# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- THUMP PF02926.12 gi|307594150|ref|YP_003900467.1| - 3.3e-05 23.7 0.0 3.9e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 THUMP domain Cdc6_C PF09079.6 gi|307594151|ref|YP_003900468.1| - 1.8e-20 72.4 0.0 4.7e-20 71.1 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|307594151|ref|YP_003900468.1| - 1.3e-09 38.3 0.0 2e-08 34.4 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|307594151|ref|YP_003900468.1| - 1.5e-06 28.3 0.1 8.3e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|307594151|ref|YP_003900468.1| - 0.0006 19.5 0.1 0.0013 18.4 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|307594151|ref|YP_003900468.1| - 0.0023 16.8 0.0 0.0039 16.1 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_19 PF13245.1 gi|307594151|ref|YP_003900468.1| - 0.016 14.9 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|307594151|ref|YP_003900468.1| - 0.027 13.9 0.0 0.053 12.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Bac_DnaA PF00308.13 gi|307594151|ref|YP_003900468.1| - 0.033 13.8 0.0 0.48 10.0 0.0 2.4 3 0 0 3 3 3 0 Bacterial dnaA protein 6PF2K PF01591.13 gi|307594151|ref|YP_003900468.1| - 0.038 13.0 0.0 0.077 12.0 0.0 1.5 1 1 0 1 1 1 0 6-phosphofructo-2-kinase AAA PF00004.24 gi|307594151|ref|YP_003900468.1| - 0.041 14.0 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|307594151|ref|YP_003900468.1| - 0.063 14.1 0.4 0.18 12.6 0.3 2.1 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|307594151|ref|YP_003900468.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 HTH_20 PF12840.2 gi|307594152|ref|YP_003900469.1| - 1.3e-05 24.8 0.0 2.3e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|307594152|ref|YP_003900469.1| - 2e-05 24.1 0.2 3.9e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|307594152|ref|YP_003900469.1| - 0.00063 19.3 0.4 0.00077 19.1 0.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|307594152|ref|YP_003900469.1| - 0.0033 16.7 0.2 0.0049 16.2 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2551 PF10826.3 gi|307594152|ref|YP_003900469.1| - 0.0043 16.9 0.2 0.0053 16.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) HTH_11 PF08279.7 gi|307594152|ref|YP_003900469.1| - 0.013 15.1 0.4 0.018 14.6 0.3 1.3 1 0 0 1 1 1 0 HTH domain Mga PF05043.8 gi|307594152|ref|YP_003900469.1| - 0.013 15.7 0.5 0.022 15.0 0.0 1.5 2 0 0 2 2 2 0 Mga helix-turn-helix domain KH_5 PF13184.1 gi|307594152|ref|YP_003900469.1| - 0.02 14.6 0.3 0.054 13.2 0.2 1.9 1 1 0 1 1 1 0 NusA-like KH domain HTH_Crp_2 PF13545.1 gi|307594152|ref|YP_003900469.1| - 0.03 14.0 0.1 0.057 13.2 0.1 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|307594152|ref|YP_003900469.1| - 0.093 12.8 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_28 PF13518.1 gi|307594152|ref|YP_003900469.1| - 0.15 12.1 0.9 0.2 11.6 0.5 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HpcH_HpaI PF03328.9 gi|307594153|ref|YP_003900470.1| - 1.3e-34 118.9 0.1 3.4e-33 114.3 0.1 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|307594153|ref|YP_003900470.1| - 2.4e-15 56.2 0.0 1.1e-09 37.6 0.0 2.1 1 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold BH4 PF02180.12 gi|307594153|ref|YP_003900470.1| - 0.034 13.6 0.1 0.067 12.6 0.1 1.5 1 0 0 1 1 1 0 Bcl-2 homology region 4 ADH_N PF08240.7 gi|307594154|ref|YP_003900471.1| - 4.1e-22 77.9 0.1 2.9e-21 75.2 0.1 2.1 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|307594154|ref|YP_003900471.1| - 3.6e-18 65.3 0.1 5.9e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|307594154|ref|YP_003900471.1| - 1.4e-11 45.4 0.9 2.4e-11 44.6 0.6 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NS3_envE PF02723.9 gi|307594154|ref|YP_003900471.1| - 0.046 13.6 0.1 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Non-structural protein NS3/Small envelope protein E Epimerase PF01370.16 gi|307594154|ref|YP_003900471.1| - 0.058 12.8 0.1 0.086 12.2 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|307594154|ref|YP_003900471.1| - 0.1 12.5 0.4 0.14 12.1 0.3 1.2 1 0 0 1 1 1 0 NADH(P)-binding Glycos_transf_2 PF00535.21 gi|307594155|ref|YP_003900472.1| - 1.2e-23 83.6 0.0 1.6e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|307594155|ref|YP_003900472.1| - 6.7e-07 29.3 0.1 9.6e-07 28.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|307594155|ref|YP_003900472.1| - 0.004 16.2 0.0 0.0057 15.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 UPF0020 PF01170.13 gi|307594156|ref|YP_003900473.1| - 1.3e-32 112.8 0.0 1.9e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|307594156|ref|YP_003900473.1| - 3.4e-12 46.4 0.0 5.9e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|307594156|ref|YP_003900473.1| - 2.4e-09 36.7 0.0 3.7e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain THUMP PF02926.12 gi|307594156|ref|YP_003900473.1| - 0.0049 16.7 0.0 0.01 15.7 0.0 1.6 1 1 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.1 gi|307594156|ref|YP_003900473.1| - 0.0051 16.4 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307594156|ref|YP_003900473.1| - 0.0062 17.1 0.0 0.011 16.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|307594156|ref|YP_003900473.1| - 0.13 11.6 0.0 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 DNA methylase DUF2192 PF09958.4 gi|307594157|ref|YP_003900474.1| - 3.2e-69 232.6 2.5 3.7e-69 232.4 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Ribosomal_L16 PF00252.13 gi|307594158|ref|YP_003900475.1| - 3.3e-34 117.5 0.1 3.8e-34 117.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e HTH_45 PF14947.1 gi|307594159|ref|YP_003900476.1| - 1.7e-09 37.3 0.0 2.1e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|307594159|ref|YP_003900476.1| - 0.00034 20.2 0.0 0.00048 19.7 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|307594159|ref|YP_003900476.1| - 0.00066 19.1 0.0 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|307594159|ref|YP_003900476.1| - 0.0014 18.0 0.0 0.0025 17.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HemN_C PF06969.11 gi|307594159|ref|YP_003900476.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain HTH_Crp_2 PF13545.1 gi|307594159|ref|YP_003900476.1| - 0.023 14.4 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FeoC PF09012.5 gi|307594159|ref|YP_003900476.1| - 0.029 14.0 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF977 PF06163.6 gi|307594159|ref|YP_003900476.1| - 0.039 13.7 0.0 0.048 13.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) EAP30 PF04157.11 gi|307594159|ref|YP_003900476.1| - 0.11 11.6 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_27 PF13463.1 gi|307594159|ref|YP_003900476.1| - 0.12 12.7 0.1 0.26 11.6 0.1 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF1129 PF06570.6 gi|307594160|ref|YP_003900477.1| - 0.02 14.2 1.8 0.02 14.2 1.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF3975 PF13126.1 gi|307594160|ref|YP_003900477.1| - 4.2 7.5 15.6 1.5 9.0 2.4 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3975) NAC PF01849.13 gi|307594162|ref|YP_003900479.1| - 1.3e-09 37.4 0.0 4.2e-09 35.7 0.0 1.9 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|307594162|ref|YP_003900479.1| - 7.4e-09 35.2 0.0 2.3e-08 33.6 0.0 1.9 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|307594162|ref|YP_003900479.1| - 0.00019 20.8 0.0 0.0017 17.8 0.0 2.1 2 0 0 2 2 2 1 UBA-like domain Thioredoxin_4 PF13462.1 gi|307594163|ref|YP_003900480.1| - 2.1e-11 44.1 0.0 6.3e-11 42.5 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|307594163|ref|YP_003900480.1| - 0.0081 16.3 0.1 1.7 8.8 0.0 2.4 2 0 0 2 2 2 1 Thioredoxin-like domain DUF3357 PF11837.3 gi|307594163|ref|YP_003900480.1| - 0.037 13.8 0.8 0.056 13.3 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) DUF1628 PF07790.6 gi|307594163|ref|YP_003900480.1| - 0.038 14.7 0.2 0.079 13.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) CCSMST1 PF15013.1 gi|307594163|ref|YP_003900480.1| - 0.1 12.5 1.3 0.14 12.0 0.1 1.9 2 0 0 2 2 2 0 CCSMST1 family DSBA PF01323.15 gi|307594163|ref|YP_003900480.1| - 0.14 11.6 1.1 0.27 10.7 0.2 1.8 2 0 0 2 2 2 0 DSBA-like thioredoxin domain SpoIIIAH PF12685.2 gi|307594163|ref|YP_003900480.1| - 0.16 11.4 0.3 0.19 11.2 0.2 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein ABC2_membrane_5 PF13346.1 gi|307594163|ref|YP_003900480.1| - 0.19 10.9 8.1 0.21 10.8 1.5 2.4 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF508 PF04370.7 gi|307594163|ref|YP_003900480.1| - 0.71 9.4 3.7 1.3 8.5 2.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF508) tRNA-synt_2c PF01411.14 gi|307594165|ref|YP_003900482.1| - 4.6e-114 381.7 0.0 5.8e-114 381.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|307594165|ref|YP_003900482.1| - 6.5e-13 48.3 0.2 1.3e-12 47.4 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.10 gi|307594165|ref|YP_003900482.1| - 0.00067 18.8 0.2 0.0021 17.2 0.1 1.6 1 1 1 2 2 2 1 Glycyl-tRNA synthetase alpha subunit Lactamase_B PF00753.22 gi|307594166|ref|YP_003900483.1| - 6.6e-15 55.2 3.8 1.1e-14 54.5 2.6 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|307594166|ref|YP_003900483.1| - 1.6e-08 34.2 0.1 2.3e-08 33.8 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Ribosomal_L10 PF00466.15 gi|307594167|ref|YP_003900484.1| - 2.6e-20 72.2 0.4 9.5e-20 70.4 0.0 2.1 2 0 0 2 2 2 1 Ribosomal protein L10 7TMR-HDED PF07697.6 gi|307594167|ref|YP_003900484.1| - 0.0092 15.7 0.7 0.0092 15.7 0.5 2.8 3 0 0 3 3 3 1 7TM-HD extracellular TraH PF06122.6 gi|307594167|ref|YP_003900484.1| - 0.11 11.2 0.3 0.16 10.7 0.2 1.2 1 0 0 1 1 1 0 Conjugative relaxosome accessory transposon protein DUF4326 PF14216.1 gi|307594167|ref|YP_003900484.1| - 0.13 12.8 0.1 0.34 11.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4326) Ribosomal_L1 PF00687.16 gi|307594168|ref|YP_003900485.1| - 2.2e-44 151.4 1.0 2.5e-44 151.2 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.14 gi|307594169|ref|YP_003900486.1| - 6.3e-16 58.2 0.1 1.1e-15 57.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|307594169|ref|YP_003900486.1| - 4.5e-07 29.2 0.8 1.1e-06 27.9 0.5 1.7 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Spt5-NGN PF03439.8 gi|307594170|ref|YP_003900487.1| - 8.7e-17 60.6 0.1 7.8e-16 57.6 0.0 2.0 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|307594170|ref|YP_003900487.1| - 0.00024 20.6 2.1 0.00024 20.6 1.5 2.1 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|307594170|ref|YP_003900487.1| - 0.017 15.3 0.0 0.036 14.3 0.0 1.6 1 0 0 1 1 1 0 Transcription termination factor nusG Flavi_NS4A PF01350.12 gi|307594171|ref|YP_003900488.1| - 0.09 12.3 2.0 0.19 11.2 0.3 1.9 1 1 1 2 2 2 0 Flavivirus non-structural protein NS4A Coiled-coil_56 PF09813.4 gi|307594171|ref|YP_003900488.1| - 0.14 12.1 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 56 Abhydrolase_9_N PF15420.1 gi|307594171|ref|YP_003900488.1| - 0.22 11.2 3.1 0.26 11.0 2.1 1.1 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Ferric_reduct PF01794.14 gi|307594171|ref|YP_003900488.1| - 0.39 10.8 4.4 0.48 10.5 3.0 1.2 1 0 0 1 1 1 0 Ferric reductase like transmembrane component NfeD PF01957.13 gi|307594171|ref|YP_003900488.1| - 0.61 10.2 4.1 0.74 9.9 2.9 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF2207 PF09972.4 gi|307594171|ref|YP_003900488.1| - 1.3 7.5 5.9 1.4 7.3 4.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) zf-DHHC PF01529.15 gi|307594171|ref|YP_003900488.1| - 2.2 7.6 5.0 2.6 7.4 3.5 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF2516 PF10724.4 gi|307594171|ref|YP_003900488.1| - 3.6 7.6 8.2 0.22 11.5 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2516) DUF3671 PF12420.3 gi|307594171|ref|YP_003900488.1| - 4.5 7.3 8.5 6.1 6.8 5.9 1.2 1 0 0 1 1 1 0 Protein of unknown function SRP54 PF00448.17 gi|307594172|ref|YP_003900489.1| - 1.4e-67 227.0 0.0 1.8e-67 226.6 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|307594172|ref|YP_003900489.1| - 1.7e-07 31.2 0.7 3.1e-07 30.4 0.5 1.4 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain MobB PF03205.9 gi|307594172|ref|YP_003900489.1| - 0.00031 20.4 0.0 0.00082 19.0 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|307594172|ref|YP_003900489.1| - 0.00063 19.2 0.2 0.0037 16.7 0.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|307594172|ref|YP_003900489.1| - 0.00071 19.1 0.1 0.0017 17.8 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|307594172|ref|YP_003900489.1| - 0.0011 19.1 0.0 0.0041 17.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|307594172|ref|YP_003900489.1| - 0.002 17.7 0.1 0.0031 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|307594172|ref|YP_003900489.1| - 0.0021 16.8 0.8 0.071 11.8 0.1 2.5 1 1 0 2 2 2 1 ArgK protein AAA_24 PF13479.1 gi|307594172|ref|YP_003900489.1| - 0.014 14.9 0.0 0.035 13.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|307594172|ref|YP_003900489.1| - 0.017 15.3 0.0 0.026 14.8 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|307594172|ref|YP_003900489.1| - 0.02 14.6 0.3 0.054 13.2 0.1 1.8 1 1 1 2 2 2 0 Part of AAA domain IstB_IS21 PF01695.12 gi|307594172|ref|YP_003900489.1| - 0.021 14.2 0.0 0.039 13.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.1 gi|307594172|ref|YP_003900489.1| - 0.022 14.7 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|307594172|ref|YP_003900489.1| - 0.023 14.2 0.0 0.051 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|307594172|ref|YP_003900489.1| - 0.024 14.3 0.2 0.22 11.1 0.1 2.3 1 1 1 2 2 2 0 NTPase PPK2 PF03976.9 gi|307594172|ref|YP_003900489.1| - 0.033 13.4 0.0 0.082 12.1 0.0 1.6 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) Arch_ATPase PF01637.13 gi|307594172|ref|YP_003900489.1| - 0.034 13.8 0.1 0.09 12.4 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase AAA_16 PF13191.1 gi|307594172|ref|YP_003900489.1| - 0.034 14.1 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Helicase_RecD PF05127.9 gi|307594172|ref|YP_003900489.1| - 0.036 13.7 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 Helicase AAA_23 PF13476.1 gi|307594172|ref|YP_003900489.1| - 0.045 14.0 0.2 0.1 12.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain APS_kinase PF01583.15 gi|307594172|ref|YP_003900489.1| - 0.067 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA PF00004.24 gi|307594172|ref|YP_003900489.1| - 0.069 13.3 0.2 0.17 12.0 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|307594172|ref|YP_003900489.1| - 0.07 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF507 PF04368.8 gi|307594172|ref|YP_003900489.1| - 0.089 12.4 1.1 0.74 9.4 0.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF507) AAA_33 PF13671.1 gi|307594172|ref|YP_003900489.1| - 0.089 12.6 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|307594172|ref|YP_003900489.1| - 0.1 11.6 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.17 gi|307594172|ref|YP_003900489.1| - 0.13 11.0 0.0 0.25 10.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Prefoldin PF02996.12 gi|307594173|ref|YP_003900490.1| - 6.5e-17 61.2 0.1 1.1e-16 60.5 0.1 1.4 1 1 0 1 1 1 1 Prefoldin subunit Cortex-I_coil PF09304.5 gi|307594173|ref|YP_003900490.1| - 0.0019 18.2 3.6 0.088 12.8 0.3 2.1 2 0 0 2 2 2 2 Cortexillin I, coiled coil DUF3584 PF12128.3 gi|307594173|ref|YP_003900490.1| - 0.0033 14.8 1.5 0.074 10.3 0.2 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) NPV_P10 PF05531.7 gi|307594173|ref|YP_003900490.1| - 0.0077 16.4 4.0 0.12 12.6 0.0 2.3 2 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Prefoldin_2 PF01920.15 gi|307594173|ref|YP_003900490.1| - 0.013 15.2 0.3 1.4 8.7 0.1 2.5 1 1 1 2 2 2 0 Prefoldin subunit Tektin PF03148.9 gi|307594173|ref|YP_003900490.1| - 0.022 13.2 3.9 0.059 11.8 0.1 2.0 2 0 0 2 2 2 0 Tektin family Osmo_CC PF08946.5 gi|307594173|ref|YP_003900490.1| - 0.061 13.3 3.1 0.98 9.4 0.1 3.0 2 2 1 3 3 3 0 Osmosensory transporter coiled coil BLOC1_2 PF10046.4 gi|307594173|ref|YP_003900490.1| - 0.078 13.1 4.0 1.5 9.0 0.2 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 APC_CDC26 PF10471.4 gi|307594173|ref|YP_003900490.1| - 0.12 13.0 0.1 0.12 13.0 0.1 2.3 2 1 0 2 2 2 0 Anaphase-promoting complex APC subunit 1 DUF4164 PF13747.1 gi|307594173|ref|YP_003900490.1| - 0.14 12.3 2.9 2.4 8.3 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) MerR-DNA-bind PF09278.6 gi|307594173|ref|YP_003900490.1| - 0.23 11.9 6.5 4.5 7.7 1.7 2.7 2 1 0 2 2 2 0 MerR, DNA binding Spc7 PF08317.6 gi|307594173|ref|YP_003900490.1| - 0.28 9.8 2.4 4.1 5.9 0.0 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein Ribosomal_L18ae PF01775.12 gi|307594174|ref|YP_003900491.1| - 1.4e-10 41.1 0.1 1.9e-10 40.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain DUF1801 PF08818.6 gi|307594174|ref|YP_003900491.1| - 0.0036 17.3 0.0 0.0045 17.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DU1801) EXOSC1 PF10447.4 gi|307594174|ref|YP_003900491.1| - 0.14 12.1 0.2 0.22 11.5 0.1 1.4 1 1 0 1 1 1 0 Exosome component EXOSC1/CSL4 HTH_3 PF01381.17 gi|307594175|ref|YP_003900492.1| - 1.6e-12 47.0 0.7 2.7e-12 46.3 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|307594175|ref|YP_003900492.1| - 1.8e-10 40.7 0.1 3.2e-10 39.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|307594175|ref|YP_003900492.1| - 1.5e-09 37.9 0.2 3e-09 36.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|307594175|ref|YP_003900492.1| - 8.6e-06 25.3 0.4 1.7e-05 24.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|307594175|ref|YP_003900492.1| - 0.011 15.8 0.5 0.023 14.8 0.3 1.5 1 0 0 1 1 1 0 Archaeal TRASH domain MMR_HSR1 PF01926.18 gi|307594176|ref|YP_003900493.1| - 9.2e-15 54.6 0.0 1.9e-14 53.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|307594176|ref|YP_003900493.1| - 2.3e-13 50.0 0.0 4.7e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|307594176|ref|YP_003900493.1| - 1e-05 24.8 0.1 2.6e-05 23.5 0.0 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|307594176|ref|YP_003900493.1| - 0.005 16.3 0.0 0.82 9.0 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|307594176|ref|YP_003900493.1| - 0.014 15.9 0.0 0.035 14.5 0.0 1.8 1 1 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|307594176|ref|YP_003900493.1| - 0.015 14.7 0.0 2.4 7.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|307594176|ref|YP_003900493.1| - 0.018 14.9 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|307594176|ref|YP_003900493.1| - 0.03 13.5 0.1 0.11 11.6 0.1 1.8 1 1 0 1 1 1 0 ADP-ribosylation factor family MobB PF03205.9 gi|307594176|ref|YP_003900493.1| - 0.033 13.8 0.0 0.065 12.9 0.0 1.6 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Pox_A6 PF04924.7 gi|307594176|ref|YP_003900493.1| - 0.044 12.5 0.0 0.067 11.9 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A6 protein ABC_tran PF00005.22 gi|307594176|ref|YP_003900493.1| - 0.11 12.8 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 ABC transporter SRPRB PF09439.5 gi|307594176|ref|YP_003900493.1| - 0.13 11.5 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit cobW PF02492.14 gi|307594176|ref|YP_003900493.1| - 0.13 11.6 0.5 0.92 8.9 0.0 2.2 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|307594176|ref|YP_003900493.1| - 0.33 11.7 1.6 0.53 11.1 0.0 2.3 2 2 0 2 2 2 0 AAA domain Glycos_transf_4 PF00953.16 gi|307594176|ref|YP_003900493.1| - 0.35 10.6 1.5 0.55 10.0 1.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 4 TFIIE_alpha PF02002.12 gi|307594177|ref|YP_003900494.1| - 7.2e-10 38.3 0.4 1.3e-09 37.5 0.3 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.15 gi|307594177|ref|YP_003900494.1| - 0.0039 17.2 0.1 0.012 15.7 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|307594177|ref|YP_003900494.1| - 0.0086 16.3 0.1 0.019 15.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|307594177|ref|YP_003900494.1| - 0.01 15.5 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|307594177|ref|YP_003900494.1| - 0.014 15.0 0.4 0.023 14.2 0.3 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|307594177|ref|YP_003900494.1| - 0.018 14.3 0.2 0.035 13.4 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|307594177|ref|YP_003900494.1| - 0.024 14.2 0.2 0.047 13.3 0.1 1.4 1 0 0 1 1 1 0 MarR family DASH_Dad1 PF08649.5 gi|307594177|ref|YP_003900494.1| - 0.05 13.2 0.2 0.1 12.3 0.2 1.5 1 0 0 1 1 1 0 DASH complex subunit Dad1 HTH_Crp_2 PF13545.1 gi|307594177|ref|YP_003900494.1| - 0.075 12.8 0.1 0.33 10.7 0.0 2.2 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain RP-C PF03428.8 gi|307594177|ref|YP_003900494.1| - 0.093 12.1 0.1 0.26 10.7 0.0 1.7 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_20 PF12840.2 gi|307594177|ref|YP_003900494.1| - 0.14 12.0 0.4 0.14 12.0 0.3 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Pyr_redox_2 PF07992.9 gi|307594178|ref|YP_003900495.1| - 1.7e-36 125.9 7.6 1.9e-34 119.3 5.2 4.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|307594178|ref|YP_003900495.1| - 3.7e-25 88.1 6.8 1.1e-22 80.1 0.4 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|307594178|ref|YP_003900495.1| - 1.6e-16 60.2 2.9 2.2e-16 59.8 0.0 2.6 4 0 0 4 4 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|307594178|ref|YP_003900495.1| - 3e-13 49.3 10.3 1.4e-05 24.2 0.1 3.5 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|307594178|ref|YP_003900495.1| - 1.2e-09 38.0 1.2 0.0013 18.6 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|307594178|ref|YP_003900495.1| - 1.3e-09 38.4 1.0 8.2e-06 26.0 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|307594178|ref|YP_003900495.1| - 1.6e-08 33.4 7.4 0.028 12.9 0.3 4.2 3 1 1 4 4 4 3 HI0933-like protein FAD_binding_2 PF00890.19 gi|307594178|ref|YP_003900495.1| - 4.1e-06 25.8 5.9 0.036 12.9 0.4 4.0 4 0 0 4 4 4 2 FAD binding domain GIDA PF01134.17 gi|307594178|ref|YP_003900495.1| - 1.3e-05 24.3 6.9 0.087 11.6 0.0 3.9 4 0 0 4 4 4 2 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|307594178|ref|YP_003900495.1| - 4.4e-05 22.5 1.0 0.017 14.0 0.2 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|307594178|ref|YP_003900495.1| - 0.00017 20.8 0.2 0.016 14.3 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|307594178|ref|YP_003900495.1| - 0.00021 20.3 0.2 0.025 13.5 0.0 2.7 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|307594178|ref|YP_003900495.1| - 0.00067 19.2 0.7 0.6 9.6 0.1 2.6 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|307594178|ref|YP_003900495.1| - 0.0015 18.7 1.5 1.8 8.8 0.1 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding TrkA_N PF02254.13 gi|307594178|ref|YP_003900495.1| - 0.0027 17.7 0.2 0.22 11.5 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain FAD_oxidored PF12831.2 gi|307594178|ref|YP_003900495.1| - 0.0029 16.7 11.0 0.26 10.3 0.5 3.6 3 1 1 4 4 4 2 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|307594178|ref|YP_003900495.1| - 0.0038 16.6 0.1 0.014 14.8 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|307594178|ref|YP_003900495.1| - 0.0048 16.0 1.2 0.11 11.4 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|307594178|ref|YP_003900495.1| - 0.0082 15.9 8.4 4.9 6.8 0.1 4.1 3 1 1 4 4 4 1 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|307594178|ref|YP_003900495.1| - 0.014 15.1 0.3 0.074 12.6 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|307594178|ref|YP_003900495.1| - 0.039 13.7 0.2 1 9.0 0.0 2.9 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.9 gi|307594178|ref|YP_003900495.1| - 0.18 10.3 3.3 0.28 9.7 0.0 2.4 3 0 0 3 3 3 0 Tryptophan halogenase Shikimate_DH PF01488.15 gi|307594178|ref|YP_003900495.1| - 0.53 10.3 2.7 17 5.5 0.0 3.0 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase G_glu_transpept PF01019.16 gi|307594180|ref|YP_003900497.1| - 2.7e-126 422.0 0.0 3.1e-126 421.8 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Peripla_BP_2 PF01497.13 gi|307594181|ref|YP_003900498.1| - 3.4e-28 98.3 0.0 4.5e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|307594182|ref|YP_003900499.1| - 2.7e-68 230.0 41.4 3.1e-68 229.8 28.7 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|307594182|ref|YP_003900499.1| - 3.7e-05 23.1 22.5 3.7e-05 23.1 15.6 2.0 1 1 0 1 1 1 1 ABC 3 transport family Gly-zipper_YMGG PF13441.1 gi|307594182|ref|YP_003900499.1| - 2 7.9 5.3 1.2 8.6 1.9 1.8 1 1 0 1 1 1 0 YMGG-like Gly-zipper ABC_tran PF00005.22 gi|307594183|ref|YP_003900500.1| - 2.1e-24 86.3 0.0 2.9e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307594183|ref|YP_003900500.1| - 7.2e-15 55.7 0.1 1.8e-07 31.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|307594183|ref|YP_003900500.1| - 4.4e-09 35.8 0.0 0.00079 18.7 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|307594183|ref|YP_003900500.1| - 7.3e-07 28.5 0.0 0.0097 14.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Arch_ATPase PF01637.13 gi|307594183|ref|YP_003900500.1| - 1.5e-05 24.8 0.0 2e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|307594183|ref|YP_003900500.1| - 2.8e-05 24.5 0.0 3.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|307594183|ref|YP_003900500.1| - 0.00014 21.7 0.0 0.0011 18.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|307594183|ref|YP_003900500.1| - 0.00034 20.0 0.0 0.00066 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|307594183|ref|YP_003900500.1| - 0.00062 19.9 0.6 0.0087 16.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|307594183|ref|YP_003900500.1| - 0.00087 18.7 0.0 0.015 14.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|307594183|ref|YP_003900500.1| - 0.0012 19.0 0.0 0.0086 16.2 0.0 2.3 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|307594183|ref|YP_003900500.1| - 0.0032 17.4 0.0 0.0084 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|307594183|ref|YP_003900500.1| - 0.0042 16.8 0.0 0.013 15.2 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|307594183|ref|YP_003900500.1| - 0.0046 16.4 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|307594183|ref|YP_003900500.1| - 0.0061 16.4 0.0 0.015 15.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|307594183|ref|YP_003900500.1| - 0.0061 16.2 0.2 0.023 14.3 0.0 1.8 2 0 0 2 2 2 1 NACHT domain cobW PF02492.14 gi|307594183|ref|YP_003900500.1| - 0.0073 15.7 0.2 0.015 14.7 0.1 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|307594183|ref|YP_003900500.1| - 0.015 15.0 0.0 0.049 13.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Zeta_toxin PF06414.7 gi|307594183|ref|YP_003900500.1| - 0.022 13.8 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|307594183|ref|YP_003900500.1| - 0.025 15.4 0.1 0.082 13.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|307594183|ref|YP_003900500.1| - 0.039 13.3 0.0 0.2 11.0 0.0 1.9 2 0 0 2 2 2 0 MutS domain V NB-ARC PF00931.17 gi|307594183|ref|YP_003900500.1| - 0.045 12.6 0.0 0.099 11.4 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain T2SE PF00437.15 gi|307594183|ref|YP_003900500.1| - 0.046 12.6 0.0 0.066 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP_bind_1 PF03029.12 gi|307594183|ref|YP_003900500.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SbcCD_C PF13558.1 gi|307594183|ref|YP_003900500.1| - 0.1 12.5 0.0 1.3 8.9 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|307594183|ref|YP_003900500.1| - 0.13 10.8 0.1 1.2 7.6 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class FtsK_SpoIIIE PF01580.13 gi|307594183|ref|YP_003900500.1| - 0.13 11.6 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|307594183|ref|YP_003900500.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AFOR_C PF01314.13 gi|307594184|ref|YP_003900501.1| - 2.3e-117 391.9 0.4 2.7e-117 391.6 0.3 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|307594184|ref|YP_003900501.1| - 8.2e-75 250.5 0.0 2.1e-74 249.2 0.0 1.7 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Cob_adeno_trans PF01923.13 gi|307594185|ref|YP_003900502.1| - 6.5e-06 26.0 0.0 9.4e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Cobalamin adenosyltransferase MM_CoA_mutase PF01642.17 gi|307594186|ref|YP_003900503.1| - 1.1e-190 634.1 0.0 1.3e-190 633.9 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase RE_AccI PF09545.5 gi|307594186|ref|YP_003900503.1| - 0.0066 15.0 0.0 0.01 14.4 0.0 1.2 1 0 0 1 1 1 1 AccI restriction endonuclease B12-binding PF02310.14 gi|307594187|ref|YP_003900504.1| - 1.9e-24 85.8 0.2 2.2e-24 85.6 0.2 1.1 1 0 0 1 1 1 1 B12 binding domain PGM_PMM_I PF02878.11 gi|307594187|ref|YP_003900504.1| - 0.0012 18.2 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I OKR_DC_1_N PF03709.10 gi|307594187|ref|YP_003900504.1| - 0.017 15.1 0.0 0.023 14.7 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain FMN_dh PF01070.13 gi|307594187|ref|YP_003900504.1| - 0.046 12.5 0.1 0.33 9.7 0.0 1.8 1 1 1 2 2 2 0 FMN-dependent dehydrogenase NMO PF03060.10 gi|307594187|ref|YP_003900504.1| - 0.058 12.5 0.5 1.4 8.0 0.1 2.0 1 1 1 2 2 2 0 Nitronate monooxygenase ArgK PF03308.11 gi|307594188|ref|YP_003900505.1| - 2.6e-75 252.6 0.0 2.5e-74 249.4 0.0 2.0 2 0 0 2 2 2 1 ArgK protein Glyoxalase_4 PF13669.1 gi|307594188|ref|YP_003900505.1| - 8.5e-20 70.7 0.0 1.4e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|307594188|ref|YP_003900505.1| - 1.9e-10 40.9 0.0 3.1e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain cobW PF02492.14 gi|307594188|ref|YP_003900505.1| - 5.2e-09 35.8 0.1 9.4e-08 31.6 0.0 2.6 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Glyoxalase_2 PF12681.2 gi|307594188|ref|YP_003900505.1| - 7e-09 36.2 0.0 0.0023 18.4 0.0 2.4 1 1 1 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|307594188|ref|YP_003900505.1| - 9.5e-09 35.3 0.0 1.8e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AAA_17 PF13207.1 gi|307594188|ref|YP_003900505.1| - 0.00011 23.0 0.2 0.0014 19.4 0.1 2.6 3 0 0 3 3 2 1 AAA domain DUF87 PF01935.12 gi|307594188|ref|YP_003900505.1| - 0.00013 21.8 0.0 0.00027 20.8 0.0 1.8 2 1 0 2 2 1 1 Domain of unknown function DUF87 ABC_tran PF00005.22 gi|307594188|ref|YP_003900505.1| - 0.00031 21.0 0.0 0.00062 20.