3P_dh_N PF01210.18 gi|284161473|ref|YP_003400096.1| - 0.11 12.2 0.0 5.7 6.6 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkH PF02386.11 gi|284161474|ref|YP_003400097.1| - 2.3e-58 197.4 21.4 2.3e-58 197.4 14.8 2.3 1 1 1 2 2 2 2 Cation transport protein RHH_1 PF01402.16 gi|284161475|ref|YP_003400098.1| - 8.5e-05 22.2 1.3 0.00013 21.6 0.2 1.7 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|284161475|ref|YP_003400098.1| - 0.00017 21.7 0.0 0.00018 21.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) RuvA_C PF07499.8 gi|284161475|ref|YP_003400098.1| - 0.021 14.9 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 RuvA, C-terminal domain DUF469 PF04320.9 gi|284161475|ref|YP_003400098.1| - 0.14 12.9 0.0 0.14 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein with unknown function (DUF469) Tubulin PF00091.20 gi|284161476|ref|YP_003400099.1| - 2.7e-35 122.1 1.1 1.2e-34 120.0 0.8 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|284161476|ref|YP_003400099.1| - 2.2e-32 111.0 0.6 5.8e-32 109.6 0.1 2.0 2 0 0 2 2 2 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|284161476|ref|YP_003400099.1| - 0.019 14.7 0.9 0.072 12.9 0.1 2.2 2 1 0 2 2 2 0 ThiF family CoA_binding PF02629.14 gi|284161476|ref|YP_003400099.1| - 0.084 13.4 4.5 1.3 9.5 0.0 3.4 4 0 0 4 4 4 0 CoA binding domain DS PF01916.12 gi|284161477|ref|YP_003400100.1| - 2.8e-91 305.7 0.1 3.1e-91 305.5 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Bac_DNA_binding PF00216.16 gi|284161477|ref|YP_003400100.1| - 0.06 13.3 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial DNA-binding protein PTS_2-RNA PF01885.11 gi|284161478|ref|YP_003400101.1| - 5.8e-45 152.8 0.0 6.9e-45 152.6 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.15 gi|284161478|ref|YP_003400101.1| - 0.0021 17.5 0.0 0.003 17.0 0.0 1.2 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain SUI1 PF01253.17 gi|284161478|ref|YP_003400101.1| - 0.016 14.9 0.0 8.1 6.3 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor SUI1 Pyr_redox_2 PF07992.9 gi|284161479|ref|YP_003400102.1| - 3.1e-15 56.5 0.0 3.8e-09 36.7 0.0 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284161479|ref|YP_003400102.1| - 4.8e-07 28.5 0.3 0.016 13.6 0.1 2.4 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|284161479|ref|YP_003400102.1| - 1.2e-05 24.4 0.1 0.0067 15.3 0.0 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|284161479|ref|YP_003400102.1| - 8.5e-05 22.5 1.6 0.0047 16.9 0.2 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|284161479|ref|YP_003400102.1| - 8.6e-05 21.5 0.0 0.13 11.1 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|284161479|ref|YP_003400102.1| - 0.0017 18.1 0.4 3.8 7.2 0.0 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|284161479|ref|YP_003400102.1| - 0.0021 17.1 0.1 0.0021 17.1 0.1 2.1 3 0 0 3 3 3 1 Thi4 family Pyr_redox PF00070.22 gi|284161479|ref|YP_003400102.1| - 0.003 17.9 3.0 0.023 15.0 0.1 3.3 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284161479|ref|YP_003400102.1| - 0.0038 16.1 1.6 0.064 12.0 0.4 2.5 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|284161479|ref|YP_003400102.1| - 0.018 15.1 0.8 3.4 7.6 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|284161479|ref|YP_003400102.1| - 0.025 13.6 0.3 0.14 11.1 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain Aldose_epim PF01263.15 gi|284161479|ref|YP_003400102.1| - 0.087 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Aldose 1-epimerase Pterin_bind PF00809.17 gi|284161480|ref|YP_003400103.1| - 1.7e-12 47.1 2.5 1.1e-11 44.5 1.7 2.3 1 1 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|284161480|ref|YP_003400103.1| - 2.6e-10 40.0 0.0 6.4e-10 38.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) GcpE PF04551.9 gi|284161480|ref|YP_003400103.1| - 0.0092 14.8 0.2 0.035 12.9 0.1 1.9 1 1 0 2 2 2 1 GcpE protein tRNA-synt_1 PF00133.17 gi|284161481|ref|YP_003400104.1| - 2.4e-211 702.9 8.0 3.7e-211 702.2 5.6 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|284161481|ref|YP_003400104.1| - 1.1e-31 109.6 2.0 1.1e-31 109.6 1.4 2.1 3 0 0 3 3 3 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|284161481|ref|YP_003400104.1| - 1e-27 96.8 6.9 2.5e-09 36.2 0.1 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|284161481|ref|YP_003400104.1| - 5.5e-07 28.9 1.4 0.00011 21.4 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain DALR_1 PF05746.10 gi|284161481|ref|YP_003400104.1| - 0.0078 16.1 0.0 0.082 12.8 0.0 2.4 2 0 0 2 2 2 1 DALR anticodon binding domain PAC2 PF09754.4 gi|284161482|ref|YP_003400105.1| - 3.6e-57 193.7 0.0 4.2e-57 193.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Prefoldin PF02996.12 gi|284161482|ref|YP_003400105.1| - 0.042 13.5 1.1 0.074 12.6 0.8 1.3 1 0 0 1 1 1 0 Prefoldin subunit NAD_binding_10 PF13460.1 gi|284161482|ref|YP_003400105.1| - 0.045 13.7 0.0 0.11 12.4 0.0 1.8 1 1 0 1 1 1 0 NADH(P)-binding BLOC1_2 PF10046.4 gi|284161482|ref|YP_003400105.1| - 0.051 13.7 1.0 0.096 12.8 0.7 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 WAPL PF07814.8 gi|284161482|ref|YP_003400105.1| - 0.053 12.2 0.1 0.071 11.8 0.1 1.1 1 0 0 1 1 1 0 Wings apart-like protein regulation of heterochromatin DNA_pol3_a_NII PF11490.3 gi|284161482|ref|YP_003400105.1| - 0.054 13.1 2.8 0.093 12.3 1.9 1.3 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus II bZIP_2 PF07716.10 gi|284161482|ref|YP_003400105.1| - 1.1 9.1 3.8 1.8 8.4 2.6 1.3 1 0 0 1 1 1 0 Basic region leucine zipper Nop10p PF04135.7 gi|284161483|ref|YP_003400106.1| - 1.2e-26 92.2 3.6 1.3e-26 92.0 2.5 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family PolC_DP2 PF03833.8 gi|284161483|ref|YP_003400106.1| - 6.1e-05 20.9 0.2 6.1e-05 20.9 0.2 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 NOB1_Zn_bind PF08772.6 gi|284161483|ref|YP_003400106.1| - 0.0007 19.3 0.8 0.071 12.9 0.5 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|284161483|ref|YP_003400106.1| - 0.001 18.1 7.9 0.02 14.0 5.5 2.2 1 1 0 1 1 1 1 zinc-ribbon domain RecR PF02132.10 gi|284161483|ref|YP_003400106.1| - 0.0036 16.7 0.4 0.0047 16.3 0.3 1.2 1 0 0 1 1 1 1 RecR protein DUF1272 PF06906.6 gi|284161483|ref|YP_003400106.1| - 0.0048 16.7 1.8 0.0061 16.3 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) DZR PF12773.2 gi|284161483|ref|YP_003400106.1| - 0.0075 16.0 2.9 0.012 15.4 2.0 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|284161483|ref|YP_003400106.1| - 0.019 14.4 3.5 1 8.9 0.1 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2HC_2 PF13913.1 gi|284161483|ref|YP_003400106.1| - 0.034 13.8 7.6 0.48 10.1 1.3 2.5 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Elf1 PF05129.8 gi|284161483|ref|YP_003400106.1| - 0.056 13.1 0.0 0.11 12.1 0.0 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DUF35_N PF12172.3 gi|284161483|ref|YP_003400106.1| - 0.063 13.2 3.5 0.22 11.4 2.3 2.0 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|284161483|ref|YP_003400106.1| - 0.074 12.8 5.2 0.57 10.0 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284161483|ref|YP_003400106.1| - 0.083 12.2 7.7 0.58 9.5 0.7 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Ribosomal_L32p PF01783.18 gi|284161483|ref|YP_003400106.1| - 0.084 13.0 0.9 0.17 12.0 0.7 1.6 1 0 0 1 1 1 0 Ribosomal L32p protein family DUF2072 PF09845.4 gi|284161483|ref|YP_003400106.1| - 0.088 12.7 2.4 0.16 11.9 1.7 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-NADH-PPase PF09297.6 gi|284161483|ref|YP_003400106.1| - 0.096 12.2 5.1 0.91 9.0 0.2 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|284161483|ref|YP_003400106.1| - 0.1 12.1 10.4 4.1 7.0 7.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|284161483|ref|YP_003400106.1| - 0.1 12.3 6.7 2.3 7.9 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ADK_lid PF05191.9 gi|284161483|ref|YP_003400106.1| - 0.11 12.2 2.2 5 6.8 0.0 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-B_box PF00643.19 gi|284161483|ref|YP_003400106.1| - 0.12 12.2 1.2 0.18 11.7 0.9 1.3 1 0 0 1 1 1 0 B-box zinc finger Nudix_N_2 PF14803.1 gi|284161483|ref|YP_003400106.1| - 0.14 11.8 2.2 2.2 8.0 0.1 2.2 1 1 1 2 2 2 0 Nudix N-terminal DUF1610 PF07754.6 gi|284161483|ref|YP_003400106.1| - 0.16 12.1 11.7 0.68 10.1 1.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TFIIS_C PF01096.13 gi|284161483|ref|YP_003400106.1| - 0.16 11.6 2.7 10 5.8 0.2 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|284161483|ref|YP_003400106.1| - 0.2 11.6 3.7 3.5 7.6 0.1 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-FPG_IleRS PF06827.9 gi|284161483|ref|YP_003400106.1| - 0.2 11.3 7.1 2.7 7.7 5.1 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-H2C2_2 PF13465.1 gi|284161483|ref|YP_003400106.1| - 0.29 11.4 4.9 2.7 8.4 0.3 2.5 2 0 0 2 2 2 0 Zinc-finger double domain Cys_rich_KTR PF14205.1 gi|284161483|ref|YP_003400106.1| - 0.39 10.2 5.7 1.4 8.4 0.3 2.7 2 1 1 3 3 3 0 Cysteine-rich KTR Cys_rich_CPCC PF14206.1 gi|284161483|ref|YP_003400106.1| - 0.39 10.3 3.0 8.8 5.9 2.1 2.2 1 1 0 1 1 1 0 Cysteine-rich CPCC PhnA_Zn_Ribbon PF08274.7 gi|284161483|ref|YP_003400106.1| - 0.4 10.4 3.6 11 5.9 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Sgf11 PF08209.6 gi|284161483|ref|YP_003400106.1| - 0.42 9.9 4.9 3.4 7.0 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) A2L_zn_ribbon PF08792.5 gi|284161483|ref|YP_003400106.1| - 0.43 10.0 2.3 3.8 7.0 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain CpXC PF14353.1 gi|284161483|ref|YP_003400106.1| - 0.66 9.9 2.7 5.8 6.8 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zf-tcix PF14952.1 gi|284161483|ref|YP_003400106.1| - 0.84 9.0 10.3 0.22 10.8 1.7 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ISL3 PF14690.1 gi|284161483|ref|YP_003400106.1| - 0.87 9.6 0.2 0.87 9.6 0.2 2.7 3 1 1 4 4 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|284161483|ref|YP_003400106.1| - 0.98 9.4 6.9 6.5 6.7 0.5 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DUF1936 PF09151.5 gi|284161483|ref|YP_003400106.1| - 1.1 8.8 5.3 7.5 6.1 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1936) zinc_ribbon_5 PF13719.1 gi|284161483|ref|YP_003400106.1| - 1.4 8.5 5.1 14 5.3 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284161483|ref|YP_003400106.1| - 1.5 8.5 5.1 14 5.4 0.5 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|284161483|ref|YP_003400106.1| - 1.7 8.3 4.3 7.1 6.3 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Ribosomal_S27 PF01599.14 gi|284161483|ref|YP_003400106.1| - 1.9 8.3 6.5 1.3 8.9 0.3 2.4 1 1 1 2 2 2 0 Ribosomal protein S27a zf-CCHC PF00098.18 gi|284161483|ref|YP_003400106.1| - 2 8.4 8.3 5.9 7.0 0.3 2.3 2 0 0 2 2 2 0 Zinc knuckle Auto_anti-p27 PF06677.7 gi|284161483|ref|YP_003400106.1| - 2.3 8.0 5.8 7.2 6.4 4.1 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Lar_restr_allev PF14354.1 gi|284161483|ref|YP_003400106.1| - 2.4 8.5 5.2 6.4 7.1 0.2 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2H2 PF00096.21 gi|284161483|ref|YP_003400106.1| - 3.3 8.2 6.3 19 5.8 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-TFIIB PF13453.1 gi|284161483|ref|YP_003400106.1| - 4.2 6.6 6.2 5.4 6.2 0.4 2.2 1 1 2 3 3 3 0 Transcription factor zinc-finger DUF329 PF03884.9 gi|284161483|ref|YP_003400106.1| - 4.5 6.9 6.6 10 5.7 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-dskA_traR PF01258.12 gi|284161483|ref|YP_003400106.1| - 7.6 6.3 7.2 5.6 6.8 0.2 2.5 2 1 1 3 3 2 0 Prokaryotic dksA/traR C4-type zinc finger UPF0051 PF01458.12 gi|284161484|ref|YP_003400107.1| - 9.4e-57 192.1 0.0 1.1e-56 191.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0181 PF03701.9 gi|284161484|ref|YP_003400107.1| - 0.042 13.1 0.0 0.1 11.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) DUF4258 PF14076.1 gi|284161484|ref|YP_003400107.1| - 0.22 11.5 1.0 1.2 9.2 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4258) ABC_tran PF00005.22 gi|284161485|ref|YP_003400108.1| - 1.1e-23 84.0 0.0 1.6e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284161485|ref|YP_003400108.1| - 3.2e-09 37.1 3.4 6.5e-07 29.5 2.4 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284161485|ref|YP_003400108.1| - 2.2e-06 27.0 0.1 0.0095 15.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284161485|ref|YP_003400108.1| - 3.6e-05 23.2 0.0 6.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284161485|ref|YP_003400108.1| - 0.00011 22.6 0.1 0.00035 20.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284161485|ref|YP_003400108.1| - 0.00092 18.6 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|284161485|ref|YP_003400108.1| - 0.0029 17.3 0.0 0.0044 16.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase DUF258 PF03193.11 gi|284161485|ref|YP_003400108.1| - 0.003 16.7 0.0 0.0052 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|284161485|ref|YP_003400108.1| - 0.0058 16.0 0.3 0.018 14.4 0.2 1.9 1 1 0 1 1 1 1 AAA-like domain ATP-synt_ab PF00006.20 gi|284161485|ref|YP_003400108.1| - 0.026 14.0 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.1 gi|284161485|ref|YP_003400108.1| - 0.029 12.8 0.0 0.24 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|284161485|ref|YP_003400108.1| - 0.038 13.8 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284161485|ref|YP_003400108.1| - 0.038 14.8 0.1 0.061 14.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|284161485|ref|YP_003400108.1| - 0.04 14.1 0.0 0.073 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|284161485|ref|YP_003400108.1| - 0.066 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|284161485|ref|YP_003400108.1| - 0.082 13.0 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284161485|ref|YP_003400108.1| - 0.097 12.9 0.4 2.3 8.5 0.3 2.2 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|284161485|ref|YP_003400108.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.1 gi|284161485|ref|YP_003400108.1| - 0.14 11.1 0.1 0.19 10.7 0.1 1.2 1 0 0 1 1 1 0 AAA ATPase domain Metallophos_2 PF12850.2 gi|284161486|ref|YP_003400109.1| - 1.5e-24 86.5 0.2 2.2e-24 86.0 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|284161486|ref|YP_003400109.1| - 4.2e-07 29.3 0.6 0.015 14.4 0.0 2.2 1 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|284161486|ref|YP_003400109.1| - 6.3e-06 25.7 4.1 2.6e-05 23.6 0.2 2.5 1 1 0 2 2 2 1 Calcineurin-like phosphoesterase DUF447 PF04289.7 gi|284161487|ref|YP_003400110.1| - 4.2e-37 127.4 0.0 4.8e-37 127.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.11 gi|284161488|ref|YP_003400111.1| - 2e-61 207.6 0.0 2.3e-61 207.4 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF2665 PF11654.3 gi|284161488|ref|YP_003400111.1| - 0.055 13.0 0.3 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2665) DUF43 PF01861.11 gi|284161489|ref|YP_003400112.1| - 9.5e-106 352.2 0.4 1.4e-105 351.6 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_31 PF13847.1 gi|284161489|ref|YP_003400112.1| - 6.9e-05 22.4 0.1 0.00015 21.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284161489|ref|YP_003400112.1| - 0.00052 20.0 0.0 0.00086 19.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain HTH_45 PF14947.1 gi|284161489|ref|YP_003400112.1| - 0.001 18.8 0.1 0.0024 17.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|284161489|ref|YP_003400112.1| - 0.0014 18.9 0.0 0.0026 18.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HemN_C PF06969.11 gi|284161489|ref|YP_003400112.1| - 0.0024 17.8 0.0 0.0071 16.3 0.0 1.8 1 0 0 1 1 1 1 HemN C-terminal domain AAA_assoc_C PF09821.4 gi|284161489|ref|YP_003400112.1| - 0.0068 16.6 0.2 0.018 15.2 0.0 1.8 2 0 0 2 2 2 1 C-terminal AAA-associated domain Methyltransf_25 PF13649.1 gi|284161489|ref|YP_003400112.1| - 0.0076 16.6 0.0 0.016 15.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|284161489|ref|YP_003400112.1| - 0.035 13.6 0.0 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 N6-adenineMlase PF10237.4 gi|284161489|ref|YP_003400112.1| - 0.082 12.5 2.0 0.54 9.9 0.1 2.2 2 0 0 2 2 2 0 Probable N6-adenine methyltransferase FmrO PF07091.6 gi|284161489|ref|YP_003400112.1| - 0.11 11.4 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) PUA PF01472.15 gi|284161490|ref|YP_003400113.1| - 2.2e-18 65.7 3.6 3.5e-18 65.0 2.5 1.3 1 0 0 1 1 1 1 PUA domain DUF1797 PF08796.5 gi|284161490|ref|YP_003400113.1| - 0.08 12.8 0.5 0.15 11.9 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1797) ACT PF01842.20 gi|284161491|ref|YP_003400114.1| - 1.2e-05 24.6 0.8 4.8e-05 22.7 0.1 2.1 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|284161491|ref|YP_003400114.1| - 0.00074 18.9 0.0 0.0017 17.8 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|284161491|ref|YP_003400114.1| - 0.0011 19.2 0.4 0.95 9.8 0.0 2.3 2 0 0 2 2 2 2 ACT domain HTH_11 PF08279.7 gi|284161491|ref|YP_003400114.1| - 0.14 11.8 0.0 0.5 10.0 0.0 1.9 1 0 0 1 1 1 0 HTH domain TraB PF01963.12 gi|284161492|ref|YP_003400115.1| - 9.5e-51 172.7 0.0 1.2e-50 172.3 0.0 1.1 1 0 0 1 1 1 1 TraB family DUF399 PF04187.8 gi|284161492|ref|YP_003400115.1| - 0.013 15.0 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF399 ABC2_membrane_4 PF12730.2 gi|284161492|ref|YP_003400115.1| - 2.1 7.4 14.4 1.2 8.1 0.2 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein AMP-binding PF00501.23 gi|284161493|ref|YP_003400116.1| - 1.4e-13 50.0 0.3 2.5e-13 49.2 0.0 1.5 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C_2 PF14535.1 gi|284161493|ref|YP_003400116.1| - 4.2e-07 29.9 0.0 2.9e-06 27.2 0.0 2.3 1 1 0 1 1 1 1 AMP-binding enzyme C-terminal domain LuxE PF04443.7 gi|284161493|ref|YP_003400116.1| - 4.7e-06 25.5 0.5 4.7e-05 22.2 0.1 2.0 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE PRC PF05239.11 gi|284161493|ref|YP_003400116.1| - 0.012 15.4 0.1 2.3 8.1 0.0 2.9 2 0 0 2 2 2 0 PRC-barrel domain GH3 PF03321.8 gi|284161493|ref|YP_003400116.1| - 0.029 12.8 0.0 0.046 12.2 0.0 1.2 1 0 0 1 1 1 0 GH3 auxin-responsive promoter PetM PF08041.6 gi|284161494|ref|YP_003400117.1| - 0.0019 17.6 0.3 0.0055 16.1 0.2 1.9 1 0 0 1 1 1 1 PetM family of cytochrome b6f complex subunit 7 Presenilin PF01080.12 gi|284161494|ref|YP_003400117.1| - 3.5 6.3 17.1 0.31 9.8 4.7 2.2 1 1 1 2 2 2 0 Presenilin Lactamase_B_3 PF13483.1 gi|284161495|ref|YP_003400118.1| - 5.3e-12 45.7 0.1 8.8e-12 45.0 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|284161495|ref|YP_003400118.1| - 1.9e-09 37.3 0.2 6.3e-09 35.6 0.1 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284161495|ref|YP_003400118.1| - 0.00036 20.2 3.7 0.004 16.8 0.8 2.3 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Fe-ADH PF00465.14 gi|284161496|ref|YP_003400119.1| - 2.3e-74 250.2 0.0 2.9e-74 249.9 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|284161496|ref|YP_003400119.1| - 3.5e-12 46.1 1.0 1.5e-10 40.8 0.2 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DNA_methylase PF00145.12 gi|284161497|ref|YP_003400120.1| - 1e-57 195.7 0.0 3e-41 141.6 0.0 2.1 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|284161497|ref|YP_003400120.1| - 0.003 17.5 0.0 0.0068 16.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|284161497|ref|YP_003400120.1| - 0.0066 16.0 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Iso_dh PF00180.15 gi|284161498|ref|YP_003400121.1| - 1.1e-104 350.2 0.0 1.3e-104 349.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase MazG-like PF12643.2 gi|284161498|ref|YP_003400121.1| - 0.015 15.1 0.0 0.042 13.7 0.0 1.7 2 0 0 2 2 2 0 MazG-like family F420_oxidored PF03807.12 gi|284161499|ref|YP_003400122.1| - 5.8e-20 71.5 0.4 4.5e-19 68.6 0.0 2.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|284161499|ref|YP_003400122.1| - 2.4e-06 27.6 0.0 3.9e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|284161499|ref|YP_003400122.1| - 0.00058 19.7 0.0 0.0011 18.7 0.0 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase adh_short PF00106.20 gi|284161499|ref|YP_003400122.1| - 0.0013 18.6 0.2 0.0028 17.6 0.1 1.5 2 0 0 2 2 2 1 short chain dehydrogenase 3HCDH_N PF02737.13 gi|284161499|ref|YP_003400122.1| - 0.0048 16.5 0.0 0.0067 16.0 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|284161499|ref|YP_003400122.1| - 0.0052 17.0 0.0 0.024 14.9 0.0 1.9 1 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|284161499|ref|YP_003400122.1| - 0.017 15.1 0.4 1.6 8.8 0.0 2.4 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|284161499|ref|YP_003400122.1| - 0.022 13.9 0.0 0.04 13.1 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family CoA_binding PF02629.14 gi|284161499|ref|YP_003400122.1| - 0.031 14.7 0.8 4.9 7.7 0.0 2.4 2 1 0 2 2 2 0 CoA binding domain IlvN PF07991.7 gi|284161499|ref|YP_003400122.1| - 0.033 13.5 0.0 0.06 12.7 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ApbA PF02558.11 gi|284161499|ref|YP_003400122.1| - 0.046 13.1 0.4 0.095 12.1 0.2 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|284161499|ref|YP_003400122.1| - 0.054 12.6 0.0 0.087 11.9 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glu_synthase PF01645.12 gi|284161500|ref|YP_003400123.1| - 6e-11 41.8 0.1 6.3e-08 31.9 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase Gln-synt_C PF00120.19 gi|284161501|ref|YP_003400124.1| - 8.8e-87 290.5 0.0 1.1e-86 290.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|284161501|ref|YP_003400124.1| - 2.9e-21 74.8 0.0 1.4e-20 72.6 0.0 2.0 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain TFIIA_gamma_N PF02268.11 gi|284161501|ref|YP_003400124.1| - 0.0042 16.6 0.0 0.0083 15.6 0.0 1.4 1 0 0 1 1 1 1 Transcription initiation factor IIA, gamma subunit, helical domain UvsW PF11637.3 gi|284161502|ref|YP_003400125.1| - 1.2 8.9 3.8 28 4.4 0.0 2.5 2 1 0 2 2 2 0 ATP-dependant DNA helicase UvsW Ribosomal_L29 PF00831.18 gi|284161502|ref|YP_003400125.1| - 2.7 7.7 4.4 23 4.7 0.1 2.3 2 0 0 2 2 2 0 Ribosomal L29 protein UPF0047 PF01894.12 gi|284161503|ref|YP_003400126.1| - 4.9e-43 145.6 0.4 5.6e-43 145.5 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 EMG1 PF03587.9 gi|284161504|ref|YP_003400127.1| - 3.9e-46 156.8 0.3 6.5e-46 156.1 0.2 1.3 1 1 0 1 1 1 1 EMG1/NEP1 methyltransferase AIRS_C PF02769.17 gi|284161505|ref|YP_003400128.1| - 1.8e-19 70.2 0.1 4.2e-19 69.0 0.0 1.7 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|284161505|ref|YP_003400128.1| - 9.8e-16 57.7 0.9 2.1e-15 56.7 0.6 1.6 1 1 0 1 1 1 1 AIR synthase related protein, N-terminal domain CBS PF00571.23 gi|284161506|ref|YP_003400129.1| - 3.3e-26 90.7 5.7 1.6e-13 50.1 0.4 2.0 2 0 0 2 2 2 2 CBS domain RibD_C PF01872.12 gi|284161506|ref|YP_003400129.1| - 0.063 12.8 0.1 0.45 10.1 0.0 1.9 2 0 0 2 2 2 0 RibD C-terminal domain Acetyltransf_10 PF13673.1 gi|284161506|ref|YP_003400129.1| - 0.15 12.1 0.0 3.1 7.9 0.0 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain zf-RING_2 PF13639.1 gi|284161507|ref|YP_003400130.1| - 0.01 15.6 6.0 0.014 15.2 4.2 1.2 1 0 0 1 1 1 0 Ring finger domain C1_4 PF07975.7 gi|284161507|ref|YP_003400130.1| - 0.025 14.5 3.5 0.025 14.5 2.4 1.8 2 0 0 2 2 2 0 TFIIH C1-like domain C1_1 PF00130.17 gi|284161507|ref|YP_003400130.1| - 0.052 13.2 3.0 0.092 12.4 2.1 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FYVE_2 PF02318.11 gi|284161507|ref|YP_003400130.1| - 0.11 12.4 5.0 0.14 12.1 3.5 1.2 1 0 0 1 1 1 0 FYVE-type zinc finger zf-C4pol PF14260.1 gi|284161507|ref|YP_003400130.1| - 0.14 12.1 3.0 2 8.4 2.1 2.1 1 1 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta DUF3039 PF11238.3 gi|284161507|ref|YP_003400130.1| - 0.5 9.8 4.3 4.9 6.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) Cys_rich_CPCC PF14206.1 gi|284161507|ref|YP_003400130.1| - 0.61 9.6 4.7 0.35 10.4 1.6 1.8 2 0 0 2 2 2 0 Cysteine-rich CPCC zf-C3HC4_3 PF13920.1 gi|284161507|ref|YP_003400130.1| - 1 9.0 8.5 0.26 10.9 1.5 2.4 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) IBR PF01485.16 gi|284161507|ref|YP_003400130.1| - 1 9.2 8.3 1 9.2 4.2 2.0 2 1 0 2 2 2 0 IBR domain DZR PF12773.2 gi|284161507|ref|YP_003400130.1| - 1.2 8.9 7.4 8.3 6.3 5.2 2.3 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|284161507|ref|YP_003400130.1| - 1.5 8.3 9.0 4.7 6.8 2.1 2.9 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|284161507|ref|YP_003400130.1| - 1.9 8.3 7.6 3 7.6 2.8 2.4 2 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.1 gi|284161507|ref|YP_003400130.1| - 2 7.7 10.9 1.5 8.0 1.7 2.5 2 1 0 2 2 2 0 zinc-ribbon domain HNH PF01844.18 gi|284161507|ref|YP_003400130.1| - 2.3 8.1 5.3 6 6.8 1.1 2.5 2 1 0 2 2 2 0 HNH endonuclease Prok-RING_1 PF14446.1 gi|284161507|ref|YP_003400130.1| - 4.3 7.1 12.6 0.19 11.4 3.9 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-UDP PF14569.1 gi|284161507|ref|YP_003400130.1| - 4.6 7.0 7.2 9.7 6.0 5.0 1.7 1 1 0 1 1 1 0 Zinc-binding RING-finger RNHCP PF12647.2 gi|284161507|ref|YP_003400130.1| - 5.9 6.7 6.6 12 5.7 1.7 2.2 1 1 1 2 2 2 0 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|284161507|ref|YP_003400130.1| - 6.1 6.2 13.1 4 6.8 0.1 2.9 2 1 1 3 3 3 0 TFIIB zinc-binding zf-B_box PF00643.19 gi|284161507|ref|YP_003400130.1| - 6.3 6.7 11.6 32 4.5 4.9 2.7 2 1 0 2 2 2 0 B-box zinc finger NAD_binding_8 PF13450.1 gi|284161508|ref|YP_003400131.1| - 0.00011 22.1 0.1 0.00051 20.0 0.0 2.3 3 1 0 3 3 3 1 NAD(P)-binding Rossmann-like domain OTCace PF00185.19 gi|284161509|ref|YP_003400132.1| - 2.5e-56 189.8 0.3 4.4e-56 189.1 0.1 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|284161509|ref|YP_003400132.1| - 1e-53 180.8 0.0 1.6e-53 180.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Put_Phosphatase PF06888.7 gi|284161509|ref|YP_003400132.1| - 0.04 13.0 0.0 0.19 10.9 0.0 1.9 2 0 0 2 2 2 0 Putative Phosphatase Alba PF01918.16 gi|284161510|ref|YP_003400133.1| - 5.9e-19 67.4 1.1 6.1e-19 67.3 0.2 1.4 2 0 0 2 2 2 1 Alba Rpp20 PF12328.3 gi|284161510|ref|YP_003400133.1| - 0.0011 18.6 0.7 0.0023 17.5 0.5 1.6 1 1 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P DUF217 PF02697.9 gi|284161512|ref|YP_003400135.1| - 1.4e-05 25.2 3.0 1.6e-05 25.0 2.1 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|284161512|ref|YP_003400135.1| - 1.8e-05 24.4 1.1 3.5e-05 23.5 0.6 1.7 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family Rab5-bind PF09311.6 gi|284161512|ref|YP_003400135.1| - 0.02 14.7 0.1 0.025 14.5 0.1 1.0 1 0 0 1 1 1 0 Rabaptin-like protein RHH_3 PF12651.2 gi|284161512|ref|YP_003400135.1| - 0.03 14.0 1.0 0.059 13.1 0.1 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix domain MatP PF06303.7 gi|284161512|ref|YP_003400135.1| - 0.046 13.6 0.3 0.056 13.3 0.2 1.2 1 0 0 1 1 1 0 Organiser of macrodomain of Terminus of chromosome MAD PF05557.8 gi|284161512|ref|YP_003400135.1| - 0.049 11.7 0.6 0.052 11.6 0.4 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF4298 PF14131.1 gi|284161512|ref|YP_003400135.1| - 0.053 13.3 0.4 0.085 12.7 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) TMF_DNA_bd PF12329.3 gi|284161512|ref|YP_003400135.1| - 0.056 13.2 1.3 0.083 12.7 0.9 1.3 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding G-gamma PF00631.17 gi|284161512|ref|YP_003400135.1| - 0.082 12.6 0.1 0.1 12.3 0.1 1.1 1 0 0 1 1 1 0 GGL domain TPR_MLP1_2 PF07926.7 gi|284161512|ref|YP_003400135.1| - 0.085 12.6 0.4 0.095 12.4 0.2 1.0 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Rootletin PF15035.1 gi|284161512|ref|YP_003400135.1| - 0.089 12.7 0.4 0.1 12.6 0.3 1.0 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Prefoldin_2 PF01920.15 gi|284161512|ref|YP_003400135.1| - 0.2 11.4 2.9 0.26 11.0 2.0 1.2 1 0 0 1 1 1 0 Prefoldin subunit RBD-FIP PF09457.5 gi|284161512|ref|YP_003400135.1| - 3.5 7.5 8.1 39 4.1 3.4 2.8 2 1 0 2 2 2 0 FIP domain DUF2400 PF09674.5 gi|284161513|ref|YP_003400136.1| - 1.5e-24 87.0 0.1 2.4e-24 86.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2400) DUF3467 PF11950.3 gi|284161513|ref|YP_003400136.1| - 0.11 12.4 0.2 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3467) dCMP_cyt_deam_1 PF00383.17 gi|284161514|ref|YP_003400137.1| - 5e-26 90.3 0.6 2.8e-16 58.9 0.2 2.5 2 0 0 2 2 2 2 Cytidine and deoxycytidylate deaminase zinc-binding region Hint_2 PF13403.1 gi|284161514|ref|YP_003400137.1| - 1.5e-08 34.6 0.0 3.1e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 Hint domain LAGLIDADG_3 PF14528.1 gi|284161514|ref|YP_003400137.1| - 3.3e-05 24.0 0.0 0.34 11.1 0.0 2.7 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|284161514|ref|YP_003400137.1| - 0.00017 20.5 0.4 0.018 13.9 0.0 2.4 1 1 1 2 2 2 1 Intein splicing domain APOBEC_N PF08210.6 gi|284161514|ref|YP_003400137.1| - 0.0011 18.6 0.4 0.0022 17.6 0.3 1.5 1 1 0 1 1 1 1 APOBEC-like N-terminal domain PT-HINT PF07591.6 gi|284161514|ref|YP_003400137.1| - 0.0085 15.9 1.3 0.5 10.2 0.0 3.1 3 0 0 3 3 3 1 Pretoxin HINT domain XOO_2897-deam PF14440.1 gi|284161514|ref|YP_003400137.1| - 0.013 15.1 0.1 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase Vint PF14623.1 gi|284161514|ref|YP_003400137.1| - 0.029 13.8 0.2 0.06 12.8 0.1 1.5 1 0 0 1 1 1 0 Hint-domain MafB19-deam PF14437.1 gi|284161514|ref|YP_003400137.1| - 0.031 13.9 0.5 0.064 12.8 0.3 1.4 1 0 0 1 1 1 0 MafB19-like deaminase WhiA_N PF10298.4 gi|284161514|ref|YP_003400137.1| - 0.052 13.4 0.4 0.27 11.1 0.0 2.3 3 0 0 3 3 3 0 WhiA N-terminal LAGLIDADG-like domain HTH_28 PF13518.1 gi|284161514|ref|YP_003400137.1| - 0.054 13.5 0.1 0.14 12.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|284161514|ref|YP_003400137.1| - 0.072 12.7 0.1 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Rad9_Rad53_bind PF08605.5 gi|284161514|ref|YP_003400137.1| - 0.084 12.6 0.8 0.66 9.7 0.1 2.3 2 0 0 2 2 2 0 Fungal Rad9-like Rad53-binding Bd3614-deam PF14439.1 gi|284161514|ref|YP_003400137.1| - 0.12 12.2 1.2 0.28 11.0 0.6 1.7 1 1 0 1 1 1 0 Bd3614-like deaminase DNA_pol_E_B PF04042.11 gi|284161515|ref|YP_003400138.1| - 2.3e-15 56.4 0.0 3.9e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|284161515|ref|YP_003400138.1| - 2.4e-12 46.9 0.0 6e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284161515|ref|YP_003400138.1| - 6.8e-07 28.8 2.5 2.8e-06 26.8 1.8 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti-codon PF01336.20 gi|284161515|ref|YP_003400138.1| - 0.00017 21.3 0.6 0.00038 20.2 0.4 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF3014 PF11219.3 gi|284161515|ref|YP_003400138.1| - 0.13 12.1 0.0 0.32 10.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3014) PetL PF05115.9 gi|284161516|ref|YP_003400139.1| - 0.11 12.4 0.3 0.11 12.4 0.2 1.9 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) Arg_repressor PF01316.16 gi|284161516|ref|YP_003400139.1| - 0.12 11.9 0.2 2.4 7.7 0.1 2.7 2 1 1 3 3 3 0 Arginine repressor, DNA binding domain DUF95 PF01944.12 gi|284161517|ref|YP_003400140.1| - 7.2e-36 123.4 13.5 8.5e-36 123.1 9.3 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 Alba PF01918.16 gi|284161518|ref|YP_003400141.1| - 4.1e-19 67.9 0.3 5.6e-19 67.5 0.2 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|284161518|ref|YP_003400141.1| - 0.0016 18.0 0.4 0.002 17.7 0.3 1.3 1 1 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P Mpt_N PF09176.6 gi|284161518|ref|YP_003400141.1| - 0.12 12.1 0.1 0.25 11.2 0.0 1.5 1 1 0 1 1 1 0 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal Anti-adapt_IraP PF10796.4 gi|284161518|ref|YP_003400141.1| - 0.2 12.0 1.0 8.2 6.8 0.2 2.1 2 0 0 2 2 2 0 Sigma-S stabilisation anti-adaptor protein Translin PF01997.11 gi|284161519|ref|YP_003400142.1| - 3.2e-26 92.1 0.4 5.9e-26 91.3 0.2 1.5 1 1 0 1 1 1 1 Translin family TPR_12 PF13424.1 gi|284161519|ref|YP_003400142.1| - 0.025 14.4 0.1 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat PTS_IIA PF02255.11 gi|284161519|ref|YP_003400142.1| - 0.027 14.3 2.3 0.21 11.4 0.0 2.8 3 0 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIA subunit DUF2738 PF10927.3 gi|284161519|ref|YP_003400142.1| - 0.056 12.4 0.0 0.1 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2738) DUF4363 PF14276.1 gi|284161519|ref|YP_003400142.1| - 0.081 12.6 1.3 1 9.0 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4363) PPDK_N PF01326.14 gi|284161519|ref|YP_003400142.1| - 0.085 11.8 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TPR_2 PF07719.12 gi|284161519|ref|YP_003400142.1| - 0.1 12.5 2.1 0.74 9.8 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat VWA_CoxE PF05762.9 gi|284161520|ref|YP_003400143.1| - 3.1e-08 33.0 0.1 5e-08 32.3 0.1 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|284161520|ref|YP_003400143.1| - 3.6e-08 33.6 0.8 7.5e-08 32.6 0.2 1.8 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|284161520|ref|YP_003400143.1| - 6.7e-05 22.6 1.5 0.00044 20.0 1.1 2.2 1 1 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|284161521|ref|YP_003400144.1| - 8.3e-19 67.6 0.0 3e-18 65.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|284161521|ref|YP_003400144.1| - 5.6e-06 25.9 0.0 1.5e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|284161521|ref|YP_003400144.1| - 2.9e-05 24.1 0.3 0.00013 22.0 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_2 PF07724.9 gi|284161521|ref|YP_003400144.1| - 0.0052 16.7 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Mg_chelatase_2 PF13335.1 gi|284161521|ref|YP_003400144.1| - 0.0087 16.4 0.4 0.047 14.0 0.1 2.4 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|284161521|ref|YP_003400144.1| - 0.011 15.9 0.0 0.034 14.3 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|284161521|ref|YP_003400144.1| - 0.023 13.9 0.0 0.046 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|284161521|ref|YP_003400144.1| - 0.026 14.6 0.1 0.25 11.4 0.0 2.4 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|284161521|ref|YP_003400144.1| - 0.031 13.9 6.1 0.086 12.5 0.1 2.3 2 0 0 2 2 2 0 Archaeal ATPase AAA_25 PF13481.1 gi|284161521|ref|YP_003400144.1| - 0.033 13.6 0.1 0.11 11.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain DUF2636 PF11120.3 gi|284161522|ref|YP_003400145.1| - 0.043 13.3 3.6 0.083 12.3 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2636) DUF3464 PF11947.3 gi|284161522|ref|YP_003400145.1| - 0.8 9.1 5.7 0.1 12.0 1.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3464) DUF3290 PF11694.3 gi|284161522|ref|YP_003400145.1| - 1.2 8.8 5.7 0.16 11.6 0.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) DUF4564 PF15169.1 gi|284161522|ref|YP_003400145.1| - 4.9 6.8 5.7 1.1 8.9 1.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4564) F420_ligase PF01996.11 gi|284161524|ref|YP_003400147.1| - 2.2e-70 236.2 0.1 2.6e-70 236.0 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase ATP-synt_F PF01990.12 gi|284161524|ref|YP_003400147.1| - 0.02 15.2 0.2 5.7 7.4 0.0 2.3 2 0 0 2 2 2 0 ATP synthase (F/14-kDa) subunit PWI PF01480.12 gi|284161524|ref|YP_003400147.1| - 0.12 12.5 0.9 12 6.0 0.0 2.6 2 1 1 3 3 3 0 PWI domain TPP_enzyme_C PF02775.16 gi|284161525|ref|YP_003400148.1| - 2.8e-28 98.4 0.6 2.8e-28 98.4 0.4 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|284161525|ref|YP_003400148.1| - 2.2e-15 56.8 0.0 3.8e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|284161525|ref|YP_003400148.1| - 5.4e-09 35.2 10.7 1.1e-06 27.9 2.4 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284161525|ref|YP_003400148.1| - 1.3e-08 34.3 19.0 1.1e-06 28.2 2.5 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284161525|ref|YP_003400148.1| - 2.1e-08 33.7 10.2 4.5e-08 32.7 7.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284161525|ref|YP_003400148.1| - 6.2e-06 26.5 10.9 1.6e-05 25.1 7.6 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284161525|ref|YP_003400148.1| - 7.5e-06 25.5 11.6 0.0034 17.2 2.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|284161525|ref|YP_003400148.1| - 0.00013 21.5 0.1 0.00087 18.8 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_4 PF12800.2 gi|284161525|ref|YP_003400148.1| - 0.00015 21.8 14.0 0.031 14.5 2.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284161525|ref|YP_003400148.1| - 0.0011 18.8 8.3 0.0026 17.5 5.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284161525|ref|YP_003400148.1| - 0.0062 16.7 11.9 0.023 14.9 8.3 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284161525|ref|YP_003400148.1| - 0.018 15.0 11.4 0.077 13.0 7.9 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161525|ref|YP_003400148.1| - 0.019 15.6 11.0 0.032 14.9 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|284161525|ref|YP_003400148.1| - 0.69 10.5 8.7 0.13 12.8 1.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|284161525|ref|YP_003400148.1| - 1.2 9.5 13.6 1 9.7 1.7 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Peptidase_S24 PF00717.18 gi|284161526|ref|YP_003400149.1| - 2.3e-06 27.1 0.5 6e-06 25.8 0.3 1.7 1 1 0 1 1 1 1 Peptidase S24-like Fucose_iso_C PF02952.12 gi|284161527|ref|YP_003400150.1| - 6.1e-07 29.0 0.3 2.4e-06 27.1 0.2 1.9 1 1 0 1 1 1 1 L-fucose isomerase, C-terminal domain DUF1843 PF08898.5 gi|284161527|ref|YP_003400150.1| - 0.11 12.5 0.1 0.26 11.3 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1843) IGPD PF00475.13 gi|284161528|ref|YP_003400151.1| - 7.2e-49 165.3 2.0 1.4e-48 164.4 1.4 1.5 1 1 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|284161529|ref|YP_003400152.1| - 1.6e-63 214.0 3.2 1.7e-63 213.9 2.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|284161529|ref|YP_003400152.1| - 7.5e-06 24.6 1.5 7.2e-05 21.4 0.1 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|284161529|ref|YP_003400152.1| - 3.3e-05 23.2 1.5 0.088 12.0 0.2 2.2 2 0 0 2 2 2 2 PcrB family NMO PF03060.10 gi|284161529|ref|YP_003400152.1| - 8.7e-05 21.8 0.2 0.00032 19.9 0.1 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase Dus PF01207.12 gi|284161529|ref|YP_003400152.1| - 9.3e-05 21.4 0.1 0.00064 18.6 0.0 1.9 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|284161529|ref|YP_003400152.1| - 0.00033 19.6 0.1 0.00063 18.7 0.0 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase IGPS PF00218.16 gi|284161529|ref|YP_003400152.1| - 0.00039 19.5 0.1 0.0032 16.5 0.0 2.2 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.12 gi|284161529|ref|YP_003400152.1| - 0.00087 18.4 0.7 0.0025 16.9 0.1 1.9 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI G3P_antiterm PF04309.7 gi|284161529|ref|YP_003400152.1| - 0.0024 16.9 0.1 0.53 9.3 0.0 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator NanE PF04131.9 gi|284161529|ref|YP_003400152.1| - 0.003 16.5 0.2 0.046 12.6 0.1 2.3 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|284161529|ref|YP_003400152.1| - 0.0084 14.9 0.2 0.013 14.3 0.1 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|284161529|ref|YP_003400152.1| - 0.009 15.1 0.1 0.024 13.6 0.0 1.7 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG Ribul_P_3_epim PF00834.14 gi|284161529|ref|YP_003400152.1| - 0.033 13.2 0.2 0.46 9.5 0.0 2.3 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family IMPDH PF00478.20 gi|284161529|ref|YP_003400152.1| - 0.08 11.8 0.1 0.1 11.4 0.1 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain BON PF04972.12 gi|284161529|ref|YP_003400152.1| - 0.24 11.1 2.0 0.95 9.2 0.1 2.9 3 0 0 3 3 3 0 BON domain CBS PF00571.23 gi|284161530|ref|YP_003400153.1| - 2.7e-37 126.2 5.8 3.4e-18 65.1 0.4 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|284161530|ref|YP_003400153.1| - 7.4e-18 64.1 14.0 3.3e-11 42.4 3.7 3.4 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|284161530|ref|YP_003400153.1| - 1.6e-05 24.3 8.5 4.6e-05 22.8 5.8 1.9 1 1 0 1 1 1 1 Peptidase M50B-like DUF3267 PF11667.3 gi|284161530|ref|YP_003400153.1| - 1.1 9.4 12.9 0.028 14.6 3.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3267) Methyltransf_18 PF12847.2 gi|284161531|ref|YP_003400154.1| - 4.3e-07 30.4 0.0 8.3e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|284161531|ref|YP_003400154.1| - 1e-06 28.0 0.0 1.2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|284161531|ref|YP_003400154.1| - 2.9e-06 27.1 0.0 4.8e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|284161531|ref|YP_003400154.1| - 1.4e-05 24.1 0.0 2.2e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_11 PF08241.7 gi|284161531|ref|YP_003400154.1| - 3.7e-05 24.1 0.0 5.7e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284161531|ref|YP_003400154.1| - 4.6e-05 23.0 0.0 5.8e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284161531|ref|YP_003400154.1| - 7.3e-05 22.2 0.0 9.3e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|284161531|ref|YP_003400154.1| - 0.00029 20.4 0.0 0.00044 19.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.11 gi|284161531|ref|YP_003400154.1| - 0.00054 19.6 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|284161531|ref|YP_003400154.1| - 0.0057 16.6 0.0 0.0068 16.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284161531|ref|YP_003400154.1| - 0.011 16.1 0.0 0.02 15.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|284161531|ref|YP_003400154.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.12 gi|284161531|ref|YP_003400154.1| - 0.013 14.5 0.0 0.03 13.3 0.0 1.6 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_32 PF13679.1 gi|284161531|ref|YP_003400154.1| - 0.015 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|284161531|ref|YP_003400154.1| - 0.06 14.1 0.0 0.1 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|284161531|ref|YP_003400154.1| - 0.14 12.0 0.0 0.42 10.5 0.0 2.0 1 1 0 1 1 1 0 FtsJ-like methyltransferase Radical_SAM PF04055.16 gi|284161532|ref|YP_003400155.1| - 2e-11 44.3 0.6 5.6e-11 42.8 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.6 gi|284161532|ref|YP_003400155.1| - 4.9e-07 29.5 5.3 0.013 15.0 0.0 2.9 2 1 1 3 3 3 2 Domain of unknown function (DUF1848) Fer4_12 PF13353.1 gi|284161532|ref|YP_003400155.1| - 0.025 14.6 0.1 0.069 13.2 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain ABC_tran PF00005.22 gi|284161533|ref|YP_003400156.1| - 8.7e-32 110.2 0.0 1.3e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284161533|ref|YP_003400156.1| - 2.2e-17 63.9 2.9 9e-13 48.8 0.2 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|284161533|ref|YP_003400156.1| - 3.5e-11 42.8 1.1 2.7e-07 29.9 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|284161533|ref|YP_003400156.1| - 3.2e-06 26.5 0.3 0.00015 21.0 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|284161533|ref|YP_003400156.1| - 0.00015 21.5 0.3 0.00023 20.9 0.2 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|284161533|ref|YP_003400156.1| - 0.00038 20.8 2.2 0.0005 20.4 1.6 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284161533|ref|YP_003400156.1| - 0.0015 18.0 0.1 0.0028 17.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|284161533|ref|YP_003400156.1| - 0.0042 17.2 0.2 0.35 11.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|284161533|ref|YP_003400156.1| - 0.0055 16.5 0.6 0.068 13.0 0.2 2.6 1 1 1 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|284161533|ref|YP_003400156.1| - 0.0058 16.5 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|284161533|ref|YP_003400156.1| - 0.01 15.2 0.0 0.025 13.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|284161533|ref|YP_003400156.1| - 0.014 14.2 0.0 0.019 13.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain UPF0079 PF02367.12 gi|284161533|ref|YP_003400156.1| - 0.016 14.8 0.2 0.03 13.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SRPRB PF09439.5 gi|284161533|ref|YP_003400156.1| - 0.017 14.3 0.4 2 7.5 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PIF1 PF05970.9 gi|284161533|ref|YP_003400156.1| - 0.019 13.9 0.0 0.031 13.2 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_16 PF13191.1 gi|284161533|ref|YP_003400156.1| - 0.022 14.7 0.0 0.071 13.0 0.0 1.8 1 1 1 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|284161533|ref|YP_003400156.1| - 0.026 14.4 0.0 1.3 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain RecA PF00154.16 gi|284161533|ref|YP_003400156.1| - 0.03 13.4 0.0 0.049 12.6 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein DUF258 PF03193.11 gi|284161533|ref|YP_003400156.1| - 0.03 13.5 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RuvA_C PF07499.8 gi|284161533|ref|YP_003400156.1| - 0.03 14.4 0.0 0.32 11.1 0.0 2.4 2 0 0 2 2 2 0 RuvA, C-terminal domain MobB PF03205.9 gi|284161533|ref|YP_003400156.1| - 0.062 12.9 0.1 0.14 11.8 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.1 gi|284161533|ref|YP_003400156.1| - 0.077 11.4 0.2 2.4 6.4 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|284161533|ref|YP_003400156.1| - 0.14 11.5 0.4 1.3 8.4 0.2 2.1 2 1 0 2 2 2 0 AAA-like domain UBA_3 PF09288.5 gi|284161533|ref|YP_003400156.1| - 0.19 11.3 1.8 5.5 6.6 0.1 2.8 3 0 0 3 3 2 0 Fungal ubiquitin-associated domain AAA_18 PF13238.1 gi|284161533|ref|YP_003400156.1| - 0.37 11.1 2.3 3 8.1 1.6 2.2 1 1 0 1 1 1 0 AAA domain CbiQ PF02361.11 gi|284161534|ref|YP_003400157.1| - 6.6e-22 78.1 21.9 4.3e-19 68.9 15.2 2.3 1 1 0 1 1 1 1 Cobalt transport protein CarboxypepD_reg PF13620.1 gi|284161535|ref|YP_003400158.1| - 0.00014 21.8 0.1 0.00023 21.1 0.1 1.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|284161535|ref|YP_003400158.1| - 0.0062 16.5 0.0 0.0094 15.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) MG1 PF11974.3 gi|284161535|ref|YP_003400158.1| - 0.055 14.0 0.0 0.07 13.6 0.0 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain Cna_B PF05738.8 gi|284161535|ref|YP_003400158.1| - 0.1 12.4 2.2 0.23 11.2 0.1 2.1 2 0 0 2 2 2 0 Cna protein B-type domain Pollen_Ole_e_I PF01190.12 gi|284161535|ref|YP_003400158.1| - 0.11 12.2 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Pollen proteins Ole e I like CbiM PF01891.11 gi|284161536|ref|YP_003400159.1| - 3.4e-55 186.8 21.2 3.8e-55 186.6 14.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region MNHE PF01899.11 gi|284161536|ref|YP_003400159.1| - 1.2 8.8 12.7 1.2 8.7 3.1 2.6 2 1 1 3 3 3 0 Na+/H+ ion antiporter subunit TMEM220 PF15071.1 gi|284161536|ref|YP_003400159.1| - 4.4 7.8 7.7 0.68 10.4 0.7 2.7 1 1 1 2 2 2 0 Transmembrane family 220, helix 5TM-5TMR_LYT PF07694.7 gi|284161536|ref|YP_003400159.1| - 9.7 5.4 23.1 1.8 7.8 11.3 2.1 1 1 1 2 2 2 0 5TMR of 5TMR-LYT DUF4198 PF10670.4 gi|284161537|ref|YP_003400160.1| - 1.3e-26 93.9 0.3 2e-26 93.3 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) HSBP1 PF06825.7 gi|284161537|ref|YP_003400160.1| - 0.0076 15.8 0.1 0.013 15.0 0.1 1.3 1 0 0 1 1 1 1 Heat shock factor binding protein 1 TMF_DNA_bd PF12329.3 gi|284161537|ref|YP_003400160.1| - 0.026 14.3 0.5 0.054 13.2 0.4 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Cna_B PF05738.8 gi|284161537|ref|YP_003400160.1| - 0.048 13.4 0.2 0.13 12.0 0.0 1.7 2 0 0 2 2 2 0 Cna protein B-type domain DUF904 PF06005.7 gi|284161537|ref|YP_003400160.1| - 0.076 13.3 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Filamin PF00630.14 gi|284161537|ref|YP_003400160.1| - 0.077 13.5 0.0 0.22 12.1 0.0 1.7 2 0 0 2 2 2 0 Filamin/ABP280 repeat bZIP_1 PF00170.16 gi|284161537|ref|YP_003400160.1| - 0.083 12.8 0.1 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 bZIP transcription factor HR1 PF02185.11 gi|284161537|ref|YP_003400160.1| - 0.12 12.1 0.1 0.22 11.2 0.1 1.3 1 0 0 1 1 1 0 Hr1 repeat DUF4200 PF13863.1 gi|284161537|ref|YP_003400160.1| - 0.14 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) LPP PF04728.8 gi|284161537|ref|YP_003400160.1| - 0.15 11.8 0.1 0.28 11.0 0.1 1.3 1 0 0 1 1 1 0 Lipoprotein leucine-zipper DHO_dh PF01180.16 gi|284161538|ref|YP_003400161.1| - 4.7e-61 206.3 0.0 5.3e-61 206.1 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|284161538|ref|YP_003400161.1| - 1.9e-11 43.3 0.0 5.2e-11 41.9 0.0 1.6 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|284161538|ref|YP_003400161.1| - 1.3e-07 31.1 0.1 1.8e-06 27.3 0.0 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|284161538|ref|YP_003400161.1| - 2.4e-06 26.9 0.1 7.4e-06 25.3 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein DUF561 PF04481.7 gi|284161538|ref|YP_003400161.1| - 0.00088 18.2 0.1 0.0024 16.8 0.1 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF561) FMN_dh PF01070.13 gi|284161538|ref|YP_003400161.1| - 0.0041 16.0 0.1 0.0064 15.3 0.0 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|284161538|ref|YP_003400161.1| - 0.0051 15.7 0.0 0.009 14.9 0.0 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DUF3796 PF12676.2 gi|284161539|ref|YP_003400162.1| - 1.1e-06 28.8 9.4 1.1e-06 28.8 6.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3796) DUF1682 PF07946.9 gi|284161540|ref|YP_003400163.1| - 0.02 13.7 0.1 0.02 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) Y1_Tnp PF01797.11 gi|284161541|ref|YP_003400164.1| - 8.2e-39 132.2 0.1 9.5e-39 131.9 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|284161542|ref|YP_003400165.1| - 4.9e-55 186.3 2.3 6.4e-55 186.0 1.6 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|284161542|ref|YP_003400165.1| - 7.5e-22 76.7 0.2 1.4e-21 75.9 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|284161542|ref|YP_003400165.1| - 8.3e-07 28.2 0.3 1.9e-06 27.0 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.2 gi|284161542|ref|YP_003400165.1| - 0.0008 19.1 2.3 0.0018 18.0 1.6 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|284161542|ref|YP_003400165.1| - 0.042 13.6 0.6 0.075 12.8 0.4 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon C1_1 PF00130.17 gi|284161542|ref|YP_003400165.1| - 0.052 13.2 0.8 0.098 12.3 0.5 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.2 gi|284161542|ref|YP_003400165.1| - 0.18 11.6 0.7 0.33 10.7 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.13 gi|284161542|ref|YP_003400165.1| - 1.2 8.8 4.0 38 4.0 2.8 2.5 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|284161542|ref|YP_003400165.1| - 4.5 6.6 5.3 7.7 5.8 0.4 2.2 1 1 2 3 3 3 0 zinc-ribbon domain Toxin_12 PF07740.7 gi|284161543|ref|YP_003400166.1| - 0.11 13.0 6.3 0.48 10.9 4.4 2.3 1 0 0 1 1 1 0 Ion channel inhibitory toxin HIT PF01230.18 gi|284161544|ref|YP_003400167.1| - 5.1e-27 94.2 0.4 6e-27 94.0 0.3 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|284161544|ref|YP_003400167.1| - 2.7e-15 56.6 0.5 3.3e-15 56.3 0.3 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|284161544|ref|YP_003400167.1| - 6.1e-08 32.3 0.5 7.7e-08 32.0 0.3 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 GalP_UDP_tr_C PF02744.12 gi|284161544|ref|YP_003400167.1| - 0.089 12.3 0.1 0.13 11.7 0.1 1.3 1 1 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain DFP PF04127.10 gi|284161545|ref|YP_003400168.1| - 1.4e-54 184.5 0.1 1.2e-52 178.2 0.0 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|284161545|ref|YP_003400168.1| - 7.5e-29 100.0 0.4 1.9e-28 98.6 0.0 1.9 2 0 0 2 2 2 1 Flavoprotein NAD_binding_10 PF13460.1 gi|284161545|ref|YP_003400168.1| - 0.0014 18.6 0.0 0.072 13.0 0.0 2.4 2 0 0 2 2 2 1 NADH(P)-binding TrkA_N PF02254.13 gi|284161545|ref|YP_003400168.1| - 0.0042 17.0 0.0 0.055 13.4 0.0 2.5 2 0 0 2 2 2 1 TrkA-N domain NPV_P10 PF05531.7 gi|284161545|ref|YP_003400168.1| - 0.02 15.1 0.6 1.2 9.4 0.0 2.7 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Na_H_Exchanger PF00999.16 gi|284161546|ref|YP_003400169.1| - 1.9e-52 178.0 57.1 2.2e-52 177.8 39.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|284161547|ref|YP_003400170.1| - 2.4e-09 36.6 0.4 5.8e-08 32.2 0.0 3.1 3 0 0 3 3 3 1 TrkA-C domain Guanylate_cyc PF00211.15 gi|284161548|ref|YP_003400171.1| - 0.0078 15.5 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Adenylate and Guanylate cyclase catalytic domain DUF1931 PF09123.6 gi|284161548|ref|YP_003400171.1| - 0.062 13.2 0.2 6.9 6.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) GHMP_kinases_N PF00288.21 gi|284161549|ref|YP_003400172.1| - 3.4e-08 33.4 0.4 7.2e-08 32.3 0.2 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF1335 PF07056.6 gi|284161549|ref|YP_003400172.1| - 0.12 12.1 0.0 2.3 7.9 0.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1335) HTH_24 PF13412.1 gi|284161550|ref|YP_003400173.1| - 6.6e-16 57.4 0.5 1.2e-15 56.6 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284161550|ref|YP_003400173.1| - 1.3e-13 50.2 0.0 1.9e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|284161550|ref|YP_003400173.1| - 4e-06 26.4 0.0 8.3e-05 22.2 0.0 2.2 2 0 0 2 2 2 1 AsnC family MarR_2 PF12802.2 gi|284161550|ref|YP_003400173.1| - 7.2e-05 22.3 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284161550|ref|YP_003400173.1| - 0.00041 19.9 0.0 0.00074 19.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|284161550|ref|YP_003400173.1| - 0.00073 19.1 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|284161550|ref|YP_003400173.1| - 0.0017 18.6 0.0 0.0042 17.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|284161550|ref|YP_003400173.1| - 0.004 16.7 0.1 0.0064 16.1 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|284161550|ref|YP_003400173.1| - 0.004 16.9 0.0 0.0067 16.1 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Mga PF08280.6 gi|284161550|ref|YP_003400173.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.1 gi|284161550|ref|YP_003400173.1| - 0.017 14.3 0.0 0.045 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_37 PF13744.1 gi|284161550|ref|YP_003400173.1| - 0.022 14.5 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|284161550|ref|YP_003400173.1| - 0.026 14.1 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|284161550|ref|YP_003400173.1| - 0.041 13.8 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|284161550|ref|YP_003400173.1| - 0.042 13.5 0.0 0.082 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.5 gi|284161550|ref|YP_003400173.1| - 0.044 13.3 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|284161550|ref|YP_003400173.1| - 0.045 13.2 0.2 0.071 12.6 0.2 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.1 gi|284161550|ref|YP_003400173.1| - 0.05 13.7 0.0 0.077 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|284161550|ref|YP_003400173.1| - 0.053 13.3 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|284161550|ref|YP_003400173.1| - 0.054 13.3 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix Fe_dep_repress PF01325.14 gi|284161550|ref|YP_003400173.1| - 0.06 13.2 0.0 0.098 12.6 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|284161550|ref|YP_003400173.1| - 0.12 12.0 0.5 0.25 11.0 0.1 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB CDP-OH_P_transf PF01066.16 gi|284161551|ref|YP_003400174.1| - 3.5e-17 62.5 5.3 3.5e-17 62.5 3.7 1.5 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF1049 PF06305.6 gi|284161551|ref|YP_003400174.1| - 0.049 13.1 0.2 0.049 13.1 0.1 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF1049) DUF2878 PF11086.3 gi|284161551|ref|YP_003400174.1| - 0.21 11.5 3.6 0.13 12.2 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2878) ParA PF10609.4 gi|284161552|ref|YP_003400175.1| - 3.2e-31 107.0 0.0 5.3e-31 106.3 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|284161552|ref|YP_003400175.1| - 1.7e-13 50.4 0.0 2.7e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|284161552|ref|YP_003400175.1| - 8.1e-05 22.5 0.0 0.00043 20.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|284161552|ref|YP_003400175.1| - 0.0002 20.5 3.9 0.00039 19.5 1.1 2.3 2 1 0 2 2 2 1 Anion-transporting ATPase DUF258 PF03193.11 gi|284161552|ref|YP_003400175.1| - 0.0004 19.5 0.2 0.00069 18.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MipZ PF09140.6 gi|284161552|ref|YP_003400175.1| - 0.00074 18.6 0.0 0.0014 17.7 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ SRP54 PF00448.17 gi|284161552|ref|YP_003400175.1| - 0.0053 16.2 0.7 0.01 15.2 0.5 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|284161552|ref|YP_003400175.1| - 0.046 14.5 0.1 0.11 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|284161552|ref|YP_003400175.1| - 0.072 12.5 0.5 0.13 11.6 0.4 1.4 1 0 0 1 1 1 0 AAA-like domain Apolipoprotein PF01442.13 gi|284161552|ref|YP_003400175.1| - 0.34 10.3 2.2 0.24 10.9 0.5 1.4 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain CbiA PF01656.18 gi|284161553|ref|YP_003400176.1| - 2.4e-30 105.4 0.0 3e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_7 PF12838.2 gi|284161553|ref|YP_003400176.1| - 5.9e-11 42.5 4.1 3.2e-05 24.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284161553|ref|YP_003400176.1| - 8.6e-11 40.9 11.5 2.6e-06 26.8 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284161553|ref|YP_003400176.1| - 9.5e-08 31.7 8.7 2.3e-07 30.5 6.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284161553|ref|YP_003400176.1| - 3.3e-07 29.9 9.0 7.2e-07 28.9 6.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161553|ref|YP_003400176.1| - 8.1e-07 29.6 3.9 0.0081 16.8 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|284161553|ref|YP_003400176.1| - 4.6e-06 26.2 13.6 0.011 15.5 1.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284161553|ref|YP_003400176.1| - 2.1e-05 24.6 10.3 7.9e-05 22.8 7.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain ParA PF10609.4 gi|284161553|ref|YP_003400176.1| - 8.1e-05 22.4 0.4 0.00057 19.7 0.1 2.3 1 1 1 2 2 2 1 ParA/MinD ATPase like Fer4_2 PF12797.2 gi|284161553|ref|YP_003400176.1| - 0.00015 21.4 11.6 0.057 13.3 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284161553|ref|YP_003400176.1| - 0.0017 18.3 7.5 0.21 11.6 0.4 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|284161553|ref|YP_003400176.1| - 0.009 15.7 1.1 0.096 12.4 0.3 2.3 2 0 0 2 2 2 1 Part of AAA domain Fer4_11 PF13247.1 gi|284161553|ref|YP_003400176.1| - 0.0098 15.7 4.5 0.021 14.6 3.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain GTP_EFTU PF00009.22 gi|284161553|ref|YP_003400176.1| - 0.02 14.3 0.5 0.067 12.6 0.0 1.9 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain OmpH PF03938.9 gi|284161553|ref|YP_003400176.1| - 0.032 14.1 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Fer4_17 PF13534.1 gi|284161553|ref|YP_003400176.1| - 0.037 14.3 10.2 1 9.7 1.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain ArsA_ATPase PF02374.10 gi|284161553|ref|YP_003400176.1| - 0.037 13.0 7.6 0.2 10.6 2.7 2.3 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_16 PF13191.1 gi|284161553|ref|YP_003400176.1| - 0.095 12.6 0.1 0.27 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|284161553|ref|YP_003400176.1| - 0.1 12.1 0.6 0.53 9.8 0.2 2.0 2 0 0 2 2 2 0 AAA domain CoaE PF01121.15 gi|284161553|ref|YP_003400176.1| - 0.12 11.7 0.1 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Dephospho-CoA kinase Fer4_15 PF13459.1 gi|284161553|ref|YP_003400176.1| - 0.14 12.7 11.2 0.25 11.9 0.9 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|284161553|ref|YP_003400176.1| - 0.3 11.7 17.2 0.41 11.3 1.2 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|284161553|ref|YP_003400176.1| - 0.41 11.0 6.9 6.9 7.1 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|284161553|ref|YP_003400176.1| - 0.89 10.0 16.5 1.3 9.5 1.9 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain CbiA PF01656.18 gi|284161554|ref|YP_003400177.1| - 4.4e-29 101.2 0.0 6.1e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|284161554|ref|YP_003400177.1| - 2e-09 36.6 16.7 3.6e-06 26.3 2.1 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284161554|ref|YP_003400177.1| - 1.4e-05 24.8 7.9 1.4e-05 24.8 5.5 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284161554|ref|YP_003400177.1| - 1.7e-05 24.4 17.4 0.00064 19.4 2.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284161554|ref|YP_003400177.1| - 5.7e-05 23.4 10.5 5.7e-05 23.4 7.3 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain ParA PF10609.4 gi|284161554|ref|YP_003400177.1| - 8.8e-05 22.3 0.2 0.00026 20.7 0.0 1.8 2 0 0 2 2 2 1 ParA/MinD ATPase like Fer4_9 PF13187.1 gi|284161554|ref|YP_003400177.1| - 0.00018 21.7 10.2 0.00018 21.7 7.1 2.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284161554|ref|YP_003400177.1| - 0.00066 19.4 17.0 0.0058 16.4 2.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284161554|ref|YP_003400177.1| - 0.002 18.8 14.5 0.096 13.4 1.2 2.8 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain AAA_25 PF13481.1 gi|284161554|ref|YP_003400177.1| - 0.0021 17.4 0.0 0.0034 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|284161554|ref|YP_003400177.1| - 0.0035 16.4 0.4 0.37 9.8 0.4 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|284161554|ref|YP_003400177.1| - 0.0067 17.2 0.0 0.015 16.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain Fer4_15 PF13459.1 gi|284161554|ref|YP_003400177.1| - 0.027 15.0 6.7 3.1 8.4 1.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|284161554|ref|YP_003400177.1| - 0.037 13.8 12.8 0.035 13.9 6.8 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain AAA_31 PF13614.1 gi|284161554|ref|YP_003400177.1| - 0.049 13.5 0.0 0.4 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|284161554|ref|YP_003400177.1| - 0.16 11.1 0.9 0.24 10.5 0.6 1.2 1 0 0 1 1 1 0 PhoH-like protein Fer4_17 PF13534.1 gi|284161554|ref|YP_003400177.1| - 0.28 11.5 12.9 5.1e+02 1.1 8.9 2.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284161554|ref|YP_003400177.1| - 0.38 10.8 16.3 0.053 13.5 7.2 2.5 2 2 0 2 2 2 0 4Fe-4S dicluster domain Nitro_FeMo-Co PF02579.12 gi|284161555|ref|YP_003400178.1| - 1.6e-25 88.9 0.4 1.9e-25 88.7 0.3 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ACT PF01842.20 gi|284161556|ref|YP_003400179.1| - 7.2e-08 31.7 0.0 4.5e-07 29.2 0.0 2.1 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|284161556|ref|YP_003400179.1| - 8.4e-06 26.0 0.3 3.7e-05 23.9 0.2 2.1 1 1 0 1 1 1 1 ACT domain MobB PF03205.9 gi|284161557|ref|YP_003400180.1| - 3.9e-31 107.6 0.2 4.5e-31 107.4 0.2 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|284161557|ref|YP_003400180.1| - 0.03 14.3 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|284161557|ref|YP_003400180.1| - 0.032 13.9 0.1 0.034 13.8 0.1 1.3 1 1 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|284161557|ref|YP_003400180.1| - 0.06 14.1 0.1 0.081 13.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|284161557|ref|YP_003400180.1| - 0.06 13.2 1.3 0.14 12.0 0.9 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_21 PF13304.1 gi|284161557|ref|YP_003400180.1| - 0.095 12.6 2.8 0.17 11.7 1.9 1.5 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|284161557|ref|YP_003400180.1| - 0.11 12.9 0.4 0.23 11.9 0.3 1.7 1 1 0 1 1 1 0 Miro-like protein AAA_29 PF13555.1 gi|284161557|ref|YP_003400180.1| - 0.12 11.9 0.2 0.61 9.6 0.1 2.1 2 1 1 3 3 3 0 P-loop containing region of AAA domain YjeF_N PF03853.10 gi|284161557|ref|YP_003400180.1| - 0.15 11.6 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 YjeF-related protein N-terminus CbiA PF01656.18 gi|284161557|ref|YP_003400180.1| - 0.2 11.0 1.3 0.47 9.8 0.9 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Beta-Casp PF10996.3 gi|284161558|ref|YP_003400181.1| - 3.8e-36 123.7 0.0 1.4e-35 121.9 0.0 2.0 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|284161558|ref|YP_003400181.1| - 1.5e-24 86.7 0.1 2.6e-24 85.9 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|284161558|ref|YP_003400181.1| - 1.2e-15 57.0 0.0 3.2e-15 55.6 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|284161558|ref|YP_003400181.1| - 8.4e-08 31.9 0.0 1.9e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|284161558|ref|YP_003400181.1| - 2.2e-05 23.9 0.2 2.2e-05 23.9 0.1 3.4 3 0 0 3 3 3 1 KH domain KH_1 PF00013.24 gi|284161558|ref|YP_003400181.1| - 2.3e-05 23.9 0.9 9.1e-05 22.0 0.1 2.5 3 0 0 3 3 3 1 KH domain KH_4 PF13083.1 gi|284161558|ref|YP_003400181.1| - 8.5e-05 22.1 0.4 0.00038 20.0 0.1 2.2 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|284161558|ref|YP_003400181.1| - 0.00022 20.9 0.0 0.00044 19.9 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_3 PF13014.1 gi|284161558|ref|YP_003400181.1| - 0.038 13.6 0.6 0.17 11.6 0.4 2.2 1 0 0 1 1 1 0 KH domain Proteasome PF00227.21 gi|284161559|ref|YP_003400182.1| - 1.1e-55 187.8 0.2 1.3e-55 187.6 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit NAD_binding_5 PF07994.7 gi|284161560|ref|YP_003400183.1| - 1.5e-58 198.6 0.0 1.7e-58 198.4 0.0 1.0 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|284161560|ref|YP_003400183.1| - 1.1e-29 102.5 0.0 1.8e-29 101.8 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase tRNA-synt_1e PF01406.14 gi|284161561|ref|YP_003400184.1| - 3.8e-126 420.2 0.4 5.2e-126 419.8 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|284161561|ref|YP_003400184.1| - 1.1e-20 73.7 2.7 4.5e-10 38.7 0.5 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|284161561|ref|YP_003400184.1| - 1.6e-10 39.6 0.0 1.8e-08 32.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.13 gi|284161561|ref|YP_003400184.1| - 2.3e-10 39.7 0.6 1.1e-06 27.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) DALR_2 PF09190.6 gi|284161561|ref|YP_003400184.1| - 4.4e-09 36.4 1.6 8.1e-09 35.6 0.1 2.2 2 0 0 2 2 2 1 DALR domain tRNA-synt_1d PF00750.14 gi|284161561|ref|YP_003400184.1| - 0.00076 18.4 0.0 0.051 12.3 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1c PF00749.16 gi|284161561|ref|YP_003400184.1| - 0.017 13.7 0.7 0.15 10.7 0.0 2.5 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain DUF3940 PF13076.1 gi|284161561|ref|YP_003400184.1| - 0.37 10.3 3.9 6 6.5 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF3940) tRNA_m1G_MT PF01746.16 gi|284161562|ref|YP_003400185.1| - 3.1e-17 62.7 0.4 2.7e-12 46.6 0.0 2.2 2 0 0 2 2 2 2 tRNA (Guanine-1)-methyltransferase DUF2993 PF11209.3 gi|284161562|ref|YP_003400185.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2993) UPF0146 PF03686.8 gi|284161563|ref|YP_003400186.1| - 3.8e-37 126.9 0.1 4.3e-37 126.7 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_23 PF13489.1 gi|284161563|ref|YP_003400186.1| - 0.0065 16.2 0.0 0.0082 15.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Acetyltransf_1 PF00583.19 gi|284161564|ref|YP_003400187.1| - 4.5e-23 81.0 0.0 6.3e-23 80.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284161564|ref|YP_003400187.1| - 5.1e-14 52.1 0.0 7.5e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284161564|ref|YP_003400187.1| - 1.1e-12 48.1 0.0 1.4e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284161564|ref|YP_003400187.1| - 1.2e-11 44.5 0.0 1.7e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|284161564|ref|YP_003400187.1| - 5.8e-11 41.9 0.0 8.4e-11 41.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|284161564|ref|YP_003400187.1| - 6.4e-11 42.4 0.0 8.5e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284161564|ref|YP_003400187.1| - 5.9e-09 35.9 0.0 9.3e-09 35.3 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284161564|ref|YP_003400187.1| - 4e-08 33.5 0.0 1.1e-07 32.0 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284161564|ref|YP_003400187.1| - 0.00016 21.4 0.0 0.00028 20.6 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|284161564|ref|YP_003400187.1| - 0.0065 16.0 0.0 0.0071 15.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF1762 PF08574.5 gi|284161564|ref|YP_003400187.1| - 0.056 13.8 0.1 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1762) PRC PF05239.11 gi|284161564|ref|YP_003400187.1| - 0.066 13.0 0.6 0.14 11.9 0.4 1.5 1 0 0 1 1 1 0 PRC-barrel domain Acetyltransf_6 PF13480.1 gi|284161564|ref|YP_003400187.1| - 0.067 13.1 0.0 0.095 12.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|284161564|ref|YP_003400187.1| - 0.078 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|284161564|ref|YP_003400187.1| - 0.12 11.7 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 UPF0058 PF01893.11 gi|284161565|ref|YP_003400188.1| - 3.1e-25 88.0 1.7 3.5e-25 87.8 1.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 PP2C PF00481.16 gi|284161565|ref|YP_003400188.1| - 0.14 11.4 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein phosphatase 2C HTH_Tnp_ISL3 PF13542.1 gi|284161566|ref|YP_003400189.1| - 2.9e-05 23.1 0.0 3.8e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 GntR PF00392.16 gi|284161566|ref|YP_003400189.1| - 0.00087 18.6 0.1 0.00098 18.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|284161566|ref|YP_003400189.1| - 0.002 17.7 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.6 gi|284161566|ref|YP_003400189.1| - 0.003 17.3 0.1 0.0031 17.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) CENP-B_N PF04218.8 gi|284161566|ref|YP_003400189.1| - 0.0032 16.8 0.0 0.0049 16.2 0.0 1.5 1 1 0 1 1 1 1 CENP-B N-terminal DNA-binding domain FeoC PF09012.5 gi|284161566|ref|YP_003400189.1| - 0.0058 16.3 0.0 0.0066 16.1 0.0 1.1 1 0 0 1 1 1 1 FeoC like transcriptional regulator TBPIP PF07106.8 gi|284161566|ref|YP_003400189.1| - 0.016 14.7 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_IclR PF09339.5 gi|284161566|ref|YP_003400189.1| - 0.02 14.4 0.0 0.027 14.0 0.0 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.7 gi|284161566|ref|YP_003400189.1| - 0.038 14.1 0.0 0.11 12.6 0.0 1.7 1 1 1 2 2 2 0 FaeA-like protein HTH_DeoR PF08220.7 gi|284161566|ref|YP_003400189.1| - 0.053 13.0 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|284161566|ref|YP_003400189.1| - 0.056 13.5 0.0 0.067 13.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.1 gi|284161566|ref|YP_003400189.1| - 0.057 13.4 0.1 0.098 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|284161566|ref|YP_003400189.1| - 0.064 12.9 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|284161566|ref|YP_003400189.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding EAP30 PF04157.11 gi|284161566|ref|YP_003400189.1| - 0.12 11.5 0.1 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_Crp_2 PF13545.1 gi|284161566|ref|YP_003400189.1| - 0.13 12.0 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GPP34 PF05719.6 gi|284161566|ref|YP_003400189.1| - 0.14 12.2 0.1 0.18 11.8 0.1 1.3 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) GntR PF00392.16 gi|284161567|ref|YP_003400190.1| - 1.5e-05 24.3 0.5 3.9e-05 23.0 0.4 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|284161567|ref|YP_003400190.1| - 3e-05 23.4 0.4 6.1e-05 22.4 0.2 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Ribosomal_S25 PF03297.10 gi|284161567|ref|YP_003400190.1| - 5.9e-05 23.0 0.2 0.0001 22.2 0.1 1.4 1 0 0 1 1 1 1 S25 ribosomal protein HTH_24 PF13412.1 gi|284161567|ref|YP_003400190.1| - 0.038 13.3 0.5 0.39 10.1 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|284161567|ref|YP_003400190.1| - 0.05 13.4 0.0 0.19 11.5 0.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|284161567|ref|YP_003400190.1| - 0.051 13.6 0.1 0.14 12.3 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|284161567|ref|YP_003400190.1| - 0.079 12.6 0.4 0.34 10.6 0.1 2.2 2 1 0 2 2 2 0 HTH domain AP-5_subunit_s1 PF15001.1 gi|284161567|ref|YP_003400190.1| - 0.081 12.8 0.5 0.11 12.4 0.3 1.2 1 0 0 1 1 1 0 AP-5 complex subunit sigma-1 TrmB PF01978.14 gi|284161567|ref|YP_003400190.1| - 0.13 11.9 0.2 0.34 10.6 0.2 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|284161567|ref|YP_003400190.1| - 0.14 12.5 0.0 0.38 11.1 0.1 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|284161568|ref|YP_003400191.1| - 6.3e-06 25.7 0.4 1.8e-05 24.2 0.2 1.8 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|284161568|ref|YP_003400191.1| - 0.00087 19.0 0.1 0.011 15.4 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284161568|ref|YP_003400191.1| - 0.058 12.7 0.3 0.18 11.2 0.2 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|284161569|ref|YP_003400192.1| - 1e-05 24.9 0.1 1.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|284161569|ref|YP_003400192.1| - 1.1e-05 25.2 2.2 3e-05 23.7 0.4 2.6 2 1 0 2 2 1 1 Helix-turn-helix domain of resolvase Trp_repressor PF01371.14 gi|284161569|ref|YP_003400192.1| - 2.6e-05 24.0 0.4 5.9e-05 22.9 0.2 1.8 1 1 0 1 1 1 1 Trp repressor protein Sigma70_r4_2 PF08281.7 gi|284161569|ref|YP_003400192.1| - 0.00026 20.3 1.5 0.00038 19.8 0.1 2.1 3 0 0 3 3 1 1 Sigma-70, region 4 V_ATPase_I PF01496.14 gi|284161569|ref|YP_003400192.1| - 0.00067 17.6 6.2 0.00075 17.5 4.3 1.0 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family HTH_38 PF13936.1 gi|284161569|ref|YP_003400192.1| - 0.0012 18.3 0.2 0.0035 16.8 0.1 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|284161569|ref|YP_003400192.1| - 0.0031 17.3 0.3 0.0066 16.2 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.1 gi|284161569|ref|YP_003400192.1| - 0.0036 17.2 0.1 0.0064 16.4 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain SNARE PF05739.14 gi|284161569|ref|YP_003400192.1| - 0.0055 16.3 4.4 0.18 11.4 0.2 2.3 2 0 0 2 2 2 1 SNARE domain MerR-DNA-bind PF09278.6 gi|284161569|ref|YP_003400192.1| - 0.014 15.7 1.5 0.027 14.8 0.8 1.8 1 1 0 1 1 1 0 MerR, DNA binding HTH_25 PF13413.1 gi|284161569|ref|YP_003400192.1| - 0.02 14.5 1.4 0.16 11.6 0.1 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain AAA_27 PF13514.1 gi|284161569|ref|YP_003400192.1| - 0.021 12.5 3.7 0.024 12.3 2.5 1.0 1 0 0 1 1 1 0 AAA domain DUF2802 PF10975.3 gi|284161569|ref|YP_003400192.1| - 0.025 14.3 2.2 0.66 9.7 0.0 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF2802) Sigma70_r4 PF04545.11 gi|284161569|ref|YP_003400192.1| - 0.028 13.7 0.0 0.069 12.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Tektin PF03148.9 gi|284161569|ref|YP_003400192.1| - 0.035 12.6 5.7 0.047 12.2 4.0 1.1 1 0 0 1 1 1 0 Tektin family Peptidase_S46 PF10459.4 gi|284161569|ref|YP_003400192.1| - 0.038 12.4 3.3 0.037 12.4 2.3 1.0 1 0 0 1 1 1 0 Peptidase S46 HNOB PF07700.10 gi|284161569|ref|YP_003400192.1| - 0.04 13.4 1.2 0.052 13.0 0.8 1.3 1 0 0 1 1 1 0 Heme NO binding CALCOCO1 PF07888.6 gi|284161569|ref|YP_003400192.1| - 0.045 12.0 4.4 0.043 12.1 3.1 1.0 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like HTH_24 PF13412.1 gi|284161569|ref|YP_003400192.1| - 0.052 12.9 0.1 0.052 12.9 0.1 2.2 2 0 0 2 2 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|284161569|ref|YP_003400192.1| - 0.052 12.8 0.1 0.18 11.1 0.0 1.9 1 1 1 2 2 2 0 Bacterial regulatory proteins, luxR family DUF4164 PF13747.1 gi|284161569|ref|YP_003400192.1| - 0.058 13.5 7.7 0.095 12.8 5.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) Spectrin PF00435.16 gi|284161569|ref|YP_003400192.1| - 0.075 13.3 4.1 0.1 12.8 2.9 1.3 1 0 0 1 1 1 0 Spectrin repeat DUF848 PF05852.6 gi|284161569|ref|YP_003400192.1| - 0.082 12.7 6.9 0.11 12.2 4.8 1.3 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) Reo_sigmaC PF04582.7 gi|284161569|ref|YP_003400192.1| - 0.084 12.0 0.0 0.1 11.7 0.0 1.0 1 0 0 1 1 1 0 Reovirus sigma C capsid protein FemAB PF02388.11 gi|284161569|ref|YP_003400192.1| - 0.11 11.1 4.4 0.12 10.9 3.0 1.2 1 0 0 1 1 1 0 FemAB family Kinetocho_Slk19 PF12709.2 gi|284161569|ref|YP_003400192.1| - 0.12 12.4 14.5 0.53 10.3 1.8 2.6 1 1 1 2 2 2 0 Central kinetochore-associated Syntaxin_2 PF14523.1 gi|284161569|ref|YP_003400192.1| - 0.13 12.3 10.4 0.056 13.4 5.5 1.7 2 0 0 2 2 1 0 Syntaxin-like protein APG6 PF04111.7 gi|284161569|ref|YP_003400192.1| - 0.13 11.2 7.1 0.16 11.0 4.9 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Spc7 PF08317.6 gi|284161569|ref|YP_003400192.1| - 0.15 10.6 11.1 0.18 10.4 7.7 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Snf7 PF03357.16 gi|284161569|ref|YP_003400192.1| - 0.16 11.3 13.5 0.42 9.9 0.5 2.8 1 1 2 3 3 3 0 Snf7 HTH_40 PF14493.1 gi|284161569|ref|YP_003400192.1| - 0.17 12.1 8.0 0.29 11.3 4.5 2.3 2 1 0 2 2 1 0 Helix-turn-helix domain DUF932 PF06067.6 gi|284161569|ref|YP_003400192.1| - 0.18 11.1 0.4 0.22 10.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF932) DUF342 PF03961.8 gi|284161569|ref|YP_003400192.1| - 0.23 9.8 11.1 0.28 9.5 7.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) AAA_23 PF13476.1 gi|284161569|ref|YP_003400192.1| - 0.24 11.7 11.1 0.29 11.4 7.7 1.4 1 0 0 1 1 1 0 AAA domain Med4 PF10018.4 gi|284161569|ref|YP_003400192.1| - 0.28 10.5 6.1 0.42 9.9 4.2 1.4 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 XhlA PF10779.4 gi|284161569|ref|YP_003400192.1| - 0.31 10.9 12.6 0.25 11.2 7.5 1.8 1 1 1 2 2 2 0 Haemolysin XhlA DUF4140 PF13600.1 gi|284161569|ref|YP_003400192.1| - 0.33 11.4 1.9 0.51 10.8 1.3 1.4 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Recombinase PF07508.8 gi|284161569|ref|YP_003400192.1| - 0.34 11.1 2.8 2.4 8.4 1.9 2.3 1 1 0 1 1 1 0 Recombinase Rep_fac_C PF08542.6 gi|284161569|ref|YP_003400192.1| - 0.38 10.7 3.5 0.86 9.6 0.3 2.7 1 1 1 2 2 2 0 Replication factor C C-terminal domain DUF724 PF05266.9 gi|284161569|ref|YP_003400192.1| - 0.48 10.0 10.4 0.72 9.4 7.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF724) PEPcase_2 PF14010.1 gi|284161569|ref|YP_003400192.1| - 0.49 8.6 4.7 0.58 8.3 3.3 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase Enkurin PF13864.1 gi|284161569|ref|YP_003400192.1| - 0.6 10.3 10.1 0.48 10.6 5.9 1.7 1 1 0 1 1 1 0 Calmodulin-binding Mgr1 PF08602.5 gi|284161569|ref|YP_003400192.1| - 0.62 9.0 4.6 0.68 8.8 3.2 1.1 1 0 0 1 1 1 0 Mgr1-like, i-AAA protease complex subunit CPSase_L_D3 PF02787.14 gi|284161569|ref|YP_003400192.1| - 0.76 9.5 4.9 0.5 10.1 0.1 2.3 1 1 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IncA PF04156.9 gi|284161569|ref|YP_003400192.1| - 1.1 8.7 11.0 2.3 7.7 7.6 1.6 1 1 0 1 1 1 0 IncA protein Paralemmin PF03285.10 gi|284161569|ref|YP_003400192.1| - 1.2 8.5 5.7 1.9 7.9 3.9 1.3 1 0 0 1 1 1 0 Paralemmin SseC PF04888.7 gi|284161569|ref|YP_003400192.1| - 1.4 8.2 8.2 1.1 8.5 5.0 1.4 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family DUF3373 PF11853.3 gi|284161569|ref|YP_003400192.1| - 1.9 6.9 4.3 2.1 6.7 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF4635 PF15466.1 gi|284161569|ref|YP_003400192.1| - 1.9 7.8 9.0 4.4 6.5 0.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) Cut12 PF11500.3 gi|284161569|ref|YP_003400192.1| - 3.8 7.1 9.6 8.6 6.0 6.6 1.7 1 1 0 1 1 1 0 Spindle pole body formation-associated protein MobC PF05713.6 gi|284161569|ref|YP_003400192.1| - 6.4 6.8 7.5 0.81 9.7 0.7 2.7 2 1 1 3 3 3 0 Bacterial mobilisation protein (MobC) MSA-2c PF12238.3 gi|284161569|ref|YP_003400192.1| - 9.7 5.7 9.5 5.4 6.6 5.1 1.5 1 1 1 2 2 2 0 Merozoite surface antigen 2c TF_Zn_Ribbon PF08271.7 gi|284161570|ref|YP_003400193.1| - 1.3e-05 24.4 0.6 3e-05 23.2 0.4 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|284161570|ref|YP_003400193.1| - 0.0021 18.0 0.8 0.0038 17.2 0.6 1.4 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.2 gi|284161570|ref|YP_003400193.1| - 0.042 13.6 0.3 0.089 12.6 0.2 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284161570|ref|YP_003400193.1| - 0.056 13.1 0.9 0.16 11.6 0.6 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RRN7 PF11781.3 gi|284161570|ref|YP_003400193.1| - 0.065 12.7 1.8 0.084 12.3 0.1 1.9 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2296 PF10058.4 gi|284161570|ref|YP_003400193.1| - 0.14 11.9 2.3 4.2 7.1 2.0 2.3 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) PhnA_Zn_Ribbon PF08274.7 gi|284161570|ref|YP_003400193.1| - 0.23 11.2 2.4 0.56 10.0 1.7 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon PHD PF00628.24 gi|284161570|ref|YP_003400193.1| - 0.27 10.9 2.5 0.85 9.3 1.8 1.8 1 1 0 1 1 1 0 PHD-finger DUF3725 PF12523.3 gi|284161570|ref|YP_003400193.1| - 0.28 11.2 2.5 1.7 8.7 0.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3725) zf-ribbon_3 PF13248.1 gi|284161570|ref|YP_003400193.1| - 0.63 9.3 4.5 3.3 7.0 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|284161570|ref|YP_003400193.1| - 1.1 9.0 4.2 0.64 9.7 0.2 2.3 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like DUF1610 PF07754.6 gi|284161570|ref|YP_003400193.1| - 5.5 7.2 7.4 8.5 6.5 1.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Mrr_cat PF04471.7 gi|284161572|ref|YP_003400195.1| - 0.06 13.1 0.2 0.19 11.5 0.0 1.8 2 0 0 2 2 2 0 Restriction endonuclease HTH_24 PF13412.1 gi|284161574|ref|YP_003400197.1| - 4.9e-09 35.4 0.1 6.7e-09 35.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284161574|ref|YP_003400197.1| - 2.3e-08 33.5 0.0 2.7e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284161574|ref|YP_003400197.1| - 2e-07 30.6 0.0 3.2e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|284161574|ref|YP_003400197.1| - 4.5e-07 30.0 0.0 5.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|284161574|ref|YP_003400197.1| - 7.6e-07 28.5 0.0 1.1e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|284161574|ref|YP_003400197.1| - 1.7e-06 28.1 0.0 1.8e-06 28.0 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn helix HTH_20 PF12840.2 gi|284161574|ref|YP_003400197.1| - 2e-06 27.5 0.0 2.4e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284161574|ref|YP_003400197.1| - 2.7e-06 26.9 0.1 4e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|284161574|ref|YP_003400197.1| - 6e-06 25.9 0.0 8e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|284161574|ref|YP_003400197.1| - 8.3e-06 25.6 0.0 1.1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284161574|ref|YP_003400197.1| - 1.3e-05 24.7 0.0 1.9e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|284161574|ref|YP_003400197.1| - 5.8e-05 22.9 0.0 0.00015 21.6 0.0 1.6 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|284161574|ref|YP_003400197.1| - 0.00024 20.8 0.0 0.0003 20.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix Crp PF00325.15 gi|284161574|ref|YP_003400197.1| - 0.00041 19.7 0.1 0.0054 16.1 0.0 2.4 3 0 0 3 3 3 1 Bacterial regulatory proteins, crp family Rrf2 PF02082.15 gi|284161574|ref|YP_003400197.1| - 0.00085 19.3 0.0 0.0012 18.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|284161574|ref|YP_003400197.1| - 0.00095 19.2 0.1 0.0018 18.3 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|284161574|ref|YP_003400197.1| - 0.0017 18.2 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HxlR PF01638.12 gi|284161574|ref|YP_003400197.1| - 0.002 17.6 0.0 0.0022 17.5 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|284161574|ref|YP_003400197.1| - 0.0022 17.5 0.0 0.0031 17.0 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|284161574|ref|YP_003400197.1| - 0.0023 17.3 0.0 0.0035 16.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_1 PF00126.22 gi|284161574|ref|YP_003400197.1| - 0.0025 17.5 0.0 0.0034 17.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_34 PF13601.1 gi|284161574|ref|YP_003400197.1| - 0.0026 17.7 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF3895 PF13034.1 gi|284161574|ref|YP_003400197.1| - 0.0071 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3895) HTH_11 PF08279.7 gi|284161574|ref|YP_003400197.1| - 0.0081 15.7 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain DUF4423 PF14394.1 gi|284161574|ref|YP_003400197.1| - 0.011 15.3 0.3 0.02 14.4 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) Sigma70_r4 PF04545.11 gi|284161574|ref|YP_003400197.1| - 0.013 14.7 0.0 0.038 13.3 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Phage_rep_org_N PF09681.5 gi|284161574|ref|YP_003400197.1| - 0.015 14.8 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) LexA_DNA_bind PF01726.11 gi|284161574|ref|YP_003400197.1| - 0.021 14.3 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain z-alpha PF02295.12 gi|284161574|ref|YP_003400197.1| - 0.027 14.2 0.1 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain TFIIE_alpha PF02002.12 gi|284161574|ref|YP_003400197.1| - 0.04 13.4 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit RPA_C PF08784.6 gi|284161574|ref|YP_003400197.1| - 0.043 14.2 0.0 0.082 13.3 0.0 1.5 2 0 0 2 2 1 0 Replication protein A C terminal Sigma70_r4_2 PF08281.7 gi|284161574|ref|YP_003400197.1| - 0.071 12.5 0.0 0.23 10.9 0.0 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 RepL PF05732.6 gi|284161574|ref|YP_003400197.1| - 0.11 11.7 0.0 0.16 11.1 0.0 1.4 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) UDG PF03167.14 gi|284161576|ref|YP_003400199.1| - 0.029 13.8 0.0 0.044 13.2 0.0 1.4 1 0 0 1 1 1 0 Uracil DNA glycosylase superfamily ACPS PF01648.15 gi|284161576|ref|YP_003400199.1| - 0.06 13.1 0.5 1.3 8.8 0.0 2.4 2 1 1 3 3 3 0 4'-phosphopantetheinyl transferase superfamily MMPL PF03176.10 gi|284161578|ref|YP_003400201.1| - 4e-48 163.8 28.1 1.8e-25 89.3 4.4 2.2 2 0 0 2 2 2 2 MMPL family Patched PF02460.13 gi|284161578|ref|YP_003400201.1| - 4.4e-14 51.3 36.3 2.4e-07 29.1 10.6 3.9 3 1 1 4 4 4 4 Patched family Sterol-sensing PF12349.3 gi|284161578|ref|YP_003400201.1| - 2e-09 37.0 19.4 2e-05 24.1 2.2 3.1 2 1 1 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation NPCBM_assoc PF10633.4 gi|284161579|ref|YP_003400202.1| - 1.9e-12 47.0 3.7 0.0087 16.0 0.0 5.0 5 0 0 5 5 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|284161579|ref|YP_003400202.1| - 6.8e-10 38.9 1.9 0.00028 20.9 0.0 4.9 5 0 0 5 5 5 3 CARDB Transglut_C PF00927.17 gi|284161579|ref|YP_003400202.1| - 0.0095 15.9 0.4 1.1 9.3 0.0 3.2 3 1 0 3 3 3 1 Transglutaminase family, C-terminal ig like domain Wzt_C PF14524.1 gi|284161579|ref|YP_003400202.1| - 0.029 14.0 0.1 13 5.4 0.0 3.1 2 1 1 3 3 3 0 Wzt C-terminal domain DUF11 PF01345.13 gi|284161579|ref|YP_003400202.1| - 0.033 14.2 0.9 12 5.9 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function DUF11 Y_Y_Y PF07495.8 gi|284161579|ref|YP_003400202.1| - 0.58 9.9 6.7 4.7 7.0 0.0 4.8 6 0 0 6 6 6 0 Y_Y_Y domain CBM_4_9 PF02018.12 gi|284161579|ref|YP_003400202.1| - 5 7.1 6.2 5.3 7.0 0.1 3.5 3 1 1 4 4 4 0 Carbohydrate binding domain TrmB PF01978.14 gi|284161580|ref|YP_003400203.1| - 4.3e-19 67.9 0.2 1.1e-18 66.6 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284161580|ref|YP_003400203.1| - 1.4e-05 24.6 0.0 3e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284161580|ref|YP_003400203.1| - 2e-05 24.0 0.1 0.0001 21.8 0.0 2.3 2 2 1 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284161580|ref|YP_003400203.1| - 7.5e-05 22.0 0.0 0.00018 20.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|284161580|ref|YP_003400203.1| - 0.00046 19.9 0.0 0.0046 16.7 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|284161580|ref|YP_003400203.1| - 0.00047 19.8 0.2 0.0025 17.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|284161580|ref|YP_003400203.1| - 0.00063 19.8 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|284161580|ref|YP_003400203.1| - 0.00084 19.4 0.0 0.002 18.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|284161580|ref|YP_003400203.1| - 0.00094 18.8 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|284161580|ref|YP_003400203.1| - 0.0018 17.7 0.1 0.0062 16.0 0.0 1.9 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_17 PF12728.2 gi|284161580|ref|YP_003400203.1| - 0.0032 17.6 0.1 0.028 14.6 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|284161580|ref|YP_003400203.1| - 0.0073 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0122 PF04297.9 gi|284161580|ref|YP_003400203.1| - 0.017 15.1 0.1 2.3 8.2 0.0 2.6 3 0 0 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_5 PF01022.15 gi|284161580|ref|YP_003400203.1| - 0.024 14.2 0.1 0.087 12.5 0.1 2.0 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|284161580|ref|YP_003400203.1| - 0.025 14.2 0.0 0.064 12.9 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_9 PF08221.6 gi|284161580|ref|YP_003400203.1| - 0.025 14.4 0.0 0.086 12.7 0.0 1.9 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_11 PF08279.7 gi|284161580|ref|YP_003400203.1| - 0.025 14.2 0.0 0.062 12.9 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_29 PF13551.1 gi|284161580|ref|YP_003400203.1| - 0.027 14.5 0.0 0.052 13.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix GntR PF00392.16 gi|284161580|ref|YP_003400203.1| - 0.045 13.2 0.0 0.097 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.6 gi|284161580|ref|YP_003400203.1| - 0.047 13.0 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain Penicillinase_R PF03965.11 gi|284161580|ref|YP_003400203.1| - 0.069 13.2 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor DUF910 PF06014.6 gi|284161580|ref|YP_003400203.1| - 0.085 12.7 1.1 0.38 10.7 0.0 2.5 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF910) QueC PF06508.8 gi|284161581|ref|YP_003400204.1| - 9.8e-63 211.2 0.0 1.1e-62 211.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|284161581|ref|YP_003400204.1| - 0.00043 19.8 0.0 0.0012 18.3 0.0 1.7 2 0 0 2 2 2 1 PP-loop family ThiI PF02568.9 gi|284161581|ref|YP_003400204.1| - 0.0037 16.7 0.0 0.027 13.9 0.0 2.0 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|284161581|ref|YP_003400204.1| - 0.0086 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase Arginosuc_synth PF00764.14 gi|284161581|ref|YP_003400204.1| - 0.027 13.4 0.1 0.1 11.6 0.0 1.9 2 1 1 3 3 3 0 Arginosuccinate synthase TatD_DNase PF01026.16 gi|284161582|ref|YP_003400205.1| - 3.5e-28 98.4 0.2 4.1e-28 98.2 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.19 gi|284161582|ref|YP_003400205.1| - 2e-05 23.9 0.1 4.8e-05 22.7 0.1 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Peptidase_M19 PF01244.16 gi|284161582|ref|YP_003400205.1| - 0.028 13.3 0.0 0.081 11.8 0.0 1.6 2 0 0 2 2 2 0 Membrane dipeptidase (Peptidase family M19) Hydrolase_3 PF08282.7 gi|284161582|ref|YP_003400205.1| - 0.053 13.0 0.0 0.69 9.4 0.0 2.3 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Chorismate_synt PF01264.16 gi|284161583|ref|YP_003400206.1| - 2.5e-151 503.0 0.0 2.9e-151 502.8 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase TruD PF01142.13 gi|284161584|ref|YP_003400207.1| - 2.2e-98 329.4 0.0 2.4e-98 329.2 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PAC2 PF09754.4 gi|284161586|ref|YP_003400209.1| - 2.1e-46 158.5 0.0 2.6e-46 158.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF473 PF04322.7 gi|284161587|ref|YP_003400210.1| - 1.1e-38 131.4 1.0 1.3e-38 131.2 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) OrfB_Zn_ribbon PF07282.6 gi|284161589|ref|YP_003400212.1| - 2.4e-23 81.5 0.0 5.1e-23 80.5 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|284161589|ref|YP_003400212.1| - 1.7e-09 37.4 9.3 1.7e-09 37.4 6.4 1.4 1 1 0 1 1 1 1 Probable transposase PNPase PF03726.9 gi|284161589|ref|YP_003400212.1| - 0.21 11.9 5.1 0.13 12.5 1.9 1.9 2 0 0 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain DMRL_synthase PF00885.14 gi|284161591|ref|YP_003400214.1| - 1.9e-18 66.5 0.0 2.2e-18 66.3 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase SpoU_sub_bind PF08032.7 gi|284161591|ref|YP_003400214.1| - 0.036 14.2 0.4 0.16 12.1 0.3 2.0 1 1 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding DUF3916 PF13079.1 gi|284161591|ref|YP_003400214.1| - 0.13 11.8 0.1 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3916) Aminotran_5 PF00266.14 gi|284161592|ref|YP_003400215.1| - 3.4e-37 128.0 0.0 4.5e-37 127.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|284161592|ref|YP_003400215.1| - 3.2e-05 23.0 0.0 5.5e-05 22.2 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|284161592|ref|YP_003400215.1| - 0.00042 19.5 0.0 0.00067 18.8 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_3 PF00202.16 gi|284161592|ref|YP_003400215.1| - 0.0007 18.5 0.0 0.12 11.1 0.0 2.3 2 0 0 2 2 2 2 Aminotransferase class-III FAD_binding_2 PF00890.19 gi|284161592|ref|YP_003400215.1| - 0.037 12.8 0.0 0.11 11.2 0.0 1.8 2 0 0 2 2 2 0 FAD binding domain Met_10 PF02475.11 gi|284161594|ref|YP_003400217.1| - 2.7e-75 252.3 1.3 3.8e-75 251.9 0.9 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|284161594|ref|YP_003400217.1| - 3.7e-12 46.3 0.0 6.4e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284161594|ref|YP_003400217.1| - 7.6e-10 39.3 0.0 1.3e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284161594|ref|YP_003400217.1| - 1.8e-09 37.3 0.0 6.1e-09 35.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|284161594|ref|YP_003400217.1| - 2.2e-08 33.6 0.0 4.2e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|284161594|ref|YP_003400217.1| - 1.4e-06 27.7 0.0 2.2e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|284161594|ref|YP_003400217.1| - 1.7e-06 27.3 0.0 9.4e-06 24.9 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|284161594|ref|YP_003400217.1| - 2.6e-05 24.5 0.0 5.5e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|284161594|ref|YP_003400217.1| - 4.3e-05 22.6 0.0 5.4e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|284161594|ref|YP_003400217.1| - 0.00016 21.3 0.0 0.00051 19.6 0.0 1.7 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|284161594|ref|YP_003400217.1| - 0.00042 19.9 0.0 0.00073 19.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|284161594|ref|YP_003400217.1| - 0.00042 19.9 0.0 0.00077 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.1 gi|284161594|ref|YP_003400217.1| - 0.00067 20.4 0.0 0.0013 19.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.21 gi|284161594|ref|YP_003400217.1| - 0.00082 18.9 0.1 0.056 12.9 0.0 3.2 3 1 0 3 3 3 1 Zinc-binding dehydrogenase Methyltransf_11 PF08241.7 gi|284161594|ref|YP_003400217.1| - 0.001 19.5 0.0 0.0025 18.2 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain PRMT5 PF05185.11 gi|284161594|ref|YP_003400217.1| - 0.0095 14.8 0.0 0.013 14.4 0.0 1.1 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Nol1_Nop2_Fmu PF01189.12 gi|284161594|ref|YP_003400217.1| - 0.022 14.1 0.0 0.1 11.9 0.0 2.0 2 1 0 2 2 2 0 NOL1/NOP2/sun family Pab87_oct PF13969.1 gi|284161594|ref|YP_003400217.1| - 0.03 14.4 0.4 0.078 13.0 0.3 1.7 1 0 0 1 1 1 0 Pab87 octamerisation domain Methyltransf_23 PF13489.1 gi|284161594|ref|YP_003400217.1| - 0.055 13.2 0.0 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|284161594|ref|YP_003400217.1| - 0.067 12.2 0.0 0.85 8.6 0.0 2.2 1 1 0 1 1 1 0 Putative methyltransferase RTC PF01137.16 gi|284161595|ref|YP_003400218.1| - 6e-84 280.3 0.0 1.1e-83 279.5 0.0 1.4 1 1 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|284161595|ref|YP_003400218.1| - 6.8e-23 80.6 0.1 1.4e-22 79.6 0.1 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain DUF2072 PF09845.4 gi|284161596|ref|YP_003400219.1| - 2.3e-31 108.4 5.8 3.8e-17 62.4 0.0 2.0 1 1 1 2 2 2 2 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|284161596|ref|YP_003400219.1| - 0.13 11.8 3.0 0.37 10.3 2.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF2073 PF09846.4 gi|284161597|ref|YP_003400220.1| - 5e-42 141.7 1.1 5.8e-42 141.5 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|284161598|ref|YP_003400221.1| - 2.5e-16 59.6 0.0 3.4e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|284161598|ref|YP_003400221.1| - 2.6e-14 53.0 0.1 1.3e-07 31.2 0.0 2.5 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|284161598|ref|YP_003400221.1| - 6.8e-06 25.4 0.0 0.019 14.2 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family Miro PF08477.8 gi|284161598|ref|YP_003400221.1| - 3.5e-05 24.2 0.0 0.00037 20.9 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|284161598|ref|YP_003400221.1| - 0.00034 19.9 0.0 0.25 10.5 0.0 2.4 1 1 1 2 2 2 2 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|284161598|ref|YP_003400221.1| - 0.00039 19.7 0.1 0.002 17.3 0.1 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|284161598|ref|YP_003400221.1| - 0.00042 21.1 0.2 0.001 19.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284161598|ref|YP_003400221.1| - 0.0017 18.5 0.0 0.0042 17.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Septin PF00735.13 gi|284161598|ref|YP_003400221.1| - 0.0028 16.7 0.0 0.0038 16.2 0.0 1.2 1 0 0 1 1 1 1 Septin AAA_18 PF13238.1 gi|284161598|ref|YP_003400221.1| - 0.0052 17.0 0.1 0.012 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|284161598|ref|YP_003400221.1| - 0.011 15.9 0.0 0.022 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain Ras PF00071.17 gi|284161598|ref|YP_003400221.1| - 0.018 14.4 0.0 4.9 6.5 0.0 2.6 2 1 0 2 2 2 0 Ras family Arch_ATPase PF01637.13 gi|284161598|ref|YP_003400221.1| - 0.026 14.2 0.0 0.039 13.6 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase MMR_HSR1_C PF08438.5 gi|284161598|ref|YP_003400221.1| - 0.028 14.6 0.0 0.053 13.7 0.0 1.4 1 0 0 1 1 1 0 GTPase of unknown function C-terminal AAA_24 PF13479.1 gi|284161598|ref|YP_003400221.1| - 0.029 13.9 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|284161598|ref|YP_003400221.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|284161598|ref|YP_003400221.1| - 0.12 11.8 0.0 0.26 10.6 0.0 1.6 1 1 1 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|284161598|ref|YP_003400221.1| - 0.13 11.6 0.0 0.41 10.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|284161598|ref|YP_003400221.1| - 0.16 10.8 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Fer4 PF00037.22 gi|284161599|ref|YP_003400222.1| - 8.1e-20 69.5 19.9 1.1e-10 40.6 4.4 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284161599|ref|YP_003400222.1| - 4e-17 61.2 19.5 2.7e-09 36.4 3.3 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284161599|ref|YP_003400222.1| - 5.2e-14 51.7 23.9 1.6e-10 40.6 9.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284161599|ref|YP_003400222.1| - 1.8e-12 47.4 12.7 2.6e-12 46.9 8.8 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161599|ref|YP_003400222.1| - 3.5e-11 43.6 10.1 5.3e-06 27.0 0.8 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|284161599|ref|YP_003400222.1| - 4.9e-11 41.8 17.8 7.6e-06 25.5 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284161599|ref|YP_003400222.1| - 1.4e-10 41.3 12.0 2.3e-10 40.5 8.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284161599|ref|YP_003400222.1| - 3.3e-09 36.3 15.9 0.00017 21.6 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|284161599|ref|YP_003400222.1| - 2.5e-08 33.8 19.8 0.00041 20.7 4.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284161599|ref|YP_003400222.1| - 1.3e-07 31.3 14.4 5.4e-07 29.3 10.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284161599|ref|YP_003400222.1| - 7e-07 29.7 18.3 5.9e-05 23.5 2.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|284161599|ref|YP_003400222.1| - 5.8e-05 23.3 10.6 0.013 15.8 1.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284161599|ref|YP_003400222.1| - 5.9e-05 23.0 12.7 0.0027 17.7 8.8 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|284161599|ref|YP_003400222.1| - 0.00074 19.3 3.7 0.005 16.7 2.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284161599|ref|YP_003400222.1| - 0.0032 17.8 18.2 0.13 12.7 3.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284161599|ref|YP_003400222.1| - 0.021 15.2 20.9 0.27 11.6 4.0 2.5 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|284161599|ref|YP_003400222.1| - 1 9.2 9.5 4.1 7.3 1.3 3.0 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster Adenylsucc_synt PF00709.16 gi|284161600|ref|YP_003400223.1| - 1.7e-90 303.7 1.5 4.5e-41 140.8 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Csm1 PF12539.3 gi|284161601|ref|YP_003400224.1| - 0.023 15.1 0.3 6.2 7.3 0.0 2.3 2 0 0 2 2 2 0 Chromosome segregation protein Csm1/Pcs1 Ribosomal_L29 PF00831.18 gi|284161601|ref|YP_003400224.1| - 0.064 12.9 5.2 0.32 10.6 1.4 2.9 2 0 0 2 2 2 0 Ribosomal L29 protein ARD PF03079.9 gi|284161601|ref|YP_003400224.1| - 0.079 12.8 0.5 0.15 12.0 0.4 1.5 1 0 0 1 1 1 0 ARD/ARD' family Nol1_Nop2_Fmu PF01189.12 gi|284161602|ref|YP_003400225.1| - 7.5e-66 222.3 0.0 8.6e-66 222.1 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|284161602|ref|YP_003400225.1| - 3e-07 30.1 0.1 7.5e-07 28.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284161602|ref|YP_003400225.1| - 1.2e-06 28.5 0.0 2.6e-06 27.4 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|284161602|ref|YP_003400225.1| - 3.5e-05 23.8 0.0 4.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.12 gi|284161602|ref|YP_003400225.1| - 9.6e-05 21.5 0.3 0.016 14.2 0.1 2.8 3 0 0 3 3 3 1 Putative methyltransferase Methyltransf_18 PF12847.2 gi|284161602|ref|YP_003400225.1| - 0.0039 17.7 0.0 0.0073 16.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284161602|ref|YP_003400225.1| - 0.032 13.6 0.0 0.065 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain POR PF01558.13 gi|284161602|ref|YP_003400225.1| - 0.087 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase Radical_SAM PF04055.16 gi|284161603|ref|YP_003400226.1| - 2.2e-21 76.7 0.1 4.6e-20 72.4 0.0 2.8 2 1 1 3 3 3 1 Radical SAM superfamily IF2_N PF04760.10 gi|284161603|ref|YP_003400226.1| - 0.011 15.3 0.2 0.058 13.0 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region NTP_transf_2 PF01909.18 gi|284161603|ref|YP_003400226.1| - 0.11 12.8 3.4 0.95 9.8 0.0 3.5 2 2 0 2 2 2 0 Nucleotidyltransferase domain LEA_2 PF03168.8 gi|284161604|ref|YP_003400227.1| - 4.7e-18 65.4 0.1 7.3e-10 39.1 0.0 2.2 2 0 0 2 2 2 2 Late embryogenesis abundant protein DUF1356 PF07092.7 gi|284161604|ref|YP_003400227.1| - 0.0008 18.6 0.9 0.026 13.7 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1356) YukC PF10140.4 gi|284161604|ref|YP_003400227.1| - 0.0045 15.6 0.0 0.0082 14.7 0.0 1.3 1 0 0 1 1 1 1 WXG100 protein secretion system (Wss), protein YukC DUF4540 PF15073.1 gi|284161604|ref|YP_003400227.1| - 0.1 13.1 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4540) DUF123 PF01986.11 gi|284161605|ref|YP_003400228.1| - 1.2e-27 95.8 0.1 1.5e-27 95.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 eRF1_2 PF03464.10 gi|284161606|ref|YP_003400229.1| - 1.2e-41 142.1 0.0 2.1e-41 141.3 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|284161606|ref|YP_003400229.1| - 4.2e-35 120.4 2.6 2.5e-34 117.9 1.3 2.6 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|284161606|ref|YP_003400229.1| - 5.8e-22 77.6 0.1 2.8e-21 75.4 0.0 2.1 2 1 1 3 3 3 1 eRF1 domain 1 DUF1610 PF07754.6 gi|284161606|ref|YP_003400229.1| - 0.018 15.1 0.5 0.043 13.9 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|284161606|ref|YP_003400229.1| - 0.028 14.3 9.9 0.037 13.9 2.9 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-CSL PF05207.8 gi|284161606|ref|YP_003400229.1| - 0.045 13.2 0.7 0.11 12.0 0.5 1.6 1 0 0 1 1 1 0 CSL zinc finger Desulfoferrod_N PF06397.7 gi|284161606|ref|YP_003400229.1| - 0.078 12.3 3.8 0.18 11.2 2.6 1.6 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_2 PF13240.1 gi|284161606|ref|YP_003400229.1| - 0.082 12.4 0.7 0.15 11.5 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284161606|ref|YP_003400229.1| - 0.11 11.8 5.0 0.26 10.6 3.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|284161606|ref|YP_003400229.1| - 0.16 11.6 2.1 0.51 10.0 1.4 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.1 gi|284161606|ref|YP_003400229.1| - 0.19 10.9 1.9 5.7 6.2 0.1 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger Prenyltransf PF01255.14 gi|284161607|ref|YP_003400230.1| - 1.5e-79 266.2 0.3 1.8e-79 266.0 0.2 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase RNA_pol_Rpb1_6 PF04992.9 gi|284161607|ref|YP_003400230.1| - 0.037 13.7 0.3 0.047 13.4 0.2 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 6 DUF2551 PF10826.3 gi|284161608|ref|YP_003400231.1| - 1.9e-27 94.9 1.1 2.2e-27 94.7 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Arg_repressor PF01316.16 gi|284161608|ref|YP_003400231.1| - 0.0001 21.7 0.1 0.00018 20.9 0.0 1.4 1 1 0 1 1 1 1 Arginine repressor, DNA binding domain DUF3874 PF12990.2 gi|284161608|ref|YP_003400231.1| - 0.00025 21.0 0.1 0.00033 20.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknonw function from B. Theta Gene description (DUF3874) FUR PF01475.14 gi|284161608|ref|YP_003400231.1| - 0.024 14.5 0.1 0.031 14.1 0.1 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Penicillinase_R PF03965.11 gi|284161608|ref|YP_003400231.1| - 0.041 13.9 0.0 0.052 13.6 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor RNA_pol_Rpb1_4 PF05000.12 gi|284161608|ref|YP_003400231.1| - 0.063 13.0 0.0 0.067 12.9 0.0 1.4 1 1 0 1 1 1 0 RNA polymerase Rpb1, domain 4 Fer4_12 PF13353.1 gi|284161609|ref|YP_003400232.1| - 3.9e-10 39.9 0.0 9.3e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|284161609|ref|YP_003400232.1| - 7.6e-09 35.9 0.4 2.8e-08 34.1 0.2 2.2 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|284161609|ref|YP_003400232.1| - 1e-07 31.9 0.1 7.3e-07 29.2 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain ATE_N PF04376.8 gi|284161609|ref|YP_003400232.1| - 0.055 13.2 0.0 4.4 7.1 0.0 3.1 3 0 0 3 3 3 0 Arginine-tRNA-protein transferase, N terminus Pkip-1 PF06878.6 gi|284161609|ref|YP_003400232.1| - 0.066 13.0 0.3 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 Pkip-1 protein zf-P11 PF03854.9 gi|284161609|ref|YP_003400232.1| - 2.9 7.4 5.9 1.8 8.1 0.1 2.3 2 0 0 2 2 2 0 P-11 zinc finger Ribosomal_L7Ae PF01248.21 gi|284161610|ref|YP_003400233.1| - 5.4e-30 102.7 0.9 6.2e-30 102.5 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.6 gi|284161610|ref|YP_003400233.1| - 0.00068 19.5 0.0 0.00081 19.2 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit Pop3 PELOTA_1 PF15608.1 gi|284161610|ref|YP_003400233.1| - 0.0021 17.7 0.0 0.0028 17.4 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain Ribosomal_S28e PF01200.13 gi|284161611|ref|YP_003400234.1| - 7.9e-32 108.8 1.4 8.5e-32 108.7 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|284161611|ref|YP_003400234.1| - 0.03 14.0 0.1 0.18 11.5 0.0 2.3 2 0 0 2 2 2 0 KOW motif Ribosomal_L24e PF01246.15 gi|284161612|ref|YP_003400235.1| - 1.3e-26 92.2 1.1 1.3e-26 92.2 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|284161612|ref|YP_003400235.1| - 3e-05 23.5 1.3 4.6e-05 22.9 0.9 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|284161612|ref|YP_003400235.1| - 0.0017 18.4 1.5 0.0028 17.7 0.8 1.6 1 1 0 1 1 1 1 Archaeal TRASH domain YHS PF04945.8 gi|284161612|ref|YP_003400235.1| - 0.002 17.9 0.6 0.0028 17.4 0.4 1.2 1 0 0 1 1 1 1 YHS domain DUF164 PF02591.10 gi|284161612|ref|YP_003400235.1| - 0.07 12.9 0.4 0.09 12.6 0.3 1.2 1 0 0 1 1 1 0 Putative zinc ribbon domain PD40 PF07676.7 gi|284161612|ref|YP_003400235.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 WD40-like Beta Propeller Repeat RNA_POL_M_15KD PF02150.11 gi|284161612|ref|YP_003400235.1| - 0.14 11.8 2.3 4.1 7.1 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2116 PF09889.4 gi|284161612|ref|YP_003400235.1| - 0.15 11.8 1.8 1.7 8.4 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-C4_ClpX PF06689.8 gi|284161612|ref|YP_003400235.1| - 0.22 11.0 2.7 0.39 10.2 1.9 1.6 1 1 0 1 1 1 0 ClpX C4-type zinc finger A2L_zn_ribbon PF08792.5 gi|284161612|ref|YP_003400235.1| - 0.32 10.4 3.9 3.6 7.1 0.2 2.5 2 1 1 3 3 3 0 A2L zinc ribbon domain DUF77 PF01910.12 gi|284161613|ref|YP_003400236.1| - 1.1e-22 79.4 0.3 1.2e-22 79.3 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Glutaredoxin PF00462.19 gi|284161613|ref|YP_003400236.1| - 0.071 13.1 0.1 0.31 11.0 0.0 2.0 1 1 1 2 2 2 0 Glutaredoxin ParcG PF10274.4 gi|284161613|ref|YP_003400236.1| - 0.077 12.9 0.0 0.13 12.1 0.0 1.5 1 1 1 2 2 2 0 Parkin co-regulated protein NDK PF00334.14 gi|284161614|ref|YP_003400237.1| - 2.1e-63 212.1 0.0 2.3e-63 211.9 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.22 gi|284161615|ref|YP_003400238.1| - 8.5e-30 103.5 0.0 7.8e-26 90.6 0.0 2.5 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|284161615|ref|YP_003400238.1| - 1.6e-22 79.4 3.5 1.7e-22 79.3 1.1 2.1 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|284161615|ref|YP_003400238.1| - 2.8e-15 55.7 1.6 2.8e-15 55.7 1.1 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 4 LAGLIDADG_3 PF14528.1 gi|284161615|ref|YP_003400238.1| - 4.5e-15 55.6 0.9 4.5e-15 55.6 0.6 3.5 3 0 0 3 3 3 1 LAGLIDADG-like domain GTP_EFTU_D2 PF03144.20 gi|284161615|ref|YP_003400238.1| - 1.2e-11 44.5 7.9 1.8e-09 37.5 0.4 3.1 2 0 0 2 2 2 2 Elongation factor Tu domain 2 Intein_splicing PF14890.1 gi|284161615|ref|YP_003400238.1| - 8.7e-07 28.1 14.1 0.00018 20.4 0.5 3.1 3 1 1 4 4 4 2 Intein splicing domain MMR_HSR1 PF01926.18 gi|284161615|ref|YP_003400238.1| - 0.0067 16.3 0.1 0.025 14.5 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase LAGLIDADG_WhiA PF14527.1 gi|284161615|ref|YP_003400238.1| - 0.018 14.9 0.6 3.2 7.6 0.0 3.1 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain ATP_bind_1 PF03029.12 gi|284161615|ref|YP_003400238.1| - 0.026 14.0 0.0 0.066 12.7 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC_cobalt PF09819.4 gi|284161616|ref|YP_003400239.1| - 0.32 10.9 11.3 0.38 10.6 7.8 1.0 1 0 0 1 1 1 0 ABC-type cobalt transport system, permease component ATP_synt_I PF03899.10 gi|284161616|ref|YP_003400239.1| - 0.43 10.7 10.4 0.13 12.3 3.3 2.1 2 0 0 2 2 2 0 ATP synthase I chain DUF4203 PF13886.1 gi|284161616|ref|YP_003400239.1| - 0.92 8.9 14.6 0.33 10.3 4.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) Gly-zipper_Omp PF13488.1 gi|284161616|ref|YP_003400239.1| - 0.92 9.1 4.8 6.5 6.4 0.2 2.3 2 0 0 2 2 2 0 Glycine zipper DUF1282 PF06930.7 gi|284161616|ref|YP_003400239.1| - 1.3 8.6 9.2 1.8 8.1 6.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) Vma12 PF11712.3 gi|284161616|ref|YP_003400239.1| - 1.6 8.3 4.7 2.3 7.9 3.2 1.4 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Gly-zipper_YMGG PF13441.1 gi|284161616|ref|YP_003400239.1| - 2.6 7.6 5.2 4.9 6.7 0.2 2.3 2 0 0 2 2 2 0 YMGG-like Gly-zipper DUF3169 PF11368.3 gi|284161616|ref|YP_003400239.1| - 3 6.9 16.1 0.78 8.8 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3169) DUF4149 PF13664.1 gi|284161616|ref|YP_003400239.1| - 3.5 7.7 9.0 6.2 6.9 6.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) Phage_holin_1 PF04531.8 gi|284161616|ref|YP_003400239.1| - 4.4 7.4 9.4 1.3 9.1 0.5 2.2 1 1 1 2 2 2 0 Bacteriophage holin CAAD PF14159.1 gi|284161616|ref|YP_003400239.1| - 6.4 6.4 10.3 7.2 6.3 6.3 1.8 1 1 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase SNARE_assoc PF09335.6 gi|284161616|ref|YP_003400239.1| - 7.5 6.7 9.0 6.3 7.0 2.0 2.1 2 0 0 2 2 2 0 SNARE associated Golgi protein Aminotran_1_2 PF00155.16 gi|284161617|ref|YP_003400240.1| - 4.1e-63 213.5 0.0 4.7e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|284161617|ref|YP_003400240.1| - 0.0044 15.7 0.1 0.007 15.0 0.0 1.4 1 1 0 1 1 1 1 Allinase DUF3650 PF12368.3 gi|284161617|ref|YP_003400240.1| - 0.12 11.8 0.0 0.36 10.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3650) AsnC_trans_reg PF01037.16 gi|284161618|ref|YP_003400241.1| - 1.7e-17 62.8 0.9 2.1e-17 62.5 0.2 1.5 2 0 0 2 2 1 1 AsnC family HTH_24 PF13412.1 gi|284161618|ref|YP_003400241.1| - 1.7e-14 52.9 0.4 3.2e-14 52.0 0.1 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284161618|ref|YP_003400241.1| - 1.3e-09 37.4 0.1 5.4e-09 35.4 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|284161618|ref|YP_003400241.1| - 9.6e-07 28.3 0.0 1.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284161618|ref|YP_003400241.1| - 1.1e-06 28.2 0.6 2.2e-06 27.2 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|284161618|ref|YP_003400241.1| - 6.8e-06 25.5 0.0 4e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|284161618|ref|YP_003400241.1| - 6.2e-05 22.7 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|284161618|ref|YP_003400241.1| - 6.4e-05 23.0 0.0 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Crp PF00325.15 gi|284161618|ref|YP_003400241.1| - 0.00023 20.5 0.0 0.00057 19.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_28 PF13518.1 gi|284161618|ref|YP_003400241.1| - 0.00066 19.6 0.0 0.0026 17.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|284161618|ref|YP_003400241.1| - 0.0028 17.4 0.0 0.0047 16.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284161618|ref|YP_003400241.1| - 0.0028 17.2 0.1 0.0051 16.4 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|284161618|ref|YP_003400241.1| - 0.003 17.0 1.4 0.0048 16.3 1.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.7 gi|284161618|ref|YP_003400241.1| - 0.0049 16.4 0.2 0.0082 15.7 0.1 1.4 1 0 0 1 1 1 1 HTH domain DUF1670 PF07900.6 gi|284161618|ref|YP_003400241.1| - 0.0062 15.7 0.1 0.0084 15.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_27 PF13463.1 gi|284161618|ref|YP_003400241.1| - 0.0067 16.7 0.1 0.095 13.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|284161618|ref|YP_003400241.1| - 0.0074 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|284161618|ref|YP_003400241.1| - 0.0089 15.1 0.0 0.053 12.6 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_34 PF13601.1 gi|284161618|ref|YP_003400241.1| - 0.019 14.9 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|284161618|ref|YP_003400241.1| - 0.02 14.1 0.1 0.16 11.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2250 PF10007.4 gi|284161618|ref|YP_003400241.1| - 0.021 14.7 0.2 0.039 13.8 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|284161618|ref|YP_003400241.1| - 0.023 14.8 0.1 0.074 13.1 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator Sigma70_r3 PF04539.11 gi|284161618|ref|YP_003400241.1| - 0.024 14.5 0.3 0.052 13.4 0.2 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_5 PF01022.15 gi|284161618|ref|YP_003400241.1| - 0.024 14.2 0.1 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|284161618|ref|YP_003400241.1| - 0.036 13.5 0.0 1.7 8.1 0.0 2.7 3 0 0 3 3 2 0 Sigma-70, region 4 HTH_Mga PF08280.6 gi|284161618|ref|YP_003400241.1| - 0.041 13.6 0.1 0.13 12.0 0.0 1.8 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain HHH_5 PF14520.1 gi|284161618|ref|YP_003400241.1| - 0.046 13.8 2.4 0.35 11.0 0.2 2.8 2 1 0 2 2 2 0 Helix-hairpin-helix domain DUF2711 PF10924.3 gi|284161618|ref|YP_003400241.1| - 0.05 13.0 0.5 0.095 12.1 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2711) HTH_17 PF12728.2 gi|284161618|ref|YP_003400241.1| - 0.054 13.7 0.0 0.12 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_32 PF13565.1 gi|284161618|ref|YP_003400241.1| - 0.064 14.0 0.6 2.1 9.2 0.1 2.9 2 1 1 3 3 2 0 Homeodomain-like domain DUF440 PF04269.7 gi|284161618|ref|YP_003400241.1| - 0.066 13.2 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF440 NUDIX_4 PF14815.1 gi|284161618|ref|YP_003400241.1| - 0.087 12.2 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 NUDIX domain Phage_CII PF05269.6 gi|284161618|ref|YP_003400241.1| - 0.089 12.8 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Bacteriophage CII protein DUF4447 PF14590.1 gi|284161618|ref|YP_003400241.1| - 0.2 11.2 0.9 4.8 6.7 0.1 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4447) GatB_N PF02934.10 gi|284161619|ref|YP_003400242.1| - 4.4e-115 383.4 0.0 6.4e-115 382.9 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|284161619|ref|YP_003400242.1| - 1.1e-43 148.4 0.0 2e-43 147.6 0.0 1.4 1 0 0 1 1 1 1 GatB domain Cation_efflux PF01545.16 gi|284161620|ref|YP_003400243.1| - 9.2e-57 192.2 5.4 1e-56 192.1 3.8 1.0 1 0 0 1 1 1 1 Cation efflux family Yip1 PF04893.12 gi|284161620|ref|YP_003400243.1| - 2.6 7.5 8.6 0.11 11.9 0.6 2.2 1 1 1 2 2 2 0 Yip1 domain DUF21 PF01595.15 gi|284161620|ref|YP_003400243.1| - 4.9 6.4 8.6 8 5.7 0.3 2.5 2 1 1 3 3 3 0 Domain of unknown function DUF21 Rep_fac_C PF08542.6 gi|284161621|ref|YP_003400244.1| - 9e-23 80.0 1.3 1.5e-22 79.3 0.1 2.1 2 0 0 2 2 2 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|284161621|ref|YP_003400244.1| - 1.5e-17 63.7 0.1 1e-10 41.4 0.0 2.6 2 1 0 2 2 2 2 DNA polymerase III, delta subunit AAA PF00004.24 gi|284161621|ref|YP_003400244.1| - 8.4e-14 51.9 0.1 5.8e-06 26.5 0.0 3.4 3 1 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|284161621|ref|YP_003400244.1| - 3.9e-12 45.6 0.1 3.2e-05 22.8 0.0 2.8 3 0 0 3 3 3 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|284161621|ref|YP_003400244.1| - 9e-07 28.1 0.1 4.4e-06 25.9 0.0 2.1 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus DNA_pol3_delta PF06144.8 gi|284161621|ref|YP_003400244.1| - 9.5e-07 28.4 0.2 8.1e-06 25.4 0.0 2.5 3 0 0 3 3 3 1 DNA polymerase III, delta subunit TIP49 PF06068.8 gi|284161621|ref|YP_003400244.1| - 1.4e-06 27.2 0.0 0.00069 18.4 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus LAGLIDADG_3 PF14528.1 gi|284161621|ref|YP_003400244.1| - 2.4e-06 27.6 1.6 3.5e-05 23.9 0.2 3.0 2 1 0 2 2 2 1 LAGLIDADG-like domain AAA_16 PF13191.1 gi|284161621|ref|YP_003400244.1| - 3.3e-06 27.1 0.0 0.0057 16.6 0.0 3.4 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|284161621|ref|YP_003400244.1| - 1.3e-05 25.3 0.0 0.35 11.0 0.0 3.2 3 1 0 3 3 3 2 AAA domain ResIII PF04851.10 gi|284161621|ref|YP_003400244.1| - 0.0002 21.2 0.0 0.00054 19.8 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Hom_end PF05204.9 gi|284161621|ref|YP_003400244.1| - 0.00027 20.8 0.0 0.0078 16.1 0.0 2.5 2 0 0 2 2 2 1 Homing endonuclease AAA_19 PF13245.1 gi|284161621|ref|YP_003400244.1| - 0.00062 19.4 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|284161621|ref|YP_003400244.1| - 0.0017 17.7 0.0 0.0071 15.7 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|284161621|ref|YP_003400244.1| - 0.0021 17.2 0.0 0.075 12.1 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|284161621|ref|YP_003400244.1| - 0.0025 18.1 1.9 0.0078 16.5 0.0 3.0 4 0 0 4 4 2 1 AAA domain AAA_5 PF07728.9 gi|284161621|ref|YP_003400244.1| - 0.0043 16.7 0.0 0.57 9.9 0.0 3.2 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|284161621|ref|YP_003400244.1| - 0.007 15.8 0.0 0.69 9.3 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain SNF2_N PF00176.18 gi|284161621|ref|YP_003400244.1| - 0.01 14.6 0.0 2.1 7.0 0.0 2.7 2 1 1 3 3 3 0 SNF2 family N-terminal domain Zeta_toxin PF06414.7 gi|284161621|ref|YP_003400244.1| - 0.014 14.5 0.0 0.032 13.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.1 gi|284161621|ref|YP_003400244.1| - 0.016 14.7 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284161621|ref|YP_003400244.1| - 0.041 14.6 1.3 0.36 11.6 0.0 3.0 2 2 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|284161621|ref|YP_003400244.1| - 0.045 12.9 0.0 0.21 10.7 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein FtsK_SpoIIIE PF01580.13 gi|284161621|ref|YP_003400244.1| - 0.082 12.3 0.0 0.63 9.4 0.0 2.3 2 1 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|284161621|ref|YP_003400244.1| - 0.11 11.8 0.0 0.38 10.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain TPR_14 PF13428.1 gi|284161621|ref|YP_003400244.1| - 0.62 10.8 4.0 0.78 10.5 0.2 2.9 2 1 1 3 3 2 0 Tetratricopeptide repeat RHH_1 PF01402.16 gi|284161621|ref|YP_003400244.1| - 0.86 9.6 6.2 12 6.0 0.1 4.1 4 0 0 4 4 4 0 Ribbon-helix-helix protein, copG family OrfB_Zn_ribbon PF07282.6 gi|284161623|ref|YP_003400246.1| - 7.6e-24 83.1 0.4 1.9e-23 81.8 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|284161623|ref|YP_003400246.1| - 1e-07 31.5 3.7 1e-07 31.5 2.5 1.7 2 0 0 2 2 2 1 Probable transposase Baculo_ME53 PF06061.6 gi|284161623|ref|YP_003400246.1| - 0.0043 16.0 0.8 0.0075 15.2 0.1 1.7 2 0 0 2 2 2 1 Baculoviridae ME53 TF_Zn_Ribbon PF08271.7 gi|284161623|ref|YP_003400246.1| - 0.057 12.7 1.5 0.17 11.2 1.0 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding DUF2458 PF10454.4 gi|284161623|ref|YP_003400246.1| - 1.9 8.3 5.0 0.45 10.4 0.2 2.5 2 2 0 2 2 2 0 Protein of unknown function (DUF2458) RNase_P_Rpp14 PF01900.14 gi|284161624|ref|YP_003400247.1| - 3.6e-17 62.1 0.0 4.7e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|284161625|ref|YP_003400248.1| - 3.6e-64 215.5 0.1 4.6e-64 215.2 0.1 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|284161625|ref|YP_003400248.1| - 6.2e-15 54.1 0.1 1.2e-14 53.3 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature NTNH_C PF08470.5 gi|284161625|ref|YP_003400248.1| - 0.041 13.5 0.2 0.064 12.8 0.1 1.3 1 0 0 1 1 1 0 Nontoxic nonhaemagglutinin C-terminal DUF555 PF04475.7 gi|284161625|ref|YP_003400248.1| - 0.074 13.0 0.2 0.2 11.6 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF555) SBDS PF01172.13 gi|284161626|ref|YP_003400249.1| - 7.2e-27 93.0 1.2 1.3e-26 92.1 0.8 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|284161626|ref|YP_003400249.1| - 9.3e-23 80.2 0.0 1.5e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain K1377 PF15352.1 gi|284161626|ref|YP_003400249.1| - 0.15 9.9 0.4 0.19 9.6 0.3 1.0 1 0 0 1 1 1 0 Susceptibility to monomelic amyotrophy KH_1 PF00013.24 gi|284161627|ref|YP_003400250.1| - 1.7e-10 40.3 2.7 4.3e-10 39.1 1.9 1.7 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|284161627|ref|YP_003400250.1| - 6.2e-10 39.0 0.0 4.6e-09 36.2 0.0 2.4 2 0 0 2 2 2 1 S1 RNA binding domain ECR1_N PF14382.1 gi|284161627|ref|YP_003400250.1| - 5.9e-07 28.6 0.0 1.1e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region KH_2 PF07650.12 gi|284161627|ref|YP_003400250.1| - 1.4e-06 27.7 1.4 1.4e-06 27.7 1.0 2.2 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|284161627|ref|YP_003400250.1| - 0.00039 19.9 0.5 0.00088 18.8 0.4 1.6 1 0 0 1 1 1 1 KH domain DUF1676 PF07898.8 gi|284161627|ref|YP_003400250.1| - 0.071 13.4 1.2 0.14 12.4 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) RNase_PH PF01138.16 gi|284161628|ref|YP_003400251.1| - 2.9e-36 124.6 0.0 4e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|284161628|ref|YP_003400251.1| - 3.5e-17 62.0 0.3 7.8e-17 60.9 0.2 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 EF-hand_5 PF13202.1 gi|284161628|ref|YP_003400251.1| - 0.14 11.5 0.8 0.32 10.4 0.0 2.0 2 0 0 2 2 2 0 EF hand RNase_PH PF01138.16 gi|284161629|ref|YP_003400252.1| - 3.3e-31 108.3 0.0 4.7e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|284161629|ref|YP_003400252.1| - 2.2e-07 30.7 0.1 4e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Glycos_transf_1 PF00534.15 gi|284161630|ref|YP_003400253.1| - 8.7e-25 87.1 0.0 1.9e-24 85.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284161630|ref|YP_003400253.1| - 2.6e-13 50.3 0.0 5.9e-13 49.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284161630|ref|YP_003400253.1| - 8.2e-05 22.3 0.1 0.00044 20.0 0.1 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|284161630|ref|YP_003400253.1| - 0.00012 22.3 0.0 0.0033 17.5 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|284161630|ref|YP_003400253.1| - 0.0011 19.1 0.0 0.0025 18.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|284161631|ref|YP_003400254.1| - 6.6e-32 110.2 0.5 1.2e-31 109.3 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284161631|ref|YP_003400254.1| - 1.1e-23 83.9 0.1 2.2e-23 82.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|284161631|ref|YP_003400254.1| - 1.1e-22 80.9 0.0 2.1e-22 79.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|284161631|ref|YP_003400254.1| - 1.3e-12 48.0 0.0 2.8e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|284161631|ref|YP_003400254.1| - 1.8e-08 34.3 0.2 3.8e-08 33.2 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|284161631|ref|YP_003400254.1| - 0.0074 15.8 0.2 0.034 13.6 0.1 2.1 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|284161631|ref|YP_003400254.1| - 0.018 15.3 0.0 0.057 13.6 0.0 1.9 1 0 0 1 1 1 0 Glycosyl transferases group 1 HEPN PF05168.9 gi|284161632|ref|YP_003400255.1| - 2.1e-25 88.8 4.9 2.3e-25 88.7 3.4 1.0 1 0 0 1 1 1 1 HEPN domain ComZ PF10815.3 gi|284161632|ref|YP_003400255.1| - 0.0025 17.5 0.9 0.013 15.2 0.6 2.1 1 1 1 2 2 2 1 ComZ NTP_transf_2 PF01909.18 gi|284161633|ref|YP_003400256.1| - 1e-10 41.7 1.2 1e-10 41.7 0.9 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|284161633|ref|YP_003400256.1| - 6.1e-07 29.4 0.0 7.6e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.8 gi|284161633|ref|YP_003400256.1| - 0.0015 18.1 0.0 0.0019 17.8 0.0 1.1 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 Glycos_transf_1 PF00534.15 gi|284161634|ref|YP_003400257.1| - 6.2e-27 94.0 0.2 2.1e-26 92.3 0.1 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284161634|ref|YP_003400257.1| - 4.8e-18 65.5 0.0 8.4e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284161634|ref|YP_003400257.1| - 2.5e-12 46.8 0.1 4.3e-12 46.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|284161634|ref|YP_003400257.1| - 3.6e-07 30.3 0.0 9.8e-07 28.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284161634|ref|YP_003400257.1| - 3.8e-06 27.1 0.0 1.3e-05 25.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|284161635|ref|YP_003400258.1| - 2.4e-26 92.1 0.1 6.3e-26 90.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284161635|ref|YP_003400258.1| - 8.1e-17 61.6 0.0 1.5e-16 60.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|284161635|ref|YP_003400258.1| - 1.2e-05 25.4 0.0 3e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 CagE_TrbE_VirB PF03135.9 gi|284161635|ref|YP_003400258.1| - 0.016 14.9 1.0 0.045 13.5 0.1 2.1 2 0 0 2 2 2 0 CagE, TrbE, VirB family, component of type IV transporter system FF PF01846.14 gi|284161635|ref|YP_003400258.1| - 0.66 9.9 3.6 1.6 8.7 0.2 2.9 3 0 0 3 3 3 0 FF domain Methyltransf_21 PF05050.7 gi|284161636|ref|YP_003400259.1| - 4.4e-20 72.2 0.1 7.2e-20 71.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|284161636|ref|YP_003400259.1| - 6.8e-08 33.0 0.0 1.2e-07 32.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|284161636|ref|YP_003400259.1| - 5.2e-06 26.1 0.1 9.8e-06 25.2 0.1 1.6 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_22 PF13383.1 gi|284161636|ref|YP_003400259.1| - 0.0028 17.2 0.0 0.0041 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|284161636|ref|YP_003400259.1| - 0.017 14.1 0.0 0.027 13.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|284161636|ref|YP_003400259.1| - 0.032 13.3 0.0 0.052 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Sulfotransfer_1 PF00685.22 gi|284161637|ref|YP_003400260.1| - 0.007 15.6 1.5 0.055 12.7 1.0 2.1 1 1 0 1 1 1 1 Sulfotransferase domain DUF3440 PF11922.3 gi|284161637|ref|YP_003400260.1| - 0.051 13.1 0.1 0.35 10.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3440) Pentaxin PF00354.12 gi|284161638|ref|YP_003400261.1| - 0.037 13.4 0.0 0.045 13.1 0.0 1.1 1 0 0 1 1 1 0 Pentaxin family WhiA_N PF10298.4 gi|284161638|ref|YP_003400261.1| - 0.1 12.4 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 WhiA N-terminal LAGLIDADG-like domain Glycos_transf_2 PF00535.21 gi|284161639|ref|YP_003400262.1| - 0.0042 16.7 0.0 0.0058 16.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Polysacc_synt PF01943.12 gi|284161640|ref|YP_003400263.1| - 3.6e-47 160.9 61.3 4.1e-46 157.4 21.4 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|284161640|ref|YP_003400263.1| - 2e-17 63.3 53.7 4.5e-16 58.9 11.3 3.9 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|284161640|ref|YP_003400263.1| - 5.1e-12 45.7 29.7 5.1e-12 45.7 20.6 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|284161640|ref|YP_003400263.1| - 5.8e-10 38.1 41.1 1.3e-09 37.0 20.6 2.2 1 1 1 2 2 2 2 MviN-like protein ACT PF01842.20 gi|284161640|ref|YP_003400263.1| - 0.083 12.3 0.1 0.22 11.0 0.1 1.7 1 0 0 1 1 1 0 ACT domain Ribosomal_L37ae PF01780.14 gi|284161641|ref|YP_003400264.1| - 5.8e-32 109.4 6.6 6.3e-32 109.3 4.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|284161641|ref|YP_003400264.1| - 0.00019 21.1 4.2 0.00027 20.6 2.9 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284161641|ref|YP_003400264.1| - 0.0018 17.8 0.8 0.003 17.1 0.6 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|284161641|ref|YP_003400264.1| - 0.0023 17.6 1.6 0.0031 17.2 1.1 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-H2C2_2 PF13465.1 gi|284161641|ref|YP_003400264.1| - 0.0046 17.1 1.4 1.4 9.3 0.0 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|284161641|ref|YP_003400264.1| - 0.015 15.2 3.0 0.28 11.1 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Rep_fac-A_C PF08646.5 gi|284161641|ref|YP_003400264.1| - 0.02 14.5 1.8 0.028 14.1 1.3 1.3 1 0 0 1 1 1 0 Replication factor-A C terminal domain IBR PF01485.16 gi|284161641|ref|YP_003400264.1| - 0.025 14.4 0.5 0.037 13.8 0.4 1.3 1 0 0 1 1 1 0 IBR domain zf-FPG_IleRS PF06827.9 gi|284161641|ref|YP_003400264.1| - 0.037 13.6 0.2 0.21 11.2 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.7 gi|284161641|ref|YP_003400264.1| - 0.11 11.8 0.2 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|284161641|ref|YP_003400264.1| - 0.12 12.2 4.0 0.5 10.2 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin zf-IS66 PF13005.2 gi|284161641|ref|YP_003400264.1| - 0.12 12.3 0.9 0.12 12.3 0.6 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.8 gi|284161641|ref|YP_003400264.1| - 0.15 11.5 4.7 0.36 10.3 3.3 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|284161641|ref|YP_003400264.1| - 0.17 11.5 3.3 2.7 7.6 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|284161641|ref|YP_003400264.1| - 0.3 10.3 2.6 6.5 6.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.10 gi|284161641|ref|YP_003400264.1| - 0.33 10.7 9.1 1.4 8.7 1.2 2.2 1 1 1 2 2 2 0 BED zinc finger DZR PF12773.2 gi|284161641|ref|YP_003400264.1| - 0.35 10.7 3.2 1.2 9.0 2.3 1.7 1 1 1 2 2 2 0 Double zinc ribbon DUF4428 PF14471.1 gi|284161641|ref|YP_003400264.1| - 0.54 10.0 5.7 0.68 9.7 0.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) A2L_zn_ribbon PF08792.5 gi|284161641|ref|YP_003400264.1| - 0.57 9.7 3.2 5 6.6 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain PHD PF00628.24 gi|284161641|ref|YP_003400264.1| - 0.59 9.8 3.9 4.9 6.9 0.3 2.1 1 1 1 2 2 2 0 PHD-finger GATA PF00320.22 gi|284161641|ref|YP_003400264.1| - 0.96 8.8 4.1 3.8 6.9 0.3 2.3 1 1 1 2 2 2 0 GATA zinc finger zf-C2H2 PF00096.21 gi|284161641|ref|YP_003400264.1| - 1.2 9.6 4.1 10 6.6 0.4 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|284161641|ref|YP_003400264.1| - 2.9 7.6 5.7 43 3.9 3.9 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|284161642|ref|YP_003400265.1| - 8.5e-09 34.7 2.3 1.1e-08 34.3 1.6 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|284161642|ref|YP_003400265.1| - 0.0066 15.6 2.2 0.11 11.6 1.6 2.0 1 1 1 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284161642|ref|YP_003400265.1| - 0.011 15.4 0.1 0.015 14.9 0.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|284161642|ref|YP_003400265.1| - 0.011 15.3 0.1 0.013 15.1 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|284161642|ref|YP_003400265.1| - 0.013 14.9 1.2 0.016 14.6 0.8 1.1 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF1451 PF07295.6 gi|284161642|ref|YP_003400265.1| - 0.014 15.1 0.2 0.015 15.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zinc_ribbon_2 PF13240.1 gi|284161642|ref|YP_003400265.1| - 0.016 14.6 2.0 0.57 9.7 0.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284161642|ref|YP_003400265.1| - 0.022 14.6 1.1 0.083 12.8 0.8 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF3797 PF12677.2 gi|284161642|ref|YP_003400265.1| - 0.024 14.2 1.8 0.029 13.9 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TFIIS_C PF01096.13 gi|284161642|ref|YP_003400265.1| - 0.025 14.2 0.9 0.71 9.5 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.1 gi|284161642|ref|YP_003400265.1| - 0.043 13.5 2.7 0.064 12.9 1.8 1.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DUF4428 PF14471.1 gi|284161642|ref|YP_003400265.1| - 0.047 13.4 0.1 0.051 13.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) DZR PF12773.2 gi|284161642|ref|YP_003400265.1| - 0.047 13.4 0.3 0.1 12.4 0.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|284161642|ref|YP_003400265.1| - 0.059 13.0 1.9 0.31 10.7 0.3 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS RecR PF02132.10 gi|284161642|ref|YP_003400265.1| - 0.071 12.5 2.3 0.1 12.0 0.1 2.0 2 0 0 2 2 2 0 RecR protein zf-RING_3 PF14369.1 gi|284161642|ref|YP_003400265.1| - 0.081 12.9 0.2 0.11 12.5 0.1 1.2 1 0 0 1 1 1 0 zinc-finger zf-dskA_traR PF01258.12 gi|284161642|ref|YP_003400265.1| - 0.085 12.6 3.6 1 9.1 0.4 2.1 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Nudix_N_2 PF14803.1 gi|284161642|ref|YP_003400265.1| - 0.089 12.4 0.5 8.9 6.1 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal Cys_rich_CPXG PF14255.1 gi|284161642|ref|YP_003400265.1| - 0.13 12.0 0.5 6.6 6.6 0.0 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG PHD PF00628.24 gi|284161642|ref|YP_003400265.1| - 0.14 11.8 0.8 0.19 11.4 0.6 1.1 1 0 0 1 1 1 0 PHD-finger Desulfoferrod_N PF06397.7 gi|284161642|ref|YP_003400265.1| - 0.19 11.1 5.9 0.48 9.8 0.8 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Cys_rich_KTR PF14205.1 gi|284161642|ref|YP_003400265.1| - 0.21 11.0 1.2 0.32 10.4 0.2 1.7 2 0 0 2 2 2 0 Cysteine-rich KTR zf-HIT PF04438.11 gi|284161642|ref|YP_003400265.1| - 0.22 11.1 1.7 4.5 6.9 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-C4_Topoisom PF01396.14 gi|284161642|ref|YP_003400265.1| - 0.26 10.8 0.3 0.26 10.8 0.2 1.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|284161642|ref|YP_003400265.1| - 0.34 10.6 2.2 9.8 5.9 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.2 gi|284161642|ref|YP_003400265.1| - 0.56 10.0 2.5 0.82 9.5 0.2 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284161642|ref|YP_003400265.1| - 2.4 7.5 8.4 4.6 6.6 0.5 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|284161642|ref|YP_003400265.1| - 2.7 7.7 4.7 6.8 6.4 3.3 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|284161642|ref|YP_003400265.1| - 5.3 6.9 5.6 11 6.0 0.2 2.1 1 1 1 2 2 2 0 Rubredoxin DMRL_synthase PF00885.14 gi|284161643|ref|YP_003400266.1| - 1.9e-40 137.8 0.9 2.2e-40 137.6 0.6 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|284161644|ref|YP_003400267.1| - 7.5e-73 245.5 0.0 8.6e-73 245.