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter T2SE PF00437.15 gi|307594188|ref|YP_003900505.1| - 0.00032 19.6 0.1 0.0013 17.7 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|307594188|ref|YP_003900505.1| - 0.00033 20.3 0.0 0.0012 18.5 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|307594188|ref|YP_003900505.1| - 0.00036 20.8 1.5 0.016 15.5 0.2 3.0 3 1 0 3 3 3 1 AAA domain CbiA PF01656.18 gi|307594188|ref|YP_003900505.1| - 0.00062 19.2 0.0 0.0013 18.1 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|307594188|ref|YP_003900505.1| - 0.00072 19.5 0.0 0.002 18.1 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|307594188|ref|YP_003900505.1| - 0.0015 18.0 0.0 0.0038 16.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|307594188|ref|YP_003900505.1| - 0.0019 18.3 0.0 0.0065 16.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|307594188|ref|YP_003900505.1| - 0.002 17.6 0.0 0.0078 15.7 0.0 2.1 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|307594188|ref|YP_003900505.1| - 0.0028 17.3 0.1 0.0078 15.9 0.0 1.7 1 0 0 1 1 1 1 NTPase KAP_NTPase PF07693.9 gi|307594188|ref|YP_003900505.1| - 0.0033 16.4 0.0 0.0054 15.7 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain AAA_25 PF13481.1 gi|307594188|ref|YP_003900505.1| - 0.0035 16.7 0.0 0.0094 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|307594188|ref|YP_003900505.1| - 0.0049 16.5 0.0 0.026 14.2 0.0 2.2 3 0 0 3 3 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|307594188|ref|YP_003900505.1| - 0.0079 16.0 0.0 0.02 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|307594188|ref|YP_003900505.1| - 0.015 15.2 0.0 0.037 13.9 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|307594188|ref|YP_003900505.1| - 0.018 15.1 0.0 0.052 13.7 0.0 1.8 2 0 0 2 2 1 0 RNA helicase FtsK_SpoIIIE PF01580.13 gi|307594188|ref|YP_003900505.1| - 0.018 14.4 0.0 0.059 12.8 0.0 1.8 1 0 0 1 1 1 0 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|307594188|ref|YP_003900505.1| - 0.022 13.4 0.0 0.067 11.7 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF258 PF03193.11 gi|307594188|ref|YP_003900505.1| - 0.023 13.9 0.0 0.3 10.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|307594188|ref|YP_003900505.1| - 0.024 14.3 0.0 0.081 12.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|307594188|ref|YP_003900505.1| - 0.025 14.0 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|307594188|ref|YP_003900505.1| - 0.038 13.8 0.0 0.083 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|307594188|ref|YP_003900505.1| - 0.044 13.2 0.0 1.5 8.2 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain SmpB PF01668.13 gi|307594188|ref|YP_003900505.1| - 0.047 13.4 0.4 3 7.7 0.0 2.9 3 0 0 3 3 2 0 SmpB protein AAA_11 PF13086.1 gi|307594188|ref|YP_003900505.1| - 0.049 13.1 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|307594188|ref|YP_003900505.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain UCR_14kD PF02271.11 gi|307594188|ref|YP_003900505.1| - 0.07 12.8 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase complex 14kD subunit Zeta_toxin PF06414.7 gi|307594188|ref|YP_003900505.1| - 0.075 12.1 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.16 gi|307594188|ref|YP_003900505.1| - 0.076 12.1 0.0 0.16 11.0 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|307594188|ref|YP_003900505.1| - 0.086 13.0 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|307594188|ref|YP_003900505.1| - 0.088 12.4 0.0 0.28 10.8 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|307594188|ref|YP_003900505.1| - 0.093 13.0 0.1 0.38 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|307594188|ref|YP_003900505.1| - 0.096 11.1 0.0 0.18 10.2 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein AAA_30 PF13604.1 gi|307594188|ref|YP_003900505.1| - 0.12 11.9 0.0 0.41 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.13 gi|307594188|ref|YP_003900505.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PRK PF00485.13 gi|307594188|ref|YP_003900505.1| - 0.13 11.8 0.0 0.33 10.4 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Adeno_IVa2 PF02456.10 gi|307594188|ref|YP_003900505.1| - 0.19 10.3 0.0 0.32 9.5 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF2070 PF09843.4 gi|307594189|ref|YP_003900506.1| - 1.3e-26 93.1 0.0 1.8e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF2153 PF09921.4 gi|307594190|ref|YP_003900507.1| - 3.1e-37 126.9 1.3 3.7e-37 126.7 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) MTHFR PF02219.12 gi|307594190|ref|YP_003900507.1| - 0.092 11.8 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase Arg_repressor PF01316.16 gi|307594190|ref|YP_003900507.1| - 0.1 12.1 0.0 0.29 10.7 0.0 1.8 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain Penicillinase_R PF03965.11 gi|307594191|ref|YP_003900508.1| - 3.6e-11 43.1 0.1 3.8e-11 43.0 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.14 gi|307594191|ref|YP_003900508.1| - 0.014 15.0 0.2 0.029 14.0 0.1 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|307594191|ref|YP_003900508.1| - 0.023 14.4 0.1 0.042 13.6 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Sulfolobus_pRN PF05584.6 gi|307594191|ref|YP_003900508.1| - 0.073 13.0 0.2 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein FUR PF01475.14 gi|307594191|ref|YP_003900508.1| - 0.073 12.9 0.1 0.092 12.6 0.1 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Met_10 PF02475.11 gi|307594192|ref|YP_003900509.1| - 3.1e-52 177.1 0.0 3.7e-52 176.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.11 gi|307594192|ref|YP_003900509.1| - 0.0041 16.0 0.0 0.0055 15.6 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|307594192|ref|YP_003900509.1| - 0.0091 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|307594192|ref|YP_003900509.1| - 0.0096 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain ATP-synt_ab PF00006.20 gi|307594193|ref|YP_003900510.1| - 5.8e-61 205.7 0.0 7.6e-61 205.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|307594193|ref|YP_003900510.1| - 1.8e-09 38.0 0.0 3.1e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|307594193|ref|YP_003900510.1| - 2.6e-07 30.7 2.3 4.6e-07 29.9 1.6 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RHH_1 PF01402.16 gi|307594194|ref|YP_003900511.1| - 8.8e-10 38.0 0.0 1.6e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|307594194|ref|YP_003900511.1| - 0.078 13.1 0.0 0.093 12.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) Flavoprotein PF02441.14 gi|307594195|ref|YP_003900512.1| - 1.3e-32 112.1 0.0 1.9e-32 111.6 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Dak2 PF02734.12 gi|307594195|ref|YP_003900512.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 DAK2 domain ATP_bind_3 PF01171.15 gi|307594196|ref|YP_003900513.1| - 1.9e-10 40.5 0.0 4.4e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|307594196|ref|YP_003900513.1| - 0.0014 18.4 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|307594196|ref|YP_003900513.1| - 0.0021 17.4 0.4 0.0021 17.4 0.3 2.0 2 0 0 2 2 2 1 RecR protein Asn_synthase PF00733.16 gi|307594196|ref|YP_003900513.1| - 0.0067 15.9 0.0 0.0099 15.3 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|307594196|ref|YP_003900513.1| - 0.042 12.4 0.0 0.068 11.7 0.0 1.4 1 1 0 1 1 1 0 tRNA methyl transferase DZR PF12773.2 gi|307594196|ref|YP_003900513.1| - 0.38 10.6 5.6 7.2 6.5 0.5 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-B_box PF00643.19 gi|307594196|ref|YP_003900513.1| - 1.4 8.8 3.8 1.2 9.0 0.1 2.2 2 0 0 2 2 2 0 B-box zinc finger ACT PF01842.20 gi|307594197|ref|YP_003900514.1| - 5.3e-12 44.9 0.3 1.2e-11 43.8 0.1 1.6 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|307594197|ref|YP_003900514.1| - 5.1e-06 26.1 0.0 9.2e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|307594197|ref|YP_003900514.1| - 0.00014 22.1 0.1 0.00031 21.0 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|307594197|ref|YP_003900514.1| - 0.00016 21.0 0.0 0.0003 20.2 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT_5 PF13710.1 gi|307594197|ref|YP_003900514.1| - 0.04 13.7 0.1 0.26 11.1 0.0 2.1 2 0 0 2 2 2 0 ACT domain DUF4393 PF14337.1 gi|307594197|ref|YP_003900514.1| - 0.078 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) tRNA-synt_1 PF00133.17 gi|307594198|ref|YP_003900515.1| - 8.7e-120 400.5 0.0 8e-119 397.3 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|307594198|ref|YP_003900515.1| - 3e-30 105.1 0.0 8.4e-16 57.6 0.0 3.4 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|307594198|ref|YP_003900515.1| - 1.3e-28 99.6 0.1 2.4e-28 98.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|307594198|ref|YP_003900515.1| - 0.0041 16.4 0.0 0.12 11.6 0.0 2.2 1 1 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|307594198|ref|YP_003900515.1| - 0.01 14.5 0.0 0.68 8.5 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|307594198|ref|YP_003900515.1| - 0.14 10.8 0.0 0.27 10.0 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) MFS_1 PF07690.11 gi|307594199|ref|YP_003900516.1| - 1.1e-13 50.5 72.1 1.4e-08 33.8 23.0 2.1 1 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307594199|ref|YP_003900516.1| - 0.0005 18.7 46.5 0.021 13.4 13.4 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter Transgly_assoc PF04226.8 gi|307594199|ref|YP_003900516.1| - 0.0016 18.4 3.9 0.0016 18.4 2.7 4.3 5 0 0 5 5 5 1 Transglycosylase associated protein EF1_GNE PF00736.14 gi|307594200|ref|YP_003900517.1| - 5e-19 67.7 0.5 5.4e-19 67.6 0.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AAA PF00004.24 gi|307594201|ref|YP_003900518.1| - 2e-99 328.9 0.0 6.8e-49 165.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|307594201|ref|YP_003900518.1| - 3.3e-30 103.8 1.2 7.5e-29 99.5 0.6 2.8 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|307594201|ref|YP_003900518.1| - 5.6e-15 55.0 0.0 3.9e-07 29.3 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|307594201|ref|YP_003900518.1| - 1e-13 51.5 0.4 3.9e-05 23.7 0.1 4.3 2 2 0 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|307594201|ref|YP_003900518.1| - 2.3e-13 50.0 0.5 2.1e-05 24.3 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|307594201|ref|YP_003900518.1| - 7.4e-13 48.7 0.0 2.9e-06 27.2 0.0 3.3 3 1 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|307594201|ref|YP_003900518.1| - 1.7e-12 47.6 0.0 1.5e-05 25.0 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain AAA_17 PF13207.1 gi|307594201|ref|YP_003900518.1| - 1.8e-12 48.1 1.0 1.3e-05 26.0 0.0 3.8 3 2 0 3 3 2 2 AAA domain AAA_14 PF13173.1 gi|307594201|ref|YP_003900518.1| - 6.5e-12 45.4 0.0 9.4e-06 25.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|307594201|ref|YP_003900518.1| - 1.6e-11 44.2 0.0 6e-05 22.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|307594201|ref|YP_003900518.1| - 3.2e-10 39.5 0.6 8.6e-10 38.1 0.4 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 IstB_IS21 PF01695.12 gi|307594201|ref|YP_003900518.1| - 2.2e-09 36.9 0.4 0.0025 17.2 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein TIP49 PF06068.8 gi|307594201|ref|YP_003900518.1| - 6.5e-09 34.9 4.6 0.00066 18.5 0.0 3.1 3 0 0 3 3 3 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|307594201|ref|YP_003900518.1| - 1.2e-08 34.3 0.2 0.0028 16.7 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin AAA_18 PF13238.1 gi|307594201|ref|YP_003900518.1| - 2.6e-08 34.2 0.0 0.0096 16.2 0.0 3.3 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.1 gi|307594201|ref|YP_003900518.1| - 2.7e-08 33.9 0.0 0.0037 17.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|307594201|ref|YP_003900518.1| - 5.5e-08 32.4 3.5 0.0027 17.4 0.3 3.0 2 0 0 2 2 2 2 Part of AAA domain UFD1 PF03152.9 gi|307594201|ref|YP_003900518.1| - 3.8e-07 29.4 1.0 7.1e-07 28.5 0.7 1.4 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 Mg_chelatase PF01078.16 gi|307594201|ref|YP_003900518.1| - 3.9e-07 29.4 1.0 0.022 13.9 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|307594201|ref|YP_003900518.1| - 1e-06 28.3 0.1 0.11 12.0 0.0 3.5 2 2 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|307594201|ref|YP_003900518.1| - 1.9e-06 27.2 0.7 0.056 12.6 0.1 2.9 2 0 0 2 2 2 2 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|307594201|ref|YP_003900518.1| - 6.2e-06 26.3 0.0 0.074 13.0 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|307594201|ref|YP_003900518.1| - 1e-05 25.6 0.0 0.19 11.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.22 gi|307594201|ref|YP_003900518.1| - 1.1e-05 25.7 0.0 0.18 12.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.1 gi|307594201|ref|YP_003900518.1| - 1.4e-05 24.5 9.2 0.15 11.4 0.1 4.3 2 2 2 4 4 4 2 AAA domain DUF815 PF05673.8 gi|307594201|ref|YP_003900518.1| - 1.4e-05 24.1 0.0 0.1 11.5 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|307594201|ref|YP_003900518.1| - 2.3e-05 24.2 0.5 0.19 11.4 0.2 4.1 2 2 2 4 4 4 1 Archaeal ATPase AAA_24 PF13479.1 gi|307594201|ref|YP_003900518.1| - 2.8e-05 23.8 3.1 0.3 10.6 0.0 3.9 4 0 0 4 4 4 2 AAA domain NACHT PF05729.7 gi|307594201|ref|YP_003900518.1| - 0.0001 22.0 0.7 0.76 9.4 0.1 3.6 4 0 0 4 4 4 1 NACHT domain MCM PF00493.18 gi|307594201|ref|YP_003900518.1| - 0.00017 20.5 0.0 0.69 8.6 0.0 3.5 3 0 0 3 3 3 1 MCM2/3/5 family AAA_3 PF07726.6 gi|307594201|ref|YP_003900518.1| - 0.00018 21.1 0.0 0.74 9.4 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|307594201|ref|YP_003900518.1| - 0.00024 20.6 0.0 0.48 9.8 0.0 2.7 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain KaiC PF06745.8 gi|307594201|ref|YP_003900518.1| - 0.00041 19.5 7.6 0.21 10.6 0.0 4.0 3 2 0 4 4 3 2 KaiC ResIII PF04851.10 gi|307594201|ref|YP_003900518.1| - 0.00046 20.0 0.0 0.63 9.8 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|307594201|ref|YP_003900518.1| - 0.00064 19.4 0.0 0.53 9.8 0.0 3.2 4 0 0 4 4 2 1 Bacterial dnaA protein Parvo_NS1 PF01057.12 gi|307594201|ref|YP_003900518.1| - 0.00064 18.6 0.3 0.94 8.2 0.0 2.5 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 T2SE PF00437.15 gi|307594201|ref|YP_003900518.1| - 0.00093 18.1 0.0 1.3 7.8 0.1 2.8 2 1 0 2 2 2 2 Type II/IV secretion system protein AAA_11 PF13086.1 gi|307594201|ref|YP_003900518.1| - 0.0015 18.1 0.0 2.4 7.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|307594201|ref|YP_003900518.1| - 0.0016 17.5 0.0 1.1 8.1 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Guanylate_kin PF00625.16 gi|307594201|ref|YP_003900518.1| - 0.0016 17.8 1.7 20 4.5 0.0 4.6 3 2 2 5 5 4 0 Guanylate kinase Vps4_C PF09336.5 gi|307594201|ref|YP_003900518.1| - 0.0019 18.0 0.0 0.38 10.6 0.0 3.0 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain SKI PF01202.17 gi|307594201|ref|YP_003900518.1| - 0.0025 17.7 0.0 3 7.7 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase AAA_30 PF13604.1 gi|307594201|ref|YP_003900518.1| - 0.0034 16.9 0.4 2.4 7.6 0.0 3.0 3 0 0 3 3 2 1 AAA domain UPF0079 PF02367.12 gi|307594201|ref|YP_003900518.1| - 0.0062 16.1 0.0 5.7 6.6 0.0 2.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|307594201|ref|YP_003900518.1| - 0.0084 14.9 0.1 4.1 6.1 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain PduV-EutP PF10662.4 gi|307594201|ref|YP_003900518.1| - 0.014 14.8 0.0 2.6 7.5 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.1 gi|307594201|ref|YP_003900518.1| - 0.02 14.4 0.0 6.1 6.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Miro PF08477.8 gi|307594201|ref|YP_003900518.1| - 0.026 15.0 0.0 6.3 7.3 0.0 3.0 2 0 0 2 2 2 0 Miro-like protein SRPRB PF09439.5 gi|307594201|ref|YP_003900518.1| - 0.027 13.6 0.0 3.1 6.9 0.0 2.7 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Viral_helicase1 PF01443.13 gi|307594201|ref|YP_003900518.1| - 0.034 13.6 0.0 0.38 10.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase cobW PF02492.14 gi|307594201|ref|YP_003900518.1| - 0.05 13.0 0.3 14 5.1 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain B5 PF03484.10 gi|307594201|ref|YP_003900518.1| - 0.076 12.8 0.5 7.1 6.5 0.1 2.9 2 0 0 2 2 2 0 tRNA synthetase B5 domain NTPase_1 PF03266.10 gi|307594201|ref|YP_003900518.1| - 0.089 12.5 8.5 5.5 6.6 0.0 4.5 4 1 0 5 5 4 0 NTPase IPT PF01745.11 gi|307594201|ref|YP_003900518.1| - 0.12 11.5 0.3 12 4.9 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase AAA_10 PF12846.2 gi|307594201|ref|YP_003900518.1| - 0.18 11.2 4.8 14 4.9 0.6 3.9 3 1 0 3 3 3 0 AAA-like domain CARD PF00619.16 gi|307594202|ref|YP_003900519.1| - 0.1 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Caspase recruitment domain XPG_I PF00867.13 gi|307594203|ref|YP_003900520.1| - 2.8e-23 81.8 0.0 4.5e-23 81.1 0.0 1.3 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|307594203|ref|YP_003900520.1| - 3.1e-20 72.2 0.0 6.4e-20 71.2 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|307594203|ref|YP_003900520.1| - 3.3e-06 27.2 0.0 9.6e-06 25.7 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.1 gi|307594203|ref|YP_003900520.1| - 0.021 14.9 0.1 0.09 12.9 0.0 2.2 2 1 0 2 2 2 0 Helix-hairpin-helix domain NADHdh PF00146.16 gi|307594204|ref|YP_003900521.1| - 2e-56 191.3 19.9 3.8e-56 190.4 13.7 1.6 1 1 0 1 1 1 1 NADH dehydrogenase LRR19-TM PF15176.1 gi|307594204|ref|YP_003900521.1| - 0.083 12.5 0.1 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 Leucine-rich repeat family 19 TM domain zf-C2H2 PF00096.21 gi|307594205|ref|YP_003900522.1| - 0.00018 21.6 0.0 0.00039 20.6 0.0 1.5 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2HC_2 PF13913.1 gi|307594205|ref|YP_003900522.1| - 0.00065 19.3 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 zinc-finger of a C2HC-type zf-C2H2_4 PF13894.1 gi|307594205|ref|YP_003900522.1| - 0.001 19.2 0.0 0.0019 18.3 0.0 1.4 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_jaz PF12171.3 gi|307594205|ref|YP_003900522.1| - 0.012 15.6 0.0 0.028 14.5 0.0 1.6 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-Di19 PF05605.7 gi|307594205|ref|YP_003900522.1| - 0.021 14.9 0.0 0.031 14.4 0.0 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding RGS PF00615.14 gi|307594205|ref|YP_003900522.1| - 0.16 12.0 0.7 0.46 10.5 0.4 1.6 1 1 0 1 1 1 0 Regulator of G protein signaling domain Phage-A118_gp45 PF10653.4 gi|307594207|ref|YP_003900524.1| - 0.053 13.3 0.4 0.13 12.1 0.3 1.7 1 0 0 1 1 1 0 Protein gp45 of Bacteriophage A118 MMR_HSR1_C PF08438.5 gi|307594207|ref|YP_003900524.1| - 0.07 13.3 0.3 0.11 12.6 0.2 1.6 1 1 0 1 1 1 0 GTPase of unknown function C-terminal MAAL_C PF07476.6 gi|307594207|ref|YP_003900524.1| - 0.087 11.7 0.2 0.1 11.4 0.1 1.2 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus LMP PF04778.7 gi|307594207|ref|YP_003900524.1| - 0.11 12.2 3.4 0.14 11.9 2.4 1.3 1 0 0 1 1 1 0 LMP repeated region Lip_prot_lig_C PF10437.4 gi|307594207|ref|YP_003900524.1| - 0.13 11.9 0.9 0.76 9.4 0.2 2.2 1 1 1 2 2 2 0 Bacterial lipoate protein ligase C-terminus CLU_N PF15044.1 gi|307594207|ref|YP_003900524.1| - 0.14 12.3 1.5 0.28 11.3 1.0 1.5 1 0 0 1 1 1 0 Mitochondrial function, CLU-N-term DUF4619 PF15398.1 gi|307594207|ref|YP_003900524.1| - 0.93 8.8 7.6 1 8.7 5.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4619) YgaB PF14182.1 gi|307594207|ref|YP_003900524.1| - 1.4 9.1 11.5 73 3.6 5.6 2.5 1 1 1 2 2 2 0 YgaB-like protein Saccharop_dh PF03435.13 gi|307594209|ref|YP_003900526.1| - 1.2e-40 139.7 0.0 1.4e-40 139.4 0.0 1.0 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|307594209|ref|YP_003900526.1| - 4.4e-07 29.8 0.0 7e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|307594209|ref|YP_003900526.1| - 4.3e-06 26.6 0.1 8.4e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.12 gi|307594209|ref|YP_003900526.1| - 4.7e-06 26.9 0.1 1e-05 25.8 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|307594209|ref|YP_003900526.1| - 9.9e-06 25.3 0.0 2e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|307594209|ref|YP_003900526.1| - 1.1e-05 25.6 0.0 1.9e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|307594209|ref|YP_003900526.1| - 2.4e-05 24.0 0.1 4.3e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|307594209|ref|YP_003900526.1| - 0.0013 17.9 0.1 0.0025 16.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|307594209|ref|YP_003900526.1| - 0.002 18.6 0.1 0.0031 17.9 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Shikimate_DH PF01488.15 gi|307594209|ref|YP_003900526.1| - 0.0021 18.1 0.1 0.0055 16.8 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase CoA_binding PF02629.14 gi|307594209|ref|YP_003900526.1| - 0.0036 17.7 0.1 0.0076 16.7 0.1 1.6 1 0 0 1 1 1 1 CoA binding domain DapB_N PF01113.15 gi|307594209|ref|YP_003900526.1| - 0.0038 17.1 0.1 0.0076 16.1 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.11 gi|307594209|ref|YP_003900526.1| - 0.0065 15.9 0.1 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ADH_zinc_N PF00107.21 gi|307594209|ref|YP_003900526.1| - 0.0084 15.6 0.1 0.017 14.6 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase PDH PF02153.12 gi|307594209|ref|YP_003900526.1| - 0.027 13.3 0.1 0.099 11.5 0.1 1.9 2 0 0 2 2 2 0 Prephenate dehydrogenase Methyltransf_11 PF08241.7 gi|307594209|ref|YP_003900526.1| - 0.046 14.1 0.1 0.21 12.0 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307594209|ref|YP_003900526.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain AA_permease_2 PF13520.1 gi|307594210|ref|YP_003900527.1| - 5.7e-37 127.2 53.6 5.7e-37 127.2 37.1 2.8 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|307594210|ref|YP_003900527.1| - 7.4e-21 74.0 43.0 7.4e-21 74.0 29.8 2.9 1 1 2 3 3 3 1 Amino acid permease AA_permease_2 PF13520.1 gi|307594211|ref|YP_003900528.1| - 6.3e-39 133.7 79.2 6.3e-39 133.7 54.9 2.4 1 1 0 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|307594211|ref|YP_003900528.1| - 3.1e-21 75.2 67.7 3.1e-21 75.2 46.9 2.5 1 1 1 2 2 2 1 Amino acid permease Pyr_redox_dim PF02852.17 gi|307594212|ref|YP_003900529.1| - 2.5e-27 95.1 0.1 5.7e-27 93.9 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|307594212|ref|YP_003900529.1| - 2.7e-25 89.4 12.4 3.6e-16 59.6 0.1 4.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|307594212|ref|YP_003900529.1| - 3.8e-20 72.0 8.9 4.2e-19 68.7 1.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|307594212|ref|YP_003900529.1| - 1.1e-11 44.3 9.2 2e-08 33.5 0.1 3.3 2 1 1 3 3 3 3 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|307594212|ref|YP_003900529.1| - 1.4e-10 41.5 0.1 2.3e-09 37.6 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|307594212|ref|YP_003900529.1| - 2.4e-06 26.7 6.2 0.00049 19.2 0.1 2.7 2 1 1 3 3 3 2 Thi4 family HI0933_like PF03486.9 gi|307594212|ref|YP_003900529.1| - 2.8e-06 26.0 8.4 0.0017 16.8 0.4 3.6 4 0 0 4 4 4 2 HI0933-like protein DAO PF01266.19 gi|307594212|ref|YP_003900529.1| - 3.9e-06 26.0 18.3 0.068 12.0 1.0 3.9 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|307594212|ref|YP_003900529.1| - 1.4e-05 24.1 0.9 1.4e-05 24.1 0.6 3.0 4 0 0 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|307594212|ref|YP_003900529.1| - 3.2e-05 23.1 8.1 9e-05 21.7 0.2 3.4 4 0 0 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|307594212|ref|YP_003900529.1| - 5.3e-05 22.4 8.4 0.022 13.8 1.3 2.2 2 0 0 2 2 2 2 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|307594212|ref|YP_003900529.1| - 0.00099 18.5 1.2 0.00099 18.5 0.8 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|307594212|ref|YP_003900529.1| - 0.0046 15.9 5.3 0.21 10.4 0.1 2.8 2 1 1 3 3 3 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|307594212|ref|YP_003900529.1| - 0.0075 15.8 0.4 0.029 13.9 0.0 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|307594212|ref|YP_003900529.1| - 0.027 14.7 0.5 7.2 6.9 0.0 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|307594212|ref|YP_003900529.1| - 0.14 12.2 8.3 0.26 11.3 2.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|307594212|ref|YP_003900529.1| - 1.1 8.8 9.6 0.08 12.5 0.3 2.5 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JmjN PF02375.12 gi|307594212|ref|YP_003900529.1| - 2.1 7.9 5.9 2.1 7.9 2.6 2.1 2 0 0 2 2 2 0 jmjN domain DUF2175 PF09943.4 gi|307594213|ref|YP_003900530.1| - 1.5e-27 95.6 0.0 1.7e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) Ead_Ea22 PF13935.1 gi|307594213|ref|YP_003900530.1| - 0.063 13.5 0.0 0.097 13.0 0.0 1.3 1 1 0 1 1 1 0 Ead/Ea22-like protein AAA_5 PF07728.9 gi|307594214|ref|YP_003900531.1| - 2.4e-26 92.1 0.1 8.7e-26 90.3 0.0 2.0 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|307594214|ref|YP_003900531.1| - 1.3e-06 28.6 0.1 2.2e-05 24.6 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|307594214|ref|YP_003900531.1| - 1.1e-05 24.9 0.0 2.5e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|307594214|ref|YP_003900531.1| - 0.00068 19.2 0.0 0.0034 16.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307594214|ref|YP_003900531.1| - 0.0017 18.4 0.1 0.008 16.1 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|307594214|ref|YP_003900531.1| - 0.0025 17.2 0.0 0.0043 16.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|307594214|ref|YP_003900531.1| - 0.0031 18.3 0.9 0.017 15.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain DUF4363 PF14276.1 gi|307594214|ref|YP_003900531.1| - 0.0067 16.1 5.3 0.0073 16.0 0.5 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4363) NTPase_1 PF03266.10 gi|307594214|ref|YP_003900531.1| - 0.023 14.4 0.0 1 9.0 0.0 2.6 2 0 0 2 2 2 0 NTPase T2SE PF00437.15 gi|307594214|ref|YP_003900531.1| - 0.029 13.2 0.0 0.069 12.0 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|307594214|ref|YP_003900531.1| - 0.029 13.5 0.0 0.067 12.3 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SusD-like_2 PF12771.2 gi|307594214|ref|YP_003900531.1| - 0.03 12.7 0.0 0.052 11.9 0.0 1.4 1 0 0 1 1 1 0 Starch-binding associating with outer membrane Zw10 PF06248.8 gi|307594214|ref|YP_003900531.1| - 0.032 12.3 0.5 0.041 12.0 0.3 1.2 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 AAA_22 PF13401.1 gi|307594214|ref|YP_003900531.1| - 0.036 14.1 3.3 0.55 10.3 0.1 3.0 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|307594214|ref|YP_003900531.1| - 0.04 13.6 0.0 0.087 12.5 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|307594214|ref|YP_003900531.1| - 0.064 13.2 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Ribonuc_L-PSP PF01042.16 gi|307594214|ref|YP_003900531.1| - 0.077 12.7 0.0 1.2 8.9 0.0 2.6 3 0 0 3 3 3 0 Endoribonuclease L-PSP AAA_29 PF13555.1 gi|307594214|ref|YP_003900531.1| - 0.081 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Erp_C PF06780.6 gi|307594214|ref|YP_003900531.1| - 0.33 10.7 5.9 1.2 8.9 1.7 2.8 2 1 1 3 3 3 0 Erp protein C-terminus Glyco_tranf_2_3 PF13641.1 gi|307594216|ref|YP_003900533.1| - 6e-15 55.6 0.0 8.5e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|307594216|ref|YP_003900533.1| - 7.6e-15 54.9 0.0 1.1e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|307594216|ref|YP_003900533.1| - 2.3e-14 53.0 0.0 5.8e-14 51.7 0.0 1.6 1 1 1 2 2 2 1 Glycosyl transferase family 21 NAD_binding_2 PF03446.10 gi|307594217|ref|YP_003900534.1| - 8.8e-40 136.2 0.1 1.2e-39 135.7 0.1 1.1 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|307594217|ref|YP_003900534.1| - 5e-28 97.6 0.0 7.9e-28 96.9 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|307594217|ref|YP_003900534.1| - 5.4e-06 25.6 0.0 8.4e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|307594217|ref|YP_003900534.1| - 2.9e-05 24.1 0.0 7e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|307594217|ref|YP_003900534.1| - 3.2e-05 24.2 0.1 0.00012 22.4 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|307594217|ref|YP_003900534.1| - 0.00035 19.9 0.0 0.00063 19.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|307594217|ref|YP_003900534.1| - 0.00046 20.3 0.3 0.59 10.4 0.1 2.3 2 0 0 2 2 2 2 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|307594217|ref|YP_003900534.1| - 0.0021 18.5 0.0 0.0043 17.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold MFS_1 PF07690.11 gi|307594218|ref|YP_003900535.1| - 8.9e-48 162.7 96.3 6.4e-39 133.6 41.4 3.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307594218|ref|YP_003900535.1| - 1.5e-08 33.6 29.0 5.1e-05 22.0 7.9 2.5 2 0 0 2 2 2 2 Sugar (and other) transporter PUCC PF03209.10 gi|307594218|ref|YP_003900535.1| - 2e-08 33.3 4.2 2e-08 33.3 2.9 3.2 3 2 0 3 3 3 1 PUCC protein MFS_3 PF05977.8 gi|307594218|ref|YP_003900535.1| - 0.0015 16.7 17.7 0.006 14.7 1.4 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|307594218|ref|YP_003900535.1| - 0.43 8.9 39.8 0.11 10.8 15.4 2.9 1 1 0 2 2 2 0 MFS/sugar transport protein Raffinose_syn PF05691.7 gi|307594219|ref|YP_003900536.1| - 4.8e-41 140.1 0.1 4.9e-23 80.5 0.0 3.6 2 2 2 4 4 4 3 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.13 gi|307594219|ref|YP_003900536.1| - 8e-07 28.0 0.2 1.3e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 Melibiase Glyco_hydro_31 PF01055.21 gi|307594219|ref|YP_003900536.1| - 3.2e-05 22.9 0.0 0.00024 20.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 31 Hint_2 PF13403.1 gi|307594221|ref|YP_003900538.1| - 0.067 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Hint domain MS_channel PF00924.13 gi|307594222|ref|YP_003900539.1| - 6.1e-16 58.3 2.6 9.9e-16 57.6 1.5 1.7 1 1 0 1 1 1 1 Mechanosensitive ion channel Podoplanin PF05808.6 gi|307594222|ref|YP_003900539.1| - 0.31 10.5 3.0 0.81 9.2 2.1 1.8 1 0 0 1 1 1 0 Podoplanin AFOR_C PF01314.13 gi|307594223|ref|YP_003900540.1| - 1.4e-122 409.1 0.0 1.7e-122 408.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|307594223|ref|YP_003900540.1| - 3.7e-72 241.8 0.0 5.3e-72 241.3 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DSPc PF00782.15 gi|307594224|ref|YP_003900541.1| - 1e-19 70.4 0.0 1.2e-19 70.2 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain PTPlike_phytase PF14566.1 gi|307594224|ref|YP_003900541.1| - 1.3e-07 31.7 0.0 2e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase PF00102.22 gi|307594224|ref|YP_003900541.1| - 9.7e-06 25.0 0.0 1.8e-05 24.2 0.0 1.3 1 1 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.7 gi|307594224|ref|YP_003900541.1| - 0.00013 21.5 0.0 0.00015 21.2 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) DUF442 PF04273.8 gi|307594224|ref|YP_003900541.1| - 0.022 14.5 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative phosphatase (DUF442) Sugar_tr PF00083.19 gi|307594225|ref|YP_003900542.1| - 2.7e-15 55.8 37.0 1.3e-14 53.6 9.7 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|307594225|ref|YP_003900542.1| - 4.4e-12 45.3 52.9 4.4e-12 45.3 36.6 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily RIO1 PF01163.17 gi|307594226|ref|YP_003900543.1| - 9.8e-47 158.7 0.0 1.4e-46 158.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|307594226|ref|YP_003900543.1| - 6.9e-23 80.5 0.1 1.3e-22 79.6 0.1 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|307594226|ref|YP_003900543.1| - 1.8e-09 37.6 1.3 0.00097 18.9 0.2 3.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|307594226|ref|YP_003900543.1| - 0.00062 18.8 0.0 0.94 8.5 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|307594226|ref|YP_003900543.1| - 0.0037 16.4 0.0 0.0056 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain HrcA_DNA-bdg PF03444.10 gi|307594226|ref|YP_003900543.1| - 0.015 14.7 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|307594226|ref|YP_003900543.1| - 0.078 13.0 0.1 0.24 11.5 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_27 PF13463.1 gi|307594226|ref|YP_003900543.1| - 0.13 12.6 0.0 3.3 8.0 0.0 2.8 3 0 0 3 3 3 0 Winged helix DNA-binding domain MafB19-deam PF14437.1 gi|307594226|ref|YP_003900543.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 MafB19-like deaminase DUF460 PF04312.8 gi|307594227|ref|YP_003900544.1| - 1.7e-43 147.4 1.5 7.1e-43 145.4 0.8 2.4 3 0 0 3 3 2 1 Protein of unknown function (DUF460) DUF1664 PF07889.7 gi|307594227|ref|YP_003900544.1| - 0.0045 16.7 1.1 0.41 10.4 0.2 3.2 3 1 1 4 4 4 1 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|307594227|ref|YP_003900544.1| - 0.0099 14.3 7.0 0.014 13.8 4.8 1.1 1 0 0 1 1 1 1 AAA domain TMF_DNA_bd PF12329.3 gi|307594227|ref|YP_003900544.1| - 0.011 15.5 5.9 0.55 10.0 1.1 3.3 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Prefoldin_2 PF01920.15 gi|307594227|ref|YP_003900544.1| - 0.015 15.0 6.6 1.9 8.2 2.0 3.1 2 1 0 2 2 2 0 Prefoldin subunit Tropomyosin_1 PF12718.2 gi|307594227|ref|YP_003900544.1| - 0.025 14.4 9.9 0.14 12.0 5.8 2.2 1 1 1 2 2 2 0 Tropomyosin like ADIP PF11559.3 gi|307594227|ref|YP_003900544.1| - 0.028 14.3 2.9 0.092 12.6 2.0 1.8 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding FtsQ PF03799.10 gi|307594227|ref|YP_003900544.1| - 0.041 14.0 0.1 19 5.4 0.0 3.0 3 0 0 3 3 3 0 Cell division protein FtsQ SPX PF03105.14 gi|307594227|ref|YP_003900544.1| - 0.24 11.1 1.1 0.4 10.4 0.8 1.3 1 0 0 1 1 1 0 SPX domain Fzo_mitofusin PF04799.8 gi|307594227|ref|YP_003900544.1| - 0.26 10.6 4.7 0.27 10.5 1.3 2.2 1 1 1 2 2 2 0 fzo-like conserved region DUF4404 PF14357.1 gi|307594227|ref|YP_003900544.1| - 0.47 10.9 5.3 4.1 7.8 0.4 3.1 3 1 0 3 3 2 0 Domain of unknown function (DUF4404) Spectrin PF00435.16 gi|307594227|ref|YP_003900544.1| - 0.75 10.1 4.9 3.1 8.1 1.8 2.4 2 0 0 2 2 2 0 Spectrin repeat Prefoldin_3 PF13758.1 gi|307594227|ref|YP_003900544.1| - 1.4 8.7 11.4 0.59 9.9 4.2 2.9 2 1 1 3 3 2 0 Prefoldin subunit COG5 PF10392.4 gi|307594227|ref|YP_003900544.1| - 1.4 8.9 6.6 0.85 9.5 0.9 3.0 2 1 2 4 4 4 0 Golgi transport complex subunit 5 Nbl1_Borealin_N PF10444.4 gi|307594227|ref|YP_003900544.1| - 1.7 8.1 9.7 8.9 5.7 0.2 4.3 4 0 0 4 4 4 0 Nbl1 / Borealin N terminal TMF_TATA_bd PF12325.3 gi|307594227|ref|YP_003900544.1| - 3.1 7.5 11.7 27 4.5 0.1 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF4200 PF13863.1 gi|307594227|ref|YP_003900544.1| - 6.5 6.7 15.2 4.5 7.2 6.6 3.0 3 1 1 4 4 4 0 Domain of unknown function (DUF4200) AdoMet_Synthase PF01941.14 gi|307594228|ref|YP_003900545.1| - 1.7e-172 573.4 4.1 1.9e-172 573.2 2.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.17 gi|307594229|ref|YP_003900546.1| - 2e-17 62.4 3.4 2.3e-17 62.3 2.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|307594229|ref|YP_003900546.1| - 1.9e-05 24.5 0.0 2.4e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Ataxin 2 SM domain DUF2642 PF10842.3 gi|307594229|ref|YP_003900546.1| - 0.031 13.7 0.3 0.26 10.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2642) Herpes_MCP PF03122.9 gi|307594229|ref|YP_003900546.1| - 0.13 9.5 0.0 0.13 9.5 0.0 1.0 1 0 0 1 1 1 0 Herpes virus major capsid protein RNA_pol_N PF01194.12 gi|307594230|ref|YP_003900547.1| - 3.9e-28 97.2 0.2 4.4e-28 97.0 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|307594230|ref|YP_003900547.1| - 0.002 18.2 0.0 0.003 17.6 0.0 1.3 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S14 PF00253.16 gi|307594230|ref|YP_003900547.1| - 0.2 11.0 0.9 5.9 6.3 0.2 2.1 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e Ribosomal_S9 PF00380.14 gi|307594231|ref|YP_003900548.1| - 7.1e-33 113.4 0.1 8.7e-33 113.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|307594232|ref|YP_003900549.1| - 1.1e-27 96.6 0.1 1.5e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|307594233|ref|YP_003900550.1| - 9.4e-12 45.4 0.1 1.1e-11 45.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|307594234|ref|YP_003900551.1| - 1.3e-27 96.1 0.0 2.9e-27 95.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|307594234|ref|YP_003900551.1| - 1.5e-11 43.2 0.0 2e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_10 PF13237.1 gi|307594234|ref|YP_003900551.1| - 0.046 13.5 3.4 0.12 12.1 2.4 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307594234|ref|YP_003900551.1| - 0.12 12.7 2.3 0.28 11.6 1.6 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF575 PF04746.7 gi|307594235|ref|YP_003900552.1| - 0.11 12.5 0.3 0.22 11.5 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF575) DUF2583 PF10762.4 gi|307594235|ref|YP_003900552.1| - 0.52 10.4 0.1 0.52 10.4 0.1 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) DUF3311 PF11755.3 gi|307594236|ref|YP_003900553.1| - 2e-14 52.8 12.0 2.2e-14 52.6 8.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF2975 PF11188.3 gi|307594236|ref|YP_003900553.1| - 0.29 10.8 4.2 0.35 10.5 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4212 PF13937.1 gi|307594236|ref|YP_003900553.1| - 0.72 9.8 4.2 0.88 9.6 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) ABC2_membrane_3 PF12698.2 gi|307594236|ref|YP_003900553.1| - 1 8.3 8.8 1.2 8.0 6.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2269 PF10027.4 gi|307594236|ref|YP_003900553.1| - 3 7.6 10.0 4.6 7.0 6.9 1.4 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF4064 PF13273.1 gi|307594236|ref|YP_003900553.1| - 7 6.8 7.8 7.4 6.7 2.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Metallophos_2 PF12850.2 gi|307594237|ref|YP_003900554.1| - 3.9e-21 75.5 0.0 4.6e-21 75.2 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|307594237|ref|YP_003900554.1| - 2e-16 59.9 0.0 3.7e-13 49.2 0.0 2.2 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|307594237|ref|YP_003900554.1| - 1.3e-08 34.4 4.3 7.6e-08 31.9 3.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Pik1 PF11522.3 gi|307594237|ref|YP_003900554.1| - 0.025 14.3 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 Yeast phosphatidylinositol-4-OH kinase Pik1 DUF768 PF05589.6 gi|307594239|ref|YP_003900556.1| - 0.088 12.7 0.0 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF768) adh_short_C2 PF13561.1 gi|307594240|ref|YP_003900557.1| - 3.8e-34 118.5 0.0 4.4e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|307594240|ref|YP_003900557.1| - 1.1e-22 80.6 0.2 1.6e-22 80.1 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|307594240|ref|YP_003900557.1| - 4.8e-11 42.6 0.4 9.8e-11 41.6 0.1 1.6 2 1 0 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|307594240|ref|YP_003900557.1| - 6e-05 23.1 0.0 0.00014 21.9 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|307594240|ref|YP_003900557.1| - 0.00025 20.7 0.2 0.00046 19.9 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|307594240|ref|YP_003900557.1| - 0.016 14.5 0.7 0.092 11.9 0.4 2.0 2 0 0 2 2 2 0 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|307594240|ref|YP_003900557.1| - 0.099 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PAC2 PF09754.4 gi|307594241|ref|YP_003900558.1| - 6.3e-46 156.9 0.2 7.6e-46 156.7 0.1 1.0 1 0 0 1 1 1 1 PAC2 family LAGLIDADG_3 PF14528.1 gi|307594242|ref|YP_003900559.1| - 3.4e-06 27.1 2.7 0.043 14.0 0.1 3.9 4 0 0 4 4 4 2 LAGLIDADG-like domain GrpB PF04229.9 gi|307594242|ref|YP_003900559.1| - 0.0047 16.6 0.0 0.71 9.5 0.0 2.4 2 0 0 2 2 2 2 GrpB protein LAGLIDADG_WhiA PF14527.1 gi|307594242|ref|YP_003900559.1| - 0.46 10.3 0.1 0.46 10.3 0.0 3.5 4 1 0 4 4 4 0 WhiA LAGLIDADG-like domain Hexapep PF00132.19 gi|307594243|ref|YP_003900560.1| - 1.9e-23 80.8 31.4 8.6e-11 40.8 1.3 5.1 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|307594243|ref|YP_003900560.1| - 2.9e-09 36.3 33.7 9.5e-05 21.8 1.6 4.8 4 2 2 6 6 6 4 Hexapeptide repeat of succinyl-transferase Glycos_transf_1 PF00534.15 gi|307594244|ref|YP_003900561.1| - 2.5e-20 72.6 0.0 5.5e-20 71.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594244|ref|YP_003900561.1| - 3e-12 46.8 0.0 6.3e-12 45.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|307594244|ref|YP_003900561.1| - 4.4e-06 26.8 0.0 8e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|307594244|ref|YP_003900561.1| - 8.8e-05 22.2 0.0 0.0013 18.4 0.0 2.5 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|307594244|ref|YP_003900561.1| - 0.028 14.5 0.0 5.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain PGM_PMM_I PF02878.11 gi|307594245|ref|YP_003900562.1| - 1.3e-34 118.6 0.0 2.8e-34 117.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|307594245|ref|YP_003900562.1| - 5.1e-21 74.8 0.2 1.6e-20 73.2 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|307594245|ref|YP_003900562.1| - 6.2e-21 74.6 0.0 1.5e-20 73.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|307594245|ref|YP_003900562.1| - 3.3e-10 39.8 0.0 7.4e-10 38.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Peptidase_M42 PF05343.9 gi|307594246|ref|YP_003900563.1| - 3.8e-101 337.7 0.0 4.4e-101 337.4 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|307594246|ref|YP_003900563.1| - 2.8e-11 43.3 0.0 4.2e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|307594246|ref|YP_003900563.1| - 7e-07 29.1 0.0 2.1e-06 27.6 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|307594246|ref|YP_003900563.1| - 0.0061 15.1 0.0 0.0084 14.6 0.0 1.3 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) SM-ATX PF14438.1 gi|307594246|ref|YP_003900563.1| - 0.039 13.8 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 Ataxin 2 SM domain Xan_ur_permease PF00860.15 gi|307594247|ref|YP_003900564.1| - 1.9e-27 95.7 48.1 1.9e-27 95.7 33.3 2.6 1 1 1 2 2 2 2 Permease family Peptidase_M1 PF01433.15 gi|307594248|ref|YP_003900565.1| - 6.2e-99 331.7 0.0 1.1e-98 330.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M1 ERAP1_C PF11838.3 gi|307594248|ref|YP_003900565.1| - 4.3e-21 75.4 0.0 1.5e-20 73.6 0.0 1.8 1 1 0 1 1 1 1 ERAP1-like C-terminal domain Peptidase_MA_2 PF13485.1 gi|307594248|ref|YP_003900565.1| - 7.2e-21 74.5 1.3 1.8e-20 73.2 0.6 1.8 2 0 0 2 2 2 1 Peptidase MA superfamily AAA_21 PF13304.1 gi|307594249|ref|YP_003900566.1| - 2.8e-23 83.3 0.7 6.1e-22 78.9 0.5 2.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|307594249|ref|YP_003900566.1| - 3.6e-12 46.0 2.0 6.3e-08 32.0 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain DUF2813 PF11398.3 gi|307594249|ref|YP_003900566.1| - 4e-05 22.8 0.1 0.056 12.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) ATP-synt_C PF00137.16 gi|307594251|ref|YP_003900568.1| - 6.7e-17 61.1 18.0 6.7e-17 61.1 12.4 1.9 2 0 0 2 2 2 1 ATP synthase subunit C UPF0233 PF06781.7 gi|307594251|ref|YP_003900568.1| - 0.11 12.1 0.3 0.11 12.1 0.2 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) CbiM PF01891.11 gi|307594251|ref|YP_003900568.1| - 1.2 8.7 13.8 1.3 8.5 9.6 1.0 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region FixQ PF05545.6 gi|307594251|ref|YP_003900568.1| - 1.5 8.5 5.5 1.2 8.8 0.1 2.5 2 1 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ AzlD PF05437.7 gi|307594251|ref|YP_003900568.1| - 2.7 7.9 13.0 0.12 12.2 5.0 1.7 2 0 0 2 2 2 0 Branched-chain amino acid transport protein (AzlD) Peptidase_M20 PF01546.23 gi|307594252|ref|YP_003900569.1| - 3.8e-41 140.6 0.1 3.9e-40 137.3 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|307594252|ref|YP_003900569.1| - 2.8e-07 29.5 0.1 0.0016 17.3 0.1 3.1 3 0 0 3 3 3 3 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.12 gi|307594252|ref|YP_003900569.1| - 0.00055 19.7 0.0 0.0032 17.2 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|307594252|ref|YP_003900569.1| - 0.19 10.2 0.0 0.57 8.6 0.0 1.7 2 0 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) KaiC PF06745.8 gi|307594253|ref|YP_003900570.1| - 1.4e-22 79.9 0.0 2e-22 79.4 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|307594253|ref|YP_003900570.1| - 1.2e-08 34.5 0.0 2e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307594253|ref|YP_003900570.1| - 1.4e-06 28.3 0.0 1.7e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain GvpD PF07088.6 gi|307594253|ref|YP_003900570.1| - 2.7e-06 25.9 0.7 4.5e-06 25.2 0.5 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_22 PF13401.1 gi|307594253|ref|YP_003900570.1| - 6e-05 23.1 0.0 0.00012 22.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|307594253|ref|YP_003900570.1| - 0.00011 21.8 0.7 0.048 13.3 0.1 2.4 1 1 1 2 2 2 2 NACHT domain AAA PF00004.24 gi|307594253|ref|YP_003900570.1| - 0.00062 19.9 0.1 0.002 18.2 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|307594253|ref|YP_003900570.1| - 0.00085 19.2 0.1 0.0015 18.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|307594253|ref|YP_003900570.1| - 0.0013 18.3 0.0 0.0035 16.9 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_35 PF14516.1 gi|307594253|ref|YP_003900570.1| - 0.0015 17.2 0.0 0.0021 16.7 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain CSTF2_hinge PF14327.1 gi|307594253|ref|YP_003900570.1| - 0.012 15.6 0.6 0.11 12.5 0.0 2.7 2 1 1 3 3 3 0 Hinge domain of cleavage stimulation factor subunit 2 ATP-synt_ab PF00006.20 gi|307594253|ref|YP_003900570.1| - 0.013 15.0 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Pox_VLTF3 PF04947.9 gi|307594253|ref|YP_003900570.1| - 0.017 14.6 0.4 0.029 13.8 0.2 1.6 1 1 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like AAA_5 PF07728.9 gi|307594253|ref|YP_003900570.1| - 0.049 13.3 0.0 0.14 11.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP-cone PF03477.11 gi|307594253|ref|YP_003900570.1| - 0.06 13.7 0.3 19 5.7 0.1 3.1 3 0 0 3 3 3 0 ATP cone domain PAXNEB PF05625.6 gi|307594253|ref|YP_003900570.1| - 0.066 12.0 0.1 1.9 7.2 0.0 2.1 2 0 0 2 2 2 0 PAXNEB protein AAA_3 PF07726.6 gi|307594253|ref|YP_003900570.1| - 0.091 12.3 0.0 0.38 10.3 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|307594253|ref|YP_003900570.1| - 0.16 12.7 0.3 1.2 9.9 0.2 2.5 1 1 0 1 1 1 0 AAA domain SpoVA PF03862.8 gi|307594254|ref|YP_003900571.1| - 0.028 14.5 0.7 0.028 14.5 0.5 2.6 1 1 0 2 2 2 0 SpoVA protein PIRT PF15099.1 gi|307594255|ref|YP_003900572.1| - 0.027 13.6 5.3 0.046 12.9 3.6 1.3 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family ATS3 PF06232.6 gi|307594255|ref|YP_003900572.1| - 0.042 13.4 0.5 0.1 12.1 0.2 1.7 2 0 0 2 2 2 0 Embryo-specific protein 3, (ATS3) DUF2892 PF11127.3 gi|307594255|ref|YP_003900572.1| - 0.72 9.7 4.0 1.7 8.5 2.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) PGPGW PF09656.5 gi|307594255|ref|YP_003900572.1| - 3.5 7.0 10.0 0.2 10.9 0.3 2.4 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) Yip1 PF04893.12 gi|307594256|ref|YP_003900573.1| - 0.013 15.0 7.2 0.015 14.7 5.0 1.1 1 0 0 1 1 1 0 Yip1 domain DUF1469 PF07332.6 gi|307594256|ref|YP_003900573.1| - 0.38 10.4 2.6 0.53 10.0 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DctQ PF04290.7 gi|307594256|ref|YP_003900573.1| - 0.77 9.5 9.8 2.9 7.6 1.8 2.1 1 1 1 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component Fig1 PF12351.3 gi|307594256|ref|YP_003900573.1| - 1.2 8.9 5.9 1.5 8.6 4.1 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 Sigma_reg_N PF13800.1 gi|307594256|ref|YP_003900573.1| - 8.7 6.4 11.1 3.8 7.6 0.7 2.3 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF2207 PF09972.4 gi|307594256|ref|YP_003900573.1| - 9 4.7 9.5 10 4.5 6.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TraB PF01963.12 gi|307594259|ref|YP_003900576.1| - 0.0031 17.0 0.2 0.039 13.3 0.0 2.0 2 0 0 2 2 2 1 TraB family 7TM_GPCR_Srh PF10318.4 gi|307594264|ref|YP_003900581.1| - 0.00026 19.8 6.5 0.00026 19.8 4.5 2.0 2 0 0 2 2 2 1 Serpentine type 7TM GPCR chemoreceptor Srh zf-DHHC PF01529.15 gi|307594264|ref|YP_003900581.1| - 0.0012 18.2 4.3 0.0012 18.2 3.0 2.2 1 1 1 2 2 2 1 DHHC palmitoyltransferase SDH_sah PF01972.11 gi|307594264|ref|YP_003900581.1| - 0.021 13.6 0.2 0.021 13.6 0.1 1.9 2 0 0 2 2 2 0 Serine dehydrogenase proteinase Form-deh_trans PF09163.6 gi|307594264|ref|YP_003900581.1| - 0.14 11.6 0.7 0.48 9.9 0.5 1.9 1 0 0 1 1 1 0 Formate dehydrogenase N, transmembrane Rifin_STEVOR PF02009.11 gi|307594264|ref|YP_003900581.1| - 1.2 8.7 15.9 0.068 12.8 0.9 2.1 1 1 1 2 2 2 0 Rifin/stevor family DUF843 PF05814.6 gi|307594264|ref|YP_003900581.1| - 2 8.2 16.5 2.5 7.9 2.0 3.2 3 0 0 3 3 3 0 Baculovirus protein of unknown function (DUF843) DUF4131 PF13567.1 gi|307594264|ref|YP_003900581.1| - 2.2 7.6 11.6 1.4 8.2 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) MSC PF09402.5 gi|307594264|ref|YP_003900581.1| - 2.2 6.9 11.5 2.9 6.4 0.7 2.8 1 1 2 3 3 3 0 Man1-Src1p-C-terminal domain DNA_pol_B_exo1 PF03104.14 gi|307594266|ref|YP_003900583.1| - 0.0012 17.7 0.1 0.0094 14.8 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|307594266|ref|YP_003900583.1| - 0.0026 17.5 0.0 0.023 14.5 0.0 2.1 1 1 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|307594266|ref|YP_003900583.1| - 0.1 12.0 0.0 0.29 10.6 0.0 1.8 1 1 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Imm5 PF14423.1 gi|307594266|ref|YP_003900583.1| - 0.23 11.0 1.5 22 4.6 0.0 2.6 3 0 0 3 3 3 0 Immunity protein Imm5 HNH PF01844.18 gi|307594267|ref|YP_003900584.1| - 0.00096 18.9 0.8 0.0022 17.8 0.5 1.6 1 0 0 1 1 1 1 HNH endonuclease Methyltransf_11 PF08241.7 gi|307594269|ref|YP_003900586.1| - 2e-21 76.2 0.0 7.8e-20 71.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|307594269|ref|YP_003900586.1| - 1.6e-14 53.9 0.0 2.2e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307594269|ref|YP_003900586.1| - 9.5e-12 44.7 0.0 2.6e-11 43.3 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307594269|ref|YP_003900586.1| - 1.9e-11 44.3 0.0 9.9e-11 42.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|307594269|ref|YP_003900586.1| - 4.9e-10 38.9 0.0 1.9e-09 37.0 0.0 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|307594269|ref|YP_003900586.1| - 1.9e-09 38.0 0.0 6.8e-09 36.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307594269|ref|YP_003900586.1| - 6.6e-08 32.8 0.0 1.1e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|307594269|ref|YP_003900586.1| - 2e-06 27.3 0.0 3.1e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|307594269|ref|YP_003900586.1| - 4.4e-05 23.2 0.0 0.00012 21.8 0.0 1.6 2 0 0 2 2 2 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|307594269|ref|YP_003900586.1| - 0.00049 20.1 0.1 0.0023 17.9 0.1 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|307594269|ref|YP_003900586.1| - 0.0024 16.2 0.0 0.0036 15.7 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.6 gi|307594269|ref|YP_003900586.1| - 0.0065 15.8 0.0 0.015 14.7 0.0 1.6 1 1 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.9 gi|307594269|ref|YP_003900586.1| - 0.011 15.0 0.0 0.039 13.3 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|307594269|ref|YP_003900586.1| - 0.02 13.6 0.0 0.046 12.4 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) NNMT_PNMT_TEMT PF01234.12 gi|307594269|ref|YP_003900586.1| - 0.051 12.5 0.0 0.087 11.7 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family Methyltransf_24 PF13578.1 gi|307594269|ref|YP_003900586.1| - 0.061 14.1 0.0 0.18 12.6 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain DREV PF05219.7 gi|307594269|ref|YP_003900586.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.4 1 1 0 1 1 1 0 DREV methyltransferase PmrD PF11183.3 gi|307594271|ref|YP_003900588.1| - 0.0032 17.2 0.0 0.004 16.9 0.0 1.2 1 0 0 1 1 1 1 Polymyxin resistance protein PmrD DUF3644 PF12358.3 gi|307594271|ref|YP_003900588.1| - 0.064 13.5 0.0 0.066 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3644) Bcr-Abl_Oligo PF09036.5 gi|307594271|ref|YP_003900588.1| - 0.086 12.8 1.1 0.97 9.4 0.1 2.0 1 1 1 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain GrpB PF04229.9 gi|307594275|ref|YP_003900592.1| - 0.094 12.4 0.0 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 GrpB protein DEAD PF00270.24 gi|307594277|ref|YP_003900594.1| - 0.0031 17.0 0.0 1.1 8.7 0.0 3.2 2 1 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|307594277|ref|YP_003900594.1| - 0.012 15.4 0.0 0.35 10.6 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit MacB_PCD PF12704.2 gi|307594278|ref|YP_003900595.1| - 0.068 12.7 0.8 0.12 11.9 0.6 1.3 1 0 0 1 1 1 0 MacB-like periplasmic core domain DUF4559 PF15112.1 gi|307594278|ref|YP_003900595.1| - 0.08 12.0 0.2 0.11 11.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Apolipoprotein PF01442.13 gi|307594278|ref|YP_003900595.1| - 0.11 11.9 2.2 0.21 11.0 0.9 1.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Transcrip_act PF04949.8 gi|307594278|ref|YP_003900595.1| - 0.3 10.7 6.3 0.93 9.0 0.6 2.3 1 1 1 2 2 2 0 Transcriptional activator YtxH PF12732.2 gi|307594278|ref|YP_003900595.1| - 0.57 10.5 2.2 8.1 6.8 0.0 2.6 2 1 0 2 2 2 0 YtxH-like protein DUF4164 PF13747.1 gi|307594278|ref|YP_003900595.1| - 2.3 8.4 7.6 2.4 8.3 1.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) AAA_10 PF12846.2 gi|307594281|ref|YP_003900598.1| - 4.5e-12 46.0 0.0 9.1e-12 45.0 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|307594281|ref|YP_003900598.1| - 1.7e-05 23.6 0.0 7e-05 21.6 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|307594281|ref|YP_003900598.1| - 0.00014 22.0 0.0 0.064 13.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|307594281|ref|YP_003900598.1| - 0.0029 17.3 0.0 0.038 13.6 0.0 2.2 2 0 0 2 2 2 1 Archaeal ATPase DUF853 PF05872.7 gi|307594281|ref|YP_003900598.1| - 0.0049 15.2 0.0 0.67 8.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|307594281|ref|YP_003900598.1| - 0.0066 16.2 0.0 0.014 15.2 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|307594281|ref|YP_003900598.1| - 0.016 14.6 0.0 0.11 11.9 0.0 2.2 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|307594281|ref|YP_003900598.1| - 0.017 15.0 0.0 0.8 9.6 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.14 gi|307594281|ref|YP_003900598.1| - 0.022 14.1 0.0 0.04 13.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|307594281|ref|YP_003900598.1| - 0.069 13.3 0.1 0.91 9.7 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|307594281|ref|YP_003900598.1| - 0.081 12.4 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|307594281|ref|YP_003900598.1| - 0.083 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain PEPCK_ATP PF01293.15 gi|307594281|ref|YP_003900598.1| - 0.2 10.1 0.0 0.31 9.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase HAD_2 PF13419.1 gi|307594282|ref|YP_003900599.1| - 0.09 12.9 0.0 0.2 11.8 0.0 1.6 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Pox_A_type_inc PF04508.7 gi|307594283|ref|YP_003900600.1| - 0.15 11.8 6.4 0.13 12.0 0.2 3.0 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat Hemerythrin PF01814.18 gi|307594283|ref|YP_003900600.1| - 0.23 11.6 5.0 7.4 6.7 0.0 4.0 3 1 0 3 3 3 0 Hemerythrin HHE cation binding domain AAA_10 PF12846.2 gi|307594284|ref|YP_003900601.1| - 8.9e-21 74.6 0.0 1.8e-11 44.0 0.0 2.4 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|307594284|ref|YP_003900601.1| - 5.5e-16 59.0 0.0 8.9e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|307594284|ref|YP_003900601.1| - 2.1e-08 33.1 0.0 2.2e-05 23.3 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|307594284|ref|YP_003900601.1| - 2.5e-07 30.3 0.0 6e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|307594284|ref|YP_003900601.1| - 3.5e-06 27.1 0.0 0.0092 16.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF853 PF05872.7 gi|307594284|ref|YP_003900601.1| - 0.00052 18.4 0.0 0.05 11.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_16 PF13191.1 gi|307594284|ref|YP_003900601.1| - 0.00099 19.1 0.0 0.0036 17.2 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain ResIII PF04851.10 gi|307594284|ref|YP_003900601.1| - 0.0021 17.9 0.0 0.0046 16.7 0.0 1.5 2 0 0 2 2 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|307594284|ref|YP_003900601.1| - 0.0053 16.2 0.1 0.12 11.8 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|307594284|ref|YP_003900601.1| - 0.023 14.4 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain IstB_IS21 PF01695.12 gi|307594284|ref|YP_003900601.1| - 0.027 13.9 0.2 0.093 12.1 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SE PF00437.15 gi|307594284|ref|YP_003900601.1| - 0.032 13.1 0.0 0.06 12.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|307594284|ref|YP_003900601.1| - 0.041 13.6 0.0 0.091 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|307594284|ref|YP_003900601.1| - 0.051 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|307594284|ref|YP_003900601.1| - 0.068 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|307594284|ref|YP_003900601.1| - 0.09 12.9 0.1 0.39 10.9 0.0 2.2 3 0 0 3 3 1 0 ATPase family associated with various cellular activities (AAA) T4SS-DNA_transf PF02534.9 gi|307594284|ref|YP_003900601.1| - 0.17 10.4 0.0 0.49 8.9 0.0 1.6 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer AAA_24 PF13479.1 gi|307594284|ref|YP_003900601.1| - 0.22 11.0 0.0 0.85 9.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Unstab_antitox PF09720.5 gi|307594286|ref|YP_003900603.1| - 0.14 11.8 0.1 0.31 10.7 0.1 1.6 1 0 0 1 1 1 0 Putative addiction module component CbiA PF01656.18 gi|307594290|ref|YP_003900607.1| - 6.6e-10 38.7 0.2 1.3e-09 37.7 0.2 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|307594290|ref|YP_003900607.1| - 3e-06 27.2 0.1 5.5e-06 26.