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|284161644|ref|YP_003400267.1| - 1.9e-06 27.2 0.0 3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|284161644|ref|YP_003400267.1| - 3e-06 25.7 0.0 5.7e-06 24.8 0.0 1.5 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|284161644|ref|YP_003400267.1| - 6.8e-06 25.0 0.0 1.2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|284161644|ref|YP_003400267.1| - 4.4e-05 22.7 0.1 8.5e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|284161644|ref|YP_003400267.1| - 0.00047 18.9 0.1 0.035 12.7 0.0 2.6 3 1 0 3 3 3 1 Allinase OKR_DC_1 PF01276.15 gi|284161644|ref|YP_003400267.1| - 0.021 13.3 0.0 0.035 12.6 0.0 1.4 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Nsp3_PL2pro PF12124.3 gi|284161644|ref|YP_003400267.1| - 0.07 12.6 0.1 1.6 8.3 0.0 2.6 2 0 0 2 2 2 0 Coronavirus polyprotein cleavage domain Aminotran_3 PF00202.16 gi|284161644|ref|YP_003400267.1| - 0.13 11.0 0.0 0.22 10.3 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-III KaiC PF06745.8 gi|284161645|ref|YP_003400268.1| - 2.1e-09 36.8 0.1 2.9e-09 36.4 0.1 1.2 1 0 0 1 1 1 1 KaiC NB-ARC PF00931.17 gi|284161645|ref|YP_003400268.1| - 2.7e-05 23.1 0.1 4e-05 22.6 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_22 PF13401.1 gi|284161645|ref|YP_003400268.1| - 0.00025 21.1 0.0 0.00042 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|284161645|ref|YP_003400268.1| - 0.00034 20.1 0.0 0.00053 19.5 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase DUF835 PF05763.7 gi|284161645|ref|YP_003400268.1| - 0.00076 19.0 0.4 0.0031 17.0 0.3 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF835) DUF2075 PF09848.4 gi|284161645|ref|YP_003400268.1| - 0.0014 17.6 0.0 0.0022 17.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|284161645|ref|YP_003400268.1| - 0.0018 17.9 0.2 0.0067 16.1 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|284161645|ref|YP_003400268.1| - 0.0023 17.6 0.0 0.0056 16.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain cobW PF02492.14 gi|284161645|ref|YP_003400268.1| - 0.0046 16.4 0.0 0.0079 15.6 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|284161645|ref|YP_003400268.1| - 0.006 15.6 0.0 0.01 14.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|284161645|ref|YP_003400268.1| - 0.0071 16.2 0.0 0.012 15.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain KAP_NTPase PF07693.9 gi|284161645|ref|YP_003400268.1| - 0.013 14.5 0.0 0.019 13.9 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain AAA PF00004.24 gi|284161645|ref|YP_003400268.1| - 0.014 15.5 0.1 0.024 14.8 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|284161645|ref|YP_003400268.1| - 0.027 13.8 0.2 0.46 9.8 0.2 2.3 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|284161645|ref|YP_003400268.1| - 0.035 13.7 0.2 0.12 12.0 0.0 1.8 1 1 1 2 2 2 0 Archaeal ATPase AAA_11 PF13086.1 gi|284161645|ref|YP_003400268.1| - 0.042 13.4 0.0 0.045 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|284161645|ref|YP_003400268.1| - 0.044 13.3 0.1 0.12 11.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|284161645|ref|YP_003400268.1| - 0.051 13.8 0.3 0.12 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|284161645|ref|YP_003400268.1| - 0.062 13.1 0.0 0.073 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284161645|ref|YP_003400268.1| - 0.062 14.1 0.0 0.12 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|284161645|ref|YP_003400268.1| - 0.073 13.2 0.0 0.65 10.1 0.0 2.1 2 0 0 2 2 2 0 RNA helicase MMR_HSR1 PF01926.18 gi|284161645|ref|YP_003400268.1| - 0.091 12.7 0.1 0.14 12.1 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Elong_Iki1 PF10483.4 gi|284161645|ref|YP_003400268.1| - 0.098 12.0 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 Elongator subunit Iki1 NTPase_1 PF03266.10 gi|284161645|ref|YP_003400268.1| - 0.11 12.2 0.2 0.38 10.4 0.0 2.0 1 1 1 2 2 2 0 NTPase AAA_16 PF13191.1 gi|284161645|ref|YP_003400268.1| - 0.11 12.5 0.1 0.22 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain MarC PF01914.12 gi|284161646|ref|YP_003400269.1| - 1.8e-59 200.2 10.4 2.1e-59 200.0 7.2 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.11 gi|284161646|ref|YP_003400269.1| - 0.0004 19.8 8.7 0.0078 15.6 5.9 2.2 1 1 0 1 1 1 1 Integral membrane protein TerC family Fumerase PF05681.9 gi|284161647|ref|YP_003400270.1| - 1e-92 310.0 0.1 1.1e-92 309.9 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|284161648|ref|YP_003400271.1| - 1.1e-52 178.1 0.0 1.3e-52 177.9 0.0 1.1 1 0 0 1 1 1 1 Fumarase C-terminus Macro PF01661.16 gi|284161649|ref|YP_003400272.1| - 3.9e-31 107.3 0.1 5.2e-31 106.9 0.1 1.2 1 0 0 1 1 1 1 Macro domain GRDB PF07355.7 gi|284161649|ref|YP_003400272.1| - 0.014 14.3 0.0 0.018 13.9 0.0 1.2 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) PadR PF03551.9 gi|284161650|ref|YP_003400273.1| - 3.8e-14 52.2 0.1 9.2e-14 50.9 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|284161650|ref|YP_003400273.1| - 5.9e-06 26.5 0.2 0.0008 19.6 0.0 2.9 3 0 0 3 3 3 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|284161650|ref|YP_003400273.1| - 8.2e-05 22.6 0.0 0.00038 20.5 0.0 1.9 1 1 0 1 1 1 1 Penicillinase repressor DUF4364 PF14277.1 gi|284161650|ref|YP_003400273.1| - 0.00023 20.8 0.4 0.00033 20.3 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) FUR PF01475.14 gi|284161650|ref|YP_003400273.1| - 0.0013 18.5 0.1 0.11 12.4 0.0 2.8 1 1 2 3 3 3 1 Ferric uptake regulator family TrmB PF01978.14 gi|284161650|ref|YP_003400273.1| - 0.0016 18.0 1.0 0.011 15.3 0.1 2.7 3 1 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|284161650|ref|YP_003400273.1| - 0.0034 17.1 0.7 0.012 15.4 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix Mrr_N PF14338.1 gi|284161650|ref|YP_003400273.1| - 0.025 14.6 0.4 0.71 9.9 0.0 2.9 3 0 0 3 3 3 0 Mrr N-terminal domain Stk19 PF10494.4 gi|284161650|ref|YP_003400273.1| - 0.05 12.9 0.7 0.078 12.3 0.5 1.3 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 DUF4600 PF15372.1 gi|284161650|ref|YP_003400273.1| - 0.073 13.2 6.8 0.2 11.8 0.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4600) DUF3877 PF12993.2 gi|284161650|ref|YP_003400273.1| - 0.1 12.1 0.3 1.5 8.3 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function, E. rectale Gene description (DUF3877) HTH_22 PF13309.1 gi|284161650|ref|YP_003400273.1| - 0.59 9.9 3.3 8.6 6.1 0.0 3.4 4 0 0 4 4 4 0 HTH domain NPCBM_assoc PF10633.4 gi|284161651|ref|YP_003400274.1| - 1.2e-10 41.2 0.0 0.023 14.7 0.0 5.5 6 0 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|284161651|ref|YP_003400274.1| - 0.00035 20.5 0.9 8.8 6.4 0.0 4.5 4 0 0 4 4 4 2 CARDB Transglut_C PF00927.17 gi|284161651|ref|YP_003400274.1| - 0.0033 17.4 0.1 12 5.9 0.0 3.9 3 0 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain MFS_1 PF07690.11 gi|284161652|ref|YP_003400275.1| - 5.4e-55 186.5 35.2 5.4e-55 186.5 24.4 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|284161652|ref|YP_003400275.1| - 1.3e-08 33.4 17.1 5.2e-06 24.8 7.3 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector PUCC PF03209.10 gi|284161652|ref|YP_003400275.1| - 1.4e-05 24.0 0.1 1.4e-05 24.0 0.1 3.3 2 1 1 3 3 3 2 PUCC protein Sugar_tr PF00083.19 gi|284161652|ref|YP_003400275.1| - 0.0013 17.4 24.5 0.0073 14.9 8.3 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|284161652|ref|YP_003400275.1| - 0.013 15.2 4.7 0.016 15.0 0.8 2.8 2 0 0 2 2 2 0 MFS_1 like family Response_reg PF00072.19 gi|284161653|ref|YP_003400276.1| - 1.5e-24 86.1 1.1 1.7e-24 85.9 0.8 1.0 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|284161654|ref|YP_003400277.1| - 4.3e-23 81.1 0.0 8.8e-23 80.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|284161654|ref|YP_003400277.1| - 1.5e-16 60.6 0.1 2e-15 57.0 0.0 2.6 2 1 0 2 2 2 1 PAS domain PAS PF00989.19 gi|284161654|ref|YP_003400277.1| - 5.8e-14 51.8 0.0 2.5e-13 49.8 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|284161654|ref|YP_003400277.1| - 9.6e-10 38.4 0.0 4e-09 36.4 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.6 gi|284161654|ref|YP_003400277.1| - 1.3e-09 38.0 0.0 5.6e-09 35.9 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|284161654|ref|YP_003400277.1| - 1.3e-06 28.1 0.0 2.7e-06 27.1 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|284161654|ref|YP_003400277.1| - 6.5e-06 25.8 0.0 2.3e-05 24.0 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|284161654|ref|YP_003400277.1| - 0.00026 20.6 0.0 0.00047 19.8 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|284161654|ref|YP_003400277.1| - 0.0007 19.5 0.2 0.0015 18.5 0.1 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|284161654|ref|YP_003400277.1| - 0.012 15.5 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 PAS domain KaiC PF06745.8 gi|284161655|ref|YP_003400278.1| - 3.1e-84 281.6 3.1 7.2e-42 143.0 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|284161655|ref|YP_003400278.1| - 2.4e-27 95.5 0.0 8e-14 51.4 0.1 2.2 2 0 0 2 2 2 2 AAA domain GvpD PF07088.6 gi|284161655|ref|YP_003400278.1| - 4e-12 45.2 2.8 1e-07 30.6 0.1 3.4 1 1 1 2 2 2 2 GvpD gas vesicle protein AAA_14 PF13173.1 gi|284161655|ref|YP_003400278.1| - 1.1e-11 44.7 0.1 0.00016 21.5 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|284161655|ref|YP_003400278.1| - 4.2e-11 42.4 0.0 0.00023 20.8 0.1 2.6 2 0 0 2 2 2 2 Part of AAA domain AAA_22 PF13401.1 gi|284161655|ref|YP_003400278.1| - 2.3e-10 40.6 0.8 3.4e-06 27.2 0.5 3.2 2 1 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|284161655|ref|YP_003400278.1| - 6.9e-10 39.0 1.2 4.5e-05 23.2 0.8 2.7 2 1 0 2 2 2 2 Archaeal ATPase IstB_IS21 PF01695.12 gi|284161655|ref|YP_003400278.1| - 1.6e-09 37.4 0.1 0.0002 20.8 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein RecA PF00154.16 gi|284161655|ref|YP_003400278.1| - 4.4e-09 35.8 0.2 0.0011 18.1 0.0 2.3 2 0 0 2 2 2 2 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|284161655|ref|YP_003400278.1| - 4.9e-09 35.4 0.1 2.2e-05 23.4 0.1 2.4 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain Rad51 PF08423.6 gi|284161655|ref|YP_003400278.1| - 7.3e-09 34.9 0.2 5.6e-06 25.4 0.0 2.6 2 0 0 2 2 2 2 Rad51 DUF2075 PF09848.4 gi|284161655|ref|YP_003400278.1| - 1.6e-08 33.8 0.1 0.00034 19.7 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.1 gi|284161655|ref|YP_003400278.1| - 1.8e-08 34.7 0.0 0.00092 19.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|284161655|ref|YP_003400278.1| - 3.5e-08 33.2 0.1 0.00014 21.5 0.1 2.8 2 1 0 2 2 2 2 NACHT domain CbiA PF01656.18 gi|284161655|ref|YP_003400278.1| - 6.7e-07 28.8 0.4 3.3e-05 23.3 0.1 2.4 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|284161655|ref|YP_003400278.1| - 1.1e-06 29.4 1.9 0.0053 17.5 0.1 2.7 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284161655|ref|YP_003400278.1| - 1.1e-06 28.7 0.5 0.00074 19.5 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|284161655|ref|YP_003400278.1| - 2.1e-06 26.8 0.0 0.022 13.6 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA PF00004.24 gi|284161655|ref|YP_003400278.1| - 6.7e-06 26.3 4.9 0.0029 17.7 0.2 3.9 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|284161655|ref|YP_003400278.1| - 7.4e-06 25.6 0.2 0.0013 18.3 0.2 2.6 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|284161655|ref|YP_003400278.1| - 9.5e-06 25.6 0.1 0.025 14.5 0.0 2.6 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.1 gi|284161655|ref|YP_003400278.1| - 2.2e-05 24.1 0.0 0.24 10.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|284161655|ref|YP_003400278.1| - 2.6e-05 23.5 0.3 0.00053 19.2 0.1 2.7 3 0 0 3 3 3 1 PhoH-like protein Viral_helicase1 PF01443.13 gi|284161655|ref|YP_003400278.1| - 2.9e-05 23.7 0.0 0.21 11.0 0.0 2.9 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|284161655|ref|YP_003400278.1| - 4.6e-05 23.3 0.1 0.099 12.4 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit ABC_tran PF00005.22 gi|284161655|ref|YP_003400278.1| - 7.1e-05 23.1 0.3 0.067 13.4 0.2 2.5 2 1 0 2 2 2 1 ABC transporter AAA_10 PF12846.2 gi|284161655|ref|YP_003400278.1| - 0.00015 21.3 0.0 0.2 11.0 0.0 2.7 2 1 1 3 3 3 2 AAA-like domain Terminase_6 PF03237.10 gi|284161655|ref|YP_003400278.1| - 0.00026 19.8 0.0 0.0099 14.6 0.0 2.1 2 0 0 2 2 2 1 Terminase-like family AAA_31 PF13614.1 gi|284161655|ref|YP_003400278.1| - 0.00027 20.8 0.0 0.039 13.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|284161655|ref|YP_003400278.1| - 0.00041 19.8 1.2 0.76 9.2 0.0 3.5 4 0 0 4 4 3 1 FtsK/SpoIIIE family AAA_33 PF13671.1 gi|284161655|ref|YP_003400278.1| - 0.00051 19.9 0.2 0.33 10.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|284161655|ref|YP_003400278.1| - 0.00052 19.5 0.0 0.064 12.7 0.0 2.2 1 1 1 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|284161655|ref|YP_003400278.1| - 0.00054 19.4 0.2 0.54 9.8 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain UvrD-helicase PF00580.16 gi|284161655|ref|YP_003400278.1| - 0.00055 19.3 2.6 0.3 10.3 0.0 2.5 2 1 1 3 3 3 2 UvrD/REP helicase N-terminal domain NTPase_1 PF03266.10 gi|284161655|ref|YP_003400278.1| - 0.00078 19.1 0.3 2.6 7.7 0.0 3.4 3 1 0 3 3 3 0 NTPase TrwB_AAD_bind PF10412.4 gi|284161655|ref|YP_003400278.1| - 0.001 17.8 0.2 0.29 9.6 0.0 2.6 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain AAA_5 PF07728.9 gi|284161655|ref|YP_003400278.1| - 0.0013 18.4 0.1 0.046 13.4 0.0 2.7 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_11 PF13086.1 gi|284161655|ref|YP_003400278.1| - 0.0014 18.2 0.0 0.75 9.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|284161655|ref|YP_003400278.1| - 0.0015 17.9 0.3 1.4 8.3 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|284161655|ref|YP_003400278.1| - 0.0023 17.6 0.3 0.47 10.1 0.0 3.1 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B PAXNEB PF05625.6 gi|284161655|ref|YP_003400278.1| - 0.0033 16.3 0.5 0.21 10.3 0.0 2.2 2 0 0 2 2 2 1 PAXNEB protein SRP54 PF00448.17 gi|284161655|ref|YP_003400278.1| - 0.0035 16.8 0.2 0.27 10.6 0.1 2.5 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain RNA_helicase PF00910.17 gi|284161655|ref|YP_003400278.1| - 0.004 17.2 0.0 1.8 8.7 0.0 2.7 3 0 0 3 3 2 1 RNA helicase DEAD PF00270.24 gi|284161655|ref|YP_003400278.1| - 0.0057 16.1 0.0 2 7.8 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_23 PF13476.1 gi|284161655|ref|YP_003400278.1| - 0.0064 16.8 1.2 0.17 12.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|284161655|ref|YP_003400278.1| - 0.0065 16.0 0.0 1.4 8.4 0.0 2.6 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|284161655|ref|YP_003400278.1| - 0.0092 15.0 0.0 2.7 7.0 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin NB-ARC PF00931.17 gi|284161655|ref|YP_003400278.1| - 0.013 14.4 0.2 0.046 12.5 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain DUF835 PF05763.7 gi|284161655|ref|YP_003400278.1| - 0.014 14.9 0.5 0.42 10.1 0.0 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF835) UPF0079 PF02367.12 gi|284161655|ref|YP_003400278.1| - 0.015 14.9 1.8 2.4 7.7 0.0 3.1 4 0 0 4 4 3 0 Uncharacterised P-loop hydrolase UPF0079 Thymidylate_kin PF02223.12 gi|284161655|ref|YP_003400278.1| - 0.03 13.6 0.0 1.4 8.2 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase CobU PF02283.11 gi|284161655|ref|YP_003400278.1| - 0.046 13.1 0.1 20 4.5 0.0 3.3 4 0 0 4 4 4 0 Cobinamide kinase / cobinamide phosphate guanyltransferase CobA_CobO_BtuR PF02572.10 gi|284161655|ref|YP_003400278.1| - 0.051 13.2 0.1 12 5.5 0.3 3.0 2 1 0 2 2 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RuvB_N PF05496.7 gi|284161655|ref|YP_003400278.1| - 0.053 12.5 0.2 1.3 8.0 0.0 2.6 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus Zot PF05707.7 gi|284161655|ref|YP_003400278.1| - 0.061 12.7 0.1 9.9 5.5 0.0 2.4 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Sigma54_activat PF00158.21 gi|284161655|ref|YP_003400278.1| - 0.065 12.7 0.3 1.5 8.2 0.0 2.5 3 0 0 3 3 2 0 Sigma-54 interaction domain Miro PF08477.8 gi|284161655|ref|YP_003400278.1| - 0.091 13.2 0.0 6.3 7.3 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein DAP3 PF10236.4 gi|284161655|ref|YP_003400278.1| - 0.11 11.4 0.0 4.5 6.1 0.0 2.5 3 0 0 3 3 2 0 Mitochondrial ribosomal death-associated protein 3 DUF258 PF03193.11 gi|284161655|ref|YP_003400278.1| - 0.14 11.3 0.1 0.42 9.7 0.0 1.8 2 0 0 2 2 1 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|284161655|ref|YP_003400278.1| - 0.15 11.1 0.1 7.7 5.6 0.0 2.7 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI Response_reg PF00072.19 gi|284161656|ref|YP_003400279.1| - 0.012 15.6 0.0 0.023 14.7 0.0 1.5 1 1 0 1 1 1 0 Response regulator receiver domain DUF4440 PF14534.1 gi|284161656|ref|YP_003400279.1| - 0.083 13.1 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) NLBH PF05211.7 gi|284161656|ref|YP_003400279.1| - 0.11 11.6 0.0 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 Neuraminyllactose-binding hemagglutinin precursor (NLBH) PAS_4 PF08448.5 gi|284161657|ref|YP_003400280.1| - 0.00079 19.4 0.0 0.18 11.8 0.0 2.5 1 1 1 2 2 2 2 PAS fold HisKA PF00512.20 gi|284161657|ref|YP_003400280.1| - 0.00092 19.1 1.1 0.0033 17.3 0.0 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|284161657|ref|YP_003400280.1| - 0.0076 16.6 0.1 0.077 13.3 0.0 2.3 1 1 1 2 2 2 1 PAS domain Med2 PF11214.3 gi|284161657|ref|YP_003400280.1| - 0.018 15.0 1.4 0.018 15.0 1.0 2.6 3 0 0 3 3 3 0 Mediator complex subunit 2 RFPL3_antisense PF10489.4 gi|284161657|ref|YP_003400280.1| - 0.073 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Ret finger protein-like 3 antisense Med11 PF10280.4 gi|284161657|ref|YP_003400280.1| - 0.077 13.0 2.5 0.15 12.1 0.2 2.3 2 0 0 2 2 2 0 Mediator complex protein DWNN PF08783.6 gi|284161657|ref|YP_003400280.1| - 0.46 10.4 7.0 2 8.4 0.8 3.0 2 1 0 2 2 2 0 DWNN domain IDO PF01231.13 gi|284161657|ref|YP_003400280.1| - 3.6 5.9 5.9 1.1 7.5 0.2 2.5 2 1 1 3 3 3 0 Indoleamine 2,3-dioxygenase NTP_transf_3 PF12804.2 gi|284161659|ref|YP_003400282.1| - 1.4e-28 99.9 0.0 1.7e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.11 gi|284161659|ref|YP_003400282.1| - 0.0021 17.0 0.0 0.011 14.7 0.0 1.9 1 1 0 1 1 1 1 Guanylyl transferase CofC like AFT PF08731.6 gi|284161659|ref|YP_003400282.1| - 0.045 13.9 0.0 0.061 13.5 0.0 1.2 1 0 0 1 1 1 0 Transcription factor AFT Radical_SAM PF04055.16 gi|284161660|ref|YP_003400283.1| - 2.7e-31 108.9 2.2 4.9e-31 108.1 0.3 2.2 3 0 0 3 3 3 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|284161660|ref|YP_003400283.1| - 1.7e-22 79.4 0.1 3e-22 78.6 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|284161660|ref|YP_003400283.1| - 2.5e-10 40.6 0.3 7.3e-10 39.1 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284161660|ref|YP_003400283.1| - 3.3e-09 36.8 0.0 7.4e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPO22 PF08631.5 gi|284161660|ref|YP_003400283.1| - 0.082 11.9 0.0 2.7 7.0 0.0 2.1 2 0 0 2 2 2 0 Meiosis protein SPO22/ZIP4 like bPH_5 PF10882.3 gi|284161661|ref|YP_003400284.1| - 2.6e-25 88.1 0.0 3.5e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain DUF4131 PF13567.1 gi|284161661|ref|YP_003400284.1| - 0.0057 16.0 0.3 0.0073 15.7 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DNA_ligase_A_M PF01068.16 gi|284161662|ref|YP_003400285.1| - 1.9e-60 203.6 2.5 3.5e-60 202.8 1.7 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|284161662|ref|YP_003400285.1| - 1.7e-54 184.3 0.1 1.3e-49 168.3 0.0 3.1 2 1 1 3 3 3 3 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|284161662|ref|YP_003400285.1| - 1.5e-23 82.9 0.1 5.3e-23 81.2 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|284161662|ref|YP_003400285.1| - 0.00069 19.3 0.9 1.2 8.7 0.0 2.5 2 1 0 2 2 2 2 mRNA capping enzyme, catalytic domain DNA_ligase_OB_2 PF14743.1 gi|284161662|ref|YP_003400285.1| - 0.021 14.4 0.0 0.081 12.6 0.0 2.0 1 1 0 1 1 1 0 DNA ligase OB-like domain SSPI PF14098.1 gi|284161662|ref|YP_003400285.1| - 0.061 13.2 1.7 15 5.5 0.0 3.5 3 0 0 3 3 3 0 Small, acid-soluble spore protein I Cdc6_C PF09079.6 gi|284161662|ref|YP_003400285.1| - 0.074 12.7 0.0 2.9 7.6 0.0 2.8 2 1 1 3 3 3 0 CDC6, C terminal Mitoc_L55 PF09776.4 gi|284161662|ref|YP_003400285.1| - 0.1 12.2 0.5 0.25 10.9 0.2 1.7 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L55 DUF310 PF03750.8 gi|284161662|ref|YP_003400285.1| - 0.26 11.4 2.7 3 8.0 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF310) CGI-121 PF08617.5 gi|284161663|ref|YP_003400286.1| - 1.4e-21 76.8 1.3 1.7e-21 76.5 0.9 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 KaiC PF06745.8 gi|284161664|ref|YP_003400287.1| - 2.1e-22 79.3 0.3 2.5e-22 79.1 0.2 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|284161664|ref|YP_003400287.1| - 3e-07 29.6 3.7 2.3e-05 23.4 0.3 2.0 1 1 1 2 2 2 2 PAXNEB protein DUF1269 PF06897.7 gi|284161664|ref|YP_003400287.1| - 0.012 15.6 0.4 0.039 13.9 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) IstB_IS21 PF01695.12 gi|284161664|ref|YP_003400287.1| - 0.06 12.7 0.0 0.14 11.5 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF1040 PF06288.8 gi|284161664|ref|YP_003400287.1| - 0.075 13.2 0.2 3.4 7.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1040) DUF2400 PF09674.5 gi|284161664|ref|YP_003400287.1| - 0.084 12.5 0.3 0.11 12.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) SDH_sah PF01972.11 gi|284161665|ref|YP_003400288.1| - 6.8e-152 504.1 0.7 8.4e-152 503.8 0.5 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|284161665|ref|YP_003400288.1| - 1.3e-09 38.0 0.3 5.5e-09 35.9 0.0 1.8 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|284161665|ref|YP_003400288.1| - 0.00044 20.0 0.0 0.00079 19.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase family S49 ECH PF00378.15 gi|284161665|ref|YP_003400288.1| - 0.08 12.0 0.1 0.17 11.0 0.0 1.6 1 1 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family DUF751 PF05421.6 gi|284161666|ref|YP_003400289.1| - 0.0027 17.9 1.1 0.0027 17.9 0.7 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF751) TauE PF01925.14 gi|284161666|ref|YP_003400289.1| - 0.13 11.6 14.2 0.28 10.6 9.8 1.6 1 1 0 1 1 1 0 Sulfite exporter TauE/SafE DUF624 PF04854.9 gi|284161666|ref|YP_003400289.1| - 0.19 11.6 0.2 0.19 11.6 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function, DUF624 DUF1129 PF06570.6 gi|284161666|ref|YP_003400289.1| - 1.4 8.2 4.2 0.97 8.6 1.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) FA_desaturase PF00487.19 gi|284161666|ref|YP_003400289.1| - 1.4 8.3 9.7 1.6 8.0 6.7 1.1 1 0 0 1 1 1 0 Fatty acid desaturase DUF2207 PF09972.4 gi|284161666|ref|YP_003400289.1| - 3.3 6.1 9.6 3.5 6.0 6.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3593 PF12159.3 gi|284161666|ref|YP_003400289.1| - 7.1 6.4 8.8 12 5.7 6.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3593) HTH_24 PF13412.1 gi|284161667|ref|YP_003400290.1| - 1.4e-11 43.5 1.7 2.5e-11 42.7 1.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284161667|ref|YP_003400290.1| - 2.4e-09 36.5 0.1 3.9e-09 35.8 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|284161667|ref|YP_003400290.1| - 4e-07 29.6 0.0 7.1e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 AsnC family MarR PF01047.17 gi|284161667|ref|YP_003400290.1| - 2.4e-05 23.9 0.2 4.1e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284161667|ref|YP_003400290.1| - 7.2e-05 22.3 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|284161667|ref|YP_003400290.1| - 0.0037 16.8 0.9 0.0068 16.0 0.7 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|284161667|ref|YP_003400290.1| - 0.017 14.9 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|284161667|ref|YP_003400290.1| - 0.019 15.2 0.2 0.035 14.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|284161667|ref|YP_003400290.1| - 0.019 14.6 0.2 0.034 13.8 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|284161667|ref|YP_003400290.1| - 0.03 14.3 0.2 0.054 13.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|284161667|ref|YP_003400290.1| - 0.066 13.0 2.1 0.07 12.9 0.4 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix LexA_DNA_bind PF01726.11 gi|284161667|ref|YP_003400290.1| - 0.075 12.6 0.2 0.13 11.7 0.2 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Rrf2 PF02082.15 gi|284161667|ref|YP_003400290.1| - 0.085 12.9 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF3795 PF12675.2 gi|284161667|ref|YP_003400290.1| - 0.42 10.8 6.6 0.99 9.6 4.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3795) TauE PF01925.14 gi|284161668|ref|YP_003400291.1| - 2.2e-43 148.4 43.9 2.5e-43 148.2 30.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE OrfB_Zn_ribbon PF07282.6 gi|284161669|ref|YP_003400292.1| - 0.045 13.3 0.0 0.12 12.0 0.0 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Radical_SAM PF04055.16 gi|284161670|ref|YP_003400293.1| - 6.6e-19 68.6 0.0 1e-18 68.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284161670|ref|YP_003400293.1| - 5.9e-06 26.4 0.0 8.5e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284161670|ref|YP_003400293.1| - 7.4e-06 25.9 0.0 1.1e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain UPF0104 PF03706.8 gi|284161671|ref|YP_003400294.1| - 1.3e-31 110.0 36.4 1.6e-31 109.6 25.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|284161672|ref|YP_003400295.1| - 1.5e-17 63.8 0.0 2.6e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284161672|ref|YP_003400295.1| - 1.4e-07 31.5 0.0 4.5e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|284161672|ref|YP_003400295.1| - 0.004 16.4 0.0 0.11 11.8 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase family 21 Rhamno_transf PF11316.3 gi|284161672|ref|YP_003400295.1| - 0.019 14.1 0.1 0.27 10.3 0.0 2.1 2 0 0 2 2 2 0 Putative rhamnosyl transferase His_biosynth PF00977.16 gi|284161672|ref|YP_003400295.1| - 0.15 11.3 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein Amino_oxidase PF01593.19 gi|284161673|ref|YP_003400296.1| - 1.1e-16 61.0 0.2 7e-15 55.0 0.1 2.1 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|284161673|ref|YP_003400296.1| - 7.4e-10 38.7 0.2 1.5e-09 37.7 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|284161673|ref|YP_003400296.1| - 0.00035 20.6 0.2 0.47 10.4 0.1 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284161673|ref|YP_003400296.1| - 0.0018 17.2 0.4 0.42 9.4 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase MAF_flag10 PF01973.13 gi|284161674|ref|YP_003400297.1| - 1.7e-18 66.6 0.0 2.4e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 SNase PF00565.12 gi|284161675|ref|YP_003400298.1| - 6.5e-27 93.9 0.2 8.3e-27 93.5 0.1 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Serpulina_VSP PF05540.6 gi|284161675|ref|YP_003400298.1| - 0.018 13.7 0.2 0.021 13.6 0.1 1.1 1 0 0 1 1 1 0 Serpulina hyodysenteriae variable surface protein tRNA-synt_1c PF00749.16 gi|284161676|ref|YP_003400299.1| - 2.5e-71 239.8 0.0 3.3e-71 239.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|284161676|ref|YP_003400299.1| - 5.4e-27 94.5 0.2 2.2e-26 92.5 0.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain UPF0113 PF03657.8 gi|284161677|ref|YP_003400300.1| - 4e-39 133.8 5.3 4.7e-39 133.6 3.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) PUA PF01472.15 gi|284161677|ref|YP_003400300.1| - 3.8e-09 36.1 0.3 7.2e-09 35.2 0.2 1.4 1 0 0 1 1 1 1 PUA domain Nol1_Nop2_Fmu_2 PF13636.1 gi|284161677|ref|YP_003400300.1| - 0.0036 17.3 0.0 0.0062 16.6 0.0 1.4 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis tRNA_int_endo_N PF02778.9 gi|284161677|ref|YP_003400300.1| - 0.025 14.1 2.9 2 8.0 0.0 3.2 3 0 0 3 3 3 0 tRNA intron endonuclease, N-terminal domain PemK PF02452.12 gi|284161680|ref|YP_003400303.1| - 5.7e-21 74.7 0.1 6.4e-21 74.6 0.1 1.0 1 0 0 1 1 1 1 PemK-like protein DDE_Tnp_1 PF01609.16 gi|284161682|ref|YP_003400305.1| - 1.7e-05 24.4 2.4 3.3e-05 23.5 1.7 1.5 1 1 0 1 1 1 1 Transposase DDE domain Toprim PF01751.17 gi|284161683|ref|YP_003400306.1| - 0.074 13.0 0.2 1.2 9.1 0.1 2.5 2 1 0 2 2 2 0 Toprim domain Crp PF00325.15 gi|284161683|ref|YP_003400306.1| - 0.08 12.4 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family N6_Mtase PF02384.11 gi|284161684|ref|YP_003400307.1| - 5.2e-10 38.8 0.0 1.6e-06 27.4 0.0 3.2 3 0 0 3 3 3 2 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|284161684|ref|YP_003400307.1| - 2.3e-08 34.0 0.0 5.6e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain ArdA PF07275.6 gi|284161684|ref|YP_003400307.1| - 0.0021 18.3 0.0 0.0049 17.1 0.0 1.6 1 0 0 1 1 1 1 Antirestriction protein (ArdA) MTS PF05175.9 gi|284161684|ref|YP_003400307.1| - 0.0085 15.4 0.0 2.9 7.2 0.0 2.9 3 0 0 3 3 3 2 Methyltransferase small domain UPF0020 PF01170.13 gi|284161684|ref|YP_003400307.1| - 0.1 12.1 0.0 3.9 6.9 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 GalP_UDP_transf PF01087.17 gi|284161684|ref|YP_003400307.1| - 0.18 11.8 0.0 0.45 10.5 0.0 1.5 2 0 0 2 2 2 0 Galactose-1-phosphate uridyl transferase, N-terminal domain Prok-JAB PF14464.1 gi|284161685|ref|YP_003400308.1| - 3.9e-14 52.0 0.0 4.5e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|284161685|ref|YP_003400308.1| - 0.0076 15.9 0.0 0.11 12.1 0.0 2.1 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|284161685|ref|YP_003400308.1| - 0.079 12.6 0.2 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 RadC-like JAB domain tRNA_bind PF01588.15 gi|284161686|ref|YP_003400309.1| - 0.00052 19.8 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain P22_AR_C PF10548.4 gi|284161686|ref|YP_003400309.1| - 0.017 15.0 0.1 0.044 13.6 0.1 1.8 1 1 0 1 1 1 0 P22AR C-terminal domain DUF496 PF04363.7 gi|284161686|ref|YP_003400309.1| - 0.083 12.7 4.8 0.038 13.7 1.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF496) Rota_NSP3 PF01665.11 gi|284161686|ref|YP_003400309.1| - 0.12 11.3 1.9 0.19 10.6 1.3 1.5 1 1 0 1 1 1 0 Rotavirus non-structural protein NSP3 Nif11 PF07862.6 gi|284161686|ref|YP_003400309.1| - 0.33 10.9 3.2 1.5 8.7 0.3 2.6 3 0 0 3 3 3 0 Nitrogen fixation protein of unknown function Syntaxin-6_N PF09177.6 gi|284161686|ref|YP_003400309.1| - 0.38 11.1 2.7 6.3 7.2 0.3 2.9 1 1 1 2 2 2 0 Syntaxin 6, N-terminal U3_assoc_6 PF08640.6 gi|284161686|ref|YP_003400309.1| - 3.5 7.4 6.4 14 5.5 1.1 2.6 2 1 0 2 2 2 0 U3 small nucleolar RNA-associated protein 6 Pyridoxal_deC PF00282.14 gi|284161687|ref|YP_003400310.1| - 2.2e-39 134.9 0.0 3.2e-39 134.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_1_2 PF00155.16 gi|284161687|ref|YP_003400310.1| - 1.7e-13 50.2 0.0 2.4e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|284161687|ref|YP_003400310.1| - 1.7e-11 43.4 0.0 2.6e-08 33.0 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|284161687|ref|YP_003400310.1| - 2.2e-07 30.3 0.0 3.2e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase zinc_ribbon_4 PF13717.1 gi|284161687|ref|YP_003400310.1| - 0.053 13.2 0.2 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|284161687|ref|YP_003400310.1| - 0.081 12.5 0.1 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF211 PF02680.9 gi|284161688|ref|YP_003400311.1| - 3.3e-38 129.3 1.8 3.6e-38 129.2 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 FTCD_N PF07837.7 gi|284161688|ref|YP_003400311.1| - 0.085 12.3 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Formiminotransferase domain, N-terminal subdomain KaiC PF06745.8 gi|284161689|ref|YP_003400312.1| - 3.4e-55 186.6 1.4 4e-55 186.3 1.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|284161689|ref|YP_003400312.1| - 1e-12 47.8 0.0 1.4e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|284161689|ref|YP_003400312.1| - 3.8e-10 38.6 0.5 5.2e-10 38.2 0.4 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|284161689|ref|YP_003400312.1| - 3.7e-06 26.2 0.3 9.9e-06 24.8 0.2 1.7 1 1 0 1 1 1 1 recA bacterial DNA recombination protein ATP-synt_ab PF00006.20 gi|284161689|ref|YP_003400312.1| - 1.9e-05 24.3 0.1 3.9e-05 23.2 0.0 1.6 2 0 0 2 2 1 1 ATP synthase alpha/beta family, nucleotide-binding domain DUF2075 PF09848.4 gi|284161689|ref|YP_003400312.1| - 5.2e-05 22.3 0.0 6.9e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.10 gi|284161689|ref|YP_003400312.1| - 6.8e-05 21.8 0.1 0.018 13.9 0.0 2.1 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|284161689|ref|YP_003400312.1| - 0.00035 20.2 0.0 0.00072 19.2 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|284161689|ref|YP_003400312.1| - 0.00049 19.5 0.1 0.0011 18.3 0.0 1.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|284161689|ref|YP_003400312.1| - 0.00072 19.4 0.0 0.0018 18.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|284161689|ref|YP_003400312.1| - 0.0053 16.1 1.5 0.6 9.4 1.0 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Arch_ATPase PF01637.13 gi|284161689|ref|YP_003400312.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase PAXNEB PF05625.6 gi|284161689|ref|YP_003400312.1| - 0.02 13.7 1.7 0.19 10.5 0.1 2.0 1 1 0 2 2 2 0 PAXNEB protein TIP49 PF06068.8 gi|284161689|ref|YP_003400312.1| - 0.045 12.4 0.1 0.076 11.7 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus AAA_24 PF13479.1 gi|284161689|ref|YP_003400312.1| - 0.045 13.3 0.4 0.16 11.5 0.3 1.8 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|284161689|ref|YP_003400312.1| - 0.055 12.7 0.2 0.15 11.2 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein T2SE PF00437.15 gi|284161689|ref|YP_003400312.1| - 0.061 12.2 0.1 0.11 11.3 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MipZ PF09140.6 gi|284161689|ref|YP_003400312.1| - 0.063 12.3 0.0 0.082 11.9 0.0 1.3 1 1 0 1 1 1 0 ATPase MipZ AAA_10 PF12846.2 gi|284161689|ref|YP_003400312.1| - 0.065 12.6 0.0 0.07 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_35 PF14516.1 gi|284161689|ref|YP_003400312.1| - 0.095 11.3 0.0 0.18 10.4 0.0 1.4 2 0 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|284161689|ref|YP_003400312.1| - 0.096 12.3 0.0 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain ResIII PF04851.10 gi|284161689|ref|YP_003400312.1| - 0.097 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Nsp3_PL2pro PF12124.3 gi|284161689|ref|YP_003400312.1| - 0.1 12.2 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 Coronavirus polyprotein cleavage domain AAA_31 PF13614.1 gi|284161689|ref|YP_003400312.1| - 0.13 12.2 0.0 0.63 9.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain DUF835 PF05763.7 gi|284161690|ref|YP_003400313.1| - 9.6e-11 41.3 0.9 1.4e-10 40.8 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF257 PF03192.8 gi|284161690|ref|YP_003400313.1| - 5.2e-06 25.9 2.6 7.6e-05 22.1 1.8 2.2 1 1 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 KaiC PF06745.8 gi|284161691|ref|YP_003400314.1| - 3.1e-05 23.2 4.9 0.025 13.6 0.8 2.0 1 1 0 2 2 2 2 KaiC DUF835 PF05763.7 gi|284161691|ref|YP_003400314.1| - 0.00057 19.4 0.3 0.00057 19.4 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF835) DUF257 PF03192.8 gi|284161691|ref|YP_003400314.1| - 0.0053 16.0 0.4 0.0053 16.0 0.2 1.6 2 0 0 2 2 2 1 Pyrococcus protein of unknown function, DUF257 AIRS PF00586.19 gi|284161692|ref|YP_003400315.1| - 1.1e-20 73.6 0.0 1.9e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|284161692|ref|YP_003400315.1| - 2.2e-07 31.0 0.0 4.1e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain tRNA-synt_1b PF00579.20 gi|284161693|ref|YP_003400316.1| - 1.2e-40 139.4 0.0 4.3e-24 85.1 0.0 2.0 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|284161693|ref|YP_003400316.1| - 0.17 10.5 0.1 0.47 9.0 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) VitK2_biosynth PF02621.9 gi|284161694|ref|YP_003400317.1| - 6.4e-57 192.6 0.0 7.1e-57 192.4 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Phosphonate-bd PF12974.2 gi|284161694|ref|YP_003400317.1| - 0.082 12.2 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Radical_SAM PF04055.16 gi|284161695|ref|YP_003400318.1| - 1.9e-10 41.1 3.8 7.2e-10 39.2 2.7 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|284161695|ref|YP_003400318.1| - 3.6e-09 36.6 0.0 7.2e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|284161695|ref|YP_003400318.1| - 4.6e-09 36.5 0.2 9.2e-09 35.5 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain MFS_1 PF07690.11 gi|284161696|ref|YP_003400319.1| - 2.6e-42 144.7 49.9 1.2e-28 99.8 19.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|284161696|ref|YP_003400319.1| - 3e-13 49.1 31.6 1.7e-11 43.4 7.0 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|284161696|ref|YP_003400319.1| - 8.1e-06 24.2 15.8 0.0011 17.2 10.9 2.1 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|284161696|ref|YP_003400319.1| - 1.7e-05 23.4 6.2 1.7e-05 23.4 4.3 3.7 1 1 2 3 3 3 1 MFS/sugar transport protein PUCC PF03209.10 gi|284161696|ref|YP_003400319.1| - 0.00029 19.6 20.1 0.032 12.9 5.3 2.9 2 1 1 3 3 3 2 PUCC protein MFS_1_like PF12832.2 gi|284161696|ref|YP_003400319.1| - 0.0096 15.6 14.1 0.42 10.4 0.3 4.2 4 0 0 4 4 4 2 MFS_1 like family Nol1_Nop2_Fmu PF01189.12 gi|284161697|ref|YP_003400320.1| - 2.1e-49 168.4 0.0 2.6e-49 168.1 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family FtsJ PF01728.14 gi|284161697|ref|YP_003400320.1| - 8.3e-06 25.9 0.0 1.2e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|284161697|ref|YP_003400320.1| - 2.1e-05 24.1 0.0 3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|284161697|ref|YP_003400320.1| - 0.001 18.7 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|284161697|ref|YP_003400320.1| - 0.0055 16.7 0.0 0.0082 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|284161697|ref|YP_003400320.1| - 0.0083 15.6 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.13 gi|284161697|ref|YP_003400320.1| - 0.035 13.2 0.0 0.057 12.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MRL1 PF13003.2 gi|284161698|ref|YP_003400321.1| - 0.094 12.5 0.2 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L1 ABC_tran PF00005.22 gi|284161699|ref|YP_003400322.1| - 4.1e-30 104.8 1.1 1.5e-13 51.1 0.0 3.4 2 2 1 3 3 3 2 ABC transporter AAA_21 PF13304.1 gi|284161699|ref|YP_003400322.1| - 3.1e-24 86.4 6.0 3.5e-08 33.7 0.1 4.1 3 1 1 4 4 4 4 AAA domain AAA_15 PF13175.1 gi|284161699|ref|YP_003400322.1| - 1.7e-11 43.8 0.5 0.043 12.8 0.0 4.1 3 1 0 4 4 4 3 AAA ATPase domain AAA_16 PF13191.1 gi|284161699|ref|YP_003400322.1| - 1.8e-08 34.6 0.0 0.00046 20.2 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|284161699|ref|YP_003400322.1| - 4.9e-08 33.5 0.1 0.012 15.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|284161699|ref|YP_003400322.1| - 1e-07 31.3 0.1 0.0028 17.1 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|284161699|ref|YP_003400322.1| - 1.7e-07 30.7 2.3 0.56 9.3 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|284161699|ref|YP_003400322.1| - 2.6e-07 31.4 2.6 0.0032 18.2 0.0 2.7 2 1 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|284161699|ref|YP_003400322.1| - 1.8e-06 27.8 0.1 0.025 14.2 0.0 2.3 2 0 0 2 2 2 2 Archaeal ATPase MobB PF03205.9 gi|284161699|ref|YP_003400322.1| - 2.4e-06 27.3 0.7 0.017 14.8 0.1 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|284161699|ref|YP_003400322.1| - 3.4e-06 27.3 0.1 0.11 12.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|284161699|ref|YP_003400322.1| - 1e-05 25.4 0.1 0.1 12.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain Miro PF08477.8 gi|284161699|ref|YP_003400322.1| - 1.3e-05 25.6 0.0 0.15 12.5 0.0 2.4 2 0 0 2 2 2 2 Miro-like protein NACHT PF05729.7 gi|284161699|ref|YP_003400322.1| - 1.4e-05 24.8 0.1 0.11 12.2 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.1 gi|284161699|ref|YP_003400322.1| - 2.4e-05 24.4 0.3 0.065 13.3 0.1 2.5 2 1 0 2 2 2 2 AAA domain DUF3584 PF12128.3 gi|284161699|ref|YP_003400322.1| - 2.7e-05 21.7 0.2 0.014 12.7 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) NTPase_1 PF03266.10 gi|284161699|ref|YP_003400322.1| - 3.2e-05 23.6 0.4 0.12 12.0 0.0 2.6 2 0 0 2 2 2 2 NTPase NB-ARC PF00931.17 gi|284161699|ref|YP_003400322.1| - 5.3e-05 22.2 0.4 0.024 13.5 0.0 2.6 3 0 0 3 3 3 1 NB-ARC domain DUF258 PF03193.11 gi|284161699|ref|YP_003400322.1| - 6.2e-05 22.2 0.1 0.0093 15.1 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|284161699|ref|YP_003400322.1| - 0.00013 22.1 0.3 0.022 14.9 0.1 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|284161699|ref|YP_003400322.1| - 0.00014 21.7 0.9 0.11 12.3 0.1 2.5 2 1 0 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|284161699|ref|YP_003400322.1| - 0.00024 19.7 0.2 0.36 9.2 0.0 2.8 3 0 0 3 3 3 2 AAA domain SRP54 PF00448.17 gi|284161699|ref|YP_003400322.1| - 0.00025 20.5 2.1 0.087 12.2 0.1 2.7 3 0 0 3 3 3 2 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|284161699|ref|YP_003400322.1| - 0.00036 20.2 0.3 0.94 9.2 0.0 2.4 2 0 0 2 2 2 2 Part of AAA domain RNA_helicase PF00910.17 gi|284161699|ref|YP_003400322.1| - 0.00075 19.6 0.1 1.8 8.8 0.0 2.3 2 0 0 2 2 2 2 RNA helicase Rad17 PF03215.10 gi|284161699|ref|YP_003400322.1| - 0.001 17.8 0.3 0.011 14.3 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|284161699|ref|YP_003400322.1| - 0.0015 18.0 0.6 1.4 8.2 0.0 2.7 3 0 0 3 3 2 2 AAA-like domain AAA_25 PF13481.1 gi|284161699|ref|YP_003400322.1| - 0.0017 17.8 0.1 0.68 9.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|284161699|ref|YP_003400322.1| - 0.0023 17.4 1.6 0.37 10.2 0.1 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.1 gi|284161699|ref|YP_003400322.1| - 0.0023 17.8 0.0 0.13 12.1 0.0 2.8 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|284161699|ref|YP_003400322.1| - 0.0036 16.9 0.1 1.9 7.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|284161699|ref|YP_003400322.1| - 0.0049 16.0 0.1 0.52 9.4 0.0 2.5 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|284161699|ref|YP_003400322.1| - 0.0062 15.6 0.0 3.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin T2SE PF00437.15 gi|284161699|ref|YP_003400322.1| - 0.0072 15.2 0.1 1 8.1 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein PduV-EutP PF10662.4 gi|284161699|ref|YP_003400322.1| - 0.0083 15.6 1.5 1 8.8 0.1 2.6 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.9 gi|284161699|ref|YP_003400322.1| - 0.013 15.2 1.4 2.1 8.0 0.1 2.9 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|284161699|ref|YP_003400322.1| - 0.015 15.2 0.4 0.65 9.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|284161699|ref|YP_003400322.1| - 0.018 14.0 0.1 2.3 7.0 0.0 2.4 2 0 0 2 2 2 0 PIF1-like helicase ATP_bind_1 PF03029.12 gi|284161699|ref|YP_003400322.1| - 0.039 13.4 1.2 2.7 7.4 0.1 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein UPF0079 PF02367.12 gi|284161699|ref|YP_003400322.1| - 0.043 13.4 0.4 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Viral_helicase1 PF01443.13 gi|284161699|ref|YP_003400322.1| - 0.046 13.2 1.2 0.82 9.1 0.1 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Thymidylate_kin PF02223.12 gi|284161699|ref|YP_003400322.1| - 0.049 12.9 0.4 3.3 7.0 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase AAA_24 PF13479.1 gi|284161699|ref|YP_003400322.1| - 0.062 12.8 2.1 5.4 6.5 0.2 2.2 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|284161699|ref|YP_003400322.1| - 0.067 12.6 0.1 3 7.2 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|284161699|ref|YP_003400322.1| - 0.1 12.5 1.2 2.6 8.0 0.2 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|284161699|ref|YP_003400322.1| - 0.11 11.8 0.1 7 6.0 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family BioY PF02632.9 gi|284161700|ref|YP_003400323.1| - 3.1e-21 75.5 14.3 5.7e-21 74.7 9.9 1.4 1 1 0 1 1 1 1 BioY family Tom7 PF08038.7 gi|284161700|ref|YP_003400323.1| - 0.036 13.5 1.7 0.11 12.0 1.2 1.8 1 0 0 1 1 1 0 TOM7 family zf-DHHC PF01529.15 gi|284161700|ref|YP_003400323.1| - 3.6 6.9 10.7 2e+02 1.2 7.4 2.1 1 1 0 1 1 1 0 DHHC palmitoyltransferase GTP_EFTU PF00009.22 gi|284161701|ref|YP_003400324.1| - 3.1e-37 127.8 0.1 5.1e-37 127.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|284161701|ref|YP_003400324.1| - 8.6e-19 67.5 0.2 2.7e-18 65.9 0.2 1.9 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|284161701|ref|YP_003400324.1| - 3.8e-14 52.5 7.4 1.5e-13 50.6 1.0 2.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 AAA_4 PF04326.9 gi|284161701|ref|YP_003400324.1| - 1.8e-06 28.0 1.8 1.8e-06 28.0 1.2 2.2 2 0 0 2 2 2 1 Divergent AAA domain ATP_bind_1 PF03029.12 gi|284161701|ref|YP_003400324.1| - 0.0045 16.5 0.4 0.03 13.8 0.1 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Sec23_trunk PF04811.10 gi|284161701|ref|YP_003400324.1| - 0.039 13.3 0.0 0.073 12.4 0.0 1.4 1 0 0 1 1 1 0 Sec23/Sec24 trunk domain DUF552 PF04472.7 gi|284161701|ref|YP_003400324.1| - 0.58 10.1 6.2 13 5.8 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF552) DUF401 PF04165.7 gi|284161702|ref|YP_003400325.1| - 1.6e-86 290.8 34.1 1.7e-86 290.6 23.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) Osmo_MPGsynth PF09488.5 gi|284161703|ref|YP_003400326.1| - 1e-157 524.7 0.2 1.1e-157 524.5 0.2 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) Hydrolase_3 PF08282.7 gi|284161704|ref|YP_003400327.1| - 1.8e-13 50.6 0.0 8.3e-12 45.2 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284161704|ref|YP_003400327.1| - 6.2e-06 26.5 0.0 0.00041 20.5 0.0 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|284161704|ref|YP_003400327.1| - 0.00063 19.1 0.0 0.92 8.7 0.0 2.3 2 1 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|284161704|ref|YP_003400327.1| - 0.0032 17.9 0.0 0.028 14.8 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|284161704|ref|YP_003400327.1| - 0.02 14.7 0.0 0.043 13.7 0.0 1.7 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF4222 PF13973.1 gi|284161704|ref|YP_003400327.1| - 0.21 11.0 1.2 13 5.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4222) Glyco_hydro_38 PF01074.17 gi|284161705|ref|YP_003400328.1| - 3.5e-57 193.7 0.0 5.3e-57 193.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.8 gi|284161705|ref|YP_003400328.1| - 2.9e-55 187.8 0.8 6.2e-55 186.8 0.6 1.5 1 1 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.6 gi|284161705|ref|YP_003400328.1| - 2.6e-10 40.3 0.0 5.3e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 Alpha mannosidase, middle domain Glyco_hydro_57 PF03065.10 gi|284161705|ref|YP_003400328.1| - 0.0013 17.7 1.4 0.0022 16.9 0.1 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase family 57 Aminotran_3 PF00202.16 gi|284161706|ref|YP_003400329.1| - 2.3e-64 217.4 0.0 3.1e-64 216.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Porphobil_deam PF01379.15 gi|284161707|ref|YP_003400330.1| - 2.2e-72 242.4 0.1 2.8e-72 242.1 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|284161707|ref|YP_003400330.1| - 2.1e-06 27.7 0.6 4.7e-06 26.6 0.4 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain FIST_C PF10442.4 gi|284161707|ref|YP_003400330.1| - 0.015 15.2 0.1 0.046 13.6 0.1 1.8 1 1 0 1 1 1 0 FIST C domain TP_methylase PF00590.15 gi|284161708|ref|YP_003400331.1| - 1.4e-54 184.9 0.1 1.8e-54 184.6 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CW_binding_2 PF04122.7 gi|284161708|ref|YP_003400331.1| - 0.0033 17.5 0.0 0.77 10.0 0.0 2.5 2 1 0 2 2 2 2 Putative cell wall binding repeat 2 ApbA_C PF08546.6 gi|284161708|ref|YP_003400331.1| - 0.024 14.6 0.3 1.5 8.7 0.0 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal DUF3356 PF11836.3 gi|284161708|ref|YP_003400331.1| - 0.036 13.8 0.5 2.2 8.1 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3356) Radical_SAM PF04055.16 gi|284161708|ref|YP_003400331.1| - 0.048 13.8 0.1 0.13 12.4 0.0 1.9 1 1 0 1 1 1 0 Radical SAM superfamily DUF2153 PF09921.4 gi|284161708|ref|YP_003400331.1| - 0.17 11.5 0.6 0.48 10.0 0.2 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2153) Aldolase_II PF00596.16 gi|284161709|ref|YP_003400332.1| - 2.1e-34 118.7 0.0 2.4e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain PAPS_reduct PF01507.14 gi|284161710|ref|YP_003400333.1| - 4.2e-33 114.5 0.0 1e-32 113.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|284161710|ref|YP_003400333.1| - 1.7e-05 24.4 0.0 2.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|284161710|ref|YP_003400333.1| - 9.4e-05 21.7 0.0 0.00019 20.8 0.0 1.6 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|284161710|ref|YP_003400333.1| - 0.0025 17.2 1.7 0.0052 16.1 0.3 2.4 2 1 0 2 2 2 1 ATP-binding region Asn_synthase PF00733.16 gi|284161710|ref|YP_003400333.1| - 0.0029 17.1 0.0 0.0048 16.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|284161710|ref|YP_003400333.1| - 0.0053 15.6 0.0 0.0095 14.8 0.0 1.4 1 0 0 1 1 1 1 NAD synthase DUF2313 PF10076.4 gi|284161710|ref|YP_003400333.1| - 0.022 14.1 0.1 0.066 12.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2313) tRNA_Me_trans PF03054.11 gi|284161710|ref|YP_003400333.1| - 0.064 11.8 0.1 0.19 10.2 0.0 1.7 2 0 0 2 2 2 0 tRNA methyl transferase UPF0061 PF02696.9 gi|284161710|ref|YP_003400333.1| - 0.094 10.9 0.0 0.16 10.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized ACR, YdiU/UPF0061 family MMR_HSR1 PF01926.18 gi|284161711|ref|YP_003400334.1| - 1.9e-13 50.3 0.0 3.1e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|284161711|ref|YP_003400334.1| - 4e-12 45.6 0.1 1.6e-11 43.6 0.1 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|284161711|ref|YP_003400334.1| - 0.00016 21.1 0.0 0.016 14.6 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|284161711|ref|YP_003400334.1| - 0.0049 16.6 0.1 1 9.1 0.1 2.4 2 1 1 3 3 3 2 Dynamin family MobB PF03205.9 gi|284161711|ref|YP_003400334.1| - 0.0077 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|284161711|ref|YP_003400334.1| - 0.0083 15.3 0.1 0.03 13.4 0.1 1.9 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Septin PF00735.13 gi|284161711|ref|YP_003400334.1| - 0.017 14.1 0.3 0.37 9.7 0.2 2.2 1 1 0 1 1 1 0 Septin AAA_18 PF13238.1 gi|284161711|ref|YP_003400334.1| - 0.048 13.9 0.0 0.5 10.6 0.0 2.1 1 1 1 2 2 2 0 AAA domain Miro PF08477.8 gi|284161711|ref|YP_003400334.1| - 0.059 13.8 0.0 0.1 13.0 0.0 1.5 1 1 0 1 1 1 0 Miro-like protein ArgK PF03308.11 gi|284161711|ref|YP_003400334.1| - 0.12 11.1 0.3 6.2 5.5 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Sec61_beta PF03911.11 gi|284161712|ref|YP_003400335.1| - 2.4e-09 36.8 0.1 3.2e-09 36.4 0.1 1.2 1 0 0 1 1 1 1 Sec61beta family DUF99 PF01949.11 gi|284161713|ref|YP_003400336.1| - 3.7e-59 198.9 0.1 4.1e-59 198.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 AzlD PF05437.7 gi|284161714|ref|YP_003400337.1| - 1.8e-16 59.8 2.3 2.1e-16 59.6 1.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) DUF2910 PF11139.3 gi|284161714|ref|YP_003400337.1| - 0.0015 17.7 0.4 0.0018 17.4 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2910) ABC_membrane_2 PF06472.10 gi|284161714|ref|YP_003400337.1| - 0.97 8.4 3.9 1.2 8.1 0.1 2.0 2 0 0 2 2 2 0 ABC transporter transmembrane region 2 AzlC PF03591.9 gi|284161715|ref|YP_003400338.1| - 3.2e-30 104.9 6.4 3.2e-30 104.9 4.4 1.7 2 0 0 2 2 2 1 AzlC protein MerC PF03203.9 gi|284161715|ref|YP_003400338.1| - 0.74 10.2 9.6 13 6.2 5.5 2.7 1 1 0 1 1 1 0 MerC mercury resistance protein GerA PF03323.8 gi|284161715|ref|YP_003400338.1| - 2.9 5.9 5.3 3.9 5.5 3.7 1.1 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein SHS2_Rpb7-N PF03876.12 gi|284161716|ref|YP_003400339.1| - 2.4e-18 66.0 0.0 4.7e-18 65.0 0.0 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|284161716|ref|YP_003400339.1| - 9.9e-13 47.9 0.4 9.9e-13 47.9 0.3 1.8 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|284161716|ref|YP_003400339.1| - 0.0052 16.9 0.0 0.009 16.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 SAF PF08666.7 gi|284161716|ref|YP_003400339.1| - 0.021 15.2 0.1 0.46 10.9 0.0 2.6 3 0 0 3 3 3 0 SAF domain S1_2 PF13509.1 gi|284161716|ref|YP_003400339.1| - 0.057 13.3 0.0 0.19 11.6 0.0 1.9 1 1 1 2 2 2 0 S1 domain Spt4 PF06093.8 gi|284161717|ref|YP_003400340.1| - 2.1e-15 56.3 0.2 2.4e-15 56.1 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger GATA PF00320.22 gi|284161717|ref|YP_003400340.1| - 0.072 12.4 0.3 0.072 12.4 0.2 1.6 2 0 0 2 2 2 0 GATA zinc finger TF_Zn_Ribbon PF08271.7 gi|284161717|ref|YP_003400340.1| - 0.14 11.4 2.9 0.23 10.8 0.3 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding Fer4 PF00037.22 gi|284161717|ref|YP_003400340.1| - 0.25 11.0 0.5 0.25 11.0 0.3 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain zf-ribbon_3 PF13248.1 gi|284161717|ref|YP_003400340.1| - 0.25 10.5 2.2 0.68 9.2 1.7 1.6 1 1 1 2 2 2 0 zinc-ribbon domain DUF359 PF04019.7 gi|284161718|ref|YP_003400341.1| - 1.4e-30 105.1 0.2 1.8e-30 104.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.14 gi|284161719|ref|YP_003400342.1| - 3.7e-20 71.4 0.0 5e-20 71.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|284161720|ref|YP_003400343.1| - 2e-21 75.5 7.6 2.4e-21 75.2 5.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.2 gi|284161720|ref|YP_003400343.1| - 0.00016 21.4 1.5 0.00019 21.1 1.0 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284161720|ref|YP_003400343.1| - 0.00034 19.7 13.6 0.0039 16.3 4.1 2.0 1 1 1 2 2 2 2 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|284161720|ref|YP_003400343.1| - 0.00053 19.7 2.4 0.0007 19.3 1.7 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e IBR PF01485.16 gi|284161720|ref|YP_003400343.1| - 0.002 17.9 1.7 0.0022 17.7 1.2 1.2 1 0 0 1 1 1 1 IBR domain RNA_POL_M_15KD PF02150.11 gi|284161720|ref|YP_003400343.1| - 0.0026 17.3 2.1 0.0061 16.2 1.5 1.6 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit GFA PF04828.9 gi|284161720|ref|YP_003400343.1| - 0.0036 17.2 3.3 0.0057 16.5 0.1 1.9 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_2 PF13240.1 gi|284161720|ref|YP_003400343.1| - 0.006 16.0 5.4 0.11 12.0 0.4 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|284161720|ref|YP_003400343.1| - 0.0064 16.1 8.1 0.04 13.5 5.0 2.2 1 1 0 1 1 1 1 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|284161720|ref|YP_003400343.1| - 0.0087 15.4 2.2 0.1 12.0 1.4 2.2 1 1 1 2 2 2 1 A2L zinc ribbon domain zf-NADH-PPase PF09297.6 gi|284161720|ref|YP_003400343.1| - 0.017 14.6 7.5 0.1 12.1 5.2 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain C1_1 PF00130.17 gi|284161720|ref|YP_003400343.1| - 0.037 13.7 0.7 0.053 13.2 0.5 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.14 gi|284161720|ref|YP_003400343.1| - 0.057 13.0 1.4 0.063 12.9 1.0 1.2 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1936 PF09151.5 gi|284161720|ref|YP_003400343.1| - 0.072 12.6 3.4 0.27 10.7 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) Zn_Tnp_IS1595 PF12760.2 gi|284161720|ref|YP_003400343.1| - 0.081 12.7 6.3 0.15 11.8 3.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2082 PF09855.4 gi|284161720|ref|YP_003400343.1| - 0.093 12.5 4.3 0.27 11.0 0.6 2.4 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Stig1 PF04885.8 gi|284161720|ref|YP_003400343.1| - 0.1 12.7 2.3 0.11 12.7 1.6 1.2 1 0 0 1 1 1 0 Stigma-specific protein, Stig1 ADK_lid PF05191.9 gi|284161720|ref|YP_003400343.1| - 0.11 12.2 4.1 3.1 7.5 0.9 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid NCD3G PF07562.9 gi|284161720|ref|YP_003400343.1| - 0.11 12.1 0.5 0.12 12.0 0.4 1.3 1 1 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR GCC2_GCC3 PF07699.8 gi|284161720|ref|YP_003400343.1| - 0.17 11.4 2.9 0.23 11.0 2.0 1.4 1 1 0 1 1 1 0 GCC2 and GCC3 zf-dskA_traR PF01258.12 gi|284161720|ref|YP_003400343.1| - 0.2 11.3 0.0 0.2 11.3 0.0 2.5 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger NOB1_Zn_bind PF08772.6 gi|284161720|ref|YP_003400343.1| - 0.28 11.0 7.6 0.13 12.0 0.7 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF1451 PF07295.6 gi|284161720|ref|YP_003400343.1| - 0.28 10.9 2.0 0.27 10.9 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) OrfB_Zn_ribbon PF07282.6 gi|284161720|ref|YP_003400343.1| - 0.34 10.6 3.3 0.45 10.2 2.3 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Rpr2 PF04032.11 gi|284161720|ref|YP_003400343.1| - 0.35 10.7 4.8 0.45 10.4 0.2 2.0 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-RING_3 PF14369.1 gi|284161720|ref|YP_003400343.1| - 0.67 9.9 2.7 0.97 9.4 0.2 1.9 1 1 1 2 2 2 0 zinc-finger DUF2387 PF09526.5 gi|284161720|ref|YP_003400343.1| - 0.81 9.6 4.2 0.53 10.2 1.4 1.9 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|284161720|ref|YP_003400343.1| - 1 8.8 6.3 2.7 7.5 2.2 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|284161720|ref|YP_003400343.1| - 1.2 9.1 5.3 6.1 6.8 0.5 2.2 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|284161720|ref|YP_003400343.1| - 1.7 8.0 5.8 1.4 8.2 2.9 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|284161720|ref|YP_003400343.1| - 2 8.2 4.4 21 4.9 3.2 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0547 PF10571.4 gi|284161720|ref|YP_003400343.1| - 9.3 6.0 8.9 1.6 8.4 0.8 2.3 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Peptidase_M22 PF00814.20 gi|284161721|ref|YP_003400344.1| - 1.5e-90 303.3 0.0 1.8e-90 303.0 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family RNA_ligase PF09414.5 gi|284161722|ref|YP_003400345.1| - 0.026 14.2 0.5 0.054 13.2 0.0 1.6 2 0 0 2 2 2 0 RNA ligase ThiF PF00899.16 gi|284161723|ref|YP_003400346.1| - 2.2e-34 118.2 1.0 3e-34 117.7 0.7 1.2 1 0 0 1 1 1 1 ThiF family Saccharop_dh PF03435.13 gi|284161723|ref|YP_003400346.1| - 4.5e-05 22.6 1.1 0.00015 20.8 0.7 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase MoeZ_MoeB PF05237.8 gi|284161723|ref|YP_003400346.1| - 0.0001 21.8 0.3 0.00064 19.2 0.2 2.1 1 1 0 1 1 1 1 MoeZ/MoeB domain TrkA_N PF02254.13 gi|284161723|ref|YP_003400346.1| - 0.00017 21.5 2.8 0.00084 19.3 0.2 2.2 1 1 0 2 2 2 1 TrkA-N domain IlvN PF07991.7 gi|284161723|ref|YP_003400346.1| - 0.0067 15.8 0.3 3.2 7.0 0.0 3.0 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|284161723|ref|YP_003400346.1| - 0.0072 16.5 0.2 0.013 15.7 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding PTS_IIB PF02302.12 gi|284161723|ref|YP_003400346.1| - 0.0092 16.4 0.2 0.018 15.4 0.1 1.4 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit UDPG_MGDP_dh_N PF03721.9 gi|284161723|ref|YP_003400346.1| - 0.011 15.0 1.8 0.035 13.5 1.2 1.8 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.15 gi|284161723|ref|YP_003400346.1| - 0.026 14.4 1.2 0.099 12.5 0.8 1.9 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|284161723|ref|YP_003400346.1| - 0.029 13.5 0.2 0.1 11.7 0.0 1.8 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|284161723|ref|YP_003400346.1| - 0.08 12.0 0.8 0.3 10.1 0.2 1.9 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.15 gi|284161723|ref|YP_003400346.1| - 0.61 10.1 5.0 5 7.2 0.2 2.6 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase Prok-JAB PF14464.1 gi|284161725|ref|YP_003400348.1| - 8.2e-09 34.9 0.0 1.1e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|284161725|ref|YP_003400348.1| - 0.0014 18.3 0.0 0.0064 16.2 0.0 1.9 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease DUF1049 PF06305.6 gi|284161728|ref|YP_003400351.1| - 0.018 14.5 0.0 0.019 14.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) DUF1656 PF07869.7 gi|284161728|ref|YP_003400351.1| - 0.14 11.9 2.6 0.17 11.6 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1656) NADH_dh_m_C1 PF15088.1 gi|284161730|ref|YP_003400353.1| - 0.0025 17.2 0.1 0.011 15.1 0.0 1.9 2 0 0 2 2 2 1 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial Sterol_MT_C PF08498.5 gi|284161733|ref|YP_003400356.1| - 0.0032 17.3 0.0 0.0054 16.6 0.0 1.4 1 0 0 1 1 1 1 Sterol methyltransferase C-terminal Baculo_PEP_C PF04513.7 gi|284161734|ref|YP_003400357.1| - 0.0064 16.3 6.4 0.012 15.4 4.4 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus TFIIE_alpha PF02002.12 gi|284161735|ref|YP_003400358.1| - 1.3e-05 24.6 0.1 1.4e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|284161735|ref|YP_003400358.1| - 4.7e-05 23.0 0.0 5e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284161735|ref|YP_003400358.1| - 0.00081 19.0 0.0 0.00091 18.8 0.0 1.1 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|284161735|ref|YP_003400358.1| - 0.0012 18.7 0.0 0.0012 18.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.16 gi|284161735|ref|YP_003400358.1| - 0.0041 16.5 0.0 0.0056 16.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|284161735|ref|YP_003400358.1| - 0.0046 17.0 0.0 0.0053 16.8 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|284161735|ref|YP_003400358.1| - 0.0072 16.2 0.0 0.0086 15.9 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.1 gi|284161735|ref|YP_003400358.1| - 0.0083 16.2 0.0 0.0094 16.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix GerE PF00196.14 gi|284161735|ref|YP_003400358.1| - 0.0085 15.3 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|284161735|ref|YP_003400358.1| - 0.01 15.1 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SIMPL PF04402.9 gi|284161735|ref|YP_003400358.1| - 0.013 15.3 0.1 0.013 15.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF541) Phage_rep_org_N PF09681.5 gi|284161735|ref|YP_003400358.1| - 0.015 14.8 0.1 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_27 PF13463.1 gi|284161735|ref|YP_003400358.1| - 0.031 14.5 0.0 0.036 14.3 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|284161735|ref|YP_003400358.1| - 0.05 13.6 0.0 0.065 13.2 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|284161735|ref|YP_003400358.1| - 0.071 12.8 0.0 0.087 12.5 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.15 gi|284161735|ref|YP_003400358.1| - 0.078 12.6 0.0 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r3 PF04539.11 gi|284161735|ref|YP_003400358.1| - 0.086 12.7 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Sigma-70 region 3 FaeA PF04703.7 gi|284161735|ref|YP_003400358.1| - 0.094 12.8 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein HrcA_DNA-bdg PF03444.10 gi|284161735|ref|YP_003400358.1| - 0.14 11.6 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Pyr_redox_2 PF07992.9 gi|284161736|ref|YP_003400359.1| - 9.8e-36 123.5 2.5 9.3e-20 71.3 0.0 3.9 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|284161736|ref|YP_003400359.1| - 3.2e-26 91.5 10.3 4.1e-21 75.1 1.0 4.0 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|284161736|ref|YP_003400359.1| - 2e-21 76.0 0.1 8.2e-21 74.1 0.0 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|284161736|ref|YP_003400359.1| - 1.9e-14 53.3 3.5 0.0022 16.9 0.0 4.2 4 0 0 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|284161736|ref|YP_003400359.1| - 1e-13 51.7 0.0 4e-06 27.0 0.0 3.4 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Rhodanese PF00581.15 gi|284161736|ref|YP_003400359.1| - 3.7e-12 46.6 0.0 8.5e-12 45.4 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain HI0933_like PF03486.9 gi|284161736|ref|YP_003400359.1| - 3.9e-10 38.7 2.4 0.008 14.6 0.0 4.1 4 0 0 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.1 gi|284161736|ref|YP_003400359.1| - 1.9e-09 37.4 0.9 0.00069 19.5 0.1 3.2 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|284161736|ref|YP_003400359.1| - 1e-07 31.1 3.0 0.0044 15.9 0.1 3.9 5 0 0 5 5 5 2 FAD binding domain NAD_binding_9 PF13454.1 gi|284161736|ref|YP_003400359.1| - 4.9e-07 29.6 2.8 0.22 11.2 0.0 4.3 4 0 0 4 4 4 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|284161736|ref|YP_003400359.1| - 1.2e-06 27.7 3.5 0.0013 17.7 0.0 3.1 3 0 0 3 3 3 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|284161736|ref|YP_003400359.1| - 7.4e-06 24.8 1.3 0.23 10.0 0.0 3.4 3 0 0 3 3 3 2 Tryptophan halogenase GIDA PF01134.17 gi|284161736|ref|YP_003400359.1| - 0.00037 19.4 11.3 0.4 9.4 0.4 4.0 2 2 1 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|284161736|ref|YP_003400359.1| - 0.00038 19.6 4.0 1.1 8.2 0.1 3.2 3 0 0 3 3 3 2 Thi4 family FAD_oxidored PF12831.2 gi|284161736|ref|YP_003400359.1| - 0.00039 19.6 5.3 0.081 11.9 0.1 3.5 4 0 0 4 4 4 2 FAD dependent oxidoreductase TrkA_N PF02254.13 gi|284161736|ref|YP_003400359.1| - 0.00041 20.3 2.9 0.21 11.6 0.1 3.4 4 0 0 4 4 4 2 TrkA-N domain DUF1188 PF06690.6 gi|284161736|ref|YP_003400359.1| - 0.0013 17.9 0.1 0.008 15.3 0.0 2.2 3 0 0 3 3 3 1 Protein of unknown function (DUF1188) AlaDh_PNT_C PF01262.16 gi|284161736|ref|YP_003400359.1| - 0.0014 18.2 0.1 0.72 9.3 0.0 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|284161736|ref|YP_003400359.1| - 0.0017 18.5 0.8 1.4 9.2 0.0 2.9 2 1 0 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|284161736|ref|YP_003400359.1| - 0.0044 16.6 1.0 0.06 13.0 0.1 2.7 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GMC_oxred_N PF00732.14 gi|284161736|ref|YP_003400359.1| - 0.024 13.8 1.4 4.8 6.2 0.0 3.6 4 0 0 4 4 4 0 GMC oxidoreductase FAD_binding_3 PF01494.14 gi|284161736|ref|YP_003400359.1| - 0.026 13.6 2.0 0.18 10.8 0.1 2.6 3 0 0 3 3 3 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|284161736|ref|YP_003400359.1| - 0.059 12.5 0.2 2.8 7.0 0.0 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|284161736|ref|YP_003400359.1| - 0.093 11.7 0.3 0.77 8.7 0.0 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|284161736|ref|YP_003400359.1| - 0.14 11.4 1.7 0.91 8.8 0.3 2.5 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.18 gi|284161737|ref|YP_003400360.1| - 1.2e-40 138.6 0.2 2.2e-40 137.7 0.2 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|284161737|ref|YP_003400360.1| - 2.8e-24 85.7 0.1 4.2e-23 81.9 0.0 2.5 2 1 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|284161737|ref|YP_003400360.1| - 0.097 12.0 1.4 0.77 9.1 1.0 2.2 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FIST PF08495.5 gi|284161738|ref|YP_003400361.1| - 1.2e-15 57.1 0.2 3.3e-14 52.5 0.0 2.4 2 1 0 2 2 2 1 FIST N domain FIST_C PF10442.4 gi|284161738|ref|YP_003400361.1| - 1e-12 48.1 0.0 1.7e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 FIST C domain HATPase_c PF02518.21 gi|284161739|ref|YP_003400362.1| - 5.6e-28 96.8 0.2 1.8e-27 95.2 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|284161739|ref|YP_003400362.1| - 7.8e-20 71.1 0.0 1.4e-14 54.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|284161739|ref|YP_003400362.1| - 2.3e-16 59.6 0.0 3.8e-09 36.3 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|284161739|ref|YP_003400362.1| - 9.9e-15 53.7 0.0 1.9e-07 30.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|284161739|ref|YP_003400362.1| - 7.2e-10 38.8 0.1 0.00015 21.8 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|284161739|ref|YP_003400362.1| - 1.8e-07 31.1 1.3 6.2e-07 29.4 0.1 2.5 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|284161739|ref|YP_003400362.1| - 2.6e-06 27.2 0.1 5.6e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|284161739|ref|YP_003400362.1| - 0.0011 18.4 0.5 0.0047 16.4 0.1 2.2 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|284161739|ref|YP_003400362.1| - 0.0083 15.7 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|284161739|ref|YP_003400362.1| - 0.016 14.8 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 GHKL domain HisKA PF00512.20 gi|284161739|ref|YP_003400362.1| - 0.09 12.7 1.5 0.18 11.8 0.1 2.3 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Fer4 PF00037.22 gi|284161740|ref|YP_003400363.1| - 1.2e-07 30.9 21.0 0.00025 20.5 5.8 3.1 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284161740|ref|YP_003400363.1| - 1.4e-06 27.9 14.4 2e-06 27.4 10.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284161740|ref|YP_003400363.1| - 1.8e-06 27.5 15.9 0.00052 19.7 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284161740|ref|YP_003400363.1| - 8.1e-05 22.8 17.6 0.00012 22.3 12.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284161740|ref|YP_003400363.1| - 0.0032 17.8 18.7 0.11 12.8 13.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284161740|ref|YP_003400363.1| - 0.0058 16.4 17.3 0.021 14.6 12.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284161740|ref|YP_003400363.1| - 0.0085 16.3 23.1 0.076 13.3 5.6 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284161740|ref|YP_003400363.1| - 0.018 15.3 15.0 0.051 13.9 0.9 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284161740|ref|YP_003400363.1| - 0.025 14.4 20.6 0.28 11.1 3.1 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|284161740|ref|YP_003400363.1| - 0.055 14.0 0.9 0.055 14.0 0.6 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|284161740|ref|YP_003400363.1| - 0.48 10.5 19.4 55 3.9 6.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161740|ref|YP_003400363.1| - 0.91 10.3 16.3 0.56 10.9 0.7 2.1 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|284161740|ref|YP_003400363.1| - 3.8 8.2 19.4 6.7 7.5 6.9 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain ComX PF05952.7 gi|284161741|ref|YP_003400364.1| - 0.025 14.1 0.1 0.062 12.8 0.0 1.8 2 0 0 2 2 2 0 Bacillus competence pheromone ComX CZB PF13682.1 gi|284161741|ref|YP_003400364.1| - 0.084 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Chemoreceptor zinc-binding domain LcrV PF04792.7 gi|284161741|ref|YP_003400364.1| - 0.11 11.5 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 V antigen (LcrV) protein HEAT_EZ PF13513.1 gi|284161741|ref|YP_003400364.1| - 0.11 12.9 0.0 0.66 10.5 0.0 2.2 2 1 1 3 3 3 0 HEAT-like repeat HhH-GPD PF00730.20 gi|284161742|ref|YP_003400365.1| - 1.1e-05 25.7 0.1 1.7e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HTH_AsnC-type PF13404.1 gi|284161743|ref|YP_003400366.1| - 1.1e-15 56.8 1.0 4.6e-15 54.8 0.2 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|284161743|ref|YP_003400366.1| - 9.7e-15 53.6 0.5 1.6e-14 52.9 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|284161743|ref|YP_003400366.1| - 1.1e-14 53.8 0.1 2e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|284161743|ref|YP_003400366.1| - 8.3e-09 34.9 1.3 1.2e-08 34.5 0.3 1.7 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.6 gi|284161743|ref|YP_003400366.1| - 2.8e-05 23.8 0.0 4.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.1 gi|284161743|ref|YP_003400366.1| - 3.1e-05 23.4 0.5 7.5e-05 22.2 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_DeoR PF08220.7 gi|284161743|ref|YP_003400366.1| - 0.00057 19.3 0.1 0.001 18.5 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|284161743|ref|YP_003400366.1| - 0.0019 18.1 0.1 0.0042 17.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284161743|ref|YP_003400366.1| - 0.0059 16.2 0.1 0.012 15.2 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|284161743|ref|YP_003400366.1| - 0.007 16.2 0.1 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|284161743|ref|YP_003400366.1| - 0.0072 16.3 0.0 0.014 15.3 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|284161743|ref|YP_003400366.1| - 0.0089 15.4 0.1 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_8 PF02954.14 gi|284161743|ref|YP_003400366.1| - 0.0091 15.5 0.2 0.014 14.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family ACT_4 PF13291.1 gi|284161743|ref|YP_003400366.1| - 0.011 16.0 0.0 0.019 15.2 0.0 1.6 1 0 0 1 1 1 0 ACT domain TFIIE_alpha PF02002.12 gi|284161743|ref|YP_003400366.1| - 0.011 15.2 0.2 0.024 14.1 0.1 1.6 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_1 PF00126.22 gi|284161743|ref|YP_003400366.1| - 0.016 14.9 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4_2 PF08281.7 gi|284161743|ref|YP_003400366.1| - 0.018 14.4 0.1 0.045 13.2 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_CodY PF08222.6 gi|284161743|ref|YP_003400366.1| - 0.019 14.2 0.2 0.032 13.5 0.2 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain MarR_2 PF12802.2 gi|284161743|ref|YP_003400366.1| - 0.031 13.9 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_30 PF13556.1 gi|284161743|ref|YP_003400366.1| - 0.034 13.7 0.3 0.23 11.0 0.0 2.4 4 0 0 4 4 3 0 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.2 gi|284161743|ref|YP_003400366.1| - 0.035 13.9 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284161743|ref|YP_003400366.1| - 0.058 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FaeA PF04703.7 gi|284161743|ref|YP_003400366.1| - 0.11 12.6 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein MarR PF01047.17 gi|284161743|ref|YP_003400366.1| - 0.13 11.9 0.1 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family AhpC-TSA PF00578.16 gi|284161744|ref|YP_003400367.1| - 1.3e-33 115.2 0.0 1.7e-33 114.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|284161744|ref|YP_003400367.1| - 4.8e-14 52.1 0.0 6.5e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|284161744|ref|YP_003400367.1| - 5.2e-14 51.6 0.2 9.5e-14 50.7 0.1 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Rubrerythrin PF02915.12 gi|284161745|ref|YP_003400368.1| - 1.7e-22 80.2 10.3 2e-22 79.9 7.2 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|284161745|ref|YP_003400368.1| - 7.9e-10 38.6 4.1 1.5e-06 28.0 0.3 2.0 1 1 1 2 2 2 2 Ferritin-like domain HypA PF01155.14 gi|284161745|ref|YP_003400368.1| - 0.0013 18.4 0.1 0.0024 17.5 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family COQ7 PF03232.8 gi|284161745|ref|YP_003400368.1| - 0.0017 17.8 0.9 1.4 8.3 0.1 2.1 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 DUF2383 PF09537.5 gi|284161745|ref|YP_003400368.1| - 0.0093 16.1 1.5 2.5 8.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) zf-NADH-PPase PF09297.6 gi|284161745|ref|YP_003400368.1| - 0.018 14.5 0.9 0.07 12.6 0.2 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Haem_oxygenas_2 PF14518.1 gi|284161745|ref|YP_003400368.1| - 0.027 14.6 0.1 0.084 13.0 0.0 1.9 1 1 1 2 2 2 0 Iron-containing redox enzyme zf-UBP PF02148.14 gi|284161745|ref|YP_003400368.1| - 0.029 14.4 0.3 0.061 13.4 0.2 1.5 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein DUF3279 PF11682.3 gi|284161745|ref|YP_003400368.1| - 0.034 13.7 0.3 0.054 13.0 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) zinc_ribbon_2 PF13240.1 gi|284161745|ref|YP_003400368.1| - 0.045 13.2 1.2 0.18 11.3 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF922 PF06037.6 gi|284161745|ref|YP_003400368.1| - 0.074 12.3 1.0 1.8 7.8 0.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF922) DUF3231 PF11553.3 gi|284161745|ref|YP_003400368.1| - 0.099 12.1 1.8 2.3 7.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3231) zf-ribbon_3 PF13248.1 gi|284161745|ref|YP_003400368.1| - 0.14 11.3 4.4 0.13 11.4 1.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284161745|ref|YP_003400368.1| - 0.18 11.4 0.6 0.48 10.1 0.4 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|284161745|ref|YP_003400368.1| - 0.2 11.5 5.0 5.8 6.8 3.5 2.5 1 1 0 1 1 1 0 Rubredoxin Ferritin_2 PF13668.1 gi|284161745|ref|YP_003400368.1| - 0.2 11.5 2.7 1.4 8.8 1.8 2.0 1 1 0 1 1 1 0 Ferritin-like domain USP7_C2 PF14533.1 gi|284161745|ref|YP_003400368.1| - 0.32 10.3 4.4 1.1 8.7 3.1 1.8 1 1 0 1 1 1 0 Ubiquitin-specific protease C-terminal UPF0547 PF10571.4 gi|284161745|ref|YP_003400368.1| - 2.7 7.7 7.7 0.39 10.4 0.5 2.6 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Rubrerythrin PF02915.12 gi|284161746|ref|YP_003400369.1| - 8.5e-34 116.8 10.1 1e-33 116.5 7.0 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|284161746|ref|YP_003400369.1| - 4.1e-09 36.3 3.5 4.9e-09 36.0 2.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain HypA PF01155.14 gi|284161746|ref|YP_003400369.1| - 0.005 16.5 0.9 0.013 15.1 0.6 1.9 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|284161746|ref|YP_003400369.1| - 0.0082 15.7 2.2 0.059 13.0 0.1 2.4 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) zf-UBP PF02148.14 gi|284161746|ref|YP_003400369.1| - 0.0098 15.9 0.2 0.024 14.7 0.1 1.7 1 0 0 1 1 1 1 Zn-finger in ubiquitin-hydrolases and other protein A2L_zn_ribbon PF08792.5 gi|284161746|ref|YP_003400369.1| - 0.035 13.5 0.1 3.3 7.2 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF2383 PF09537.5 gi|284161746|ref|YP_003400369.1| - 0.044 14.0 2.4 0.87 9.8 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) DUF3952 PF13130.1 gi|284161746|ref|YP_003400369.1| - 0.054 13.4 0.5 2.6 8.0 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3952) TF_Zn_Ribbon PF08271.7 gi|284161746|ref|YP_003400369.1| - 0.079 12.3 2.3 5.5 6.3 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|284161746|ref|YP_003400369.1| - 0.11 12.2 1.6 9.4 6.0 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal tRNA-synt_1g PF09334.6 gi|284161746|ref|YP_003400369.1| - 0.12 11.0 0.6 0.33 9.5 0.1 1.8 1 1 1 2 2 2 0 tRNA synthetases class I (M) zf-C2HC5 PF06221.8 gi|284161746|ref|YP_003400369.1| - 0.12 12.1 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.1 gi|284161746|ref|YP_003400369.1| - 0.2 10.8 5.5 2.4 7.4 3.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF2296 PF10058.4 gi|284161746|ref|YP_003400369.1| - 0.31 10.8 2.3 0.85 9.4 0.0 2.5 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|284161746|ref|YP_003400369.1| - 0.42 10.5 3.7 1.4 8.9 2.5 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|284161746|ref|YP_003400369.1| - 1.6 8.7 5.4 21 5.0 0.3 2.6 1 1 1 2 2 2 0 Rubredoxin Ferritin_2 PF13668.1 gi|284161746|ref|YP_003400369.1| - 4.1 7.3 6.3 2.5 8.0 2.0 1.9 1 1 1 2 2 2 0 Ferritin-like domain UPF0547 PF10571.4 gi|284161746|ref|YP_003400369.1| - 8.4 6.1 7.9 12 5.7 1.3 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|284161747|ref|YP_003400370.1| - 9.2e-21 73.4 10.9 1e-20 73.2 7.6 1.0 1 0 0 1 1 1 1 Rubredoxin DUF4379 PF14311.1 gi|284161747|ref|YP_003400370.1| - 0.0029 17.3 6.2 0.0034 17.1 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4379) ADK_lid PF05191.9 gi|284161747|ref|YP_003400370.1| - 0.024 14.2 1.3 0.047 13.3 0.9 1.5 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-Sec23_Sec24 PF04810.10 gi|284161747|ref|YP_003400370.1| - 0.047 13.2 4.3 0.33 10.5 0.1 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger OrfB_Zn_ribbon PF07282.6 gi|284161747|ref|YP_003400370.1| - 0.08 12.6 2.5 2 8.1 0.2 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|284161747|ref|YP_003400370.1| - 0.096 12.0 6.0 1.1 8.5 0.8 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|284161747|ref|YP_003400370.1| - 0.21 11.1 4.8 0.63 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284161747|ref|YP_003400370.1| - 0.34 10.1 6.1 2.8 7.2 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284161747|ref|YP_003400370.1| - 0.46 10.3 6.6 1.8 8.4 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-MIZ PF02891.15 gi|284161747|ref|YP_003400370.1| - 1.5 8.3 6.5 1.6 8.3 0.3 2.1 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger zf-RanBP PF00641.13 gi|284161747|ref|YP_003400370.1| - 4.4 6.4 13.0 1.3 8.2 1.9 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Desulfoferrodox PF01880.13 gi|284161748|ref|YP_003400371.1| - 2.8e-25 88.4 0.2 3.4e-25 88.1 0.2 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.1 gi|284161748|ref|YP_003400371.1| - 1.3e-05 25.2 0.0 1.7e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY DUF3598 PF12204.3 gi|284161748|ref|YP_003400371.1| - 0.073 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3598) Lactamase_B PF00753.22 gi|284161749|ref|YP_003400372.1| - 1.1e-23 83.8 0.0 1.8e-23 83.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|284161749|ref|YP_003400372.1| - 2.1e-08 34.2 0.0 3.2e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|284161749|ref|YP_003400372.1| - 5.6e-08 32.5 0.1 1.9e-07 30.8 0.0 1.8 1 1 0 2 2 2 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.2 gi|284161749|ref|YP_003400372.1| - 0.0091 15.9 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain PGM_PMM_I PF02878.11 gi|284161749|ref|YP_003400372.1| - 0.15 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KH_4 PF13083.1 gi|284161750|ref|YP_003400373.1| - 0.0038 16.8 0.9 0.26 10.9 0.1 2.1 1 1 1 2 2 2 2 KH domain G2F PF07474.7 gi|284161750|ref|YP_003400373.1| - 0.033 13.5 0.0 0.037 13.4 0.0 1.1 1 0 0 1 1 1 0 G2F domain APC2 PF08672.6 gi|284161750|ref|YP_003400373.1| - 0.045 14.0 0.1 0.083 13.1 0.1 1.5 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 THDPS_N_2 PF14805.1 gi|284161750|ref|YP_003400373.1| - 0.056 13.3 0.0 0.076 12.8 0.0 1.2 1 0 0 1 1 1 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal DUF244 PF03112.9 gi|284161750|ref|YP_003400373.1| - 0.078 12.5 1.4 0.084 12.4 1.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein family (ORF7) DUF DUF4473 PF14747.1 gi|284161750|ref|YP_003400373.1| - 0.11 12.7 1.1 0.13 12.4 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4473) DUF4342 PF14242.1 gi|284161750|ref|YP_003400373.1| - 0.26 11.0 2.3 0.28 10.9 0.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4342) TrmB PF01978.14 gi|284161751|ref|YP_003400374.1| - 3.3e-17 61.9 0.2 4.9e-17 61.3 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|284161751|ref|YP_003400374.1| - 8.3e-07 28.5 0.0 0.00016 21.2 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|284161751|ref|YP_003400374.1| - 2.6e-05 23.9 0.4 5.5e-05 22.8 0.1 1.7 2 0 0 2 2 1 1 Transcriptional regulator PadR-like family HTH_36 PF13730.1 gi|284161751|ref|YP_003400374.1| - 7.9e-05 22.7 0.0 0.00015 21.8 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284161751|ref|YP_003400374.1| - 0.00017 21.4 0.1 0.00037 20.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|284161751|ref|YP_003400374.1| - 0.00019 20.7 0.0 0.00043 19.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284161751|ref|YP_003400374.1| - 0.00027 20.5 0.0 0.00079 19.0 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|284161751|ref|YP_003400374.1| - 0.00031 20.2 0.0 0.00053 19.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|284161751|ref|YP_003400374.1| - 0.00035 20.0 0.3 0.00044 19.7 0.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit Penicillinase_R PF03965.11 gi|284161751|ref|YP_003400374.1| - 0.00045 20.2 0.0 0.00064 19.7 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_29 PF13551.1 gi|284161751|ref|YP_003400374.1| - 0.00048 20.2 0.0 0.00062 19.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|284161751|ref|YP_003400374.1| - 0.0058 16.6 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.14 gi|284161751|ref|YP_003400374.1| - 0.0063 16.4 0.0 0.008 16.0 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family MarR_2 PF12802.2 gi|284161751|ref|YP_003400374.1| - 0.0074 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|284161751|ref|YP_003400374.1| - 0.0092 15.6 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.16 gi|284161751|ref|YP_003400374.1| - 0.011 15.1 0.2 0.028 13.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Replic_Relax PF13814.1 gi|284161751|ref|YP_003400374.1| - 0.013 15.3 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_38 PF13936.1 gi|284161751|ref|YP_003400374.1| - 0.025 14.1 0.0 0.069 12.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|284161751|ref|YP_003400374.1| - 0.029 14.0 0.1 0.06 13.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|284161751|ref|YP_003400374.1| - 0.032 14.0 0.2 0.07 12.9 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|284161751|ref|YP_003400374.1| - 0.065 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.7 gi|284161751|ref|YP_003400374.1| - 0.081 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|284161751|ref|YP_003400374.1| - 0.13 12.0 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Cytochrom_C_asm PF01578.15 gi|284161752|ref|YP_003400375.1| - 4.2e-16 59.1 18.6 4.2e-16 59.1 12.9 4.4 2 1 0 3 3 3 1 Cytochrome C assembly protein Cytochrom_C_asm PF01578.15 gi|284161753|ref|YP_003400376.1| - 1.3e-20 73.9 12.9 1.3e-20 73.9 8.9 1.5 2 0 0 2 2 2 1 Cytochrome C assembly protein DUF3464 PF11947.3 gi|284161753|ref|YP_003400376.1| - 0.86 9.0 3.1 4.6 6.6 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3464) DUF1614 PF07758.6 gi|284161753|ref|YP_003400376.1| - 1.2 8.8 5.5 0.23 11.1 0.7 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1614) BCHF PF07284.6 gi|284161753|ref|YP_003400376.1| - 1.8 8.3 11.6 0.34 10.7 1.8 3.1 1 1 2 4 4 4 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) PepSY_TM_2 PF13703.1 gi|284161753|ref|YP_003400376.1| - 5 7.3 8.3 2.3 8.4 0.3 3.2 2 2 1 3 3 3 0 PepSY-associated TM helix DUF418 PF04235.7 gi|284161753|ref|YP_003400376.1| - 7.5 6.2 12.3 1.9 8.1 0.4 2.9 1 1 1 3 3 3 0 Protein of unknown function (DUF418) CcmE PF03100.10 gi|284161755|ref|YP_003400378.1| - 0.002 17.6 0.1 0.0027 17.2 0.0 1.2 1 0 0 1 1 1 1 CcmE ABC_tran PF00005.22 gi|284161756|ref|YP_003400379.1| - 2.3e-28 99.1 0.0 2.8e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284161756|ref|YP_003400379.1| - 7.8e-13 49.0 0.2 3.4e-06 27.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|284161756|ref|YP_003400379.1| - 1.3e-07 32.1 0.0 1.4e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284161756|ref|YP_003400379.1| - 6.9e-06 25.3 1.1 0.017 14.1 1.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|284161756|ref|YP_003400379.1| - 0.00041 19.8 0.1 0.00088 18.8 0.0 1.6 1 1 1 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|284161756|ref|YP_003400379.1| - 0.00063 19.6 0.0 0.0033 17.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284161756|ref|YP_003400379.1| - 0.00069 18.9 0.3 0.2 10.8 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284161756|ref|YP_003400379.1| - 0.0013 18.2 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|284161756|ref|YP_003400379.1| - 0.0014 18.2 0.1 0.0062 16.2 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain DUF87 PF01935.12 gi|284161756|ref|YP_003400379.1| - 0.0026 17.6 0.5 0.03 14.1 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function DUF87 NACHT PF05729.7 gi|284161756|ref|YP_003400379.1| - 0.0051 16.4 0.0 0.01 15.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain FtsK_SpoIIIE PF01580.13 gi|284161756|ref|YP_003400379.1| - 0.0051 16.2 0.0 0.01 15.3 0.0 1.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|284161756|ref|YP_003400379.1| - 0.0056 16.0 0.0 0.007 15.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|284161756|ref|YP_003400379.1| - 0.011 15.9 0.1 0.023 14.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|284161756|ref|YP_003400379.1| - 0.012 14.4 0.0 0.023 13.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_13 PF13166.1 gi|284161756|ref|YP_003400379.1| - 0.017 13.6 0.4 0.88 7.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|284161756|ref|YP_003400379.1| - 0.022 14.6 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|284161756|ref|YP_003400379.1| - 0.024 14.2 0.0 0.27 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|284161756|ref|YP_003400379.1| - 0.033 14.6 0.0 0.055 13.9 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|284161756|ref|YP_003400379.1| - 0.036 13.7 0.1 0.091 12.4 0.0 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|284161756|ref|YP_003400379.1| - 0.057 13.0 0.2 0.077 12.6 0.1 1.3 1 1 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|284161756|ref|YP_003400379.1| - 0.064 13.4 0.1 0.23 11.6 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|284161756|ref|YP_003400379.1| - 0.076 12.9 0.1 0.15 12.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|284161756|ref|YP_003400379.1| - 0.16 11.9 0.0 5.4 6.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|284161756|ref|YP_003400379.1| - 0.28 12.0 1.7 5.5 7.8 1.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284161756|ref|YP_003400379.1| - 0.44 10.8 2.4 2.2 8.6 1.6 2.2 1 1 0 1 1 1 0 AAA domain ABC2_membrane_4 PF12730.2 gi|284161757|ref|YP_003400380.1| - 1.7e-05 24.0 29.7 2.3e-05 23.6 20.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|284161757|ref|YP_003400380.1| - 9.1e-05 21.8 28.8 0.00011 21.6 20.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|284161757|ref|YP_003400380.1| - 0.0031 16.7 20.3 0.0038 16.4 14.1 1.1 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_3 PF12698.2 gi|284161757|ref|YP_003400380.1| - 0.015 14.3 31.1 0.019 13.9 21.5 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|284161757|ref|YP_003400380.1| - 0.091 11.6 23.1 0.32 9.8 16.0 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein S4 PF01479.20 gi|284161758|ref|YP_003400381.1| - 3.3e-13 48.8 0.8 5e-13 48.2 0.2 1.6 2 0 0 2 2 2 1 S4 domain Methyltransf_18 PF12847.2 gi|284161758|ref|YP_003400381.1| - 2.5e-10 40.9 0.0 1.1e-09 38.8 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284161758|ref|YP_003400381.1| - 4.8e-09 35.9 0.0 6e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|284161758|ref|YP_003400381.1| - 1.9e-07 31.2 0.0 2.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.12 gi|284161758|ref|YP_003400381.1| - 2e-06 26.8 0.0 2.3e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_26 PF13659.1 gi|284161758|ref|YP_003400381.1| - 4.8e-06 26.6 0.0 8e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284161758|ref|YP_003400381.1| - 0.0001 22.6 0.0 0.00023 21.6 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|284161758|ref|YP_003400381.1| - 0.00095 19.9 0.0 0.0018 19.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284161758|ref|YP_003400381.1| - 0.0012 19.1 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284161758|ref|YP_003400381.1| - 0.0029 18.0 0.0 0.0053 17.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284161758|ref|YP_003400381.1| - 0.0035 17.0 0.0 0.0053 16.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|284161758|ref|YP_003400381.1| - 0.025 13.4 0.0 0.035 12.9 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase S4_2 PF13275.1 gi|284161758|ref|YP_003400381.1| - 0.066 12.8 0.0 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 S4 domain MetW PF07021.7 gi|284161758|ref|YP_003400381.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PK_C PF02887.11 gi|284161759|ref|YP_003400382.1| - 3.4e-17 62.0 0.2 4.8e-17 61.5 0.1 1.2 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.19 gi|284161759|ref|YP_003400382.1| - 0.016 14.5 0.0 0.034 13.4 0.0 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF131 PF01998.12 gi|284161760|ref|YP_003400383.1| - 1.3e-18 66.0 4.6 1.3e-18 66.0 3.2 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 TerC PF03741.11 gi|284161760|ref|YP_003400383.1| - 0.00024 20.6 0.1 0.00028 20.3 0.1 1.1 1 0 0 1 1 1 1 Integral membrane protein TerC family DUF1634 PF07843.6 gi|284161760|ref|YP_003400383.1| - 0.0005 19.6 1.4 0.0023 17.5 1.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1634) ABC2_membrane_2 PF12679.2 gi|284161760|ref|YP_003400383.1| - 0.012 14.4 0.3 0.021 13.6 0.1 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|284161760|ref|YP_003400383.1| - 0.018 14.0 1.3 0.024 13.6 0.9 1.2 1 1 0 1 1 1 0 ABC-2 family transporter protein Cytochrom_B_N PF00033.14 gi|284161760|ref|YP_003400383.1| - 0.046 13.0 0.8 0.18 11.1 0.5 1.8 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF2976 PF11190.3 gi|284161760|ref|YP_003400383.1| - 0.069 12.6 3.0 0.3 10.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) DUF4097 PF13349.1 gi|284161760|ref|YP_003400383.1| - 0.073 12.6 0.0 0.073 12.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4097) Ion_trans_N PF08412.5 gi|284161760|ref|YP_003400383.1| - 0.1 11.9 2.5 0.38 10.1 0.0 2.1 2 0 0 2 2 2 0 Ion transport protein N-terminal MacB_PCD PF12704.2 gi|284161760|ref|YP_003400383.1| - 0.14 11.6 1.3 1.5 8.3 0.0 2.1 2 0 0 2 2 2 0 MacB-like periplasmic core domain TctB PF07331.6 gi|284161760|ref|YP_003400383.1| - 0.18 11.4 4.7 1.1 8.9 3.2 2.0 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF4064 PF13273.1 gi|284161760|ref|YP_003400383.1| - 0.39 10.8 7.6 1.1 9.3 5.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) SHR3_chaperone PF08229.6 gi|284161760|ref|YP_003400383.1| - 0.77 8.6 3.3 0.21 10.5 0.1 1.6 2 0 0 2 2 2 0 ER membrane protein SH3 DUF2207 PF09972.4 gi|284161760|ref|YP_003400383.1| - 1.3 7.5 6.3 7.3 5.0 4.4 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3040 PF11239.3 gi|284161760|ref|YP_003400383.1| - 3.9 7.5 8.6 1.1 9.3 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF805 PF05656.9 gi|284161760|ref|YP_003400383.1| - 8.5 6.2 8.2 2.1e+02 1.7 5.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF131 PF01998.12 gi|284161761|ref|YP_003400384.1| - 1.2e-14 53.3 9.2 1.2e-14 53.3 6.4 2.0 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF1459 PF07312.6 gi|284161761|ref|YP_003400384.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1459) DUF2970 PF11174.3 gi|284161761|ref|YP_003400384.1| - 4.2 7.0 8.9 1.5 8.4 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) MoeA_N PF03453.12 gi|284161762|ref|YP_003400385.1| - 7.6e-52 174.9 0.8 1.7e-51 173.7 0.6 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|284161762|ref|YP_003400385.1| - 1.8e-31 108.4 0.1 3.9e-31 107.3 0.1 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|284161762|ref|YP_003400385.1| - 1.1e-19 70.1 3.6 2.6e-19 68.9 0.1 3.4 4 0 0 4 4 4 1 MoeA C-terminal region (domain IV) YjzC PF14168.1 gi|284161762|ref|YP_003400385.1| - 0.12 12.3 0.2 10 6.0 0.0 3.2 3 1 0 3 3 3 0 YjzC-like protein 7TMR-HDED PF07697.6 gi|284161762|ref|YP_003400385.1| - 0.13 12.0 0.1 0.22 11.2 0.1 1.4 1 0 0 1 1 1 0 7TM-HD extracellular DUF1743 PF08489.6 gi|284161763|ref|YP_003400386.1| - 6.5e-37 125.8 0.0 1.5e-36 124.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|284161763|ref|YP_003400386.1| - 1.7e-06 27.8 0.2 3.6e-06 26.7 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Zn_Tnp_IS1595 PF12760.2 gi|284161763|ref|YP_003400386.1| - 0.0086 15.8 1.8 0.018 14.8 1.3 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284161763|ref|YP_003400386.1| - 0.012 15.2 2.0 0.025 14.2 1.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DRP PF06044.7 gi|284161763|ref|YP_003400386.1| - 0.038 12.9 0.1 0.058 12.3 0.1 1.2 1 0 0 1 1 1 0 Dam-replacing family tRNA_anti_2 PF13742.1 gi|284161763|ref|YP_003400386.1| - 0.072 12.9 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain HypA PF01155.14 gi|284161763|ref|YP_003400386.1| - 0.096 12.3 0.4 0.19 11.3 0.3 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Vps39_2 PF10367.4 gi|284161763|ref|YP_003400386.1| - 0.14 12.3 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 Aconitase PF00330.15 gi|284161764|ref|YP_003400387.1| - 4.9e-87 292.3 4.4 5.1e-59 199.9 1.4 2.0 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|284161764|ref|YP_003400387.1| - 0.044 12.3 0.0 0.074 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) PPP5 PF08321.7 gi|284161764|ref|YP_003400387.1| - 0.079 12.9 0.1 0.26 11.3 0.0 1.7 1 1 0 1 1 1 0 PPP5 TPR repeat region DNA_processg_A PF02481.10 gi|284161765|ref|YP_003400388.1| - 1.7e-09 36.8 1.1 2.3e-06 26.6 0.2 2.0 2 0 0 2 2 2 2 DNA recombination-mediator protein A Lysine_decarbox PF03641.9 gi|284161765|ref|YP_003400388.1| - 1.9e-09 37.4 0.2 1.9e-09 37.4 0.1 1.7 2 1 0 2 2 2 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|284161765|ref|YP_003400388.1| - 0.008 16.0 0.2 0.013 15.3 0.1 1.6 2 0 0 2 2 2 1 Nucleoside 2-deoxyribosyltransferase Mastoparan_2 PF08251.6 gi|284161765|ref|YP_003400388.1| - 0.093 12.7 1.2 0.25 11.4 0.9 1.7 1 0 0 1 1 1 0 Mastoparan peptide Aminotran_1_2 PF00155.16 gi|284161766|ref|YP_003400389.1| - 1.5e-51 175.4 0.0 1.7e-51 175.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|284161766|ref|YP_003400389.1| - 4.7e-09 35.3 0.0 1e-08 34.2 0.0 1.5 1 1 1 2 2 2 1 Allinase NAAA-beta PF15508.1 gi|284161766|ref|YP_003400389.1| - 0.0024 18.1 0.0 0.0061 16.8 0.0 1.7 1 0 0 1 1 1 1 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Cys_Met_Meta_PP PF01053.15 gi|284161766|ref|YP_003400389.1| - 0.023 13.0 0.0 0.027 12.7 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|284161766|ref|YP_003400389.1| - 0.04 12.6 0.0 0.11 11.1 0.0 1.6 2 0 0 2 2 2 0 Aminotransferase class-V DUF4557 PF15101.1 gi|284161767|ref|YP_003400390.1| - 0.014 15.2 0.5 0.018 14.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4557) DisA_N PF02457.11 gi|284161768|ref|YP_003400391.1| - 7.2e-29 99.4 0.1 1.1e-28 98.8 0.1 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DUF87 PF01935.12 gi|284161769|ref|YP_003400392.1| - 2.8e-44 151.6 0.0 4.6e-44 150.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|284161769|ref|YP_003400392.1| - 9.9e-22 77.7 0.1 2.7e-21 76.2 0.1 1.6 1 1 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|284161769|ref|YP_003400392.1| - 6.3e-12 45.2 0.6 2.6e-11 43.2 0.4 2.1 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.7 gi|284161769|ref|YP_003400392.1| - 1.2e-05 23.9 0.1 4.7e-05 21.9 0.0 1.7 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|284161769|ref|YP_003400392.1| - 2.2e-05 23.2 0.0 0.0021 16.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|284161769|ref|YP_003400392.1| - 0.029 13.8 0.1 0.13 11.6 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Lon_C PF05362.8 gi|284161770|ref|YP_003400393.1| - 3.4e-32 111.4 2.7 6e-32 110.6 1.8 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|284161770|ref|YP_003400393.1| - 1.3e-28 99.9 0.0 1.5e-18 66.7 0.0 2.7 3 0 0 3 3 3 2 AAA domain Mg_chelatase PF01078.16 gi|284161770|ref|YP_003400393.1| - 2.4e-16 59.5 0.3 1.5e-10 40.6 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|284161770|ref|YP_003400393.1| - 7.6e-16 58.0 0.0 3.8e-09 36.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain LAGLIDADG_3 PF14528.1 gi|284161770|ref|YP_003400393.1| - 9.1e-16 57.8 3.1 3.4e-11 43.2 0.1 2.7 2 0 0 2 2 2 2 LAGLIDADG-like domain MCM PF00493.18 gi|284161770|ref|YP_003400393.1| - 3e-12 45.9 0.6 0.0012 17.6 0.0 3.4 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|284161770|ref|YP_003400393.1| - 6.9e-11 42.0 0.1 0.00035 20.3 0.0 2.9 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|284161770|ref|YP_003400393.1| - 3.3e-09 36.3 0.3 7.3e-09 35.1 0.2 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_22 PF13401.1 gi|284161770|ref|YP_003400393.1| - 1.5e-06 28.4 0.0 0.00093 19.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|284161770|ref|YP_003400393.1| - 3.3e-06 27.3 0.0 0.0058 16.8 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|284161770|ref|YP_003400393.1| - 5.8e-06 26.4 0.0 0.01 15.8 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|284161770|ref|YP_003400393.1| - 4.5e-05 22.6 0.1 0.031 13.3 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|284161770|ref|YP_003400393.1| - 5.3e-05 22.8 0.1 0.12 12.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|284161770|ref|YP_003400393.1| - 0.00021 20.9 0.0 0.00064 19.4 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|284161770|ref|YP_003400393.1| - 0.0004 19.6 0.1 0.0043 16.3 0.0 2.4 3 0 0 3 3 2 1 PhoH-like protein AAA_PrkA PF08298.6 gi|284161770|ref|YP_003400393.1| - 0.0016 17.1 0.1 1.1 7.9 0.0 2.3 2 0 0 2 2 2 2 PrkA AAA domain AAA_18 PF13238.1 gi|284161770|ref|YP_003400393.1| - 0.0025 18.1 0.1 0.021 15.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|284161770|ref|YP_003400393.1| - 0.0029 17.4 0.0 0.58 9.9 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|284161770|ref|YP_003400393.1| - 0.0035 16.9 0.0 0.0079 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|284161770|ref|YP_003400393.1| - 0.007 16.0 0.0 0.026 14.1 0.0 2.0 2 0 0 2 2 1 1 NACHT domain AAA_16 PF13191.1 gi|284161770|ref|YP_003400393.1| - 0.013 15.4 0.0 0.043 13.8 0.0 1.9 2 0 0 2 2 1 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|284161770|ref|YP_003400393.1| - 0.02 14.3 0.0 0.051 12.9 0.0 1.6 2 0 0 2 2 1 0 IstB-like ATP binding protein DUF815 PF05673.8 gi|284161770|ref|YP_003400393.1| - 0.023 13.6 0.0 0.056 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|284161770|ref|YP_003400393.1| - 0.026 14.8 0.0 0.084 13.1 0.0 1.8 1 0 0 1 1 1 0 ABC transporter DUF3784 PF12650.2 gi|284161770|ref|YP_003400393.1| - 0.028 14.3 0.4 0.062 13.2 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) AAA_10 PF12846.2 gi|284161770|ref|YP_003400393.1| - 0.032 13.6 0.0 0.065 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|284161770|ref|YP_003400393.1| - 0.034 14.9 0.1 0.29 11.9 0.0 2.7 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|284161770|ref|YP_003400393.1| - 0.039 13.8 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|284161770|ref|YP_003400393.1| - 0.039 12.8 0.0 0.079 11.8 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF2838 PF10998.3 gi|284161770|ref|YP_003400393.1| - 0.18 11.7 0.3 0.33 10.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2838) Radical_SAM PF04055.16 gi|284161771|ref|YP_003400394.1| - 5e-29 101.6 2.3 9.1e-28 97.5 0.4 2.8 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|284161771|ref|YP_003400394.1| - 6.3e-25 87.3 0.0 7.9e-24 83.8 0.0 2.4 3 0 0 3 3 3 1 B12 binding domain Fer4_14 PF13394.1 gi|284161771|ref|YP_003400394.1| - 0.00011 22.2 0.2 0.0017 18.4 0.1 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain Radical_SAM_N PF08497.5 gi|284161771|ref|YP_003400394.1| - 0.0093 14.9 0.1 0.099 11.5 0.0 2.5 1 1 1 2 2 2 1 Radical SAM N-terminal Glyco_trans_4_2 PF13477.1 gi|284161771|ref|YP_003400394.1| - 0.038 13.8 0.1 0.62 9.8 0.0 2.5 2 0 0 2 2 2 0 Glycosyl transferase 4-like DUF4253 PF14062.1 gi|284161771|ref|YP_003400394.1| - 0.043 13.4 0.0 0.46 10.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4253) Fer4_12 PF13353.1 gi|284161771|ref|YP_003400394.1| - 0.044 13.9 4.6 0.29 11.2 0.4 3.3 3 1 1 4 4 4 0 4Fe-4S single cluster domain DUF3880 PF12996.2 gi|284161771|ref|YP_003400394.1| - 0.064 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 DUF based on E. rectale Gene description (DUF3880) Radical_SAM PF04055.16 gi|284161772|ref|YP_003400395.1| - 1.2e-12 48.3 1.6 6.9e-12 45.8 0.6 2.3 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|284161772|ref|YP_003400395.1| - 4.7e-08 32.9 0.0 1.1e-07 31.7 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain DSL PF01414.14 gi|284161773|ref|YP_003400396.1| - 0.089 12.8 0.3 0.13 12.2 0.2 1.3 1 0 0 1 1 1 0 Delta serrate ligand AIRC PF00731.15 gi|284161774|ref|YP_003400397.1| - 7.9e-19 67.4 0.1 2.7e-18 65.6 0.1 1.7 2 0 0 2 2 2 1 AIR carboxylase CPSase_L_D2 PF02786.12 gi|284161775|ref|YP_003400398.1| - 6.7e-113 375.1 0.4 5.2e-73 244.8 0.0 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|284161775|ref|YP_003400398.1| - 3.4e-49 165.5 0.1 2.2e-23 82.4 0.0 3.0 3 0 0 3 3 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|284161775|ref|YP_003400398.1| - 5.3e-47 158.6 2.8 1.5e-46 157.1 1.9 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|284161775|ref|YP_003400398.1| - 4.6e-45 153.6 0.6 3.4e-21 75.7 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|284161775|ref|YP_003400398.1| - 1.5e-27 96.2 0.0 8e-09 34.6 0.0 4.3 4 0 0 4 4 4 4 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|284161775|ref|YP_003400398.1| - 2e-25 88.5 0.1 4.3e-24 84.2 0.0 3.1 3 0 0 3 3 3 1 MGS-like domain Dala_Dala_lig_C PF07478.8 gi|284161775|ref|YP_003400398.1| - 7.1e-17 61.4 0.2 3.3e-07 29.8 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|284161775|ref|YP_003400398.1| - 1.8e-15 56.7 0.1 2.5e-07 30.2 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|284161775|ref|YP_003400398.1| - 1.2e-14 54.2 0.0 3.8e-06 26.4 0.0 3.0 2 1 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.1 gi|284161775|ref|YP_003400398.1| - 9.5e-11 41.3 0.0 0.0004 19.6 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|284161775|ref|YP_003400398.1| - 3.3e-10 40.0 0.6 3e-06 27.1 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|284161775|ref|YP_003400398.1| - 3.9e-10 39.5 0.4 3.9e-05 23.3 0.0 2.7 3 0 0 3 3 3 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_2 PF08442.5 gi|284161775|ref|YP_003400398.1| - 1.5e-08 34.2 0.2 0.0012 18.2 0.0 2.9 3 0 0 3 3 3 2 ATP-grasp domain adh_short_C2 PF13561.1 gi|284161775|ref|YP_003400398.1| - 0.033 13.9 0.0 3.3 7.3 0.0 3.2 2 1 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase HTH_23 PF13384.1 gi|284161775|ref|YP_003400398.1| - 0.047 13.3 0.3 0.71 9.6 0.0 3.1 3 0 0 3 3 3 0 Homeodomain-like domain CoA_binding_2 PF13380.1 gi|284161775|ref|YP_003400398.1| - 0.058 13.5 0.0 2 8.5 0.0 3.4 2 1 0 2 2 2 0 CoA binding domain CPSase_sm_chain PF00988.17 gi|284161776|ref|YP_003400399.1| - 2.7e-55 185.4 0.0 4.2e-55 184.8 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|284161776|ref|YP_003400399.1| - 6.6e-50 169.2 0.0 8.7e-50 168.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284161776|ref|YP_003400399.1| - 9.3e-08 31.7 0.1 9.6e-06 25.1 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 SAICAR_synt PF01259.13 gi|284161777|ref|YP_003400400.1| - 3.4e-22 78.7 0.1 4.8e-22 78.2 0.1 1.2 1 0 0 1 1 1 1 SAICAR synthetase YARHG PF13308.1 gi|284161777|ref|YP_003400400.1| - 0.079 12.5 0.1 0.2 11.2 0.0 1.7 2 0 0 2 2 2 0 YARHG domain AIRC PF00731.15 gi|284161778|ref|YP_003400401.1| - 6.8e-41 139.0 0.5 7.8e-41 138.8 0.4 1.0 1 0 0 1 1 1 1 AIR carboxylase adh_short_C2 PF13561.1 gi|284161778|ref|YP_003400401.1| - 0.012 15.3 0.2 0.015 15.0 0.1 1.4 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase ABC_sub_bind PF04392.7 gi|284161778|ref|YP_003400401.1| - 0.019 13.9 0.1 0.03 13.2 0.1 1.3 1 0 0 1 1 1 0 ABC transporter substrate binding protein UPF0180 PF03698.8 gi|284161778|ref|YP_003400401.1| - 0.037 13.8 0.0 0.15 11.9 0.0 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) Arg_tRNA_synt_N PF03485.11 gi|284161778|ref|YP_003400401.1| - 0.039 14.4 0.6 0.74 10.3 0.0 2.5 2 1 1 3 3 3 0 Arginyl tRNA synthetase N terminal domain HGTP_anticodon PF03129.15 gi|284161778|ref|YP_003400401.1| - 0.066 13.1 0.6 0.23 11.4 0.0 2.0 2 0 0 2 2 2 0 Anticodon binding domain HTH_20 PF12840.2 gi|284161779|ref|YP_003400402.1| - 3.7e-11 42.6 0.1 6.2e-11 41.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284161779|ref|YP_003400402.1| - 1.4e-09 37.4 0.1 2.2e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284161779|ref|YP_003400402.1| - 3.3e-08 32.7 0.1 4.8e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284161779|ref|YP_003400402.1| - 2.4e-07 30.3 0.0 3.3e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284161779|ref|YP_003400402.1| - 6.9e-07 28.8 0.8 8.2e-07 28.6 0.1 1.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|284161779|ref|YP_003400402.1| - 0.0001 21.7 0.3 0.00037 19.9 0.0 1.9 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|284161779|ref|YP_003400402.1| - 0.0015 18.1 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|284161779|ref|YP_003400402.1| - 0.0054 16.3 0.0 0.0085 15.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain FaeA PF04703.7 gi|284161779|ref|YP_003400402.1| - 0.01 15.9 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein LexA_DNA_bind PF01726.11 gi|284161779|ref|YP_003400402.1| - 0.021 14.4 0.0 0.055 13.0 0.0 1.7 2 1 0 2 2 2 0 LexA DNA binding domain HTH_9 PF08221.6 gi|284161779|ref|YP_003400402.1| - 0.047 13.5 0.0 0.071 12.9 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_DeoR PF08220.7 gi|284161779|ref|YP_003400402.1| - 0.063 12.8 0.0 0.12 11.9 0.0 1.5 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|284161779|ref|YP_003400402.1| - 0.066 13.3 0.0 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator HTH_10 PF04967.7 gi|284161779|ref|YP_003400402.1| - 0.073 12.6 0.3 0.31 10.6 0.0 2.1 2 1 1 3 3 3 0 HTH DNA binding domain HTH_34 PF13601.1 gi|284161779|ref|YP_003400402.1| - 0.075 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Glyco_trans_1_2 PF13524.1 gi|284161779|ref|YP_003400402.1| - 0.082 13.1 0.7 8.9 6.6 0.2 2.1 2 0 0 2 2 2 0 Glycosyl transferases group 1 HTH_IclR PF09339.5 gi|284161779|ref|YP_003400402.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain PolyA_pol_RNAbd PF12627.2 gi|284161779|ref|YP_003400402.1| - 0.69 9.5 2.4 20 4.8 0.0 2.5 3 0 0 3 3 3 0 Probable RNA and SrmB- binding site of polymerase A DUF3561 PF12084.3 gi|284161780|ref|YP_003400403.1| - 0.71 9.7 9.2 0.037 13.8 1.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3561) Thioredoxin_3 PF13192.1 gi|284161781|ref|YP_003400404.1| - 9.6e-26 89.4 1.1 1.1e-25 89.1 0.8 1.1 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|284161781|ref|YP_003400404.1| - 0.00022 21.1 0.3 0.00077 19.4 0.2 1.9 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|284161781|ref|YP_003400404.1| - 0.0011 19.0 0.3 0.043 13.8 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin zinc_ribbon_5 PF13719.1 gi|284161781|ref|YP_003400404.1| - 0.011 15.3 0.2 0.02 14.4 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284161781|ref|YP_003400404.1| - 0.03 14.0 0.2 0.051 13.2 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain ArsD PF06953.6 gi|284161781|ref|YP_003400404.1| - 0.031 14.4 0.0 0.044 13.9 0.0 1.3 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD DUF1525 PF07511.6 gi|284161781|ref|YP_003400404.1| - 0.055 13.4 0.1 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) MFS_1 PF07690.11 gi|284161782|ref|YP_003400405.1| - 2e-52 178.0 53.0 2.5e-37 128.4 22.2 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|284161782|ref|YP_003400405.1| - 4.4e-10 38.7 14.1 4.4e-10 38.7 9.8 3.1 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|284161782|ref|YP_003400405.1| - 4.3e-08 31.9 41.7 3.3e-06 25.7 18.6 2.7 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|284161782|ref|YP_003400405.1| - 5.5e-08 31.3 17.2 9.9e-08 30.5 2.9 2.4 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|284161782|ref|YP_003400405.1| - 0.00057 19.6 4.4 0.00061 19.5 0.6 3.1 2 0 0 2 2 2 1 MFS_1 like family OATP PF03137.15 gi|284161782|ref|YP_003400405.1| - 7.6 4.4 21.8 0.24 9.3 0.5 3.9 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family MarR_2 PF12802.2 gi|284161783|ref|YP_003400406.1| - 1.3e-09 37.5 0.2 2.2e-09 36.8 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284161783|ref|YP_003400406.1| - 2e-09 37.0 0.1 4.1e-09 36.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284161783|ref|YP_003400406.1| - 6.8e-09 34.9 0.2 1.5e-08 33.8 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284161783|ref|YP_003400406.1| - 1.3e-07 31.8 0.1 1.9e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|284161783|ref|YP_003400406.1| - 9.3e-07 28.4 0.9 1.3e-05 24.8 0.1 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|284161783|ref|YP_003400406.1| - 1.6e-05 24.9 2.8 5.1e-05 23.3 1.9 1.8 1 1 0 1 1 1 1 Penicillinase repressor GntR PF00392.16 gi|284161783|ref|YP_003400406.1| - 2.4e-05 23.6 0.3 5.4e-05 22.5 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF387 PF04079.11 gi|284161783|ref|YP_003400406.1| - 2.5e-05 23.6 0.6 4.1e-05 22.9 0.2 1.5 1 1 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_Crp_2 PF13545.1 gi|284161783|ref|YP_003400406.1| - 4.8e-05 23.0 0.0 9.3e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|284161783|ref|YP_003400406.1| - 7.7e-05 22.1 2.7 0.00022 20.6 1.8 1.9 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|284161783|ref|YP_003400406.1| - 8e-05 22.3 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.12 gi|284161783|ref|YP_003400406.1| - 0.0001 21.8 2.0 0.0091 15.6 0.2 2.6 2 1 1 3 3 3 1 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|284161783|ref|YP_003400406.1| - 0.00015 21.3 0.0 0.0003 20.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.1 gi|284161783|ref|YP_003400406.1| - 0.00018 21.5 0.2 0.00041 20.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_41 PF14502.1 gi|284161783|ref|YP_003400406.1| - 0.00034 20.1 0.1 0.00061 19.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|284161783|ref|YP_003400406.1| - 0.00076 19.0 0.2 0.0019 17.7 0.2 1.7 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|284161783|ref|YP_003400406.1| - 0.00078 18.9 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|284161783|ref|YP_003400406.1| - 0.00098 18.8 1.5 0.0012 18.6 0.3 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix B-block_TFIIIC PF04182.7 gi|284161783|ref|YP_003400406.1| - 0.001 18.8 0.1 0.0015 18.2 0.1 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC PadR PF03551.9 gi|284161783|ref|YP_003400406.1| - 0.0016 18.2 0.4 0.0035 17.0 0.3 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|284161783|ref|YP_003400406.1| - 0.0021 18.1 0.2 0.0045 17.0 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator PaaX PF07848.7 gi|284161783|ref|YP_003400406.1| - 0.0022 17.9 0.2 0.0035 17.2 0.2 1.3 1 0 0 1 1 1 1 PaaX-like protein RepL PF05732.6 gi|284161783|ref|YP_003400406.1| - 0.0065 15.6 4.7 0.023 13.9 3.3 2.0 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_1 PF00126.22 gi|284161783|ref|YP_003400406.1| - 0.0067 16.1 0.2 0.015 14.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_10 PF04967.7 gi|284161783|ref|YP_003400406.1| - 0.0072 15.8 0.1 0.019 14.5 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|284161783|ref|YP_003400406.1| - 0.0078 16.1 0.1 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|284161783|ref|YP_003400406.1| - 0.009 16.0 0.4 0.015 15.3 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|284161783|ref|YP_003400406.1| - 0.01 15.9 0.1 0.016 15.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_34 PF13601.1 gi|284161783|ref|YP_003400406.1| - 0.011 15.7 0.9 0.015 15.2 0.2 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|284161783|ref|YP_003400406.1| - 0.013 15.1 0.1 0.028 14.0 0.0 1.6 1 1 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|284161783|ref|YP_003400406.1| - 0.017 14.4 0.0 0.042 13.1 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Sulfolobus_pRN PF05584.6 gi|284161783|ref|YP_003400406.1| - 0.028 14.3 2.5 0.037 13.9 1.0 1.8 1 1 0 1 1 1 0 Sulfolobus plasmid regulatory protein Rio2_N PF09202.6 gi|284161783|ref|YP_003400406.1| - 0.029 14.4 1.4 0.16 12.0 0.1 2.4 1 1 2 3 3 3 0 Rio2, N-terminal FaeA PF04703.7 gi|284161783|ref|YP_003400406.1| - 0.042 14.0 0.1 0.065 13.3 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_DeoR PF08220.7 gi|284161783|ref|YP_003400406.1| - 0.076 12.5 0.1 0.15 11.5 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain S10_plectin PF03501.10 gi|284161783|ref|YP_003400406.1| - 0.078 12.8 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Plectin/S10 domain NYD-SP28 PF14772.1 gi|284161783|ref|YP_003400406.1| - 0.18 11.8 3.4 0.29 11.2 2.3 1.4 1 0 0 1 1 1 0 Sperm tail FdhD-NarQ PF02634.10 gi|284161784|ref|YP_003400407.1| - 7.6e-30 104.1 1.4 2e-25 89.6 0.8 2.0 1 1 1 2 2 2 2 FdhD/NarQ family HTH_1 PF00126.22 gi|284161785|ref|YP_003400408.1| - 5.6e-12 45.2 0.0 8.6e-12 44.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|284161785|ref|YP_003400408.1| - 0.00036 20.4 0.1 0.00055 19.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|284161785|ref|YP_003400408.1| - 0.00084 19.4 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.1 gi|284161785|ref|YP_003400408.1| - 0.0019 17.5 0.0 0.0039 16.5 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_8 PF02954.14 gi|284161785|ref|YP_003400408.1| - 0.0053 16.2 0.0 0.0086 15.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_23 PF13384.1 gi|284161785|ref|YP_003400408.1| - 0.017 14.7 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain NUMOD1 PF07453.8 gi|284161785|ref|YP_003400408.1| - 0.019 14.7 0.2 0.035 13.9 0.1 1.4 1 0 0 1 1 1 0 NUMOD1 domain HTH_45 PF14947.1 gi|284161785|ref|YP_003400408.1| - 0.034 13.9 0.0 0.067 13.0 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_11 PF08279.7 gi|284161785|ref|YP_003400408.1| - 0.077 12.6 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain Nitrate_red_del PF02613.10 gi|284161786|ref|YP_003400409.1| - 6.8e-16 58.3 0.1 9.4e-16 57.8 0.1 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit DNA_alkylation PF08713.6 gi|284161786|ref|YP_003400409.1| - 0.03 13.8 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 DNA alkylation repair enzyme Fer4 PF00037.22 gi|284161787|ref|YP_003400410.1| - 6.9e-10 38.1 38.8 2.1e-05 23.9 1.9 5.3 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284161787|ref|YP_003400410.1| - 7.4e-09 35.2 29.0 1.8e-08 34.0 8.5 3.8 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161787|ref|YP_003400410.1| - 5e-07 30.3 30.2 0.058 14.1 1.0 4.8 4 1 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|284161787|ref|YP_003400410.1| - 2.6e-06 27.7 29.1 7.1e-06 26.3 9.2 4.0 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284161787|ref|YP_003400410.1| - 2e-05 24.7 13.2 2e-05 24.7 9.1 4.1 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284161787|ref|YP_003400410.1| - 2.3e-05 24.1 34.3 0.0027 17.5 0.2 4.6 4 2 1 5 5 5 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284161787|ref|YP_003400410.1| - 3.7e-05 23.4 14.5 0.00015 21.4 2.1 5.7 6 0 0 6 6 6 3 4Fe-4S binding domain FlpD PF02662.11 gi|284161787|ref|YP_003400410.1| - 0.00015 21.4 0.0 0.0004 20.0 0.0 1.8 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_11 PF13247.1 gi|284161787|ref|YP_003400410.1| - 0.00084 19.1 9.0 0.00084 19.1 6.2 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284161787|ref|YP_003400410.1| - 0.00091 19.2 21.6 0.004 17.1 8.1 4.5 2 2 3 5 5 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284161787|ref|YP_003400410.1| - 0.015 15.6 0.9 0.015 15.6 0.6 4.2 2 2 2 4 4 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284161787|ref|YP_003400410.1| - 0.03 14.2 2.0 0.03 14.2 1.4 5.5 6 0 0 6 6 6 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284161787|ref|YP_003400410.1| - 0.031 14.5 3.0 0.031 14.5 2.1 5.9 7 0 0 7 7 5 0 4Fe-4S binding domain Ribosomal_L32p PF01783.18 gi|284161787|ref|YP_003400410.1| - 0.093 12.9 0.5 6 7.1 0.0 3.3 2 0 0 2 2 2 0 Ribosomal L32p protein family Lar_restr_allev PF14354.1 gi|284161787|ref|YP_003400410.1| - 0.18 12.1 0.1 0.18 12.1 0.1 4.4 4 1 0 4 4 3 0 Restriction alleviation protein Lar Cys_rich_KTR PF14205.1 gi|284161787|ref|YP_003400410.1| - 0.39 10.2 7.4 0.086 12.3 0.5 3.3 3 0 0 3 3 3 0 Cysteine-rich KTR Prok-RING_1 PF14446.1 gi|284161787|ref|YP_003400410.1| - 0.74 9.5 0.0 0.74 9.5 0.0 4.8 6 0 0 6 6 5 0 Prokaryotic RING finger family 1 Fer4_17 PF13534.1 gi|284161787|ref|YP_003400410.1| - 1.4 9.3 36.5 0.59 10.5 1.7 5.1 4 1 3 7 7 6 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|284161788|ref|YP_003400411.1| - 2.2e-73 247.4 0.0 2.8e-73 247.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|284161788|ref|YP_003400411.1| - 1.6e-18 66.5 0.0 3.4e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|284161788|ref|YP_003400411.1| - 9.8e-17 60.5 0.6 2.1e-16 59.4 0.4 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.1 gi|284161789|ref|YP_003400412.1| - 2.6e-20 72.1 8.4 2.6e-20 72.1 5.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284161789|ref|YP_003400412.1| - 5.7e-13 49.0 26.1 1.2e-06 28.7 6.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284161789|ref|YP_003400412.1| - 1.2e-11 44.6 27.9 1.4e-07 31.6 7.2 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284161789|ref|YP_003400412.1| - 7.6e-11 41.6 27.9 1.8e-06 27.6 4.9 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284161789|ref|YP_003400412.1| - 4.6e-10 38.6 39.0 3e-09 36.0 2.0 5.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284161789|ref|YP_003400412.1| - 1.5e-09 37.3 39.4 1.5e-07 30.9 2.1 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|284161789|ref|YP_003400412.1| - 2.6e-09 36.9 29.2 0.0062 17.0 3.3 4.5 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|284161789|ref|YP_003400412.1| - 2.4e-07 30.2 31.2 6.9e-06 25.6 1.6 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284161789|ref|YP_003400412.1| - 3e-06 27.0 33.9 0.00029 20.9 1.9 4.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284161789|ref|YP_003400412.1| - 5e-06 26.4 26.6 0.0015 18.5 5.5 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284161789|ref|YP_003400412.1| - 9.7e-06 25.3 29.3 0.00036 20.3 1.0 3.7 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284161789|ref|YP_003400412.1| - 1.9e-05 25.1 2.7 0.00021 21.7 0.3 3.4 4 1 0 4 4 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|284161789|ref|YP_003400412.1| - 0.00089 19.5 28.5 0.021 15.1 0.8 4.2 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284161789|ref|YP_003400412.1| - 0.0047 17.2 1.2 0.0047 17.2 0.8 4.0 4 1 0 4 4 4 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284161789|ref|YP_003400412.1| - 0.066 13.6 27.5 0.18 12.2 1.8 4.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161789|ref|YP_003400412.1| - 0.091 13.5 30.5 0.55 11.0 7.5 4.2 2 2 2 4 4 4 0 4Fe-4S double cluster binding domain DUF948 PF06103.6 gi|284161790|ref|YP_003400413.1| - 2.9 7.8 7.3 0.89 9.4 3.2 1.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Cytochrom_B_N PF00033.14 gi|284161791|ref|YP_003400414.1| - 5.6e-10 38.8 17.4 5.6e-10 38.8 12.1 1.9 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|284161791|ref|YP_003400414.1| - 8.9e-08 31.7 19.1 8.9e-08 31.7 13.2 2.1 2 1 0 2 2 2 1 Prokaryotic cytochrome b561 TMPIT PF07851.8 gi|284161791|ref|YP_003400414.1| - 0.1 11.6 1.8 0.3 10.1 0.2 2.0 1 1 1 2 2 2 0 TMPIT-like protein ATP_bind_4 PF01902.12 gi|284161792|ref|YP_003400415.1| - 9e-59 198.4 0.1 1e-58 198.3 0.1 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|284161792|ref|YP_003400415.1| - 0.065 12.4 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC GATase PF00117.23 gi|284161793|ref|YP_003400416.1| - 1e-08 34.8 0.0 1.3e-08 34.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|284161793|ref|YP_003400416.1| - 9.7e-05 22.0 0.1 0.0016 18.0 0.1 2.1 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|284161793|ref|YP_003400416.1| - 0.012 15.1 0.0 0.21 11.0 0.0 2.1 1 1 0 1 1 1 0 Peptidase C26 GATase_3 PF07685.9 gi|284161793|ref|YP_003400416.1| - 0.031 13.8 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain SOR_SNZ PF01680.12 gi|284161794|ref|YP_003400417.1| - 5.8e-110 365.7 11.3 6.5e-108 359.0 6.8 2.4 1 1 1 2 2 2 2 SOR/SNZ family ThiG PF05690.9 gi|284161794|ref|YP_003400417.1| - 1.7e-09 37.1 7.5 1.3e-06 27.6 0.1 2.6 3 1 0 3 3 3 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|284161794|ref|YP_003400417.1| - 2.5e-05 23.2 0.9 0.12 11.2 0.2 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|284161794|ref|YP_003400417.1| - 0.0005 19.3 0.1 0.0005 19.3 0.1 2.7 2 1 0 2 2 2 1 Nitronate monooxygenase OMPdecase PF00215.19 gi|284161794|ref|YP_003400417.1| - 0.0032 16.9 1.2 0.0042 16.5 0.1 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|284161794|ref|YP_003400417.1| - 0.0032 16.4 1.6 0.045 12.7 0.0 2.7 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|284161794|ref|YP_003400417.1| - 0.004 16.2 0.4 0.036 13.1 0.0 2.4 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|284161794|ref|YP_003400417.1| - 0.0085 15.3 1.6 0.32 10.2 0.0 2.9 3 1 1 4 4 4 1 Histidine biosynthesis protein Chaperone_III PF07824.7 gi|284161794|ref|YP_003400417.1| - 0.011 15.5 0.0 2.4 8.0 0.0 3.1 3 0 0 3 3 3 0 Type III secretion chaperone domain FMN_dh PF01070.13 gi|284161794|ref|YP_003400417.1| - 0.012 14.5 2.6 0.039 12.7 0.1 2.4 3 0 0 3 3 3 0 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|284161794|ref|YP_003400417.1| - 0.014 13.9 0.0 0.029 12.8 0.0 1.5 1 0 0 1 1 1 0 Tryptophan synthase alpha chain TMP-TENI PF02581.12 gi|284161794|ref|YP_003400417.1| - 0.022 13.8 0.7 1.2 8.1 0.0 2.4 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|284161794|ref|YP_003400417.1| - 0.031 13.5 1.1 0.04 13.1 0.1 1.8 2 1 0 2 2 2 0 PcrB family SNO PF01174.14 gi|284161795|ref|YP_003400418.1| - 4.4e-52 176.4 0.3 4.9e-52 176.2 0.2 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|284161795|ref|YP_003400418.1| - 1.3e-11 44.3 0.0 2.3e-11 43.5 0.0 1.4 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|284161795|ref|YP_003400418.1| - 1.1e-07 31.4 0.0 2.5e-07 30.3 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|284161795|ref|YP_003400418.1| - 1.6e-06 27.9 0.0 2.2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DUF4066 PF13278.1 gi|284161795|ref|YP_003400418.1| - 8.4e-05 21.9 0.0 0.00012 21.4 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|284161795|ref|YP_003400418.1| - 0.00014 21.4 0.1 0.00074 19.0 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|284161795|ref|YP_003400418.1| - 0.00055 19.4 0.0 0.00065 19.1 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family CARDB PF07705.6 gi|284161796|ref|YP_003400419.1| - 3.7e-07 30.1 6.0 0.089 12.8 0.1 3.7 3 1 0 3 3 3 3 CARDB SKG6 PF08693.5 gi|284161796|ref|YP_003400419.1| - 0.0029 16.8 1.4 0.0066 15.7 1.0 1.6 1 0 0 1 1 1 1 Transmembrane alpha-helix domain CBM_6 PF03422.10 gi|284161796|ref|YP_003400419.1| - 0.05 13.7 0.1 0.25 11.5 0.0 2.3 2 0 0 2 2 2 0 Carbohydrate binding module (family 6) fn3_3 PF14686.1 gi|284161796|ref|YP_003400419.1| - 0.1 12.7 0.5 0.53 10.4 0.0 2.4 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain II ABC_tran PF00005.22 gi|284161797|ref|YP_003400420.1| - 1.9e-33 115.6 0.0 2.4e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284161797|ref|YP_003400420.1| - 1.9e-14 54.3 0.0 1.1e-08 35.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284161797|ref|YP_003400420.1| - 3.9e-05 22.9 0.0 0.0029 16.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284161797|ref|YP_003400420.1| - 7.6e-05 22.8 0.3 0.0065 16.6 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284161797|ref|YP_003400420.1| - 0.00034 20.0 0.0 0.00064 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|284161797|ref|YP_003400420.1| - 0.0005 19.2 0.0 0.0049 15.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|284161797|ref|YP_003400420.1| - 0.00058 19.9 0.1 0.0023 17.9 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|284161797|ref|YP_003400420.1| - 0.00072 18.7 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|284161797|ref|YP_003400420.1| - 0.00074 18.9 0.0 0.033 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|284161797|ref|YP_003400420.1| - 0.00094 18.7 0.0 0.073 12.5 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|284161797|ref|YP_003400420.1| - 0.0023 17.8 0.0 0.049 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|284161797|ref|YP_003400420.1| - 0.0051 16.7 0.0 0.053 13.4 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit T2SE PF00437.15 gi|284161797|ref|YP_003400420.1| - 0.008 15.1 0.0 0.013 14.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|284161797|ref|YP_003400420.1| - 0.023 15.5 0.1 0.066 14.0 0.1 1.8 2 0 0 2 2 1 0 AAA domain RNA12 PF10443.4 gi|284161797|ref|YP_003400420.1| - 0.06 11.8 0.0 0.081 11.3 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_23 PF13476.1 gi|284161797|ref|YP_003400420.1| - 0.087 13.1 0.1 0.18 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|284161797|ref|YP_003400420.1| - 0.094 12.3 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_18 PF13238.1 gi|284161797|ref|YP_003400420.1| - 0.096 12.9 0.4 0.32 11.3 0.2 1.9 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|284161797|ref|YP_003400420.1| - 0.11 12.1 0.3 0.36 10.4 0.1 1.8 1 1 1 2 2 2 0 NACHT domain MutS_V PF00488.16 gi|284161797|ref|YP_003400420.1| - 0.13 11.6 0.0 4.4 6.6 0.0 2.1 2 0 0 2 2 2 0 MutS domain V MacB_PCD PF12704.2 gi|284161798|ref|YP_003400421.1| - 1.4e-31 109.9 0.1 1.4e-31 109.9 0.1 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|284161798|ref|YP_003400421.1| - 4.5e-23 81.2 11.7 4.5e-23 81.2 8.1 2.2 2 0 0 2 2 2 1 FtsX-like permease family DUF2148 PF09918.4 gi|284161799|ref|YP_003400422.1| - 6e-31 105.9 0.6 1.1e-30 105.0 0.4 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|284161799|ref|YP_003400422.1| - 0.0039 16.7 2.1 0.0079 15.7 1.5 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster CbiX PF01903.12 gi|284161800|ref|YP_003400423.1| - 3.1e-13 49.7 0.0 4e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|284161800|ref|YP_003400423.1| - 0.0049 15.9 0.0 0.0062 15.6 0.0 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Resolvase PF00239.16 gi|284161800|ref|YP_003400423.1| - 0.087 12.6 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Resolvase, N terminal domain DUF3775 PF12616.3 gi|284161800|ref|YP_003400423.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3775) SHMT PF00464.14 gi|284161801|ref|YP_003400424.1| - 2.8e-79 266.3 0.0 3.7e-79 265.9 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|284161801|ref|YP_003400424.1| - 9.5e-10 38.0 0.0 1.6e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|284161801|ref|YP_003400424.1| - 5.6e-08 31.9 0.0 2e-07 30.1 0.0 1.8 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_1_2 PF00155.16 gi|284161801|ref|YP_003400424.1| - 1e-07 31.2 0.0 2.1e-07 30.2 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|284161801|ref|YP_003400424.1| - 7.4e-05 21.6 0.1 0.00012 20.9 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|284161801|ref|YP_003400424.1| - 0.0019 16.5 0.0 0.003 15.9 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Bactofilin PF04519.8 gi|284161802|ref|YP_003400425.1| - 5.2e-05 23.2 1.8 0.013 15.4 0.1 2.2 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|284161802|ref|YP_003400425.1| - 0.0018 17.6 4.6 1.2 8.7 0.0 4.0 4 1 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) DUF342 PF03961.8 gi|284161802|ref|YP_003400425.1| - 0.02 13.3 1.4 0.023 13.1 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Peptidase_M50 PF02163.17 gi|284161803|ref|YP_003400426.1| - 1.2e-17 63.4 5.0 1.2e-17 63.4 3.5 2.5 2 1 0 2 2 2 1 Peptidase family M50 DUF3040 PF11239.3 gi|284161803|ref|YP_003400426.1| - 3.2 7.8 7.0 16 5.6 0.1 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF3040) DUF126 PF01989.11 gi|284161804|ref|YP_003400427.1| - 3.7e-31 106.6 0.1 5.2e-31 106.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF126 2-Hacid_dh_C PF02826.14 gi|284161805|ref|YP_003400428.1| - 6.8e-70 233.8 0.0 1.3e-69 232.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|284161805|ref|YP_003400428.1| - 3.5e-43 146.2 1.4 7.3e-43 145.2 0.3 2.0 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|284161805|ref|YP_003400428.1| - 7e-10 38.1 0.0 3.1e-09 36.0 0.0 2.2 1 0 0 1 1 1 1 ACT domain NAD_binding_2 PF03446.10 gi|284161805|ref|YP_003400428.1| - 8.8e-06 25.6 0.2 2.3e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|284161805|ref|YP_003400428.1| - 5.5e-05 22.5 0.0 0.00012 21.4 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|284161805|ref|YP_003400428.1| - 0.00017 21.6 0.9 0.0054 16.8 0.0 2.6 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PYNP_C PF07831.8 gi|284161806|ref|YP_003400429.1| - 0.06 12.8 1.1 0.45 9.9 0.3 2.5 3 0 0 3 3 3 0 Pyrimidine nucleoside phosphorylase C-terminal domain Desulfoferrod_N PF06397.7 gi|284161806|ref|YP_003400429.1| - 0.069 12.5 0.1 0.22 10.9 0.1 1.9 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Apocytochr_F_C PF01333.14 gi|284161806|ref|YP_003400429.1| - 0.078 12.8 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 Apocytochrome F, C-terminal GTP_EFTU_D2 PF03144.20 gi|284161806|ref|YP_003400429.1| - 1.7 8.8 4.8 1.2 9.3 0.9 2.4 2 1 1 3 3 3 0 Elongation factor Tu domain 2 NTP_transf_2 PF01909.18 gi|284161807|ref|YP_003400430.1| - 0.0033 17.7 1.7 0.0057 16.9 0.4 2.1 2 1 0 2 2 2 1 Nucleotidyltransferase domain SIS PF01380.17 gi|284161808|ref|YP_003400431.1| - 1.5e-17 63.3 0.0 2.7e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|284161808|ref|YP_003400431.1| - 1.6e-09 37.6 1.2 6.6e-05 22.6 0.0 2.4 1 1 1 2 2 2 2 SIS domain DUF592 PF04574.8 gi|284161808|ref|YP_003400431.1| - 0.018 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF592) NTP_transferase PF00483.18 gi|284161809|ref|YP_003400432.1| - 2.9e-36 125.0 0.0 3.4e-36 124.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|284161809|ref|YP_003400432.1| - 2.1e-11 44.1 0.0 2.7e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|284161809|ref|YP_003400432.1| - 3.3e-06 26.3 7.6 0.0013 18.1 0.1 4.3 4 1 1 5 5 5 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284161809|ref|YP_003400432.1| - 0.0035 16.8 3.3 0.004 16.6 0.2 2.6 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase CTP_transf_3 PF02348.14 gi|284161809|ref|YP_003400432.1| - 0.0045 16.6 0.0 0.0071 15.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase NMD3 PF04981.8 gi|284161810|ref|YP_003400433.1| - 3.2e-53 180.2 1.0 4.2e-53 179.8 0.7 1.1 1 0 0 1 1 1 1 NMD3 family RsgI_N PF12791.2 gi|284161810|ref|YP_003400433.1| - 0.046 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Anti-sigma factor N-terminus DUF1644 PF07800.7 gi|284161810|ref|YP_003400433.1| - 0.088 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1644) Zn-ribbon_8 PF09723.5 gi|284161810|ref|YP_003400433.1| - 0.27 11.2 2.7 0.38 10.7 0.1 2.5 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|284161810|ref|YP_003400433.1| - 1.3 8.3 4.3 0.96 8.7 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain RecR PF02132.10 gi|284161810|ref|YP_003400433.1| - 8.1 5.9 7.6 45 3.5 0.1 3.3 3 0 0 3 3 3 0 RecR protein Met_10 PF02475.11 gi|284161811|ref|YP_003400434.1| - 1.4e-73 246.7 0.2 2e-73 246.2 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.12 gi|284161811|ref|YP_003400434.1| - 6.5e-05 22.0 0.0 0.00015 20.8 0.0 1.6 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_26 PF13659.1 gi|284161811|ref|YP_003400434.1| - 0.0003 20.7 0.0 0.00059 19.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284161811|ref|YP_003400434.1| - 0.001 19.5 0.0 0.003 18.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|284161811|ref|YP_003400434.1| - 0.002 17.5 0.0 0.0057 16.