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|307594290|ref|YP_003900607.1| - 0.00039 19.8 0.1 0.00083 18.7 0.0 1.5 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|307594290|ref|YP_003900607.1| - 0.0013 17.8 0.6 0.003 16.6 0.2 1.7 2 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|307594290|ref|YP_003900607.1| - 0.0067 15.5 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|307594290|ref|YP_003900607.1| - 0.017 14.5 0.0 0.029 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|307594290|ref|YP_003900607.1| - 0.043 13.0 0.0 0.068 12.3 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RNA_helicase PF00910.17 gi|307594290|ref|YP_003900607.1| - 0.14 12.3 0.1 0.42 10.8 0.0 1.9 2 0 0 2 2 2 0 RNA helicase T2SE PF00437.15 gi|307594291|ref|YP_003900608.1| - 1.1e-23 83.5 0.1 2.9e-23 82.1 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|307594291|ref|YP_003900608.1| - 0.00085 18.8 0.1 0.0018 17.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|307594291|ref|YP_003900608.1| - 0.0016 18.7 0.0 0.0053 17.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|307594291|ref|YP_003900608.1| - 0.0034 16.5 0.0 0.006 15.7 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.1 gi|307594291|ref|YP_003900608.1| - 0.0036 17.6 0.0 0.0065 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|307594291|ref|YP_003900608.1| - 0.0059 15.8 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain DEAD PF00270.24 gi|307594291|ref|YP_003900608.1| - 0.0084 15.6 0.0 0.082 12.3 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|307594291|ref|YP_003900608.1| - 0.0097 15.6 0.7 0.065 12.9 0.5 2.4 1 1 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|307594291|ref|YP_003900608.1| - 0.018 15.2 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|307594291|ref|YP_003900608.1| - 0.02 15.7 0.1 0.063 14.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|307594291|ref|YP_003900608.1| - 0.027 14.4 0.0 0.05 13.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_16 PF13191.1 gi|307594291|ref|YP_003900608.1| - 0.044 13.7 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|307594291|ref|YP_003900608.1| - 0.08 12.8 0.5 0.43 10.4 0.1 2.3 2 1 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|307594291|ref|YP_003900608.1| - 0.2 10.1 0.0 0.31 9.4 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein DUF3592 PF12158.3 gi|307594293|ref|YP_003900610.1| - 0.069 12.9 0.8 0.1 12.4 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3592) PsbJ PF01788.12 gi|307594293|ref|YP_003900610.1| - 0.71 9.4 6.2 2.2 7.8 4.3 1.8 1 0 0 1 1 1 0 PsbJ DUF3329 PF11808.3 gi|307594294|ref|YP_003900611.1| - 0.04 13.9 0.0 0.086 12.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3329) DUF613 PF04764.7 gi|307594294|ref|YP_003900611.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF613) Choline_transpo PF04515.7 gi|307594296|ref|YP_003900613.1| - 0.0072 15.1 0.5 0.01 14.6 0.3 1.3 1 1 0 1 1 1 1 Plasma-membrane choline transporter DUF1622 PF07784.6 gi|307594296|ref|YP_003900613.1| - 0.057 13.0 3.2 1.8 8.2 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1622) CRA PF06589.6 gi|307594296|ref|YP_003900613.1| - 0.15 11.3 0.1 0.25 10.6 0.1 1.4 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) OppC_N PF12911.2 gi|307594297|ref|YP_003900614.1| - 0.00095 18.4 1.1 0.0041 16.4 0.8 2.1 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C DUF1049 PF06305.6 gi|307594297|ref|YP_003900614.1| - 1.8 8.1 5.3 0.76 9.2 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Rad51 PF08423.6 gi|307594299|ref|YP_003900616.1| - 7.3e-35 120.1 0.0 9.1e-35 119.7 0.0 1.1 1 0 0 1 1 1 1 Rad51 KaiC PF06745.8 gi|307594299|ref|YP_003900616.1| - 4.2e-17 62.0 0.0 6e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|307594299|ref|YP_003900616.1| - 2.1e-08 33.8 0.1 3.5e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|307594299|ref|YP_003900616.1| - 2.2e-07 30.2 0.0 3.1e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA PF00004.24 gi|307594299|ref|YP_003900616.1| - 0.0092 16.1 0.0 0.029 14.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SAM_2 PF07647.12 gi|307594299|ref|YP_003900616.1| - 0.085 12.7 0.3 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 SAM domain (Sterile alpha motif) ApbA_C PF08546.6 gi|307594300|ref|YP_003900617.1| - 0.028 14.4 0.1 0.62 10.0 0.0 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal RHH_1 PF01402.16 gi|307594303|ref|YP_003900620.1| - 6.1e-05 22.7 0.4 0.00013 21.7 0.3 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF217 PF02697.9 gi|307594303|ref|YP_003900620.1| - 0.00084 19.5 0.0 0.0011 19.1 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized ACR, COG1753 SWIM PF04434.12 gi|307594304|ref|YP_003900621.1| - 0.029 13.8 0.2 0.069 12.6 0.2 1.6 1 0 0 1 1 1 0 SWIM zinc finger AAA_5 PF07728.9 gi|307594307|ref|YP_003900624.1| - 2.7e-08 33.6 0.0 0.02 14.5 0.0 3.4 2 1 1 3 3 3 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|307594307|ref|YP_003900624.1| - 6.4e-07 29.0 0.0 1.5e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain MCM PF00493.18 gi|307594307|ref|YP_003900624.1| - 9.5e-05 21.3 0.1 0.00045 19.1 0.0 2.1 2 1 0 2 2 2 1 MCM2/3/5 family AAA_16 PF13191.1 gi|307594307|ref|YP_003900624.1| - 0.00053 20.0 0.1 0.014 15.3 0.1 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|307594307|ref|YP_003900624.1| - 0.00066 19.5 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|307594307|ref|YP_003900624.1| - 0.00082 18.8 0.0 0.0018 17.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|307594307|ref|YP_003900624.1| - 0.0017 18.6 0.0 0.0033 17.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA PF00004.24 gi|307594307|ref|YP_003900624.1| - 0.0033 17.6 0.1 0.0092 16.1 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|307594307|ref|YP_003900624.1| - 0.0046 16.1 0.1 0.042 13.0 0.1 2.4 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|307594307|ref|YP_003900624.1| - 0.0065 16.4 0.1 0.024 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|307594307|ref|YP_003900624.1| - 0.011 15.2 0.1 0.028 13.8 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|307594307|ref|YP_003900624.1| - 0.043 13.9 0.1 0.35 11.0 0.0 2.2 1 1 1 2 2 2 0 AAA domain cobW PF02492.14 gi|307594307|ref|YP_003900624.1| - 0.046 13.1 0.0 0.081 12.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|307594307|ref|YP_003900624.1| - 0.056 13.0 0.0 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|307594307|ref|YP_003900624.1| - 0.06 12.9 0.0 4.4 6.9 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|307594307|ref|YP_003900624.1| - 0.073 13.8 0.0 0.13 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2016 PF09436.5 gi|307594307|ref|YP_003900624.1| - 0.075 12.6 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2016) AAA_25 PF13481.1 gi|307594307|ref|YP_003900624.1| - 0.087 12.2 0.0 0.35 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.7 gi|307594307|ref|YP_003900624.1| - 0.092 11.7 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AnfG_VnfG PF03139.10 gi|307594309|ref|YP_003900626.1| - 0.06 13.1 0.1 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Vanadium/alternative nitrogenase delta subunit CoiA PF06054.6 gi|307594311|ref|YP_003900628.1| - 2.1e-06 26.8 0.1 0.0068 15.3 0.0 2.2 1 1 1 2 2 2 2 Competence protein CoiA-like family AAA_10 PF12846.2 gi|307594313|ref|YP_003900630.1| - 1.7e-20 73.6 0.0 4.9e-13 49.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|307594313|ref|YP_003900630.1| - 3.4e-08 33.5 0.0 4e-07 30.1 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA PF00004.24 gi|307594313|ref|YP_003900630.1| - 5.3e-08 33.1 0.2 8.8e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|307594313|ref|YP_003900630.1| - 1e-07 31.6 0.2 3.7e-06 26.5 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|307594313|ref|YP_003900630.1| - 3.7e-07 28.8 0.0 0.0035 15.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_25 PF13481.1 gi|307594313|ref|YP_003900630.1| - 7.2e-06 25.5 0.0 0.033 13.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.4 gi|307594313|ref|YP_003900630.1| - 8.3e-06 24.6 0.0 1.3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|307594313|ref|YP_003900630.1| - 0.00034 20.7 0.0 0.046 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain Zot PF05707.7 gi|307594313|ref|YP_003900630.1| - 0.00069 19.1 0.0 0.011 15.1 0.0 2.5 3 0 0 3 3 3 1 Zonular occludens toxin (Zot) T2SE PF00437.15 gi|307594313|ref|YP_003900630.1| - 0.0021 17.0 0.1 0.0039 16.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|307594313|ref|YP_003900630.1| - 0.0059 16.1 0.0 0.79 9.1 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase NACHT PF05729.7 gi|307594313|ref|YP_003900630.1| - 0.0084 15.7 0.0 0.024 14.2 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.1 gi|307594313|ref|YP_003900630.1| - 0.018 15.0 0.0 0.076 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain DUF2075 PF09848.4 gi|307594313|ref|YP_003900630.1| - 0.042 12.8 0.0 0.38 9.6 0.0 2.2 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|307594313|ref|YP_003900630.1| - 0.05 13.4 0.0 2.7 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|307594313|ref|YP_003900630.1| - 0.067 13.4 0.0 0.19 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.7 gi|307594313|ref|YP_003900630.1| - 0.093 12.0 0.3 0.17 11.1 0.2 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein MobB PF03205.9 gi|307594313|ref|YP_003900630.1| - 0.12 12.0 0.1 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ResIII PF04851.10 gi|307594313|ref|YP_003900630.1| - 0.13 12.1 0.0 1.2 8.8 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit SRP54 PF00448.17 gi|307594313|ref|YP_003900630.1| - 0.18 11.2 0.1 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|307594313|ref|YP_003900630.1| - 0.19 12.5 1.5 1.3 9.8 1.1 2.5 1 1 0 1 1 1 0 AAA domain NurA PF09376.5 gi|307594314|ref|YP_003900631.1| - 0.0061 16.0 0.0 0.0076 15.7 0.0 1.1 1 0 0 1 1 1 1 NurA domain DUF4560 PF15118.1 gi|307594314|ref|YP_003900631.1| - 0.02 14.6 0.0 0.047 13.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4560) RPA PF10134.4 gi|307594314|ref|YP_003900631.1| - 0.09 12.0 0.0 0.09 12.0 0.0 1.1 1 0 0 1 1 1 0 Replication initiator protein A NurA PF09376.5 gi|307594315|ref|YP_003900632.1| - 7e-05 22.4 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 NurA domain HTH_45 PF14947.1 gi|307594318|ref|YP_003900635.1| - 3.3e-06 26.8 0.1 5.7e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|307594318|ref|YP_003900635.1| - 4.3e-05 22.8 0.0 9.8e-05 21.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Mrr_N PF14338.1 gi|307594318|ref|YP_003900635.1| - 0.0003 20.7 0.0 0.012 15.7 0.0 2.5 3 0 0 3 3 2 1 Mrr N-terminal domain HTH_36 PF13730.1 gi|307594318|ref|YP_003900635.1| - 0.00039 20.4 0.3 0.0013 18.7 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain FeoC PF09012.5 gi|307594318|ref|YP_003900635.1| - 0.00046 19.8 0.0 0.0008 19.0 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator MarR_2 PF12802.2 gi|307594318|ref|YP_003900635.1| - 0.00048 19.7 0.0 0.0021 17.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|307594318|ref|YP_003900635.1| - 0.0014 18.2 0.1 0.0087 15.7 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|307594318|ref|YP_003900635.1| - 0.0022 17.6 0.0 0.0082 15.8 0.0 1.8 2 0 0 2 2 2 1 MarR family DUF4095 PF13338.1 gi|307594318|ref|YP_003900635.1| - 0.0027 17.8 0.0 0.0053 16.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4095) HTH_27 PF13463.1 gi|307594318|ref|YP_003900635.1| - 0.0031 17.7 0.0 0.0097 16.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|307594318|ref|YP_003900635.1| - 0.014 15.1 0.0 0.031 13.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|307594318|ref|YP_003900635.1| - 0.017 14.7 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|307594318|ref|YP_003900635.1| - 0.022 14.5 0.0 0.19 11.5 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MotA_activ PF09114.5 gi|307594318|ref|YP_003900635.1| - 0.069 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcription factor MotA, activation domain RteC PF09357.5 gi|307594318|ref|YP_003900635.1| - 0.12 12.2 0.1 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 RteC protein DUF4423 PF14394.1 gi|307594318|ref|YP_003900635.1| - 0.15 11.6 0.0 0.39 10.2 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) MarR_2 PF12802.2 gi|307594321|ref|YP_003900638.1| - 0.0049 16.4 0.0 0.018 14.6 0.0 1.9 1 1 0 1 1 1 1 MarR family Penicillinase_R PF03965.11 gi|307594321|ref|YP_003900638.1| - 0.0054 16.8 0.0 0.014 15.4 0.0 1.7 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.17 gi|307594321|ref|YP_003900638.1| - 0.035 13.8 0.0 0.12 12.0 0.0 2.0 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|307594321|ref|YP_003900638.1| - 0.11 12.8 0.0 0.43 10.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain AAA_10 PF12846.2 gi|307594323|ref|YP_003900640.1| - 0.0012 18.3 4.8 0.67 9.3 0.0 4.4 3 1 0 3 3 3 1 AAA-like domain AAA PF00004.24 gi|307594323|ref|YP_003900640.1| - 0.012 15.8 0.2 0.44 10.7 0.0 3.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF4208 PF13907.1 gi|307594323|ref|YP_003900640.1| - 0.045 13.9 5.4 1.9 8.7 0.3 4.2 4 0 0 4 4 4 0 Domain of unknown function (DUF4208) MobB PF03205.9 gi|307594323|ref|YP_003900640.1| - 0.05 13.3 0.0 0.16 11.6 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|307594323|ref|YP_003900640.1| - 0.054 13.6 3.9 0.093 12.8 0.0 3.5 3 2 0 3 3 2 0 AAA domain YojJ PF10372.4 gi|307594323|ref|YP_003900640.1| - 0.074 12.9 1.5 2.1 8.2 0.0 3.4 3 0 0 3 3 3 0 Bacterial membrane-spanning protein N-terminus AAA_16 PF13191.1 gi|307594323|ref|YP_003900640.1| - 0.091 12.7 0.1 9.1 6.2 0.1 3.8 4 1 0 4 4 4 0 AAA ATPase domain NACHT PF05729.7 gi|307594323|ref|YP_003900640.1| - 0.096 12.3 0.0 0.33 10.6 0.0 2.0 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|307594323|ref|YP_003900640.1| - 0.21 11.3 0.1 0.49 10.1 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain NPV_P10 PF05531.7 gi|307594323|ref|YP_003900640.1| - 0.81 9.9 17.4 3 8.1 0.4 5.3 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.6 gi|307594323|ref|YP_003900640.1| - 3.3 8.1 14.8 14 6.1 0.7 4.6 2 1 1 3 3 3 0 Syntaxin 6, N-terminal Reo_sigmaC PF04582.7 gi|307594323|ref|YP_003900640.1| - 3.8 6.5 8.8 9.4 5.3 0.1 2.6 2 1 0 2 2 2 0 Reovirus sigma C capsid protein Allexi_40kDa PF05549.6 gi|307594323|ref|YP_003900640.1| - 5.9 6.0 8.0 2.4 7.4 0.2 3.2 3 0 0 3 3 3 0 Allexivirus 40kDa protein Med4 PF10018.4 gi|307594323|ref|YP_003900640.1| - 8.7 5.6 7.9 17 4.7 0.2 3.3 3 0 0 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 GLE1 PF07817.8 gi|307594324|ref|YP_003900641.1| - 0.0031 16.4 4.3 0.017 14.0 0.6 2.4 2 0 0 2 2 2 1 GLE1-like protein Occludin_ELL PF07303.8 gi|307594324|ref|YP_003900641.1| - 0.0066 17.1 5.9 1.7 9.4 0.4 3.2 4 0 0 4 4 3 2 Occludin homology domain NdhM PF10664.4 gi|307594324|ref|YP_003900641.1| - 0.1 12.5 1.1 4.6 7.2 0.4 2.9 1 1 1 2 2 2 0 Cyanobacterial and plastid NDH-1 subunit M Syntaxin-6_N PF09177.6 gi|307594324|ref|YP_003900641.1| - 0.12 12.8 9.7 2.4 8.6 0.2 4.3 3 1 1 4 4 4 0 Syntaxin 6, N-terminal Apolipoprotein PF01442.13 gi|307594324|ref|YP_003900641.1| - 0.13 11.7 2.0 0.77 9.2 0.1 2.5 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain IF-2B PF01008.12 gi|307594324|ref|YP_003900641.1| - 0.2 10.6 2.0 1.1 8.1 0.7 2.3 1 1 1 2 2 2 0 Initiation factor 2 subunit family LXG PF04740.7 gi|307594324|ref|YP_003900641.1| - 0.22 11.2 8.6 0.89 9.3 0.1 3.9 3 1 0 3 3 3 0 LXG domain of WXG superfamily MutS_III PF05192.13 gi|307594324|ref|YP_003900641.1| - 0.3 10.8 6.3 61 3.3 4.4 3.0 1 1 0 1 1 1 0 MutS domain III V-ATPase_C PF03223.10 gi|307594324|ref|YP_003900641.1| - 0.46 9.3 6.3 0.17 10.7 0.7 2.3 2 0 0 2 2 2 0 V-ATPase subunit C WEMBL PF05701.6 gi|307594324|ref|YP_003900641.1| - 0.47 8.8 4.5 1.7 7.0 1.0 2.1 2 0 0 2 2 2 0 Weak chloroplast movement under blue light GrpE PF01025.14 gi|307594324|ref|YP_003900641.1| - 1.1 8.7 9.0 8.7 5.8 0.0 3.5 2 2 1 3 3 3 0 GrpE Cortex-I_coil PF09304.5 gi|307594324|ref|YP_003900641.1| - 2 8.4 9.2 15 5.6 0.6 4.1 3 1 1 4 4 4 0 Cortexillin I, coiled coil Laminin_II PF06009.7 gi|307594324|ref|YP_003900641.1| - 2.8 7.7 9.7 1.5 8.5 0.1 3.1 4 0 0 4 4 4 0 Laminin Domain II Mad3_BUB1_I PF08311.7 gi|307594324|ref|YP_003900641.1| - 3.9 7.2 8.0 3.3 7.4 0.1 3.5 4 0 0 4 4 4 0 Mad3/BUB1 homology region 1 DASH_Dad1 PF08649.5 gi|307594324|ref|YP_003900641.1| - 4.3 7.1 25.8 0.17 11.5 0.4 6.3 5 2 2 7 7 7 0 DASH complex subunit Dad1 DUF2408 PF10303.4 gi|307594324|ref|YP_003900641.1| - 4.4 7.4 17.8 0.18 11.9 0.7 4.2 3 1 1 4 4 4 0 Protein of unknown function (DUF2408) Sec5 PF15469.1 gi|307594324|ref|YP_003900641.1| - 8.8 6.0 15.0 19 4.9 0.4 3.5 3 1 0 3 3 3 0 Exocyst complex component Sec5 TBPIP PF07106.8 gi|307594324|ref|YP_003900641.1| - 9.1 5.7 17.1 1.7 8.1 3.5 3.4 3 2 1 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) RBD-FIP PF09457.5 gi|307594324|ref|YP_003900641.1| - 9.4 6.1 10.2 26 4.7 0.2 4.6 5 0 0 5 5 4 0 FIP domain DEAD PF00270.24 gi|307594325|ref|YP_003900642.1| - 4.9e-12 45.6 0.0 8.7e-08 31.8 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|307594325|ref|YP_003900642.1| - 4.5e-08 32.8 0.1 1.2e-07 31.4 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|307594325|ref|YP_003900642.1| - 5.9e-05 22.9 0.0 0.001 18.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Condensin2nSMC PF12422.3 gi|307594325|ref|YP_003900642.1| - 0.022 14.5 0.1 0.086 12.5 0.0 2.1 2 0 0 2 2 2 0 Condensin II non structural maintenance of chromosomes subunit BCL_N PF04714.8 gi|307594325|ref|YP_003900642.1| - 2.3 7.8 7.8 3.7 7.1 0.0 3.9 4 0 0 4 4 4 0 BCL7, N-terminal conserver region DUF1998 PF09369.5 gi|307594326|ref|YP_003900643.1| - 0.0031 18.0 2.0 0.0098 16.4 0.0 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF1998) Baculo_p24 PF05073.7 gi|307594326|ref|YP_003900643.1| - 0.017 14.6 1.5 0.68 9.4 0.5 2.8 2 0 0 2 2 2 0 Baculovirus P24 capsid protein PLDc_2 PF13091.1 gi|307594327|ref|YP_003900644.1| - 1.3e-11 44.3 0.2 2.7e-11 43.2 0.1 1.5 1 1 0 1 1 1 1 PLD-like domain PLDc PF00614.17 gi|307594327|ref|YP_003900644.1| - 0.017 14.9 0.1 0.038 13.8 0.1 1.6 1 0 0 1 1 1 0 Phospholipase D Active site motif DUF165 PF02592.10 gi|307594328|ref|YP_003900645.1| - 7.9e-06 26.0 0.0 1e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, YhhQ family COG1738 Fumarate_red_D PF02313.12 gi|307594328|ref|YP_003900645.1| - 0.021 14.7 0.1 0.023 14.5 0.0 1.0 1 0 0 1 1 1 0 Fumarate reductase subunit D DUF165 PF02592.10 gi|307594329|ref|YP_003900646.1| - 1.3e-12 48.0 3.5 1.3e-12 48.0 2.4 1.9 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 GtrA PF04138.9 gi|307594329|ref|YP_003900646.1| - 7.7 6.4 15.5 0.21 11.5 2.0 2.8 2 1 0 3 3 3 0 GtrA-like protein TGT PF01702.13 gi|307594330|ref|YP_003900647.1| - 0.0031 16.8 0.0 0.0075 15.5 0.0 1.8 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase HTH_45 PF14947.1 gi|307594331|ref|YP_003900648.1| - 0.0023 17.7 0.0 0.0071 16.1 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2791 PF10923.3 gi|307594332|ref|YP_003900649.1| - 1.2e-10 40.6 0.0 2.6e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 P-loop Domain of unknown function (DUF2791) Arch_ATPase PF01637.13 gi|307594332|ref|YP_003900649.1| - 1.3e-10 41.3 0.0 4e-10 39.8 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|307594332|ref|YP_003900649.1| - 0.00032 20.3 0.0 0.065 12.8 0.0 2.2 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.1 gi|307594332|ref|YP_003900649.1| - 0.00046 20.3 0.0 0.0097 16.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307594332|ref|YP_003900649.1| - 0.0017 18.4 0.0 0.0043 17.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain DAP3 PF10236.4 gi|307594332|ref|YP_003900649.1| - 0.0021 17.0 0.0 1.6 7.5 0.0 2.6 2 1 1 3 3 3 2 Mitochondrial ribosomal death-associated protein 3 TrwB_AAD_bind PF10412.4 gi|307594332|ref|YP_003900649.1| - 0.043 12.4 0.0 0.061 11.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Bac_DnaA PF00308.13 gi|307594332|ref|YP_003900649.1| - 0.066 12.8 0.1 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein TGT PF01702.13 gi|307594333|ref|YP_003900650.1| - 0.00031 20.0 0.0 0.00038 19.8 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Dioxygenase_C PF00775.16 gi|307594333|ref|YP_003900650.1| - 0.095 11.9 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Dioxygenase GIY-YIG PF01541.19 gi|307594334|ref|YP_003900651.1| - 0.068 13.5 0.1 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 GIY-YIG catalytic domain 4HB_MCP_1 PF12729.2 gi|307594335|ref|YP_003900652.1| - 0.001 18.4 0.1 0.0012 18.2 0.1 1.2 1 0 0 1 1 1 1 Four helix bundle sensory module for signal transduction DUF2959 PF11172.3 gi|307594335|ref|YP_003900652.1| - 0.025 14.3 0.1 0.033 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) IncA PF04156.9 gi|307594335|ref|YP_003900652.1| - 0.1 12.2 0.3 0.12 11.9 0.2 1.1 1 0 0 1 1 1 0 IncA protein SKG6 PF08693.5 gi|307594336|ref|YP_003900653.1| - 6 6.2 12.1 11 5.4 8.4 1.4 1 0 0 1 1 1 0 Transmembrane alpha-helix domain ThiC PF01964.13 gi|307594337|ref|YP_003900654.1| - 5.4e-164 545.7 0.0 6.9e-164 545.3 0.0 1.0 1 0 0 1 1 1 1 ThiC family IRF-2BP1_2 PF11261.3 gi|307594337|ref|YP_003900654.1| - 0.16 11.4 0.9 0.85 9.1 0.1 2.2 2 0 0 2 2 2 0 Interferon regulatory factor 2-binding protein zinc finger CbiK PF06180.6 gi|307594338|ref|YP_003900655.1| - 0.14 11.2 0.0 0.18 10.8 0.0 1.1 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) PaREP1 PF05942.6 gi|307594339|ref|YP_003900656.1| - 1.1e-30 105.8 5.2 1.3e-30 105.6 2.8 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|307594339|ref|YP_003900656.1| - 0.027 14.3 1.9 0.084 12.7 1.2 2.0 1 1 0 1 1 1 0 HEPN domain Hydant_A_N PF05378.8 gi|307594339|ref|YP_003900656.1| - 0.13 11.7 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region DUF3242 PF11586.3 gi|307594339|ref|YP_003900656.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3242) Semialdhyde_dh PF01118.19 gi|307594340|ref|YP_003900657.1| - 8.2e-34 116.5 0.0 1.3e-33 115.8 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|307594340|ref|YP_003900657.1| - 5.8e-16 58.8 0.1 1.3e-15 57.7 0.0 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|307594340|ref|YP_003900657.1| - 0.011 16.2 0.0 0.036 14.5 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|307594340|ref|YP_003900657.1| - 0.059 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CpcD PF01383.16 gi|307594342|ref|YP_003900659.1| - 0.087 13.0 0.2 0.1 12.7 0.1 1.1 1 0 0 1 1 1 0 CpcD/allophycocyanin linker domain RimK PF08443.6 gi|307594343|ref|YP_003900660.1| - 3e-40 137.7 0.0 4e-40 137.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|307594343|ref|YP_003900660.1| - 1.1e-11 44.1 0.0 2.3e-11 43.1 0.0 1.6 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|307594343|ref|YP_003900660.1| - 5.7e-09 36.0 0.0 2e-08 34.2 0.0 1.8 1 1 1 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|307594343|ref|YP_003900660.1| - 1.6e-07 31.2 0.0 2.1e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|307594343|ref|YP_003900660.1| - 6e-07 29.0 0.0 0.0013 18.1 0.0 2.1 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|307594343|ref|YP_003900660.1| - 0.0008 18.2 0.0 0.0021 16.8 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Aminotran_3 PF00202.16 gi|307594344|ref|YP_003900661.1| - 1.9e-99 332.7 0.0 2.3e-99 332.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III HMGL-like PF00682.14 gi|307594345|ref|YP_003900662.1| - 1e-27 97.3 0.0 1.5e-27 96.7 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Peptidase_M20 PF01546.23 gi|307594346|ref|YP_003900663.1| - 7e-23 81.1 0.0 8.6e-23 80.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|307594346|ref|YP_003900663.1| - 4.4e-11 42.5 0.0 8.8e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|307594346|ref|YP_003900663.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M28 RimK PF08443.6 gi|307594347|ref|YP_003900664.1| - 2.4e-50 170.6 0.0 3.2e-50 170.2 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|307594347|ref|YP_003900664.1| - 3.2e-13 49.1 0.0 5e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|307594347|ref|YP_003900664.1| - 5e-13 49.2 0.0 7.8e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|307594347|ref|YP_003900664.1| - 7.4e-12 44.6 0.0 9.9e-12 44.2 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|307594347|ref|YP_003900664.1| - 2.6e-10 40.3 0.0 7.2e-10 38.9 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|307594347|ref|YP_003900664.1| - 6.2e-07 28.9 0.1 2.9e-06 26.7 0.0 1.9 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|307594347|ref|YP_003900664.1| - 8.2e-05 21.9 0.0 0.0021 17.2 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|307594347|ref|YP_003900664.1| - 0.00016 21.1 0.0 0.006 15.9 0.0 2.4 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|307594347|ref|YP_003900664.1| - 0.0047 16.2 0.0 0.0091 15.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|307594347|ref|YP_003900664.1| - 0.018 13.8 0.0 0.33 9.7 0.0 2.2 2 0 0 2 2 2 0 YheC/D like ATP-grasp ATPgrasp_ST PF14397.1 gi|307594347|ref|YP_003900664.1| - 0.04 13.0 0.0 0.48 9.4 0.0 2.3 2 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp zinc_ribbon_5 PF13719.1 gi|307594348|ref|YP_003900665.1| - 7.6e-06 25.4 1.2 0.05 13.1 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|307594348|ref|YP_003900665.1| - 1.2e-05 24.8 1.1 0.081 12.6 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|307594348|ref|YP_003900665.1| - 0.0003 20.4 0.1 0.00032 20.3 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|307594348|ref|YP_003900665.1| - 0.00054 19.8 0.3 0.00076 19.3 0.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|307594348|ref|YP_003900665.1| - 0.00061 19.1 0.7 0.059 12.8 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-HYPF PF07503.7 gi|307594348|ref|YP_003900665.1| - 0.0012 18.2 0.9 0.56 9.6 0.0 2.1 2 0 0 2 2 2 2 HypF finger DZR PF12773.2 gi|307594348|ref|YP_003900665.1| - 0.0032 17.2 0.2 0.0044 16.8 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon Cys_rich_CPXG PF14255.1 gi|307594348|ref|YP_003900665.1| - 0.0081 15.9 1.2 1.2 9.0 0.1 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG Elf1 PF05129.8 gi|307594348|ref|YP_003900665.1| - 0.009 15.6 0.7 0.032 13.9 0.5 1.8 1 1 0 1 1 1 1 Transcription elongation factor Elf1 like Prok-RING_1 PF14446.1 gi|307594348|ref|YP_003900665.1| - 0.012 15.3 2.7 0.032 13.9 1.9 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.6 gi|307594348|ref|YP_003900665.1| - 0.018 14.6 0.1 0.025 14.2 0.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|307594348|ref|YP_003900665.1| - 0.021 14.0 3.4 0.17 11.1 2.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|307594348|ref|YP_003900665.1| - 0.026 14.5 0.2 0.92 9.5 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-CSL PF05207.8 gi|307594348|ref|YP_003900665.1| - 0.031 13.7 1.5 0.05 13.1 1.0 1.4 1 0 0 1 1 1 0 CSL zinc finger PHD PF00628.24 gi|307594348|ref|YP_003900665.1| - 0.031 13.9 0.9 0.043 13.5 0.6 1.2 1 0 0 1 1 1 0 PHD-finger ADK_lid PF05191.9 gi|307594348|ref|YP_003900665.1| - 0.032 13.8 0.4 0.92 9.2 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid CpXC PF14353.1 gi|307594348|ref|YP_003900665.1| - 0.062 13.2 1.1 0.76 9.7 0.0 2.0 1 1 1 2 2 2 0 CpXC protein DNA_RNApol_7kD PF03604.8 gi|307594348|ref|YP_003900665.1| - 0.072 12.5 1.9 0.27 10.7 1.3 1.9 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|307594348|ref|YP_003900665.1| - 0.082 13.2 2.2 3.1 8.1 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Cys_rich_KTR PF14205.1 gi|307594348|ref|YP_003900665.1| - 0.099 12.1 1.2 0.5 9.8 0.0 2.3 2 1 1 3 3 3 0 Cysteine-rich KTR zf-LITAF-like PF10601.4 gi|307594348|ref|YP_003900665.1| - 0.1 12.4 1.1 6.9 6.6 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|307594348|ref|YP_003900665.1| - 0.12 11.8 1.5 0.39 10.2 0.1 2.0 2 0 0 2 2 2 0 InsA N-terminal domain Sgf11 PF08209.6 gi|307594348|ref|YP_003900665.1| - 0.12 11.6 0.6 1.5 8.2 0.0 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-dskA_traR PF01258.12 gi|307594348|ref|YP_003900665.1| - 0.15 11.8 4.0 5.6 6.7 2.8 2.1 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-C2HC_2 PF13913.1 gi|307594348|ref|YP_003900665.1| - 0.16 11.6 3.8 0.24 11.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TFIIS_C PF01096.13 gi|307594348|ref|YP_003900665.1| - 0.18 11.4 1.1 1.6 8.3 0.1 2.0 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.1 gi|307594348|ref|YP_003900665.1| - 0.2 11.3 1.7 8.5 6.1 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|307594348|ref|YP_003900665.1| - 0.27 10.7 1.2 3.8 7.0 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain YhfH PF14149.1 gi|307594348|ref|YP_003900665.1| - 0.41 10.4 2.2 7.6 6.4 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.7 gi|307594348|ref|YP_003900665.1| - 0.63 9.3 3.5 50 3.3 0.2 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding zf-HIT PF04438.11 gi|307594348|ref|YP_003900665.1| - 0.65 9.6 2.9 9.2 6.0 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF3797 PF12677.2 gi|307594348|ref|YP_003900665.1| - 0.78 9.4 3.7 3.1 7.4 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) AA_kinase PF00696.23 gi|307594349|ref|YP_003900666.1| - 2.7e-37 128.6 0.7 3.1e-37 128.4 0.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family Aminotran_1_2 PF00155.16 gi|307594350|ref|YP_003900667.1| - 8.9e-59 199.2 0.0 1e-58 199.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|307594350|ref|YP_003900667.1| - 2.2e-09 36.1 0.0 1.7e-08 33.1 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|307594350|ref|YP_003900667.1| - 2e-05 23.8 0.0 3.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|307594350|ref|YP_003900667.1| - 2e-05 23.5 0.0 3.5e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V RNase_Zc3h12a PF11977.3 gi|307594350|ref|YP_003900667.1| - 0.037 13.8 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain CPSase_sm_chain PF00988.17 gi|307594351|ref|YP_003900668.1| - 1e-47 160.9 0.0 1.5e-47 160.3 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|307594351|ref|YP_003900668.1| - 2e-39 135.0 0.0 2.7e-39 134.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|307594351|ref|YP_003900668.1| - 3.6e-08 33.1 0.3 9.4e-06 25.2 0.1 2.5 1 1 1 2 2 2 1 Peptidase C26 CPSase_L_D2 PF02786.12 gi|307594352|ref|YP_003900669.1| - 1.3e-91 305.5 0.0 1.2e-60 204.3 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|307594352|ref|YP_003900669.1| - 1.7e-30 106.1 0.0 3.3e-14 53.0 0.0 2.6 3 0 0 3 3 3 2 ATP-grasp domain CPSase_L_chain PF00289.17 gi|307594352|ref|YP_003900669.1| - 1e-27 96.3 0.0 2.9e-16 59.5 0.0 2.8 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATPgrasp_Ter PF15632.1 gi|307594352|ref|YP_003900669.1| - 4.3e-22 78.2 0.0 3.2e-12 45.8 0.0 3.6 2 2 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|307594352|ref|YP_003900669.1| - 2.5e-21 75.6 0.0 7e-21 74.2 0.0 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.17 gi|307594352|ref|YP_003900669.1| - 8.5e-10 38.2 0.0 3e-06 26.6 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|307594352|ref|YP_003900669.1| - 2.9e-08 33.3 0.0 0.0032 16.9 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|307594352|ref|YP_003900669.1| - 9.1e-08 32.1 0.0 0.00036 20.4 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|307594352|ref|YP_003900669.1| - 3.6e-07 29.8 0.0 0.026 13.9 0.0 3.9 4 1 0 4 4 4 2 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|307594352|ref|YP_003900669.1| - 1.9e-05 24.2 0.0 0.013 15.0 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|307594352|ref|YP_003900669.1| - 0.00021 20.5 0.0 0.0028 16.9 0.0 2.4 2 0 0 2 2 2 1 ATP-grasp domain LysR_substrate PF03466.15 gi|307594352|ref|YP_003900669.1| - 0.038 13.0 0.0 0.15 11.1 0.0 1.9 3 0 0 3 3 3 0 LysR substrate binding domain Lyase_1 PF00206.15 gi|307594353|ref|YP_003900670.1| - 1.4e-31 109.8 0.0 2e-31 109.3 0.0 1.3 1 0 0 1 1 1 1 Lyase Meth_synt_2 PF01717.13 gi|307594356|ref|YP_003900673.1| - 2e-18 66.4 0.0 1.7e-13 50.2 0.0 2.4 2 1 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|307594356|ref|YP_003900673.1| - 0.02 14.1 0.0 0.13 11.4 0.0 2.1 2 0 0 2 2 2 0 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|307594356|ref|YP_003900673.1| - 0.13 11.1 0.0 12 4.6 0.0 2.2 2 0 0 2 2 2 0 Uroporphyrinogen decarboxylase (URO-D) Arginosuc_synth PF00764.14 gi|307594357|ref|YP_003900674.1| - 8.9e-146 485.8 0.0 1.1e-145 485.6 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|307594357|ref|YP_003900674.1| - 0.00092 18.7 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|307594357|ref|YP_003900674.1| - 0.0049 16.1 0.0 0.0081 15.4 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC DUF4165 PF13752.1 gi|307594357|ref|YP_003900674.1| - 0.056 13.2 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4165) tRNA_Me_trans PF03054.11 gi|307594357|ref|YP_003900674.1| - 0.18 10.3 0.0 0.23 10.0 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Chorismate_synt PF01264.16 gi|307594358|ref|YP_003900675.1| - 3.4e-127 423.6 0.0 3.9e-127 423.5 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Arch_ATPase PF01637.13 gi|307594359|ref|YP_003900676.1| - 6e-38 130.8 0.1 8.2e-38 130.4 0.1 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|307594359|ref|YP_003900676.1| - 8e-12 45.1 0.0 4.4e-06 26.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|307594359|ref|YP_003900676.1| - 7.4e-07 29.3 0.0 2.6e-06 27.5 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|307594359|ref|YP_003900676.1| - 2.4e-06 27.7 0.0 8.5e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|307594359|ref|YP_003900676.1| - 0.00014 20.5 0.0 0.00077 18.1 0.0 1.8 1 1 0 1 1 1 1 AAA-like domain AAA PF00004.24 gi|307594359|ref|YP_003900676.1| - 0.00046 20.4 0.0 0.0027 17.8 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|307594359|ref|YP_003900676.1| - 0.0039 16.1 0.0 0.0076 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DUF258 PF03193.11 gi|307594359|ref|YP_003900676.1| - 0.0061 15.7 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|307594359|ref|YP_003900676.1| - 0.027 13.9 0.0 1.8 7.8 0.0 2.3 1 1 0 2 2 2 0 AAA-like domain Miro PF08477.8 gi|307594359|ref|YP_003900676.1| - 0.031 14.7 0.0 0.061 13.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|307594359|ref|YP_003900676.1| - 0.058 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF651 PF04895.7 gi|307594359|ref|YP_003900676.1| - 0.088 12.4 0.0 0.25 10.9 0.0 1.8 1 0 0 1 1 1 0 Archaeal protein of unknown function (DUF651) CM_2 PF01817.16 gi|307594360|ref|YP_003900677.1| - 1.3e-16 60.4 0.3 2.3e-16 59.6 0.2 1.4 1 0 0 1 1 1 1 Chorismate mutase type II PDH PF02153.12 gi|307594360|ref|YP_003900677.1| - 1.9e-15 56.4 0.0 2.9e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|307594360|ref|YP_003900677.1| - 0.02 14.6 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|307594360|ref|YP_003900677.1| - 0.028 14.8 0.2 3.6 8.0 0.1 2.6 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|307594360|ref|YP_003900677.1| - 0.055 13.4 0.1 0.15 12.0 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain DAHP_synth_1 PF00793.15 gi|307594361|ref|YP_003900678.1| - 1.8e-77 259.6 0.0 2.6e-77 259.1 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|307594361|ref|YP_003900678.1| - 7.2e-07 28.5 0.0 4.7e-06 25.9 0.0 2.0 1 1 0 1 1 1 1 NeuB family PA PF02225.17 gi|307594361|ref|YP_003900678.1| - 0.012 15.2 1.3 0.96 9.1 0.0 2.9 3 0 0 3 3 3 0 PA domain DHQ_synthase PF01761.15 gi|307594362|ref|YP_003900679.1| - 3.1e-79 265.5 0.0 3.9e-79 265.2 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|307594362|ref|YP_003900679.1| - 4.2e-07 29.5 0.1 9.1e-07 28.4 0.1 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|307594362|ref|YP_003900679.1| - 0.0037 15.9 1.0 0.24 10.0 0.2 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Toxin_50 PF15530.1 gi|307594362|ref|YP_003900679.1| - 0.035 14.0 0.4 0.26 11.1 0.0 2.1 2 0 0 2 2 2 0 Putative toxin 50 Shikimate_dh_N PF08501.6 gi|307594363|ref|YP_003900680.1| - 1.1e-24 86.3 0.0 2.1e-24 85.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|307594363|ref|YP_003900680.1| - 1.8e-12 47.5 0.0 2.6e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|307594363|ref|YP_003900680.1| - 0.0016 17.4 0.0 0.0043 16.0 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|307594363|ref|YP_003900680.1| - 0.0077 16.6 0.1 0.093 13.1 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|307594363|ref|YP_003900680.1| - 0.022 13.8 0.0 0.031 13.4 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|307594363|ref|YP_003900680.1| - 0.13 11.2 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain DUF2338 PF10100.4 gi|307594363|ref|YP_003900680.1| - 0.19 10.0 0.0 0.28 9.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2338) DHquinase_I PF01487.10 gi|307594364|ref|YP_003900681.1| - 1.6e-11 44.2 0.0 5.5e-11 42.5 0.0 1.8 1 1 0 1 1 1 1 Type I 3-dehydroquinase GHMP_kinases_N PF00288.21 gi|307594365|ref|YP_003900682.1| - 8.1e-11 41.8 1.3 2.2e-10 40.4 0.9 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|307594365|ref|YP_003900682.1| - 0.0024 18.0 0.2 0.012 15.8 0.0 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal Transketolase_N PF00456.16 gi|307594366|ref|YP_003900683.1| - 7.8e-44 149.8 0.0 1.2e-43 149.1 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.19 gi|307594366|ref|YP_003900683.1| - 5.3e-39 133.5 0.0 1.2e-37 129.1 0.0 2.3 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|307594366|ref|YP_003900683.1| - 4e-19 68.7 0.0 6.7e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.1 gi|307594366|ref|YP_003900683.1| - 8.7e-10 37.9 0.0 3.3e-07 29.5 0.0 2.4 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|307594366|ref|YP_003900683.1| - 1.8e-08 34.0 2.6 1.8e-06 27.6 0.2 4.0 4 1 0 4 4 4 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.5 gi|307594366|ref|YP_003900683.1| - 6.9e-05 21.5 0.0 0.0001 20.9 0.0 1.2 1 0 0 1 1 1 1 XFP N-terminal domain E1_dh PF00676.15 gi|307594366|ref|YP_003900683.1| - 0.017 13.8 0.0 0.026 13.2 0.0 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component EPSP_synthase PF00275.15 gi|307594367|ref|YP_003900684.1| - 4.9e-71 239.3 0.0 5.7e-71 239.1 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) POR PF01558.13 gi|307594368|ref|YP_003900685.1| - 2.1e-12 47.2 0.0 2.5e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF4548 PF15081.1 gi|307594368|ref|YP_003900685.1| - 0.053 13.0 0.0 0.065 12.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4548) IGPS PF00218.16 gi|307594369|ref|YP_003900686.1| - 1e-50 172.1 0.0 1.2e-50 171.9 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|307594369|ref|YP_003900686.1| - 0.00082 18.7 0.3 0.0015 17.8 0.2 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|307594369|ref|YP_003900686.1| - 0.00094 18.2 0.0 0.0014 17.6 0.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ADH_zinc_N PF00107.21 gi|307594369|ref|YP_003900686.1| - 0.0061 16.1 0.1 0.016 14.7 0.1 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase NanE PF04131.9 gi|307594369|ref|YP_003900686.1| - 0.0097 14.8 0.0 0.017 14.1 0.0 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|307594369|ref|YP_003900686.1| - 0.035 12.9 0.7 0.056 12.2 0.5 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase PcrB PF01884.12 gi|307594369|ref|YP_003900686.1| - 0.045 12.9 0.1 0.067 12.4 0.1 1.2 1 0 0 1 1 1 0 PcrB family Trp_syntA PF00290.15 gi|307594370|ref|YP_003900687.1| - 3.7e-28 97.7 0.0 5e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|307594370|ref|YP_003900687.1| - 2.2e-07 30.3 0.0 3.9e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 PcrB family NanE PF04131.9 gi|307594370|ref|YP_003900687.1| - 0.00045 19.2 0.0 0.00094 18.2 0.0 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.20 gi|307594370|ref|YP_003900687.1| - 0.0006 18.8 0.2 0.00091 18.2 0.2 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain IGPS PF00218.16 gi|307594370|ref|YP_003900687.1| - 0.0029 16.6 0.0 0.0059 15.7 0.0 1.4 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|307594370|ref|YP_003900687.1| - 0.0052 16.0 0.0 0.015 14.5 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein PALP PF00291.20 gi|307594371|ref|YP_003900688.1| - 3.1e-45 154.7 0.0 3.6e-45 154.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glycos_transf_3 PF00591.16 gi|307594372|ref|YP_003900689.1| - 9.7e-84 280.7 0.0 1.4e-83 280.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|307594372|ref|YP_003900689.1| - 1.1e-15 56.9 0.9 2.3e-15 55.9 0.6 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.17 gi|307594373|ref|YP_003900690.1| - 2e-22 79.7 0.0 2.5e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Chorismate_bind PF00425.13 gi|307594374|ref|YP_003900691.1| - 1.6e-87 293.0 0.0 1.9e-87 292.8 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|307594374|ref|YP_003900691.1| - 1.7e-07 31.3 0.1 1.8e-06 27.9 0.1 2.4 1 1 0 1 1 1 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|307594375|ref|YP_003900692.1| - 1.1e-54 184.8 0.0 1.2e-54 184.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|307594375|ref|YP_003900692.1| - 8.2e-14 51.5 0.0 1.2e-13 51.0 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 PPDK_N PF01326.14 gi|307594376|ref|YP_003900693.1| - 2.8e-101 338.8 0.1 4.9e-101 338.0 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|307594376|ref|YP_003900693.1| - 2.5e-77 259.6 0.0 3.9e-77 259.0 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|307594376|ref|YP_003900693.1| - 9.1e-27 92.4 0.4 2.3e-26 91.1 0.3 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.8 gi|307594376|ref|YP_003900693.1| - 0.063 13.0 0.1 0.2 11.4 0.1 1.9 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal LysE PF01810.13 gi|307594377|ref|YP_003900694.1| - 9.1e-29 100.1 18.2 1e-28 99.9 12.6 1.0 1 0 0 1 1 1 1 LysE type translocator MaoC_dehydratas PF01575.14 gi|307594378|ref|YP_003900695.1| - 1.4e-25 89.0 0.0 8.2e-12 44.5 0.0 2.1 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|307594378|ref|YP_003900695.1| - 9.1e-09 35.1 0.0 1.2e-06 28.3 0.0 2.3 2 0 0 2 2 2 2 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|307594378|ref|YP_003900695.1| - 0.0083 16.2 0.6 3.2 7.9 0.0 3.2 3 0 0 3 3 3 2 Thioesterase superfamily Antitoxin-MazE PF04014.13 gi|307594379|ref|YP_003900696.1| - 3.3e-05 23.5 0.9 0.0063 16.2 0.1 2.8 3 1 0 3 3 3 2 Antidote-toxin recognition MazE Amidohydro_4 PF13147.1 gi|307594380|ref|YP_003900697.1| - 1.2e-13 51.7 0.1 2e-13 51.0 0.1 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|307594380|ref|YP_003900697.1| - 8.2e-12 45.4 0.0 1.8e-10 40.9 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|307594380|ref|YP_003900697.1| - 9.2e-10 38.2 0.0 2.2e-09 37.0 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|307594380|ref|YP_003900697.1| - 0.0086 15.3 0.0 0.12 11.5 0.0 2.2 2 1 0 2 2 2 1 Amidohydrolase family ABC_tran PF00005.22 gi|307594381|ref|YP_003900698.1| - 4.6e-23 82.0 0.0 6.3e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307594381|ref|YP_003900698.1| - 4e-12 46.6 0.0 9.3e-06 25.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|307594381|ref|YP_003900698.1| - 2.4e-07 30.1 0.1 0.014 14.5 0.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|307594381|ref|YP_003900698.1| - 0.0005 20.4 0.1 0.00075 19.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|307594381|ref|YP_003900698.1| - 0.00063 19.6 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|307594381|ref|YP_003900698.1| - 0.00065 19.1 0.0 0.0016 17.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|307594381|ref|YP_003900698.1| - 0.0019 17.3 0.0 1.4 7.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain MutS_V PF00488.16 gi|307594381|ref|YP_003900698.1| - 0.002 17.5 0.3 0.28 10.5 0.0 2.1 2 0 0 2 2 2 1 MutS domain V AAA_25 PF13481.1 gi|307594381|ref|YP_003900698.1| - 0.0024 17.3 0.1 0.0058 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|307594381|ref|YP_003900698.1| - 0.0042 16.5 0.0 0.011 15.2 0.0 1.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|307594381|ref|YP_003900698.1| - 0.0064 15.3 0.0 0.024 13.5 0.0 1.9 1 1 0 1 1 1 1 NB-ARC domain AAA_13 PF13166.1 gi|307594381|ref|YP_003900698.1| - 0.0074 14.8 0.0 0.46 8.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|307594381|ref|YP_003900698.1| - 0.013 15.6 0.0 0.28 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|307594381|ref|YP_003900698.1| - 0.033 14.0 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|307594381|ref|YP_003900698.1| - 0.051 13.2 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|307594381|ref|YP_003900698.1| - 0.054 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|307594381|ref|YP_003900698.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|307594381|ref|YP_003900698.1| - 0.069 12.3 0.1 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|307594381|ref|YP_003900698.1| - 0.076 13.8 0.0 0.14 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|307594381|ref|YP_003900698.1| - 0.08 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|307594381|ref|YP_003900698.1| - 0.13 12.2 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.1 gi|307594381|ref|YP_003900698.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|307594381|ref|YP_003900698.1| - 0.22 11.3 1.0 0.39 10.4 0.1 1.9 2 1 0 2 2 2 0 Part of AAA domain UPF0051 PF01458.12 gi|307594382|ref|YP_003900699.1| - 2.7e-57 193.8 0.0 3.5e-57 193.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|307594383|ref|YP_003900700.1| - 4.1e-59 199.8 0.0 5.3e-59 199.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|307594384|ref|YP_003900701.1| - 7.7e-34 117.1 0.0 1e-33 116.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Methyltransf_11 PF08241.7 gi|307594385|ref|YP_003900702.1| - 1.2e-12 48.1 0.0 3e-12 46.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|307594385|ref|YP_003900702.1| - 1.5e-09 37.7 0.0 2.7e-09 36.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|307594385|ref|YP_003900702.1| - 5.7e-06 25.6 0.0 7.9e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|307594385|ref|YP_003900702.1| - 2.1e-05 24.9 0.0 4.4e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307594385|ref|YP_003900702.1| - 8.9e-05 22.1 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|307594385|ref|YP_003900702.1| - 0.015 14.9 0.0 0.044 13.3 0.0 1.7 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|307594385|ref|YP_003900702.1| - 0.036 12.4 0.0 0.057 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.2 gi|307594385|ref|YP_003900702.1| - 0.038 14.5 0.0 0.081 13.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.21 gi|307594385|ref|YP_003900702.1| - 0.05 13.1 0.1 10 5.7 0.0 2.6 2 1 0 2 2 2 0 Zinc-binding dehydrogenase MerR_1 PF13411.1 gi|307594385|ref|YP_003900702.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein PhoU PF01895.14 gi|307594386|ref|YP_003900703.1| - 3e-20 72.4 8.7 2.3e-15 56.7 0.7 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|307594386|ref|YP_003900703.1| - 1.1e-07 31.3 0.1 4.1e-07 29.5 0.0 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE NTPase_1 PF03266.10 gi|307594387|ref|YP_003900704.1| - 2.3e-48 164.0 0.1 2.7e-48 163.8 0.0 1.0 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|307594387|ref|YP_003900704.1| - 1e-07 32.7 0.0 1.5e-07 32.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|307594387|ref|YP_003900704.1| - 1.9e-07 31.3 0.0 7e-07 29.5 0.0 2.0 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307594387|ref|YP_003900704.1| - 2.1e-06 27.9 0.1 2e-05 24.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307594387|ref|YP_003900704.1| - 2.8e-06 27.4 0.0 1.8e-05 24.8 0.0 2.0 2 1 0 3 3 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|307594387|ref|YP_003900704.1| - 3.7e-06 26.7 0.2 0.013 15.2 0.0 2.5 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|307594387|ref|YP_003900704.1| - 4.9e-06 26.5 0.1 3.2e-05 23.9 0.0 2.3 3 0 0 3 3 2 1 AAA domain MobB PF03205.9 gi|307594387|ref|YP_003900704.1| - 1e-05 25.2 0.2 2.2e-05 24.2 0.1 1.6 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|307594387|ref|YP_003900704.1| - 1.3e-05 25.5 0.3 2.3e-05 24.6 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|307594387|ref|YP_003900704.1| - 2.6e-05 23.8 0.4 0.00011 21.8 0.1 2.2 3 0 0 3 3 2 1 Part of AAA domain MMR_HSR1 PF01926.18 gi|307594387|ref|YP_003900704.1| - 3.9e-05 23.5 0.1 5.3e-05 23.1 0.1 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|307594387|ref|YP_003900704.1| - 6.7e-05 21.7 1.3 0.0001 21.1 0.4 1.6 1 1 1 2 2 2 1 ArgK protein AAA_30 PF13604.1 gi|307594387|ref|YP_003900704.1| - 7.2e-05 22.4 0.0 0.00056 19.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|307594387|ref|YP_003900704.1| - 8.6e-05 21.7 0.0 0.00014 21.0 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_10 PF12846.2 gi|307594387|ref|YP_003900704.1| - 0.00013 21.5 0.1 0.00013 21.5 0.1 1.4 1 1 0 1 1 1 1 AAA-like domain NACHT PF05729.7 gi|307594387|ref|YP_003900704.1| - 0.00014 21.5 0.0 0.00096 18.8 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.1 gi|307594387|ref|YP_003900704.1| - 0.0002 21.0 0.0 0.00046 19.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|307594387|ref|YP_003900704.1| - 0.00021 21.0 0.1 0.0032 17.1 0.1 2.2 1 1 0 1 1 1 1 Archaeal ATPase cobW PF02492.14 gi|307594387|ref|YP_003900704.1| - 0.00033 20.1 0.0 0.00052 19.4 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|307594387|ref|YP_003900704.1| - 0.00033 20.5 0.0 0.01 15.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|307594387|ref|YP_003900704.1| - 0.0007 19.1 0.0 0.0075 15.8 0.0 2.1 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase RuvB_N PF05496.7 gi|307594387|ref|YP_003900704.1| - 0.00077 18.5 0.5 0.039 12.9 0.0 2.7 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|307594387|ref|YP_003900704.1| - 0.0011 18.3 0.0 0.027 13.8 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|307594387|ref|YP_003900704.1| - 0.002 18.0 0.0 0.0038 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|307594387|ref|YP_003900704.1| - 0.0026 17.3 0.0 0.006 16.1 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|307594387|ref|YP_003900704.1| - 0.0037 17.7 0.0 0.0058 17.1 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein AAA_25 PF13481.1 gi|307594387|ref|YP_003900704.1| - 0.0053 16.1 0.3 0.026 13.9 0.1 2.2 1 1 1 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|307594387|ref|YP_003900704.1| - 0.0065 15.9 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain KTI12 PF08433.5 gi|307594387|ref|YP_003900704.1| - 0.011 14.9 0.1 0.028 13.6 0.0 1.7 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|307594387|ref|YP_003900704.1| - 0.012 14.7 0.1 0.022 13.9 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|307594387|ref|YP_003900704.1| - 0.013 14.9 0.1 0.071 12.6 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF2478 PF10649.4 gi|307594387|ref|YP_003900704.1| - 0.016 14.5 0.0 0.036 13.3 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2478) RNA_helicase PF00910.17 gi|307594387|ref|YP_003900704.1| - 0.017 15.3 0.0 0.037 14.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.16 gi|307594387|ref|YP_003900704.1| - 0.022 13.9 0.7 0.055 12.6 0.0 1.9 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI DAP3 PF10236.4 gi|307594387|ref|YP_003900704.1| - 0.028 13.3 0.0 0.049 12.5 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ABC_tran PF00005.22 gi|307594387|ref|YP_003900704.1| - 0.033 14.4 0.0 0.051 13.8 0.0 1.4 1 0 0 1 1 1 0 ABC transporter T2SE PF00437.15 gi|307594387|ref|YP_003900704.1| - 0.04 12.8 0.0 0.43 9.4 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein SRP54 PF00448.17 gi|307594387|ref|YP_003900704.1| - 0.054 12.9 0.1 0.17 11.3 0.0 1.8 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain ATP-synt_ab PF00006.20 gi|307594387|ref|YP_003900704.1| - 0.055 12.9 0.1 0.055 12.9 0.0 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain FeoB_N PF02421.13 gi|307594387|ref|YP_003900704.1| - 0.058 12.6 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_11 PF13086.1 gi|307594387|ref|YP_003900704.1| - 0.06 12.9 0.0 0.11 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|307594387|ref|YP_003900704.1| - 0.066 12.0 0.1 0.13 11.1 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Rad17 PF03215.10 gi|307594387|ref|YP_003900704.1| - 0.085 11.5 0.0 0.14 10.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein TrwB_AAD_bind PF10412.4 gi|307594387|ref|YP_003900704.1| - 0.1 11.2 0.0 0.15 10.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KAP_NTPase PF07693.9 gi|307594387|ref|YP_003900704.1| - 0.11 11.4 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Zeta_toxin PF06414.7 gi|307594387|ref|YP_003900704.1| - 0.13 11.3 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|307594387|ref|YP_003900704.1| - 0.13 12.5 0.1 0.58 10.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain Metallophos_2 PF12850.2 gi|307594388|ref|YP_003900705.1| - 1.6e-08 34.5 0.0 3.8e-07 30.0 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|307594388|ref|YP_003900705.1| - 2.7e-06 26.9 0.6 0.00042 19.7 0.0 2.3 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|307594388|ref|YP_003900705.1| - 2.9e-06 26.6 0.3 0.053 12.6 0.1 2.7 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Inositol_P PF00459.20 gi|307594389|ref|YP_003900706.1| - 3.9e-16 59.1 0.0 1.8e-15 56.9 0.0 1.7 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|307594389|ref|YP_003900706.1| - 0.00088 18.1 0.0 0.0016 17.3 0.0 1.4 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase TF_Zn_Ribbon PF08271.7 gi|307594390|ref|YP_003900707.1| - 0.00026 20.2 1.3 0.00037 19.7 0.9 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|307594390|ref|YP_003900707.1| - 0.0011 19.1 0.0 0.0014 18.9 0.0 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Ribosomal_S27 PF01599.14 gi|307594390|ref|YP_003900707.1| - 0.0035 17.1 0.8 0.0053 16.5 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.1 gi|307594390|ref|YP_003900707.1| - 0.014 15.0 0.4 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal Auto_anti-p27 PF06677.7 gi|307594390|ref|YP_003900707.1| - 0.016 14.9 0.6 0.024 14.3 0.4 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Elf1 PF05129.8 gi|307594390|ref|YP_003900707.1| - 0.017 14.7 0.1 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.6 gi|307594390|ref|YP_003900707.1| - 0.019 14.4 0.4 0.12 11.9 0.2 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Yippee-Mis18 PF03226.9 gi|307594390|ref|YP_003900707.1| - 0.032 14.2 0.1 0.11 12.5 0.0 1.7 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DNA_ligase_ZBD PF03119.11 gi|307594390|ref|YP_003900707.1| - 0.035 13.7 0.7 0.06 13.0 0.1 1.7 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|307594390|ref|YP_003900707.1| - 0.042 13.6 0.1 0.075 12.8 0.1 1.4 1 1 0 1 1 1 0 Double zinc ribbon IBR PF01485.16 gi|307594390|ref|YP_003900707.1| - 0.047 13.5 0.1 0.063 13.1 0.1 1.2 1 0 0 1 1 1 0 IBR domain zf-ribbon_3 PF13248.1 gi|307594390|ref|YP_003900707.1| - 0.058 12.6 1.8 0.15 11.2 1.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DUF2387 PF09526.5 gi|307594390|ref|YP_003900707.1| - 0.064 13.1 0.1 0.087 12.7 0.1 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF329 PF03884.9 gi|307594390|ref|YP_003900707.1| - 0.12 12.0 0.1 5.1 6.7 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) RNA_POL_M_15KD PF02150.11 gi|307594390|ref|YP_003900707.1| - 0.16 11.6 0.8 0.24 11.1 0.6 1.2 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|307594390|ref|YP_003900707.1| - 0.2 11.1 1.6 9.1 5.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|307594390|ref|YP_003900707.1| - 0.23 11.3 0.7 1.9 8.4 0.0 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-CSL PF05207.8 gi|307594390|ref|YP_003900707.1| - 0.27 10.7 2.0 2.1 7.9 1.7 1.9 1 1 1 2 2 2 0 CSL zinc finger Zn_Tnp_IS1595 PF12760.2 gi|307594390|ref|YP_003900707.1| - 0.31 10.8 2.7 7.2 6.5 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Mu-like_Com PF10122.4 gi|307594390|ref|YP_003900707.1| - 0.8 8.8 3.9 1.8 7.7 0.3 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com DNA_RNApol_7kD PF03604.8 gi|307594390|ref|YP_003900707.1| - 1.1 8.8 4.2 5.2 6.6 2.9 1.9 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit SWIM PF04434.12 gi|307594391|ref|YP_003900708.1| - 0.00071 19.0 0.1 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 SWIM zinc finger Sigma_reg_N PF13800.1 gi|307594392|ref|YP_003900709.1| - 0.099 12.6 1.5 0.11 12.4 1.1 1.1 1 0 0 1 1 1 0 Sigma factor regulator N-terminal BetaGal_dom3 PF13363.1 gi|307594393|ref|YP_003900710.1| - 0.06 12.7 0.0 0.092 12.1 0.0 1.4 1 0 0 1 1 1 0 Beta-galactosidase, domain 3 T_cell_tran_alt PF15128.1 gi|307594393|ref|YP_003900710.1| - 0.098 12.1 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 T-cell leukemia translocation-altered Methyltransf_11 PF08241.7 gi|307594395|ref|YP_003900712.1| - 2.3e-13 50.4 0.0 3.7e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|307594395|ref|YP_003900712.1| - 1.1e-12 48.0 0.0 1.4e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307594395|ref|YP_003900712.1| - 5.8e-09 36.3 0.0 1e-08 35.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307594395|ref|YP_003900712.1| - 5.2e-07 29.3 0.0 7.1e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307594395|ref|YP_003900712.1| - 1.6e-06 28.3 0.0 2.6e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|307594395|ref|YP_003900712.1| - 0.00021 21.3 0.0 0.00064 19.