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|284161811|ref|YP_003400434.1| - 0.0022 17.5 0.0 0.0043 16.6 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|284161811|ref|YP_003400434.1| - 0.0059 15.3 0.0 0.0097 14.6 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.8 gi|284161811|ref|YP_003400434.1| - 0.006 15.7 0.0 0.0087 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|284161811|ref|YP_003400434.1| - 0.011 15.2 0.0 0.022 14.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|284161811|ref|YP_003400434.1| - 0.15 11.4 0.0 0.31 10.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 SIS PF01380.17 gi|284161812|ref|YP_003400435.1| - 1.9e-15 56.6 0.3 1.1e-14 54.1 0.2 2.0 1 1 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|284161812|ref|YP_003400435.1| - 3.5e-11 42.9 0.4 2.9e-07 30.2 0.1 2.2 1 1 1 2 2 2 2 SIS domain SpoIISA_toxin PF14171.1 gi|284161812|ref|YP_003400435.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Toxin SpoIISA, type II toxin-antitoxin system DUF2529 PF10740.4 gi|284161812|ref|YP_003400435.1| - 0.13 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2529) DUF63 PF01889.12 gi|284161813|ref|YP_003400436.1| - 5.4e-88 295.6 20.6 6e-88 295.4 14.3 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 CcmH PF03918.9 gi|284161813|ref|YP_003400436.1| - 0.043 12.8 3.6 3.1 6.7 0.1 2.5 2 0 0 2 2 2 0 Cytochrome C biogenesis protein TrmB PF01978.14 gi|284161814|ref|YP_003400437.1| - 0.022 14.4 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Nop PF01798.13 gi|284161815|ref|YP_003400438.1| - 2.8e-48 162.9 0.9 5.1e-48 162.1 0.6 1.4 1 0 0 1 1 1 1 Putative snoRNA binding domain Apolipoprotein PF01442.13 gi|284161815|ref|YP_003400438.1| - 0.00083 18.9 3.0 0.0023 17.4 0.3 2.2 2 0 0 2 2 2 1 Apolipoprotein A1/A4/E domain V_ATPase_I PF01496.14 gi|284161815|ref|YP_003400438.1| - 0.0047 14.8 1.1 0.0059 14.5 0.8 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family CAMP_factor PF07373.6 gi|284161815|ref|YP_003400438.1| - 0.02 14.3 0.3 0.028 13.9 0.2 1.2 1 0 0 1 1 1 0 CAMP factor (Cfa) CK2S PF15011.1 gi|284161815|ref|YP_003400438.1| - 0.035 13.9 0.9 0.16 11.7 0.4 2.0 1 1 1 2 2 2 0 Casein Kinase 2 substrate DUF342 PF03961.8 gi|284161815|ref|YP_003400438.1| - 0.054 11.9 4.7 0.036 12.4 2.2 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF342) NPV_P10 PF05531.7 gi|284161815|ref|YP_003400438.1| - 0.1 12.8 1.3 0.24 11.6 0.9 1.6 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein SSFA2_C PF14723.1 gi|284161815|ref|YP_003400438.1| - 0.23 11.1 3.1 0.28 10.8 1.5 1.5 1 1 0 1 1 1 0 Sperm-specific antigen 2 C-terminus Hemagglutinin PF00509.13 gi|284161815|ref|YP_003400438.1| - 0.3 9.1 1.0 0.42 8.6 0.7 1.1 1 0 0 1 1 1 0 Haemagglutinin DUF793 PF05633.6 gi|284161815|ref|YP_003400438.1| - 0.34 9.6 5.2 0.54 8.9 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF793) DASH_Duo1 PF08651.5 gi|284161815|ref|YP_003400438.1| - 0.46 10.0 2.2 0.5 9.9 0.3 2.0 2 1 0 2 2 2 0 DASH complex subunit Duo1 IncA PF04156.9 gi|284161815|ref|YP_003400438.1| - 0.55 9.8 6.1 0.065 12.8 1.3 1.6 2 0 0 2 2 2 0 IncA protein Snapin_Pallidin PF14712.1 gi|284161815|ref|YP_003400438.1| - 1 9.6 5.4 0.27 11.5 1.2 2.0 2 0 0 2 2 2 0 Snapin/Pallidin DUF2762 PF10960.3 gi|284161815|ref|YP_003400438.1| - 2 8.1 5.4 0.39 10.4 1.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2762) H-kinase_dim PF02895.9 gi|284161815|ref|YP_003400438.1| - 9.7 6.6 7.3 0.64 10.4 0.5 2.3 2 2 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain zf-like PF04071.7 gi|284161816|ref|YP_003400439.1| - 9.6e-26 89.3 7.8 1.6e-25 88.6 5.4 1.3 1 0 0 1 1 1 1 Cysteine-rich small domain DUF89 PF01937.14 gi|284161817|ref|YP_003400440.1| - 2.2e-52 178.0 0.2 2.4e-52 177.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 VirE PF05272.6 gi|284161817|ref|YP_003400440.1| - 0.018 14.5 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Virulence-associated protein E AMP-binding PF00501.23 gi|284161818|ref|YP_003400441.1| - 6.5e-98 327.8 0.0 7.8e-98 327.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284161818|ref|YP_003400441.1| - 2e-25 89.5 0.6 3.6e-25 88.6 0.4 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Kelch_4 PF13418.1 gi|284161818|ref|YP_003400441.1| - 0.18 11.6 1.0 0.49 10.2 0.2 2.0 2 0 0 2 2 2 0 Galactose oxidase, central domain UPF0182 PF03699.8 gi|284161819|ref|YP_003400442.1| - 1.1e-263 876.8 27.6 7.8e-263 873.9 19.2 1.8 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0182) Pribosyltran PF00156.22 gi|284161820|ref|YP_003400443.1| - 2.2e-15 56.5 0.1 4.5e-15 55.4 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain DUF4550 PF15084.1 gi|284161820|ref|YP_003400443.1| - 0.079 13.0 0.1 0.32 11.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4550) E1-E2_ATPase PF00122.15 gi|284161821|ref|YP_003400444.1| - 2.8e-76 255.5 7.1 2.8e-76 255.5 4.9 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|284161821|ref|YP_003400444.1| - 9.1e-37 126.3 12.2 9.1e-37 126.3 8.5 2.2 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|284161821|ref|YP_003400444.1| - 1.2e-35 123.8 0.3 2.7e-35 122.7 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284161821|ref|YP_003400444.1| - 6.4e-18 65.6 0.3 2.4e-17 63.7 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|284161821|ref|YP_003400444.1| - 7.3e-18 63.8 0.0 1.9e-17 62.4 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|284161821|ref|YP_003400444.1| - 6e-13 48.5 0.0 1.4e-12 47.3 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|284161821|ref|YP_003400444.1| - 6.8e-11 42.2 0.8 2.1e-06 27.5 0.2 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase AA_kinase PF00696.23 gi|284161822|ref|YP_003400445.1| - 3.2e-56 190.5 0.2 3.2e-56 190.5 0.2 1.8 2 1 0 2 2 2 1 Amino acid kinase family ACT PF01842.20 gi|284161822|ref|YP_003400445.1| - 2.6e-20 71.4 2.1 2.6e-10 39.5 0.0 2.9 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.1 gi|284161822|ref|YP_003400445.1| - 5.5e-20 70.6 2.9 1.9e-09 36.8 0.0 2.8 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.1 gi|284161822|ref|YP_003400445.1| - 0.055 13.1 2.4 1.2 8.9 0.0 3.0 3 0 0 3 3 3 0 ACT domain Abhydrolase_5 PF12695.2 gi|284161822|ref|YP_003400445.1| - 0.064 13.0 0.0 1 9.0 0.0 2.3 1 1 1 2 2 2 0 Alpha/beta hydrolase family DUF3213 PF11491.3 gi|284161823|ref|YP_003400446.1| - 0.15 11.9 2.0 0.45 10.4 1.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3213) Hepcidin PF06446.7 gi|284161823|ref|YP_003400446.1| - 0.41 11.1 4.9 0.13 12.7 0.9 1.9 2 0 0 2 2 2 0 Hepcidin DnaJ_CXXCXGXG PF00684.14 gi|284161823|ref|YP_003400446.1| - 10 6.2 8.5 29 4.8 0.4 2.6 2 1 0 2 2 2 0 DnaJ central domain Radical_SAM PF04055.16 gi|284161824|ref|YP_003400447.1| - 8.7e-18 65.0 0.0 1.4e-17 64.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284161824|ref|YP_003400447.1| - 5.2e-08 33.1 0.5 5.2e-08 33.1 0.4 1.8 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284161824|ref|YP_003400447.1| - 0.0021 18.0 0.5 0.0021 18.0 0.3 2.3 3 1 0 3 3 3 1 4Fe-4S single cluster domain Glutaredoxin PF00462.19 gi|284161824|ref|YP_003400447.1| - 0.036 14.0 0.0 0.036 14.0 0.0 2.2 3 0 0 3 3 3 0 Glutaredoxin zf-C4pol PF14260.1 gi|284161824|ref|YP_003400447.1| - 0.89 9.5 5.4 0.2 11.6 1.3 1.9 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta HSDR_N_2 PF13588.1 gi|284161825|ref|YP_003400448.1| - 0.00032 20.4 0.0 0.00053 19.7 0.0 1.4 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Fer4 PF00037.22 gi|284161826|ref|YP_003400449.1| - 3.1e-16 58.2 13.0 1.9e-10 39.8 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284161826|ref|YP_003400449.1| - 1.2e-13 50.2 11.5 1.2e-09 37.5 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284161826|ref|YP_003400449.1| - 1.6e-11 44.4 9.8 1.8e-05 25.0 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284161826|ref|YP_003400449.1| - 3.1e-11 43.3 37.8 5.7e-07 29.7 9.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284161826|ref|YP_003400449.1| - 2.8e-10 39.9 8.3 4.5e-10 39.2 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284161826|ref|YP_003400449.1| - 4e-10 39.0 11.8 5.1e-07 29.2 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284161826|ref|YP_003400449.1| - 4.7e-10 39.1 24.7 1.8e-06 27.6 9.3 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161826|ref|YP_003400449.1| - 2.3e-07 31.4 10.2 0.0014 19.2 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|284161826|ref|YP_003400449.1| - 6.3e-07 29.4 20.0 0.00031 21.0 5.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284161826|ref|YP_003400449.1| - 1.3e-06 28.3 25.2 5.1e-05 23.2 8.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284161826|ref|YP_003400449.1| - 2.9e-06 27.7 8.8 0.01 16.4 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|284161826|ref|YP_003400449.1| - 1.7e-05 24.7 18.7 0.0001 22.3 2.2 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284161826|ref|YP_003400449.1| - 0.00021 21.6 14.1 0.021 15.1 2.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284161826|ref|YP_003400449.1| - 0.00061 20.1 9.8 0.039 14.3 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284161826|ref|YP_003400449.1| - 0.0011 19.2 17.0 0.005 17.2 3.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|284161826|ref|YP_003400449.1| - 0.41 10.5 8.2 1.7 8.5 5.7 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Desulfoferrod_N PF06397.7 gi|284161826|ref|YP_003400449.1| - 1.3 8.4 17.5 0.49 9.8 1.5 2.5 2 1 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF1289 PF06945.8 gi|284161826|ref|YP_003400449.1| - 2.6 7.5 6.8 6 6.4 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1289) TNFR_c6 PF00020.13 gi|284161826|ref|YP_003400449.1| - 7.8 6.6 9.3 0.76 9.8 1.0 2.3 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region FAD_binding_3 PF01494.14 gi|284161827|ref|YP_003400450.1| - 5.7e-17 61.8 3.8 3.7e-12 45.9 0.4 3.1 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|284161827|ref|YP_003400450.1| - 3.8e-11 42.7 2.7 1.4e-10 40.8 1.9 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|284161827|ref|YP_003400450.1| - 4e-09 35.8 2.2 0.00035 19.5 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|284161827|ref|YP_003400450.1| - 4.4e-09 35.4 1.4 0.00048 18.8 0.1 2.9 2 1 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|284161827|ref|YP_003400450.1| - 4.1e-08 32.5 0.5 8.2e-08 31.5 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|284161827|ref|YP_003400450.1| - 2.9e-07 29.7 0.3 0.0034 16.3 0.3 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|284161827|ref|YP_003400450.1| - 1.1e-06 28.7 2.7 4.9e-06 26.5 1.8 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|284161827|ref|YP_003400450.1| - 2.2e-06 26.3 1.1 4.2e-06 25.4 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|284161827|ref|YP_003400450.1| - 3.8e-06 26.8 0.4 1.2e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|284161827|ref|YP_003400450.1| - 6.7e-05 23.0 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|284161827|ref|YP_003400450.1| - 8.8e-05 21.7 2.0 0.00012 21.2 0.1 2.2 2 1 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|284161827|ref|YP_003400450.1| - 0.00014 20.8 0.1 0.00027 19.9 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|284161827|ref|YP_003400450.1| - 0.0031 17.2 0.5 0.01 15.5 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HRDC PF00570.18 gi|284161827|ref|YP_003400450.1| - 0.015 15.0 0.1 2.6 7.8 0.0 2.7 2 0 0 2 2 2 0 HRDC domain NAD_binding_9 PF13454.1 gi|284161827|ref|YP_003400450.1| - 0.08 12.7 0.5 8 6.2 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|284161827|ref|YP_003400450.1| - 0.41 11.0 4.8 0.53 10.7 0.2 3.0 3 1 1 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase DUF3316 PF11777.3 gi|284161831|ref|YP_003400454.1| - 0.0032 17.2 0.2 0.0053 16.5 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3316) Chordopox_A33R PF05966.7 gi|284161831|ref|YP_003400454.1| - 0.044 12.5 0.4 0.058 12.1 0.3 1.2 1 0 0 1 1 1 0 Chordopoxvirus A33R protein T2SF PF00482.18 gi|284161834|ref|YP_003400457.1| - 2.5e-33 114.6 11.1 2e-18 66.5 0.1 3.5 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|284161835|ref|YP_003400458.1| - 2.3e-58 197.2 0.0 3.3e-58 196.7 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|284161835|ref|YP_003400458.1| - 0.00019 20.8 0.0 0.00046 19.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|284161835|ref|YP_003400458.1| - 0.018 14.5 0.2 1.1 8.6 0.0 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF1690 PF07956.6 gi|284161835|ref|YP_003400458.1| - 0.12 12.3 0.3 0.27 11.1 0.2 1.5 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) KaiC PF06745.8 gi|284161836|ref|YP_003400459.1| - 9.4e-09 34.7 0.0 1.9e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 KaiC RinB PF06116.7 gi|284161836|ref|YP_003400459.1| - 0.09 12.4 0.1 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional activator RinB UTP15_C PF09384.5 gi|284161836|ref|YP_003400459.1| - 0.14 11.8 0.1 0.25 11.0 0.1 1.4 1 0 0 1 1 1 0 UTP15 C terminal Radical_SAM PF04055.16 gi|284161837|ref|YP_003400460.1| - 1.6e-20 73.9 0.0 2.8e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284161837|ref|YP_003400460.1| - 3.5e-07 30.4 0.0 9.2e-07 29.0 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284161837|ref|YP_003400460.1| - 1.3e-05 25.2 0.0 2.4e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|284161837|ref|YP_003400460.1| - 2e-05 24.8 0.0 5.1e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Big_3 PF07523.7 gi|284161837|ref|YP_003400460.1| - 0.047 13.7 0.0 0.081 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) PrmA PF06325.8 gi|284161838|ref|YP_003400461.1| - 1.4e-13 50.6 0.2 1.9e-13 50.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|284161838|ref|YP_003400461.1| - 7.9e-13 48.1 0.0 1.1e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|284161838|ref|YP_003400461.1| - 8.4e-12 45.1 0.0 1.1e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|284161838|ref|YP_003400461.1| - 4.8e-09 36.0 0.0 6.6e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|284161838|ref|YP_003400461.1| - 5.1e-09 36.7 0.0 8.8e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284161838|ref|YP_003400461.1| - 1.7e-08 34.1 0.1 4.5e-08 32.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284161838|ref|YP_003400461.1| - 2.3e-05 24.1 0.0 0.00026 20.7 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|284161838|ref|YP_003400461.1| - 2.6e-05 23.8 0.0 3.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|284161838|ref|YP_003400461.1| - 3.3e-05 24.2 0.0 5.5e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284161838|ref|YP_003400461.1| - 3.5e-05 24.0 0.0 5.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|284161838|ref|YP_003400461.1| - 0.0012 18.4 0.0 0.0028 17.1 0.0 1.6 2 0 0 2 2 2 1 DNA methylase Methyltransf_12 PF08242.7 gi|284161838|ref|YP_003400461.1| - 0.0042 17.5 0.1 0.0085 16.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|284161838|ref|YP_003400461.1| - 0.0046 15.9 0.1 0.0069 15.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Cons_hypoth95 PF03602.10 gi|284161838|ref|YP_003400461.1| - 0.015 14.6 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_32 PF13679.1 gi|284161838|ref|YP_003400461.1| - 0.018 14.7 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|284161838|ref|YP_003400461.1| - 0.048 12.6 0.0 0.053 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TehB PF03848.9 gi|284161838|ref|YP_003400461.1| - 0.063 12.4 0.1 0.16 11.0 0.0 1.6 1 1 0 1 1 1 0 Tellurite resistance protein TehB RNA_pol_L_2 PF13656.1 gi|284161839|ref|YP_003400462.1| - 6.2e-26 89.6 0.3 7e-26 89.4 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|284161839|ref|YP_003400462.1| - 3.4e-08 32.4 0.0 4.3e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain STT3 PF02516.9 gi|284161840|ref|YP_003400463.1| - 1.2e-48 166.2 36.2 1.2e-48 166.2 25.1 2.3 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit ATPase_gene1 PF09527.5 gi|284161840|ref|YP_003400463.1| - 6.3 6.6 21.2 0.13 12.0 1.8 4.9 4 1 0 4 4 4 0 Putative F0F1-ATPase subunit (ATPase_gene1) RIO1 PF01163.17 gi|284161841|ref|YP_003400464.1| - 1e-38 132.5 0.2 1.6e-38 131.9 0.1 1.3 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|284161841|ref|YP_003400464.1| - 7.2e-10 38.8 0.1 1.3e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal Kdo PF06293.9 gi|284161841|ref|YP_003400464.1| - 9.4e-06 24.8 0.0 0.00013 21.0 0.0 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|284161841|ref|YP_003400464.1| - 5.5e-05 23.0 0.0 0.00022 21.0 0.0 1.8 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|284161841|ref|YP_003400464.1| - 0.00013 21.2 0.1 0.00022 20.4 0.0 1.5 1 0 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.15 gi|284161841|ref|YP_003400464.1| - 0.0091 15.5 1.6 0.78 9.2 1.1 3.3 1 1 0 1 1 1 1 Choline/ethanolamine kinase Phage_rep_O PF04492.8 gi|284161841|ref|YP_003400464.1| - 0.011 15.9 0.1 2.2 8.5 0.0 3.2 4 0 0 4 4 4 0 Bacteriophage replication protein O TrmB PF01978.14 gi|284161841|ref|YP_003400464.1| - 0.012 15.2 0.1 0.057 13.1 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|284161841|ref|YP_003400464.1| - 0.065 13.3 0.0 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator Mst1_SARAH PF11629.3 gi|284161843|ref|YP_003400466.1| - 0.011 15.5 4.9 0.016 15.0 3.4 1.3 1 1 0 1 1 1 0 C terminal SARAH domain of Mst1 FlaC_arch PF05377.6 gi|284161843|ref|YP_003400466.1| - 0.018 14.9 3.1 0.021 14.7 2.1 1.1 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) bZIP_1 PF00170.16 gi|284161843|ref|YP_003400466.1| - 0.021 14.7 4.6 0.024 14.5 3.2 1.0 1 0 0 1 1 1 0 bZIP transcription factor THOC7 PF05615.8 gi|284161843|ref|YP_003400466.1| - 0.022 15.0 3.9 0.024 14.8 2.7 1.0 1 0 0 1 1 1 0 Tho complex subunit 7 CENP-F_leu_zip PF10473.4 gi|284161843|ref|YP_003400466.1| - 0.039 13.8 4.7 0.045 13.5 3.3 1.0 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin_2 PF01920.15 gi|284161843|ref|YP_003400466.1| - 0.049 13.4 7.3 0.056 13.2 5.0 1.0 1 0 0 1 1 1 0 Prefoldin subunit IncA PF04156.9 gi|284161843|ref|YP_003400466.1| - 0.099 12.2 1.4 0.11 12.0 1.0 1.0 1 0 0 1 1 1 0 IncA protein TPR_MLP1_2 PF07926.7 gi|284161843|ref|YP_003400466.1| - 0.13 12.0 4.4 0.16 11.7 3.1 1.0 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein GnsAB PF08178.6 gi|284161843|ref|YP_003400466.1| - 0.15 11.7 4.4 0.24 11.0 3.0 1.3 1 0 0 1 1 1 0 GnsA/GnsB family IATP PF04568.7 gi|284161843|ref|YP_003400466.1| - 0.17 11.9 2.3 0.19 11.7 1.6 1.1 1 0 0 1 1 1 0 Mitochondrial ATPase inhibitor, IATP Nsp1_C PF05064.8 gi|284161843|ref|YP_003400466.1| - 0.29 10.7 2.3 0.34 10.5 1.6 1.1 1 0 0 1 1 1 0 Nsp1-like C-terminal region DivIC PF04977.10 gi|284161843|ref|YP_003400466.1| - 0.65 9.5 3.9 0.87 9.1 2.7 1.3 1 1 0 1 1 1 0 Septum formation initiator AAA_23 PF13476.1 gi|284161843|ref|YP_003400466.1| - 0.65 10.2 4.1 0.76 10.0 2.9 1.0 1 0 0 1 1 1 0 AAA domain Cir_N PF10197.4 gi|284161843|ref|YP_003400466.1| - 1.5 8.9 7.2 2.4 8.2 5.0 1.4 1 0 0 1 1 1 0 N-terminal domain of CBF1 interacting co-repressor CIR Pox_A_type_inc PF04508.7 gi|284161843|ref|YP_003400466.1| - 1.7 8.6 10.5 0.51 10.2 4.3 2.1 1 1 1 2 2 2 0 Viral A-type inclusion protein repeat Ribosomal_S26e PF01283.14 gi|284161844|ref|YP_003400467.1| - 2.4e-05 24.5 2.6 0.00011 22.4 1.8 1.8 1 1 0 1 1 1 1 Ribosomal protein S26e SprT-like PF10263.4 gi|284161844|ref|YP_003400467.1| - 0.0043 16.7 0.5 0.0053 16.4 0.4 1.1 1 0 0 1 1 1 1 SprT-like family PHD PF00628.24 gi|284161844|ref|YP_003400467.1| - 0.0052 16.4 0.5 2.4 7.9 0.1 2.2 2 0 0 2 2 2 2 PHD-finger DUF164 PF02591.10 gi|284161844|ref|YP_003400467.1| - 0.0074 16.0 0.7 0.71 9.7 0.1 2.2 2 0 0 2 2 2 1 Putative zinc ribbon domain DZR PF12773.2 gi|284161844|ref|YP_003400467.1| - 0.011 15.5 0.9 0.15 11.8 0.6 2.0 1 1 1 2 2 2 0 Double zinc ribbon Sgf11 PF08209.6 gi|284161844|ref|YP_003400467.1| - 0.054 12.8 2.5 2.1 7.7 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Terminase_GpA PF05876.7 gi|284161844|ref|YP_003400467.1| - 0.066 11.5 0.0 0.073 11.4 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-C2H2_4 PF13894.1 gi|284161844|ref|YP_003400467.1| - 0.079 13.3 0.9 4.4 7.8 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger C1_2 PF03107.11 gi|284161844|ref|YP_003400467.1| - 0.12 12.5 1.9 3 8.0 0.2 2.2 2 0 0 2 2 2 0 C1 domain Rsm1 PF08600.5 gi|284161844|ref|YP_003400467.1| - 0.15 11.8 0.3 1.3 8.9 0.0 2.0 2 0 0 2 2 2 0 Rsm1-like zf-FPG_IleRS PF06827.9 gi|284161844|ref|YP_003400467.1| - 0.18 11.4 2.2 0.31 10.7 0.1 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF581 PF04570.9 gi|284161844|ref|YP_003400467.1| - 0.28 10.4 1.3 0.79 9.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF581) zf-C2HC_2 PF13913.1 gi|284161844|ref|YP_003400467.1| - 0.42 10.3 5.4 0.68 9.6 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-ribbon_3 PF13248.1 gi|284161844|ref|YP_003400467.1| - 0.45 9.7 2.4 15 4.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF951 PF06107.6 gi|284161844|ref|YP_003400467.1| - 0.52 9.8 0.2 0.52 9.8 0.1 2.0 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-H2C2_2 PF13465.1 gi|284161844|ref|YP_003400467.1| - 0.82 10.0 3.0 3.7 8.0 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain ThiF PF00899.16 gi|284161845|ref|YP_003400468.1| - 3.2e-41 140.3 0.2 4.1e-41 139.9 0.1 1.1 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|284161845|ref|YP_003400468.1| - 1.8e-18 65.9 0.1 2.9e-18 65.2 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|284161845|ref|YP_003400468.1| - 5.1e-06 26.6 1.3 0.0001 22.4 0.9 2.1 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|284161845|ref|YP_003400468.1| - 0.0069 16.6 0.0 0.013 15.7 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ELFV_dehydrog PF00208.16 gi|284161845|ref|YP_003400468.1| - 0.067 12.7 0.1 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Gp_dh_C PF02800.15 gi|284161846|ref|YP_003400469.1| - 5.6e-28 97.3 0.1 8.1e-28 96.8 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|284161846|ref|YP_003400469.1| - 1e-25 90.4 0.7 2.2e-25 89.3 0.5 1.6 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|284161846|ref|YP_003400469.1| - 2.1e-11 43.7 0.7 4.2e-11 42.8 0.3 1.6 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|284161846|ref|YP_003400469.1| - 2.1e-05 24.8 0.0 5.2e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|284161846|ref|YP_003400469.1| - 0.0001 22.6 0.0 0.00032 21.0 0.0 1.9 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|284161846|ref|YP_003400469.1| - 0.00016 20.8 0.5 0.013 14.6 0.1 3.0 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|284161846|ref|YP_003400469.1| - 0.0061 16.5 0.0 0.017 15.1 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|284161846|ref|YP_003400469.1| - 0.01 14.8 0.2 0.023 13.7 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|284161846|ref|YP_003400469.1| - 0.045 14.2 0.0 0.14 12.7 0.0 1.9 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|284161846|ref|YP_003400469.1| - 0.052 13.9 0.5 0.27 11.6 0.0 2.4 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent TauE PF01925.14 gi|284161847|ref|YP_003400470.1| - 1.1e-37 129.8 27.9 1.2e-37 129.6 19.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2244 PF10003.4 gi|284161847|ref|YP_003400470.1| - 4.4 6.6 7.7 0.5 9.7 0.1 2.5 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) Metallophos_2 PF12850.2 gi|284161848|ref|YP_003400471.1| - 1.4e-10 41.2 0.0 3e-10 40.1 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|284161848|ref|YP_003400471.1| - 1.1e-05 24.7 0.3 4.8e-05 22.6 0.2 2.0 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|284161848|ref|YP_003400471.1| - 1.9e-05 24.1 0.9 9e-05 21.9 0.7 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase SUD-M PF11633.3 gi|284161848|ref|YP_003400471.1| - 0.0091 15.2 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 Single-stranded poly(A) binding domain DSRB PF10781.4 gi|284161848|ref|YP_003400471.1| - 0.043 13.3 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 Dextransucrase DSRB Zn_Tnp_IS1 PF03811.8 gi|284161852|ref|YP_003400475.1| - 0.013 14.9 0.3 0.013 14.9 0.2 1.4 2 0 0 2 2 2 0 InsA N-terminal domain Zn-ribbon_8 PF09723.5 gi|284161852|ref|YP_003400475.1| - 0.014 15.3 1.9 0.023 14.6 1.3 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|284161852|ref|YP_003400475.1| - 0.043 13.0 0.1 0.061 12.5 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284161852|ref|YP_003400475.1| - 0.058 12.9 0.4 0.097 12.1 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284161852|ref|YP_003400475.1| - 0.065 12.5 0.2 0.12 11.7 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.14 gi|284161852|ref|YP_003400475.1| - 0.07 12.8 0.0 0.07 12.8 0.0 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Ogr_Delta PF04606.7 gi|284161852|ref|YP_003400475.1| - 0.089 12.4 1.2 1.1 8.9 0.1 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|284161852|ref|YP_003400475.1| - 0.12 11.9 0.3 0.12 11.9 0.2 1.6 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prim_Zn_Ribbon PF08273.7 gi|284161852|ref|YP_003400475.1| - 0.12 12.4 0.5 0.15 12.1 0.1 1.4 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase TFIIS_C PF01096.13 gi|284161852|ref|YP_003400475.1| - 0.12 11.9 0.7 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|284161852|ref|YP_003400475.1| - 0.13 12.0 0.5 0.18 11.6 0.0 1.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|284161852|ref|YP_003400475.1| - 0.14 11.6 0.2 0.16 11.4 0.1 1.2 1 0 0 1 1 1 0 Cysteine-rich KTR Ribosomal_S27e PF01667.12 gi|284161852|ref|YP_003400475.1| - 0.16 11.4 0.6 0.2 11.2 0.2 1.4 1 1 0 1 1 1 0 Ribosomal protein S27 PhnA_Zn_Ribbon PF08274.7 gi|284161852|ref|YP_003400475.1| - 0.29 10.9 3.3 0.15 11.9 1.3 1.5 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.1 gi|284161852|ref|YP_003400475.1| - 0.31 11.4 5.0 1.8 9.0 1.1 2.2 1 1 1 2 2 2 0 Zinc-finger double domain Peptidase_M48 PF01435.13 gi|284161853|ref|YP_003400476.1| - 3.1e-55 187.1 0.1 3.1e-55 187.1 0.1 1.5 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|284161853|ref|YP_003400476.1| - 0.00018 20.5 0.6 0.00018 20.5 0.4 2.0 1 1 1 2 2 2 1 BlaR1 peptidase M56 DUF2530 PF10745.4 gi|284161853|ref|YP_003400476.1| - 1.8 8.6 4.2 14 5.7 1.7 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) DUF360 PF04020.8 gi|284161853|ref|YP_003400476.1| - 5 7.5 22.6 0.19 12.0 9.3 2.7 3 0 0 3 3 3 0 Membrane protein of unknown function DUF3040 PF11239.3 gi|284161853|ref|YP_003400476.1| - 5.8 7.0 13.5 1.8 8.6 3.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3040) Radical_SAM PF04055.16 gi|284161855|ref|YP_003400478.1| - 7.7e-22 78.2 2.5 3.1e-21 76.2 0.0 3.0 4 0 0 4 4 4 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|284161855|ref|YP_003400478.1| - 1.6e-08 34.4 0.2 5.8e-08 32.6 0.1 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284161855|ref|YP_003400478.1| - 0.009 16.1 0.8 0.037 14.1 0.5 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284161855|ref|YP_003400478.1| - 0.1 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FbpA PF05833.6 gi|284161856|ref|YP_003400479.1| - 2.2e-86 290.2 12.8 4e-86 289.3 8.9 1.4 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|284161856|ref|YP_003400479.1| - 4.3e-26 90.6 0.0 9.7e-26 89.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) H2TH PF06831.9 gi|284161856|ref|YP_003400479.1| - 0.0012 18.6 0.0 0.0035 17.0 0.0 1.8 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Ribosomal_S13 PF00416.17 gi|284161856|ref|YP_003400479.1| - 0.031 14.7 4.4 0.1 13.0 0.2 3.3 2 1 0 2 2 2 0 Ribosomal protein S13/S18 DUF45 PF01863.12 gi|284161856|ref|YP_003400479.1| - 1.1 9.0 6.2 1.8 8.3 3.3 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF45 DUF1664 PF07889.7 gi|284161856|ref|YP_003400479.1| - 3.6 7.3 5.7 0.85 9.4 0.4 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) HMGL-like PF00682.14 gi|284161857|ref|YP_003400480.1| - 2.3e-83 279.4 0.3 3.7e-83 278.8 0.2 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|284161857|ref|YP_003400480.1| - 1.6e-33 115.3 2.2 1.6e-33 115.3 1.5 2.1 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain Ribosomal_S11 PF00411.14 gi|284161857|ref|YP_003400480.1| - 0.048 13.8 0.2 4.7 7.4 0.1 3.1 2 0 0 2 2 2 0 Ribosomal protein S11 NYN PF01936.13 gi|284161858|ref|YP_003400481.1| - 8.6e-24 84.4 0.4 1.2e-23 84.0 0.3 1.1 1 0 0 1 1 1 1 NYN domain iPGM_N PF06415.8 gi|284161858|ref|YP_003400481.1| - 0.025 13.9 0.1 0.031 13.6 0.1 1.2 1 0 0 1 1 1 0 BPG-independent PGAM N-terminus (iPGM_N) Pilus_CpaD PF09476.5 gi|284161858|ref|YP_003400481.1| - 0.041 13.3 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) OMPdecase PF00215.19 gi|284161859|ref|YP_003400482.1| - 7.8e-38 130.1 0.5 1.5e-37 129.1 0.3 1.4 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|284161859|ref|YP_003400482.1| - 0.00025 20.3 1.0 0.029 13.6 0.1 2.2 1 1 1 2 2 2 2 PcrB family TatD_DNase PF01026.16 gi|284161859|ref|YP_003400482.1| - 0.071 12.2 0.0 3.3 6.8 0.0 2.2 1 1 1 2 2 2 0 TatD related DNase TRAM PF01938.15 gi|284161860|ref|YP_003400483.1| - 4.4e-15 55.2 4.9 4.8e-15 55.0 3.4 1.0 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.19 gi|284161860|ref|YP_003400483.1| - 0.09 12.3 0.4 0.2 11.2 0.2 1.6 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) S1 PF00575.18 gi|284161860|ref|YP_003400483.1| - 7.8 6.6 8.1 0.78 9.8 0.8 2.2 1 1 0 2 2 2 0 S1 RNA binding domain Tetraspannin PF00335.15 gi|284161861|ref|YP_003400484.1| - 0.079 12.2 15.6 0.21 10.8 10.8 1.6 1 1 0 1 1 1 0 Tetraspanin family DUF308 PF03729.8 gi|284161861|ref|YP_003400484.1| - 0.47 10.4 24.8 3.2 7.7 1.8 3.2 2 1 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF202 PF02656.10 gi|284161861|ref|YP_003400484.1| - 2.3 8.4 4.8 10 6.4 3.3 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF4131 PF13567.1 gi|284161861|ref|YP_003400484.1| - 4.1 6.7 10.2 1.9 7.8 2.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF4282 PF14110.1 gi|284161861|ref|YP_003400484.1| - 7.9 6.7 15.1 2 8.6 0.1 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) DUF3188 PF11384.3 gi|284161861|ref|YP_003400484.1| - 8.2 6.0 15.1 3.1 7.4 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) MreB_Mbl PF06723.8 gi|284161862|ref|YP_003400485.1| - 2.3e-08 33.0 0.1 0.0015 17.1 0.0 2.3 3 0 0 3 3 3 2 MreB/Mbl protein Rad60-SLD PF11976.3 gi|284161863|ref|YP_003400486.1| - 0.0031 17.1 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 Ubiquitin-2 like Rad60 SUMO-like AAA PF00004.24 gi|284161864|ref|YP_003400487.1| - 4.7e-40 136.8 0.0 1e-39 135.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|284161864|ref|YP_003400487.1| - 9.4e-09 34.6 0.0 8.7e-08 31.4 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|284161864|ref|YP_003400487.1| - 9.7e-09 35.3 0.0 2.4e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|284161864|ref|YP_003400487.1| - 3e-07 29.5 0.0 5.1e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus AAA_17 PF13207.1 gi|284161864|ref|YP_003400487.1| - 5.3e-07 30.4 0.0 1.4e-06 29.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|284161864|ref|YP_003400487.1| - 3.3e-05 22.9 0.0 7.5e-05 21.7 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|284161864|ref|YP_003400487.1| - 3.4e-05 24.0 0.1 0.00037 20.6 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284161864|ref|YP_003400487.1| - 5.4e-05 23.2 0.0 0.00079 19.4 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|284161864|ref|YP_003400487.1| - 5.5e-05 22.9 0.0 0.00031 20.4 0.0 2.4 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|284161864|ref|YP_003400487.1| - 0.00012 22.1 0.0 0.0011 18.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|284161864|ref|YP_003400487.1| - 0.00018 20.7 0.0 0.00051 19.2 0.0 1.7 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|284161864|ref|YP_003400487.1| - 0.00031 20.2 0.0 0.00058 19.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|284161864|ref|YP_003400487.1| - 0.00076 19.3 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|284161864|ref|YP_003400487.1| - 0.0012 18.3 0.7 0.14 11.4 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284161864|ref|YP_003400487.1| - 0.0024 18.1 0.0 0.0063 16.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|284161864|ref|YP_003400487.1| - 0.0029 17.2 0.0 0.0047 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|284161864|ref|YP_003400487.1| - 0.0055 15.8 0.0 0.011 14.7 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.1 gi|284161864|ref|YP_003400487.1| - 0.0059 16.4 0.0 0.01 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|284161864|ref|YP_003400487.1| - 0.0081 15.8 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain RNA_helicase PF00910.17 gi|284161864|ref|YP_003400487.1| - 0.017 15.3 0.0 0.036 14.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Ribosomal_L7Ae PF01248.21 gi|284161864|ref|YP_003400487.1| - 0.024 14.1 0.8 0.19 11.2 0.0 2.4 3 0 0 3 3 2 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Sigma54_activat PF00158.21 gi|284161864|ref|YP_003400487.1| - 0.025 14.0 0.0 0.075 12.4 0.0 1.9 2 1 0 2 2 2 0 Sigma-54 interaction domain SKI PF01202.17 gi|284161864|ref|YP_003400487.1| - 0.034 14.0 0.0 0.071 12.9 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase T2SE PF00437.15 gi|284161864|ref|YP_003400487.1| - 0.035 13.0 0.0 0.068 12.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2002 PF09400.5 gi|284161864|ref|YP_003400487.1| - 0.041 13.6 0.0 0.083 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2002) Bac_DnaA PF00308.13 gi|284161864|ref|YP_003400487.1| - 0.045 13.3 0.1 0.12 12.0 0.1 1.7 1 1 0 1 1 1 0 Bacterial dnaA protein Parvo_NS1 PF01057.12 gi|284161864|ref|YP_003400487.1| - 0.054 12.3 0.0 0.093 11.5 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DNA_pol3_delta2 PF13177.1 gi|284161864|ref|YP_003400487.1| - 0.055 13.1 0.1 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 DNA polymerase III, delta subunit IPT PF01745.11 gi|284161864|ref|YP_003400487.1| - 0.076 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase AAA_11 PF13086.1 gi|284161864|ref|YP_003400487.1| - 0.085 12.4 0.0 0.25 10.8 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|284161864|ref|YP_003400487.1| - 0.095 12.3 0.0 0.2 11.2 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|284161864|ref|YP_003400487.1| - 0.096 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Torsin PF06309.6 gi|284161864|ref|YP_003400487.1| - 0.12 12.2 0.0 0.41 10.5 0.0 1.8 2 0 0 2 2 2 0 Torsin NACHT PF05729.7 gi|284161864|ref|YP_003400487.1| - 0.13 11.9 0.0 0.6 9.7 0.0 2.0 1 1 1 2 2 2 0 NACHT domain ANF_receptor PF01094.23 gi|284161864|ref|YP_003400487.1| - 0.17 10.6 0.0 0.26 10.0 0.0 1.2 1 0 0 1 1 1 0 Receptor family ligand binding region Na_H_Exchanger PF00999.16 gi|284161865|ref|YP_003400488.1| - 3.1e-36 124.7 38.3 3.8e-36 124.4 26.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CENP-O PF09496.5 gi|284161865|ref|YP_003400488.1| - 0.056 13.6 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Cenp-O kinetochore centromere component PetG PF02529.10 gi|284161865|ref|YP_003400488.1| - 9.7 5.8 7.2 1.9 8.0 1.0 2.6 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 TrkA_C PF02080.16 gi|284161866|ref|YP_003400489.1| - 1.3e-19 69.5 0.3 2.3e-19 68.7 0.2 1.4 1 0 0 1 1 1 1 TrkA-C domain DUF3006 PF11213.3 gi|284161866|ref|YP_003400489.1| - 0.0021 17.7 0.2 0.37 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF3006) FluMu_gp41 PF10109.4 gi|284161866|ref|YP_003400489.1| - 0.0025 17.7 0.0 0.0051 16.6 0.0 1.6 1 0 0 1 1 1 1 Mu-like prophage FluMu protein gp41 KH_1 PF00013.24 gi|284161866|ref|YP_003400489.1| - 0.0043 16.6 0.8 0.0094 15.5 0.2 1.8 2 0 0 2 2 2 1 KH domain SH3_2 PF07653.12 gi|284161866|ref|YP_003400489.1| - 0.11 11.9 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 Variant SH3 domain DUF599 PF04654.7 gi|284161867|ref|YP_003400490.1| - 6.8e-26 90.7 6.2 7.9e-26 90.5 4.3 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF599 DUF3263 PF11662.3 gi|284161867|ref|YP_003400490.1| - 0.079 12.4 0.2 0.26 10.7 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3263) TFIID_30kDa PF03540.8 gi|284161867|ref|YP_003400490.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.6 1 1 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit NdhM PF10664.4 gi|284161867|ref|YP_003400490.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Cyanobacterial and plastid NDH-1 subunit M Pribosyltran_N PF13793.1 gi|284161868|ref|YP_003400491.1| - 1.8e-24 85.6 0.8 1.3e-20 73.3 0.0 3.1 2 1 0 3 3 3 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|284161868|ref|YP_003400491.1| - 1e-14 54.3 2.6 8.3e-14 51.3 0.4 3.0 3 1 0 3 3 3 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|284161868|ref|YP_003400491.1| - 2.6e-08 33.8 2.2 2.6e-08 33.8 1.5 1.6 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|284161868|ref|YP_003400491.1| - 5.4e-06 25.7 0.6 9.6e-06 24.9 0.4 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PduV-EutP PF10662.4 gi|284161868|ref|YP_003400491.1| - 0.0029 17.1 0.1 0.0068 15.9 0.1 1.6 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation PRTase_2 PF15609.1 gi|284161868|ref|YP_003400491.1| - 0.004 16.4 0.1 0.0063 15.8 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase MFS_1_like PF12832.2 gi|284161868|ref|YP_003400491.1| - 0.16 11.7 0.0 0.63 9.8 0.0 1.9 2 0 0 2 2 2 0 MFS_1 like family tRNA-synt_2b PF00587.20 gi|284161870|ref|YP_003400493.1| - 3.9e-24 85.1 0.5 2.9e-23 82.3 0.2 2.2 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|284161870|ref|YP_003400493.1| - 1e-18 67.0 0.1 3.1e-18 65.4 0.0 1.9 1 1 1 2 2 2 1 Anticodon binding domain ATP_bind_3 PF01171.15 gi|284161871|ref|YP_003400494.1| - 1.7e-13 50.5 0.0 2.4e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|284161871|ref|YP_003400494.1| - 1e-05 25.3 0.0 2.8e-05 24.0 0.0 1.7 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|284161871|ref|YP_003400494.1| - 4.6e-05 22.7 0.3 4.6e-05 22.7 0.2 2.8 3 0 0 3 3 3 1 RecR protein QueC PF06508.8 gi|284161871|ref|YP_003400494.1| - 5.7e-05 22.4 0.0 0.0001 21.6 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|284161871|ref|YP_003400494.1| - 0.00074 19.0 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|284161871|ref|YP_003400494.1| - 0.00091 18.1 0.1 0.0014 17.5 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ThiI PF02568.9 gi|284161871|ref|YP_003400494.1| - 0.0022 17.4 0.8 0.022 14.2 0.0 2.1 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|284161871|ref|YP_003400494.1| - 0.011 14.2 0.1 0.023 13.2 0.0 1.5 2 0 0 2 2 2 0 tRNA methyl transferase DUF2312 PF10073.4 gi|284161871|ref|YP_003400494.1| - 0.048 13.0 0.2 0.17 11.2 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) KH_1 PF00013.24 gi|284161872|ref|YP_003400495.1| - 1.6e-21 75.7 9.3 2.9e-12 46.0 1.9 2.6 2 1 1 3 3 3 2 KH domain KH_3 PF13014.1 gi|284161872|ref|YP_003400495.1| - 9.6e-10 37.8 6.9 3.5e-06 26.5 2.5 3.0 3 1 0 3 3 3 2 KH domain KH_2 PF07650.12 gi|284161872|ref|YP_003400495.1| - 8e-06 25.3 10.0 0.012 15.1 2.2 2.8 2 2 1 3 3 3 2 KH domain KH_4 PF13083.1 gi|284161872|ref|YP_003400495.1| - 7.9e-05 22.2 6.0 0.096 12.3 0.1 3.3 3 1 0 3 3 3 2 KH domain BON PF04972.12 gi|284161872|ref|YP_003400495.1| - 0.009 15.7 0.4 0.035 13.8 0.1 2.0 2 0 0 2 2 2 1 BON domain KH_5 PF13184.1 gi|284161872|ref|YP_003400495.1| - 0.019 14.7 4.8 2 8.2 0.8 2.4 2 0 0 2 2 2 0 NusA-like KH domain Phe_tRNA-synt_N PF02912.13 gi|284161872|ref|YP_003400495.1| - 0.097 12.4 1.2 1.1 9.0 0.0 2.7 3 0 0 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain RIO1 PF01163.17 gi|284161873|ref|YP_003400496.1| - 1.1e-61 207.5 0.3 1.1e-61 207.5 0.2 1.4 2 0 0 2 2 2 1 RIO1 family Kdo PF06293.9 gi|284161873|ref|YP_003400496.1| - 0.00023 20.2 0.0 0.6 9.1 0.0 2.3 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|284161873|ref|YP_003400496.1| - 0.0087 15.8 0.0 0.1 12.3 0.0 2.1 1 1 0 2 2 2 1 Phosphotransferase enzyme family POR PF01558.13 gi|284161874|ref|YP_003400497.1| - 4.5e-35 121.0 0.1 6.3e-35 120.6 0.1 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4_6 PF12837.2 gi|284161875|ref|YP_003400498.1| - 6.5e-12 44.7 18.4 1.4e-06 27.8 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|284161875|ref|YP_003400498.1| - 2.1e-11 42.9 20.2 3.2e-08 32.8 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284161875|ref|YP_003400498.1| - 6.2e-11 41.9 24.8 5.8e-07 29.2 10.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284161875|ref|YP_003400498.1| - 9.5e-10 38.1 13.7 1.5e-09 37.5 9.5 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284161875|ref|YP_003400498.1| - 2.2e-09 37.5 13.6 3.1e-09 37.0 9.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284161875|ref|YP_003400498.1| - 7.2e-09 35.0 12.5 1.3e-05 24.8 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284161875|ref|YP_003400498.1| - 1.6e-08 34.6 7.6 0.00051 20.2 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284161875|ref|YP_003400498.1| - 1.8e-06 28.5 12.7 0.0019 18.8 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|284161875|ref|YP_003400498.1| - 4.7e-05 23.6 8.4 0.033 14.5 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284161875|ref|YP_003400498.1| - 7e-05 22.7 14.3 0.023 14.7 2.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284161875|ref|YP_003400498.1| - 0.00057 20.0 18.4 0.01 16.0 2.7 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284161875|ref|YP_003400498.1| - 0.0067 16.8 14.4 0.1 13.0 2.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284161875|ref|YP_003400498.1| - 0.012 16.2 14.0 0.035 14.6 0.9 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|284161875|ref|YP_003400498.1| - 0.044 14.1 12.8 0.16 12.3 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|284161875|ref|YP_003400498.1| - 0.15 12.6 7.0 0.15 12.6 4.8 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|284161876|ref|YP_003400499.1| - 4.9e-68 229.0 0.4 6.1e-68 228.7 0.3 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|284161876|ref|YP_003400499.1| - 0.0075 16.2 0.0 0.028 14.3 0.0 2.0 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|284161877|ref|YP_003400500.1| - 9.8e-20 70.6 0.6 1.6e-19 69.9 0.1 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|284161877|ref|YP_003400500.1| - 0.013 14.4 0.0 0.016 14.1 0.0 1.1 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase HMGL-like PF00682.14 gi|284161878|ref|YP_003400501.1| - 5e-70 235.8 1.3 1.4e-69 234.3 0.4 2.0 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|284161878|ref|YP_003400501.1| - 2.1e-20 72.8 5.4 4.7e-10 39.3 0.2 3.2 3 1 1 4 4 4 2 LeuA allosteric (dimerisation) domain CDP-OH_P_transf PF01066.16 gi|284161879|ref|YP_003400502.1| - 1.1e-19 70.6 1.9 1.1e-19 70.6 1.3 2.4 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase NTP_transf_3 PF12804.2 gi|284161879|ref|YP_003400502.1| - 9.2e-17 61.5 0.0 1.4e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|284161879|ref|YP_003400502.1| - 5.5e-10 38.9 0.0 1.2e-08 34.6 0.0 2.1 2 0 0 2 2 2 1 Nucleotidyl transferase IspD PF01128.14 gi|284161879|ref|YP_003400502.1| - 0.00012 21.6 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Propep_M14 PF02244.11 gi|284161879|ref|YP_003400502.1| - 0.02 14.5 0.1 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 Carboxypeptidase activation peptide Redoxin PF08534.5 gi|284161879|ref|YP_003400502.1| - 0.15 11.5 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 Redoxin TraL PF07178.6 gi|284161879|ref|YP_003400502.1| - 9.3 6.3 8.8 2.7 8.0 0.5 2.8 3 0 0 3 3 3 0 TraL protein Bystin PF05291.6 gi|284161880|ref|YP_003400503.1| - 0.021 13.7 0.0 0.021 13.7 0.0 1.1 1 0 0 1 1 1 0 Bystin DUF1136 PF06582.7 gi|284161880|ref|YP_003400503.1| - 0.25 11.0 0.8 0.43 10.3 0.5 1.3 1 0 0 1 1 1 0 Repeat of unknown function (DUF1136) OrfB_Zn_ribbon PF07282.6 gi|284161881|ref|YP_003400504.1| - 4e-27 93.6 0.2 9.5e-27 92.4 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|284161881|ref|YP_003400504.1| - 2.1e-11 43.6 3.1 2.1e-11 43.6 2.1 1.8 1 1 0 1 1 1 1 Probable transposase zf-ribbon_3 PF13248.1 gi|284161881|ref|YP_003400504.1| - 0.018 14.2 0.4 1.5 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain FYVE PF01363.16 gi|284161881|ref|YP_003400504.1| - 0.028 14.3 0.6 0.063 13.1 0.4 1.5 1 0 0 1 1 1 0 FYVE zinc finger DZR PF12773.2 gi|284161881|ref|YP_003400504.1| - 0.028 14.2 0.3 0.052 13.3 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon IBR PF01485.16 gi|284161881|ref|YP_003400504.1| - 0.038 13.8 0.2 0.12 12.2 0.2 1.9 1 0 0 1 1 1 0 IBR domain zinc_ribbon_2 PF13240.1 gi|284161881|ref|YP_003400504.1| - 0.042 13.3 3.5 1.2 8.7 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF2325 PF10087.4 gi|284161881|ref|YP_003400504.1| - 0.061 13.1 2.1 3.3 7.6 0.1 2.9 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) zf-C2H2_3 PF13878.1 gi|284161881|ref|YP_003400504.1| - 0.069 12.7 1.9 0.31 10.6 0.1 2.4 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO TF_Zn_Ribbon PF08271.7 gi|284161881|ref|YP_003400504.1| - 0.12 11.7 2.0 2.5 7.5 1.5 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|284161881|ref|YP_003400504.1| - 0.18 11.5 4.3 2.1 8.1 3.4 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NTPase_I-T PF01931.13 gi|284161882|ref|YP_003400505.1| - 3.3e-49 166.8 0.0 3.7e-49 166.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 AAA PF00004.24 gi|284161883|ref|YP_003400506.1| - 3.5e-14 53.1 3.7 5.2e-14 52.5 0.0 3.0 4 0 0 4 4 4 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|284161883|ref|YP_003400506.1| - 3.1e-13 49.2 0.3 2.9e-06 26.2 0.0 3.1 3 0 0 3 3 3 2 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|284161883|ref|YP_003400506.1| - 4.5e-07 29.1 1.6 0.0065 15.5 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin DNA_pol3_delta PF06144.8 gi|284161883|ref|YP_003400506.1| - 8.7e-07 28.6 0.1 8.7e-07 28.6 0.0 2.2 3 0 0 3 3 2 1 DNA polymerase III, delta subunit AAA_14 PF13173.1 gi|284161883|ref|YP_003400506.1| - 4.4e-06 26.6 0.3 2.7e-05 24.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|284161883|ref|YP_003400506.1| - 9.2e-06 24.8 0.0 6.8e-05 22.0 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|284161883|ref|YP_003400506.1| - 1.5e-05 24.4 0.0 4.2e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|284161883|ref|YP_003400506.1| - 1.7e-05 24.5 0.0 6.4e-05 22.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|284161883|ref|YP_003400506.1| - 1.8e-05 25.5 0.0 1.8e-05 25.5 0.0 3.4 2 2 1 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|284161883|ref|YP_003400506.1| - 2.1e-05 24.6 0.0 0.00031 20.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|284161883|ref|YP_003400506.1| - 0.0021 17.9 0.0 0.013 15.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284161883|ref|YP_003400506.1| - 0.0051 16.2 0.2 0.024 14.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|284161883|ref|YP_003400506.1| - 0.0064 16.4 0.8 0.033 14.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|284161883|ref|YP_003400506.1| - 0.0076 15.0 10.1 0.022 13.4 0.0 3.2 3 0 0 3 3 2 2 TIP49 C-terminus AAA_18 PF13238.1 gi|284161883|ref|YP_003400506.1| - 0.0081 16.4 0.1 0.0081 16.4 0.1 3.4 3 2 0 3 3 2 1 AAA domain AAA_16 PF13191.1 gi|284161883|ref|YP_003400506.1| - 0.016 15.2 4.1 0.024 14.6 0.8 2.6 2 1 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|284161883|ref|YP_003400506.1| - 0.025 14.3 0.0 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|284161883|ref|YP_003400506.1| - 0.032 13.9 0.7 1.3 8.6 0.5 2.4 1 1 0 1 1 1 0 NACHT domain GAGA_bind PF06217.7 gi|284161883|ref|YP_003400506.1| - 0.088 12.7 3.7 0.13 12.1 2.6 1.2 1 0 0 1 1 1 0 GAGA binding protein-like family Transketolase_N PF00456.16 gi|284161883|ref|YP_003400506.1| - 3.8 6.2 5.7 17 4.0 3.5 2.0 2 0 0 2 2 2 0 Transketolase, thiamine diphosphate binding domain Trm112p PF03966.11 gi|284161884|ref|YP_003400507.1| - 4.3e-12 46.2 1.3 7.4e-12 45.4 0.9 1.4 1 1 0 1 1 1 1 Trm112p-like protein Lar_restr_allev PF14354.1 gi|284161884|ref|YP_003400507.1| - 4.9e-05 23.5 0.1 6.1e-05 23.2 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.7 gi|284161884|ref|YP_003400507.1| - 9.3e-05 22.4 0.0 0.00012 22.1 0.0 1.1 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase TF_Zn_Ribbon PF08271.7 gi|284161884|ref|YP_003400507.1| - 0.00084 18.6 4.1 0.0091 15.3 2.8 2.1 1 1 0 1 1 1 1 TFIIB zinc-binding Elf1 PF05129.8 gi|284161884|ref|YP_003400507.1| - 0.0026 17.4 0.0 0.0028 17.3 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like RRN7 PF11781.3 gi|284161884|ref|YP_003400507.1| - 0.009 15.4 0.5 0.06 12.8 0.3 2.1 1 1 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2387 PF09526.5 gi|284161884|ref|YP_003400507.1| - 0.02 14.8 0.2 0.021 14.7 0.1 1.1 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Rubredoxin PF00301.15 gi|284161884|ref|YP_003400507.1| - 0.021 14.6 0.2 2.9 7.8 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin RNA_POL_M_15KD PF02150.11 gi|284161884|ref|YP_003400507.1| - 0.06 13.0 0.5 0.24 11.0 0.1 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Cys_rich_KTR PF14205.1 gi|284161884|ref|YP_003400507.1| - 0.095 12.1 0.8 0.17 11.3 0.5 1.4 1 1 0 1 1 1 0 Cysteine-rich KTR zinc_ribbon_2 PF13240.1 gi|284161884|ref|YP_003400507.1| - 0.12 11.8 3.3 0.12 11.8 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284161884|ref|YP_003400507.1| - 0.13 12.0 1.0 0.67 9.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-CHY PF05495.7 gi|284161884|ref|YP_003400507.1| - 0.13 12.3 0.1 0.19 11.8 0.1 1.3 1 1 0 1 1 1 0 CHY zinc finger zinc_ribbon_5 PF13719.1 gi|284161884|ref|YP_003400507.1| - 0.14 11.7 0.8 0.82 9.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|284161884|ref|YP_003400507.1| - 0.43 10.3 3.4 17 5.2 2.4 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 CTP_synth_N PF06418.9 gi|284161885|ref|YP_003400508.1| - 7.7e-129 428.6 0.6 1e-128 428.2 0.4 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|284161885|ref|YP_003400508.1| - 1.7e-53 180.9 0.0 3.1e-53 180.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|284161885|ref|YP_003400508.1| - 5.8e-11 42.1 0.0 1.1e-10 41.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|284161885|ref|YP_003400508.1| - 1.1e-09 38.0 0.0 2.2e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 SLH PF00395.15 gi|284161885|ref|YP_003400508.1| - 0.072 12.8 0.6 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 S-layer homology domain ArsA_ATPase PF02374.10 gi|284161885|ref|YP_003400508.1| - 0.12 11.3 0.1 0.38 9.7 0.0 1.8 1 1 1 2 2 2 0 Anion-transporting ATPase WHEP-TRS PF00458.15 gi|284161885|ref|YP_003400508.1| - 0.32 10.6 1.6 0.45 10.2 0.4 1.8 2 0 0 2 2 2 0 WHEP-TRS domain NAD_binding_1 PF00175.16 gi|284161886|ref|YP_003400509.1| - 2.8e-17 63.2 0.0 4.4e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|284161886|ref|YP_003400509.1| - 4.1e-14 51.7 2.7 4.1e-14 51.7 1.8 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|284161886|ref|YP_003400509.1| - 0.021 14.9 0.0 0.053 13.6 0.0 1.7 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|284161886|ref|YP_003400509.1| - 0.14 12.0 2.7 1.9 8.3 0.0 2.6 1 1 1 3 3 3 0 Ferric reductase NAD binding domain FlpD PF02662.11 gi|284161887|ref|YP_003400510.1| - 3.7e-29 100.9 0.2 6.5e-28 96.9 0.0 2.9 3 0 0 3 3 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|284161887|ref|YP_003400510.1| - 1.5e-25 87.7 38.8 1e-06 28.0 2.2 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284161887|ref|YP_003400510.1| - 1.8e-20 71.8 37.3 5.4e-06 26.0 1.6 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284161887|ref|YP_003400510.1| - 4e-18 65.9 18.9 1.3e-05 25.8 0.0 4.8 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|284161887|ref|YP_003400510.1| - 8.6e-18 64.4 34.4 8.4e-09 35.6 7.3 4.4 3 2 1 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284161887|ref|YP_003400510.1| - 2.6e-15 55.9 33.4 5.9e-08 32.3 6.0 3.7 2 1 2 4 4 4 4 4Fe-4S dicluster domain DAO PF01266.19 gi|284161887|ref|YP_003400510.1| - 6.1e-14 51.6 0.2 1.5e-05 24.0 0.7 3.3 2 1 1 3 3 3 2 FAD dependent oxidoreductase Fer4_9 PF13187.1 gi|284161887|ref|YP_003400510.1| - 1.5e-13 50.7 36.1 1.6e-09 37.8 6.9 3.7 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284161887|ref|YP_003400510.1| - 9.5e-13 47.8 27.9 6e-07 29.2 6.0 4.3 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284161887|ref|YP_003400510.1| - 2.2e-12 47.1 28.1 1.2e-05 25.5 6.3 4.7 4 1 2 6 6 5 5 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|284161887|ref|YP_003400510.1| - 4.9e-12 46.1 0.0 1.8e-09 37.7 0.0 3.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_2 PF12797.2 gi|284161887|ref|YP_003400510.1| - 5.8e-12 44.7 42.8 0.00016 21.3 3.0 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284161887|ref|YP_003400510.1| - 1e-11 44.6 31.0 9.4e-08 31.9 6.1 4.9 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284161887|ref|YP_003400510.1| - 1e-08 35.4 23.4 0.002 18.5 0.7 4.8 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284161887|ref|YP_003400510.1| - 2e-08 33.9 41.0 0.018 15.3 1.3 5.4 5 0 0 5 5 4 4 4Fe-4S binding domain HI0933_like PF03486.9 gi|284161887|ref|YP_003400510.1| - 8e-08 31.1 0.2 0.00072 18.1 0.1 3.0 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox PF00070.22 gi|284161887|ref|YP_003400510.1| - 1.4e-07 31.8 1.6 2.6e-06 27.7 0.1 3.1 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|284161887|ref|YP_003400510.1| - 1.9e-07 30.5 0.0 2.9e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284161887|ref|YP_003400510.1| - 2.2e-07 30.8 0.1 6.1e-07 29.3 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_15 PF13459.1 gi|284161887|ref|YP_003400510.1| - 9e-06 26.1 24.1 0.053 14.0 0.3 5.0 3 1 1 4 4 4 3 4Fe-4S single cluster domain FAD_binding_2 PF00890.19 gi|284161887|ref|YP_003400510.1| - 3.5e-05 22.8 0.6 6.2e-05 22.0 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.19 gi|284161887|ref|YP_003400510.1| - 5.7e-05 22.3 0.0 0.0037 16.4 0.0 2.4 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|284161887|ref|YP_003400510.1| - 8.2e-05 21.6 0.2 0.00018 20.5 0.2 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|284161887|ref|YP_003400510.1| - 0.00012 21.2 0.1 0.00022 20.3 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|284161887|ref|YP_003400510.1| - 0.00012 22.1 0.0 0.0095 16.0 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_13 PF13370.1 gi|284161887|ref|YP_003400510.1| - 0.00036 20.8 30.0 0.38 11.1 1.1 4.6 4 0 0 4 4 4 3 4Fe-4S single cluster domain NAD_binding_9 PF13454.1 gi|284161887|ref|YP_003400510.1| - 0.0011 18.8 0.3 0.34 10.6 0.1 2.8 3 0 0 3 3 2 1 FAD-NAD(P)-binding Fer4_3 PF12798.2 gi|284161887|ref|YP_003400510.1| - 0.0017 18.7 55.9 0.0045 17.4 4.1 5.8 5 0 0 5 5 4 4 4Fe-4S binding domain Trp_halogenase PF04820.9 gi|284161887|ref|YP_003400510.1| - 0.004 15.8 0.1 0.48 8.9 0.1 2.4 2 0 0 2 2 2 1 Tryptophan halogenase AlaDh_PNT_C PF01262.16 gi|284161887|ref|YP_003400510.1| - 0.0072 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|284161887|ref|YP_003400510.1| - 0.0093 16.2 0.1 0.071 13.3 0.0 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|284161887|ref|YP_003400510.1| - 0.017 14.0 0.5 0.042 12.7 0.2 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein CPSase_L_chain PF00289.17 gi|284161887|ref|YP_003400510.1| - 0.027 14.5 0.0 0.096 12.7 0.0 2.0 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Thi4 PF01946.12 gi|284161887|ref|YP_003400510.1| - 0.03 13.4 0.1 0.071 12.1 0.0 1.6 1 0 0 1 1 1 0 Thi4 family Fer4_11 PF13247.1 gi|284161887|ref|YP_003400510.1| - 0.13 12.1 16.1 1.7 8.6 1.8 3.9 4 0 0 4 4 3 0 4Fe-4S dicluster domain LysE PF01810.13 gi|284161888|ref|YP_003400511.1| - 3.2e-32 111.3 13.8 3.8e-32 111.1 9.6 1.0 1 0 0 1 1 1 1 LysE type translocator DUF308 PF03729.8 gi|284161888|ref|YP_003400511.1| - 0.00013 21.9 0.9 0.00013 21.9 0.6 3.0 2 1 2 4 4 4 2 Short repeat of unknown function (DUF308) Neurensin PF14927.1 gi|284161888|ref|YP_003400511.1| - 0.19 11.0 1.0 0.81 9.0 0.1 2.0 2 0 0 2 2 2 0 Neurensin DUF3185 PF11381.3 gi|284161888|ref|YP_003400511.1| - 0.31 10.8 3.2 2 8.2 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) Phtf-FEM1B_bdg PF12129.3 gi|284161888|ref|YP_003400511.1| - 3.5 6.9 5.2 13 5.0 0.1 2.4 1 1 1 2 2 2 0 Male germ-cell putative homeodomain transcription factor UbiA PF01040.13 gi|284161889|ref|YP_003400512.1| - 3.8e-38 131.1 15.5 5.1e-38 130.7 10.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1212 PF06738.7 gi|284161889|ref|YP_003400512.1| - 0.16 11.4 5.3 0.046 13.1 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) FA_desaturase PF00487.19 gi|284161889|ref|YP_003400512.1| - 4.6 6.6 5.8 4.4 6.6 0.1 2.4 2 1 1 3 3 3 0 Fatty acid desaturase DUF4260 PF14079.1 gi|284161889|ref|YP_003400512.1| - 5.4 6.8 8.4 0.24 11.2 1.2 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4260) CN_hydrolase PF00795.17 gi|284161890|ref|YP_003400513.1| - 1.6e-21 76.5 0.0 2.4e-21 75.9 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase EFG_II PF14492.1 gi|284161890|ref|YP_003400513.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Elongation Factor G, domain II MFS_1 PF07690.11 gi|284161891|ref|YP_003400514.1| - 1.6e-22 79.7 32.4 2.9e-22 78.8 19.5 2.0 1 1 0 1 1 1 1 Major Facilitator Superfamily MarR PF01047.17 gi|284161892|ref|YP_003400515.1| - 2.4e-10 39.9 0.5 4.5e-10 39.0 0.3 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284161892|ref|YP_003400515.1| - 8.4e-10 37.8 2.7 8.4e-10 37.8 1.9 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284161892|ref|YP_003400515.1| - 4.6e-08 32.6 0.4 7.7e-08 31.8 0.0 1.5 2 0 0 2 2 2 1 MarR family B-block_TFIIIC PF04182.7 gi|284161892|ref|YP_003400515.1| - 4.2e-06 26.5 0.0 5.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.14 gi|284161892|ref|YP_003400515.1| - 7.2e-06 25.6 1.1 8e-06 25.4 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|284161892|ref|YP_003400515.1| - 8.9e-06 25.2 0.2 1.9e-05 24.2 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|284161892|ref|YP_003400515.1| - 0.00049 20.3 0.1 0.00083 19.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|284161892|ref|YP_003400515.1| - 0.00053 19.4 1.1 0.00053 19.4 0.8 1.8 1 1 1 2 2 2 1 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|284161892|ref|YP_003400515.1| - 0.00067 19.5 0.0 0.0014 18.5 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|284161892|ref|YP_003400515.1| - 0.0014 18.4 0.6 0.0027 17.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|284161892|ref|YP_003400515.1| - 0.0015 18.3 0.3 0.0027 17.5 0.1 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.1 gi|284161892|ref|YP_003400515.1| - 0.0032 17.4 0.0 0.0048 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|284161892|ref|YP_003400515.1| - 0.0076 15.8 0.0 0.066 12.8 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284161892|ref|YP_003400515.1| - 0.01 15.6 0.1 0.024 14.4 0.0 1.7 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain BAR_2 PF10455.4 gi|284161892|ref|YP_003400515.1| - 0.016 14.1 0.0 0.036 12.9 0.0 1.6 1 1 1 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking FeoC PF09012.5 gi|284161892|ref|YP_003400515.1| - 0.032 13.9 0.2 0.032 13.9 0.2 1.8 2 1 0 2 2 2 0 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|284161892|ref|YP_003400515.1| - 0.04 14.0 0.6 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator RNA_pol_Rpc34 PF05158.7 gi|284161892|ref|YP_003400515.1| - 0.047 12.8 0.9 0.067 12.3 0.6 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_39 PF14090.1 gi|284161892|ref|YP_003400515.1| - 0.068 12.6 0.2 0.28 10.6 0.2 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain SWIRM PF04433.12 gi|284161892|ref|YP_003400515.1| - 0.09 12.9 0.7 0.43 10.7 0.1 2.2 2 1 1 3 3 3 0 SWIRM domain F-112 PF09645.5 gi|284161892|ref|YP_003400515.1| - 0.091 12.6 0.4 0.14 12.0 0.3 1.3 1 0 0 1 1 1 0 F-112 protein HTH_45 PF14947.1 gi|284161892|ref|YP_003400515.1| - 0.099 12.4 0.2 0.18 11.6 0.0 1.5 2 0 0 2 2 1 0 Winged helix-turn-helix Crp PF00325.15 gi|284161892|ref|YP_003400515.1| - 0.2 11.1 0.8 0.39 10.2 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family HTH_12 PF08461.5 gi|284161892|ref|YP_003400515.1| - 0.42 10.3 6.1 0.14 11.8 1.5 2.2 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HARE-HTH PF05066.8 gi|284161892|ref|YP_003400515.1| - 0.66 10.3 3.5 22 5.4 0.2 3.1 2 1 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain LSM PF01423.17 gi|284161893|ref|YP_003400516.1| - 4.2e-17 61.4 1.9 4.7e-17 61.2 1.3 1.0 1 0 0 1 1 1 1 LSM domain DUF1284 PF06935.6 gi|284161893|ref|YP_003400516.1| - 0.062 13.4 0.0 0.069 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1284) Epimerase PF01370.16 gi|284161894|ref|YP_003400517.1| - 1.8e-55 187.9 0.1 2.1e-55 187.7 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|284161894|ref|YP_003400517.1| - 3.6e-23 81.8 0.0 4e-23 81.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|284161894|ref|YP_003400517.1| - 3.4e-20 72.1 0.0 2.6e-19 69.2 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|284161894|ref|YP_003400517.1| - 5.1e-20 71.3 0.1 6.5e-20 70.9 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|284161894|ref|YP_003400517.1| - 7.9e-14 51.1 0.1 1.3e-09 37.3 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|284161894|ref|YP_003400517.1| - 9.5e-11 42.0 0.0 1.4e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|284161894|ref|YP_003400517.1| - 2e-07 31.0 0.0 9e-07 28.9 0.0 1.9 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|284161894|ref|YP_003400517.1| - 0.00028 20.5 0.0 0.001 18.7 0.0 1.8 1 1 0 1 1 1 1 KR domain Pyr_redox_3 PF13738.1 gi|284161894|ref|YP_003400517.1| - 0.004 17.2 0.1 0.22 11.5 0.0 2.1 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|284161894|ref|YP_003400517.1| - 0.005 16.1 0.0 0.011 14.9 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family 3HCDH_N PF02737.13 gi|284161894|ref|YP_003400517.1| - 0.052 13.2 0.0 0.087 12.4 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|284161894|ref|YP_003400517.1| - 0.056 12.4 0.0 0.098 11.6 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase DbpA PF03880.10 gi|284161894|ref|YP_003400517.1| - 0.069 12.8 0.2 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 DbpA RNA binding domain TrkA_N PF02254.13 gi|284161894|ref|YP_003400517.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain HTH_45 PF14947.1 gi|284161895|ref|YP_003400518.1| - 5e-25 87.1 1.6 5.4e-25 87.0 1.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|284161895|ref|YP_003400518.1| - 0.00017 21.2 0.2 0.00018 21.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|284161895|ref|YP_003400518.1| - 0.00072 19.2 0.1 0.001 18.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.1 gi|284161895|ref|YP_003400518.1| - 0.034 13.6 0.0 0.038 13.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF3116 PF11313.3 gi|284161895|ref|YP_003400518.1| - 0.29 10.7 2.1 1.3 8.6 1.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) HTH_45 PF14947.1 gi|284161896|ref|YP_003400519.1| - 0.00026 20.7 0.0 0.00034 20.3 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DUF1102 PF06510.6 gi|284161897|ref|YP_003400520.1| - 3.7e-60 201.9 0.2 4.4e-60 201.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.6 gi|284161898|ref|YP_003400521.1| - 6.2e-58 194.7 2.5 7.4e-58 194.4 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.6 gi|284161899|ref|YP_003400522.1| - 3e-29 101.7 3.3 3.7e-29 101.4 2.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) Lipocalin_6 PF13944.1 gi|284161899|ref|YP_003400522.1| - 0.16 12.1 2.6 0.97 9.5 1.8 1.9 1 1 0 1 1 1 0 Lipocalin-like domain DUF3639 PF12341.3 gi|284161899|ref|YP_003400522.1| - 1.3 9.0 4.3 1 9.4 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3639) Peptidase_S24 PF00717.18 gi|284161900|ref|YP_003400523.1| - 3.1e-14 52.3 0.1 1e-13 50.6 0.0 1.9 2 0 0 2 2 2 1 Peptidase S24-like TctB PF07331.6 gi|284161900|ref|YP_003400523.1| - 0.015 14.9 0.8 0.015 14.9 0.6 2.2 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family Tetraspannin PF00335.15 gi|284161900|ref|YP_003400523.1| - 0.058 12.6 0.2 0.058 12.6 0.1 2.0 2 0 0 2 2 2 0 Tetraspanin family PmbA_TldD PF01523.11 gi|284161903|ref|YP_003400526.1| - 8.2e-54 182.8 0.1 9.8e-54 182.5 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PMT_2 PF13231.1 gi|284161904|ref|YP_003400527.1| - 1.1e-16 61.0 14.7 1.1e-16 61.0 10.2 2.7 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|284161904|ref|YP_003400527.1| - 3.2e-08 33.2 15.8 3.2e-08 33.2 11.0 2.5 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase MerC PF03203.9 gi|284161904|ref|YP_003400527.1| - 0.98 9.8 9.4 0.66 10.3 0.7 3.6 2 2 1 3 3 3 0 MerC mercury resistance protein MCM PF00493.18 gi|284161905|ref|YP_003400528.1| - 3.7e-106 354.6 5.6 1.8e-55 188.0 0.5 3.4 3 0 0 3 3 3 3 MCM2/3/5 family LAGLIDADG_3 PF14528.1 gi|284161905|ref|YP_003400528.1| - 9.6e-50 166.7 12.9 9.7e-21 73.8 0.2 5.5 4 0 0 4 4 4 4 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|284161905|ref|YP_003400528.1| - 4.5e-36 124.3 22.2 1.4e-21 76.7 4.5 2.7 2 0 0 2 2 2 2 Intein splicing domain MCM_N PF14551.1 gi|284161905|ref|YP_003400528.1| - 2.2e-08 34.5 6.4 7.2e-08 32.9 0.4 3.9 3 1 0 3 3 3 1 MCM N-terminal domain LAGLIDADG_WhiA PF14527.1 gi|284161905|ref|YP_003400528.1| - 4.5e-08 32.8 5.0 0.028 14.2 0.0 5.1 6 0 0 6 6 6 2 WhiA LAGLIDADG-like domain Hom_end PF05204.9 gi|284161905|ref|YP_003400528.1| - 2e-05 24.4 0.1 0.26 11.2 0.0 4.8 5 0 0 5 5 5 1 Homing endonuclease HTH_30 PF13556.1 gi|284161905|ref|YP_003400528.1| - 5.9e-05 22.5 3.2 0.015 14.8 0.1 3.8 4 0 0 4 4 4 1 PucR C-terminal helix-turn-helix domain HTH_3 PF01381.17 gi|284161905|ref|YP_003400528.1| - 0.00013 21.7 0.0 0.11 12.3 0.0 3.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_10 PF04967.7 gi|284161905|ref|YP_003400528.1| - 0.00097 18.6 0.6 0.037 13.6 0.0 3.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_8 PF02954.14 gi|284161905|ref|YP_003400528.1| - 0.0025 17.3 0.5 0.011 15.2 0.3 2.2 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family ADK_lid PF05191.9 gi|284161905|ref|YP_003400528.1| - 0.0032 17.1 0.8 0.012 15.2 0.6 2.0 1 0 0 1 1 1 1 Adenylate kinase, active site lid WhiA_N PF10298.4 gi|284161905|ref|YP_003400528.1| - 0.0049 16.6 0.0 0.04 13.7 0.0 2.7 2 0 0 2 2 2 1 WhiA N-terminal LAGLIDADG-like domain MobC PF05713.6 gi|284161905|ref|YP_003400528.1| - 0.024 14.5 0.3 0.12 12.4 0.2 2.2 1 0 0 1 1 1 0 Bacterial mobilisation protein (MobC) Hint PF01079.15 gi|284161905|ref|YP_003400528.1| - 0.028 13.6 0.0 0.2 10.8 0.0 2.1 2 0 0 2 2 2 0 Hint module Zn_Tnp_IS1595 PF12760.2 gi|284161905|ref|YP_003400528.1| - 0.057 13.2 2.0 0.14 11.9 0.9 2.0 2 0 0 2 2 1 0 Transposase zinc-ribbon domain Sigma54_activat PF00158.21 gi|284161905|ref|YP_003400528.1| - 0.088 12.2 0.0 0.49 9.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF329 PF03884.9 gi|284161905|ref|YP_003400528.1| - 0.11 12.1 0.4 0.24 10.9 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF329) Mg_chelatase PF01078.16 gi|284161905|ref|YP_003400528.1| - 0.11 11.6 0.0 6.5 5.8 0.0 3.0 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI Zn-ribbon_8 PF09723.5 gi|284161905|ref|YP_003400528.1| - 0.18 11.8 1.2 0.6 10.1 0.8 1.9 1 0 0 1 1 1 0 Zinc ribbon domain L31 PF09784.4 gi|284161905|ref|YP_003400528.1| - 0.39 10.8 5.6 0.28 11.2 0.2 3.4 4 0 0 4 4 3 0 Mitochondrial ribosomal protein L31 Elf1 PF05129.8 gi|284161905|ref|YP_003400528.1| - 0.4 10.4 3.6 0.59 9.8 0.3 2.9 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like DUF1610 PF07754.6 gi|284161905|ref|YP_003400528.1| - 3.6 7.8 7.4 1.6 8.8 0.3 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF2892 PF11127.3 gi|284161906|ref|YP_003400529.1| - 0.045 13.5 6.0 0.051 13.4 4.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) SdpI PF13630.1 gi|284161906|ref|YP_003400529.1| - 0.18 11.5 4.0 0.19 11.4 2.8 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family Col_cuticle_N PF01484.12 gi|284161906|ref|YP_003400529.1| - 1.4 8.6 5.0 0.38 10.4 0.3 1.9 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain ATP1G1_PLM_MAT8 PF02038.11 gi|284161906|ref|YP_003400529.1| - 1.5 7.8 5.1 0.45 9.5 0.7 1.9 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF3185 PF11381.3 gi|284161906|ref|YP_003400529.1| - 4.8 7.0 7.6 1.6 8.5 1.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) Pox_A14 PF05767.7 gi|284161906|ref|YP_003400529.1| - 9.9 6.2 6.8 7.6 6.5 1.0 2.0 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 Aconitase PF00330.15 gi|284161907|ref|YP_003400530.1| - 6e-77 259.0 0.7 1.8e-50 171.7 0.1 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|284161907|ref|YP_003400530.1| - 6.7e-05 21.6 0.0 0.0001 21.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) tRNA-synt_2b PF00587.20 gi|284161908|ref|YP_003400531.1| - 8.1e-37 126.4 0.0 3.2e-35 121.2 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|284161908|ref|YP_003400531.1| - 1.1e-22 80.1 14.1 1.9e-22 79.3 9.7 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain OmpH PF03938.9 gi|284161908|ref|YP_003400531.1| - 0.0011 18.9 3.5 0.0023 17.9 2.4 1.5 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) IBB PF01749.15 gi|284161908|ref|YP_003400531.1| - 0.0032 17.6 4.0 0.0068 16.5 2.8 1.5 1 0 0 1 1 1 1 Importin beta binding domain DUF948 PF06103.6 gi|284161908|ref|YP_003400531.1| - 0.039 13.8 0.9 0.088 12.6 0.6 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) APG6 PF04111.7 gi|284161908|ref|YP_003400531.1| - 0.046 12.7 1.9 0.081 11.9 1.3 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4071 PF13281.1 gi|284161908|ref|YP_003400531.1| - 0.051 12.4 2.6 0.077 11.8 1.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) Baculo_PEP_C PF04513.7 gi|284161908|ref|YP_003400531.1| - 0.064 13.0 0.3 0.12 12.1 0.2 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Ppx-GppA PF02541.11 gi|284161908|ref|YP_003400531.1| - 0.086 12.0 0.2 8.5 5.4 0.3 2.2 2 0 0 2 2 2 0 Ppx/GppA phosphatase family CENP-F_leu_zip PF10473.4 gi|284161908|ref|YP_003400531.1| - 0.15 11.8 12.1 0.11 12.4 7.1 1.7 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Latarcin PF10279.4 gi|284161908|ref|YP_003400531.1| - 0.2 11.8 5.1 0.62 10.2 3.5 1.9 1 0 0 1 1 1 0 Latarcin precursor AAA_11 PF13086.1 gi|284161908|ref|YP_003400531.1| - 1.2 8.6 4.2 1.8 8.0 2.9 1.2 1 0 0 1 1 1 0 AAA domain eIF-4B PF06273.6 gi|284161908|ref|YP_003400531.1| - 4 6.0 4.4 6 5.4 3.1 1.1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B SIR2 PF02146.12 gi|284161909|ref|YP_003400532.1| - 1.9e-55 187.3 0.0 2.4e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.17 gi|284161909|ref|YP_003400532.1| - 2.6e-05 24.0 0.0 0.039 13.6 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain Zn-ribbon_8 PF09723.5 gi|284161909|ref|YP_003400532.1| - 0.0015 18.4 0.2 0.0029 17.5 0.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain XPG_I PF00867.13 gi|284161909|ref|YP_003400532.1| - 0.018 15.0 0.0 0.031 14.3 0.0 1.4 1 0 0 1 1 1 0 XPG I-region DNA_RNApol_7kD PF03604.8 gi|284161909|ref|YP_003400532.1| - 0.025 14.0 1.0 0.059 12.8 0.7 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|284161909|ref|YP_003400532.1| - 0.1 12.3 0.1 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Sgf11 PF08209.6 gi|284161909|ref|YP_003400532.1| - 0.16 11.2 1.6 5 6.5 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Ribosomal_S3Ae PF01015.13 gi|284161910|ref|YP_003400533.1| - 8.4e-77 256.9 4.0 9.4e-77 256.7 2.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DoxA PF07680.6 gi|284161910|ref|YP_003400533.1| - 0.011 15.3 0.1 0.02 14.4 0.1 1.5 1 1 0 1 1 1 0 TQO small subunit DoxA DUF2004 PF09406.5 gi|284161910|ref|YP_003400533.1| - 0.025 14.6 0.1 1.4 8.9 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2004) CsoSCA PF08936.5 gi|284161910|ref|YP_003400533.1| - 0.12 10.7 0.8 3.3 5.9 0.1 2.0 1 1 1 2 2 2 0 Carboxysome Shell Carbonic Anhydrase Radical_SAM PF04055.16 gi|284161911|ref|YP_003400534.1| - 1.1e-10 41.9 3.5 5e-09 36.5 2.5 2.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|284161911|ref|YP_003400534.1| - 7.7e-06 25.9 0.2 0.00011 22.2 0.1 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|284161911|ref|YP_003400534.1| - 0.12 12.5 0.6 0.92 9.6 0.4 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain RIO1 PF01163.17 gi|284161912|ref|YP_003400535.1| - 7.1e-11 41.7 0.0 1.3e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|284161912|ref|YP_003400535.1| - 6.2e-09 35.9 0.1 2.8e-05 23.9 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|284161912|ref|YP_003400535.1| - 5.5e-08 32.1 0.0 2e-07 30.2 0.0 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|284161912|ref|YP_003400535.1| - 1e-07 31.4 0.0 1.4e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.15 gi|284161912|ref|YP_003400535.1| - 0.0018 17.8 0.2 0.59 9.6 0.0 2.4 1 1 1 2 2 2 2 Choline/ethanolamine kinase WaaY PF06176.6 gi|284161912|ref|YP_003400535.1| - 0.018 14.2 0.2 0.029 13.5 0.2 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Kinase-like PF14531.1 gi|284161912|ref|YP_003400535.1| - 0.019 13.9 0.0 0.057 12.3 0.0 1.7 1 1 1 2 2 2 0 Kinase-like SBP_bac_11 PF13531.1 gi|284161913|ref|YP_003400536.1| - 3e-45 154.6 0.0 3.6e-45 154.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|284161913|ref|YP_003400536.1| - 8.9e-06 25.1 0.3 0.00028 20.2 0.1 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|284161913|ref|YP_003400536.1| - 1.6e-05 24.7 0.5 4.5e-05 23.3 0.2 1.6 1 1 0 2 2 2 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|284161913|ref|YP_003400536.1| - 0.00077 18.4 0.1 0.0053 15.7 0.0 2.0 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_8 PF13416.1 gi|284161913|ref|YP_003400536.1| - 0.02 14.6 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.15 gi|284161913|ref|YP_003400536.1| - 0.023 13.9 0.0 0.046 12.9 0.0 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 TF_Zn_Ribbon PF08271.7 gi|284161914|ref|YP_003400537.1| - 0.0005 19.3 1.9 0.0005 19.3 1.3 2.0 2 1 0 2 2 2 1 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|284161914|ref|YP_003400537.1| - 0.0011 18.3 0.4 0.72 9.4 0.0 2.1 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.4 gi|284161914|ref|YP_003400537.1| - 0.0013 18.3 0.8 0.71 9.6 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|284161914|ref|YP_003400537.1| - 0.0017 17.8 0.3 0.0059 16.1 0.2 1.8 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284161914|ref|YP_003400537.1| - 0.0024 17.5 0.5 0.0093 15.6 0.4 1.8 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284161914|ref|YP_003400537.1| - 0.0028 17.0 0.5 0.0068 15.8 0.3 1.7 1 1 0 1 1 1 1 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|284161914|ref|YP_003400537.1| - 0.0056 16.9 0.2 0.011 16.0 0.1 1.7 1 1 0 1 1 1 1 Restriction alleviation protein Lar Cys_rich_CPXG PF14255.1 gi|284161914|ref|YP_003400537.1| - 0.012 15.3 0.1 0.012 15.3 0.1 2.1 3 0 0 3 3 2 0 Cysteine-rich CPXCG zf-Di19 PF05605.7 gi|284161914|ref|YP_003400537.1| - 0.013 15.5 0.4 0.026 14.6 0.3 1.6 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DNA_RNApol_7kD PF03604.8 gi|284161914|ref|YP_003400537.1| - 0.018 14.4 3.7 0.36 10.3 2.2 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit CppA_C PF14507.1 gi|284161914|ref|YP_003400537.1| - 0.023 14.8 0.5 0.025 14.7 0.3 1.2 1 0 0 1 1 1 0 CppA C-terminal zf-ISL3 PF14690.1 gi|284161914|ref|YP_003400537.1| - 0.027 14.4 0.0 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-FCS PF06467.9 gi|284161914|ref|YP_003400537.1| - 0.034 13.7 0.2 0.8 9.4 0.0 2.1 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DZR PF12773.2 gi|284161914|ref|YP_003400537.1| - 0.045 13.5 0.1 0.092 12.5 0.1 1.7 1 1 0 1 1 1 0 Double zinc ribbon HNH_4 PF13395.1 gi|284161914|ref|YP_003400537.1| - 0.045 13.3 0.2 0.082 12.5 0.0 1.5 2 0 0 2 2 1 0 HNH endonuclease zf-LSD1 PF06943.7 gi|284161914|ref|YP_003400537.1| - 0.051 13.2 1.8 1.4 8.6 0.1 2.1 2 0 0 2 2 2 0 LSD1 zinc finger zf-ribbon_3 PF13248.1 gi|284161914|ref|YP_003400537.1| - 0.055 12.6 1.6 0.38 10.0 1.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain PyrI_C PF02748.10 gi|284161914|ref|YP_003400537.1| - 0.057 12.8 2.5 0.8 9.1 0.3 2.4 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-BED PF02892.10 gi|284161914|ref|YP_003400537.1| - 0.077 12.7 0.5 9.1 6.1 0.1 2.2 1 1 1 2 2 2 0 BED zinc finger Auto_anti-p27 PF06677.7 gi|284161914|ref|YP_003400537.1| - 0.084 12.6 1.1 0.48 10.2 0.0 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.5 gi|284161914|ref|YP_003400537.1| - 0.096 12.6 0.2 0.23 11.4 0.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|284161914|ref|YP_003400537.1| - 0.098 12.0 0.3 9.9 5.6 0.0 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF164 PF02591.10 gi|284161914|ref|YP_003400537.1| - 0.12 12.2 0.5 1.7 8.5 0.1 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain Prok-RING_1 PF14446.1 gi|284161914|ref|YP_003400537.1| - 0.16 11.7 1.0 0.64 9.7 0.8 1.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 FYDLN_acid PF09538.5 gi|284161914|ref|YP_003400537.1| - 0.16 12.5 5.2 0.5 10.9 3.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Mu-like_Com PF10122.4 gi|284161914|ref|YP_003400537.1| - 0.39 9.8 2.7 2.5 7.2 1.8 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2HC_2 PF13913.1 gi|284161914|ref|YP_003400537.1| - 1.2 8.8 3.2 3.3 7.4 0.3 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-CHCC PF10276.4 gi|284161914|ref|YP_003400537.1| - 1.6 8.6 4.2 1.9 8.4 0.1 2.6 3 0 0 3 3 3 0 Zinc-finger domain CpXC PF14353.1 gi|284161914|ref|YP_003400537.1| - 1.8 8.5 5.6 71 3.3 3.9 2.4 1 1 0 1 1 1 0 CpXC protein RtcB PF01139.12 gi|284161915|ref|YP_003400538.1| - 1.4e-150 501.9 1.4 8.9e-128 426.8 0.1 2.1 2 0 0 2 2 2 2 tRNA-splicing ligase RtcB LAGLIDADG_3 PF14528.1 gi|284161915|ref|YP_003400538.1| - 1.2e-25 89.5 1.4 1.2e-19 70.3 0.1 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|284161915|ref|YP_003400538.1| - 7.4e-08 31.6 0.2 0.0029 16.5 0.0 2.7 3 0 0 3 3 3 2 Intein splicing domain LAGLIDADG_WhiA PF14527.1 gi|284161915|ref|YP_003400538.1| - 0.097 12.5 2.6 2.4 8.0 0.9 2.9 2 1 0 2 2 2 0 WhiA LAGLIDADG-like domain TMP-TENI PF02581.12 gi|284161916|ref|YP_003400539.1| - 3.6e-62 208.6 0.1 4.4e-62 208.3 0.1 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI DUF561 PF04481.7 gi|284161916|ref|YP_003400539.1| - 0.00018 20.5 0.2 0.023 13.6 0.2 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF561) DUF211 PF02680.9 gi|284161916|ref|YP_003400539.1| - 0.0057 16.4 0.3 0.025 14.3 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized ArCR, COG1888 ThiG PF05690.9 gi|284161916|ref|YP_003400539.1| - 0.0072 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|284161916|ref|YP_003400539.1| - 0.0091 15.1 0.3 0.048 12.7 0.2 1.9 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|284161916|ref|YP_003400539.1| - 0.018 14.3 0.1 0.03 13.6 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein NUDIX PF00293.23 gi|284161917|ref|YP_003400540.1| - 7.3e-20 70.9 0.0 8.6e-20 70.7 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|284161917|ref|YP_003400540.1| - 0.035 13.5 0.0 0.046 13.1 0.0 1.4 1 1 0 1 1 1 0 NUDIX domain GyrI-like PF06445.10 gi|284161917|ref|YP_003400540.1| - 0.093 12.7 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 GyrI-like small molecule binding domain TFIIS_C PF01096.13 gi|284161918|ref|YP_003400541.1| - 7.5e-20 70.2 5.0 7.5e-20 70.2 3.4 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|284161918|ref|YP_003400541.1| - 9.4e-11 41.2 5.3 9.4e-11 41.2 3.7 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|284161918|ref|YP_003400541.1| - 3.4e-08 33.1 12.4 4.3e-06 26.4 1.4 2.6 2 1 0 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.2 gi|284161918|ref|YP_003400541.1| - 1.2e-06 28.2 7.6 0.0014 18.4 0.8 2.3 2 1 0 2 2 2 2 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|284161918|ref|YP_003400541.1| - 1.2e-06 27.7 12.7 0.00061 19.0 0.2 3.1 3 2 0 3 3 2 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|284161918|ref|YP_003400541.1| - 8.1e-06 25.1 14.9 0.029 13.8 3.2 3.6 3 1 0 3 3 3 3 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284161918|ref|YP_003400541.1| - 6e-05 22.6 9.9 0.015 14.9 1.3 2.5 1 1 1 2 2 2 2 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|284161918|ref|YP_003400541.1| - 0.00048 19.5 12.5 0.013 14.9 1.8 3.3 3 0 0 3 3 3 1 A2L zinc ribbon domain zf-ISL3 PF14690.1 gi|284161918|ref|YP_003400541.1| - 0.0009 19.2 9.0 0.96 9.5 1.5 4.0 3 1 1 4 4 4 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|284161918|ref|YP_003400541.1| - 0.0022 17.1 17.5 0.22 10.7 1.2 3.8 3 1 0 4 4 4 2 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|284161918|ref|YP_003400541.1| - 0.0023 17.7 4.9 0.16 11.8 0.4 3.2 3 0 0 3 3 3 1 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.1 gi|284161918|ref|YP_003400541.1| - 0.0057 16.3 12.9 3.6 7.3 0.1 4.1 3 1 0 3 3 3 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|284161918|ref|YP_003400541.1| - 0.0064 16.4 13.9 1.1 9.2 0.5 4.2 4 0 0 4 4 4 1 Zinc ribbon domain Elf1 PF05129.8 gi|284161918|ref|YP_003400541.1| - 0.011 15.4 5.8 0.062 12.9 0.1 2.5 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.1 gi|284161918|ref|YP_003400541.1| - 0.011 15.2 9.9 0.099 12.2 0.1 4.0 4 0 0 4 4 4 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|284161918|ref|YP_003400541.1| - 0.014 14.8 2.6 0.014 14.8 1.8 3.4 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger PolC_DP2 PF03833.8 gi|284161918|ref|YP_003400541.1| - 0.015 13.0 4.9 0.2 9.2 0.2 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 zinc_ribbon_4 PF13717.1 gi|284161918|ref|YP_003400541.1| - 0.016 14.8 11.0 0.1 12.3 0.2 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf-BED PF02892.10 gi|284161918|ref|YP_003400541.1| - 0.018 14.8 7.5 0.45 10.3 0.0 3.3 3 0 0 3 3 3 0 BED zinc finger zinc-ribbons_6 PF07191.7 gi|284161918|ref|YP_003400541.1| - 0.036 13.8 0.5 0.036 13.8 0.3 2.8 2 1 1 3 3 3 0 zinc-ribbons Auto_anti-p27 PF06677.7 gi|284161918|ref|YP_003400541.1| - 0.045 13.5 5.0 0.045 13.5 3.5 2.9 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PhnA_Zn_Ribbon PF08274.7 gi|284161918|ref|YP_003400541.1| - 0.05 13.4 6.1 1.4 8.7 0.6 3.1 2 2 0 2 2 2 0 PhnA Zinc-Ribbon zf-DNA_Pol PF08996.5 gi|284161918|ref|YP_003400541.1| - 0.065 12.5 0.1 0.065 12.5 0.1 2.1 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger DUF2387 PF09526.5 gi|284161918|ref|YP_003400541.1| - 0.072 13.0 12.6 0.091 12.6 0.3 2.8 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Zn_ribbon_recom PF13408.1 gi|284161918|ref|YP_003400541.1| - 0.092 13.0 13.5 0.58 10.4 1.5 2.7 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain IRF-2BP1_2 PF11261.3 gi|284161918|ref|YP_003400541.1| - 0.1 12.0 1.2 0.16 11.4 0.1 1.9 2 0 0 2 2 2 0 Interferon regulatory factor 2-binding protein zinc finger Phage_endo_I PF05367.6 gi|284161918|ref|YP_003400541.1| - 0.12 11.7 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 Phage endonuclease I zf-MYND PF01753.13 gi|284161918|ref|YP_003400541.1| - 0.13 12.1 5.7 0.98 9.3 0.1 2.4 2 1 0 2 2 2 0 MYND finger DUF35_N PF12172.3 gi|284161918|ref|YP_003400541.1| - 0.15 12.0 12.3 2 8.4 0.2 3.8 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.1 gi|284161918|ref|YP_003400541.1| - 0.15 11.7 7.8 5.2 6.8 0.6 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.6 gi|284161918|ref|YP_003400541.1| - 0.16 11.5 10.2 0.21 11.1 1.5 3.3 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Baculo_LEF5_C PF11792.3 gi|284161918|ref|YP_003400541.1| - 0.16 11.3 0.1 0.16 11.3 0.1 3.3 4 0 0 4 4 3 0 Baculoviridae late expression factor 5 C-terminal domain Terminase_GpA PF05876.7 gi|284161918|ref|YP_003400541.1| - 0.16 10.2 9.5 0.033 12.5 2.0 2.0 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) HypA PF01155.14 gi|284161918|ref|YP_003400541.1| - 0.18 11.5 11.2 1.9 8.1 4.6 2.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|284161918|ref|YP_003400541.1| - 0.28 11.0 7.5 6.5 6.6 0.0 3.7 4 0 0 4 4 3 0 YhfH-like protein FYDLN_acid PF09538.5 gi|284161918|ref|YP_003400541.1| - 0.29 11.7 9.5 4.3 7.9 0.9 3.0 1 1 2 3 3 3 0 Protein of unknown function (FYDLN_acid) zf-CHCC PF10276.4 gi|284161918|ref|YP_003400541.1| - 0.34 10.7 0.1 0.34 10.7 0.0 2.5 4 0 0 4 4 2 0 Zinc-finger domain zf-C4pol PF14260.1 gi|284161918|ref|YP_003400541.1| - 0.37 10.8 3.6 1.7 8.6 0.3 2.3 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-H2C2_2 PF13465.1 gi|284161918|ref|YP_003400541.1| - 0.48 10.8 18.2 2.6 8.4 0.5 4.1 4 0 0 4 4 4 0 Zinc-finger double domain DUF2039 PF10217.4 gi|284161918|ref|YP_003400541.1| - 0.51 10.3 7.8 1.1 9.3 0.9 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) PADR1 PF08063.7 gi|284161918|ref|YP_003400541.1| - 0.51 9.7 7.5 0.3 10.5 0.9 3.0 3 1 0 3 3 3 0 PADR1 (NUC008) domain IBR PF01485.16 gi|284161918|ref|YP_003400541.1| - 0.66 9.8 12.2 1.5 8.7 1.2 3.0 2 1 0 2 2 2 0 IBR domain DUF2296 PF10058.4 gi|284161918|ref|YP_003400541.1| - 0.71 9.6 10.5 8.4 6.2 0.1 4.0 4 0 0 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1 PF03811.8 gi|284161918|ref|YP_003400541.1| - 0.8 9.2 11.3 5.1 6.6 0.0 3.7 3 1 0 3 3 3 0 InsA N-terminal domain zf-CHY PF05495.7 gi|284161918|ref|YP_003400541.1| - 0.82 9.8 10.2 1.4 9.0 3.6 2.9 1 1 2 3 3 3 0 CHY zinc finger GFA PF04828.9 gi|284161918|ref|YP_003400541.1| - 0.89 9.5 10.7 7.1 6.6 0.7 3.4 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Lar_restr_allev PF14354.1 gi|284161918|ref|YP_003400541.1| - 0.92 9.8 12.6 0.33 11.2 1.0 3.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-RING_3 PF14369.1 gi|284161918|ref|YP_003400541.1| - 1.6 8.7 7.8 2.6 8.0 0.0 3.3 4 0 0 4 4 3 0 zinc-finger eIF-5_eIF-2B PF01873.12 gi|284161918|ref|YP_003400541.1| - 1.9 8.1 5.4 0.3 10.7 0.2 1.9 1 1 1 2 2 2 0 Domain found in IF2B/IF5 ADK_lid PF05191.9 gi|284161918|ref|YP_003400541.1| - 2.3 7.9 9.5 16 5.2 0.1 3.8 4 0 0 4 4 4 0 Adenylate kinase, active site lid DNA_RNApol_7kD PF03604.8 gi|284161918|ref|YP_003400541.1| - 2.5 7.6 12.2 11 5.5 0.3 3.6 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|284161918|ref|YP_003400541.1| - 3.8 7.2 13.5 3.5 7.4 0.4 3.8 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Ogr_Delta PF04606.7 gi|284161918|ref|YP_003400541.1| - 4 7.1 11.8 6.3 6.5 2.1 2.9 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger DUF2082 PF09855.4 gi|284161918|ref|YP_003400541.1| - 4.7 7.1 16.5 16 5.4 0.0 4.1 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF164 PF02591.10 gi|284161918|ref|YP_003400541.1| - 4.8 7.1 6.5 26 4.7 0.1 3.3 4 0 0 4 4 3 0 Putative zinc ribbon domain CpXC PF14353.1 gi|284161918|ref|YP_003400541.1| - 5.5 6.9 10.6 3.7 7.5 1.8 3.2 2 1 1 3 3 3 0 CpXC protein DUF3797 PF12677.2 gi|284161918|ref|YP_003400541.1| - 6 6.5 9.9 10 5.7 0.0 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) C1_1 PF00130.17 gi|284161918|ref|YP_003400541.1| - 6.1 6.6 9.6 11 5.8 1.8 2.5 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-AN1 PF01428.11 gi|284161918|ref|YP_003400541.1| - 6.4 6.7 10.1 37 4.2 0.0 3.3 3 1 0 3 3 3 0 AN1-like Zinc finger Rep_fac-A_C PF08646.5 gi|284161918|ref|YP_003400541.1| - 6.9 6.3 8.7 7.4 6.2 1.6 2.2 2 0 0 2 2 2 0 Replication factor-A C terminal domain Fer4_8 PF13183.1 gi|284161918|ref|YP_003400541.1| - 7 6.7 8.6 0.28 11.2 0.7 2.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain FYVE PF01363.16 gi|284161918|ref|YP_003400541.1| - 7.6 6.5 10.9 70 3.4 7.6 2.5 1 1 0 1 1 1 0 FYVE zinc finger TerY-C PF15616.1 gi|284161918|ref|YP_003400541.1| - 8.6 6.3 10.3 7.8 6.4 1.3 2.8 1 1 1 2 2 2 0 TerY-C metal binding domain UbiA PF01040.13 gi|284161919|ref|YP_003400542.1| - 1.1e-20 73.9 22.2 1.5e-20 73.4 15.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family FIST PF08495.5 gi|284161920|ref|YP_003400543.1| - 2.6e-05 23.4 0.0 7.4e-05 21.9 0.0 1.7 2 0 0 2 2 2 1 FIST N domain KaiC PF06745.8 gi|284161922|ref|YP_003400545.1| - 2.8e-39 134.5 0.0 6.9e-39 133.3 0.0 1.6 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|284161922|ref|YP_003400545.1| - 5.2e-08 32.5 0.0 1.1e-07 31.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|284161922|ref|YP_003400545.1| - 0.0072 16.2 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|284161922|ref|YP_003400545.1| - 0.021 13.7 0.0 0.029 13.2 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain IstB_IS21 PF01695.12 gi|284161922|ref|YP_003400545.1| - 0.045 13.1 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein RecA PF00154.16 gi|284161922|ref|YP_003400545.1| - 0.08 11.9 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein GvpD PF07088.6 gi|284161922|ref|YP_003400545.1| - 0.081 11.2 0.0 0.12 10.6 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_22 PF13401.1 gi|284161922|ref|YP_003400545.1| - 0.11 12.6 0.2 1.8 8.7 0.1 2.4 2 1 0 2 2 2 0 AAA domain HSP20 PF00011.16 gi|284161923|ref|YP_003400546.1| - 2.7e-11 43.2 2.7 3.9e-10 39.5 1.9 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|284161923|ref|YP_003400546.1| - 5.4e-06 26.1 0.0 6.8e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|284161923|ref|YP_003400546.1| - 0.00038 20.9 0.1 0.00063 20.2 0.1 1.3 1 0 0 1 1 1 1 CS domain PIH1 PF08190.7 gi|284161923|ref|YP_003400546.1| - 0.023 14.1 0.1 0.031 13.7 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 AAA PF00004.24 gi|284161924|ref|YP_003400547.1| - 1.4e-99 329.4 1.8 6.6e-50 168.7 0.0 4.7 4 0 0 4 4 4 3 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|284161924|ref|YP_003400547.1| - 1e-32 111.9 0.3 5e-32 109.7 0.2 2.3 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain LAGLIDADG_3 PF14528.1 gi|284161924|ref|YP_003400547.1| - 6.8e-21 74.2 2.6 8.5e-14 51.5 0.3 3.2 2 0 0 2 2 2 2 LAGLIDADG-like domain CDC48_2 PF02933.12 gi|284161924|ref|YP_003400547.1| - 8.4e-17 60.5 0.1 2.6e-16 58.9 0.1 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|284161924|ref|YP_003400547.1| - 1.3e-16 60.3 1.1 1.6e-07 30.6 0.0 3.9 4 0 0 4 4 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|284161924|ref|YP_003400547.1| - 1.4e-13 51.2 2.1 2.4e-06 27.6 0.0 4.1 5 0 0 5 5 4 2 AAA ATPase domain AAA_2 PF07724.9 gi|284161924|ref|YP_003400547.1| - 2.5e-13 50.3 0.4 5.9e-07 29.5 0.0 4.6 4 0 0 4 4 4 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|284161924|ref|YP_003400547.1| - 3.8e-13 49.7 0.1 0.00044 20.3 0.0 4.6 3 1 0 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|284161924|ref|YP_003400547.1| - 1.4e-10 42.0 12.7 9.8e-05 23.1 0.0 5.1 6 1 0 6 6 4 2 AAA domain AAA_5 PF07728.9 gi|284161924|ref|YP_003400547.1| - 1.8e-10 40.6 0.8 0.0015 18.2 0.0 4.3 3 1 0 3 3 3 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|284161924|ref|YP_003400547.1| - 1.3e-09 37.2 0.1 0.00057 18.7 0.0 2.9 2 1 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|284161924|ref|YP_003400547.1| - 5.2e-09 35.7 0.8 0.0048 16.6 0.1 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_33 PF13671.1 gi|284161924|ref|YP_003400547.1| - 1.5e-08 34.6 0.0 0.0034 17.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|284161924|ref|YP_003400547.1| - 1.5e-08 34.0 0.2 0.0032 16.5 0.0 2.9 3 0 0 3 3 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|284161924|ref|YP_003400547.1| - 2.4e-08 33.5 0.2 0.0019 17.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.1 gi|284161924|ref|YP_003400547.1| - 2.6e-08 33.8 0.0 0.00019 21.3 0.0 3.8 3 1 0 4 4 3 1 AAA domain Intein_splicing PF14890.1 gi|284161924|ref|YP_003400547.1| - 5.2e-08 32.1 3.8 1.4e-06 27.4 0.8 3.1 2 1 0 2 2 2 1 Intein splicing domain Vps4_C PF09336.5 gi|284161924|ref|YP_003400547.1| - 1.4e-07 31.2 2.2 5.7e-05 22.9 0.1 3.5 3 0 0 3 3 3 1 Vps4 C terminal oligomerisation domain AAA_18 PF13238.1 gi|284161924|ref|YP_003400547.1| - 1.8e-07 31.4 1.1 0.027 14.7 0.0 3.5 3 1 0 3 3 2 2 AAA domain AAA_28 PF13521.1 gi|284161924|ref|YP_003400547.1| - 2.5e-07 30.7 0.0 0.014 15.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|284161924|ref|YP_003400547.1| - 7.8e-07 29.2 0.0 0.05 13.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|284161924|ref|YP_003400547.1| - 1e-06 28.3 4.1 0.19 11.1 0.0 4.6 3 1 1 4 4 4 2 AAA domain Mg_chelatase PF01078.16 gi|284161924|ref|YP_003400547.1| - 1.4e-06 27.6 0.7 0.053 12.6 0.0 2.9 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|284161924|ref|YP_003400547.1| - 8.3e-06 25.4 0.0 0.32 10.6 0.0 3.2 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|284161924|ref|YP_003400547.1| - 1e-05 25.2 0.8 0.094 12.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|284161924|ref|YP_003400547.1| - 1.1e-05 24.9 0.1 0.59 9.5 0.0 4.1 4 1 0 4 4 3 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|284161924|ref|YP_003400547.1| - 1.4e-05 24.0 0.0 0.19 10.5 0.0 3.3 4 0 0 4 4 3 2 NB-ARC domain KaiC PF06745.8 gi|284161924|ref|YP_003400547.1| - 2.7e-05 23.4 0.1 0.41 9.7 0.0 4.2 4 0 0 4 4 4 2 KaiC Parvo_NS1 PF01057.12 gi|284161924|ref|YP_003400547.1| - 3.3e-05 22.8 0.0 0.13 11.1 0.0 2.5 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF815 PF05673.8 gi|284161924|ref|YP_003400547.1| - 5.3e-05 22.2 0.0 0.2 10.5 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|284161924|ref|YP_003400547.1| - 0.0001 21.4 0.0 0.35 9.7 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) LAGLIDADG_WhiA PF14527.1 gi|284161924|ref|YP_003400547.1| - 0.00011 22.0 4.4 0.15 11.9 0.1 3.6 4 0 0 4 4 3 2 WhiA LAGLIDADG-like domain Sigma54_activ_2 PF14532.1 gi|284161924|ref|YP_003400547.1| - 0.00012 22.1 0.0 0.35 10.9 0.0 2.8 2 0 0 2 2 2 2 Sigma-54 interaction domain Bac_DnaA PF00308.13 gi|284161924|ref|YP_003400547.1| - 0.00013 21.6 2.5 1.2 8.7 0.0 4.0 4 1 0 4 4 3 1 Bacterial dnaA protein PhoH PF02562.11 gi|284161924|ref|YP_003400547.1| - 0.00013 21.2 0.4 0.38 9.9 0.1 2.6 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.7 gi|284161924|ref|YP_003400547.1| - 0.00018 21.1 0.4 0.86 9.2 0.0 3.8 5 0 0 5 5 3 1 NACHT domain AAA_11 PF13086.1 gi|284161924|ref|YP_003400547.1| - 0.00021 20.9 0.6 0.65 9.5 0.0 3.3 3 1 0 3 3 3 1 AAA domain ABC_tran PF00005.22 gi|284161924|ref|YP_003400547.1| - 0.00029 21.1 0.0 2.1 8.6 0.0 3.5 3 0 0 3 3 2 1 ABC transporter NTPase_1 PF03266.10 gi|284161924|ref|YP_003400547.1| - 0.00046 19.9 3.6 1.4 8.6 0.0 4.3 4 1 1 5 5 4 2 NTPase AAA_30 PF13604.1 gi|284161924|ref|YP_003400547.1| - 0.0017 17.9 0.0 3 7.3 0.0 2.8 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|284161924|ref|YP_003400547.1| - 0.0037 16.8 0.0 4.2 7.0 0.0 2.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|284161924|ref|YP_003400547.1| - 0.0048 15.8 0.0 1.8 7.4 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein ResIII PF04851.10 gi|284161924|ref|YP_003400547.1| - 0.0086 15.9 0.0 3.1 7.5 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Hint PF01079.15 gi|284161924|ref|YP_003400547.1| - 0.0094 15.1 0.1 0.019 14.1 0.0 1.4 1 0 0 1 1 1 1 Hint module SKI PF01202.17 gi|284161924|ref|YP_003400547.1| - 0.018 14.9 5.9 1.2 8.9 0.0 3.5 4 0 0 4 4 3 0 Shikimate kinase ATP-synt_ab PF00006.20 gi|284161924|ref|YP_003400547.1| - 0.02 14.4 0.0 5.6 6.3 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain E1-E2_ATPase PF00122.15 gi|284161924|ref|YP_003400547.1| - 0.036 13.1 0.1 0.078 12.0 0.0 1.5 1 0 0 1 1 1 0 E1-E2 ATPase Hom_end PF05204.9 gi|284161924|ref|YP_003400547.1| - 0.098 12.6 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Homing endonuclease LAGLIDADG_1 PF00961.14 gi|284161924|ref|YP_003400547.1| - 0.16 12.5 0.6 1.1 9.7 0.1 2.4 2 0 0 2 2 2 0 LAGLIDADG endonuclease HTH_WhiA PF02650.9 gi|284161924|ref|YP_003400547.1| - 1.4 9.3 4.8 7.2 7.0 0.1 3.4 3 0 0 3 3 2 0 WhiA C-terminal HTH domain 4HB_MCP_1 PF12729.2 gi|284161924|ref|YP_003400547.1| - 4.2 6.6 9.8 0.39 10.0 0.1 2.5 3 0 0 3 3 2 0 Four helix bundle sensory module for signal transduction HTH_5 PF01022.15 gi|284161925|ref|YP_003400548.1| - 4.6e-16 58.2 0.8 2.2e-13 49.6 0.2 2.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|284161925|ref|YP_003400548.1| - 3.8e-15 55.4 0.2 1.3e-11 44.1 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|284161925|ref|YP_003400548.1| - 1.3e-10 40.8 3.5 0.00034 20.2 0.1 3.1 3 1 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284161925|ref|YP_003400548.1| - 1.8e-09 36.8 0.5 0.0023 17.3 0.1 2.9 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284161925|ref|YP_003400548.1| - 7.6e-09 35.1 0.2 0.0036 16.9 0.0 2.5 2 0 0 2 2 2 2 MarR family MarR PF01047.17 gi|284161925|ref|YP_003400548.1| - 1.5e-08 34.2 0.8 0.0055 16.3 0.0 3.2 3 1 0 3 3 3 2 MarR family HTH_Crp_2 PF13545.1 gi|284161925|ref|YP_003400548.1| - 2.9e-08 33.3 0.0 0.00068 19.3 0.0 2.6 2 1 0 2 2 2 2 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|284161925|ref|YP_003400548.1| - 3.3e-06 26.5 1.0 0.041 13.4 0.0 2.9 3 0 0 3 3 3 2 LexA DNA binding domain Rrf2 PF02082.15 gi|284161925|ref|YP_003400548.1| - 4.4e-06 26.7 0.1 0.0027 17.7 0.0 2.8 3 0 0 3 3 3 1 Transcriptional regulator DUF2250 PF10007.4 gi|284161925|ref|YP_003400548.1| - 1.3e-05 24.9 0.6 0.0097 15.7 0.0 2.6 3 0 0 3 3 2 1 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|284161925|ref|YP_003400548.1| - 1.4e-05 24.9 0.3 0.19 11.6 0.0 3.4 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain HTH_CodY PF08222.6 gi|284161925|ref|YP_003400548.1| - 0.00018 20.7 0.0 0.19 11.0 0.0 2.4 2 0 0 2 2 2 2 CodY helix-turn-helix domain GntR PF00392.16 gi|284161925|ref|YP_003400548.1| - 0.00032 20.0 0.1 0.0037 16.6 0.2 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.11 gi|284161925|ref|YP_003400548.1| - 0.00041 20.4 0.5 0.96 9.5 0.0 3.3 3 1 0 3 3 3 1 Penicillinase repressor HTH_27 PF13463.1 gi|284161925|ref|YP_003400548.1| - 0.00043 20.5 0.1 0.13 12.6 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|284161925|ref|YP_003400548.1| - 0.00064 19.4 0.3 0.18 11.6 0.0 3.0 2 1 0 3 3 3 1 Winged helix-turn-helix FaeA PF04703.7 gi|284161925|ref|YP_003400548.1| - 0.00079 19.5 0.1 0.83 9.8 0.0 2.4 2 0 0 2 2 2 1 FaeA-like protein DUF4423 PF14394.1 gi|284161925|ref|YP_003400548.1| - 0.0014 18.2 0.2 1.1 8.8 0.1 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4423) PadR PF03551.9 gi|284161925|ref|YP_003400548.1| - 0.0016 18.1 1.6 0.94 9.2 0.1 3.2 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family EAP30 PF04157.11 gi|284161925|ref|YP_003400548.1| - 0.0025 17.0 0.6 0.82 8.7 0.2 2.4 2 1 0 2 2 2 1 EAP30/Vps36 family DUF892 PF05974.7 gi|284161925|ref|YP_003400548.1| - 0.0035 17.1 0.1 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF892) HemN_C PF06969.11 gi|284161925|ref|YP_003400548.1| - 0.0047 16.9 0.2 0.025 14.6 0.1 2.2 2 1 0 2 2 2 1 HemN C-terminal domain HxlR PF01638.12 gi|284161925|ref|YP_003400548.1| - 0.0049 16.4 0.3 3.1 7.4 0.0 2.7 2 1 0 2 2 2 1 HxlR-like helix-turn-helix DDE_Tnp_2 PF04693.7 gi|284161925|ref|YP_003400548.1| - 0.0088 15.0 0.2 0.14 11.1 0.1 2.1 2 0 0 2 2 2 1 Archaeal putative transposase ISC1217 FeoC PF09012.5 gi|284161925|ref|YP_003400548.1| - 0.0088 15.7 0.0 2.6 7.8 0.0 2.5 2 0 0 2 2 2 1 FeoC like transcriptional regulator DDRGK PF09756.4 gi|284161925|ref|YP_003400548.1| - 0.0095 15.3 0.9 0.53 9.6 0.0 2.7 1 1 2 3 3 3 1 DDRGK domain PaaX PF07848.7 gi|284161925|ref|YP_003400548.1| - 0.012 15.6 0.4 1.4 8.9 0.1 2.9 3 0 0 3 3 3 0 PaaX-like protein HTH_29 PF13551.1 gi|284161925|ref|YP_003400548.1| - 0.022 14.8 0.1 8.2 6.6 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix DUF387 PF04079.11 gi|284161925|ref|YP_003400548.1| - 0.025 13.9 1.5 0.16 11.3 0.2 2.2 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) HTH_34 PF13601.1 gi|284161925|ref|YP_003400548.1| - 0.032 14.2 0.1 0.85 9.6 0.0 2.5 2 1 0 2 2 2 0 Winged helix DNA-binding domain IF2_N PF04760.10 gi|284161925|ref|YP_003400548.1| - 0.033 13.8 0.0 0.13 11.9 0.0 2.1 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region B-block_TFIIIC PF04182.7 gi|284161925|ref|YP_003400548.1| - 0.036 13.9 0.0 2 8.3 0.0 2.6 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC DUF45 PF01863.12 gi|284161925|ref|YP_003400548.1| - 0.036 13.8 0.1 0.048 13.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF45 Sulfolobus_pRN PF05584.6 gi|284161925|ref|YP_003400548.1| - 0.039 13.9 0.2 7.6 6.5 0.0 2.7 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein Cep57_CLD PF14073.1 gi|284161925|ref|YP_003400548.1| - 0.042 13.6 0.1 0.065 13.0 0.1 1.4 1 0 0 1 1 1 0 Centrosome localisation domain of Cep57 HTH_IclR PF09339.5 gi|284161925|ref|YP_003400548.1| - 0.045 13.3 0.1 0.39 10.3 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_12 PF08461.5 gi|284161925|ref|YP_003400548.1| - 0.048 13.3 1.0 1.2 8.8 0.0 3.1 3 1 0 3 3 3 0 Ribonuclease R winged-helix domain Phage_pRha PF09669.5 gi|284161925|ref|YP_003400548.1| - 0.073 13.4 0.3 23 5.4 0.0 2.9 3 1 0 3 3 3 0 Phage regulatory protein Rha (Phage_pRha) Fibrillarin PF01269.12 gi|284161926|ref|YP_003400549.1| - 4.1e-73 245.0 1.1 4.8e-73 244.8 0.8 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_18 PF12847.2 gi|284161926|ref|YP_003400549.1| - 0.055 14.0 0.0 0.099 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Hydrolase_3 PF08282.7 gi|284161927|ref|YP_003400550.1| - 1.3e-38 133.0 3.2 4.8e-26 91.8 0.3 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|284161927|ref|YP_003400550.1| - 8.6e-13 48.1 0.1 1.2e-10 41.0 0.0 2.3 2 1 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|284161927|ref|YP_003400550.1| - 8.4e-10 39.4 8.4 1e-06 29.3 1.5 3.3 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284161927|ref|YP_003400550.1| - 3.5e-09 37.1 1.8 4.5e-07 30.2 0.0 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|284161927|ref|YP_003400550.1| - 0.0019 18.0 0.0 0.0061 16.4 0.0 1.9 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|284161927|ref|YP_003400550.1| - 0.03 14.5 1.0 1.4 9.1 0.0 2.7 3 1 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284161927|ref|YP_003400550.1| - 0.062 13.0 0.3 0.16 11.6 0.1 1.8 2 0 0 2 2 2 0 HAD-hyrolase-like Trehalose_PPase PF02358.11 gi|284161927|ref|YP_003400550.1| - 0.11 11.4 0.1 2.1 7.1 0.1 2.1 2 0 0 2 2 2 0 Trehalose-phosphatase tRNA-synt_2d PF01409.15 gi|284161928|ref|YP_003400551.1| - 3e-95 318.1 0.0 3.9e-95 317.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DUF2582 PF10771.4 gi|284161928|ref|YP_003400551.1| - 6e-05 22.8 0.0 0.00025 20.8 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) tRNA-synt_2 PF00152.15 gi|284161928|ref|YP_003400551.1| - 0.00048 19.0 1.9 0.024 13.3 0.0 3.2 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|284161928|ref|YP_003400551.1| - 0.0028 17.2 0.1 0.0064 16.0 0.1 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) FeoC PF09012.5 gi|284161928|ref|YP_003400551.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Nitro_FeMo-Co PF02579.12 gi|284161929|ref|YP_003400552.1| - 2.1e-21 75.8 0.0 2.5e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DeoC PF01791.4 gi|284161930|ref|YP_003400553.1| - 4.1e-59 199.7 0.1 5e-59 199.4 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase TMP-TENI PF02581.12 gi|284161930|ref|YP_003400553.1| - 0.00062 18.9 0.1 0.031 13.3 0.1 2.4 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI PEP_mutase PF13714.1 gi|284161930|ref|YP_003400553.1| - 0.01 15.1 1.6 2.3 7.3 0.1 2.7 2 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase Dus PF01207.12 gi|284161930|ref|YP_003400553.1| - 0.011 14.5 0.6 2.8 6.6 0.1 2.6 3 0 0 3 3 3 0 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|284161930|ref|YP_003400553.1| - 0.012 14.7 3.0 0.016 14.2 1.2 1.8 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DUF561 PF04481.7 gi|284161930|ref|YP_003400553.1| - 0.051 12.5 0.7 0.071 12.0 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) DUF1628 PF07790.6 gi|284161931|ref|YP_003400554.1| - 2.6e-23 82.5 1.0 5e-23 81.6 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) G3P_acyltransf PF02660.10 gi|284161931|ref|YP_003400554.1| - 0.074 12.6 1.3 0.1 12.1 0.9 1.2 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase Arch_flagellin PF01917.11 gi|284161931|ref|YP_003400554.1| - 1.7 8.2 4.0 2.5 7.6 2.8 1.4 1 1 0 1 1 1 0 Archaebacterial flagellin GATase_5 PF13507.1 gi|284161933|ref|YP_003400556.1| - 1.5e-64 217.3 0.0 1.7e-64 217.2 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|284161933|ref|YP_003400556.1| - 2.7e-07 30.2 0.0 4e-06 26.4 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|284161933|ref|YP_003400556.1| - 0.00012 21.5 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|284161933|ref|YP_003400556.1| - 0.00033 20.2 0.0 0.00063 19.3 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|284161933|ref|YP_003400556.1| - 0.034 13.5 0.0 0.058 12.8 0.0 1.4 1 0 0 1 1 1 0 Peptidase C26 DUF4066 PF13278.1 gi|284161933|ref|YP_003400556.1| - 0.055 12.7 0.0 0.084 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase DUF4405 PF14358.1 gi|284161934|ref|YP_003400557.1| - 4.5e-14 52.3 5.3 5.4e-14 52.0 3.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ferric_reduct PF01794.14 gi|284161934|ref|YP_003400557.1| - 0.0042 17.1 3.1 0.0052 16.8 2.2 1.2 1 0 0 1 1 1 1 Ferric reductase like transmembrane component Ni_hydr_CYTB PF01292.15 gi|284161934|ref|YP_003400557.1| - 0.0048 16.3 4.1 0.0063 15.9 2.8 1.2 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|284161934|ref|YP_003400557.1| - 0.012 14.9 5.1 0.014 14.7 3.5 1.1 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF309 PF03745.9 gi|284161934|ref|YP_003400557.1| - 0.031 13.7 0.3 0.069 12.6 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF309) DUF4079 PF13301.1 gi|284161934|ref|YP_003400557.1| - 0.031 14.2 2.3 0.05 13.6 1.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) Cation_ATPase_C PF00689.16 gi|284161934|ref|YP_003400557.1| - 0.056 12.9 1.3 1.1 8.7 0.1 2.0 2 0 0 2 2 2 0 Cation transporting ATPase, C-terminus YtpI PF14007.1 gi|284161934|ref|YP_003400557.1| - 0.14 12.1 1.9 2.1 8.3 0.1 2.1 2 0 0 2 2 2 0 YtpI-like protein DUF2157 PF09925.4 gi|284161934|ref|YP_003400557.1| - 0.68 9.5 4.5 4.1 7.0 0.1 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) DHH PF01368.15 gi|284161935|ref|YP_003400558.1| - 4.5e-11 42.5 0.0 9.3e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|284161935|ref|YP_003400558.1| - 7.3e-10 38.5 1.4 2.5e-09 36.8 1.0 2.0 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|284161935|ref|YP_003400558.1| - 5.2e-07 29.6 0.7 2.2e-06 27.6 0.5 2.2 1 0 0 1 1 1 1 S1 RNA binding domain DnaJ_CXXCXGXG PF00684.14 gi|284161935|ref|YP_003400558.1| - 8.6e-05 22.5 22.6 0.036 14.1 6.7 2.5 2 0 0 2 2 2 2 DnaJ central domain tRNA_anti-like PF12869.2 gi|284161935|ref|YP_003400558.1| - 0.015 14.8 0.2 0.029 13.8 0.1 1.4 1 0 0 1 1 1 0 tRNA_anti-like DZR PF12773.2 gi|284161935|ref|YP_003400558.1| - 0.16 11.7 18.7 0.089 12.6 5.8 2.6 2 1 0 2 2 2 0 Double zinc ribbon GATase PF00117.23 gi|284161937|ref|YP_003400560.1| - 3.9e-31 107.9 0.0 4.4e-31 107.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|284161937|ref|YP_003400560.1| - 3e-08 33.4 0.1 1.3e-07 31.4 0.1 1.8 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|284161937|ref|YP_003400560.1| - 2.3e-06 27.1 0.2 9.1e-06 25.2 0.1 1.9 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|284161937|ref|YP_003400560.1| - 0.022 14.3 0.1 0.042 13.4 0.1 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_4 PF13230.1 gi|284161938|ref|YP_003400561.1| - 0.045 12.4 0.0 0.069 11.8 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II HAD PF12710.2 gi|284161939|ref|YP_003400562.1| - 9.3e-06 25.9 0.0 2.9e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Lipase_GDSL PF00657.17 gi|284161939|ref|YP_003400562.1| - 0.0023 17.8 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase Hydrolase_3 PF08282.7 gi|284161939|ref|YP_003400562.1| - 0.12 11.9 0.1 0.53 9.8 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Thioredoxin PF00085.15 gi|284161940|ref|YP_003400563.1| - 1.4e-15 56.8 0.0 1.6e-15 56.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|284161940|ref|YP_003400563.1| - 7.4e-07 29.3 0.1 4.2e-06 26.9 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|284161940|ref|YP_003400563.1| - 1e-05 25.2 0.0 1.8e-05 24.4 0.0 1.5 1 1 1 2 2 2 1 Thioredoxin domain Thioredoxin_4 PF13462.1 gi|284161940|ref|YP_003400563.1| - 0.00049 20.1 0.0 0.0006 19.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.6 gi|284161940|ref|YP_003400563.1| - 0.0013 18.5 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|284161940|ref|YP_003400563.1| - 0.0048 17.1 0.0 0.0053 16.9 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.1 gi|284161940|ref|YP_003400563.1| - 0.013 15.5 0.1 0.041 13.9 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin-like Toxin-deaminase PF14424.1 gi|284161940|ref|YP_003400563.1| - 0.046 13.7 0.3 0.28 11.1 0.2 1.9 1 1 0 1 1 1 0 The BURPS668_1122 family of deaminases Glutaredoxin PF00462.19 gi|284161940|ref|YP_003400563.1| - 0.068 13.1 0.1 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin AhpC-TSA PF00578.16 gi|284161940|ref|YP_003400563.1| - 0.12 12.0 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA family HxlR PF01638.12 gi|284161941|ref|YP_003400564.1| - 1.7e-06 27.5 0.2 2.2e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|284161941|ref|YP_003400564.1| - 5.3e-06 26.1 0.3 8.5e-06 25.5 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|284161941|ref|YP_003400564.1| - 1.1e-05 25.6 0.1 1.9e-05 24.8 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|284161941|ref|YP_003400564.1| - 3.5e-05 23.4 0.2 6.2e-05 22.6 0.1 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|284161941|ref|YP_003400564.1| - 0.00012 21.6 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|284161941|ref|YP_003400564.1| - 0.00048 19.7 0.0 0.0017 17.9 0.0 1.9 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284161941|ref|YP_003400564.1| - 0.00065 19.0 0.1 0.0046 16.3 0.0 2.3 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|284161941|ref|YP_003400564.1| - 0.0015 17.9 1.2 0.0021 17.5 0.8 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|284161941|ref|YP_003400564.1| - 0.0018 17.9 0.1 0.003 17.2 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|284161941|ref|YP_003400564.1| - 0.013 15.3 0.5 0.048 13.5 0.4 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) FUR PF01475.14 gi|284161941|ref|YP_003400564.1| - 0.019 14.9 1.1 0.1 12.5 0.1 2.1 1 1 0 2 2 2 0 Ferric uptake regulator family HTH_20 PF12840.2 gi|284161941|ref|YP_003400564.1| - 0.038 13.8 0.1 0.15 11.8 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|284161941|ref|YP_003400564.1| - 0.099 12.2 0.0 0.34 10.5 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|284161941|ref|YP_003400564.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix IF3_C PF00707.17 gi|284161943|ref|YP_003400566.1| - 0.033 13.9 0.1 0.035 13.8 0.1 1.1 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain HALZ PF02183.13 gi|284161944|ref|YP_003400567.1| - 0.00033 20.3 5.1 0.00033 20.3 3.5 1.8 2 0 0 2 2 2 1 Homeobox associated leucine zipper FlaC_arch PF05377.6 gi|284161944|ref|YP_003400567.1| - 0.0013 18.5 4.9 0.0072 16.2 2.6 2.5 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) Kinesin-related PF06548.6 gi|284161944|ref|YP_003400567.1| - 0.002 16.7 1.9 0.0023 16.5 1.3 1.1 1 0 0 1 1 1 1 Kinesin-related DUF1640 PF07798.6 gi|284161944|ref|YP_003400567.1| - 0.0026 17.8 1.9 0.0053 16.8 1.3 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1640) Phage_GP20 PF06810.6 gi|284161944|ref|YP_003400567.1| - 0.0043 16.5 0.2 0.0043 16.5 0.1 1.5 2 0 0 2 2 1 1 Phage minor structural protein GP20 Hemerythrin PF01814.18 gi|284161944|ref|YP_003400567.1| - 0.008 16.3 2.6 0.024 14.7 1.8 1.8 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain L_lactis_ph-MCP PF06673.6 gi|284161944|ref|YP_003400567.1| - 0.011 14.6 0.7 0.013 14.2 0.5 1.1 1 0 0 1 1 1 0 Lactococcus lactis bacteriophage major capsid protein COG2 PF06148.6 gi|284161944|ref|YP_003400567.1| - 0.012 15.5 0.4 0.034 14.0 0.1 1.9 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Rsbr_N PF08678.5 gi|284161944|ref|YP_003400567.1| - 0.032 14.1 0.4 0.61 9.9 0.2 2.2 1 1 1 2 2 2 0 Rsbr N terminal DivIC PF04977.10 gi|284161944|ref|YP_003400567.1| - 0.033 13.6 2.2 0.053 13.0 1.0 1.7 2 0 0 2 2 2 0 Septum formation initiator DUF972 PF06156.8 gi|284161944|ref|YP_003400567.1| - 0.041 14.2 1.1 0.13 12.5 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Med4 PF10018.4 gi|284161944|ref|YP_003400567.1| - 0.042 13.2 0.8 0.058 12.7 0.6 1.3 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 ACCA PF03255.9 gi|284161944|ref|YP_003400567.1| - 0.042 13.3 0.4 0.094 12.2 0.3 1.6 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF939_C PF11728.3 gi|284161944|ref|YP_003400567.1| - 0.053 13.3 1.0 0.096 12.4 0.4 1.6 1 1 1 2 2 2 0 DUF939 C-terminal domain Golgin_A5 PF09787.4 gi|284161944|ref|YP_003400567.1| - 0.059 11.8 0.5 0.076 11.5 0.4 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 Decorin_bind PF02352.10 gi|284161944|ref|YP_003400567.1| - 0.069 13.1 0.2 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Decorin binding protein bZIP_1 PF00170.16 gi|284161944|ref|YP_003400567.1| - 0.08 12.9 4.8 0.28 11.1 3.3 2.0 1 1 0 1 1 1 0 bZIP transcription factor Tnp_P_element PF12017.3 gi|284161944|ref|YP_003400567.1| - 0.14 11.3 0.2 0.21 10.7 0.1 1.2 1 0 0 1 1 1 0 Transposase protein DivIVA PF05103.8 gi|284161944|ref|YP_003400567.1| - 0.28 11.2 6.6 1.4 9.0 4.2 2.2 1 1 1 2 2 2 0 DivIVA protein AAA_23 PF13476.1 gi|284161944|ref|YP_003400567.1| - 0.66 10.2 5.3 0.94 9.7 3.7 1.2 1 0 0 1 1 1 0 AAA domain Pox_A_type_inc PF04508.7 gi|284161944|ref|YP_003400567.1| - 0.8 9.6 6.9 0.2 11.5 1.9 2.3 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat HalX PF08663.5 gi|284161944|ref|YP_003400567.1| - 0.82 9.6 3.9 4.1 7.4 0.6 2.6 1 1 1 2 2 2 0 HalX domain Atg14 PF10186.4 gi|284161944|ref|YP_003400567.1| - 0.97 8.3 3.4 0.63 8.9 1.1 1.4 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|284161944|ref|YP_003400567.1| - 2.8 7.4 6.0 4.1 6.9 4.2 1.3 1 1 0 1 1 1 0 IncA protein MCM PF00493.18 gi|284161945|ref|YP_003400568.1| - 2.9e-123 410.8 1.2 4e-123 410.4 0.8 1.2 1 0 0 1 1 1 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|284161945|ref|YP_003400568.1| - 5.6e-12 45.2 0.2 5.6e-10 38.7 0.1 2.5 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|284161945|ref|YP_003400568.1| - 7.4e-06 25.7 0.0 1.9e-05 24.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|284161945|ref|YP_003400568.1| - 0.00053 19.5 0.0 0.00099 18.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.5 gi|284161945|ref|YP_003400568.1| - 0.0007 19.4 0.6 0.0016 18.3 0.4 1.6 1 0 0 1 1 1 1 Zinc ribbon domain MCM_N PF14551.1 gi|284161945|ref|YP_003400568.1| - 0.0048 17.3 0.8 0.0048 17.3 0.6 3.3 3 1 0 3 3 3 1 MCM N-terminal domain RNHCP PF12647.2 gi|284161945|ref|YP_003400568.1| - 0.025 14.4 1.0 0.048 13.4 0.7 1.4 1 0 0 1 1 1 0 RNHCP domain P_proprotein PF01483.15 gi|284161945|ref|YP_003400568.1| - 0.11 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Proprotein convertase P-domain DUF2540 PF10802.3 gi|284161945|ref|YP_003400568.1| - 0.16 11.6 3.1 0.16 11.6 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2540) RPA_C PF08784.6 gi|284161945|ref|YP_003400568.1| - 0.17 12.3 0.0 0.53 10.7 0.0 1.8 1 0 0 1 1 1 0 Replication protein A C terminal zinc_ribbon_2 PF13240.1 gi|284161945|ref|YP_003400568.1| - 0.18 11.3 3.2 3.7 7.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain INCENP_N PF12178.3 gi|284161947|ref|YP_003400570.1| - 0.17 11.4 0.9 0.66 9.5 0.0 2.4 3 0 0 3 3 3 0 Chromosome passenger complex (CPC) protein INCENP N terminal Antitoxin-MazE PF04014.13 gi|284161947|ref|YP_003400570.1| - 1.1 9.0 4.0 3.1 7.6 0.1 2.9 3 0 0 3 3 3 0 Antidote-toxin recognition MazE DUF3647 PF12363.3 gi|284161948|ref|YP_003400571.1| - 0.05 13.6 0.1 0.078 13.0 0.1 1.4 1 1 0 1 1 1 0 Phage protein DUF104 PF01954.11 gi|284161950|ref|YP_003400573.1| - 0.51 10.4 3.3 0.55 10.3 0.4 2.3 2 1 0 2 2 2 0 Protein of unknown function DUF104 MarR_2 PF12802.2 gi|284161951|ref|YP_003400574.1| - 0.00052 19.6 0.0 0.00064 19.3 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|284161951|ref|YP_003400574.1| - 0.026 14.2 0.0 0.033 13.8 0.0 1.3 1 1 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.11 gi|284161951|ref|YP_003400574.1| - 0.057 12.9 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain Penicillinase_R PF03965.11 gi|284161951|ref|YP_003400574.1| - 0.088 12.9 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor Rrf2 PF02082.15 gi|284161951|ref|YP_003400574.1| - 0.13 12.3 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|284161952|ref|YP_003400575.1| - 0.036 13.7 0.4 0.79 9.4 0.0 2.4 3 0 0 3 3 3 0 MarR family HTH_5 PF01022.15 gi|284161952|ref|YP_003400575.1| - 0.047 13.3 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4435 PF14491.1 gi|284161953|ref|YP_003400576.1| - 0.0021 17.9 0.1 0.0024 17.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4435) DUF1835 PF08874.5 gi|284161954|ref|YP_003400577.1| - 0.049 13.5 0.1 0.057 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1835) Resolvase PF00239.16 gi|284161956|ref|YP_003400579.1| - 4.9e-39 133.4 0.4 6.3e-39 133.0 0.3 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_32 PF13565.1 gi|284161956|ref|YP_003400579.1| - 0.0023 18.6 3.0 0.0075 17.0 1.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.13 gi|284161956|ref|YP_003400579.1| - 0.0031 17.5 0.1 1.2 9.2 0.0 2.7 1 1 1 2 2 2 2 Transposase Tox-URI2 PF15653.1 gi|284161956|ref|YP_003400579.1| - 0.038 14.1 1.6 0.34 11.1 0.1 2.8 3 1 1 4 4 4 0 URI fold toxin 2 DUF497 PF04365.8 gi|284161957|ref|YP_003400580.1| - 0.00043 20.1 0.1 0.00072 19.4 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF497) DUF104 PF01954.11 gi|284161958|ref|YP_003400581.1| - 0.26 11.3 5.2 1.4 9.0 3.6 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF104 Laminin_G_3 PF13385.1 gi|284161960|ref|YP_003400583.1| - 7.8e-29 100.9 4.1 1.3e-28 100.1 1.2 2.4 2 1 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Toxin_R_bind_N PF07953.7 gi|284161960|ref|YP_003400583.1| - 0.0001 21.8 0.8 0.00026 20.5 0.2 2.0 2 1 0 2 2 2 1 Clostridium neurotoxin, N-terminal receptor binding PepSY PF03413.14 gi|284161961|ref|YP_003400584.1| - 0.0082 16.7 0.1 0.022 15.3 0.1 1.7 1 0 0 1 1 1 1 Peptidase propeptide and YPEB domain FliD_N PF02465.13 gi|284161961|ref|YP_003400584.1| - 0.084 13.2 0.2 0.24 11.7 0.1 1.8 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus FG-GAP PF01839.18 gi|284161961|ref|YP_003400584.1| - 0.91 9.2 7.2 1.6 8.5 0.1 2.8 3 0 0 3 3 3 0 FG-GAP repeat Peptidase_S8 PF00082.17 gi|284161962|ref|YP_003400585.1| - 7.2e-57 192.6 0.2 9e-57 192.3 0.1 1.1 1 0 0 1 1 1 1 Subtilase family DUF2949 PF11165.3 gi|284161963|ref|YP_003400586.1| - 0.059 13.5 1.3 0.12 12.6 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2949) UCR_6-4kD PF08997.5 gi|284161963|ref|YP_003400586.1| - 2.1 8.0 5.1 1.7 8.4 2.0 2.0 1 1 1 2 2 2 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein Flavi_NS2A PF01005.14 gi|284161965|ref|YP_003400588.1| - 0.032 13.5 1.7 0.033 13.4 1.1 1.2 1 1 0 1 1 1 0 Flavivirus non-structural protein NS2A DUF897 PF05982.7 gi|284161965|ref|YP_003400588.1| - 0.045 12.5 2.0 0.047 12.4 1.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF897) DUF3995 PF13160.1 gi|284161965|ref|YP_003400588.1| - 0.14 12.1 1.4 0.15 12.0 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3995) DUF3784 PF12650.2 gi|284161965|ref|YP_003400588.1| - 1.9 8.5 5.5 1.9 8.5 3.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) Baculo_11_kDa PF06143.6 gi|284161965|ref|YP_003400588.1| - 2.6 7.4 4.8 3.4 7.0 3.3 1.3 1 1 0 1 1 1 0 Baculovirus 11 kDa family LHC PF00556.15 gi|284161965|ref|YP_003400588.1| - 5 7.0 7.2 2.7 7.9 0.2 2.5 1 1 1 2 2 2 0 Antenna complex alpha/beta subunit DUF3139 PF11337.3 gi|284161965|ref|YP_003400588.1| - 7.3 6.9 6.2 1.2 9.5 1.6 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3139) ATP_synt_I PF03899.10 gi|284161966|ref|YP_003400589.1| - 2.3 8.4 18.1 6.8e+02 0.5 12.6 2.1 1 1 0 1 1 1 0 ATP synthase I chain Form-deh_trans PF09163.6 gi|284161969|ref|YP_003400592.1| - 0.017 14.6 0.3 0.035 13.6 0.2 1.4 1 0 0 1 1 1 0 Formate dehydrogenase N, transmembrane TraL PF07178.6 gi|284161969|ref|YP_003400592.1| - 7.3 6.6 6.5 3.8 7.5 1.0 2.0 1 1 1 2 2 2 0 TraL protein Cnl2_NKP2 PF09447.5 gi|284161970|ref|YP_003400593.1| - 0.1 12.2 0.5 0.33 10.6 0.1 2.1 2 1 0 2 2 2 0 Cnl2/NKP2 family protein Toxin_45 PF15524.1 gi|284161971|ref|YP_003400594.1| - 0.085 12.9 0.1 0.093 12.8 0.1 1.2 1 1 0 1 1 1 0 Putative toxin 45 DUF1643 PF07799.7 gi|284161972|ref|YP_003400595.1| - 0.032 13.9 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1643) AAA_17 PF13207.1 gi|284161973|ref|YP_003400596.1| - 0.00028 21.6 0.1 0.01 16.6 0.0 2.6 2 1 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|284161973|ref|YP_003400596.1| - 0.0018 18.1 1.9 0.02 14.7 0.2 2.9 3 1 0 3 3 3 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|284161973|ref|YP_003400596.1| - 0.0028 17.7 0.0 0.01 16.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|284161973|ref|YP_003400596.1| - 0.0044 17.3 0.0 0.0079 16.5 0.0 1.5 1 1 0 1 1 1 1 ABC transporter T2SE PF00437.15 gi|284161973|ref|YP_003400596.1| - 0.0049 15.8 0.1 0.0075 15.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|284161973|ref|YP_003400596.1| - 0.009 16.3 0.1 0.031 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|284161973|ref|YP_003400596.1| - 0.013 15.0 0.1 0.023 14.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|284161973|ref|YP_003400596.1| - 0.014 14.8 0.1 0.085 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain TrwB_AAD_bind PF10412.4 gi|284161973|ref|YP_003400596.1| - 0.034 12.7 0.1 0.084 11.4 0.0 1.6 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Viral_helicase1 PF01443.13 gi|284161973|ref|YP_003400596.1| - 0.041 13.4 0.0 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Thymidylate_kin PF02223.12 gi|284161973|ref|YP_003400596.1| - 0.042 13.2 0.0 0.096 12.0 0.0 1.6 1 0 0 1 1 1 0 Thymidylate kinase MobB PF03205.9 gi|284161973|ref|YP_003400596.1| - 0.044 13.4 0.1 0.088 12.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|284161973|ref|YP_003400596.1| - 0.049 13.1 0.2 0.2 11.1 0.0 2.0 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|284161973|ref|YP_003400596.1| - 0.059 12.8 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|284161973|ref|YP_003400596.1| - 0.059 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|284161973|ref|YP_003400596.1| - 0.076 12.4 0.4 0.14 11.5 0.2 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family OpuAC PF04069.7 gi|284161973|ref|YP_003400596.1| - 0.092 12.0 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system Exo70 PF03081.10 gi|284161973|ref|YP_003400596.1| - 0.1 11.3 0.7 0.43 9.3 0.1 2.0 2 0 0 2 2 2 0 Exo70 exocyst complex subunit Zeta_toxin PF06414.7 gi|284161973|ref|YP_003400596.1| - 0.16 11.0 0.9 0.27 10.2 0.1 1.7 2 0 0 2 2 2 0 Zeta toxin SRP54 PF00448.17 gi|284161973|ref|YP_003400596.1| - 0.74 9.2 3.3 0.48 9.8 0.1 2.2 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain DUF1319 PF07028.6 gi|284161974|ref|YP_003400597.1| - 6.8e-05 23.0 1.0 6.8e-05 23.0 0.7 2.5 3 0 0 3 3 2 1 Protein of unknown function (DUF1319) Rootletin PF15035.1 gi|284161974|ref|YP_003400597.1| - 0.0001 22.3 7.0 0.0001 22.3 4.9 2.3 3 0 0 3 3 2 1 Ciliary rootlet component, centrosome cohesion CENP-Q PF13094.1 gi|284161974|ref|YP_003400597.1| - 0.00017 21.6 2.1 0.00017 21.6 1.5 2.4 2 1 0 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit TMF_DNA_bd PF12329.3 gi|284161974|ref|YP_003400597.1| - 0.00025 20.8 9.3 0.00025 20.8 6.5 2.5 3 0 0 3 3 2 1 TATA element modulatory factor 1 DNA binding DUF972 PF06156.8 gi|284161974|ref|YP_003400597.1| - 0.0025 18.1 5.0 0.0025 18.1 3.5 2.6 3 0 0 3 3 2 1 Protein of unknown function (DUF972) MSC PF09402.5 gi|284161974|ref|YP_003400597.1| - 0.0025 16.5 3.4 0.0025 16.5 2.4 1.8 2 0 0 2 2 2 1 Man1-Src1p-C-terminal domain Syntaxin-6_N PF09177.6 gi|284161974|ref|YP_003400597.1| - 0.003 17.9 3.4 0.26 11.6 0.2 2.7 3 0 0 3 3 2 1 Syntaxin 6, N-terminal V_ATPase_I PF01496.14 gi|284161974|ref|YP_003400597.1| - 0.0031 15.4 4.5 0.0037 15.2 3.1 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF904 PF06005.7 gi|284161974|ref|YP_003400597.1| - 0.0043 17.3 10.9 0.0043 17.3 7.6 3.3 3 0 0 3 3 3 1 Protein of unknown function (DUF904) CASP_C PF08172.7 gi|284161974|ref|YP_003400597.1| - 0.0052 15.8 0.6 0.0052 15.8 0.4 1.7 2 0 0 2 2 2 1 CASP C terminal Atg14 PF10186.4 gi|284161974|ref|YP_003400597.1| - 0.0061 15.5 0.1 0.0061 15.5 0.1 2.2 2 1 0 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 ASD2 PF08687.6 gi|284161974|ref|YP_003400597.1| - 0.0067 15.7 0.3 0.0067 15.7 0.2 1.9 3 0 0 3 3 2 1 Apx/Shroom domain ASD2 APG6 PF04111.7 gi|284161974|ref|YP_003400597.1| - 0.01 14.8 3.3 0.01 14.8 2.3 2.2 2 1 0 2 2 1 0 Autophagy protein Apg6 ADIP PF11559.3 gi|284161974|ref|YP_003400597.1| - 0.011 15.6 5.9 0.014 15.2 1.8 2.4 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DivIC PF04977.10 gi|284161974|ref|YP_003400597.1| - 0.014 14.8 8.0 0.014 14.8 5.6 2.8 3 0 0 3 3 1 0 Septum formation initiator DUF4201 PF13870.1 gi|284161974|ref|YP_003400597.1| - 0.016 14.6 12.1 0.41 10.0 4.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) bZIP_1 PF00170.16 gi|284161974|ref|YP_003400597.1| - 0.019 14.9 9.3 0.019 14.9 6.4 2.7 2 0 0 2 2 2 0 bZIP transcription factor HAP1_N PF04849.8 gi|284161974|ref|YP_003400597.1| - 0.023 13.6 9.8 0.16 10.8 4.2 2.9 2 1 1 3 3 3 0 HAP1 N-terminal conserved region RNA_pol_A_CTD PF03118.10 gi|284161974|ref|YP_003400597.1| - 0.028 13.8 7.3 0.029 13.7 0.0 3.4 3 1 0 3 3 3 0 Bacterial RNA polymerase, alpha chain C terminal domain HALZ PF02183.13 gi|284161974|ref|YP_003400597.1| - 0.032 13.9 7.9 0.032 13.9 5.5 2.3 3 0 0 3 3 1 0 Homeobox associated leucine zipper Cep57_MT_bd PF06657.8 gi|284161974|ref|YP_003400597.1| - 0.034 14.1 2.4 0.034 14.1 1.6 2.7 3 0 0 3 3 2 0 Centrosome microtubule-binding domain of Cep57 Seadorna_VP6 PF07407.6 gi|284161974|ref|YP_003400597.1| - 0.041 12.6 0.7 0.059 12.1 0.5 1.3 1 0 0 1 1 1 0 Seadornavirus VP6 protein Tektin PF03148.9 gi|284161974|ref|YP_003400597.1| - 0.054 12.0 7.0 0.078 11.5 2.1 2.2 2 0 0 2 2 2 0 Tektin family Hemerythrin PF01814.18 gi|284161974|ref|YP_003400597.1| - 0.059 13.5 1.6 0.25 11.5 0.1 2.3 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain CDC37_N PF03234.9 gi|284161974|ref|YP_003400597.1| - 0.06 13.6 0.3 0.06 13.6 0.2 2.4 2 1 0 2 2 2 0 Cdc37 N terminal kinase binding DUF3287 PF11690.3 gi|284161974|ref|YP_003400597.1| - 0.064 13.3 0.6 0.57 10.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) LIN37 PF15306.1 gi|284161974|ref|YP_003400597.1| - 0.064 13.2 5.2 3.2 7.7 1.8 2.3 2 0 0 2 2 2 0 LIN37 EMP24_GP25L PF01105.19 gi|284161974|ref|YP_003400597.1| - 0.071 12.8 2.7 0.55 9.9 0.1 2.5 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD IncA PF04156.9 gi|284161974|ref|YP_003400597.1| - 0.089 12.3 18.8 4.5 6.8 13.0 2.7 1 1 0 1 1 1 0 IncA protein Snapin_Pallidin PF14712.1 gi|284161974|ref|YP_003400597.1| - 0.09 13.0 8.6 0.31 11.3 1.8 3.1 3 0 0 3 3 2 0 Snapin/Pallidin YebO PF13974.1 gi|284161974|ref|YP_003400597.1| - 0.099 12.4 2.1 0.3 10.8 1.5 1.9 1 0 0 1 1 1 0 YebO-like protein Leu_zip PF15294.1 gi|284161974|ref|YP_003400597.1| - 0.099 11.7 10.1 0.018 14.1 3.1 2.2 2 0 0 2 2 2 0 Leucine zipper PspA_IM30 PF04012.7 gi|284161974|ref|YP_003400597.1| - 0.1 11.9 8.6 0.98 8.7 3.6 2.4 2 0 0 2 2 2 0 PspA/IM30 family DUF342 PF03961.8 gi|284161974|ref|YP_003400597.1| - 0.1 10.9 5.3 0.13 10.6 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF342) Laminin_II PF06009.7 gi|284161974|ref|YP_003400597.1| - 0.11 12.3 4.7 2.8 7.6 1.2 2.5 2 0 0 2 2 2 0 Laminin Domain II LRS4 PF10422.4 gi|284161974|ref|YP_003400597.1| - 0.12 11.7 2.9 0.2 10.9 2.0 1.3 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 TcdA_TcdB PF12919.2 gi|284161974|ref|YP_003400597.1| - 0.13 10.7 5.1 0.086 11.3 0.3 2.1 2 0 0 2 2 2 0 TcdA/TcdB catalytic glycosyltransferase domain DUF2968 PF11180.3 gi|284161974|ref|YP_003400597.1| - 0.14 11.5 2.3 0.25 10.7 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) TBCA PF02970.11 gi|284161974|ref|YP_003400597.1| - 0.15 12.1 15.0 0.25 11.4 3.3 2.9 3 0 0 3 3 3 0 Tubulin binding cofactor A DUF1743 PF08489.6 gi|284161974|ref|YP_003400597.1| - 0.21 11.3 2.0 0.55 9.9 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1743) Spc24 PF08286.6 gi|284161974|ref|YP_003400597.1| - 0.27 10.9 12.1 0.49 10.1 2.7 3.0 2 1 1 3 3 3 0 Spc24 subunit of Ndc80 Lamp PF01299.12 gi|284161974|ref|YP_003400597.1| - 0.27 10.3 6.4 0.41 9.7 4.4 1.2 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) Syntaxin_2 PF14523.1 gi|284161974|ref|YP_003400597.1| - 0.28 11.2 6.5 1.8 8.6 1.8 2.6 2 0 0 2 2 2 0 Syntaxin-like protein NTR2 PF15458.1 gi|284161974|ref|YP_003400597.1| - 0.32 10.1 9.3 0.076 12.2 3.5 2.0 2 0 0 2 2 2 0 Nineteen complex-related protein 2 DUF2205 PF10224.4 gi|284161974|ref|YP_003400597.1| - 0.43 10.1 10.5 0.12 11.9 3.5 2.6 2 1 1 3 3 2 0 Predicted coiled-coil protein (DUF2205) DUF4456 PF14644.1 gi|284161974|ref|YP_003400597.1| - 0.44 9.7 7.2 0.12 11.5 0.3 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4456) BLOC1_2 PF10046.4 gi|284161974|ref|YP_003400597.1| - 0.46 10.6 8.4 0.29 11.3 2.0 2.5 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.17 gi|284161974|ref|YP_003400597.1| - 0.46 10.5 15.3 0.2 11.7 2.3 2.7 3 0 0 3 3 2 0 Seryl-tRNA synthetase N-terminal domain SlyX PF04102.7 gi|284161974|ref|YP_003400597.1| - 0.56 10.6 8.6 5.9 7.3 4.0 2.9 2 1 0 2 2 2 0 SlyX DUF3436 PF11918.3 gi|284161974|ref|YP_003400597.1| - 0.61 10.3 4.0 2 8.7 2.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3436) GAS PF13851.1 gi|284161974|ref|YP_003400597.1| - 0.66 9.1 21.7 0.37 9.9 9.1 2.8 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding ATG16 PF08614.6 gi|284161974|ref|YP_003400597.1| - 0.83 9.4 12.7 0.12 12.1 4.7 2.2 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF3186 PF11382.3 gi|284161974|ref|YP_003400597.1| - 0.89 8.6 4.5 0.42 9.7 1.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3186) TBPIP PF07106.8 gi|284161974|ref|YP_003400597.1| - 0.93 9.0 13.9 0.03 13.8 2.2 2.7 3 0 0 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Mod_r PF07200.8 gi|284161974|ref|YP_003400597.1| - 1.3 8.9 11.4 0.22 11.4 3.6 2.3 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Laminin_I PF06008.9 gi|284161974|ref|YP_003400597.1| - 1.3 8.2 11.9 1.1 8.4 1.7 2.5 3 0 0 3 3 2 0 Laminin Domain I DUF948 PF06103.6 gi|284161974|ref|YP_003400597.1| - 1.6 8.6 8.6 0.86 9.5 0.6 3.1 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) FlxA PF14282.1 gi|284161974|ref|YP_003400597.1| - 1.8 8.5 8.0 26 4.8 3.8 3.0 2 1 0 2 2 2 0 FlxA-like protein Fib_alpha PF08702.5 gi|284161974|ref|YP_003400597.1| - 1.9 8.6 6.2 1.1 9.3 0.7 2.5 3 0 0 3 3 2 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|284161974|ref|YP_003400597.1| - 2.2 8.1 9.5 0.49 10.2 1.5 2.5 3 0 0 3 3 2 0 Protein of unknown function (DUF1664) Sipho_Gp157 PF05565.6 gi|284161974|ref|YP_003400597.1| - 2.2 7.8 14.7 1.6 8.3 0.5 2.7 3 0 0 3 3 2 0 Siphovirus Gp157 DUF2681 PF10883.3 gi|284161974|ref|YP_003400597.1| - 2.4 8.4 6.8 26 5.0 2.2 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) P4Ha_N PF08336.6 gi|284161974|ref|YP_003400597.1| - 2.4 7.9 11.0 0.38 10.5 1.4 2.5 3 0 0 3 3 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF677 PF05055.7 gi|284161974|ref|YP_003400597.1| - 2.5 6.6 9.1 0.64 8.6 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF677) DUF4164 PF13747.1 gi|284161974|ref|YP_003400597.1| - 2.6 8.2 15.8 0.046 13.8 4.8 2.4 3 0 0 3 3 2 0 Domain of unknown function (DUF4164) DUF2730 PF10805.3 gi|284161974|ref|YP_003400597.1| - 3 7.6 7.3 42 3.9 0.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) bZIP_2 PF07716.10 gi|284161974|ref|YP_003400597.1| - 3.1 7.7 19.5 0.066 13.0 3.3 3.5 2 1 2 4 4 4 0 Basic region leucine zipper Cep57_CLD_2 PF14197.1 gi|284161974|ref|YP_003400597.1| - 3.2 7.7 15.5 0.61 10.0 6.4 2.7 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 Fzo_mitofusin PF04799.8 gi|284161974|ref|YP_003400597.1| - 3.4 7.0 6.0 0.88 8.9 1.1 2.0 2 0 0 2 2 2 0 fzo-like conserved region Lumazine_bd PF12870.2 gi|284161974|ref|YP_003400597.1| - 3.8 7.5 6.3 0.68 10.0 0.2 2.4 3 0 0 3 3 2 0 Lumazine-binding domain Z1 PF10593.4 gi|284161974|ref|YP_003400597.1| - 4.7 6.3 7.4 0.49 9.5 1.1 2.0 3 0 0 3 3 2 0 Z1 domain ACCA PF03255.9 gi|284161974|ref|YP_003400597.1| - 4.7 6.7 6.7 1.1 8.8 1.3 2.2 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1640 PF07798.6 gi|284161974|ref|YP_003400597.1| - 5.4 7.0 9.1 0.63 10.0 1.2 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1640) Phage_GP20 PF06810.6 gi|284161974|ref|YP_003400597.1| - 5.9 6.3 16.5 0.096 12.1 3.3 2.9 3 0 0 3 3 3 0 Phage minor structural protein GP20 GP41 PF00517.12 gi|284161974|ref|YP_003400597.1| - 7.1 6.1 10.6 0.43 10.0 2.2 2.3 2 1 0 2 2 1 0 Retroviral envelope protein DUF3450 PF11932.3 gi|284161974|ref|YP_003400597.1| - 8.2 5.6 9.5 4.9 6.3 4.6 2.1 2 1 0 2 2 1 0 Protein of unknown function (DUF3450) Med9 PF07544.8 gi|284161974|ref|YP_003400597.1| - 9 6.1 15.9 0.049 13.3 2.1 3.0 3 0 0 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 TusA PF01206.12 gi|284161975|ref|YP_003400598.1| - 0.0081 15.7 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA Hjc PF01870.13 gi|284161975|ref|YP_003400598.1| - 0.073 12.6 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) DUF3139 PF11337.3 gi|284161976|ref|YP_003400599.1| - 0.032 14.4 0.7 3.8 7.8 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) IRS PF02174.12 gi|284161976|ref|YP_003400599.1| - 0.074 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 PTB domain (IRS-1 type) DUF4635 PF15466.1 gi|284161976|ref|YP_003400599.1| - 0.2 10.9 1.2 0.65 9.