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|307594395|ref|YP_003900712.1| - 0.0009 18.4 0.0 0.0018 17.4 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|307594395|ref|YP_003900712.1| - 0.002 18.7 0.0 0.0048 17.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain DNAPolymera_Pol PF11590.3 gi|307594395|ref|YP_003900712.1| - 0.085 12.5 1.0 0.73 9.5 0.0 2.4 2 0 0 2 2 2 0 DNA polymerase catalytic subunit Pol AMP-binding PF00501.23 gi|307594396|ref|YP_003900713.1| - 3.7e-77 259.4 0.0 4.7e-77 259.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|307594396|ref|YP_003900713.1| - 1.7e-18 67.3 0.1 3.1e-18 66.5 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain APC2 PF08672.6 gi|307594396|ref|YP_003900713.1| - 0.069 13.4 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 Amidohydro_2 PF04909.9 gi|307594397|ref|YP_003900714.1| - 1.1e-24 87.4 0.0 3.2e-24 85.9 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase CN_hydrolase PF00795.17 gi|307594397|ref|YP_003900714.1| - 0.0019 17.5 0.0 0.038 13.3 0.0 2.1 1 1 0 2 2 2 1 Carbon-nitrogen hydrolase TatD_DNase PF01026.16 gi|307594397|ref|YP_003900714.1| - 0.11 11.6 0.0 0.32 10.1 0.0 1.7 1 1 0 1 1 1 0 TatD related DNase ECH PF00378.15 gi|307594398|ref|YP_003900715.1| - 2.7e-47 160.9 0.0 3.1e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|307594398|ref|YP_003900715.1| - 0.017 15.2 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region DUF35 PF01796.12 gi|307594399|ref|YP_003900716.1| - 1.1e-13 51.1 0.3 2.1e-13 50.2 0.2 1.5 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|307594399|ref|YP_003900716.1| - 1.1e-10 41.1 3.4 2.1e-10 40.2 2.4 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37e PF01907.14 gi|307594399|ref|YP_003900716.1| - 0.027 14.2 0.3 0.046 13.5 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e CpXC PF14353.1 gi|307594399|ref|YP_003900716.1| - 0.13 12.1 0.7 0.56 10.1 0.5 1.9 1 1 0 1 1 1 0 CpXC protein Thiolase_N PF00108.18 gi|307594400|ref|YP_003900717.1| - 4.7e-12 45.4 0.2 6.5e-09 35.1 0.0 2.3 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|307594400|ref|YP_003900717.1| - 3.7e-08 32.8 0.1 2.1e-06 27.1 0.0 2.8 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|307594400|ref|YP_003900717.1| - 4.5e-05 23.0 7.4 0.00048 19.6 1.7 2.9 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|307594400|ref|YP_003900717.1| - 0.0005 19.6 0.6 0.043 13.4 0.3 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|307594400|ref|YP_003900717.1| - 0.16 11.7 1.4 8.2 6.2 0.0 3.0 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain 3HCDH_N PF02737.13 gi|307594401|ref|YP_003900718.1| - 3e-71 238.8 1.0 4.2e-71 238.3 0.7 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|307594401|ref|YP_003900718.1| - 2.6e-68 229.8 0.0 4.3e-68 229.0 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|307594401|ref|YP_003900718.1| - 4.2e-49 164.9 0.2 1.2e-23 83.2 0.0 3.3 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|307594401|ref|YP_003900718.1| - 3.7e-07 29.9 0.3 7e-07 29.1 0.2 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|307594401|ref|YP_003900718.1| - 2e-06 27.7 0.1 4.2e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|307594401|ref|YP_003900718.1| - 2.9e-06 27.5 0.5 8.3e-06 26.1 0.3 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|307594401|ref|YP_003900718.1| - 8.5e-06 25.2 0.2 1.5e-05 24.5 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.9 gi|307594401|ref|YP_003900718.1| - 0.017 15.0 0.1 0.029 14.2 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|307594401|ref|YP_003900718.1| - 0.091 11.9 0.6 0.3 10.2 0.1 1.9 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|307594401|ref|YP_003900718.1| - 0.096 13.2 0.2 0.3 11.6 0.1 1.9 1 1 0 1 1 1 0 Methyltransferase domain AlaDh_PNT_C PF01262.16 gi|307594401|ref|YP_003900718.1| - 0.11 12.0 0.1 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain SCP2 PF02036.12 gi|307594402|ref|YP_003900719.1| - 1.2e-11 44.8 0.0 1.3e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.1 gi|307594402|ref|YP_003900719.1| - 2.2e-05 24.4 0.0 3.2e-05 23.8 0.0 1.3 1 1 0 1 1 1 1 Alkyl sulfatase C-terminal 2-Hacid_dh_C PF02826.14 gi|307594403|ref|YP_003900720.1| - 5.5e-54 182.0 0.0 1.2e-53 180.9 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|307594403|ref|YP_003900720.1| - 2.8e-28 98.0 0.0 3.7e-28 97.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|307594403|ref|YP_003900720.1| - 3.5e-05 23.9 0.0 0.2 11.8 0.0 2.2 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|307594403|ref|YP_003900720.1| - 0.014 15.2 0.1 0.073 12.9 0.0 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|307594403|ref|YP_003900720.1| - 0.18 12.2 1.0 21 5.6 0.0 2.5 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TPP_enzyme_N PF02776.13 gi|307594404|ref|YP_003900721.1| - 8.4e-57 191.4 0.6 4.3e-55 185.8 0.0 2.9 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|307594404|ref|YP_003900721.1| - 2.9e-39 133.9 0.0 1.4e-38 131.7 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|307594404|ref|YP_003900721.1| - 4.6e-35 120.4 1.0 3.1e-34 117.7 0.0 2.7 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TP_methylase PF00590.15 gi|307594404|ref|YP_003900721.1| - 0.0022 17.7 2.0 0.99 9.0 0.0 2.7 3 0 0 3 3 3 2 Tetrapyrrole (Corrin/Porphyrin) Methylases POR_N PF01855.14 gi|307594404|ref|YP_003900721.1| - 0.018 14.5 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ADH_N PF08240.7 gi|307594405|ref|YP_003900722.1| - 1.4e-30 105.2 0.0 2.2e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|307594405|ref|YP_003900722.1| - 9.4e-28 96.3 0.0 3.6e-27 94.4 0.0 1.9 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|307594405|ref|YP_003900722.1| - 2.3e-07 31.7 0.0 6.5e-07 30.2 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|307594405|ref|YP_003900722.1| - 9.8e-05 21.9 0.1 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|307594405|ref|YP_003900722.1| - 0.019 14.9 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|307594405|ref|YP_003900722.1| - 0.071 12.2 0.1 0.12 11.5 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SCP2 PF02036.12 gi|307594406|ref|YP_003900723.1| - 0.00014 22.1 0.1 0.00054 20.2 0.0 1.9 1 1 0 2 2 2 1 SCP-2 sterol transfer family Acyl-CoA_dh_1 PF00441.19 gi|307594407|ref|YP_003900724.1| - 5.6e-27 94.6 0.1 8.8e-27 94.0 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|307594407|ref|YP_003900724.1| - 5e-15 56.0 0.0 9.6e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|307594407|ref|YP_003900724.1| - 5.3e-14 52.6 0.0 9.5e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|307594407|ref|YP_003900724.1| - 2.5e-08 33.2 0.0 6.6e-08 31.9 0.0 1.8 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Rieske PF00355.21 gi|307594407|ref|YP_003900724.1| - 0.098 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain ADC PF06314.6 gi|307594408|ref|YP_003900725.1| - 1.3e-41 142.5 0.1 1.6e-41 142.2 0.1 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Gal_mutarotas_2 PF13802.1 gi|307594409|ref|YP_003900726.1| - 1.6 8.6 3.9 7.9 6.4 0.3 2.6 2 1 1 3 3 3 0 Galactose mutarotase-like DUF4418 PF14387.1 gi|307594411|ref|YP_003900728.1| - 0.0066 16.1 2.3 0.0066 16.1 1.6 3.4 2 1 1 3 3 3 1 Domain of unknown function (DUF4418) DAO PF01266.19 gi|307594412|ref|YP_003900729.1| - 2.1e-49 168.3 0.1 2.8e-49 167.9 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.10 gi|307594412|ref|YP_003900729.1| - 3e-07 30.3 1.5 5.2e-07 29.6 1.1 1.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_3 PF01494.14 gi|307594412|ref|YP_003900729.1| - 7.1e-07 28.6 0.1 0.0002 20.5 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|307594412|ref|YP_003900729.1| - 5.4e-06 25.6 0.1 1.3e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|307594412|ref|YP_003900729.1| - 1.1e-05 25.3 0.4 2.9e-05 24.0 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|307594412|ref|YP_003900729.1| - 2.2e-05 24.6 0.1 0.0016 18.5 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|307594412|ref|YP_003900729.1| - 3.4e-05 22.5 0.1 0.0021 16.6 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|307594412|ref|YP_003900729.1| - 0.00022 20.2 0.0 0.0063 15.4 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|307594412|ref|YP_003900729.1| - 0.00064 19.6 0.1 0.0012 18.7 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|307594412|ref|YP_003900729.1| - 0.0016 17.3 1.0 0.0023 16.8 0.2 1.9 2 1 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|307594412|ref|YP_003900729.1| - 0.004 17.5 1.0 0.088 13.2 0.4 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|307594412|ref|YP_003900729.1| - 0.0044 16.4 0.1 0.0069 15.7 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1145 PF06611.7 gi|307594412|ref|YP_003900729.1| - 0.037 13.6 0.0 0.08 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1145) 3HCDH_N PF02737.13 gi|307594412|ref|YP_003900729.1| - 0.042 13.4 0.1 0.078 12.6 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|307594412|ref|YP_003900729.1| - 0.051 13.0 0.3 0.097 12.1 0.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.1 gi|307594413|ref|YP_003900730.1| - 3.7e-08 33.2 0.4 2.7e-07 30.5 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|307594413|ref|YP_003900730.1| - 5.4e-08 33.1 0.1 0.0037 17.3 0.1 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|307594413|ref|YP_003900730.1| - 1.6e-07 31.6 1.1 9.2e-05 22.7 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|307594413|ref|YP_003900730.1| - 2.9e-05 23.2 0.1 9.8e-05 21.5 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|307594413|ref|YP_003900730.1| - 0.00011 22.1 0.9 0.0019 18.0 0.5 2.3 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|307594413|ref|YP_003900730.1| - 0.00098 18.0 0.6 0.0016 17.3 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|307594413|ref|YP_003900730.1| - 0.0047 17.1 0.3 0.0098 16.1 0.0 1.6 2 0 0 2 2 1 1 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|307594413|ref|YP_003900730.1| - 0.014 14.2 0.1 0.022 13.6 0.0 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein DAO PF01266.19 gi|307594413|ref|YP_003900730.1| - 0.017 14.0 2.3 0.028 13.3 0.2 2.1 3 0 0 3 3 3 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|307594413|ref|YP_003900730.1| - 0.039 12.8 0.1 0.055 12.3 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Glyco_trans_4_4 PF13579.1 gi|307594413|ref|YP_003900730.1| - 0.049 13.7 0.1 0.2 11.7 0.0 2.1 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|307594413|ref|YP_003900730.1| - 0.06 13.0 0.2 0.15 11.7 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Amino_oxidase PF01593.19 gi|307594413|ref|YP_003900730.1| - 0.13 11.3 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase FGGY_C PF02782.11 gi|307594414|ref|YP_003900731.1| - 4.4e-26 91.7 0.0 2.7e-25 89.1 0.0 2.0 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.16 gi|307594414|ref|YP_003900731.1| - 5.4e-24 84.8 0.0 7.6e-24 84.3 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FAD_binding_4 PF01565.18 gi|307594415|ref|YP_003900732.1| - 7.6e-38 129.1 0.4 1.2e-37 128.4 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.14 gi|307594415|ref|YP_003900732.1| - 4.3e-34 117.9 0.0 5.6e-34 117.5 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain Rieske PF00355.21 gi|307594416|ref|YP_003900733.1| - 1e-12 47.4 0.1 1.2e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|307594416|ref|YP_003900733.1| - 1.6e-06 27.7 0.0 2.5e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain Asp_protease_2 PF13650.1 gi|307594417|ref|YP_003900734.1| - 3.3e-07 30.7 0.0 3.9e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|307594417|ref|YP_003900734.1| - 3.6e-05 23.6 0.0 4.2e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|307594417|ref|YP_003900734.1| - 0.00013 21.6 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Radical_SAM PF04055.16 gi|307594418|ref|YP_003900735.1| - 2.7e-14 53.7 0.0 4.2e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|307594419|ref|YP_003900736.1| - 7.1e-11 42.5 0.1 1.1e-10 41.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily VitK2_biosynth PF02621.9 gi|307594420|ref|YP_003900737.1| - 1.1e-31 109.9 0.0 1.3e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 Menaquinone biosynthesis VitK2_biosynth PF02621.9 gi|307594421|ref|YP_003900738.1| - 1.3e-72 244.0 0.0 1.4e-72 243.8 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis YhfZ_C PF14503.1 gi|307594421|ref|YP_003900738.1| - 0.11 11.7 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 YhfZ C-terminal domain CoA_transf_3 PF02515.12 gi|307594422|ref|YP_003900739.1| - 7.2e-48 162.3 0.0 1e-47 161.8 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III 4HBT PF03061.17 gi|307594423|ref|YP_003900740.1| - 4e-15 55.7 1.0 6.5e-15 55.0 0.7 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|307594423|ref|YP_003900740.1| - 7.2e-09 35.7 0.0 9.4e-09 35.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Orn_Arg_deC_N PF02784.11 gi|307594424|ref|YP_003900741.1| - 5.9e-41 140.3 0.0 7.9e-41 139.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|307594424|ref|YP_003900741.1| - 1.5e-22 79.5 0.0 2.5e-22 78.7 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AF-4 PF05110.8 gi|307594424|ref|YP_003900741.1| - 0.34 8.7 0.0 0.42 8.4 0.0 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein Ribosomal_L5_C PF00673.16 gi|307594425|ref|YP_003900742.1| - 7.3e-21 73.7 0.0 1.4e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|307594425|ref|YP_003900742.1| - 5.9e-16 57.9 0.1 8.9e-16 57.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L5 Sugar_tr PF00083.19 gi|307594426|ref|YP_003900743.1| - 3e-48 164.5 26.1 3.7e-48 164.2 18.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|307594426|ref|YP_003900743.1| - 1.7e-26 92.8 34.4 1.7e-26 92.8 23.8 2.0 1 1 0 2 2 2 1 Major Facilitator Superfamily DUF1129 PF06570.6 gi|307594426|ref|YP_003900743.1| - 0.011 15.0 0.5 0.011 15.0 0.3 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF1129) MFS_1_like PF12832.2 gi|307594426|ref|YP_003900743.1| - 0.033 13.9 0.1 0.033 13.9 0.1 4.0 2 2 1 4 4 4 0 MFS_1 like family DUF86 PF01934.12 gi|307594427|ref|YP_003900744.1| - 1.9e-16 59.8 1.2 2.2e-16 59.5 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Ribosomal_L1 PF00687.16 gi|307594427|ref|YP_003900744.1| - 0.14 11.4 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L1p/L10e family NTP_transf_2 PF01909.18 gi|307594428|ref|YP_003900745.1| - 0.00017 21.8 2.8 0.00026 21.2 1.9 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Asp_protease_2 PF13650.1 gi|307594429|ref|YP_003900746.1| - 5.2e-08 33.2 0.2 6.9e-08 32.8 0.2 1.3 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|307594429|ref|YP_003900746.1| - 2.1e-05 24.2 0.1 3.6e-05 23.5 0.1 1.5 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|307594429|ref|YP_003900746.1| - 2.8e-05 23.9 0.1 3.3e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease DUF257 PF03192.8 gi|307594429|ref|YP_003900746.1| - 0.027 13.7 0.1 0.035 13.4 0.1 1.1 1 0 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 Spuma_A9PTase PF03539.9 gi|307594429|ref|YP_003900746.1| - 0.031 14.2 0.0 0.036 13.9 0.0 1.1 1 0 0 1 1 1 0 Spumavirus aspartic protease (A9) Asp_protease PF09668.5 gi|307594429|ref|YP_003900746.1| - 0.039 13.5 0.1 0.065 12.8 0.1 1.6 1 1 0 1 1 1 0 Aspartyl protease DUF4559 PF15112.1 gi|307594430|ref|YP_003900747.1| - 0.00021 20.5 4.6 0.00028 20.1 3.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) Spc7 PF08317.6 gi|307594430|ref|YP_003900747.1| - 0.00026 19.7 10.9 0.00037 19.2 7.6 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein AAA_13 PF13166.1 gi|307594430|ref|YP_003900747.1| - 0.0028 16.1 3.1 0.0036 15.8 2.1 1.1 1 0 0 1 1 1 1 AAA domain MCPsignal PF00015.16 gi|307594430|ref|YP_003900747.1| - 0.012 15.1 0.2 0.07 12.6 0.0 2.0 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Baculo_PEP_C PF04513.7 gi|307594430|ref|YP_003900747.1| - 0.016 15.0 2.7 1.9 8.3 1.9 2.3 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus RNA_pol_Rpb1_1 PF04997.7 gi|307594430|ref|YP_003900747.1| - 0.016 14.5 1.4 0.027 13.7 0.2 1.8 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 1 BLOC1_2 PF10046.4 gi|307594430|ref|YP_003900747.1| - 0.017 15.2 7.0 0.38 10.9 1.9 2.7 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ING PF12998.2 gi|307594430|ref|YP_003900747.1| - 0.024 14.8 4.5 0.024 14.8 3.1 2.1 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding NPV_P10 PF05531.7 gi|307594430|ref|YP_003900747.1| - 0.032 14.4 2.8 0.36 11.1 0.4 2.5 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|307594430|ref|YP_003900747.1| - 0.034 13.3 1.9 0.16 11.0 0.2 2.0 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Occludin_ELL PF07303.8 gi|307594430|ref|YP_003900747.1| - 0.051 14.3 5.9 3.4 8.4 0.2 2.4 1 1 0 2 2 2 0 Occludin homology domain V_ATPase_I PF01496.14 gi|307594430|ref|YP_003900747.1| - 0.074 10.9 9.3 0.21 9.4 0.4 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Atg14 PF10186.4 gi|307594430|ref|YP_003900747.1| - 0.081 11.8 7.8 0.12 11.2 5.4 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 WXG100 PF06013.7 gi|307594430|ref|YP_003900747.1| - 0.093 12.7 3.7 9 6.3 0.1 3.6 1 1 2 3 3 3 0 Proteins of 100 residues with WXG CCDC155 PF14662.1 gi|307594430|ref|YP_003900747.1| - 0.1 12.1 13.4 2 7.9 10.6 2.2 2 1 0 2 2 2 0 Coiled-coil region of CCDC155 ARGLU PF15346.1 gi|307594430|ref|YP_003900747.1| - 0.11 12.3 8.7 0.18 11.5 6.1 1.5 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 DASH_Spc34 PF08657.5 gi|307594430|ref|YP_003900747.1| - 0.16 11.6 6.7 1.6 8.3 0.2 2.2 2 0 0 2 2 2 0 DASH complex subunit Spc34 GOLGA2L5 PF15070.1 gi|307594430|ref|YP_003900747.1| - 0.18 10.2 12.4 0.24 9.8 8.6 1.1 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 MSA-2c PF12238.3 gi|307594430|ref|YP_003900747.1| - 0.19 11.4 0.5 2.4 7.8 0.0 2.0 2 0 0 2 2 2 0 Merozoite surface antigen 2c DUF948 PF06103.6 gi|307594430|ref|YP_003900747.1| - 0.19 11.6 4.5 0.88 9.4 0.6 2.8 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) FH2 PF02181.18 gi|307594430|ref|YP_003900747.1| - 0.2 10.5 5.0 1.3 7.8 0.5 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain T2SF PF00482.18 gi|307594430|ref|YP_003900747.1| - 0.21 11.5 1.6 0.3 10.9 0.5 1.7 2 0 0 2 2 1 0 Type II secretion system (T2SS), protein F DUF1664 PF07889.7 gi|307594430|ref|YP_003900747.1| - 0.25 11.1 4.7 0.4 10.4 0.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) MutS_III PF05192.13 gi|307594430|ref|YP_003900747.1| - 0.25 11.1 5.8 0.42 10.3 4.0 1.4 1 0 0 1 1 1 0 MutS domain III COG2 PF06148.6 gi|307594430|ref|YP_003900747.1| - 0.26 11.1 6.7 4.2 7.2 0.2 2.4 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DASH_Duo1 PF08651.5 gi|307594430|ref|YP_003900747.1| - 0.28 10.7 5.3 2 8.0 0.3 2.6 1 1 2 3 3 3 0 DASH complex subunit Duo1 APG6 PF04111.7 gi|307594430|ref|YP_003900747.1| - 0.31 10.0 10.6 0.5 9.3 7.3 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Nup88 PF10168.4 gi|307594430|ref|YP_003900747.1| - 0.33 8.7 9.9 0.46 8.2 6.8 1.1 1 0 0 1 1 1 0 Nuclear pore component Sec34 PF04136.10 gi|307594430|ref|YP_003900747.1| - 0.34 10.6 6.1 3.6 7.2 1.1 2.3 1 1 1 2 2 2 0 Sec34-like family IFT57 PF10498.4 gi|307594430|ref|YP_003900747.1| - 0.34 9.6 9.4 0.85 8.2 6.0 1.8 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 TBCA PF02970.11 gi|307594430|ref|YP_003900747.1| - 0.41 10.7 6.3 2.3 8.3 1.1 2.5 1 1 1 2 2 2 0 Tubulin binding cofactor A Mnd1 PF03962.10 gi|307594430|ref|YP_003900747.1| - 0.43 10.2 9.6 14 5.2 6.7 2.1 1 1 0 1 1 1 0 Mnd1 family DUF812 PF05667.6 gi|307594430|ref|YP_003900747.1| - 0.44 9.0 7.2 0.6 8.5 5.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Syntaxin PF00804.20 gi|307594430|ref|YP_003900747.1| - 0.47 10.6 8.1 10 6.3 5.6 2.5 1 1 0 1 1 1 0 Syntaxin Prefoldin_2 PF01920.15 gi|307594430|ref|YP_003900747.1| - 0.55 10.0 10.9 1.1 9.0 0.3 2.7 1 1 1 2 2 2 0 Prefoldin subunit DUF342 PF03961.8 gi|307594430|ref|YP_003900747.1| - 0.59 8.4 7.8 1.3 7.3 2.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) FCH PF00611.18 gi|307594430|ref|YP_003900747.1| - 0.62 10.2 7.7 2.1 8.5 2.4 2.2 1 1 1 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain FlgN PF05130.7 gi|307594430|ref|YP_003900747.1| - 0.74 10.0 16.5 0.56 10.4 9.4 2.0 1 1 1 2 2 2 0 FlgN protein Orbi_VP5 PF00901.12 gi|307594430|ref|YP_003900747.1| - 0.75 7.9 8.3 0.99 7.5 5.8 1.1 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP5 CENP-K PF11802.3 gi|307594430|ref|YP_003900747.1| - 0.87 8.7 8.0 1.5 8.0 5.6 1.3 1 0 0 1 1 1 0 Centromere-associated protein K DUF4298 PF14131.1 gi|307594430|ref|YP_003900747.1| - 1.2 9.0 4.2 45 3.9 0.8 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4298) DUF3552 PF12072.3 gi|307594430|ref|YP_003900747.1| - 1.2 8.3 16.2 1.9 7.6 4.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) FUSC PF04632.7 gi|307594430|ref|YP_003900747.1| - 1.2 7.4 4.7 1.5 7.1 3.3 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family TBPIP PF07106.8 gi|307594430|ref|YP_003900747.1| - 1.2 8.6 9.4 1.7 8.1 1.5 2.4 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF745 PF05335.8 gi|307594430|ref|YP_003900747.1| - 1.4 8.4 3.4 3.2 7.2 1.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF745) DUF16 PF01519.11 gi|307594430|ref|YP_003900747.1| - 1.6 8.9 6.6 46 4.2 4.6 2.2 1 1 0 1 1 1 0 Protein of unknown function DUF16 TPR_MLP1_2 PF07926.7 gi|307594430|ref|YP_003900747.1| - 1.9 8.2 12.7 2.6 7.7 3.1 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.17 gi|307594430|ref|YP_003900747.1| - 3.6 7.6 8.2 7.3 6.6 3.1 2.4 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain IncA PF04156.9 gi|307594430|ref|YP_003900747.1| - 4.1 6.9 17.4 15 5.1 11.8 1.8 1 1 1 2 2 2 0 IncA protein TMPIT PF07851.8 gi|307594430|ref|YP_003900747.1| - 4.5 6.2 6.5 7.4 5.5 3.5 1.8 1 1 1 2 2 2 0 TMPIT-like protein DUF2450 PF10475.4 gi|307594430|ref|YP_003900747.1| - 4.8 5.9 8.5 11 4.8 5.9 1.5 1 1 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) Tropomyosin_1 PF12718.2 gi|307594430|ref|YP_003900747.1| - 5.3 6.8 14.2 41 4.0 9.8 2.0 1 1 0 1 1 1 0 Tropomyosin like Syntaxin-6_N PF09177.6 gi|307594430|ref|YP_003900747.1| - 5.9 7.3 6.5 14 6.2 0.5 2.5 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Jnk-SapK_ap_N PF09744.4 gi|307594430|ref|YP_003900747.1| - 6.6 6.7 16.4 0.72 9.8 6.2 2.6 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 DUF4446 PF14584.1 gi|307594430|ref|YP_003900747.1| - 7.8 6.3 6.6 4 7.2 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF4200 PF13863.1 gi|307594430|ref|YP_003900747.1| - 8.6 6.3 11.9 20 5.1 5.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) V-SNARE_C PF12352.3 gi|307594430|ref|YP_003900747.1| - 9.1 6.4 10.3 3.1 7.9 2.1 3.0 1 1 2 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus tRNA_SAD PF07973.9 gi|307594435|ref|YP_003900752.1| - 3.6e-11 42.7 0.1 6.4e-11 41.9 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|307594435|ref|YP_003900752.1| - 3.4e-10 38.8 0.0 4.6e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) Peptidase_M20 PF01546.23 gi|307594436|ref|YP_003900753.1| - 2e-35 122.0 2.6 3.7e-35 121.1 1.8 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|307594436|ref|YP_003900753.1| - 5.1e-20 71.2 0.0 9.5e-20 70.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|307594436|ref|YP_003900753.1| - 0.16 11.6 0.0 0.36 10.5 0.0 1.6 2 0 0 2 2 2 0 Peptidase family M28 DUF3311 PF11755.3 gi|307594437|ref|YP_003900754.1| - 5.4e-16 57.8 11.5 6e-16 57.7 8.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF2975 PF11188.3 gi|307594437|ref|YP_003900754.1| - 0.036 13.7 0.4 0.045 13.4 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4212 PF13937.1 gi|307594437|ref|YP_003900754.1| - 0.55 10.2 4.9 0.76 9.8 3.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) Scs3p PF10261.4 gi|307594437|ref|YP_003900754.1| - 2.7 6.9 5.2 12 4.8 2.4 1.9 2 0 0 2 2 2 0 Inositol phospholipid synthesis and fat-storage-inducing TM SSF PF00474.12 gi|307594438|ref|YP_003900755.1| - 4.6e-12 45.2 37.6 1.2e-10 40.6 26.0 2.7 1 1 0 1 1 1 1 Sodium:solute symporter family Aminotran_1_2 PF00155.16 gi|307594439|ref|YP_003900756.1| - 6.7e-28 97.6 0.0 8.9e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II PadR PF03551.9 gi|307594440|ref|YP_003900757.1| - 3.2e-18 65.2 0.0 4.9e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.1 gi|307594440|ref|YP_003900757.1| - 0.0001 21.9 0.0 0.00061 19.4 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|307594440|ref|YP_003900757.1| - 0.00017 21.1 0.1 0.038 13.7 0.0 2.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_42 PF06224.7 gi|307594440|ref|YP_003900757.1| - 0.00056 19.3 0.0 0.00061 19.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.7 gi|307594440|ref|YP_003900757.1| - 0.00099 17.3 0.0 0.0012 17.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF3854 PF12965.2 gi|307594440|ref|YP_003900757.1| - 0.0047 16.5 0.0 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3854) HTH_11 PF08279.7 gi|307594440|ref|YP_003900757.1| - 0.014 15.0 0.1 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_27 PF13463.1 gi|307594440|ref|YP_003900757.1| - 0.029 14.6 0.2 0.56 10.5 0.0 2.7 2 1 0 2 2 2 0 Winged helix DNA-binding domain FUR PF01475.14 gi|307594440|ref|YP_003900757.1| - 0.1 12.5 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family AAA_21 PF13304.1 gi|307594441|ref|YP_003900758.1| - 0.00074 19.5 0.0 0.0026 17.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|307594441|ref|YP_003900758.1| - 0.001 19.3 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|307594441|ref|YP_003900758.1| - 0.0011 19.3 0.0 0.0017 18.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|307594441|ref|YP_003900758.1| - 0.0073 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|307594441|ref|YP_003900758.1| - 0.017 15.2 0.0 0.37 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF2813 PF11398.3 gi|307594441|ref|YP_003900758.1| - 0.041 12.9 0.3 0.06 12.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|307594441|ref|YP_003900758.1| - 0.065 12.4 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|307594441|ref|YP_003900758.1| - 0.068 12.7 0.1 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|307594441|ref|YP_003900758.1| - 0.069 13.1 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.14 gi|307594441|ref|YP_003900758.1| - 0.078 12.4 0.1 0.17 11.2 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|307594441|ref|YP_003900758.1| - 0.11 11.6 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Aminotran_5 PF00266.14 gi|307594442|ref|YP_003900759.1| - 2.5e-25 89.0 0.0 3.2e-25 88.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|307594442|ref|YP_003900759.1| - 4.4e-06 25.2 0.0 7.8e-06 24.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Sdh_cyt PF01127.17 gi|307594443|ref|YP_003900760.1| - 7.4e-06 25.8 10.6 1e-05 25.3 7.4 1.3 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sex_peptide PF08138.6 gi|307594443|ref|YP_003900760.1| - 0.28 11.0 1.5 4.6 7.1 0.0 2.4 2 0 0 2 2 2 0 Sex peptide (SP) family DUF3185 PF11381.3 gi|307594443|ref|YP_003900760.1| - 1.4 8.7 9.6 5.4 6.8 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) YtpI PF14007.1 gi|307594443|ref|YP_003900760.1| - 3.4 7.6 6.8 3.7 7.5 1.9 2.3 2 1 0 2 2 2 0 YtpI-like protein Imm10 PF15562.1 gi|307594443|ref|YP_003900760.1| - 4.9 6.9 14.9 1.8 8.3 0.5 3.2 2 1 1 3 3 3 0 Immunity protein 10 Sdh_cyt PF01127.17 gi|307594444|ref|YP_003900761.1| - 2.2e-22 79.1 4.5 2.2e-22 79.1 3.1 1.3 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4231 PF14015.1 gi|307594444|ref|YP_003900761.1| - 0.68 9.9 5.6 2.5 8.1 3.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Fer2_3 PF13085.1 gi|307594445|ref|YP_003900762.1| - 3.2e-33 113.8 0.0 7e-33 112.7 0.0 1.6 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|307594445|ref|YP_003900762.1| - 2.5e-11 43.4 1.4 2.5e-11 43.4 1.0 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307594445|ref|YP_003900762.1| - 3.8e-09 36.8 1.1 7.7e-06 26.2 0.0 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307594445|ref|YP_003900762.1| - 4.6e-09 36.4 0.9 4.6e-09 36.4 0.6 1.9 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307594445|ref|YP_003900762.1| - 3.3e-08 33.6 1.6 3.3e-08 33.6 1.1 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307594445|ref|YP_003900762.1| - 9.4e-07 29.1 0.4 9.4e-07 29.1 0.3 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307594445|ref|YP_003900762.1| - 2.5e-06 27.1 2.5 2.5e-06 27.1 1.7 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307594445|ref|YP_003900762.1| - 0.00013 21.4 1.1 0.00013 21.4 0.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer2 PF00111.22 gi|307594445|ref|YP_003900762.1| - 0.0005 19.7 0.0 0.0005 19.7 0.0 2.0 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_21 PF14697.1 gi|307594445|ref|YP_003900762.1| - 0.00089 19.0 2.0 0.035 13.9 0.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307594445|ref|YP_003900762.1| - 0.00094 19.5 0.6 0.00094 19.5 0.4 2.7 3 0 0 3 3 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|307594445|ref|YP_003900762.1| - 0.00098 19.8 2.9 0.00098 19.8 2.0 2.4 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|307594445|ref|YP_003900762.1| - 0.0019 18.0 1.6 0.0019 18.0 1.1 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|307594445|ref|YP_003900762.1| - 0.0041 17.3 1.7 0.0041 17.3 1.2 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|307594445|ref|YP_003900762.1| - 0.0069 16.2 2.1 0.0069 16.2 1.5 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|307594445|ref|YP_003900762.1| - 0.12 12.9 0.1 0.12 12.9 0.1 2.5 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|307594445|ref|YP_003900762.1| - 5.9 7.7 21.4 0.74 10.5 2.5 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain HTH_3 PF01381.17 gi|307594446|ref|YP_003900763.1| - 7.5e-10 38.5 0.0 1.6e-09 37.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|307594446|ref|YP_003900763.1| - 8.6e-08 32.1 0.0 2.4e-07 30.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|307594446|ref|YP_003900763.1| - 9.7e-08 32.1 0.0 2.3e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|307594446|ref|YP_003900763.1| - 0.0018 17.6 1.1 0.29 10.6 0.0 2.8 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|307594446|ref|YP_003900763.1| - 0.0034 16.8 0.0 0.0089 15.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|307594446|ref|YP_003900763.1| - 0.02 14.5 0.1 0.069 12.8 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|307594446|ref|YP_003900763.1| - 0.042 13.2 0.2 0.21 10.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_37 PF13744.1 gi|307594446|ref|YP_003900763.1| - 0.043 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_18 PF13238.1 gi|307594447|ref|YP_003900764.1| - 4.8e-14 52.7 0.0 6.6e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|307594447|ref|YP_003900764.1| - 9.4e-12 45.8 0.1 1.8e-11 44.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|307594447|ref|YP_003900764.1| - 1.4e-08 34.6 0.0 2.4e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain SKI PF01202.17 gi|307594447|ref|YP_003900764.1| - 5.6e-07 29.5 0.0 7.3e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Shikimate kinase KTI12 PF08433.5 gi|307594447|ref|YP_003900764.1| - 3.7e-05 23.0 0.0 4.4e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Cytidylate_kin2 PF13189.1 gi|307594447|ref|YP_003900764.1| - 8.3e-05 22.5 0.1 0.0015 18.4 0.0 2.2 1 1 1 2 2 2 1 Cytidylate kinase-like family ADK PF00406.17 gi|307594447|ref|YP_003900764.1| - 0.00015 21.6 0.1 0.00088 19.1 0.0 1.9 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|307594447|ref|YP_003900764.1| - 0.011 15.1 1.2 0.11 11.8 0.2 2.3 2 1 0 2 2 2 0 Dephospho-CoA kinase AAA_19 PF13245.1 gi|307594447|ref|YP_003900764.1| - 0.013 15.2 1.6 0.035 13.8 0.2 2.4 2 2 0 3 3 3 0 Part of AAA domain ATP_bind_2 PF03668.10 gi|307594447|ref|YP_003900764.1| - 0.021 13.9 1.6 0.19 10.7 1.1 2.1 1 1 0 1 1 1 0 P-loop ATPase protein family cobW PF02492.14 gi|307594447|ref|YP_003900764.1| - 0.032 13.6 0.1 1 8.7 0.1 2.2 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|307594447|ref|YP_003900764.1| - 0.039 14.1 0.1 0.096 12.8 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307594447|ref|YP_003900764.1| - 0.044 13.9 0.5 0.17 12.0 0.3 2.2 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|307594447|ref|YP_003900764.1| - 0.045 12.8 0.1 0.2 10.7 0.1 2.2 1 1 0 1 1 1 0 Zeta toxin Pribosyltran PF00156.22 gi|307594447|ref|YP_003900764.1| - 0.057 13.1 0.5 0.11 12.2 0.3 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase domain AAA_30 PF13604.1 gi|307594447|ref|YP_003900764.1| - 0.064 12.8 0.0 1.5 8.3 0.1 2.5 1 1 1 2 2 2 0 AAA domain Guanylate_kin PF00625.16 gi|307594447|ref|YP_003900764.1| - 0.083 12.3 0.1 0.15 11.5 0.0 1.4 2 0 0 2 2 1 0 Guanylate kinase APS_kinase PF01583.15 gi|307594447|ref|YP_003900764.1| - 0.094 12.3 0.5 0.22 11.1 0.1 2.0 2 1 0 2 2 1 0 Adenylylsulphate kinase dNK PF01712.14 gi|307594447|ref|YP_003900764.1| - 0.095 12.6 0.0 0.18 11.6 0.0 1.5 1 1 0 1 1 1 0 Deoxynucleoside kinase NTPase_1 PF03266.10 gi|307594447|ref|YP_003900764.1| - 0.14 11.8 3.1 1.7 8.3 1.2 2.8 1 1 1 3 3 3 0 NTPase AAA_28 PF13521.1 gi|307594447|ref|YP_003900764.1| - 0.16 11.9 0.5 0.51 10.2 0.0 2.0 1 1 1 2 2 2 0 AAA domain TRM PF02005.11 gi|307594448|ref|YP_003900765.1| - 7.2e-86 288.4 0.0 8.2e-86 288.2 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|307594448|ref|YP_003900765.1| - 2.3e-07 30.8 0.0 4.4e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|307594448|ref|YP_003900765.1| - 4.5e-07 29.6 0.0 7.2e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|307594448|ref|YP_003900765.1| - 7.7e-06 25.5 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|307594448|ref|YP_003900765.1| - 0.00011 21.6 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|307594448|ref|YP_003900765.1| - 0.0032 18.0 0.0 0.0093 16.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|307594448|ref|YP_003900765.1| - 0.0051 15.8 0.0 0.008 15.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase MTS PF05175.9 gi|307594448|ref|YP_003900765.1| - 0.0073 15.7 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|307594448|ref|YP_003900765.1| - 0.073 13.4 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|307594448|ref|YP_003900765.1| - 0.085 13.6 0.0 0.16 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HTH_3 PF01381.17 gi|307594449|ref|YP_003900766.1| - 1.9e-09 37.2 0.8 8.6e-09 35.1 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|307594449|ref|YP_003900766.1| - 5.2e-09 36.0 0.2 1.5e-08 34.5 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|307594449|ref|YP_003900766.1| - 3.8e-07 30.2 0.5 1.1e-06 28.7 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|307594449|ref|YP_003900766.1| - 3.6e-05 23.3 0.0 8.9e-05 22.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|307594449|ref|YP_003900766.1| - 4.2e-05 23.0 0.2 0.00016 21.2 0.1 2.1 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|307594449|ref|YP_003900766.1| - 0.00035 20.3 0.2 0.00098 18.9 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase MerR PF00376.18 gi|307594449|ref|YP_003900766.1| - 0.00095 18.6 0.2 0.002 17.6 0.2 1.6 1 0 0 1 1 1 1 MerR family regulatory protein HTH_28 PF13518.1 gi|307594449|ref|YP_003900766.1| - 0.0011 18.8 0.0 0.0035 17.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|307594449|ref|YP_003900766.1| - 0.0021 17.8 0.1 0.0054 16.4 0.0 1.7 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_20 PF12840.2 gi|307594449|ref|YP_003900766.1| - 0.0037 17.0 0.0 0.0085 15.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|307594449|ref|YP_003900766.1| - 0.0038 17.4 0.6 0.012 15.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|307594449|ref|YP_003900766.1| - 0.014 14.9 0.0 0.032 13.7 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_26 PF13443.1 gi|307594449|ref|YP_003900766.1| - 0.015 15.4 0.1 0.033 14.3 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|307594449|ref|YP_003900766.1| - 0.017 14.4 0.0 0.038 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|307594449|ref|YP_003900766.1| - 0.018 14.5 0.1 0.042 13.3 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_25 PF13413.1 gi|307594449|ref|YP_003900766.1| - 0.036 13.6 0.6 0.079 12.6 0.4 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.1 gi|307594449|ref|YP_003900766.1| - 0.051 13.3 0.1 0.25 11.1 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_38 PF13936.1 gi|307594449|ref|YP_003900766.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|307594449|ref|YP_003900766.1| - 0.092 12.3 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.11 gi|307594449|ref|YP_003900766.1| - 0.1 11.9 0.4 0.1 11.9 0.3 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Fibrillarin PF01269.12 gi|307594450|ref|YP_003900767.1| - 2.8e-99 330.6 0.4 3.1e-99 330.5 0.3 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|307594450|ref|YP_003900767.1| - 5.4e-06 26.0 0.0 1.2e-05 24.9 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|307594450|ref|YP_003900767.1| - 0.0019 17.7 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.13 gi|307594450|ref|YP_003900767.1| - 0.056 12.5 0.0 0.13 11.3 0.0 1.5 1 1 1 2 2 2 0 ubiE/COQ5 methyltransferase family Nop PF01798.13 gi|307594451|ref|YP_003900768.1| - 7.4e-48 161.6 0.9 3.4e-47 159.4 0.1 2.1 2 0 0 2 2 2 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|307594451|ref|YP_003900768.1| - 3e-22 78.1 0.0 7.8e-22 76.8 0.0 1.8 1 0 0 1 1 1 1 NOSIC (NUC001) domain Neurensin PF14927.1 gi|307594452|ref|YP_003900769.1| - 0.62 9.4 2.6 14 5.0 0.2 2.2 2 0 0 2 2 2 0 Neurensin DUF3185 PF11381.3 gi|307594452|ref|YP_003900769.1| - 0.83 9.4 5.8 2 8.2 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF202 PF02656.10 gi|307594452|ref|YP_003900769.1| - 3.6 7.8 5.2 21 5.3 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF202) TauE PF01925.14 gi|307594454|ref|YP_003900771.1| - 1.3e-46 159.0 40.2 1.5e-46 158.8 27.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF2269 PF10027.4 gi|307594454|ref|YP_003900771.1| - 0.022 14.5 0.6 0.022 14.5 0.4 2.1 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF1304 PF06993.7 gi|307594454|ref|YP_003900771.1| - 5 6.8 9.5 0.34 10.6 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1304) H_PPase PF03030.11 gi|307594455|ref|YP_003900772.1| - 3.8e-215 716.1 36.5 4.3e-215 715.9 25.3 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase DUF565 PF04483.7 gi|307594455|ref|YP_003900772.1| - 0.22 11.6 0.1 0.22 11.6 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF565) Peptidase_M24 PF00557.19 gi|307594457|ref|YP_003900774.1| - 7.5e-53 179.1 0.0 9.8e-53 178.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|307594457|ref|YP_003900774.1| - 2.7e-11 44.0 0.0 5.4e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CRAL_TRIO PF00650.15 gi|307594457|ref|YP_003900774.1| - 0.093 12.2 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 CRAL/TRIO domain DUF3027 PF11228.3 gi|307594457|ref|YP_003900774.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3027) His_Phos_1 PF00300.17 gi|307594458|ref|YP_003900775.1| - 4.2e-27 95.1 0.0 5e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Radical_SAM PF04055.16 gi|307594460|ref|YP_003900777.1| - 2.6e-13 50.4 0.0 4.4e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|307594460|ref|YP_003900777.1| - 6.5e-07 29.5 0.0 1.4e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|307594460|ref|YP_003900777.1| - 3.2e-05 23.9 0.0 8.9e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|307594460|ref|YP_003900777.1| - 0.00066 19.9 0.0 0.0018 18.6 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain YyzF PF14116.1 gi|307594460|ref|YP_003900777.1| - 0.042 13.7 0.3 2.3 8.2 0.0 2.2 2 0 0 2 2 2 0 YyzF-like protein Radical_SAM PF04055.16 gi|307594461|ref|YP_003900778.1| - 7.6e-24 84.7 0.1 1.7e-23 83.5 0.1 1.6 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|307594461|ref|YP_003900778.1| - 9e-10 38.7 0.2 2.2e-09 37.5 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|307594461|ref|YP_003900778.1| - 2.9e-09 37.1 0.0 5.7e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|307594461|ref|YP_003900778.1| - 3.3e-09 36.7 0.0 5.9e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|307594461|ref|YP_003900778.1| - 0.028 13.6 0.0 2.1 7.6 0.0 2.3 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Beta-Casp PF10996.3 gi|307594462|ref|YP_003900779.1| - 1.8e-18 66.6 0.0 4e-18 65.5 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|307594462|ref|YP_003900779.1| - 2.1e-17 63.4 0.3 3.9e-17 62.5 0.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|307594462|ref|YP_003900779.1| - 3.8e-12 46.1 0.0 6.8e-12 45.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|307594462|ref|YP_003900779.1| - 1.6e-10 40.6 0.0 3.9e-10 39.3 0.0 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase DRMBL PF07522.9 gi|307594462|ref|YP_003900779.1| - 0.061 13.3 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase TIP49 PF06068.8 gi|307594463|ref|YP_003900780.1| - 4.3e-151 503.1 0.0 5e-151 502.9 0.0 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|307594463|ref|YP_003900780.1| - 6.3e-11 42.5 0.1 5.6e-08 33.0 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|307594463|ref|YP_003900780.1| - 6.6e-09 36.0 0.0 8.6e-07 29.1 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|307594463|ref|YP_003900780.1| - 1.4e-08 34.0 3.5 7.6e-05 21.8 0.0 3.8 3 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|307594463|ref|YP_003900780.1| - 1.4e-05 25.2 0.1 0.0087 16.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|307594463|ref|YP_003900780.1| - 4.5e-05 23.1 0.5 0.00013 21.6 0.3 1.7 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|307594463|ref|YP_003900780.1| - 0.00035 19.8 0.1 0.0012 18.0 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|307594463|ref|YP_003900780.1| - 0.00041 19.8 0.1 0.1 12.1 0.0 2.8 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|307594463|ref|YP_003900780.1| - 0.0005 19.8 0.1 0.013 15.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|307594463|ref|YP_003900780.1| - 0.00073 20.3 0.1 0.0027 18.5 0.0 2.0 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|307594463|ref|YP_003900780.1| - 0.00083 18.8 0.0 0.0018 17.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|307594463|ref|YP_003900780.1| - 0.00088 18.2 0.0 0.0022 16.9 0.0 1.6 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_25 PF13481.1 gi|307594463|ref|YP_003900780.1| - 0.001 18.4 0.0 0.0021 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|307594463|ref|YP_003900780.1| - 0.0018 17.4 0.1 0.0033 16.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.7 gi|307594463|ref|YP_003900780.1| - 0.0021 17.7 0.1 0.043 13.4 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.1 gi|307594463|ref|YP_003900780.1| - 0.0035 17.2 0.0 0.007 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|307594463|ref|YP_003900780.1| - 0.005 16.7 0.0 0.75 9.7 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|307594463|ref|YP_003900780.1| - 0.016 15.4 0.0 0.048 13.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|307594463|ref|YP_003900780.1| - 0.021 14.7 0.2 0.11 12.4 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_11 PF13086.1 gi|307594463|ref|YP_003900780.1| - 0.039 13.5 0.0 0.085 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|307594463|ref|YP_003900780.1| - 0.055 12.4 0.0 0.077 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF3525 PF12039.3 gi|307594463|ref|YP_003900780.1| - 0.059 11.8 0.0 0.14 10.6 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3525) PhoH PF02562.11 gi|307594463|ref|YP_003900780.1| - 0.064 12.4 0.1 0.14 11.4 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.17 gi|307594463|ref|YP_003900780.1| - 0.072 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|307594463|ref|YP_003900780.1| - 0.077 13.2 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter DUF433 PF04255.9 gi|307594464|ref|YP_003900781.1| - 0.12 11.8 0.6 1.5 8.2 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF433) PhoU_div PF01865.11 gi|307594465|ref|YP_003900782.1| - 3.5e-20 72.1 8.5 4.2e-20 71.8 5.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 AAA_PrkA PF08298.6 gi|307594465|ref|YP_003900782.1| - 0.075 11.7 1.7 0.14 10.7 0.2 1.9 2 0 0 2 2 2 0 PrkA AAA domain PhoU PF01895.14 gi|307594465|ref|YP_003900782.1| - 0.087 13.2 12.3 0.39 11.1 2.6 2.5 2 1 0 2 2 2 0 PhoU domain YbjQ_1 PF01906.12 gi|307594465|ref|YP_003900782.1| - 0.13 12.7 0.3 0.38 11.1 0.0 1.9 2 0 0 2 2 2 0 Putative heavy-metal-binding Dpoe2NT PF12213.3 gi|307594465|ref|YP_003900782.1| - 0.27 11.1 3.2 0.39 10.6 0.4 2.4 2 0 0 2 2 2 0 DNA polymerases epsilon N terminal HAD_2 PF13419.1 gi|307594466|ref|YP_003900783.1| - 1.9e-24 86.8 0.0 2.3e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|307594466|ref|YP_003900783.1| - 3.3e-10 39.5 0.1 6e-10 38.7 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|307594466|ref|YP_003900783.1| - 9.8e-10 39.1 0.1 2.4e-08 34.6 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|307594466|ref|YP_003900783.1| - 9.8e-05 22.5 0.4 0.00014 22.0 0.3 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|307594466|ref|YP_003900783.1| - 0.11 12.4 0.0 3.1 7.7 0.0 2.6 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Robl_LC7 PF03259.12 gi|307594467|ref|YP_003900784.1| - 2.7e-06 26.8 0.2 3.5e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|307594467|ref|YP_003900784.1| - 4.3e-05 23.1 0.0 4.8e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting Ald_Xan_dh_C2 PF02738.13 gi|307594468|ref|YP_003900785.1| - 4.8e-100 335.4 0.0 5.9e-83 279.0 0.0 2.1 1 1 1 2 2 2 2 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|307594468|ref|YP_003900785.1| - 1.2e-16 60.7 0.0 2.4e-16 59.7 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF816 PF05674.7 gi|307594469|ref|YP_003900786.1| - 0.0026 17.4 0.4 0.0034 17.1 0.3 1.2 1 0 0 1 1 1 1 Baculovirus protein of unknown function (DUF816) MMPL PF03176.10 gi|307594472|ref|YP_003900789.1| - 1.3e-68 231.1 35.6 1e-44 152.6 10.2 2.2 2 0 0 2 2 2 2 MMPL family ABC_tran PF00005.22 gi|307594473|ref|YP_003900790.1| - 1.7e-32 112.5 0.0 2.8e-32 111.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307594473|ref|YP_003900790.1| - 3.4e-11 43.6 0.0 2.2e-09 37.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|307594473|ref|YP_003900790.1| - 0.00026 20.3 0.1 0.085 12.0 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|307594473|ref|YP_003900790.1| - 0.0016 17.9 0.3 0.0034 16.8 0.2 1.5 1 1 1 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|307594473|ref|YP_003900790.1| - 0.002 18.2 0.4 0.0096 16.0 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|307594473|ref|YP_003900790.1| - 0.0024 17.3 0.1 0.0053 16.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|307594473|ref|YP_003900790.1| - 0.0032 16.6 0.1 0.0051 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|307594473|ref|YP_003900790.1| - 0.0048 16.8 0.0 0.0091 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|307594473|ref|YP_003900790.1| - 0.0068 15.5 0.1 0.71 8.8 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|307594473|ref|YP_003900790.1| - 0.0071 15.2 0.1 0.013 14.3 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein cobW PF02492.14 gi|307594473|ref|YP_003900790.1| - 0.012 15.1 0.3 0.018 14.4 0.1 1.7 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|307594473|ref|YP_003900790.1| - 0.018 15.8 1.3 0.056 14.2 0.2 2.3 2 1 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|307594473|ref|YP_003900790.1| - 0.026 13.0 0.0 3.7 5.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|307594473|ref|YP_003900790.1| - 0.03 13.7 0.4 0.073 12.4 0.0 1.9 3 0 0 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|307594473|ref|YP_003900790.1| - 0.044 13.4 0.0 0.1 12.2 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase MobB PF03205.9 gi|307594473|ref|YP_003900790.1| - 0.061 13.0 0.3 0.15 11.7 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|307594473|ref|YP_003900790.1| - 0.061 12.8 0.1 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF3502 PF12010.3 gi|307594473|ref|YP_003900790.1| - 0.075 13.0 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3502) AAA_14 PF13173.1 gi|307594473|ref|YP_003900790.1| - 0.08 12.8 0.0 0.36 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|307594473|ref|YP_003900790.1| - 0.084 12.5 0.9 0.31 10.6 0.1 2.1 1 1 1 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|307594473|ref|YP_003900790.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|307594473|ref|YP_003900790.1| - 0.11 12.2 0.2 0.3 10.8 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|307594473|ref|YP_003900790.1| - 0.12 12.6 0.9 0.56 10.5 0.2 2.0 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|307594473|ref|YP_003900790.1| - 0.13 10.7 0.0 0.23 9.9 0.0 1.4 1 1 0 1 1 1 0 RNA12 protein PilJ PF13675.1 gi|307594474|ref|YP_003900791.1| - 0.027 14.7 0.9 0.25 11.6 0.0 2.5 2 1 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term FliJ PF02050.11 gi|307594474|ref|YP_003900791.1| - 0.12 12.3 2.7 14 5.7 1.2 2.8 2 1 0 2 2 2 0 Flagellar FliJ protein YlbD_coat PF14071.1 gi|307594474|ref|YP_003900791.1| - 0.15 12.1 4.3 4.2 7.4 1.2 2.5 2 0 0 2 2 2 0 Putative coat protein GTP_cyclohydroI PF01227.17 gi|307594475|ref|YP_003900792.1| - 1.9e-47 160.8 0.0 2.3e-47 160.5 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I RNA_binding PF01877.12 gi|307594476|ref|YP_003900793.1| - 1.6e-27 95.8 0.0 2e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 RNA binding ILVD_EDD PF00920.16 gi|307594477|ref|YP_003900794.1| - 4.6e-218 724.8 0.2 5.2e-218 724.6 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family Antitoxin-MazE PF04014.13 gi|307594477|ref|YP_003900794.1| - 0.38 10.5 3.1 7.7 6.3 0.0 3.1 3 0 0 3 3 3 0 Antidote-toxin recognition MazE PBP PF01161.15 gi|307594478|ref|YP_003900795.1| - 4.7e-40 136.8 0.0 5.4e-40 136.5 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ABC2_membrane PF01061.19 gi|307594479|ref|YP_003900796.1| - 2.6e-33 114.9 20.9 2.6e-33 114.9 14.5 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|307594479|ref|YP_003900796.1| - 1.8e-16 60.1 24.4 1.8e-16 60.1 16.9 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|307594479|ref|YP_003900796.1| - 4.6e-10 38.8 19.8 6.1e-10 38.4 13.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|307594479|ref|YP_003900796.1| - 8.6e-09 34.9 31.8 1.3e-08 34.2 22.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|307594479|ref|YP_003900796.1| - 0.00029 20.2 17.0 0.00029 20.2 11.8 2.6 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|307594480|ref|YP_003900797.1| - 1.5e-31 109.5 0.0 2.4e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307594480|ref|YP_003900797.1| - 1.2e-12 48.4 0.0 3.5e-08 33.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|307594480|ref|YP_003900797.1| - 1.7e-08 34.8 0.1 3e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|307594480|ref|YP_003900797.1| - 0.00097 18.2 0.0 0.048 12.7 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|307594480|ref|YP_003900797.1| - 0.001 19.4 1.0 0.0024 18.2 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|307594480|ref|YP_003900797.1| - 0.011 15.1 0.1 0.027 14.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.17 gi|307594480|ref|YP_003900797.1| - 0.022 14.1 0.2 0.056 12.8 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|307594480|ref|YP_003900797.1| - 0.04 13.3 0.3 2.8 7.2 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|307594480|ref|YP_003900797.1| - 0.083 13.0 0.9 0.58 10.3 0.2 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|307594480|ref|YP_003900797.1| - 0.087 12.0 0.0 4.8 6.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|307594480|ref|YP_003900797.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain CxxCxxCC PF03692.10 gi|307594481|ref|YP_003900798.1| - 5.4e-09 36.4 0.1 1e-08 35.5 0.0 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HAD_2 PF13419.1 gi|307594482|ref|YP_003900799.1| - 3e-15 56.8 0.0 4.5e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|307594482|ref|YP_003900799.1| - 0.0044 16.7 0.0 0.0099 15.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|307594482|ref|YP_003900799.1| - 0.0073 16.7 0.0 0.038 14.3 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase ABC_transp_aux PF09822.4 gi|307594482|ref|YP_003900799.1| - 0.081 12.3 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 ABC-type uncharacterized transport system GGDN PF05165.7 gi|307594483|ref|YP_003900800.1| - 2.4e-39 134.8 0.0 5.7e-39 133.6 0.0 1.5 1 1 0 1 1 1 1 GGDN family MarR_2 PF12802.2 gi|307594484|ref|YP_003900801.1| - 3.1e-07 29.9 0.1 1.6e-06 27.7 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|307594484|ref|YP_003900801.1| - 4.8e-07 29.0 0.0 1.1e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|307594484|ref|YP_003900801.1| - 5.7e-07 29.1 0.2 1.8e-06 27.5 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|307594484|ref|YP_003900801.1| - 0.00011 21.7 0.0 0.00011 21.7 0.0 1.9 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|307594484|ref|YP_003900801.1| - 0.00024 20.8 0.0 0.00038 20.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain gpUL132 PF11359.3 gi|307594484|ref|YP_003900801.1| - 0.003 16.9 0.7 0.01 15.1 0.0 1.9 2 0 0 2 2 2 1 Glycoprotein UL132 HTH_27 PF13463.1 gi|307594484|ref|YP_003900801.1| - 0.0036 17.6 0.3 0.015 15.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|307594484|ref|YP_003900801.1| - 0.0044 16.5 0.0 0.0089 15.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|307594484|ref|YP_003900801.1| - 0.0084 15.7 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|307594484|ref|YP_003900801.1| - 0.015 15.3 0.0 0.035 14.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|307594484|ref|YP_003900801.1| - 0.017 14.7 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|307594484|ref|YP_003900801.1| - 0.041 13.8 0.0 0.083 12.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|307594484|ref|YP_003900801.1| - 0.081 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Epiglycanin_C PF14654.1 gi|307594484|ref|YP_003900801.1| - 0.099 12.6 0.1 0.27 11.2 0.1 1.7 1 0 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region CCAP PF11105.3 gi|307594484|ref|YP_003900801.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Arthropod cardioacceleratory peptide 2a TMEM154 PF15102.1 gi|307594484|ref|YP_003900801.1| - 0.12 12.0 1.0 0.21 11.2 0.7 1.3 1 0 0 1 1 1 0 TMEM154 protein family GntR PF00392.16 gi|307594484|ref|YP_003900801.1| - 0.12 11.8 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family CSTF2_hinge PF14327.1 gi|307594485|ref|YP_003900802.1| - 0.0062 16.5 2.7 0.069 13.2 0.2 2.7 2 0 0 2 2 2 1 Hinge domain of cleavage stimulation factor subunit 2 Translin PF01997.11 gi|307594485|ref|YP_003900802.1| - 0.094 12.2 2.4 0.11 12.0 0.6 1.8 2 1 0 2 2 2 0 Translin family HAD_2 PF13419.1 gi|307594486|ref|YP_003900803.1| - 1.6e-12 47.9 0.1 3.4e-12 46.9 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|307594486|ref|YP_003900803.1| - 0.00024 21.3 0.0 0.00032 20.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|307594486|ref|YP_003900803.1| - 0.0031 17.3 0.1 0.014 15.2 0.1 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|307594486|ref|YP_003900803.1| - 0.0065 16.0 0.0 0.47 9.9 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|307594486|ref|YP_003900803.1| - 0.013 15.9 0.0 0.019 15.3 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase VKOR PF07884.9 gi|307594487|ref|YP_003900804.1| - 9.5e-25 87.0 14.5 1.1e-24 86.8 10.1 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family PBP_like PF12727.2 gi|307594488|ref|YP_003900805.1| - 2e-63 212.8 0.0 4.2e-63 211.8 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.12 gi|307594488|ref|YP_003900805.1| - 5.8e-53 178.5 0.4 8.9e-53 177.9 0.3 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|307594488|ref|YP_003900805.1| - 9.9e-30 102.8 0.2 2.2e-29 101.6 0.1 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|307594488|ref|YP_003900805.1| - 7.7e-17 61.0 0.1 7.6e-16 57.8 0.0 2.6 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|307594488|ref|YP_003900805.1| - 1.1e-09 38.2 0.0 2.2e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|307594488|ref|YP_003900805.1| - 0.012 14.9 0.0 0.028 13.8 0.0 1.6 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|307594488|ref|YP_003900805.1| - 0.014 14.6 0.0 0.099 11.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 PBP_like_2 PF12849.2 gi|307594488|ref|YP_003900805.1| - 0.12 11.7 0.0 0.37 10.2 0.0 1.6 1 1 0 1 1 1 0 PBP superfamily domain IF2_N PF04760.10 gi|307594488|ref|YP_003900805.1| - 0.14 11.8 0.1 0.4 10.3 0.1 1.7 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region AMP-binding PF00501.23 gi|307594489|ref|YP_003900806.1| - 3.9e-77 259.3 0.0 5e-77 259.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|307594489|ref|YP_003900806.1| - 2e-10 41.4 0.0 5.3e-10 40.1 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACP_syn_III_C PF08541.5 gi|307594489|ref|YP_003900806.1| - 0.14 12.1 0.0 0.48 10.4 0.0 1.9 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMP-binding PF00501.23 gi|307594490|ref|YP_003900807.1| - 1.3e-74 251.0 0.0 1.6e-74 250.