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4635) Gp49 PF05973.9 gi|284161977|ref|YP_003400600.1| - 3.7e-05 23.6 0.1 4.4e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) Plasmid_stabil PF05016.9 gi|284161977|ref|YP_003400600.1| - 0.0011 19.2 0.1 0.0015 18.8 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein SPOR PF05036.8 gi|284161977|ref|YP_003400600.1| - 0.12 12.4 0.0 0.24 11.5 0.0 1.6 1 1 0 1 1 1 0 Sporulation related domain DUF217 PF02697.9 gi|284161978|ref|YP_003400601.1| - 7.1e-05 22.9 3.5 0.0001 22.4 2.4 1.3 1 1 0 1 1 1 1 Uncharacterized ACR, COG1753 Rab5-bind PF09311.6 gi|284161978|ref|YP_003400601.1| - 0.00014 21.8 0.2 0.00016 21.6 0.1 1.0 1 0 0 1 1 1 1 Rabaptin-like protein RHH_1 PF01402.16 gi|284161978|ref|YP_003400601.1| - 0.0024 17.6 2.1 0.005 16.6 0.5 2.2 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family TMF_DNA_bd PF12329.3 gi|284161978|ref|YP_003400601.1| - 0.015 15.0 1.3 0.02 14.6 0.9 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF4298 PF14131.1 gi|284161978|ref|YP_003400601.1| - 0.023 14.5 0.4 0.029 14.2 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) IFT57 PF10498.4 gi|284161978|ref|YP_003400601.1| - 0.025 13.3 0.9 0.029 13.1 0.6 1.0 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 phiKZ_IP PF12699.2 gi|284161978|ref|YP_003400601.1| - 0.027 13.3 0.8 0.028 13.3 0.6 1.0 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins Rootletin PF15035.1 gi|284161978|ref|YP_003400601.1| - 0.029 14.3 1.1 0.031 14.2 0.8 1.0 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion TPR_MLP1_2 PF07926.7 gi|284161978|ref|YP_003400601.1| - 0.072 12.8 0.3 0.078 12.7 0.2 1.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein TBCA PF02970.11 gi|284161978|ref|YP_003400601.1| - 0.094 12.7 0.7 0.14 12.2 0.5 1.4 1 0 0 1 1 1 0 Tubulin binding cofactor A TnpW PF14202.1 gi|284161978|ref|YP_003400601.1| - 0.11 12.0 0.1 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 Transposon-encoded protein TnpW IncA PF04156.9 gi|284161978|ref|YP_003400601.1| - 0.14 11.7 1.2 0.16 11.5 0.8 1.0 1 0 0 1 1 1 0 IncA protein RHH_3 PF12651.2 gi|284161978|ref|YP_003400601.1| - 0.15 11.7 1.0 0.69 9.6 0.0 2.4 2 1 0 2 2 2 0 Ribbon-helix-helix domain DUF2312 PF10073.4 gi|284161978|ref|YP_003400601.1| - 0.21 10.9 6.3 0.53 9.6 1.4 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) DUF3461 PF11944.3 gi|284161978|ref|YP_003400601.1| - 0.27 11.0 2.8 0.31 10.8 1.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3461) RBD-FIP PF09457.5 gi|284161978|ref|YP_003400601.1| - 1.8 8.3 8.6 4 7.3 3.6 2.5 1 1 1 2 2 2 0 FIP domain DUF460 PF04312.8 gi|284161979|ref|YP_003400602.1| - 5.2e-47 158.8 0.0 1.4e-46 157.4 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF460) HAUS5 PF14817.1 gi|284161979|ref|YP_003400602.1| - 0.00072 18.2 5.7 0.0011 17.6 4.0 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 5 PA PF02225.17 gi|284161979|ref|YP_003400602.1| - 0.013 15.1 0.1 0.063 12.9 0.0 2.2 2 0 0 2 2 2 0 PA domain Syntaxin_2 PF14523.1 gi|284161979|ref|YP_003400602.1| - 0.04 13.9 7.7 0.21 11.6 5.3 2.3 1 0 0 1 1 1 0 Syntaxin-like protein DivIC PF04977.10 gi|284161979|ref|YP_003400602.1| - 0.048 13.1 17.6 0.14 11.6 1.4 3.6 3 1 0 3 3 3 0 Septum formation initiator DUF429 PF04250.8 gi|284161979|ref|YP_003400602.1| - 0.12 11.6 1.0 4 6.6 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF429) LXG PF04740.7 gi|284161979|ref|YP_003400602.1| - 0.18 11.6 8.8 1.7 8.3 0.1 3.0 2 1 0 2 2 2 0 LXG domain of WXG superfamily ATG16 PF08614.6 gi|284161979|ref|YP_003400602.1| - 0.21 11.3 16.3 0.57 9.9 11.3 1.7 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Atg14 PF10186.4 gi|284161979|ref|YP_003400602.1| - 0.27 10.1 17.6 0.074 11.9 9.9 1.7 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|284161979|ref|YP_003400602.1| - 2 7.9 20.4 7.2 6.1 14.1 1.9 1 1 0 1 1 1 0 IncA protein TMF_DNA_bd PF12329.3 gi|284161979|ref|YP_003400602.1| - 4 7.3 34.8 0.13 12.1 5.2 4.0 3 1 1 4 4 4 0 TATA element modulatory factor 1 DNA binding AKNA PF12443.3 gi|284161979|ref|YP_003400602.1| - 5.1 7.1 10.2 5.9 6.9 0.7 2.8 1 1 1 2 2 2 0 AT-hook-containing transcription factor Exosortase_EpsH PF09721.5 gi|284161980|ref|YP_003400603.1| - 2.2e-38 131.9 16.8 2.7e-38 131.6 11.7 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PS_Dcarbxylase PF02666.10 gi|284161981|ref|YP_003400604.1| - 1e-27 96.7 2.8 1.8e-24 86.1 0.6 2.0 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase Biotin_lipoyl PF00364.17 gi|284161981|ref|YP_003400604.1| - 2.2e-05 23.9 2.1 0.99 9.0 0.1 3.8 3 1 1 4 4 4 3 Biotin-requiring enzyme Peptidase_M23 PF01551.17 gi|284161981|ref|YP_003400604.1| - 0.00014 21.7 1.0 0.11 12.6 0.0 3.1 1 1 2 3 3 3 1 Peptidase family M23 Biotin_lipoyl_2 PF13533.1 gi|284161981|ref|YP_003400604.1| - 0.0006 19.4 0.8 2.1 8.0 0.0 3.3 3 0 0 3 3 3 2 Biotin-lipoyl like PYNP_C PF07831.8 gi|284161981|ref|YP_003400604.1| - 0.00069 19.0 0.4 0.076 12.4 0.0 2.3 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain RnfC_N PF13375.1 gi|284161981|ref|YP_003400604.1| - 0.005 16.5 0.6 1.5 8.5 0.0 2.8 1 1 2 3 3 3 2 RnfC Barrel sandwich hybrid domain Apocytochr_F_C PF01333.14 gi|284161981|ref|YP_003400604.1| - 0.035 13.9 0.0 6.3 6.6 0.0 2.3 1 1 1 2 2 2 0 Apocytochrome F, C-terminal DUF2118 PF09891.4 gi|284161981|ref|YP_003400604.1| - 0.048 13.3 2.2 1.2 8.8 0.1 2.7 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2118) CDP-OH_P_transf PF01066.16 gi|284161982|ref|YP_003400605.1| - 8.5e-11 42.0 16.8 7.3e-10 39.0 9.8 2.7 1 1 1 2 2 2 1 CDP-alcohol phosphatidyltransferase Fig1 PF12351.3 gi|284161982|ref|YP_003400605.1| - 5 6.9 9.2 9 6.1 0.1 2.4 1 1 1 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 DUF381 PF04038.7 gi|284161983|ref|YP_003400606.1| - 9.9e-18 63.9 1.0 1.3e-17 63.5 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|284161983|ref|YP_003400606.1| - 4.1e-17 61.3 0.0 5.6e-17 60.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF372) MRP-S26 PF14943.1 gi|284161984|ref|YP_003400607.1| - 0.00055 19.5 0.2 0.0006 19.4 0.1 1.1 1 0 0 1 1 1 1 Mitochondrial ribosome subunit S26 SurE PF01975.12 gi|284161985|ref|YP_003400608.1| - 1.4e-56 190.9 0.0 1.7e-56 190.6 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Rib_5-P_isom_A PF06026.9 gi|284161986|ref|YP_003400609.1| - 3.2e-64 215.3 0.0 4e-64 215.0 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|284161986|ref|YP_003400609.1| - 3.6e-07 29.9 0.2 1e-05 25.2 0.1 2.1 1 1 0 1 1 1 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|284161986|ref|YP_003400609.1| - 0.053 12.4 0.0 0.08 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain PALP PF00291.20 gi|284161986|ref|YP_003400609.1| - 0.096 11.9 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Rubredoxin PF00301.15 gi|284161987|ref|YP_003400610.1| - 6.2e-06 25.9 9.9 6e-05 22.8 6.8 2.1 1 1 0 1 1 1 1 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|284161987|ref|YP_003400610.1| - 0.0042 16.8 3.3 0.2 11.4 0.3 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|284161987|ref|YP_003400610.1| - 0.0067 16.6 3.7 1.4 9.3 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double domain RRN7 PF11781.3 gi|284161987|ref|YP_003400610.1| - 0.011 15.2 1.3 0.12 11.8 0.1 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 RecR PF02132.10 gi|284161987|ref|YP_003400610.1| - 0.02 14.3 2.7 0.057 12.8 1.9 1.7 1 1 0 1 1 1 0 RecR protein Zn-ribbon_8 PF09723.5 gi|284161987|ref|YP_003400610.1| - 0.026 14.4 5.0 0.15 12.0 3.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|284161987|ref|YP_003400610.1| - 0.028 13.7 7.1 0.26 10.6 4.9 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-nanos PF05741.8 gi|284161987|ref|YP_003400610.1| - 0.03 14.2 2.0 0.27 11.2 0.0 2.1 1 1 1 2 2 2 0 Nanos RNA binding domain zf-C2H2 PF00096.21 gi|284161987|ref|YP_003400610.1| - 0.038 14.3 4.5 2 8.9 0.3 2.3 2 1 0 2 2 2 0 Zinc finger, C2H2 type Desulfoferrod_N PF06397.7 gi|284161987|ref|YP_003400610.1| - 0.061 12.7 5.6 0.68 9.3 0.8 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain TFIIS_C PF01096.13 gi|284161987|ref|YP_003400610.1| - 0.13 11.9 2.2 9 6.0 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.6 gi|284161987|ref|YP_003400610.1| - 0.14 11.7 0.9 3.8 7.0 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2HC5 PF06221.8 gi|284161987|ref|YP_003400610.1| - 0.16 11.7 1.3 0.18 11.5 0.9 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-AN1 PF01428.11 gi|284161987|ref|YP_003400610.1| - 0.19 11.6 2.7 2.5 8.0 0.2 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-H2C2_5 PF13909.1 gi|284161987|ref|YP_003400610.1| - 0.23 11.7 2.3 0.3 11.4 0.1 2.2 2 1 0 2 2 2 0 C2H2-type zinc-finger domain OrfB_Zn_ribbon PF07282.6 gi|284161987|ref|YP_003400610.1| - 0.28 10.8 1.8 0.47 10.1 1.2 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_4 PF13894.1 gi|284161987|ref|YP_003400610.1| - 0.37 11.2 4.3 11 6.6 0.5 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger A2L_zn_ribbon PF08792.5 gi|284161987|ref|YP_003400610.1| - 0.41 10.1 5.5 3.1 7.3 0.3 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|284161987|ref|YP_003400610.1| - 0.42 9.8 5.7 1.3 8.3 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|284161987|ref|YP_003400610.1| - 0.42 10.5 2.1 11 6.1 0.3 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Di19 PF05605.7 gi|284161987|ref|YP_003400610.1| - 0.6 10.2 3.4 2.1 8.5 2.3 1.9 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-RING_5 PF14634.1 gi|284161987|ref|YP_003400610.1| - 0.7 9.6 4.5 31 4.3 3.1 2.1 1 1 0 1 1 1 0 zinc-RING finger domain Cys_rich_CPCC PF14206.1 gi|284161987|ref|YP_003400610.1| - 0.76 9.3 5.9 4.7 6.8 4.4 1.8 1 1 1 2 2 2 0 Cysteine-rich CPCC zf-Sec23_Sec24 PF04810.10 gi|284161987|ref|YP_003400610.1| - 0.98 9.0 3.7 2.5 7.7 0.9 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-C2HC_2 PF13913.1 gi|284161987|ref|YP_003400610.1| - 1.1 8.9 4.2 8.2 6.2 0.2 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type RNA_POL_M_15KD PF02150.11 gi|284161987|ref|YP_003400610.1| - 1.7 8.4 5.7 2.5 7.8 0.2 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-Mss51 PF13824.1 gi|284161987|ref|YP_003400610.1| - 2.3 8.1 4.8 6.6 6.6 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 ADK_lid PF05191.9 gi|284161987|ref|YP_003400610.1| - 2.5 7.8 5.3 16 5.2 3.7 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-HIT PF04438.11 gi|284161987|ref|YP_003400610.1| - 3.3 7.4 5.2 13 5.4 0.5 2.2 2 0 0 2 2 2 0 HIT zinc finger DUF1610 PF07754.6 gi|284161987|ref|YP_003400610.1| - 4 7.6 8.4 1.3 9.2 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Auto_anti-p27 PF06677.7 gi|284161987|ref|YP_003400610.1| - 4.6 7.0 6.8 88 2.9 4.8 2.2 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_2 PF13639.1 gi|284161987|ref|YP_003400610.1| - 9.1 6.2 6.6 19 5.2 0.5 2.1 1 1 0 2 2 2 0 Ring finger domain Methyltransf_11 PF08241.7 gi|284161988|ref|YP_003400611.1| - 1.1e-21 77.1 0.0 1.5e-21 76.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|284161988|ref|YP_003400611.1| - 2.6e-17 62.7 0.0 5.3e-15 55.1 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|284161988|ref|YP_003400611.1| - 3.9e-16 59.0 0.0 4.7e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284161988|ref|YP_003400611.1| - 9e-16 58.0 0.0 1.4e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284161988|ref|YP_003400611.1| - 1.9e-11 43.9 0.0 2.7e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284161988|ref|YP_003400611.1| - 3.5e-11 43.4 0.0 5.1e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284161988|ref|YP_003400611.1| - 4.3e-10 40.1 0.0 6.6e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284161988|ref|YP_003400611.1| - 2.7e-09 37.0 0.0 1.8e-08 34.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|284161988|ref|YP_003400611.1| - 3.1e-06 26.8 0.1 7e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|284161988|ref|YP_003400611.1| - 2.7e-05 23.3 0.0 3.7e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|284161988|ref|YP_003400611.1| - 2.9e-05 22.9 0.0 0.00011 21.0 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) CMAS PF02353.15 gi|284161988|ref|YP_003400611.1| - 3.2e-05 23.1 0.0 5.3e-05 22.4 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|284161988|ref|YP_003400611.1| - 0.0025 16.8 0.0 0.0042 16.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_29 PF03141.11 gi|284161988|ref|YP_003400611.1| - 0.028 12.7 0.0 0.036 12.4 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|284161988|ref|YP_003400611.1| - 0.031 13.6 0.0 0.057 12.8 0.0 1.4 2 0 0 2 2 2 0 Methyltransferase small domain TPP_enzyme_M PF00205.17 gi|284161988|ref|YP_003400611.1| - 0.054 13.2 0.0 0.084 12.6 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain MetW PF07021.7 gi|284161988|ref|YP_003400611.1| - 0.058 12.7 0.0 0.09 12.1 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Ribosomal_S6e PF01092.14 gi|284161989|ref|YP_003400612.1| - 5.1e-34 116.6 0.7 5.7e-34 116.4 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e Shikimate_dh_N PF08501.6 gi|284161990|ref|YP_003400613.1| - 3.7e-29 100.6 0.0 7.3e-29 99.6 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|284161990|ref|YP_003400613.1| - 4e-14 52.8 0.0 6.5e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|284161990|ref|YP_003400613.1| - 0.0049 16.3 0.0 0.0089 15.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ADH_zinc_N PF00107.21 gi|284161990|ref|YP_003400613.1| - 0.022 14.3 0.1 19 4.8 0.0 3.2 2 1 0 3 3 3 0 Zinc-binding dehydrogenase THF_DHG_CYH_C PF02882.14 gi|284161990|ref|YP_003400613.1| - 0.037 13.1 0.0 0.27 10.3 0.0 2.0 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.14 gi|284161990|ref|YP_003400613.1| - 0.053 12.6 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|284161990|ref|YP_003400613.1| - 0.056 13.7 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|284161990|ref|YP_003400613.1| - 0.1 11.5 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase TrmB PF01978.14 gi|284161991|ref|YP_003400614.1| - 4e-06 26.4 0.9 6.4e-06 25.7 0.4 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|284161991|ref|YP_003400614.1| - 5.4e-05 22.6 6.9 6.5e-05 22.3 4.8 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|284161991|ref|YP_003400614.1| - 0.00013 21.5 0.1 0.00037 20.1 0.0 1.8 1 1 1 2 2 2 1 MarR family HTH_27 PF13463.1 gi|284161991|ref|YP_003400614.1| - 0.00026 21.2 0.3 0.00069 19.8 0.1 1.9 1 1 2 3 3 3 1 Winged helix DNA-binding domain PadR PF03551.9 gi|284161991|ref|YP_003400614.1| - 0.0019 17.9 0.1 0.0033 17.1 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|284161991|ref|YP_003400614.1| - 0.0063 16.5 0.1 0.012 15.6 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF387 PF04079.11 gi|284161991|ref|YP_003400614.1| - 0.0076 15.6 1.1 0.011 15.1 0.3 1.7 1 1 1 2 2 2 1 Putative transcriptional regulators (Ypuh-like) DUF2250 PF10007.4 gi|284161991|ref|YP_003400614.1| - 0.019 14.8 3.8 0.037 13.9 0.1 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.2 gi|284161991|ref|YP_003400614.1| - 0.022 14.5 0.3 0.089 12.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1018 PF06252.7 gi|284161991|ref|YP_003400614.1| - 0.029 14.8 1.8 0.048 14.1 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1018) HTH_24 PF13412.1 gi|284161991|ref|YP_003400614.1| - 0.029 13.7 4.8 0.036 13.4 0.1 2.9 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284161991|ref|YP_003400614.1| - 0.032 13.9 0.2 0.082 12.6 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.15 gi|284161991|ref|YP_003400614.1| - 0.07 12.8 0.3 0.27 10.9 0.0 2.1 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Syntaxin_2 PF14523.1 gi|284161991|ref|YP_003400614.1| - 0.36 10.8 3.7 7.5 6.6 0.6 2.1 1 1 1 2 2 2 0 Syntaxin-like protein Nup88 PF10168.4 gi|284161991|ref|YP_003400614.1| - 0.47 8.2 6.4 0.5 8.1 4.4 1.0 1 0 0 1 1 1 0 Nuclear pore component Siah-Interact_N PF09032.6 gi|284161991|ref|YP_003400614.1| - 6.7 6.8 9.2 34 4.5 3.8 2.8 2 2 0 2 2 2 0 Siah interacting protein, N terminal TMF_DNA_bd PF12329.3 gi|284161991|ref|YP_003400614.1| - 7.9 6.3 15.0 2.3 8.0 0.2 3.0 3 1 0 3 3 3 0 TATA element modulatory factor 1 DNA binding Mtp PF03821.11 gi|284161992|ref|YP_003400615.1| - 0.0037 16.6 0.4 0.0039 16.6 0.3 1.0 1 0 0 1 1 1 1 Golgi 4-transmembrane spanning transporter SecE PF00584.15 gi|284161992|ref|YP_003400615.1| - 0.011 15.3 0.5 0.015 14.8 0.3 1.3 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex FixQ PF05545.6 gi|284161992|ref|YP_003400615.1| - 0.034 13.7 0.1 0.044 13.4 0.1 1.2 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ DUF21 PF01595.15 gi|284161992|ref|YP_003400615.1| - 0.071 12.3 0.1 0.079 12.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF21 Spt5-NGN PF03439.8 gi|284161993|ref|YP_003400616.1| - 8.4e-24 83.1 0.1 1.5e-23 82.3 0.1 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|284161993|ref|YP_003400616.1| - 2.1e-07 30.4 1.1 7.5e-07 28.6 0.1 2.2 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|284161993|ref|YP_003400616.1| - 0.00014 22.0 0.3 0.0009 19.4 0.0 2.3 1 1 0 2 2 2 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.9 gi|284161994|ref|YP_003400617.1| - 6.9e-28 95.8 1.2 1.3e-27 95.0 0.8 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|284161994|ref|YP_003400617.1| - 6.1e-26 90.3 2.9 1.1e-25 89.5 2.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain DUF3359 PF11839.3 gi|284161995|ref|YP_003400618.1| - 0.038 14.3 0.0 0.041 14.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) PilJ PF13675.1 gi|284161996|ref|YP_003400619.1| - 0.0034 17.6 0.5 0.025 14.9 0.1 2.3 2 1 1 3 3 3 1 Type IV pili methyl-accepting chemotaxis transducer N-term Gp5_C PF06715.7 gi|284161996|ref|YP_003400619.1| - 0.012 15.4 1.7 0.012 15.4 1.2 5.5 5 2 1 6 6 6 0 Gp5 C-terminal repeat (3 copies) Nop25 PF09805.4 gi|284161996|ref|YP_003400619.1| - 0.029 14.4 9.0 0.07 13.1 6.2 1.6 1 0 0 1 1 1 0 Nucleolar protein 12 (25kDa) DUF4477 PF14780.1 gi|284161996|ref|YP_003400619.1| - 0.059 12.7 0.1 0.14 11.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4477) HSCB_C PF07743.8 gi|284161996|ref|YP_003400619.1| - 0.29 11.6 8.5 2.8 8.4 0.6 3.3 3 0 0 3 3 3 0 HSCB C-terminal oligomerisation domain Spectrin PF00435.16 gi|284161996|ref|YP_003400619.1| - 0.5 10.6 10.9 17 5.7 2.5 3.3 3 0 0 3 3 3 0 Spectrin repeat Syntaxin_2 PF14523.1 gi|284161996|ref|YP_003400619.1| - 0.51 10.3 5.9 1 9.3 0.1 2.4 2 0 0 2 2 2 0 Syntaxin-like protein Syntaxin-6_N PF09177.6 gi|284161996|ref|YP_003400619.1| - 1.7 9.1 8.3 6 7.3 0.1 3.3 3 0 0 3 3 3 0 Syntaxin 6, N-terminal TBPIP PF07106.8 gi|284161996|ref|YP_003400619.1| - 2.8 7.4 17.6 0.11 12.0 0.8 2.7 3 0 0 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_24 PF13412.1 gi|284161997|ref|YP_003400620.1| - 4.5e-07 29.1 0.9 2.6e-06 26.7 0.2 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284161997|ref|YP_003400620.1| - 4.8e-05 22.9 0.1 7.5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284161997|ref|YP_003400620.1| - 6.2e-05 22.5 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|284161997|ref|YP_003400620.1| - 7.2e-05 22.7 0.0 0.00016 21.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain EAP30 PF04157.11 gi|284161997|ref|YP_003400620.1| - 0.00031 19.9 0.1 0.00044 19.4 0.1 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_IclR PF09339.5 gi|284161997|ref|YP_003400620.1| - 0.00088 18.8 0.2 0.0017 17.9 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|284161997|ref|YP_003400620.1| - 0.0023 18.2 0.7 0.008 16.4 0.1 2.1 2 1 1 3 3 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|284161997|ref|YP_003400620.1| - 0.0052 16.4 0.1 0.0052 16.4 0.1 2.8 3 1 1 4 4 4 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284161997|ref|YP_003400620.1| - 0.0091 15.7 0.3 0.015 15.1 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Mrr_N PF14338.1 gi|284161997|ref|YP_003400620.1| - 0.014 15.4 0.4 1.8 8.7 0.0 2.5 1 1 1 2 2 2 0 Mrr N-terminal domain FeoC PF09012.5 gi|284161997|ref|YP_003400620.1| - 0.029 14.0 0.2 0.1 12.2 0.1 1.9 1 1 1 2 2 2 0 FeoC like transcriptional regulator Penicillinase_R PF03965.11 gi|284161997|ref|YP_003400620.1| - 0.078 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor CarboxypepD_reg PF13620.1 gi|284161997|ref|YP_003400620.1| - 0.096 12.7 0.1 0.2 11.7 0.1 1.6 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain DUF2570 PF10828.3 gi|284161997|ref|YP_003400620.1| - 0.13 11.8 0.0 7.5 6.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) HD PF01966.17 gi|284161998|ref|YP_003400621.1| - 7.2e-10 38.9 2.2 8.4e-10 38.7 0.5 2.0 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|284161998|ref|YP_003400621.1| - 0.0034 16.7 0.0 0.0062 15.8 0.0 1.3 1 0 0 1 1 1 1 HDOD domain TPK_catalytic PF04263.11 gi|284161998|ref|YP_003400621.1| - 0.095 12.2 0.0 9.2 5.8 0.0 2.7 2 1 0 2 2 2 0 Thiamin pyrophosphokinase, catalytic domain Lactamase_B_2 PF12706.2 gi|284161999|ref|YP_003400622.1| - 2.1e-12 46.9 0.1 2.7e-12 46.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284161999|ref|YP_003400622.1| - 1.9e-08 34.1 0.0 3e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284161999|ref|YP_003400622.1| - 1e-06 28.5 0.2 5.6e-06 26.1 0.1 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF3479 PF11965.3 gi|284161999|ref|YP_003400622.1| - 0.018 14.8 0.1 0.16 11.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3479) DHH PF01368.15 gi|284161999|ref|YP_003400622.1| - 0.031 13.9 0.6 0.64 9.6 0.0 2.3 2 0 0 2 2 2 0 DHH family AP_endonuc_2 PF01261.19 gi|284161999|ref|YP_003400622.1| - 0.063 12.5 0.2 0.78 8.9 0.0 2.4 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel Transpep_BrtH PF14399.1 gi|284161999|ref|YP_003400622.1| - 0.063 12.5 0.0 4.8 6.3 0.0 2.2 2 0 0 2 2 2 0 NlpC/p60-like transpeptidase Thymidylate_kin PF02223.12 gi|284161999|ref|YP_003400622.1| - 0.064 12.6 0.0 0.89 8.9 0.1 2.2 2 0 0 2 2 2 0 Thymidylate kinase Ribosomal_L10 PF00466.15 gi|284161999|ref|YP_003400622.1| - 0.13 12.2 0.6 0.46 10.4 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein L10 DUF2325 PF10087.4 gi|284161999|ref|YP_003400622.1| - 0.13 12.0 0.1 3.6 7.4 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) KH_3 PF13014.1 gi|284161999|ref|YP_003400622.1| - 0.13 11.8 0.0 1 9.1 0.0 2.4 3 0 0 3 3 3 0 KH domain Nuc-transf PF10127.4 gi|284162001|ref|YP_003400624.1| - 0.055 12.8 0.0 0.06 12.6 0.0 1.0 1 0 0 1 1 1 0 Predicted nucleotidyltransferase P53_tetramer PF07710.6 gi|284162001|ref|YP_003400624.1| - 0.064 12.3 0.1 0.094 11.8 0.1 1.3 1 0 0 1 1 1 0 P53 tetramerisation motif Pup PF05639.6 gi|284162001|ref|YP_003400624.1| - 0.12 12.8 0.0 0.14 12.7 0.0 1.1 1 0 0 1 1 1 0 Pup-like protein EI24 PF07264.6 gi|284162002|ref|YP_003400625.1| - 0.044 13.2 6.7 0.067 12.6 4.6 1.3 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) BPD_transp_1 PF00528.17 gi|284162002|ref|YP_003400625.1| - 0.16 11.4 9.5 0.028 13.9 3.3 1.8 2 0 0 2 2 2 0 Binding-protein-dependent transport system inner membrane component Laminin_G_3 PF13385.1 gi|284162003|ref|YP_003400626.1| - 3.6e-36 124.7 4.2 1.4e-34 119.6 0.0 2.7 2 0 0 2 2 2 2 Concanavalin A-like lectin/glucanases superfamily Sialidase PF02973.11 gi|284162003|ref|YP_003400626.1| - 3.1e-05 23.0 0.0 0.031 13.2 0.0 2.8 2 0 0 2 2 2 2 Sialidase, N-terminal domain CHU_C PF13585.1 gi|284162003|ref|YP_003400626.1| - 0.03 14.1 0.6 0.03 14.1 0.4 3.8 4 0 0 4 4 4 0 C-terminal domain of CHU protein family DBB PF14545.1 gi|284162003|ref|YP_003400626.1| - 0.13 11.7 0.1 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Dof, BCAP, and BANK (DBB) motif, DUF4383 PF14325.1 gi|284162003|ref|YP_003400626.1| - 1.8 8.5 6.3 2 8.4 2.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4383) MFS_1 PF07690.11 gi|284162003|ref|YP_003400626.1| - 2.4 6.7 10.3 0.096 11.3 3.1 1.5 2 0 0 2 2 2 0 Major Facilitator Superfamily DUF2189 PF09955.4 gi|284162004|ref|YP_003400627.1| - 0.0056 16.6 1.4 0.0064 16.4 1.0 1.1 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2189) DUF202 PF02656.10 gi|284162004|ref|YP_003400627.1| - 0.27 11.4 3.7 1 9.6 1.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF202) AAA_10 PF12846.2 gi|284162006|ref|YP_003400629.1| - 8.7e-07 28.6 0.5 0.023 14.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_19 PF13245.1 gi|284162006|ref|YP_003400629.1| - 2.5e-05 23.9 0.0 4.6e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain ABC_tran PF00005.22 gi|284162006|ref|YP_003400629.1| - 0.00041 20.6 0.0 0.00068 19.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter T2SE PF00437.15 gi|284162006|ref|YP_003400629.1| - 0.0011 17.8 0.0 0.002 17.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|284162006|ref|YP_003400629.1| - 0.0021 18.0 0.0 0.0032 17.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain GvpD PF07088.6 gi|284162006|ref|YP_003400629.1| - 0.0047 15.3 0.0 0.0082 14.5 0.0 1.3 1 0 0 1 1 1 1 GvpD gas vesicle protein NACHT PF05729.7 gi|284162006|ref|YP_003400629.1| - 0.005 16.5 0.0 0.043 13.4 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA PF00004.24 gi|284162006|ref|YP_003400629.1| - 0.005 17.0 0.0 3.7 7.7 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|284162006|ref|YP_003400629.1| - 0.0058 16.3 0.0 0.013 15.2 0.0 1.6 2 0 0 2 2 1 1 NTPase MobB PF03205.9 gi|284162006|ref|YP_003400629.1| - 0.0061 16.2 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|284162006|ref|YP_003400629.1| - 0.0063 16.2 0.1 0.027 14.1 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase AAA_29 PF13555.1 gi|284162006|ref|YP_003400629.1| - 0.0074 15.7 0.0 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain KaiC PF06745.8 gi|284162006|ref|YP_003400629.1| - 0.0074 15.4 0.1 0.016 14.3 0.1 1.5 1 0 0 1 1 1 1 KaiC AAA_23 PF13476.1 gi|284162006|ref|YP_003400629.1| - 0.0079 16.5 0.1 0.013 15.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain KAP_NTPase PF07693.9 gi|284162006|ref|YP_003400629.1| - 0.0085 15.1 0.0 0.009 15.0 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain TrwB_AAD_bind PF10412.4 gi|284162006|ref|YP_003400629.1| - 0.01 14.5 0.0 0.019 13.5 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.1 gi|284162006|ref|YP_003400629.1| - 0.011 16.5 0.5 0.027 15.3 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|284162006|ref|YP_003400629.1| - 0.012 15.5 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|284162006|ref|YP_003400629.1| - 0.017 14.8 0.1 0.029 14.0 0.0 1.5 1 1 0 1 1 1 0 Adenylylsulphate kinase UPF0079 PF02367.12 gi|284162006|ref|YP_003400629.1| - 0.017 14.7 0.1 0.032 13.8 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|284162006|ref|YP_003400629.1| - 0.025 14.0 0.1 0.044 13.2 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|284162006|ref|YP_003400629.1| - 0.036 14.3 0.0 0.084 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|284162006|ref|YP_003400629.1| - 0.038 13.8 0.1 0.37 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|284162006|ref|YP_003400629.1| - 0.039 13.4 0.0 0.072 12.5 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|284162006|ref|YP_003400629.1| - 0.075 12.4 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|284162006|ref|YP_003400629.1| - 0.08 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|284162006|ref|YP_003400629.1| - 0.092 11.8 0.0 0.96 8.5 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|284162006|ref|YP_003400629.1| - 0.11 12.6 0.0 0.5 10.5 0.0 2.2 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|284162006|ref|YP_003400629.1| - 0.12 11.8 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PRANC PF09372.5 gi|284162009|ref|YP_003400632.1| - 0.094 12.6 0.3 0.15 12.0 0.2 1.5 1 1 0 1 1 1 0 PRANC domain DUF4173 PF13777.1 gi|284162010|ref|YP_003400633.1| - 0.12 11.5 5.4 0.15 11.3 1.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4173) TctA PF01970.11 gi|284162010|ref|YP_003400633.1| - 1 7.7 6.1 0.35 9.2 2.1 1.7 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctA family Claudin_2 PF13903.1 gi|284162010|ref|YP_003400633.1| - 1.5 8.4 7.1 14 5.3 4.9 1.9 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF1070 PF06376.7 gi|284162010|ref|YP_003400633.1| - 1.7 8.5 4.9 0.44 10.4 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1070) DUF4131 PF13567.1 gi|284162010|ref|YP_003400633.1| - 1.9 7.8 8.2 43 3.4 5.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) MFS_1 PF07690.11 gi|284162010|ref|YP_003400633.1| - 2 7.0 7.6 0.22 10.2 1.6 1.7 1 1 0 1 1 1 0 Major Facilitator Superfamily DUF948 PF06103.6 gi|284162010|ref|YP_003400633.1| - 3 7.7 4.7 2.4 8.0 0.0 2.4 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) Papilloma_E5A PF05776.7 gi|284162010|ref|YP_003400633.1| - 5.1 7.3 8.0 4.7 7.4 0.1 2.2 2 0 0 2 2 2 0 Papillomavirus E5A protein DUF914 PF06027.7 gi|284162011|ref|YP_003400634.1| - 0.079 11.7 1.4 0.1 11.4 1.0 1.2 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF914) Trp_oprn_chp PF09534.5 gi|284162011|ref|YP_003400634.1| - 0.17 11.5 4.5 0.32 10.5 0.1 2.0 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF1049 PF06305.6 gi|284162011|ref|YP_003400634.1| - 0.39 10.2 14.6 2 7.9 1.2 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1049) MtrE PF04206.7 gi|284162011|ref|YP_003400634.1| - 0.83 8.6 6.3 1.4 7.8 0.1 2.5 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit E Tetraspannin PF00335.15 gi|284162011|ref|YP_003400634.1| - 1.3 8.2 5.0 0.58 9.3 0.7 1.9 2 0 0 2 2 2 0 Tetraspanin family DUF4064 PF13273.1 gi|284162011|ref|YP_003400634.1| - 4.9 7.3 9.4 1.2 9.2 3.3 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) C1_1 PF00130.17 gi|284162012|ref|YP_003400635.1| - 0.00063 19.4 0.2 0.00093 18.8 0.1 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF4428 PF14471.1 gi|284162012|ref|YP_003400635.1| - 0.049 13.3 2.6 0.19 11.4 1.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) C1_3 PF07649.7 gi|284162012|ref|YP_003400635.1| - 0.16 12.0 1.1 9.7 6.3 0.1 2.3 2 0 0 2 2 2 0 C1-like domain Phage_integrase PF00589.17 gi|284162013|ref|YP_003400636.1| - 3.2e-10 39.9 0.1 5.1e-10 39.3 0.1 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|284162013|ref|YP_003400636.1| - 0.0012 19.0 0.3 0.0047 17.2 0.0 2.2 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|284162013|ref|YP_003400636.1| - 0.096 12.8 0.3 0.62 10.2 0.0 2.4 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Put_DNA-bind_N PF06971.8 gi|284162014|ref|YP_003400637.1| - 0.057 13.1 0.0 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus DnaJ_CXXCXGXG PF00684.14 gi|284162014|ref|YP_003400637.1| - 0.11 12.5 0.4 0.27 11.3 0.1 1.7 2 0 0 2 2 2 0 DnaJ central domain Antiterm PF03589.8 gi|284162014|ref|YP_003400637.1| - 0.19 11.8 0.4 17 5.5 0.1 2.3 2 0 0 2 2 2 0 Antitermination protein DUF4428 PF14471.1 gi|284162015|ref|YP_003400638.1| - 0.0015 18.2 0.5 0.016 14.9 0.3 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4428) LIM PF00412.17 gi|284162015|ref|YP_003400638.1| - 0.2 11.7 3.4 2.4 8.2 0.9 2.2 2 0 0 2 2 2 0 LIM domain Gin PF10764.4 gi|284162015|ref|YP_003400638.1| - 1.3 8.8 4.6 9.2 6.0 0.5 3.0 3 0 0 3 3 3 0 Inhibitor of sigma-G Gin RHH_1 PF01402.16 gi|284162016|ref|YP_003400639.1| - 0.027 14.3 0.1 0.099 12.5 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family XH PF03469.9 gi|284162016|ref|YP_003400639.1| - 0.036 13.7 0.9 0.15 11.7 0.2 2.1 1 1 1 2 2 2 0 XH domain RSD-2 PF07547.8 gi|284162017|ref|YP_003400640.1| - 0.32 11.1 1.4 0.34 11.0 0.8 1.2 1 1 0 1 1 1 0 RSD-2 N-terminal domain Hjc PF01870.13 gi|284162019|ref|YP_003400642.1| - 0.029 13.9 0.0 0.048 13.2 0.0 1.5 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Gp37_Gp68 PF07505.6 gi|284162023|ref|YP_003400646.1| - 0.0075 15.4 1.4 0.15 11.2 1.0 2.1 1 1 0 1 1 1 1 Phage protein Gp37/Gp68 RHH_1 PF01402.16 gi|284162024|ref|YP_003400647.1| - 0.0021 17.8 0.0 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HxlR PF01638.12 gi|284162025|ref|YP_003400648.1| - 0.00031 20.3 0.8 0.0005 19.6 0.6 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|284162025|ref|YP_003400648.1| - 0.001 18.8 1.9 0.0017 18.1 0.7 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix Cdc6_C PF09079.6 gi|284162025|ref|YP_003400648.1| - 0.0045 16.6 0.1 0.0093 15.6 0.1 1.5 1 0 0 1 1 1 1 CDC6, C terminal HTH_27 PF13463.1 gi|284162025|ref|YP_003400648.1| - 0.013 15.8 0.9 0.058 13.7 0.0 2.5 3 0 0 3 3 3 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|284162025|ref|YP_003400648.1| - 0.016 14.8 0.3 0.061 12.9 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4364) YjcQ PF09639.5 gi|284162025|ref|YP_003400648.1| - 0.04 14.0 0.3 0.076 13.1 0.1 1.6 1 1 1 2 2 2 0 YjcQ protein Mrr_N PF14338.1 gi|284162025|ref|YP_003400648.1| - 0.092 12.8 0.2 6.1 7.0 0.0 2.5 1 1 2 3 3 3 0 Mrr N-terminal domain AbiH PF14253.1 gi|284162025|ref|YP_003400648.1| - 0.11 12.1 1.2 0.13 11.8 0.9 1.2 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH DUF1495 PF07381.6 gi|284162025|ref|YP_003400648.1| - 0.11 12.1 0.2 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) TrmB PF01978.14 gi|284162025|ref|YP_003400648.1| - 0.14 11.9 1.7 0.37 10.5 0.0 2.4 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|284162025|ref|YP_003400648.1| - 0.14 12.0 1.4 0.89 9.5 0.2 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_31 PF13560.1 gi|284162026|ref|YP_003400649.1| - 0.1 12.8 0.0 0.2 11.9 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain DUF4223 PF13978.1 gi|284162027|ref|YP_003400650.1| - 0.04 13.6 0.2 0.072 12.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4223) CAP PF00188.21 gi|284162028|ref|YP_003400651.1| - 3.5e-09 37.2 0.0 4.1e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 Cysteine-rich secretory protein family DUF2976 PF11190.3 gi|284162028|ref|YP_003400651.1| - 0.049 13.1 0.9 0.1 12.1 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) CcdA PF07362.7 gi|284162029|ref|YP_003400652.1| - 1.2e-08 34.6 1.0 1.2e-08 34.6 0.7 1.6 2 0 0 2 2 2 1 Post-segregation antitoxin CcdA RHH_3 PF12651.2 gi|284162029|ref|YP_003400652.1| - 0.012 15.3 2.5 0.053 13.2 1.8 2.0 1 1 0 1 1 1 0 Ribbon-helix-helix domain RHH_1 PF01402.16 gi|284162029|ref|YP_003400652.1| - 0.057 13.3 0.8 0.32 10.9 0.6 2.0 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family Linker_histone PF00538.14 gi|284162029|ref|YP_003400652.1| - 0.083 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 linker histone H1 and H5 family CCG PF02754.11 gi|284162030|ref|YP_003400653.1| - 3e-26 91.2 3.7 5.1e-16 58.4 0.0 3.2 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|284162030|ref|YP_003400653.1| - 9.1e-12 45.1 5.0 9.1e-12 45.1 3.5 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284162030|ref|YP_003400653.1| - 4e-10 39.5 5.1 9.8e-10 38.3 3.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284162030|ref|YP_003400653.1| - 2e-08 34.3 3.6 6.7e-08 32.6 2.5 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162030|ref|YP_003400653.1| - 1.5e-05 24.6 7.0 7.2e-05 22.4 5.0 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284162030|ref|YP_003400653.1| - 8.9e-05 22.7 5.6 8.9e-05 22.7 3.8 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284162030|ref|YP_003400653.1| - 0.0002 20.8 12.5 0.013 15.0 1.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284162030|ref|YP_003400653.1| - 0.00027 21.2 5.5 0.31 11.5 0.3 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284162030|ref|YP_003400653.1| - 0.0065 17.1 6.4 1 10.1 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|284162030|ref|YP_003400653.1| - 0.0094 15.7 9.0 0.0094 15.7 6.3 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162030|ref|YP_003400653.1| - 0.015 15.1 12.6 0.5 10.4 1.1 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Prok-RING_1 PF14446.1 gi|284162030|ref|YP_003400653.1| - 0.33 10.7 0.0 0.33 10.7 0.0 2.9 3 0 0 3 3 2 0 Prokaryotic RING finger family 1 Fer4_15 PF13459.1 gi|284162030|ref|YP_003400653.1| - 0.8 10.3 0.0 0.8 10.3 0.0 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|284162030|ref|YP_003400653.1| - 1.6 9.1 11.9 7.3 7.0 2.0 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|284162030|ref|YP_003400653.1| - 4.7 8.0 15.2 4.9 7.9 1.5 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284162030|ref|YP_003400653.1| - 6 7.4 18.1 3.8 8.0 1.7 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain PHD_2 PF13831.1 gi|284162030|ref|YP_003400653.1| - 9.8 5.5 11.8 2.2 7.6 0.0 3.9 4 0 0 4 4 4 0 PHD-finger ETF PF01012.16 gi|284162031|ref|YP_003400654.1| - 3.8e-13 49.4 0.1 7.2e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Radical_SAM PF04055.16 gi|284162031|ref|YP_003400654.1| - 0.055 13.6 0.2 0.12 12.5 0.0 1.5 2 0 0 2 2 2 0 Radical SAM superfamily Clathrin PF00637.15 gi|284162031|ref|YP_003400654.1| - 0.078 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS ETF_alpha PF00766.14 gi|284162032|ref|YP_003400655.1| - 3.2e-24 84.3 0.6 7.8e-24 83.1 0.4 1.7 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|284162032|ref|YP_003400655.1| - 2.7e-17 62.9 0.9 3.8e-15 55.9 0.0 3.0 2 2 1 3 3 3 1 Electron transfer flavoprotein domain tRNA_edit PF04073.10 gi|284162033|ref|YP_003400656.1| - 1.4e-29 102.4 0.1 1.7e-29 102.1 0.1 1.0 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain HTH_23 PF13384.1 gi|284162033|ref|YP_003400656.1| - 0.0091 15.6 0.1 0.02 14.5 0.1 1.6 1 1 0 1 1 1 1 Homeodomain-like domain MdcE PF06833.6 gi|284162033|ref|YP_003400656.1| - 0.021 14.0 0.1 0.024 13.8 0.1 1.1 1 0 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) SpoIIID PF12116.3 gi|284162033|ref|YP_003400656.1| - 0.022 14.6 0.4 0.043 13.7 0.3 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_17 PF12728.2 gi|284162033|ref|YP_003400656.1| - 0.036 14.3 0.4 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|284162033|ref|YP_003400656.1| - 0.047 13.6 0.3 0.11 12.4 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain 3HCDH_N PF02737.13 gi|284162033|ref|YP_003400656.1| - 0.051 13.2 0.7 0.07 12.7 0.5 1.1 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF790 PF05626.6 gi|284162033|ref|YP_003400656.1| - 0.051 12.0 0.2 0.067 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF790) Sigma70_ECF PF07638.6 gi|284162033|ref|YP_003400656.1| - 0.061 12.9 0.2 0.084 12.5 0.1 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_Mga PF08280.6 gi|284162033|ref|YP_003400656.1| - 0.069 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain AP_endonuc_2 PF01261.19 gi|284162034|ref|YP_003400657.1| - 7e-24 84.3 0.0 8.4e-24 84.0 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|284162034|ref|YP_003400657.1| - 0.0027 16.7 0.0 0.0053 15.8 0.0 1.4 1 1 0 1 1 1 1 UV-endonuclease UvdE ADP_ribosyl_GH PF03747.9 gi|284162035|ref|YP_003400658.1| - 3.4e-60 204.2 0.0 3.8e-60 204.1 0.0 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase EPSP_synthase PF00275.15 gi|284162036|ref|YP_003400659.1| - 1.4e-93 313.5 0.0 1.8e-93 313.2 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Topoisom_bac PF01131.15 gi|284162037|ref|YP_003400660.1| - 9.9e-76 255.1 0.0 1.8e-44 152.2 0.0 2.8 2 1 0 2 2 2 2 DNA topoisomerase Toprim PF01751.17 gi|284162037|ref|YP_003400660.1| - 7.6e-22 77.1 0.0 3.3e-21 75.1 0.0 2.2 1 0 0 1 1 1 1 Toprim domain LAGLIDADG_3 PF14528.1 gi|284162037|ref|YP_003400660.1| - 4.5e-17 62.0 1.8 3.8e-14 52.6 0.2 3.7 3 0 0 3 3 3 2 LAGLIDADG-like domain DEAD PF00270.24 gi|284162037|ref|YP_003400660.1| - 3.7e-15 55.8 0.0 1.6e-14 53.7 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase SecA_DEAD PF07517.9 gi|284162037|ref|YP_003400660.1| - 2.3e-06 27.0 1.4 0.00021 20.6 0.0 3.0 3 0 0 3 3 3 1 SecA DEAD-like domain LAGLIDADG_1 PF00961.14 gi|284162037|ref|YP_003400660.1| - 0.00014 22.3 0.6 0.00014 22.3 0.4 4.1 4 0 0 4 4 2 1 LAGLIDADG endonuclease Hint PF01079.15 gi|284162037|ref|YP_003400660.1| - 0.00016 20.9 0.0 0.00049 19.3 0.0 1.7 2 0 0 2 2 2 1 Hint module ResIII PF04851.10 gi|284162037|ref|YP_003400660.1| - 0.00052 19.9 0.1 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit NRDD PF13597.1 gi|284162037|ref|YP_003400660.1| - 0.0048 15.0 0.7 0.0082 14.2 0.5 1.2 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Helicase_C PF00271.26 gi|284162037|ref|YP_003400660.1| - 0.0066 16.2 0.1 0.34 10.8 0.0 3.2 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_25 PF13481.1 gi|284162037|ref|YP_003400660.1| - 0.0074 15.7 0.1 0.036 13.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain HypA PF01155.14 gi|284162037|ref|YP_003400660.1| - 0.053 13.2 5.3 0.089 12.4 0.4 3.0 3 0 0 3 3 3 0 Hydrogenase expression/synthesis hypA family Hom_end_hint PF05203.11 gi|284162037|ref|YP_003400660.1| - 0.077 12.7 0.0 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 Hom_end-associated Hint zinc_ribbon_2 PF13240.1 gi|284162037|ref|YP_003400660.1| - 1.3 8.5 3.2 0.7 9.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|284162037|ref|YP_003400660.1| - 5.2 6.9 7.8 0.86 9.4 0.6 2.5 2 0 0 2 2 2 0 Double zinc ribbon NikR_C PF08753.6 gi|284162038|ref|YP_003400661.1| - 2.8e-25 88.0 4.4 3.8e-25 87.5 3.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|284162038|ref|YP_003400661.1| - 2.1e-10 40.0 0.1 7e-10 38.3 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Acyl-CoA_dh_1 PF00441.19 gi|284162039|ref|YP_003400662.1| - 6.9e-28 97.6 0.0 1e-27 97.0 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|284162039|ref|YP_003400662.1| - 1.7e-13 49.8 0.1 3.5e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|284162039|ref|YP_003400662.1| - 0.045 14.0 0.0 5.3 7.2 0.0 2.2 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain AsnC_trans_reg PF01037.16 gi|284162040|ref|YP_003400663.1| - 9.7e-15 54.0 1.2 1.5e-14 53.3 0.1 1.8 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|284162040|ref|YP_003400663.1| - 3.5e-13 48.6 1.8 6.9e-13 47.7 1.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284162040|ref|YP_003400663.1| - 9.7e-13 47.4 0.4 1.5e-12 46.8 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284162040|ref|YP_003400663.1| - 1.3e-07 31.1 0.2 3.8e-07 29.6 0.1 1.7 2 0 0 2 2 1 1 HTH domain TrmB PF01978.14 gi|284162040|ref|YP_003400663.1| - 4.1e-06 26.4 0.7 8.8e-06 25.3 0.1 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284162040|ref|YP_003400663.1| - 5.4e-06 26.1 0.0 1e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|284162040|ref|YP_003400663.1| - 2.1e-05 24.0 0.1 4e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|284162040|ref|YP_003400663.1| - 3.6e-05 23.1 0.5 7.1e-05 22.1 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_23 PF13384.1 gi|284162040|ref|YP_003400663.1| - 0.00014 21.3 0.0 0.00026 20.5 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|284162040|ref|YP_003400663.1| - 0.00023 20.5 0.0 0.00037 19.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|284162040|ref|YP_003400663.1| - 0.00043 19.7 1.5 0.00096 18.6 0.1 2.2 3 0 0 3 3 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|284162040|ref|YP_003400663.1| - 0.00051 19.9 0.0 0.00087 19.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284162040|ref|YP_003400663.1| - 0.0015 18.1 0.0 0.0029 17.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|284162040|ref|YP_003400663.1| - 0.002 17.7 0.0 0.0043 16.7 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|284162040|ref|YP_003400663.1| - 0.0021 17.9 0.1 0.0065 16.3 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|284162040|ref|YP_003400663.1| - 0.0023 18.2 0.2 0.0082 16.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain UPF0122 PF04297.9 gi|284162040|ref|YP_003400663.1| - 0.0039 17.1 0.3 0.016 15.2 0.0 2.0 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.5 gi|284162040|ref|YP_003400663.1| - 0.0047 16.4 0.0 0.0075 15.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|284162040|ref|YP_003400663.1| - 0.0055 16.3 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family GerE PF00196.14 gi|284162040|ref|YP_003400663.1| - 0.0062 15.8 0.1 0.012 14.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_41 PF14502.1 gi|284162040|ref|YP_003400663.1| - 0.0063 16.1 0.2 0.062 12.9 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.1 gi|284162040|ref|YP_003400663.1| - 0.0076 16.4 0.5 0.027 14.6 0.1 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|284162040|ref|YP_003400663.1| - 0.009 16.0 1.1 0.032 14.2 0.1 2.2 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_30 PF13556.1 gi|284162040|ref|YP_003400663.1| - 0.017 14.6 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.11 gi|284162040|ref|YP_003400663.1| - 0.017 14.3 0.0 0.031 13.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|284162040|ref|YP_003400663.1| - 0.02 14.0 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Rrf2 PF02082.15 gi|284162040|ref|YP_003400663.1| - 0.021 14.9 1.2 0.082 13.0 0.0 2.2 3 0 0 3 3 2 0 Transcriptional regulator HTH_22 PF13309.1 gi|284162040|ref|YP_003400663.1| - 0.023 14.4 0.0 0.054 13.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain PadR PF03551.9 gi|284162040|ref|YP_003400663.1| - 0.027 14.2 0.2 0.11 12.2 0.0 2.1 3 0 0 3 3 1 0 Transcriptional regulator PadR-like family HTH_10 PF04967.7 gi|284162040|ref|YP_003400663.1| - 0.033 13.7 0.1 0.088 12.4 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Mga PF05043.8 gi|284162040|ref|YP_003400663.1| - 0.048 13.9 0.1 0.13 12.5 0.0 1.7 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|284162040|ref|YP_003400663.1| - 0.052 13.2 0.1 0.13 11.9 0.1 1.6 1 0 0 1 1 1 0 Transposase FeoC PF09012.5 gi|284162040|ref|YP_003400663.1| - 0.06 13.0 0.1 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 FeoC like transcriptional regulator DUF4423 PF14394.1 gi|284162040|ref|YP_003400663.1| - 0.064 12.7 1.0 0.13 11.7 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) BMFP PF04380.8 gi|284162040|ref|YP_003400663.1| - 0.066 13.3 0.2 9.1 6.5 0.0 2.3 2 0 0 2 2 2 0 Membrane fusogenic activity TetR_N PF00440.18 gi|284162040|ref|YP_003400663.1| - 0.074 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_17 PF12728.2 gi|284162040|ref|YP_003400663.1| - 0.084 13.1 0.1 0.54 10.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|284162040|ref|YP_003400663.1| - 0.085 12.7 0.9 0.13 12.1 0.1 1.7 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2089 PF09862.4 gi|284162040|ref|YP_003400663.1| - 0.14 11.9 1.1 0.59 9.9 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2089) ATP_bind_1 PF03029.12 gi|284162041|ref|YP_003400664.1| - 2.1e-50 171.4 0.1 2.4e-50 171.2 0.1 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|284162041|ref|YP_003400664.1| - 1.4e-08 35.6 0.0 2.3e-08 34.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|284162041|ref|YP_003400664.1| - 3.4e-08 33.1 0.1 2.6e-07 30.2 0.1 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_10 PF12846.2 gi|284162041|ref|YP_003400664.1| - 3.2e-06 26.8 0.0 4.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain NTPase_1 PF03266.10 gi|284162041|ref|YP_003400664.1| - 2.3e-05 24.1 0.2 0.0022 17.7 0.0 2.3 2 0 0 2 2 2 1 NTPase MMR_HSR1 PF01926.18 gi|284162041|ref|YP_003400664.1| - 4.3e-05 23.4 0.0 8.3e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|284162041|ref|YP_003400664.1| - 9.7e-05 22.1 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase MobB PF03205.9 gi|284162041|ref|YP_003400664.1| - 0.00016 21.4 0.0 0.00045 19.9 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|284162041|ref|YP_003400664.1| - 0.00016 21.5 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|284162041|ref|YP_003400664.1| - 0.00019 21.7 0.0 0.00031 21.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Dynamin_N PF00350.18 gi|284162041|ref|YP_003400664.1| - 0.00033 20.5 0.2 0.48 10.2 0.2 2.2 1 1 0 2 2 2 2 Dynamin family AAA_14 PF13173.1 gi|284162041|ref|YP_003400664.1| - 0.00046 20.0 0.0 0.00069 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|284162041|ref|YP_003400664.1| - 0.00058 19.3 0.0 0.00094 18.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|284162041|ref|YP_003400664.1| - 0.00091 19.3 0.0 0.0022 18.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284162041|ref|YP_003400664.1| - 0.001 19.1 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain ArgK PF03308.11 gi|284162041|ref|YP_003400664.1| - 0.0011 17.8 0.0 0.02 13.6 0.0 2.1 2 0 0 2 2 2 1 ArgK protein AAA_30 PF13604.1 gi|284162041|ref|YP_003400664.1| - 0.0013 18.3 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|284162041|ref|YP_003400664.1| - 0.0014 19.1 0.2 0.013 15.9 0.2 2.1 1 1 0 1 1 1 1 Miro-like protein AAA_5 PF07728.9 gi|284162041|ref|YP_003400664.1| - 0.002 17.8 0.0 0.014 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|284162041|ref|YP_003400664.1| - 0.0024 16.8 0.0 0.0036 16.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein SRP54 PF00448.17 gi|284162041|ref|YP_003400664.1| - 0.0024 17.3 0.0 0.0096 15.3 0.0 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain FeoB_N PF02421.13 gi|284162041|ref|YP_003400664.1| - 0.0025 17.0 0.4 0.087 12.1 0.0 2.7 2 1 0 3 3 3 1 Ferrous iron transport protein B cobW PF02492.14 gi|284162041|ref|YP_003400664.1| - 0.0031 16.9 0.2 0.0099 15.3 0.2 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|284162041|ref|YP_003400664.1| - 0.0041 16.3 0.0 0.0064 15.7 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 G-alpha PF00503.15 gi|284162041|ref|YP_003400664.1| - 0.0047 15.6 0.0 0.033 12.8 0.0 1.9 2 0 0 2 2 2 1 G-protein alpha subunit NACHT PF05729.7 gi|284162041|ref|YP_003400664.1| - 0.0048 16.5 0.0 0.0091 15.6 0.0 1.3 1 0 0 1 1 1 1 NACHT domain PRK PF00485.13 gi|284162041|ref|YP_003400664.1| - 0.0088 15.6 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.22 gi|284162041|ref|YP_003400664.1| - 0.011 16.0 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter DUF87 PF01935.12 gi|284162041|ref|YP_003400664.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 Ras PF00071.17 gi|284162041|ref|YP_003400664.1| - 0.012 14.9 0.0 2.2 7.6 0.0 2.3 2 0 0 2 2 2 0 Ras family AAA_28 PF13521.1 gi|284162041|ref|YP_003400664.1| - 0.021 14.7 0.0 0.03 14.2 0.0 1.3 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|284162041|ref|YP_003400664.1| - 0.023 14.8 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase KAP_NTPase PF07693.9 gi|284162041|ref|YP_003400664.1| - 0.027 13.4 0.0 0.027 13.4 0.0 1.2 1 1 0 1 1 1 0 KAP family P-loop domain AAA_29 PF13555.1 gi|284162041|ref|YP_003400664.1| - 0.029 13.9 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Spore_IV_A PF09547.5 gi|284162041|ref|YP_003400664.1| - 0.043 12.4 0.0 0.069 11.8 0.0 1.3 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) DUF258 PF03193.11 gi|284162041|ref|YP_003400664.1| - 0.047 12.8 0.0 0.25 10.5 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|284162041|ref|YP_003400664.1| - 0.05 12.7 0.0 0.083 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.8 gi|284162041|ref|YP_003400664.1| - 0.054 12.4 0.0 0.11 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PTS_IIB PF02302.12 gi|284162041|ref|YP_003400664.1| - 0.058 13.8 0.0 0.17 12.3 0.0 1.8 2 0 0 2 2 1 0 PTS system, Lactose/Cellobiose specific IIB subunit AAA_PrkA PF08298.6 gi|284162041|ref|YP_003400664.1| - 0.072 11.7 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain FtsK_SpoIIIE PF01580.13 gi|284162041|ref|YP_003400664.1| - 0.087 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA PF00004.24 gi|284162041|ref|YP_003400664.1| - 0.088 13.0 0.0 0.25 11.5 0.0 1.9 3 0 0 3 3 1 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.4 gi|284162041|ref|YP_003400664.1| - 0.11 11.9 0.1 13 5.2 0.0 3.0 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Septin PF00735.13 gi|284162041|ref|YP_003400664.1| - 0.12 11.3 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Septin MipZ PF09140.6 gi|284162041|ref|YP_003400664.1| - 0.13 11.3 0.0 0.49 9.4 0.0 2.0 1 1 0 1 1 1 0 ATPase MipZ Viral_helicase1 PF01443.13 gi|284162041|ref|YP_003400664.1| - 0.16 11.4 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Orn_Arg_deC_N PF02784.11 gi|284162042|ref|YP_003400665.1| - 4.9e-59 199.5 0.0 2.5e-58 197.2 0.0 1.8 1 1 1 2 2 2 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|284162042|ref|YP_003400665.1| - 4.9e-26 90.7 0.0 9.1e-26 89.8 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|284162042|ref|YP_003400665.1| - 2.4e-10 40.3 0.0 4.9e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain APH PF01636.18 gi|284162043|ref|YP_003400666.1| - 0.0015 18.2 0.0 0.023 14.4 0.0 2.0 2 0 0 2 2 2 1 Phosphotransferase enzyme family DUF2661 PF10860.3 gi|284162043|ref|YP_003400666.1| - 0.0079 16.3 1.5 0.12 12.5 0.7 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF2661) GATase PF00117.23 gi|284162044|ref|YP_003400667.1| - 8.3e-42 142.8 0.0 9.2e-42 142.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284162044|ref|YP_003400667.1| - 4.6e-15 55.6 1.3 9.5e-14 51.3 0.1 2.4 1 1 1 2 2 2 1 Peptidase C26 SNO PF01174.14 gi|284162044|ref|YP_003400667.1| - 0.0042 16.7 0.2 0.085 12.4 0.2 2.2 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Tup_N PF08581.5 gi|284162044|ref|YP_003400667.1| - 0.013 15.7 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Tup N-terminal PQQ_2 PF13360.1 gi|284162045|ref|YP_003400668.1| - 2.8e-05 23.6 0.2 0.00048 19.6 0.1 2.3 1 1 1 2 2 2 2 PQQ-like domain HTH_21 PF13276.1 gi|284162045|ref|YP_003400668.1| - 0.041 13.8 0.1 0.18 11.8 0.0 2.1 1 0 0 1 1 1 0 HTH-like domain Rdx PF10262.4 gi|284162045|ref|YP_003400668.1| - 0.057 13.4 0.1 34 4.5 0.0 3.4 3 0 0 3 3 3 0 Rdx family PQQ PF01011.16 gi|284162045|ref|YP_003400668.1| - 0.11 12.0 0.3 44 3.8 0.0 3.5 3 1 0 3 3 3 0 PQQ enzyme repeat UbiA PF01040.13 gi|284162046|ref|YP_003400669.1| - 2.2e-35 122.1 26.2 2.9e-35 121.7 18.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Trp_oprn_chp PF09534.5 gi|284162046|ref|YP_003400669.1| - 0.0086 15.7 6.9 0.6 9.6 0.2 2.3 2 0 0 2 2 2 2 Tryptophan-associated transmembrane protein (Trp_oprn_chp) BBP1_C PF15272.1 gi|284162047|ref|YP_003400670.1| - 0.026 14.0 2.9 0.049 13.1 2.0 1.4 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal CGGC PF08821.6 gi|284162048|ref|YP_003400671.1| - 8.5e-18 64.3 1.8 9.8e-18 64.1 1.3 1.0 1 0 0 1 1 1 1 CGGC domain Fer4_9 PF13187.1 gi|284162048|ref|YP_003400671.1| - 0.2 11.9 4.1 0.86 9.9 2.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284162048|ref|YP_003400671.1| - 0.21 11.4 5.3 0.25 11.2 2.3 2.1 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162048|ref|YP_003400671.1| - 1.9 8.3 7.7 8.9 6.2 5.3 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Ribosomal_S2 PF00318.15 gi|284162049|ref|YP_003400672.1| - 4.8e-43 146.8 0.0 1.3e-21 76.7 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.1 gi|284162049|ref|YP_003400672.1| - 0.046 13.0 0.2 0.067 12.5 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain Avirulence PF03377.8 gi|284162049|ref|YP_003400672.1| - 0.14 10.8 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA DUF555 PF04475.7 gi|284162050|ref|YP_003400673.1| - 9.2e-49 163.6 0.1 1.1e-48 163.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Jag_N PF14804.1 gi|284162050|ref|YP_003400673.1| - 0.0071 16.3 0.1 0.63 10.0 0.0 2.3 2 0 0 2 2 2 2 Jag N-terminus zinc_ribbon_2 PF13240.1 gi|284162050|ref|YP_003400673.1| - 0.013 14.9 0.1 0.02 14.3 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain MMR_HSR1 PF01926.18 gi|284162051|ref|YP_003400674.1| - 2.2e-17 63.0 0.0 2.6e-14 53.1 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|284162051|ref|YP_003400674.1| - 2.6e-10 39.7 0.0 5.6e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B DUF258 PF03193.11 gi|284162051|ref|YP_003400674.1| - 1.1e-05 24.7 0.0 1.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|284162051|ref|YP_003400674.1| - 7.7e-05 22.2 0.0 0.0041 16.5 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|284162051|ref|YP_003400674.1| - 9.4e-05 21.9 0.1 0.031 13.7 0.0 3.0 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.16 gi|284162051|ref|YP_003400674.1| - 0.0018 17.5 0.1 0.015 14.5 0.0 2.1 2 0 0 2 2 2 1 ADP-ribosylation factor family PPV_E1_C PF00519.12 gi|284162051|ref|YP_003400674.1| - 0.0026 16.4 0.0 0.0034 16.0 0.0 1.1 1 0 0 1 1 1 1 Papillomavirus helicase Miro PF08477.8 gi|284162051|ref|YP_003400674.1| - 0.0048 17.3 0.0 0.0098 16.3 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|284162051|ref|YP_003400674.1| - 0.0077 16.0 0.0 1.1 9.0 0.0 3.0 3 0 0 3 3 3 1 Dynamin family MobB PF03205.9 gi|284162051|ref|YP_003400674.1| - 0.03 14.0 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B 6PF2K PF01591.13 gi|284162051|ref|YP_003400674.1| - 0.059 12.4 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase DUF3315 PF11776.3 gi|284162051|ref|YP_003400674.1| - 0.071 12.6 0.0 0.88 9.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3315) AAA PF00004.24 gi|284162051|ref|YP_003400674.1| - 0.083 13.0 0.0 0.22 11.7 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AIG1 PF04548.11 gi|284162051|ref|YP_003400674.1| - 0.086 11.9 0.0 0.16 11.0 0.0 1.6 1 1 0 1 1 1 0 AIG1 family DAP3 PF10236.4 gi|284162051|ref|YP_003400674.1| - 0.094 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DNA_ligase_ZBD PF03119.11 gi|284162051|ref|YP_003400674.1| - 0.11 12.2 0.1 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Ras PF00071.17 gi|284162051|ref|YP_003400674.1| - 0.11 11.9 0.1 0.25 10.7 0.0 1.6 2 0 0 2 2 2 0 Ras family AAA_14 PF13173.1 gi|284162051|ref|YP_003400674.1| - 0.11 12.4 0.0 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain RusA PF05866.6 gi|284162053|ref|YP_003400676.1| - 0.021 15.2 0.1 0.035 14.4 0.0 1.3 1 0 0 1 1 1 0 Endodeoxyribonuclease RusA Seryl_tRNA_N PF02403.17 gi|284162055|ref|YP_003400678.1| - 4.7e-05 23.3 8.0 6.4e-05 22.9 5.5 1.2 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DASH_Dad2 PF08654.5 gi|284162055|ref|YP_003400678.1| - 0.00069 19.5 1.8 0.00084 19.2 1.3 1.3 1 0 0 1 1 1 1 DASH complex subunit Dad2 FlaC_arch PF05377.6 gi|284162055|ref|YP_003400678.1| - 0.0013 18.5 5.1 0.0013 18.5 3.6 1.9 2 1 0 2 2 1 1 Flagella accessory protein C (FlaC) LPP PF04728.8 gi|284162055|ref|YP_003400678.1| - 0.0021 17.8 0.2 0.012 15.4 0.1 2.1 1 1 1 2 2 2 1 Lipoprotein leucine-zipper PEARLI-4 PF05278.7 gi|284162055|ref|YP_003400678.1| - 0.0022 17.4 2.9 0.0031 16.9 2.0 1.3 1 0 0 1 1 1 1 Arabidopsis phospholipase-like protein (PEARLI 4) NPV_P10 PF05531.7 gi|284162055|ref|YP_003400678.1| - 0.0025 18.0 5.1 0.052 13.7 3.5 2.1 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Mnd1 PF03962.10 gi|284162055|ref|YP_003400678.1| - 0.0038 16.9 3.3 0.0038 16.9 2.3 1.3 1 1 0 1 1 1 1 Mnd1 family Laminin_II PF06009.7 gi|284162055|ref|YP_003400678.1| - 0.0047 16.6 5.0 0.014 15.1 3.5 1.7 1 1 0 1 1 1 1 Laminin Domain II Snapin_Pallidin PF14712.1 gi|284162055|ref|YP_003400678.1| - 0.0053 17.0 4.8 0.0054 17.0 2.7 1.5 1 1 0 1 1 1 1 Snapin/Pallidin DUF1664 PF07889.7 gi|284162055|ref|YP_003400678.1| - 0.0065 16.2 6.3 0.011 15.4 4.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1664) TMCO5 PF14992.1 gi|284162055|ref|YP_003400678.1| - 0.007 15.5 4.8 0.0075 15.4 3.3 1.1 1 0 0 1 1 1 1 TMCO5 family Syntaxin-6_N PF09177.6 gi|284162055|ref|YP_003400678.1| - 0.0091 16.3 3.7 0.019 15.3 2.5 1.6 1 1 0 1 1 1 1 Syntaxin 6, N-terminal COG5 PF10392.4 gi|284162055|ref|YP_003400678.1| - 0.0099 15.8 1.9 0.028 14.3 1.3 1.8 1 1 0 1 1 1 1 Golgi transport complex subunit 5 BLOC1_2 PF10046.4 gi|284162055|ref|YP_003400678.1| - 0.012 15.7 4.3 0.012 15.7 3.0 1.9 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_I PF06008.9 gi|284162055|ref|YP_003400678.1| - 0.012 14.9 2.8 0.013 14.8 2.0 1.0 1 0 0 1 1 1 0 Laminin Domain I DUF4140 PF13600.1 gi|284162055|ref|YP_003400678.1| - 0.012 16.0 2.0 0.015 15.7 0.1 1.8 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DivIC PF04977.10 gi|284162055|ref|YP_003400678.1| - 0.013 14.9 6.0 0.016 14.6 2.3 2.2 2 1 0 2 2 2 0 Septum formation initiator Ax_dynein_light PF10211.4 gi|284162055|ref|YP_003400678.1| - 0.014 15.2 3.3 0.017 14.9 2.3 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain DUF1515 PF07439.6 gi|284162055|ref|YP_003400678.1| - 0.015 15.0 2.5 0.022 14.5 1.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) Tropomyosin_1 PF12718.2 gi|284162055|ref|YP_003400678.1| - 0.02 14.7 6.7 0.049 13.4 4.7 1.6 1 1 0 1 1 1 0 Tropomyosin like PhoU_div PF01865.11 gi|284162055|ref|YP_003400678.1| - 0.025 13.7 4.3 0.033 13.3 3.0 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF47 Viral_P18 PF04521.8 gi|284162055|ref|YP_003400678.1| - 0.026 13.9 0.9 0.026 13.9 0.6 1.4 2 0 0 2 2 1 0 ssRNA positive strand viral 18kD cysteine rich protein Fmp27_WPPW PF10359.4 gi|284162055|ref|YP_003400678.1| - 0.028 12.8 2.2 0.029 12.8 1.5 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TMF_DNA_bd PF12329.3 gi|284162055|ref|YP_003400678.1| - 0.029 14.1 5.0 0.029 14.1 3.5 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|284162055|ref|YP_003400678.1| - 0.033 13.7 2.6 0.042 13.4 1.8 1.3 1 0 0 1 1 1 0 IncA protein Cauli_AT PF03233.8 gi|284162055|ref|YP_003400678.1| - 0.034 13.8 6.5 0.041 13.6 4.5 1.1 1 0 0 1 1 1 0 Aphid transmission protein MAD PF05557.8 gi|284162055|ref|YP_003400678.1| - 0.037 12.1 5.1 0.036 12.1 3.5 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein bZIP_2 PF07716.10 gi|284162055|ref|YP_003400678.1| - 0.043 13.6 4.1 0.16 11.8 0.8 2.2 2 0 0 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|284162055|ref|YP_003400678.1| - 0.043 12.8 3.3 0.044 12.8 2.3 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Nup54 PF13874.1 gi|284162055|ref|YP_003400678.1| - 0.043 13.4 2.2 0.055 13.1 1.5 1.3 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 PspB PF06667.7 gi|284162055|ref|YP_003400678.1| - 0.044 13.7 1.1 0.044 13.7 0.8 2.0 1 1 0 2 2 2 0 Phage shock protein B Lebercilin PF15619.1 gi|284162055|ref|YP_003400678.1| - 0.045 13.1 4.0 0.058 12.8 2.8 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Tropomyosin PF00261.15 gi|284162055|ref|YP_003400678.1| - 0.046 12.8 7.3 0.094 11.7 5.1 1.6 1 1 0 1 1 1 0 Tropomyosin V_ATPase_I PF01496.14 gi|284162055|ref|YP_003400678.1| - 0.046 11.5 2.9 0.046 11.5 2.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family XhlA PF10779.4 gi|284162055|ref|YP_003400678.1| - 0.047 13.5 12.7 0.024 14.5 5.3 2.2 1 1 1 2 2 2 0 Haemolysin XhlA FlxA PF14282.1 gi|284162055|ref|YP_003400678.1| - 0.052 13.4 3.5 0.16 11.8 1.1 2.0 2 0 0 2 2 2 0 FlxA-like protein AAA_13 PF13166.1 gi|284162055|ref|YP_003400678.1| - 0.055 11.9 4.6 0.056 11.9 3.2 1.1 1 0 0 1 1 1 0 AAA domain IFT57 PF10498.4 gi|284162055|ref|YP_003400678.1| - 0.056 12.1 3.1 0.06 12.0 2.1 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 HR1 PF02185.11 gi|284162055|ref|YP_003400678.1| - 0.058 13.1 0.7 0.058 13.1 0.5 1.9 2 0 0 2 2 2 0 Hr1 repeat DUF904 PF06005.7 gi|284162055|ref|YP_003400678.1| - 0.064 13.5 6.9 0.11 12.8 4.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF904) Spc24 PF08286.6 gi|284162055|ref|YP_003400678.1| - 0.091 12.4 4.3 0.3 10.7 3.0 1.8 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Spc7 PF08317.6 gi|284162055|ref|YP_003400678.1| - 0.092 11.3 7.3 0.11 11.1 5.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Rootletin PF15035.1 gi|284162055|ref|YP_003400678.1| - 0.094 12.6 1.3 0.11 12.4 0.9 1.1 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF948 PF06103.6 gi|284162055|ref|YP_003400678.1| - 0.096 12.5 4.5 0.15 11.9 3.0 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) HSBP1 PF06825.7 gi|284162055|ref|YP_003400678.1| - 0.1 12.2 1.0 0.76 9.3 0.7 2.3 1 1 0 1 1 1 0 Heat shock factor binding protein 1 DUF4446 PF14584.1 gi|284162055|ref|YP_003400678.1| - 0.1 12.4 1.9 0.11 12.3 0.6 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF4446) Lge1 PF11488.3 gi|284162055|ref|YP_003400678.1| - 0.12 12.5 4.1 0.087 13.0 1.5 1.7 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 PspA_IM30 PF04012.7 gi|284162055|ref|YP_003400678.1| - 0.13 11.6 3.8 0.2 10.9 2.6 1.4 1 1 0 1 1 1 0 PspA/IM30 family DUF2730 PF10805.3 gi|284162055|ref|YP_003400678.1| - 0.13 11.9 4.0 0.26 11.0 2.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) FlgN PF05130.7 gi|284162055|ref|YP_003400678.1| - 0.13 12.4 3.3 0.16 12.2 2.3 1.2 1 0 0 1 1 1 0 FlgN protein Translin PF01997.11 gi|284162055|ref|YP_003400678.1| - 0.14 11.7 2.5 0.085 12.4 0.6 1.5 2 0 0 2 2 1 0 Translin family Reo_sigmaC PF04582.7 gi|284162055|ref|YP_003400678.1| - 0.15 11.2 0.2 0.16 11.0 0.2 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DUF724 PF05266.9 gi|284162055|ref|YP_003400678.1| - 0.15 11.6 7.9 0.17 11.5 5.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Baculo_PEP_C PF04513.7 gi|284162055|ref|YP_003400678.1| - 0.17 11.7 1.2 0.26 11.0 0.8 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus TBPIP PF07106.8 gi|284162055|ref|YP_003400678.1| - 0.17 11.4 9.0 0.66 9.5 6.2 1.8 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Fib_alpha PF08702.5 gi|284162055|ref|YP_003400678.1| - 0.18 11.9 4.1 0.33 11.0 1.0 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF607 PF04678.8 gi|284162055|ref|YP_003400678.1| - 0.19 11.6 1.0 0.21 11.4 0.5 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF607 Prenyltransf PF01255.14 gi|284162055|ref|YP_003400678.1| - 0.2 10.7 1.5 0.21 10.6 1.0 1.0 1 0 0 1 1 1 0 Putative undecaprenyl diphosphate synthase TEX12 PF15219.1 gi|284162055|ref|YP_003400678.1| - 0.22 11.4 1.5 0.34 10.9 0.4 1.8 1 1 1 2 2 2 0 Testis-expressed 12 Prefoldin_2 PF01920.15 gi|284162055|ref|YP_003400678.1| - 0.23 11.2 10.0 0.053 13.2 3.0 2.2 1 1 1 2 2 2 0 Prefoldin subunit DUF2203 PF09969.4 gi|284162055|ref|YP_003400678.1| - 0.25 11.5 2.3 0.35 11.1 1.6 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Uds1 PF15456.1 gi|284162055|ref|YP_003400678.1| - 0.31 11.0 3.1 1.6 8.7 2.2 2.0 1 1 0 1 1 1 0 Up-regulated During Septation Atg14 PF10186.4 gi|284162055|ref|YP_003400678.1| - 0.37 9.6 3.6 0.38 9.6 2.5 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF1192 PF06698.6 gi|284162055|ref|YP_003400678.1| - 0.48 10.2 4.2 0.43 10.4 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) DASH_Duo1 PF08651.5 gi|284162055|ref|YP_003400678.1| - 0.51 9.9 4.2 1.7 8.2 0.7 2.3 1 1 1 2 2 2 0 DASH complex subunit Duo1 SlyX PF04102.7 gi|284162055|ref|YP_003400678.1| - 0.6 10.5 2.4 5 7.5 0.2 2.3 1 1 1 2 2 2 0 SlyX GCIP PF13324.1 gi|284162055|ref|YP_003400678.1| - 0.65 9.1 4.1 0.92 8.6 2.8 1.4 1 1 0 1 1 1 0 Grap2 and cyclin-D-interacting ORF6C PF10552.4 gi|284162055|ref|YP_003400678.1| - 0.66 9.7 7.3 0.48 10.1 1.8 2.2 1 1 0 2 2 2 0 ORF6C domain TMPIT PF07851.8 gi|284162055|ref|YP_003400678.1| - 0.71 8.8 3.0 0.73 8.8 2.1 1.0 1 0 0 1 1 1 0 TMPIT-like protein DUF972 PF06156.8 gi|284162055|ref|YP_003400678.1| - 0.74 10.1 4.6 3.2 8.1 3.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF972) DivIVA PF05103.8 gi|284162055|ref|YP_003400678.1| - 0.78 9.7 6.5 1.6 8.7 1.4 2.1 1 1 1 2 2 2 0 DivIVA protein AAA_23 PF13476.1 gi|284162055|ref|YP_003400678.1| - 0.94 9.7 6.4 1.1 9.5 4.5 1.2 1 0 0 1 1 1 0 AAA domain Nsp1_C PF05064.8 gi|284162055|ref|YP_003400678.1| - 1 9.0 5.1 0.78 9.4 1.2 1.9 1 1 1 2 2 2 0 Nsp1-like C-terminal region Vac_Fusion PF02346.11 gi|284162055|ref|YP_003400678.1| - 1.1 8.7 6.2 1.2 8.6 2.6 2.1 1 1 2 3 3 3 0 Chordopoxvirus fusion protein HSCB_C PF07743.8 gi|284162055|ref|YP_003400678.1| - 1.1 9.7 4.0 4.4 7.8 0.8 2.2 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain Matrilin_ccoil PF10393.4 gi|284162055|ref|YP_003400678.1| - 1.1 8.6 7.4 0.65 9.3 1.6 2.5 1 1 2 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Bap31 PF05529.7 gi|284162055|ref|YP_003400678.1| - 1.3 8.4 4.5 1.6 8.1 3.1 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DUF16 PF01519.11 gi|284162055|ref|YP_003400678.1| - 1.4 9.1 6.9 0.6 10.3 2.1 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF16 Microtub_assoc PF07989.6 gi|284162055|ref|YP_003400678.1| - 1.9 8.3 7.0 4.1 7.2 4.4 1.9 1 1 1 2 2 2 0 Microtubule associated bZIP_1 PF00170.16 gi|284162055|ref|YP_003400678.1| - 2.1 8.3 7.4 0.72 9.8 2.0 2.1 1 1 1 2 2 2 0 bZIP transcription factor ACCA PF03255.9 gi|284162055|ref|YP_003400678.1| - 2.4 7.7 5.0 2.2 7.8 1.6 1.8 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Prefoldin PF02996.12 gi|284162055|ref|YP_003400678.1| - 2.4 7.8 7.1 0.73 9.4 1.2 2.4 1 1 2 3 3 3 0 Prefoldin subunit YvrJ PF12841.2 gi|284162055|ref|YP_003400678.1| - 2.7 7.3 5.8 2.2 7.6 0.2 2.8 3 1 0 3 3 2 0 YvrJ protein family ETC_C1_NDUFA5 PF04716.9 gi|284162055|ref|YP_003400678.1| - 3.3 7.3 6.9 2.3 7.7 0.3 2.5 2 1 0 2 2 2 0 ETC complex I subunit conserved region CCDC-167 PF15188.1 gi|284162055|ref|YP_003400678.1| - 3.8 7.5 8.0 20 5.1 5.5 2.3 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 Syntaxin PF00804.20 gi|284162055|ref|YP_003400678.1| - 4.3 7.5 9.4 1.1e+02 3.0 6.5 2.2 1 1 0 1 1 1 0 Syntaxin DUF3901 PF13040.1 gi|284162055|ref|YP_003400678.1| - 5.8 6.2 8.1 1.3 8.3 0.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3901) Trigger_C PF05698.9 gi|284162056|ref|YP_003400679.1| - 0.0038 17.0 0.8 0.0038 17.0 0.5 1.6 2 0 0 2 2 2 1 Bacterial trigger factor protein (TF) C-terminus LemA PF04011.7 gi|284162056|ref|YP_003400679.1| - 0.089 11.8 0.1 0.13 11.3 0.1 1.2 1 0 0 1 1 1 0 LemA family DUF4287 PF14117.1 gi|284162056|ref|YP_003400679.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) Rotamase PF00639.16 gi|284162056|ref|YP_003400679.1| - 0.14 12.9 0.1 0.17 12.6 0.0 1.2 1 0 0 1 1 1 0 PPIC-type PPIASE domain DUF29 PF01724.11 gi|284162056|ref|YP_003400679.1| - 0.44 10.3 4.6 7.1 6.4 0.7 2.1 1 1 1 2 2 2 0 Domain of unknown function DUF29 Kri1 PF05178.7 gi|284162056|ref|YP_003400679.1| - 0.48 10.7 5.0 0.2 11.9 1.9 1.7 1 1 0 1 1 1 0 KRI1-like family MerR-DNA-bind PF09278.6 gi|284162056|ref|YP_003400679.1| - 0.53 10.7 2.7 0.34 11.3 0.5 1.7 2 0 0 2 2 2 0 MerR, DNA binding DUF919 PF06034.6 gi|284162056|ref|YP_003400679.1| - 0.55 9.8 8.7 0.15 11.7 2.9 2.0 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) HJURP_C PF12347.3 gi|284162056|ref|YP_003400679.1| - 0.7 9.5 6.0 0.075 12.6 1.1 1.6 2 0 0 2 2 2 0 Holliday junction regulator protein family C-terminal repeat DUF4546 PF15079.1 gi|284162056|ref|YP_003400679.1| - 6 5.9 9.3 7.8 5.5 6.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4546) DMPK_coil PF08826.5 gi|284162056|ref|YP_003400679.1| - 7.2 6.5 7.9 2.1 8.3 0.3 2.7 3 0 0 3 3 3 0 DMPK coiled coil domain like Col_cuticle_N PF01484.12 gi|284162057|ref|YP_003400680.1| - 0.11 12.2 1.1 0.11 12.2 0.8 1.5 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain Prim-Pol PF09250.6 gi|284162058|ref|YP_003400681.1| - 2e-14 53.8 0.0 4.6e-14 52.7 0.0 1.6 2 0 0 2 2 2 1 Bifunctional DNA primase/polymerase, N-terminal Metallophos_3 PF14582.1 gi|284162058|ref|YP_003400681.1| - 0.00037 19.7 0.0 0.00053 19.2 0.0 1.2 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily RHH_1 PF01402.16 gi|284162059|ref|YP_003400682.1| - 0.03 14.2 0.2 0.23 11.3 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family HTH_24 PF13412.1 gi|284162060|ref|YP_003400683.1| - 1.5e-05 24.2 0.0 2.9e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|284162060|ref|YP_003400683.1| - 4.2e-05 23.5 0.0 8.3e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|284162060|ref|YP_003400683.1| - 0.00016 21.2 0.1 0.00036 20.1 0.1 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|284162060|ref|YP_003400683.1| - 0.0003 20.3 0.0 0.00049 19.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|284162060|ref|YP_003400683.1| - 0.0079 16.4 0.1 0.014 15.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|284162060|ref|YP_003400683.1| - 0.017 14.8 0.1 0.045 13.5 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|284162060|ref|YP_003400683.1| - 0.022 14.4 0.1 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|284162060|ref|YP_003400683.1| - 0.041 13.8 0.3 0.093 12.7 0.2 1.6 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_45 PF14947.1 gi|284162060|ref|YP_003400683.1| - 0.048 13.4 1.3 0.18 11.6 0.2 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix MarR PF01047.17 gi|284162060|ref|YP_003400683.1| - 0.049 13.3 0.4 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 MarR family Phage_pRha PF09669.5 gi|284162060|ref|YP_003400683.1| - 0.57 10.5 3.1 0.57 10.5 0.3 2.4 2 1 0 2 2 2 0 Phage regulatory protein Rha (Phage_pRha) Ribosomal_L18_c PF14204.1 gi|284162060|ref|YP_003400683.1| - 0.66 10.5 5.2 0.51 10.9 1.0 2.3 2 0 0 2 2 2 0 Ribosomal L18 C-terminal region Radical_SAM PF04055.16 gi|284162061|ref|YP_003400684.1| - 4.6e-13 49.6 0.3 1.2e-12 48.2 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.2 gi|284162061|ref|YP_003400684.1| - 1.7e-09 37.4 0.0 6e-09 35.7 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|284162061|ref|YP_003400684.1| - 0.00099 18.6 0.1 0.0077 15.8 0.1 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix motif DUF655 PF04919.7 gi|284162061|ref|YP_003400684.1| - 0.0022 17.7 0.4 0.041 13.6 0.0 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF655) PsbU PF06514.6 gi|284162061|ref|YP_003400684.1| - 0.019 14.7 0.0 0.05 13.4 0.0 1.7 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.1 gi|284162061|ref|YP_003400684.1| - 0.028 14.5 0.0 0.16 12.1 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_6 PF14579.1 gi|284162061|ref|YP_003400684.1| - 0.13 12.3 0.0 0.43 10.6 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif UBN_AB PF14075.1 gi|284162062|ref|YP_003400685.1| - 0.056 13.1 2.2 0.092 12.4 1.6 1.3 1 0 0 1 1 1 0 Ubinuclein conserved middle domain CxxCxxCC PF03692.10 gi|284162062|ref|YP_003400685.1| - 0.084 13.3 4.7 0.17 12.3 3.2 1.6 1 0 0 1 1 1 0 Putative zinc- or iron-chelating domain RNA_pol_Rpb6 PF01192.17 gi|284162062|ref|YP_003400685.1| - 0.1 12.3 0.9 1.6 8.5 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase Rpb6 Nol1_Nop2_Fmu_2 PF13636.1 gi|284162063|ref|YP_003400686.1| - 2.3e-20 72.5 0.0 3.1e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis EF1_GNE PF00736.14 gi|284162064|ref|YP_003400687.1| - 4.8e-21 74.2 3.4 5e-21 74.1 2.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|284162065|ref|YP_003400688.1| - 1.5e-13 50.5 21.9 4.8e-08 32.9 5.6 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|284162065|ref|YP_003400688.1| - 0.002 17.9 10.2 0.46 10.3 3.5 2.3 1 1 1 2 2 2 2 Double zinc ribbon zf-Mss51 PF13824.1 gi|284162065|ref|YP_003400688.1| - 0.0096 15.7 10.4 0.092 12.6 2.8 2.1 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 C1_1 PF00130.17 gi|284162065|ref|YP_003400688.1| - 0.011 15.4 6.5 0.26 11.0 0.1 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.6 gi|284162065|ref|YP_003400688.1| - 0.013 15.1 4.6 0.013 15.1 3.2 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2039 PF10217.4 gi|284162065|ref|YP_003400688.1| - 0.024 14.6 3.1 0.024 14.6 2.2 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) PolC_DP2 PF03833.8 gi|284162065|ref|YP_003400688.1| - 0.032 11.9 6.0 0.032 11.9 4.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C3HC4_2 PF13923.1 gi|284162065|ref|YP_003400688.1| - 0.039 13.9 10.0 0.069 13.1 6.9 1.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-MYND PF01753.13 gi|284162065|ref|YP_003400688.1| - 0.057 13.3 5.5 0.65 9.9 4.0 2.1 1 1 0 1 1 1 0 MYND finger zf-Sec23_Sec24 PF04810.10 gi|284162065|ref|YP_003400688.1| - 0.059 12.9 1.3 0.059 12.9 0.9 3.4 2 1 2 4 4 4 0 Sec23/Sec24 zinc finger zf-RING_5 PF14634.1 gi|284162065|ref|YP_003400688.1| - 0.15 11.7 10.6 1.9 8.3 2.1 2.3 2 1 0 2 2 2 0 zinc-RING finger domain zf-C3HC4_3 PF13920.1 gi|284162065|ref|YP_003400688.1| - 0.28 10.8 11.4 29 4.4 7.9 2.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-B_box PF00643.19 gi|284162065|ref|YP_003400688.1| - 0.32 10.9 9.5 0.86 9.5 3.7 2.6 2 1 0 2 2 2 0 B-box zinc finger zf-H2C2_2 PF13465.1 gi|284162065|ref|YP_003400688.1| - 0.34 11.2 0.9 0.34 11.2 0.6 3.6 2 1 2 4 4 4 0 Zinc-finger double domain C1_3 PF07649.7 gi|284162065|ref|YP_003400688.1| - 0.46 10.5 15.1 3 7.9 6.6 3.1 1 1 1 2 2 2 0 C1-like domain DNA_ligase_ZBD PF03119.11 gi|284162065|ref|YP_003400688.1| - 0.51 10.0 0.4 0.51 10.0 0.3 3.2 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-AN1 PF01428.11 gi|284162065|ref|YP_003400688.1| - 0.97 9.3 12.4 0.97 9.3 2.7 2.7 1 1 2 3 3 3 0 AN1-like Zinc finger zinc_ribbon_4 PF13717.1 gi|284162065|ref|YP_003400688.1| - 1.2 8.8 14.0 4.1 7.1 0.3 3.5 2 1 1 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|284162065|ref|YP_003400688.1| - 1.2 8.8 12.8 47 3.7 8.9 3.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-HIT PF04438.11 gi|284162065|ref|YP_003400688.1| - 1.7 8.3 21.0 9.3 6.0 7.0 3.4 2 1 1 3 3 3 0 HIT zinc finger DUF1272 PF06906.6 gi|284162065|ref|YP_003400688.1| - 1.8 8.4 11.6 4 7.3 8.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C2H2 PF00096.21 gi|284162065|ref|YP_003400688.1| - 2 8.9 17.3 8.2 6.9 0.5 3.8 4 0 0 4 4 4 0 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.1 gi|284162065|ref|YP_003400688.1| - 2.3 7.8 14.1 6.2 6.4 0.3 3.5 2 1 1 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284162065|ref|YP_003400688.1| - 2.6 7.3 18.6 0.24 10.6 1.6 3.5 2 1 2 4 4 4 0 zinc-ribbon domain zf-nanos PF05741.8 gi|284162065|ref|YP_003400688.1| - 2.7 8.0 9.7 5.4 7.0 1.0 2.8 1 1 1 2 2 2 0 Nanos RNA binding domain Tnp_zf-ribbon_2 PF13842.1 gi|284162065|ref|YP_003400688.1| - 2.7 8.4 15.5 18 5.8 10.8 2.2 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Zn_Tnp_IS91 PF14319.1 gi|284162065|ref|YP_003400688.1| - 3.1 7.3 6.2 3.8 7.0 4.3 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2296 PF10058.4 gi|284162065|ref|YP_003400688.1| - 3.3 7.5 16.3 4.6 7.0 0.3 3.5 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) C1_4 PF07975.7 gi|284162065|ref|YP_003400688.1| - 4.3 7.4 10.9 1.4 9.0 3.2 2.5 1 1 1 2 2 2 0 TFIIH C1-like domain TFIIS_C PF01096.13 gi|284162065|ref|YP_003400688.1| - 4.6 6.9 18.1 7 6.3 0.2 4.0 3 1 1 4 4 4 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|284162065|ref|YP_003400688.1| - 4.8 7.2 18.9 1.2e+02 2.7 10.6 3.9 2 1 0 2 2 2 0 Zinc ribbon domain zf-UBR PF02207.15 gi|284162065|ref|YP_003400688.1| - 6 6.6 11.1 44 3.8 7.7 2.1 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) zf-C2H2_6 PF13912.1 gi|284162065|ref|YP_003400688.1| - 8.1 6.5 14.2 12 5.9 0.7 3.7 4 0 0 4 4 4 0 C2H2-type zinc finger DUF2226 PF09987.4 gi|284162067|ref|YP_003400690.1| - 0.057 12.5 3.2 0.063 12.3 2.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) KNOX1 PF03790.8 gi|284162067|ref|YP_003400690.1| - 0.097 12.0 0.0 0.21 10.9 0.0 1.6 1 0 0 1 1 1 0 KNOX1 domain HTH_34 PF13601.1 gi|284162068|ref|YP_003400691.1| - 0.00036 20.5 0.2 0.00047 20.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|284162068|ref|YP_003400691.1| - 0.029 14.2 0.1 0.046 13.6 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Abp2 PF09441.5 gi|284162068|ref|YP_003400691.1| - 0.097 12.5 0.0 0.11 12.3 0.0 1.0 1 0 0 1 1 1 0 ARS binding protein 2 TFIIE_alpha PF02002.12 gi|284162068|ref|YP_003400691.1| - 0.12 11.9 0.7 0.14 11.6 0.5 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2874 PF11396.3 gi|284162068|ref|YP_003400691.1| - 0.23 11.4 0.7 0.38 10.7 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) gpUL132 PF11359.3 gi|284162070|ref|YP_003400693.1| - 4.1 6.6 11.1 66 2.7 7.6 2.2 2 0 0 2 2 2 0 Glycoprotein UL132 AA_kinase PF00696.23 gi|284162071|ref|YP_003400694.1| - 2.1e-30 106.0 0.7 2.7e-30 105.6 0.5 1.1 1 0 0 1 1 1 1 Amino acid kinase family IgG_binding_B PF01378.12 gi|284162071|ref|YP_003400694.1| - 0.015 15.1 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 B domain Pyr_redox PF00070.22 gi|284162071|ref|YP_003400694.1| - 0.056 13.8 0.1 0.14 12.5 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FtsJ PF01728.14 gi|284162072|ref|YP_003400695.1| - 6.2e-58 195.7 0.0 7.1e-58 195.5 0.0 1.0 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.1 gi|284162072|ref|YP_003400695.1| - 1.9e-07 30.9 0.0 1.1e-06 28.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284162072|ref|YP_003400695.1| - 2e-07 31.5 0.1 0.029 14.9 0.0 2.2 1 1 1 2 2 2 2 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284162072|ref|YP_003400695.1| - 2.3e-06 27.2 0.0 8.5e-05 22.1 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284162072|ref|YP_003400695.1| - 0.014 15.8 0.0 0.048 14.1 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|284162072|ref|YP_003400695.1| - 0.017 15.1 0.0 0.067 13.2 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|284162072|ref|YP_003400695.1| - 0.027 14.4 0.1 0.06 13.3 0.0 1.5 2 0 0 2 2 2 0 TrkA-N domain Met_10 PF02475.11 gi|284162072|ref|YP_003400695.1| - 0.029 13.9 0.0 0.058 12.9 0.0 1.3 1 1 0 1 1 1 0 Met-10+ like-protein Methyltransf_PK PF05891.7 gi|284162072|ref|YP_003400695.1| - 0.098 11.9 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase LpxC PF03331.8 gi|284162072|ref|YP_003400695.1| - 0.14 11.0 0.0 0.55 9.1 0.0 1.8 1 1 1 2 2 2 0 UDP-3-O-acyl N-acetylglycosamine deacetylase Lactamase_B PF00753.22 gi|284162073|ref|YP_003400696.1| - 5.5e-09 35.9 0.7 1e-08 35.0 0.5 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|284162073|ref|YP_003400696.1| - 4.8e-06 26.2 0.0 6.1e-06 25.9 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Ribosomal_L40e PF01020.12 gi|284162074|ref|YP_003400697.1| - 2.1e-05 24.0 6.2 2.8e-05 23.6 4.3 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DNA_RNApol_7kD PF03604.8 gi|284162074|ref|YP_003400697.1| - 0.00095 18.5 4.9 0.0015 17.9 3.4 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|284162074|ref|YP_003400697.1| - 0.00098 18.9 0.9 0.0011 18.7 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-DHHC PF01529.15 gi|284162074|ref|YP_003400697.1| - 0.0026 17.1 0.9 0.0029 17.0 0.6 1.1 1 0 0 1 1 1 1 DHHC palmitoyltransferase zinc_ribbon_2 PF13240.1 gi|284162074|ref|YP_003400697.1| - 0.0079 15.6 0.5 0.012 15.1 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284162074|ref|YP_003400697.1| - 0.06 12.5 1.1 0.086 12.0 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain FYVE PF01363.16 gi|284162074|ref|YP_003400697.1| - 0.17 11.8 2.7 0.19 11.6 1.8 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-RanBP PF00641.13 gi|284162074|ref|YP_003400697.1| - 0.2 10.8 2.3 0.3 10.2 1.6 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others UPF0547 PF10571.4 gi|284162074|ref|YP_003400697.1| - 0.75 9.5 3.4 3.3 7.5 2.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|284162074|ref|YP_003400697.1| - 0.94 9.2 4.7 9.7 5.9 3.4 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit ABC_tran PF00005.22 gi|284162075|ref|YP_003400698.1| - 4.4e-28 98.2 0.0 6.4e-28 97.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284162075|ref|YP_003400698.1| - 1.9e-12 47.7 0.3 2.3e-06 27.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|284162075|ref|YP_003400698.1| - 0.00047 19.6 0.0 0.00083 18.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|284162075|ref|YP_003400698.1| - 0.04 12.9 0.0 0.6 9.0 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain DUF2813 PF11398.3 gi|284162075|ref|YP_003400698.1| - 0.048 12.7 0.0 0.13 11.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) Zeta_toxin PF06414.7 gi|284162075|ref|YP_003400698.1| - 0.096 11.7 0.0 0.2 10.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|284162075|ref|YP_003400698.1| - 0.14 12.5 0.8 0.14 12.5 0.5 1.4 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|284162075|ref|YP_003400698.1| - 0.33 10.6 1.7 0.83 9.3 0.2 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SBP_bac_3 PF00497.15 gi|284162077|ref|YP_003400700.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 UPF0182 PF03699.8 gi|284162078|ref|YP_003400701.1| - 4.9e-257 854.8 27.3 1.5e-256 853.1 18.9 1.7 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0182) MFS_1 PF07690.11 gi|284162079|ref|YP_003400702.1| - 3e-45 154.4 44.4 9.9e-32 110.0 11.2 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|284162079|ref|YP_003400702.1| - 5.9e-07 28.4 29.0 0.00017 20.3 6.8 2.3 2 1 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.15 gi|284162079|ref|YP_003400702.1| - 0.044 11.8 16.8 0.56 8.1 2.0 3.2 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family MFS_2 PF13347.1 gi|284162079|ref|YP_003400702.1| - 6.9 4.9 30.2 0.021 13.2 4.9 3.0 2 1 1 3 3 3 0 MFS/sugar transport protein Carboxyl_trans PF01039.17 gi|284162080|ref|YP_003400703.1| - 4.8e-68 229.6 0.0 4.6e-66 223.1 0.0 2.1 1 1 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|284162080|ref|YP_003400703.1| - 0.0034 16.6 0.0 0.0049 16.1 0.0 1.2 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) SIP PF04954.8 gi|284162081|ref|YP_003400704.1| - 0.04 14.2 0.0 0.044 14.1 0.0 1.0 1 0 0 1 1 1 0 Siderophore-interacting protein DUF1048 PF06304.6 gi|284162082|ref|YP_003400705.1| - 0.044 14.1 0.0 0.044 14.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1048) DeoC PF01791.4 gi|284162084|ref|YP_003400707.1| - 4.8e-48 163.5 1.5 5.6e-48 163.2 1.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.9 gi|284162084|ref|YP_003400707.1| - 1.5e-05 24.1 1.8 0.00015 20.9 0.2 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|284162084|ref|YP_003400707.1| - 0.00058 19.0 0.3 0.1 11.7 0.2 2.5 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI DUF561 PF04481.7 gi|284162084|ref|YP_003400707.1| - 0.00086 18.3 0.4 0.0019 17.1 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF561) AP_endonuc_2 PF01261.19 gi|284162084|ref|YP_003400707.1| - 0.0044 16.3 0.0 0.015 14.6 0.0 2.0 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel NMO PF03060.10 gi|284162084|ref|YP_003400707.1| - 0.0047 16.1 0.7 0.009 15.1 0.2 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase DHquinase_I PF01487.10 gi|284162084|ref|YP_003400707.1| - 0.081 12.5 0.0 0.17 11.5 0.0 1.6 1 1 0 1 1 1 0 Type I 3-dehydroquinase DHQS PF01959.11 gi|284162085|ref|YP_003400708.1| - 1.4e-123 412.0 6.4 3.3e-123 410.8 4.4 1.5 1 1 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) OapA PF04225.7 gi|284162085|ref|YP_003400708.1| - 0.0087 15.9 0.0 2.1 8.2 0.0 2.5 2 0 0 2 2 2 2 Opacity-associated protein A LysM-like domain RNA_pol_Rpb5_C PF01191.14 gi|284162086|ref|YP_003400709.1| - 1.7e-31 107.6 0.5 2.4e-31 107.1 0.4 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3251 PF11622.3 gi|284162086|ref|YP_003400709.1| - 0.077 12.4 0.0 0.09 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3251) RNA_pol_Rpb2_1 PF04563.10 gi|284162087|ref|YP_003400710.1| - 3e-48 163.4 0.0 3.4e-46 156.7 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|284162087|ref|YP_003400710.1| - 9.3e-32 109.9 0.0 1.4e-31 109.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|284162087|ref|YP_003400710.1| - 2.4e-25 88.0 0.0 4e-25 87.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.23 gi|284162088|ref|YP_003400711.1| - 1.1e-128 429.3 0.0 1.4e-128 428.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|284162088|ref|YP_003400711.1| - 2e-28 98.4 0.0 4.4e-28 97.3 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|284162088|ref|YP_003400711.1| - 2.1e-26 91.5 0.3 6.5e-26 89.9 0.1 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|284162088|ref|YP_003400711.1| - 9.8e-15 54.2 0.9 2.1e-14 53.1 0.7 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-UBP PF02148.14 gi|284162088|ref|YP_003400711.1| - 0.0017 18.4 1.5 0.0044 17.1 1.0 1.6 1 0 0 1 1 1 1 Zn-finger in ubiquitin-hydrolases and other protein RNA_pol_Rpb1_1 PF04997.7 gi|284162089|ref|YP_003400712.1| - 1.4e-89 300.7 0.0 1.3e-86 290.9 0.0 2.2 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|284162089|ref|YP_003400712.1| - 4.1e-66 222.0 0.0 6.8e-66 221.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|284162089|ref|YP_003400712.1| - 5.3e-40 136.7 0.0 9e-40 135.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|284162089|ref|YP_003400712.1| - 3.2e-31 107.2 0.0 6.6e-31 106.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|284162089|ref|YP_003400712.1| - 2.7e-28 99.0 0.1 5.5e-28 98.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.1 gi|284162089|ref|YP_003400712.1| - 0.013 14.6 1.3 0.19 10.9 0.2 2.7 2 0 0 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|284162089|ref|YP_003400712.1| - 0.26 11.1 2.9 1.9 8.3 0.1 3.3 3 0 0 3 3 3 0 Putative zinc ribbon domain DUF35_N PF12172.3 gi|284162089|ref|YP_003400712.1| - 2.4 8.1 6.7 27 4.8 0.0 3.6 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNA_pol_Rpb1_5 PF04998.12 gi|284162090|ref|YP_003400713.1| - 1.1e-59 202.0 2.3 1.6e-59 201.4 1.6 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 ExbD PF02472.11 gi|284162090|ref|YP_003400713.1| - 0.00045 20.2 2.5 0.0011 18.9 0.5 2.3 2 0 0 2 2 2 1 Biopolymer transport protein ExbD/TolR DUF4355 PF14265.1 gi|284162090|ref|YP_003400713.1| - 0.97 9.3 0.0 0.97 9.3 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) Ribosomal_L7Ae PF01248.21 gi|284162091|ref|YP_003400714.1| - 4.1e-18 64.6 0.7 4.7e-18 64.4 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family ATP-synt_F PF01990.12 gi|284162091|ref|YP_003400714.1| - 0.013 15.9 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit DUF116 PF01976.12 gi|284162091|ref|YP_003400714.1| - 0.076 12.4 0.0 0.076 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF116 KH_2 PF07650.12 gi|284162092|ref|YP_003400715.1| - 1.3e-21 75.9 11.6 4.2e-16 58.2 3.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|284162092|ref|YP_003400715.1| - 4.1e-11 42.5 2.7 4.1e-11 42.5 1.9 2.5 1 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|284162092|ref|YP_003400715.1| - 1.1e-08 34.5 2.7 1.6e-05 24.4 0.3 2.4 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|284162092|ref|YP_003400715.1| - 2.7e-06 26.9 14.0 5.5e-05 22.7 0.4 2.6 1 1 1 2 2 2 2 KH domain KH_3 PF13014.1 gi|284162092|ref|YP_003400715.1| - 0.022 14.4 0.6 0.022 14.4 0.4 3.2 3 1 0 3 3 3 0 KH domain AAA_4 PF04326.9 gi|284162092|ref|YP_003400715.1| - 0.11 12.6 1.4 0.17 12.0 0.9 1.2 1 0 0 1 1 1 0 Divergent AAA domain Ribosom_S12_S23 PF00164.20 gi|284162093|ref|YP_003400716.1| - 4.5e-43 145.5 0.1 5.2e-43 145.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|284162094|ref|YP_003400717.1| - 1.4e-44 151.2 1.3 1.7e-44 150.9 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|284162095|ref|YP_003400718.1| - 1e-62 210.8 0.1 1.7e-62 210.2 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|284162095|ref|YP_003400718.1| - 2e-31 108.0 0.1 4.8e-31 106.8 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|284162095|ref|YP_003400718.1| - 2.3e-26 91.4 1.0 4.1e-26 90.6 0.3 1.8 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|284162095|ref|YP_003400718.1| - 7.2e-25 86.6 0.1 2.2e-24 85.1 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|284162095|ref|YP_003400718.1| - 7.8e-17 61.1 0.1 2.8e-16 59.4 0.1 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|284162095|ref|YP_003400718.1| - 3.1e-05 23.8 0.0 7.7e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|284162095|ref|YP_003400718.1| - 0.015 14.7 0.0 0.029 13.7 0.0 1.4 1 0 0 1 1 1 0 Ras family AF2331-like PF14556.1 gi|284162096|ref|YP_003400719.1| - 4e-46 155.2 8.3 4.4e-46 155.1 5.7 1.0 1 0 0 1 1 1 1 AF2331-like Lip_prot_lig_C PF10437.4 gi|284162096|ref|YP_003400719.1| - 0.098 12.3 0.3 0.15 11.7 0.2 1.4 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus Thioredoxin_2 PF13098.1 gi|284162097|ref|YP_003400720.1| - 2.3e-10 40.6 0.3 4e-09 36.6 0.2 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|284162097|ref|YP_003400720.1| - 3.8e-10 39.3 0.0 4.8e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|284162097|ref|YP_003400720.1| - 1.9e-08 34.0 0.1 2.6e-08 33.5 0.1 1.3 1 1 0 1 1 1 1 Thioredoxin domain KaiB PF07689.7 gi|284162097|ref|YP_003400720.1| - 1e-07 31.3 0.0 1.4e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 KaiB domain Glutaredoxin PF00462.19 gi|284162097|ref|YP_003400720.1| - 4.6e-06 26.5 0.1 6.9e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 Glutaredoxin HyaE PF07449.6 gi|284162097|ref|YP_003400720.1| - 6.7e-06 25.9 0.0 7.9e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_4 PF13462.1 gi|284162097|ref|YP_003400720.1| - 2e-05 24.6 0.4 0.021 14.8 0.1 2.1 1 1 1 2 2 2 2 Thioredoxin TraF PF13728.1 gi|284162097|ref|YP_003400720.1| - 4.1e-05 23.1 0.0 5.8e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein DUF836 PF05768.9 gi|284162097|ref|YP_003400720.1| - 0.00011 22.3 0.0 0.00012 22.2 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.1 gi|284162097|ref|YP_003400720.1| - 0.00042 20.3 0.7 0.14 12.3 0.1 2.2 1 1 1 2 2 2 2 Thioredoxin-like TrbC_Ftype PF09673.5 gi|284162097|ref|YP_003400720.1| - 0.0019 17.7 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein Thioredoxin_9 PF14595.1 gi|284162097|ref|YP_003400720.1| - 0.003 17.1 0.0 0.0033 16.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|284162097|ref|YP_003400720.1| - 0.0085 16.0 0.0 0.014 15.3 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like GST_N_3 PF13417.1 gi|284162097|ref|YP_003400720.1| - 0.033 14.3 0.0 0.049 13.8 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain DSBA PF01323.15 gi|284162097|ref|YP_003400720.1| - 0.14 11.6 0.4 3.2 7.2 0.1 2.0 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DUF953 PF06110.6 gi|284162097|ref|YP_003400720.1| - 0.15 11.4 0.5 2.2 7.7 0.1 2.3 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF953) Trm56 PF01994.11 gi|284162098|ref|YP_003400721.1| - 6.4e-46 155.0 0.0 8.3e-46 154.6 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.14 gi|284162098|ref|YP_003400721.1| - 0.032 14.1 0.0 0.043 13.6 0.0 1.2 1 0 0 1 1 1 0 SpoU rRNA Methylase family PcrB PF01884.12 gi|284162099|ref|YP_003400722.1| - 2.1e-61 207.1 0.1 2.5e-61 206.8 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|284162099|ref|YP_003400722.1| - 9.8e-10 38.0 0.0 5.2e-08 32.4 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|284162099|ref|YP_003400722.1| - 1.9e-09 36.9 0.3 1.1e-06 27.8 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|284162099|ref|YP_003400722.1| - 1.4e-07 30.9 1.1 0.00012 21.3 0.0 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.20 gi|284162099|ref|YP_003400722.1| - 3.5e-07 29.4 0.0 0.00023 20.1 0.0 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|284162099|ref|YP_003400722.1| - 3e-06 26.3 1.2 0.00023 20.2 0.0 2.5 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.16 gi|284162099|ref|YP_003400722.1| - 5.3e-06 25.5 0.0 9.9e-06 24.7 0.0 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|284162099|ref|YP_003400722.1| - 0.00018 20.4 0.0 0.0081 15.0 0.1 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|284162099|ref|YP_003400722.1| - 0.00028 20.0 0.2 0.00083 18.5 0.0 1.9 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI Trp_syntA PF00290.15 gi|284162099|ref|YP_003400722.1| - 0.00066 18.2 0.4 0.0067 14.9 0.1 2.4 3 0 0 3 3 3 1 Tryptophan synthase alpha chain Pterin_bind PF00809.17 gi|284162099|ref|YP_003400722.1| - 0.0047 16.3 0.8 2.4 7.4 0.1 2.2 2 0 0 2 2 2 2 Pterin binding enzyme FMN_dh PF01070.13 gi|284162099|ref|YP_003400722.1| - 0.0051 15.6 0.6 0.014 14.2 0.0 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase PEP_mutase PF13714.1 gi|284162099|ref|YP_003400722.1| - 0.023 13.9 0.0 0.54 9.4 0.0 2.2 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase IGPS PF00218.16 gi|284162099|ref|YP_003400722.1| - 0.049 12.6 0.0 0.2 10.7 0.0 1.8 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Epimerase PF01370.16 gi|284162100|ref|YP_003400723.1| - 1.8e-26 93.0 0.1 2.9e-26 92.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|284162100|ref|YP_003400723.1| - 4.5e-14 52.0 0.0 1e-13 50.8 0.0 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|284162100|ref|YP_003400723.1| - 9.9e-13 47.5 0.2 4.1e-11 42.2 0.0 2.1 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|284162100|ref|YP_003400723.1| - 3.5e-10 40.1 0.0 5.3e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|284162100|ref|YP_003400723.1| - 1.9e-09 36.6 0.2 1.9e-09 36.6 0.1 1.4 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Diphthamide_syn PF01866.12 gi|284162100|ref|YP_003400723.1| - 0.068 12.3 0.0 0.15 11.2 0.0 1.5 1 1 1 2 2 2 0 Putative diphthamide synthesis protein MCH PF02289.11 gi|284162101|ref|YP_003400724.1| - 8.7e-93 310.7 1.7 9.5e-93 310.6 1.2 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Aconitase_C PF00694.14 gi|284162102|ref|YP_003400725.1| - 4.9e-19 68.7 0.3 1.5e-17 63.9 0.2 2.1 1 1 0 1 1 1 1 Aconitase C-terminal domain DUF2190 PF09956.4 gi|284162102|ref|YP_003400725.1| - 0.034 13.9 0.0 0.11 12.3 0.0 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2190) GATase_2 PF00310.16 gi|284162103|ref|YP_003400726.1| - 1.8e-25 89.4 0.0 3.5e-21 75.3 0.0 2.8 2 1 1 3 3 3 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|284162103|ref|YP_003400726.1| - 1.1e-21 77.2 0.0 2.3e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|284162103|ref|YP_003400726.1| - 4.2e-21 74.9 0.0 7.9e-21 74.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|284162103|ref|YP_003400726.1| - 5.3e-12 45.5 0.3 1.3e-11 44.2 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|284162103|ref|YP_003400726.1| - 1.1e-06 27.5 0.0 2.8e-06 26.2 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|284162104|ref|YP_003400727.1| - 4.8e-23 80.7 13.7 5.5e-23 80.5 9.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DUF35_N PF12172.3 gi|284162104|ref|YP_003400727.1| - 0.00036 20.3 3.1 0.00053 19.8 2.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|284162104|ref|YP_003400727.1| - 0.0094 15.7 0.6 0.013 15.2 0.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon DUF2688 PF10892.3 gi|284162104|ref|YP_003400727.1| - 0.021 14.4 3.3 0.021 14.4 2.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) HypA PF01155.14 gi|284162104|ref|YP_003400727.1| - 0.057 13.1 0.5 0.065 12.9 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family FYVE_2 PF02318.11 gi|284162104|ref|YP_003400727.1| - 0.12 12.3 2.4 0.12 12.2 1.7 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-ribbon_3 PF13248.1 gi|284162104|ref|YP_003400727.1| - 0.22 10.8 6.9 1.3 8.3 4.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|284162104|ref|YP_003400727.1| - 0.23 11.2 2.0 0.35 10.6 1.4 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_6 PF14599.1 gi|284162104|ref|YP_003400727.1| - 0.83 9.4 4.4 0.66 9.8 2.5 1.4 1 1 0 1 1 1 0 Zinc-ribbon OrfB_Zn_ribbon PF07282.6 gi|284162104|ref|YP_003400727.1| - 2.8 7.6 6.5 2 8.1 3.6 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain LSM PF01423.17 gi|284162105|ref|YP_003400728.1| - 3.1e-22 77.8 0.6 3.5e-22 77.7 0.4 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|284162105|ref|YP_003400728.1| - 0.00013 21.8 0.1 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Gate PF07670.9 gi|284162106|ref|YP_003400729.1| - 3.8e-06 26.7 16.8 8.6e-06 25.6 2.6 2.8 2 2 0 2 2 2 2 Nucleoside recognition DUF373 PF04123.8 gi|284162106|ref|YP_003400729.1| - 1.1 8.2 16.5 0.92 8.4 4.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF373) Response_reg PF00072.19 gi|284162107|ref|YP_003400730.1| - 1.8e-23 82.6 2.4 2e-23 82.5 1.7 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Histidinol_dh PF00815.15 gi|284162108|ref|YP_003400731.1| - 2.3e-163 543.6 0.3 2.8e-163 543.3 0.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase tRNA-synt_2 PF00152.15 gi|284162109|ref|YP_003400732.1| - 1.7e-98 329.5 0.1 2.3e-98 329.0 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|284162109|ref|YP_003400732.1| - 1.7e-17 62.9 0.1 3e-17 62.2 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|284162109|ref|YP_003400732.1| - 8.2e-05 21.9 1.0 0.034 13.3 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) GHMP_kinases_N PF00288.21 gi|284162110|ref|YP_003400733.1| - 2.6e-18 65.8 0.2 8.7e-18 64.1 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|284162110|ref|YP_003400733.1| - 8.5e-12 45.1 0.1 2e-11 43.8 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|284162110|ref|YP_003400733.1| - 0.014 14.6 0.0 0.031 13.5 0.0 1.6 1 0 0 1 1 1 0 Galactokinase galactose-binding signature SpoVG PF04026.7 gi|284162111|ref|YP_003400734.1| - 2.1e-30 104.5 0.2 2.5e-30 104.3 0.1 1.0 1 0 0 1 1 1 1 SpoVG VIT1 PF01988.14 gi|284162112|ref|YP_003400735.1| - 6.1e-25 87.9 22.8 1.1e-22 80.6 15.8 2.0 1 1 0 1 1 1 1 VIT family HycI PF01750.13 gi|284162113|ref|YP_003400736.1| - 8.1e-28 96.5 0.1 1e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Aldo_ket_red PF00248.16 gi|284162114|ref|YP_003400737.1| - 7.4e-61 205.4 0.0 8.4e-61 205.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GP46 PF07409.7 gi|284162114|ref|YP_003400737.1| - 0.13 11.5 0.0 0.28 10.4 0.0 1.5 1 0 0 1 1 1 0 Phage protein GP46 Ni_hydr_CYTB PF01292.15 gi|284162115|ref|YP_003400738.1| - 3.2e-19 69.0 15.2 3.8e-19 68.7 10.5 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|284162115|ref|YP_003400738.1| - 8.5e-19 67.6 23.7 4.2e-18 65.3 16.5 1.8 1 1 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB DUF1352 PF07086.7 gi|284162115|ref|YP_003400738.1| - 1.3 8.5 6.4 6.7 6.2 1.8 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1352) DUF4405 PF14358.1 gi|284162115|ref|YP_003400738.1| - 2.8 8.1 19.9 1.3 9.1 3.8 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) NiFeSe_Hases PF00374.14 gi|284162116|ref|YP_003400739.1| - 3.7e-87 293.2 1.2 6.8e-55 186.7 0.0 3.2 3 0 0 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|284162117|ref|YP_003400740.1| - 2.2e-28 98.4 0.1 3.4e-28 97.8 0.1 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFe_hyd_SSU_C PF14720.1 gi|284162117|ref|YP_003400740.1| - 4.9e-25 87.3 10.9 2.9e-24 84.8 4.2 2.3 2 0 0 2 2 2 2 NiFe/NiFeSe hydrogenase small subunit C-terminal TAT_signal PF10518.4 gi|284162117|ref|YP_003400740.1| - 0.01 15.7 0.2 0.01 15.7 0.2 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PNP_UDP_1 PF01048.15 gi|284162118|ref|YP_003400741.1| - 6.2e-48 162.7 0.0 7.2e-48 162.6 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DNA_pol_B_thumb PF14791.1 gi|284162118|ref|YP_003400741.1| - 0.15 11.8 0.0 1.2 8.8 0.0 2.4 2 0 0 2 2 2 0 DNA polymerase beta thumb Pribosyltran PF00156.22 gi|284162119|ref|YP_003400742.1| - 1.3e-20 73.3 0.0 2.4e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|284162119|ref|YP_003400742.1| - 0.023 13.9 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PTS_2-RNA PF01885.11 gi|284162120|ref|YP_003400743.1| - 1.1e-41 142.2 0.0 1.3e-41 141.9 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family DUF531 PF04407.7 gi|284162121|ref|YP_003400744.1| - 1.4e-63 213.8 0.0 1.6e-63 213.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) Methyltrn_RNA_4 PF09936.4 gi|284162121|ref|YP_003400744.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.5 1 1 0 1 1 1 0 SAM-dependent RNA methyltransferase POR PF01558.13 gi|284162122|ref|YP_003400745.1| - 5e-43 146.9 0.2 5.8e-43 146.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase ABC_tran PF00005.22 gi|284162123|ref|YP_003400746.1| - 3.3e-32 111.6 0.0 5e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284162123|ref|YP_003400746.1| - 3.4e-12 46.9 0.2 3.2e-06 27.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284162123|ref|YP_003400746.1| - 2.2e-06 27.0 0.1 0.012 14.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|284162123|ref|YP_003400746.1| - 1.8e-05 24.7 0.3 3.9e-05 23.7 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|284162123|ref|YP_003400746.1| - 4e-05 23.0 0.0 7.4e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284162123|ref|YP_003400746.1| - 6.1e-05 23.4 0.0 7.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284162123|ref|YP_003400746.1| - 0.00044 19.4 0.0 0.09 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|284162123|ref|YP_003400746.1| - 0.0023 18.0 0.8 0.034 14.2 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|284162123|ref|YP_003400746.1| - 0.0027 17.6 0.0 0.28 11.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|284162123|ref|YP_003400746.1| - 0.0044 16.9 0.1 0.039 13.8 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit UPF0079 PF02367.12 gi|284162123|ref|YP_003400746.1| - 0.0086 15.7 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|284162123|ref|YP_003400746.1| - 0.014 14.5 0.0 0.023 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MutS_V PF00488.16 gi|284162123|ref|YP_003400746.1| - 0.016 14.5 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_10 PF12846.2 gi|284162123|ref|YP_003400746.1| - 0.032 13.6 0.0 0.099 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|284162123|ref|YP_003400746.1| - 0.034 14.3 0.0 0.55 10.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|284162123|ref|YP_003400746.1| - 0.039 13.0 0.0 0.067 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|284162123|ref|YP_003400746.1| - 0.042 13.5 0.6 0.27 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|284162123|ref|YP_003400746.1| - 0.043 13.2 0.0 0.095 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|284162123|ref|YP_003400746.1| - 0.049 13.0 0.1 0.16 11.4 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|284162123|ref|YP_003400746.1| - 0.075 12.7 0.1 0.23 11.0 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase AAA_30 PF13604.1 gi|284162123|ref|YP_003400746.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|284162123|ref|YP_003400746.1| - 0.13 11.0 0.3 0.22 10.2 0.0 1.4 2 0 0 2 2 2 0 ArgK protein DUF815 PF05673.8 gi|284162123|ref|YP_003400746.1| - 0.13 11.1 0.0 0.41 9.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) FecCD PF01032.13 gi|284162124|ref|YP_003400747.1| - 3.1e-93 312.0 40.6 3.8e-93 311.7 28.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|284162124|ref|YP_003400747.1| - 0.00021 20.6 23.7 0.00038 19.8 16.3 1.6 1 1 0 1 1 1 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|284162125|ref|YP_003400748.1| - 6.4e-41 140.0 0.6 8.7e-41 139.6 0.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TroA PF01297.12 gi|284162125|ref|YP_003400748.1| - 0.14 11.4 0.3 0.75 8.9 0.1 2.0 1 1 1 2 2 2 0 Periplasmic solute binding protein family Cupin_2 PF07883.6 gi|284162126|ref|YP_003400749.1| - 0.0013 18.2 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Cupin domain Methyltransf_2 PF00891.13 gi|284162127|ref|YP_003400750.1| - 2.3e-18 66.2 0.0 2.7e-17 62.7 0.0 2.0 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|284162127|ref|YP_003400750.1| - 3e-10 40.6 0.0 6.9e-10 39.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284162127|ref|YP_003400750.1| - 1.1e-07 31.7 0.0 1.7e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284162127|ref|YP_003400750.1| - 1.4e-06 27.9 0.1 3.4e-06 26.7 0.0 1.7 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284162127|ref|YP_003400750.1| - 2.6e-06 27.8 0.0 1.1e-05 25.7 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|284162127|ref|YP_003400750.1| - 0.00014 21.3 0.0 0.00054 19.4 0.0 1.9 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|284162127|ref|YP_003400750.1| - 0.00045 20.6 0.0 0.00095 19.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Rrf2 PF02082.15 gi|284162127|ref|YP_003400750.1| - 0.0086 16.1 0.1 0.022 14.8 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator HTH_45 PF14947.1 gi|284162127|ref|YP_003400750.1| - 0.019 14.7 0.3 0.072 12.9 0.0 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix Dimerisation PF08100.6 gi|284162127|ref|YP_003400750.1| - 0.035 13.9 0.1 0.18 11.6 0.0 2.3 2 0 0 2 2 2 0 Dimerisation domain TrmB PF01978.14 gi|284162127|ref|YP_003400750.1| - 0.071 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF3647 PF12363.3 gi|284162127|ref|YP_003400750.1| - 0.1 12.7 0.4 0.23 11.5 0.3 1.6 1 0 0 1 1 1 0 Phage protein GMP_synt_C PF00958.17 gi|284162129|ref|YP_003400752.1| - 4.8e-31 106.3 0.1 9.7e-31 105.3 0.1 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|284162129|ref|YP_003400752.1| - 1.5e-13 50.2 0.2 1e-12 47.5 0.1 2.0 1 1 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|284162129|ref|YP_003400752.1| - 9.2e-05 21.8 0.0 0.0024 17.1 0.0 2.3 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|284162129|ref|YP_003400752.1| - 0.00011 20.9 0.0 0.0089 14.6 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Arginosuc_synth PF00764.14 gi|284162129|ref|YP_003400752.1| - 0.00019 20.5 0.0 0.00033 19.8 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|284162129|ref|YP_003400752.1| - 0.00043 19.8 0.0 0.00074 19.0 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|284162129|ref|YP_003400752.1| - 0.00044 19.7 0.1 0.0025 17.2 0.1 2.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|284162129|ref|YP_003400752.1| - 0.0079 16.0 0.0 0.026 14.3 0.0 1.9 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|284162129|ref|YP_003400752.1| - 0.055 12.9 0.0 0.15 11.5 0.0 1.8 1 1 0 1 1 1 0 PP-loop family Peptidase_M54 PF07998.6 gi|284162130|ref|YP_003400753.1| - 1.7e-28 99.7 0.1 2.2e-28 99.3 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|284162130|ref|YP_003400753.1| - 0.00077 19.2 0.0 0.00083 19.1 0.0 1.2 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.3 gi|284162130|ref|YP_003400753.1| - 0.06 11.8 0.2 0.086 11.2 0.2 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M66 PF10462.4 gi|284162130|ref|YP_003400753.1| - 0.14 11.0 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 TatC PF00902.13 gi|284162131|ref|YP_003400754.1| - 4.1e-45 153.8 20.9 5.2e-45 153.4 14.5 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) TRAP_beta PF05753.9 gi|284162131|ref|YP_003400754.1| - 0.08 12.0 0.2 7.5 5.6 0.1 2.3 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) MannoseP_isomer PF01050.13 gi|284162132|ref|YP_003400755.1| - 9.9e-65 216.7 0.3 1.9e-64 215.8 0.2 1.5 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|284162132|ref|YP_003400755.1| - 2e-55 187.7 0.0 3.7e-55 186.9 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.6 gi|284162132|ref|YP_003400755.1| - 1.2e-13 50.3 0.0 3.1e-13 49.0 0.0 1.7 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|284162132|ref|YP_003400755.1| - 3.1e-08 33.8 0.0 6.5e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Cupin_3 PF05899.7 gi|284162132|ref|YP_003400755.1| - 0.00038 19.7 0.0 0.00099 18.4 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|284162132|ref|YP_003400755.1| - 0.0005 20.0 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 Mif2/CENP-C like AraC_binding PF02311.14 gi|284162132|ref|YP_003400755.1| - 0.0006 19.4 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 AraC-like ligand binding domain Glyco_transf_8 PF01501.15 gi|284162132|ref|YP_003400755.1| - 0.014 14.7 0.1 0.95 8.7 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase family 8 IspD PF01128.14 gi|284162132|ref|YP_003400755.1| - 0.036 13.5 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Cupin_1 PF00190.17 gi|284162132|ref|YP_003400755.1| - 0.089 12.2 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Cupin DUF377 PF04041.8 gi|284162133|ref|YP_003400756.1| - 4.9e-76 255.4 0.9 5.7e-76 255.2 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF377) PmbA_TldD PF01523.11 gi|284162134|ref|YP_003400757.1| - 9.4e-70 235.1 3.6 1.2e-69 234.8 2.5 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF1649 PF07855.7 gi|284162134|ref|YP_003400757.1| - 0.074 12.7 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1649) FtsH_ext PF06480.10 gi|284162134|ref|YP_003400757.1| - 0.17 12.0 1.0 0.71 10.0 0.2 2.1 2 0 0 2 2 2 0 FtsH Extracellular Ribosomal_S13 PF00416.17 gi|284162135|ref|YP_003400758.1| - 9.2e-33 112.8 0.1 1.1e-32 112.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 Utp13 PF08625.6 gi|284162135|ref|YP_003400758.1| - 0.011 15.4 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 Utp13 specific WD40 associated domain HHH_5 PF14520.1 gi|284162135|ref|YP_003400758.1| - 0.012 15.7 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix domain S4 PF01479.20 gi|284162136|ref|YP_003400759.1| - 4e-19 67.7 0.6 1.3e-18 66.0 0.1 2.1 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|284162136|ref|YP_003400759.1| - 1.3e-07 31.8 2.0 3.3e-07 30.5 1.4 1.7 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|284162137|ref|YP_003400760.1| - 1e-41 141.5 0.5 1.2e-41 141.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|284162138|ref|YP_003400761.1| - 5.3e-32 110.3 0.1 9.2e-31 106.3 0.0 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|284162138|ref|YP_003400761.1| - 1.4e-11 43.2 0.0 2e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|284162138|ref|YP_003400761.1| - 6e-09 35.1 16.0 5.3e-06 25.8 2.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284162138|ref|YP_003400761.1| - 4.6e-08 33.3 26.2 1.1e-06 28.9 9.1 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162138|ref|YP_003400761.1| - 1.1e-07 31.5 11.3 1.1e-07 31.5 7.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284162138|ref|YP_003400761.1| - 3.9e-07 30.7 10.4 0.0026 18.4 0.4 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|284162138|ref|YP_003400761.1| - 2.5e-06 27.0 23.8 0.00045 19.9 2.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284162138|ref|YP_003400761.1| - 2.9e-05 24.2 12.4 2.9e-05 24.2 8.6 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284162138|ref|YP_003400761.1| - 6.5e-05 22.8 13.1 0.031 14.2 5.0 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284162138|ref|YP_003400761.1| - 0.00019 21.7 11.6 0.0048 17.2 0.5 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162138|ref|YP_003400761.1| - 0.001 18.8 3.9 0.001 18.8 2.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284162138|ref|YP_003400761.1| - 0.0014 18.7 3.4 0.0014 18.7 2.3 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284162138|ref|YP_003400761.1| - 0.0051 16.6 15.8 0.037 13.8 0.5 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284162138|ref|YP_003400761.1| - 0.053 14.1 5.0 0.053 14.1 3.4 3.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|284162138|ref|YP_003400761.1| - 0.058 13.2 6.7 0.22 11.4 4.7 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284162138|ref|YP_003400761.1| - 0.087 13.2 1.1 0.087 13.2 0.7 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284162138|ref|YP_003400761.1| - 0.31 11.4 15.1 0.3 11.5 3.2 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain DUF1628 PF07790.6 gi|284162139|ref|YP_003400762.1| - 0.032 14.9 0.0 0.06 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) IF3_C PF00707.17 gi|284162139|ref|YP_003400762.1| - 0.042 13.5 0.0 4.8 6.9 0.1 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-3, C-terminal domain Metallophos_2 PF12850.2 gi|284162140|ref|YP_003400763.1| - 2.3e-31 108.7 0.0 3e-31 108.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284162140|ref|YP_003400763.1| - 2.4e-05 23.8 6.2 5.4e-05 22.6 4.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase TP6A_N PF04406.9 gi|284162141|ref|YP_003400764.1| - 1.7e-23 82.0 0.2 5e-23 80.5 0.1 1.8 2 0 0 2 2 2 1 Type IIB DNA topoisomerase HAD_2 PF13419.1 gi|284162141|ref|YP_003400764.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|284162142|ref|YP_003400765.1| - 5.2e-10 39.7 0.6 1.2e-08 35.3 0.1 2.8 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|284162142|ref|YP_003400765.1| - 4.8e-06 26.5 0.0 2.9e-05 24.0 0.0 2.0 1 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|284162142|ref|YP_003400765.1| - 5.1e-05 23.4 0.0 0.00016 21.8 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain NIF3 PF01784.13 gi|284162143|ref|YP_003400766.1| - 2.2e-61 207.5 0.0 2.7e-61 207.2 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Radical_SAM PF04055.16 gi|284162144|ref|YP_003400767.1| - 6.8e-06 26.3 1.0 1.1e-05 25.6 0.7 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284162144|ref|YP_003400767.1| - 0.00074 19.6 0.1 0.004 17.2 0.0 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284162144|ref|YP_003400767.1| - 0.0089 16.0 0.0 0.026 14.5 0.0 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain MtrA PF04208.9 gi|284162144|ref|YP_003400767.1| - 0.016 14.6 0.1 0.028 13.8 0.1 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit A SRP54 PF00448.17 gi|284162145|ref|YP_003400768.1| - 3.4e-76 255.0 0.9 6.7e-76 254.1 0.6 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|284162145|ref|YP_003400768.1| - 1.1e-31 109.1 3.9 1e-30 106.0 2.5 2.6 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|284162145|ref|YP_003400768.1| - 1.5e-15 56.9 5.3 1.5e-15 56.9 3.6 3.4 4 1 1 5 5 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|284162145|ref|YP_003400768.1| - 2.6e-11 43.3 3.1 4.3e-11 42.5 0.9 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|284162145|ref|YP_003400768.1| - 6.7e-08 32.5 0.0 1.3e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|284162145|ref|YP_003400768.1| - 1.6e-07 30.9 2.4 2.4e-06 27.1 1.7 2.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|284162145|ref|YP_003400768.1| - 9.2e-07 29.7 1.0 2.6e-06 28.2 0.1 2.3 3 0 0 3 3 1 1 AAA domain AAA_22 PF13401.1 gi|284162145|ref|YP_003400768.1| - 5.8e-06 26.4 0.5 2.3e-05 24.5 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|284162145|ref|YP_003400768.1| - 1e-05 25.8 2.2 3.7e-05 24.0 0.0 2.7 3 0 0 3 3 3 1 AAA domain 6PF2K PF01591.13 gi|284162145|ref|YP_003400768.1| - 1.2e-05 24.5 0.2 0.00013 21.1 0.0 2.3 1 1 1 2 2 2 1 6-phosphofructo-2-kinase MobB PF03205.9 gi|284162145|ref|YP_003400768.1| - 1.4e-05 24.8 0.3 5.3e-05 22.9 0.2 2.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|284162145|ref|YP_003400768.1| - 7.9e-05 22.3 0.1 0.00021 20.9 0.1 1.8 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|284162145|ref|YP_003400768.1| - 0.00014 21.4 0.3 0.00048 19.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|284162145|ref|YP_003400768.1| - 0.0012 18.0 0.1 0.0031 16.6 0.1 1.7 1 0 0 1 1 1 1 Zeta toxin ArgK PF03308.11 gi|284162145|ref|YP_003400768.1| - 0.0012 17.7 0.1 0.021 13.6 0.0 2.6 2 0 0 2 2 2 1 ArgK protein AAA_16 PF13191.1 gi|284162145|ref|YP_003400768.1| - 0.0012 18.8 0.1 0.0054 16.7 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain KTI12 PF08433.5 gi|284162145|ref|YP_003400768.1| - 0.0015 17.8 2.3 0.0032 16.7 0.0 2.4 3 0 0 3 3 2 1 Chromatin associated protein KTI12 ResIII PF04851.10 gi|284162145|ref|YP_003400768.1| - 0.0021 17.9 0.4 0.006 16.4 0.2 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|284162145|ref|YP_003400768.1| - 0.0042 16.5 0.1 0.0069 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain APS_kinase PF01583.15 gi|284162145|ref|YP_003400768.1| - 0.0044 16.6 0.0 0.009 15.6 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase PduV-EutP PF10662.4 gi|284162145|ref|YP_003400768.1| - 0.0045 16.4 0.5 0.22 11.0 0.0 2.7 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|284162145|ref|YP_003400768.1| - 0.0054 16.1 2.8 0.0058 16.0 0.1 2.3 3 0 0 3 3 2 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.12 gi|284162145|ref|YP_003400768.1| - 0.0059 16.1 0.2 0.029 13.9 0.1 2.2 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|284162145|ref|YP_003400768.1| - 0.0061 16.2 0.0 0.02 14.6 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain MMR_HSR1 PF01926.18 gi|284162145|ref|YP_003400768.1| - 0.0071 16.3 0.2 0.028 14.3 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_28 PF13521.1 gi|284162145|ref|YP_003400768.1| - 0.0072 16.2 0.2 0.028 14.3 0.1 2.0 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284162145|ref|YP_003400768.1| - 0.0095 15.3 3.3 0.13 11.6 2.3 2.7 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|284162145|ref|YP_003400768.1| - 0.017 14.5 0.2 0.017 14.5 0.1 2.4 3 1 1 4 4 2 0 Thymidylate kinase AAA_31 PF13614.1 gi|284162145|ref|YP_003400768.1| - 0.02 14.8 0.2 0.2 11.5 0.1 2.5 2 1 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|284162145|ref|YP_003400768.1| - 0.024 13.8 1.9 2.4 7.3 1.3 2.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF815 PF05673.8 gi|284162145|ref|YP_003400768.1| - 0.024 13.5 0.1 1.5 7.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF815) TrwB_AAD_bind PF10412.4 gi|284162145|ref|YP_003400768.1| - 0.031 12.9 0.1 0.069 11.7 0.1 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_26 PF13500.1 gi|284162145|ref|YP_003400768.1| - 0.043 13.4 0.3 0.18 11.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|284162145|ref|YP_003400768.1| - 0.043 14.0 0.9 0.45 10.7 0.2 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Glyco_transf_4 PF13439.1 gi|284162145|ref|YP_003400768.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 AAA_5 PF07728.9 gi|284162145|ref|YP_003400768.1| - 0.064 12.9 0.1 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|284162145|ref|YP_003400768.1| - 0.069 13.6 0.4 0.54 10.7 0.3 2.5 1 1 0 1 1 1 0 Miro-like protein Arf PF00025.16 gi|284162145|ref|YP_003400768.1| - 0.075 12.2 0.8 0.17 11.1 0.2 1.9 2 0 0 2 2 1 0 ADP-ribosylation factor family LpxK PF02606.9 gi|284162145|ref|YP_003400768.1| - 0.097 11.6 1.4 0.13 11.1 0.1 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NTPase_1 PF03266.10 gi|284162145|ref|YP_003400768.1| - 0.25 11.0 4.2 0.41 10.3 0.1 2.6 3 0 0 3 3 2 0 NTPase UvrD-helicase PF00580.16 gi|284162145|ref|YP_003400768.1| - 0.67 9.1 3.8 0.74 9.0 0.7 2.4 2 1 0 2 2 2 0 UvrD/REP helicase N-terminal domain ATP-cone PF03477.11 gi|284162145|ref|YP_003400768.1| - 5.1 7.5 13.8 0.61 10.5 1.6 3.6 4 1 0 4 4 2 0 ATP cone domain CbiA PF01656.18 gi|284162146|ref|YP_003400769.1| - 1.5e-21 76.7 0.0 2e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|284162146|ref|YP_003400769.1| - 6.2e-09 35.9 0.0 1.5e-07 31.4 0.0 2.5 2 1 1 3 3 3 1 AAA domain APS_kinase PF01583.15 gi|284162146|ref|YP_003400769.1| - 2.4e-06 27.3 0.2 4.7e-06 26.3 0.1 1.5 1 1 0 1 1 1 1 Adenylylsulphate kinase ArsA_ATPase PF02374.10 gi|284162146|ref|YP_003400769.1| - 4e-06 26.0 0.1 9e-06 24.9 0.0 1.6 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_10 PF12846.2 gi|284162146|ref|YP_003400769.1| - 4.8e-06 26.2 0.1 1.5e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain MipZ PF09140.6 gi|284162146|ref|YP_003400769.1| - 6.6e-06 25.3 0.0 1.5e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 ATPase MipZ AAA_17 PF13207.1 gi|284162146|ref|YP_003400769.1| - 3.9e-05 24.4 1.0 0.00011 22.9 0.7 2.0 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|284162146|ref|YP_003400769.1| - 4.1e-05 22.8 0.1 0.0001 21.6 0.1 1.8 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|284162146|ref|YP_003400769.1| - 4.2e-05 23.2 0.1 8.4e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.12 gi|284162146|ref|YP_003400769.1| - 4.4e-05 23.3 0.0 0.00015 21.7 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF87 KTI12 PF08433.5 gi|284162146|ref|YP_003400769.1| - 0.00026 20.3 0.0 0.00091 18.5 0.0 1.9 2 1 0 2 2 2 1 Chromatin associated protein KTI12 YhjQ PF06564.7 gi|284162146|ref|YP_003400769.1| - 0.00033 20.1 0.0 0.055 12.8 0.0 2.1 2 0 0 2 2 2 1 YhjQ protein AAA_25 PF13481.1 gi|284162146|ref|YP_003400769.1| - 0.00037 19.9 0.0 0.001 18.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain LpxK PF02606.9 gi|284162146|ref|YP_003400769.1| - 0.00055 18.9 0.0 0.21 10.5 0.0 2.1 2 0 0 2 2 2 2 Tetraacyldisaccharide-1-P 4'-kinase FtsK_SpoIIIE PF01580.13 gi|284162146|ref|YP_003400769.1| - 0.0015 18.0 0.8 0.0027 17.2 0.4 1.6 1 1 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|284162146|ref|YP_003400769.1| - 0.0024 17.8 0.1 0.0052 16.7 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain SRP54 PF00448.17 gi|284162146|ref|YP_003400769.1| - 0.0026 17.2 0.2 0.012 15.0 0.1 2.0 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain Thymidylate_kin PF02223.12 gi|284162146|ref|YP_003400769.1| - 0.0045 16.3 0.1 0.079 12.3 0.0 2.4 2 1 0 2 2 2 1 Thymidylate kinase ArgK PF03308.11 gi|284162146|ref|YP_003400769.1| - 0.0079 15.0 0.1 0.012 14.4 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_18 PF13238.1 gi|284162146|ref|YP_003400769.1| - 0.0091 16.2 1.5 0.02 15.1 0.6 2.0 1 1 0 1 1 1 1 AAA domain Gtr1_RagA PF04670.7 gi|284162146|ref|YP_003400769.1| - 0.016 14.3 0.4 0.27 10.3 0.0 2.2 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Zeta_toxin PF06414.7 gi|284162146|ref|YP_003400769.1| - 0.019 14.0 0.0 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin KaiC PF06745.8 gi|284162146|ref|YP_003400769.1| - 0.022 13.8 0.0 0.13 11.4 0.0 2.0 1 1 0 1 1 1 0 KaiC AAA_19 PF13245.1 gi|284162146|ref|YP_003400769.1| - 0.028 14.1 0.0 0.066 12.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Miro PF08477.8 gi|284162146|ref|YP_003400769.1| - 0.032 14.7 1.3 1.2 9.6 0.4 2.7 2 1 0 2 2 2 0 Miro-like protein Mur_ligase_M PF08245.7 gi|284162146|ref|YP_003400769.1| - 0.038 14.0 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 Mur ligase middle domain Abhydrolase_5 PF12695.2 gi|284162146|ref|YP_003400769.1| - 0.046 13.4 0.0 0.056 13.2 0.0 1.3 1 1 0 1 1 1 0 Alpha/beta hydrolase family TrwB_AAD_bind PF10412.4 gi|284162146|ref|YP_003400769.1| - 0.053 12.1 0.2 0.12 10.9 0.1 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|284162146|ref|YP_003400769.1| - 0.058 12.2 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein VirC1 PF07015.6 gi|284162146|ref|YP_003400769.1| - 0.062 12.3 0.0 0.094 11.7 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein ABC_tran PF00005.22 gi|284162146|ref|YP_003400769.1| - 0.064 13.5 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter PRK PF00485.13 gi|284162146|ref|YP_003400769.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.10 gi|284162146|ref|YP_003400769.1| - 0.072 12.7 0.1 0.17 11.6 0.1 1.6 1 0 0 1 1 1 0 NTPase cobW PF02492.14 gi|284162146|ref|YP_003400769.1| - 0.077 12.4 0.9 1.1 8.6 0.0 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|284162146|ref|YP_003400769.1| - 0.078 12.4 0.1 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein G-alpha PF00503.15 gi|284162146|ref|YP_003400769.1| - 0.087 11.4 0.7 0.3 9.7 0.2 1.8 2 0 0 2 2 2 0 G-protein alpha subunit AAA_30 PF13604.1 gi|284162146|ref|YP_003400769.1| - 0.096 12.2 0.1 0.2 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|284162146|ref|YP_003400769.1| - 0.098 12.8 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|284162146|ref|YP_003400769.1| - 0.1 12.0 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein FeoB_N PF02421.13 gi|284162146|ref|YP_003400769.1| - 0.12 11.6 0.0 0.48 9.6 0.0 1.8 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_29 PF13555.1 gi|284162146|ref|YP_003400769.1| - 0.12 11.8 1.3 0.26 10.8 0.6 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain YjeF_N PF03853.10 gi|284162146|ref|YP_003400769.1| - 0.14 11.7 0.0 0.31 10.6 0.0 1.7 1 1 0 1 1 1 0 YjeF-related protein N-terminus TrkA_N PF02254.13 gi|284162146|ref|YP_003400769.1| - 0.15 12.0 0.1 2.7 8.0 0.0 2.3 2 1 0 2 2 2 0 TrkA-N domain AMP-binding_C_2 PF14535.1 gi|284162147|ref|YP_003400770.1| - 3e-33 113.7 0.2 6.2e-33 112.7 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|284162147|ref|YP_003400770.1| - 3.5e-25 88.2 0.0 9.9e-25 86.7 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|284162147|ref|YP_003400770.1| - 4.9e-06 25.4 0.0 0.00096 17.9 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|284162147|ref|YP_003400770.1| - 0.0012 17.4 0.0 0.037 12.5 0.0 2.1 2 0 0 2 2 2 2 GH3 auxin-responsive promoter Cation_efflux PF01545.16 gi|284162148|ref|YP_003400771.1| - 1.7e-60 204.5 13.1 2.1e-60 204.2 9.1 1.1 1 0 0 1 1 1 1 Cation efflux family Nitro_FeMo-Co PF02579.12 gi|284162148|ref|YP_003400771.1| - 1.1e-15 57.4 0.3 4.3e-15 55.5 0.0 2.0 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor DUF444 PF04285.7 gi|284162148|ref|YP_003400771.1| - 0.062 11.9 0.1 0.092 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF444) PAP2 PF01569.16 gi|284162148|ref|YP_003400771.1| - 0.1 12.2 6.6 2.8 7.6 0.7 2.7 2 0 0 2 2 2 0 PAP2 superfamily DinI PF06183.8 gi|284162148|ref|YP_003400771.1| - 0.13 12.2 0.5 0.47 10.5 0.1 2.1 2 0 0 2 2 2 0 DinI-like family Baculo_p74 PF04583.7 gi|284162148|ref|YP_003400771.1| - 1.8 7.7 5.1 0.28 10.3 0.3 2.0 2 0 0 2 2 2 0 Baculoviridae p74 conserved region AMP-binding PF00501.23 gi|284162149|ref|YP_003400772.1| - 2e-106 355.8 0.0 2.4e-106 355.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284162149|ref|YP_003400772.1| - 2.5e-12 47.5 0.2 7.4e-12 46.0 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF2045 PF09741.4 gi|284162149|ref|YP_003400772.1| - 0.052 12.6 0.0 0.096 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2045) AMP-binding PF00501.23 gi|284162150|ref|YP_003400773.1| - 1.2e-68 231.3 0.0 1.6e-68 231.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|284162150|ref|YP_003400773.1| - 3.6e-19 69.4 0.2 7e-19 68.5 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AdoMet_Synthase PF01941.14 gi|284162151|ref|YP_003400774.1| - 1.4e-180 600.0 2.8 1.6e-180 599.8 1.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) HisG PF01634.13 gi|284162152|ref|YP_003400775.1| - 2.5e-53 180.0 0.9 3.5e-53 179.5 0.6 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|284162152|ref|YP_003400775.1| - 2.3e-26 91.5 0.2 4.4e-26 90.6 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|284162152|ref|YP_003400775.1| - 1.1e-07 31.7 0.2 0.00094 18.8 0.1 2.3 1 1 1 2 2 2 2 NMT1/THI5 like SBP_bac_3 PF00497.15 gi|284162152|ref|YP_003400775.1| - 0.0024 17.1 0.1 0.0032 16.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.2 gi|284162152|ref|YP_003400775.1| - 0.045 13.1 0.0 0.14 11.4 0.0 1.7 1 1 1 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Memo PF01875.12 gi|284162154|ref|YP_003400777.1| - 3.2e-81 272.2 0.2 3.6e-81 272.0 0.2 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|284162154|ref|YP_003400777.1| - 0.011 14.7 0.0 0.018 14.0 0.0 1.4 1 1 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase TPR_12 PF13424.1 gi|284162155|ref|YP_003400778.1| - 1.8e-28 98.2 16.2 1.5e-11 44.0 0.7 5.4 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|284162155|ref|YP_003400778.1| - 6.6e-21 72.5 24.2 3.6e-06 26.4 0.4 9.0 9 0 0 9 9 9 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|284162155|ref|YP_003400778.1| - 7.6e-19 66.4 32.6 5.9e-06 25.6 0.6 9.1 9 0 0 9 9 9 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|284162155|ref|YP_003400778.1| - 3.1e-17 61.9 26.1 8.4e-09 34.9 0.4 6.2 4 2 2 6 6 6 3 TPR repeat TPR_7 PF13176.1 gi|284162155|ref|YP_003400778.1| - 5.8e-17 60.0 17.1 2.2e-05 23.8 0.0 7.0 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_10 PF13374.1 gi|284162155|ref|YP_003400778.1| - 7.1e-15 54.3 11.8 2.1e-05 24.2 0.1 6.2 6 0 0 6 6 5 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|284162155|ref|YP_003400778.1| - 4.1e-14 52.7 4.0 6.1e-05 23.5 0.1 5.2 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|284162155|ref|YP_003400778.1| - 5.7e-14 50.7 33.0 0.00012 21.6 0.9 7.9 9 0 0 9 9 9 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|284162155|ref|YP_003400778.1| - 4.2e-12 45.5 0.3 0.3 11.8 0.0 6.5 4 3 3 7 7 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|284162155|ref|YP_003400778.1| - 2e-09 37.6 10.3 0.0018 18.5 0.0 5.0 5 1 0 6 6 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|284162155|ref|YP_003400778.1| - 2.1e-09 37.3 18.2 1.7e-05 24.8 3.7 5.1 2 2 3 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 Apc5 PF12862.2 gi|284162155|ref|YP_003400778.1| - 7e-08 32.2 1.6 0.012 15.4 0.2 4.0 1 1 2 3 3 3 2 Anaphase-promoting complex subunit 5 SNAP PF14938.1 gi|284162155|ref|YP_003400778.1| - 7.9e-07 28.5 9.0 0.00011 21.4 0.8 3.4 2 1 0 3 3 3 2 Soluble NSF attachment protein, SNAP TPR_6 PF13174.1 gi|284162155|ref|YP_003400778.1| - 9.6e-05 22.6 11.9 4 8.1 0.0 6.4 8 0 0 8 8 5 1 Tetratricopeptide repeat TPR_17 PF13431.1 gi|284162155|ref|YP_003400778.1| - 0.0005 20.0 14.1 1.3 9.3 0.0 7.7 8 0 0 8 8 8 1 Tetratricopeptide repeat TPR_21 PF09976.4 gi|284162155|ref|YP_003400778.1| - 0.0005 20.0 1.2 0.0028 17.6 0.1 2.7 2 1 1 3 3 3 1 Tetratricopeptide repeat DUF2989 PF11207.3 gi|284162155|ref|YP_003400778.1| - 0.029 13.8 7.2 0.6 9.5 0.6 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2989) DUF2225 PF09986.4 gi|284162155|ref|YP_003400778.1| - 0.047 13.1 12.1 0.33 10.4 0.4 3.2 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Sel1 PF08238.7 gi|284162155|ref|YP_003400778.1| - 0.081 13.5 16.3 17 6.1 0.2 6.8 6 1 1 7 7 7 0 Sel1 repeat TetR_C_8 PF14278.1 gi|284162155|ref|YP_003400778.1| - 0.21 11.9 2.7 7.3 7.0 0.0 3.7 3 1 0 3 3 3 0 Transcriptional regulator C-terminal region PPR PF01535.15 gi|284162155|ref|YP_003400778.1| - 0.26 11.3 9.5 3 8.0 0.0 5.9 7 0 0 7 7 6 0 PPR repeat Phage_connect_1 PF05135.8 gi|284162155|ref|YP_003400778.1| - 0.84 9.8 7.2 0.55 10.4 0.1 3.4 3 0 0 3 3 3 0 Phage gp6-like head-tail connector protein SPOB_a PF14689.1 gi|284162155|ref|YP_003400778.1| - 0.92 9.1 15.4 24 4.5 0.6 6.2 6 0 0 6 6 5 0 Sensor_kinase_SpoOB-type, alpha-helical domain Radical_SAM PF04055.16 gi|284162156|ref|YP_003400779.1| - 2.9e-14 53.5 9.1 3.1e-12 46.9 0.0 3.7 4 0 0 4 4 4 2 Radical SAM superfamily LAGLIDADG_3 PF14528.1 gi|284162156|ref|YP_003400779.1| - 5.7e-12 45.7 6.8 7.3e-11 42.1 0.2 3.7 4 0 0 4 4 4 1 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|284162156|ref|YP_003400779.1| - 6e-07 28.6 1.3 6.3e-05 22.0 0.1 2.4 2 0 0 2 2 2 2 Intein splicing domain Hom_end PF05204.9 gi|284162156|ref|YP_003400779.1| - 1.4e-05 25.0 0.1 0.00013 21.9 0.0 2.2 2 0 0 2 2 2 1 Homing endonuclease Fer4_12 PF13353.1 gi|284162156|ref|YP_003400779.1| - 0.00023 21.2 0.4 0.015 15.4 0.0 2.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain PT-HINT PF07591.6 gi|284162156|ref|YP_003400779.1| - 0.0027 17.5 0.7 0.47 10.3 0.2 2.5 2 0 0 2 2 2 1 Pretoxin HINT domain Fer4_14 PF13394.1 gi|284162156|ref|YP_003400779.1| - 0.013 15.5 4.1 0.098 12.6 0.0 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Hint PF01079.15 gi|284162156|ref|YP_003400779.1| - 0.098 11.8 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Hint module Peptidase_M20 PF01546.23 gi|284162157|ref|YP_003400780.1| - 7.4e-18 64.7 0.1 1e-17 64.2 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|284162157|ref|YP_003400780.1| - 1.2e-13 50.7 0.0 2.8e-13 49.6 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|284162157|ref|YP_003400780.1| - 0.0021 17.8 0.0 0.019 14.7 0.0 2.0 1 1 0 1 1 1 1 Peptidase family M28 Acetyltransf_1 PF00583.19 gi|284162158|ref|YP_003400781.1| - 1.3e-24 85.9 0.1 1.8e-24 85.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284162158|ref|YP_003400781.1| - 5.3e-13 48.9 0.1 7.8e-13 48.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|284162158|ref|YP_003400781.1| - 2.4e-11 43.9 0.1 2.9e-11 43.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|284162158|ref|YP_003400781.1| - 1.1e-10 41.4 0.0 1.8e-10 40.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|284162158|ref|YP_003400781.1| - 1.7e-10 41.0 0.0 2e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|284162158|ref|YP_003400781.1| - 8e-10 38.7 0.1 1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|284162158|ref|YP_003400781.1| - 1.6e-09 37.5 0.0 2.4e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|284162158|ref|YP_003400781.1| - 4.9e-09 35.8 0.0 8.6e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|284162158|ref|YP_003400781.1| - 4.4e-06 26.7 0.0 5.4e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|284162158|ref|YP_003400781.1| - 0.004 17.1 0.0 0.006 16.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|284162158|ref|YP_003400781.1| - 0.045 13.0 0.0 0.061 12.6 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 YjfB_motility PF14070.1 gi|284162158|ref|YP_003400781.1| - 0.15 11.9 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative motility protein MutS_V PF00488.16 gi|284162159|ref|YP_003400782.1| - 2.9e-88 295.2 0.0 5.5e-88 294.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|284162159|ref|YP_003400782.1| - 1.2e-56 191.6 4.7 2.1e-56 190.9 1.4 2.3 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|284162159|ref|YP_003400782.1| - 8.4e-45 151.4 0.0 1.8e-44 150.3 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|284162159|ref|YP_003400782.1| - 3.9e-25 87.8 1.1 3.9e-25 87.8 0.7 3.2 4 0 0 4 4 4 1 MutS family domain IV MutS_II PF05188.12 gi|284162159|ref|YP_003400782.1| - 4.2e-19 68.9 0.6 4.2e-19 68.9 0.4 2.5 3 0 0 3 3 3 1 MutS domain II AAA_14 PF13173.1 gi|284162159|ref|YP_003400782.1| - 0.018 14.9 0.5 0.2 11.5 0.0 3.0 3 1 0 3 3 3 0 AAA domain AAA_29 PF13555.1 gi|284162159|ref|YP_003400782.1| - 0.039 13.4 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284162159|ref|YP_003400782.1| - 0.91 9.8 0.0 0.91 9.8 0.0 4.1 3 1 0 3 3 3 0 AAA domain Spectrin PF00435.16 gi|284162159|ref|YP_003400782.1| - 1.3 9.3 8.1 0.78 10.0 0.3 3.7 4 0 0 4 4 4 0 Spectrin repeat DUF1626 PF07788.6 gi|284162160|ref|YP_003400783.1| - 0.021 14.5 0.4 0.054 13.2 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1626) Fae PF08714.6 gi|284162161|ref|YP_003400784.1| - 9.4e-73 243.1 0.3 1.4e-72 242.5 0.2 1.3 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|284162161|ref|YP_003400784.1| - 1.8e-21 76.5 1.6 6.4e-21 74.8 1.1 1.9 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|284162161|ref|YP_003400784.1| - 5.3e-06 25.6 0.1 1.4e-05 24.3 0.1 1.7 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|284162161|ref|YP_003400784.1| - 1.5e-05 24.3 0.5 8.3e-05 21.9 0.0 2.2 2 0 0 2 2 2 1 PcrB family IGPS PF00218.16 gi|284162161|ref|YP_003400784.1| - 0.0008 18.5 0.0 0.034 13.2 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.12 gi|284162161|ref|YP_003400784.1| - 0.00095 18.3 0.1 0.0018 17.4 0.1 1.4 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI QRPTase_C PF01729.14 gi|284162161|ref|YP_003400784.1| - 0.003 17.0 0.2 0.0056 16.2 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.9 gi|284162161|ref|YP_003400784.1| - 0.0044 16.0 0.7 0.012 14.6 0.4 1.8 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|284162161|ref|YP_003400784.1| - 0.0057 15.9 0.3 0.013 14.7 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|284162161|ref|YP_003400784.1| - 0.24 10.1 1.8 0.72 8.6 1.2 1.7 1 1 0 1 1 1 0 FMN-dependent dehydrogenase DHHA2 PF02833.9 gi|284162162|ref|YP_003400785.1| - 4.8e-39 133.4 0.1 7.4e-39 132.8 0.0 1.3 1 0 0 1 1 1 1 DHHA2 domain DHH PF01368.15 gi|284162162|ref|YP_003400785.1| - 2.5e-30 105.0 0.1 6.2e-30 103.7 0.0 1.6 1 0 0 1 1 1 1 DHH family RibD_C PF01872.12 gi|284162163|ref|YP_003400786.1| - 1.5e-55 187.9 0.1 1.7e-55 187.7 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain MoCF_biosynth PF00994.19 gi|284162164|ref|YP_003400787.1| - 6.7e-36 122.8 0.2 8.7e-36 122.4 0.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain IF-2B PF01008.12 gi|284162165|ref|YP_003400788.1| - 6.7e-28 97.4 0.0 7.6e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family POR PF01558.13 gi|284162166|ref|YP_003400789.1| - 1.6e-39 135.5 0.0 1.9e-39 135.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|284162167|ref|YP_003400790.1| - 7.6e-16 56.9 21.3 2.5e-08 33.1 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284162167|ref|YP_003400790.1| - 9.2e-14 51.0 12.5 1.1e-13 50.7 8.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284162167|ref|YP_003400790.1| - 7.2e-13 48.6 24.6 1.1e-09 38.5 9.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284162167|ref|YP_003400790.1| - 3.1e-11 42.6 19.5 2e-06 27.4 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284162167|ref|YP_003400790.1| - 6.2e-09 35.5 14.2 6.5e-05 22.6 1.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162167|ref|YP_003400790.1| - 7e-08 31.9 15.6 0.00068 19.4 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284162167|ref|YP_003400790.1| - 7.4e-08 32.5 14.3 1e-07 32.0 9.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284162167|ref|YP_003400790.1| - 4.3e-07 30.5 12.6 0.00023 21.8 1.5 2.3 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|284162167|ref|YP_003400790.1| - 1.2e-06 28.7 6.4 0.0025 18.0 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284162167|ref|YP_003400790.1| - 1.2e-05 25.7 11.2 0.016 15.7 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|284162167|ref|YP_003400790.1| - 3e-05 24.2 12.6 0.0039 17.5 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|284162167|ref|YP_003400790.1| - 7.7e-05 22.6 13.1 0.00052 19.9 9.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284162167|ref|YP_003400790.1| - 0.00037 20.5 17.4 0.039 14.2 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284162167|ref|YP_003400790.1| - 0.0048 17.2 17.8 0.1 13.0 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284162167|ref|YP_003400790.1| - 0.021 15.3 5.4 0.021 15.3 3.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF4001 PF13165.1 gi|284162167|ref|YP_003400790.1| - 3.6 7.3 6.6 4.3 7.0 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) POR_N PF01855.14 gi|284162168|ref|YP_003400791.1| - 2.2e-74 249.8 0.1 2.7e-74 249.5 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|284162168|ref|YP_003400791.1| - 0.00052 19.9 0.0 0.0011 18.9 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain DUF4363 PF14276.1 gi|284162168|ref|YP_003400791.1| - 0.066 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) TPP_enzyme_C PF02775.16 gi|284162169|ref|YP_003400792.1| - 8e-25 87.2 0.0 1.1e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4 PF00037.22 gi|284162170|ref|YP_003400793.1| - 1.4e-19 68.8 34.0 7e-08 31.7 2.6 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|284162170|ref|YP_003400793.1| - 1.4e-16 61.0 0.0 2.5e-15 56.9 0.0 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|284162170|ref|YP_003400793.1| - 1.1e-12 48.0 35.6 3.7e-10 40.0 5.9 4.5 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284162170|ref|YP_003400793.1| - 2.1e-12 47.1 29.2 3.2e-08 33.7 6.3 4.5 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284162170|ref|YP_003400793.1| - 1.1e-11 44.3 24.4 7.5e-09 35.3 6.2 4.4 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162170|ref|YP_003400793.1| - 4.5e-10 39.1 30.5 5.5e-08 32.4 6.4 3.6 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284162170|ref|YP_003400793.1| - 4.7e-09 35.7 46.2 0.00016 21.4 1.6 5.4 6 0 0 6 6 4 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|284162170|ref|YP_003400793.1| - 2.7e-08 33.2 40.8 0.0007 19.3 0.9 5.2 6 0 0 6 6 4 3 4Fe-4S binding domain NAD_binding_8 PF13450.1 gi|284162170|ref|YP_003400793.1| - 4.3e-08 33.0 0.0 9.9e-08 31.9 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_16 PF13484.1 gi|284162170|ref|YP_003400793.1| - 6.1e-08 33.2 25.2 0.0061 17.2 0.5 5.0 5 0 0 5 5 4 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|284162170|ref|YP_003400793.1| - 5.1e-07 30.1 22.6 0.0019 18.7 1.2 4.1 3 1 1 4 4 3 3 4Fe-4S single cluster domain FAD_oxidored PF12831.2 gi|284162170|ref|YP_003400793.1| - 5.2e-07 29.0 0.8 1.1e-06 28.0 0.5 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|284162170|ref|YP_003400793.1| - 1.5e-06 28.4 2.2 1.9e-05 24.9 1.1 2.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284162170|ref|YP_003400793.1| - 1.6e-06 27.2 1.3 2.9e-06 26.4 0.9 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|284162170|ref|YP_003400793.1| - 2.8e-06 26.4 1.2 4.8e-06 25.6 0.8 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|284162170|ref|YP_003400793.1| - 3.1e-06 26.4 1.5 5.4e-06 25.7 1.0 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|284162170|ref|YP_003400793.1| - 6.5e-05 21.9 0.0 0.00013 21.0 0.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Fer4_17 PF13534.1 gi|284162170|ref|YP_003400793.1| - 0.00039 20.6 26.1 0.085 13.2 0.4 5.2 5 0 0 5 5 5 3 4Fe-4S dicluster domain HI0933_like PF03486.9 gi|284162170|ref|YP_003400793.1| - 0.00089 17.8 0.1 0.0059 15.1 0.3 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|284162170|ref|YP_003400793.1| - 0.00095 19.2 0.1 0.0047 17.0 0.1 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|284162170|ref|YP_003400793.1| - 0.0013 17.8 0.6 0.003 16.6 0.3 1.7 1 1 1 2 2 2 1 Thi4 family Fer4_8 PF13183.1 gi|284162170|ref|YP_003400793.1| - 0.0022 17.9 10.4 0.0022 17.9 7.2 4.4 2 2 3 5 5 5 3 4Fe-4S dicluster domain Amino_oxidase PF01593.19 gi|284162170|ref|YP_003400793.1| - 0.0066 15.5 0.0 0.017 14.2 0.0 1.6 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Fer4_4 PF12800.2 gi|284162170|ref|YP_003400793.1| - 0.015 15.6 2.5 0.015 15.6 1.8 5.9 6 0 0 6 6 5 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|284162170|ref|YP_003400793.1| - 0.015 15.6 20.3 0.3 11.5 0.9 4.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284162170|ref|YP_003400793.1| - 0.019 15.3 28.7 0.16 12.4 0.6 4.8 4 1 1 5 5 4 0 4Fe-4S dicluster domain AlaDh_PNT_C PF01262.16 gi|284162170|ref|YP_003400793.1| - 0.056 13.0 0.0 0.33 10.4 0.0 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|284162170|ref|YP_003400793.1| - 0.071 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|284162170|ref|YP_003400793.1| - 0.079 12.6 0.5 0.18 11.4 0.1 1.8 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|284162170|ref|YP_003400793.1| - 0.17 10.5 0.7 0.3 9.6 0.5 1.4 1 0 0 1 1 1 0 Tryptophan halogenase ABC_tran PF00005.22 gi|284162172|ref|YP_003400795.1| - 4.2e-36 124.2 0.0 5.6e-36 123.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284162172|ref|YP_003400795.1| - 2.2e-13 50.8 0.2 3.8e-07 30.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|284162172|ref|YP_003400795.1| - 5.5e-11 42.1 1.1 9.9e-05 21.5 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|284162172|ref|YP_003400795.1| - 9.8e-09 35.8 0.1 1.2e-08 35.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284162172|ref|YP_003400795.1| - 1.4e-08 34.2 0.2 2.3e-07 30.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|284162172|ref|YP_003400795.1| - 3.2e-07 30.5 0.5 3.4e-06 27.1 0.3 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|284162172|ref|YP_003400795.1| - 1.6e-06 27.5 0.0 3.3e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|284162172|ref|YP_003400795.1| - 5.4e-06 26.5 0.9 8.5e-05 22.7 0.6 2.1 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|284162172|ref|YP_003400795.1| - 1.5e-05 23.8 0.2 0.064 11.8 0.0 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_14 PF13173.1 gi|284162172|ref|YP_003400795.1| - 0.00031 20.6 0.1 0.003 17.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain RNA12 PF10443.4 gi|284162172|ref|YP_003400795.1| - 0.00055 18.5 0.1 0.00081 17.9 0.0 1.2 1 0 0 1 1 1 1 RNA12 protein MobB PF03205.9 gi|284162172|ref|YP_003400795.1| - 0.00098 18.8 0.4 0.0018 17.9 0.0 1.7 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|284162172|ref|YP_003400795.1| - 0.0012 18.7 0.1 0.016 15.0 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|284162172|ref|YP_003400795.1| - 0.0015 18.2 0.0 0.0035 17.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|284162172|ref|YP_003400795.1| - 0.0015 19.3 0.4 0.004 17.9 0.3 1.9 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|284162172|ref|YP_003400795.1| - 0.0018 17.9 1.2 0.85 9.3 0.1 2.3 2 0 0 2 2 2 2 NTPase AAA_10 PF12846.2 gi|284162172|ref|YP_003400795.1| - 0.0023 17.4 0.1 0.0067 15.8 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain Zeta_toxin PF06414.7 gi|284162172|ref|YP_003400795.1| - 0.0031 16.6 0.0 0.0052 15.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin Arch_ATPase PF01637.13 gi|284162172|ref|YP_003400795.1| - 0.0057 16.3 0.0 0.0077 15.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|284162172|ref|YP_003400795.1| - 0.0058 16.2 0.1 0.028 14.0 0.0 1.9 2 0 0 2 2 2 1 NACHT domain DUF258 PF03193.11 gi|284162172|ref|YP_003400795.1| - 0.0061 15.7 0.0 0.0087 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|284162172|ref|YP_003400795.1| - 0.0087 15.9 0.0 0.019 14.8 0.0 1.6 2 0 0 2 2 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|284162172|ref|YP_003400795.1| - 0.011 15.2 0.1 0.027 13.9 0.1 1.9 1 1 0 1 1 1 0 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|284162172|ref|YP_003400795.1| - 0.016 14.7 0.0 0.042 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|284162172|ref|YP_003400795.1| - 0.017 13.9 0.1 0.034 12.9 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.24 gi|284162172|ref|YP_003400795.1| - 0.018 15.2 0.1 0.17 12.0 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|284162172|ref|YP_003400795.1| - 0.029 13.5 0.0 0.073 12.2 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|284162172|ref|YP_003400795.1| - 0.034 13.5 0.1 0.29 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|284162172|ref|YP_003400795.1| - 0.035 13.8 0.0 0.38 10.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Rad17 PF03215.10 gi|284162172|ref|YP_003400795.1| - 0.047 12.3 0.1 0.057 12.0 0.0 1.3 1 1 0 1 1 1 0 Rad17 cell cycle checkpoint protein MutS_V PF00488.16 gi|284162172|ref|YP_003400795.1| - 0.064 12.6 0.0 0.15 11.4 0.0 1.5 2 0 0 2 2 2 0 MutS domain V AAA_18 PF13238.1 gi|284162172|ref|YP_003400795.1| - 0.065 13.5 0.6 0.19 12.0 0.4 2.0 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|284162172|ref|YP_003400795.1| - 0.071 11.9 0.0 0.15 10.9 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein KH_2 PF07650.12 gi|284162172|ref|YP_003400795.1| - 0.08 12.5 0.5 0.2 11.2 0.3 1.7 1 0 0 1 1 1 0 KH domain SRP54 PF00448.17 gi|284162172|ref|YP_003400795.1| - 0.082 12.3 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|284162172|ref|YP_003400795.1| - 0.084 12.8 0.3 0.15 12.0 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.1 gi|284162172|ref|YP_003400795.1| - 0.097 11.1 0.1 0.6 8.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain FecCD PF01032.13 gi|284162173|ref|YP_003400796.1| - 4e-94 314.9 30.6 4.9e-94 314.6 21.2 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|284162174|ref|YP_003400797.1| - 3.7e-36 124.4 0.0 5.2e-36 123.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_ubiq PF07706.7 gi|284162175|ref|YP_003400798.1| - 0.13 12.1 0.3 2.2 8.2 0.1 2.2 2 0 0 2 2 2 0 Aminotransferase ubiquitination site SSP160 PF06933.6 gi|284162175|ref|YP_003400798.1| - 0.15 10.0 7.7 0.17 9.8 5.3 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF3439 PF11921.3 gi|284162175|ref|YP_003400798.1| - 4.6 7.0 13.3 0.92 9.2 6.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3439) Gate PF07670.9 gi|284162177|ref|YP_003400800.1| - 1.1e-13 51.0 11.9 5.3e-08 32.7 0.1 2.5 2 1 0 2 2 2 2 Nucleoside recognition CobN-Mg_chel PF02514.11 gi|284162178|ref|YP_003400801.1| - 0 1171.0 0.0 0 1170.8 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase VWA_2 PF13519.1 gi|284162179|ref|YP_003400802.1| - 3.3e-14 53.3 0.0 1.6e-13 51.0 0.0 2.1 3 0 0 3 3 2 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|284162179|ref|YP_003400802.1| - 8.6e-12 44.6 0.1 1.4e-05 24.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|284162179|ref|YP_003400802.1| - 8.3e-09 35.2 0.0 0.0042 16.8 0.0 2.9 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|284162179|ref|YP_003400802.1| - 5.8e-07 28.6 0.9 0.00024 20.0 0.1 2.9 2 1 0 2 2 2 2 MCM2/3/5 family VWA PF00092.23 gi|284162179|ref|YP_003400802.1| - 3.4e-06 26.8 0.0 6.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_22 PF13401.1 gi|284162179|ref|YP_003400802.1| - 0.00072 19.7 0.1 0.0033 17.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain Mg_chelatase_2 PF13335.1 gi|284162179|ref|YP_003400802.1| - 0.00085 19.6 0.3 0.0024 18.2 0.2 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|284162179|ref|YP_003400802.1| - 0.00088 19.3 0.0 0.007 16.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|284162179|ref|YP_003400802.1| - 0.0012 19.0 0.0 0.0095 16.1 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|284162179|ref|YP_003400802.1| - 0.0017 17.8 0.0 0.0036 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF815 PF05673.8 gi|284162179|ref|YP_003400802.1| - 0.0031 16.4 0.0 0.015 14.2 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|284162179|ref|YP_003400802.1| - 0.0043 16.5 0.0 2.6 7.4 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF2828 PF11443.3 gi|284162179|ref|YP_003400802.1| - 0.0056 14.9 2.4 0.7 8.0 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF2828) Latrotoxin_C PF15658.1 gi|284162179|ref|YP_003400802.1| - 0.014 15.2 0.4 0.029 14.1 0.2 1.5 1 0 0 1 1 1 0 Latrotoxin C-terminal domain UPF0079 PF02367.12 gi|284162179|ref|YP_003400802.1| - 0.043 13.4 0.1 0.25 10.9 0.0 2.3 3 0 0 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 VWA_CoxE PF05762.9 gi|284162179|ref|YP_003400802.1| - 0.14 11.2 0.2 0.41 9.7 0.2 1.8 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein HTH_5 PF01022.15 gi|284162180|ref|YP_003400803.1| - 7e-11 41.6 1.0 1.4e-10 40.6 0.3 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|284162180|ref|YP_003400803.1| - 1.2e-08 34.6 0.0 1.7e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284162180|ref|YP_003400803.1| - 1e-07 31.1 0.2 1.6e-07 30.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284162180|ref|YP_003400803.1| - 4.4e-07 29.4 0.0 7.7e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284162180|ref|YP_003400803.1| - 9.1e-06 25.2 1.7 1.2e-05 24.9 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|284162180|ref|YP_003400803.1| - 9.3e-06 25.1 0.1 1.7e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|284162180|ref|YP_003400803.1| - 7.3e-05 22.6 0.6 0.00012 22.0 0.1 1.6 2 0 0 2 2 1 1 Sulfolobus plasmid regulatory protein HTH_27 PF13463.1 gi|284162180|ref|YP_003400803.1| - 0.00011 22.4 0.0 0.00019 21.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|284162180|ref|YP_003400803.1| - 0.00012 21.5 0.1 0.00022 20.8 0.1 1.3 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_10 PF04967.7 gi|284162180|ref|YP_003400803.1| - 0.0003 20.3 0.0 0.00059 19.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Penicillinase_R PF03965.11 gi|284162180|ref|YP_003400803.1| - 0.00037 20.5 0.1 0.00048 20.1 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_45 PF14947.1 gi|284162180|ref|YP_003400803.1| - 0.0013 18.5 0.1 0.0023 17.7 0.1 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|284162180|ref|YP_003400803.1| - 0.0014 18.3 0.1 0.0028 17.3 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|284162180|ref|YP_003400803.1| - 0.0015 18.5 0.6 0.004 17.1 0.1 1.8 1 1 1 2 2 2 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|284162180|ref|YP_003400803.1| - 0.0027 17.3 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) PaaX PF07848.7 gi|284162180|ref|YP_003400803.1| - 0.0056 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein B-block_TFIIIC PF04182.7 gi|284162180|ref|YP_003400803.1| - 0.012 15.4 0.0 0.018 14.9 0.0 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC DUF1495 PF07381.6 gi|284162180|ref|YP_003400803.1| - 0.014 15.0 2.2 0.38 10.4 0.1 2.7 1 1 2 3 3 3 0 Winged helix DNA-binding domain (DUF1495) Rrf2 PF02082.15 gi|284162180|ref|YP_003400803.1| - 0.02 15.0 0.5 0.039 14.0 0.1 1.6 2 0 0 2 2 2 0 Transcriptional regulator S10_plectin PF03501.10 gi|284162180|ref|YP_003400803.1| - 0.023 14.5 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Plectin/S10 domain HTH_AsnC-type PF13404.1 gi|284162180|ref|YP_003400803.1| - 0.032 13.7 0.2 0.066 12.7 0.1 1.5 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2250 PF10007.4 gi|284162180|ref|YP_003400803.1| - 0.035 14.0 1.0 2.2 8.2 0.4 2.5 2 1 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_12 PF08461.5 gi|284162180|ref|YP_003400803.1| - 0.036 13.7 0.0 0.16 11.7 0.0 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain FeoC PF09012.5 gi|284162180|ref|YP_003400803.1| - 0.039 13.6 0.0 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_35 PF13693.1 gi|284162180|ref|YP_003400803.1| - 0.042 13.6 0.1 0.09 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3116 PF11313.3 gi|284162180|ref|YP_003400803.1| - 0.046 13.3 0.4 0.14 11.7 0.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) PadR PF03551.9 gi|284162180|ref|YP_003400803.1| - 0.061 13.0 0.3 0.2 11.4 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF3671 PF12420.3 gi|284162180|ref|YP_003400803.1| - 0.088 12.7 2.3 0.12 12.3 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function TetR_N PF00440.18 gi|284162180|ref|YP_003400803.1| - 0.088 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_28 PF13518.1 gi|284162180|ref|YP_003400803.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284162180|ref|YP_003400803.1| - 0.12 12.3 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2513 PF10711.4 gi|284162180|ref|YP_003400803.1| - 0.13 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF2160 PF09928.4 gi|284162180|ref|YP_003400803.1| - 0.26 11.4 3.2 1.7 8.7 2.2 2.0 1 1 0 1 1 1 0 Predicted small integral membrane protein (DUF2160) DUF4227 PF14004.1 gi|284162180|ref|YP_003400803.1| - 5.3 6.9 5.7 11 5.8 3.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) MIG-14_Wnt-bd PF06664.7 gi|284162181|ref|YP_003400804.1| - 0.012 14.5 0.7 0.013 14.3 0.5 1.0 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion DUF1206 PF06724.6 gi|284162181|ref|YP_003400804.1| - 0.029 14.1 0.8 1 9.1 0.7 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) DUF1003 PF06210.6 gi|284162181|ref|YP_003400804.1| - 0.038 13.9 0.1 0.041 13.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) NKAIN PF05640.9 gi|284162181|ref|YP_003400804.1| - 0.073 12.0 2.9 0.11 11.4 2.0 1.3 1 1 0 1 1 1 0 Na,K-Atpase Interacting protein DUF1282 PF06930.7 gi|284162181|ref|YP_003400804.1| - 0.14 11.8 3.6 0.16 11.5 2.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1282) DUF4083 PF13314.1 gi|284162181|ref|YP_003400804.1| - 0.83 9.5 4.2 2.8 7.8 1.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) BtpA PF03437.10 gi|284162183|ref|YP_003400806.1| - 6.9e-89 297.4 0.0 7.7e-89 297.2 0.0 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|284162183|ref|YP_003400806.1| - 0.00021 19.9 0.0 0.00048 18.7 0.0 1.6 2 0 0 2 2 2 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|284162183|ref|YP_003400806.1| - 0.00058 19.1 0.2 0.021 14.0 0.0 2.5 2 1 1 3 3 3 2 PcrB family His_biosynth PF00977.16 gi|284162183|ref|YP_003400806.1| - 0.013 14.7 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein TMP-TENI PF02581.12 gi|284162183|ref|YP_003400806.1| - 0.05 12.7 0.1 0.28 10.2 0.0 2.1 2 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI PRAI PF00697.17 gi|284162183|ref|YP_003400806.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HTH_20 PF12840.2 gi|284162184|ref|YP_003400807.1| - 0.0002 21.0 0.0 0.00054 19.7 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284162184|ref|YP_003400807.1| - 0.00034 20.2 0.0 0.00048 19.7 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284162184|ref|YP_003400807.1| - 0.00038 19.7 0.0 0.0008 18.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284162184|ref|YP_003400807.1| - 0.0025 17.4 0.3 0.005 16.4 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF4423 PF14394.1 gi|284162184|ref|YP_003400807.1| - 0.0063 16.0 1.2 0.027 14.0 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) DUF494 PF04361.8 gi|284162184|ref|YP_003400807.1| - 0.011 15.4 0.0 0.014 15.0 0.0 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF494) HTH_IclR PF09339.5 gi|284162184|ref|YP_003400807.1| - 0.027 14.0 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain PRO8NT PF08082.6 gi|284162184|ref|YP_003400807.1| - 0.036 13.7 0.1 0.05 13.2 0.1 1.4 1 1 0 1 1 1 0 PRO8NT (NUC069), PrP8 N-terminal domain Rrf2 PF02082.15 gi|284162184|ref|YP_003400807.1| - 0.038 14.1 0.1 0.051 13.7 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.4 gi|284162184|ref|YP_003400807.1| - 0.042 13.7 0.6 0.14 12.0 0.2 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) SAB PF04382.8 gi|284162184|ref|YP_003400807.1| - 0.05 13.3 2.3 0.052 13.2 0.3 2.0 2 0 0 2 2 2 0 SAB domain FAE1_CUT1_RppA PF08392.7 gi|284162184|ref|YP_003400807.1| - 0.057 12.4 0.1 0.057 12.4 0.1 1.1 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein HTH_12 PF08461.5 gi|284162184|ref|YP_003400807.1| - 0.14 11.9 0.7 0.41 10.4 0.1 2.3 1 1 2 3 3 3 0 Ribonuclease R winged-helix domain KxDL PF10241.4 gi|284162184|ref|YP_003400807.1| - 0.5 10.2 2.3 9.7 6.1 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein Ribosomal_S13_N PF08069.7 gi|284162185|ref|YP_003400808.1| - 1.6e-30 104.6 0.4 3.1e-30 103.7 0.3 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|284162185|ref|YP_003400808.1| - 2.5e-18 65.5 1.2 3.6e-18 65.1 0.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 GatB_N PF02934.10 gi|284162186|ref|YP_003400809.1| - 3.8e-80 268.8 0.5 5.7e-80 268.2 0.4 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.9 gi|284162186|ref|YP_003400809.1| - 8.7e-20 70.6 0.6 4.9e-19 68.2 0.0 2.6 2 0 0 2 2 2 1 GAD domain GatB_Yqey PF02637.13 gi|284162186|ref|YP_003400809.1| - 1.7e-19 69.9 4.0 5.2e-19 68.4 2.8 1.8 1 0 0 1 1 1 1 GatB domain DUF1152 PF06626.7 gi|284162187|ref|YP_003400810.1| - 9.2e-80 267.9 1.1 1.1e-79 267.6 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) Endonuclease_5 PF04493.9 gi|284162188|ref|YP_003400811.1| - 2.3e-57 193.6 0.1 2.8e-57 193.3 0.1 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|284162188|ref|YP_003400811.1| - 0.00022 20.3 0.1 0.00033 19.8 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF99 ASCH PF04266.9 gi|284162189|ref|YP_003400812.1| - 6.5e-16 58.6 0.9 7.4e-16 58.4 0.7 1.0 1 0 0 1 1 1 1 ASCH domain DUF3850 PF12961.2 gi|284162189|ref|YP_003400812.1| - 0.0039 17.1 0.5 0.0039 17.1 0.3 1.5 2 0 0 2 2 2 1 Domain of Unknown Function with PDB structure (DUF3850) GNAT_acetyltr_2 PF13718.1 gi|284162190|ref|YP_003400813.1| - 1.5e-54 184.3 0.0 7.7e-54 182.0 0.0 2.1 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|284162190|ref|YP_003400813.1| - 2.5e-54 183.5 0.0 5.2e-54 182.5 0.0 1.5 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|284162190|ref|YP_003400813.1| - 1e-24 86.0 0.1 2.7e-23 81.4 0.0 3.3 4 0 0 4 4 4 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|284162190|ref|YP_003400813.1| - 3.8e-13 49.4 0.1 1e-12 48.0 0.0 1.8 2 0 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_7 PF13508.1 gi|284162190|ref|YP_003400813.1| - 9.5e-05 22.4 0.0 0.00045 20.3 0.0 2.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|284162190|ref|YP_003400813.1| - 0.0004 20.3 0.3 0.0036 17.2 0.0 2.7 4 0 0 4 4 4 1 Acetyltransferase (GNAT) family MerR PF00376.18 gi|284162190|ref|YP_003400813.1| - 0.0067 15.9 0.0 0.027 14.0 0.0 2.0 1 0 0 1 1 1 1 MerR family regulatory protein AAA_19 PF13245.1 gi|284162190|ref|YP_003400813.1| - 0.19 11.5 0.0 0.48 10.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Usp PF00582.21 gi|284162191|ref|YP_003400814.1| - 1.6e-37 128.8 4.1 5.5e-18 65.5 0.3 3.5 2 2 0 2 2 2 2 Universal stress protein family PcrB PF01884.12 gi|284162191|ref|YP_003400814.1| - 0.027 13.7 1.8 1.8 7.7 0.0 2.4 2 1 1 3 3 3 0 PcrB family ADH_zinc_N PF00107.21 gi|284162191|ref|YP_003400814.1| - 0.056 13.0 0.1 1.1 8.8 0.0 2.6 2 1 1 3 3 3 0 Zinc-binding dehydrogenase Glycos_transf_1 PF00534.15 gi|284162192|ref|YP_003400815.1| - 1.1e-08 34.7 0.0 3.5e-08 33.0 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284162192|ref|YP_003400815.1| - 1.4e-08 35.0 0.0 6.4e-08 32.8 0.0 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Aldo_ket_red PF00248.16 gi|284162192|ref|YP_003400815.1| - 0.01 14.6 0.0 0.017 13.9 0.0 1.3 1 0 0 1 1 1 0 Aldo/keto reductase family 5-FTHF_cyc-lig PF01812.15 gi|284162193|ref|YP_003400816.1| - 1.9e-21 76.6 0.0 2.3e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family T2SE_Nter PF05157.10 gi|284162193|ref|YP_003400816.1| - 0.067 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein E, N-terminal domain DUF35 PF01796.12 gi|284162194|ref|YP_003400817.1| - 7.2e-18 64.5 0.4 9.3e-18 64.2 0.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|284162194|ref|YP_003400817.1| - 7.4e-06 25.7 0.1 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_C PF02803.13 gi|284162195|ref|YP_003400818.1| - 2.9e-09 36.4 0.1 7.6e-09 35.0 0.1 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|284162195|ref|YP_003400818.1| - 7.7e-08 31.6 0.4 1.9e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|284162195|ref|YP_003400818.1| - 4.5e-06 26.3 2.0 1.2e-05 24.8 1.4 1.6 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain PapC_N PF13954.1 gi|284162196|ref|YP_003400819.1| - 0.026 14.0 0.3 0.069 12.7 0.2 1.6 1 1 0 1 1 1 0 PapC N-terminal domain DUF457 PF04307.9 gi|284162197|ref|YP_003400820.1| - 7.2e-21 74.1 11.5 9e-21 73.8 8.0 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) MtN3_slv PF03083.11 gi|284162197|ref|YP_003400820.1| - 0.0049 16.7 1.4 0.022 14.6 1.0 2.2 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange Oxidored_q3 PF00499.15 gi|284162197|ref|YP_003400820.1| - 1 9.1 20.3 3 7.6 14.1 1.8 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SecD_SecF PF02355.11 gi|284162197|ref|YP_003400820.1| - 2 7.5 8.4 0.06 12.5 0.9 2.0 3 0 0 3 3 3 0 Protein export membrane protein DUF1212 PF06738.7 gi|284162197|ref|YP_003400820.1| - 3.8 6.9 12.5 0.071 12.5 1.2 2.4 2 1 0 3 3 3 0 Protein of unknown function (DUF1212) CreD PF06123.7 gi|284162197|ref|YP_003400820.1| - 5.5 5.4 12.4 7.7 4.9 8.6 1.2 1 0 0 1 1 1 0 Inner membrane protein CreD FA_desaturase PF00487.19 gi|284162197|ref|YP_003400820.1| - 6.2 6.1 11.5 1.3 8.4 3.5 2.1 1 1 0 2 2 2 0 Fatty acid desaturase HSP20 PF00011.16 gi|284162198|ref|YP_003400821.1| - 3.6e-25 87.7 2.3 4.4e-25 87.5 1.6 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|284162198|ref|YP_003400821.1| - 0.0098 15.5 0.8 0.35 10.4 0.5 2.1 1 1 0 1 1 1 1 GvpH Phytase-like PF13449.1 gi|284162198|ref|YP_003400821.1| - 0.014 14.6 0.1 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 Esterase-like activity of phytase MCPsignal PF00015.16 gi|284162199|ref|YP_003400822.1| - 6.5e-50 169.6 45.5 1.1e-46 159.0 22.6 2.5 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Dak2 PF02734.12 gi|284162199|ref|YP_003400822.1| - 0.0078 15.9 23.3 0.21 11.2 0.7 4.1 1 1 3 4 4 4 2 DAK2 domain DUF948 PF06103.6 gi|284162199|ref|YP_003400822.1| - 0.023 14.5 22.2 1.3 8.9 0.9 5.3 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) SOR_SNZ PF01680.12 gi|284162199|ref|YP_003400822.1| - 0.12 12.0 11.8 1.2 8.6 4.7 3.6 1 1 2 3 3 3 0 SOR/SNZ family HAMP PF00672.20 gi|284162199|ref|YP_003400822.1| - 0.13 12.4 5.4 24 5.2 0.0 4.8 4 2 0 4 4 4 0 HAMP domain DUF489 PF04356.7 gi|284162199|ref|YP_003400822.1| - 0.14 11.7 18.3 0.017 14.7 3.5 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF489) Syntaxin PF00804.20 gi|284162199|ref|YP_003400822.1| - 0.28 11.3 33.1 2.9 8.0 2.9 4.2 1 1 3 4 4 4 0 Syntaxin ArdA PF07275.6 gi|284162199|ref|YP_003400822.1| - 0.32 11.2 15.9 0.059 13.6 0.8 3.1 1 1 1 3 3 3 0 Antirestriction protein (ArdA) DUF87 PF01935.12 gi|284162199|ref|YP_003400822.1| - 0.35 10.6 18.6 0.13 12.0 1.6 3.1 1 1 1 3 3 3 0 Domain of unknown function DUF87 TMP_2 PF06791.8 gi|284162199|ref|YP_003400822.1| - 0.7 9.4 27.6 0.94 9.0 6.2 3.5 1 1 1 3 3 3 0 Prophage tail length tape measure protein PhageMin_Tail PF10145.4 gi|284162199|ref|YP_003400822.1| - 0.83 9.2 22.8 0.24 11.0 4.2 2.8 1 1 0 2 2 2 0 Phage-related minor tail protein MscS_TM PF12794.2 gi|284162199|ref|YP_003400822.1| - 0.84 8.1 3.4 2.3 6.7 2.3 1.7 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 Sec20 PF03908.8 gi|284162199|ref|YP_003400822.1| - 0.99 9.1 20.3 0.62 9.7 1.1 4.9 2 2 3 5 5 5 0 Sec20 DUF3407 PF11887.3 gi|284162199|ref|YP_003400822.1| - 1.2 8.4 8.4 3.4 6.8 0.5 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3407) DUF2580 PF10824.3 gi|284162199|ref|YP_003400822.1| - 1.2 9.5 19.0 1.9 8.9 0.8 4.3 2 1 3 5 5 5 0 Protein of unknown function (DUF2580) HisK_N PF09385.5 gi|284162199|ref|YP_003400822.1| - 1.4 8.5 9.2 5.3 6.6 0.2 3.5 1 1 3 4 4 4 0 Histidine kinase N terminal DUF4041 PF13250.1 gi|284162199|ref|YP_003400822.1| - 1.7 8.2 12.0 1.1 8.8 0.1 4.7 5 0 0 5 5 4 0 Domain of unknown function (DUF4041) Vps53_N PF04100.7 gi|284162199|ref|YP_003400822.1| - 1.8 7.2 30.1 2.6 6.7 0.2 4.1 2 2 2 4 4 4 0 Vps53-like, N-terminal DUF1993 PF09351.5 gi|284162199|ref|YP_003400822.1| - 2.2 8.1 13.9 0.33 10.8 1.3 3.0 2 2 1 3 3 3 0 Domain of unknown function (DUF1993) DUF1664 PF07889.7 gi|284162199|ref|YP_003400822.1| - 2.5 7.9 22.7 2.8 7.7 2.2 4.3 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) GLE1 PF07817.8 gi|284162199|ref|YP_003400822.1| - 2.8 6.8 16.7 0.041 12.8 1.5 3.3 1 1 3 4 4 4 0 GLE1-like protein YjcZ PF13990.1 gi|284162199|ref|YP_003400822.1| - 3 6.8 17.4 1.3 8.0 3.1 3.1 1 1 1 3 3 3 0 YjcZ-like protein Spectrin PF00435.16 gi|284162199|ref|YP_003400822.1| - 3.2 8.0 23.2 2.7 8.3 1.6 4.9 1 1 4 5 5 5 0 Spectrin repeat DUF885 PF05960.6 gi|284162199|ref|YP_003400822.1| - 3.6 6.6 24.6 1.1 8.3 8.3 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF885) Laminin_II PF06009.7 gi|284162199|ref|YP_003400822.1| - 5 6.8 34.6 0.5 10.1 6.0 4.1 2 2 2 4 4 4 0 Laminin Domain II Fib_alpha PF08702.5 gi|284162199|ref|YP_003400822.1| - 5.5 7.1 24.1 2.3 8.3 3.2 4.1 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family Ribosomal_S17e PF00833.13 gi|284162201|ref|YP_003400824.1| - 4.4e-15 55.4 0.1 4.7e-15 55.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.17 gi|284162202|ref|YP_003400825.1| - 1.9e-100 335.2 0.0 2.1e-100 335.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ELFV_dehydrog PF00208.16 gi|284162202|ref|YP_003400825.1| - 0.0077 15.8 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AF0941-like PF14591.1 gi|284162203|ref|YP_003400826.1| - 6.1e-45 152.3 11.9 6.8e-45 152.2 8.3 1.0 1 0 0 1 1 1 1 AF0941-like GrpE PF01025.14 gi|284162203|ref|YP_003400826.1| - 0.00025 20.6 2.4 0.22 11.0 0.2 2.1 2 0 0 2 2 2 2 GrpE Baculo_PEP_C PF04513.7 gi|284162203|ref|YP_003400826.1| - 0.00054 19.7 0.2 0.011 15.4 0.0 2.0 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4298 PF14131.1 gi|284162203|ref|YP_003400826.1| - 0.0062 16.3 0.1 1.6 8.6 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4298) DivIC PF04977.10 gi|284162203|ref|YP_003400826.1| - 0.01 15.3 2.3 1.5 8.3 0.1 2.3 2 0 0 2 2 2 0 Septum formation initiator Ribosomal_S30AE PF02482.14 gi|284162203|ref|YP_003400826.1| - 0.015 15.7 1.8 0.029 14.8 1.3 1.5 1 1 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein PLU-1 PF08429.6 gi|284162203|ref|YP_003400826.1| - 0.02 13.8 0.4 0.025 13.5 0.3 1.1 1 0 0 1 1 1 0 PLU-1-like protein Apolipoprotein PF01442.13 gi|284162203|ref|YP_003400826.1| - 0.022 14.2 0.1 0.027 13.9 0.1 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF4279 PF14106.1 gi|284162203|ref|YP_003400826.1| - 0.025 14.4 0.6 0.36 10.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4279) POX PF07526.6 gi|284162203|ref|YP_003400826.1| - 0.026 14.7 0.2 0.029 14.5 0.2 1.1 1 0 0 1 1 1 0 Associated with HOX DUF904 PF06005.7 gi|284162203|ref|YP_003400826.1| - 0.028 14.7 1.1 0.028 14.7 0.8 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF904) Tektin PF03148.9 gi|284162203|ref|YP_003400826.1| - 0.031 12.8 0.1 0.04 12.4 0.1 1.1 1 0 0 1 1 1 0 Tektin family DUF4456 PF14644.1 gi|284162203|ref|YP_003400826.1| - 0.04 13.1 0.0 0.41 9.8 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4456) D123 PF07065.9 gi|284162203|ref|YP_003400826.1| - 0.041 12.9 2.4 0.069 12.2 1.7 1.3 1 1 0 1 1 1 0 D123 Prominin PF05478.6 gi|284162203|ref|YP_003400826.1| - 0.045 11.2 0.6 0.082 10.4 0.1 1.5 1 1 0 1 1 1 0 Prominin SecA_SW PF07516.8 gi|284162203|ref|YP_003400826.1| - 0.057 13.1 2.3 0.074 12.8 1.2 1.4 1 1 0 1 1 1 0 SecA Wing and Scaffold domain Globin PF00042.17 gi|284162203|ref|YP_003400826.1| - 0.057 13.7 0.1 0.89 9.9 0.0 2.1 2 0 0 2 2 2 0 Globin DUF2089 PF09862.4 gi|284162203|ref|YP_003400826.1| - 0.058 13.1 0.8 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) Fib_alpha PF08702.5 gi|284162203|ref|YP_003400826.1| - 0.1 12.6 1.9 0.22 11.6 1.1 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family YtxH PF12732.2 gi|284162203|ref|YP_003400826.1| - 0.11 12.8 2.3 4.9 7.5 0.1 2.2 2 0 0 2 2 2 0 YtxH-like protein CorA PF01544.13 gi|284162203|ref|YP_003400826.1| - 0.14 11.1 3.5 0.6 9.0 0.2 2.0 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF1884 PF08967.5 gi|284162203|ref|YP_003400826.1| - 0.2 11.7 6.5 4.1 7.5 0.2 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF1884) BLOC1_2 PF10046.4 gi|284162203|ref|YP_003400826.1| - 0.2 11.7 4.5 1.3 9.2 0.8 2.5 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG2 PF06148.6 gi|284162203|ref|YP_003400826.1| - 0.33 10.8 3.1 2.9 7.7 0.2 2.3 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 SpoU_sub_bind PF08032.7 gi|284162203|ref|YP_003400826.1| - 0.38 10.9 1.9 0.53 10.4 0.3 1.9 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding UBN2 PF14223.1 gi|284162203|ref|YP_003400826.1| - 0.46 10.2 4.3 1.5 8.6 0.3 2.2 1 1 0 2 2 2 0 gag-polypeptide of LTR copia-type Prefoldin_2 PF01920.15 gi|284162203|ref|YP_003400826.1| - 0.63 9.8 6.3 1.1 9.0 0.4 2.7 2 1 0 2 2 2 0 Prefoldin subunit VASP_tetra PF08776.6 gi|284162203|ref|YP_003400826.1| - 0.72 9.2 5.1 0.25 10.6 1.2 2.1 2 0 0 2 2 2 0 VASP tetramerisation domain NifU PF01106.12 gi|284162204|ref|YP_003400827.1| - 9e-27 92.6 0.3 1e-26 92.4 0.2 1.0 1 0 0 1 1 1 1 NifU-like domain AARP2CN PF08142.7 gi|284162204|ref|YP_003400827.1| - 0.022 14.2 0.0 0.029 13.9 0.0 1.1 1 0 0 1 1 1 0 AARP2CN (NUC121) domain DUF2695 PF10905.3 gi|284162205|ref|YP_003400828.1| - 2.8 7.7 4.9 1.4 8.6 0.8 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2695) TrkA_C PF02080.16 gi|284162206|ref|YP_003400829.1| - 1.8e-29 101.1 0.1 2.1e-13 49.6 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|284162206|ref|YP_003400829.1| - 1.7e-11 44.3 21.1 3.9e-10 40.0 2.5 2.9 4 0 0 4 4 4 2 PhoU domain TPPII PF12580.3 gi|284162206|ref|YP_003400829.1| - 0.092 12.0 0.9 0.4 9.9 0.2 2.0 1 1 1 2 2 2 0 Tripeptidyl peptidase II MtrB PF05440.7 gi|284162206|ref|YP_003400829.1| - 2.4 8.2 4.9 3.1 7.8 0.1 3.0 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B MttA_Hcf106 PF02416.11 gi|284162207|ref|YP_003400830.1| - 1e-11 43.7 0.1 1.3e-11 43.4 0.1 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family MttA_Hcf106 PF02416.11 gi|284162208|ref|YP_003400831.1| - 1.1e-16 59.6 3.3 1.6e-16 59.1 2.3 1.5 1 1 0 1 1 1 1 mttA/Hcf106 family Spore_III_AB PF09548.5 gi|284162208|ref|YP_003400831.1| - 0.0049 16.6 0.4 0.0074 16.0 0.2 1.2 1 0 0 1 1 1 1 Stage III sporulation protein AB (spore_III_AB) UPF0150 PF03681.10 gi|284162208|ref|YP_003400831.1| - 0.065 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) DUF892 PF05974.7 gi|284162208|ref|YP_003400831.1| - 0.087 12.6 1.0 0.11 12.2 0.7 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF892) IncA PF04156.9 gi|284162208|ref|YP_003400831.1| - 0.5 9.9 2.7 0.65 9.5 1.9 1.1 1 0 0 1 1 1 0 IncA protein eIF-5a PF01287.15 gi|284162209|ref|YP_003400832.1| - 8.8e-16 57.6 0.4 1.4e-15 56.9 0.3 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|284162209|ref|YP_003400832.1| - 0.001 18.8 0.0 0.0015 18.3 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|284162209|ref|YP_003400832.1| - 0.028 14.1 0.4 0.13 12.0 0.0 2.3 2 0 0 2 2 2 0 KOW motif EFP PF01132.15 gi|284162209|ref|YP_003400832.1| - 0.034 13.8 0.0 0.063 12.9 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Arginase PF00491.16 gi|284162210|ref|YP_003400833.1| - 3.5e-60 203.6 0.0 3.9e-60 203.5 0.0 1.0 1 0 0 1 1 1 1 Arginase family MobB PF03205.9 gi|284162212|ref|YP_003400835.1| - 0.00044 19.9 0.1 0.0017 18.0 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|284162212|ref|YP_003400835.1| - 0.0025 17.7 0.0 0.0089 15.9 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|284162212|ref|YP_003400835.1| - 0.015 15.4 0.0 0.033 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284162212|ref|YP_003400835.1| - 0.021 15.6 1.7 0.59 10.9 0.0 2.8 2 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|284162212|ref|YP_003400835.1| - 0.063 13.0 0.0 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 Dynamin family RNA_helicase PF00910.17 gi|284162212|ref|YP_003400835.1| - 0.15 12.2 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase GARS_A PF01071.14 gi|284162213|ref|YP_003400836.1| - 3.6e-74 248.5 0.1 5.6e-74 247.9 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|284162213|ref|YP_003400836.1| - 3e-32 111.0 0.1 6.3e-32 110.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|284162213|ref|YP_003400836.1| - 1.4e-20 73.2 0.1 3e-20 72.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|284162213|ref|YP_003400836.1| - 7.8e-07 29.0 0.1 2e-06 27.6 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|284162213|ref|YP_003400836.1| - 2.2e-06 26.6 0.0 2.2e-06 26.6 0.0 2.1 3 0 0 3 3 3 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|284162213|ref|YP_003400836.1| - 7.9e-06 25.8 0.0 2.6e-05 24.1 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|284162213|ref|YP_003400836.1| - 0.0012 18.3 0.1 0.0029 16.9 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|284162213|ref|YP_003400836.1| - 0.003 16.9 0.0 0.007 15.7 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain CoA_binding_3 PF13727.1 gi|284162213|ref|YP_003400836.1| - 0.085 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 CoA-binding domain ATP-grasp_5 PF13549.1 gi|284162213|ref|YP_003400836.1| - 0.1 11.8 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Bmp PF02608.9 gi|284162213|ref|YP_003400836.1| - 0.1 11.3 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 Basic membrane protein RimK PF08443.6 gi|284162213|ref|YP_003400836.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 RimK-like ATP-grasp domain FKBP_C PF00254.23 gi|284162214|ref|YP_003400837.1| - 9.6e-15 54.3 4.9 4.8e-14 52.1 3.2 2.3 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase PyrI PF01948.13 gi|284162214|ref|YP_003400837.1| - 0.063 13.3 1.9 1.1 9.3 0.1 3.0 1 1 2 3 3 3 0 Aspartate carbamoyltransferase regulatory chain, allosteric domain TrkA_C PF02080.16 gi|284162214|ref|YP_003400837.1| - 0.071 12.7 0.7 19 4.9 0.0 3.8 4 0 0 4 4 4 0 TrkA-C domain YqfQ PF14181.1 gi|284162214|ref|YP_003400837.1| - 0.47 10.4 7.7 0.8 9.7 5.4 1.3 1 0 0 1 1 1 0 YqfQ-like protein DUF4234 PF14018.1 gi|284162215|ref|YP_003400838.1| - 2.3e-16 59.3 1.3 2.3e-16 59.3 0.9 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4234) Yip1 PF04893.12 gi|284162215|ref|YP_003400838.1| - 0.042 13.3 0.3 0.042 13.3 0.2 2.8 2 1 1 3 3 3 0 Yip1 domain UcrQ PF02939.11 gi|284162215|ref|YP_003400838.1| - 0.23 11.2 1.6 6.1 6.7 0.4 2.7 2 0 0 2 2 2 0 UcrQ family DUF4131 PF13567.1 gi|284162215|ref|YP_003400838.1| - 0.78 9.1 7.9 1.7 8.0 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) UPF0179 PF03684.8 gi|284162216|ref|YP_003400839.1| - 3.9e-50 169.1 0.9 4.4e-50 168.9 0.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DUF523 PF04463.7 gi|284162217|ref|YP_003400840.1| - 6.2e-39 133.0 0.0 7e-39 132.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF523) Voltage_CLC PF00654.15 gi|284162218|ref|YP_003400841.1| - 3.4e-83 279.6 34.4 3.4e-83 279.6 23.9 1.8 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.23 gi|284162218|ref|YP_003400841.1| - 4.8e-35 119.0 3.4 8e-18 63.9 0.2 2.5 2 0 0 2 2 2 2 CBS domain Glycophorin_A PF01102.13 gi|284162218|ref|YP_003400841.1| - 6.6 6.5 7.8 18 5.0 0.3 2.4 2 0 0 2 2 2 0 Glycophorin A AAA PF00004.24 gi|284162219|ref|YP_003400842.1| - 2.4e-103 341.6 0.0 3.9e-51 172.6 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|284162219|ref|YP_003400842.1| - 6.4e-31 106.1 0.2 2.3e-30 104.3 0.1 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|284162219|ref|YP_003400842.1| - 1.5e-15 56.8 0.0 8.5e-08 31.5 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|284162219|ref|YP_003400842.1| - 2e-15 56.1 0.0 1.1e-14 53.8 0.0 2.2 2 1 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|284162219|ref|YP_003400842.1| - 2.4e-15 57.0 0.1 7e-07 29.4 0.0 3.4 3 1 0 3 3 3 2 AAA ATPase domain AAA_2 PF07724.9 gi|284162219|ref|YP_003400842.1| - 2.9e-15 56.5 0.0 3.5e-07 30.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|284162219|ref|YP_003400842.1| - 3.4e-14 53.1 0.7 0.00017 21.7 0.1 4.8 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|284162219|ref|YP_003400842.1| - 3.4e-14 53.7 3.1 5.2e-06 27.2 0.8 3.9 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|284162219|ref|YP_003400842.1| - 4.7e-14 52.3 0.2 3.5e-06 26.7 0.0 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|284162219|ref|YP_003400842.1| - 1.6e-12 47.4 0.0 1.4e-05 24.9 0.0 3.0 3 0 0 3 3 2 2 AAA domain TIP49 PF06068.8 gi|284162219|ref|YP_003400842.1| - 2.8e-11 42.7 2.9 7.9e-05 21.5 0.0 3.6 4 0 0 4 4 3 2 TIP49 C-terminus AAA_19 PF13245.1 gi|284162219|ref|YP_003400842.1| - 1.5e-09 37.4 0.7 0.0029 17.3 0.1 3.0 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|284162219|ref|YP_003400842.1| - 2.1e-09 36.7 0.0 0.0021 17.1 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|284162219|ref|YP_003400842.1| - 2.2e-09 37.3 0.0 0.00027 20.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|284162219|ref|YP_003400842.1| - 6.3e-09 35.8 1.1 0.0097 15.6 0.0 4.6 3 1 1 4 4 4 2 Archaeal ATPase AAA_18 PF13238.1 gi|284162219|ref|YP_003400842.1| - 1.9e-08 34.6 0.5 0.0042 17.3 0.0 3.4 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|284162219|ref|YP_003400842.1| - 2.3e-08 33.6 0.4 0.0026 17.1 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|284162219|ref|YP_003400842.1| - 3.6e-07 30.3 0.0 0.019 15.1 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.1 gi|284162219|ref|YP_003400842.1| - 8.6e-07 29.0 0.0 0.022 14.7 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|284162219|ref|YP_003400842.1| - 1.2e-06 28.0 8.6 0.24 10.7 0.1 4.5 2 2 2 4 4 4 2 AAA domain Mg_chelatase PF01078.16 gi|284162219|ref|YP_003400842.1| - 1.3e-06 27.7 0.4 0.049 12.7 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|284162219|ref|YP_003400842.1| - 3.5e-06 26.2 0.1 0.061 12.2 0.0 2.9 3 0 0 3 3 3 2 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.21 gi|284162219|ref|YP_003400842.1| - 4.5e-06 26.2 0.1 0.17 11.3 0.0 3.5 3 1 0 3 3 2 2 Sigma-54 interaction domain Cytidylate_kin2 PF13189.1 gi|284162219|ref|YP_003400842.1| - 7.7e-06 25.9 1.1 0.1 12.5 0.0 3.2 3 0 0 3 3 3 2 Cytidylate kinase-like family NB-ARC PF00931.17 gi|284162219|ref|YP_003400842.1| - 8.6e-06 24.8 0.2 0.24 10.2 0.0 3.3 3 1 0 3 3 3 2 NB-ARC domain AAA_3 PF07726.6 gi|284162219|ref|YP_003400842.1| - 1.2e-05 24.9 0.0 0.13 11.8 0.0 2.6 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|284162219|ref|YP_003400842.1| - 1.3e-05 24.9 1.0 0.16 11.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.5 gi|284162219|ref|YP_003400842.1| - 1.4e-05 24.8 0.3 0.014 15.3 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain DUF815 PF05673.8 gi|284162219|ref|YP_003400842.1| - 1.4e-05 24.1 0.0 0.063 12.1 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) SKI PF01202.17 gi|284162219|ref|YP_003400842.1| - 2e-05 24.5 0.7 0.12 12.2 0.0 3.0 3 0 0 3 3 2 2 Shikimate kinase ABC_tran PF00005.22 gi|284162219|ref|YP_003400842.1| - 2.4e-05 24.6 0.0 0.047 13.9 0.0 2.6 2 0 0 2 2 2 1 ABC transporter Sigma54_activ_2 PF14532.1 gi|284162219|ref|YP_003400842.1| - 2.6e-05 24.2 0.0 0.38 10.7 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|284162219|ref|YP_003400842.1| - 2.8e-05 23.1 0.1 0.19 10.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|284162219|ref|YP_003400842.1| - 5.8e-05 22.4 0.3 0.33 10.1 0.0 2.8 2 0 0 2 2 2 2 PhoH-like protein NTPase_1 PF03266.10 gi|284162219|ref|YP_003400842.1| - 7.8e-05 22.4 1.3 1.4 8.6 0.0 4.0 2 1 1 3 3 3 2 NTPase NACHT PF05729.7 gi|284162219|ref|YP_003400842.1| - 7.8e-05 22.3 0.2 2.6 7.6 0.0 3.9 3 1 1 4 4 4 1 NACHT domain KaiC PF06745.8 gi|284162219|ref|YP_003400842.1| - 0.00015 20.9 5.6 0.44 9.6 0.0 4.3 4 1 1 5 5 4 2 KaiC ResIII PF04851.10 gi|284162219|ref|YP_003400842.1| - 0.0002 21.2 0.0 0.2 11.4 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_11 PF13086.1 gi|284162219|ref|YP_003400842.1| - 0.00039 20.0 0.1 1 8.8 0.1 2.7 2 1 0 2 2 2 2 AAA domain Bac_DnaA PF00308.13 gi|284162219|ref|YP_003400842.1| - 0.00042 20.0 0.2 1.2 8.6 0.0 3.4 2 2 1 3 3 3 1 Bacterial dnaA protein AAA_30 PF13604.1 gi|284162219|ref|YP_003400842.1| - 0.00095 18.7 0.8 1.4 8.4 0.0 3.1 4 0 0 4 4 2 1 AAA domain UPF0079 PF02367.12 gi|284162219|ref|YP_003400842.1| - 0.0011 18.6 0.3 1.3 8.7 0.0 3.2 2 1 1 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|284162219|ref|YP_003400842.1| - 0.0039 16.1 0.0 2.2 7.0 0.0 2.6 2 1 0 2 2 2 1 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|284162219|ref|YP_003400842.1| - 0.014 14.8 0.0 2.9 7.3 0.0 2.4 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DEAD PF00270.24 gi|284162219|ref|YP_003400842.1| - 0.015 14.8 0.3 58 3.1 0.0 4.2 2 2 2 4 4 4 0 DEAD/DEAH box helicase MutS_III PF05192.13 gi|284162219|ref|YP_003400842.1| - 0.027 14.2 1.3 0.21 11.3 0.4 2.7 3 1 0 3 3 2 0 MutS domain III KTI12 PF08433.5 gi|284162219|ref|YP_003400842.1| - 0.032 13.4 0.2 11 5.1 0.0 3.0 3 0 0 3 3 3 0 Chromatin associated protein KTI12 MCM PF00493.18 gi|284162219|ref|YP_003400842.1| - 0.034 12.9 0.1 2.9 6.6 0.0 3.1 3 1 0 3 3 3 0 MCM2/3/5 family Cons_hypoth95 PF03602.10 gi|284162219|ref|YP_003400842.1| - 0.044 13.1 0.3 8.4 5.7 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical protein 95 IPT PF01745.11 gi|284162219|ref|YP_003400842.1| - 0.045 12.9 1.8 6.5 5.8 0.0 2.7 3 0 0 3 3 3 0 Isopentenyl transferase AAA_23 PF13476.1 gi|284162219|ref|YP_003400842.1| - 0.82 9.9 11.0 19 5.4 0.0 3.7 2 1 0 2 2 2 0 AAA domain PhoU PF01895.14 gi|284162219|ref|YP_003400842.1| - 1 9.8 6.4 0.55 10.7 1.7 2.7 2 1 0 2 2 1 0 PhoU domain AAA_21 PF13304.1 gi|284162219|ref|YP_003400842.1| - 9.5 6.0 7.8 62 3.4 0.1 4.0 3 1 1 4 4 4 0 AAA domain DUF111 PF01969.12 gi|284162220|ref|YP_003400843.1| - 6.1e-32 110.8 0.5 7.9e-32 110.5 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 RE_HindVP PF09519.5 gi|284162220|ref|YP_003400843.1| - 0.13 11.1 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 HindVP restriction endonuclease Rad51 PF08423.6 gi|284162221|ref|YP_003400844.1| - 1.2e-30 106.2 0.0 1.5e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|284162221|ref|YP_003400844.1| - 4.9e-16 58.7 0.0 6.7e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|284162221|ref|YP_003400844.1| - 1.1e-15 57.3 0.8 2e-15 56.5 0.5 1.4 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|284162221|ref|YP_003400844.1| - 1.9e-09 37.0 0.0 2e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|284162221|ref|YP_003400844.1| - 8.9e-06 25.2 0.4 0.00029 20.3 0.1 2.2 1 1 1 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|284162221|ref|YP_003400844.1| - 0.00023 20.1 0.8 0.0079 15.1 0.4 2.1 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_10 PF12846.2 gi|284162221|ref|YP_003400844.1| - 0.00044 19.7 0.4 0.021 14.2 0.1 2.2 1 1 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|284162221|ref|YP_003400844.1| - 0.00093 18.9 0.1 0.0027 17.3 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Zot PF05707.7 gi|284162221|ref|YP_003400844.1| - 0.0017 17.8 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) CbiA PF01656.18 gi|284162221|ref|YP_003400844.1| - 0.0018 17.6 0.4 0.003 17.0 0.3 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CobU PF02283.11 gi|284162221|ref|YP_003400844.1| - 0.0061 15.9 0.4 0.011 15.1 0.3 1.5 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase ATP-synt_ab PF00006.20 gi|284162221|ref|YP_003400844.1| - 0.0065 15.9 0.0 0.0077 15.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_35 PF14516.1 gi|284162221|ref|YP_003400844.1| - 0.0081 14.8 0.0 0.068 11.7 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain AAA_24 PF13479.1 gi|284162221|ref|YP_003400844.1| - 0.011 15.2 0.7 0.024 14.2 0.5 1.5 1 1 0 1 1 1 0 AAA domain TK PF00265.13 gi|284162221|ref|YP_003400844.1| - 0.014 14.9 0.7 0.022 14.2 0.5 1.4 1 1 0 1 1 1 0 Thymidine kinase AAA PF00004.24 gi|284162221|ref|YP_003400844.1| - 0.016 15.3 0.3 0.034 14.3 0.2 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|284162221|ref|YP_003400844.1| - 0.019 15.2 0.8 0.034 14.4 0.5 1.6 1 1 0 1 1 1 0 ABC transporter PhoH PF02562.11 gi|284162221|ref|YP_003400844.1| - 0.025 13.7 0.4 0.059 12.5 0.2 1.5 1 1 0 1 1 1 0 PhoH-like protein SRP54 PF00448.17 gi|284162221|ref|YP_003400844.1| - 0.029 13.8 0.2 0.035 13.5 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|284162221|ref|YP_003400844.1| - 0.036 13.7 0.2 0.053 13.2 0.1 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|284162221|ref|YP_003400844.1| - 0.037 14.8 0.8 0.15 12.8 0.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|284162221|ref|YP_003400844.1| - 0.043 13.9 0.8 0.12 12.4 0.5 1.8 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.1 gi|284162221|ref|YP_003400844.1| - 0.059 13.2 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|284162221|ref|YP_003400844.1| - 0.06 12.3 0.1 0.066 12.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PIF1 PF05970.9 gi|284162221|ref|YP_003400844.1| - 0.087 11.7 0.1 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase WXG100 PF06013.7 gi|284162222|ref|YP_003400845.1| - 8.4e-05 22.5 6.3 0.0022 17.9 0.2 4.4 2 2 0 3 3 3 1 Proteins of 100 residues with WXG Seryl_tRNA_N PF02403.17 gi|284162222|ref|YP_003400845.1| - 0.00033 20.6 48.3 0.0022 17.9 12.2 3.9 2 1 1 3 3 3 1 Seryl-tRNA synthetase N-terminal domain Myosin_tail_1 PF01576.14 gi|284162222|ref|YP_003400845.1| - 0.00054 17.8 22.0 0.00054 17.8 15.2 3.0 1 1 1 2 2 2 1 Myosin tail TPR_MLP1_2 PF07926.7 gi|284162222|ref|YP_003400845.1| - 0.00079 19.1 56.7 0.057 13.1 11.0 4.1 2 2 2 4 4 4 3 TPR/MLP1/MLP2-like protein AAA_13 PF13166.1 gi|284162222|ref|YP_003400845.1| - 0.0008 17.9 36.3 0.01 14.3 24.2 2.1 1 1 0 1 1 1 1 AAA domain CENP-Q PF13094.1 gi|284162222|ref|YP_003400845.1| - 0.0015 18.5 19.6 0.0015 18.5 13.6 3.0 1 1 1 2 2 1 1 CENP-Q, a CENPA-CAD centromere complex subunit NPV_P10 PF05531.7 gi|284162222|ref|YP_003400845.1| - 0.0017 18.5 5.6 7.9 6.8 0.0 4.3 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.6 gi|284162222|ref|YP_003400845.1| - 0.0021 18.4 29.4 0.026 14.9 3.9 4.1 1 1 2 3 3 3 1 Syntaxin 6, N-terminal DivIC PF04977.10 gi|284162222|ref|YP_003400845.1| - 0.0023 17.3 4.8 0.0023 17.3 3.3 5.8 1 1 2 4 4 3 1 Septum formation initiator Spc7 PF08317.6 gi|284162222|ref|YP_003400845.1| - 0.0035 16.0 46.6 0.0066 15.1 12.1 2.9 1 1 2 3 3 3 1 Spc7 kinetochore protein TBPIP PF07106.8 gi|284162222|ref|YP_003400845.1| - 0.0057 16.2 44.7 0.041 13.4 4.3 4.1 1 1 3 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Syntaxin_2 PF14523.1 gi|284162222|ref|YP_003400845.1| - 0.0076 16.2 27.1 0.38 10.7 6.5 3.3 2 1 1 3 3 3 2 Syntaxin-like protein Reo_sigmaC PF04582.7 gi|284162222|ref|YP_003400845.1| - 0.0081 15.3 0.1 0.62 9.1 0.0 2.4 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Cortex-I_coil PF09304.5 gi|284162222|ref|YP_003400845.1| - 0.0086 16.1 13.5 0.0086 16.1 9.4 4.2 1 1 3 4 4 4 1 Cortexillin I, coiled coil Laminin_I PF06008.9 gi|284162222|ref|YP_003400845.1| - 0.0094 15.2 35.3 0.19 11.0 19.5 2.8 1 1 1 2 2 2 2 Laminin Domain I PLU-1 PF08429.6 gi|284162222|ref|YP_003400845.1| - 0.01 14.7 27.9 0.079 11.8 5.2 3.1 1 1 2 3 3 3 2 PLU-1-like protein MCPsignal PF00015.16 gi|284162222|ref|YP_003400845.1| - 0.011 15.2 8.6 1.7 8.1 2.2 2.9 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Snapin_Pallidin PF14712.1 gi|284162222|ref|YP_003400845.1| - 0.011 15.9 39.2 0.34 11.2 2.2 5.2 2 2 3 5 5 5 0 Snapin/Pallidin DUF4200 PF13863.1 gi|284162222|ref|YP_003400845.1| - 0.012 15.5 64.2 0.23 11.4 8.3 4.2 1 1 3 4 4 4 0 Domain of unknown function (DUF4200) Phage_GP20 PF06810.6 gi|284162222|ref|YP_003400845.1| - 0.016 14.6 4.5 0.016 14.6 3.1 4.2 1 1 2 4 4 4 0 Phage minor structural protein GP20 DUF2353 PF09789.4 gi|284162222|ref|YP_003400845.1| - 0.016 14.4 9.9 0.016 14.4 6.8 3.2 1 1 2 3 3 1 0 Uncharacterized coiled-coil protein (DUF2353) Laminin_II PF06009.7 gi|284162222|ref|YP_003400845.1| - 0.02 14.6 30.1 0.84 9.3 3.5 3.3 1 1 2 3 3 3 0 Laminin Domain II Mnd1 PF03962.10 gi|284162222|ref|YP_003400845.1| - 0.022 14.4 48.6 0.29 10.7 7.1 3.6 1 1 1 3 3 3 0 Mnd1 family ESAG1 PF03238.8 gi|284162222|ref|YP_003400845.1| - 0.04 13.1 0.3 0.088 12.0 0.2 1.6 1 0 0 1 1 1 0 ESAG protein DUF1664 PF07889.7 gi|284162222|ref|YP_003400845.1| - 0.077 12.7 26.0 4.4 7.1 3.7 4.3 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|284162222|ref|YP_003400845.1| - 0.083 10.7 37.0 0.25 9.1 18.2 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF948 PF06103.6 gi|284162222|ref|YP_003400845.1| - 0.092 12.6 12.4 2.4 8.0 0.8 4.5 2 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) T4SS PF07996.6 gi|284162222|ref|YP_003400845.1| - 0.11 12.3 14.5 0.12 12.1 2.9 3.1 2 1 0 2 2 2 0 Type IV secretion system proteins GAS PF13851.1 gi|284162222|ref|YP_003400845.1| - 0.12 11.5 59.3 0.25 10.4 14.3 2.9 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding HTH_DeoR PF08220.7 gi|284162222|ref|YP_003400845.1| - 0.15 11.6 3.5 0.61 9.6 0.0 3.4 3 1 0 3 3 3 0 DeoR-like helix-turn-helix domain FUSC PF04632.7 gi|284162222|ref|YP_003400845.1| - 0.22 9.9 17.7 0.022 13.2 4.1 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family BicD PF09730.4 gi|284162222|ref|YP_003400845.1| - 0.3 9.3 40.4 0.012 13.9 9.7 3.0 1 1 1 2 2 2 0 Microtubule-associated protein Bicaudal-D DUF2935 PF11155.3 gi|284162222|ref|YP_003400845.1| - 0.31 11.1 20.9 4.2 7.4 6.4 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF2935) WEMBL PF05701.6 gi|284162222|ref|YP_003400845.1| - 0.32 9.4 49.1 0.033 12.6 14.2 2.4 1 1 1 2 2 2 0 Weak chloroplast movement under blue light Filament PF00038.16 gi|284162222|ref|YP_003400845.1| - 0.32 10.3 51.5 0.25 10.7 20.2 3.1 1 1 2 3 3 3 0 Intermediate filament protein DUF1474 PF07342.6 gi|284162222|ref|YP_003400845.1| - 0.34 11.1 19.3 0.056 13.6 5.6 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1474) TMPIT PF07851.8 gi|284162222|ref|YP_003400845.1| - 0.4 9.7 33.7 0.073 12.1 5.5 3.0 2 1 1 3 3 3 0 TMPIT-like protein CagA PF03507.8 gi|284162222|ref|YP_003400845.1| - 0.49 10.2 9.5 2.1 8.1 1.5 2.8 1 1 1 3 3 3 0 CagA exotoxin DUF1771 PF08590.5 gi|284162222|ref|YP_003400845.1| - 0.5 10.4 17.7 0.14 12.2 4.4 3.8 3 2 1 4 4 3 0 Domain of unknown function (DUF1771) Talin_middle PF09141.5 gi|284162222|ref|YP_003400845.1| - 0.51 10.0 2.9 1.1 8.9 0.0 2.6 3 0 0 3 3 3 0 Talin, middle domain HrpB4 PF09502.5 gi|284162222|ref|YP_003400845.1| - 0.54 9.3 2.6 0.88 8.7 1.0 2.1 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB4) Effector_1 PF04518.7 gi|284162222|ref|YP_003400845.1| - 0.59 9.0 20.4 0.28 10.1 4.3 2.6 2 1 0 2 2 2 0 Effector from type III secretion system EzrA PF06160.7 gi|284162222|ref|YP_003400845.1| - 0.62 8.1 38.7 1.2 7.1 4.6 2.7 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA BLOC1_2 PF10046.4 gi|284162222|ref|YP_003400845.1| - 0.64 10.1 33.5 2 8.5 1.8 4.5 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tht1 PF04163.7 gi|284162222|ref|YP_003400845.1| - 0.78 8.0 9.8 0.035 12.5 1.7 1.9 1 1 0 1 1 1 0 Tht1-like nuclear fusion protein CENP-F_leu_zip PF10473.4 gi|284162222|ref|YP_003400845.1| - 0.98 9.2 57.2 0.82 9.5 17.0 3.5 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin_2 PF01920.15 gi|284162222|ref|YP_003400845.1| - 1.1 9.0 51.1 2.7 7.8 7.1 5.5 1 1 2 4 4 4 0 Prefoldin subunit DUF773 PF05600.7 gi|284162222|ref|YP_003400845.1| - 1.1 7.8 32.9 0.11 11.3 8.8 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF773) DUF972 PF06156.8 gi|284162222|ref|YP_003400845.1| - 1.2 9.5 42.8 0.61 10.4 9.9 4.3 1 1 3 4 4 4 0 Protein of unknown function (DUF972) AAA_27 PF13514.1 gi|284162222|ref|YP_003400845.1| - 1.2 6.7 46.4 0.041 11.5 10.5 2.5 1 1 1 2 2 2 0 AAA domain Rootletin PF15035.1 gi|284162222|ref|YP_003400845.1| - 1.7 8.6 49.4 0.34 10.8 13.8 2.4 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion FlgN PF05130.7 gi|284162222|ref|YP_003400845.1| - 1.8 8.7 38.4 0.71 10.1 6.8 3.7 1 1 2 3 3 3 0 FlgN protein Occludin_ELL PF07303.8 gi|284162222|ref|YP_003400845.1| - 1.9 9.2 43.4 0.25 12.0 7.8 4.4 1 1 3 4 4 4 0 Occludin homology domain APG6 PF04111.7 gi|284162222|ref|YP_003400845.1| - 3 6.8 54.0 0.18 10.8 13.9 3.1 1 1 2 3 3 3 0 Autophagy protein Apg6 PspA_IM30 PF04012.7 gi|284162222|ref|YP_003400845.1| - 3.1 7.0 46.7 0.36 10.1 13.1 3.1 1 1 1 3 3 3 0 PspA/IM30 family IncA PF04156.9 gi|284162222|ref|YP_003400845.1| - 3.6 7.1 56.3 7.9 6.0 6.2 3.3 1 1 2 3 3 2 0 IncA protein ADIP PF11559.3 gi|284162222|ref|YP_003400845.1| - 4.2 7.2 47.5 2.7 7.8 9.0 4.0 1 1 4 5 5 5 0 Afadin- and alpha -actinin-Binding V-SNARE PF05008.10 gi|284162222|ref|YP_003400845.1| - 4.3 7.5 54.6 0.58 10.3 6.2 5.6 1 1 5 6 6 6 0 Vesicle transport v-SNARE protein N-terminus Hormone_1 PF00103.15 gi|284162222|ref|YP_003400845.1| - 4.5 6.5 22.0 0.28 10.4 3.1 4.0 1 1 2 4 4 4 0 Somatotropin hormone family MscS_porin PF12795.2 gi|284162222|ref|YP_003400845.1| - 4.7 6.4 36.2 2.9 7.1 0.8 4.0 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain Ish1 PF10281.4 gi|284162222|ref|YP_003400845.1| - 5 7.2 9.5 59 3.8 0.1 4.1 3 1 0 3 3 3 0 Putative stress-responsive nuclear envelope protein Spectrin PF00435.16 gi|284162222|ref|YP_003400845.1| - 6.8 7.0 37.1 2.2 8.5 5.7 4.0 1 1 4 5 5 5 0 Spectrin repeat HOOK PF05622.7 gi|284162222|ref|YP_003400845.1| - 6.9 4.3 47.2 12 3.4 32.3 1.6 1 1 0 1 1 1 0 HOOK protein TPR_7 PF13176.1 gi|284162222|ref|YP_003400845.1| - 7 6.7 10.4 10 6.2 0.3 4.9 4 2 2 6 6 3 0 Tetratricopeptide repeat YvrJ PF12841.2 gi|284162222|ref|YP_003400845.1| - 7.7 5.8 7.1 30 3.9 0.0 4.0 4 0 0 4 4 4 0 YvrJ protein family DUF3450 PF11932.3 gi|284162222|ref|YP_003400845.1| - 9 5.4 31.4 8.2 5.6 11.0 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) TrkA_N PF02254.13 gi|284162223|ref|YP_003400846.1| - 6.3e-30 103.5 0.4 1.2e-29 102.6 0.3 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|284162223|ref|YP_003400846.1| - 1.8e-19 69.1 0.4 4.9e-19 67.6 0.0 1.9 2 0 0 2 2 2 1 TrkA-C domain Ion_trans_2 PF07885.11 gi|284162223|ref|YP_003400846.1| - 7.7e-14 51.1 11.7 1.3e-13 50.4 8.1 1.4 1 0 0 1 1 1 1 Ion channel ADH_zinc_N PF00107.21 gi|284162223|ref|YP_003400846.1| - 8.4e-07 28.5 0.8 0.038 13.5 0.1 2.9 2 1 0 2 2 2 2 Zinc-binding dehydrogenase NAD_binding_2 PF03446.10 gi|284162223|ref|YP_003400846.1| - 0.00039 20.3 0.8 0.001 18.9 0.1 1.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase MTS PF05175.9 gi|284162223|ref|YP_003400846.1| - 0.00054 19.3 0.1 0.0012 18.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|284162223|ref|YP_003400846.1| - 0.0013 18.3 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284162223|ref|YP_003400846.1| - 0.0028 18.2 0.0 0.0053 17.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain NAD_binding_10 PF13460.1 gi|284162223|ref|YP_003400846.1| - 0.0044 17.0 0.1 0.01 15.8 0.1 1.7 2 0 0 2 2 2 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|284162223|ref|YP_003400846.1| - 0.01 15.5 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_25 PF13649.1 gi|284162223|ref|YP_003400846.1| - 0.045 14.1 0.0 0.077 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284162223|ref|YP_003400846.1| - 0.055 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284162223|ref|YP_003400846.1| - 0.078 13.4 0.0 0.19 12.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain TPP_enzyme_M PF00205.17 gi|284162223|ref|YP_003400846.1| - 0.1 12.3 0.0 0.87 9.3 0.0 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Toprim_4 PF13662.1 gi|284162224|ref|YP_003400847.1| - 3.3e-07 30.2 0.1 4.9e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|284162224|ref|YP_003400847.1| - 8.4e-06 25.6 0.1 7.8e-05 22.5 0.1 2.1 1 1 0 1 1 1 1 Toprim domain PyrI PF01948.13 gi|284162225|ref|YP_003400848.1| - 4.4e-36 122.7 3.8 6e-36 122.3 2.7 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|284162225|ref|YP_003400848.1| - 5.1e-16 57.8 3.3 1.1e-15 56.8 2.3 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-CHCC PF10276.4 gi|284162225|ref|YP_003400848.1| - 0.0029 17.4 0.1 0.0049 16.6 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain DUF164 PF02591.10 gi|284162225|ref|YP_003400848.1| - 0.0055 16.5 0.8 0.019 14.7 0.1 2.1 2 0 0 2 2 2 1 Putative zinc ribbon domain zf-BED PF02892.10 gi|284162225|ref|YP_003400848.1| - 0.12 12.1 0.7 0.22 11.2 0.5 1.4 1 0 0 1 1 1 0 BED zinc finger OTCace_N PF02729.16 gi|284162226|ref|YP_003400849.1| - 8.7e-52 174.5 0.0 1.8e-51 173.5 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|284162226|ref|YP_003400849.1| - 3.8e-40 137.3 0.0 7.1e-40 136.4 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF373 PF04123.8 gi|284162227|ref|YP_003400850.1| - 3e-106 355.3 10.9 3.5e-106 355.1 7.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Metallophos_2 PF12850.2 gi|284162228|ref|YP_003400851.1| - 6.4e-09 35.8 0.8 9.8e-09 35.2 0.6 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|284162228|ref|YP_003400851.1| - 1.8e-07 30.7 5.3 3.1e-07 29.9 3.7 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Aminotran_1_2 PF00155.16 gi|284162229|ref|YP_003400852.1| - 1.7e-67 227.9 0.0 1.9e-67 227.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II RNaseH_C PF09293.5 gi|284162229|ref|YP_003400852.1| - 0.087 12.7 0.2 0.24 11.2 0.1 1.7 1 0 0 1 1 1 0 T4 RNase H, C terminal Citrate_synt PF00285.16 gi|284162230|ref|YP_003400853.1| - 1.5e-134 448.2 0.0 1.6e-134 448.1 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase Glycos_trans_3N PF02885.12 gi|284162231|ref|YP_003400854.1| - 1.2e-15 56.8 0.1 3.2e-15 55.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.8 gi|284162231|ref|YP_003400854.1| - 1.3e-12 46.9 2.1 2.2e-12 46.2 0.1 2.4 3 0 0 3 3 3 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|284162231|ref|YP_003400854.1| - 1.4e-10 40.9 4.4 1.2e-09 38.0 1.6 2.8 2 2 0 2 2 2 1 Glycosyl transferase family, a/b domain Molydop_binding PF01568.16 gi|284162231|ref|YP_003400854.1| - 0.00045 20.0 0.1 0.016 15.0 0.0 2.4 1 1 1 2 2 2 1 Molydopterin dinucleotide binding domain Biotin_lipoyl_2 PF13533.1 gi|284162231|ref|YP_003400854.1| - 0.002 17.7 0.1 0.018 14.6 0.1 2.5 1 1 0 1 1 1 1 Biotin-lipoyl like CDC48_N PF02359.13 gi|284162231|ref|YP_003400854.1| - 0.025 14.5 0.0 0.067 13.1 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain DUF3725 PF12523.3 gi|284162231|ref|YP_003400854.1| - 0.18 11.8 0.2 25 5.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3725) tRNA_deacylase PF04414.7 gi|284162232|ref|YP_003400855.1| - 2.4e-67 226.2 0.3 2.8e-67 225.9 0.2 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DctQ PF04290.7 gi|284162233|ref|YP_003400856.1| - 0.01 15.5 2.4 0.013 15.2 1.7 1.1 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Yip1 PF04893.12 gi|284162233|ref|YP_003400856.1| - 0.034 13.6 3.6 0.037 13.5 2.5 1.1 1 0 0 1 1 1 0 Yip1 domain DUF2371 PF10177.4 gi|284162233|ref|YP_003400856.1| - 0.08 12.8 7.3 0.8 9.5 0.6 2.1 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2371) Neurensin PF14927.1 gi|284162233|ref|YP_003400856.1| - 0.08 12.3 0.4 0.12 11.7 0.3 1.3 1 0 0 1 1 1 0 Neurensin Phage_Coat_B PF05356.6 gi|284162233|ref|YP_003400856.1| - 0.096 12.3 0.5 0.096 12.3 0.3 2.1 1 1 1 2 2 2 0 Phage Coat protein B DUF4307 PF14155.1 gi|284162233|ref|YP_003400856.1| - 0.11 12.2 3.5 0.52 10.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) EIID-AGA PF03613.9 gi|284162233|ref|YP_003400856.1| - 0.14 11.0 3.8 0.17 10.8 2.7 1.1 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component DUF4064 PF13273.1 gi|284162233|ref|YP_003400856.1| - 0.25 11.4 5.8 0.34 11.0 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) EphA2_TM PF14575.1 gi|284162233|ref|YP_003400856.1| - 0.33 11.3 1.5 1.5 9.2 0.0 2.0 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain Dispanin PF04505.7 gi|284162233|ref|YP_003400856.1| - 0.4 10.2 4.7 0.41 10.2 2.4 1.6 1 1 1 2 2 2 0 Interferon-induced transmembrane protein Phage_holin_1 PF04531.8 gi|284162233|ref|YP_003400856.1| - 1.3 9.1 4.7 2.5 8.2 0.2 2.0 1 1 1 2 2 2 0 Bacteriophage holin Lon_2 PF13337.1 gi|284162235|ref|YP_003400858.1| - 4.6e-16 58.2 0.1 7.9e-16 57.4 0.0 1.3 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease HTH_38 PF13936.1 gi|284162235|ref|YP_003400858.1| - 0.0023 17.4 0.0 0.014 14.8 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|284162235|ref|YP_003400858.1| - 0.025 14.4 0.0 0.13 12.1 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Terminase_5 PF06056.7 gi|284162235|ref|YP_003400858.1| - 0.039 13.4 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Peptidase_C23 PF05379.6 gi|284162236|ref|YP_003400859.1| - 0.00038 20.3 0.1 0.00053 19.9 0.1 1.2 1 0 0 1 1 1 1 Carlavirus endopeptidase Rbsn PF11464.3 gi|284162236|ref|YP_003400859.1| - 0.017 14.6 1.1 4 7.0 0.2 2.5 2 1 0 2 2 2 0 Rabenosyn Rab binding domain FlaC_arch PF05377.6 gi|284162236|ref|YP_003400859.1| - 0.05 13.5 0.8 0.1 12.5 0.5 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) RHH_1 PF01402.16 gi|284162238|ref|YP_003400861.1| - 1.9e-09 37.0 0.1 2.4e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|284162238|ref|YP_003400861.1| - 1.4e-07 31.1 0.0 1.7e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain RepB-RCR_reg PF10723.4 gi|284162238|ref|YP_003400861.1| - 0.0065 16.1 0.0 0.0073 16.0 0.0 1.2 1 0 0 1 1 1 1 Replication regulatory protein RepB DUF3354 PF11834.3 gi|284162238|ref|YP_003400861.1| - 0.088 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3354) HTH_24 PF13412.1 gi|284162239|ref|YP_003400862.1| - 0.00018 20.8 0.1 0.0011 18.3 0.1 2.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284162239|ref|YP_003400862.1| - 0.0045 17.2 0.1 0.086 13.1 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain CTP_transf_3 PF02348.14 gi|284162239|ref|YP_003400862.1| - 0.023 14.3 0.1 0.044 13.4 0.0 1.5 2 0 0 2 2 2 0 Cytidylyltransferase HTH_34 PF13601.1 gi|284162239|ref|YP_003400862.1| - 0.035 14.1 0.1 0.48 10.4 0.1 2.6 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|284162239|ref|YP_003400862.1| - 0.051 13.3 0.2 0.29 10.9 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain HemN_C PF06969.11 gi|284162239|ref|YP_003400862.1| - 0.1 12.7 0.0 0.84 9.7 0.0 2.6 2 0 0 2 2 2 0 HemN C-terminal domain DUF3864 PF12980.2 gi|284162240|ref|YP_003400863.1| - 0.077 13.1 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3864) CBS PF00571.23 gi|284162241|ref|YP_003400864.1| - 5.7e-29 99.6 6.6 4e-11 42.5 0.0 4.6 5 0 0 5 5 5 4 CBS domain MFS_1 PF07690.11 gi|284162241|ref|YP_003400864.1| - 1.5e-27 96.2 65.0 2.2e-18 66.1 24.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|284162241|ref|YP_003400864.1| - 6.7e-27 94.1 41.2 8.4e-18 64.1 11.0 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|284162241|ref|YP_003400864.1| - 6e-07 28.2 20.3 6e-07 28.2 14.1 2.8 1 1 2 3 3 3 3 MFS/sugar transport protein ATG22 PF11700.3 gi|284162241|ref|YP_003400864.1| - 0.0028 16.2 27.2 0.044 12.2 2.7 3.3 2 1 1 3 3 3 3 Vacuole effluxer Atg22 like EamA PF00892.15 gi|284162242|ref|YP_003400865.1| - 1.6e-37 128.3 39.4 5.8e-20 71.5 9.8 2.6 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|284162242|ref|YP_003400865.1| - 0.00017 21.7 5.8 0.00017 21.7 4.0 3.9 1 1 3 4 4 4 2 Multidrug resistance efflux transporter Radical_SAM PF04055.16 gi|284162243|ref|YP_003400866.1| - 7.4e-27 94.5 1.0 2.1e-26 93.0 0.1 2.1 3 0 0 3 3 3 1 Radical SAM superfamily UPF0004 PF00919.15 gi|284162243|ref|YP_003400866.1| - 2.2e-21 75.5 0.5 4.3e-21 74.5 0.4 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|284162243|ref|YP_003400866.1| - 7.2e-10 38.5 0.2 1.5e-09 37.5 0.1 1.5 1 0 0 1 1 1 1 TRAM domain B12-binding PF02310.14 gi|284162243|ref|YP_003400866.1| - 0.07 13.0 0.2 1.5 8.7 0.0 2.5 2 1 0 2 2 2 0 B12 binding domain Reovirus_Mu2 PF07781.6 gi|284162243|ref|YP_003400866.1| - 0.13 10.1 0.0 0.19 9.6 0.0 1.2 1 0 0 1 1 1 0 Reovirus minor core protein Mu-2 DHH PF01368.15 gi|284162244|ref|YP_003400867.1| - 5.9e-16 58.4 0.4 9.2e-16 57.7 0.3 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|284162244|ref|YP_003400867.1| - 1.2e-15 56.9 2.4 1.2e-15 56.9 1.7 2.2 3 0 0 3 3 3 1 DHHA1 domain GatB_N PF02934.10 gi|284162245|ref|YP_003400868.1| - 0.073 11.9 0.0 0.085 11.6 0.0 1.0 1 0 0 1 1 1 0 GatB/GatE catalytic domain TF_Zn_Ribbon PF08271.7 gi|284162246|ref|YP_003400869.1| - 3.2e-08 32.7 1.8 5.9e-08 31.9 1.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|284162246|ref|YP_003400869.1| - 0.00012 22.3 0.1 0.00015 22.0 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|284162246|ref|YP_003400869.1| - 0.00041 20.0 0.3 0.00063 19.4 0.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284162246|ref|YP_003400869.1| - 0.0073 16.2 1.9 2.7 8.0 0.2 2.3 2 0 0 2 2 2 2 Zinc ribbon domain Elf1 PF05129.8 gi|284162246|ref|YP_003400869.1| - 0.025 14.2 0.1 0.025 14.2 0.1 1.8 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like A2L_zn_ribbon PF08792.5 gi|284162246|ref|YP_003400869.1| - 0.034 13.5 4.0 0.26 10.8 2.8 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.2 gi|284162246|ref|YP_003400869.1| - 0.043 13.6 0.4 0.077 12.8 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon RRN7 PF11781.3 gi|284162246|ref|YP_003400869.1| - 0.05 13.1 3.0 0.91 9.0 2.1 2.3 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-Mss51 PF13824.1 gi|284162246|ref|YP_003400869.1| - 0.062 13.1 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TFIIS_C PF01096.13 gi|284162246|ref|YP_003400869.1| - 0.13 11.8 2.0 8.6 6.0 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) eIF-5_eIF-2B PF01873.12 gi|284162246|ref|YP_003400869.1| - 0.15 11.7 0.6 0.2 11.3 0.1 1.4 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zf-ribbon_3 PF13248.1 gi|284162246|ref|YP_003400869.1| - 0.15 11.3 1.6 2.1 7.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|284162246|ref|YP_003400869.1| - 0.27 11.1 4.0 7.4 6.5 0.6 2.4 2 0 0 2 2 2 0 Rubredoxin DUF35_N PF12172.3 gi|284162246|ref|YP_003400869.1| - 0.29 11.1 1.5 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.4 gi|284162246|ref|YP_003400869.1| - 0.29 10.8 3.2 4.8 6.9 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|284162246|ref|YP_003400869.1| - 0.41 10.3 3.4 0.34 10.5 0.7 2.0 2 1 0 2 2 2 0 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.7 gi|284162246|ref|YP_003400869.1| - 0.69 9.7 3.8 1.2 8.9 0.1 2.6 3 0 0 3 3 3 0 PhnA Zinc-Ribbon Prim_Zn_Ribbon PF08273.7 gi|284162246|ref|YP_003400869.1| - 0.85 9.7 6.4 6.4 6.9 4.4 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Nudix_N_2 PF14803.1 gi|284162246|ref|YP_003400869.1| - 1.2 8.8 3.8 20 4.9 2.7 2.2 1 1 0 1 1 1 0 Nudix N-terminal Zn_ribbon_recom PF13408.1 gi|284162246|ref|YP_003400869.1| - 2.5 8.4 5.1 10 6.5 3.1 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-H2C2_2 PF13465.1 gi|284162246|ref|YP_003400869.1| - 4.9 7.6 5.5 11 6.4 0.1 2.6 3 0 0 3 3 2 0 Zinc-finger double domain GTP_cyclohydro2 PF00925.15 gi|284162247|ref|YP_003400870.1| - 4.6e-68 227.7 0.0 6.3e-68 227.2 0.0 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase II DHBP_synthase PF00926.14 gi|284162247|ref|YP_003400870.1| - 4.2e-30 104.4 0.0 9.9e-30 103.2 0.0 1.6 1 1 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase ALO PF04030.9 gi|284162250|ref|YP_003400873.1| - 0.042 13.4 0.1 0.042 13.4 0.0 1.0 1 0 0 1 1 1 0 D-arabinono-1,4-lactone oxidase Rrf2 PF02082.15 gi|284162251|ref|YP_003400874.1| - 0.00038 20.5 0.1 0.00087 19.3 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|284162251|ref|YP_003400874.1| - 0.008 15.5 0.4 0.021 14.2 0.5 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284162251|ref|YP_003400874.1| - 0.017 14.8 0.3 0.025 14.2 0.2 1.2 1 0 0 1 1 1 0 MarR family Sld5 PF05916.6 gi|284162251|ref|YP_003400874.1| - 0.033 14.4 0.1 0.037 14.3 0.1 1.2 1 0 0 1 1 1 0 GINS complex protein Trm56 PF01994.11 gi|284162251|ref|YP_003400874.1| - 0.052 13.2 0.3 0.065 12.9 0.2 1.1 1 0 0 1 1 1 0 tRNA ribose 2'-O-methyltransferase, aTrm56 DUF4582 PF15189.1 gi|284162251|ref|YP_003400874.1| - 0.054 12.7 0.1 0.058 12.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4582) HTH_19 PF12844.2 gi|284162251|ref|YP_003400874.1| - 0.13 12.2 0.3 0.2 11.7 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|284162251|ref|YP_003400874.1| - 0.51 9.8 2.2 12 5.3 0.3 2.1 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RHH_3 PF12651.2 gi|284162252|ref|YP_003400875.1| - 0.083 12.6 0.3 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain PIN PF01850.16 gi|284162253|ref|YP_003400876.1| - 0.00016 21.9 0.0 0.00034 20.9 0.0 1.6 1 1 0 1 1 1 1 PIN domain RHH_3 PF12651.2 gi|284162254|ref|YP_003400877.1| - 0.00019 21.1 1.1 0.00019 21.1 0.7 2.7 3 1 0 3 3 3 1 Ribbon-helix-helix domain DUF4007 PF13182.1 gi|284162254|ref|YP_003400877.1| - 0.012 14.4 0.4 0.013 14.2 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4007) DUF1651 PF07864.6 gi|284162254|ref|YP_003400877.1| - 0.025 14.6 0.3 0.035 14.1 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1651) DUF1024 PF06260.7 gi|284162254|ref|YP_003400877.1| - 0.072 13.2 3.0 0.55 10.4 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1024) Colicin PF01024.14 gi|284162254|ref|YP_003400877.1| - 0.075 12.6 1.8 0.094 12.2 1.2 1.1 1 0 0 1 1 1 0 Colicin pore forming domain EntA_Immun PF08951.5 gi|284162254|ref|YP_003400877.1| - 0.096 12.8 3.9 1.6 8.9 0.1 2.1 1 1 1 2 2 2 0 Enterocin A Immunity Phi-29_GP4 PF05464.6 gi|284162254|ref|YP_003400877.1| - 0.097 12.5 1.1 5.1 7.0 0.1 2.1 1 1 1 2 2 2 0 Phi-29-like late genes activator (early protein GP4) Pox_VLTF3 PF04947.9 gi|284162254|ref|YP_003400877.1| - 0.43 10.0 4.3 1.4 8.3 2.9 1.9 1 1 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like DUF217 PF02697.9 gi|284162254|ref|YP_003400877.1| - 1.2 9.4 9.5 3.3 8.0 6.6 1.8 1 1 0 1 1 1 0 Uncharacterized ACR, COG1753 OrfB_Zn_ribbon PF07282.6 gi|284162256|ref|YP_003400879.1| - 7.6e-20 70.3 0.0 1.6e-19 69.3 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OmpH PF03938.9 gi|284162256|ref|YP_003400879.1| - 0.27 11.1 4.1 10 6.0 2.8 2.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Resolvase PF00239.16 gi|284162257|ref|YP_003400880.1| - 3.4e-23 82.0 0.1 1.9e-22 79.6 0.2 2.0 2 1 0 2 2 2 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|284162257|ref|YP_003400880.1| - 1.6e-09 37.8 0.2 3.3e-09 36.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DEAD PF00270.24 gi|284162257|ref|YP_003400880.1| - 0.068 12.6 0.1 0.63 9.5 0.0 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase HTH_28 PF13518.1 gi|284162257|ref|YP_003400880.1| - 0.09 12.7 0.2 0.25 11.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|284162257|ref|YP_003400880.1| - 0.099 12.3 0.0 0.24 11.1 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain OsmC PF02566.14 gi|284162257|ref|YP_003400880.1| - 0.12 12.5 0.0 6.4 7.0 0.0 2.2 2 0 0 2 2 2 0 OsmC-like protein Catalase-rel PF06628.7 gi|284162260|ref|YP_003400883.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 Catalase-related immune-responsive VWA_2 PF13519.1 gi|284162261|ref|YP_003400884.1| - 3.5e-05 23.9 0.0 0.00018 21.6 0.0 2.1 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|284162261|ref|YP_003400884.1| - 5.8e-05 22.3 0.1 0.00018 20.7 0.1 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|284162261|ref|YP_003400884.1| - 0.055 13.1 0.0 2 8.1 0.0 2.3 1 1 0 1 1 1 0 von Willebrand factor type A domain DUF728 PF05304.7 gi|284162262|ref|YP_003400885.1| - 0.098 12.8 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF728) ThiF PF00899.16 gi|284162263|ref|YP_003400886.1| - 5.2e-11 42.5 0.0 7.8e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 ThiF family MGDG_synth PF06925.6 gi|284162263|ref|YP_003400886.1| - 0.086 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase B5 PF03484.10 gi|284162264|ref|YP_003400887.1| - 0.096 12.5 0.0 0.26 11.1 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetase B5 domain Herpes_UL52 PF03121.10 gi|284162265|ref|YP_003400888.1| - 0.014 15.1 0.1 0.014 15.1 0.1 2.0 2 1 0 2 2 2 0 Herpesviridae UL52/UL70 DNA primase PCAF_N PF06466.6 gi|284162265|ref|YP_003400888.1| - 0.018 14.3 1.6 0.029 13.6 1.1 1.3 1 0 0 1 1 1 0 PCAF (P300/CBP-associated factor) N-terminal domain zf-ribbon_3 PF13248.1 gi|284162265|ref|YP_003400888.1| - 0.036 13.2 0.3 0.036 13.2 0.2 3.1 2 1 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|284162265|ref|YP_003400888.1| - 0.064 13.2 11.1 2.6 8.0 0.0 3.5 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.2 gi|284162265|ref|YP_003400888.1| - 0.074 12.8 9.5 1.1 9.0 0.0 2.7 2 1 0 2 2 2 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|284162265|ref|YP_003400888.1| - 0.2 11.3 17.2 1.3 8.7 0.0 3.3 3 0 0 3 3 3 0 Nudix N-terminal NOB1_Zn_bind PF08772.6 gi|284162265|ref|YP_003400888.1| - 0.73 9.7 0.0 0.73 9.7 0.0 3.2 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-piccolo PF05715.8 gi|284162265|ref|YP_003400888.1| - 0.82 9.7 7.9 0.37 10.8 3.1 2.1 1 1 1 2 2 2 0 Piccolo Zn-finger zinc_ribbon_2 PF13240.1 gi|284162265|ref|YP_003400888.1| - 1.6 8.3 14.9 1.1 8.8 1.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|284162265|ref|YP_003400888.1| - 2.2 8.1 12.1 1.3 8.8 2.6 2.5 1 1 1 2 2 2 0 Cysteine-rich CPXCG Rad10 PF03834.9 gi|284162266|ref|YP_003400889.1| - 0.0099 15.5 0.1 0.031 13.9 0.0 1.7 2 0 0 2 2 2 1 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) Mrr_N PF14338.1 gi|284162266|ref|YP_003400889.1| - 0.11 12.6 0.0 0.46 10.6 0.0 2.1 2 0 0 2 2 2 0 Mrr N-terminal domain AAA_14 PF13173.1 gi|284162267|ref|YP_003400890.1| - 2.9e-06 27.1 0.2 6.4e-06 26.0 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|284162267|ref|YP_003400890.1| - 0.00035 20.7 0.3 0.072 13.2 0.2 2.5 1 1 0 1 1 1 1 AAA domain HTH_5 PF01022.15 gi|284162267|ref|YP_003400890.1| - 0.013 15.1 0.0 0.19 11.4 0.0 2.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family AAA_16 PF13191.1 gi|284162267|ref|YP_003400890.1| - 0.014 15.3 0.0 0.92 9.4 0.0 2.3 1 1 1 2 2 2 0 AAA ATPase domain AsiA PF09010.5 gi|284162267|ref|YP_003400890.1| - 0.02 14.7 0.0 0.044 13.6 0.0 1.6 1 0 0 1 1 1 0 Anti-Sigma Factor A Arch_ATPase PF01637.13 gi|284162267|ref|YP_003400890.1| - 0.036 13.7 0.2 0.036 13.7 0.2 2.1 2 0 0 2 2 2 0 Archaeal ATPase AAA PF00004.24 gi|284162267|ref|YP_003400890.1| - 0.069 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mrr_cat PF04471.7 gi|284162267|ref|YP_003400890.1| - 0.076 12.8 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Restriction endonuclease DUF234 PF03008.9 gi|284162267|ref|YP_003400890.1| - 2.9 8.0 9.7 14 5.8 4.3 3.1 2 1 0 2 2 2 0 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|284162268|ref|YP_003400891.1| - 0.0007 19.4 0.0 0.00095 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284162269|ref|YP_003400892.1| - 3.5e-11 43.4 0.0 2.6e-10 40.6 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|284162269|ref|YP_003400892.1| - 7.9e-11 42.2 0.0 1.6e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284162269|ref|YP_003400892.1| - 2.3e-08 34.3 0.0 3.9e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|284162269|ref|YP_003400892.1| - 5.1e-07 29.6 0.1 1.4e-05 24.8 0.1 2.3 1 1 0 1 1 1 1 Archaeal ATPase DUF815 PF05673.8 gi|284162269|ref|YP_003400892.1| - 0.0012 17.8 0.0 0.002 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DEAD PF00270.24 gi|284162269|ref|YP_003400892.1| - 0.02 14.3 0.2 6.7 6.1 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase IstB_IS21 PF01695.12 gi|284162269|ref|YP_003400892.1| - 0.021 14.2 0.0 0.82 9.0 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.7 gi|284162269|ref|YP_003400892.1| - 0.037 13.6 0.0 0.065 12.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|284162269|ref|YP_003400892.1| - 0.039 13.8 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|284162269|ref|YP_003400892.1| - 0.058 12.9 0.0 0.093 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|284162269|ref|YP_003400892.1| - 0.07 12.8 0.1 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|284162269|ref|YP_003400892.1| - 0.098 12.3 0.3 0.37 10.4 0.2 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Pox_A32 PF04665.7 gi|284162269|ref|YP_003400892.1| - 0.12 11.6 0.1 1.5 8.0 0.0 2.4 3 0 0 3 3 3 0 Poxvirus A32 protein Zn_ribbon_recom PF13408.1 gi|284162270|ref|YP_003400893.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain AAA_22 PF13401.1 gi|284162271|ref|YP_003400894.1| - 2e-06 27.9 0.0 4.3e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|284162271|ref|YP_003400894.1| - 2.7e-05 23.9 0.0 4.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Cdc6_C PF09079.6 gi|284162271|ref|YP_003400894.1| - 0.0004 20.0 0.0 0.0012 18.5 0.0 1.9 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|284162271|ref|YP_003400894.1| - 0.0018 18.4 0.1 0.0062 16.7 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|284162271|ref|YP_003400894.1| - 0.0051 16.5 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain UvrD-helicase PF00580.16 gi|284162271|ref|YP_003400894.1| - 0.026 13.8 0.0 0.11 11.7 0.0 1.8 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_16 PF13191.1 gi|284162271|ref|YP_003400894.1| - 0.068 13.1 0.1 0.59 10.0 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain KaiC PF06745.8 gi|284162271|ref|YP_003400894.1| - 0.11 11.6 1.0 7.7 5.5 0.0 2.3 1 1 1 2 2 2 0 KaiC RcbX PF02341.10 gi|284162271|ref|YP_003400894.1| - 0.12 12.4 0.2 21 5.2 0.0 2.5 2 0 0 2 2 2 0 RbcX protein RHH_1 PF01402.16 gi|284162272|ref|YP_003400895.1| - 0.021 14.6 3.6 0.18 11.7 0.0 3.6 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family Syntaxin_2 PF14523.1 gi|284162272|ref|YP_003400895.1| - 0.068 13.2 0.1 7.9 6.5 0.0 2.3 2 0 0 2 2 2 0 Syntaxin-like protein TerB-N PF13208.1 gi|284162272|ref|YP_003400895.1| - 0.14 11.5 0.5 0.26 10.6 0.4 1.4 1 0 0 1 1 1 0 TerB-N V-SNARE PF05008.10 gi|284162272|ref|YP_003400895.1| - 0.24 11.5 2.2 0.59 10.3 0.2 2.3 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus IF2_N PF04760.10 gi|284162272|ref|YP_003400895.1| - 0.38 10.4 5.5 3.3 7.4 0.2 3.6 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region UPF0175 PF03683.8 gi|284162274|ref|YP_003400897.1| - 4.6e-14 51.6 0.1 6.2e-14 51.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|284162274|ref|YP_003400897.1| - 5e-08 32.5 2.0 1.6e-06 27.7 0.8 2.8 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family HTH_28 PF13518.1 gi|284162274|ref|YP_003400897.1| - 0.013 15.4 0.0 1.5 8.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284162274|ref|YP_003400897.1| - 0.02 14.4 0.1 3 7.4 0.0 2.7 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|284162274|ref|YP_003400897.1| - 0.063 12.9 0.1 2.6 7.7 0.0 2.4 1 1 1 2 2 2 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|284162274|ref|YP_003400897.1| - 0.081 12.1 0.0 0.69 9.1 0.0 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 RelB PF04221.7 gi|284162274|ref|YP_003400897.1| - 0.14 11.9 0.1 0.31 10.8 0.1 1.5 1 1 0 2 2 2 0 RelB antitoxin GCV_H PF01597.14 gi|284162275|ref|YP_003400898.1| - 0.0034 17.0 0.2 0.0039 16.8 0.2 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein UPF0175 PF03683.8 gi|284162276|ref|YP_003400899.1| - 8.6e-14 50.7 1.1 1.6e-13 49.9 0.6 1.6 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0175) DUF3306 PF11748.3 gi|284162276|ref|YP_003400899.1| - 0.049 14.3 0.0 0.071 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3306) DUF3368 PF11848.3 gi|284162277|ref|YP_003400900.1| - 0.1 12.1 0.1 0.36 10.4 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3368) UPF0175 PF03683.8 gi|284162278|ref|YP_003400901.1| - 2e-13 49.6 1.8 2.6e-13 49.2 1.3 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|284162278|ref|YP_003400901.1| - 0.00077 19.2 0.9 0.00077 19.2 0.7 2.9 3 1 1 4 4 4 1 Ribbon-helix-helix protein, copG family SurA_N PF09312.6 gi|284162278|ref|YP_003400901.1| - 0.017 14.9 0.5 2 8.3 0.0 2.1 1 1 1 2 2 2 0 SurA N-terminal domain RHH_4 PF13467.1 gi|284162278|ref|YP_003400901.1| - 0.06 13.2 0.1 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain DUF3368 PF11848.3 gi|284162279|ref|YP_003400902.1| - 0.00024 20.5 0.1 0.00079 18.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) PIN PF01850.16 gi|284162279|ref|YP_003400902.1| - 0.026 14.8 0.1 0.038 14.3 0.0 1.2 1 0 0 1 1 1 0 PIN domain UPF0175 PF03683.8 gi|284162280|ref|YP_003400903.1| - 2.1e-17 62.3 1.2 3.1e-17 61.8 0.8 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|284162280|ref|YP_003400903.1| - 1.3e-10 40.6 3.7 4.6e-10 38.9 0.4 2.3 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|284162280|ref|YP_003400903.1| - 0.01 15.5 2.0 0.014 15.0 0.4 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix domain HTH_psq PF05225.11 gi|284162280|ref|YP_003400903.1| - 0.081 12.4 0.1 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Propep_M14 PF02244.11 gi|284162280|ref|YP_003400903.1| - 0.11 12.2 0.2 7.1 6.3 0.0 2.6 1 1 1 2 2 2 0 Carboxypeptidase activation peptide IF2_N PF04760.10 gi|284162280|ref|YP_003400903.1| - 0.43 10.2 3.3 0.87 9.2 1.3 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Resolvase PF00239.16 gi|284162281|ref|YP_003400904.1| - 4.3e-27 94.7 0.0 1.1e-26 93.3 0.0 1.6 2 0 0 2 2 2 1 Resolvase, N terminal domain Glyco_hydro_97 PF10566.4 gi|284162281|ref|YP_003400904.1| - 4.7e-05 22.6 0.4 0.002 17.2 0.0 2.1 2 0 0 2 2 2 2 Glycoside hydrolase 97 TINF2_N PF14973.1 gi|284162281|ref|YP_003400904.1| - 0.082 13.0 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus UPF0175 PF03683.8 gi|284162282|ref|YP_003400905.1| - 2.5e-18 65.2 2.2 3.6e-18 64.7 1.5 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|284162282|ref|YP_003400905.1| - 0.0056 16.5 2.1 0.04 13.8 0.2 2.9 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family DUF3368 PF11848.3 gi|284162283|ref|YP_003400906.1| - 5.1e-13 48.3 1.1 4.9e-11 42.0 0.1 3.0 4 0 0 4 4 4 2 Domain of unknown function (DUF3368) Amidohydro_3 PF07969.6 gi|284162284|ref|YP_003400907.1| - 2.3e-96 323.5 0.0 2.6e-96 323.2 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|284162284|ref|YP_003400907.1| - 2e-10 40.8 0.0 2.4e-09 37.3 0.0 2.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|284162284|ref|YP_003400907.1| - 3.1e-10 39.7 0.0 1.2e-09 37.7 0.0 2.0 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|284162284|ref|YP_003400907.1| - 5.5e-07 29.8 0.0 0.00013 22.1 0.0 2.6 3 0 0 3 3 3 2 Amidohydrolase FliG_C PF01706.11 gi|284162284|ref|YP_003400907.1| - 0.12 12.3 0.1 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 FliG C-terminal domain HAD_2 PF13419.1 gi|284162285|ref|YP_003400908.1| - 6.4e-18 65.5 0.0 8.5e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284162285|ref|YP_003400908.1| - 5.9e-07 30.1 0.0 0.0094 16.3 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284162285|ref|YP_003400908.1| - 4.2e-05 23.8 0.0 7e-05 23.0 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|284162285|ref|YP_003400908.1| - 0.018 14.1 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 Putative Phosphatase Arch_ATPase PF01637.13 gi|284162286|ref|YP_003400909.1| - 1.1e-23 84.1 6.4 1.1e-23 84.1 4.4 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_35 PF14516.1 gi|284162286|ref|YP_003400909.1| - 1.4e-07 30.4 0.1 4.1e-07 28.9 0.1 1.7 1 1 0 1 1 1 1 AAA-like domain AAA_14 PF13173.1 gi|284162286|ref|YP_003400909.1| - 1.3e-06 28.3 0.2 0.0029 17.4 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284162286|ref|YP_003400909.1| - 8.4e-05 22.6 0.0 0.00018 21.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|284162286|ref|YP_003400909.1| - 0.0021 18.2 0.0 0.019 15.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284162286|ref|YP_003400909.1| - 0.047 13.8 0.1 0.29 11.3 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SieB PF14163.1 gi|284162286|ref|YP_003400909.1| - 0.13 11.8 0.6 4.4 6.8 0.0 2.6 3 0 0 3 3 3 0 Superinfection exclusion protein B Radical_SAM PF04055.16 gi|284162287|ref|YP_003400910.1| - 1.3e-19 70.9 0.0 1.9e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284162287|ref|YP_003400910.1| - 1.1e-05 25.5 0.0 1.7e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284162287|ref|YP_003400910.1| - 2.1e-05 24.4 0.0 3.4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1028 PF06267.7 gi|284162289|ref|YP_003400912.1| - 2.5e-59 199.9 0.0 2.8e-59 199.7 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) KaiC PF06745.8 gi|284162290|ref|YP_003400913.1| - 6.2e-12 45.1 1.7 3.3e-11 42.7 1.2 1.8 1 1 0 1 1 1 1 KaiC NB-ARC PF00931.17 gi|284162290|ref|YP_003400913.1| - 4.7e-06 25.6 1.1 9.8e-06 24.6 0.2 1.8 1 1 1 2 2 2 1 NB-ARC domain DUF835 PF05763.7 gi|284162290|ref|YP_003400913.1| - 9.9e-06 25.1 4.4 6.8e-05 22.4 0.9 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF835) AAA_22 PF13401.1 gi|284162290|ref|YP_003400913.1| - 2e-05 24.7 0.1 8.1e-05 22.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|284162290|ref|YP_003400913.1| - 9.9e-05 20.8 0.8 0.00014 20.3 0.6 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.4 gi|284162290|ref|YP_003400913.1| - 0.00011 21.2 0.1 0.00023 20.2 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.1 gi|284162290|ref|YP_003400913.1| - 0.001 19.3 0.6 0.0033 17.7 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|284162290|ref|YP_003400913.1| - 0.0011 18.6 0.4 0.01 15.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284162290|ref|YP_003400913.1| - 0.0012 18.3 0.4 0.013 14.9 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|284162290|ref|YP_003400913.1| - 0.0027 17.8 0.4 0.0051 17.0 0.2 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.13 gi|284162290|ref|YP_003400913.1| - 0.0028 17.2 0.1 0.0075 15.8 0.0 1.7 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|284162290|ref|YP_003400913.1| - 0.0064 16.1 0.5 0.039 13.5 0.0 2.3 2 1 0 2 2 2 1 NACHT domain AAA_14 PF13173.1 gi|284162290|ref|YP_003400913.1| - 0.0091 15.8 0.8 0.066 13.1 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|284162290|ref|YP_003400913.1| - 0.018 14.7 0.1 0.058 13.1 0.0 2.0 1 1 0 1 1 1 0 Part of AAA domain Herpes_Helicase PF02689.9 gi|284162290|ref|YP_003400913.1| - 0.019 12.7 0.0 0.092 10.4 0.0 1.8 1 1 1 2 2 2 0 Helicase RNA_helicase PF00910.17 gi|284162290|ref|YP_003400913.1| - 0.019 15.1 0.1 0.11 12.6 0.0 2.3 2 2 1 3 3 3 0 RNA helicase AAA_16 PF13191.1 gi|284162290|ref|YP_003400913.1| - 0.023 14.6 0.1 0.07 13.1 0.0 1.8 1 1 0 2 2 2 0 AAA ATPase domain cobW PF02492.14 gi|284162290|ref|YP_003400913.1| - 0.026 13.9 0.0 0.054 12.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|284162290|ref|YP_003400913.1| - 0.03 13.4 0.0 0.058 12.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.1 gi|284162290|ref|YP_003400913.1| - 0.092 12.3 0.0 0.17 11.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284162290|ref|YP_003400913.1| - 0.095 13.5 0.0 0.2 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|284162290|ref|YP_003400913.1| - 0.15 12.0 0.9 0.24 11.3 0.6 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|284162290|ref|YP_003400913.1| - 0.26 11.0 2.2 0.61 9.7 0.0 2.5 2 2 1 3 3 3 0 NTPase T4_Gp59_C PF08994.5 gi|284162290|ref|YP_003400913.1| - 0.99 9.5 3.9 1.7 8.8 0.1 2.6 2 1 0 2 2 2 0 T4 gene Gp59 loader of gp41 DNA helicase C-term HxlR PF01638.12 gi|284162291|ref|YP_003400914.1| - 2.2e-08 33.6 0.3 3.1e-08 33.1 0.2 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|284162291|ref|YP_003400914.1| - 0.00092 18.9 0.5 0.0015 18.3 0.3 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix PadR PF03551.9 gi|284162291|ref|YP_003400914.1| - 0.026 14.3 0.2 0.047 13.4 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Cas_Csn2 PF09711.5 gi|284162293|ref|YP_003400916.1| - 0.035 13.7 2.9 0.038 13.6 2.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csn2) An_peroxidase PF03098.10 gi|284162294|ref|YP_003400917.1| - 0.047 12.0 0.0 0.047 12.0 0.0 1.0 1 0 0 1 1 1 0 Animal haem peroxidase AAA_14 PF13173.1 gi|284162295|ref|YP_003400918.1| - 1.8e-10 40.8 0.4 7.3e-10 38.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284162295|ref|YP_003400918.1| - 4.6e-07 30.0 0.3 5.2e-05 23.4 0.2 2.5 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|284162295|ref|YP_003400918.1| - 2.3e-05 24.1 5.2 0.01 15.5 0.1 2.8 2 1 0 3 3 3 2 Archaeal ATPase AAA PF00004.24 gi|284162295|ref|YP_003400918.1| - 0.0021 18.2 0.0 0.0058 16.8 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TrmB PF01978.14 gi|284162295|ref|YP_003400918.1| - 0.006 16.2 0.0 0.015 14.9 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA_16 PF13191.1 gi|284162295|ref|YP_003400918.1| - 0.008 16.1 0.2 0.72 9.8 0.1 2.3 1 1 0 2 2 2 1 AAA ATPase domain TK PF00265.13 gi|284162295|ref|YP_003400918.1| - 0.087 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Thymidine kinase Viral_helicase1 PF01443.13 gi|284162295|ref|YP_003400918.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase STT3 PF02516.9 gi|284162296|ref|YP_003400919.1| - 8.4e-60 203.0 32.7 1.5e-59 202.2 22.7 1.3 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Glycos_transf_2 PF00535.21 gi|284162297|ref|YP_003400920.1| - 2e-28 99.1 0.0 3.8e-28 98.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284162297|ref|YP_003400920.1| - 5.7e-09 36.1 0.0 7.3e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|284162297|ref|YP_003400920.1| - 0.00018 20.6 0.0 0.00031 19.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|284162297|ref|YP_003400920.1| - 0.081 12.2 0.0 0.68 9.1 0.0 2.3 1 1 1 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.15 gi|284162298|ref|YP_003400921.1| - 6.1e-36 123.4 0.0 8.5e-36 122.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284162298|ref|YP_003400921.1| - 6e-19 68.5 0.0 1.3e-18 67.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284162298|ref|YP_003400921.1| - 1.7e-13 50.7 0.0 2.7e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|284162298|ref|YP_003400921.1| - 1.1e-06 28.8 0.0 2.1e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Epimerase_2 PF02350.14 gi|284162298|ref|YP_003400921.1| - 4e-06 25.8 0.0 5.2e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_2 PF13524.1 gi|284162298|ref|YP_003400921.1| - 1.6e-05 25.1 0.0 3.1e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|284162298|ref|YP_003400921.1| - 0.0088 15.8 0.1 0.017 14.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like NTP_transferase PF00483.18 gi|284162299|ref|YP_003400922.1| - 2.7e-54 184.0 0.0 3.3e-54 183.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|284162299|ref|YP_003400922.1| - 8.7e-08 32.4 0.0 1.2e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.7 gi|284162299|ref|YP_003400922.1| - 0.00042 18.9 1.0 0.0058 15.2 1.0 2.2 2 1 0 2 2 2 1 L-fucokinase Hexapep PF00132.19 gi|284162299|ref|YP_003400922.1| - 0.0029 17.0 18.5 0.036 13.5 1.6 5.5 3 2 2 5 5 5 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|284162299|ref|YP_003400922.1| - 0.042 13.4 0.5 0.042 13.4 0.4 4.3 5 1 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase Epimerase PF01370.16 gi|284162300|ref|YP_003400923.1| - 8.7e-62 208.6 0.1 3.9e-34 118.1 0.0 2.3 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284162300|ref|YP_003400923.1| - 2.4e-15 55.9 0.1 4.9e-11 41.8 0.0 2.2 2 0 0 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|284162300|ref|YP_003400923.1| - 3.8e-15 55.5 0.0 1e-07 31.1 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|284162300|ref|YP_003400923.1| - 4.1e-12 45.5 0.2 3.7e-07 29.3 0.0 3.2 2 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|284162300|ref|YP_003400923.1| - 1e-11 44.2 0.0 3.3e-09 36.0 0.0 2.4 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Intein_splicing PF14890.1 gi|284162300|ref|YP_003400923.1| - 1e-08 34.5 0.0 3.9e-08 32.5 0.0 2.0 1 1 0 1 1 1 1 Intein splicing domain adh_short PF00106.20 gi|284162300|ref|YP_003400923.1| - 4.6e-07 29.9 0.0 9.1e-06 25.6 0.0 2.4 2 0 0 2 2 2 1 short chain dehydrogenase LAGLIDADG_3 PF14528.1 gi|284162300|ref|YP_003400923.1| - 2.1e-06 27.8 6.7 0.00016 21.8 0.2 3.2 3 0 0 3 3 2 2 LAGLIDADG-like domain NAD_binding_10 PF13460.1 gi|284162300|ref|YP_003400923.1| - 1.4e-05 25.1 0.0 2.6e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|284162300|ref|YP_003400923.1| - 0.0023 17.2 0.0 0.0045 16.2 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family HTH_45 PF14947.1 gi|284162300|ref|YP_003400923.1| - 0.0031 17.2 0.7 0.0031 17.2 0.5 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix Epimerase_Csub PF13950.1 gi|284162300|ref|YP_003400923.1| - 0.0041 17.0 0.0 0.022 14.6 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose 4-epimerase C-term subunit Saccharop_dh PF03435.13 gi|284162300|ref|YP_003400923.1| - 0.0074 15.3 0.0 0.013 14.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Ribosomal_S13 PF00416.17 gi|284162300|ref|YP_003400923.1| - 0.023 15.1 1.2 9.6 6.7 0.2 3.6 3 1 0 3 3 3 0 Ribosomal protein S13/S18 KR PF08659.5 gi|284162300|ref|YP_003400923.1| - 0.053 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 KR domain HemN_C PF06969.11 gi|284162300|ref|YP_003400923.1| - 0.064 13.3 0.0 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 HemN C-terminal domain DapB_N PF01113.15 gi|284162300|ref|YP_003400923.1| - 0.18 11.7 0.3 2.6 7.9 0.0 2.6 3 0 0 3 3 2 0 Dihydrodipicolinate reductase, N-terminus Antitoxin-MazE PF04014.13 gi|284162301|ref|YP_003400924.1| - 4.8e-06 26.1 0.6 7.5e-05 22.3 0.4 2.4 1 1 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|284162301|ref|YP_003400924.1| - 0.00017 21.2 0.1 0.00022 20.8 0.0 1.3 1 1 0 1 1 1 1 MraZ protein PIN PF01850.16 gi|284162302|ref|YP_003400925.1| - 1.2e-19 70.7 0.4 1.6e-19 70.4 0.2 1.1 1 0 0 1 1 1 1 PIN domain Ribosomal_L4 PF00573.17 gi|284162302|ref|YP_003400925.1| - 0.081 12.3 0.5 0.098 12.0 0.3 1.1 1 0 0 1 1 1 0 Ribosomal protein L4/L1 family RmlD_sub_bind PF04321.12 gi|284162303|ref|YP_003400926.1| - 4e-77 258.9 0.0 4.6e-77 258.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|284162303|ref|YP_003400926.1| - 4.7e-29 101.4 0.0 1.5e-28 99.8 0.0 1.7 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|284162303|ref|YP_003400926.1| - 1.3e-13 50.4 0.7 7e-12 44.8 0.5 3.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|284162303|ref|YP_003400926.1| - 7.4e-13 47.9 0.1 1.6e-11 43.5 0.0 2.2 2 1 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.14 gi|284162303|ref|YP_003400926.1| - 1.7e-11 43.3 0.2 5e-11 41.8 0.1 1.9 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|284162303|ref|YP_003400926.1| - 3.4e-08 33.7 0.0 5e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|284162303|ref|YP_003400926.1| - 2.9e-06 27.2 0.1 0.0051 16.7 0.5 3.1 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|284162303|ref|YP_003400926.1| - 0.013 14.8 0.2 0.086 12.0 0.1 2.0 1 1 0 1 1 1 0 NmrA-like family DFP PF04127.10 gi|284162303|ref|YP_003400926.1| - 0.094 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Zeta_toxin PF06414.7 gi|284162303|ref|YP_003400926.1| - 0.1 11.6 0.0 0.25 10.4 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin dTDP_sugar_isom PF00908.12 gi|284162304|ref|YP_003400927.1| - 5.1e-10 38.9 0.0 1.3e-09 37.6 0.0 1.6 1 1 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|284162304|ref|YP_003400927.1| - 3.4e-06 26.5 0.0 4.4e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|284162304|ref|YP_003400927.1| - 3.6e-05 23.1 0.0 8.6e-05 21.9 0.0 1.6 1 1 0 1 1 1 1 Cupin domain DUF1971 PF09313.6 gi|284162304|ref|YP_003400927.1| - 0.058 13.1 0.0 0.093 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1971) Glycos_transf_2 PF00535.21 gi|284162305|ref|YP_003400928.1| - 2.2e-26 92.5 0.1 3.3e-26 91.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284162305|ref|YP_003400928.1| - 1.2e-16 61.1 0.0 1.9e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|284162305|ref|YP_003400928.1| - 7.9e-13 48.5 0.1 1.1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|284162305|ref|YP_003400928.1| - 9.3e-08 31.4 0.0 1.7e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|284162305|ref|YP_003400928.1| - 8e-07 28.5 0.0 1.1e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 NTP_transf_3 PF12804.2 gi|284162305|ref|YP_003400928.1| - 0.0076 16.3 0.0 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|284162306|ref|YP_003400929.1| - 1.3e-34 119.3 0.5 2.3e-34 118.5 0.2 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284162306|ref|YP_003400929.1| - 8.3e-26 91.1 0.0 1e-25 90.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|284162306|ref|YP_003400929.1| - 5.7e-15 55.1 0.3 7.5e-15 54.7 0.2 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|284162306|ref|YP_003400929.1| - 1.4e-09 37.9 1.0 1.4e-08 34.6 0.8 2.0 1 1 1 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|284162306|ref|YP_003400929.1| - 0.001 19.3 0.0 0.0035 17.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 NTP_transferase PF00483.18 gi|284162306|ref|YP_003400929.1| - 0.042 13.1 0.1 0.067 12.4 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Glyco_tranf_2_5 PF13712.1 gi|284162306|ref|YP_003400929.1| - 0.083 12.1 2.6 6 6.0 0.0 2.9 2 1 1 3 3 3 0 Glycosyltransferase like family ABC2_membrane PF01061.19 gi|284162307|ref|YP_003400930.1| - 3.4e-25 88.4 28.9 3.4e-25 88.4 20.0 1.5 2 0 0 2 2 2 1 ABC-2 type transporter Viral_Beta_CD PF04530.7 gi|284162307|ref|YP_003400930.1| - 0.55 10.4 2.6 0.56 10.3 0.2 2.2 2 0 0 2 2 2 0 Viral Beta C/D like family ABC_tran PF00005.22 gi|284162308|ref|YP_003400931.1| - 1.9e-24 86.4 0.0 6.8e-24 84.7 0.0 1.9 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284162308|ref|YP_003400931.1| - 2.3e-16 60.6 0.4 1.3e-13 51.6 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284162308|ref|YP_003400931.1| - 2.2e-09 36.8 0.1 2.4e-05 23.5 0.1 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|284162308|ref|YP_003400931.1| - 1.9e-08 34.8 0.6 3.1e-08 34.1 0.4 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284162308|ref|YP_003400931.1| - 8.9e-07 28.3 0.0 1.6e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|284162308|ref|YP_003400931.1| - 1.9e-06 27.2 0.4 0.01 15.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_14 PF13173.1 gi|284162308|ref|YP_003400931.1| - 0.00015 21.7 0.6 0.43 10.4 0.1 2.4 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|284162308|ref|YP_003400931.1| - 0.0002 21.1 0.4 0.00033 20.4 0.3 1.3 1 1 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|284162308|ref|YP_003400931.1| - 0.00029 20.3 0.4 0.12 11.7 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|284162308|ref|YP_003400931.1| - 0.00067 19.8 0.2 0.0026 17.9 0.2 1.8 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|284162308|ref|YP_003400931.1| - 0.00096 18.8 2.0 0.27 10.9 0.1 2.4 2 0 0 2 2 2 2 NTPase ABC_ATPase PF09818.4 gi|284162308|ref|YP_003400931.1| - 0.0016 17.0 0.5 0.094 11.2 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA PF00004.24 gi|284162308|ref|YP_003400931.1| - 0.0017 18.5 1.0 0.016 15.4 0.7 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|284162308|ref|YP_003400931.1| - 0.011 15.1 0.2 0.099 12.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|284162308|ref|YP_003400931.1| - 0.013 16.2 0.4 0.032 15.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|284162308|ref|YP_003400931.1| - 0.014 14.5 0.0 0.029 13.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|284162308|ref|YP_003400931.1| - 0.017 14.8 0.1 0.092 12.4 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_PrkA PF08298.6 gi|284162308|ref|YP_003400931.1| - 0.02 13.6 0.1 0.025 13.3 0.1 1.2 1 0 0 1 1 1 0 PrkA AAA domain Methyltransf_31 PF13847.1 gi|284162308|ref|YP_003400931.1| - 0.027 14.0 0.1 0.047 13.2 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain Rad17 PF03215.10 gi|284162308|ref|YP_003400931.1| - 0.03 13.0 0.0 0.098 11.3 0.0 1.7 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|284162308|ref|YP_003400931.1| - 0.062 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain MutS_V PF00488.16 gi|284162308|ref|YP_003400931.1| - 0.063 12.6 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 MutS domain V Miro PF08477.8 gi|284162308|ref|YP_003400931.1| - 0.1 13.1 0.7 0.46 10.9 0.1 2.4 3 1 0 3 3 2 0 Miro-like protein AAA_5 PF07728.9 gi|284162308|ref|YP_003400931.1| - 0.1 12.2 0.0 0.61 9.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|284162308|ref|YP_003400931.1| - 0.11 12.7 0.7 0.42 10.9 0.5 2.1 1 1 0 1 1 1 0 AAA domain Glycos_transf_2 PF00535.21 gi|284162309|ref|YP_003400932.1| - 3e-59 199.5 3.0 1.8e-32 112.3 0.1 3.5 3 0 0 3 3 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284162309|ref|YP_003400932.1| - 2.1e-39 135.6 0.0 6.7e-22 78.4 0.0 3.1 2 1 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|284162309|ref|YP_003400932.1| - 1.3e-20 73.6 2.6 1.9e-10 40.3 0.8 3.9 2 2 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|284162309|ref|YP_003400932.1| - 6.3e-15 54.9 1.3 1.6e-10 40.5 0.0 3.3 2 1 1 3 3 3 2 Glycosyltransferase like family Methyltransf_11 PF08241.7 gi|284162309|ref|YP_003400932.1| - 1.6e-08 34.8 0.0 5e-08 33.3 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Glyco_trans_2_3 PF13632.1 gi|284162309|ref|YP_003400932.1| - 3.4e-08 33.4 0.2 5.3e-05 23.0 0.0 2.9 2 1 0 2 2 2 2 Glycosyl transferase family group 2 Methyltransf_23 PF13489.1 gi|284162309|ref|YP_003400932.1| - 3.6e-07 30.0 0.0 1.8e-06 27.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284162309|ref|YP_003400932.1| - 0.00011 22.5 0.0 0.00037 20.8 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain IncA PF04156.9 gi|284162309|ref|YP_003400932.1| - 0.00025 20.6 21.1 0.00052 19.6 14.6 1.5 1 0 0 1 1 1 1 IncA protein Methyltransf_12 PF08242.7 gi|284162309|ref|YP_003400932.1| - 0.00047 20.5 0.1 0.011 16.2 0.0 3.3 2 2 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284162309|ref|YP_003400932.1| - 0.0034 16.9 0.1 0.0034 16.9 0.0 4.2 3 2 1 4 4 4 1 Methyltransferase domain Cast PF10174.4 gi|284162309|ref|YP_003400932.1| - 0.012 13.7 19.5 0.019 13.0 13.5 1.2 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Glyco_transf_21 PF13506.1 gi|284162309|ref|YP_003400932.1| - 0.072 12.3 0.0 0.31 10.2 0.0 2.1 1 0 0 1 1 1 0 Glycosyl transferase family 21 ATG16 PF08614.6 gi|284162309|ref|YP_003400932.1| - 0.08 12.7 30.2 0.93 9.2 10.0 2.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Spc7 PF08317.6 gi|284162309|ref|YP_003400932.1| - 0.086 11.4 27.0 0.013 14.1 15.5 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Cep57_CLD_2 PF14197.1 gi|284162309|ref|YP_003400932.1| - 0.15 12.0 16.8 1.5 8.8 0.3 2.8 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 Filo_VP35 PF02097.10 gi|284162309|ref|YP_003400932.1| - 0.22 10.7 6.0 0.13 11.3 2.6 1.7 1 1 1 2 2 2 0 Filoviridae VP35 ADIP PF11559.3 gi|284162309|ref|YP_003400932.1| - 0.22 11.3 26.9 0.43 10.4 5.9 2.9 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Tektin PF03148.9 gi|284162309|ref|YP_003400932.1| - 0.29 9.6 21.9 0.094 11.2 5.7 2.6 1 1 2 3 3 3 0 Tektin family Reo_sigmaC PF04582.7 gi|284162309|ref|YP_003400932.1| - 0.29 10.2 4.6 0.69 9.0 3.2 1.5 1 1 0 1 1 1 0 Reovirus sigma C capsid protein NEP PF10167.4 gi|284162309|ref|YP_003400932.1| - 0.7 9.6 7.1 0.84 9.3 3.3 2.3 1 1 1 2 2 2 0 Uncharacterised conserved protein DUF3450 PF11932.3 gi|284162309|ref|YP_003400932.1| - 1.7 7.8 13.9 0.27 10.4 2.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) WEMBL PF05701.6 gi|284162309|ref|YP_003400932.1| - 2 6.7 22.5 3.5 5.9 15.6 1.3 1 0 0 1 1 1 0 Weak chloroplast movement under blue light APG6 PF04111.7 gi|284162309|ref|YP_003400932.1| - 2.2 7.2 23.9 17 4.3 16.5 2.2 1 1 0 1 1 1 0 Autophagy protein Apg6 Fez1 PF06818.10 gi|284162309|ref|YP_003400932.1| - 2.3 8.2 17.3 5.8 6.8 2.1 2.6 1 1 1 2 2 2 0 Fez1 DUF1664 PF07889.7 gi|284162309|ref|YP_003400932.1| - 3.1 7.6 16.9 35 4.2 3.1 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF4140 PF13600.1 gi|284162309|ref|YP_003400932.1| - 3.1 8.2 12.1 4.4 7.7 2.1 2.8 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF869 PF05911.6 gi|284162309|ref|YP_003400932.1| - 5.5 5.1 21.9 5 5.2 4.8 2.2 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) Atg14 PF10186.4 gi|284162309|ref|YP_003400932.1| - 7.1 5.4 22.2 18 4.1 14.1 2.2 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 CALCOCO1 PF07888.6 gi|284162309|ref|YP_003400932.1| - 8.6 4.5 15.2 6.4 4.9 9.4 1.5 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF948 PF06103.6 gi|284162309|ref|YP_003400932.1| - 9.4 6.1 10.8 1.5 8.6 2.7 2.7 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) YfhO PF09586.5 gi|284162310|ref|YP_003400933.1| - 1.5e-12 46.4 37.9 1.2e-10 40.0 0.0 2.6 2 1 0 2 2 2 2 Bacterial membrane protein YfhO FTCD_C PF04961.7 gi|284162310|ref|YP_003400933.1| - 0.37 10.1 0.0 0.64 9.4 0.0 1.3 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase TraG_N PF07916.6 gi|284162312|ref|YP_003400935.1| - 0.43 8.9 7.9 0.53 8.6 5.4 1.1 1 0 0 1 1 1 0 TraG-like protein, N-terminal region PrgI PF12666.2 gi|284162312|ref|YP_003400935.1| - 0.47 10.6 6.4 0.88 9.7 0.1 2.1 2 0 0 2 2 2 0 PrgI family protein Methyltransf_23 PF13489.1 gi|284162314|ref|YP_003400937.1| - 4.8e-20 71.9 0.0 5.5e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284162314|ref|YP_003400937.1| - 9.4e-15 54.5 0.0 1.1e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284162314|ref|YP_003400937.1| - 4.2e-14 52.8 0.0 6.5e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284162314|ref|YP_003400937.1| - 2.1e-10 40.9 0.0 3.3e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284162314|ref|YP_003400937.1| - 8.3e-10 38.9 0.0 1.3e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284162314|ref|YP_003400937.1| - 4.1e-09 37.0 0.0 5.8e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|284162314|ref|YP_003400937.1| - 7.1e-07 28.7 0.0 9.1e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.7 gi|284162314|ref|YP_003400937.1| - 4e-06 25.8 0.0 4.7e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase TehB PF03848.9 gi|284162314|ref|YP_003400937.1| - 6.6e-05 22.1 0.0 8.8e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|284162314|ref|YP_003400937.1| - 8.5e-05 21.7 0.0 0.00011 21.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|284162314|ref|YP_003400937.1| - 0.00034 20.6 0.0 0.00041 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|284162314|ref|YP_003400937.1| - 0.00037 19.9 0.0 0.00052 19.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_32 PF13679.1 gi|284162314|ref|YP_003400937.1| - 0.0014 18.3 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284162314|ref|YP_003400937.1| - 0.0022 17.4 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_PK PF05891.7 gi|284162314|ref|YP_003400937.1| - 0.013 14.7 0.0 0.026 13.8 0.0 1.4 2 0 0 2 2 2 0 AdoMet dependent proline di-methyltransferase PCMT PF01135.14 gi|284162314|ref|YP_003400937.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0104 PF03706.8 gi|284162315|ref|YP_003400938.1| - 2.6e-29 102.4 30.7 3.1e-29 102.1 21.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|284162316|ref|YP_003400939.1| - 5.6e-26 91.2 0.1 8.1e-26 90.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|284162316|ref|YP_003400939.1| - 7e-08 32.5 0.0 1e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF1469 PF07332.6 gi|284162316|ref|YP_003400939.1| - 0.003 17.2 2.4 0.0052 16.5 1.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) Cro PF09048.5 gi|284162316|ref|YP_003400939.1| - 0.032 13.8 0.2 0.64 9.7 0.0 2.5 2 0 0 2 2 2 0 Cro SLAC1 PF03595.12 gi|284162316|ref|YP_003400939.1| - 0.042 12.5 3.3 0.058 12.0 2.3 1.1 1 0 0 1 1 1 0 Voltage-dependent anion channel Glyco_tranf_2_4 PF13704.1 gi|284162316|ref|YP_003400939.1| - 0.12 12.6 0.0 0.26 11.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Sulfate_transp PF00916.15 gi|284162316|ref|YP_003400939.1| - 0.38 9.7 5.6 0.63 9.0 3.8 1.3 1 0 0 1 1 1 0 Sulfate transporter family IncA PF04156.9 gi|284162316|ref|YP_003400939.1| - 0.5 9.9 2.8 0.87 9.1 1.9 1.3 1 0 0 1 1 1 0 IncA protein HXXEE PF13787.1 gi|284162316|ref|YP_003400939.1| - 2.2 8.6 6.0 4.2 7.7 4.2 1.4 1 0 0 1 1 1 0 Protein of unknown function with HXXEE motif DUF373 PF04123.8 gi|284162316|ref|YP_003400939.1| - 9 5.1 9.5 1.2 8.0 2.9 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF373) NTP_transferase PF00483.18 gi|284162317|ref|YP_003400940.1| - 5.8e-32 110.9 0.0 7.2e-32 110.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|284162317|ref|YP_003400940.1| - 1.3e-09 38.3 0.0 1.8e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|284162317|ref|YP_003400940.1| - 0.0066 15.9 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Smr PF01713.16 gi|284162317|ref|YP_003400940.1| - 0.093 12.9 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Smr domain Glycos_transf_2 PF00535.21 gi|284162317|ref|YP_003400940.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 PIN PF01850.16 gi|284162318|ref|YP_003400941.1| - 4.5e-12 46.3 0.5 5.2e-12 46.1 0.3 1.1 1 0 0 1 1 1 1 PIN domain DUF1955 PF09205.5 gi|284162318|ref|YP_003400941.1| - 0.0019 17.7 0.3 0.0023 17.4 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1955) Fcf1 PF04900.7 gi|284162318|ref|YP_003400941.1| - 0.11 12.5 0.1 0.22 11.5 0.0 1.6 2 0 0 2 2 2 0 Fcf1 Antitoxin-MazE PF04014.13 gi|284162319|ref|YP_003400942.1| - 6e-08 32.2 1.8 1e-07 31.5 0.3 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE UDPG_MGDP_dh_N PF03721.9 gi|284162320|ref|YP_003400943.1| - 1.6e-69 232.9 1.3 1.7e-69 232.9 0.2 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|284162320|ref|YP_003400943.1| - 1e-39 134.6 0.0 2.1e-39 133.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|284162320|ref|YP_003400943.1| - 1.3e-27 96.0 0.2 3.9e-26 91.2 0.1 2.9 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|284162320|ref|YP_003400943.1| - 3.9e-06 27.2 2.5 0.25 11.7 0.1 4.4 2 1 2 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|284162320|ref|YP_003400943.1| - 7.5e-05 22.5 0.1 0.00072 19.3 0.0 2.6 3 1 1 4 4 4 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|284162320|ref|YP_003400943.1| - 0.0017 17.7 0.0 0.013 14.8 0.0 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|284162320|ref|YP_003400943.1| - 0.0073 16.6 0.1 0.028 14.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|284162320|ref|YP_003400943.1| - 0.0084 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|284162320|ref|YP_003400943.1| - 0.013 16.0 0.0 0.3 11.6 0.0 2.9 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|284162320|ref|YP_003400943.1| - 0.015 15.1 0.1 3.3 7.5 0.0 2.9 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF234 PF03008.9 gi|284162321|ref|YP_003400944.1| - 2.4e-34 117.4 2.2 5.9e-34 116.1 1.5 1.7 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function Arch_ATPase PF01637.13 gi|284162321|ref|YP_003400944.1| - 2e-22 80.0 0.4 2e-22 80.0 0.3 2.7 3 1 0 3 3 3 2 Archaeal ATPase DUF3091 PF11291.3 gi|284162321|ref|YP_003400944.1| - 0.09 12.7 2.8 0.61 10.0 0.1 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF3091) AAA_22 PF13401.1 gi|284162321|ref|YP_003400944.1| - 0.14 12.3 0.0 0.54 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF1732 PF08340.6 gi|284162322|ref|YP_003400945.1| - 0.012 15.3 0.8 0.015 15.0 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1732) Kinesin-relat_1 PF12711.2 gi|284162322|ref|YP_003400945.1| - 0.043 14.2 3.7 0.05 13.9 2.3 1.5 1 1 0 1 1 1 0 Kinesin motor Syntaxin PF00804.20 gi|284162322|ref|YP_003400945.1| - 0.061 13.5 0.6 0.08 13.1 0.4 1.2 1 0 0 1 1 1 0 Syntaxin Allexi_40kDa PF05549.6 gi|284162322|ref|YP_003400945.1| - 0.086 12.1 0.2 0.086 12.1 0.1 1.0 1 0 0 1 1 1 0 Allexivirus 40kDa protein Snf7 PF03357.16 gi|284162322|ref|YP_003400945.1| - 0.18 11.2 2.6 0.17 11.2 1.8 1.1 1 0 0 1 1 1 0 Snf7 FlaC_arch PF05377.6 gi|284162322|ref|YP_003400945.1| - 0.24 11.2 1.8 0.77 9.6 0.2 2.1 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) CorA PF01544.13 gi|284162324|ref|YP_003400947.1| - 2.5e-81 272.9 5.8 3e-81 272.6 4.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Phage_holin_1 PF04531.8 gi|284162324|ref|YP_003400947.1| - 0.13 12.3 0.3 0.29 11.2 0.2 1.6 1 0 0 1 1 1 0 Bacteriophage holin CxxCxxCC PF03692.10 gi|284162325|ref|YP_003400948.1| - 3.1e-12 46.7 1.5 4.2e-12 46.3 1.0 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain EamA PF00892.15 gi|284162326|ref|YP_003400949.1| - 1.9e-16 60.2 48.1 3.1e-10 40.1 15.3 3.2 2 2 2 4 4 4 2 EamA-like transporter family MoaE PF02391.12 gi|284162327|ref|YP_003400950.1| - 1.2e-12 47.6 0.0 1.8e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 MoaE protein DUF1297 PF06973.7 gi|284162328|ref|YP_003400951.1| - 4.3e-69 231.5 0.7 5.5e-69 231.2 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|284162328|ref|YP_003400951.1| - 2.2e-45 153.3 0.0 3.4e-44 149.5 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|284162328|ref|YP_003400951.1| - 5.5e-07 29.4 0.1 9.5e-06 25.4 0.1 2.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|284162328|ref|YP_003400951.1| - 2.1e-05 24.4 0.0 4.9e-05 23.2 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain AIRS_C PF02769.17 gi|284162329|ref|YP_003400952.1| - 3.8e-24 85.4 1.0 6.1e-24 84.7 0.7 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|284162329|ref|YP_003400952.1| - 1.3e-11 44.6 0.1 3.7e-11 43.1 0.0 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Sua5_yciO_yrdC PF01300.13 gi|284162330|ref|YP_003400953.1| - 1.1e-37 128.9 0.0 1.8e-37 128.3 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|284162330|ref|YP_003400953.1| - 8.8e-31 105.0 15.9 2.1e-16 59.0 1.1 2.7 3 0 0 3 3 3 2 HypF finger Acylphosphatase PF00708.13 gi|284162330|ref|YP_003400953.1| - 4.5e-23 81.1 0.1 8.6e-23 80.2 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase CHDCT2 PF08074.6 gi|284162330|ref|YP_003400953.1| - 0.0032 17.2 0.1 0.0066 16.1 0.1 1.4 1 0 0 1 1 1 1 CHDCT2 (NUC038) domain Peptidase_M22 PF00814.20 gi|284162330|ref|YP_003400953.1| - 0.0035 16.8 0.0 0.014 14.9 0.0 1.8 2 0 0 2 2 2 1 Glycoprotease family Zn-ribbon_8 PF09723.5 gi|284162330|ref|YP_003400953.1| - 0.035 14.0 0.5 2.1 8.3 0.1 2.8 2 0 0 2 2 2 0 Zinc ribbon domain PHP PF02811.14 gi|284162331|ref|YP_003400954.1| - 8.3e-16 58.2 0.1 9.6e-14 51.5 0.1 2.1 1 1 0 1 1 1 1 PHP domain RNase_P_p30 PF01876.11 gi|284162331|ref|YP_003400954.1| - 0.02 14.1 0.0 0.036 13.3 0.0 1.4 1 0 0 1 1 1 0 RNase P subunit p30 DUF1152 PF06626.7 gi|284162331|ref|YP_003400954.1| - 0.051 12.6 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1152) AP_endonuc_2 PF01261.19 gi|284162331|ref|YP_003400954.1| - 0.085 12.1 0.0 0.17 11.1 0.0 1.8 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Peptidase_S66 PF02016.10 gi|284162331|ref|YP_003400954.1| - 0.12 11.3 0.0 0.28 10.1 0.0 1.6 1 1 1 2 2 2 0 LD-carboxypeptidase YjzC PF14168.1 gi|284162331|ref|YP_003400954.1| - 0.16 11.9 0.0 0.38 10.7 0.0 1.6 1 0 0 1 1 1 0 YjzC-like protein Antitoxin-MazE PF04014.13 gi|284162332|ref|YP_003400955.1| - 1.1e-09 37.7 0.1 1.1e-09 37.7 0.1 2.7 3 0 0 3 3 3 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|284162332|ref|YP_003400955.1| - 1.8e-05 25.0 9.5 0.00013 22.3 3.0 2.8 3 0 0 3 3 3 1 PhoU domain OSTMP1 PF09777.4 gi|284162332|ref|YP_003400955.1| - 0.013 14.6 0.1 3.1 6.9 0.0 2.2 1 1 1 2 2 2 0 Osteopetrosis-associated transmembrane protein 1 precursor PhoU_div PF01865.11 gi|284162332|ref|YP_003400955.1| - 0.03 13.4 4.8 0.041 13.0 2.6 1.8 1 1 0 1 1 1 0 Protein of unknown function DUF47 DUF1297 PF06973.7 gi|284162333|ref|YP_003400956.1| - 1.3e-59 200.7 0.0 2e-59 200.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|284162333|ref|YP_003400956.1| - 6e-45 152.0 0.0 9.3e-45 151.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF655 PF04919.7 gi|284162334|ref|YP_003400957.1| - 8e-75 250.5 2.9 9.1e-75 250.3 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|284162334|ref|YP_003400957.1| - 8.9e-06 25.6 0.0 2.9e-05 24.0 0.0 1.8 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|284162334|ref|YP_003400957.1| - 7.5e-05 22.5 0.0 0.00022 21.1 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|284162334|ref|YP_003400957.1| - 0.052 13.2 0.0 0.18 11.5 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif Peptidase_U9 PF03420.8 gi|284162334|ref|YP_003400957.1| - 0.081 12.1 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Prohead core protein protease RNA_pol_Rpb4 PF03874.11 gi|284162335|ref|YP_003400958.1| - 6.1e-14 52.0 3.6 7.1e-14 51.8 2.5 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 AKAP7_NLS PF10469.4 gi|284162335|ref|YP_003400958.1| - 0.024 14.3 0.5 0.089 12.4 0.4 1.7 1 1 0 1 1 1 0 AKAP7 2'5' RNA ligase-like domain Imm45 PF15603.1 gi|284162335|ref|YP_003400958.1| - 0.14 12.3 2.1 8.6 6.5 0.2 2.2 2 0 0 2 2 2 0 Immunity protein 45 FliG_N PF14842.1 gi|284162335|ref|YP_003400958.1| - 0.15 12.2 1.9 0.74 9.9 0.5 2.2 2 1 0 2 2 2 0 FliG N-terminal domain Ribosomal_L12 PF00542.14 gi|284162335|ref|YP_003400958.1| - 0.24 11.4 3.4 3.4 7.7 0.1 2.6 3 0 0 3 3 3 0 Ribosomal protein L7/L12 C-terminal domain Ribosomal_L21e PF01157.13 gi|284162336|ref|YP_003400959.1| - 1.5e-27 95.2 1.7 1.7e-27 95.1 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Ribosomal_L19 PF01245.15 gi|284162336|ref|YP_003400959.1| - 0.041 13.6 0.1 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L19 TOBE_2 PF08402.5 gi|284162336|ref|YP_003400959.1| - 0.047 13.6 0.1 4.3 7.3 0.0 2.4 3 0 0 3 3 3 0 TOBE domain GPI PF06560.6 gi|284162337|ref|YP_003400960.1| - 5.8e-57 191.6 1.4 7.3e-57 191.3 1.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|284162337|ref|YP_003400960.1| - 0.00055 19.3 0.2 0.0012 18.3 0.1 1.6 1 1 0 1 1 1 1 Cupin domain VitK2_biosynth PF02621.9 gi|284162338|ref|YP_003400961.1| - 1.7e-80 269.8 0.4 1.9e-80 269.7 0.3 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis NMT1 PF09084.6 gi|284162338|ref|YP_003400961.1| - 0.00029 20.4 0.0 0.0012 18.5 0.0 2.0 1 1 0 1 1 1 1 NMT1/THI5 like YhfZ_C PF14503.1 gi|284162338|ref|YP_003400961.1| - 0.032 13.5 0.0 0.061 12.6 0.0 1.5 1 0 0 1 1 1 0 YhfZ C-terminal domain PhoU_div PF01865.11 gi|284162339|ref|YP_003400962.1| - 6.2e-62 208.5 6.6 7.1e-62 208.3 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|284162339|ref|YP_003400962.1| - 0.0025 18.1 7.5 0.076 13.4 0.2 2.4 1 1 0 2 2 2 2 PhoU domain Mnd1 PF03962.10 gi|284162339|ref|YP_003400962.1| - 0.0071 16.0 1.2 0.23 11.0 0.3 2.1 2 0 0 2 2 2 1 Mnd1 family DUF812 PF05667.6 gi|284162339|ref|YP_003400962.1| - 0.018 13.5 1.5 0.18 10.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) GlnE PF03710.10 gi|284162339|ref|YP_003400962.1| - 0.15 11.3 0.6 0.35 10.0 0.1 1.7 1 1 1 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase Seryl_tRNA_N PF02403.17 gi|284162339|ref|YP_003400962.1| - 0.2 11.6 3.4 1.7 8.7 0.8 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain HalX PF08663.5 gi|284162339|ref|YP_003400962.1| - 0.24 11.3 4.4 0.31 11.0 1.5 2.1 2 0 0 2 2 2 0 HalX domain Colicin_Pyocin PF01320.13 gi|284162339|ref|YP_003400962.1| - 0.25 11.2 1.3 0.88 9.4 0.8 2.0 1 1 0 1 1 1 0 Colicin immunity protein / pyocin immunity protein Snf7 PF03357.16 gi|284162339|ref|YP_003400962.1| - 0.26 10.6 4.7 3.5 6.9 0.1 2.2 2 0 0 2 2 2 0 Snf7 Prefoldin_2 PF01920.15 gi|284162339|ref|YP_003400962.1| - 2.7 7.8 8.5 3.8 7.3 0.4 2.9 2 1 1 3 3 3 0 Prefoldin subunit TSC22 PF01166.13 gi|284162339|ref|YP_003400962.1| - 5.9 6.9 8.4 0.47 10.4 1.0 2.6 2 1 1 3 3 3 0 TSC-22/dip/bun family PHO4 PF01384.15 gi|284162340|ref|YP_003400963.1| - 4e-105 351.0 28.8 4.7e-105 350.8 20.0 1.1 1 0 0 1 1 1 1 Phosphate transporter family tRNA_anti-codon PF01336.20 gi|284162342|ref|YP_003400965.1| - 1.3e-11 44.1 4.4 2e-10 40.3 0.1 3.3 3 1 0 3 3 3 2 OB-fold nucleic acid binding domain YjeF_N PF03853.10 gi|284162343|ref|YP_003400966.1| - 2.7e-48 163.7 0.0 5.1e-48 162.8 0.0 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus Carb_kinase PF01256.12 gi|284162343|ref|YP_003400966.1| - 4.7e-44 150.4 0.2 7.1e-44 149.9 0.1 1.3 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|284162343|ref|YP_003400966.1| - 6.7e-08 31.9 0.0 1.1e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Semialdhyde_dh PF01118.19 gi|284162343|ref|YP_003400966.1| - 0.00057 20.1 0.3 1.3 9.3 0.0 2.7 2 1 0 2 2 2 2 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|284162343|ref|YP_003400966.1| - 0.0016 18.4 0.0 0.026 14.5 0.0 2.2 2 0 0 2 2 2 1 NADH(P)-binding IF-2B PF01008.12 gi|284162344|ref|YP_003400967.1| - 1.8e-97 325.7 0.8 2.1e-97 325.5 0.6 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Rsbr_N PF08678.5 gi|284162344|ref|YP_003400967.1| - 0.084 12.7 0.1 53 3.6 0.0 3.2 2 1 1 3 3 3 0 Rsbr N terminal DeoRC PF00455.17 gi|284162344|ref|YP_003400967.1| - 0.11 12.1 0.7 0.34 10.5 0.0 2.1 3 0 0 3 3 3 0 DeoR C terminal sensor domain DUF1356 PF07092.7 gi|284162345|ref|YP_003400968.1| - 0.084 12.0 0.1 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) DUF2749 PF10907.3 gi|284162345|ref|YP_003400968.1| - 0.14 12.0 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) Aminotran_1_2 PF00155.16 gi|284162346|ref|YP_003400969.1| - 5.7e-62 209.7 0.0 6.5e-62 209.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|284162346|ref|YP_003400969.1| - 4.4e-09 35.8 0.0 1.4e-08 34.2 0.0 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|284162346|ref|YP_003400969.1| - 3.5e-07 28.8 0.0 5.2e-07 28.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|284162346|ref|YP_003400969.1| - 9.8e-06 24.5 0.0 1.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Alliinase_C PF04864.8 gi|284162346|ref|YP_003400969.1| - 4.7e-05 22.2 0.0 0.00013 20.7 0.0 1.6 1 1 1 2 2 2 1 Allinase Met_gamma_lyase PF06838.6 gi|284162346|ref|YP_003400969.1| - 0.029 12.7 0.1 0.039 12.2 0.1 1.1 1 0 0 1 1 1 0 Methionine gamma-lyase YabP PF07873.6 gi|284162347|ref|YP_003400970.1| - 0.0056 16.2 0.2 0.033 13.7 0.1 1.9 1 1 1 2 2 2 1 YabP family MgtE PF01769.11 gi|284162348|ref|YP_003400971.1| - 1.4e-43 148.4 27.7 7.5e-23 81.2 4.1 3.0 2 1 1 3 3 3 2 Divalent cation transporter DUF432 PF04254.8 gi|284162349|ref|YP_003400972.1| - 1.2e-39 135.0 0.2 1.8e-39 134.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.13 gi|284162350|ref|YP_003400973.1| - 5.2e-62 208.8 2.5 5.2e-62 208.8 1.8 1.3 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF3775 PF12616.3 gi|284162351|ref|YP_003400974.1| - 0.042 13.6 0.1 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3775) ComX PF05952.7 gi|284162351|ref|YP_003400974.1| - 0.11 11.9 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacillus competence pheromone ComX HAD_2 PF13419.1 gi|284162352|ref|YP_003400975.1| - 9.4e-17 61.7 0.3 1.7e-14 54.4 0.0 2.1 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|284162352|ref|YP_003400975.1| - 2e-08 33.7 0.0 3.2e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|284162352|ref|YP_003400975.1| - 5.5e-08 33.4 0.2 2.8e-05 24.6 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284162352|ref|YP_003400975.1| - 2.5e-06 27.8 0.4 7.4e-06 26.2 0.3 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|284162352|ref|YP_003400975.1| - 0.029 14.0 0.2 0.11 12.1 0.2 2.0 1 1 0 1 1 1 0 Acid Phosphatase UbiA PF01040.13 gi|284162353|ref|YP_003400976.1| - 9.9e-34 116.7 25.5 1.2e-33 116.4 17.7 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family HTH_11 PF08279.7 gi|284162354|ref|YP_003400977.1| - 2.6e-06 26.9 0.5 3.3e-06 26.6 0.3 1.1 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|284162354|ref|YP_003400977.1| - 5.3e-05 22.5 0.2 6.4e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.6 gi|284162354|ref|YP_003400977.1| - 0.0001 21.5 0.9 0.00014 21.1 0.4 1.4 1 1 0 1 1 1 1 CodY helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284162354|ref|YP_003400977.1| - 0.00027 20.3 0.1 0.00035 20.0 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|284162354|ref|YP_003400977.1| - 0.0012 18.2 0.6 0.0014 18.0 0.4 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FaeA PF04703.7 gi|284162354|ref|YP_003400977.1| - 0.0016 18.5 0.1 0.0018 18.3 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.14 gi|284162354|ref|YP_003400977.1| - 0.0018 17.9 0.4 0.0021 17.7 0.3 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Put_DNA-bind_N PF06971.8 gi|284162354|ref|YP_003400977.1| - 0.0065 16.2 0.1 0.012 15.3 0.0 1.5 1 1 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_20 PF12840.2 gi|284162354|ref|YP_003400977.1| - 0.016 14.9 0.0 0.02 14.6 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|284162354|ref|YP_003400977.1| - 0.017 15.2 0.1 0.023 14.8 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator HARE-HTH PF05066.8 gi|284162354|ref|YP_003400977.1| - 0.02 15.1 0.1 0.024 15.0 0.0 1.3 1 1 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain HTH_28 PF13518.1 gi|284162354|ref|YP_003400977.1| - 0.027 14.4 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|284162354|ref|YP_003400977.1| - 0.03 13.9 0.2 0.045 13.4 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.17 gi|284162354|ref|YP_003400977.1| - 0.039 13.6 0.0 0.045 13.4 0.0 1.1 1 0 0 1 1 1 0 MarR family IF2_N PF04760.10 gi|284162354|ref|YP_003400977.1| - 0.056 13.1 0.2 0.33 10.6 0.0 1.9 1 1 1 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_Crp_2 PF13545.1 gi|284162354|ref|YP_003400977.1| - 0.065 13.0 0.1 0.095 12.5 0.1 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain EAP30 PF04157.11 gi|284162354|ref|YP_003400977.1| - 0.078 12.1 0.0 0.084 12.0 0.0 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family DUF2042 PF09743.4 gi|284162354|ref|YP_003400977.1| - 0.093 12.0 0.0 0.093 12.0 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) TBPIP PF07106.8 gi|284162354|ref|YP_003400977.1| - 0.099 12.1 0.0 0.11 12.0 0.0 1.0 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DDRGK PF09756.4 gi|284162354|ref|YP_003400977.1| - 0.12 11.8 0.3 0.12 11.7 0.2 1.0 1 0 0 1 1 1 0 DDRGK domain PCNA_N PF00705.13 gi|284162355|ref|YP_003400978.1| - 2.3e-18 65.9 0.7 7.9e-16 57.7 0.1 2.2 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|284162355|ref|YP_003400978.1| - 1.2e-09 38.1 0.1 4.4e-09 36.3 0.1 1.9 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Pneumo_matrix PF03393.11 gi|284162355|ref|YP_003400978.1| - 0.089 11.6 0.2 0.13 11.1 0.2 1.2 1 0 0 1 1 1 0 Pneumovirus matrix protein Rad9 PF04139.8 gi|284162355|ref|YP_003400978.1| - 0.095 11.8 0.0 1.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Rad9 DNA_primase_lrg PF04104.9 gi|284162356|ref|YP_003400979.1| - 3.9e-31 108.2 4.1 2e-29 102.6 2.2 2.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF371 PF04027.8 gi|284162357|ref|YP_003400980.1| - 6.3e-49 165.0 0.0 7.1e-49 164.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) FBPase_3 PF01950.11 gi|284162358|ref|YP_003400981.1| - 8.3e-191 633.7 0.0 9.3e-191 633.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase KaiC PF06745.8 gi|284162359|ref|YP_003400982.1| - 1.9e-73 246.3 0.1 2.1e-73 246.1 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|284162359|ref|YP_003400982.1| - 4e-07 28.7 0.1 5.6e-07 28.2 0.1 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|284162359|ref|YP_003400982.1| - 1e-05 25.0 0.0 1.6e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|284162359|ref|YP_003400982.1| - 0.014 14.4 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RecA PF00154.16 gi|284162359|ref|YP_003400982.1| - 0.055 12.5 0.0 0.12 11.4 0.0 1.5 2 0 0 2 2 2 0 recA bacterial DNA recombination protein NACHT PF05729.7 gi|284162359|ref|YP_003400982.1| - 0.093 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Fer4_8 PF13183.1 gi|284162360|ref|YP_003400983.1| - 1.2e-07 31.5 6.6 2e-07 30.9 4.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284162360|ref|YP_003400983.1| - 1.4e-06 28.5 6.8 2.2e-06 27.8 4.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284162360|ref|YP_003400983.1| - 1.6e-05 25.0 6.7 3e-05 24.1 4.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162360|ref|YP_003400983.1| - 6.4e-05 22.6 10.0 0.00014 21.5 6.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Nitrate_red_gam PF02665.9 gi|284162360|ref|YP_003400983.1| - 0.00043 19.6 0.4 0.00043 19.6 0.3 2.9 2 1 1 3 3 3 2 Nitrate reductase gamma subunit Fer4_7 PF12838.2 gi|284162360|ref|YP_003400983.1| - 0.0011 19.2 10.8 0.0032 17.8 7.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284162360|ref|YP_003400983.1| - 0.019 15.7 7.1 1.4 9.6 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|284162360|ref|YP_003400983.1| - 0.024 14.5 2.5 0.024 14.5 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284162360|ref|YP_003400983.1| - 0.026 14.9 4.8 0.68 10.4 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284162360|ref|YP_003400983.1| - 0.032 13.8 12.8 0.11 12.1 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284162360|ref|YP_003400983.1| - 0.04 13.7 7.0 0.54 10.1 1.0 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284162360|ref|YP_003400983.1| - 0.055 13.3 13.1 0.75 9.7 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Tetraspannin PF00335.15 gi|284162360|ref|YP_003400983.1| - 2.3 7.4 20.1 0.12 11.6 4.6 2.9 2 1 1 3 3 3 0 Tetraspanin family FlpD PF02662.11 gi|284162361|ref|YP_003400984.1| - 2.6e-44 149.9 1.2 7.9e-42 141.8 0.0 2.4 2 0 0 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.9 gi|284162361|ref|YP_003400984.1| - 2.8e-14 53.4 1.1 9.1e-13 48.5 0.1 2.3 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|284162361|ref|YP_003400984.1| - 3.5e-11 42.6 1.3 2.3e-08 33.3 0.8 3.0 2 1 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284162361|ref|YP_003400984.1| - 5.3e-09 35.9 0.0 1.1e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|284162361|ref|YP_003400984.1| - 7.8e-09 35.8 0.4 0.11 12.4 0.0 3.2 2 1 2 4 4 4 4 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|284162361|ref|YP_003400984.1| - 1.1e-08 34.3 0.4 1.1e-08 34.3 0.3 1.7 2 0 0 2 2 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|284162361|ref|YP_003400984.1| - 3.7e-08 32.8 2.2 3.9e-08 32.7 0.4 1.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase Fer4_16 PF13484.1 gi|284162361|ref|YP_003400984.1| - 9.2e-08 32.7 9.4 0.0016 19.1 1.9 3.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Pyr_redox PF00070.22 gi|284162361|ref|YP_003400984.1| - 1.1e-07 32.1 4.1 0.00016 22.0 0.2 3.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.22 gi|284162361|ref|YP_003400984.1| - 1.3e-07 30.9 17.6 7.8e-05 22.1 0.3 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain HI0933_like PF03486.9 gi|284162361|ref|YP_003400984.1| - 2.4e-07 29.6 0.5 6e-05 21.6 0.1 2.7 3 0 0 3 3 3 1 HI0933-like protein Fer4_10 PF13237.1 gi|284162361|ref|YP_003400984.1| - 2.4e-07 30.4 6.9 2.4e-07 30.4 4.8 2.4 2 0 0 2 2 1 1 4Fe-4S dicluster domain GIDA PF01134.17 gi|284162361|ref|YP_003400984.1| - 2.8e-07 29.7 1.7 0.00012 21.0 0.1 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|284162361|ref|YP_003400984.1| - 3.7e-07 29.4 0.2 0.0067 15.3 0.0 3.0 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_9 PF13187.1 gi|284162361|ref|YP_003400984.1| - 5.6e-06 26.5 12.0 5.6e-06 26.5 8.3 2.8 4 0 0 4 4 1 1 4Fe-4S dicluster domain Amino_oxidase PF01593.19 gi|284162361|ref|YP_003400984.1| - 8.5e-06 25.0 0.0 0.024 13.7 0.0 2.8 2 1 1 3 3 3 2 Flavin containing amine oxidoreductase Thi4 PF01946.12 gi|284162361|ref|YP_003400984.1| - 1.4e-05 24.3 0.0 3e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Fer4_7 PF12838.2 gi|284162361|ref|YP_003400984.1| - 2e-05 24.8 12.0 2e-05 24.8 8.3 3.6 3 1 1 4 4 3 2 4Fe-4S dicluster domain FAD_binding_3 PF01494.14 gi|284162361|ref|YP_003400984.1| - 7.5e-05 21.9 1.4 0.0008 18.5 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain Fer4_17 PF13534.1 gi|284162361|ref|YP_003400984.1| - 0.00012 22.3 7.8 0.0078 16.5 0.2 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284162361|ref|YP_003400984.1| - 0.00016 21.6 16.0 0.00054 19.9 0.2 3.3 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162361|ref|YP_003400984.1| - 0.0003 20.5 17.1 0.0069 16.2 0.5 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284162361|ref|YP_003400984.1| - 0.00034 20.3 0.5 0.00034 20.3 0.3 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain S4 PF01479.20 gi|284162361|ref|YP_003400984.1| - 0.0004 19.7 0.0 0.00079 18.8 0.0 1.5 1 0 0 1 1 1 1 S4 domain NAD_binding_7 PF13241.1 gi|284162361|ref|YP_003400984.1| - 0.0047 17.1 0.0 0.023 14.9 0.0 2.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|284162361|ref|YP_003400984.1| - 0.0055 15.3 1.2 0.091 11.3 0.1 2.1 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|284162361|ref|YP_003400984.1| - 0.0065 16.2 1.0 11 5.7 0.0 3.2 2 1 1 3 3 3 0 FAD-NAD(P)-binding Fer4_11 PF13247.1 gi|284162361|ref|YP_003400984.1| - 0.0072 16.1 1.4 0.0072 16.1 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|284162361|ref|YP_003400984.1| - 0.0078 15.1 0.0 0.071 12.0 0.0 2.2 3 0 0 3 3 3 1 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|284162361|ref|YP_003400984.1| - 0.021 14.5 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_18 PF13746.1 gi|284162361|ref|YP_003400984.1| - 0.079 13.3 0.5 0.079 13.3 0.3 3.2 4 0 0 4 4 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284162361|ref|YP_003400984.1| - 3.8 7.4 20.1 0.02 14.7 3.8 3.4 4 0 0 4 4 2 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|284162362|ref|YP_003400985.1| - 6.4e-14 52.2 0.6 3.2e-06 27.1 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|284162362|ref|YP_003400985.1| - 2.7e-12 46.4 0.0 1.7e-11 43.9 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4 PF00037.22 gi|284162362|ref|YP_003400985.1| - 1.9e-11 43.0 19.3 1.7e-06 27.4 4.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain DAO PF01266.19 gi|284162362|ref|YP_003400985.1| - 5.5e-10 38.6 4.2 9.2e-09 34.6 0.6 2.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284162362|ref|YP_003400985.1| - 9.3e-10 38.3 0.0 1.7e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|284162362|ref|YP_003400985.1| - 1.9e-09 36.8 0.7 3.6e-09 35.9 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_7 PF12838.2 gi|284162362|ref|YP_003400985.1| - 8.4e-09 35.6 16.4 0.00056 20.2 2.8 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284162362|ref|YP_003400985.1| - 1.3e-07 31.5 6.8 0.00063 19.7 1.9 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain GIDA PF01134.17 gi|284162362|ref|YP_003400985.1| - 3.7e-07 29.3 1.7 1.8e-05 23.7 0.0 2.6 2 1 0 2 2 2 1 Glucose inhibited division protein A Fer4_6 PF12837.2 gi|284162362|ref|YP_003400985.1| - 3.7e-07 29.7 17.0 2.7e-05 23.8 3.8 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284162362|ref|YP_003400985.1| - 7.3e-07 28.8 6.2 0.00028 20.6 0.3 3.0 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162362|ref|YP_003400985.1| - 8.4e-07 28.5 15.2 0.0017 18.1 2.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain HI0933_like PF03486.9 gi|284162362|ref|YP_003400985.1| - 1e-06 27.5 0.8 7.3e-06 24.7 0.2 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|284162362|ref|YP_003400985.1| - 9.7e-06 25.4 0.5 0.023 14.4 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Fer4_9 PF13187.1 gi|284162362|ref|YP_003400985.1| - 3.2e-05 24.1 15.0 3.2e-05 24.1 10.4 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Thi4 PF01946.12 gi|284162362|ref|YP_003400985.1| - 3.2e-05 23.1 0.0 0.00019 20.6 0.0 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|284162362|ref|YP_003400985.1| - 3.6e-05 23.9 0.4 0.026 14.5 0.1 3.1 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|284162362|ref|YP_003400985.1| - 6.2e-05 21.8 2.1 0.043 12.4 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|284162362|ref|YP_003400985.1| - 6.5e-05 23.2 6.1 0.00027 21.2 2.1 2.7 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.1 gi|284162362|ref|YP_003400985.1| - 9.7e-05 23.0 12.8 0.0014 19.2 0.2 2.8 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|284162362|ref|YP_003400985.1| - 0.00011 22.5 12.7 0.025 14.9 1.7 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284162362|ref|YP_003400985.1| - 0.00037 20.3 10.3 0.0028 17.4 1.2 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain K_oxygenase PF13434.1 gi|284162362|ref|YP_003400985.1| - 0.00052 19.0 0.4 0.02 13.8 0.0 2.9 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_15 PF13459.1 gi|284162362|ref|YP_003400985.1| - 0.0017 18.8 6.6 0.48 11.0 0.6 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|284162362|ref|YP_003400985.1| - 0.0028 17.8 2.5 0.0028 17.8 1.7 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain FAD_binding_3 PF01494.14 gi|284162362|ref|YP_003400985.1| - 0.0036 16.4 0.2 0.0061 15.6 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|284162362|ref|YP_003400985.1| - 0.0042 16.0 0.3 0.046 12.6 0.1 2.4 3 0 0 3 3 3 1 Lycopene cyclase protein Fer4_18 PF13746.1 gi|284162362|ref|YP_003400985.1| - 0.011 16.1 3.3 0.011 16.1 2.3 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Amino_oxidase PF01593.19 gi|284162362|ref|YP_003400985.1| - 0.025 13.6 0.1 0.085 11.9 0.0 1.7 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Fer4_13 PF13370.1 gi|284162362|ref|YP_003400985.1| - 0.84 10.0 13.9 0.14 12.5 0.5 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|284162362|ref|YP_003400985.1| - 2 8.3 15.0 0.54 10.1 0.7 3.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|284162363|ref|YP_003400986.1| - 8.1e-20 71.0 2.3 6.5e-18 64.7 0.9 2.6 2 1 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|284162363|ref|YP_003400986.1| - 3.7e-10 39.7 1.8 1.6e-09 37.6 0.3 2.2 2 0 0 2 2 2 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|284162363|ref|YP_003400986.1| - 4.9e-08 32.2 4.0 1.1e-07 31.1 0.3 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|284162363|ref|YP_003400986.1| - 4.2e-06 26.7 0.9 0.015 15.2 0.3 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|284162363|ref|YP_003400986.1| - 0.0015 18.5 1.6 0.0053 16.7 1.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|284162363|ref|YP_003400986.1| - 0.0017 18.6 0.5 0.0052 17.1 0.3 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|284162363|ref|YP_003400986.1| - 0.0018 18.0 0.2 0.034 13.9 0.0 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|284162363|ref|YP_003400986.1| - 0.0029 16.7 2.0 0.0029 16.7 1.4 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|284162363|ref|YP_003400986.1| - 0.0034 16.5 0.2 0.0066 15.5 0.1 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|284162363|ref|YP_003400986.1| - 0.011 14.5 4.4 0.042 12.7 1.2 2.7 3 0 0 3 3 3 0 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|284162363|ref|YP_003400986.1| - 0.024 13.2 0.6 0.037 12.6 0.4 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FlgM PF04316.8 gi|284162363|ref|YP_003400986.1| - 0.064 13.2 0.2 0.16 11.9 0.2 1.7 1 0 0 1 1 1 0 Anti-sigma-28 factor, FlgM HI0933_like PF03486.9 gi|284162363|ref|YP_003400986.1| - 0.1 11.0 0.6 0.45 8.9 0.2 2.1 2 0 0 2 2 2 0 HI0933-like protein APS-reductase_C PF12139.3 gi|284162364|ref|YP_003400987.1| - 4.5e-36 122.8 0.0 7e-36 122.2 0.0 1.2 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4_9 PF13187.1 gi|284162364|ref|YP_003400987.1| - 2.7e-09 37.1 11.1 4.3e-09 36.4 7.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284162364|ref|YP_003400987.1| - 3.5e-09 35.8 12.1 3.8e-06 26.2 1.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284162364|ref|YP_003400987.1| - 7.6e-09 35.8 10.7 2.9e-08 33.9 7.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162364|ref|YP_003400987.1| - 6.7e-07 29.0 12.2 1.1e-06 28.3 8.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162364|ref|YP_003400987.1| - 1.5e-06 27.7 9.6 0.0028 17.4 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284162364|ref|YP_003400987.1| - 3.5e-05 23.7 11.5 0.037 14.3 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284162364|ref|YP_003400987.1| - 5.3e-05 22.9 11.5 0.026 14.4 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|284162364|ref|YP_003400987.1| - 0.00014 22.2 17.7 0.0029 18.0 2.6 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284162364|ref|YP_003400987.1| - 0.0014 18.4 11.0 0.0048 16.7 7.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284162364|ref|YP_003400987.1| - 0.0026 18.4 7.0 0.017 15.8 0.7 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|284162364|ref|YP_003400987.1| - 0.028 14.8 2.5 0.028 14.8 1.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284162364|ref|YP_003400987.1| - 0.081 12.9 12.0 0.23 11.5 8.3 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284162364|ref|YP_003400987.1| - 0.34 11.4 9.3 7.9 7.1 6.5 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|284162364|ref|YP_003400987.1| - 2.9 8.3 13.3 0.68 10.3 2.4 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain DbpA PF03880.10 gi|284162365|ref|YP_003400988.1| - 0.075 12.7 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 DbpA RNA binding domain ATP-sulfurylase PF01747.12 gi|284162366|ref|YP_003400989.1| - 6.3e-77 257.7 0.0 8.3e-77 257.3 0.0 1.1 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|284162366|ref|YP_003400989.1| - 1.1e-34 119.1 0.0 2e-34 118.2 0.0 1.4 2 0 0 2 2 2 1 PUA-like domain Hjc PF01870.13 gi|284162367|ref|YP_003400990.1| - 1.5e-30 104.6 0.0 2e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AA_kinase PF00696.23 gi|284162368|ref|YP_003400991.1| - 4.4e-47 160.6 3.2 5.1e-47 160.4 2.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family GatB_Yqey PF02637.13 gi|284162368|ref|YP_003400991.1| - 0.017 14.8 1.8 0.03 14.0 0.3 2.0 2 0 0 2 2 2 0 GatB domain XPG_N PF00752.12 gi|284162368|ref|YP_003400991.1| - 0.077 13.2 0.0 0.77 10.0 0.0 2.2 1 1 1 2 2 2 0 XPG N-terminal domain HD PF01966.17 gi|284162369|ref|YP_003400992.1| - 4.2e-12 46.1 0.2 6.6e-12 45.5 0.2 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|284162369|ref|YP_003400992.1| - 5.2e-05 22.5 0.3 0.0018 17.5 0.0 2.7 2 1 1 3 3 3 1 HDOD domain Rep_fac_C PF08542.6 gi|284162369|ref|YP_003400992.1| - 0.01 15.8 0.4 0.034 14.1 0.1 2.0 2 1 0 2 2 2 0 Replication factor C C-terminal domain Peptidase_M50 PF02163.17 gi|284162370|ref|YP_003400993.1| - 2.3e-27 95.2 0.0 1e-26 93.0 0.0 2.1 2 2 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|284162370|ref|YP_003400993.1| - 2.9e-14 52.6 0.8 1.5e-10 40.8 0.1 2.4 1 1 1 2 2 2 2 PDZ domain PDZ PF00595.19 gi|284162370|ref|YP_003400993.1| - 4.8e-10 39.4 2.3 1.8e-07 31.1 0.1 2.6 2 1 1 3 3 3 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|284162370|ref|YP_003400993.1| - 0.0069 16.1 0.5 0.13 12.0 0.1 2.2 1 1 1 2 2 2 1 Tricorn protease PDZ domain PDZ_1 PF12812.2 gi|284162370|ref|YP_003400993.1| - 0.013 15.3 0.1 0.043 13.7 0.0 1.9 2 0 0 2 2 2 0 PDZ-like domain GRASP55_65 PF04495.9 gi|284162370|ref|YP_003400993.1| - 0.11 12.5 0.0 0.46 10.4 0.0 2.0 1 1 1 2 2 2 0 GRASP55/65 PDZ-like domain Radical_SAM PF04055.16 gi|284162371|ref|YP_003400994.1| - 3.4e-23 82.6 0.2 2.7e-22 79.7 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|284162371|ref|YP_003400994.1| - 1.3e-10 41.3 0.0 2.9e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|284162371|ref|YP_003400994.1| - 1.4e-09 38.2 0.0 3.5e-09 36.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|284162371|ref|YP_003400994.1| - 0.044 14.1 2.2 0.16 12.3 1.5 2.0 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain CDC37_C PF08564.5 gi|284162371|ref|YP_003400994.1| - 0.049 13.4 0.0 2.6 7.9 0.0 2.9 2 1 1 3 3 3 0 Cdc37 C terminal domain TM2 PF05154.11 gi|284162371|ref|YP_003400994.1| - 0.13 12.5 0.1 0.3 11.3 0.1 1.6 1 0 0 1 1 1 0 TM2 domain Aminotran_3 PF00202.16 gi|284162372|ref|YP_003400995.1| - 2.1e-104 349.0 0.0 2.5e-104 348.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|284162372|ref|YP_003400995.1| - 0.02 13.8 0.0 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II PHO4 PF01384.15 gi|284162373|ref|YP_003400996.1| - 1.2e-58 198.3 32.0 1.5e-58 198.0 22.2 1.1 1 0 0 1 1 1 1 Phosphate transporter family PhoU_div PF01865.11 gi|284162374|ref|YP_003400997.1| - 5.1e-31 107.5 8.0 5.8e-31 107.3 5.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|284162374|ref|YP_003400997.1| - 0.00014 22.2 11.1 0.061 13.7 0.8 3.2 1 1 1 2 2 2 2 PhoU domain CBS PF00571.23 gi|284162375|ref|YP_003400998.1| - 2.6e-26 91.1 4.1 1.6e-13 50.1 0.4 2.0 2 0 0 2 2 2 2 CBS domain DHBP_synthase PF00926.14 gi|284162376|ref|YP_003400999.1| - 1.1e-66 223.7 0.0 1.3e-66 223.5 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|284162377|ref|YP_003401000.1| - 4.5e-51 171.5 0.0 7e-51 170.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.1 gi|284162377|ref|YP_003401000.1| - 3.2e-07 29.6 0.4 5.5e-07 28.8 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HemN_C PF06969.11 gi|284162377|ref|YP_003401000.1| - 1.7e-06 28.0 0.0 5.1e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 HemN C-terminal domain MarR PF01047.17 gi|284162377|ref|YP_003401000.1| - 3.3e-06 26.7 0.3 6.1e-06 25.8 0.2 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284162377|ref|YP_003401000.1| - 6.6e-06 25.7 0.2 1e-05 25.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|284162377|ref|YP_003401000.1| - 4.4e-05 23.7 0.2 7.1e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|284162377|ref|YP_003401000.1| - 0.00034 20.3 0.2 0.0009 18.9 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|284162377|ref|YP_003401000.1| - 0.00045 20.1 0.4 0.0012 18.7 0.4 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|284162377|ref|YP_003401000.1| - 0.00073 19.2 0.2 0.0014 18.3 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Crp PF00325.15 gi|284162377|ref|YP_003401000.1| - 0.0012 18.2 0.0 0.0023 17.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_11 PF08279.7 gi|284162377|ref|YP_003401000.1| - 0.0012 18.4 0.1 0.0026 17.3 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.5 gi|284162377|ref|YP_003401000.1| - 0.0015 18.1 0.4 0.0028 17.3 0.2 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain DDRGK PF09756.4 gi|284162377|ref|YP_003401000.1| - 0.0021 17.5 0.4 0.0031 16.9 0.3 1.2 1 0 0 1 1 1 1 DDRGK domain HTH_45 PF14947.1 gi|284162377|ref|YP_003401000.1| - 0.0027 17.5 0.4 0.0043 16.8 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|284162377|ref|YP_003401000.1| - 0.0087 16.1 0.3 0.013 15.5 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|284162377|ref|YP_003401000.1| - 0.014 15.3 0.2 0.033 14.1 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF505 PF04458.7 gi|284162377|ref|YP_003401000.1| - 0.014 13.5 0.6 0.025 12.7 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF505) HTH_36 PF13730.1 gi|284162377|ref|YP_003401000.1| - 0.032 14.3 0.1 0.052 13.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|284162377|ref|YP_003401000.1| - 0.032 14.1 0.4 0.063 13.1 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|284162377|ref|YP_003401000.1| - 0.039 13.6 0.5 0.068 12.8 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|284162377|ref|YP_003401000.1| - 0.042 13.5 0.1 0.094 12.4 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|284162377|ref|YP_003401000.1| - 0.073 12.7 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|284162377|ref|YP_003401000.1| - 0.086 12.4 0.2 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284162377|ref|YP_003401000.1| - 0.11 12.0 0.3 0.16 11.5 0.2 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|284162377|ref|YP_003401000.1| - 0.12 12.0 0.2 0.26 10.8 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HMG-CoA_red PF00368.13 gi|284162378|ref|YP_003401001.1| - 3.3e-95 318.8 0.8 3.9e-95 318.6 0.5 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase 2HCT PF03390.10 gi|284162378|ref|YP_003401001.1| - 0.018 13.4 0.2 0.031 12.6 0.1 1.3 1 0 0 1 1 1 0 2-hydroxycarboxylate transporter family DUF262 PF03235.9 gi|284162379|ref|YP_003401002.1| - 0.00083 19.3 0.2 0.00083 19.3 0.2 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF262 DUF1803 PF08820.5 gi|284162379|ref|YP_003401002.1| - 0.026 14.2 0.0 0.064 12.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) Glyoxal_oxid_N PF07250.6 gi|284162379|ref|YP_003401002.1| - 0.04 12.9 0.0 0.061 12.3 0.0 1.2 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus TIP49 PF06068.8 gi|284162380|ref|YP_003401003.1| - 4e-170 565.8 1.7 4.8e-170 565.5 1.2 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|284162380|ref|YP_003401003.1| - 5e-12 46.1 0.3 3.9e-09 36.8 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|284162380|ref|YP_003401003.1| - 1.4e-09 37.3 4.7 3.2e-07 29.6 0.0 3.1 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|284162380|ref|YP_003401003.1| - 2.5e-07 30.8 0.0 1.2e-05 25.3 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|284162380|ref|YP_003401003.1| - 3.3e-06 27.9 0.4 7e-05 23.6 0.2 2.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|284162380|ref|YP_003401003.1| - 7.1e-05 23.1 1.9 0.00017 21.9 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|284162380|ref|YP_003401003.1| - 0.00015 21.8 0.1 0.2 11.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.1 gi|284162380|ref|YP_003401003.1| - 0.00017 21.2 0.0 0.00052 19.7 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|284162380|ref|YP_003401003.1| - 0.00041 19.4 0.1 0.0018 17.3 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|284162380|ref|YP_003401003.1| - 0.00043 20.1 0.0 0.71 9.7 0.0 2.9 2 1 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|284162380|ref|YP_003401003.1| - 0.00086 18.8 0.4 0.021 14.3 0.1 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|284162380|ref|YP_003401003.1| - 0.0015 18.0 0.1 0.0041 16.5 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|284162380|ref|YP_003401003.1| - 0.0016 17.5 0.2 0.0045 16.0 0.1 1.7 2 0 0 2 2 2 1 Zeta toxin DnaB_C PF03796.10 gi|284162380|ref|YP_003401003.1| - 0.002 17.0 0.1 0.0042 16.0 0.1 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain T2SE PF00437.15 gi|284162380|ref|YP_003401003.1| - 0.0022 16.9 0.6 0.081 11.8 0.1 2.3 1 1 1 2 2 2 1 Type II/IV secretion system protein KaiC PF06745.8 gi|284162380|ref|YP_003401003.1| - 0.0042 16.2 0.1 0.038 13.1 0.0 2.5 2 0 0 2 2 2 1 KaiC Mg_chelatase PF01078.16 gi|284162380|ref|YP_003401003.1| - 0.0062 15.7 1.3 0.032 13.4 0.2 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|284162380|ref|YP_003401003.1| - 0.0063 16.2 0.2 0.036 13.8 0.0 2.4 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|284162380|ref|YP_003401003.1| - 0.0065 15.8 0.0 0.014 14.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|284162380|ref|YP_003401003.1| - 0.007 15.9 0.0 0.015 14.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|284162380|ref|YP_003401003.1| - 0.013 15.4 0.1 0.043 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain TFIID_20kDa PF03847.8 gi|284162380|ref|YP_003401003.1| - 0.021 15.1 1.0 0.069 13.4 0.2 2.3 3 0 0 3 3 1 0 Transcription initiation factor TFIID subunit A ResIII PF04851.10 gi|284162380|ref|YP_003401003.1| - 0.023 14.5 0.2 0.12 12.2 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|284162380|ref|YP_003401003.1| - 0.023 14.3 0.4 1.8 8.1 0.1 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein ATP-synt_ab PF00006.20 gi|284162380|ref|YP_003401003.1| - 0.026 14.0 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|284162380|ref|YP_003401003.1| - 0.034 14.3 0.0 0.079 13.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PhoH PF02562.11 gi|284162380|ref|YP_003401003.1| - 0.041 13.0 0.2 0.13 11.5 0.1 1.8 1 0 0 1 1 1 0 PhoH-like protein IPT PF01745.11 gi|284162380|ref|YP_003401003.1| - 0.045 12.9 0.0 0.46 9.6 0.0 2.1 2 0 0 2 2 2 0 Isopentenyl transferase DNA_pol3_delta PF06144.8 gi|284162380|ref|YP_003401003.1| - 0.048 13.1 0.1 0.1 12.1 0.1 1.5 1 0 0 1 1 1 0 DNA polymerase III, delta subunit GvpD PF07088.6 gi|284162380|ref|YP_003401003.1| - 0.066 11.5 0.1 0.21 9.8 0.0 1.7 1 1 1 2 2 2 0 GvpD gas vesicle protein AAA_33 PF13671.1 gi|284162380|ref|YP_003401003.1| - 0.076 12.8 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain Zot PF05707.7 gi|284162380|ref|YP_003401003.1| - 0.11 11.9 0.5 3.9 6.9 0.1 2.6 1 1 2 3 3 3 0 Zonular occludens toxin (Zot) Metalloenzyme PF01676.13 gi|284162381|ref|YP_003401004.1| - 2.1e-55 187.8 0.0 2.4e-55 187.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily PhosphMutase PF10143.4 gi|284162381|ref|YP_003401004.1| - 2.8e-43 147.5 0.0 4.2e-43 146.9 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Nit_Regul_Hom PF10126.4 gi|284162381|ref|YP_003401004.1| - 0.052 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF2070 PF09843.4 gi|284162382|ref|YP_003401005.1| - 1e-16 60.9 0.0 2.2e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) AsnC_trans_reg PF01037.16 gi|284162383|ref|YP_003401006.1| - 1.2e-14 53.7 0.1 1.3e-14 53.6 0.1 1.0 1 0 0 1 1 1 1 AsnC family NapD PF03927.8 gi|284162383|ref|YP_003401006.1| - 9e-06 25.4 0.4 1.2e-05 25.0 0.2 1.2 1 0 0 1 1 1 1 NapD protein Spt5-NGN PF03439.8 gi|284162383|ref|YP_003401006.1| - 0.002 17.8 0.1 0.0054 16.4 0.0 1.7 1 1 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section ACT_4 PF13291.1 gi|284162383|ref|YP_003401006.1| - 0.0042 17.3 0.6 0.058 13.7 0.0 2.1 1 1 1 2 2 2 1 ACT domain GYD PF08734.6 gi|284162383|ref|YP_003401006.1| - 0.0051 16.5 0.1 0.0054 16.4 0.1 1.2 1 0 0 1 1 1 1 GYD domain ABM PF03992.11 gi|284162383|ref|YP_003401006.1| - 0.033 14.2 0.1 0.076 13.0 0.0 1.6 1 1 1 2 2 2 0 Antibiotic biosynthesis monooxygenase Chlor_dismutase PF06778.7 gi|284162383|ref|YP_003401006.1| - 0.1 12.2 0.1 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Chlorite dismutase Topo-VIb_trans PF09239.6 gi|284162384|ref|YP_003401007.1| - 1.1e-64 216.8 0.0 1.9e-64 216.0 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|284162384|ref|YP_003401007.1| - 1.7e-16 59.8 0.0 3.8e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|284162384|ref|YP_003401007.1| - 4e-13 49.1 0.0 1.3e-12 47.5 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|284162384|ref|YP_003401007.1| - 0.0027 16.3 0.5 0.0055 15.2 0.0 1.7 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_5 PF14501.1 gi|284162384|ref|YP_003401007.1| - 0.0038 16.8 0.0 0.013 15.2 0.0 1.9 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|284162384|ref|YP_003401007.1| - 0.009 15.7 0.0 0.16 11.7 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain MAF_flag10 PF01973.13 gi|284162384|ref|YP_003401007.1| - 0.021 14.3 0.0 0.048 13.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF115 SapB_2 PF03489.12 gi|284162384|ref|YP_003401007.1| - 0.025 14.6 0.0 0.07 13.1 0.0 1.8 1 0 0 1 1 1 0 Saposin-like type B, region 2 HEAT_2 PF13646.1 gi|284162384|ref|YP_003401007.1| - 0.031 14.5 0.0 0.074 13.3 0.0 1.6 1 0 0 1 1 1 0 HEAT repeats Trehalase_Ca-bi PF07492.6 gi|284162384|ref|YP_003401007.1| - 0.048 12.9 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Neutral trehalase Ca2+ binding domain AA_kinase PF00696.23 gi|284162384|ref|YP_003401007.1| - 0.054 13.0 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 Amino acid kinase family DUF4290 PF14123.1 gi|284162384|ref|YP_003401007.1| - 0.064 12.4 0.2 0.11 11.6 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) Thioredoxin_3 PF13192.1 gi|284162385|ref|YP_003401008.1| - 3e-17 62.1 0.2 3.3e-17 62.0 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|284162385|ref|YP_003401008.1| - 1.1e-07 31.6 0.3 2.1e-07 30.8 0.0 1.7 2 0 0 2 2 2 1 Glutaredoxin DUF836 PF05768.9 gi|284162385|ref|YP_003401008.1| - 3.4e-06 27.2 0.1 4e-06 27.0 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|284162385|ref|YP_003401008.1| - 8.8e-05 22.6 0.2 0.0066 16.6 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|284162385|ref|YP_003401008.1| - 0.003 17.1 0.1 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|284162385|ref|YP_003401008.1| - 0.029 14.3 0.6 0.71 9.8 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin TraF PF13728.1 gi|284162385|ref|YP_003401008.1| - 0.036 13.5 0.0 0.044 13.2 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein IF2_N PF04760.10 gi|284162385|ref|YP_003401008.1| - 0.046 13.3 0.4 0.31 10.7 0.3 2.0 1 1 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Rdx PF10262.4 gi|284162385|ref|YP_003401008.1| - 0.074 13.0 0.1 0.24 11.4 0.0 1.8 1 1 0 1 1 1 0 Rdx family Radical_SAM PF04055.16 gi|284162386|ref|YP_003401009.1| - 5.3e-31 108.0 0.6 7.9e-31 107.4 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284162386|ref|YP_003401009.1| - 1.9e-14 53.9 0.6 4.5e-14 52.7 0.1 1.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284162386|ref|YP_003401009.1| - 4.5e-14 52.4 0.0 8.7e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF364 PF04016.7 gi|284162387|ref|YP_003401010.1| - 4.5e-33 113.6 0.0 6.2e-33 113.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|284162387|ref|YP_003401010.1| - 1.6e-11 44.1 0.0 2.9e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) tRNA-synt_1 PF00133.17 gi|284162388|ref|YP_003401011.1| - 3.7e-68 230.0 2.5 4.3e-48 163.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|284162388|ref|YP_003401011.1| - 4.1e-29 101.4 2.9 6.8e-11 41.4 0.0 4.2 3 1 1 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|284162388|ref|YP_003401011.1| - 1.5e-22 80.0 1.5 3.7e-22 78.7 1.0 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|284162388|ref|YP_003401011.1| - 4.5e-13 48.8 0.6 3.3e-11 42.8 0.0 2.8 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|284162388|ref|YP_003401011.1| - 1.1e-08 34.5 0.1 1.7e-05 24.0 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Bro-N PF02498.12 gi|284162388|ref|YP_003401011.1| - 0.0003 21.0 0.9 0.18 12.0 0.0 3.4 3 0 0 3 3 3 1 BRO family, N-terminal domain tRNA-synt_1d PF00750.14 gi|284162388|ref|YP_003401011.1| - 0.0012 17.7 0.6 0.0054 15.5 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (R) ABC_tran PF00005.22 gi|284162389|ref|YP_003401012.1| - 3.9e-37 127.5 0.0 6e-37 126.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284162389|ref|YP_003401012.1| - 4.1e-17 63.0 2.0 8.4e-12 45.6 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|284162389|ref|YP_003401012.1| - 3e-08 33.1 0.1 0.00015 20.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|284162389|ref|YP_003401012.1| - 4.5e-06 26.9 0.1 0.00074 19.7 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|284162389|ref|YP_003401012.1| - 0.00015 22.2 0.5 0.00031 21.1 0.4 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284162389|ref|YP_003401012.1| - 0.00086 18.5 0.0 0.01 15.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284162389|ref|YP_003401012.1| - 0.0014 18.0 0.1 0.003 17.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Miro PF08477.8 gi|284162389|ref|YP_003401012.1| - 0.0083 16.6 0.0 0.017 15.6 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein KdpD PF02702.12 gi|284162389|ref|YP_003401012.1| - 0.0097 15.0 0.0 0.019 14.1 0.0 1.5 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain UPF0079 PF02367.12 gi|284162389|ref|YP_003401012.1| - 0.024 14.2 0.0 0.067 12.8 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|284162389|ref|YP_003401012.1| - 0.027 13.6 0.0 0.044 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 HTH_11 PF08279.7 gi|284162389|ref|YP_003401012.1| - 0.042 13.5 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain DUF4162 PF13732.1 gi|284162389|ref|YP_003401012.1| - 0.06 13.8 0.1 0.17 12.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Ring_hydroxyl_B PF00866.13 gi|284162389|ref|YP_003401012.1| - 0.075 12.7 0.2 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Ring hydroxylating beta subunit Mg_chelatase PF01078.16 gi|284162389|ref|YP_003401012.1| - 0.086 11.9 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|284162389|ref|YP_003401012.1| - 0.09 12.7 0.0 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|284162389|ref|YP_003401012.1| - 0.09 12.1 0.4 6.9 6.0 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain Cytochrom_D1 PF02239.11 gi|284162389|ref|YP_003401012.1| - 0.097 10.9 0.0 0.14 10.4 0.0 1.2 1 0 0 1 1 1 0 Cytochrome D1 heme domain ABC2_membrane PF01061.19 gi|284162390|ref|YP_003401013.1| - 9.6e-39 132.7 25.1 9.6e-39 132.7 17.4 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|284162390|ref|YP_003401013.1| - 2.2e-17 63.1 23.8 2.2e-17 63.1 16.5 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|284162390|ref|YP_003401013.1| - 3.2e-05 23.2 23.8 4.6e-05 22.7 16.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|284162390|ref|YP_003401013.1| - 0.00064 18.6 17.2 0.0024 16.7 11.9 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein Radical_SAM PF04055.16 gi|284162391|ref|YP_003401014.1| - 5.9e-16 59.0 0.0 3e-13 50.2 0.0 2.2 1 1 1 2 2 2 2 Radical SAM superfamily BATS PF06968.8 gi|284162391|ref|YP_003401014.1| - 0.024 14.4 0.1 0.053 13.3 0.0 1.6 1 0 0 1 1 1 0 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|284162392|ref|YP_003401015.1| - 7.4e-23 81.5 1.6 1.2e-22 80.8 0.6 1.8 2 0 0 2 2 2 1 Radical SAM superfamily TIM-br_sig_trns PF09370.5 gi|284162392|ref|YP_003401015.1| - 0.043 12.8 0.0 0.097 11.7 0.0 1.6 1 0 0 1 1 1 0 TIM-barrel signal transduction protein IF2_N PF04760.10 gi|284162392|ref|YP_003401015.1| - 0.078 12.6 0.0 0.47 10.1 0.0 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Lyase_1 PF00206.15 gi|284162393|ref|YP_003401016.1| - 4.4e-61 206.7 0.0 8.4e-61 205.8 0.0 1.4 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|284162393|ref|YP_003401016.1| - 6.1e-30 103.0 0.5 1.5e-29 101.8 0.3 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus FumaraseC_C PF10415.4 gi|284162393|ref|YP_003401016.1| - 0.00023 21.1 0.3 0.0018 18.2 0.0 2.5 2 0 0 2 2 2 1 Fumarase C C-terminus ASL_C2 PF14698.1 gi|284162393|ref|YP_003401016.1| - 0.019 15.0 0.2 0.37 10.8 0.0 2.6 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal Rpr2 PF04032.11 gi|284162395|ref|YP_003401018.1| - 2.4e-16 59.3 1.5 3.9e-16 58.6 1.1 1.3 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Elf1 PF05129.8 gi|284162395|ref|YP_003401018.1| - 0.012 15.2 1.0 0.012 15.2 0.7 2.1 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like DZR PF12773.2 gi|284162395|ref|YP_003401018.1| - 0.1 12.4 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|284162395|ref|YP_003401018.1| - 0.2 10.9 1.8 2.4 7.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2225 PF09986.4 gi|284162395|ref|YP_003401018.1| - 0.29 10.5 6.1 1.4 8.2 4.3 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF3211 PF11485.3 gi|284162395|ref|YP_003401018.1| - 0.64 10.0 3.0 0.74 9.8 1.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3211) RNA_POL_M_15KD PF02150.11 gi|284162395|ref|YP_003401018.1| - 7.3 6.3 6.5 1.6e+02 2.0 4.4 2.3 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2082 PF09855.4 gi|284162395|ref|YP_003401018.1| - 7.8 6.4 6.8 4 7.3 0.3 2.4 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF964 PF06133.6 gi|284162396|ref|YP_003401019.1| - 1.1e-19 70.3 10.3 1.3e-19 70.2 7.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF964) Baculo_PEP_C PF04513.7 gi|284162396|ref|YP_003401019.1| - 0.018 14.8 2.2 0.025 14.4 1.5 1.3 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Latrotoxin_C PF15658.1 gi|284162396|ref|YP_003401019.1| - 0.021 14.6 2.6 1 9.2 0.2 2.0 1 1 1 2 2 2 0 Latrotoxin C-terminal domain OmpH PF03938.9 gi|284162396|ref|YP_003401019.1| - 0.14 12.0 5.1 0.17 11.8 3.5 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) CCDC-167 PF15188.1 gi|284162396|ref|YP_003401019.1| - 0.18 11.7 4.2 3.1 7.8 2.9 2.1 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 Vps39_1 PF10366.4 gi|284162396|ref|YP_003401019.1| - 0.26 11.3 2.1 0.33 11.0 1.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 1 AAA_23 PF13476.1 gi|284162396|ref|YP_003401019.1| - 2 8.6 8.0 2.5 8.3 5.6 1.1 1 0 0 1 1 1 0 AAA domain CBS PF00571.23 gi|284162397|ref|YP_003401020.1| - 2.9e-33 113.4 9.5 1.1e-17 63.4 0.1 3.4 4 0 0 4 4 4 2 CBS domain ParBc PF02195.13 gi|284162397|ref|YP_003401020.1| - 2.8e-11 43.3 2.0 3.6e-10 39.8 1.4 2.3 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|284162397|ref|YP_003401020.1| - 1.8e-06 27.8 0.1 1.6e-05 24.7 0.1 2.2 1 1 0 1 1 1 1 Putative ParB-like nuclease CodY PF06018.9 gi|284162397|ref|YP_003401020.1| - 0.02 14.1 0.3 0.037 13.3 0.2 1.5 1 0 0 1 1 1 0 CodY GAF-like domain DUF1015 PF06245.6 gi|284162397|ref|YP_003401020.1| - 0.043 12.3 0.0 0.082 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) PRC PF05239.11 gi|284162397|ref|YP_003401020.1| - 0.082 12.7 1.5 2.9 7.8 0.1 3.1 3 0 0 3 3 3 0 PRC-barrel domain PRA-PH PF01503.12 gi|284162398|ref|YP_003401021.1| - 2.8e-17 62.7 0.1 3.2e-17 62.5 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|284162398|ref|YP_003401021.1| - 6.3e-05 22.8 2.4 6.3e-05 22.8 1.7 1.7 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain SRP19 PF01922.12 gi|284162399|ref|YP_003401022.1| - 1.2e-23 83.4 1.7 1.4e-23 83.2 1.2 1.1 1 0 0 1 1 1 1 SRP19 protein YecM PF06185.7 gi|284162399|ref|YP_003401022.1| - 0.024 13.8 0.1 0.026 13.7 0.1 1.1 1 0 0 1 1 1 0 YecM protein Nuf2 PF03800.9 gi|284162399|ref|YP_003401022.1| - 0.041 13.8 0.0 0.046 13.7 0.0 1.1 1 0 0 1 1 1 0 Nuf2 family Chal_sti_synt_C PF02797.10 gi|284162399|ref|YP_003401022.1| - 0.046 13.6 0.1 0.055 13.3 0.1 1.1 1 0 0 1 1 1 0 Chalcone and stilbene synthases, C-terminal domain DUF4535 PF15054.1 gi|284162399|ref|YP_003401022.1| - 0.77 9.2 3.2 18 4.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4535) UPF0020 PF01170.13 gi|284162400|ref|YP_003401023.1| - 5e-28 97.8 0.0 7.1e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|284162400|ref|YP_003401023.1| - 3.8e-17 62.3 0.0 6.1e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284162400|ref|YP_003401023.1| - 1.5e-11 44.5 0.1 1.2e-10 41.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284162400|ref|YP_003401023.1| - 5.9e-10 38.9 0.0 1e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284162400|ref|YP_003401023.1| - 2.2e-07 31.1 0.0 4.1e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|284162400|ref|YP_003401023.1| - 1.4e-06 28.0 0.0 0.00023 20.7 0.0 2.4 2 0 0 2 2 2 1 DNA methylase THUMP PF02926.12 gi|284162400|ref|YP_003401023.1| - 1.5e-06 28.1 0.2 3.6e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 THUMP domain Methyltransf_18 PF12847.2 gi|284162400|ref|YP_003401023.1| - 3.4e-06 27.6 0.0 6.7e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|284162400|ref|YP_003401023.1| - 2.7e-05 23.6 0.0 4.3e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|284162400|ref|YP_003401023.1| - 0.00072 18.7 0.0 0.0015 17.6 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.10 gi|284162400|ref|YP_003401023.1| - 0.0014 18.0 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|284162400|ref|YP_003401023.1| - 0.033 13.9 0.0 0.27 10.9 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.11 gi|284162400|ref|YP_003401023.1| - 0.069 12.2 0.0 0.19 10.8 0.0 1.9 2 1 0 2 2 2 0 N-6 DNA Methylase Methyltransf_12 PF08242.7 gi|284162400|ref|YP_003401023.1| - 0.087 13.2 0.0 0.21 12.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Diphthamide_syn PF01866.12 gi|284162401|ref|YP_003401024.1| - 4.3e-88 295.4 0.0 5e-88 295.2 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein YcfA PF07927.7 gi|284162401|ref|YP_003401024.1| - 0.062 13.2 0.1 9.3 6.2 0.0 2.4 2 0 0 2 2 2 0 YcfA-like protein UPF0180 PF03698.8 gi|284162401|ref|YP_003401024.1| - 0.066 13.0 0.0 5 7.0 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Aconitase_C PF00694.14 gi|284162402|ref|YP_003401025.1| - 3.2e-20 72.5 0.0 4e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|284162402|ref|YP_003401025.1| - 1.9e-07 30.7 0.0 2.6e-05 23.7 0.0 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus AdoMet_dc PF02675.10 gi|284162403|ref|YP_003401026.1| - 4.3e-35 119.7 0.0 4.8e-35 119.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase QueF PF14489.1 gi|284162403|ref|YP_003401026.1| - 0.014 15.3 0.1 0.17 11.8 0.0 2.1 2 0 0 2 2 2 0 QueF-like protein CBS PF00571.23 gi|284162404|ref|YP_003401027.1| - 5.3e-37 125.3 6.0 1.4e-21 75.9 0.4 2.4 2 1 1 3 3 3 2 CBS domain PRC PF05239.11 gi|284162404|ref|YP_003401027.1| - 0.11 12.3 4.9 0.22 11.4 0.4 3.1 3 1 0 3 3 3 0 PRC-barrel domain DUF3659 PF12396.3 gi|284162404|ref|YP_003401027.1| - 0.91 9.2 4.7 2.5 7.8 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) CBS PF00571.23 gi|284162405|ref|YP_003401028.1| - 7.1e-60 198.5 7.9 3.6e-16 58.6 0.2 4.2 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.9 gi|284162405|ref|YP_003401028.1| - 0.00091 19.2 0.1 0.073 13.1 0.0 3.2 3 0 0 3 3 3 1 Ribosomal protein L9, C-terminal domain DNA_ligase_A_M PF01068.16 gi|284162406|ref|YP_003401029.1| - 2.4e-23 82.5 0.5 4.9e-23 81.5 0.4 1.5 1 1 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|284162406|ref|YP_003401029.1| - 1.6e-08 34.6 0.4 5.9e-08 32.7 0.1 2.2 2 1 0 2 2 2 1 RNA ligase DUF1910 PF08928.5 gi|284162407|ref|YP_003401030.1| - 0.07 13.1 0.4 0.31 11.0 0.2 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1910) DUF3343 PF11823.3 gi|284162407|ref|YP_003401030.1| - 0.096 11.9 0.0 0.27 10.5 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3343) Glu-tRNAGln PF02686.10 gi|284162408|ref|YP_003401031.1| - 2.9e-21 75.0 0.0 4.1e-21 74.5 0.0 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF896 PF05979.7 gi|284162408|ref|YP_003401031.1| - 0.00096 18.6 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF896) Amidase PF01425.16 gi|284162409|ref|YP_003401032.1| - 1e-145 485.9 0.0 1.2e-145 485.7 0.0 1.0 1 0 0 1 1 1 1 Amidase tRNA-synt_2d PF01409.15 gi|284162410|ref|YP_003401033.1| - 8.5e-57 192.1 0.0 9.6e-53 178.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|284162410|ref|YP_003401033.1| - 0.00017 21.2 0.0 0.0005 19.6 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|284162410|ref|YP_003401033.1| - 0.074 11.8 0.4 2.2 6.9 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) DHH PF01368.15 gi|284162411|ref|YP_003401034.1| - 2.1e-14 53.4 0.1 3.3e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|284162411|ref|YP_003401034.1| - 4.5e-14 51.8 0.5 1e-13 50.7 0.3 1.6 1 0 0 1 1 1 1 DHHA1 domain T2SE PF00437.15 gi|284162412|ref|YP_003401035.1| - 2.1e-50 171.1 0.0 3.4e-50 170.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|284162412|ref|YP_003401035.1| - 0.001 18.5 0.1 0.0078 15.6 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|284162412|ref|YP_003401035.1| - 0.0019 18.3 0.2 0.018 15.2 0.0 2.5 3 0 0 3 3 3 1 AAA domain ABC_tran PF00005.22 gi|284162412|ref|YP_003401035.1| - 0.0068 16.7 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|284162412|ref|YP_003401035.1| - 0.0076 15.7 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|284162412|ref|YP_003401035.1| - 0.013 16.2 0.6 0.14 12.9 0.0 2.8 2 2 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|284162412|ref|YP_003401035.1| - 0.016 15.1 0.0 0.1 12.5 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|284162412|ref|YP_003401035.1| - 0.016 14.6 0.0 0.033 13.6 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Septin PF00735.13 gi|284162412|ref|YP_003401035.1| - 0.064 12.2 0.4 0.11 11.4 0.0 1.5 2 0 0 2 2 2 0 Septin Dynamin_N PF00350.18 gi|284162412|ref|YP_003401035.1| - 0.13 12.0 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Dynamin family AAA_23 PF13476.1 gi|284162412|ref|YP_003401035.1| - 0.8 9.9 0.0 0.8 9.9 0.0 2.2 3 0 0 3 3 3 0 AAA domain T2SF PF00482.18 gi|284162413|ref|YP_003401036.1| - 5.6e-29 100.5 20.1 8.7e-17 61.1 0.8 4.3 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Ycf1 PF05758.7 gi|284162413|ref|YP_003401036.1| - 0.065 10.9 1.8 0.097 10.3 1.3 1.2 1 0 0 1 1 1 0 Ycf1 CNTF PF01110.12 gi|284162413|ref|YP_003401036.1| - 0.16 11.2 0.2 0.32 10.2 0.1 1.4 1 0 0 1 1 1 0 Ciliary neurotrophic factor PfkB PF00294.19 gi|284162414|ref|YP_003401037.1| - 1.6e-49 168.6 0.0 1.9e-49 168.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase NMT1 PF09084.6 gi|284162415|ref|YP_003401038.1| - 2e-09 37.3 0.8 4.5e-09 36.2 0.4 1.8 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|284162415|ref|YP_003401038.1| - 2.4e-08 33.6 2.9 2.7e-08 33.5 1.1 1.9 2 1 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|284162415|ref|YP_003401038.1| - 6.2e-05 22.4 0.0 9.9e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|284162415|ref|YP_003401038.1| - 0.00024 20.4 0.1 0.00047 19.4 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 SBP_bac_7 PF03480.8 gi|284162415|ref|YP_003401038.1| - 0.0015 17.6 0.0 0.0032 16.6 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 DctM PF06808.7 gi|284162416|ref|YP_003401039.1| - 3.8e-113 378.1 40.5 6.8e-113 377.3 28.1 1.4 1 0 0 1 1 1 1 DctM-like transporters DUF1850 PF08905.6 gi|284162417|ref|YP_003401040.1| - 5.1e-13 48.6 0.0 7.4e-13 48.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) CBS PF00571.23 gi|284162418|ref|YP_003401041.1| - 1.4e-47 159.1 7.7 8.4e-16 57.4 0.0 4.1 4 0 0 4 4 4 4 CBS domain BPD_transp_2 PF02653.11 gi|284162419|ref|YP_003401042.1| - 2e-49 167.9 39.5 2.3e-49 167.7 27.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.5 gi|284162419|ref|YP_003401042.1| - 0.007 15.8 0.7 0.039 13.4 0.0 2.4 2 0 0 2 2 2 1 Cytochrome oxidase complex assembly protein 1 BPD_transp_2 PF02653.11 gi|284162420|ref|YP_003401043.1| - 1.7e-43 148.4 36.7 2e-43 148.2 25.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|284162421|ref|YP_003401044.1| - 1.1e-36 126.9 0.0 1.3e-36 126.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|284162421|ref|YP_003401044.1| - 3.6e-20 72.0 0.0 5.2e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|284162421|ref|YP_003401044.1| - 9.2e-06 24.6 0.1 4.5e-05 22.3 0.0 2.0 2 1 0 2 2 2 1 Periplasmic binding protein domain LppC PF04348.8 gi|284162421|ref|YP_003401044.1| - 1.4e-05 23.8 0.1 2.2e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein VWA_2 PF13519.1 gi|284162421|ref|YP_003401044.1| - 0.0039 17.3 0.0 0.59 10.2 0.0 2.5 2 0 0 2 2 2 1 von Willebrand factor type A domain AhpC-TSA PF00578.16 gi|284162421|ref|YP_003401044.1| - 0.11 12.2 0.6 0.58 9.8 0.0 2.4 3 0 0 3 3 3 0 AhpC/TSA family ABC_tran PF00005.22 gi|284162422|ref|YP_003401045.1| - 1.5e-29 103.0 0.0 1.9e-29 102.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284162422|ref|YP_003401045.1| - 1.6e-10 41.4 0.4 5.6e-08 33.0 0.3 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|284162422|ref|YP_003401045.1| - 4.3e-10 39.0 0.0 1e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|284162422|ref|YP_003401045.1| - 2.2e-06 27.0 0.0 3.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284162422|ref|YP_003401045.1| - 2.4e-06 28.0 2.4 4.3e-06 27.2 1.7 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284162422|ref|YP_003401045.1| - 1.5e-05 24.3 0.1 0.00012 21.4 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain FtsK_SpoIIIE PF01580.13 gi|284162422|ref|YP_003401045.1| - 0.00048 19.6 0.0 0.0029 17.1 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family Arch_ATPase PF01637.13 gi|284162422|ref|YP_003401045.1| - 0.00052 19.7 0.0 0.0013 18.4 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|284162422|ref|YP_003401045.1| - 0.00067 19.1 0.6 0.0049 16.3 0.0 2.2 2 1 0 2 2 2 1 AAA-like domain MutS_V PF00488.16 gi|284162422|ref|YP_003401045.1| - 0.0011 18.3 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 MutS domain V T2SE PF00437.15 gi|284162422|ref|YP_003401045.1| - 0.0032 16.4 0.0 0.0059 15.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|284162422|ref|YP_003401045.1| - 0.0035 16.5 0.0 0.0058 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|284162422|ref|YP_003401045.1| - 0.0053 15.8 0.1 0.0086 15.1 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|284162422|ref|YP_003401045.1| - 0.012 15.0 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|284162422|ref|YP_003401045.1| - 0.012 15.6 0.0 0.14 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|284162422|ref|YP_003401045.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|284162422|ref|YP_003401045.1| - 0.017 15.2 0.1 0.027 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|284162422|ref|YP_003401045.1| - 0.02 14.8 0.1 0.043 13.7 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|284162422|ref|YP_003401045.1| - 0.022 15.5 0.2 0.037 14.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|284162422|ref|YP_003401045.1| - 0.035 13.8 0.0 0.075 12.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|284162422|ref|YP_003401045.1| - 0.035 13.9 0.0 0.067 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain Septin PF00735.13 gi|284162422|ref|YP_003401045.1| - 0.045 12.7 0.0 0.073 12.0 0.0 1.2 1 0 0 1 1 1 0 Septin IIGP PF05049.8 gi|284162422|ref|YP_003401045.1| - 0.048 12.4 0.0 0.069 11.9 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_19 PF13245.1 gi|284162422|ref|YP_003401045.1| - 0.077 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_13 PF13166.1 gi|284162422|ref|YP_003401045.1| - 0.096 11.1 0.6 0.15 10.5 0.2 1.4 1 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|284162422|ref|YP_003401045.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Dynamin family NACHT PF05729.7 gi|284162422|ref|YP_003401045.1| - 0.12 11.9 0.1 0.33 10.5 0.0 1.7 2 0 0 2 2 2 0 NACHT domain ATP_bind_1 PF03029.12 gi|284162422|ref|YP_003401045.1| - 0.14 11.7 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|284162422|ref|YP_003401045.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|284162423|ref|YP_003401046.1| - 1.1e-31 109.9 0.0 1.5e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284162423|ref|YP_003401046.1| - 5.6e-17 62.6 0.6 6.7e-15 55.8 0.4 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284162423|ref|YP_003401046.1| - 4.1e-10 39.2 0.8 7.9e-09 35.0 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|284162423|ref|YP_003401046.1| - 2e-09 38.0 0.2 3.4e-09 37.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284162423|ref|YP_003401046.1| - 7e-07 28.6 1.0 0.00097 18.2 0.4 2.3 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|284162423|ref|YP_003401046.1| - 2.1e-06 27.1 0.1 4.7e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|284162423|ref|YP_003401046.1| - 1.8e-05 23.5 0.7 0.0028 16.3 0.1 2.7 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|284162423|ref|YP_003401046.1| - 6.4e-05 23.0 0.6 0.00042 20.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|284162423|ref|YP_003401046.1| - 0.00021 21.1 0.0 0.002 17.9 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|284162423|ref|YP_003401046.1| - 0.00023 20.6 0.0 0.0052 16.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|284162423|ref|YP_003401046.1| - 0.0008 18.9 0.6 0.0084 15.5 0.1 2.0 1 1 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|284162423|ref|YP_003401046.1| - 0.0009 20.0 0.1 0.0015 19.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|284162423|ref|YP_003401046.1| - 0.001 18.9 0.5 0.0093 15.8 0.4 2.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|284162423|ref|YP_003401046.1| - 0.0015 17.7 0.0 0.0026 16.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|284162423|ref|YP_003401046.1| - 0.0025 17.5 0.1 0.011 15.4 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|284162423|ref|YP_003401046.1| - 0.0025 17.8 0.0 0.0083 16.1 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|284162423|ref|YP_003401046.1| - 0.0027 17.4 1.0 0.0088 15.7 0.0 2.0 2 1 0 2 2 2 1 Archaeal ATPase AAA_13 PF13166.1 gi|284162423|ref|YP_003401046.1| - 0.0066 14.9 0.4 0.021 13.3 0.1 1.8 1 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|284162423|ref|YP_003401046.1| - 0.015 14.4 0.0 0.025 13.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin MutS_V PF00488.16 gi|284162423|ref|YP_003401046.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 MutS domain V NB-ARC PF00931.17 gi|284162423|ref|YP_003401046.1| - 0.02 13.7 0.0 0.038 12.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|284162423|ref|YP_003401046.1| - 0.024 14.5 0.1 0.037 13.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|284162423|ref|YP_003401046.1| - 0.033 14.1 1.6 0.19 11.6 1.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|284162423|ref|YP_003401046.1| - 0.036 13.7 0.2 0.074 12.7 0.1 1.5 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|284162423|ref|YP_003401046.1| - 0.04 13.6 0.3 0.078 12.6 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|284162423|ref|YP_003401046.1| - 0.041 14.0 0.2 0.11 12.7 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|284162423|ref|YP_003401046.1| - 0.043 12.9 0.3 2 7.4 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.1 gi|284162423|ref|YP_003401046.1| - 0.055 13.0 0.3 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|284162423|ref|YP_003401046.1| - 0.11 11.3 0.3 0.25 10.2 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein PhoH PF02562.11 gi|284162423|ref|YP_003401046.1| - 0.12 11.6 0.0 0.22 10.7 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein ATP_bind_1 PF03029.12 gi|284162423|ref|YP_003401046.1| - 0.12 11.8 0.6 0.46 9.9 0.1 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|284162423|ref|YP_003401046.1| - 0.14 11.5 0.5 0.28 10.6 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|284162423|ref|YP_003401046.1| - 0.21 11.9 0.6 0.57 10.5 0.2 1.9 1 1 0 2 2 2 0 AAA domain Lactamase_B_2 PF12706.2 gi|284162424|ref|YP_003401047.1| - 3.5e-33 114.8 0.1 4.6e-33 114.4 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284162424|ref|YP_003401047.1| - 2.7e-13 50.0 0.6 1.9e-11 43.9 0.4 2.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|284162424|ref|YP_003401047.1| - 1.7e-05 24.2 0.0 3e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B_3 PF13483.1 gi|284162424|ref|YP_003401047.1| - 0.003 17.2 0.0 0.008 15.8 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Ribosomal_S10 PF00338.17 gi|284162425|ref|YP_003401048.1| - 5.6e-28 96.6 0.0 6.2e-28 96.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|284162426|ref|YP_003401049.1| - 9.3e-61 204.5 0.0 1.3e-60 204.0 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|284162426|ref|YP_003401049.1| - 2.2e-32 111.1 0.6 7e-32 109.5 0.2 2.1 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|284162426|ref|YP_003401049.1| - 1.1e-19 70.2 1.6 2.7e-19 69.0 1.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|284162426|ref|YP_003401049.1| - 1.4e-10 41.1 0.1 4e-10 39.6 0.1 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|284162426|ref|YP_003401049.1| - 4.8e-08 33.5 0.0 9.2e-07 29.3 0.0 2.6 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|284162426|ref|YP_003401049.1| - 6.6e-08 32.0 1.3 1.8e-07 30.6 0.9 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.7 gi|284162426|ref|YP_003401049.1| - 7.5e-05 21.9 0.2 0.00013 21.2 0.1 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|284162426|ref|YP_003401049.1| - 0.00011 22.0 0.2 0.59 9.9 0.1 3.8 2 1 1 3 3 3 1 Dynamin family FeoB_N PF02421.13 gi|284162426|ref|YP_003401049.1| - 0.0004 19.6 1.3 0.039 13.2 0.7 2.8 2 1 0 2 2 2 1 Ferrous iron transport protein B Ras PF00071.17 gi|284162426|ref|YP_003401049.1| - 0.0025 17.2 0.8 0.0094 15.3 0.1 2.0 1 1 1 2 2 2 1 Ras family SRPRB PF09439.5 gi|284162426|ref|YP_003401049.1| - 0.0039 16.4 0.1 0.086 12.0 0.1 2.2 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit cobW PF02492.14 gi|284162426|ref|YP_003401049.1| - 0.0052 16.2 0.2 0.04 13.3 0.3 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Septin PF00735.13 gi|284162426|ref|YP_003401049.1| - 0.011 14.7 0.0 0.024 13.6 0.0 1.5 1 1 0 1 1 1 0 Septin Arf PF00025.16 gi|284162426|ref|YP_003401049.1| - 0.039 13.2 0.2 0.53 9.4 0.1 2.5 2 0 0 2 2 2 0 ADP-ribosylation factor family Usp PF00582.21 gi|284162427|ref|YP_003401050.1| - 1.1e-23 83.9 0.4 1.3e-23 83.7 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|284162427|ref|YP_003401050.1| - 0.04 13.2 0.1 0.054 12.7 0.1 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel GYD PF08734.6 gi|284162427|ref|YP_003401050.1| - 0.046 13.4 0.1 0.091 12.4 0.0 1.6 1 1 1 2 2 2 0 GYD domain CutA1 PF03091.10 gi|284162428|ref|YP_003401051.1| - 1.8e-34 117.4 1.1 2e-34 117.3 0.7 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF552 PF04472.7 gi|284162428|ref|YP_003401051.1| - 0.12 12.2 0.2 0.51 10.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF552) NTP_transf_2 PF01909.18 gi|284162429|ref|YP_003401052.1| - 3.8e-09 36.7 0.0 1e-08 35.3 0.0 1.9 1 0 0 1 1 1 1 Nucleotidyltransferase domain GYD PF08734.6 gi|284162429|ref|YP_003401052.1| - 0.029 14.0 0.0 0.078 12.7 0.0 1.6 2 0 0 2 2 2 0 GYD domain ACP_syn_III_C PF08541.5 gi|284162429|ref|YP_003401052.1| - 0.15 12.1 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF165 PF02592.10 gi|284162430|ref|YP_003401053.1| - 2.8e-53 179.9 7.8 2.8e-53 179.9 5.4 2.0 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 AFOR_C PF01314.13 gi|284162431|ref|YP_003401054.1| - 1.7e-156 520.7 0.1 2.5e-156 520.1 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|284162431|ref|YP_003401054.1| - 6.3e-83 277.0 0.2 1.2e-82 276.1 0.1 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DUF483 PF04467.7 gi|284162432|ref|YP_003401055.1| - 3.7e-10 39.9 0.3 6.1e-10 39.2 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF483) ADK PF00406.17 gi|284162433|ref|YP_003401056.1| - 1.4e-63 213.2 0.0 1.7e-63 212.9 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|284162433|ref|YP_003401056.1| - 6.8e-19 67.2 5.0 1.1e-18 66.5 3.5 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|284162433|ref|YP_003401056.1| - 1.4e-10 41.9 0.7 2.1e-10 41.4 0.5 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284162433|ref|YP_003401056.1| - 6.7e-09 35.7 0.0 1.3e-08 34.7 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|284162433|ref|YP_003401056.1| - 2.4e-06 27.8 1.0 3.6e-06 27.3 0.1 1.7 2 0 0 2 2 2 1 AAA domain dNK PF01712.14 gi|284162433|ref|YP_003401056.1| - 0.00012 22.0 1.0 0.0015 18.4 0.0 2.1 2 0 0 2 2 2 1 Deoxynucleoside kinase Thymidylate_kin PF02223.12 gi|284162433|ref|YP_003401056.1| - 0.00038 19.8 1.1 0.84 8.9 0.1 2.9 2 1 1 3 3 3 2 Thymidylate kinase zf-ribbon_3 PF13248.1 gi|284162433|ref|YP_003401056.1| - 0.00054 19.0 1.4 0.00098 18.2 1.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Zeta_toxin PF06414.7 gi|284162433|ref|YP_003401056.1| - 0.0011 18.0 0.0 0.0031 16.6 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin zf-IS66 PF13005.2 gi|284162433|ref|YP_003401056.1| - 0.0064 16.4 3.3 1.9 8.5 0.1 2.8 3 0 0 3 3 3 2 zinc-finger binding domain of transposase IS66 HSP33 PF01430.14 gi|284162433|ref|YP_003401056.1| - 0.012 14.7 0.0 0.018 14.1 0.0 1.3 1 0 0 1 1 1 0 Hsp33 protein DUF2608 PF11019.3 gi|284162433|ref|YP_003401056.1| - 0.022 13.7 0.0 0.031 13.2 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2608) AAA_28 PF13521.1 gi|284162433|ref|YP_003401056.1| - 0.034 14.1 0.2 0.095 12.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|284162433|ref|YP_003401056.1| - 0.037 14.2 0.4 0.071 13.3 0.3 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) A2L_zn_ribbon PF08792.5 gi|284162433|ref|YP_003401056.1| - 0.042 13.3 2.8 3 7.4 0.9 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|284162433|ref|YP_003401056.1| - 0.044 13.4 0.6 0.1 12.2 0.4 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|284162433|ref|YP_003401056.1| - 0.05 13.4 0.5 0.1 12.4 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|284162433|ref|YP_003401056.1| - 0.056 13.1 5.9 1 9.1 0.3 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C4_Topoisom PF01396.14 gi|284162433|ref|YP_003401056.1| - 0.072 12.6 0.7 0.28 10.7 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger VASP_tetra PF08776.6 gi|284162433|ref|YP_003401056.1| - 0.076 12.3 0.3 0.86 8.9 0.0 2.6 2 0 0 2 2 2 0 VASP tetramerisation domain zf-C2HC5 PF06221.8 gi|284162433|ref|YP_003401056.1| - 0.09 12.5 0.1 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type CoaE PF01121.15 gi|284162433|ref|YP_003401056.1| - 0.11 11.9 0.0 13 5.1 0.0 2.2 2 0 0 2 2 2 0 Dephospho-CoA kinase DUF1451 PF07295.6 gi|284162433|ref|YP_003401056.1| - 0.13 12.0 0.6 0.26 11.0 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) HypA PF01155.14 gi|284162433|ref|YP_003401056.1| - 0.17 11.5 0.4 0.31 10.7 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|284162433|ref|YP_003401056.1| - 1.8 8.3 5.9 7.3 6.3 0.6 2.4 1 1 2 3 3 3 0 RNA polymerases M/15 Kd subunit zf-C2H2_3 PF13878.1 gi|284162433|ref|YP_003401056.1| - 6.4 6.4 6.0 3.1 7.4 0.3 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF2116 PF09889.4 gi|284162434|ref|YP_003401057.1| - 4.6e-24 83.9 0.9 5.3e-24 83.7 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ecl1 PF12855.2 gi|284162434|ref|YP_003401057.1| - 3.2e-05 23.1 0.9 4.2e-05 22.7 0.6 1.1 1 0 0 1 1 1 1 Life-span regulatory factor zinc_ribbon_2 PF13240.1 gi|284162434|ref|YP_003401057.1| - 0.0086 15.5 0.6 0.013 14.9 0.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284162434|ref|YP_003401057.1| - 0.012 14.8 0.4 0.016 14.4 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DUF2615 PF11027.3 gi|284162434|ref|YP_003401057.1| - 0.013 15.4 0.0 0.016 15.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2615) DUF2359 PF10151.4 gi|284162434|ref|YP_003401057.1| - 0.02 13.4 0.2 0.022 13.3 0.1 1.0 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2359) DUF581 PF04570.9 gi|284162434|ref|YP_003401057.1| - 0.042 13.1 3.0 0.23 10.7 2.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF581) DZR PF12773.2 gi|284162434|ref|YP_003401057.1| - 0.06 13.1 1.4 0.078 12.8 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon NinF PF05810.7 gi|284162434|ref|YP_003401057.1| - 0.15 11.9 0.6 0.17 11.6 0.4 1.1 1 0 0 1 1 1 0 NinF protein DUF2256 PF10013.4 gi|284162434|ref|YP_003401057.1| - 0.45 10.2 4.0 7.4 6.4 0.0 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Cytidylate_kin2 PF13189.1 gi|284162435|ref|YP_003401058.1| - 2.6e-28 99.1 2.1 7e-27 94.4 1.4 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|284162435|ref|YP_003401058.1| - 3e-21 76.0 0.8 4.8e-21 75.4 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284162435|ref|YP_003401058.1| - 2e-14 54.4 4.2 5.8e-14 52.9 2.9 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284162435|ref|YP_003401058.1| - 7.1e-08 32.4 0.1 3.5e-06 26.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|284162435|ref|YP_003401058.1| - 1.1e-06 28.5 0.5 3.2e-06 27.1 0.4 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|284162435|ref|YP_003401058.1| - 1.8e-06 27.9 0.1 3.2e-06 27.2 0.1 1.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|284162435|ref|YP_003401058.1| - 5.4e-05 22.6 0.2 7e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Cytidylate kinase ADK PF00406.17 gi|284162435|ref|YP_003401058.1| - 0.00017 21.5 0.2 0.00028 20.8 0.1 1.8 1 1 0 1 1 1 1 Adenylate kinase AAA PF00004.24 gi|284162435|ref|YP_003401058.1| - 0.0022 18.2 0.0 0.0035 17.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CoaE PF01121.15 gi|284162435|ref|YP_003401058.1| - 0.0088 15.4 0.1 0.27 10.6 0.0 2.1 1 1 1 2 2 2 1 Dephospho-CoA kinase OsmC PF02566.14 gi|284162435|ref|YP_003401058.1| - 0.02 15.0 0.3 0.15 12.2 0.1 2.1 2 1 0 2 2 2 0 OsmC-like protein AAA_19 PF13245.1 gi|284162435|ref|YP_003401058.1| - 0.022 14.5 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain Thymidylate_kin PF02223.12 gi|284162435|ref|YP_003401058.1| - 0.077 12.3 1.4 2.7 7.3 0.0 2.7 2 1 1 3 3 3 0 Thymidylate kinase PRK PF00485.13 gi|284162435|ref|YP_003401058.1| - 0.1 12.1 0.2 0.63 9.5 0.0 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF106 PF01956.11 gi|284162436|ref|YP_003401059.1| - 1.8e-32 112.2 4.6 1.8e-32 112.2 3.2 1.7 1 1 1 2 2 2 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|284162436|ref|YP_003401059.1| - 0.00049 19.8 5.6 0.00049 19.8 3.9 1.6 1 1 0 2 2 2 1 60Kd inner membrane protein DUF4199 PF13858.1 gi|284162436|ref|YP_003401059.1| - 0.48 10.3 11.1 0.24 11.2 0.9 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF4199) SecY PF00344.15 gi|284162437|ref|YP_003401060.1| - 6.1e-96 321.3 19.1 7.8e-96 320.9 13.2 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|284162437|ref|YP_003401060.1| - 1.4e-08 34.0 1.4 4.3e-08 32.5 1.0 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p Phage_holin_5 PF06946.6 gi|284162437|ref|YP_003401060.1| - 0.2 11.8 0.0 0.2 11.8 0.0 2.6 3 0 0 3 3 3 0 Phage holin Ninjurin PF04923.7 gi|284162437|ref|YP_003401060.1| - 1.2 8.9 7.2 0.096 12.4 0.9 2.3 2 1 0 2 2 2 0 Ninjurin Ribosomal_L18e PF00828.14 gi|284162438|ref|YP_003401061.1| - 3.6e-35 121.1 0.1 6.5e-35 120.3 0.1 1.4 1 1 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L19e PF01280.15 gi|284162438|ref|YP_003401061.1| - 0.066 12.9 8.6 0.14 11.9 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L19e HTH_27 PF13463.1 gi|284162438|ref|YP_003401061.1| - 0.07 13.4 0.1 0.25 11.7 0.0 2.0 3 0 0 3 3 3 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|284162438|ref|YP_003401061.1| - 0.1 12.4 0.1 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix Ribosomal_L30 PF00327.15 gi|284162439|ref|YP_003401062.1| - 1.1e-21 76.1 0.5 2e-21 75.3 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e FeS PF04060.8 gi|284162439|ref|YP_003401062.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative Fe-S cluster Ribosomal_S5 PF00333.15 gi|284162440|ref|YP_003401063.1| - 3.9e-28 96.9 1.8 6.9e-28 96.2 1.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|284162440|ref|YP_003401063.1| - 7.3e-25 86.0 0.3 1.1e-24 85.4 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|284162441|ref|YP_003401064.1| - 9.7e-39 132.2 0.0 1.2e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|284162442|ref|YP_003401065.1| - 1.1e-57 193.9 9.6 1.3e-57 193.7 6.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HxlR PF01638.12 gi|284162442|ref|YP_003401065.1| - 0.0002 20.9 0.2 0.14 11.7 0.0 2.2 2 0 0 2 2 2 2 HxlR-like helix-turn-helix HTH_12 PF08461.5 gi|284162442|ref|YP_003401065.1| - 0.021 14.5 2.8 0.14 11.8 1.3 2.4 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain SHOCT PF09851.4 gi|284162442|ref|YP_003401065.1| - 0.032 13.7 0.2 0.032 13.7 0.2 2.4 3 0 0 3 3 3 0 Short C-terminal domain DUF3977 PF13122.1 gi|284162442|ref|YP_003401065.1| - 0.061 13.1 0.5 2.3 8.0 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3977) LexA_DNA_bind PF01726.11 gi|284162442|ref|YP_003401065.1| - 0.086 12.4 0.3 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain HTH_24 PF13412.1 gi|284162442|ref|YP_003401065.1| - 0.38 10.1 4.5 1.4 8.3 0.2 2.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Wbp11 PF09429.5 gi|284162442|ref|YP_003401065.1| - 2.2 8.3 7.1 4.8 7.2 4.9 1.6 1 0 0 1 1 1 0 WW domain binding protein 11 Ribosomal_L32e PF01655.13 gi|284162443|ref|YP_003401066.1| - 3.9e-37 126.6 0.3 4.9e-37 126.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|284162444|ref|YP_003401067.1| - 4.3e-25 88.0 2.6 1.7e-12 47.6 0.2 2.2 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|284162445|ref|YP_003401068.1| - 6.7e-28 97.1 0.1 9.1e-28 96.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 YjcQ PF09639.5 gi|284162445|ref|YP_003401068.1| - 0.028 14.4 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 YjcQ protein Ribosomal_S14 PF00253.16 gi|284162446|ref|YP_003401069.1| - 1.1e-21 75.9 6.0 1.2e-21 75.8 4.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_L37ae PF01780.14 gi|284162446|ref|YP_003401069.1| - 0.012 15.4 0.8 0.014 15.2 0.6 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF4428 PF14471.1 gi|284162446|ref|YP_003401069.1| - 0.015 15.0 0.2 0.02 14.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) zf-P11 PF03854.9 gi|284162446|ref|YP_003401069.1| - 0.031 13.7 0.4 0.042 13.3 0.3 1.2 1 0 0 1 1 1 0 P-11 zinc finger DZR PF12773.2 gi|284162446|ref|YP_003401069.1| - 0.085 12.6 1.4 0.13 12.0 0.9 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF1451 PF07295.6 gi|284162446|ref|YP_003401069.1| - 0.098 12.4 0.2 0.12 12.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) FYVE PF01363.16 gi|284162446|ref|YP_003401069.1| - 1.2 9.0 4.5 1.6 8.7 3.1 1.3 1 1 0 1 1 1 0 FYVE zinc finger Prim_Zn_Ribbon PF08273.7 gi|284162446|ref|YP_003401069.1| - 3.5 7.7 5.5 69 3.6 3.8 2.1 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Ribosomal_L5_C PF00673.16 gi|284162447|ref|YP_003401070.1| - 2.6e-26 91.1 0.0 4.7e-26 90.3 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|284162447|ref|YP_003401070.1| - 4.2e-17 61.6 0.1 9.9e-17 60.4 0.1 1.7 2 0 0 2 2 2 1 Ribosomal protein L5 DUF2102 PF09875.4 gi|284162447|ref|YP_003401070.1| - 0.11 12.0 0.5 0.21 11.1 0.4 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2102) RELT PF12606.3 gi|284162447|ref|YP_003401070.1| - 0.16 11.1 0.1 0.16 11.1 0.0 1.8 2 0 0 2 2 2 0 Tumour necrosis factor receptor superfamily member 19 Ribosomal_S4e PF00900.15 gi|284162448|ref|YP_003401071.1| - 6.4e-26 89.8 1.6 1.1e-25 89.0 0.7 1.8 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.7 gi|284162448|ref|YP_003401071.1| - 6.1e-13 48.3 3.8 6.1e-13 48.3 2.6 1.8 2 0 0 2 2 2 1 RS4NT (NUC023) domain S4 PF01479.20 gi|284162448|ref|YP_003401071.1| - 1.2e-09 37.4 0.1 4.3e-09 35.6 0.0 1.9 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|284162448|ref|YP_003401071.1| - 2.1e-05 24.0 0.6 5.3e-05 22.7 0.1 2.0 2 0 0 2 2 2 1 KOW motif tRNA_SAD PF07973.9 gi|284162448|ref|YP_003401071.1| - 0.042 13.7 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Threonyl and Alanyl tRNA synthetase second additional domain Ribosomal_S28e PF01200.13 gi|284162448|ref|YP_003401071.1| - 0.094 12.4 0.1 0.97 9.2 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein S28e KOW PF00467.24 gi|284162449|ref|YP_003401072.1| - 2.3e-08 33.4 4.4 5.5e-08 32.2 3.0 1.7 1 0 0 1 1 1 1 KOW motif PSI_PsaE PF02427.12 gi|284162449|ref|YP_003401072.1| - 0.061 12.7 0.6 0.12 11.7 0.4 1.5 1 1 0 1 1 1 0 Photosystem I reaction centre subunit IV / PsaE Methyltrans_RNA PF04452.9 gi|284162449|ref|YP_003401072.1| - 0.078 12.0 0.1 0.11 11.6 0.1 1.3 1 0 0 1 1 1 0 RNA methyltransferase DNA_gyraseA_C PF03989.8 gi|284162449|ref|YP_003401072.1| - 0.13 11.6 2.4 1.3 8.3 0.6 2.3 2 0 0 2 2 2 0 DNA gyrase C-terminal domain, beta-propeller Ribosomal_L14 PF00238.14 gi|284162450|ref|YP_003401073.1| - 4.3e-40 136.2 0.1 4.9e-40 136.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e EutN_CcmL PF03319.8 gi|284162450|ref|YP_003401073.1| - 0.052 13.9 0.6 0.25 11.7 0.1 2.2 1 1 2 3 3 3 0 Ethanolamine utilisation protein EutN/carboxysome Ribosomal_S17 PF00366.15 gi|284162451|ref|YP_003401074.1| - 1.9e-24 85.4 2.1 2.5e-24 85.0 1.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|284162452|ref|YP_003401075.1| - 2.1e-27 94.5 0.6 2.3e-27 94.4 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|284162453|ref|YP_003401076.1| - 2.8e-18 65.3 9.0 3e-18 65.2 6.2 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.15 gi|284162454|ref|YP_003401077.1| - 5e-16 58.6 0.1 9.5e-16 57.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|284162454|ref|YP_003401077.1| - 7.8e-12 44.5 0.2 2.7e-11 42.8 0.1 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|284162454|ref|YP_003401077.1| - 0.0041 16.7 4.1 0.0056 16.3 0.2 2.7 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|284162454|ref|YP_003401077.1| - 0.12 12.1 4.7 0.18 11.5 1.3 2.6 3 0 0 3 3 3 0 KH domain A1_Propeptide PF07966.7 gi|284162454|ref|YP_003401077.1| - 0.12 12.2 0.1 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 A1 Propeptide Ribosomal_L22 PF00237.14 gi|284162455|ref|YP_003401078.1| - 1.1e-32 112.1 0.2 1.3e-32 111.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|284162456|ref|YP_003401079.1| - 3.4e-27 93.8 0.2 4.6e-27 93.4 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 AsiA PF09010.5 gi|284162456|ref|YP_003401079.1| - 0.081 12.8 0.4 0.14 12.0 0.1 1.5 2 0 0 2 2 2 0 Anti-Sigma Factor A DUF2540 PF10802.3 gi|284162456|ref|YP_003401079.1| - 0.1 12.2 0.3 0.15 11.7 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) MerR_1 PF13411.1 gi|284162456|ref|YP_003401079.1| - 0.16 11.7 1.2 12 5.8 0.3 2.2 1 1 1 2 2 2 0 MerR HTH family regulatory protein Ribosomal_L2_C PF03947.13 gi|284162457|ref|YP_003401080.1| - 4.8e-50 168.7 0.4 2.6e-49 166.3 0.5 1.8 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|284162457|ref|YP_003401080.1| - 5.9e-14 51.8 0.0 1.6e-13 50.3 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|284162458|ref|YP_003401081.1| - 2.6e-16 59.3 0.7 3.6e-16 58.8 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L23 Ribosomal_S7e PF01251.13 gi|284162458|ref|YP_003401081.1| - 0.057 12.8 0.2 0.061 12.7 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein S7e Ribosomal_L4 PF00573.17 gi|284162459|ref|YP_003401082.1| - 3.8e-50 169.9 0.7 4.4e-50 169.7 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family ETRAMP PF09716.5 gi|284162459|ref|YP_003401082.1| - 0.076 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Ribosomal_L3 PF00297.17 gi|284162460|ref|YP_003401083.1| - 3.7e-81 272.3 0.4 4.3e-81 272.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 STE PF02200.11 gi|284162460|ref|YP_003401083.1| - 0.019 15.1 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 STE like transcription factor Methyltrn_RNA_3 PF02598.12 gi|284162461|ref|YP_003401084.1| - 5.9e-64 216.2 0.0 7.3e-64 215.9 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|284162461|ref|YP_003401084.1| - 0.0041 16.9 0.0 1.4 8.7 0.0 2.2 2 0 0 2 2 2 2 SpoU rRNA Methylase family IL34 PF15036.1 gi|284162461|ref|YP_003401084.1| - 0.057 12.9 0.1 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 Interleukin 34 DUF257 PF03192.8 gi|284162462|ref|YP_003401085.1| - 0.31 10.3 5.4 2.8 7.1 0.4 2.1 2 0 0 2 2 2 0 Pyrococcus protein of unknown function, DUF257 DUF3227 PF11537.3 gi|284162463|ref|YP_003401086.1| - 6.4e-20 71.1 0.6 6.9e-20 71.0 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3227) KaiC PF06745.8 gi|284162464|ref|YP_003401087.1| - 1.6e-93 311.9 3.7 4.9e-49 166.4 0.0 2.0 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|284162464|ref|YP_003401087.1| - 1.8e-28 99.2 0.0 4.8e-13 48.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain RecA PF00154.16 gi|284162464|ref|YP_003401087.1| - 2.7e-13 49.6 0.0 8.5e-06 25.0 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|284162464|ref|YP_003401087.1| - 1.6e-12 46.8 0.9 3.9e-05 22.6 0.0 2.9 2 2 0 2 2 2 2 DnaB-like helicase C terminal domain IstB_IS21 PF01695.12 gi|284162464|ref|YP_003401087.1| - 3.3e-11 42.9 0.7 1.4e-05 24.5 0.0 3.1 4 0 0 4 4 3 2 IstB-like ATP binding protein AAA_24 PF13479.1 gi|284162464|ref|YP_003401087.1| - 1.8e-10 40.7 0.1 5.5e-05 22.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|284162464|ref|YP_003401087.1| - 3.4e-09 36.5 0.0 0.0042 16.7 0.0 3.2 3 0 0 3 3 3 2 NACHT domain AAA_19 PF13245.1 gi|284162464|ref|YP_003401087.1| - 5.8e-09 35.5 0.2 7e-05 22.4 0.0 2.5 2 0 0 2 2 2 2 Part of AAA domain AAA_22 PF13401.1 gi|284162464|ref|YP_003401087.1| - 6.4e-09 36.0 0.4 0.0041 17.2 0.0 2.7 2 2 0 2 2 2 2 AAA domain Rad51 PF08423.6 gi|284162464|ref|YP_003401087.1| - 1.1e-08 34.3 1.4 3.6e-06 26.0 0.2 3.1 2 2 0 2 2 2 1 Rad51 DUF2075 PF09848.4 gi|284162464|ref|YP_003401087.1| - 5.3e-08 32.2 0.4 0.0026 16.8 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|284162464|ref|YP_003401087.1| - 2.2e-07 30.0 0.6 0.0027 16.6 0.0 2.4 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_10 PF12846.2 gi|284162464|ref|YP_003401087.1| - 3e-07 30.1 0.1 0.0058 16.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain ABC_tran PF00005.22 gi|284162464|ref|YP_003401087.1| - 3e-07 30.8 2.2 0.0014 18.9 0.0 2.5 2 1 0 2 2 2 2 ABC transporter GvpD PF07088.6 gi|284162464|ref|YP_003401087.1| - 6.3e-07 28.0 4.2 0.0027 16.0 0.4 3.3 1 1 1 2 2 2 2 GvpD gas vesicle protein AAA_14 PF13173.1 gi|284162464|ref|YP_003401087.1| - 2e-06 27.7 0.5 0.0074 16.1 0.0 2.8 2 2 0 2 2 2 2 AAA domain AAA PF00004.24 gi|284162464|ref|YP_003401087.1| - 2.1e-06 27.9 2.9 6.8e-05 23.0 0.1 2.6 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|284162464|ref|YP_003401087.1| - 3.7e-06 26.5 0.1 0.046 13.2 0.0 2.4 2 1 0 2 2 2 2 DEAD/DEAH box helicase Arch_ATPase PF01637.13 gi|284162464|ref|YP_003401087.1| - 5.8e-06 26.1 0.4 0.054 13.1 0.0 2.3 2 0 0 2 2 2 2 Archaeal ATPase AAA_18 PF13238.1 gi|284162464|ref|YP_003401087.1| - 6.7e-06 26.4 5.2 0.0054 17.0 0.7 3.2 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|284162464|ref|YP_003401087.1| - 6.9e-06 26.1 0.1 0.0013 18.7 0.0 2.7 3 0 0 3 3 2 1 AAA ATPase domain SRP54 PF00448.17 gi|284162464|ref|YP_003401087.1| - 1e-05 25.0 0.0 0.0038 16.6 0.0 2.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_31 PF13614.1 gi|284162464|ref|YP_003401087.1| - 1.1e-05 25.3 0.0 0.19 11.6 0.0 2.5 2 1 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|284162464|ref|YP_003401087.1| - 1.8e-05 24.0 0.6 0.024 13.8 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein ResIII PF04851.10 gi|284162464|ref|YP_003401087.1| - 2.9e-05 24.0 0.1 0.11 12.3 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit ArsA_ATPase PF02374.10 gi|284162464|ref|YP_003401087.1| - 4.7e-05 22.5 0.3 0.0019 17.3 0.1 2.3 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_29 PF13555.1 gi|284162464|ref|YP_003401087.1| - 7e-05 22.2 6.1 0.014 14.9 0.1 3.1 3 0 0 3 3 3 2 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|284162464|ref|YP_003401087.1| - 8.8e-05 22.5 0.0 0.051 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|284162464|ref|YP_003401087.1| - 0.00011 21.1 1.1 0.00041 19.2 0.0 2.2 2 0 0 2 2 2 1 ArgK protein MobB PF03205.9 gi|284162464|ref|YP_003401087.1| - 0.00012 21.8 1.0 0.071 12.8 0.0 2.6 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|284162464|ref|YP_003401087.1| - 0.00012 21.6 0.1 0.058 12.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|284162464|ref|YP_003401087.1| - 0.00015 21.3 0.7 0.079 12.4 0.0 2.5 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain CbiA PF01656.18 gi|284162464|ref|YP_003401087.1| - 0.0002 20.8 6.6 0.054 12.9 0.4 2.8 2 2 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain Sigma54_activat PF00158.21 gi|284162464|ref|YP_003401087.1| - 0.00024 20.6 0.1 0.096 12.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Miro PF08477.8 gi|284162464|ref|YP_003401087.1| - 0.00027 21.4 1.6 0.055 13.9 0.0 3.0 3 1 0 3 3 2 1 Miro-like protein Zot PF05707.7 gi|284162464|ref|YP_003401087.1| - 0.00029 20.3 0.1 0.62 9.4 0.0 2.4 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|284162464|ref|YP_003401087.1| - 0.00042 19.8 4.0 0.12 11.8 0.1 2.8 2 1 0 3 3 3 2 FtsK/SpoIIIE family TIP49 PF06068.8 gi|284162464|ref|YP_003401087.1| - 0.00059 18.6 0.2 0.011 14.5 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus AAA_11 PF13086.1 gi|284162464|ref|YP_003401087.1| - 0.00073 19.1 0.0 0.16 11.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|284162464|ref|YP_003401087.1| - 0.00094 18.8 1.5 0.26 10.9 0.1 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_23 PF13476.1 gi|284162464|ref|YP_003401087.1| - 0.001 19.4 9.8 0.13 12.5 0.2 2.9 3 0 0 3 3 2 2 AAA domain Zeta_toxin PF06414.7 gi|284162464|ref|YP_003401087.1| - 0.0011 18.1 1.7 0.1 11.6 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin MMR_HSR1 PF01926.18 gi|284162464|ref|YP_003401087.1| - 0.0011 18.8 1.6 0.02 14.8 0.0 2.5 2 1 0 2 2 2 1 50S ribosome-binding GTPase DUF258 PF03193.11 gi|284162464|ref|YP_003401087.1| - 0.0016 17.6 0.3 1.6 7.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 cobW PF02492.14 gi|284162464|ref|YP_003401087.1| - 0.0034 16.8 0.8 0.25 10.7 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_35 PF14516.1 gi|284162464|ref|YP_003401087.1| - 0.0035 16.0 0.0 0.45 9.0 0.0 2.3 2 1 0 2 2 2 1 AAA-like domain RNA_helicase PF00910.17 gi|284162464|ref|YP_003401087.1| - 0.0038 17.3 0.1 0.22 11.7 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_5 PF07728.9 gi|284162464|ref|YP_003401087.1| - 0.0039 16.9 0.2 0.17 11.5 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|284162464|ref|YP_003401087.1| - 0.0083 16.9 8.4 0.029 15.1 0.1 2.9 3 1 0 3 3 2 1 AAA domain AAA_33 PF13671.1 gi|284162464|ref|YP_003401087.1| - 0.0087 15.9 0.0 1.9 8.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain FMN_dh PF01070.13 gi|284162464|ref|YP_003401087.1| - 0.015 14.1 0.1 0.023 13.5 0.0 1.1 1 0 0 1 1 1 0 FMN-dependent dehydrogenase AAA_15 PF13175.1 gi|284162464|ref|YP_003401087.1| - 0.015 14.3 0.2 0.16 10.9 0.1 2.2 2 0 0 2 2 2 0 AAA ATPase domain Bac_DnaA PF00308.13 gi|284162464|ref|YP_003401087.1| - 0.017 14.7 0.4 0.72 9.4 0.0 2.5 2 1 0 2 2 2 0 Bacterial dnaA protein MipZ PF09140.6 gi|284162464|ref|YP_003401087.1| - 0.019 14.0 0.0 0.9 8.5 0.0 2.4 2 0 0 2 2 2 0 ATPase MipZ TrwB_AAD_bind PF10412.4 gi|284162464|ref|YP_003401087.1| - 0.021 13.4 2.5 0.48 8.9 0.2 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Septin PF00735.13 gi|284162464|ref|YP_003401087.1| - 0.028 13.4 0.1 1.4 7.8 0.0 2.4 2 0 0 2 2 2 0 Septin ATP_bind_1 PF03029.12 gi|284162464|ref|YP_003401087.1| - 0.045 13.3 0.2 2.4 7.6 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_21 PF13304.1 gi|284162464|ref|YP_003401087.1| - 0.049 13.5 0.7 1.7 8.5 0.1 2.5 2 0 0 2 2 2 0 AAA domain SecA_DEAD PF07517.9 gi|284162464|ref|YP_003401087.1| - 0.053 12.7 1.9 0.09 12.0 0.1 2.2 3 0 0 3 3 2 0 SecA DEAD-like domain Viral_helicase1 PF01443.13 gi|284162464|ref|YP_003401087.1| - 0.065 12.7 0.1 3.3 7.1 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Dot_icm_IcmQ PF09475.5 gi|284162464|ref|YP_003401087.1| - 0.08 12.1 0.1 0.19 10.9 0.0 1.6 1 0 0 1 1 1 0 Dot/Icm secretion system protein (dot_icm_IcmQ) PRK PF00485.13 gi|284162464|ref|YP_003401087.1| - 0.088 12.3 0.2 5.8 6.4 0.1 2.6 2 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.10 gi|284162464|ref|YP_003401087.1| - 0.09 12.4 10.7 0.07 12.8 0.9 3.7 3 1 0 3 3 3 0 NTPase PduV-EutP PF10662.4 gi|284162464|ref|YP_003401087.1| - 0.2 11.1 2.5 0.92 8.9 0.0 2.5 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_ATPase PF09818.4 gi|284162464|ref|YP_003401087.1| - 0.31 9.5 3.1 1.3 7.5 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|284162464|ref|YP_003401087.1| - 0.42 9.4 3.3 0.55 9.0 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain UvrD-helicase PF00580.16 gi|284162464|ref|YP_003401087.1| - 0.82 8.9 2.8 1.1 8.4 0.1 2.2 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain FeoB_N PF02421.13 gi|284162464|ref|YP_003401087.1| - 1.1 8.5 4.9 4.7 6.4 0.0 2.8 3 0 0 3 3 2 0 Ferrous iron transport protein B HTH_5 PF01022.15 gi|284162465|ref|YP_003401088.1| - 1.1e-11 44.1 0.0 1.7e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|284162465|ref|YP_003401088.1| - 5.3e-10 38.9 0.1 7.9e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|284162465|ref|YP_003401088.1| - 0.00021 20.8 0.2 0.00061 19.3 0.2 1.7 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|284162465|ref|YP_003401088.1| - 0.012 15.6 0.1 0.039 13.9 0.1 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|284162465|ref|YP_003401088.1| - 0.017 14.4 0.0 0.28 10.5 0.0 2.2 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding MCPsignal PF00015.16 gi|284162466|ref|YP_003401089.1| - 1.3e-50 171.8 50.9 7.2e-48 162.9 21.4 3.1 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|284162466|ref|YP_003401089.1| - 1.3e-07 31.7 8.3 0.02 15.0 0.0 6.0 5 3 2 7 7 7 2 HAMP domain DUF948 PF06103.6 gi|284162466|ref|YP_003401089.1| - 0.00019 21.2 24.3 0.3 10.9 1.0 6.0 4 2 2 7 7 5 3 Bacterial protein of unknown function (DUF948) PhageMin_Tail PF10145.4 gi|284162466|ref|YP_003401089.1| - 0.0013 18.4 25.7 0.0023 17.6 0.8 3.2 2 1 1 3 3 3 1 Phage-related minor tail protein T4SS PF07996.6 gi|284162466|ref|YP_003401089.1| - 0.0036 17.1 9.1 0.0036 17.1 6.3 3.7 3 1 1 4 4 4 1 Type IV secretion system proteins Syntaxin PF00804.20 gi|284162466|ref|YP_003401089.1| - 0.019 15.1 41.6 0.13 12.4 2.7 6.5 3 2 1 4 4 3 0 Syntaxin Rota_NSP4 PF01452.11 gi|284162466|ref|YP_003401089.1| - 0.027 13.8 7.1 0.12 11.7 0.8 3.3 3 1 1 4 4 4 0 Rotavirus non structural protein DUF1664 PF07889.7 gi|284162466|ref|YP_003401089.1| - 0.027 14.2 24.1 0.51 10.1 0.2 4.7 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Myosin_tail_1 PF01576.14 gi|284162466|ref|YP_003401089.1| - 0.03 12.0 36.4 0.011 13.4 8.9 2.8 1 1 1 2 2 2 0 Myosin tail Laminin_II PF06009.7 gi|284162466|ref|YP_003401089.1| - 0.031 14.0 39.7 1.3 8.7 1.7 5.2 3 2 2 5 5 5 0 Laminin Domain II Laminin_I PF06008.9 gi|284162466|ref|YP_003401089.1| - 0.049 12.9 32.9 0.027 13.8 5.1 4.2 2 1 2 4 4 4 0 Laminin Domain I Mod_r PF07200.8 gi|284162466|ref|YP_003401089.1| - 0.12 12.2 19.9 0.046 13.6 0.8 4.1 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein LOH1CR12 PF10158.4 gi|284162466|ref|YP_003401089.1| - 0.23 11.2 21.6 1.9 8.2 2.4 5.4 1 1 6 7 7 7 0 Tumour suppressor protein Cytochrom_B562 PF07361.6 gi|284162466|ref|YP_003401089.1| - 0.3 11.4 0.0 0.3 11.4 0.0 5.5 2 1 4 6 6 6 0 Cytochrome b562 DUF4611 PF15387.1 gi|284162466|ref|YP_003401089.1| - 0.42 10.7 9.4 0.23 11.6 0.6 4.3 3 2 1 4 4 3 0 Domain of unknown function (DUF4611) APG17 PF04108.7 gi|284162466|ref|YP_003401089.1| - 0.65 8.7 27.3 0.7 8.6 2.7 4.6 1 1 2 5 5 5 0 Autophagy protein Apg17 ING PF12998.2 gi|284162466|ref|YP_003401089.1| - 0.87 9.8 24.2 0.15 12.3 3.1 4.2 3 2 1 4 4 3 0 Inhibitor of growth proteins N-terminal histone-binding DUF2935 PF11155.3 gi|284162466|ref|YP_003401089.1| - 0.97 9.5 12.1 7.8e+03 -3.1 8.4 4.9 1 1 0 1 1 0 0 Domain of unknown function (DUF2935) ISG65-75 PF11727.3 gi|284162466|ref|YP_003401089.1| - 1.2 8.1 37.4 0.36 9.8 4.8 3.7 1 1 1 3 3 3 0 Invariant surface glycoprotein HisKA_3 PF07730.8 gi|284162466|ref|YP_003401089.1| - 1.3 9.4 19.7 12 6.3 0.5 6.8 4 4 2 6 6 6 0 Histidine kinase DASH_Dad4 PF08650.5 gi|284162466|ref|YP_003401089.1| - 1.3 8.9 12.4 8.4 6.3 0.7 5.0 5 1 0 6 6 5 0 DASH complex subunit Dad4 Phasin_2 PF09361.5 gi|284162466|ref|YP_003401089.1| - 2.1 8.4 32.1 0.48 10.4 8.8 4.0 2 2 1 3 3 3 0 Phasin protein Lipoprotein_7 PF01540.11 gi|284162466|ref|YP_003401089.1| - 2.3 7.2 35.1 7.1 5.5 6.3 4.3 1 1 2 3 3 3 0 Adhesin lipoprotein Spectrin PF00435.16 gi|284162466|ref|YP_003401089.1| - 2.7 8.3 19.8 8.2 6.7 0.0 4.6 2 1 1 4 4 4 0 Spectrin repeat FUSC PF04632.7 gi|284162466|ref|YP_003401089.1| - 3.5 5.9 16.0 6.5 5.0 3.5 2.2 1 1 1 2 2 2 0 Fusaric acid resistance protein family DUF2400 PF09674.5 gi|284162466|ref|YP_003401089.1| - 3.6 7.2 10.8 2.2 7.9 0.1 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2400) CDC37_N PF03234.9 gi|284162466|ref|YP_003401089.1| - 4.6 7.5 24.6 0.97 9.7 4.2 2.7 2 1 0 2 2 2 0 Cdc37 N terminal kinase binding DUF4041 PF13250.1 gi|284162466|ref|YP_003401089.1| - 7.2 6.2 11.1 0.71 9.4 0.2 4.5 5 0 0 5 5 5 0 Domain of unknown function (DUF4041) Reo_sigmaC PF04582.7 gi|284162466|ref|YP_003401089.1| - 8.2 5.5 19.7 2.1 7.4 4.5 2.5 2 1 0 2 2 2 0 Reovirus sigma C capsid protein HisKA PF00512.20 gi|284162466|ref|YP_003401089.1| - 8.2 6.5 20.8 10 6.1 0.3 6.2 2 1 4 6 6 5 0 His Kinase A (phospho-acceptor) domain DUF2422 PF10337.4 gi|284162466|ref|YP_003401089.1| - 9.5 4.8 16.5 4.2e+02 -0.6 11.4 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2422) HTH_45 PF14947.1 gi|284162467|ref|YP_003401090.1| - 1.2e-13 50.6 0.1 1.5e-13 50.3 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|284162467|ref|YP_003401090.1| - 3.2e-07 29.8 0.3 4.9e-07 29.3 0.1 1.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|284162467|ref|YP_003401090.1| - 0.00013 21.7 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284162467|ref|YP_003401090.1| - 0.0012 18.2 0.0 0.0017 17.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284162467|ref|YP_003401090.1| - 0.003 17.0 0.0 0.0059 16.1 0.0 1.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|284162467|ref|YP_003401090.1| - 0.0088 15.7 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|284162467|ref|YP_003401090.1| - 0.094 12.7 0.0 0.23 11.4 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain CcdA PF07362.7 gi|284162468|ref|YP_003401091.1| - 0.01 15.6 0.3 0.013 15.3 0.2 1.2 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA Imm42 PF15601.1 gi|284162468|ref|YP_003401091.1| - 0.09 12.2 0.1 0.092 12.1 0.0 1.1 1 0 0 1 1 1 0 Immunity protein 42 DUF3545 PF12065.3 gi|284162468|ref|YP_003401091.1| - 1.8 8.3 7.4 3.7 7.3 4.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3545) Arg_tRNA_synt_N PF03485.11 gi|284162469|ref|YP_003401092.1| - 0.00049 20.5 0.0 0.00081 19.8 0.0 1.4 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain DUF2373 PF10180.4 gi|284162469|ref|YP_003401092.1| - 0.0068 15.9 0.1 0.02 14.4 0.0 1.8 2 0 0 2 2 2 1 Uncharacterised conserved protein (DUF2373) Ribosomal_S7 PF00177.16 gi|284162469|ref|YP_003401092.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S7p/S5e FOP_dimer PF09398.5 gi|284162469|ref|YP_003401092.1| - 0.13 12.2 0.4 1.3 9.0 0.3 2.2 1 1 1 2 2 2 0 FOP N terminal dimerisation domain CheR PF01739.13 gi|284162470|ref|YP_003401093.1| - 4.4e-66 221.9 0.1 5.6e-66 221.5 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|284162470|ref|YP_003401093.1| - 2.2e-10 39.7 2.8 4.1e-10 38.8 2.0 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|284162470|ref|YP_003401093.1| - 3.4e-07 30.6 0.0 7.8e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|284162470|ref|YP_003401093.1| - 3.5e-06 27.5 0.0 1.3e-05 25.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284162470|ref|YP_003401093.1| - 9.5e-05 22.7 0.3 0.00039 20.7 0.1 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|284162470|ref|YP_003401093.1| - 0.0001 22.6 0.1 0.0024 18.3 0.0 2.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|284162470|ref|YP_003401093.1| - 0.00047 19.8 0.2 0.00073 19.2 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284162470|ref|YP_003401093.1| - 0.0014 18.2 0.1 0.029 13.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|284162470|ref|YP_003401093.1| - 0.025 13.7 0.0 0.039 13.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_26 PF13659.1 gi|284162470|ref|YP_003401093.1| - 0.13 12.3 0.0 0.33 10.9 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain OST-HTH PF12872.2 gi|284162470|ref|YP_003401093.1| - 0.21 11.4 1.2 2.3 8.1 0.2 2.3 2 0 0 2 2 2 0 OST-HTH/LOTUS domain CheD PF03975.8 gi|284162471|ref|YP_003401094.1| - 5.6e-32 109.8 0.3 8.4e-32 109.3 0.2 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|284162472|ref|YP_003401095.1| - 1.7e-28 98.0 4.2 8.7e-14 50.9 0.0 2.6 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|284162472|ref|YP_003401095.1| - 6.3e-09 35.5 0.4 0.00031 20.5 0.1 2.3 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX HATPase_c PF02518.21 gi|284162473|ref|YP_003401096.1| - 6.3e-25 87.0 1.3 1.6e-24 85.7 0.3 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.14 gi|284162473|ref|YP_003401096.1| - 2.8e-24 85.1 2.1 4.9e-24 84.3 0.2 2.4 2 0 0 2 2 2 1 CheW-like domain Hpt PF01627.18 gi|284162473|ref|YP_003401096.1| - 1.8e-20 72.7 0.0 5.6e-20 71.1 0.0 1.9 1 0 0 1 1 1 1 Hpt domain P2 PF07194.6 gi|284162473|ref|YP_003401096.1| - 3.2e-20 71.7 0.6 3.2e-20 71.7 0.4 2.6 2 0 0 2 2 2 1 P2 response regulator binding domain H-kinase_dim PF02895.9 gi|284162473|ref|YP_003401096.1| - 2.2e-17 63.1 2.3 8.1e-17 61.3 0.7 2.6 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.1 gi|284162473|ref|YP_003401096.1| - 1e-05 25.2 2.2 0.00039 20.0 1.5 2.6 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|284162473|ref|YP_003401096.1| - 0.0041 16.9 0.0 0.0099 15.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|284162473|ref|YP_003401096.1| - 0.0099 15.5 2.0 0.055 13.1 1.4 2.2 1 1 0 1 1 1 1 GHKL domain CheB_methylest PF01339.12 gi|284162474|ref|YP_003401097.1| - 2.7e-70 235.5 0.2 5.1e-70 234.6 0.2 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|284162474|ref|YP_003401097.1| - 1.1e-24 86.5 0.8 3.7e-24 84.8 0.2 2.1 2 1 0 2 2 2 1 Response regulator receiver domain Peripla_BP_2 PF01497.13 gi|284162474|ref|YP_003401097.1| - 0.0043 16.2 0.1 0.0084 15.2 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein Response_reg PF00072.19 gi|284162475|ref|YP_003401098.1| - 5.8e-33 113.2 0.5 6.4e-33 113.1 0.4 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|284162475|ref|YP_003401098.1| - 0.019 14.8 0.1 0.041 13.7 0.0 1.6 1 1 0 1 1 1 0 B12 binding domain DUF2179 PF10035.4 gi|284162475|ref|YP_003401098.1| - 0.069 12.7 0.4 0.23 11.0 0.0 2.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2179) RuvA_C PF07499.8 gi|284162475|ref|YP_003401098.1| - 0.37 10.9 1.6 3.1 8.0 0.3 2.4 2 0 0 2 2 2 0 RuvA, C-terminal domain CheF-arch PF04283.7 gi|284162476|ref|YP_003401099.1| - 1.4e-48 165.0 0.6 2e-48 164.5 0.4 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea HTH_45 PF14947.1 gi|284162476|ref|YP_003401099.1| - 0.0051 16.6 0.2 0.079 12.7 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix APC2 PF08672.6 gi|284162476|ref|YP_003401099.1| - 0.007 16.5 0.1 1.8 8.8 0.0 2.4 2 0 0 2 2 2 1 Anaphase promoting complex (APC) subunit 2 MerR_2 PF13591.1 gi|284162476|ref|YP_003401099.1| - 0.027 14.0 0.1 0.12 11.9 0.0 2.1 2 1 0 2 2 2 0 MerR HTH family regulatory protein Rtt106 PF08512.7 gi|284162476|ref|YP_003401099.1| - 0.046 13.7 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Histone chaperone Rttp106-like GerE PF00196.14 gi|284162476|ref|YP_003401099.1| - 0.12 11.7 0.4 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family CheW PF01584.14 gi|284162477|ref|YP_003401100.1| - 6.5e-41 139.0 0.7 7.3e-41 138.8 0.5 1.0 1 0 0 1 1 1 1 CheW-like domain Antimicrobial_3 PF08025.6 gi|284162477|ref|YP_003401100.1| - 0.069 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Spider antimicrobial peptide MCPsignal PF00015.16 gi|284162478|ref|YP_003401101.1| - 3.8e-50 170.3 51.6 5.4e-47 160.0 22.4 3.9 2 2 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|284162478|ref|YP_003401101.1| - 5.3e-47 158.4 7.0 1.3e-15 57.6 0.0 5.8 5 1 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|284162478|ref|YP_003401101.1| - 5.5e-42 142.2 0.0 7.3e-14 51.7 0.0 5.2 5 1 0 5 5 4 4 PAS fold PAS PF00989.19 gi|284162478|ref|YP_003401101.1| - 7.2e-38 128.8 0.0 9.8e-13 47.8 0.0 5.0 4 1 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|284162478|ref|YP_003401101.1| - 3.4e-28 96.5 0.0 3.7e-06 26.6 0.0 5.5 5 0 0 5 5 4 4 PAS domain PAS_10 PF13596.1 gi|284162478|ref|YP_003401101.1| - 2.9e-20 72.5 5.5 1.8e-06 28.1 0.0 5.9 5 1 1 6 6 6 3 PAS domain PAS_7 PF12860.2 gi|284162478|ref|YP_003401101.1| - 8.1e-09 35.5 13.8 0.045 13.7 0.0 7.0 6 4 1 7 7 6 3 PAS fold H_kinase_N PF12282.3 gi|284162478|ref|YP_003401101.1| - 1.8e-06 27.5 0.4 0.00027 20.5 0.0 2.7 2 0 0 2 2 2 1 Signal transduction histidine kinase Seryl_tRNA_N PF02403.17 gi|284162478|ref|YP_003401101.1| - 0.0046 16.9 0.6 0.0046 16.9 0.4 6.6 5 2 2 7 7 7 1 Seryl-tRNA synthetase N-terminal domain ApoC-I PF04691.7 gi|284162478|ref|YP_003401101.1| - 0.013 15.1 7.4 0.019 14.6 0.0 4.4 4 1 0 4 4 4 0 Apolipoprotein C-I (ApoC-1) DUF3407 PF11887.3 gi|284162478|ref|YP_003401101.1| - 0.033 13.4 4.6 0.56 9.4 0.5 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3407) GAF_2 PF13185.1 gi|284162478|ref|YP_003401101.1| - 0.038 14.4 0.0 0.18 12.2 0.0 2.2 1 0 0 1 1 1 0 GAF domain Sec8_exocyst PF04048.9 gi|284162478|ref|YP_003401101.1| - 0.061 12.9 20.7 0.042 13.4 0.5 4.4 4 2 0 4 4 4 0 Sec8 exocyst complex component specific domain Laminin_II PF06009.7 gi|284162478|ref|YP_003401101.1| - 0.088 12.5 44.6 0.042 13.6 5.5 6.4 5 2 2 7 7 7 0 Laminin Domain II PAS_3 PF08447.6 gi|284162478|ref|YP_003401101.1| - 0.12 12.5 0.0 12 6.0 0.0 3.2 3 0 0 3 3 2 0 PAS fold GAF PF01590.21 gi|284162478|ref|YP_003401101.1| - 0.12 12.4 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 GAF domain DUF948 PF06103.6 gi|284162478|ref|YP_003401101.1| - 0.13 12.1 32.2 0.6 10.0 2.7 6.9 8 1 1 9 9 7 0 Bacterial protein of unknown function (DUF948) APG17 PF04108.7 gi|284162478|ref|YP_003401101.1| - 0.89 8.2 23.9 0.75 8.5 13.1 3.2 2 1 0 2 2 2 0 Autophagy protein Apg17 IncA PF04156.9 gi|284162478|ref|YP_003401101.1| - 2.7 7.5 32.6 0.074 12.6 0.8 4.6 4 1 0 4 4 4 0 IncA protein Allexi_40kDa PF05549.6 gi|284162478|ref|YP_003401101.1| - 3 7.0 13.9 4.2 6.5 3.1 3.5 3 0 0 3 3 3 0 Allexivirus 40kDa protein DASH_Dam1 PF08653.5 gi|284162478|ref|YP_003401101.1| - 4.5 7.1 4.9 6 6.7 0.1 3.8 4 0 0 4 4 2 0 DASH complex subunit Dam1 ING PF12998.2 gi|284162478|ref|YP_003401101.1| - 6.3 7.1 21.8 0.92 9.8 2.7 5.0 4 1 1 5 5 4 0 Inhibitor of growth proteins N-terminal histone-binding COG2 PF06148.6 gi|284162478|ref|YP_003401101.1| - 7.7 6.3 27.8 2 8.3 0.1 6.5 6 2 1 7 7 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Spc7 PF08317.6 gi|284162478|ref|YP_003401101.1| - 8.4 4.9 36.4 0.49 8.9 0.2 4.3 4 1 1 5 5 5 0 Spc7 kinetochore protein Leuk-A4-hydro_C PF09127.6 gi|284162479|ref|YP_003401102.1| - 0.08 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Leukotriene A4 hydrolase, C-terminal DUF1212 PF06738.7 gi|284162480|ref|YP_003401103.1| - 0.066 12.6 0.5 0.064 12.7 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) Vma12 PF11712.3 gi|284162480|ref|YP_003401103.1| - 0.18 11.5 1.8 0.21 11.3 1.2 1.0 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF1380 PF07128.7 gi|284162481|ref|YP_003401104.1| - 0.16 11.7 1.3 0.2 11.4 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1380) Pex14_N PF04695.8 gi|284162481|ref|YP_003401104.1| - 0.19 11.7 1.0 0.31 11.0 0.7 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region CCAP PF11105.3 gi|284162481|ref|YP_003401104.1| - 0.41 10.3 6.4 0.041 13.6 0.7 2.0 1 1 1 2 2 2 0 Arthropod cardioacceleratory peptide 2a Mit_KHE1 PF10173.4 gi|284162481|ref|YP_003401104.1| - 2.3 8.0 6.7 2.8 7.7 4.6 1.4 1 1 0 1 1 1 0 Mitochondrial K+-H+ exchange-related DUF4352 PF11611.3 gi|284162482|ref|YP_003401105.1| - 1e-17 64.3 2.4 1.5e-17 63.8 1.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) DUF4354 PF14263.1 gi|284162482|ref|YP_003401105.1| - 0.0054 16.4 0.2 0.012 15.2 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4354) DUF4179 PF13786.1 gi|284162482|ref|YP_003401105.1| - 0.026 14.7 0.7 0.061 13.5 0.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) Lipoprotein_19 PF13617.1 gi|284162482|ref|YP_003401105.1| - 0.038 13.6 0.5 5.9 6.6 0.1 2.3 2 0 0 2 2 2 0 YnbE-like lipoprotein BsuPI PF12690.2 gi|284162482|ref|YP_003401105.1| - 0.053 13.2 0.0 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 Intracellular proteinase inhibitor T2SF PF00482.18 gi|284162483|ref|YP_003401106.1| - 6.3e-21 74.5 10.8 3e-13 49.7 0.0 3.7 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Claudin_2 PF13903.1 gi|284162483|ref|YP_003401106.1| - 0.78 9.4 8.4 5.6 6.6 1.0 3.5 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction T2SE PF00437.15 gi|284162484|ref|YP_003401107.1| - 3.5e-44 150.7 0.0 5.9e-44 149.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|284162484|ref|YP_003401107.1| - 0.0002 20.7 0.0 0.00056 19.3 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|284162484|ref|YP_003401107.1| - 0.0004 20.6 0.0 0.001 19.3 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_17 PF13207.1 gi|284162484|ref|YP_003401107.1| - 0.021 15.6 0.4 3.7 8.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|284162484|ref|YP_003401107.1| - 0.028 14.3 0.0 0.1 12.5 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|284162484|ref|YP_003401107.1| - 0.032 14.5 1.2 0.032 14.5 0.8 2.5 3 1 0 3 3 3 0 AAA domain AAA_22 PF13401.1 gi|284162484|ref|YP_003401107.1| - 0.043 13.9 0.0 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|284162484|ref|YP_003401107.1| - 0.13 11.6 0.0 0.59 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain KaiC PF06745.8 gi|284162485|ref|YP_003401108.1| - 2.2e-31 108.7 0.0 2.7e-31 108.4 0.0 1.1 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|284162485|ref|YP_003401108.1| - 2.4e-12 46.3 2.5 2.3e-09 36.5 0.1 2.1 1 1 0 2 2 2 2 PAXNEB protein AAA_25 PF13481.1 gi|284162485|ref|YP_003401108.1| - 3.7e-08 33.0 0.0 8.1e-08 31.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|284162485|ref|YP_003401108.1| - 2.7e-07 29.7 0.3 2.2e-06 26.7 0.2 2.1 1 1 0 1 1 1 1 Rad51 DUF835 PF05763.7 gi|284162485|ref|YP_003401108.1| - 6.9e-07 28.8 0.1 1.3e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_22 PF13401.1 gi|284162485|ref|YP_003401108.1| - 1.5e-05 25.1 0.1 2.7e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|284162485|ref|YP_003401108.1| - 0.00039 19.5 0.2 0.0019 17.3 0.1 1.8 1 1 0 1 1 1 1 recA bacterial DNA recombination protein AAA_14 PF13173.1 gi|284162485|ref|YP_003401108.1| - 0.0075 16.1 0.6 0.14 12.0 0.4 2.5 1 1 1 2 2 2 1 AAA domain Elong_Iki1 PF10483.4 gi|284162485|ref|YP_003401108.1| - 0.024 14.0 0.1 0.035 13.4 0.1 1.2 1 0 0 1 1 1 0 Elongator subunit Iki1 IstB_IS21 PF01695.12 gi|284162485|ref|YP_003401108.1| - 0.11 11.8 0.4 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Arch_flagellin PF01917.11 gi|284162486|ref|YP_003401109.1| - 0.0098 15.5 5.1 0.033 13.7 3.5 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin PsbQ PF05757.6 gi|284162486|ref|YP_003401109.1| - 0.029 13.7 0.1 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) Arch_flagellin PF01917.11 gi|284162487|ref|YP_003401110.1| - 1.8e-05 24.4 4.6 0.00017 21.3 3.2 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin Uds1 PF15456.1 gi|284162488|ref|YP_003401111.1| - 0.0038 17.2 2.1 0.0056 16.6 1.4 1.3 1 0 0 1 1 1 1 Up-regulated During Septation TPR_MLP1_2 PF07926.7 gi|284162488|ref|YP_003401111.1| - 0.0089 15.7 3.8 0.022 14.5 2.6 1.6 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein FlaC_arch PF05377.6 gi|284162488|ref|YP_003401111.1| - 0.014 15.2 0.3 0.014 15.2 0.2 3.9 3 1 0 3 3 2 0 Flagella accessory protein C (FlaC) DUF913 PF06025.7 gi|284162488|ref|YP_003401111.1| - 0.034 12.8 3.0 2 7.0 1.1 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF913) Arch_fla_DE PF04659.8 gi|284162488|ref|YP_003401111.1| - 0.034 13.9 0.1 0.096 12.5 0.0 1.8 1 0 0 1 1 1 0 Archaeal flagella protein Baculo_PEP_C PF04513.7 gi|284162488|ref|YP_003401111.1| - 0.036 13.8 0.4 0.23 11.2 0.2 2.0 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Exonuc_VII_L PF02601.10 gi|284162488|ref|YP_003401111.1| - 0.041 13.0 0.9 0.049 12.8 0.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit COG5 PF10392.4 gi|284162488|ref|YP_003401111.1| - 0.095 12.6 0.1 0.22 11.4 0.1 1.6 1 0 0 1 1 1 0 Golgi transport complex subunit 5 DUF948 PF06103.6 gi|284162488|ref|YP_003401111.1| - 0.1 12.4 0.4 0.1 12.4 0.3 2.4 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1631 PF07793.6 gi|284162488|ref|YP_003401111.1| - 0.11 10.5 4.6 0.14 10.2 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1631) GrpE PF01025.14 gi|284162488|ref|YP_003401111.1| - 0.17 11.4 11.1 0.9 9.0 0.3 2.5 2 0 0 2 2 2 0 GrpE GP41 PF00517.12 gi|284162488|ref|YP_003401111.1| - 0.17 11.4 0.1 0.17 11.4 0.1 1.7 2 0 0 2 2 2 0 Retroviral envelope protein TT_ORF2 PF02957.10 gi|284162488|ref|YP_003401111.1| - 0.68 10.6 4.6 0.18 12.5 0.7 1.7 2 0 0 2 2 2 0 TT viral ORF2 Med30 PF11315.3 gi|284162488|ref|YP_003401111.1| - 0.89 9.6 6.8 2 8.5 4.7 1.8 1 1 0 1 1 1 0 Mediator complex subunit 30 DUF740 PF05340.7 gi|284162488|ref|YP_003401111.1| - 1.5 7.1 6.8 1.8 6.8 4.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF740) Laminin_I PF06008.9 gi|284162488|ref|YP_003401111.1| - 2.6 7.2 7.8 0.25 10.6 0.2 2.2 2 0 0 2 2 2 0 Laminin Domain I Usp PF00582.21 gi|284162488|ref|YP_003401111.1| - 2.8 8.1 7.5 4.6 7.4 3.5 2.3 3 0 0 3 3 3 0 Universal stress protein family DUF3306 PF11748.3 gi|284162488|ref|YP_003401111.1| - 3.5 8.3 9.2 0.79 10.3 4.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3306) Spc7 PF08317.6 gi|284162488|ref|YP_003401111.1| - 4.9 5.7 12.9 13 4.3 8.9 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|284162488|ref|YP_003401111.1| - 8.8 6.3 16.2 2.5 8.1 0.8 2.7 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Arch_flagellin PF01917.11 gi|284162489|ref|YP_003401112.1| - 1.1e-32 113.1 0.2 1.3e-32 112.9 0.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin PMP22_Claudin PF00822.15 gi|284162489|ref|YP_003401112.1| - 0.14 11.8 1.5 0.2 11.2 1.0 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family Arch_flagellin PF01917.11 gi|284162490|ref|YP_003401113.1| - 5.2e-31 107.7 0.3 6.4e-31 107.4 0.2 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2427 PF10348.4 gi|284162491|ref|YP_003401114.1| - 0.087 12.4 3.8 0.09 12.3 1.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF2427) IBP39 PF11422.3 gi|284162491|ref|YP_003401114.1| - 0.14 11.6 0.1 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Initiator binding protein 39 kDa ATP_bind_3 PF01171.15 gi|284162492|ref|YP_003401115.1| - 1.3e-13 50.8 0.0 4.9e-13 48.9 0.0 1.9 2 1 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.11 gi|284162492|ref|YP_003401115.1| - 3.1e-07 29.2 0.0 4.2e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|284162492|ref|YP_003401115.1| - 1.3e-05 24.8 0.0 2.7e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 Asparagine synthase PAPS_reduct PF01507.14 gi|284162492|ref|YP_003401115.1| - 0.0015 18.3 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|284162492|ref|YP_003401115.1| - 0.01 15.1 0.1 0.042 13.1 0.0 2.1 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC MafB19-deam PF14437.1 gi|284162492|ref|YP_003401115.1| - 0.15 11.6 0.1 0.47 10.0 0.0 1.8 1 1 0 1 1 1 0 MafB19-like deaminase RecR PF02132.10 gi|284162492|ref|YP_003401115.1| - 0.34 10.3 5.0 1.2 8.6 1.9 2.7 2 0 0 2 2 2 0 RecR protein DUF521 PF04412.8 gi|284162494|ref|YP_003401117.1| - 2.6e-130 434.5 0.0 3.7e-130 434.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CxxCxxCC PF03692.10 gi|284162496|ref|YP_003401119.1| - 4.4e-11 43.1 1.5 6.1e-11 42.6 1.1 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|284162496|ref|YP_003401119.1| - 0.018 14.5 0.8 0.028 13.9 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3109) DNase-RNase PF02577.9 gi|284162497|ref|YP_003401120.1| - 7.9e-47 157.8 0.1 9e-47 157.7 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease DUF39 PF01837.11 gi|284162498|ref|YP_003401121.1| - 1.5e-151 503.8 0.0 1.9e-151 503.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|284162498|ref|YP_003401121.1| - 8.8e-38 127.8 4.2 1.7e-19 69.3 0.3 2.7 2 0 0 2 2 2 2 CBS domain Fer4 PF00037.22 gi|284162499|ref|YP_003401122.1| - 5.5e-14 51.0 12.5 1.4e-07 30.7 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284162499|ref|YP_003401122.1| - 5.1e-13 48.2 12.2 2.1e-06 27.3 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|284162499|ref|YP_003401122.1| - 1.2e-12 46.9 13.6 2.7e-06 26.9 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284162499|ref|YP_003401122.1| - 3e-12 46.7 10.1 5.8e-12 45.8 7.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162499|ref|YP_003401122.1| - 9.5e-10 38.1 10.2 2.1e-09 37.0 7.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284162499|ref|YP_003401122.1| - 1.1e-09 38.4 9.3 2e-09 37.5 6.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284162499|ref|YP_003401122.1| - 1.3e-08 34.6 3.4 0.00015 21.6 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain NIL PF09383.5 gi|284162499|ref|YP_003401122.1| - 1.6e-08 33.9 0.3 2e-08 33.6 0.2 1.1 1 0 0 1 1 1 1 NIL domain Fer4_4 PF12800.2 gi|284162499|ref|YP_003401122.1| - 2.3e-08 33.6 13.7 5.7e-05 23.1 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284162499|ref|YP_003401122.1| - 4.7e-07 30.0 5.8 0.0016 18.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284162499|ref|YP_003401122.1| - 8.3e-07 28.7 12.0 0.004 16.9 2.0 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284162499|ref|YP_003401122.1| - 4e-06 27.4 8.7 0.0034 18.1 0.4 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|284162499|ref|YP_003401122.1| - 8.6e-06 26.0 9.2 0.00031 21.0 0.5 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|284162499|ref|YP_003401122.1| - 1.7e-05 25.1 12.6 0.0004 20.7 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284162499|ref|YP_003401122.1| - 5.8e-05 23.5 12.4 0.0021 18.6 0.7 2.8 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|284162499|ref|YP_003401122.1| - 5.9e-05 23.3 17.9 0.0097 16.4 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|284162499|ref|YP_003401122.1| - 0.012 15.4 8.9 0.066 13.1 6.2 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain zf-ribbon_3 PF13248.1 gi|284162499|ref|YP_003401122.1| - 0.16 11.1 4.0 1.3 8.3 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Fer4_19 PF06902.6 gi|284162499|ref|YP_003401122.1| - 0.23 11.3 12.8 0.11 12.3 0.9 2.7 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster EamA PF00892.15 gi|284162500|ref|YP_003401123.1| - 1.6e-29 102.4 39.9 2.4e-22 79.3 9.1 2.2 2 0 0 2 2 2 2 EamA-like transporter family Rad51 PF08423.6 gi|284162501|ref|YP_003401124.1| - 9.9e-91 303.1 0.8 5.5e-75 251.5 0.0 2.3 2 0 0 2 2 2 2 Rad51 LAGLIDADG_3 PF14528.1 gi|284162501|ref|YP_003401124.1| - 1.5e-11 44.3 1.2 6.7e-08 32.6 0.1 2.7 2 0 0 2 2 2 2 LAGLIDADG-like domain HHH_5 PF14520.1 gi|284162501|ref|YP_003401124.1| - 1.2e-09 38.2 4.4 1.9e-09 37.5 1.4 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix domain Intein_splicing PF14890.1 gi|284162501|ref|YP_003401124.1| - 3.6e-07 29.4 0.0 2.7e-06 26.4 0.0 2.3 2 1 0 2 2 2 1 Intein splicing domain Hom_end PF05204.9 gi|284162501|ref|YP_003401124.1| - 4.6e-07 29.7 0.4 0.00015 21.6 0.0 3.5 3 1 1 4 4 4 1 Homing endonuclease HHH PF00633.18 gi|284162501|ref|YP_003401124.1| - 9.6e-06 25.0 2.1 0.064 12.9 0.1 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|284162501|ref|YP_003401124.1| - 7.9e-05 22.4 0.1 0.00027 20.7 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|284162501|ref|YP_003401124.1| - 0.00011 22.0 0.0 0.00041 20.2 0.0 2.0 2 0 0 2 2 2 1 Pathogenicity locus LAGLIDADG_WhiA PF14527.1 gi|284162501|ref|YP_003401124.1| - 0.00025 20.8 0.1 1.4 8.7 0.0 3.7 3 0 0 3 3 3 2 WhiA LAGLIDADG-like domain KaiC PF06745.8 gi|284162501|ref|YP_003401124.1| - 0.00037 19.6 0.2 0.78 8.8 0.0 2.5 2 0 0 2 2 2 2 KaiC RecA PF00154.16 gi|284162501|ref|YP_003401124.1| - 0.00092 18.3 1.6 0.16 10.9 0.0 2.5 3 0 0 3 3 3 2 recA bacterial DNA recombination protein CPSase_L_D3 PF02787.14 gi|284162501|ref|YP_003401124.1| - 0.0012 18.5 0.1 0.0034 17.1 0.1 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HHH_8 PF14716.1 gi|284162501|ref|YP_003401124.1| - 0.016 15.3 0.3 0.82 9.8 0.0 2.9 3 0 0 3 3 2 0 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|284162501|ref|YP_003401124.1| - 0.018 15.0 0.0 0.069 13.2 0.0 2.1 1 0 0 1 1 1 0 IMS family HHH motif AAA PF00004.24 gi|284162502|ref|YP_003401125.1| - 3.5e-39 134.0 0.1 8.5e-39 132.7 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|284162502|ref|YP_003401125.1| - 1e-08 35.9 1.9 5e-08 33.7 0.1 2.9 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|284162502|ref|YP_003401125.1| - 2.2e-07 30.6 0.0 1.4e-06 28.1 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|284162502|ref|YP_003401125.1| - 5.1e-06 26.8 0.1 1.8e-05 25.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284162502|ref|YP_003401125.1| - 1.2e-05 25.2 0.0 3.3e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|284162502|ref|YP_003401125.1| - 3.3e-05 23.9 0.0 7.5e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|284162502|ref|YP_003401125.1| - 6e-05 23.2 0.4 0.0062 16.6 0.3 2.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284162502|ref|YP_003401125.1| - 0.00018 21.5 0.5 0.015 15.2 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_2 PF07724.9 gi|284162502|ref|YP_003401125.1| - 0.00045 20.1 0.2 0.0089 15.9 0.0 2.7 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|284162502|ref|YP_003401125.1| - 0.00062 18.8 0.0 0.0014 17.6 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|284162502|ref|YP_003401125.1| - 0.0016 18.3 0.0 0.0058 16.5 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|284162502|ref|YP_003401125.1| - 0.0031 17.2 0.4 0.01 15.5 0.3 1.9 1 0 0 1 1 1 1 Part of AAA domain Cytidylate_kin2 PF13189.1 gi|284162502|ref|YP_003401125.1| - 0.0035 17.2 0.1 0.016 15.0 0.0 2.1 2 0 0 2 2 2 1 Cytidylate kinase-like family MMR_HSR1 PF01926.18 gi|284162502|ref|YP_003401125.1| - 0.0037 17.2 0.0 0.01 15.7 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase NACHT PF05729.7 gi|284162502|ref|YP_003401125.1| - 0.0041 16.7 0.1 3 7.4 0.0 2.3 1 1 1 2 2 2 2 NACHT domain AAA_11 PF13086.1 gi|284162502|ref|YP_003401125.1| - 0.0045 16.6 0.1 0.027 14.0 0.0 2.2 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|284162502|ref|YP_003401125.1| - 0.0071 15.5 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|284162502|ref|YP_003401125.1| - 0.016 14.6 0.0 0.043 13.2 0.0 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein TIP49 PF06068.8 gi|284162502|ref|YP_003401125.1| - 0.016 13.9 0.1 0.04 12.6 0.0 1.7 1 1 0 1 1 1 0 TIP49 C-terminus Rad17 PF03215.10 gi|284162502|ref|YP_003401125.1| - 0.016 13.8 0.0 0.026 13.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SKI PF01202.17 gi|284162502|ref|YP_003401125.1| - 0.017 14.9 0.0 0.043 13.6 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase ABC_tran PF00005.22 gi|284162502|ref|YP_003401125.1| - 0.024 14.9 0.0 0.064 13.5 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_6 PF12774.2 gi|284162502|ref|YP_003401125.1| - 0.026 14.0 0.0 0.044 13.3 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region D1 AAA_24 PF13479.1 gi|284162502|ref|YP_003401125.1| - 0.032 13.8 0.4 0.074 12.6 0.3 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|284162502|ref|YP_003401125.1| - 0.039 14.1 0.1 0.1 12.8 0.0 1.9 2 1 0 2 2 1 0 RNA helicase ADK PF00406.17 gi|284162502|ref|YP_003401125.1| - 0.039 13.8 0.8 1.7 8.5 0.1 2.7 2 1 0 2 2 2 0 Adenylate kinase ResIII PF04851.10 gi|284162502|ref|YP_003401125.1| - 0.044 13.6 0.0 0.086 12.6 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|284162502|ref|YP_003401125.1| - 0.059 12.7 0.2 0.2 11.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain DUF3847 PF12958.2 gi|284162502|ref|YP_003401125.1| - 0.075 12.8 4.8 0.23 11.2 0.6 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3847) FtsK_SpoIIIE PF01580.13 gi|284162502|ref|YP_003401125.1| - 0.09 12.2 0.0 5.9 6.3 0.0 2.5 1 1 1 2 2 2 0 FtsK/SpoIIIE family CARDB PF07705.6 gi|284162503|ref|YP_003401126.1| - 0.00089 19.2 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 CARDB DUF4352 PF11611.3 gi|284162503|ref|YP_003401126.1| - 0.01 15.9 0.3 0.061 13.4 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4352) Y_Y_Y PF07495.8 gi|284162503|ref|YP_003401126.1| - 0.025 14.3 0.4 1.1 9.0 0.0 2.8 2 0 0 2 2 2 0 Y_Y_Y domain PKD PF00801.15 gi|284162503|ref|YP_003401126.1| - 0.033 13.9 0.9 0.15 11.8 0.0 2.2 2 0 0 2 2 2 0 PKD domain DIE2_ALG10 PF04922.7 gi|284162504|ref|YP_003401127.1| - 0.012 14.6 1.1 0.013 14.5 0.8 1.0 1 0 0 1 1 1 0 DIE2/ALG10 family DUF2842 PF11003.3 gi|284162504|ref|YP_003401127.1| - 0.19 11.5 5.9 0.27 11.1 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2842) DUF2207 PF09972.4 gi|284162504|ref|YP_003401127.1| - 0.29 9.6 7.3 0.3 9.6 5.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) YrvL PF14184.1 gi|284162504|ref|YP_003401127.1| - 0.4 10.4 6.7 0.45 10.3 4.6 1.1 1 0 0 1 1 1 0 Regulatory protein YrvL PIG-Y PF15159.1 gi|284162504|ref|YP_003401127.1| - 1 9.5 4.6 1.3 9.3 3.2 1.1 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y DUF4149 PF13664.1 gi|284162504|ref|YP_003401127.1| - 1.1 9.3 5.9 1.2 9.2 4.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) MR_MLE_C PF13378.1 gi|284162505|ref|YP_003401128.1| - 2.8e-21 75.5 0.0 5.8e-21 74.5 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|284162505|ref|YP_003401128.1| - 1.9e-15 57.1 0.0 3.3e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|284162505|ref|YP_003401128.1| - 4.3e-11 42.8 0.0 7e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|284162505|ref|YP_003401128.1| - 0.00021 20.2 0.1 0.00036 19.5 0.1 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Enolase_C PF00113.17 gi|284162505|ref|YP_003401128.1| - 0.053 12.4 0.0 0.076 11.9 0.0 1.2 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain Asp_Glu_race PF01177.17 gi|284162506|ref|YP_003401129.1| - 3e-22 79.5 0.6 3.6e-22 79.3 0.4 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase DUF2112 PF09885.4 gi|284162506|ref|YP_003401129.1| - 0.011 15.4 0.8 0.83 9.2 0.1 2.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2112) Transp_cyt_pur PF02133.10 gi|284162507|ref|YP_003401130.1| - 3.5e-42 144.4 42.5 4.3e-42 144.1 29.5 1.1 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Hydantoinase_A PF01968.13 gi|284162508|ref|YP_003401131.1| - 6.3e-68 228.9 5.0 6.3e-68 228.9 3.5 2.6 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|284162508|ref|YP_003401131.1| - 6.8e-48 162.4 8.8 1.9e-46 157.7 1.2 2.8 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|284162508|ref|YP_003401131.1| - 2e-12 46.9 1.7 9.7e-09 34.8 0.3 2.9 2 1 1 3 3 3 2 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|284162508|ref|YP_003401131.1| - 7e-09 34.5 2.4 0.00048 18.5 0.4 2.4 2 0 0 2 2 2 2 MutL protein StbA PF06406.6 gi|284162508|ref|YP_003401131.1| - 2.8e-05 23.2 0.5 0.22 10.4 0.0 2.9 3 0 0 3 3 3 2 StbA protein ROK PF00480.15 gi|284162508|ref|YP_003401131.1| - 0.0069 16.2 1.6 0.023 14.5 0.2 2.5 3 0 0 3 3 3 1 ROK family FGGY_N PF00370.16 gi|284162508|ref|YP_003401131.1| - 0.0072 15.6 0.2 0.16 11.2 0.1 2.4 2 1 0 2 2 2 1 FGGY family of carbohydrate kinases, N-terminal domain FtsA PF14450.1 gi|284162508|ref|YP_003401131.1| - 8.4 6.2 16.6 9.7 6.0 0.4 4.3 3 2 0 4 4 4 0 Cell division protein FtsA DUF2759 PF10958.3 gi|284162510|ref|YP_003401133.1| - 0.0043 16.6 2.2 0.0043 16.6 1.5 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2759) CarboxypepD_reg PF13620.1 gi|284162510|ref|YP_003401133.1| - 0.011 15.8 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain L_HGMIC_fpl PF10242.4 gi|284162510|ref|YP_003401133.1| - 0.065 13.2 1.2 0.2 11.6 0.0 2.0 2 0 0 2 2 2 0 Lipoma HMGIC fusion partner-like protein DUF2370 PF10176.4 gi|284162510|ref|YP_003401133.1| - 0.3 10.3 1.0 0.43 9.8 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2370) Radical_SAM PF04055.16 gi|284162511|ref|YP_003401134.1| - 2.1e-19 70.2 0.2 5.3e-19 68.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily CYTL1 PF15153.1 gi|284162511|ref|YP_003401134.1| - 0.023 14.3 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 Cytokine-like protein 1 IF2_N PF04760.10 gi|284162511|ref|YP_003401134.1| - 0.076 12.6 0.2 3.3 7.4 0.1 2.7 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region AP_endonuc_2 PF01261.19 gi|284162511|ref|YP_003401134.1| - 0.12 11.6 0.0 0.26 10.5 0.0 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel zf-ZPR1 PF03367.8 gi|284162512|ref|YP_003401135.1| - 2.7e-46 156.6 0.1 4.1e-46 156.0 0.1 1.3 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DUF552 PF04472.7 gi|284162513|ref|YP_003401136.1| - 1.9e-18 66.1 1.2 3.2e-18 65.4 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF552) Flavoprotein PF02441.14 gi|284162514|ref|YP_003401137.1| - 9.8e-30 102.8 0.0 1.2e-29 102.5 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|284162514|ref|YP_003401137.1| - 0.019 14.9 0.1 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 NADH(P)-binding DUF4363 PF14276.1 gi|284162515|ref|YP_003401138.1| - 0.00058 19.5 11.8 0.013 15.1 0.1 3.5 1 1 2 3 3 3 1 Domain of unknown function (DUF4363) DUF4398 PF14346.1 gi|284162515|ref|YP_003401138.1| - 0.016 15.2 3.8 0.097 12.7 1.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4398) AAA_23 PF13476.1 gi|284162515|ref|YP_003401138.1| - 0.018 15.3 8.9 0.15 12.3 6.1 2.3 1 1 0 1 1 1 0 AAA domain Rapamycin_bind PF08771.6 gi|284162515|ref|YP_003401138.1| - 0.027 14.5 0.3 0.085 12.9 0.2 1.8 1 0 0 1 1 1 0 Rapamycin binding domain Nup54 PF13874.1 gi|284162515|ref|YP_003401138.1| - 0.03 13.9 0.0 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 YfdX PF10938.3 gi|284162515|ref|YP_003401138.1| - 0.046 13.3 3.0 3.9 7.1 2.1 2.5 1 1 1 2 2 2 0 YfdX protein Spore_III_AB PF09548.5 gi|284162515|ref|YP_003401138.1| - 0.063 13.0 2.3 5.5 6.7 0.1 3.1 3 0 0 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) Baculo_PEP_C PF04513.7 gi|284162515|ref|YP_003401138.1| - 0.078 12.8 4.4 0.048 13.4 0.5 2.2 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1191 PF06697.7 gi|284162515|ref|YP_003401138.1| - 0.16 10.7 0.1 0.3 9.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1191) BLOC1_2 PF10046.4 gi|284162515|ref|YP_003401138.1| - 0.34 11.0 8.5 9.3 6.4 0.0 3.5 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V-SNARE PF05008.10 gi|284162515|ref|YP_003401138.1| - 0.34 11.0 4.5 3 8.0 0.0 3.2 2 1 1 3 3 3 0 Vesicle transport v-SNARE protein N-terminus Laminin_II PF06009.7 gi|284162515|ref|YP_003401138.1| - 1.3 8.7 5.8 10 5.8 0.1 3.0 3 1 2 5 5 5 0 Laminin Domain II Tubulin PF00091.20 gi|284162516|ref|YP_003401139.1| - 5.6e-25 88.4 0.0 1.5e-24 87.0 0.0 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF498 PF04430.9 gi|284162517|ref|YP_003401140.1| - 3e-27 94.3 0.0 3.3e-27 94.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) Peripla_BP_2 PF01497.13 gi|284162517|ref|YP_003401140.1| - 0.0084 15.2 0.0 0.01 14.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF4550 PF15084.1 gi|284162517|ref|YP_003401140.1| - 0.12 12.5 0.2 0.25 11.4 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4550) Pyr_redox PF00070.22 gi|284162517|ref|YP_003401140.1| - 0.74 10.2 5.8 3.5 8.0 0.1 2.5 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Cpn60_TCP1 PF00118.19 gi|284162518|ref|YP_003401141.1| - 3.3e-177 589.9 14.1 3.8e-177 589.7 9.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TPR_20 PF14561.1 gi|284162518|ref|YP_003401141.1| - 0.15 12.1 1.9 1.3 9.2 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat HTH_3 PF01381.17 gi|284162519|ref|YP_003401142.1| - 2e-12 46.7 0.5 4.5e-12 45.6 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|284162519|ref|YP_003401142.1| - 7.4e-09 35.5 0.2 2.4e-08 33.9 0.2 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|284162519|ref|YP_003401142.1| - 3.3e-07 30.4 0.0 5.7e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|284162519|ref|YP_003401142.1| - 0.00018 21.0 0.1 0.0016 18.0 0.0 2.7 3 0 0 3 3 3 1 HTH domain MerR PF00376.18 gi|284162519|ref|YP_003401142.1| - 0.00049 19.5 0.0 0.00096 18.6 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.1 gi|284162519|ref|YP_003401142.1| - 0.001 18.7 0.0 0.0029 17.3 0.0 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_17 PF12728.2 gi|284162519|ref|YP_003401142.1| - 0.0017 18.5 0.0 0.0092 16.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284162519|ref|YP_003401142.1| - 0.0018 17.7 0.0 0.0044 16.4 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|284162519|ref|YP_003401142.1| - 0.0019 17.7 0.1 0.012 15.1 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_25 PF13413.1 gi|284162519|ref|YP_003401142.1| - 0.0023 17.5 0.4 0.0023 17.5 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|284162519|ref|YP_003401142.1| - 0.0026 17.5 0.0 0.011 15.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase NUMOD1 PF07453.8 gi|284162519|ref|YP_003401142.1| - 0.0056 16.4 0.0 0.026 14.3 0.0 2.2 2 0 0 2 2 2 1 NUMOD1 domain HTH_28 PF13518.1 gi|284162519|ref|YP_003401142.1| - 0.0065 16.4 0.0 0.016 15.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|284162519|ref|YP_003401142.1| - 0.0086 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 ECF sigma factor HTH_Crp_2 PF13545.1 gi|284162519|ref|YP_003401142.1| - 0.027 14.2 0.0 0.074 12.8 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_NinH PF06322.6 gi|284162519|ref|YP_003401142.1| - 0.04 13.5 0.0 0.18 11.4 0.0 2.1 2 0 0 2 2 2 0 Phage NinH protein Sigma70_r4 PF04545.11 gi|284162519|ref|YP_003401142.1| - 0.056 12.7 0.1 0.14 11.5 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|284162519|ref|YP_003401142.1| - 0.094 12.2 0.6 0.2 11.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TctA PF01970.11 gi|284162520|ref|YP_003401143.1| - 6.4e-45 153.3 34.3 8.6e-45 152.8 23.8 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family MBOAT_2 PF13813.1 gi|284162520|ref|YP_003401143.1| - 2.9 8.0 5.5 1.7 8.8 0.1 3.0 3 0 0 3 3 3 0 Membrane bound O-acyl transferase family Thi4 PF01946.12 gi|284162521|ref|YP_003401144.1| - 1e-84 283.2 1.4 1.2e-84 283.0 1.0 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|284162521|ref|YP_003401144.1| - 7.5e-09 35.1 0.8 1.4e-08 34.3 0.5 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|284162521|ref|YP_003401144.1| - 1e-08 34.5 3.6 2e-07 30.2 0.1 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284162521|ref|YP_003401144.1| - 1.4e-08 34.6 0.8 3.2e-08 33.4 0.5 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|284162521|ref|YP_003401144.1| - 9.9e-08 31.2 3.8 3.6e-06 26.0 0.1 2.7 1 1 1 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.14 gi|284162521|ref|YP_003401144.1| - 7.8e-07 28.4 0.0 1.2e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|284162521|ref|YP_003401144.1| - 8.1e-06 24.5 0.6 2.5e-05 22.9 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|284162521|ref|YP_003401144.1| - 1.1e-05 25.5 0.1 2.2e-05 24.6 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|284162521|ref|YP_003401144.1| - 0.00015 21.7 0.3 0.00019 21.3 0.2 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|284162521|ref|YP_003401144.1| - 0.00029 19.8 0.1 0.00056 18.8 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|284162521|ref|YP_003401144.1| - 0.0034 16.3 0.7 0.0054 15.7 0.0 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein Topo_Zn_Ribbon PF08272.6 gi|284162521|ref|YP_003401144.1| - 0.03 13.6 0.2 0.35 10.2 0.0 2.5 3 0 0 3 3 3 0 Topoisomerase I zinc-ribbon-like Amino_oxidase PF01593.19 gi|284162521|ref|YP_003401144.1| - 0.031 13.3 0.0 0.16 11.0 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Pyr_redox PF00070.22 gi|284162521|ref|YP_003401144.1| - 0.052 13.9 1.5 0.22 11.9 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|284162521|ref|YP_003401144.1| - 0.092 12.5 0.1 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding DNA_binding_1 PF01035.15 gi|284162522|ref|YP_003401145.1| - 3.3e-27 94.0 0.0 4.4e-27 93.6 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Big_3 PF07523.7 gi|284162522|ref|YP_003401145.1| - 0.092 12.8 0.5 9.7 6.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) TOMM6 PF15184.1 gi|284162522|ref|YP_003401145.1| - 0.21 10.9 0.8 0.39 10.0 0.0 1.7 2 0 0 2 2 2 0 Mitochondrial import receptor subunit TOM6 homolog CTP_transf_2 PF01467.21 gi|284162523|ref|YP_003401146.1| - 1.6e-18 67.2 0.0 1.9e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase AP_endonuc_2 PF01261.19 gi|284162524|ref|YP_003401147.1| - 7.1e-18 64.6 0.3 9.2e-18 64.3 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel GCHY-1 PF02649.9 gi|284162525|ref|YP_003401148.1| - 1e-80 270.9 0.1 1.1e-80 270.8 0.1 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF577 PF04510.7 gi|284162525|ref|YP_003401148.1| - 0.027 14.1 1.2 4.3 6.9 0.3 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF577) PLDc_2 PF13091.1 gi|284162526|ref|YP_003401149.1| - 1e-16 60.8 0.5 1.1e-14 54.2 0.1 2.4 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|284162526|ref|YP_003401149.1| - 1.3e-05 24.7 0.1 3.1e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 Phospholipase D Active site motif Laminin_G_3 PF13385.1 gi|284162526|ref|YP_003401149.1| - 0.043 14.0 0.3 0.19 11.9 0.1 1.9 1 1 1 2 2 2 0 Concanavalin A-like lectin/glucanases superfamily zf-DNL PF05180.7 gi|284162527|ref|YP_003401150.1| - 0.00084 19.0 0.3 0.11 12.2 0.0 2.2 2 0 0 2 2 2 2 DNL zinc finger DUF866 PF05907.8 gi|284162527|ref|YP_003401150.1| - 0.021 14.2 0.5 0.024 14.1 0.4 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) Glutaredoxin PF00462.19 gi|284162527|ref|YP_003401150.1| - 0.026 14.4 0.1 0.026 14.4 0.1 1.9 1 1 0 2 2 2 0 Glutaredoxin Lar_restr_allev PF14354.1 gi|284162527|ref|YP_003401150.1| - 0.029 14.6 0.1 0.041 14.1 0.0 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF2225 PF09986.4 gi|284162527|ref|YP_003401150.1| - 0.19 11.1 0.7 0.22 10.9 0.5 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Elf1 PF05129.8 gi|284162527|ref|YP_003401150.1| - 0.68 9.6 3.3 2.2 8.0 2.3 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Cas_Cas4 PF01930.12 gi|284162528|ref|YP_003401151.1| - 9.9e-11 41.8 4.6 4.4e-09 36.4 3.2 2.1 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|284162528|ref|YP_003401151.1| - 0.00081 18.8 2.3 0.00081 18.8 1.6 2.1 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.2 gi|284162529|ref|YP_003401152.1| - 0.00024 20.5 4.4 0.1 11.9 2.4 2.8 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily GlutR_N PF05201.10 gi|284162530|ref|YP_003401153.1| - 6.8e-36 123.1 0.0 3.2e-35 120.9 0.0 2.1 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|284162530|ref|YP_003401153.1| - 1.9e-34 118.6 0.0 1.6e-33 115.6 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|284162530|ref|YP_003401153.1| - 7.6e-19 67.5 4.4 1.8e-18 66.3 3.1 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|284162530|ref|YP_003401153.1| - 2.6e-06 26.7 0.1 4.8e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.10 gi|284162530|ref|YP_003401153.1| - 1.7e-05 23.7 0.4 5.3e-05 22.1 0.0 1.9 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family NAD_binding_2 PF03446.10 gi|284162530|ref|YP_003401153.1| - 6.8e-05 22.7 0.4 0.00046 20.0 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|284162530|ref|YP_003401153.1| - 9.3e-05 22.7 1.0 0.00023 21.5 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.14 gi|284162530|ref|YP_003401153.1| - 0.0025 16.9 0.7 0.0069 15.4 0.1 2.0 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_7 PF13241.1 gi|284162530|ref|YP_003401153.1| - 0.0071 16.5 0.1 0.029 14.6 0.0 2.0 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.7 gi|284162530|ref|YP_003401153.1| - 0.008 15.5 0.0 0.016 14.6 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain DUF4428 PF14471.1 gi|284162530|ref|YP_003401153.1| - 0.052 13.3 0.3 0.9 9.3 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) APG6 PF04111.7 gi|284162530|ref|YP_003401153.1| - 0.078 12.0 5.8 0.12 11.3 4.1 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Fib_alpha PF08702.5 gi|284162530|ref|YP_003401153.1| - 0.2 11.7 1.3 0.34 11.0 0.9 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family ThiF PF00899.16 gi|284162530|ref|YP_003401153.1| - 0.2 11.4 2.5 1.2 8.9 0.1 2.8 3 0 0 3 3 3 0 ThiF family ALAD PF00490.16 gi|284162531|ref|YP_003401154.1| - 4.2e-143 476.0 0.2 4.7e-143 475.9 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_1_2 PF00155.16 gi|284162532|ref|YP_003401155.1| - 2.1e-67 227.6 0.0 2.3e-67 227.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|284162532|ref|YP_003401155.1| - 8.8e-10 37.8 0.0 1.8e-09 36.8 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|284162532|ref|YP_003401155.1| - 1.6e-09 36.5 0.1 2.3e-09 36.0 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|284162532|ref|YP_003401155.1| - 6.4e-07 28.3 0.1 0.0039 15.8 0.0 2.2 1 1 1 2 2 2 2 Allinase Beta_elim_lyase PF01212.16 gi|284162532|ref|YP_003401155.1| - 3.5e-06 26.3 0.0 5.4e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|284162532|ref|YP_003401155.1| - 0.043 12.8 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family NAD_binding_3 PF03447.11 gi|284162532|ref|YP_003401155.1| - 0.073 13.4 0.0 0.25 11.7 0.0 1.9 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Acetyltransf_1 PF00583.19 gi|284162533|ref|YP_003401156.1| - 0.00058 19.8 0.0 0.00092 19.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|284162533|ref|YP_003401156.1| - 0.0064 16.6 0.0 0.015 15.4 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DNA_topoisoIV PF00521.15 gi|284162534|ref|YP_003401157.1| - 7.1e-161 535.7 2.0 9e-161 535.4 1.4 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|284162534|ref|YP_003401157.1| - 4.6e-29 99.4 8.9 5.3e-12 44.8 0.0 5.9 5 1 1 6 6 6 4 DNA gyrase C-terminal domain, beta-propeller Radical_SAM PF04055.16 gi|284162535|ref|YP_003401158.1| - 3.2e-23 82.7 0.1 1.3e-22 80.7 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284162535|ref|YP_003401158.1| - 0.0025 17.9 0.6 0.0076 16.3 0.1 2.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284162535|ref|YP_003401158.1| - 0.0036 17.3 0.0 0.0073 16.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TRAM PF01938.15 gi|284162535|ref|YP_003401158.1| - 0.085 12.6 0.3 0.23 11.2 0.1 1.9 2 0 0 2 2 2 0 TRAM domain TrmB PF01978.14 gi|284162536|ref|YP_003401159.1| - 2.3e-05 23.9 0.6 2.7e-05 23.7 0.4 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|284162536|ref|YP_003401159.1| - 0.0028 17.4 0.3 0.0031 17.2 0.2 1.2 1 1 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.11 gi|284162536|ref|YP_003401159.1| - 0.0044 17.0 0.0 0.0056 16.7 0.0 1.4 1 1 0 1 1 1 1 HemN C-terminal domain Penicillinase_R PF03965.11 gi|284162536|ref|YP_003401159.1| - 0.0093 16.0 0.5 0.027 14.5 0.1 1.7 1 1 1 2 2 2 1 Penicillinase repressor DUF2250 PF10007.4 gi|284162536|ref|YP_003401159.1| - 0.015 15.2 0.6 0.018 14.9 0.4 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|284162536|ref|YP_003401159.1| - 0.03 14.4 0.0 0.046 13.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|284162536|ref|YP_003401159.1| - 0.045 14.0 0.0 0.058 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|284162536|ref|YP_003401159.1| - 0.07 12.6 0.2 0.075 12.5 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_12 PF08461.5 gi|284162536|ref|YP_003401159.1| - 0.08 12.6 0.3 0.16 11.7 0.2 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain FeoC PF09012.5 gi|284162536|ref|YP_003401159.1| - 0.08 12.6 0.3 0.18 11.5 0.1 1.6 1 1 1 2 2 2 0 FeoC like transcriptional regulator HTH_20 PF12840.2 gi|284162536|ref|YP_003401159.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain SpoU_methylase PF00588.14 gi|284162537|ref|YP_003401160.1| - 8.3e-42 142.4 0.0 1.9e-41 141.2 0.0 1.5 2 0 0 2 2 2 1 SpoU rRNA Methylase family SpoU_sub_bind PF08032.7 gi|284162537|ref|YP_003401160.1| - 1.2e-09 38.1 0.6 6.6e-09 35.8 0.0 2.3 3 0 0 3 3 3 1 RNA 2'-O ribose methyltransferase substrate binding Ribosomal_L7Ae PF01248.21 gi|284162537|ref|YP_003401160.1| - 8.5e-06 25.2 0.3 1.8e-05 24.1 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|284162537|ref|YP_003401160.1| - 0.019 14.7 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 PELOTA RNA binding domain Isochorismatase PF00857.15 gi|284162537|ref|YP_003401160.1| - 0.081 12.8 0.1 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 Isochorismatase family Peripla_BP_4 PF13407.1 gi|284162537|ref|YP_003401160.1| - 0.096 12.0 1.7 9.5 5.4 0.1 3.0 2 1 1 3 3 3 0 Periplasmic binding protein domain DUF4580 PF15162.1 gi|284162537|ref|YP_003401160.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4580) EamA PF00892.15 gi|284162538|ref|YP_003401161.1| - 6.9e-24 84.2 15.7 7.9e-24 84.1 10.9 1.0 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|284162538|ref|YP_003401161.1| - 1.3e-09 38.2 8.3 2.2e-09 37.4 5.8 1.4 1 0 0 1 1 1 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|284162538|ref|YP_003401161.1| - 0.00039 20.2 9.7 0.0019 17.9 6.7 2.1 1 1 0 1 1 1 1 Uncharacterised protein family UPF0546 UAA PF08449.6 gi|284162538|ref|YP_003401161.1| - 0.023 13.6 7.7 0.028 13.3 5.4 1.1 1 0 0 1 1 1 0 UAA transporter family DUF1365 PF07103.6 gi|284162538|ref|YP_003401161.1| - 0.17 10.8 0.2 0.22 10.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1365) DUF1097 PF06496.6 gi|284162538|ref|YP_003401161.1| - 0.3 10.9 9.2 0.19 11.5 4.9 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1097) TPT PF03151.11 gi|284162538|ref|YP_003401161.1| - 1.8 8.1 12.1 3.7 7.1 8.4 1.7 1 1 0 1 1 1 0 Triose-phosphate Transporter family Claudin_2 PF13903.1 gi|284162538|ref|YP_003401161.1| - 5.2 6.7 10.8 8.3 6.0 6.9 1.9 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction CHD5 PF04420.9 gi|284162539|ref|YP_003401162.1| - 0.021 14.5 0.6 0.021 14.5 0.4 1.9 2 1 0 2 2 2 0 CHD5-like protein FtsX PF02687.16 gi|284162539|ref|YP_003401162.1| - 0.11 12.2 12.2 0.4 10.4 3.3 3.0 3 0 0 3 3 3 0 FtsX-like permease family Vpu PF00558.14 gi|284162539|ref|YP_003401162.1| - 0.15 11.6 0.0 0.15 11.6 0.0 2.6 3 0 0 3 3 3 0 Vpu protein DUF788 PF05620.6 gi|284162539|ref|YP_003401162.1| - 0.38 10.6 8.1 0.086 12.6 3.4 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF788) Adeno_E3_CR2 PF02439.10 gi|284162539|ref|YP_003401162.1| - 1.4 8.5 0.1 1.4 8.5 0.0 2.8 3 0 0 3 3 3 0 Adenovirus E3 region protein CR2 AIRS_C PF02769.17 gi|284162541|ref|YP_003401164.1| - 1e-14 54.8 1.1 2e-14 53.8 0.7 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|284162541|ref|YP_003401164.1| - 3.6e-13 49.5 0.2 8e-13 48.4 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain NYD-SP28 PF14772.1 gi|284162541|ref|YP_003401164.1| - 0.0021 18.1 0.1 0.0053 16.8 0.1 1.7 1 0 0 1 1 1 1 Sperm tail POTRA_1 PF08478.5 gi|284162541|ref|YP_003401164.1| - 0.1 12.6 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 POTRA domain, FtsQ-type PRC PF05239.11 gi|284162542|ref|YP_003401165.1| - 7.8e-11 41.6 0.2 8.4e-11 41.5 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF1614 PF07758.6 gi|284162543|ref|YP_003401166.1| - 1.6e-46 158.2 14.1 2.1e-46 157.8 9.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) AdoHcyase PF05221.12 gi|284162545|ref|YP_003401168.1| - 4.1e-61 206.2 0.0 5.2e-61 205.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|284162545|ref|YP_003401168.1| - 1.6e-51 174.4 2.0 1.7e-51 174.2 0.4 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|284162545|ref|YP_003401168.1| - 7.8e-11 41.4 0.1 2.1e-10 40.0 0.1 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|284162545|ref|YP_003401168.1| - 1.5e-08 34.2 0.1 6.6e-08 32.0 0.1 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain THF_DHG_CYH_C PF02882.14 gi|284162545|ref|YP_003401168.1| - 0.015 14.4 0.2 0.078 12.0 0.1 2.0 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.16 gi|284162545|ref|YP_003401168.1| - 0.016 14.8 0.2 0.031 13.8 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|284162545|ref|YP_003401168.1| - 0.061 12.9 1.5 0.77 9.3 0.4 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2150 PF09920.4 gi|284162546|ref|YP_003401169.1| - 3.4e-43 147.4 4.1 4e-43 147.2 2.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DUF2857 PF11198.3 gi|284162546|ref|YP_003401169.1| - 0.07 12.6 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) Nudix_N PF12535.3 gi|284162546|ref|YP_003401169.1| - 0.076 12.4 0.2 0.17 11.3 0.1 1.6 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal DUF2363 PF10155.4 gi|284162546|ref|YP_003401169.1| - 0.084 12.8 0.1 0.82 9.6 0.0 2.4 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2363) Orbi_VP5 PF00901.12 gi|284162546|ref|YP_003401169.1| - 0.23 9.6 1.8 0.54 8.3 1.3 1.7 1 1 0 1 1 1 0 Orbivirus outer capsid protein VP5 Methyltrn_RNA_2 PF04013.7 gi|284162547|ref|YP_003401170.1| - 6.5e-69 231.4 0.0 7.3e-69 231.3 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SpoU_methylase PF00588.14 gi|284162547|ref|YP_003401170.1| - 0.011 15.6 0.0 0.38 10.6 0.0 2.1 1 1 1 2 2 2 0 SpoU rRNA Methylase family Radical_SAM PF04055.16 gi|284162548|ref|YP_003401171.1| - 6.2e-25 88.2 0.1 5.4e-24 85.2 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|284162548|ref|YP_003401171.1| - 3.3e-05 24.0 0.6 6.3e-05 23.1 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain zinc_ribbon_2 PF13240.1 gi|284162548|ref|YP_003401171.1| - 0.00052 19.4 0.5 0.00052 19.4 0.3 2.7 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284162548|ref|YP_003401171.1| - 0.0015 17.6 5.2 0.098 11.9 0.0 3.0 3 0 0 3 3 3 2 zinc-ribbon domain AP_endonuc_2 PF01261.19 gi|284162548|ref|YP_003401171.1| - 0.0046 16.2 0.0 0.044 13.0 0.0 2.2 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Fer4_14 PF13394.1 gi|284162548|ref|YP_003401171.1| - 0.014 15.3 0.3 0.069 13.1 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain DZR PF12773.2 gi|284162548|ref|YP_003401171.1| - 0.021 14.6 0.1 0.021 14.6 0.1 2.9 3 0 0 3 3 3 0 Double zinc ribbon UPF0547 PF10571.4 gi|284162548|ref|YP_003401171.1| - 0.031 13.9 3.8 0.04 13.6 0.0 2.8 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|284162548|ref|YP_003401171.1| - 0.056 12.7 5.0 0.24 10.7 0.1 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding HGD-D PF06050.8 gi|284162548|ref|YP_003401171.1| - 0.07 11.9 0.0 1.5 7.5 0.0 2.4 1 1 2 3 3 3 0 2-hydroxyglutaryl-CoA dehydratase, D-component zf-C4_Topoisom PF01396.14 gi|284162548|ref|YP_003401171.1| - 0.17 11.3 5.0 1.2 8.6 0.0 3.4 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.1 gi|284162548|ref|YP_003401171.1| - 2.7 8.1 12.5 7.2 6.7 0.0 4.2 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|284162548|ref|YP_003401171.1| - 8.8 6.2 15.5 30 4.5 0.1 4.3 4 0 0 4 4 4 0 Transposase zinc-ribbon domain PHP PF02811.14 gi|284162549|ref|YP_003401172.1| - 8.4e-16 58.2 1.7 1.4e-15 57.4 1.2 1.3 1 1 0 1 1 1 1 PHP domain SIS_2 PF13580.1 gi|284162549|ref|YP_003401172.1| - 0.0096 15.6 0.1 1.3 8.7 0.0 2.3 2 0 0 2 2 2 2 SIS domain PHP_C PF13263.1 gi|284162549|ref|YP_003401172.1| - 0.037 13.5 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 PHP-associated Methyltransf_31 PF13847.1 gi|284162549|ref|YP_003401172.1| - 0.092 12.3 0.2 0.63 9.6 0.0 2.2 2 1 1 3 3 3 0 Methyltransferase domain ParA PF10609.4 gi|284162550|ref|YP_003401173.1| - 4.6e-31 106.5 0.1 7.9e-31 105.7 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|284162550|ref|YP_003401173.1| - 3e-25 88.7 0.1 4.5e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|284162550|ref|YP_003401173.1| - 3.3e-10 39.4 0.0 7.5e-10 38.3 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|284162550|ref|YP_003401173.1| - 2.6e-08 33.9 0.0 9.3e-08 32.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|284162550|ref|YP_003401173.1| - 6.6e-07 28.6 4.2 1.5e-06 27.4 0.8 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|284162550|ref|YP_003401173.1| - 3.8e-06 26.2 0.1 0.0006 19.0 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Desulfoferrod_N PF06397.7 gi|284162550|ref|YP_003401173.1| - 8.4e-05 21.8 1.1 0.00017 20.8 0.7 1.5 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain AAA_25 PF13481.1 gi|284162550|ref|YP_003401173.1| - 0.00037 19.9 0.0 0.0056 16.0 0.1 2.3 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|284162550|ref|YP_003401173.1| - 0.00065 18.8 0.1 0.001 18.1 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein APS_kinase PF01583.15 gi|284162550|ref|YP_003401173.1| - 0.0012 18.5 0.1 0.0022 17.6 0.1 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase GFO_IDH_MocA PF01408.17 gi|284162550|ref|YP_003401173.1| - 0.0012 19.3 0.0 0.002 18.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold MobB PF03205.9 gi|284162550|ref|YP_003401173.1| - 0.0024 17.5 0.5 0.011 15.3 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|284162550|ref|YP_003401173.1| - 0.0043 15.8 0.3 0.0085 14.9 0.2 1.4 1 0 0 1 1 1 1 ArgK protein SRP54 PF00448.17 gi|284162550|ref|YP_003401173.1| - 0.0057 16.1 0.7 0.0057 16.1 0.5 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_26 PF13500.1 gi|284162550|ref|YP_003401173.1| - 0.0069 16.0 0.1 0.46 10.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|284162550|ref|YP_003401173.1| - 0.014 14.8 0.1 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|284162550|ref|YP_003401173.1| - 0.015 15.0 1.3 0.14 11.8 0.1 2.4 2 0 0 2 2 2 0 NTPase AAA_17 PF13207.1 gi|284162550|ref|YP_003401173.1| - 0.016 16.0 0.3 0.066 14.0 0.2 2.1 2 1 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|284162550|ref|YP_003401173.1| - 0.02 14.1 0.1 0.036 13.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 YhjQ PF06564.7 gi|284162550|ref|YP_003401173.1| - 0.034 13.5 0.1 0.12 11.6 0.1 1.7 2 0 0 2 2 2 0 YhjQ protein AAA_19 PF13245.1 gi|284162550|ref|YP_003401173.1| - 0.038 13.7 1.6 0.9 9.3 0.1 2.6 2 1 0 2 2 2 0 Part of AAA domain DUF258 PF03193.11 gi|284162550|ref|YP_003401173.1| - 0.044 12.9 0.1 0.092 11.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zn_Tnp_IS1595 PF12760.2 gi|284162550|ref|YP_003401173.1| - 0.067 13.0 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain MCR_D PF02505.9 gi|284162550|ref|YP_003401173.1| - 0.077 12.5 0.2 0.15 11.6 0.2 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase operon protein D SIS_2 PF13580.1 gi|284162550|ref|YP_003401173.1| - 0.092 12.4 1.9 0.26 11.0 0.0 2.5 3 1 0 3 3 3 0 SIS domain AAA_29 PF13555.1 gi|284162550|ref|YP_003401173.1| - 0.11 12.0 0.2 0.68 9.5 0.1 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|284162550|ref|YP_003401173.1| - 0.13 11.6 0.2 0.18 11.1 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|284162550|ref|YP_003401173.1| - 0.14 12.4 0.1 0.3 11.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain PAS_9 PF13426.1 gi|284162551|ref|YP_003401174.1| - 7.5e-13 48.7 0.0 3.6e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|284162551|ref|YP_003401174.1| - 5.8e-12 45.3 0.0 2.5e-11 43.3 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|284162551|ref|YP_003401174.1| - 1.2e-11 44.6 0.0 2.8e-11 43.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|284162551|ref|YP_003401174.1| - 1.3e-07 31.6 0.0 3.7e-07 30.1 0.0 1.8 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|284162551|ref|YP_003401174.1| - 5.2e-06 26.3 0.4 3.1e-05 23.8 0.1 2.5 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|284162551|ref|YP_003401174.1| - 7.1e-05 22.5 0.0 0.00024 20.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain Response_reg PF00072.19 gi|284162551|ref|YP_003401174.1| - 0.00026 20.9 0.0 0.00087 19.2 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS_11 PF14598.1 gi|284162551|ref|YP_003401174.1| - 0.0058 16.5 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain GAF_2 PF13185.1 gi|284162551|ref|YP_003401174.1| - 0.044 14.2 0.0 0.082 13.3 0.0 1.4 1 0 0 1 1 1 0 GAF domain Na_Ca_ex PF01699.19 gi|284162552|ref|YP_003401175.1| - 3.2e-19 68.9 21.7 1.8e-11 43.8 3.8 2.6 2 0 0 2 2 2 2 Sodium/calcium exchanger protein PPDK_N PF01326.14 gi|284162553|ref|YP_003401176.1| - 4.8e-108 361.1 0.1 1.6e-107 359.4 0.0 1.7 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|284162553|ref|YP_003401176.1| - 3e-86 288.9 0.7 6.5e-86 287.8 0.5 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|284162553|ref|YP_003401176.1| - 8.6e-29 98.9 1.9 2.6e-28 97.3 1.3 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|284162553|ref|YP_003401176.1| - 0.00048 19.0 0.1 0.0023 16.8 0.1 2.0 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family PEP-utilisers_N PF05524.8 gi|284162553|ref|YP_003401176.1| - 0.043 13.6 0.5 3 7.6 0.0 2.7 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal ALMT PF11744.3 gi|284162553|ref|YP_003401176.1| - 0.051 12.2 0.1 0.076 11.6 0.0 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF4404 PF14357.1 gi|284162553|ref|YP_003401176.1| - 0.073 13.4 0.3 24 5.4 0.3 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) polyprenyl_synt PF00348.12 gi|284162554|ref|YP_003401177.1| - 3e-46 157.3 0.1 4e-46 156.9 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase UPF0020 PF01170.13 gi|284162555|ref|YP_003401178.1| - 1.1e-52 178.2 0.0 1.4e-52 177.8 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.12 gi|284162555|ref|YP_003401178.1| - 1.7e-27 96.0 1.0 1.7e-27 96.0 0.7 1.8 2 0 0 2 2 2 1 THUMP domain Methyltransf_26 PF13659.1 gi|284162555|ref|YP_003401178.1| - 8.9e-15 54.7 0.0 1.6e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|284162555|ref|YP_003401178.1| - 3.3e-05 23.1 0.0 9.8e-05 21.5 0.0 1.7 1 1 0 1 1 1 1 N-6 DNA Methylase N6_N4_Mtase PF01555.13 gi|284162555|ref|YP_003401178.1| - 8e-05 22.2 0.0 0.0007 19.1 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Methyltransf_15 PF09445.5 gi|284162555|ref|YP_003401178.1| - 0.00021 20.8 0.0 0.0019 17.7 0.0 2.1 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|284162555|ref|YP_003401178.1| - 0.0054 16.3 0.1 0.12 12.0 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|284162555|ref|YP_003401178.1| - 0.0075 16.6 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|284162555|ref|YP_003401178.1| - 0.057 12.7 0.0 0.16 11.3 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase small domain DUF1887 PF09002.6 gi|284162556|ref|YP_003401179.1| - 0.038 12.4 0.1 0.042 12.2 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) Lipase PF00151.14 gi|284162556|ref|YP_003401179.1| - 0.1 11.7 0.1 0.12 11.6 0.1 1.0 1 0 0 1 1 1 0 Lipase Yip1 PF04893.12 gi|284162557|ref|YP_003401180.1| - 4.1e-27 94.7 10.0 5e-27 94.4 6.9 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|284162557|ref|YP_003401180.1| - 5.3e-09 35.9 8.0 6.7e-09 35.6 5.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DUF4199 PF13858.1 gi|284162557|ref|YP_003401180.1| - 0.00052 19.9 2.9 0.00052 19.9 2.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) DUF433 PF04255.9 gi|284162557|ref|YP_003401180.1| - 0.016 14.6 0.1 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Adeno_PX PF05829.7 gi|284162557|ref|YP_003401180.1| - 0.14 11.6 0.1 0.14 11.6 0.1 2.5 2 1 1 3 3 3 0 Adenovirus late L2 mu core protein (Protein X) Na_H_antiport_2 PF13726.1 gi|284162557|ref|YP_003401180.1| - 0.28 11.1 6.9 2 8.3 0.3 2.6 2 1 1 3 3 3 0 Na+-H+ antiporter family DUF3169 PF11368.3 gi|284162557|ref|YP_003401180.1| - 0.85 8.7 10.0 39 3.3 7.0 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3169) T2SF PF00482.18 gi|284162557|ref|YP_003401180.1| - 0.95 9.3 4.9 0.23 11.3 0.2 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F DUF1761 PF08570.5 gi|284162557|ref|YP_003401180.1| - 2.9 7.9 8.9 1.2 9.1 1.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1761) ILVD_EDD PF00920.16 gi|284162558|ref|YP_003401181.1| - 3.2e-205 682.5 0.0 3.6e-205 682.3 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family DUF3006 PF11213.3 gi|284162558|ref|YP_003401181.1| - 0.0038 16.9 0.7 1.4 8.7 0.3 3.1 2 1 1 3 3 3 2 Protein of unknown function (DUF3006) Amidohydro_1 PF01979.15 gi|284162559|ref|YP_003401182.1| - 1.6e-05 24.6 0.0 0.0013 18.4 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family DUF4229 PF14012.1 gi|284162560|ref|YP_003401183.1| - 3.2 7.7 8.8 1.2 9.0 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4229) ACT_6 PF13740.1 gi|284162562|ref|YP_003401185.1| - 5.3e-23 80.5 0.6 2.6e-12 46.2 0.0 2.4 2 0 0 2 2 2 2 ACT domain HAD PF12710.2 gi|284162562|ref|YP_003401185.1| - 7.2e-21 75.2 0.3 1.2e-20 74.4 0.2 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ACT PF01842.20 gi|284162562|ref|YP_003401185.1| - 1.6e-17 62.6 7.0 3.5e-08 32.7 0.0 3.3 4 0 0 4 4 4 2 ACT domain Hydrolase_3 PF08282.7 gi|284162562|ref|YP_003401185.1| - 1.4e-16 60.8 0.2 1.1e-10 41.5 0.5 2.9 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|284162562|ref|YP_003401185.1| - 8.4e-14 52.4 5.4 2.7e-12 47.5 3.7 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase ACT_4 PF13291.1 gi|284162562|ref|YP_003401185.1| - 2.2e-09 37.5 3.4 0.00028 21.1 0.2 3.2 3 0 0 3 3 3 2 ACT domain Put_Phosphatase PF06888.7 gi|284162562|ref|YP_003401185.1| - 1e-08 34.6 0.0 5e-06 25.8 0.0 2.2 2 0 0 2 2 2 2 Putative Phosphatase HAD_2 PF13419.1 gi|284162562|ref|YP_003401185.1| - 5.2e-08 33.3 0.0 7.3e-07 29.5 0.0 2.5 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase ACT_7 PF13840.1 gi|284162562|ref|YP_003401185.1| - 2.4e-05 23.7 0.5 0.49 9.9 0.1 3.3 3 0 0 3 3 3 2 ACT domain Acid_PPase PF12689.2 gi|284162562|ref|YP_003401185.1| - 0.023 14.3 0.0 0.094 12.3 0.0 2.0 1 1 0 1 1 1 0 Acid Phosphatase B12-binding PF02310.14 gi|284162562|ref|YP_003401185.1| - 0.028 14.2 0.0 0.44 10.4 0.0 2.6 2 0 0 2 2 2 0 B12 binding domain Hydrolase_6 PF13344.1 gi|284162562|ref|YP_003401185.1| - 0.03 14.1 0.0 0.13 12.1 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|284162562|ref|YP_003401185.1| - 0.081 12.2 0.1 4.8 6.4 0.0 2.3 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Sulfatase PF00884.18 gi|284162562|ref|YP_003401185.1| - 0.23 10.6 0.0 0.35 10.0 0.0 1.2 1 0 0 1 1 1 0 Sulfatase Ribosomal_L16 PF00252.13 gi|284162564|ref|YP_003401187.1| - 8.3e-34 116.2 0.2 9.7e-34 115.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF3509 PF12021.3 gi|284162564|ref|YP_003401187.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3509) NAD_synthase PF02540.12 gi|284162565|ref|YP_003401188.1| - 4.3e-88 294.3 0.0 7e-49 165.9 0.0 2.3 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|284162565|ref|YP_003401188.1| - 2.3e-07 29.7 0.0 4.9e-06 25.3 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase Intein_splicing PF14890.1 gi|284162565|ref|YP_003401188.1| - 1.4e-05 24.1 0.0 0.00011 21.2 0.0 2.0 1 1 0 1 1 1 1 Intein splicing domain Hint_2 PF13403.1 gi|284162565|ref|YP_003401188.1| - 5.1e-05 23.2 0.0 0.00021 21.2 0.0 2.0 1 1 0 1 1 1 1 Hint domain LAGLIDADG_3 PF14528.1 gi|284162565|ref|YP_003401188.1| - 0.00025 21.2 0.7 0.013 15.7 0.0 3.2 3 0 0 3 3 3 1 LAGLIDADG-like domain PT-HINT PF07591.6 gi|284162565|ref|YP_003401188.1| - 0.0017 18.2 0.0 0.0037 17.1 0.0 1.5 1 0 0 1 1 1 1 Pretoxin HINT domain Hom_end PF05204.9 gi|284162565|ref|YP_003401188.1| - 0.0029 17.5 0.0 0.031 14.2 0.0 2.7 3 0 0 3 3 3 1 Homing endonuclease QueC PF06508.8 gi|284162565|ref|YP_003401188.1| - 0.031 13.5 0.0 0.3 10.3 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Hint PF01079.15 gi|284162565|ref|YP_003401188.1| - 0.047 12.8 0.0 0.14 11.3 0.0 1.7 1 1 0 1 1 1 0 Hint module DUF433 PF04255.9 gi|284162565|ref|YP_003401188.1| - 0.087 12.2 0.0 0.27 10.6 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Cnd1 PF12717.2 gi|284162566|ref|YP_003401189.1| - 7.6e-07 29.1 0.8 1.5e-05 24.9 0.1 2.9 2 1 1 3 3 3 1 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.1 gi|284162566|ref|YP_003401189.1| - 8.2e-07 29.2 0.2 2.3e-05 24.5 0.2 2.5 1 1 1 2 2 2 1 HEAT repeats HEAT_EZ PF13513.1 gi|284162566|ref|YP_003401189.1| - 8.1e-06 26.1 0.0 0.013 15.9 0.0 3.2 2 1 1 3 3 3 1 HEAT-like repeat HEAT PF02985.17 gi|284162566|ref|YP_003401189.1| - 1.6e-05 24.5 0.2 0.00012 21.8 0.0 2.5 2 1 0 2 2 2 1 HEAT repeat Adaptin_N PF01602.15 gi|284162566|ref|YP_003401189.1| - 0.00017 20.0 2.9 0.0038 15.6 0.2 2.1 1 1 0 1 1 1 1 Adaptin N terminal region DUF2019 PF09450.5 gi|284162566|ref|YP_003401189.1| - 0.045 13.6 0.0 0.73 9.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2019) Vac14_Fab1_bd PF12755.2 gi|284162566|ref|YP_003401189.1| - 0.066 13.5 0.2 0.26 11.6 0.0 2.0 2 0 0 2 2 2 0 Vacuolar 14 Fab1-binding region RIX1 PF08167.7 gi|284162566|ref|YP_003401189.1| - 0.12 11.9 0.5 1.1 8.9 0.1 2.5 1 1 0 2 2 2 0 rRNA processing/ribosome biogenesis DEAD PF00270.24 gi|284162567|ref|YP_003401190.1| - 8.3e-28 96.9 0.0 9.4e-27 93.5 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|284162567|ref|YP_003401190.1| - 5.1e-17 61.4 0.0 3e-16 59.0 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|284162567|ref|YP_003401190.1| - 2.6e-11 43.9 0.1 7.1e-11 42.5 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.10 gi|284162567|ref|YP_003401190.1| - 1.9e-05 24.5 0.0 3.3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|284162567|ref|YP_003401190.1| - 0.00079 18.8 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein UPF0052 PF01933.13 gi|284162568|ref|YP_003401191.1| - 9.9e-54 182.6 0.0 1.2e-53 182.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 SUKH_5 PF14567.1 gi|284162568|ref|YP_003401191.1| - 0.056 12.9 0.0 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 SMI1-KNR4 cell-wall Peptidase_M24 PF00557.19 gi|284162569|ref|YP_003401192.1| - 3.9e-49 167.0 0.4 4.6e-49 166.8 0.3 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 ATP-cone PF03477.11 gi|284162569|ref|YP_003401192.1| - 0.011 16.1 0.1 6.1 7.3 0.0 2.4 2 0 0 2 2 2 0 ATP cone domain XPG_I PF00867.13 gi|284162570|ref|YP_003401193.1| - 7.5e-27 93.2 0.0 1.4e-26 92.4 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|284162570|ref|YP_003401193.1| - 4.7e-23 81.3 0.0 9.9e-23 80.3 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|284162570|ref|YP_003401193.1| - 0.0002 21.5 0.0 0.00048 20.3 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold MoCF_biosynth PF00994.19 gi|284162571|ref|YP_003401194.1| - 1.1e-28 99.5 0.0 1.3e-28 99.1 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Phage_integrase PF00589.17 gi|284162572|ref|YP_003401195.1| - 3.7e-12 46.2 1.3 2.2e-11 43.7 0.4 2.2 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|284162572|ref|YP_003401195.1| - 0.043 14.1 0.6 0.2 11.9 0.1 2.4 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|284162572|ref|YP_003401195.1| - 0.17 12.0 1.9 1.1 9.4 0.0 2.9 2 1 2 4 4 4 0 Phage integrase, N-terminal SAM-like domain HTH_38 PF13936.1 gi|284162573|ref|YP_003401196.1| - 0.012 15.0 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1700 PF08006.6 gi|284162573|ref|YP_003401196.1| - 0.014 14.7 0.0 0.014 14.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) HTH_23 PF13384.1 gi|284162573|ref|YP_003401196.1| - 0.016 14.8 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain KorB PF08535.5 gi|284162573|ref|YP_003401196.1| - 0.028 14.5 0.0 0.049 13.7 0.0 1.5 1 1 0 1 1 1 0 KorB domain Sigma70_r4_2 PF08281.7 gi|284162573|ref|YP_003401196.1| - 0.079 12.4 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|284162573|ref|YP_003401196.1| - 0.093 12.7 0.0 0.096 12.7 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain Sec8_exocyst PF04048.9 gi|284162574|ref|YP_003401197.1| - 0.016 14.8 1.1 3.3 7.3 0.4 2.0 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain IF-2 PF11987.3 gi|284162574|ref|YP_003401197.1| - 0.016 15.0 0.1 0.031 14.1 0.1 1.5 1 0 0 1 1 1 0 Translation-initiation factor 2 Spc24 PF08286.6 gi|284162574|ref|YP_003401197.1| - 0.16 11.7 2.1 0.2 11.3 1.2 1.4 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DivIVA PF05103.8 gi|284162574|ref|YP_003401197.1| - 0.75 9.8 5.9 0.87 9.6 1.1 2.0 2 0 0 2 2 2 0 DivIVA protein DUF2341 PF10102.4 gi|284162575|ref|YP_003401198.1| - 1.5e-19 69.9 4.0 2.6e-19 69.1 1.5 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) Laminin_G_3 PF13385.1 gi|284162575|ref|YP_003401198.1| - 2.7e-05 24.4 3.2 2.7e-05 24.4 2.2 2.6 1 1 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily DUF1080 PF06439.6 gi|284162575|ref|YP_003401198.1| - 0.0003 20.7 2.9 0.0019 18.1 0.3 2.8 2 1 0 2 2 2 1 Domain of Unknown Function (DUF1080) Laminin_G_2 PF02210.19 gi|284162575|ref|YP_003401198.1| - 0.0066 16.4 0.0 0.022 14.8 0.0 1.8 2 0 0 2 2 2 1 Laminin G domain EF-hand_6 PF13405.1 gi|284162575|ref|YP_003401198.1| - 1.3 9.0 5.2 1.6 8.8 0.4 3.1 3 0 0 3 3 3 0 EF-hand domain DUF2612 PF11041.3 gi|284162576|ref|YP_003401199.1| - 2.9e-07 30.2 0.2 0.0012 18.4 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF2612) Baseplate_J PF04865.9 gi|284162576|ref|YP_003401199.1| - 0.0011 18.4 0.0 0.015 14.6 0.0 2.1 1 1 1 2 2 2 1 Baseplate J-like protein DUF2522 PF10747.4 gi|284162576|ref|YP_003401199.1| - 0.013 15.5 0.1 0.018 15.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2522) HTH_Tnp_1 PF01527.15 gi|284162576|ref|YP_003401199.1| - 0.034 14.1 0.0 0.056 13.4 0.0 1.5 1 0 0 1 1 1 0 Transposase Baseplate_J PF04865.9 gi|284162577|ref|YP_003401200.1| - 8.3e-36 123.5 5.9 1.8e-35 122.4 4.1 1.6 1 1 0 1 1 1 1 Baseplate J-like protein UN_NPL4 PF11543.3 gi|284162577|ref|YP_003401200.1| - 0.021 15.0 0.2 0.16 12.3 0.0 2.5 3 0 0 3 3 3 0 Nuclear pore localisation protein NPL4 DUF2205 PF10224.4 gi|284162577|ref|YP_003401200.1| - 0.069 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) HMA PF00403.21 gi|284162577|ref|YP_003401200.1| - 0.78 9.9 5.0 8.9 6.5 0.0 3.8 4 0 0 4 4 4 0 Heavy-metal-associated domain GPW_gp25 PF04965.9 gi|284162578|ref|YP_003401201.1| - 1.9e-08 33.7 0.0 2.3e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF1371 PF07115.6 gi|284162578|ref|YP_003401201.1| - 1.4e-05 25.1 0.2 1.8e-05 24.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1371) DUF2634 PF10934.3 gi|284162578|ref|YP_003401201.1| - 0.0022 17.7 0.0 0.0026 17.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) Big_3 PF07523.7 gi|284162580|ref|YP_003401203.1| - 0.011 15.7 0.2 0.31 11.1 0.1 2.5 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) DUF1248 PF06852.7 gi|284162580|ref|YP_003401203.1| - 0.069 12.4 0.1 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1248) PhageMin_Tail PF10145.4 gi|284162583|ref|YP_003401206.1| - 1.4e-39 135.8 11.7 9.1e-38 129.9 1.3 3.0 3 0 0 3 3 3 2 Phage-related minor tail protein HR1 PF02185.11 gi|284162583|ref|YP_003401206.1| - 0.014 15.1 0.3 2.4 7.9 0.0 2.9 2 0 0 2 2 2 0 Hr1 repeat DUF348 PF03990.9 gi|284162583|ref|YP_003401206.1| - 0.046 13.3 0.0 0.16 11.5 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF348) Laminin_II PF06009.7 gi|284162583|ref|YP_003401206.1| - 2.4 7.9 6.7 14 5.3 0.0 3.9 3 1 1 4 4 4 0 Laminin Domain II XkdN PF08890.6 gi|284162585|ref|YP_003401208.1| - 0.059 13.1 0.3 0.087 12.5 0.2 1.4 1 1 0 1 1 1 0 Phage XkdN-like protein HeH PF12949.2 gi|284162585|ref|YP_003401208.1| - 0.065 12.7 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 HeH/LEM domain Hen1_L PF12623.2 gi|284162585|ref|YP_003401208.1| - 0.084 11.6 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 RNA repair, ligase-Pnkp-associating, region of Hen1 TrmB PF01978.14 gi|284162587|ref|YP_003401210.1| - 5.6e-06 25.9 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284162587|ref|YP_003401210.1| - 0.00024 20.8 0.0 0.00044 20.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284162587|ref|YP_003401210.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|284162587|ref|YP_003401210.1| - 0.012 15.6 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|284162587|ref|YP_003401210.1| - 0.014 14.9 0.1 0.035 13.6 0.0 1.7 2 0 0 2 2 2 0 TFIIE alpha subunit HxlR PF01638.12 gi|284162587|ref|YP_003401210.1| - 0.025 14.2 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF505 PF04458.7 gi|284162587|ref|YP_003401210.1| - 0.038 12.1 0.0 0.047 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Rrf2 PF02082.15 gi|284162587|ref|YP_003401210.1| - 0.048 13.7 0.0 0.087 12.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator FeoC PF09012.5 gi|284162587|ref|YP_003401210.1| - 0.068 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator ERAP1_C PF11838.3 gi|284162587|ref|YP_003401210.1| - 0.076 12.2 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 ERAP1-like C-terminal domain RE_XamI PF09572.5 gi|284162588|ref|YP_003401211.1| - 0.14 11.5 0.0 5.4 6.3 0.0 2.1 1 1 1 2 2 2 0 XamI restriction endonuclease SoxY PF13501.1 gi|284162589|ref|YP_003401212.1| - 0.052 13.6 0.3 0.36 10.8 0.0 2.1 2 1 0 2 2 2 0 Sulfur oxidation protein SoxY DUF3383 PF11863.3 gi|284162590|ref|YP_003401213.1| - 3e-27 95.4 10.1 9.1e-22 77.3 3.4 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3383) Baculo_PEP_C PF04513.7 gi|284162590|ref|YP_003401213.1| - 0.04 13.7 0.6 0.12 12.2 0.1 1.9 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Phage_tail_S PF05069.8 gi|284162592|ref|YP_003401215.1| - 6.5e-10 38.9 0.0 9.7e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 Phage virion morphogenesis family HK97-gp10_like PF04883.7 gi|284162592|ref|YP_003401215.1| - 5.8e-07 30.3 0.0 3.1e-06 28.0 0.0 2.0 2 1 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component EFP_N PF08207.7 gi|284162593|ref|YP_003401216.1| - 0.12 12.2 0.2 1 9.2 0.0 2.2 2 0 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain DUF4184 PF13803.1 gi|284162594|ref|YP_003401217.1| - 0.056 12.7 0.0 0.056 12.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4184) DUF2198 PF09964.4 gi|284162595|ref|YP_003401218.1| - 0.023 14.4 0.4 0.024 14.3 0.3 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2198) DUF1640 PF07798.6 gi|284162597|ref|YP_003401220.1| - 0.005 16.9 0.1 0.0058 16.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1640) AAA_13 PF13166.1 gi|284162597|ref|YP_003401220.1| - 0.018 13.4 0.1 0.02 13.4 0.1 1.0 1 0 0 1 1 1 0 AAA domain INT_SG_DDX_CT_C PF15300.1 gi|284162597|ref|YP_003401220.1| - 0.045 13.2 0.4 1.6 8.2 0.0 2.3 1 1 1 2 2 2 0 INTS6/SAGE1/DDX26B/CT45 C-terminus DUF4200 PF13863.1 gi|284162597|ref|YP_003401220.1| - 0.064 13.2 0.1 0.076 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) Spore_III_AB PF09548.5 gi|284162597|ref|YP_003401220.1| - 0.077 12.7 0.4 0.089 12.5 0.3 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) DASH_Dad3 PF08656.5 gi|284162597|ref|YP_003401220.1| - 0.087 12.5 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 DASH complex subunit Dad3 DUF2453 PF10507.4 gi|284162597|ref|YP_003401220.1| - 0.12 12.2 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2453) Phage_capsid PF05065.8 gi|284162599|ref|YP_003401222.1| - 1e-20 74.1 0.5 1.2e-20 73.8 0.3 1.0 1 0 0 1 1 1 1 Phage capsid family Linocin_M18 PF04454.7 gi|284162599|ref|YP_003401222.1| - 1.8e-14 53.2 1.1 2.3e-14 52.9 0.7 1.0 1 0 0 1 1 1 1 Encapsulating protein for peroxidase DUF2190 PF09956.4 gi|284162600|ref|YP_003401223.1| - 5.7e-08 32.4 12.3 2.6e-05 23.9 8.5 3.0 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2190) HupF_HypC PF01455.13 gi|284162600|ref|YP_003401223.1| - 0.25 11.3 2.0 3 7.8 0.0 2.3 1 1 0 2 2 2 0 HupF/HypC family Peptidase_M23 PF01551.17 gi|284162600|ref|YP_003401223.1| - 1.7 8.7 6.9 0.78 9.8 0.2 2.7 1 1 2 3 3 3 0 Peptidase family M23 Peptidase_U35 PF04586.12 gi|284162601|ref|YP_003401224.1| - 3.9e-19 69.2 0.6 7.3e-19 68.3 0.0 1.7 2 0 0 2 2 2 1 Caudovirus prohead protease Peptidase_U35_2 PF14550.1 gi|284162601|ref|YP_003401224.1| - 7.1e-05 22.4 0.1 0.00017 21.2 0.1 1.6 1 0 0 1 1 1 1 Putative phage protease XkdF bZIP_2 PF07716.10 gi|284162601|ref|YP_003401224.1| - 0.0003 20.5 6.6 0.0003 20.5 4.6 2.7 3 0 0 3 3 3 1 Basic region leucine zipper bZIP_1 PF00170.16 gi|284162601|ref|YP_003401224.1| - 0.00035 20.4 8.8 0.00035 20.4 6.1 2.4 2 1 1 3 3 3 1 bZIP transcription factor HAP1_N PF04849.8 gi|284162601|ref|YP_003401224.1| - 0.0013 17.7 8.3 0.0022 17.0 5.8 1.4 1 0 0 1 1 1 1 HAP1 N-terminal conserved region DUF1875 PF08961.5 gi|284162601|ref|YP_003401224.1| - 0.0091 15.3 2.9 0.017 14.4 2.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1875) CBF_beta PF02312.12 gi|284162601|ref|YP_003401224.1| - 0.019 14.5 0.8 0.036 13.6 0.5 1.4 1 0 0 1 1 1 0 Core binding factor beta subunit AKNA PF12443.3 gi|284162601|ref|YP_003401224.1| - 0.044 13.8 2.0 0.12 12.3 1.4 1.8 1 0 0 1 1 1 0 AT-hook-containing transcription factor DUF972 PF06156.8 gi|284162601|ref|YP_003401224.1| - 0.053 13.8 10.4 0.1 12.9 6.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF972) GrpE PF01025.14 gi|284162601|ref|YP_003401224.1| - 0.062 12.8 11.3 0.12 11.8 7.8 1.4 1 0 0 1 1 1 0 GrpE ADIP PF11559.3 gi|284162601|ref|YP_003401224.1| - 0.12 12.2 9.4 0.23 11.3 6.5 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Ax_dynein_light PF10211.4 gi|284162601|ref|YP_003401224.1| - 0.19 11.5 11.9 0.33 10.7 8.2 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain CASP_C PF08172.7 gi|284162601|ref|YP_003401224.1| - 0.54 9.2 5.9 0.8 8.6 4.1 1.2 1 0 0 1 1 1 0 CASP C terminal V_ATPase_I PF01496.14 gi|284162601|ref|YP_003401224.1| - 0.81 7.4 6.5 1.1 7.0 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|284162601|ref|YP_003401224.1| - 4.8 6.7 13.9 8.9 5.8 9.6 1.3 1 0 0 1 1 1 0 IncA protein UPF0242 PF06785.6 gi|284162601|ref|YP_003401224.1| - 5 5.7 9.3 7.7 5.0 6.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) Peptidase_S24 PF00717.18 gi|284162602|ref|YP_003401225.1| - 0.12 12.0 0.2 0.2 11.3 0.1 1.3 1 0 0 1 1 1 0 Peptidase S24-like Phage_Mu_F PF04233.9 gi|284162603|ref|YP_003401226.1| - 8e-21 74.6 1.2 8e-21 74.6 0.8 2.2 3 0 0 3 3 3 1 Phage Mu protein F like protein FliG_M PF14841.1 gi|284162603|ref|YP_003401226.1| - 0.0037 17.2 0.5 0.0037 17.2 0.4 3.1 3 1 0 3 3 3 1 FliG middle domain RPAP3_C PF13877.1 gi|284162603|ref|YP_003401226.1| - 0.033 14.1 0.2 1.1 9.2 0.0 3.0 3 0 0 3 3 3 0 Potential Monad-binding region of RPAP3 HK97-gp10_like PF04883.7 gi|284162603|ref|YP_003401226.1| - 1.9 9.4 10.8 1e+02 3.9 1.3 4.5 3 1 0 3 3 3 0 Bacteriophage HK97-gp10, putative tail-component Phage_portal PF04860.7 gi|284162604|ref|YP_003401227.1| - 2.7e-18 65.7 0.9 3.8e-18 65.2 0.6 1.2 1 0 0 1 1 1 1 Phage portal protein UPF0175 PF03683.8 gi|284162604|ref|YP_003401227.1| - 0.00055 19.3 0.1 0.011 15.1 0.0 2.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) TPD52 PF04201.10 gi|284162604|ref|YP_003401227.1| - 0.029 14.0 0.3 1.5 8.5 0.0 2.4 2 0 0 2 2 2 0 Tumour protein D52 family HlyIII PF03006.15 gi|284162605|ref|YP_003401228.1| - 0.13 11.6 7.6 0.46 9.8 5.3 1.8 1 1 0 1 1 1 0 Haemolysin-III related 7TMR-DISM_7TM PF07695.6 gi|284162605|ref|YP_003401228.1| - 0.54 9.8 10.9 0.7 9.5 7.5 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling PHO4 PF01384.15 gi|284162605|ref|YP_003401228.1| - 0.57 8.7 3.4 0.47 9.0 1.5 1.4 1 1 1 2 2 2 0 Phosphate transporter family Chromate_transp PF02417.10 gi|284162605|ref|YP_003401228.1| - 0.92 9.0 8.4 4.6 6.7 5.7 1.8 1 1 0 1 1 1 0 Chromate transporter DUF3493 PF11998.3 gi|284162605|ref|YP_003401228.1| - 1.9 8.4 4.5 0.57 10.1 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3493) DUF2157 PF09925.4 gi|284162605|ref|YP_003401228.1| - 2.1 7.9 6.9 0.36 10.4 0.5 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) RseC_MucC PF04246.7 gi|284162605|ref|YP_003401228.1| - 2.4 7.7 6.0 0.61 9.6 1.6 1.8 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF4181 PF13789.1 gi|284162605|ref|YP_003401228.1| - 6.1 6.8 10.7 0.58 10.1 3.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4181) Rhomboid PF01694.17 gi|284162605|ref|YP_003401228.1| - 9.2 6.2 8.8 57 3.7 6.2 1.9 1 1 0 1 1 1 0 Rhomboid family zinc_ribbon_5 PF13719.1 gi|284162606|ref|YP_003401229.1| - 0.042 13.4 0.0 0.096 12.2 0.0 1.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284162606|ref|YP_003401229.1| - 0.049 13.3 0.1 0.12 12.0 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|284162606|ref|YP_003401229.1| - 0.12 12.4 1.7 1.4 9.0 0.8 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Terminase_6 PF03237.10 gi|284162607|ref|YP_003401230.1| - 4.6e-35 121.1 0.1 5.7e-35 120.8 0.0 1.0 1 0 0 1 1 1 1 Terminase-like family Terminase_1 PF03354.10 gi|284162607|ref|YP_003401230.1| - 4.1e-09 35.3 0.0 2.5e-07 29.5 0.0 2.1 2 0 0 2 2 2 2 Phage Terminase Terminase_3 PF04466.8 gi|284162607|ref|YP_003401230.1| - 0.00031 19.9 0.1 0.00042 19.5 0.1 1.2 1 0 0 1 1 1 1 Phage terminase large subunit Terminase_GpA PF05876.7 gi|284162607|ref|YP_003401230.1| - 0.001 17.4 0.0 0.0017 16.8 0.0 1.2 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) KaiC PF06745.8 gi|284162607|ref|YP_003401230.1| - 0.0096 15.0 0.1 0.093 11.8 0.1 2.1 1 1 0 1 1 1 1 KaiC Helicase_RecD PF05127.9 gi|284162607|ref|YP_003401230.1| - 0.021 14.4 0.0 0.052 13.1 0.0 1.6 1 0 0 1 1 1 0 Helicase GTPase_Cys_C PF12631.2 gi|284162608|ref|YP_003401231.1| - 0.013 15.8 0.1 0.23 11.8 0.0 2.2 1 1 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE TelA PF05816.6 gi|284162608|ref|YP_003401231.1| - 0.025 13.2 0.1 0.036 12.7 0.0 1.2 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) Kdo_hydroxy PF11004.3 gi|284162608|ref|YP_003401231.1| - 0.029 13.3 0.0 0.031 13.2 0.0 1.3 1 0 0 1 1 1 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase DUF3834 PF12916.2 gi|284162608|ref|YP_003401231.1| - 0.036 13.0 0.1 0.051 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) TcdB_N PF12918.2 gi|284162608|ref|YP_003401231.1| - 0.11 12.5 0.2 0.26 11.4 0.2 1.6 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain DUF3523 PF12037.3 gi|284162609|ref|YP_003401232.1| - 0.033 13.1 0.2 0.036 13.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3523) IF2_N PF04760.10 gi|284162609|ref|YP_003401232.1| - 0.045 13.4 0.2 0.091 12.4 0.1 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Seryl_tRNA_N PF02403.17 gi|284162609|ref|YP_003401232.1| - 0.094 12.7 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain HALZ PF02183.13 gi|284162610|ref|YP_003401233.1| - 0.0057 16.3 3.9 0.015 15.0 2.7 1.7 1 0 0 1 1 1 1 Homeobox associated leucine zipper DUF3740 PF12548.3 gi|284162610|ref|YP_003401233.1| - 0.013 15.8 0.9 0.026 14.8 0.6 1.5 1 1 0 1 1 1 0 Sulfatase protein HSA PF07529.8 gi|284162610|ref|YP_003401233.1| - 0.014 15.1 2.5 0.042 13.6 1.7 1.8 1 0 0 1 1 1 0 HSA DUF1338 PF07063.8 gi|284162610|ref|YP_003401233.1| - 0.13 11.3 0.9 0.2 10.7 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) DivIC PF04977.10 gi|284162610|ref|YP_003401233.1| - 0.28 10.6 10.0 0.067 12.6 4.2 1.9 1 1 1 2 2 2 0 Septum formation initiator Transposase_22 PF02994.9 gi|284162610|ref|YP_003401233.1| - 2.2 6.6 14.2 0.42 9.0 7.0 1.6 1 1 1 2 2 2 0 L1 transposable element APG6 PF04111.7 gi|284162610|ref|YP_003401233.1| - 7.1 5.5 14.3 6.1 5.8 9.3 1.3 1 1 0 1 1 1 0 Autophagy protein Apg6 zf-FPG_IleRS PF06827.9 gi|284162611|ref|YP_003401234.1| - 0.0091 15.6 0.3 0.0091 15.6 0.2 1.9 1 1 1 2 2 2 2 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.1 gi|284162611|ref|YP_003401234.1| - 0.025 13.7 0.8 0.029 13.5 0.6 1.1 1 0 0 1 1 1 0 Transcription factor zinc-finger Cys_rich_CPXG PF14255.1 gi|284162611|ref|YP_003401234.1| - 0.047 13.5 1.2 0.068 13.0 0.9 1.2 1 0 0 1 1 1 0 Cysteine-rich CPXCG Zn-ribbon_8 PF09723.5 gi|284162612|ref|YP_003401235.1| - 0.00053 19.8 1.7 0.002 18.0 1.2 1.9 1 1 0 1 1 1 1 Zinc ribbon domain zf-C2H2 PF00096.21 gi|284162612|ref|YP_003401235.1| - 0.0029 17.8 6.1 0.12 12.7 0.5 2.5 2 0 0 2 2 2 2 Zinc finger, C2H2 type zinc-ribbons_6 PF07191.7 gi|284162612|ref|YP_003401235.1| - 0.016 15.0 2.4 0.27 11.0 1.7 2.1 1 1 0 1 1 1 0 zinc-ribbons Ribosomal_L37ae PF01780.14 gi|284162612|ref|YP_003401235.1| - 0.03 14.1 0.1 0.03 14.1 0.1 1.6 2 0 0 2 2 2 0 Ribosomal L37ae protein family zf-C2H2_4 PF13894.1 gi|284162612|ref|YP_003401235.1| - 0.032 14.5 8.0 0.14 12.5 0.7 2.5 2 1 0 2 2 2 0 C2H2-type zinc finger zf-Di19 PF05605.7 gi|284162612|ref|YP_003401235.1| - 0.044 13.8 8.1 0.09 12.9 5.6 1.5 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_6 PF13912.1 gi|284162612|ref|YP_003401235.1| - 0.085 12.7 0.7 0.8 9.6 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.1 gi|284162612|ref|YP_003401235.1| - 0.086 12.0 4.1 0.5 9.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|284162612|ref|YP_003401235.1| - 0.096 12.3 2.2 0.25 11.0 1.5 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-P11 PF03854.9 gi|284162612|ref|YP_003401235.1| - 0.11 11.9 4.9 0.13 11.7 1.5 2.3 1 1 0 1 1 1 0 P-11 zinc finger zf-H2C2_2 PF13465.1 gi|284162612|ref|YP_003401235.1| - 0.17 12.2 5.4 0.93 9.9 0.5 2.4 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.2 gi|284162612|ref|YP_003401235.1| - 0.22 11.3 5.8 0.98 9.2 4.0 1.9 1 1 0 1 1 1 0 Double zinc ribbon DUF329 PF03884.9 gi|284162612|ref|YP_003401235.1| - 0.88 9.1 4.1 2.1 7.9 0.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF329) TF_Zn_Ribbon PF08271.7 gi|284162612|ref|YP_003401235.1| - 2.3 7.5 5.3 11 5.4 3.5 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|284162612|ref|YP_003401235.1| - 2.3 7.7 6.6 1.4 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|284162612|ref|YP_003401235.1| - 5.6 6.7 8.6 3.2 7.5 1.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1876 PF08962.6 gi|284162613|ref|YP_003401236.1| - 0.02 14.6 0.3 0.056 13.2 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1876) DUF1822 PF08852.6 gi|284162616|ref|YP_003401239.1| - 0.14 10.9 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) RNase_H_2 PF13482.1 gi|284162617|ref|YP_003401240.1| - 1.7e-10 40.9 0.2 1.1e-09 38.2 0.1 2.0 1 1 0 1 1 1 1 RNase_H superfamily RNase_T PF00929.19 gi|284162617|ref|YP_003401240.1| - 0.00012 22.4 0.2 0.0098 16.1 0.1 2.3 1 1 0 1 1 1 1 Exonuclease DNA_pol_B_exo2 PF10108.4 gi|284162617|ref|YP_003401240.1| - 0.0021 17.6 0.0 0.005 16.3 0.0 1.6 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.14 gi|284162617|ref|YP_003401240.1| - 0.0043 15.9 0.4 0.022 13.6 0.3 1.9 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain Fibritin_C PF07921.7 gi|284162619|ref|YP_003401242.1| - 0.076 12.9 0.2 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Fibritin C-terminal region AF0941-like PF14591.1 gi|284162620|ref|YP_003401243.1| - 0.0021 18.0 0.0 0.0039 17.2 0.0 1.4 1 1 0 1 1 1 1 AF0941-like UPF0175 PF03683.8 gi|284162620|ref|YP_003401243.1| - 0.0057 16.0 0.1 0.018 14.5 0.0 1.8 2 1 0 2 2 2 1 Uncharacterised protein family (UPF0175) DUF3368 PF11848.3 gi|284162620|ref|YP_003401243.1| - 0.013 15.0 0.1 1.6 8.3 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3368) Phage_prot_Gp6 PF05133.9 gi|284162620|ref|YP_003401243.1| - 0.051 12.1 0.0 0.054 12.0 0.0 1.0 1 0 0 1 1 1 0 Phage portal protein, SPP1 Gp6-like DUF1697 PF08002.6 gi|284162621|ref|YP_003401244.1| - 0.12 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1697) Pox_RNA_Pol_19 PF05320.7 gi|284162622|ref|YP_003401245.1| - 0.018 14.7 0.0 0.022 14.5 0.0 1.1 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase 19 kDa subunit Msg2_C PF12373.3 gi|284162622|ref|YP_003401245.1| - 0.02 14.1 0.2 0.047 12.9 0.1 1.7 2 0 0 2 2 2 0 Major surface glycoprotein 2 C terminal RHH_2 PF03693.9 gi|284162622|ref|YP_003401245.1| - 0.053 13.6 0.2 0.078 13.1 0.1 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0156) RHH_1 PF01402.16 gi|284162622|ref|YP_003401245.1| - 0.082 12.8 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family SDH_sah PF01972.11 gi|284162625|ref|YP_003401248.1| - 1.6e-19 69.8 0.3 5.7e-19 67.9 0.2 1.7 1 1 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|284162625|ref|YP_003401248.1| - 0.0004 20.0 0.1 0.001 18.7 0.0 1.7 2 0 0 2 2 2 1 Clp protease CcdA PF07362.7 gi|284162627|ref|YP_003401250.1| - 1.1e-09 37.9 0.2 1.2e-09 37.8 0.2 1.0 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_3 PF12651.2 gi|284162627|ref|YP_003401250.1| - 0.0014 18.2 1.8 0.0065 16.1 1.3 1.9 1 1 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.16 gi|284162627|ref|YP_003401250.1| - 0.007 16.2 0.6 0.057 13.3 0.4 2.0 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family YbaB_DNA_bd PF02575.11 gi|284162627|ref|YP_003401250.1| - 0.085 12.7 0.1 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family IKKbetaNEMObind PF12179.3 gi|284162627|ref|YP_003401250.1| - 0.091 12.5 0.1 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 I-kappa-kinase-beta NEMO binding domain Usp PF00582.21 gi|284162628|ref|YP_003401251.1| - 5e-29 101.2 4.6 1.8e-18 67.0 0.2 2.2 2 0 0 2 2 2 2 Universal stress protein family NuiA PF07924.6 gi|284162628|ref|YP_003401251.1| - 0.04 13.8 0.1 0.085 12.7 0.0 1.6 2 0 0 2 2 2 0 Nuclease A inhibitor-like protein Radical_SAM PF04055.16 gi|284162629|ref|YP_003401252.1| - 2.3e-09 37.6 0.2 5.8e-09 36.3 0.1 1.6 1 1 1 2 2 2 1 Radical SAM superfamily Rhomboid PF01694.17 gi|284162630|ref|YP_003401253.1| - 9.7e-33 113.2 13.5 9.7e-33 113.2 9.4 1.8 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|284162630|ref|YP_003401253.1| - 2.7e-09 37.2 1.4 2.7e-09 37.2 1.0 2.1 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) DUF1270 PF06900.6 gi|284162630|ref|YP_003401253.1| - 0.13 12.4 0.6 0.13 12.4 0.4 3.6 4 1 0 4 4 4 0 Protein of unknown function (DUF1270) Biotin_lipoyl PF00364.17 gi|284162631|ref|YP_003401254.1| - 5e-21 74.1 7.8 5e-21 74.1 5.4 2.4 2 1 1 3 3 3 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|284162631|ref|YP_003401254.1| - 3.9e-14 52.0 11.6 1.3e-07 31.1 0.2 3.2 2 1 2 4 4 4 2 Biotin-lipoyl like HlyD_3 PF13437.1 gi|284162631|ref|YP_003401254.1| - 1.9e-07 31.3 0.9 0.004 17.4 0.2 2.5 2 0 0 2 2 2 2 HlyD family secretion protein HlyD PF00529.15 gi|284162631|ref|YP_003401254.1| - 3.3e-07 29.9 5.1 0.0036 16.6 0.1 2.2 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|284162631|ref|YP_003401254.1| - 1.9e-05 24.0 8.8 0.0038 16.4 0.4 2.6 1 1 1 3 3 3 2 HlyD family secretion protein DUF2118 PF09891.4 gi|284162631|ref|YP_003401254.1| - 3.4e-05 23.5 5.1 0.0007 19.3 1.7 2.2 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2118) QRPTase_N PF02749.11 gi|284162631|ref|YP_003401254.1| - 0.00052 19.7 0.3 0.11 12.3 0.0 2.6 2 1 1 3 3 3 1 Quinolinate phosphoribosyl transferase, N-terminal domain RnfC_N PF13375.1 gi|284162631|ref|YP_003401254.1| - 0.001 18.7 4.5 0.0062 16.2 1.3 2.3 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain PYNP_C PF07831.8 gi|284162631|ref|YP_003401254.1| - 0.0034 16.7 0.9 1.7 8.1 0.0 2.7 1 1 1 2 2 2 2 Pyrimidine nucleoside phosphorylase C-terminal domain PTS_EIIA_1 PF00358.15 gi|284162631|ref|YP_003401254.1| - 0.016 14.7 0.7 0.53 9.8 0.1 2.5 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_H PF01597.14 gi|284162631|ref|YP_003401254.1| - 0.022 14.4 3.2 0.033 13.8 2.2 1.5 1 0 0 1 1 1 0 Glycine cleavage H-protein Peptidase_M23 PF01551.17 gi|284162631|ref|YP_003401254.1| - 0.022 14.7 3.7 0.17 11.9 2.5 3.1 1 1 0 1 1 1 0 Peptidase family M23 NQRA PF05896.6 gi|284162631|ref|YP_003401254.1| - 0.023 13.8 4.3 0.077 12.1 3.0 1.8 1 1 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PASTA PF03793.14 gi|284162631|ref|YP_003401254.1| - 0.074 12.7 3.7 0.21 11.2 0.4 2.4 1 1 1 2 2 2 0 PASTA domain PAXIP1_C PF15364.1 gi|284162631|ref|YP_003401254.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 PAXIP1-associated-protein-1 C term PTIP binding protein Peptidase_S24 PF00717.18 gi|284162631|ref|YP_003401254.1| - 0.85 9.3 4.3 3.1 7.4 0.8 2.7 2 1 0 2 2 2 0 Peptidase S24-like GHMP_kinases_N PF00288.21 gi|284162633|ref|YP_003401256.1| - 1.6e-08 34.4 0.4 3.1e-08 33.5 0.3 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain TIP49 PF06068.8 gi|284162634|ref|YP_003401257.1| - 0.005 15.5 1.8 0.0068 15.1 0.7 1.4 1 1 1 2 2 2 1 TIP49 C-terminus NAD_kinase PF01513.16 gi|284162635|ref|YP_003401258.1| - 2.5e-54 183.9 0.1 3.1e-54 183.6 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|284162635|ref|YP_003401258.1| - 9.3e-06 25.1 0.0 1.9e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain SNO PF01174.14 gi|284162635|ref|YP_003401258.1| - 0.058 13.0 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Inositol_P PF00459.20 gi|284162636|ref|YP_003401259.1| - 3e-24 85.7 0.0 6.6e-23 81.3 0.0 2.0 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|284162636|ref|YP_003401259.1| - 4.1e-07 29.1 0.2 0.00026 19.9 0.0 2.1 2 0 0 2 2 2 2 Fructose-1-6-bisphosphatase UPF0147 PF03685.8 gi|284162637|ref|YP_003401260.1| - 2.4e-32 110.6 2.0 2.7e-32 110.4 1.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|284162637|ref|YP_003401260.1| - 1.8e-05 24.7 0.2 0.031 14.3 0.1 2.1 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0253) Chlorosome_CsmC PF11098.3 gi|284162637|ref|YP_003401260.1| - 0.073 12.7 0.3 0.092 12.4 0.2 1.1 1 0 0 1 1 1 0 Chlorosome envelope protein C MCP_N PF05581.7 gi|284162637|ref|YP_003401260.1| - 0.11 12.6 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 Vibrio chemotaxis protein N terminus Auto_anti-p27 PF06677.7 gi|284162638|ref|YP_003401261.1| - 5.6e-09 35.6 4.4 1e-08 34.8 3.0 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|284162638|ref|YP_003401261.1| - 0.022 14.4 0.7 0.048 13.3 0.5 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.2 gi|284162638|ref|YP_003401261.1| - 0.031 14.0 0.4 0.061 13.1 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|284162638|ref|YP_003401261.1| - 0.039 13.7 0.3 0.1 12.3 0.2 1.7 1 0 0 1 1 1 0 zinc-ribbons FYDLN_acid PF09538.5 gi|284162638|ref|YP_003401261.1| - 0.044 14.3 1.1 0.055 14.0 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TRM PF02005.11 gi|284162638|ref|YP_003401261.1| - 0.055 12.3 1.0 0.058 12.3 0.7 1.0 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase DUF3130 PF11328.3 gi|284162638|ref|YP_003401261.1| - 0.072 13.1 0.1 0.14 12.1 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3130 Trm112p PF03966.11 gi|284162638|ref|YP_003401261.1| - 0.076 13.3 1.1 0.44 10.9 0.2 2.3 2 0 0 2 2 2 0 Trm112p-like protein zf-RING_4 PF14570.1 gi|284162638|ref|YP_003401261.1| - 0.11 12.1 2.6 0.2 11.2 1.8 1.5 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zinc_ribbon_5 PF13719.1 gi|284162638|ref|YP_003401261.1| - 0.19 11.3 0.1 0.19 11.3 0.1 2.1 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|284162638|ref|YP_003401261.1| - 0.19 11.4 0.1 0.19 11.4 0.1 2.1 3 0 0 3 3 3 0 zinc-ribbon domain T2SE PF00437.15 gi|284162639|ref|YP_003401262.1| - 4.8e-09 35.5 0.7 1.3e-08 34.0 0.5 1.7 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|284162639|ref|YP_003401262.1| - 1e-08 34.6 0.3 1e-08 34.6 0.2 3.0 4 0 0 4 4 2 1 KH domain AAA_17 PF13207.1 gi|284162639|ref|YP_003401262.1| - 2.4e-05 25.1 1.8 0.00029 21.6 0.0 3.3 4 1 0 4 4 3 1 AAA domain AAA_22 PF13401.1 gi|284162639|ref|YP_003401262.1| - 0.00018 21.6 0.0 0.048 13.8 0.0 3.1 3 0 0 3 3 2 1 AAA domain IstB_IS21 PF01695.12 gi|284162639|ref|YP_003401262.1| - 0.00022 20.6 0.0 0.00043 19.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|284162639|ref|YP_003401262.1| - 0.00047 19.8 0.0 0.0013 18.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|284162639|ref|YP_003401262.1| - 0.0012 18.0 0.0 0.003 16.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin KH_2 PF07650.12 gi|284162639|ref|YP_003401262.1| - 0.0015 17.9 2.0 0.0015 17.9 1.4 3.6 3 0 0 3 3 2 1 KH domain AAA PF00004.24 gi|284162639|ref|YP_003401262.1| - 0.0021 18.2 0.6 0.016 15.4 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|284162639|ref|YP_003401262.1| - 0.0022 18.3 0.8 0.0089 16.3 0.0 2.5 4 0 0 4 4 1 1 AAA domain NTPase_1 PF03266.10 gi|284162639|ref|YP_003401262.1| - 0.0031 17.2 0.0 0.032 13.9 0.0 2.7 2 0 0 2 2 2 1 NTPase AAA_23 PF13476.1 gi|284162639|ref|YP_003401262.1| - 0.0043 17.3 0.9 0.049 13.9 0.0 2.6 2 1 0 2 2 1 1 AAA domain AAA_30 PF13604.1 gi|284162639|ref|YP_003401262.1| - 0.005 16.4 0.0 0.033 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|284162639|ref|YP_003401262.1| - 0.0063 16.0 0.0 0.018 14.5 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|284162639|ref|YP_003401262.1| - 0.0069 15.8 0.0 0.027 13.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|284162639|ref|YP_003401262.1| - 0.0069 16.2 0.0 0.019 14.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|284162639|ref|YP_003401262.1| - 0.0072 15.7 0.0 0.02 14.3 0.0 1.8 1 0 0 1 1 1 1 AAA-like domain KH_5 PF13184.1 gi|284162639|ref|YP_003401262.1| - 0.0077 16.0 0.9 0.037 13.8 0.2 2.5 2 0 0 2 2 2 1 NusA-like KH domain ArgK PF03308.11 gi|284162639|ref|YP_003401262.1| - 0.0092 14.7 0.1 0.033 12.9 0.0 1.9 2 0 0 2 2 2 1 ArgK protein MobB PF03205.9 gi|284162639|ref|YP_003401262.1| - 0.011 15.4 0.0 0.038 13.7 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|284162639|ref|YP_003401262.1| - 0.011 14.9 0.2 0.13 11.4 0.0 2.4 3 0 0 3 3 2 0 Chromatin associated protein KTI12 KH_3 PF13014.1 gi|284162639|ref|YP_003401262.1| - 0.015 14.8 1.1 0.048 13.3 0.0 2.5 2 0 0 2 2 1 0 KH domain AAA_16 PF13191.1 gi|284162639|ref|YP_003401262.1| - 0.017 15.0 0.0 0.35 10.8 0.0 2.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.9 gi|284162639|ref|YP_003401262.1| - 0.018 14.7 0.0 0.2 11.4 0.0 2.6 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|284162639|ref|YP_003401262.1| - 0.022 14.6 0.0 0.25 11.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|284162639|ref|YP_003401262.1| - 0.025 14.7 0.0 0.097 12.8 0.0 2.0 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|284162639|ref|YP_003401262.1| - 0.025 14.8 0.0 0.074 13.3 0.0 1.8 1 0 0 1 1 1 0 ABC transporter Mg_chelatase PF01078.16 gi|284162639|ref|YP_003401262.1| - 0.03 13.4 0.6 0.33 10.1 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|284162639|ref|YP_003401262.1| - 0.03 13.9 0.0 0.088 12.3 0.0 1.7 2 1 0 2 2 1 0 AAA domain APS_kinase PF01583.15 gi|284162639|ref|YP_003401262.1| - 0.031 13.9 0.0 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase PPV_E1_C PF00519.12 gi|284162639|ref|YP_003401262.1| - 0.042 12.4 0.0 0.063 11.8 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase ATP_bind_1 PF03029.12 gi|284162639|ref|YP_003401262.1| - 0.043 13.3 0.0 0.095 12.2 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|284162639|ref|YP_003401262.1| - 0.095 12.2 0.2 0.4 10.2 0.0 2.2 3 0 0 3 3 2 0 AAA domain DUF563 PF04577.9 gi|284162639|ref|YP_003401262.1| - 0.1 12.4 0.3 4 7.2 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF563) Mut7-C PF01927.11 gi|284162639|ref|YP_003401262.1| - 0.14 12.1 0.1 0.71 9.8 0.0 2.1 2 0 0 2 2 2 0 Mut7-C RNAse domain NACHT PF05729.7 gi|284162639|ref|YP_003401262.1| - 0.15 11.6 0.0 0.36 10.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF1119 PF06550.6 gi|284162640|ref|YP_003401263.1| - 3e-55 187.3 30.1 6.8e-53 179.6 20.9 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|284162640|ref|YP_003401263.1| - 8.9e-07 28.6 14.4 2e-06 27.5 10.0 1.6 1 1 0 1 1 1 1 Signal peptide peptidase PMP1_2 PF08114.6 gi|284162640|ref|YP_003401263.1| - 1.9 8.0 6.7 0.19 11.2 0.6 2.5 2 0 0 2 2 2 0 ATPase proteolipid family PDT PF00800.13 gi|284162642|ref|YP_003401265.1| - 5.6e-56 188.9 0.0 8.7e-56 188.3 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydratase PDH PF02153.12 gi|284162642|ref|YP_003401265.1| - 2.5e-26 92.1 0.0 5.1e-26 91.1 0.0 1.5 1 1 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.16 gi|284162642|ref|YP_003401265.1| - 3.2e-10 39.9 2.1 3.2e-10 39.9 1.5 2.2 2 0 0 2 2 2 1 Chorismate mutase type II ACT PF01842.20 gi|284162642|ref|YP_003401265.1| - 2.9e-09 36.2 0.0 2.9e-08 32.9 0.0 2.4 2 0 0 2 2 2 1 ACT domain ApbA PF02558.11 gi|284162642|ref|YP_003401265.1| - 0.0026 17.1 0.6 0.024 14.0 0.0 2.2 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|284162642|ref|YP_003401265.1| - 0.0038 17.6 0.1 0.021 15.2 0.1 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|284162642|ref|YP_003401265.1| - 0.019 14.7 0.1 0.45 10.3 0.0 3.1 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase PRK PF00485.13 gi|284162643|ref|YP_003401266.1| - 5.3e-48 163.1 0.2 7.8e-48 162.6 0.1 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|284162643|ref|YP_003401266.1| - 4.3e-05 23.8 1.3 9.2e-05 22.7 0.6 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284162643|ref|YP_003401266.1| - 5.8e-05 23.9 4.9 0.00031 21.5 3.1 2.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|284162643|ref|YP_003401266.1| - 0.0013 17.8 0.0 0.0022 17.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin UPF0079 PF02367.12 gi|284162643|ref|YP_003401266.1| - 0.0015 18.1 0.2 0.0044 16.6 0.1 1.8 1 1 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 TIP49 PF06068.8 gi|284162643|ref|YP_003401266.1| - 0.0028 16.4 0.0 0.0041 15.8 0.0 1.2 1 0 0 1 1 1 1 TIP49 C-terminus ABC_tran PF00005.22 gi|284162643|ref|YP_003401266.1| - 0.0072 16.6 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter NB-ARC PF00931.17 gi|284162643|ref|YP_003401266.1| - 0.0073 15.1 0.3 0.012 14.4 0.2 1.3 1 0 0 1 1 1 1 NB-ARC domain APS_kinase PF01583.15 gi|284162643|ref|YP_003401266.1| - 0.048 13.3 0.0 0.084 12.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase KAP_NTPase PF07693.9 gi|284162643|ref|YP_003401266.1| - 0.083 11.8 0.0 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain T2SE PF00437.15 gi|284162643|ref|YP_003401266.1| - 0.087 11.7 0.1 0.31 9.8 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|284162643|ref|YP_003401266.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|284162643|ref|YP_003401266.1| - 0.12 12.0 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|284162643|ref|YP_003401266.1| - 0.13 11.8 0.1 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|284162643|ref|YP_003401266.1| - 0.15 11.6 0.4 0.29 10.7 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|284162643|ref|YP_003401266.1| - 0.17 12.1 5.0 0.3 11.3 3.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|284162643|ref|YP_003401266.1| - 0.73 9.7 14.3 1.2e+02 2.4 9.9 3.0 1 1 0 1 1 1 0 AAA domain HycI PF01750.13 gi|284162644|ref|YP_003401267.1| - 1.4e-17 63.4 1.7 2.3e-17 62.7 1.1 1.4 1 1 0 1 1 1 1 Hydrogenase maturation protease Ribosomal_S5 PF00333.15 gi|284162644|ref|YP_003401267.1| - 0.0014 18.3 0.7 0.072 12.8 0.0 2.5 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain HTH_CodY PF08222.6 gi|284162644|ref|YP_003401267.1| - 0.037 13.3 0.1 0.076 12.3 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HMA PF00403.21 gi|284162644|ref|YP_003401267.1| - 3.9 7.7 5.7 9.3 6.4 1.2 2.5 2 1 0 2 2 2 0 Heavy-metal-associated domain DUF2250 PF10007.4 gi|284162645|ref|YP_003401268.1| - 1.2e-31 108.4 1.9 1.7e-31 107.9 1.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|284162645|ref|YP_003401268.1| - 0.00038 20.0 0.1 0.00054 19.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.2 gi|284162645|ref|YP_003401268.1| - 0.0013 18.3 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|284162645|ref|YP_003401268.1| - 0.002 17.8 0.3 0.0053 16.4 0.2 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|284162645|ref|YP_003401268.1| - 0.0068 16.5 0.1 0.011 15.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator Phage_rep_org_N PF09681.5 gi|284162645|ref|YP_003401268.1| - 0.0088 15.6 0.2 0.018 14.5 0.1 1.6 2 0 0 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_9 PF08221.6 gi|284162645|ref|YP_003401268.1| - 0.009 15.8 0.2 0.018 14.9 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR PF01047.17 gi|284162645|ref|YP_003401268.1| - 0.012 15.3 0.1 0.025 14.2 0.1 1.6 1 0 0 1 1 1 0 MarR family GntR PF00392.16 gi|284162645|ref|YP_003401268.1| - 0.019 14.4 0.1 0.043 13.2 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|284162645|ref|YP_003401268.1| - 0.072 12.4 0.1 0.13 11.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NiFeSe_Hases PF00374.14 gi|284162646|ref|YP_003401269.1| - 2.3e-28 99.2 0.1 7.7e-15 54.6 0.0 3.0 2 1 0 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|284162647|ref|YP_003401270.1| - 4.8e-30 103.8 0.1 1.1e-29 102.6 0.1 1.7 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit FlpD PF02662.11 gi|284162648|ref|YP_003401271.1| - 6.6e-51 171.1 0.0 7.4e-51 171.0 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit CCG PF02754.11 gi|284162649|ref|YP_003401272.1| - 2.2e-32 110.8 1.0 1.5e-19 69.7 0.1 2.5 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|284162650|ref|YP_003401273.1| - 6.1e-11 42.1 4.7 1.1e-10 41.4 3.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284162650|ref|YP_003401273.1| - 1.5e-09 38.0 4.0 2.7e-09 37.2 2.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284162650|ref|YP_003401273.1| - 1.4e-08 35.0 2.3 0.0012 19.1 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284162650|ref|YP_003401273.1| - 9.7e-07 28.6 9.2 0.0076 16.4 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284162650|ref|YP_003401273.1| - 3.3e-06 27.2 9.8 6e-05 23.2 7.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162650|ref|YP_003401273.1| - 3.9e-05 23.3 12.2 0.0088 15.9 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|284162650|ref|YP_003401273.1| - 4.3e-05 22.9 16.2 0.006 16.1 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284162650|ref|YP_003401273.1| - 4.6e-05 23.7 12.2 0.0013 19.0 9.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162650|ref|YP_003401273.1| - 0.0001 22.0 12.4 0.013 15.2 10.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284162650|ref|YP_003401273.1| - 0.0018 18.0 15.0 0.12 12.3 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284162650|ref|YP_003401273.1| - 0.012 16.2 12.8 0.52 11.1 9.8 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|284162650|ref|YP_003401273.1| - 0.11 12.4 14.6 3.6 7.5 2.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284162650|ref|YP_003401273.1| - 0.16 12.5 17.8 1.2 9.8 3.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|284162650|ref|YP_003401273.1| - 0.19 12.2 7.2 3.4 8.3 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|284162651|ref|YP_003401274.1| - 2.7e-22 78.8 27.2 1.2e-11 44.7 8.0 3.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284162651|ref|YP_003401274.1| - 1.5e-21 75.0 48.0 2.2e-08 33.3 2.4 6.0 6 0 0 6 6 5 4 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|284162651|ref|YP_003401274.1| - 7.8e-17 61.8 0.0 1.5e-13 51.1 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_9 PF13187.1 gi|284162651|ref|YP_003401274.1| - 1.8e-16 60.1 28.3 1.6e-08 34.6 3.3 3.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162651|ref|YP_003401274.1| - 1.1e-13 50.6 30.5 4.5e-08 32.7 6.1 4.6 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284162651|ref|YP_003401274.1| - 1.2e-13 50.2 52.9 2.2e-05 24.0 1.4 6.5 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284162651|ref|YP_003401274.1| - 2e-12 47.6 20.5 0.00055 20.6 0.3 5.5 5 0 0 5 5 5 3 4Fe-4S double cluster binding domain DAO PF01266.19 gi|284162651|ref|YP_003401274.1| - 2.1e-11 43.3 0.2 9.9e-08 31.2 0.1 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase Fer4_2 PF12797.2 gi|284162651|ref|YP_003401274.1| - 3.4e-10 39.2 47.2 0.0002 21.1 2.4 6.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_15 PF13459.1 gi|284162651|ref|YP_003401274.1| - 5e-10 39.8 18.7 0.00043 20.7 0.6 4.6 4 0 0 4 4 4 3 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|284162651|ref|YP_003401274.1| - 1.2e-09 37.8 26.8 1.6e-06 27.8 7.5 6.3 7 1 2 9 9 7 4 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|284162651|ref|YP_003401274.1| - 4.4e-09 35.9 0.0 7.5e-09 35.1 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_17 PF13534.1 gi|284162651|ref|YP_003401274.1| - 6.1e-08 32.8 29.3 0.0065 16.7 7.4 6.0 4 2 2 6 6 6 4 4Fe-4S dicluster domain HI0933_like PF03486.9 gi|284162651|ref|YP_003401274.1| - 1.7e-07 30.0 0.6 8.5e-06 24.4 0.3 2.2 1 1 1 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|284162651|ref|YP_003401274.1| - 3.4e-07 30.1 0.0 8.8e-07 28.8 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|284162651|ref|YP_003401274.1| - 4.2e-07 29.1 0.4 6.8e-07 28.4 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.1 gi|284162651|ref|YP_003401274.1| - 4.6e-07 29.7 32.6 0.00048 20.0 6.7 4.9 4 1 0 5 5 5 2 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|284162651|ref|YP_003401274.1| - 7.2e-06 26.3 2.3 9.4e-05 22.7 1.1 2.9 3 1 0 3 3 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|284162651|ref|YP_003401274.1| - 8.9e-06 24.8 0.1 1.8e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Fer4_4 PF12800.2 gi|284162651|ref|YP_003401274.1| - 0.0001 22.3 12.2 0.00031 20.8 1.3 6.3 6 1 0 6 6 4 3 4Fe-4S binding domain Pyr_redox_3 PF13738.1 gi|284162651|ref|YP_003401274.1| - 0.0002 21.4 0.8 0.017 15.1 0.1 2.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|284162651|ref|YP_003401274.1| - 0.00042 19.4 0.0 0.00077 18.6 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|284162651|ref|YP_003401274.1| - 0.0045 16.0 0.2 0.01 14.8 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_3 PF12798.2 gi|284162651|ref|YP_003401274.1| - 0.0059 17.0 60.2 0.1 13.2 0.9 6.3 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284162651|ref|YP_003401274.1| - 0.0065 16.8 1.0 0.0065 16.8 0.7 5.5 5 1 1 6 6 4 2 4Fe-4S dicluster domain 3HCDH_N PF02737.13 gi|284162651|ref|YP_003401274.1| - 0.038 13.6 0.1 0.083 12.5 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Titin_Z PF09042.6 gi|284162651|ref|YP_003401274.1| - 0.048 13.2 1.4 9.9 5.8 0.0 2.8 2 0 0 2 2 2 0 Titin Z Lycopene_cycl PF05834.7 gi|284162651|ref|YP_003401274.1| - 0.063 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|284162651|ref|YP_003401274.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Trp_halogenase PF04820.9 gi|284162651|ref|YP_003401274.1| - 0.18 10.3 0.4 0.34 9.4 0.3 1.4 1 0 0 1 1 1 0 Tryptophan halogenase Fer4_13 PF13370.1 gi|284162651|ref|YP_003401274.1| - 0.74 10.2 32.2 0.094 13.1 1.1 4.6 4 0 0 4 4 4 0 4Fe-4S single cluster domain tRNA_int_endo PF01974.12 gi|284162652|ref|YP_003401275.1| - 9e-29 99.1 6.0 7.1e-24 83.4 0.6 3.5 3 0 0 3 3 3 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|284162652|ref|YP_003401275.1| - 2.7e-14 52.4 1.2 3.6e-10 39.2 0.2 2.7 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|284162652|ref|YP_003401275.1| - 3.1e-06 26.5 0.1 0.0064 15.9 0.0 2.4 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term HTH_45 PF14947.1 gi|284162653|ref|YP_003401276.1| - 0.00064 19.4 0.5 0.0013 18.5 0.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2250 PF10007.4 gi|284162653|ref|YP_003401276.1| - 0.011 15.6 0.3 0.03 14.2 0.1 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|284162653|ref|YP_003401276.1| - 0.018 15.1 0.0 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF4364 PF14277.1 gi|284162653|ref|YP_003401276.1| - 0.021 14.4 0.1 0.029 13.9 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) AAA_16 PF13191.1 gi|284162653|ref|YP_003401276.1| - 0.11 12.4 0.0 0.15 12.0 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain Fe_dep_repress PF01325.14 gi|284162653|ref|YP_003401276.1| - 0.21 11.5 1.4 0.32 10.9 0.2 1.9 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain Peptidase_M20 PF01546.23 gi|284162654|ref|YP_003401277.1| - 1.4e-26 93.2 0.0 1.8e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|284162654|ref|YP_003401277.1| - 2.2e-13 49.8 0.0 4.4e-13 48.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain LigT_PEase PF02834.11 gi|284162655|ref|YP_003401278.1| - 3.2e-31 107.1 0.1 1.1e-17 63.7 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|284162655|ref|YP_003401278.1| - 1.3e-15 57.7 0.0 1.6e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.1 gi|284162655|ref|YP_003401278.1| - 3.6e-14 52.7 0.0 4.6e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily HVSL PF09749.4 gi|284162655|ref|YP_003401278.1| - 0.00038 19.5 0.0 0.00048 19.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein Gp-FAR-1 PF05823.7 gi|284162655|ref|YP_003401278.1| - 0.00055 19.9 3.1 0.032 14.1 0.1 2.1 2 0 0 2 2 2 2 Nematode fatty acid retinoid binding protein (Gp-FAR-1) B5 PF03484.10 gi|284162656|ref|YP_003401279.1| - 1.4e-19 69.7 3.8 2.2e-17 62.6 0.5 3.1 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|284162656|ref|YP_003401279.1| - 3.3e-14 52.7 0.0 5.4e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|284162656|ref|YP_003401279.1| - 0.0046 16.1 0.0 0.034 13.3 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) DUF433 PF04255.9 gi|284162656|ref|YP_003401279.1| - 0.14 11.6 1.0 5.4 6.4 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF433) PALP PF00291.20 gi|284162657|ref|YP_003401280.1| - 1.6e-37 129.3 0.0 1.9e-37 129.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme polyprenyl_synt PF00348.12 gi|284162658|ref|YP_003401281.1| - 9.6e-59 198.3 0.0 1.2e-58 198.0 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase FMN_dh PF01070.13 gi|284162659|ref|YP_003401282.1| - 6.2e-28 97.6 0.0 1.3e-17 63.7 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|284162659|ref|YP_003401282.1| - 4.3e-05 22.5 0.1 0.013 14.4 0.1 2.4 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|284162659|ref|YP_003401282.1| - 0.00021 20.5 1.6 0.00061 19.0 0.3 1.9 2 0 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.12 gi|284162659|ref|YP_003401282.1| - 0.065 12.1 0.1 0.11 11.4 0.1 1.4 1 0 0 1 1 1 0 Conserved region in glutamate synthase AA_kinase PF00696.23 gi|284162660|ref|YP_003401283.1| - 8.1e-33 113.9 0.1 9.7e-33 113.7 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family PolC_DP2 PF03833.8 gi|284162661|ref|YP_003401284.1| - 0 1390.4 5.0 0 1390.4 3.5 1.6 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 ABC_tran PF00005.22 gi|284162662|ref|YP_003401285.1| - 7.7e-34 116.9 0.0 1e-33 116.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284162662|ref|YP_003401285.1| - 1.8e-15 57.7 2.0 4.9e-14 52.9 1.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284162662|ref|YP_003401285.1| - 1.4e-10 40.8 1.0 4.1e-05 22.8 0.2 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|284162662|ref|YP_003401285.1| - 7.6e-08 31.8 0.1 0.001 18.3 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284162662|ref|YP_003401285.1| - 3.4e-05 24.0 0.3 0.00012 22.2 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|284162662|ref|YP_003401285.1| - 6e-05 22.9 0.1 0.0011 18.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|284162662|ref|YP_003401285.1| - 0.00048 20.9 0.6 0.001 19.8 0.2 2.1 2 1 0 2 2 1 1 AAA domain ABC_ATPase PF09818.4 gi|284162662|ref|YP_003401285.1| - 0.00058 18.5 0.0 0.078 11.5 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|284162662|ref|YP_003401285.1| - 0.00063 19.7 0.1 0.0013 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF3584 PF12128.3 gi|284162662|ref|YP_003401285.1| - 0.0017 15.8 0.1 0.0021 15.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) MobB PF03205.9 gi|284162662|ref|YP_003401285.1| - 0.002 17.8 0.1 0.0058 16.3 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|284162662|ref|YP_003401285.1| - 0.0031 17.2 0.4 1.4 8.5 0.0 2.4 2 0 0 2 2 2 1 NTPase AAA_23 PF13476.1 gi|284162662|ref|YP_003401285.1| - 0.0034 17.7 3.1 0.0062 16.8 2.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|284162662|ref|YP_003401285.1| - 0.0041 15.6 0.6 0.047 12.1 0.1 2.0 1 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|284162662|ref|YP_003401285.1| - 0.0046 16.6 0.4 0.017 14.7 0.1 1.9 2 0 0 2 2 2 1 NACHT domain AAA_29 PF13555.1 gi|284162662|ref|YP_003401285.1| - 0.0058 16.1 0.0 0.01 15.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|284162662|ref|YP_003401285.1| - 0.0068 16.2 0.0 0.16 11.8 0.0 2.6 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|284162662|ref|YP_003401285.1| - 0.015 14.7 0.1 0.2 11.0 0.1 2.0 1 1 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|284162662|ref|YP_003401285.1| - 0.015 14.7 0.0 0.035 13.5 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|284162662|ref|YP_003401285.1| - 0.019 14.5 0.0 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|284162662|ref|YP_003401285.1| - 0.02 14.6 0.4 0.03 13.9 0.3 1.5 1 1 0 1 1 1 0 Archaeal ATPase Thymidylate_kin PF02223.12 gi|284162662|ref|YP_003401285.1| - 0.022 14.1 0.0 0.039 13.3 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase AAA PF00004.24 gi|284162662|ref|YP_003401285.1| - 0.023 14.8 0.2 0.35 11.0 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|284162662|ref|YP_003401285.1| - 0.024 14.0 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|284162662|ref|YP_003401285.1| - 0.025 15.0 0.0 0.059 13.8 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_5 PF07728.9 gi|284162662|ref|YP_003401285.1| - 0.028 14.1 0.0 0.31 10.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|284162662|ref|YP_003401285.1| - 0.028 14.7 0.7 0.066 13.5 0.5 1.9 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|284162662|ref|YP_003401285.1| - 0.03 13.2 0.0 0.051 12.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AFG1_ATPase PF03969.11 gi|284162662|ref|YP_003401285.1| - 0.032 13.0 0.2 0.064 12.0 0.0 1.5 2 0 0 2 2 2 0 AFG1-like ATPase NB-ARC PF00931.17 gi|284162662|ref|YP_003401285.1| - 0.035 12.9 0.7 0.17 10.7 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain ATP_bind_1 PF03029.12 gi|284162662|ref|YP_003401285.1| - 0.038 13.5 0.1 0.1 12.1 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.13 gi|284162662|ref|YP_003401285.1| - 0.055 12.9 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|284162662|ref|YP_003401285.1| - 0.063 12.9 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|284162662|ref|YP_003401285.1| - 0.065 12.6 0.1 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|284162662|ref|YP_003401285.1| - 0.07 12.9 0.1 0.19 11.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain ATP-synt_ab PF00006.20 gi|284162662|ref|YP_003401285.1| - 0.083 12.3 0.0 0.13 11.7 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|284162662|ref|YP_003401285.1| - 0.089 12.3 0.2 0.21 11.1 0.1 1.6 2 0 0 2 2 1 0 AAA domain Flavin_Reduct PF01613.13 gi|284162663|ref|YP_003401286.1| - 2.4e-26 92.4 0.0 2.9e-26 92.1 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain OCD_Mu_crystall PF02423.10 gi|284162664|ref|YP_003401287.1| - 1e-113 379.2 0.0 1.2e-113 379.0 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.17 gi|284162664|ref|YP_003401287.1| - 0.086 13.3 0.0 0.22 12.0 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.19 gi|284162665|ref|YP_003401288.1| - 0.00015 21.7 0.2 0.00042 20.3 0.1 1.7 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|284162665|ref|YP_003401288.1| - 0.0015 19.0 0.0 0.0031 18.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|284162665|ref|YP_003401288.1| - 0.011 14.7 0.4 0.26 10.1 0.0 2.1 2 0 0 2 2 2 0 Saccharopine dehydrogenase CoA_binding PF02629.14 gi|284162665|ref|YP_003401288.1| - 0.013 16.0 0.1 0.091 13.2 0.0 2.3 2 0 0 2 2 2 0 CoA binding domain 3HCDH_N PF02737.13 gi|284162665|ref|YP_003401288.1| - 0.015 14.9 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|284162665|ref|YP_003401288.1| - 0.022 15.1 0.0 0.086 13.2 0.0 2.0 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|284162665|ref|YP_003401288.1| - 0.023 14.6 0.1 0.062 13.3 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|284162665|ref|YP_003401288.1| - 0.031 13.6 0.3 0.26 10.6 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF2787 PF10980.3 gi|284162665|ref|YP_003401288.1| - 0.13 12.2 0.0 5.1 7.0 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2787) 2-Hacid_dh_C PF02826.14 gi|284162665|ref|YP_003401288.1| - 0.23 10.5 1.1 0.28 10.2 0.1 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 4HBT PF03061.17 gi|284162666|ref|YP_003401289.1| - 1.8e-13 50.4 0.0 2.7e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|284162666|ref|YP_003401289.1| - 3.5e-05 23.7 0.0 4.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) Arginosuc_synth PF00764.14 gi|284162667|ref|YP_003401290.1| - 2.6e-171 569.9 0.0 3e-171 569.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.12 gi|284162667|ref|YP_003401290.1| - 6e-05 22.0 0.0 9.1e-05 21.4 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|284162667|ref|YP_003401290.1| - 0.00065 19.0 0.0 0.0016 17.7 0.0 1.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|284162667|ref|YP_003401290.1| - 0.0024 17.4 0.0 0.0033 16.9 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase DUF362 PF04015.7 gi|284162667|ref|YP_003401290.1| - 0.016 14.7 0.0 0.039 13.4 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF362) tRNA_Me_trans PF03054.11 gi|284162667|ref|YP_003401290.1| - 0.034 12.6 0.0 0.052 12.1 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_4 PF01902.12 gi|284162667|ref|YP_003401290.1| - 0.038 13.3 0.3 0.58 9.4 0.2 2.3 1 1 0 1 1 1 0 ATP-binding region ArgK PF03308.11 gi|284162667|ref|YP_003401290.1| - 0.041 12.6 0.0 0.07 11.8 0.0 1.3 1 0 0 1 1 1 0 ArgK protein ThiI PF02568.9 gi|284162667|ref|YP_003401290.1| - 0.041 13.3 0.1 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Asp_Glu_race PF01177.17 gi|284162667|ref|YP_003401290.1| - 0.085 12.7 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase MMR_HSR1 PF01926.18 gi|284162668|ref|YP_003401291.1| - 2.1e-16 59.8 0.1 5.6e-16 58.5 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|284162668|ref|YP_003401291.1| - 2.4e-15 56.1 0.3 7.9e-15 54.4 0.2 2.0 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|284162668|ref|YP_003401291.1| - 7.3e-12 44.8 0.0 1.3e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|284162668|ref|YP_003401291.1| - 1.1e-07 32.4 0.0 2.1e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AIG1 PF04548.11 gi|284162668|ref|YP_003401291.1| - 1.9e-05 23.8 0.0 3.3e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 AIG1 family GTP_EFTU PF00009.22 gi|284162668|ref|YP_003401291.1| - 0.00045 19.7 0.1 0.0051 16.2 0.0 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|284162668|ref|YP_003401291.1| - 0.00057 19.1 0.0 0.001 18.3 0.0 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|284162668|ref|YP_003401291.1| - 0.0037 17.1 0.9 0.014 15.1 0.6 1.9 1 1 0 1 1 1 1 Dynamin family Ras PF00071.17 gi|284162668|ref|YP_003401291.1| - 0.0038 16.6 0.0 0.021 14.2 0.0 2.1 2 1 0 2 2 2 1 Ras family ATP_bind_1 PF03029.12 gi|284162668|ref|YP_003401291.1| - 0.0054 16.3 0.3 0.85 9.1 0.0 2.4 1 1 0 2 2 2 1 Conserved hypothetical ATP binding protein DUF258 PF03193.11 gi|284162668|ref|YP_003401291.1| - 0.011 14.9 0.0 0.069 12.3 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF258 PPV_E1_C PF00519.12 gi|284162668|ref|YP_003401291.1| - 0.011 14.3 0.0 0.014 13.9 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase AAA_25 PF13481.1 gi|284162668|ref|YP_003401291.1| - 0.013 14.8 0.0 0.062 12.7 0.0 2.0 1 1 2 3 3 3 0 AAA domain MobB PF03205.9 gi|284162668|ref|YP_003401291.1| - 0.1 12.2 0.1 0.43 10.2 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF4284 PF14112.1 gi|284162668|ref|YP_003401291.1| - 0.11 13.0 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4284) CTP_transf_2 PF01467.21 gi|284162669|ref|YP_003401292.1| - 5.4e-24 85.0 0.2 7.3e-24 84.5 0.1 1.2 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|284162669|ref|YP_003401292.1| - 0.0043 16.6 0.1 0.03 13.9 0.1 2.2 1 1 0 1 1 1 1 FAD synthetase THUMP PF02926.12 gi|284162669|ref|YP_003401292.1| - 0.065 13.1 3.0 0.1 12.5 2.1 1.3 1 0 0 1 1 1 0 THUMP domain Usp PF00582.21 gi|284162670|ref|YP_003401293.1| - 5.6e-12 46.0 1.5 1.7e-08 34.7 0.0 2.4 2 0 0 2 2 2 2 Universal stress protein family FrhB_FdhB_C PF04432.8 gi|284162671|ref|YP_003401294.1| - 1.8e-39 134.7 0.3 1.8e-39 134.7 0.2 2.5 4 0 0 4 4 4 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Fer4_7 PF12838.2 gi|284162671|ref|YP_003401294.1| - 3.5e-19 68.9 39.2 9e-11 41.9 7.4 4.2 2 1 4 6 6 6 5 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284162671|ref|YP_003401294.1| - 3.7e-16 57.9 42.0 7.5e-09 34.8 1.1 5.4 5 1 0 5 5 5 3 4Fe-4S binding domain FrhB_FdhB_N PF04422.8 gi|284162671|ref|YP_003401294.1| - 5.6e-16 58.1 0.0 1.4e-15 56.8 0.0 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_16 PF13484.1 gi|284162671|ref|YP_003401294.1| - 8.8e-15 55.2 20.8 2.7e-08 34.4 3.3 4.3 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|284162671|ref|YP_003401294.1| - 1.6e-12 47.4 29.0 7e-11 42.2 3.7 3.7 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162671|ref|YP_003401294.1| - 4.6e-12 45.1 39.2 0.00011 21.8 1.5 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284162671|ref|YP_003401294.1| - 5.3e-12 45.3 32.6 5.2e-08 32.5 7.3 3.8 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284162671|ref|YP_003401294.1| - 3.4e-10 40.1 21.9 1.4e-05 25.3 2.6 4.3 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284162671|ref|YP_003401294.1| - 7.4e-10 38.2 10.6 6.6e-06 25.7 2.0 4.9 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284162671|ref|YP_003401294.1| - 9.9e-10 37.9 39.9 3.4e-05 23.8 2.0 5.5 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284162671|ref|YP_003401294.1| - 2.5e-08 33.8 30.5 6.4e-07 29.3 5.8 3.9 3 1 2 5 5 4 4 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284162671|ref|YP_003401294.1| - 9.3e-07 29.1 32.4 0.035 14.5 2.5 4.9 5 0 0 5 5 5 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284162671|ref|YP_003401294.1| - 7.1e-06 25.7 12.9 7.1e-06 25.7 8.9 4.9 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284162671|ref|YP_003401294.1| - 3.2e-05 24.3 24.9 0.014 15.8 0.3 4.7 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|284162671|ref|YP_003401294.1| - 0.00023 21.4 19.7 0.00083 19.7 3.2 5.3 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|284162671|ref|YP_003401294.1| - 0.00059 19.6 1.1 0.00059 19.6 0.7 3.5 3 2 1 4 4 4 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|284162671|ref|YP_003401294.1| - 4.6 7.1 18.8 0.91 9.3 0.4 4.2 4 0 0 4 4 3 0 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.1 gi|284162671|ref|YP_003401294.1| - 7.3 7.0 33.3 0.8 10.1 0.8 4.9 5 0 0 5 5 4 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|284162672|ref|YP_003401295.1| - 8.3e-13 47.3 14.3 1.3e-08 34.1 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|284162672|ref|YP_003401295.1| - 6.9e-11 42.3 9.3 1.1e-10 41.7 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162672|ref|YP_003401295.1| - 1.3e-10 40.9 16.0 2.3e-07 30.4 6.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|284162672|ref|YP_003401295.1| - 1.4e-10 40.5 13.7 1.6e-05 24.5 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284162672|ref|YP_003401295.1| - 8.1e-10 38.8 8.9 1.4e-09 38.0 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284162672|ref|YP_003401295.1| - 3.9e-09 37.1 4.1 0.0004 21.0 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|284162672|ref|YP_003401295.1| - 4.3e-08 33.0 1.0 0.0074 16.2 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284162672|ref|YP_003401295.1| - 6e-08 32.4 19.5 3.7e-06 26.7 6.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284162672|ref|YP_003401295.1| - 1.9e-07 31.2 1.2 0.0071 16.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162672|ref|YP_003401295.1| - 3.8e-07 29.6 12.4 0.00055 19.7 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284162672|ref|YP_003401295.1| - 9.5e-06 25.5 11.5 0.0033 17.6 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284162672|ref|YP_003401295.1| - 2e-05 24.9 12.0 0.011 16.1 1.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284162672|ref|YP_003401295.1| - 6.7e-05 23.1 17.8 0.007 16.8 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|284162672|ref|YP_003401295.1| - 0.06 12.9 3.9 0.77 9.4 0.3 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_11 PF13247.1 gi|284162672|ref|YP_003401295.1| - 0.18 11.6 3.3 0.62 9.9 2.4 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284162672|ref|YP_003401295.1| - 0.2 12.2 8.6 2.4 8.7 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|284162672|ref|YP_003401295.1| - 2 8.8 11.5 4.8 7.6 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain NADHdh PF00146.16 gi|284162673|ref|YP_003401296.1| - 3.2e-59 200.5 21.5 3.9e-59 200.2 14.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|284162674|ref|YP_003401297.1| - 5e-46 156.8 0.0 1.7e-36 125.6 0.1 2.4 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|284162674|ref|YP_003401297.1| - 3e-21 75.6 0.1 5.8e-21 74.6 0.1 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|284162674|ref|YP_003401297.1| - 2.8e-20 72.2 0.2 5.7e-20 71.2 0.1 1.5 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.14 gi|284162674|ref|YP_003401297.1| - 0.0034 16.2 0.1 0.0089 14.8 0.0 1.7 2 0 0 2 2 2 1 Nickel-dependent hydrogenase Oxidored_q4 PF00507.14 gi|284162675|ref|YP_003401298.1| - 8.8e-05 22.2 0.1 0.00012 21.8 0.1 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF443 PF04276.7 gi|284162675|ref|YP_003401298.1| - 0.011 15.1 1.0 0.013 14.9 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF443) Oxidored_q1 PF00361.15 gi|284162676|ref|YP_003401299.1| - 2.5e-25 89.2 19.4 2.5e-25 89.2 13.4 4.0 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|284162677|ref|YP_003401300.1| - 3.1e-40 138.1 31.2 2.2e-39 135.3 19.2 4.6 5 1 0 5 5 5 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|284162677|ref|YP_003401300.1| - 2.8e-07 29.9 3.6 2.8e-07 29.9 2.5 3.5 2 1 1 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|284162678|ref|YP_003401301.1| - 6.3e-51 173.2 25.1 6.3e-51 173.2 17.4 2.3 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|284162678|ref|YP_003401301.1| - 0.00026 20.4 1.0 0.00026 20.4 0.7 3.9 3 1 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|284162679|ref|YP_003401302.1| - 0.00056 19.4 12.9 0.0007 19.1 8.9 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q1 PF00361.15 gi|284162679|ref|YP_003401302.1| - 0.01 15.1 3.2 0.01 15.1 2.2 1.7 2 0 0 2 2 2 0 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF1673 PF07895.6 gi|284162679|ref|YP_003401302.1| - 2.1 7.8 6.5 2.4 7.6 4.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) ATP1G1_PLM_MAT8 PF02038.11 gi|284162679|ref|YP_003401302.1| - 3.9 6.5 7.3 1.3 8.0 0.9 2.6 3 0 0 3 3 3 0 ATP1G1/PLM/MAT8 family Oxidored_q3 PF00499.15 gi|284162680|ref|YP_003401303.1| - 0.004 16.9 16.1 0.0049 16.6 10.6 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CstA PF02554.9 gi|284162680|ref|YP_003401303.1| - 0.0087 14.7 11.7 0.011 14.4 8.1 1.0 1 0 0 1 1 1 1 Carbon starvation protein CstA IspA PF04279.10 gi|284162680|ref|YP_003401303.1| - 0.083 12.8 10.6 0.86 9.5 4.4 2.3 1 1 1 2 2 2 0 Intracellular septation protein A Frag1 PF10277.4 gi|284162680|ref|YP_003401303.1| - 0.36 10.2 12.1 0.29 10.5 7.3 1.7 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family DUF4131 PF13567.1 gi|284162680|ref|YP_003401303.1| - 0.47 9.8 16.0 0.14 11.5 3.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Kinocilin PF15033.1 gi|284162680|ref|YP_003401303.1| - 0.51 9.8 2.1 0.72 9.3 1.5 1.3 1 0 0 1 1 1 0 Kinocilin protein DUF3325 PF11804.3 gi|284162680|ref|YP_003401303.1| - 1 9.3 8.3 2.2 8.2 5.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3325) UPF0014 PF03649.8 gi|284162680|ref|YP_003401303.1| - 2.1 7.4 10.9 0.55 9.3 4.6 1.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0014) Oxidored_q2 PF00420.19 gi|284162680|ref|YP_003401303.1| - 2.5 7.7 18.3 0.78 9.3 7.2 2.9 2 2 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF3290 PF11694.3 gi|284162680|ref|YP_003401303.1| - 8.5 6.0 7.0 1.2 8.8 1.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3290) DUF1129 PF06570.6 gi|284162680|ref|YP_003401303.1| - 9.1 5.5 11.2 74 2.5 7.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Bac_luciferase PF00296.15 gi|284162681|ref|YP_003401304.1| - 1.2e-41 142.8 0.0 4.2e-41 141.0 0.0 1.7 1 1 0 1 1 1 1 Luciferase-like monooxygenase MTD PF01993.13 gi|284162682|ref|YP_003401305.1| - 2.5e-77 259.6 1.7 3.4e-77 259.2 1.2 1.1 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Flavoprotein PF02441.14 gi|284162682|ref|YP_003401305.1| - 0.061 13.0 0.1 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 Flavoprotein SHMT PF00464.14 gi|284162683|ref|YP_003401306.1| - 1.1e-69 234.7 0.0 1.3e-69 234.4 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|284162683|ref|YP_003401306.1| - 4.3e-10 39.2 0.0 7.4e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|284162683|ref|YP_003401306.1| - 1.3e-06 27.3 0.0 2.6e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|284162683|ref|YP_003401306.1| - 3.5e-05 22.7 0.0 5e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|284162683|ref|YP_003401306.1| - 0.0017 17.4 0.0 0.0043 16.0 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|284162683|ref|YP_003401306.1| - 0.0024 16.2 0.0 0.0039 15.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme FrhB_FdhB_C PF04432.8 gi|284162685|ref|YP_003401308.1| - 5.9e-48 162.3 0.1 5.9e-48 162.3 0.1 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|284162685|ref|YP_003401308.1| - 1.7e-25 88.7 0.1 2.8e-25 87.9 0.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_4 PF12800.2 gi|284162685|ref|YP_003401308.1| - 0.00071 19.7 2.6 0.00071 19.7 1.8 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284162685|ref|YP_003401308.1| - 0.0014 18.4 10.4 0.0014 18.4 7.2 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284162685|ref|YP_003401308.1| - 0.0018 17.7 6.4 0.0018 17.7 4.5 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284162685|ref|YP_003401308.1| - 0.0026 17.5 3.1 0.0026 17.5 2.2 2.6 3 0 0 3 3 1 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284162685|ref|YP_003401308.1| - 0.0052 17.5 1.1 0.0052 17.5 0.8 3.5 2 1 2 4 4 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|284162685|ref|YP_003401308.1| - 0.009 15.8 2.2 0.009 15.8 1.5 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|284162685|ref|YP_003401308.1| - 0.01 15.8 1.2 0.01 15.8 0.8 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain ALMT PF11744.3 gi|284162685|ref|YP_003401308.1| - 0.053 12.1 0.0 0.074 11.6 0.0 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter Fer4_13 PF13370.1 gi|284162685|ref|YP_003401308.1| - 0.096 13.0 0.6 0.096 13.0 0.4 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|284162685|ref|YP_003401308.1| - 0.35 10.7 15.2 0.17 11.7 8.2 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284162685|ref|YP_003401308.1| - 0.42 10.9 21.6 7.1 6.9 13.7 2.7 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284162685|ref|YP_003401308.1| - 1.9 8.8 22.9 0.94 9.9 13.3 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain tRNA-synt_1f PF01921.13 gi|284162686|ref|YP_003401309.1| - 4.9e-126 420.2 0.0 8.9e-126 419.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|284162686|ref|YP_003401309.1| - 4.4e-08 32.1 0.0 0.00017 20.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|284162686|ref|YP_003401309.1| - 0.00012 21.3 0.0 0.3 10.1 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain NIR_SIR PF01077.17 gi|284162686|ref|YP_003401309.1| - 0.088 12.1 0.0 0.2 11.0 0.0 1.6 1 0 0 1 1 1 0 Nitrite and sulphite reductase 4Fe-4S domain IF3_C PF00707.17 gi|284162686|ref|YP_003401309.1| - 0.092 12.5 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain tRNA-synt_1b PF00579.20 gi|284162686|ref|YP_003401309.1| - 0.098 11.7 0.1 0.24 10.4 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) CTP_transf_1 PF01148.15 gi|284162687|ref|YP_003401310.1| - 5.2e-16 59.0 10.7 5.4e-13 49.1 7.4 2.6 1 1 0 1 1 1 1 Cytidylyltransferase family EI24 PF07264.6 gi|284162687|ref|YP_003401310.1| - 0.052 12.9 6.4 0.067 12.6 4.5 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) MscL PF01741.13 gi|284162687|ref|YP_003401310.1| - 0.14 12.3 1.8 2.8 8.0 0.1 2.3 2 0 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL DUF1673 PF07895.6 gi|284162687|ref|YP_003401310.1| - 0.25 10.8 2.7 0.4 10.1 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) PrgI PF12666.2 gi|284162687|ref|YP_003401310.1| - 4.5 7.4 8.1 3.5 7.8 1.5 2.8 2 1 0 2 2 2 0 PrgI family protein PALP PF00291.20 gi|284162688|ref|YP_003401311.1| - 3.4e-77 259.7 2.7 3.9e-77 259.5 1.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.5 gi|284162688|ref|YP_003401311.1| - 0.082 12.9 0.3 15 5.6 0.0 3.1 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Glyco_transf_20 PF00982.16 gi|284162689|ref|YP_003401312.1| - 1.1e-160 535.2 0.0 1.5e-160 534.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.11 gi|284162689|ref|YP_003401312.1| - 7.6e-58 195.1 0.0 1.4e-57 194.2 0.0 1.4 1 0 0 1 1 1 1 Trehalose-phosphatase Glycos_transf_1 PF00534.15 gi|284162689|ref|YP_003401312.1| - 4.5e-08 32.7 2.8 0.013 14.9 0.0 3.4 3 0 0 3 3 3 2 Glycosyl transferases group 1 Hydrolase_3 PF08282.7 gi|284162689|ref|YP_003401312.1| - 2.1e-06 27.5 0.3 1.1e-05 25.1 0.0 2.3 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|284162689|ref|YP_003401312.1| - 0.0011 19.1 0.5 0.028 14.6 0.3 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PIN_4 PF13638.1 gi|284162689|ref|YP_003401312.1| - 0.0027 17.8 0.4 0.006 16.6 0.3 1.5 1 0 0 1 1 1 1 PIN domain Glyco_trans_1_4 PF13692.1 gi|284162689|ref|YP_003401312.1| - 0.0065 16.6 0.2 0.13 12.3 0.1 3.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 HAD_2 PF13419.1 gi|284162689|ref|YP_003401312.1| - 0.013 15.7 1.3 0.09 12.9 0.9 2.5 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Glyco_transf_5 PF08323.6 gi|284162689|ref|YP_003401312.1| - 0.056 12.9 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|284162689|ref|YP_003401312.1| - 0.066 13.4 0.3 0.22 11.8 0.2 1.9 1 0 0 1 1 1 0 Glycosyl transferases group 1 AAA_26 PF13500.1 gi|284162690|ref|YP_003401313.1| - 0.011 15.3 0.0 0.065 12.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|284162690|ref|YP_003401313.1| - 0.021 14.5 0.0 0.045 13.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UbiD PF01977.11 gi|284162691|ref|YP_003401314.1| - 9.4e-177 587.5 0.1 1.1e-176 587.2 0.1 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Glyco_trans_1_4 PF13692.1 gi|284162692|ref|YP_003401315.1| - 0.0018 18.4 0.0 0.0046 17.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|284162692|ref|YP_003401315.1| - 0.0018 18.4 0.0 0.0076 16.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284162692|ref|YP_003401315.1| - 0.0062 16.2 0.0 0.022 14.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 ArgJ PF01960.13 gi|284162693|ref|YP_003401316.1| - 7.1e-132 439.4 2.0 8.7e-132 439.1 1.4 1.0 1 0 0 1 1 1 1 ArgJ family Bcl-2 PF00452.14 gi|284162693|ref|YP_003401316.1| - 0.036 14.2 0.0 0.1 12.7 0.0 1.8 1 0 0 1 1 1 0 Apoptosis regulator proteins, Bcl-2 family tRNA-synt_His PF13393.1 gi|284162694|ref|YP_003401317.1| - 3.9e-70 236.3 0.0 4.9e-70 236.0 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|284162694|ref|YP_003401317.1| - 1.1e-26 93.4 0.2 3.8e-26 91.7 0.1 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|284162694|ref|YP_003401317.1| - 5.4e-12 45.5 2.3 2.6e-11 43.2 1.1 2.3 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|284162694|ref|YP_003401317.1| - 0.00011 21.1 4.5 0.0027 16.5 0.2 3.1 3 1 0 3 3 3 2 tRNA synthetases class II (D, K and N) Phos_pyr_kin PF08543.7 gi|284162695|ref|YP_003401318.1| - 2.9e-54 183.8 0.4 3.3e-54 183.6 0.2 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|284162695|ref|YP_003401318.1| - 1.6e-08 34.0 0.1 2e-08 33.7 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|284162695|ref|YP_003401318.1| - 2.5e-07 30.2 0.1 2.8e-07 30.0 0.1 1.1 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|284162695|ref|YP_003401318.1| - 0.00035 19.8 0.5 0.00054 19.2 0.4 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family UPF0126 PF03458.8 gi|284162696|ref|YP_003401319.1| - 1.4e-45 152.7 22.5 2.6e-23 81.4 6.3 2.3 2 0 0 2 2 2 2 UPF0126 domain Chitin_synth_1N PF08407.6 gi|284162697|ref|YP_003401320.1| - 0.041 13.5 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Chitin synthase N-terminal Phage_int_SAM_4 PF13495.1 gi|284162697|ref|YP_003401320.1| - 0.11 12.7 0.9 1 9.7 0.1 2.7 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain PRESAN PF09687.5 gi|284162698|ref|YP_003401321.1| - 0.014 15.4 1.2 0.044 13.8 0.5 2.0 1 1 0 1 1 1 0 Plasmodium RESA N-terminal DUF202 PF02656.10 gi|284162701|ref|YP_003401324.1| - 0.11 12.7 1.7 0.16 12.1 1.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) Tetraspannin PF00335.15 gi|284162701|ref|YP_003401324.1| - 0.37 10.0 4.5 0.44 9.7 3.1 1.0 1 0 0 1 1 1 0 Tetraspanin family Col_cuticle_N PF01484.12 gi|284162701|ref|YP_003401324.1| - 2.1 8.0 5.2 0.33 10.6 0.8 1.7 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain Corona_M PF01635.13 gi|284162702|ref|YP_003401325.1| - 0.035 13.0 0.4 0.035 13.0 0.3 1.4 2 0 0 2 2 2 0 Coronavirus M matrix/glycoprotein SHP PF03579.8 gi|284162702|ref|YP_003401325.1| - 4.2 6.7 5.1 4.6 6.6 0.1 2.1 2 0 0 2 2 2 0 Small hydrophobic protein HTH_38 PF13936.1 gi|284162705|ref|YP_003401328.1| - 1e-06 28.1 0.4 4e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|284162705|ref|YP_003401328.1| - 6.8e-06 25.3 0.0 1.9e-05 23.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|284162705|ref|YP_003401328.1| - 0.0001 21.8 0.0 0.0003 20.3 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|284162705|ref|YP_003401328.1| - 0.00018 20.8 0.2 0.0015 17.9 0.0 2.6 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_Tc3_1 PF11427.3 gi|284162705|ref|YP_003401328.1| - 0.0016 18.0 0.0 0.0035 16.9 0.0 1.6 1 0 0 1 1 1 1 Tc3 transposase HTH_3 PF01381.17 gi|284162705|ref|YP_003401328.1| - 0.0055 16.5 0.1 0.065 13.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_11 PF08279.7 gi|284162705|ref|YP_003401328.1| - 0.0079 15.8 0.0 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|284162705|ref|YP_003401328.1| - 0.011 15.0 0.1 0.052 12.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_7 PF02796.10 gi|284162705|ref|YP_003401328.1| - 0.018 14.9 2.2 0.019 14.8 0.1 2.2 3 0 0 3 3 2 0 Helix-turn-helix domain of resolvase Terminase_5 PF06056.7 gi|284162705|ref|YP_003401328.1| - 0.021 14.3 0.2 1.7 8.2 0.0 2.7 3 0 0 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|284162705|ref|YP_003401328.1| - 0.056 13.4 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain CPSase_L_D3 PF02787.14 gi|284162705|ref|YP_003401328.1| - 0.059 13.1 0.3 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Trp_repressor PF01371.14 gi|284162705|ref|YP_003401328.1| - 0.064 13.1 0.2 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 Trp repressor protein Bac_DNA_binding PF00216.16 gi|284162705|ref|YP_003401328.1| - 0.1 12.6 0.6 15 5.6 0.0 3.2 3 0 0 3 3 3 0 Bacterial DNA-binding protein DUF1670 PF07900.6 gi|284162705|ref|YP_003401328.1| - 0.12 11.5 1.9 0.16 11.1 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1670) HTH_29 PF13551.1 gi|284162705|ref|YP_003401328.1| - 0.13 12.4 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_19 PF12844.2 gi|284162705|ref|YP_003401328.1| - 0.15 12.0 0.7 0.5 10.4 0.1 2.2 3 0 0 3 3 2 0 Helix-turn-helix domain zf-GRF PF06839.7 gi|284162706|ref|YP_003401329.1| - 0.074 12.9 1.5 0.074 12.9 1.0 1.6 2 0 0 2 2 2 0 GRF zinc finger zf-ribbon_3 PF13248.1 gi|284162708|ref|YP_003401331.1| - 0.17 11.1 0.4 0.29 10.4 0.0 1.6 2 0 0 2 2 2 0 zinc-ribbon domain Prim-Pol PF09250.6 gi|284162709|ref|YP_003401332.1| - 2.5e-24 86.0 0.1 4.4e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 Bifunctional DNA primase/polymerase, N-terminal Raftlin PF15250.1 gi|284162709|ref|YP_003401332.1| - 0.075 11.5 5.3 0.12 10.8 3.7 1.2 1 0 0 1 1 1 0 Raftlin RHH_1 PF01402.16 gi|284162711|ref|YP_003401334.1| - 1.2e-09 37.6 0.5 1.6e-09 37.2 0.3 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PadR PF03551.9 gi|284162712|ref|YP_003401335.1| - 0.015 15.0 0.0 0.039 13.7 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Pribosyltran PF00156.22 gi|284162713|ref|YP_003401336.1| - 1e-24 86.6 0.5 1.8e-24 85.8 0.2 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|284162713|ref|YP_003401336.1| - 0.031 13.4 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_3 PF15610.1 gi|284162713|ref|YP_003401336.1| - 0.036 12.9 0.1 0.056 12.3 0.1 1.2 1 0 0 1 1 1 0 PRTase ComF-like TAFH PF07531.9 gi|284162713|ref|YP_003401336.1| - 0.051 13.2 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 NHR1 homology to TAF UPF0181 PF03701.9 gi|284162713|ref|YP_003401336.1| - 0.086 12.1 0.2 0.17 11.1 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) Adenine_deam_C PF13382.1 gi|284162714|ref|YP_003401337.1| - 1.3e-62 209.9 0.6 2.4e-62 209.0 0.4 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|284162714|ref|YP_003401337.1| - 1.6e-36 126.6 0.0 2.9e-34 119.2 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|284162714|ref|YP_003401337.1| - 3.5e-11 42.7 0.2 1.6e-10 40.6 0.1 2.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|284162714|ref|YP_003401337.1| - 1.3e-10 41.8 0.0 0.00015 21.8 0.0 2.5 1 1 1 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|284162714|ref|YP_003401337.1| - 0.0029 16.8 0.1 0.94 8.6 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family PHP PF02811.14 gi|284162715|ref|YP_003401338.1| - 1.8e-16 60.4 0.6 6.7e-16 58.5 0.4 1.7 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|284162715|ref|YP_003401338.1| - 3e-10 39.4 0.0 5.2e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 PHP-associated MFS_1 PF07690.11 gi|284162716|ref|YP_003401339.1| - 3.4e-24 85.2 18.0 4e-24 84.9 12.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|284162716|ref|YP_003401339.1| - 3.9e-09 35.1 5.7 4.5e-09 34.9 3.9 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|284162716|ref|YP_003401339.1| - 0.0003 19.5 12.4 0.00049 18.7 8.6 1.3 1 0 0 1 1 1 1 Sugar (and other) transporter UNC-93 PF05978.11 gi|284162716|ref|YP_003401339.1| - 0.0017 17.8 2.0 0.0026 17.2 1.4 1.5 1 0 0 1 1 1 1 Ion channel regulatory protein UNC-93 MFS_2 PF13347.1 gi|284162716|ref|YP_003401339.1| - 0.016 13.5 12.8 0.029 12.7 8.9 1.4 1 1 0 1 1 1 0 MFS/sugar transport protein HD PF01966.17 gi|284162717|ref|YP_003401340.1| - 1.9e-17 63.4 1.8 1.9e-17 63.4 1.3 1.7 2 0 0 2 2 2 1 HD domain Alpha-2-MRAP_C PF06401.6 gi|284162717|ref|YP_003401340.1| - 0.008 16.0 0.2 0.016 15.0 0.2 1.5 1 0 0 1 1 1 1 Alpha-2-macroglobulin RAP, C-terminal domain QueF PF14489.1 gi|284162718|ref|YP_003401341.1| - 1.6e-18 66.3 0.3 5.7e-18 64.6 0.1 1.8 2 0 0 2 2 2 1 QueF-like protein Nuc_deoxyrib_tr PF05014.10 gi|284162718|ref|YP_003401341.1| - 1.3e-09 37.9 0.0 2.9e-09 36.8 0.0 1.5 1 1 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF4406 PF14359.1 gi|284162718|ref|YP_003401341.1| - 0.0026 17.7 0.0 0.0059 16.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4406) UDPG_MGDP_dh_C PF03720.10 gi|284162718|ref|YP_003401341.1| - 0.027 14.6 0.1 0.058 13.5 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FUR PF01475.14 gi|284162718|ref|YP_003401341.1| - 0.048 13.5 1.9 5.1 7.0 0.0 2.6 3 0 0 3 3 3 0 Ferric uptake regulator family DUF3039 PF11238.3 gi|284162718|ref|YP_003401341.1| - 0.05 13.0 0.0 0.23 10.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) GTP_cyclohydroI PF01227.17 gi|284162718|ref|YP_003401341.1| - 0.056 12.7 0.0 0.15 11.3 0.0 1.7 2 0 0 2 2 2 0 GTP cyclohydrolase I Saccharop_dh_N PF04455.7 gi|284162719|ref|YP_003401342.1| - 1e-28 99.4 0.0 1.9e-28 98.6 0.0 1.4 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region YqfD PF06898.6 gi|284162719|ref|YP_003401342.1| - 0.064 11.9 0.2 0.18 10.4 0.1 1.6 1 1 0 1 1 1 0 Putative stage IV sporulation protein YqfD AMP-binding_C_2 PF14535.1 gi|284162720|ref|YP_003401343.1| - 8.2e-32 109.1 0.6 7.2e-31 106.0 0.3 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|284162720|ref|YP_003401343.1| - 6.6e-24 84.0 1.5 2.5e-23 82.1 1.0 1.7 1 1 0 1 1 1 1 AMP-binding enzyme IF2_N PF04760.10 gi|284162721|ref|YP_003401344.1| - 0.014 15.0 0.2 5.5 6.7 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region SHS2_Rpb7-N PF03876.12 gi|284162721|ref|YP_003401344.1| - 0.17 12.0 0.7 10 6.2 0.1 2.4 1 1 1 2 2 2 0 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 DUF1892 PF08987.5 gi|284162721|ref|YP_003401344.1| - 9.3 6.3 8.3 4.4 7.3 0.8 2.7 2 2 0 2 2 2 0 Protein of unknown function (DUF1892) ACT PF01842.20 gi|284162722|ref|YP_003401345.1| - 2.9e-17 61.7 0.0 3e-08 32.9 0.0 2.1 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|284162722|ref|YP_003401345.1| - 5.2e-08 33.1 0.0 0.012 15.8 0.0 2.1 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|284162722|ref|YP_003401345.1| - 1.4e-05 24.4 0.0 0.11 11.9 0.0 2.9 2 2 0 2 2 2 2 ACT domain LytR_C PF13399.1 gi|284162722|ref|YP_003401345.1| - 0.0012 19.2 0.0 4.7 7.6 0.0 2.8 2 1 1 3 3 3 2 LytR cell envelope-related transcriptional attenuator ACT_6 PF13740.1 gi|284162722|ref|YP_003401345.1| - 0.0033 17.0 0.0 2.1 8.1 0.0 2.4 1 1 2 3 3 3 2 ACT domain DUF4350 PF14258.1 gi|284162722|ref|YP_003401345.1| - 0.092 12.9 0.0 0.27 11.4 0.0 1.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) DUF2103 PF09876.4 gi|284162723|ref|YP_003401346.1| - 6.5e-35 118.9 0.1 9.9e-35 118.4 0.1 1.3 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) HTH_3 PF01381.17 gi|284162724|ref|YP_003401347.1| - 3.2e-14 52.4 1.9 5e-14 51.8 1.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|284162724|ref|YP_003401347.1| - 2.1e-11 43.8 0.0 3.5e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|284162724|ref|YP_003401347.1| - 5.2e-10 39.2 1.5 1e-09 38.3 1.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|284162724|ref|YP_003401347.1| - 0.0004 19.9 3.2 0.00054 19.5 1.3 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|284162724|ref|YP_003401347.1| - 0.027 14.2 0.2 0.058 13.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DEK_C PF08766.6 gi|284162724|ref|YP_003401347.1| - 0.048 13.4 0.9 0.07 12.9 0.0 1.7 2 0 0 2 2 2 0 DEK C terminal domain AAA PF00004.24 gi|284162725|ref|YP_003401348.1| - 1.9e-45 154.2 0.0 4.4e-45 153.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|284162725|ref|YP_003401348.1| - 4.2e-08 33.2 0.0 1.1e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|284162725|ref|YP_003401348.1| - 9.4e-07 28.9 0.9 4.9e-06 26.6 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|284162725|ref|YP_003401348.1| - 4.3e-06 26.8 0.4 0.0003 20.9 0.3 2.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284162725|ref|YP_003401348.1| - 4.7e-06 27.4 0.5 9.7e-05 23.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|284162725|ref|YP_003401348.1| - 5.1e-06 26.2 0.1 3.3e-05 23.6 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|284162725|ref|YP_003401348.1| - 4.1e-05 22.7 0.0 9.3e-05 21.5 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|284162725|ref|YP_003401348.1| - 7.1e-05 21.8 0.0 0.00013 20.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|284162725|ref|YP_003401348.1| - 0.00023 21.1 0.7 0.00079 19.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|284162725|ref|YP_003401348.1| - 0.00043 20.4 0.0 0.0017 18.5 0.0 2.0 2 0 0 2 2 1 1 RNA helicase IstB_IS21 PF01695.12 gi|284162725|ref|YP_003401348.1| - 0.00081 18.8 0.1 0.002 17.5 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|284162725|ref|YP_003401348.1| - 0.0013 18.4 0.3 0.0032 17.1 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|284162725|ref|YP_003401348.1| - 0.0013 18.6 0.0 0.0036 17.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|284162725|ref|YP_003401348.1| - 0.0016 17.5 0.0 0.0038 16.3 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|284162725|ref|YP_003401348.1| - 0.0027 17.6 0.0 0.006 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|284162725|ref|YP_003401348.1| - 0.0038 15.9 0.0 0.0058 15.3 0.0 1.2 1 0 0 1 1 1 1 TIP49 C-terminus AAA_24 PF13479.1 gi|284162725|ref|YP_003401348.1| - 0.007 15.9 0.5 0.013 15.1 0.3 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|284162725|ref|YP_003401348.1| - 0.0076 15.9 0.8 0.045 13.4 0.0 2.6 3 0 0 3 3 3 1 NTPase Mg_chelatase PF01078.16 gi|284162725|ref|YP_003401348.1| - 0.0079 15.3 0.1 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NB-ARC PF00931.17 gi|284162725|ref|YP_003401348.1| - 0.0093 14.8 0.0 0.017 13.9 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_18 PF13238.1 gi|284162725|ref|YP_003401348.1| - 0.011 16.0 0.0 0.011 16.0 0.0 2.6 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|284162725|ref|YP_003401348.1| - 0.013 14.9 5.4 0.24 10.7 0.1 3.1 2 1 0 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|284162725|ref|YP_003401348.1| - 0.015 15.0 0.1 0.015 15.0 0.1 2.9 2 2 1 3 3 3 0 Archaeal ATPase AAA_3 PF07726.6 gi|284162725|ref|YP_003401348.1| - 0.015 14.8 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|284162725|ref|YP_003401348.1| - 0.019 14.6 0.3 0.22 11.1 0.1 2.2 2 0 0 2 2 2 0 NACHT domain EzrA PF06160.7 gi|284162725|ref|YP_003401348.1| - 0.021 13.0 3.8 0.035 12.3 2.6 1.3 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Sigma54_activat PF00158.21 gi|284162725|ref|YP_003401348.1| - 0.033 13.6 0.0 0.12 11.8 0.0 1.9 2 0 0 2 2 1 0 Sigma-54 interaction domain CCDC155 PF14662.1 gi|284162725|ref|YP_003401348.1| - 0.038 13.5 2.6 0.08 12.5 1.5 1.7 2 0 0 2 2 1 0 Coiled-coil region of CCDC155 KaiC PF06745.8 gi|284162725|ref|YP_003401348.1| - 0.042 12.9 1.7 0.12 11.5 0.0 2.3 2 1 1 3 3 3 0 KaiC Parvo_NS1 PF01057.12 gi|284162725|ref|YP_003401348.1| - 0.048 12.5 0.0 0.091 11.6 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|284162725|ref|YP_003401348.1| - 0.063 12.8 0.1 0.74 9.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|284162725|ref|YP_003401348.1| - 0.063 12.5 0.1 0.12 11.5 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.1 gi|284162725|ref|YP_003401348.1| - 0.083 12.4 0.6 0.19 11.3 0.0 1.9 2 0 0 2 2 1 0 AAA domain SAS4 PF15460.1 gi|284162725|ref|YP_003401348.1| - 0.091 12.6 4.3 0.13 12.1 1.9 2.0 1 1 1 2 2 2 0 Something about silencing, SAS, complex subunit 4 Sigma54_activ_2 PF14532.1 gi|284162725|ref|YP_003401348.1| - 0.1 12.6 0.0 0.27 11.2 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|284162725|ref|YP_003401348.1| - 0.16 12.2 0.0 0.5 10.6 0.0 1.9 1 0 0 1 1 1 0 ABC transporter AAA_23 PF13476.1 gi|284162725|ref|YP_003401348.1| - 0.52 10.6 12.2 17 5.6 0.0 2.6 3 0 0 3 3 2 0 AAA domain ERM PF00769.14 gi|284162725|ref|YP_003401348.1| - 0.88 9.0 8.5 0.26 10.8 3.9 1.5 2 0 0 2 2 1 0 Ezrin/radixin/moesin family APG6 PF04111.7 gi|284162725|ref|YP_003401348.1| - 0.92 8.4 5.6 1.5 7.7 3.9 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 IncA PF04156.9 gi|284162725|ref|YP_003401348.1| - 2.2 7.8 12.1 0.72 9.4 6.3 1.6 2 0 0 2 2 2 0 IncA protein RHH_1 PF01402.16 gi|284162726|ref|YP_003401349.1| - 0.0014 18.4 1.9 0.0043 16.8 0.0 2.6 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family RepB-RCR_reg PF10723.4 gi|284162726|ref|YP_003401349.1| - 0.084 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Replication regulatory protein RepB MreB_Mbl PF06723.8 gi|284162727|ref|YP_003401350.1| - 9.7e-20 70.4 0.6 1.7e-18 66.3 0.4 2.0 1 1 0 1 1 1 1 MreB/Mbl protein Actin PF00022.14 gi|284162727|ref|YP_003401350.1| - 1.5e-09 36.7 0.3 1.5e-05 23.5 0.1 2.2 1 1 0 2 2 2 2 Actin PilM_2 PF11104.3 gi|284162727|ref|YP_003401350.1| - 0.0038 16.1 0.0 0.0072 15.2 0.0 1.4 1 1 0 1 1 1 1 Type IV pilus assembly protein PilM; Hydantoinase_A PF01968.13 gi|284162727|ref|YP_003401350.1| - 0.011 14.8 0.6 2.4 7.1 0.3 2.3 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase HSP70 PF00012.15 gi|284162727|ref|YP_003401350.1| - 0.028 12.3 1.0 0.057 11.3 0.0 2.0 2 0 0 2 2 2 0 Hsp70 protein HTH_33 PF13592.1 gi|284162727|ref|YP_003401350.1| - 0.093 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Amidohydro_1 PF01979.15 gi|284162728|ref|YP_003401351.1| - 1.2e-15 58.0 0.1 5.1e-15 55.9 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|284162728|ref|YP_003401351.1| - 1.1e-11 45.2 0.0 6.9e-10 39.4 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|284162728|ref|YP_003401351.1| - 1.3e-05 24.8 0.1 3.2e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|284162728|ref|YP_003401351.1| - 0.034 13.3 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Amidohydrolase family Radical_SAM PF04055.16 gi|284162729|ref|YP_003401352.1| - 8.4e-16 58.5 0.2 1.3e-15 57.9 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|284162729|ref|YP_003401352.1| - 8.9e-05 22.7 0.7 0.00024 21.3 0.5 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain RuBisCO_large PF00016.15 gi|284162730|ref|YP_003401353.1| - 2.7e-80 269.5 0.2 3.8e-80 269.0 0.2 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|284162730|ref|YP_003401353.1| - 7.8e-34 116.0 0.0 2.7e-33 114.3 0.0 1.9 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain FA_desaturase_2 PF03405.9 gi|284162730|ref|YP_003401353.1| - 0.083 11.6 0.0 0.16 10.7 0.0 1.3 1 0 0 1 1 1 0 Fatty acid desaturase ABC_sub_bind PF04392.7 gi|284162731|ref|YP_003401354.1| - 0.047 12.6 0.0 0.052 12.4 0.0 1.0 1 0 0 1 1 1 0 ABC transporter substrate binding protein DUF1353 PF07087.6 gi|284162731|ref|YP_003401354.1| - 0.059 12.8 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1353) zf-ribbon_3 PF13248.1 gi|284162732|ref|YP_003401355.1| - 1.1e-06 27.6 1.5 0.0078 15.3 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284162732|ref|YP_003401355.1| - 9.5e-06 24.9 0.4 0.068 12.6 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|284162732|ref|YP_003401355.1| - 0.0002 20.6 2.3 0.00031 20.0 1.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|284162732|ref|YP_003401355.1| - 0.00057 19.4 7.0 0.0058 16.1 1.6 2.0 1 1 1 2 2 2 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|284162732|ref|YP_003401355.1| - 0.0006 19.5 0.4 0.0019 17.9 0.3 1.7 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.2 gi|284162732|ref|YP_003401355.1| - 0.00066 19.4 0.8 0.0011 18.7 0.5 1.3 1 1 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|284162732|ref|YP_003401355.1| - 0.0018 18.1 1.9 0.0066 16.3 1.3 1.8 1 1 1 2 2 2 1 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|284162732|ref|YP_003401355.1| - 0.0021 17.7 2.9 0.038 13.6 2.0 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|284162732|ref|YP_003401355.1| - 0.0036 17.3 3.1 1.2 9.2 0.3 2.2 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|284162732|ref|YP_003401355.1| - 0.0036 16.9 0.8 0.0054 16.3 0.5 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|284162732|ref|YP_003401355.1| - 0.0039 16.9 0.3 0.0061 16.3 0.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Tmemb_55A PF09788.4 gi|284162732|ref|YP_003401355.1| - 0.0041 16.2 0.1 0.0047 16.0 0.0 1.1 1 0 0 1 1 1 1 Transmembrane protein 55A DUF1610 PF07754.6 gi|284162732|ref|YP_003401355.1| - 0.0057 16.7 6.2 0.65 10.1 0.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DNA_RNApol_7kD PF03604.8 gi|284162732|ref|YP_003401355.1| - 0.0068 15.8 2.6 0.023 14.1 1.8 1.9 1 1 1 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|284162732|ref|YP_003401355.1| - 0.007 16.0 0.5 0.009 15.6 0.3 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|284162732|ref|YP_003401355.1| - 0.0077 16.1 3.2 1.1 9.3 0.1 2.2 1 1 1 2 2 2 1 zinc-finger binding domain of transposase IS66 Ogr_Delta PF04606.7 gi|284162732|ref|YP_003401355.1| - 0.0085 15.7 0.5 3.4 7.3 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Lar_restr_allev PF14354.1 gi|284162732|ref|YP_003401355.1| - 0.011 16.0 0.5 0.19 12.0 0.7 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|284162732|ref|YP_003401355.1| - 0.013 15.1 3.6 0.013 15.1 2.5 2.1 2 1 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF164 PF02591.10 gi|284162732|ref|YP_003401355.1| - 0.014 15.1 4.4 0.15 11.8 0.1 2.2 1 1 1 2 2 2 0 Putative zinc ribbon domain UPF0547 PF10571.4 gi|284162732|ref|YP_003401355.1| - 0.014 15.0 4.4 1.5 8.5 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 IBR PF01485.16 gi|284162732|ref|YP_003401355.1| - 0.015 15.1 0.4 0.019 14.8 0.3 1.1 1 0 0 1 1 1 0 IBR domain zf-TFIIB PF13453.1 gi|284162732|ref|YP_003401355.1| - 0.018 14.1 1.9 0.027 13.6 1.3 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger DUF35_N PF12172.3 gi|284162732|ref|YP_003401355.1| - 0.022 14.6 1.5 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_ribbon_recom PF13408.1 gi|284162732|ref|YP_003401355.1| - 0.025 14.8 0.1 0.26 11.5 0.0 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Sgf11 PF08209.6 gi|284162732|ref|YP_003401355.1| - 0.027 13.7 5.2 0.18 11.1 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) ADK_lid PF05191.9 gi|284162732|ref|YP_003401355.1| - 0.039 13.6 1.4 3.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C4_Topoisom PF01396.14 gi|284162732|ref|YP_003401355.1| - 0.04 13.4 0.9 2.6 7.6 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-RING_3 PF14369.1 gi|284162732|ref|YP_003401355.1| - 0.041 13.8 0.6 5.7 7.0 0.0 2.2 2 0 0 2 2 2 0 zinc-finger CpXC PF14353.1 gi|284162732|ref|YP_003401355.1| - 0.05 13.5 1.2 1.6 8.6 0.0 2.1 1 1 1 2 2 2 0 CpXC protein zf-tcix PF14952.1 gi|284162732|ref|YP_003401355.1| - 0.053 12.8 1.3 7.1 6.0 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Prim_Zn_Ribbon PF08273.7 gi|284162732|ref|YP_003401355.1| - 0.053 13.6 3.1 3.8 7.6 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-NADH-PPase PF09297.6 gi|284162732|ref|YP_003401355.1| - 0.055 12.9 3.6 0.72 9.4 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_3 PF13878.1 gi|284162732|ref|YP_003401355.1| - 0.062 12.8 2.0 2.8 7.6 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DRP PF06044.7 gi|284162732|ref|YP_003401355.1| - 0.068 12.1 0.0 0.078 11.9 0.0 1.1 1 0 0 1 1 1 0 Dam-replacing family zf-CCHC PF00098.18 gi|284162732|ref|YP_003401355.1| - 0.069 13.1 2.5 5.9 7.0 0.2 2.2 2 0 0 2 2 2 0 Zinc knuckle A2L_zn_ribbon PF08792.5 gi|284162732|ref|YP_003401355.1| - 0.082 12.3 1.7 5.8 6.5 0.1 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain Elf1 PF05129.8 gi|284162732|ref|YP_003401355.1| - 0.083 12.5 0.2 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Cys_rich_CPXG PF14255.1 gi|284162732|ref|YP_003401355.1| - 0.085 12.6 0.9 10 6.0 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF329 PF03884.9 gi|284162732|ref|YP_003401355.1| - 0.1 12.1 1.7 2.3 7.8 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) FYVE PF01363.16 gi|284162732|ref|YP_003401355.1| - 0.11 12.3 0.1 4.9 7.1 0.0 2.0 2 0 0 2 2 2 0 FYVE zinc finger Ribosomal_S27 PF01599.14 gi|284162732|ref|YP_003401355.1| - 0.13 12.1 1.3 0.22 11.3 0.9 1.4 1 1 0 1 1 1 0 Ribosomal protein S27a TerY-C PF15616.1 gi|284162732|ref|YP_003401355.1| - 0.14 12.1 1.4 0.84 9.5 1.0 1.9 1 1 0 1 1 1 0 TerY-C metal binding domain zf-H2C2_2 PF13465.1 gi|284162732|ref|YP_003401355.1| - 0.15 12.4 0.5 7.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain DUF983 PF06170.7 gi|284162732|ref|YP_003401355.1| - 0.15 12.1 3.2 0.93 9.6 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Trm112p PF03966.11 gi|284162732|ref|YP_003401355.1| - 0.17 12.2 2.4 0.22 11.8 0.1 1.9 1 1 1 2 2 2 0 Trm112p-like protein zf-C2HC_2 PF13913.1 gi|284162732|ref|YP_003401355.1| - 0.25 11.0 6.9 0.59 9.8 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Rubredoxin PF00301.15 gi|284162732|ref|YP_003401355.1| - 0.32 10.9 2.3 11 5.9 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin zf-HYPF PF07503.7 gi|284162732|ref|YP_003401355.1| - 0.39 10.1 5.2 1.7 8.1 0.2 2.2 2 0 0 2 2 2 0 HypF finger zf-LITAF-like PF10601.4 gi|284162732|ref|YP_003401355.1| - 0.97 9.3 5.4 14 5.6 0.8 2.6 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DUF1272 PF06906.6 gi|284162732|ref|YP_003401355.1| - 1 9.2 5.1 12 5.8 0.4 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1272) Nudix_N_2 PF14803.1 gi|284162732|ref|YP_003401355.1| - 1.7 8.4 4.1 8.3 6.1 2.9 1.9 1 1 1 2 2 2 0 Nudix N-terminal zf-RING_4 PF14570.1 gi|284162732|ref|YP_003401355.1| - 1.9 8.1 6.9 1 8.9 0.4 2.1 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain DUF3797 PF12677.2 gi|284162732|ref|YP_003401355.1| - 2.1 8.0 4.8 4.3 7.0 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-HIT PF04438.11 gi|284162732|ref|YP_003401355.1| - 2.7 7.6 5.2 17 5.1 0.4 2.1 2 0 0 2 2 2 0 HIT zinc finger Cons_hypoth698 PF03601.9 gi|284162733|ref|YP_003401356.1| - 3.8e-23 81.5 12.3 4.4e-23 81.3 8.2 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 698 ATP-synt_B PF00430.13 gi|284162734|ref|YP_003401357.1| - 7.4e-10 38.7 24.8 8.2e-10 38.5 17.2 1.1 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|284162734|ref|YP_003401357.1| - 4.4e-05 22.7 23.4 4.4e-05 22.7 16.2 1.9 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) HrpE PF06188.7 gi|284162734|ref|YP_003401357.1| - 0.00011 22.0 7.9 0.00012 21.8 5.5 1.1 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E V-ATPase_G PF03179.10 gi|284162734|ref|YP_003401357.1| - 0.0029 17.8 21.9 0.0034 17.6 15.2 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit Baculo_PEP_C PF04513.7 gi|284162734|ref|YP_003401357.1| - 0.0061 16.3 0.9 0.0087 15.8 0.6 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DivIVA PF05103.8 gi|284162734|ref|YP_003401357.1| - 0.013 15.5 20.2 0.019 15.0 13.5 1.6 1 1 0 1 1 1 0 DivIVA protein Aldedh PF00171.17 gi|284162734|ref|YP_003401357.1| - 0.024 12.9 6.2 0.027 12.8 4.3 1.0 1 0 0 1 1 1 0 Aldehyde dehydrogenase family Ribosomal_L22 PF00237.14 gi|284162734|ref|YP_003401357.1| - 0.04 13.8 6.1 0.051 13.5 4.3 1.4 1 0 0 1 1 1 0 Ribosomal protein L22p/L17e Cas_Cas1 PF01867.11 gi|284162734|ref|YP_003401357.1| - 0.11 11.6 6.9 0.12 11.4 4.8 1.0 1 0 0 1 1 1 0 CRISPR associated protein Cas1 DUF883 PF05957.8 gi|284162734|ref|YP_003401357.1| - 0.12 12.7 9.6 1.1 9.7 3.8 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Apolipoprotein PF01442.13 gi|284162734|ref|YP_003401357.1| - 0.13 11.7 8.4 0.16 11.4 5.4 1.4 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Prominin PF05478.6 gi|284162734|ref|YP_003401357.1| - 0.17 9.3 5.0 0.19 9.2 3.5 1.1 1 0 0 1 1 1 0 Prominin His_Phos_2 PF00328.17 gi|284162734|ref|YP_003401357.1| - 0.23 10.7 3.1 0.26 10.5 2.2 1.0 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 2) DUF4361 PF14274.1 gi|284162734|ref|YP_003401357.1| - 0.4 10.3 2.7 0.48 10.0 1.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4361) DUF87 PF01935.12 gi|284162734|ref|YP_003401357.1| - 0.4 10.4 6.3 0.45 10.2 4.4 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF87 PRESAN PF09687.5 gi|284162734|ref|YP_003401357.1| - 0.43 10.6 11.6 0.32 11.0 2.5 2.0 1 1 1 2 2 2 0 Plasmodium RESA N-terminal RapA_C PF12137.3 gi|284162734|ref|YP_003401357.1| - 0.5 9.1 9.9 0.55 9.0 6.6 1.3 1 1 0 1 1 1 0 RNA polymerase recycling family C-terminal Exonuc_VII_L PF02601.10 gi|284162734|ref|YP_003401357.1| - 0.56 9.3 8.1 0.63 9.1 5.6 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF3584 PF12128.3 gi|284162734|ref|YP_003401357.1| - 0.69 7.1 14.7 0.8 6.9 10.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Translin PF01997.11 gi|284162734|ref|YP_003401357.1| - 0.72 9.4 7.6 0.87 9.1 5.3 1.2 1 0 0 1 1 1 0 Translin family OmpH PF03938.9 gi|284162734|ref|YP_003401357.1| - 0.75 9.7 16.5 0.91 9.4 11.4 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) IFT46_B_C PF12317.3 gi|284162734|ref|YP_003401357.1| - 0.76 9.0 5.4 0.86 8.9 3.7 1.2 1 0 0 1 1 1 0 Intraflagellar transport complex B protein 46 C terminal DUF1098 PF06497.6 gi|284162734|ref|YP_003401357.1| - 0.88 9.6 6.4 0.6 10.2 2.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1098) vATP-synt_E PF01991.13 gi|284162734|ref|YP_003401357.1| - 0.89 8.7 33.5 0.7 9.1 20.0 2.0 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit Sec5 PF15469.1 gi|284162734|ref|YP_003401357.1| - 0.95 9.1 10.6 2 8.1 6.8 1.7 1 1 1 2 2 2 0 Exocyst complex component Sec5 FIVAR PF07554.8 gi|284162734|ref|YP_003401357.1| - 1.1 9.5 12.6 0.19 11.9 3.1 2.4 1 1 1 2 2 2 0 Uncharacterised Sugar-binding Domain ParB PF08775.5 gi|284162734|ref|YP_003401357.1| - 1.1 9.6 13.4 1.4 9.2 9.3 1.2 1 0 0 1 1 1 0 ParB family Laminin_II PF06009.7 gi|284162734|ref|YP_003401357.1| - 1.1 9.0 13.0 1.6 8.4 9.0 1.2 1 0 0 1 1 1 0 Laminin Domain II AbiH PF14253.1 gi|284162734|ref|YP_003401357.1| - 1.1 8.7 9.8 1.3 8.5 6.8 1.1 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH Peptidase_M41 PF01434.13 gi|284162734|ref|YP_003401357.1| - 1.4 8.3 10.4 0.9 8.9 5.8 1.6 1 1 1 2 2 2 0 Peptidase family M41 hDGE_amylase PF14701.1 gi|284162734|ref|YP_003401357.1| - 1.6 7.5 9.7 1.6 7.5 6.7 1.0 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme HAUS-augmin3 PF14932.1 gi|284162734|ref|YP_003401357.1| - 1.6 7.8 12.4 2.2 7.4 8.6 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 GvpO PF05800.6 gi|284162734|ref|YP_003401357.1| - 1.7 8.5 8.6 2.2 8.2 3.8 2.0 1 1 1 2 2 2 0 Gas vesicle synthesis protein GvpO Peptidase_M32 PF02074.10 gi|284162734|ref|YP_003401357.1| - 1.8 7.1 7.8 2.1 6.9 5.4 1.0 1 0 0 1 1 1 0 Carboxypeptidase Taq (M32) metallopeptidase Fmp27_WPPW PF10359.4 gi|284162734|ref|YP_003401357.1| - 2.2 6.6 11.6 2.5 6.3 8.0 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Borrelia_P83 PF05262.6 gi|284162734|ref|YP_003401357.1| - 2.2 6.4 19.3 2.7 6.1 13.4 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Clathrin_lg_ch PF01086.12 gi|284162734|ref|YP_003401357.1| - 2.3 8.0 16.8 2.5 7.9 11.7 1.1 1 0 0 1 1 1 0 Clathrin light chain DUF763 PF05559.6 gi|284162734|ref|YP_003401357.1| - 2.3 7.0 5.5 2.6 6.9 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF763) Prefoldin PF02996.12 gi|284162734|ref|YP_003401357.1| - 2.8 7.6 20.2 0.91 9.1 7.4 2.5 1 1 1 2 2 2 0 Prefoldin subunit THRAP3_BCLAF1 PF15440.1 gi|284162734|ref|YP_003401357.1| - 3 6.3 12.7 3.3 6.2 8.8 1.0 1 0 0 1 1 1 0 THRAP3/BCLAF1 family ALMT PF11744.3 gi|284162734|ref|YP_003401357.1| - 4.3 5.8 10.3 5.2 5.6 7.1 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF885 PF05960.6 gi|284162734|ref|YP_003401357.1| - 4.9 6.2 8.5 5.6 5.9 5.9 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) DUF3807 PF12720.2 gi|284162734|ref|YP_003401357.1| - 4.9 7.2 11.4 5.6 7.0 7.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3807) HSP70 PF00012.15 gi|284162734|ref|YP_003401357.1| - 5 4.9 16.9 5.5 4.7 11.7 1.0 1 0 0 1 1 1 0 Hsp70 protein DUF262 PF03235.9 gi|284162734|ref|YP_003401357.1| - 5 7.0 9.3 5.9 6.7 6.5 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF262 DUF1451 PF07295.6 gi|284162734|ref|YP_003401357.1| - 5.1 6.8 9.8 6.5 6.5 6.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Rgp1 PF08737.5 gi|284162734|ref|YP_003401357.1| - 5.5 5.9 8.2 6.4 5.7 5.7 1.0 1 0 0 1 1 1 0 Rgp1 AAA_13 PF13166.1 gi|284162734|ref|YP_003401357.1| - 6.2 5.1 18.1 7.2 4.9 12.5 1.1 1 0 0 1 1 1 0 AAA domain DUF2203 PF09969.4 gi|284162734|ref|YP_003401357.1| - 6.6 6.9 10.9 14 5.9 7.6 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF3435 PF11917.3 gi|284162734|ref|YP_003401357.1| - 6.6 5.3 7.8 7.6 5.1 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) tRNA-synt_1b PF00579.20 gi|284162734|ref|YP_003401357.1| - 7.5 5.5 9.7 8.3 5.4 6.7 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) Toprim PF01751.17 gi|284162734|ref|YP_003401357.1| - 7.7 6.5 8.7 6.6 6.7 5.0 1.7 1 1 1 2 2 2 0 Toprim domain LUC7 PF03194.10 gi|284162734|ref|YP_003401357.1| - 7.8 5.9 12.3 9.5 5.6 8.5 1.1 1 0 0 1 1 1 0 LUC7 N_terminus TMPIT PF07851.8 gi|284162734|ref|YP_003401357.1| - 9 5.2 10.0 12 4.8 6.9 1.3 1 0 0 1 1 1 0 TMPIT-like protein BCL_N PF04714.8 gi|284162734|ref|YP_003401357.1| - 9.7 5.8 7.4 2.3 7.8 0.6 2.8 2 1 1 3 3 3 0 BCL7, N-terminal conserver region V_ATPase_I PF01496.14 gi|284162735|ref|YP_003401358.1| - 3.3e-124 415.4 0.3 5.8e-124 414.6 0.2 1.4 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family TBPIP PF07106.8 gi|284162735|ref|YP_003401358.1| - 1e-05 25.1 4.4 0.034 13.6 0.1 2.2 2 0 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Snapin_Pallidin PF14712.1 gi|284162735|ref|YP_003401358.1| - 0.00017 21.8 2.6 0.031 14.5 0.1 2.6 3 0 0 3 3 2 1 Snapin/Pallidin DUF1202 PF06717.6 gi|284162735|ref|YP_003401358.1| - 0.006 15.8 1.8 0.2 10.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1202) Seryl_tRNA_N PF02403.17 gi|284162735|ref|YP_003401358.1| - 0.0066 16.4 8.5 0.15 12.0 0.5 2.3 2 0 0 2 2 2 2 Seryl-tRNA synthetase N-terminal domain FliJ PF02050.11 gi|284162735|ref|YP_003401358.1| - 0.025 14.6 2.5 1.7 8.6 0.3 2.2 2 0 0 2 2 2 0 Flagellar FliJ protein COG2 PF06148.6 gi|284162735|ref|YP_003401358.1| - 0.038 13.8 1.7 6.4 6.6 0.0 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 APG6 PF04111.7 gi|284162735|ref|YP_003401358.1| - 0.047 12.7 6.9 0.27 10.2 0.4 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 COG5 PF10392.4 gi|284162735|ref|YP_003401358.1| - 0.054 13.4 2.3 11 6.0 0.1 2.8 2 1 1 3 3 3 0 Golgi transport complex subunit 5 DUF1664 PF07889.7 gi|284162735|ref|YP_003401358.1| - 0.065 13.0 2.3 5.3 6.8 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.5 gi|284162735|ref|YP_003401358.1| - 0.071 13.2 1.9 6.3 6.9 0.1 2.2 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.7 gi|284162735|ref|YP_003401358.1| - 0.081 13.1 0.1 2.8 8.2 0.0 2.4 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Tektin PF03148.9 gi|284162735|ref|YP_003401358.1| - 0.11 10.9 6.7 0.85 8.0 0.2 2.1 2 0 0 2 2 2 0 Tektin family DUF4200 PF13863.1 gi|284162735|ref|YP_003401358.1| - 0.12 12.3 14.9 0.37 10.7 2.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) FlxA PF14282.1 gi|284162735|ref|YP_003401358.1| - 0.12 12.3 2.6 6.7 6.7 0.3 2.1 2 0 0 2 2 2 0 FlxA-like protein AAA_13 PF13166.1 gi|284162735|ref|YP_003401358.1| - 0.14 10.5 3.9 1.4 7.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain SBP_bac_7 PF03480.8 gi|284162735|ref|YP_003401358.1| - 0.15 11.1 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 ATG16 PF08614.6 gi|284162735|ref|YP_003401358.1| - 0.15 11.8 6.2 0.99 9.1 0.2 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Mnd1 PF03962.10 gi|284162735|ref|YP_003401358.1| - 0.17 11.5 4.2 2.1 7.9 0.2 2.2 2 0 0 2 2 2 0 Mnd1 family Apolipoprotein PF01442.13 gi|284162735|ref|YP_003401358.1| - 0.18 11.2 2.7 0.56 9.6 0.1 2.0 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain AAA_23 PF13476.1 gi|284162735|ref|YP_003401358.1| - 0.21 11.9 8.2 1.3 9.3 2.0 2.2 2 0 0 2 2 2 0 AAA domain DUF4140 PF13600.1 gi|284162735|ref|YP_003401358.1| - 0.25 11.8 5.7 7.5 7.0 0.1 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.15 gi|284162735|ref|YP_003401358.1| - 0.3 10.8 13.6 1.6 8.5 2.9 2.3 2 0 0 2 2 2 0 Prefoldin subunit Mod_r PF07200.8 gi|284162735|ref|YP_003401358.1| - 0.3 10.9 5.4 3.2 7.6 0.6 2.2 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Syntaxin PF00804.20 gi|284162735|ref|YP_003401358.1| - 0.39 10.9 4.4 8.9 6.5 0.8 2.6 3 0 0 3 3 2 0 Syntaxin Spc7 PF08317.6 gi|284162735|ref|YP_003401358.1| - 0.42 9.2 8.5 2.5 6.6 1.3 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF342 PF03961.8 gi|284162735|ref|YP_003401358.1| - 0.49 8.7 3.9 3.9 5.7 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF342) DivIC PF04977.10 gi|284162735|ref|YP_003401358.1| - 0.53 9.8 8.5 0.34 10.4 0.3 2.5 2 0 0 2 2 2 0 Septum formation initiator TSC22 PF01166.13 gi|284162735|ref|YP_003401358.1| - 0.55 10.2 5.7 0.15 12.0 0.3 2.4 2 0 0 2 2 2 0 TSC-22/dip/bun family Spc24 PF08286.6 gi|284162735|ref|YP_003401358.1| - 0.65 9.7 8.1 1.9 8.1 1.3 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF641 PF04859.7 gi|284162735|ref|YP_003401358.1| - 0.68 9.6 4.5 4.4 7.0 0.3 2.2 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) V-SNARE PF05008.10 gi|284162735|ref|YP_003401358.1| - 0.84 9.8 9.1 6.4 7.0 0.2 2.6 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Atg14 PF10186.4 gi|284162735|ref|YP_003401358.1| - 0.86 8.4 6.3 2.9 6.7 0.2 2.1 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF812 PF05667.6 gi|284162735|ref|YP_003401358.1| - 0.87 8.0 7.6 0.47 8.9 1.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) ADIP PF11559.3 gi|284162735|ref|YP_003401358.1| - 1.5 8.6 5.9 13 5.7 0.3 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Kinetocho_Slk19 PF12709.2 gi|284162735|ref|YP_003401358.1| - 1.5 8.9 9.3 1.3 9.1 0.8 2.4 2 0 0 2 2 2 0 Central kinetochore-associated DUF972 PF06156.8 gi|284162735|ref|YP_003401358.1| - 1.7 9.0 4.5 8.6 6.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Prefoldin PF02996.12 gi|284162735|ref|YP_003401358.1| - 1.9 8.1 7.0 3.9 7.1 0.8 2.4 2 0 0 2 2 2 0 Prefoldin subunit BLOC1_2 PF10046.4 gi|284162735|ref|YP_003401358.1| - 2.3 8.4 7.3 6.4 6.9 0.6 2.4 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.16 gi|284162735|ref|YP_003401358.1| - 2.5 8.4 6.4 1.1 9.5 0.6 2.2 2 0 0 2 2 2 0 Spectrin repeat Phage_Mu_Gam PF07352.7 gi|284162735|ref|YP_003401358.1| - 3.3 7.2 9.3 9.3 5.7 0.5 2.4 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein bZIP_1 PF00170.16 gi|284162735|ref|YP_003401358.1| - 4 7.4 9.8 3.5 7.6 0.4 2.4 2 0 0 2 2 2 0 bZIP transcription factor DUF16 PF01519.11 gi|284162735|ref|YP_003401358.1| - 5 7.3 7.3 8.8 6.6 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function DUF16 Ax_dynein_light PF10211.4 gi|284162735|ref|YP_003401358.1| - 7.1 6.4 7.9 2.9 7.6 0.8 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain DUF4337 PF14235.1 gi|284162735|ref|YP_003401358.1| - 7.5 6.3 8.7 6.2 6.6 0.1 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF4337) ATP-synt_C PF00137.16 gi|284162736|ref|YP_003401359.1| - 1.1e-15 57.2 19.9 1.4e-15 56.9 13.8 1.1 1 0 0 1 1 1 1 ATP synthase subunit C ATP-synt_C PF00137.16 gi|284162738|ref|YP_003401361.1| - 1.1e-15 57.2 19.9 1.4e-15 56.9 13.8 1.1 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|284162739|ref|YP_003401362.1| - 3.7e-43 147.1 22.7 4.4e-43 146.8 15.7 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF3552 PF12072.3 gi|284162739|ref|YP_003401362.1| - 6.3e-05 22.2 22.3 7.4e-05 22.0 15.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) GCN5L1 PF06320.8 gi|284162739|ref|YP_003401362.1| - 0.0018 18.0 10.6 0.0027 17.5 7.4 1.2 1 0 0 1 1 1 1 GCN5-like protein 1 (GCN5L1) HrpE PF06188.7 gi|284162739|ref|YP_003401362.1| - 0.0027 17.4 6.4 0.005 16.6 4.5 1.5 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E V-ATPase_G PF03179.10 gi|284162739|ref|YP_003401362.1| - 0.0034 17.6 20.8 0.0034 17.6 14.4 1.6 2 0 0 2 2 1 1 Vacuolar (H+)-ATPase G subunit DUF4007 PF13182.1 gi|284162739|ref|YP_003401362.1| - 0.0037 16.1 0.2 0.007 15.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4007) DUF966 PF06136.8 gi|284162739|ref|YP_003401362.1| - 0.0057 16.1 4.1 0.0071 15.8 2.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF966) DivIVA PF05103.8 gi|284162739|ref|YP_003401362.1| - 0.016 15.2 12.8 0.016 15.2 8.8 2.3 1 1 1 2 2 2 0 DivIVA protein OmpH PF03938.9 gi|284162739|ref|YP_003401362.1| - 0.054 13.4 18.8 0.074 12.9 13.1 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) RRN3 PF05327.6 gi|284162739|ref|YP_003401362.1| - 0.074 11.1 6.1 0.11 10.6 4.2 1.2 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 ATP-synt_B PF00430.13 gi|284162739|ref|YP_003401362.1| - 0.089 12.5 26.2 0.99 9.2 18.0 2.5 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) Peptidase_C58 PF03543.9 gi|284162739|ref|YP_003401362.1| - 0.2 11.1 2.9 0.19 11.2 1.2 1.5 1 1 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen DUF883 PF05957.8 gi|284162739|ref|YP_003401362.1| - 0.27 11.6 11.6 0.69 10.3 4.8 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Mitofilin PF09731.4 gi|284162739|ref|YP_003401362.1| - 0.31 9.6 19.4 0.44 9.1 13.5 1.4 1 0 0 1 1 1 0 Mitochondrial inner membrane protein EURL PF06937.6 gi|284162739|ref|YP_003401362.1| - 0.38 10.1 6.8 0.55 9.6 4.7 1.3 1 0 0 1 1 1 0 EURL protein RHD3 PF05879.7 gi|284162739|ref|YP_003401362.1| - 0.5 8.2 10.0 0.69 7.7 6.9 1.1 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) Apolipoprotein PF01442.13 gi|284162739|ref|YP_003401362.1| - 0.55 9.6 12.3 1.4 8.3 8.2 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain AIF-MLS PF14962.1 gi|284162739|ref|YP_003401362.1| - 0.65 9.6 9.5 0.93 9.1 6.6 1.3 1 0 0 1 1 1 0 Mitochondria Localisation Sequence Rotamase_2 PF13145.1 gi|284162739|ref|YP_003401362.1| - 1.2 9.7 11.0 2.4 8.7 7.0 1.8 1 1 1 2 2 2 0 PPIC-type PPIASE domain Activator-TraM PF11657.3 gi|284162739|ref|YP_003401362.1| - 1.2 8.5 14.0 4.4 6.7 9.7 1.9 1 1 0 1 1 1 0 Transcriptional activator TraM hDGE_amylase PF14701.1 gi|284162739|ref|YP_003401362.1| - 1.5 7.6 5.9 1.9 7.2 4.1 1.2 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Y_phosphatase3 PF13350.1 gi|284162739|ref|YP_003401362.1| - 1.6 9.0 4.5 2.4 8.3 3.1 1.2 1 0 0 1 1 1 0 Tyrosine phosphatase family DUF2968 PF11180.3 gi|284162739|ref|YP_003401362.1| - 1.7 7.9 12.1 2.6 7.3 8.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) HSP70 PF00012.15 gi|284162739|ref|YP_003401362.1| - 2.2 6.0 12.7 2.9 5.6 8.8 1.2 1 0 0 1 1 1 0 Hsp70 protein Rotamase PF00639.16 gi|284162739|ref|YP_003401362.1| - 4 8.2 8.8 5.1 7.9 4.9 2.1 2 1 1 3 3 2 0 PPIC-type PPIASE domain Sds3 PF08598.6 gi|284162739|ref|YP_003401362.1| - 8.3 5.8 17.1 2.4 7.6 9.4 1.9 2 0 0 2 2 2 0 Sds3-like DUF4065 PF13274.1 gi|284162739|ref|YP_003401362.1| - 8.9 7.0 7.9 1.1e+02 3.5 5.5 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) DUF965 PF06135.7 gi|284162739|ref|YP_003401362.1| - 9.5 6.3 7.7 7.4 6.6 0.1 3.5 2 1 1 4 4 3 0 Bacterial protein of unknown function (DUF965) vATP-synt_AC39 PF01992.11 gi|284162740|ref|YP_003401363.1| - 3.1e-90 302.7 3.9 3.5e-90 302.5 2.7 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.12 gi|284162741|ref|YP_003401364.1| - 1.4e-20 73.4 0.7 1.7e-20 73.2 0.5 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF43 PF01861.11 gi|284162741|ref|YP_003401364.1| - 0.028 13.4 0.6 0.031 13.2 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF43 ATP-synt_ab PF00006.20 gi|284162742|ref|YP_003401365.1| - 2.7e-97 324.4 0.0 3.7e-97 324.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|284162742|ref|YP_003401365.1| - 3.4e-19 69.4 0.6 9.2e-19 67.9 0.4 1.7 1 1 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|284162742|ref|YP_003401365.1| - 1.2e-14 54.2 2.2 1.2e-14 54.2 1.5 2.7 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.1 gi|284162742|ref|YP_003401365.1| - 0.00067 19.3 0.3 0.0039 16.8 0.0 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|284162742|ref|YP_003401365.1| - 0.0032 17.4 0.2 0.32 11.0 0.0 2.6 2 0 0 2 2 2 1 Peptidase family M23 AAA_22 PF13401.1 gi|284162742|ref|YP_003401365.1| - 0.069 13.2 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|284162743|ref|YP_003401366.1| - 7.6e-61 205.3 0.0 9.6e-61 205.0 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|284162743|ref|YP_003401366.1| - 1.1e-16 61.2 0.0 2.2e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|284162743|ref|YP_003401366.1| - 3e-12 46.5 0.5 5.5e-12 45.7 0.1 1.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|284162743|ref|YP_003401366.1| - 5.8e-06 26.1 0.1 1.7e-05 24.6 0.1 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.12 gi|284162744|ref|YP_003401367.1| - 8.8e-62 208.1 15.7 1e-61 207.9 10.9 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF948 PF06103.6 gi|284162744|ref|YP_003401367.1| - 0.034 14.0 3.1 0.54 10.1 0.1 2.6 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) PTPS PF01242.14 gi|284162744|ref|YP_003401367.1| - 0.047 13.3 0.5 0.48 10.1 0.1 2.1 2 0 0 2 2 2 0 6-pyruvoyl tetrahydropterin synthase Uds1 PF15456.1 gi|284162744|ref|YP_003401367.1| - 0.17 11.8 7.7 0.37 10.7 0.1 2.9 2 1 1 3 3 3 0 Up-regulated During Septation Ead_Ea22 PF13935.1 gi|284162744|ref|YP_003401367.1| - 0.63 10.3 5.3 0.71 10.1 1.4 2.1 2 0 0 2 2 2 0 Ead/Ea22-like protein DUF2299 PF10061.4 gi|284162745|ref|YP_003401368.1| - 1.4e-32 112.0 0.4 1.6e-32 111.8 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) tRNA_anti-codon PF01336.20 gi|284162746|ref|YP_003401369.1| - 0.005 16.6 2.4 0.0095 15.7 0.7 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain UBA_3 PF09288.5 gi|284162746|ref|YP_003401369.1| - 0.023 14.2 0.5 6.6 6.4 0.0 2.8 2 0 0 2 2 2 0 Fungal ubiquitin-associated domain RecR PF02132.10 gi|284162746|ref|YP_003401369.1| - 0.12 11.8 0.5 0.27 10.7 0.3 1.6 1 0 0 1 1 1 0 RecR protein FlaA PF04620.7 gi|284162747|ref|YP_003401370.1| - 0.1 11.9 0.2 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 Flagellar filament outer layer protein Flaa DUF1931 PF09123.6 gi|284162748|ref|YP_003401371.1| - 7.8e-44 148.9 1.9 8.7e-44 148.8 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) UbiD PF01977.11 gi|284162749|ref|YP_003401372.1| - 2.7e-97 325.8 0.0 3.2e-97 325.5 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF4250 PF14056.1 gi|284162749|ref|YP_003401372.1| - 0.0041 16.7 0.1 0.01 15.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4250) ArsD PF06953.6 gi|284162749|ref|YP_003401372.1| - 0.068 13.3 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Prefoldin_2 PF01920.15 gi|284162750|ref|YP_003401373.1| - 1.2e-27 95.7 20.0 1.3e-27 95.6 13.8 1.0 1 0 0 1 1 1 1 Prefoldin subunit Myosin_tail_1 PF01576.14 gi|284162750|ref|YP_003401373.1| - 6.1e-05 20.9 11.5 6.9e-05 20.7 8.0 1.0 1 0 0 1 1 1 1 Myosin tail Nsp1_C PF05064.8 gi|284162750|ref|YP_003401373.1| - 0.00015 21.3 12.2 0.0062 16.1 1.7 2.1 2 0 0 2 2 2 2 Nsp1-like C-terminal region BLOC1_2 PF10046.4 gi|284162750|ref|YP_003401373.1| - 0.0017 18.4 11.6 0.034 14.2 1.2 2.1 2 0 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Uds1 PF15456.1 gi|284162750|ref|YP_003401373.1| - 0.0018 18.2 7.7 0.0022 17.9 5.4 1.1 1 0 0 1 1 1 1 Up-regulated During Septation Cortex-I_coil PF09304.5 gi|284162750|ref|YP_003401373.1| - 0.0036 17.3 15.4 0.13 12.3 3.4 2.1 1 1 1 2 2 2 2 Cortexillin I, coiled coil CENP-F_leu_zip PF10473.4 gi|284162750|ref|YP_003401373.1| - 0.02 14.7 21.2 0.037 13.8 3.1 2.1 1 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4200 PF13863.1 gi|284162750|ref|YP_003401373.1| - 0.036 14.0 7.7 0.036 14.0 5.3 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) CALCOCO1 PF07888.6 gi|284162750|ref|YP_003401373.1| - 0.039 12.2 10.6 0.045 12.0 7.4 1.0 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF3610 PF12272.3 gi|284162750|ref|YP_003401373.1| - 0.042 13.5 1.1 0.056 13.0 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3610) Med29 PF11568.3 gi|284162750|ref|YP_003401373.1| - 0.044 13.8 3.6 0.077 13.0 2.5 1.5 1 1 0 1 1 1 0 Mediator complex subunit 29 TMP_2 PF06791.8 gi|284162750|ref|YP_003401373.1| - 0.047 13.3 1.6 0.067 12.7 0.4 1.7 1 1 1 2 2 2 0 Prophage tail length tape measure protein Tropomyosin_1 PF12718.2 gi|284162750|ref|YP_003401373.1| - 0.049 13.4 13.6 0.2 11.5 3.5 2.1 2 0 0 2 2 2 0 Tropomyosin like Enkurin PF13864.1 gi|284162750|ref|YP_003401373.1| - 0.06 13.5 0.7 0.06 13.5 0.5 2.8 2 1 0 2 2 2 0 Calmodulin-binding Peripla_BP_5 PF13433.1 gi|284162750|ref|YP_003401373.1| - 0.06 12.0 1.0 0.069 11.8 0.7 1.0 1 0 0 1 1 1 0 Periplasmic binding protein domain Pet127 PF08634.5 gi|284162750|ref|YP_003401373.1| - 0.099 11.7 0.8 0.11 11.6 0.5 1.1 1 0 0 1 1 1 0 Mitochondrial protein Pet127 EzrA PF06160.7 gi|284162750|ref|YP_003401373.1| - 0.12 10.5 13.5 0.19 9.8 9.3 1.4 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA Mod_r PF07200.8 gi|284162750|ref|YP_003401373.1| - 0.12 12.3 16.8 0.21 11.5 2.5 2.0 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein TA0956 PF11513.3 gi|284162750|ref|YP_003401373.1| - 0.12 12.4 1.3 0.23 11.5 0.9 1.6 1 1 0 1 1 1 0 Thermoplasma acidophilum protein TA0956 CDC37_N PF03234.9 gi|284162750|ref|YP_003401373.1| - 0.12 12.6 9.3 0.15 12.3 6.5 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding Prominin PF05478.6 gi|284162750|ref|YP_003401373.1| - 0.13 9.8 7.2 0.15 9.5 5.0 1.1 1 0 0 1 1 1 0 Prominin MutS_III PF05192.13 gi|284162750|ref|YP_003401373.1| - 0.13 11.9 1.7 0.16 11.7 1.1 1.1 1 0 0 1 1 1 0 MutS domain III CHASE3 PF05227.8 gi|284162750|ref|YP_003401373.1| - 0.14 11.8 9.3 0.27 10.9 0.5 2.1 2 0 0 2 2 2 0 CHASE3 domain IncA PF04156.9 gi|284162750|ref|YP_003401373.1| - 0.17 11.4 18.9 0.44 10.1 4.0 2.0 2 0 0 2 2 2 0 IncA protein WXG100 PF06013.7 gi|284162750|ref|YP_003401373.1| - 0.17 11.8 8.9 6 6.9 0.1 3.2 2 1 1 3 3 3 0 Proteins of 100 residues with WXG Fib_alpha PF08702.5 gi|284162750|ref|YP_003401373.1| - 0.18 11.9 12.2 0.24 11.5 8.4 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family WASH-7_mid PF14744.1 gi|284162750|ref|YP_003401373.1| - 0.18 10.6 5.4 0.2 10.4 3.7 1.0 1 0 0 1 1 1 0 WASH complex subunit 7 TPR_MLP1_2 PF07926.7 gi|284162750|ref|YP_003401373.1| - 0.18 11.5 18.8 0.46 10.2 13.1 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF342 PF03961.8 gi|284162750|ref|YP_003401373.1| - 0.19 10.1 10.5 0.24 9.7 7.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) FliD_N PF02465.13 gi|284162750|ref|YP_003401373.1| - 0.2 12.0 12.3 1.7 9.0 2.0 2.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Baculo_PEP_C PF04513.7 gi|284162750|ref|YP_003401373.1| - 0.21 11.3 10.5 3.1 7.6 7.2 2.1 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF489 PF04356.7 gi|284162750|ref|YP_003401373.1| - 0.22 11.1 5.5 0.28 10.7 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF489) KIP1 PF07765.7 gi|284162750|ref|YP_003401373.1| - 0.22 11.3 5.5 0.5 10.2 0.2 2.8 1 1 2 3 3 3 0 KIP1-like protein PAS_10 PF13596.1 gi|284162750|ref|YP_003401373.1| - 0.33 11.2 2.1 2 8.7 0.2 2.1 1 1 1 2 2 2 0 PAS domain SRP54 PF00448.17 gi|284162750|ref|YP_003401373.1| - 0.35 10.2 4.4 0.44 9.9 3.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF87 PF01935.12 gi|284162750|ref|YP_003401373.1| - 0.38 10.5 5.2 0.46 10.2 3.6 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF87 MCPsignal PF00015.16 gi|284162750|ref|YP_003401373.1| - 0.4 10.2 7.2 0.72 9.3 4.8 1.5 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Prefoldin PF02996.12 gi|284162750|ref|YP_003401373.1| - 0.4 10.3 16.5 0.64 9.6 3.3 2.5 1 1 1 2 2 2 0 Prefoldin subunit RE_AlwI PF09491.5 gi|284162750|ref|YP_003401373.1| - 0.44 8.9 7.6 0.51 8.7 5.3 1.0 1 0 0 1 1 1 0 AlwI restriction endonuclease DUF4164 PF13747.1 gi|284162750|ref|YP_003401373.1| - 0.59 10.2 12.0 1.7 8.8 7.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Syntaxin-6_N PF09177.6 gi|284162750|ref|YP_003401373.1| - 0.61 10.5 11.2 1.2 9.5 1.3 2.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF4618 PF15397.1 gi|284162750|ref|YP_003401373.1| - 0.69 9.1 17.4 1.8 7.8 12.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) HDV_ag PF01517.13 gi|284162750|ref|YP_003401373.1| - 0.71 9.5 7.6 0.79 9.3 0.2 2.0 1 1 1 2 2 2 0 Hepatitis delta virus delta antigen Atg14 PF10186.4 gi|284162750|ref|YP_003401373.1| - 0.72 8.7 11.6 1.1 8.1 8.0 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FlgN PF05130.7 gi|284162750|ref|YP_003401373.1| - 0.72 10.0 11.5 1.1 9.5 8.0 1.4 1 1 0 1 1 1 0 FlgN protein DUF2968 PF11180.3 gi|284162750|ref|YP_003401373.1| - 0.8 9.0 13.6 2.5 7.4 2.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) MinC_N PF05209.8 gi|284162750|ref|YP_003401373.1| - 0.9 9.3 7.1 2.4 7.9 2.9 2.0 1 1 1 2 2 2 0 Septum formation inhibitor MinC, N-terminal domain DUF972 PF06156.8 gi|284162750|ref|YP_003401373.1| - 1 9.7 14.6 5.4 7.4 5.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DASH_Dad2 PF08654.5 gi|284162750|ref|YP_003401373.1| - 1.1 9.2 10.2 0.47 10.4 2.3 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad2 DUF3391 PF11871.3 gi|284162750|ref|YP_003401373.1| - 1.2 9.3 10.4 2.1 8.5 1.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) Filament PF00038.16 gi|284162750|ref|YP_003401373.1| - 1.3 8.4 16.6 2.6 7.4 2.9 2.0 1 1 1 2 2 2 0 Intermediate filament protein UPF0449 PF15136.1 gi|284162750|ref|YP_003401373.1| - 1.4 9.1 8.9 0.49 10.6 2.4 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 Sec20 PF03908.8 gi|284162750|ref|YP_003401373.1| - 1.4 8.6 7.0 0.7 9.6 3.0 1.7 1 1 0 1 1 1 0 Sec20 ADIP PF11559.3 gi|284162750|ref|YP_003401373.1| - 1.5 8.7 16.9 0.22 11.3 3.7 2.0 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding PRP1_N PF06424.7 gi|284162750|ref|YP_003401373.1| - 1.5 9.1 5.4 1.9 8.7 3.8 1.2 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal Spc24 PF08286.6 gi|284162750|ref|YP_003401373.1| - 1.5 8.5 17.6 4.3 7.0 3.6 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Cauli_AT PF03233.8 gi|284162750|ref|YP_003401373.1| - 1.6 8.4 14.8 0.74 9.4 1.6 2.1 1 1 1 2 2 2 0 Aphid transmission protein HisKA_2 PF07568.7 gi|284162750|ref|YP_003401373.1| - 1.6 8.6 5.4 1.2 8.9 0.5 2.4 1 1 1 2 2 2 0 Histidine kinase Init_tRNA_PT PF04179.7 gi|284162750|ref|YP_003401373.1| - 1.6 7.4 6.7 2 7.2 4.7 1.0 1 0 0 1 1 1 0 Initiator tRNA phosphoribosyl transferase AMP-binding_C_2 PF14535.1 gi|284162750|ref|YP_003401373.1| - 1.7 8.7 8.8 63 3.7 6.1 2.4 1 1 0 1 1 1 0 AMP-binding enzyme C-terminal domain ORF6C PF10552.4 gi|284162750|ref|YP_003401373.1| - 1.7 8.3 12.4 2.8 7.6 3.6 2.2 1 1 1 2 2 2 0 ORF6C domain PEP-utilisers_N PF05524.8 gi|284162750|ref|YP_003401373.1| - 1.8 8.4 5.9 9.4 6.0 0.5 2.1 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal Snf7 PF03357.16 gi|284162750|ref|YP_003401373.1| - 1.8 7.8 16.2 2.1 7.7 2.8 2.1 2 0 0 2 2 2 0 Snf7 Terpene_synth PF01397.16 gi|284162750|ref|YP_003401373.1| - 1.9 7.8 7.8 1.6 8.1 0.8 2.4 1 1 0 2 2 2 0 Terpene synthase, N-terminal domain BCAS2 PF05700.6 gi|284162750|ref|YP_003401373.1| - 2 7.8 18.6 0.089 12.2 3.4 2.1 1 1 1 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) V_ATPase_I PF01496.14 gi|284162750|ref|YP_003401373.1| - 2.2 6.0 15.6 1.1 7.0 2.2 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Macoilin PF09726.4 gi|284162750|ref|YP_003401373.1| - 2.4 6.3 12.7 2.8 6.0 8.8 1.0 1 0 0 1 1 1 0 Transmembrane protein NuA4 PF09340.5 gi|284162750|ref|YP_003401373.1| - 2.5 7.8 9.0 0.25 11.0 0.3 2.6 2 1 1 3 3 3 0 Histone acetyltransferase subunit NuA4 HisKA_3 PF07730.8 gi|284162750|ref|YP_003401373.1| - 2.9 8.2 7.7 17 5.8 0.3 2.7 2 2 0 2 2 2 0 Histidine kinase HAUS6_N PF14661.1 gi|284162750|ref|YP_003401373.1| - 3.3 6.9 9.4 2 7.7 4.8 1.6 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus TMF_DNA_bd PF12329.3 gi|284162750|ref|YP_003401373.1| - 3.6 7.4 23.9 2.5 7.9 3.5 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Laminin_II PF06009.7 gi|284162750|ref|YP_003401373.1| - 3.6 7.3 13.9 35 4.1 9.5 2.0 1 1 0 1 1 1 0 Laminin Domain II DUF948 PF06103.6 gi|284162750|ref|YP_003401373.1| - 3.8 7.4 13.4 1.2 9.0 3.0 2.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1492 PF07374.6 gi|284162750|ref|YP_003401373.1| - 3.8 7.6 7.3 5.3 7.2 1.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) DegS PF05384.6 gi|284162750|ref|YP_003401373.1| - 3.9 6.6 15.2 9.7 5.3 7.5 2.0 1 1 1 2 2 2 0 Sensor protein DegS CorA PF01544.13 gi|284162750|ref|YP_003401373.1| - 4.1 6.3 6.5 31 3.4 4.5 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF724 PF05266.9 gi|284162750|ref|YP_003401373.1| - 4.9 6.7 12.7 7.1 6.1 8.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Acetyltransf_11 PF13720.1 gi|284162750|ref|YP_003401373.1| - 5 7.4 6.5 15 5.8 0.4 2.5 1 1 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FlaC_arch PF05377.6 gi|284162750|ref|YP_003401373.1| - 5.1 7.0 17.4 2.8 7.9 3.9 3.0 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) GAS PF13851.1 gi|284162750|ref|YP_003401373.1| - 5.1 6.2 19.3 16 4.6 13.4 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Peptidase_C65 PF10275.4 gi|284162750|ref|YP_003401373.1| - 5.4 6.2 8.2 40 3.4 5.8 1.9 1 1 0 1 1 1 0 Peptidase C65 Otubain DUF964 PF06133.6 gi|284162750|ref|YP_003401373.1| - 5.7 6.9 17.9 7 6.7 4.7 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF964) MRP-L28 PF09812.4 gi|284162750|ref|YP_003401373.1| - 6 6.6 11.4 8.4 6.1 1.4 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L28 DUF2802 PF10975.3 gi|284162750|ref|YP_003401373.1| - 6.4 6.6 14.3 12 5.7 0.7 3.3 2 2 0 2 2 2 0 Protein of unknown function (DUF2802) DUF3086 PF11285.3 gi|284162750|ref|YP_003401373.1| - 7.4 5.2 10.8 1.2 7.9 2.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) Transposase_22 PF02994.9 gi|284162750|ref|YP_003401373.1| - 7.4 4.9 16.4 1.5e+02 0.6 11.4 2.0 1 1 0 1 1 1 0 L1 transposable element bZIP_1 PF00170.16 gi|284162750|ref|YP_003401373.1| - 7.6 6.5 18.0 2.9 7.9 5.4 2.8 2 1 0 2 2 2 0 bZIP transcription factor NTR2 PF15458.1 gi|284162750|ref|YP_003401373.1| - 7.8 5.6 21.2 2.3 7.3 5.4 2.1 2 0 0 2 2 2 0 Nineteen complex-related protein 2 Spectrin PF00435.16 gi|284162750|ref|YP_003401373.1| - 8 6.8 12.8 43 4.4 8.9 2.0 1 1 0 1 1 1 0 Spectrin repeat FimP PF09766.4 gi|284162750|ref|YP_003401373.1| - 8 5.4 15.3 1.4 7.9 3.6 2.0 1 1 1 2 2 2 0 Fms-interacting protein Cep57_MT_bd PF06657.8 gi|284162750|ref|YP_003401373.1| - 8.3 6.4 12.9 0.85 9.6 2.2 2.7 1 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 SlyX PF04102.7 gi|284162750|ref|YP_003401373.1| - 8.5 6.8 16.0 0.76 10.1 1.5 2.6 2 1 0 2 2 2 0 SlyX LXG PF04740.7 gi|284162750|ref|YP_003401373.1| - 8.6 6.0 11.4 20 4.8 4.2 2.2 1 1 1 2 2 2 0 LXG domain of WXG superfamily Mnd1 PF03962.10 gi|284162750|ref|YP_003401373.1| - 9 5.9 14.6 6.8 6.3 1.9 1.8 1 1 1 2 2 2 0 Mnd1 family DUF2408 PF10303.4 gi|284162750|ref|YP_003401373.1| - 9.1 6.4 11.2 60 3.7 7.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) KfrA_N PF11740.3 gi|284162750|ref|YP_003401373.1| - 9.1 6.7 12.9 5.6 7.4 5.0 2.1 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term Hormone_1 PF00103.15 gi|284162750|ref|YP_003401373.1| - 9.3 5.5 8.8 2.6 7.3 1.2 2.0 1 1 1 2 2 2 0 Somatotropin hormone family DUF4510 PF14971.1 gi|284162750|ref|YP_003401373.1| - 9.6 6.3 10.7 11 6.1 1.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4510) AKNA PF12443.3 gi|284162750|ref|YP_003401373.1| - 9.8 6.2 11.7 1.4 8.9 1.3 2.4 1 1 2 3 3 3 0 AT-hook-containing transcription factor LUC7 PF03194.10 gi|284162750|ref|YP_003401373.1| - 9.9 5.6 13.5 15 5.0 7.8 1.8 1 1 1 2 2 2 0 LUC7 N_terminus Pcc1 PF09341.5 gi|284162751|ref|YP_003401374.1| - 2e-15 56.5 0.1 2.2e-15 56.4 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.13 gi|284162752|ref|YP_003401375.1| - 3e-10 40.0 0.0 3.9e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Brix domain DEAD_assoc PF08494.6 gi|284162753|ref|YP_003401376.1| - 1.1e-59 201.3 0.2 2.7e-59 200.0 0.2 1.8 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|284162753|ref|YP_003401376.1| - 2.7e-32 111.6 0.2 2.8e-31 108.3 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase LAGLIDADG_3 PF14528.1 gi|284162753|ref|YP_003401376.1| - 9.4e-20 70.6 12.5 1.4e-14 54.0 0.9 4.5 4 0 0 4 4 4 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|284162753|ref|YP_003401376.1| - 1.2e-15 57.1 0.0 7.8e-15 54.5 0.0 2.3 1 1 0 1 1 1 1 Intein splicing domain Helicase_C PF00271.26 gi|284162753|ref|YP_003401376.1| - 1.8e-09 37.3 0.1 3.4e-05 23.6 0.0 3.5 3 0 0 3 3 3 2 Helicase conserved C-terminal domain HTH_19 PF12844.2 gi|284162753|ref|YP_003401376.1| - 2.7e-09 36.9 4.0 0.0018 18.3 0.2 4.4 4 0 0 4 4 4 2 Helix-turn-helix domain HTH_3 PF01381.17 gi|284162753|ref|YP_003401376.1| - 3.3e-09 36.4 0.9 6.1e-05 22.7 0.0 3.3 2 1 0 2 2 2 2 Helix-turn-helix HTH_26 PF13443.1 gi|284162753|ref|YP_003401376.1| - 2.5e-06 27.6 0.1 3e-05 24.1 0.0 2.8 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain ResIII PF04851.10 gi|284162753|ref|YP_003401376.1| - 2.8e-05 24.0 0.0 0.0001 22.2 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PCI PF01399.22 gi|284162753|ref|YP_003401376.1| - 0.012 15.8 0.2 12 6.2 0.0 3.5 2 0 0 2 2 2 0 PCI domain Cro PF09048.5 gi|284162753|ref|YP_003401376.1| - 0.072 12.7 0.0 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 Cro BetR PF08667.5 gi|284162753|ref|YP_003401376.1| - 0.13 12.1 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 BetR domain DHquinase_I PF01487.10 gi|284162754|ref|YP_003401377.1| - 8.2e-40 136.8 0.0 1.4e-39 136.0 0.0 1.4 1 1 0 1 1 1 1 Type I 3-dehydroquinase Thioredoxin_3 PF13192.1 gi|284162755|ref|YP_003401378.1| - 2.5e-11 43.2 2.4 2.5e-11 43.2 1.7 2.2 2 0 0 2 2 2 1 Thioredoxin domain HEAT_2 PF13646.1 gi|284162755|ref|YP_003401378.1| - 2.5e-08 34.0 0.1 8.5e-08 32.3 0.1 1.9 1 1 1 2 2 2 1 HEAT repeats KaiB PF07689.7 gi|284162755|ref|YP_003401378.1| - 4.7e-05 22.7 0.1 0.00018 20.8 0.0 2.0 2 0 0 2 2 2 1 KaiB domain Thioredoxin_4 PF13462.1 gi|284162755|ref|YP_003401378.1| - 0.00075 19.5 0.7 0.028 14.4 0.0 2.7 2 1 1 3 3 3 1 Thioredoxin Glutaredoxin PF00462.19 gi|284162755|ref|YP_003401378.1| - 0.0034 17.3 1.1 0.0034 17.3 0.8 2.9 3 0 0 3 3 3 1 Glutaredoxin Cnd1 PF12717.2 gi|284162755|ref|YP_003401378.1| - 0.0071 16.2 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 non-SMC mitotic condensation complex subunit 1 Thioredoxin PF00085.15 gi|284162755|ref|YP_003401378.1| - 0.019 14.6 0.3 0.054 13.1 0.2 1.8 1 1 0 1 1 1 0 Thioredoxin Adaptin_N PF01602.15 gi|284162755|ref|YP_003401378.1| - 0.04 12.2 0.0 0.053 11.8 0.0 1.1 1 0 0 1 1 1 0 Adaptin N terminal region HEAT PF02985.17 gi|284162755|ref|YP_003401378.1| - 0.042 13.9 0.0 4.9 7.5 0.0 3.0 3 0 0 3 3 3 0 HEAT repeat API5 PF05918.6 gi|284162755|ref|YP_003401378.1| - 0.043 12.3 0.2 0.058 11.8 0.1 1.1 1 0 0 1 1 1 0 Apoptosis inhibitory protein 5 (API5) Arm PF00514.18 gi|284162755|ref|YP_003401378.1| - 0.089 12.6 0.0 25 4.9 0.0 2.9 3 0 0 3 3 3 0 Armadillo/beta-catenin-like repeat DUF836 PF05768.9 gi|284162755|ref|YP_003401378.1| - 0.11 12.8 0.1 0.26 11.5 0.1 1.7 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) DUF3892 PF13031.1 gi|284162755|ref|YP_003401378.1| - 0.17 12.3 0.8 1.3 9.5 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3892) Bactofilin PF04519.8 gi|284162756|ref|YP_003401379.1| - 3.4e-12 46.2 7.7 1.7e-07 31.1 0.9 2.6 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|284162756|ref|YP_003401379.1| - 7e-08 31.6 8.7 0.0037 16.7 0.0 6.3 4 2 2 6 6 6 4 Bacterial transferase hexapeptide (six repeats) PhosphMutase PF10143.4 gi|284162757|ref|YP_003401380.1| - 3.1e-62 209.2 0.0 4.7e-62 208.6 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|284162757|ref|YP_003401380.1| - 9.4e-57 192.2 0.0 1.1e-56 192.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|284162757|ref|YP_003401380.1| - 0.00033 20.0 0.0 0.003 16.9 0.0 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.15 gi|284162757|ref|YP_003401380.1| - 0.11 11.2 0.1 0.16 10.6 0.1 1.2 1 0 0 1 1 1 0 Alkaline phosphatase DUF1464 PF07318.7 gi|284162758|ref|YP_003401381.1| - 8.4e-75 251.7 0.0 1e-74 251.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Phage_integrase PF00589.17 gi|284162759|ref|YP_003401382.1| - 0.07 12.8 0.0 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 Phage integrase family PhrC_PhrF PF11131.3 gi|284162761|ref|YP_003401384.1| - 0.42 10.2 4.4 0.66 9.5 3.1 1.3 1 0 0 1 1 1 0 Rap-phr extracellular signalling Zn_ribbon_recom PF13408.1 gi|284162762|ref|YP_003401385.1| - 0.059 13.6 0.2 0.076 13.2 0.1 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C2HC_2 PF13913.1 gi|284162762|ref|YP_003401385.1| - 0.1 12.2 1.0 0.2 11.3 0.7 1.5 1 0 0 1 1 1 0 zinc-finger of a C2HC-type DUF4099 PF13351.1 gi|284162764|ref|YP_003401387.1| - 0.031 14.1 0.1 0.23 11.3 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF4099) Col_cuticle_N PF01484.12 gi|284162764|ref|YP_003401387.1| - 0.14 11.8 1.3 0.27 10.9 0.9 1.4 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain NAGLU PF05089.7 gi|284162764|ref|YP_003401387.1| - 0.15 10.8 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain Bac_export_3 PF01313.14 gi|284162764|ref|YP_003401387.1| - 1.4 8.6 10.3 0.055 13.1 3.2 1.6 2 0 0 2 2 2 0 Bacterial export proteins, family 3 ABC2_membrane_4 PF12730.2 gi|284162765|ref|YP_003401388.1| - 0.0062 15.7 13.7 0.0075 15.4 9.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF457 PF04307.9 gi|284162765|ref|YP_003401388.1| - 0.93 8.8 7.2 1.2 8.4 5.0 1.1 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4190 PF13828.1 gi|284162765|ref|YP_003401388.1| - 1.7 8.2 10.7 0.097 12.2 2.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4190) FtsX PF02687.16 gi|284162765|ref|YP_003401388.1| - 1.9 8.2 12.3 9 6.0 8.5 1.8 1 1 0 1 1 1 0 FtsX-like permease family Pox_D5 PF03288.11 gi|284162767|ref|YP_003401390.1| - 0.0075 16.5 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 Poxvirus D5 protein-like DUF3837 PF12939.2 gi|284162769|ref|YP_003401392.1| - 0.035 14.1 0.0 0.076 13.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) Cornichon PF03311.9 gi|284162770|ref|YP_003401393.1| - 0.069 13.2 0.6 0.08 13.0 0.4 1.1 1 0 0 1 1 1 0 Cornichon protein FemAB PF02388.11 gi|284162771|ref|YP_003401394.1| - 0.018 13.7 0.6 0.02 13.5 0.4 1.1 1 0 0 1 1 1 0 FemAB family TraD PF06412.6 gi|284162772|ref|YP_003401395.1| - 0.052 13.1 0.6 0.059 12.9 0.4 1.2 1 0 0 1 1 1 0 Conjugal transfer protein TraD YlqD PF11068.3 gi|284162774|ref|YP_003401397.1| - 0.00041 20.4 6.2 0.00084 19.3 4.3 1.5 1 0 0 1 1 1 1 YlqD protein PspA_IM30 PF04012.7 gi|284162774|ref|YP_003401397.1| - 0.0027 17.0 5.3 0.0061 15.9 3.6 1.5 1 0 0 1 1 1 1 PspA/IM30 family AAA_13 PF13166.1 gi|284162774|ref|YP_003401397.1| - 0.068 11.6 7.3 0.11 10.9 5.1 1.2 1 0 0 1 1 1 0 AAA domain ARD PF03079.9 gi|284162774|ref|YP_003401397.1| - 5.5 6.9 7.5 23 4.9 0.2 2.3 2 0 0 2 2 2 0 ARD/ARD' family MVIN PF03023.9 gi|284162775|ref|YP_003401398.1| - 0.052 11.9 1.1 0.061 11.7 0.8 1.0 1 0 0 1 1 1 0 MviN-like protein Laminin_G_3 PF13385.1 gi|284162776|ref|YP_003401399.1| - 8.4e-26 91.0 13.7 1.2e-25 90.5 2.5 3.2 3 0 0 3 3 3 2 Concanavalin A-like lectin/glucanases superfamily DUF4480 PF13715.1 gi|284162776|ref|YP_003401399.1| - 0.00038 20.4 0.0 0.0017 18.3 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) Sialidase PF02973.11 gi|284162776|ref|YP_003401399.1| - 0.0028 16.6 0.3 0.014 14.3 0.2 2.1 1 1 0 1 1 1 1 Sialidase, N-terminal domain CarboxypepD_reg PF13620.1 gi|284162776|ref|YP_003401399.1| - 0.01 15.8 4.3 0.06 13.4 0.0 3.6 3 1 0 3 3 3 0 Carboxypeptidase regulatory-like domain TraL PF07178.6 gi|284162778|ref|YP_003401401.1| - 7.4 6.6 8.2 1.7 8.6 2.2 2.1 1 1 1 2 2 2 0 TraL protein zf-AN1 PF01428.11 gi|284162780|ref|YP_003401403.1| - 3.8e-11 42.6 4.2 7.8e-11 41.6 2.9 1.5 1 0 0 1 1 1 1 AN1-like Zinc finger zf-CW PF07496.10 gi|284162780|ref|YP_003401403.1| - 0.057 13.1 4.5 0.12 12.1 3.1 1.5 1 0 0 1 1 1 0 CW-type Zinc Finger DUF35_N PF12172.3 gi|284162780|ref|YP_003401403.1| - 0.25 11.3 4.0 3.5 7.6 0.4 2.4 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Transp_Tc5_C PF04236.10 gi|284162780|ref|YP_003401403.1| - 0.83 9.9 6.7 6 7.1 4.6 2.2 1 1 0 1 1 1 0 Tc5 transposase C-terminal domain zf-BED PF02892.10 gi|284162780|ref|YP_003401403.1| - 1.5 8.5 5.5 6.8 6.5 0.9 2.5 2 0 0 2 2 2 0 BED zinc finger DUF553 PF04473.7 gi|284162781|ref|YP_003401404.1| - 1.7e-46 157.2 2.3 2.8e-46 156.5 1.6 1.4 1 0 0 1 1 1 1 Transglutaminase-like domain zf-AN1 PF01428.11 gi|284162781|ref|YP_003401404.1| - 2e-11 43.5 3.4 3.5e-11 42.7 2.3 1.3 1 0 0 1 1 1 1 AN1-like Zinc finger Transglut_core PF01841.14 gi|284162781|ref|YP_003401404.1| - 0.0041 17.3 0.0 0.052 13.7 0.0 2.3 1 1 0 1 1 1 1 Transglutaminase-like superfamily PLRV_ORF5 PF01690.12 gi|284162781|ref|YP_003401404.1| - 0.0072 15.5 0.6 0.011 14.9 0.4 1.2 1 0 0 1 1 1 1 Potato leaf roll virus readthrough protein FYVE PF01363.16 gi|284162781|ref|YP_003401404.1| - 0.024 14.5 0.8 0.046 13.6 0.5 1.5 1 0 0 1 1 1 0 FYVE zinc finger Peptidase_C93 PF06035.6 gi|284162781|ref|YP_003401404.1| - 0.049 13.0 0.2 0.099 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial transglutaminase-like cysteine proteinase BTLCP zf-HIT PF04438.11 gi|284162781|ref|YP_003401404.1| - 1.1 8.9 8.0 2.1 8.0 5.5 1.5 1 0 0 1 1 1 0 HIT zinc finger NUC202 PF08166.7 gi|284162783|ref|YP_003401406.1| - 0.00025 20.8 0.0 0.00044 20.0 0.0 1.3 1 0 0 1 1 1 1 NUC202 domain Proteasome PF00227.21 gi|284162783|ref|YP_003401406.1| - 0.059 12.6 0.3 0.18 11.0 0.1 1.9 2 1 0 2 2 2 0 Proteasome subunit PemK PF02452.12 gi|284162784|ref|YP_003401407.1| - 2.9e-18 66.0 0.3 3.3e-18 65.9 0.2 1.0 1 0 0 1 1 1 1 PemK-like protein DUF104 PF01954.11 gi|284162785|ref|YP_003401408.1| - 3.4e-12 46.2 3.6 4.1e-12 45.9 2.5 1.2 1 1 0 1 1 1 1 Protein of unknown function DUF104 Spore_IV_A PF09547.5 gi|284162786|ref|YP_003401409.1| - 0.025 13.2 1.2 0.036 12.7 0.8 1.2 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) DUF234 PF03008.9 gi|284162786|ref|YP_003401409.1| - 0.051 13.6 0.3 0.32 11.1 0.1 2.1 2 0 0 2 2 2 0 Archaea bacterial proteins of unknown function Gal4_dimer PF03902.8 gi|284162786|ref|YP_003401409.1| - 0.37 10.7 3.3 0.45 10.4 0.5 2.4 2 0 0 2 2 2 0 Gal4-like dimerisation domain zf-AN1 PF01428.11 gi|284162788|ref|YP_003401411.1| - 4.2e-11 42.5 6.2 4.2e-11 42.5 4.3 1.8 2 0 0 2 2 2 1 AN1-like Zinc finger DUF3267 PF11667.3 gi|284162788|ref|YP_003401411.1| - 0.019 15.1 4.2 0.019 15.1 2.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3267) Peptidase_M50 PF02163.17 gi|284162788|ref|YP_003401411.1| - 0.2 10.5 10.6 0.16 10.8 0.9 2.5 1 1 1 2 2 2 0 Peptidase family M50 Desulfoferrod_N PF06397.7 gi|284162788|ref|YP_003401411.1| - 1.9 7.9 5.5 20 4.7 1.9 2.3 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF4187 PF13821.1 gi|284162788|ref|YP_003401411.1| - 2.2 7.9 8.2 0.34 10.5 2.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4187) YcfA PF07927.7 gi|284162790|ref|YP_003401413.1| - 3.3e-07 30.1 0.7 7.7e-07 28.9 0.2 1.7 2 0 0 2 2 2 1 YcfA-like protein HTH_34 PF13601.1 gi|284162792|ref|YP_003401415.1| - 1.4e-11 44.2 0.1 5.1e-11 42.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|284162792|ref|YP_003401415.1| - 4.4e-11 42.2 0.0 9.4e-11 41.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|284162792|ref|YP_003401415.1| - 3.3e-09 36.2 0.0 7.4e-09 35.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284162792|ref|YP_003401415.1| - 5.8e-09 35.1 0.2 5.8e-09 35.1 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|284162792|ref|YP_003401415.1| - 1.7e-08 33.9 0.0 3e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.12 gi|284162792|ref|YP_003401415.1| - 2.9e-08 33.2 0.4 1.2e-07 31.2 0.0 2.1 2 0 0 2 2 2 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|284162792|ref|YP_003401415.1| - 2e-07 30.5 0.6 2e-07 30.5 0.4 2.3 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|284162792|ref|YP_003401415.1| - 2.6e-07 30.2 0.1 5.5e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|284162792|ref|YP_003401415.1| - 6.2e-07 29.1 0.8 1.2e-06 28.1 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|284162792|ref|YP_003401415.1| - 1.3e-06 28.6 1.8 1.4e-06 28.4 0.0 2.1 3 0 0 3 3 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|284162792|ref|YP_003401415.1| - 3.6e-06 26.6 0.2 8e-06 25.5 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|284162792|ref|YP_003401415.1| - 7.4e-05 22.4 0.4 0.0005 19.8 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|284162792|ref|YP_003401415.1| - 0.00018 21.5 0.6 0.00042 20.3 0.1 1.9 2 0 0 2 2 1 1 Transcriptional regulator FeoC PF09012.5 gi|284162792|ref|YP_003401415.1| - 0.00021 20.9 0.1 0.001 18.7 0.0 2.1 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|284162792|ref|YP_003401415.1| - 0.00036 20.0 0.0 0.00077 18.9 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.1 gi|284162792|ref|YP_003401415.1| - 0.00054 20.0 0.5 0.0019 18.3 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|284162792|ref|YP_003401415.1| - 0.0017 17.8 0.2 0.0017 17.8 0.1 2.3 2 1 0 2 2 1 1 LexA DNA binding domain Fe_dep_repress PF01325.14 gi|284162792|ref|YP_003401415.1| - 0.002 18.0 0.1 0.0053 16.6 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.11 gi|284162792|ref|YP_003401415.1| - 0.005 16.9 1.3 0.019 15.0 0.0 2.5 2 1 0 2 2 2 1 Penicillinase repressor EAP30 PF04157.11 gi|284162792|ref|YP_003401415.1| - 0.013 14.6 1.5 0.069 12.3 0.0 2.5 2 1 1 3 3 3 0 EAP30/Vps36 family GntR PF00392.16 gi|284162792|ref|YP_003401415.1| - 0.038 13.4 0.2 0.095 12.1 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|284162792|ref|YP_003401415.1| - 0.044 13.6 1.7 1.9 8.4 0.2 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) Imm41 PF15583.1 gi|284162792|ref|YP_003401415.1| - 0.057 13.2 1.6 2.7 7.8 0.0 2.4 2 0 0 2 2 2 0 Immunity protein 41 Replic_Relax PF13814.1 gi|284162792|ref|YP_003401415.1| - 0.065 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Replication-relaxation DUF552 PF04472.7 gi|284162792|ref|YP_003401415.1| - 0.08 12.8 0.0 1.9 8.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF552) HTH_11 PF08279.7 gi|284162792|ref|YP_003401415.1| - 0.098 12.3 0.0 0.24 11.0 0.0 1.7 1 0 0 1 1 1 0 HTH domain Crp PF00325.15 gi|284162792|ref|YP_003401415.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family AAA_23 PF13476.1 gi|284162792|ref|YP_003401415.1| - 0.31 11.3 5.9 0.1 12.9 2.3 1.5 1 1 1 2 2 2 0 AAA domain CENP-F_leu_zip PF10473.4 gi|284162792|ref|YP_003401415.1| - 0.37 10.6 9.0 0.084 12.7 2.8 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NusB PF01029.13 gi|284162792|ref|YP_003401415.1| - 0.5 10.3 3.6 1.7 8.5 0.7 2.3 2 0 0 2 2 2 0 NusB family DUF3166 PF11365.3 gi|284162792|ref|YP_003401415.1| - 0.87 10.0 5.8 0.51 10.8 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3166) DUF4200 PF13863.1 gi|284162792|ref|YP_003401415.1| - 6 6.8 11.7 0.49 10.3 4.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Fmp27_WPPW PF10359.4 gi|284162794|ref|YP_003401417.1| - 0.028 12.8 8.5 0.032 12.6 5.9 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Endonuc_Holl PF10107.4 gi|284162794|ref|YP_003401417.1| - 0.13 11.9 8.0 0.2 11.3 5.5 1.4 1 0 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase CPSF73-100_C PF11718.3 gi|284162794|ref|YP_003401417.1| - 0.15 11.3 4.0 0.21 10.8 2.8 1.3 1 0 0 1 1 1 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term RNase_H2-Ydr279 PF09468.5 gi|284162794|ref|YP_003401417.1| - 0.19 10.8 9.6 0.27 10.4 6.7 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) Ead_Ea22 PF13935.1 gi|284162794|ref|YP_003401417.1| - 0.21 11.9 9.1 0.39 11.0 6.3 1.4 1 0 0 1 1 1 0 Ead/Ea22-like protein KxDL PF10241.4 gi|284162794|ref|YP_003401417.1| - 0.3 10.9 10.4 0.42 10.5 5.2 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein Mitofilin PF09731.4 gi|284162794|ref|YP_003401417.1| - 0.4 9.2 19.2 0.56 8.7 13.3 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein APG6 PF04111.7 gi|284162794|ref|YP_003401417.1| - 0.98 8.4 17.1 1.4 7.8 11.8 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 OmpH PF03938.9 gi|284162794|ref|YP_003401417.1| - 1.9 8.4 13.3 3 7.7 9.2 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Exonuc_VII_L PF02601.10 gi|284162794|ref|YP_003401417.1| - 4.4 6.4 9.2 5.3 6.1 6.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF1664 PF07889.7 gi|284162794|ref|YP_003401417.1| - 4.5 7.0 6.6 4.1 7.2 3.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Atg14 PF10186.4 gi|284162794|ref|YP_003401417.1| - 6.1 5.6 15.5 8.5 5.2 10.7 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 V_ATPase_I PF01496.14 gi|284162794|ref|YP_003401417.1| - 6.3 4.5 12.1 6.8 4.4 8.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family CAF-1_p150 PF11600.3 gi|284162794|ref|YP_003401417.1| - 7.5 5.8 26.9 9.7 5.5 18.6 1.2 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal Barstar PF01337.13 gi|284162794|ref|YP_003401417.1| - 7.6 6.4 6.7 40 4.1 0.4 2.9 3 1 1 4 4 4 0 Barstar (barnase inhibitor) MCM PF00493.18 gi|284162795|ref|YP_003401418.1| - 7.9e-117 389.7 0.1 1.1e-116 389.3 0.1 1.2 1 0 0 1 1 1 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|284162795|ref|YP_003401418.1| - 1.2e-12 47.5 0.1 7.5e-10 38.3 0.0 2.6 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|284162795|ref|YP_003401418.1| - 2.5e-09 36.9 0.0 8.7e-09 35.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.5 gi|284162795|ref|YP_003401418.1| - 4.4e-05 23.3 0.7 0.0001 22.1 0.5 1.6 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|284162795|ref|YP_003401418.1| - 0.0015 18.2 0.3 0.0031 17.1 0.2 1.6 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF2072 PF09845.4 gi|284162795|ref|YP_003401418.1| - 0.0039 17.1 0.7 0.0039 17.1 0.5 2.1 2 0 0 2 2 2 1 Zn-ribbon containing protein (DUF2072) AAA PF00004.24 gi|284162795|ref|YP_003401418.1| - 0.018 15.2 0.2 0.074 13.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) P_proprotein PF01483.15 gi|284162795|ref|YP_003401418.1| - 0.034 13.9 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Proprotein convertase P-domain DNA_RNApol_7kD PF03604.8 gi|284162795|ref|YP_003401418.1| - 0.036 13.5 1.6 0.094 12.2 1.1 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_3 PF14369.1 gi|284162795|ref|YP_003401418.1| - 0.067 13.2 0.4 0.13 12.2 0.3 1.5 1 0 0 1 1 1 0 zinc-finger DUF4131 PF13567.1 gi|284162795|ref|YP_003401418.1| - 0.069 12.5 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) TF_Zn_Ribbon PF08271.7 gi|284162795|ref|YP_003401418.1| - 0.087 12.1 1.7 7.1 6.0 0.1 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|284162795|ref|YP_003401418.1| - 0.15 11.9 1.6 0.27 11.0 1.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|284162795|ref|YP_003401418.1| - 0.27 10.9 3.7 0.81 9.4 2.6 1.8 1 1 0 1 1 1 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|284162795|ref|YP_003401418.1| - 0.85 9.4 2.5 6.8 6.5 0.2 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|284162795|ref|YP_003401418.1| - 1.1 8.7 4.0 17 5.0 2.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|284162795|ref|YP_003401418.1| - 1.9 7.8 5.7 12 5.3 4.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF2762 PF10960.3 gi|284162799|ref|YP_003401422.1| - 0.00014 21.4 0.4 0.00024 20.7 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2762) Syndecan PF01034.15 gi|284162799|ref|YP_003401422.1| - 0.0076 15.8 0.3 0.014 14.9 0.2 1.5 1 0 0 1 1 1 1 Syndecan domain Peptidase_M56 PF05569.6 gi|284162799|ref|YP_003401422.1| - 0.011 14.7 0.0 0.012 14.6 0.0 1.0 1 0 0 1 1 1 0 BlaR1 peptidase M56 SieB PF14163.1 gi|284162799|ref|YP_003401422.1| - 0.033 13.7 0.2 0.046 13.2 0.1 1.1 1 0 0 1 1 1 0 Superinfection exclusion protein B RasGAP_C PF03836.10 gi|284162799|ref|YP_003401422.1| - 0.053 13.1 0.2 0.069 12.8 0.1 1.1 1 0 0 1 1 1 0 RasGAP C-terminus PspB PF06667.7 gi|284162799|ref|YP_003401422.1| - 0.082 12.8 0.1 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Phage shock protein B FtsL PF04999.8 gi|284162799|ref|YP_003401422.1| - 0.12 12.1 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Cell division protein FtsL EPSP_synthase PF00275.15 gi|284162799|ref|YP_003401422.1| - 0.14 10.5 0.0 0.17 10.2 0.0 1.0 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HTH_25 PF13413.1 gi|284162800|ref|YP_003401423.1| - 0.51 9.9 3.0 1.9 8.1 0.3 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain zf-BED PF02892.10 gi|284162801|ref|YP_003401424.1| - 0.0006 19.5 0.1 0.00077 19.1 0.1 1.2 1 0 0 1 1 1 1 BED zinc finger Rubredoxin PF00301.15 gi|284162801|ref|YP_003401424.1| - 0.12 12.2 0.1 0.2 11.5 0.1 1.5 1 1 0 1 1 1 0 Rubredoxin E6 PF00518.12 gi|284162802|ref|YP_003401425.1| - 0.077 13.3 2.0 0.14 12.5 0.8 1.8 1 1 1 2 2 2 0 Early Protein (E6) CM_2 PF01817.16 gi|284162803|ref|YP_003401426.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Chorismate mutase type II PTH2 PF01981.11 gi|284162804|ref|YP_003401427.1| - 7.5e-42 141.6 0.5 8.3e-42 141.5 0.4 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 AlaDh_PNT_N PF05222.10 gi|284162804|ref|YP_003401427.1| - 0.049 13.6 0.1 0.069 13.1 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, N-terminal domain DUF3354 PF11834.3 gi|284162804|ref|YP_003401427.1| - 0.058 13.0 0.5 0.14 11.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3354) HGTP_anticodon PF03129.15 gi|284162804|ref|YP_003401427.1| - 0.12 12.3 1.3 21 5.1 0.0 3.0 1 1 2 3 3 3 0 Anticodon binding domain DUF763 PF05559.6 gi|284162806|ref|YP_003401429.1| - 6.4e-116 386.7 0.0 4.9e-88 295.1 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF763) HHH PF00633.18 gi|284162806|ref|YP_003401429.1| - 0.003 17.1 0.2 0.014 15.0 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|284162806|ref|YP_003401429.1| - 0.028 14.5 0.1 3 8.0 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain HrcA_DNA-bdg PF03444.10 gi|284162807|ref|YP_003401430.1| - 3.6e-36 122.4 0.1 5.9e-36 121.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|284162807|ref|YP_003401430.1| - 1.1e-22 79.5 1.0 1.5e-13 50.2 0.3 2.5 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|284162807|ref|YP_003401430.1| - 1.3e-07 31.5 0.0 3e-07 30.4 0.0 1.6 1 1 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|284162807|ref|YP_003401430.1| - 2.8e-07 30.0 0.0 6.3e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|284162807|ref|YP_003401430.1| - 0.00081 19.0 0.0 0.0017 18.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|284162807|ref|YP_003401430.1| - 0.0014 18.1 0.1 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_5 PF01022.15 gi|284162807|ref|YP_003401430.1| - 0.0098 15.5 0.0 0.027 14.1 0.0 1.9 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|284162807|ref|YP_003401430.1| - 0.02 14.2 0.2 0.074 12.4 0.1 2.1 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|284162807|ref|YP_003401430.1| - 0.023 15.0 0.0 0.054 13.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|284162807|ref|YP_003401430.1| - 0.096 12.1 0.0 0.22 10.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Usp PF00582.21 gi|284162808|ref|YP_003401431.1| - 6.2e-31 107.4 3.7 2.2e-23 82.9 0.3 2.1 2 0 0 2 2 2 2 Universal stress protein family UDG PF03167.14 gi|284162809|ref|YP_003401432.1| - 2.9e-42 143.7 0.0 3.8e-42 143.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Receptor_IA-2 PF11548.3 gi|284162810|ref|YP_003401433.1| - 0.097 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein-tyrosine phosphatase receptor IA-2 ROK PF00480.15 gi|284162811|ref|YP_003401434.1| - 7.9e-28 97.4 0.2 1.3e-27 96.8 0.1 1.3 1 0 0 1 1 1 1 ROK family Hydant_A_N PF05378.8 gi|284162811|ref|YP_003401434.1| - 0.00096 18.6 0.2 0.0016 17.9 0.2 1.3 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|284162811|ref|YP_003401434.1| - 0.11 12.3 1.2 0.12 12.1 0.1 1.6 2 0 0 2 2 2 0 Cell division protein FtsA Glyco_trans_2_3 PF13632.1 gi|284162812|ref|YP_003401435.1| - 2.7e-18 66.3 8.6 2.4e-17 63.2 5.9 2.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.1 gi|284162812|ref|YP_003401435.1| - 1.2e-17 64.4 0.0 7.1e-17 61.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|284162812|ref|YP_003401435.1| - 4.6e-14 52.4 0.1 8.4e-14 51.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|284162812|ref|YP_003401435.1| - 1.1e-07 31.3 0.1 1.1e-06 28.0 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|284162812|ref|YP_003401435.1| - 3e-07 29.7 0.0 6.5e-05 22.1 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|284162812|ref|YP_003401435.1| - 0.0076 15.5 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family DUF1469 PF07332.6 gi|284162812|ref|YP_003401435.1| - 0.091 12.4 2.8 0.21 11.3 1.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) PrpR_N PF06506.6 gi|284162812|ref|YP_003401435.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Propionate catabolism activator TrmB PF01978.14 gi|284162813|ref|YP_003401436.1| - 1.7e-13 50.0 0.2 1.7e-13 50.0 0.1 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284162813|ref|YP_003401436.1| - 4.7e-11 41.9 0.1 1.1e-10 40.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284162813|ref|YP_003401436.1| - 3.3e-07 29.8 0.1 6e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Mga PF08280.6 gi|284162813|ref|YP_003401436.1| - 1e-06 28.3 0.0 2.3e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_AsnC-type PF13404.1 gi|284162813|ref|YP_003401436.1| - 1.4e-06 27.7 0.0 2.3e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|284162813|ref|YP_003401436.1| - 2.7e-06 26.9 0.2 5.5e-06 25.9 0.2 1.6 1 1 0 1 1 1 1 MarR family FaeA PF04703.7 gi|284162813|ref|YP_003401436.1| - 3.7e-06 27.0 0.0 5e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein TFIIE_alpha PF02002.12 gi|284162813|ref|YP_003401436.1| - 7.2e-06 25.4 4.1 9.1e-06 25.1 2.8 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_11 PF08279.7 gi|284162813|ref|YP_003401436.1| - 2.1e-05 24.0 0.2 2.1e-05 24.0 0.1 1.8 2 0 0 2 2 1 1 HTH domain LexA_DNA_bind PF01726.11 gi|284162813|ref|YP_003401436.1| - 2.2e-05 23.9 0.4 0.00011 21.6 0.1 2.2 2 0 0 2 2 2 1 LexA DNA binding domain HxlR PF01638.12 gi|284162813|ref|YP_003401436.1| - 2.9e-05 23.6 0.4 4.2e-05 23.0 0.3 1.4 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|284162813|ref|YP_003401436.1| - 0.00016 21.4 0.0 0.00029 20.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|284162813|ref|YP_003401436.1| - 0.00018 20.8 1.3 0.00044 19.6 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|284162813|ref|YP_003401436.1| - 0.00028 20.9 0.0 0.0005 20.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.7 gi|284162813|ref|YP_003401436.1| - 0.00033 20.1 0.1 0.0007 19.0 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|284162813|ref|YP_003401436.1| - 0.00039 20.0 0.2 0.00091 18.8 0.1 1.7 1 1 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|284162813|ref|YP_003401436.1| - 0.00044 20.2 1.4 0.00058 19.8 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain IF2_N PF04760.10 gi|284162813|ref|YP_003401436.1| - 0.00046 19.7 1.1 0.00071 19.1 0.1 1.9 2 0 0 2 2 1 1 Translation initiation factor IF-2, N-terminal region Fe_dep_repress PF01325.14 gi|284162813|ref|YP_003401436.1| - 0.00072 19.4 0.1 0.0016 18.3 0.0 1.6 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.5 gi|284162813|ref|YP_003401436.1| - 0.00094 18.8 0.1 0.0015 18.1 0.1 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_23 PF13384.1 gi|284162813|ref|YP_003401436.1| - 0.0014 18.1 0.1 0.0028 17.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|284162813|ref|YP_003401436.1| - 0.0016 18.6 0.1 0.0025 17.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_IclR PF09339.5 gi|284162813|ref|YP_003401436.1| - 0.0054 16.2 0.0 0.0087 15.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_9 PF08221.6 gi|284162813|ref|YP_003401436.1| - 0.007 16.2 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284162813|ref|YP_003401436.1| - 0.012 15.3 0.0 0.031 14.0 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_7 PF02796.10 gi|284162813|ref|YP_003401436.1| - 0.018 14.9 0.2 0.088 12.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF2042 PF09743.4 gi|284162813|ref|YP_003401436.1| - 0.018 14.3 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) EAP30 PF04157.11 gi|284162813|ref|YP_003401436.1| - 0.019 14.1 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_8 PF02954.14 gi|284162813|ref|YP_003401436.1| - 0.026 14.0 0.0 0.063 12.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_38 PF13936.1 gi|284162813|ref|YP_003401436.1| - 0.028 13.9 0.2 0.098 12.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2582 PF10771.4 gi|284162813|ref|YP_003401436.1| - 0.044 13.6 0.1 0.11 12.3 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2582) RPA_C PF08784.6 gi|284162813|ref|YP_003401436.1| - 0.069 13.5 0.0 0.14 12.5 0.0 1.5 1 1 0 1 1 1 0 Replication protein A C terminal KorB PF08535.5 gi|284162813|ref|YP_003401436.1| - 0.086 13.0 0.0 0.16 12.1 0.0 1.6 1 1 0 1 1 1 0 KorB domain GerE PF00196.14 gi|284162813|ref|YP_003401436.1| - 0.095 12.0 0.2 0.59 9.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family B-block_TFIIIC PF04182.7 gi|284162813|ref|YP_003401436.1| - 0.097 12.5 0.0 0.14 12.0 0.0 1.4 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC Phage_terminase PF10668.4 gi|284162813|ref|YP_003401436.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Phage terminase small subunit ANT PF03374.9 gi|284162813|ref|YP_003401436.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_27 PF13463.1 gi|284162813|ref|YP_003401436.1| - 0.11 12.7 0.2 0.43 10.9 0.1 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|284162813|ref|YP_003401436.1| - 0.14 11.3 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.7 gi|284162813|ref|YP_003401436.1| - 0.15 11.7 0.6 0.41 10.2 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_12 PF08461.5 gi|284162813|ref|YP_003401436.1| - 0.31 10.8 4.6 0.1 12.3 1.1 1.8 2 1 0 2 2 1 0 Ribonuclease R winged-helix domain Glycos_transf_1 PF00534.15 gi|284162814|ref|YP_003401437.1| - 6.9e-30 103.7 0.0 1.5e-29 102.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284162814|ref|YP_003401437.1| - 1.8e-14 53.8 2.1 1.5e-13 50.8 0.6 2.1 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|284162814|ref|YP_003401437.1| - 5.3e-13 49.2 0.0 1e-12 48.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|284162814|ref|YP_003401437.1| - 1.5e-11 44.4 0.0 2.8e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|284162814|ref|YP_003401437.1| - 2e-06 28.0 0.0 3.7e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain PIGA PF08288.7 gi|284162814|ref|YP_003401437.1| - 0.0041 17.4 0.3 0.0096 16.2 0.2 1.7 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_transf_5 PF08323.6 gi|284162814|ref|YP_003401437.1| - 0.042 13.3 0.4 0.31 10.4 0.1 2.4 2 1 0 2 2 2 0 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|284162814|ref|YP_003401437.1| - 0.062 13.1 2.9 0.13 12.1 0.6 2.1 1 1 1 2 2 2 0 Glycosyl transferase 4-like UbiA PF01040.13 gi|284162815|ref|YP_003401438.1| - 5.2e-27 94.6 13.2 6.6e-27 94.3 9.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Flagellar_rod PF05149.7 gi|284162816|ref|YP_003401439.1| - 0.00037 19.7 0.1 0.00041 19.6 0.1 1.0 1 0 0 1 1 1 1 Paraflagellar rod protein Sugarporin_N PF11471.3 gi|284162816|ref|YP_003401439.1| - 1.6 8.4 4.3 2.3 7.9 3.0 1.5 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension HEAT_2 PF13646.1 gi|284162817|ref|YP_003401440.1| - 1.8e-33 114.6 7.6 1.7e-25 89.0 2.3 1.9 1 1 1 2 2 2 2 HEAT repeats HEAT PF02985.17 gi|284162817|ref|YP_003401440.1| - 5.8e-19 66.4 0.1 7.8e-07 28.6 0.0 3.3 3 0 0 3 3 3 3 HEAT repeat HEAT_PBS PF03130.11 gi|284162817|ref|YP_003401440.1| - 3.5e-18 64.1 7.4 1.1e-07 31.6 0.1 3.8 4 0 0 4 4 4 2 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|284162817|ref|YP_003401440.1| - 5.2e-14 52.2 3.6 7.6e-07 29.4 0.1 3.6 2 2 2 4 4 4 3 HEAT-like repeat Arm PF00514.18 gi|284162817|ref|YP_003401440.1| - 8.6e-11 41.2 0.0 0.0021 17.7 0.0 3.3 2 1 1 3 3 3 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|284162817|ref|YP_003401440.1| - 2.6e-05 22.7 0.1 3.3e-05 22.4 0.1 1.1 1 0 0 1 1 1 1 Adaptin N terminal region Cohesin_HEAT PF12765.2 gi|284162817|ref|YP_003401440.1| - 0.00015 21.5 0.4 0.00092 19.1 0.1 2.2 2 0 0 2 2 2 1 HEAT repeat associated with sister chromatid cohesion Aconitase_B_N PF11791.3 gi|284162817|ref|YP_003401440.1| - 0.00096 18.9 0.3 1.7 8.4 0.0 2.9 1 1 0 2 2 2 2 Aconitate B N-terminal domain Cnd1 PF12717.2 gi|284162817|ref|YP_003401440.1| - 0.0013 18.6 0.1 0.12 12.1 0.0 2.7 1 1 1 2 2 2 1 non-SMC mitotic condensation complex subunit 1 ALF PF03752.8 gi|284162817|ref|YP_003401440.1| - 0.0017 18.1 2.3 0.0055 16.5 0.0 2.4 2 0 0 2 2 2 1 Short repeats of unknown function Vac14_Fab1_bd PF12755.2 gi|284162817|ref|YP_003401440.1| - 0.014 15.7 0.1 14 6.1 0.0 3.1 1 1 1 2 2 2 0 Vacuolar 14 Fab1-binding region DUF3385 PF11865.3 gi|284162817|ref|YP_003401440.1| - 0.023 14.6 0.0 1.6 8.6 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3385) DUF1652 PF07865.6 gi|284162817|ref|YP_003401440.1| - 0.035 13.6 0.2 22 4.7 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1652) RasGEF_N_2 PF14663.1 gi|284162817|ref|YP_003401440.1| - 0.058 13.3 0.1 0.69 9.8 0.0 2.4 1 1 2 3 3 3 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain RuvA_C PF07499.8 gi|284162817|ref|YP_003401440.1| - 0.24 11.5 4.9 2.6 8.2 0.1 3.4 2 1 0 2 2 2 0 RuvA, C-terminal domain Radical_SAM PF04055.16 gi|284162819|ref|YP_003401442.1| - 1.7e-16 60.8 1.3 9.2e-15 55.2 0.6 2.3 2 0 0 2 2 2 2 Radical SAM superfamily B12-binding PF02310.14 gi|284162819|ref|YP_003401442.1| - 1.1e-07 31.7 0.0 2.5e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain GATase_3 PF07685.9 gi|284162820|ref|YP_003401443.1| - 2e-33 115.2 0.0 3.5e-33 114.4 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|284162820|ref|YP_003401443.1| - 1.8e-26 92.7 0.1 3.4e-26 91.8 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|284162820|ref|YP_003401443.1| - 4.3e-18 65.6 3.3 1.3e-12 47.7 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|284162820|ref|YP_003401443.1| - 1.9e-05 24.9 0.1 0.00017 21.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain SNO PF01174.14 gi|284162820|ref|YP_003401443.1| - 0.00037 20.1 0.0 0.00077 19.1 0.0 1.5 1 0 0 1 1 1 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.19 gi|284162820|ref|YP_003401443.1| - 0.0089 15.4 0.0 0.019 14.4 0.0 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family MobB PF03205.9 gi|284162820|ref|YP_003401443.1| - 0.041 13.5 0.3 0.51 10.0 0.1 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF1611 PF07755.6 gi|284162820|ref|YP_003401443.1| - 0.047 12.3 0.1 0.5 8.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) AAA_31 PF13614.1 gi|284162820|ref|YP_003401443.1| - 0.092 12.6 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF4154 PF13689.1 gi|284162820|ref|YP_003401443.1| - 0.1 12.2 0.0 0.3 10.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4154) DUF4066 PF13278.1 gi|284162820|ref|YP_003401443.1| - 0.2 10.8 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase DsrC PF04358.8 gi|284162821|ref|YP_003401444.1| - 3.9e-44 149.3 0.0 4.4e-44 149.2 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein DUF4523 PF15023.1 gi|284162821|ref|YP_003401444.1| - 0.02 14.4 0.0 0.025 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4523) Fer4_11 PF13247.1 gi|284162822|ref|YP_003401445.1| - 9.1e-23 80.0 16.2 2.7e-15 56.0 3.2 3.1 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284162822|ref|YP_003401445.1| - 1.3e-13 51.0 22.7 9.9e-09 35.4 4.4 3.5 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284162822|ref|YP_003401445.1| - 1.2e-10 41.4 25.0 6.8e-08 32.6 4.2 3.5 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284162822|ref|YP_003401445.1| - 6.7e-09 35.4 17.6 1.8e-06 27.6 2.8 3.2 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284162822|ref|YP_003401445.1| - 6.7e-08 32.5 35.0 0.0094 16.4 3.1 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|284162822|ref|YP_003401445.1| - 1.1e-07 31.0 10.0 2.2e-07 30.1 1.5 5.5 7 0 0 7 7 6 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284162822|ref|YP_003401445.1| - 1.6e-06 27.7 33.8 2e-05 24.2 2.6 5.2 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|284162822|ref|YP_003401445.1| - 4e-06 26.4 11.5 8.1e-06 25.4 1.8 5.0 5 1 0 5 5 5 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284162822|ref|YP_003401445.1| - 0.00021 21.3 2.1 0.00021 21.3 1.5 4.5 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_17 PF13534.1 gi|284162822|ref|YP_003401445.1| - 0.02 15.2 5.1 0.02 15.2 3.6 4.6 4 2 0 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284162822|ref|YP_003401445.1| - 0.022 15.2 0.4 0.022 15.2 0.2 3.4 4 0 0 4 4 3 0 4Fe-4S single cluster domain TAT_signal PF10518.4 gi|284162822|ref|YP_003401445.1| - 0.14 12.2 1.1 0.23 11.5 0.8 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_16 PF13484.1 gi|284162822|ref|YP_003401445.1| - 0.15 12.8 25.0 0.21 12.3 1.6 4.8 2 1 4 6 6 5 0 4Fe-4S double cluster binding domain Metallothio_Pro PF02069.11 gi|284162822|ref|YP_003401445.1| - 0.29 10.9 0.2 0.29 10.9 0.1 3.4 4 0 0 4 4 3 0 Prokaryotic metallothionein Fer4_8 PF13183.1 gi|284162822|ref|YP_003401445.1| - 0.51 10.4 27.6 0.095 12.7 6.8 4.0 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284162822|ref|YP_003401445.1| - 1.6 8.6 23.2 0.063 13.1 7.4 3.7 4 1 0 4 4 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284162822|ref|YP_003401445.1| - 9.7 6.7 19.9 3.5e+02 1.6 0.0 4.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain NrfD PF03916.9 gi|284162823|ref|YP_003401446.1| - 1.1e-48 166.2 25.8 3.1e-48 164.8 17.9 1.7 1 1 0 1 1 1 1 Polysulphide reductase, NrfD Nitrate_red_gam PF02665.9 gi|284162824|ref|YP_003401447.1| - 5.9e-19 68.3 18.6 2.7e-16 59.5 7.2 2.2 2 0 0 2 2 2 2 Nitrate reductase gamma subunit Fer4_17 PF13534.1 gi|284162825|ref|YP_003401448.1| - 3.9e-08 33.5 0.7 3.9e-08 33.5 0.5 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284162825|ref|YP_003401448.1| - 5.3e-08 32.7 1.9 1.2e-07 31.6 1.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284162825|ref|YP_003401448.1| - 2.4e-07 31.0 0.6 0.015 15.6 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284162825|ref|YP_003401448.1| - 6.2e-07 29.7 0.8 1.7e-06 28.3 0.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|284162825|ref|YP_003401448.1| - 1e-05 25.4 0.1 0.0001 22.2 0.1 2.3 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.1 gi|284162825|ref|YP_003401448.1| - 4.4e-05 23.1 2.8 0.11 12.2 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284162825|ref|YP_003401448.1| - 0.00014 21.2 9.6 0.045 13.3 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|284162825|ref|YP_003401448.1| - 0.00054 20.1 7.2 0.028 14.6 5.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284162825|ref|YP_003401448.1| - 0.0063 16.3 6.9 0.25 11.3 1.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284162825|ref|YP_003401448.1| - 0.0098 16.6 4.6 0.054 14.2 3.2 2.3 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|284162825|ref|YP_003401448.1| - 0.028 14.2 11.5 0.28 11.1 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284162825|ref|YP_003401448.1| - 0.03 14.6 11.4 0.92 10.0 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284162825|ref|YP_003401448.1| - 0.046 13.5 3.4 2.1 8.2 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284162825|ref|YP_003401448.1| - 0.16 12.6 12.2 0.64 10.7 0.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Claudin_2 PF13903.1 gi|284162826|ref|YP_003401449.1| - 0.049 13.3 0.0 0.071 12.8 0.0 1.4 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Cytochrome_C7 PF14522.1 gi|284162826|ref|YP_003401449.1| - 0.68 9.6 8.7 22 4.7 6.1 2.4 1 1 0 1 1 1 0 Cytochrome c7 Thg1 PF04446.7 gi|284162827|ref|YP_003401450.1| - 3.9e-29 100.9 1.1 7.5e-29 100.0 0.4 1.7 1 1 1 2 2 2 1 tRNAHis guanylyltransferase Thg1C PF14413.1 gi|284162827|ref|YP_003401450.1| - 1.6e-28 98.8 0.7 2.7e-28 98.0 0.5 1.3 1 0 0 1 1 1 1 Thg1 C terminal domain PRC PF05239.11 gi|284162828|ref|YP_003401451.1| - 2.8e-16 59.1 3.1 3.2e-16 58.9 2.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain Ribosomal_L1 PF00687.16 gi|284162829|ref|YP_003401452.1| - 3.5e-46 157.3 0.2 4.1e-46 157.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|284162830|ref|YP_003401453.1| - 4.5e-28 97.1 0.3 4.5e-28 97.1 0.2 2.1 2 0 0 2 2 2 1 Ribosomal protein L10 PBP_sp32 PF07222.7 gi|284162830|ref|YP_003401453.1| - 0.59 9.2 5.7 0.98 8.5 4.0 1.3 1 0 0 1 1 1 0 Proacrosin binding protein sp32 ATP-synt_E PF05680.7 gi|284162830|ref|YP_003401453.1| - 1.6 8.7 9.2 0.74 9.8 4.3 1.9 2 0 0 2 2 2 0 ATP synthase E chain Ribosomal_60s PF00428.14 gi|284162830|ref|YP_003401453.1| - 7.7 6.9 20.8 40 4.6 14.4 2.3 1 1 0 1 1 1 0 60s Acidic ribosomal protein Ribosomal_60s PF00428.14 gi|284162831|ref|YP_003401454.1| - 9e-20 70.8 24.2 1.1e-19 70.6 16.8 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.6 gi|284162831|ref|YP_003401454.1| - 0.032 12.3 0.4 0.036 12.1 0.3 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Sigma70_ner PF04546.8 gi|284162831|ref|YP_003401454.1| - 0.12 11.9 6.5 0.14 11.7 4.5 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF3549 PF12069.3 gi|284162831|ref|YP_003401454.1| - 0.17 10.5 2.5 0.19 10.4 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3549) ERAP1_C PF11838.3 gi|284162831|ref|YP_003401454.1| - 0.24 10.5 2.3 0.26 10.4 1.6 1.0 1 0 0 1 1 1 0 ERAP1-like C-terminal domain PepSY_2 PF13670.1 gi|284162831|ref|YP_003401454.1| - 0.29 11.0 13.8 0.49 10.3 2.1 2.2 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain BSP_II PF05432.6 gi|284162831|ref|YP_003401454.1| - 3.6 6.7 11.2 4.2 6.5 7.7 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) Archease PF01951.11 gi|284162832|ref|YP_003401455.1| - 7.8e-30 103.6 0.1 8.7e-30 103.4 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) CTP_transf_2 PF01467.21 gi|284162833|ref|YP_003401456.1| - 1.4e-16 60.8 0.1 2.9e-16 59.8 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|284162833|ref|YP_003401456.1| - 0.0049 16.5 0.0 0.0076 15.8 0.0 1.4 1 0 0 1 1 1 1 FAD synthetase Ribosomal_S27e PF01667.12 gi|284162834|ref|YP_003401457.1| - 1.2e-26 91.9 2.6 1.3e-26 91.8 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 DUF2387 PF09526.5 gi|284162834|ref|YP_003401457.1| - 0.0027 17.5 0.5 0.0031 17.3 0.4 1.1 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) IBR PF01485.16 gi|284162834|ref|YP_003401457.1| - 0.0094 15.8 0.2 0.01 15.6 0.2 1.1 1 0 0 1 1 1 1 IBR domain Sgf11 PF08209.6 gi|284162834|ref|YP_003401457.1| - 0.013 14.8 1.8 0.29 10.4 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) TF_Zn_Ribbon PF08271.7 gi|284162834|ref|YP_003401457.1| - 0.019 14.2 2.5 0.033 13.4 1.8 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|284162834|ref|YP_003401457.1| - 0.056 12.9 1.3 0.47 9.9 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF2614 PF11023.3 gi|284162834|ref|YP_003401457.1| - 0.065 13.0 0.5 0.069 12.9 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) zf-FPG_IleRS PF06827.9 gi|284162834|ref|YP_003401457.1| - 0.083 12.5 1.1 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF2180 PF09947.4 gi|284162834|ref|YP_003401457.1| - 0.14 11.9 0.9 8.7 6.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) Zn_Tnp_IS1595 PF12760.2 gi|284162834|ref|YP_003401457.1| - 0.14 11.9 0.7 0.31 10.8 0.6 1.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|284162834|ref|YP_003401457.1| - 0.18 11.6 1.3 0.25 11.1 0.9 1.2 1 0 0 1 1 1 0 Zinc-ribbon zf-ribbon_3 PF13248.1 gi|284162834|ref|YP_003401457.1| - 0.21 10.8 2.8 2.3 7.5 1.9 2.1 1 1 1 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|284162834|ref|YP_003401457.1| - 0.35 10.5 2.3 0.87 9.3 1.6 1.6 1 1 0 1 1 1 0 Adenylate kinase, active site lid Ribosomal_L44 PF00935.14 gi|284162835|ref|YP_003401458.1| - 1e-27 95.9 7.3 1.4e-27 95.4 5.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.15 gi|284162835|ref|YP_003401458.1| - 0.00071 19.7 5.0 0.005 17.0 1.0 2.5 2 0 0 2 2 2 1 Ribosomal protein L33 NOB1_Zn_bind PF08772.6 gi|284162835|ref|YP_003401458.1| - 0.0012 18.5 0.6 0.0012 18.5 0.4 2.0 2 0 0 2 2 2 1 Nin one binding (NOB1) Zn-ribbon like Lar_restr_allev PF14354.1 gi|284162835|ref|YP_003401458.1| - 0.015 15.5 1.0 0.031 14.5 0.7 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar C1_4 PF07975.7 gi|284162835|ref|YP_003401458.1| - 0.05 13.6 1.2 0.11 12.5 0.1 2.0 2 0 0 2 2 2 0 TFIIH C1-like domain DUF2296 PF10058.4 gi|284162835|ref|YP_003401458.1| - 0.058 13.1 1.5 5.7 6.7 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1595 PF12760.2 gi|284162835|ref|YP_003401458.1| - 0.072 12.9 5.0 1.7 8.5 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|284162835|ref|YP_003401458.1| - 0.073 12.5 5.1 3.1 7.3 0.2 2.6 2 0 0 2 2 2 0 InsA N-terminal domain zf-ribbon_3 PF13248.1 gi|284162835|ref|YP_003401458.1| - 0.13 11.5 0.3 0.13 11.5 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-AN1 PF01428.11 gi|284162835|ref|YP_003401458.1| - 0.16 11.8 5.1 1 9.3 0.7 2.3 2 0 0 2 2 2 0 AN1-like Zinc finger Zn-ribbon_8 PF09723.5 gi|284162835|ref|YP_003401458.1| - 0.4 10.6 4.7 3.1 7.8 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-B_box PF00643.19 gi|284162835|ref|YP_003401458.1| - 0.47 10.4 4.8 2 8.3 0.3 2.2 2 0 0 2 2 2 0 B-box zinc finger Nudix_N_2 PF14803.1 gi|284162835|ref|YP_003401458.1| - 0.7 9.6 6.8 2.4 7.9 0.2 2.6 2 1 0 2 2 2 0 Nudix N-terminal Tnp_zf-ribbon_2 PF13842.1 gi|284162835|ref|YP_003401458.1| - 1.9 8.9 11.8 6.2 7.3 4.1 2.4 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zinc_ribbon_2 PF13240.1 gi|284162835|ref|YP_003401458.1| - 2.8 7.5 8.9 0.32 10.5 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|284162835|ref|YP_003401458.1| - 3.3 7.5 6.7 14 5.5 4.6 1.9 1 1 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|284162835|ref|YP_003401458.1| - 4.6 7.0 7.7 13 5.5 1.7 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like GFA PF04828.9 gi|284162835|ref|YP_003401458.1| - 5.7 6.9 6.7 1.7 8.6 0.2 2.2 1 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme ThiC PF01964.13 gi|284162836|ref|YP_003401459.1| - 1.6e-179 596.8 0.1 1.8e-179 596.6 0.1 1.0 1 0 0 1 1 1 1 ThiC family Herpes_U15 PF05613.6 gi|284162841|ref|YP_003401464.1| - 0.0027 18.0 0.4 0.0056 17.0 0.3 1.5 1 0 0 1 1 1 1 Human herpesvirus U15 protein SpoV PF08183.6 gi|284162842|ref|YP_003401465.1| - 0.1 12.3 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Stage V sporulation protein family Imm22 PF15592.1 gi|284162843|ref|YP_003401466.1| - 0.06 13.6 0.2 0.078 13.3 0.1 1.2 1 0 0 1 1 1 0 Immunity protein 22 RB_B PF01857.15 gi|284162845|ref|YP_003401468.1| - 0.041 13.3 0.7 2 7.9 0.5 2.5 1 1 0 1 1 1 0 Retinoblastoma-associated protein B domain RHH_2 PF03693.9 gi|284162846|ref|YP_003401469.1| - 0.006 16.7 0.1 0.0071 16.4 0.0 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0156) Lipoprotein_9 PF03180.9 gi|284162846|ref|YP_003401469.1| - 0.022 13.6 0.0 0.024 13.5 0.0 1.1 1 0 0 1 1 1 0 NLPA lipoprotein RHH_1 PF01402.16 gi|284162846|ref|YP_003401469.1| - 0.046 13.6 0.1 0.093 12.6 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family RHH_1 PF01402.16 gi|284162847|ref|YP_003401470.1| - 0.0024 17.6 0.0 0.0051 16.6 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family TF_Zn_Ribbon PF08271.7 gi|284162848|ref|YP_003401471.1| - 0.079 12.2 0.1 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_7 PF02796.10 gi|284162848|ref|YP_003401471.1| - 0.081 12.8 0.1 0.2 11.5 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase zf-H2C2_2 PF13465.1 gi|284162848|ref|YP_003401471.1| - 0.17 12.2 1.8 0.33 11.3 1.3 1.4 1 0 0 1 1 1 0 Zinc-finger double domain DUF1610 PF07754.6 gi|284162848|ref|YP_003401471.1| - 1.1 9.4 4.9 1.3 9.1 2.8 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Transpep_BrtH PF14399.1 gi|284162849|ref|YP_003401472.1| - 0.11 11.8 0.2 0.85 8.8 0.0 2.0 2 0 0 2 2 2 0 NlpC/p60-like transpeptidase Pox_G7 PF05503.7 gi|284162849|ref|YP_003401472.1| - 0.16 10.5 0.1 0.95 8.0 0.0 1.9 2 0 0 2 2 2 0 Poxvirus G7-like ATP-synt_10 PF05176.9 gi|284162851|ref|YP_003401474.1| - 0.0099 15.1 0.1 0.012 14.8 0.1 1.1 1 0 0 1 1 1 1 ATP10 protein Pox_MCEL PF03291.11 gi|284162851|ref|YP_003401474.1| - 0.028 13.2 2.3 0.035 12.9 1.6 1.1 1 0 0 1 1 1 0 mRNA capping enzyme UBN2 PF14223.1 gi|284162851|ref|YP_003401474.1| - 0.048 13.4 0.5 0.33 10.7 0.0 2.2 2 1 0 2 2 2 0 gag-polypeptide of LTR copia-type DUF3422 PF11902.3 gi|284162851|ref|YP_003401474.1| - 0.095 11.5 0.3 0.13 11.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3422) Sirohm_synth_C PF14823.1 gi|284162857|ref|YP_003401480.1| - 0.0064 15.7 0.2 0.4 10.0 0.0 2.6 2 1 1 3 3 3 1 Sirohaem biosynthesis protein C-terminal NblA PF04485.7 gi|284162857|ref|YP_003401480.1| - 0.014 15.2 0.4 0.064 13.1 0.1 2.2 2 0 0 2 2 2 0 Phycobilisome degradation protein nblA Utp13 PF08625.6 gi|284162857|ref|YP_003401480.1| - 0.032 13.8 0.0 0.063 12.9 0.0 1.5 1 0 0 1 1 1 0 Utp13 specific WD40 associated domain Spectrin PF00435.16 gi|284162857|ref|YP_003401480.1| - 0.072 13.3 3.0 6.6 7.0 0.4 2.1 2 0 0 2 2 2 0 Spectrin repeat DUF1793 PF08760.6 gi|284162857|ref|YP_003401480.1| - 0.12 12.1 0.3 0.25 11.1 0.1 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF1793) Phe_tRNA-synt_N PF02912.13 gi|284162857|ref|YP_003401480.1| - 0.24 11.1 3.2 9.7 5.9 0.2 2.4 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain YqzH PF14164.1 gi|284162857|ref|YP_003401480.1| - 0.38 10.7 2.7 1.4 8.8 0.1 2.7 3 0 0 3 3 3 0 YqzH-like protein DUF3647 PF12363.3 gi|284162857|ref|YP_003401480.1| - 1.6 8.8 5.7 2.6 8.1 0.5 2.9 1 1 3 4 4 4 0 Phage protein Peptidase_C39_2 PF13529.1 gi|284162858|ref|YP_003401481.1| - 0.0045 17.3 0.0 0.11 12.8 0.0 2.1 1 1 0 1 1 1 1 Peptidase_C39 like family PepSY PF03413.14 gi|284162859|ref|YP_003401482.1| - 0.038 14.6 0.2 1.7 9.3 0.1 3.1 2 1 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF2959 PF11172.3 gi|284162862|ref|YP_003401485.1| - 0.0061 16.3 0.1 0.0092 15.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2959) DLD PF14878.1 gi|284162862|ref|YP_003401485.1| - 0.017 15.1 0.4 0.044 13.8 0.0 1.8 2 0 0 2 2 2 0 Death-like domain of SPT6 HRM PF02793.17 gi|284162862|ref|YP_003401485.1| - 0.029 14.3 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Hormone receptor domain MFS_1 PF07690.11 gi|284162863|ref|YP_003401486.1| - 0.021 13.5 0.7 0.021 13.5 0.5 1.6 2 0 0 2 2 2 0 Major Facilitator Superfamily GPI2 PF06432.6 gi|284162863|ref|YP_003401486.1| - 0.32 10.3 4.3 0.22 10.8 1.0 1.8 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF1863 PF08937.6 gi|284162864|ref|YP_003401487.1| - 3.6e-18 65.8 0.0 4.4e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIR_2 PF13676.1 gi|284162864|ref|YP_003401487.1| - 1.1e-05 25.5 0.0 1.8e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 TIR domain ResIII PF04851.10 gi|284162865|ref|YP_003401488.1| - 1.3e-25 90.2 0.0 1.7e-24 86.6 0.0 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|284162865|ref|YP_003401488.1| - 1.5e-16 59.9 0.0 4e-16 58.6 0.0 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|284162865|ref|YP_003401488.1| - 1.2e-10 41.1 0.0 2.7e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|284162865|ref|YP_003401488.1| - 0.012 15.8 0.0 0.084 13.0 0.0 2.4 3 0 0 3 3 3 0 AAA domain UPF0079 PF02367.12 gi|284162865|ref|YP_003401488.1| - 0.041 13.5 0.0 0.081 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|284162865|ref|YP_003401488.1| - 0.049 13.0 0.0 0.13 11.6 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|284162865|ref|YP_003401488.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3582 PF12122.3 gi|284162865|ref|YP_003401488.1| - 0.14 12.1 0.2 2 8.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3582) YtzH PF14165.1 gi|284162865|ref|YP_003401488.1| - 0.16 12.2 0.0 0.34 11.1 0.0 1.6 1 0 0 1 1 1 0 YtzH-like protein DUF790 PF05626.6 gi|284162866|ref|YP_003401489.1| - 5.5e-137 456.3 6.0 6.1e-137 456.1 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Phage_endo_I PF05367.6 gi|284162866|ref|YP_003401489.1| - 0.0015 17.9 0.0 0.0031 16.9 0.0 1.4 1 0 0 1 1 1 1 Phage endonuclease I DUF4126 PF13548.1 gi|284162867|ref|YP_003401490.1| - 0.016 14.6 1.3 0.017 14.5 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4126) DUF3487 PF11990.3 gi|284162867|ref|YP_003401490.1| - 0.52 9.7 2.4 0.57 9.5 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) IncA PF04156.9 gi|284162867|ref|YP_003401490.1| - 1.2 8.6 4.4 1.3 8.6 3.0 1.1 1 0 0 1 1 1 0 IncA protein GATase_4 PF13230.1 gi|284162868|ref|YP_003401491.1| - 3e-76 255.7 0.0 4e-76 255.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_2 PF00310.16 gi|284162868|ref|YP_003401491.1| - 7.8e-11 41.2 0.0 2.7e-10 39.5 0.0 1.9 1 1 1 2 2 2 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|284162868|ref|YP_003401491.1| - 1.7e-08 34.4 0.0 2.9e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain MarR_2 PF12802.2 gi|284162868|ref|YP_003401491.1| - 1.5e-05 24.6 0.0 8e-05 22.2 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|284162868|ref|YP_003401491.1| - 3.5e-05 23.2 0.0 9.9e-05 21.8 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|284162868|ref|YP_003401491.1| - 0.0072 16.0 0.0 0.044 13.4 0.0 2.3 3 0 0 3 3 3 1 MarR family TrmB PF01978.14 gi|284162868|ref|YP_003401491.1| - 0.026 14.2 0.0 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|284162868|ref|YP_003401491.1| - 0.039 13.3 0.0 0.079 12.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Peptidase_C36 PF05415.6 gi|284162868|ref|YP_003401491.1| - 0.047 13.5 0.0 0.09 12.6 0.0 1.4 1 0 0 1 1 1 0 Beet necrotic yellow vein furovirus-type papain-like endopeptidase HTH_27 PF13463.1 gi|284162868|ref|YP_003401491.1| - 0.054 13.8 0.0 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|284162868|ref|YP_003401491.1| - 0.061 12.8 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RPA_C PF08784.6 gi|284162868|ref|YP_003401491.1| - 0.16 12.3 0.1 0.32 11.4 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal 2-Hacid_dh_C PF02826.14 gi|284162869|ref|YP_003401492.1| - 0.0025 17.0 0.0 0.057 12.5 0.0 2.2 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glyco_tran_WecB PF03808.8 gi|284162869|ref|YP_003401492.1| - 0.0085 15.5 0.0 0.013 14.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase WecB/TagA/CpsF family NAD_binding_7 PF13241.1 gi|284162869|ref|YP_003401492.1| - 0.17 12.1 0.3 1.6 9.0 0.1 2.0 1 1 1 2 2 2 0 Putative NAD(P)-binding ThiF PF00899.16 gi|284162869|ref|YP_003401492.1| - 0.28 11.0 4.5 1.1 9.0 0.1 2.9 2 1 0 2 2 2 0 ThiF family LTD PF00932.14 gi|284162871|ref|YP_003401494.1| - 7.8e-27 93.6 5.1 7.8e-27 93.6 3.5 2.4 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.12 gi|284162871|ref|YP_003401494.1| - 6.6e-26 90.6 0.0 1.1e-25 89.9 0.0 1.4 1 0 0 1 1 1 1 Staphylococcal nuclease homologue BiPBP_C PF06832.7 gi|284162871|ref|YP_003401494.1| - 1.2e-05 25.0 0.0 2.7e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Penicillin-Binding Protein C-terminus Family Lar_restr_allev PF14354.1 gi|284162872|ref|YP_003401495.1| - 0.018 15.2 0.1 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar Terminase_GpA PF05876.7 gi|284162872|ref|YP_003401495.1| - 0.04 12.2 0.0 0.052 11.8 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) RHH_1 PF01402.16 gi|284162872|ref|YP_003401495.1| - 0.044 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DZR PF12773.2 gi|284162872|ref|YP_003401495.1| - 0.082 12.7 0.1 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|284162872|ref|YP_003401495.1| - 0.095 12.4 0.1 0.19 11.4 0.1 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF217 PF02697.9 gi|284162872|ref|YP_003401495.1| - 0.095 12.9 0.2 0.75 10.0 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized ACR, COG1753 DUF4268 PF14088.1 gi|284162873|ref|YP_003401496.1| - 7.6e-35 119.6 0.3 1.6e-34 118.5 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4268) DUF91 PF01939.11 gi|284162873|ref|YP_003401496.1| - 0.032 13.3 0.1 0.13 11.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF91 DUF524 PF04411.7 gi|284162874|ref|YP_003401497.1| - 0.0022 17.8 1.1 0.16 11.8 0.7 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF524) AAA_5 PF07728.9 gi|284162875|ref|YP_003401498.1| - 9.1e-15 54.6 0.0 1.7e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|284162875|ref|YP_003401498.1| - 2.4e-06 27.8 0.0 1e-05 25.7 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|284162875|ref|YP_003401498.1| - 0.00068 19.0 0.0 0.0022 17.4 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|284162875|ref|YP_003401498.1| - 0.0062 15.9 0.0 0.033 13.6 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|284162875|ref|YP_003401498.1| - 0.019 15.7 0.2 0.1 13.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|284162875|ref|YP_003401498.1| - 0.041 13.0 0.0 0.08 12.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|284162875|ref|YP_003401498.1| - 0.048 13.8 0.0 0.15 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|284162875|ref|YP_003401498.1| - 0.056 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|284162875|ref|YP_003401498.1| - 0.19 11.7 0.0 0.55 10.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain SNase PF00565.12 gi|284162876|ref|YP_003401499.1| - 2.8e-26 91.8 0.0 3.5e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Excalibur PF05901.6 gi|284162876|ref|YP_003401499.1| - 0.052 13.8 2.2 0.18 12.2 0.3 2.7 2 1 0 2 2 2 0 Excalibur calcium-binding domain Lamp PF01299.12 gi|284162876|ref|YP_003401499.1| - 1 8.4 5.4 2 7.5 3.7 1.4 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) DUF2400 PF09674.5 gi|284162877|ref|YP_003401500.1| - 7.2e-25 88.0 0.1 1.2e-24 87.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2400) DUF3467 PF11950.3 gi|284162877|ref|YP_003401500.1| - 0.11 12.4 0.2 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3467) DUF217 PF02697.9 gi|284162878|ref|YP_003401501.1| - 0.00099 19.3 1.3 0.0012 19.0 0.9 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 TMF_DNA_bd PF12329.3 gi|284162878|ref|YP_003401501.1| - 0.053 13.3 0.6 0.072 12.8 0.4 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF4298 PF14131.1 gi|284162878|ref|YP_003401501.1| - 0.065 13.1 0.3 0.08 12.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) Rab5-bind PF09311.6 gi|284162878|ref|YP_003401501.1| - 0.073 12.9 0.1 0.075 12.9 0.0 1.0 1 0 0 1 1 1 0 Rabaptin-like protein RHH_1 PF01402.16 gi|284162878|ref|YP_003401501.1| - 0.1 12.5 1.0 0.21 11.5 0.4 1.8 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family RBD-FIP PF09457.5 gi|284162878|ref|YP_003401501.1| - 0.47 10.2 5.4 5.3 6.9 1.7 2.5 2 1 0 2 2 2 0 FIP domain UVR PF02151.14 gi|284162878|ref|YP_003401501.1| - 3.7 7.1 5.0 6 6.5 0.2 2.8 1 1 1 3 3 3 0 UvrB/uvrC motif Mad3_BUB1_I PF08311.7 gi|284162880|ref|YP_003401503.1| - 0.043 13.6 0.8 0.072 12.8 0.6 1.4 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 Hom_end_hint PF05203.11 gi|284162880|ref|YP_003401503.1| - 0.089 12.5 1.2 0.1 12.3 0.8 1.1 1 0 0 1 1 1 0 Hom_end-associated Hint AAA_23 PF13476.1 gi|284162880|ref|YP_003401503.1| - 4.4 7.5 8.1 5.4 7.2 5.6 1.1 1 0 0 1 1 1 0 AAA domain DUF2852 PF11014.3 gi|284162881|ref|YP_003401504.1| - 0.09 12.7 0.1 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2852) Clathrin-link PF09268.5 gi|284162881|ref|YP_003401504.1| - 0.19 10.8 1.7 0.79 8.8 0.5 2.1 2 0 0 2 2 2 0 Clathrin, heavy-chain linker Adeno_GP19K PF04881.8 gi|284162882|ref|YP_003401505.1| - 0.049 13.3 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 Adenovirus GP19K Sulfate_transp PF00916.15 gi|284162884|ref|YP_003401507.1| - 0.0091 15.0 1.6 0.017 14.1 1.1 1.4 1 0 0 1 1 1 1 Sulfate transporter family DUF3297 PF11730.3 gi|284162884|ref|YP_003401507.1| - 0.1 12.2 0.1 0.23 11.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3297) Wzy_C PF04932.10 gi|284162884|ref|YP_003401507.1| - 0.22 11.2 7.5 2.5 7.8 0.9 2.7 3 0 0 3 3 3 0 O-Antigen ligase DUF1275 PF06912.6 gi|284162884|ref|YP_003401507.1| - 0.69 9.0 11.7 0.048 12.8 0.7 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1275) AmoA PF05145.7 gi|284162884|ref|YP_003401507.1| - 0.83 8.6 5.8 0.23 10.4 0.9 2.0 2 0 0 2 2 2 0 Putative ammonia monooxygenase Bac_small_YrzI PF09501.5 gi|284162885|ref|YP_003401508.1| - 0.4 10.6 2.8 0.29 11.0 0.6 1.8 2 0 0 2 2 2 0 Probable sporulation protein (Bac_small_yrzI) Myb_DNA-bind_5 PF13873.1 gi|284162885|ref|YP_003401508.1| - 0.72 9.7 5.1 0.17 11.8 0.4 2.2 2 1 0 2 2 2 0 Myb/SANT-like DNA-binding domain Gp-FAR-1 PF05823.7 gi|284162885|ref|YP_003401508.1| - 0.91 9.4 11.0 1.1 9.2 0.5 2.1 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Lipoprotein_X PF03305.8 gi|284162885|ref|YP_003401508.1| - 1.2 8.4 6.0 0.28 10.5 0.8 1.9 1 1 1 2 2 2 0 Mycoplasma MG185/MG260 protein Med2 PF11214.3 gi|284162885|ref|YP_003401508.1| - 2.3 8.2 7.4 0.24 11.4 1.6 1.9 1 1 1 2 2 2 0 Mediator complex subunit 2 SHOCT PF09851.4 gi|284162885|ref|YP_003401508.1| - 4.9 6.7 8.6 0.27 10.7 0.3 3.0 3 1 1 4 4 4 0 Short C-terminal domain Tic20 PF09685.5 gi|284162887|ref|YP_003401510.1| - 3.6 7.6 11.4 4.2 7.3 7.1 1.7 1 1 1 2 2 2 0 Tic20-like protein DUF2116 PF09889.4 gi|284162888|ref|YP_003401511.1| - 4.9 7.0 5.8 3.7 7.4 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) RHH_1 PF01402.16 gi|284162889|ref|YP_003401512.1| - 3.2e-05 23.6 1.3 0.00058 19.6 0.0 2.6 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.10 gi|284162889|ref|YP_003401512.1| - 0.006 16.2 0.0 0.0092 15.6 0.0 1.4 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_5 PF01022.15 gi|284162889|ref|YP_003401512.1| - 0.068 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_19 PF12844.2 gi|284162889|ref|YP_003401512.1| - 0.074 13.1 0.1 0.22 11.6 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain RAB3GAP2_C PF14656.1 gi|284162889|ref|YP_003401512.1| - 0.078 11.1 0.0 0.078 11.1 0.0 1.0 1 0 0 1 1 1 0 Rab3 GTPase-activating protein regulatory subunit C-terminus HTH_AsnC-type PF13404.1 gi|284162889|ref|YP_003401512.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Methyltransf_6 PF03737.10 gi|284162891|ref|YP_003401514.1| - 5.4e-40 136.7 5.0 5.4e-40 136.7 3.4 1.9 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|284162891|ref|YP_003401514.1| - 5.7e-26 91.3 2.7 1.2e-25 90.2 1.9 1.6 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family ThiG PF05690.9 gi|284162891|ref|YP_003401514.1| - 4.4e-06 25.9 0.2 2e-05 23.8 0.1 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|284162891|ref|YP_003401514.1| - 6.8e-06 25.5 2.2 8.6e-06 25.1 0.1 2.1 2 1 0 2 2 2 1 Histidine biosynthesis protein HMGL-like PF00682.14 gi|284162891|ref|YP_003401514.1| - 0.00012 21.8 4.0 0.0046 16.6 0.6 2.4 1 1 1 2 2 2 2 HMGL-like DeoC PF01791.4 gi|284162891|ref|YP_003401514.1| - 0.00014 21.1 2.5 0.0013 18.0 0.2 2.9 1 1 2 3 3 3 1 DeoC/LacD family aldolase PEP_mutase PF13714.1 gi|284162891|ref|YP_003401514.1| - 0.00026 20.2 0.1 0.017 14.3 0.0 2.6 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase DUF561 PF04481.7 gi|284162891|ref|YP_003401514.1| - 0.0027 16.6 1.9 0.013 14.4 0.4 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF561) IGPS PF00218.16 gi|284162891|ref|YP_003401514.1| - 0.0051 15.8 1.1 0.0076 15.3 0.8 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase TMP-TENI PF02581.12 gi|284162891|ref|YP_003401514.1| - 0.0053 15.8 0.3 0.023 13.8 0.2 2.1 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI Ribul_P_3_epim PF00834.14 gi|284162891|ref|YP_003401514.1| - 0.0074 15.4 2.4 0.017 14.2 0.7 2.4 2 1 0 2 2 2 1 Ribulose-phosphate 3 epimerase family ADH_zinc_N PF00107.21 gi|284162891|ref|YP_003401514.1| - 0.04 13.4 0.3 5.7 6.5 0.1 2.6 1 1 1 2 2 2 0 Zinc-binding dehydrogenase DUF3172 PF11371.3 gi|284162891|ref|YP_003401514.1| - 0.11 12.0 0.1 8.1 5.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3172) Trp_syntA PF00290.15 gi|284162891|ref|YP_003401514.1| - 0.22 10.0 4.4 1.6 7.2 1.1 2.9 1 1 2 3 3 3 0 Tryptophan synthase alpha chain SSF PF00474.12 gi|284162892|ref|YP_003401515.1| - 1.3e-77 261.1 29.0 2.1e-77 260.4 20.1 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Chs3p PF12271.3 gi|284162893|ref|YP_003401516.1| - 0.012 14.6 0.2 0.012 14.6 0.2 1.0 1 0 0 1 1 1 0 Chitin synthase III catalytic subunit CcoS PF03597.10 gi|284162893|ref|YP_003401516.1| - 0.084 12.3 0.5 0.094 12.1 0.3 1.1 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type DNA_primase_S PF01896.14 gi|284162895|ref|YP_003401518.1| - 8.4e-23 80.7 0.3 1.4e-22 80.0 0.2 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit MutS_IV PF05190.13 gi|284162895|ref|YP_003401518.1| - 0.057 13.6 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 MutS family domain IV WD40_alt PF14077.1 gi|284162896|ref|YP_003401519.1| - 0.0046 16.5 0.8 0.0046 16.5 0.6 3.2 3 1 1 4 4 4 1 Alternative WD40 repeat motif DUF1847 PF08901.6 gi|284162897|ref|YP_003401520.1| - 0.03 13.8 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1847) Usp PF00582.21 gi|284162897|ref|YP_003401520.1| - 0.033 14.3 0.0 0.042 14.0 0.0 1.0 1 0 0 1 1 1 0 Universal stress protein family TauE PF01925.14 gi|284162898|ref|YP_003401521.1| - 5.2e-32 111.2 46.5 5.2e-32 111.2 32.2 1.6 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE Cation_ATPase_C PF00689.16 gi|284162899|ref|YP_003401522.1| - 2.3e-05 23.9 0.5 2.8e-05 23.7 0.3 1.1 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Tetraspannin PF00335.15 gi|284162899|ref|YP_003401522.1| - 1.9 7.7 8.3 3 7.0 5.7 1.4 1 1 0 1 1 1 0 Tetraspanin family DUF4064 PF13273.1 gi|284162899|ref|YP_003401522.1| - 2.4 8.3 11.1 3.3 7.8 6.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF4282 PF14110.1 gi|284162899|ref|YP_003401522.1| - 5.3 7.2 16.9 2.2 8.5 5.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) RHH_1 PF01402.16 gi|284162900|ref|YP_003401523.1| - 4.7e-08 32.6 0.5 1.3e-07 31.1 0.3 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_4 PF13467.1 gi|284162900|ref|YP_003401523.1| - 0.00027 20.7 0.2 0.27 11.1 0.1 2.4 2 0 0 2 2 2 2 Ribbon-helix-helix domain vATP-synt_E PF01991.13 gi|284162900|ref|YP_003401523.1| - 0.0021 17.3 3.5 0.0036 16.6 2.3 1.6 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit LEF-9 PF05094.7 gi|284162900|ref|YP_003401523.1| - 0.038 12.3 0.9 0.047 12.0 0.6 1.1 1 0 0 1 1 1 0 Late expression factor 9 (LEF-9) DUF217 PF02697.9 gi|284162900|ref|YP_003401523.1| - 0.067 13.4 4.1 0.21 11.8 0.1 2.8 1 1 1 3 3 3 0 Uncharacterized ACR, COG1753 Usp PF00582.21 gi|284162901|ref|YP_003401524.1| - 5.2e-09 36.4 0.0 6.5e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family OTCace PF00185.19 gi|284162901|ref|YP_003401524.1| - 0.00024 20.9 0.0 0.00027 20.8 0.0 1.1 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Homeobox PF00046.24 gi|284162901|ref|YP_003401524.1| - 0.1 12.2 0.1 0.96 9.1 0.1 2.1 2 0 0 2 2 2 0 Homeobox domain TauE PF01925.14 gi|284162902|ref|YP_003401525.1| - 1.7e-28 99.6 34.8 1.7e-28 99.6 24.2 2.2 2 1 0 2 2 2 1 Sulfite exporter TauE/SafE Usp PF00582.21 gi|284162903|ref|YP_003401526.1| - 3e-36 124.6 1.2 1.1e-20 74.1 0.0 3.0 2 1 0 2 2 2 2 Universal stress protein family Pterin_bind PF00809.17 gi|284162903|ref|YP_003401526.1| - 0.0026 17.1 0.0 0.0044 16.4 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Glyco_tran_WecB PF03808.8 gi|284162903|ref|YP_003401526.1| - 0.081 12.3 0.1 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family DUF1624 PF07786.7 gi|284162904|ref|YP_003401527.1| - 5.8e-58 195.8 17.2 6.7e-58 195.6 12.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|284162904|ref|YP_003401527.1| - 5.3e-05 22.2 31.4 0.031 13.1 18.7 2.1 1 1 1 2 2 2 2 Acyltransferase family Fst_toxin PF13955.1 gi|284162904|ref|YP_003401527.1| - 2.5 7.8 7.7 17 5.1 1.7 2.6 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system Chromate_transp PF02417.10 gi|284162904|ref|YP_003401527.1| - 2.7 7.5 15.2 0.38 10.3 7.9 1.6 2 0 0 2 2 2 0 Chromate transporter Tubulin PF00091.20 gi|284162905|ref|YP_003401528.1| - 4.7e-39 134.4 0.1 1.2e-38 133.0 0.1 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|284162905|ref|YP_003401528.1| - 8.8e-39 131.4 0.7 1.9e-38 130.3 0.5 1.6 1 0 0 1 1 1 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.1 gi|284162905|ref|YP_003401528.1| - 0.036 13.0 1.8 0.15 10.9 0.0 2.1 2 0 0 2 2 2 0 Tubulin like ABC_tran PF00005.22 gi|284162906|ref|YP_003401529.1| - 1.8e-33 115.7 0.0 3.2e-33 114.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284162906|ref|YP_003401529.1| - 1.5e-06 28.4 2.6 8.6e-05 22.6 0.5 2.5 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|284162906|ref|YP_003401529.1| - 0.00032 19.9 0.0 0.01 15.0 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|284162906|ref|YP_003401529.1| - 0.00035 20.4 0.1 0.0025 17.6 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TOBE PF03459.12 gi|284162906|ref|YP_003401529.1| - 0.0016 18.4 0.7 0.0099 15.9 0.1 2.4 1 1 1 2 2 2 1 TOBE domain TOBE_2 PF08402.5 gi|284162906|ref|YP_003401529.1| - 0.0087 16.0 0.1 0.082 12.9 0.0 2.3 2 0 0 2 2 2 1 TOBE domain DUF258 PF03193.11 gi|284162906|ref|YP_003401529.1| - 0.01 14.9 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|284162906|ref|YP_003401529.1| - 0.011 15.1 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284162906|ref|YP_003401529.1| - 0.03 14.3 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.1 gi|284162906|ref|YP_003401529.1| - 0.074 13.3 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|284162906|ref|YP_003401529.1| - 0.11 12.3 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_15 PF13175.1 gi|284162906|ref|YP_003401529.1| - 0.11 11.5 0.0 0.7 8.8 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|284162906|ref|YP_003401529.1| - 0.11 12.6 0.2 0.59 10.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|284162907|ref|YP_003401530.1| - 3.1e-23 82.2 9.1 3.1e-23 82.2 6.3 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component COX15-CtaA PF02628.10 gi|284162907|ref|YP_003401530.1| - 0.021 13.7 6.0 0.03 13.2 4.1 1.2 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein SBP_bac_11 PF13531.1 gi|284162908|ref|YP_003401531.1| - 8.9e-34 117.1 0.0 1.2e-33 116.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|284162908|ref|YP_003401531.1| - 1.2e-10 41.6 0.1 3.8e-10 40.0 0.1 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|284162908|ref|YP_003401531.1| - 0.0074 15.6 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|284162908|ref|YP_003401531.1| - 0.14 11.8 0.3 0.75 9.4 0.2 2.1 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein HTH_1 PF00126.22 gi|284162909|ref|YP_003401532.1| - 6.5e-08 32.2 0.0 9e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family NUMOD1 PF07453.8 gi|284162909|ref|YP_003401532.1| - 5.2e-05 22.9 1.2 0.00016 21.3 0.1 2.2 2 0 0 2 2 2 1 NUMOD1 domain HTH_45 PF14947.1 gi|284162909|ref|YP_003401532.1| - 0.017 14.8 0.1 0.049 13.4 0.1 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|284162909|ref|YP_003401532.1| - 0.02 14.5 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DUF2187 PF09953.4 gi|284162909|ref|YP_003401532.1| - 0.072 12.8 3.2 0.29 10.8 2.3 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) DUF659 PF04937.10 gi|284162909|ref|YP_003401532.1| - 0.092 12.2 0.2 0.33 10.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF 659) HTH_8 PF02954.14 gi|284162909|ref|YP_003401532.1| - 0.15 11.6 0.0 0.32 10.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family BPL_LplA_LipB PF03099.14 gi|284162911|ref|YP_003401534.1| - 2.8e-21 75.8 0.0 5.2e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|284162911|ref|YP_003401534.1| - 1.7e-12 46.7 0.1 3.2e-12 45.9 0.1 1.4 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|284162911|ref|YP_003401534.1| - 1.8e-07 30.7 0.6 4.2e-07 29.5 0.4 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|284162911|ref|YP_003401534.1| - 0.00018 20.7 0.1 0.00033 19.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|284162911|ref|YP_003401534.1| - 0.00059 19.7 0.1 0.0013 18.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284162911|ref|YP_003401534.1| - 0.0037 17.1 0.0 0.008 16.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|284162911|ref|YP_003401534.1| - 0.0051 16.4 0.4 0.018 14.7 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_4 PF13613.1 gi|284162911|ref|YP_003401534.1| - 0.0052 16.2 0.0 0.0093 15.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease HTH_23 PF13384.1 gi|284162911|ref|YP_003401534.1| - 0.0059 16.2 0.4 0.018 14.6 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.1 gi|284162911|ref|YP_003401534.1| - 0.0073 16.4 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|284162911|ref|YP_003401534.1| - 0.017 15.3 0.1 0.039 14.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|284162911|ref|YP_003401534.1| - 0.017 14.8 0.0 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|284162911|ref|YP_003401534.1| - 0.033 14.2 0.1 0.19 11.8 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_29 PF13551.1 gi|284162911|ref|YP_003401534.1| - 0.034 14.2 0.0 0.063 13.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.1 gi|284162911|ref|YP_003401534.1| - 0.043 13.3 0.0 0.09 12.3 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|284162911|ref|YP_003401534.1| - 0.044 13.4 0.0 0.087 12.5 0.0 1.5 1 0 0 1 1 1 0 MarR family GntR PF00392.16 gi|284162911|ref|YP_003401534.1| - 0.047 13.1 0.1 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.6 gi|284162911|ref|YP_003401534.1| - 0.063 12.6 0.1 0.15 11.4 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_6 PF01418.12 gi|284162911|ref|YP_003401534.1| - 0.07 12.8 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family MarR PF01047.17 gi|284162911|ref|YP_003401534.1| - 0.091 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.7 gi|284162911|ref|YP_003401534.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_1 PF00126.22 gi|284162911|ref|YP_003401534.1| - 0.16 11.7 0.0 0.54 10.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Semialdhyde_dhC PF02774.13 gi|284162912|ref|YP_003401535.1| - 1.9e-40 138.7 0.0 3e-40 138.0 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|284162912|ref|YP_003401535.1| - 2.6e-37 127.8 0.0 3.9e-37 127.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|284162912|ref|YP_003401535.1| - 0.0014 18.1 0.0 0.0035 16.8 0.0 1.7 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|284162912|ref|YP_003401535.1| - 0.0049 16.7 0.0 0.0086 15.9 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|284162912|ref|YP_003401535.1| - 0.016 15.2 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding DXP_reductoisom PF02670.11 gi|284162912|ref|YP_003401535.1| - 0.019 15.4 0.0 0.041 14.4 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Ldh_1_N PF00056.18 gi|284162912|ref|YP_003401535.1| - 0.06 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DUF2298 PF10060.4 gi|284162913|ref|YP_003401536.1| - 1.4e-75 255.0 46.3 3.4e-75 253.7 32.1 1.6 1 1 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) TFIIE_alpha PF02002.12 gi|284162914|ref|YP_003401537.1| - 1.4e-25 88.7 5.6 1.4e-25 88.7 3.9 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit Fer2_3 PF13085.1 gi|284162914|ref|YP_003401537.1| - 0.0099 15.6 0.5 0.014 15.1 0.1 1.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Phage_rep_org_N PF09681.5 gi|284162914|ref|YP_003401537.1| - 0.015 14.8 0.4 0.057 12.9 0.1 2.1 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) TF_Zn_Ribbon PF08271.7 gi|284162914|ref|YP_003401537.1| - 0.016 14.5 1.9 0.032 13.5 1.3 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_Crp_2 PF13545.1 gi|284162914|ref|YP_003401537.1| - 0.034 13.9 0.1 0.098 12.4 0.0 1.9 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Mu-like_Com PF10122.4 gi|284162914|ref|YP_003401537.1| - 0.072 12.1 0.1 0.12 11.4 0.1 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com Zn_Tnp_IS1595 PF12760.2 gi|284162914|ref|YP_003401537.1| - 0.083 12.7 0.2 0.17 11.7 0.1 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Ribonuc_red_lgN PF00317.16 gi|284162914|ref|YP_003401537.1| - 0.11 12.3 0.2 0.17 11.7 0.1 1.7 1 1 0 1 1 1 0 Ribonucleotide reductase, all-alpha domain DUF2296 PF10058.4 gi|284162914|ref|YP_003401537.1| - 0.41 10.4 2.1 1.2 8.8 1.0 2.0 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Cut12 PF11500.3 gi|284162914|ref|YP_003401537.1| - 3 7.5 6.6 1 9.0 2.5 1.7 2 0 0 2 2 2 0 Spindle pole body formation-associated protein Rad50_zn_hook PF04423.9 gi|284162914|ref|YP_003401537.1| - 3.7 7.0 7.2 0.98 8.9 0.1 3.0 3 0 0 3 3 3 0 Rad50 zinc hook motif TPD PF14811.1 gi|284162915|ref|YP_003401538.1| - 3.6e-31 107.5 0.0 5.1e-31 107.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function TPD sequence-motif TGT PF01702.13 gi|284162916|ref|YP_003401539.1| - 7.6e-10 38.4 0.0 1.9e-09 37.1 0.0 1.6 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|284162916|ref|YP_003401539.1| - 9.1e-10 38.1 0.1 2.6e-09 36.6 0.1 1.7 2 0 0 2 2 2 1 PUA domain TGT PF01702.13 gi|284162917|ref|YP_003401540.1| - 1.9e-51 174.6 0.0 2.5e-51 174.2 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase LigD_N PF13298.1 gi|284162918|ref|YP_003401541.1| - 1.3e-29 102.3 0.0 1.5e-29 102.1 0.0 1.0 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) HemS PF05171.7 gi|284162918|ref|YP_003401541.1| - 0.096 12.4 0.0 0.26 11.1 0.0 1.6 2 0 0 2 2 2 0 Haemin-degrading HemS.ChuX domain Toprim_4 PF13662.1 gi|284162919|ref|YP_003401542.1| - 1.1e-10 41.4 0.5 3.3e-10 39.8 0.2 2.1 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|284162919|ref|YP_003401542.1| - 0.0014 18.5 0.3 0.0014 18.5 0.2 3.3 3 1 1 4 4 4 1 Toprim domain Toprim_2 PF13155.1 gi|284162919|ref|YP_003401542.1| - 0.023 14.9 0.0 0.054 13.8 0.0 1.8 1 1 0 1 1 1 0 Toprim-like 3Beta_HSD PF01073.14 gi|284162919|ref|YP_003401542.1| - 0.075 11.7 1.2 7.1 5.2 0.0 2.2 2 0 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family Phage_CP76 PF06892.6 gi|284162919|ref|YP_003401542.1| - 0.31 10.3 3.3 2.8 7.2 0.1 2.9 2 1 0 2 2 2 0 Phage regulatory protein CII (CP76) Wyosine_form PF08608.7 gi|284162920|ref|YP_003401543.1| - 2.9e-21 75.3 0.0 7.5e-21 74.0 0.0 1.7 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|284162920|ref|YP_003401543.1| - 7.7e-21 74.9 0.1 1e-19 71.3 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily SPOUT_MTase_2 PF14419.1 gi|284162922|ref|YP_003401545.1| - 1.3e-81 271.9 2.2 2e-81 271.3 1.5 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.12 gi|284162922|ref|YP_003401545.1| - 1.3e-23 83.5 5.2 1.3e-23 83.5 3.6 1.8 2 0 0 2 2 2 1 THUMP domain SpoU_methylase PF00588.14 gi|284162922|ref|YP_003401545.1| - 0.013 15.4 0.0 0.25 11.2 0.0 2.3 1 1 0 1 1 1 0 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|284162922|ref|YP_003401545.1| - 0.032 13.7 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 SAM-dependent RNA methyltransferase DUF2258 PF10015.4 gi|284162923|ref|YP_003401546.1| - 1.8e-29 101.3 1.8 5.2e-29 99.8 1.2 1.8 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) DUF3213 PF11491.3 gi|284162923|ref|YP_003401546.1| - 4.5 7.2 13.3 1 9.2 2.3 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3213) Antitoxin-MazE PF04014.13 gi|284162924|ref|YP_003401547.1| - 1.4e-11 43.8 1.9 2.1e-11 43.2 1.3 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF1905 PF08922.6 gi|284162924|ref|YP_003401547.1| - 0.074 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) eIF-1a PF01176.14 gi|284162924|ref|YP_003401547.1| - 0.086 12.2 0.4 0.15 11.5 0.3 1.5 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 OrfB_Zn_ribbon PF07282.6 gi|284162926|ref|YP_003401549.1| - 1e-27 95.5 0.3 2.1e-27 94.5 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|284162926|ref|YP_003401549.1| - 4.3e-12 45.9 1.9 6.2e-12 45.3 0.9 1.6 1 1 0 1 1 1 1 Probable transposase UPF0547 PF10571.4 gi|284162926|ref|YP_003401549.1| - 0.0015 18.1 0.4 0.85 9.3 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|284162926|ref|YP_003401549.1| - 0.0042 16.3 1.3 0.3 10.4 1.2 2.3 1 1 1 2 2 2 2 TFIIB zinc-binding FYVE PF01363.16 gi|284162926|ref|YP_003401549.1| - 0.016 15.1 0.5 0.029 14.2 0.4 1.4 1 0 0 1 1 1 0 FYVE zinc finger zf-ribbon_3 PF13248.1 gi|284162926|ref|YP_003401549.1| - 0.016 14.3 1.2 3.4 6.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF4090 PF13319.1 gi|284162926|ref|YP_003401549.1| - 0.02 14.8 1.1 0.053 13.4 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4090) zinc_ribbon_2 PF13240.1 gi|284162926|ref|YP_003401549.1| - 0.029 13.8 2.4 2.5 7.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|284162926|ref|YP_003401549.1| - 0.031 14.0 0.3 0.057 13.2 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon PRELI PF04707.9 gi|284162926|ref|YP_003401549.1| - 0.066 12.7 0.1 0.18 11.3 0.1 1.7 1 0 0 1 1 1 0 PRELI-like family Auto_anti-p27 PF06677.7 gi|284162926|ref|YP_003401549.1| - 0.07 12.8 2.2 0.21 11.4 1.6 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) IBR PF01485.16 gi|284162926|ref|YP_003401549.1| - 0.072 12.9 0.2 0.16 11.8 0.2 1.6 1 0 0 1 1 1 0 IBR domain DUF2325 PF10087.4 gi|284162926|ref|YP_003401549.1| - 0.11 12.3 2.4 6.8 6.6 0.1 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) zf-C2H2_3 PF13878.1 gi|284162926|ref|YP_003401549.1| - 0.33 10.5 2.5 0.96 9.0 0.2 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO CRF PF00473.12 gi|284162926|ref|YP_003401549.1| - 0.57 10.3 6.4 1.4 9.1 4.4 1.6 1 0 0 1 1 1 0 Corticotropin-releasing factor family NinG PF05766.7 gi|284162926|ref|YP_003401549.1| - 0.81 9.3 11.5 0.37 10.5 0.1 3.1 3 0 0 3 3 3 0 Bacteriophage Lambda NinG protein zf-H2C2_2 PF13465.1 gi|284162926|ref|YP_003401549.1| - 0.89 9.9 3.5 21 5.6 0.2 2.5 2 0 0 2 2 2 0 Zinc-finger double domain PIN PF01850.16 gi|284162927|ref|YP_003401550.1| - 0.041 14.2 0.3 0.046 14.0 0.2 1.1 1 0 0 1 1 1 0 PIN domain NAC PF01849.13 gi|284162929|ref|YP_003401552.1| - 7.3e-13 47.8 3.0 7.3e-13 47.8 2.1 2.1 1 1 1 2 2 2 1 NAC domain UBA PF00627.26 gi|284162929|ref|YP_003401552.1| - 4.4e-08 32.7 1.2 4.4e-08 32.7 0.8 2.0 2 0 0 2 2 2 1 UBA/TS-N domain RTC4 PF14474.1 gi|284162929|ref|YP_003401552.1| - 0.01 15.7 0.6 0.013 15.4 0.3 1.3 1 1 0 1 1 1 0 RTC4-like domain UBA_4 PF14555.1 gi|284162929|ref|YP_003401552.1| - 0.049 13.1 0.1 0.079 12.4 0.1 1.3 1 0 0 1 1 1 0 UBA-like domain DUF3867 PF12983.2 gi|284162929|ref|YP_003401552.1| - 0.095 12.6 2.1 0.1 12.5 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) Histone_HNS PF00816.16 gi|284162929|ref|YP_003401552.1| - 0.12 12.8 1.5 0.38 11.2 0.0 2.1 2 0 0 2 2 2 0 H-NS histone family RFC1 PF08519.7 gi|284162929|ref|YP_003401552.1| - 0.44 10.2 3.6 0.65 9.7 0.4 2.0 1 1 1 2 2 2 0 Replication factor RFC1 C terminal domain DUF4258 PF14076.1 gi|284162929|ref|YP_003401552.1| - 0.57 10.2 2.4 8.5 6.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) DUF211 PF02680.9 gi|284162929|ref|YP_003401552.1| - 0.66 9.8 4.0 1.4 8.8 0.4 2.0 1 1 1 2 2 2 0 Uncharacterized ArCR, COG1888 UPF0154 PF03672.8 gi|284162929|ref|YP_003401552.1| - 2.8 7.6 8.7 4.5 6.9 3.4 2.5 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0154) GCD14 PF08704.5 gi|284162930|ref|YP_003401553.1| - 6.9e-15 55.2 0.0 9.3e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|284162930|ref|YP_003401553.1| - 1.6e-12 48.0 0.0 2.5e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|284162930|ref|YP_003401553.1| - 7.3e-12 45.1 0.1 9.8e-12 44.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|284162930|ref|YP_003401553.1| - 8.1e-10 38.5 0.0 9.7e-10 38.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|284162930|ref|YP_003401553.1| - 1.9e-08 33.8 0.0 5.9e-08 32.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|284162930|ref|YP_003401553.1| - 3.1e-07 30.4 0.0 1.2e-06 28.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|284162930|ref|YP_003401553.1| - 3.4e-05 22.9 0.0 4.9e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Met_10 PF02475.11 gi|284162930|ref|YP_003401553.1| - 7.1e-05 22.4 0.1 0.00011 21.9 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|284162930|ref|YP_003401553.1| - 0.00029 21.2 0.0 0.00068 20.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|284162930|ref|YP_003401553.1| - 0.00056 20.2 0.0 0.00084 19.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|284162930|ref|YP_003401553.1| - 0.00074 18.6 0.3 0.0011 18.0 0.2 1.2 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.8 gi|284162930|ref|YP_003401553.1| - 0.0013 17.9 0.0 0.0017 17.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|284162930|ref|YP_003401553.1| - 0.0087 15.7 0.0 0.018 14.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|284162930|ref|YP_003401553.1| - 0.012 16.0 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|284162930|ref|YP_003401553.1| - 0.048 13.2 0.0 0.074 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DOT1 PF08123.8 gi|284162930|ref|YP_003401553.1| - 0.058 12.7 0.0 0.081 12.2 0.0 1.4 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_4 PF02390.12 gi|284162930|ref|YP_003401553.1| - 0.083 11.9 0.0 0.22 10.5 0.0 1.6 2 0 0 2 2 2 0 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|284162930|ref|YP_003401553.1| - 0.095 12.0 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CMAS PF02353.15 gi|284162930|ref|YP_003401553.1| - 0.1 11.6 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase EamA PF00892.15 gi|284162931|ref|YP_003401554.1| - 1.1e-56 190.3 39.5 6.7e-29 100.4 12.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|284162931|ref|YP_003401554.1| - 3.6e-16 59.3 34.4 2.3e-10 40.6 5.8 2.8 3 1 0 3 3 3 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|284162931|ref|YP_003401554.1| - 1.3e-08 34.6 22.5 6.5e-07 29.1 2.8 2.6 2 1 0 2 2 2 2 Triose-phosphate Transporter family Mg_trans_NIPA PF05653.9 gi|284162931|ref|YP_003401554.1| - 5.3e-05 22.3 2.1 5.3e-05 22.3 1.4 2.7 3 0 0 3 3 3 2 Magnesium transporter NIPA Nuc_sug_transp PF04142.10 gi|284162931|ref|YP_003401554.1| - 5.6e-05 22.3 15.2 0.0043 16.2 1.6 2.6 2 2 0 2 2 2 2 Nucleotide-sugar transporter DUF914 PF06027.7 gi|284162931|ref|YP_003401554.1| - 0.00012 21.0 6.3 0.00012 21.0 4.4 2.0 1 1 0 2 2 2 1 Eukaryotic protein of unknown function (DUF914) Colicin_im PF03857.8 gi|284162931|ref|YP_003401554.1| - 0.016 14.9 3.1 0.016 14.9 2.2 2.9 2 2 0 2 2 2 0 Colicin immunity protein UPF0546 PF10639.4 gi|284162931|ref|YP_003401554.1| - 0.95 9.3 16.8 1 9.1 0.8 2.8 3 1 0 3 3 3 0 Uncharacterised protein family UPF0546 DUF1230 PF06799.6 gi|284162931|ref|YP_003401554.1| - 3.2 7.6 6.8 0.87 9.4 0.6 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1230) UAA PF08449.6 gi|284162931|ref|YP_003401554.1| - 6 5.6 23.8 1.7 7.4 4.9 2.1 1 1 1 2 2 2 0 UAA transporter family HTH_24 PF13412.1 gi|284162932|ref|YP_003401555.1| - 1.5e-09 37.1 0.1 9.8e-09 34.4 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284162932|ref|YP_003401555.1| - 8.2e-06 25.3 0.0 1.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|284162932|ref|YP_003401555.1| - 1.3e-05 24.6 0.0 2.8e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_3 PF01381.17 gi|284162932|ref|YP_003401555.1| - 0.00011 21.9 0.0 0.00024 20.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix TrmB PF01978.14 gi|284162932|ref|YP_003401555.1| - 0.00046 19.8 0.8 0.017 14.7 0.0 2.9 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|284162932|ref|YP_003401555.1| - 0.0013 18.3 0.0 0.0031 17.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|284162932|ref|YP_003401555.1| - 0.0014 18.1 0.0 0.0038 16.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284162932|ref|YP_003401555.1| - 0.0016 18.0 0.0 0.0035 16.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|284162932|ref|YP_003401555.1| - 0.0022 17.7 0.4 0.0046 16.7 0.1 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix HTH_28 PF13518.1 gi|284162932|ref|YP_003401555.1| - 0.0022 17.9 0.0 0.0042 17.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|284162932|ref|YP_003401555.1| - 0.0057 16.1 0.1 0.015 14.8 0.0 1.7 1 1 0 1 1 1 1 LexA DNA binding domain HTH_Crp_2 PF13545.1 gi|284162932|ref|YP_003401555.1| - 0.0062 16.3 0.0 0.018 14.8 0.0 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain GerE PF00196.14 gi|284162932|ref|YP_003401555.1| - 0.0066 15.7 0.0 0.014 14.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|284162932|ref|YP_003401555.1| - 0.0092 15.6 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|284162932|ref|YP_003401555.1| - 0.013 15.2 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.5 gi|284162932|ref|YP_003401555.1| - 0.014 15.5 0.0 0.031 14.4 0.0 1.7 1 0 0 1 1 1 0 KorB domain RPA_C PF08784.6 gi|284162932|ref|YP_003401555.1| - 0.026 14.9 0.0 0.077 13.4 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal HTH_29 PF13551.1 gi|284162932|ref|YP_003401555.1| - 0.036 14.2 0.0 0.11 12.6 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn helix TetR_N PF00440.18 gi|284162932|ref|YP_003401555.1| - 0.048 13.3 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Fe_dep_repress PF01325.14 gi|284162932|ref|YP_003401555.1| - 0.066 13.1 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.7 gi|284162932|ref|YP_003401555.1| - 0.069 12.6 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_IclR PF09339.5 gi|284162932|ref|YP_003401555.1| - 0.083 12.5 0.0 0.39 10.3 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_40 PF14493.1 gi|284162932|ref|YP_003401555.1| - 0.097 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|284162932|ref|YP_003401555.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|284162932|ref|YP_003401555.1| - 0.12 12.5 0.0 0.33 11.1 0.0 1.9 1 1 0 1 1 1 0 Transcriptional regulator HTH_Tnp_ISL3 PF13542.1 gi|284162932|ref|YP_003401555.1| - 0.12 11.5 0.0 0.27 10.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|284162932|ref|YP_003401555.1| - 0.14 12.5 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sdh_cyt PF01127.17 gi|284162933|ref|YP_003401556.1| - 8.7e-11 41.7 10.9 1e-10 41.4 7.5 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TrbC PF04956.8 gi|284162933|ref|YP_003401556.1| - 0.031 14.2 2.7 0.043 13.8 1.9 1.2 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF4239 PF14023.1 gi|284162933|ref|YP_003401556.1| - 1.5 8.1 7.0 0.51 9.6 3.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4239) DUF1469 PF07332.6 gi|284162933|ref|YP_003401556.1| - 6.9 6.4 6.8 0.8 9.4 1.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Sdh_cyt PF01127.17 gi|284162934|ref|YP_003401557.1| - 1.8e-11 43.9 7.8 2.3e-11 43.6 5.4 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Spore_permease PF03845.8 gi|284162934|ref|YP_003401557.1| - 0.0046 15.6 10.4 0.0058 15.3 7.2 1.1 1 0 0 1 1 1 1 Spore germination protein Ferric_reduct PF01794.14 gi|284162934|ref|YP_003401557.1| - 0.8 9.8 5.7 1.3 9.1 4.0 1.6 1 1 0 1 1 1 0 Ferric reductase like transmembrane component Fumarate_red_D PF02313.12 gi|284162934|ref|YP_003401557.1| - 1.5 8.6 4.9 2.1 8.2 3.4 1.3 1 0 0 1 1 1 0 Fumarate reductase subunit D DUF4006 PF13179.1 gi|284162934|ref|YP_003401557.1| - 6.2 6.4 6.0 0.6 9.7 0.9 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF4006) Fer2_3 PF13085.1 gi|284162935|ref|YP_003401558.1| - 4.6e-36 122.9 0.3 2.1e-35 120.8 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|284162935|ref|YP_003401558.1| - 5e-10 39.2 2.2 5e-10 39.2 1.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284162935|ref|YP_003401558.1| - 2.6e-08 34.0 1.9 2.6e-08 34.0 1.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|284162935|ref|YP_003401558.1| - 4.9e-08 32.6 1.0 1.2e-06 28.1 0.0 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_10 PF13237.1 gi|284162935|ref|YP_003401558.1| - 1.5e-07 31.1 2.7 1.5e-07 31.1 1.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284162935|ref|YP_003401558.1| - 1e-06 28.9 3.9 1e-06 28.9 2.7 2.5 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284162935|ref|YP_003401558.1| - 5.3e-06 26.5 15.2 0.00018 21.7 4.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284162935|ref|YP_003401558.1| - 3.3e-05 23.2 2.0 3.3e-05 23.2 1.4 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2_4 PF13510.1 gi|284162935|ref|YP_003401558.1| - 9.5e-05 22.1 0.2 0.0002 21.0 0.0 1.6 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_2 PF12797.2 gi|284162935|ref|YP_003401558.1| - 0.00031 20.4 1.7 0.00031 20.4 1.1 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|284162935|ref|YP_003401558.1| - 0.0006 20.1 9.2 0.0069 16.7 0.4 2.7 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284162935|ref|YP_003401558.1| - 0.001 19.7 4.5 0.001 19.7 3.1 2.6 3 1 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|284162935|ref|YP_003401558.1| - 0.0025 17.9 2.1 0.0025 17.9 1.5 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284162935|ref|YP_003401558.1| - 0.0038 17.0 0.9 0.0038 17.0 0.6 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284162935|ref|YP_003401558.1| - 0.021 14.6 6.2 0.056 13.3 0.3 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|284162935|ref|YP_003401558.1| - 0.2 12.3 21.8 0.1 13.1 3.2 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|284162936|ref|YP_003401559.1| - 1.8e-119 399.3 0.0 2.2e-119 399.0 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|284162936|ref|YP_003401559.1| - 1.2e-45 154.4 0.1 1.9e-45 153.8 0.1 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|284162936|ref|YP_003401559.1| - 4.4e-10 39.7 2.5 0.00083 19.2 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|284162936|ref|YP_003401559.1| - 0.00022 20.2 4.1 0.07 11.9 0.9 2.5 3 0 0 3 3 3 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|284162936|ref|YP_003401559.1| - 0.00029 20.0 2.0 0.015 14.3 0.1 2.9 3 0 0 3 3 3 1 Thi4 family DAO PF01266.19 gi|284162936|ref|YP_003401559.1| - 0.0011 17.9 2.1 0.094 11.6 1.5 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|284162936|ref|YP_003401559.1| - 0.0021 17.0 0.1 0.0037 16.2 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|284162936|ref|YP_003401559.1| - 0.0043 15.5 3.1 0.035 12.5 0.1 3.2 4 0 0 4 4 4 1 HI0933-like protein FAD_oxidored PF12831.2 gi|284162936|ref|YP_003401559.1| - 0.047 12.7 2.5 0.41 9.6 1.7 2.2 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|284162936|ref|YP_003401559.1| - 0.07 13.1 0.0 0.24 11.4 0.0 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Peripla_BP_6 PF13458.1 gi|284162937|ref|YP_003401560.1| - 2.1e-62 211.4 3.0 2.5e-62 211.2 2.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|284162937|ref|YP_003401560.1| - 1.6e-22 79.7 0.1 1.9e-22 79.5 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|284162937|ref|YP_003401560.1| - 1.1e-19 70.3 0.8 8.6e-19 67.5 0.6 1.9 1 1 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_4 PF13407.1 gi|284162937|ref|YP_003401560.1| - 1.2e-06 28.0 0.3 0.0016 17.8 0.0 2.4 2 0 0 2 2 2 2 Periplasmic binding protein domain ABC_sub_bind PF04392.7 gi|284162937|ref|YP_003401560.1| - 0.00023 20.1 0.0 0.00045 19.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter substrate binding protein Pyr_redox_2 PF07992.9 gi|284162937|ref|YP_003401560.1| - 0.029 14.2 0.2 0.75 9.6 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase BPD_transp_2 PF02653.11 gi|284162938|ref|YP_003401561.1| - 2.4e-38 131.6 48.5 2.8e-38 131.4 33.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|284162939|ref|YP_003401562.1| - 2.1e-30 105.6 28.8 2.1e-30 105.6 19.9 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2561 PF10812.3 gi|284162939|ref|YP_003401562.1| - 2.5 7.6 5.3 0.27 10.7 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2561) ABC_tran PF00005.22 gi|284162940|ref|YP_003401563.1| - 1.5e-29 103.0 0.0 2e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|284162940|ref|YP_003401563.1| - 4.3e-12 45.4 0.9 7.6e-12 44.6 0.1 1.9 2 0 0 2 2 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|284162940|ref|YP_003401563.1| - 3.1e-10 40.5 1.7 3.6e-05 23.8 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|284162940|ref|YP_003401563.1| - 1.8e-05 25.1 0.2 3.5e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284162940|ref|YP_003401563.1| - 6.3e-05 22.4 0.0 0.00011 21.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|284162940|ref|YP_003401563.1| - 0.00016 21.8 0.5 0.52 10.4 0.1 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284162940|ref|YP_003401563.1| - 0.00073 18.8 0.6 0.082 12.1 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|284162940|ref|YP_003401563.1| - 0.0051 15.4 0.3 1.9 7.0 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|284162940|ref|YP_003401563.1| - 0.0065 15.3 0.2 0.27 10.0 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_30 PF13604.1 gi|284162940|ref|YP_003401563.1| - 0.0072 15.9 0.1 0.019 14.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|284162940|ref|YP_003401563.1| - 0.0077 15.4 0.1 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|284162940|ref|YP_003401563.1| - 0.012 15.1 0.1 2 7.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|284162940|ref|YP_003401563.1| - 0.012 15.4 0.2 0.19 11.6 0.0 2.5 2 1 1 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|284162940|ref|YP_003401563.1| - 0.032 13.9 0.9 0.1 12.2 0.4 2.0 1 1 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|284162940|ref|YP_003401563.1| - 0.038 13.7 0.0 0.078 12.7 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|284162940|ref|YP_003401563.1| - 0.041 13.8 0.7 0.067 13.1 0.5 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|284162940|ref|YP_003401563.1| - 0.054 14.3 1.2 0.095 13.5 0.8 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|284162940|ref|YP_003401563.1| - 0.058 12.8 0.3 2.4 7.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SE PF00437.15 gi|284162940|ref|YP_003401563.1| - 0.079 11.8 0.1 0.2 10.5 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|284162940|ref|YP_003401563.1| - 0.08 12.6 0.9 1 9.0 0.1 2.5 1 1 1 2 2 2 0 NTPase MobB PF03205.9 gi|284162940|ref|YP_003401563.1| - 0.11 12.1 0.2 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|284162940|ref|YP_003401563.1| - 0.13 12.4 0.6 2.5 8.2 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|284162940|ref|YP_003401563.1| - 0.14 11.6 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|284162940|ref|YP_003401563.1| - 0.15 11.4 0.2 7.5 5.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|284162941|ref|YP_003401564.1| - 3.7e-31 108.2 0.0 7.5e-31 107.2 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|284162941|ref|YP_003401564.1| - 1.6e-15 57.8 0.8 6.9e-07 29.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|284162941|ref|YP_003401564.1| - 6.3e-06 25.6 0.1 1.5e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|284162941|ref|YP_003401564.1| - 1.2e-05 24.6 0.0 0.0022 17.1 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|284162941|ref|YP_003401564.1| - 1.4e-05 25.5 0.2 4.4e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284162941|ref|YP_003401564.1| - 5.4e-05 23.3 0.4 0.042 13.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|284162941|ref|YP_003401564.1| - 8.1e-05 21.9 0.8 0.0014 17.8 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|284162941|ref|YP_003401564.1| - 0.00071 18.2 1.9 0.051 12.1 0.2 2.9 3 0 0 3 3 3 1 Predicted ATPase of the ABC class NACHT PF05729.7 gi|284162941|ref|YP_003401564.1| - 0.0042 16.7 0.2 0.0084 15.7 0.1 1.5 1 0 0 1 1 1 1 NACHT domain cobW PF02492.14 gi|284162941|ref|YP_003401564.1| - 0.0053 16.2 0.1 0.0094 15.4 0.1 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|284162941|ref|YP_003401564.1| - 0.012 15.0 0.1 0.025 13.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|284162941|ref|YP_003401564.1| - 0.014 15.3 0.2 0.04 13.8 0.1 1.7 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|284162941|ref|YP_003401564.1| - 0.022 14.6 0.1 0.063 13.2 0.1 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.3 gi|284162941|ref|YP_003401564.1| - 0.025 11.9 0.3 0.034 11.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.1 gi|284162941|ref|YP_003401564.1| - 0.038 13.8 0.1 0.056 13.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|284162941|ref|YP_003401564.1| - 0.04 13.5 0.2 0.081 12.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Miro PF08477.8 gi|284162941|ref|YP_003401564.1| - 0.049 14.1 0.0 0.085 13.3 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein Arch_ATPase PF01637.13 gi|284162941|ref|YP_003401564.1| - 0.05 13.2 0.0 0.088 12.4 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|284162941|ref|YP_003401564.1| - 0.053 13.2 0.2 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain Dynamin_N PF00350.18 gi|284162941|ref|YP_003401564.1| - 0.07 12.9 0.1 0.23 11.2 0.1 1.8 1 1 0 1 1 1 0 Dynamin family Mg_chelatase PF01078.16 gi|284162941|ref|YP_003401564.1| - 0.077 12.1 0.1 0.16 11.1 0.0 1.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|284162941|ref|YP_003401564.1| - 0.078 13.1 0.1 0.24 11.5 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|284162941|ref|YP_003401564.1| - 0.079 12.5 0.1 0.24 10.9 0.1 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|284162941|ref|YP_003401564.1| - 0.084 12.5 0.4 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|284162941|ref|YP_003401564.1| - 0.089 11.9 0.1 0.15 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|284162941|ref|YP_003401564.1| - 0.11 12.0 0.2 0.2 11.0 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|284162941|ref|YP_003401564.1| - 0.12 11.3 0.2 0.2 10.5 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|284162941|ref|YP_003401564.1| - 0.14 12.9 0.1 0.36 11.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|284162941|ref|YP_003401564.1| - 0.15 12.0 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|284162941|ref|YP_003401564.1| - 0.24 10.8 1.0 0.56 9.5 0.3 1.8 2 0 0 2 2 2 0 AAA-like domain Malic_M PF03949.10 gi|284162942|ref|YP_003401565.1| - 1.3e-67 228.0 0.5 1.7e-67 227.7 0.3 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|284162942|ref|YP_003401565.1| - 3.6e-31 108.1 0.0 1e-28 100.1 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain UPF0066 PF01980.11 gi|284162943|ref|YP_003401566.1| - 1.5e-35 121.7 0.0 2.1e-35 121.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 dUTPase PF00692.14 gi|284162943|ref|YP_003401566.1| - 6.8e-09 35.2 0.0 1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|284162943|ref|YP_003401566.1| - 0.055 11.8 0.0 0.075 11.4 0.0 1.2 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CYTH PF01928.16 gi|284162944|ref|YP_003401567.1| - 1e-37 129.6 3.9 1.2e-37 129.4 2.7 1.0 1 0 0 1 1 1 1 CYTH domain PurS PF02700.9 gi|284162944|ref|YP_003401567.1| - 0.0023 17.8 3.0 0.01 15.7 0.0 2.9 2 1 0 3 3 3 1 Phosphoribosylformylglycinamidine (FGAM) synthase UTRA PF07702.8 gi|284162944|ref|YP_003401567.1| - 0.022 14.3 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 UTRA domain DUF1679 PF07914.6 gi|284162944|ref|YP_003401567.1| - 0.082 11.5 0.1 0.13 10.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) DUF2007 PF09413.5 gi|284162944|ref|YP_003401567.1| - 0.17 11.7 0.9 19 5.1 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF2007) Radical_SAM PF04055.16 gi|284162945|ref|YP_003401568.1| - 8e-14 52.1 0.4 6.9e-12 45.8 0.1 2.4 2 0 0 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.1 gi|284162945|ref|YP_003401568.1| - 3.3e-08 33.7 0.0 6.8e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|284162945|ref|YP_003401568.1| - 3.4e-06 27.0 0.0 3.4e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Glyco_tranf_2_3 PF13641.1 gi|284162946|ref|YP_003401569.1| - 2.1e-16 60.4 0.0 2.6e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|284162946|ref|YP_003401569.1| - 9.5e-15 54.8 0.2 1.2e-14 54.4 0.2 1.1 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|284162946|ref|YP_003401569.1| - 1.2e-08 34.8 0.2 1.8e-08 34.2 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|284162946|ref|YP_003401569.1| - 6.1e-05 22.3 0.0 8.8e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 SIS PF01380.17 gi|284162946|ref|YP_003401569.1| - 0.11 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 SIS domain TruB_N PF01509.13 gi|284162947|ref|YP_003401570.1| - 1.2e-27 96.9 0.7 7.2e-24 84.6 0.5 3.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|284162947|ref|YP_003401570.1| - 2.1e-20 72.4 0.0 5.2e-20 71.1 0.0 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|284162947|ref|YP_003401570.1| - 3.5e-19 68.3 6.8 5.6e-19 67.6 1.2 2.6 3 0 0 3 3 3 1 PUA domain GLTP PF08718.6 gi|284162950|ref|YP_003401572.1| - 0.011 15.7 0.5 0.016 15.2 0.4 1.2 1 0 0 1 1 1 0 Glycolipid transfer protein (GLTP) CDC37_N PF03234.9 gi|284162950|ref|YP_003401572.1| - 0.021 15.1 5.8 0.025 14.8 4.0 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding HlyD_2 PF12700.2 gi|284162950|ref|YP_003401572.1| - 0.046 12.8 2.0 0.044 12.9 1.4 1.1 1 0 0 1 1 1 0 HlyD family secretion protein Metal_resist PF13801.1 gi|284162950|ref|YP_003401572.1| - 0.2 11.6 4.8 0.8 9.6 3.3 1.8 1 1 0 1 1 1 0 Heavy-metal resistance Ycf1 PF05758.7 gi|284162950|ref|YP_003401572.1| - 0.23 9.1 6.4 0.26 8.9 4.5 1.0 1 0 0 1 1 1 0 Ycf1 DUF4011 PF13195.1 gi|284162950|ref|YP_003401572.1| - 0.63 10.0 6.3 0.61 10.0 3.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4011) ZapA PF05164.8 gi|284162950|ref|YP_003401572.1| - 0.98 9.4 7.3 0.68 9.9 4.1 1.6 1 1 1 2 2 2 0 Cell division protein ZapA Spore_II_R PF09551.5 gi|284162950|ref|YP_003401572.1| - 1.1 9.2 3.6 0.91 9.5 1.4 1.6 1 1 1 2 2 2 0 Stage II sporulation protein R (spore_II_R) Hydantoinase_A PF01968.13 gi|284162950|ref|YP_003401572.1| - 1.5 7.8 4.8 2 7.4 3.3 1.0 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase RELT PF12606.3 gi|284162950|ref|YP_003401572.1| - 3.7 6.7 0.0 3.7 6.7 0.0 3.1 3 0 0 3 3 3 0 Tumour necrosis factor receptor superfamily member 19 DUF2262 PF10020.4 gi|284162950|ref|YP_003401572.1| - 5.1 7.2 13.4 6.5 6.9 8.9 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2262) HSP70 PF00012.15 gi|284162950|ref|YP_003401572.1| - 5.2 4.8 11.0 5.8 4.6 7.7 1.0 1 0 0 1 1 1 0 Hsp70 protein GvpL_GvpF PF06386.6 gi|284162950|ref|YP_003401572.1| - 8.2 5.9 11.6 11 5.4 8.0 1.1 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF Cna_B PF05738.8 gi|284162951|ref|YP_003401573.1| - 0.095 12.4 0.1 0.24 11.1 0.1 1.7 1 0 0 1 1 1 0 Cna protein B-type domain MarR_2 PF12802.2 gi|284162951|ref|YP_003401573.1| - 0.16 11.6 0.3 10 5.8 0.0 2.7 2 0 0 2 2 2 0 MarR family HTH_45 PF14947.1 gi|284162951|ref|YP_003401573.1| - 0.18 11.6 2.4 0.69 9.7 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix Peptidase_C48 PF02902.14 gi|284162951|ref|YP_003401573.1| - 0.22 11.1 1.6 0.46 10.0 0.2 2.0 2 0 0 2 2 2 0 Ulp1 protease family, C-terminal catalytic domain