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|307594490|ref|YP_003900807.1| - 3.9e-14 53.3 0.5 1e-12 48.8 0.2 2.5 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Glu_synthase PF01645.12 gi|307594491|ref|YP_003900808.1| - 2.4e-22 79.3 12.6 4.9e-20 71.7 6.7 3.6 1 1 1 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|307594491|ref|YP_003900808.1| - 9.4e-21 74.0 5.8 1.2e-14 53.9 1.6 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|307594491|ref|YP_003900808.1| - 0.0031 16.7 1.0 0.006 15.7 0.7 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase UbiA PF01040.13 gi|307594492|ref|YP_003900809.1| - 2e-24 86.1 30.0 2e-24 86.1 20.8 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family ATP-synt_F PF01990.12 gi|307594493|ref|YP_003900810.1| - 3.1e-14 53.1 0.1 3.6e-14 52.9 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF46 PF01864.12 gi|307594494|ref|YP_003900811.1| - 2.3e-46 157.8 3.1 2.7e-46 157.6 2.2 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|307594494|ref|YP_003900811.1| - 4.6e-07 29.7 1.4 4.6e-07 29.7 1.0 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family DUF92 PF01940.11 gi|307594494|ref|YP_003900811.1| - 0.17 11.0 0.8 0.23 10.5 0.3 1.3 1 1 0 1 1 1 0 Integral membrane protein DUF92 zf-Di19 PF05605.7 gi|307594495|ref|YP_003900812.1| - 1.3e-09 38.0 5.0 2.7e-06 27.4 0.1 3.1 3 0 0 3 3 3 1 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.1 gi|307594495|ref|YP_003900812.1| - 3.8e-09 36.3 7.5 0.032 14.5 0.0 4.4 4 0 0 4 4 4 2 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|307594495|ref|YP_003900812.1| - 1.9e-07 30.9 9.5 0.12 12.7 0.1 4.4 4 1 0 4 4 4 3 C2H2-type zinc finger zf-met PF12874.2 gi|307594495|ref|YP_003900812.1| - 1.1e-06 28.6 6.7 0.001 19.2 0.0 3.6 4 0 0 4 4 3 2 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.3 gi|307594495|ref|YP_003900812.1| - 7.7e-06 25.8 5.9 0.12 12.5 0.0 3.8 4 0 0 4 4 4 2 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.2 gi|307594495|ref|YP_003900812.1| - 2.6e-05 24.2 4.5 0.22 11.6 0.1 3.5 1 1 2 4 4 4 2 C2H2 type zinc-finger (2 copies) zf-C2H2 PF00096.21 gi|307594495|ref|YP_003900812.1| - 5.7e-05 23.2 13.5 0.22 11.9 0.1 4.6 4 1 0 4 4 4 1 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.1 gi|307594495|ref|YP_003900812.1| - 7.1e-05 22.1 4.8 0.0064 15.9 0.2 3.0 3 1 0 3 3 2 1 zinc-ribbon domain DZR PF12773.2 gi|307594495|ref|YP_003900812.1| - 7.4e-05 22.4 2.9 0.018 14.8 0.7 3.1 1 1 1 2 2 2 2 Double zinc ribbon zf-DNA_Pol PF08996.5 gi|307594495|ref|YP_003900812.1| - 0.0034 16.7 0.9 0.004 16.5 0.2 1.4 1 1 0 1 1 1 1 DNA Polymerase alpha zinc finger Sgf11 PF08209.6 gi|307594495|ref|YP_003900812.1| - 0.0044 16.2 7.2 0.029 13.6 0.1 3.9 4 0 0 4 4 4 1 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|307594495|ref|YP_003900812.1| - 0.0058 16.5 8.5 0.23 11.4 1.8 3.8 3 1 1 4 4 4 1 Zinc ribbon domain zf-RING_3 PF14369.1 gi|307594495|ref|YP_003900812.1| - 0.0079 16.1 2.4 24 5.0 0.0 3.9 4 0 0 4 4 4 0 zinc-finger Elf1 PF05129.8 gi|307594495|ref|YP_003900812.1| - 0.009 15.6 6.2 0.29 10.8 0.7 3.0 1 1 2 3 3 3 2 Transcription elongation factor Elf1 like zinc-ribbons_6 PF07191.7 gi|307594495|ref|YP_003900812.1| - 0.01 15.6 2.9 0.23 11.2 1.0 3.0 2 1 0 2 2 2 1 zinc-ribbons Prok-RING_1 PF14446.1 gi|307594495|ref|YP_003900812.1| - 0.025 14.3 6.1 28 4.5 0.1 4.1 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 zf-CpG_bind_C PF12269.3 gi|307594495|ref|YP_003900812.1| - 0.033 13.6 1.4 1.6 8.1 0.1 2.1 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain PRP21_like_P PF12230.3 gi|307594495|ref|YP_003900812.1| - 0.033 13.6 1.0 0.069 12.6 0.0 2.0 2 1 1 3 3 2 0 Pre-mRNA splicing factor PRP21 like protein zf-BED PF02892.10 gi|307594495|ref|YP_003900812.1| - 0.035 13.8 11.5 2.6 7.8 0.2 3.7 2 1 2 4 4 3 0 BED zinc finger DUF678 PF05077.7 gi|307594495|ref|YP_003900812.1| - 0.051 13.5 2.4 3.7 7.6 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF678) zf-ribbon_3 PF13248.1 gi|307594495|ref|YP_003900812.1| - 0.061 12.5 0.3 0.061 12.5 0.2 3.5 4 0 0 4 4 3 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|307594495|ref|YP_003900812.1| - 0.063 12.6 7.0 0.47 9.8 0.3 3.0 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain Ribosomal_L37ae PF01780.14 gi|307594495|ref|YP_003900812.1| - 0.066 13.0 1.6 8 6.4 0.0 2.9 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-ZPR1 PF03367.8 gi|307594495|ref|YP_003900812.1| - 0.072 12.2 2.3 0.14 11.2 0.1 2.2 3 0 0 3 3 2 0 ZPR1 zinc-finger domain OrfB_Zn_ribbon PF07282.6 gi|307594495|ref|YP_003900812.1| - 0.096 12.3 3.6 0.75 9.4 0.1 3.1 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|307594495|ref|YP_003900812.1| - 0.097 12.2 10.8 0.15 11.6 1.6 3.4 3 1 0 3 3 3 0 zinc-ribbon domain zf-nanos PF05741.8 gi|307594495|ref|YP_003900812.1| - 0.15 12.0 4.7 41 4.2 0.0 4.0 4 0 0 4 4 4 0 Nanos RNA binding domain zf-Sec23_Sec24 PF04810.10 gi|307594495|ref|YP_003900812.1| - 0.17 11.4 5.1 3.4 7.3 0.7 3.4 3 1 0 3 3 3 0 Sec23/Sec24 zinc finger Fer4_17 PF13534.1 gi|307594495|ref|YP_003900812.1| - 0.17 12.2 1.9 1.8 8.9 0.6 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-UBP PF02148.14 gi|307594495|ref|YP_003900812.1| - 0.3 11.2 2.0 2.5 8.3 1.0 2.2 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein Zn_ribbon_recom PF13408.1 gi|307594495|ref|YP_003900812.1| - 0.32 11.2 8.7 12 6.2 4.4 3.2 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain IBR PF01485.16 gi|307594495|ref|YP_003900812.1| - 0.38 10.6 4.8 1.8 8.5 0.4 2.8 2 1 1 3 3 3 0 IBR domain HypA PF01155.14 gi|307594495|ref|YP_003900812.1| - 0.39 10.4 3.9 3.8 7.2 1.3 2.6 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family C1_2 PF03107.11 gi|307594495|ref|YP_003900812.1| - 0.43 10.7 5.0 21 5.3 0.1 3.4 3 0 0 3 3 3 0 C1 domain UPF0547 PF10571.4 gi|307594495|ref|YP_003900812.1| - 0.53 10.0 9.4 1.9 8.2 1.8 3.1 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 PAAR_motif PF05488.8 gi|307594495|ref|YP_003900812.1| - 0.56 10.2 3.1 3.6 7.6 0.6 2.6 1 1 1 2 2 2 0 PAAR motif amfpi-1 PF12190.3 gi|307594495|ref|YP_003900812.1| - 0.57 10.7 4.7 23 5.5 0.0 3.0 2 1 0 3 3 3 0 Fungal protease inhibitor zf-ISL3 PF14690.1 gi|307594495|ref|YP_003900812.1| - 0.93 9.5 8.3 1.2 9.1 1.9 3.1 3 1 1 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.1 gi|307594495|ref|YP_003900812.1| - 0.97 8.6 7.7 41 3.4 3.7 3.0 2 1 0 2 2 2 0 Transcription factor zinc-finger Lar_restr_allev PF14354.1 gi|307594495|ref|YP_003900812.1| - 1 9.7 7.4 5.3 7.4 2.1 3.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|307594495|ref|YP_003900812.1| - 1.3 8.4 9.4 3.9 6.8 0.1 3.7 4 0 0 4 4 4 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|307594495|ref|YP_003900812.1| - 1.3 8.6 8.2 1.6 8.3 0.2 3.7 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_4 PF13717.1 gi|307594495|ref|YP_003900812.1| - 1.3 8.7 12.3 3.2 7.5 2.6 3.6 3 1 0 3 3 3 0 zinc-ribbon domain PHF5 PF03660.9 gi|307594495|ref|YP_003900812.1| - 1.3 9.0 5.6 8.1 6.5 2.1 2.6 1 1 1 2 2 2 0 PHF5-like protein zf-C2H2_6 PF13912.1 gi|307594495|ref|YP_003900812.1| - 1.3 8.9 15.1 1.6 8.7 0.1 4.6 5 1 0 5 5 4 0 C2H2-type zinc finger FYVE PF01363.16 gi|307594495|ref|YP_003900812.1| - 2 8.3 7.1 3.9 7.4 2.7 2.6 2 1 1 3 3 2 0 FYVE zinc finger HNH PF01844.18 gi|307594495|ref|YP_003900812.1| - 2.3 8.1 7.1 23 4.9 0.1 3.7 4 0 0 4 4 4 0 HNH endonuclease Endonuclease_7 PF02945.10 gi|307594495|ref|YP_003900812.1| - 2.8 7.6 7.2 0.35 10.5 0.9 2.3 1 1 2 3 3 3 0 Recombination endonuclease VII CpXC PF14353.1 gi|307594495|ref|YP_003900812.1| - 3 7.8 7.8 9.1 6.2 0.8 3.0 2 2 0 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|307594495|ref|YP_003900812.1| - 3 7.7 7.3 7.5 6.4 1.5 3.2 2 1 2 4 4 4 0 Transposase zinc-ribbon domain zf-LITAF-like PF10601.4 gi|307594495|ref|YP_003900812.1| - 3.2 7.6 5.8 19 5.2 0.0 3.4 4 0 0 4 4 4 0 LITAF-like zinc ribbon domain DUF329 PF03884.9 gi|307594495|ref|YP_003900812.1| - 3.6 7.1 5.6 2.7 7.6 0.1 3.0 4 0 0 4 4 3 0 Domain of unknown function (DUF329) zf-trcl PF13451.1 gi|307594495|ref|YP_003900812.1| - 4.7 6.9 5.2 65 3.2 0.1 3.2 3 0 0 3 3 3 0 Probable zinc-binding domain TFIIS_C PF01096.13 gi|307594495|ref|YP_003900812.1| - 8.1 6.1 8.2 12 5.6 0.0 3.4 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) DUF35 PF01796.12 gi|307594497|ref|YP_003900814.1| - 6.3e-13 48.7 0.3 9.1e-13 48.2 0.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|307594497|ref|YP_003900814.1| - 5.7e-08 32.4 0.3 1.4e-07 31.1 0.1 1.7 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|307594497|ref|YP_003900814.1| - 0.023 14.4 0.3 0.04 13.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|307594497|ref|YP_003900814.1| - 0.032 13.8 0.2 0.059 13.0 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.4 gi|307594497|ref|YP_003900814.1| - 0.033 13.8 3.7 0.33 10.6 0.6 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|307594497|ref|YP_003900814.1| - 0.11 11.7 6.3 0.23 10.7 4.3 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|307594497|ref|YP_003900814.1| - 0.3 10.8 3.0 0.56 10.0 2.1 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF35 PF01796.12 gi|307594498|ref|YP_003900815.1| - 8.2e-09 35.5 1.6 1.1e-08 35.1 1.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|307594498|ref|YP_003900815.1| - 6.2e-05 22.7 0.2 9.5e-05 22.1 0.1 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Rad50_zn_hook PF04423.9 gi|307594498|ref|YP_003900815.1| - 0.12 11.9 0.5 0.21 11.1 0.3 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif DZR PF12773.2 gi|307594498|ref|YP_003900815.1| - 0.12 12.2 0.1 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S3_C PF00189.15 gi|307594499|ref|YP_003900816.1| - 4.8e-14 52.3 1.6 9.9e-14 51.3 1.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|307594499|ref|YP_003900816.1| - 1.5e-09 37.2 0.6 4.6e-09 35.7 0.1 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|307594499|ref|YP_003900816.1| - 0.077 12.6 1.2 0.14 11.8 0.3 1.9 2 0 0 2 2 2 0 KH domain KH_3 PF13014.1 gi|307594499|ref|YP_003900816.1| - 0.17 11.5 1.3 0.57 9.9 0.3 2.2 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.18 gi|307594500|ref|YP_003900817.1| - 2e-18 65.8 2.6 2.3e-18 65.5 1.8 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF2299 PF10061.4 gi|307594500|ref|YP_003900817.1| - 0.003 16.9 0.2 0.0035 16.7 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) DnaB_bind PF10410.4 gi|307594500|ref|YP_003900817.1| - 0.019 14.9 1.2 1.2 9.1 0.2 2.2 1 1 1 2 2 2 0 DnaB-helicase binding domain of primase Ribosomal_S9 PF00380.14 gi|307594500|ref|YP_003900817.1| - 0.022 15.0 1.0 0.031 14.5 0.7 1.6 1 1 0 1 1 1 0 Ribosomal protein S9/S16 Rad50_zn_hook PF04423.9 gi|307594500|ref|YP_003900817.1| - 0.028 13.9 0.7 0.055 12.9 0.5 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif MgtE_N PF03448.12 gi|307594500|ref|YP_003900817.1| - 0.051 13.8 0.1 0.88 9.9 0.0 2.0 2 0 0 2 2 2 0 MgtE intracellular N domain Enkurin PF13864.1 gi|307594500|ref|YP_003900817.1| - 0.16 12.1 1.6 0.2 11.8 1.1 1.4 1 1 0 1 1 1 0 Calmodulin-binding UPF0086 PF01868.11 gi|307594501|ref|YP_003900818.1| - 7.5e-12 44.7 0.1 9.1e-12 44.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 vATP-synt_E PF01991.13 gi|307594502|ref|YP_003900819.1| - 1.5e-14 53.7 7.2 2.5e-14 53.0 5.0 1.3 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Syntaxin_2 PF14523.1 gi|307594502|ref|YP_003900819.1| - 0.012 15.6 0.8 0.07 13.1 0.3 2.3 1 1 1 2 2 2 0 Syntaxin-like protein RGS PF00615.14 gi|307594502|ref|YP_003900819.1| - 0.042 13.9 0.1 0.08 13.0 0.1 1.4 1 0 0 1 1 1 0 Regulator of G protein signaling domain Ubiquitin_3 PF14836.1 gi|307594502|ref|YP_003900819.1| - 0.06 13.0 0.3 0.19 11.3 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin-like domain Paralemmin PF03285.10 gi|307594502|ref|YP_003900819.1| - 0.069 12.6 1.4 0.079 12.4 0.5 1.3 1 1 0 1 1 1 0 Paralemmin PHA_gran_rgn PF09650.5 gi|307594502|ref|YP_003900819.1| - 0.085 12.9 0.2 1.4 9.0 0.0 2.6 2 1 0 2 2 2 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) HK97-gp10_like PF04883.7 gi|307594502|ref|YP_003900819.1| - 0.12 13.3 0.1 0.36 11.7 0.0 1.9 2 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component ATP-synt_ab PF00006.20 gi|307594503|ref|YP_003900820.1| - 2.4e-82 275.5 0.0 3.2e-82 275.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|307594503|ref|YP_003900820.1| - 1.9e-14 54.0 0.6 3.3e-14 53.3 0.4 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|307594503|ref|YP_003900820.1| - 6.3e-12 45.5 0.5 1.9e-11 44.0 0.3 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|307594503|ref|YP_003900820.1| - 0.062 13.4 0.0 0.18 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|307594503|ref|YP_003900820.1| - 0.2 11.1 0.0 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain HTH_45 PF14947.1 gi|307594504|ref|YP_003900821.1| - 0.00086 19.0 0.1 0.0042 16.8 0.0 2.0 2 1 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.14 gi|307594504|ref|YP_003900821.1| - 0.0022 17.6 0.7 0.0056 16.3 0.1 2.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|307594504|ref|YP_003900821.1| - 0.0055 16.8 0.0 0.018 15.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|307594504|ref|YP_003900821.1| - 0.027 13.9 0.1 0.056 12.9 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF134 PF02001.11 gi|307594504|ref|YP_003900821.1| - 0.038 13.8 1.2 0.11 12.3 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function DUF134 MarR PF01047.17 gi|307594504|ref|YP_003900821.1| - 0.04 13.6 0.0 0.093 12.4 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|307594504|ref|YP_003900821.1| - 0.051 13.6 0.1 0.12 12.5 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_12 PF08461.5 gi|307594504|ref|YP_003900821.1| - 0.077 12.7 0.3 0.18 11.5 0.2 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.1 gi|307594504|ref|YP_003900821.1| - 0.082 12.7 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain tRNA-synt_1e PF01406.14 gi|307594505|ref|YP_003900822.1| - 7.9e-112 373.2 0.0 1.1e-111 372.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|307594505|ref|YP_003900822.1| - 7.5e-11 41.2 0.1 3.3e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|307594505|ref|YP_003900822.1| - 1.5e-09 37.9 0.4 6.3e-09 35.9 0.1 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|307594505|ref|YP_003900822.1| - 1.8e-09 36.7 0.1 1.1e-05 24.2 0.0 2.8 2 1 1 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|307594505|ref|YP_003900822.1| - 1.5e-08 33.1 0.0 2.8e-07 28.9 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Cir_Bir_Yir PF06022.6 gi|307594505|ref|YP_003900822.1| - 0.00044 19.5 0.1 0.00073 18.8 0.1 1.3 1 0 0 1 1 1 1 Plasmodium variant antigen protein Cir/Yir/Bir MutS_III PF05192.13 gi|307594505|ref|YP_003900822.1| - 0.069 12.9 0.0 17 5.1 0.0 2.8 2 1 0 2 2 2 0 MutS domain III Anticodon_1 PF08264.8 gi|307594505|ref|YP_003900822.1| - 0.23 11.2 1.2 0.37 10.5 0.1 1.9 2 0 0 2 2 2 0 Anticodon-binding domain of tRNA Glyco_hydro_15 PF00723.16 gi|307594506|ref|YP_003900823.1| - 3.7e-19 68.6 1.1 1.8e-11 43.2 0.4 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|307594506|ref|YP_003900823.1| - 1.8e-10 40.0 1.2 1.8e-10 40.0 0.8 1.5 2 0 0 2 2 2 1 Protein of unknown function, DUF608 Bac_rhamnosid PF05592.6 gi|307594506|ref|YP_003900823.1| - 0.00067 18.0 0.7 0.001 17.3 0.5 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Trehalase PF01204.13 gi|307594506|ref|YP_003900823.1| - 0.0054 15.4 0.0 0.01 14.5 0.0 1.3 1 0 0 1 1 1 1 Trehalase TPR_10 PF13374.1 gi|307594506|ref|YP_003900823.1| - 0.046 13.6 0.7 0.2 11.6 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat PFK PF00365.15 gi|307594507|ref|YP_003900824.1| - 7.3e-72 241.6 0.3 9.5e-72 241.3 0.2 1.2 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.16 gi|307594507|ref|YP_003900824.1| - 0.029 13.1 0.1 0.047 12.4 0.1 1.3 1 0 0 1 1 1 0 ATP-NAD kinase DAGK_cat PF00781.19 gi|307594507|ref|YP_003900824.1| - 0.092 12.1 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DeoC PF01791.4 gi|307594508|ref|YP_003900825.1| - 4.6e-36 124.2 0.0 5.4e-36 124.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase Creatininase PF02633.9 gi|307594509|ref|YP_003900826.1| - 9.1e-48 162.4 0.0 1.1e-47 162.1 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF309 PF03745.9 gi|307594511|ref|YP_003900828.1| - 4.2e-20 70.9 0.6 6.3e-20 70.3 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) SAF PF08666.7 gi|307594513|ref|YP_003900830.1| - 6.4e-18 64.9 0.2 1e-17 64.2 0.1 1.3 1 0 0 1 1 1 1 SAF domain DUF2190 PF09956.4 gi|307594513|ref|YP_003900830.1| - 0.07 12.9 0.1 1.3 8.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2190) GD_AH_C PF04295.8 gi|307594514|ref|YP_003900831.1| - 1.1e-157 524.7 0.2 1.2e-157 524.6 0.2 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus Ligase_CoA PF00549.14 gi|307594514|ref|YP_003900831.1| - 0.059 12.9 0.3 0.25 10.9 0.1 2.2 2 0 0 2 2 2 0 CoA-ligase Asp_protease_2 PF13650.1 gi|307594515|ref|YP_003900832.1| - 0.0017 18.8 0.0 0.0032 17.9 0.0 1.6 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|307594515|ref|YP_003900832.1| - 0.063 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease NAD_binding_2 PF03446.10 gi|307594516|ref|YP_003900833.1| - 1.7e-54 184.0 0.1 2.9e-54 183.3 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|307594516|ref|YP_003900833.1| - 4.9e-35 120.2 0.8 6.8e-35 119.7 0.5 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|307594516|ref|YP_003900833.1| - 2.2e-08 34.4 0.2 8.6e-08 32.5 0.0 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|307594516|ref|YP_003900833.1| - 1.9e-07 30.4 0.0 6.9e-07 28.5 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|307594516|ref|YP_003900833.1| - 7.6e-05 22.8 0.0 0.00016 21.8 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.7 gi|307594516|ref|YP_003900833.1| - 0.00016 21.0 0.0 0.00032 20.1 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Rossmann-like PF10727.4 gi|307594516|ref|YP_003900833.1| - 0.0011 18.6 0.0 0.0025 17.5 0.0 1.6 1 0 0 1 1 1 1 Rossmann-like domain 3HCDH_N PF02737.13 gi|307594516|ref|YP_003900833.1| - 0.0012 18.5 0.1 0.0074 15.9 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|307594516|ref|YP_003900833.1| - 0.0016 17.8 0.0 0.0026 17.1 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DapB_N PF01113.15 gi|307594516|ref|YP_003900833.1| - 0.01 15.7 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|307594516|ref|YP_003900833.1| - 0.027 14.9 0.0 0.052 14.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold MoCF_biosynth PF00994.19 gi|307594517|ref|YP_003900834.1| - 9.7e-21 73.6 0.1 1.8e-20 72.8 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF3391 PF11871.3 gi|307594517|ref|YP_003900834.1| - 0.04 14.1 0.0 0.082 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) DRTGG PF07085.7 gi|307594517|ref|YP_003900834.1| - 0.073 12.6 0.2 0.4 10.3 0.1 2.3 1 1 1 2 2 2 0 DRTGG domain HEPN PF05168.9 gi|307594518|ref|YP_003900835.1| - 6.8e-10 38.8 0.1 8.2e-10 38.5 0.1 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|307594519|ref|YP_003900836.1| - 4.5e-07 30.1 0.4 5.8e-07 29.7 0.3 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain PaREP1 PF05942.6 gi|307594520|ref|YP_003900837.1| - 4.5e-32 110.3 2.7 4.5e-32 110.3 1.9 1.5 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|307594520|ref|YP_003900837.1| - 0.0098 15.7 3.4 0.025 14.4 1.6 2.4 2 1 0 2 2 2 1 HEPN domain UPF0278 PF08745.6 gi|307594520|ref|YP_003900837.1| - 0.051 12.8 1.2 0.051 12.8 0.4 1.4 2 0 0 2 2 2 0 UPF0278 family DUF4398 PF14346.1 gi|307594520|ref|YP_003900837.1| - 0.15 12.1 2.0 0.33 11.0 1.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) RHH_1 PF01402.16 gi|307594520|ref|YP_003900837.1| - 0.94 9.4 4.3 0.37 10.7 0.6 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family AFOR_N PF02730.10 gi|307594521|ref|YP_003900838.1| - 8.2e-71 237.5 0.3 9.3e-71 237.3 0.2 1.0 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PaREP1 PF05942.6 gi|307594522|ref|YP_003900839.1| - 4.1e-28 97.5 0.3 4.9e-28 97.3 0.2 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|307594522|ref|YP_003900839.1| - 0.12 12.2 1.8 0.38 10.6 1.2 1.9 1 1 0 1 1 1 0 HEPN domain PaREP1 PF05942.6 gi|307594523|ref|YP_003900840.1| - 5.5e-32 110.0 3.1 8e-32 109.5 2.1 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|307594523|ref|YP_003900840.1| - 0.00014 21.5 1.2 0.00045 19.8 0.1 2.3 2 1 1 3 3 3 1 Protein of unknown function (DUF357) DUF4398 PF14346.1 gi|307594523|ref|YP_003900840.1| - 0.00098 19.1 2.1 0.0014 18.6 1.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) HEPN PF05168.9 gi|307594523|ref|YP_003900840.1| - 0.0016 18.2 1.4 0.0035 17.2 1.0 1.6 1 0 0 1 1 1 1 HEPN domain SusD PF07980.6 gi|307594523|ref|YP_003900840.1| - 0.1 12.0 0.3 0.12 11.8 0.2 1.1 1 0 0 1 1 1 0 SusD family 2TM PF13239.1 gi|307594523|ref|YP_003900840.1| - 0.15 12.1 0.5 0.28 11.2 0.3 1.5 1 0 0 1 1 1 0 2TM domain PaREP1 PF05942.6 gi|307594524|ref|YP_003900841.1| - 2.3e-21 75.7 1.3 3.2e-21 75.3 0.9 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Bcl-2 PF00452.14 gi|307594524|ref|YP_003900841.1| - 0.12 12.4 0.1 13 5.9 0.0 2.4 2 1 0 2 2 2 0 Apoptosis regulator proteins, Bcl-2 family MR_MLE_C PF13378.1 gi|307594525|ref|YP_003900842.1| - 5.8e-24 84.2 0.0 7.2e-23 80.6 0.0 2.3 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|307594525|ref|YP_003900842.1| - 1e-19 70.8 0.0 2.7e-19 69.4 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|307594525|ref|YP_003900842.1| - 1.4e-17 63.7 0.2 9.3e-17 61.1 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Enolase_C PF00113.17 gi|307594525|ref|YP_003900842.1| - 0.063 12.2 0.0 0.095 11.6 0.0 1.3 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain Ribosomal_S5 PF00333.15 gi|307594525|ref|YP_003900842.1| - 0.079 12.7 0.5 5 6.9 0.0 2.7 2 1 0 2 2 2 0 Ribosomal protein S5, N-terminal domain Tetradecapep PF08187.6 gi|307594525|ref|YP_003900842.1| - 0.11 12.3 0.3 0.32 10.8 0.2 1.8 1 0 0 1 1 1 0 Myoactive tetradecapeptides family ADH_N PF08240.7 gi|307594526|ref|YP_003900843.1| - 8.8e-15 54.4 0.4 2.1e-14 53.1 0.3 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|307594526|ref|YP_003900843.1| - 4.1e-11 42.5 0.1 8.7e-11 41.4 0.1 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|307594526|ref|YP_003900843.1| - 1.9e-06 28.0 0.0 3.8e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.16 gi|307594526|ref|YP_003900843.1| - 0.013 15.3 0.1 0.032 14.0 0.0 1.5 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FAD_binding_3 PF01494.14 gi|307594526|ref|YP_003900843.1| - 0.033 13.2 0.1 0.054 12.5 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain DapB_N PF01113.15 gi|307594526|ref|YP_003900843.1| - 0.065 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AlaDh_PNT_C PF01262.16 gi|307594526|ref|YP_003900843.1| - 0.08 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain POR_N PF01855.14 gi|307594527|ref|YP_003900844.1| - 1.5e-56 191.5 0.0 2.1e-56 191.0 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|307594527|ref|YP_003900844.1| - 8.2e-34 116.9 0.0 2.5e-33 115.4 0.0 1.8 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|307594527|ref|YP_003900844.1| - 1.7e-07 31.1 0.1 7.2e-07 29.1 0.0 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|307594527|ref|YP_003900844.1| - 4.2e-06 26.3 0.5 9.6e-06 25.1 0.3 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ADH_zinc_N PF00107.21 gi|307594528|ref|YP_003900845.1| - 2.8e-28 98.0 0.2 4.7e-28 97.3 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|307594528|ref|YP_003900845.1| - 1.3e-23 82.8 0.0 4.1e-23 81.2 0.0 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|307594528|ref|YP_003900845.1| - 3.1e-14 53.9 0.0 6.1e-14 53.0 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|307594528|ref|YP_003900845.1| - 1.5e-05 25.0 1.2 2.5e-05 24.3 0.8 1.3 1 0 0 1 1 1 1 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|307594528|ref|YP_003900845.1| - 0.00052 19.6 0.5 0.00094 18.7 0.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.20 gi|307594528|ref|YP_003900845.1| - 0.0049 16.8 2.4 0.011 15.6 1.7 1.6 1 1 0 1 1 1 1 short chain dehydrogenase ELFV_dehydrog PF00208.16 gi|307594528|ref|YP_003900845.1| - 0.0069 15.9 0.2 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Epimerase PF01370.16 gi|307594528|ref|YP_003900845.1| - 0.0077 15.6 0.1 0.012 15.0 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Methyltransf_18 PF12847.2 gi|307594528|ref|YP_003900845.1| - 0.0089 16.5 0.0 0.016 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain THF_DHG_CYH_C PF02882.14 gi|307594528|ref|YP_003900845.1| - 0.02 13.9 0.7 0.18 10.8 0.4 2.1 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NmrA PF05368.8 gi|307594528|ref|YP_003900845.1| - 0.021 14.0 0.2 0.028 13.6 0.2 1.3 1 0 0 1 1 1 0 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|307594528|ref|YP_003900845.1| - 0.021 13.9 0.1 0.034 13.2 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E1-N PF14463.1 gi|307594528|ref|YP_003900845.1| - 0.039 13.5 1.3 0.053 13.1 0.2 1.7 2 0 0 2 2 2 0 E1 N-terminal domain CPSase_L_chain PF00289.17 gi|307594528|ref|YP_003900845.1| - 0.047 13.8 0.0 0.085 12.9 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain TrkA_N PF02254.13 gi|307594528|ref|YP_003900845.1| - 0.07 13.1 0.0 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain KR PF08659.5 gi|307594528|ref|YP_003900845.1| - 0.11 12.0 0.1 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 KR domain Eno-Rase_NADH_b PF12242.3 gi|307594528|ref|YP_003900845.1| - 0.15 11.9 1.2 0.32 10.8 0.8 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DapB_N PF01113.15 gi|307594528|ref|YP_003900845.1| - 0.16 11.8 1.2 0.31 10.9 0.4 1.7 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus HK PF02110.10 gi|307594529|ref|YP_003900846.1| - 1.8e-86 289.3 0.6 2.1e-86 289.1 0.4 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|307594529|ref|YP_003900846.1| - 9e-07 28.4 0.2 1.1e-06 28.1 0.1 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|307594529|ref|YP_003900846.1| - 0.00018 20.8 0.0 0.00023 20.4 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase TroA PF01297.12 gi|307594529|ref|YP_003900846.1| - 0.091 11.9 0.1 0.92 8.7 0.0 2.0 2 0 0 2 2 2 0 Periplasmic solute binding protein family DUF1626 PF07788.6 gi|307594530|ref|YP_003900847.1| - 1.3e-27 95.3 0.6 2.5e-27 94.4 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF972 PF06156.8 gi|307594530|ref|YP_003900847.1| - 1.7e-05 25.1 11.8 0.016 15.5 4.8 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF972) DUF1875 PF08961.5 gi|307594530|ref|YP_003900847.1| - 6.9e-05 22.2 1.0 6.9e-05 22.2 0.7 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF1875) V_ATPase_I PF01496.14 gi|307594530|ref|YP_003900847.1| - 0.00051 18.0 4.4 0.0006 17.8 3.1 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF3782 PF12644.2 gi|307594530|ref|YP_003900847.1| - 0.00077 19.2 23.0 0.0061 16.3 15.9 2.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) DUF948 PF06103.6 gi|307594530|ref|YP_003900847.1| - 0.0011 18.8 0.7 0.14 12.0 0.1 3.0 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.7 gi|307594530|ref|YP_003900847.1| - 0.0053 16.5 1.0 5 6.9 0.8 2.9 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus MutS_III PF05192.13 gi|307594530|ref|YP_003900847.1| - 0.0059 16.4 0.3 0.12 12.1 0.2 2.3 1 1 0 1 1 1 1 MutS domain III Scaffolding_pro PF11418.3 gi|307594530|ref|YP_003900847.1| - 0.025 14.8 2.8 1.7 9.0 0.0 2.4 1 1 1 2 2 2 0 Phi29 scaffolding protein Taxilin PF09728.4 gi|307594530|ref|YP_003900847.1| - 0.033 13.2 15.6 0.13 11.3 8.1 2.0 1 1 1 2 2 2 0 Myosin-like coiled-coil protein CCDC155 PF14662.1 gi|307594530|ref|YP_003900847.1| - 0.041 13.4 17.0 0.077 12.5 9.8 2.0 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 ADIP PF11559.3 gi|307594530|ref|YP_003900847.1| - 0.054 13.3 13.6 0.047 13.5 6.5 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Nnf1 PF03980.9 gi|307594530|ref|YP_003900847.1| - 0.055 13.4 8.7 0.094 12.7 0.1 3.5 2 2 2 4 4 4 0 Nnf1 DUF4618 PF15397.1 gi|307594530|ref|YP_003900847.1| - 0.064 12.5 9.8 1.6 7.9 5.9 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4618) 4HB_MCP_1 PF12729.2 gi|307594530|ref|YP_003900847.1| - 0.064 12.6 4.2 0.15 11.4 2.9 1.6 1 1 0 1 1 1 0 Four helix bundle sensory module for signal transduction Tropomyosin PF00261.15 gi|307594530|ref|YP_003900847.1| - 0.089 11.8 18.7 0.13 11.3 10.1 2.1 1 1 1 2 2 2 0 Tropomyosin Reo_sigmaC PF04582.7 gi|307594530|ref|YP_003900847.1| - 0.1 11.7 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Syntaxin PF00804.20 gi|307594530|ref|YP_003900847.1| - 0.13 12.3 2.5 3.7 7.7 1.0 2.3 1 1 1 2 2 2 0 Syntaxin PTRF_SDPR PF15237.1 gi|307594530|ref|YP_003900847.1| - 0.16 11.3 6.1 0.12 11.8 2.6 1.8 1 1 0 1 1 1 0 PTRF/SDPR family Transcrip_act PF04949.8 gi|307594530|ref|YP_003900847.1| - 0.21 11.2 10.1 0.11 12.1 3.2 2.2 1 1 1 2 2 2 0 Transcriptional activator BRE1 PF08647.6 gi|307594530|ref|YP_003900847.1| - 0.21 11.5 10.1 2.4 8.1 2.8 2.4 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase Rab5-bind PF09311.6 gi|307594530|ref|YP_003900847.1| - 0.24 11.2 13.9 0.41 10.5 9.6 1.3 1 0 0 1 1 1 0 Rabaptin-like protein APG6 PF04111.7 gi|307594530|ref|YP_003900847.1| - 0.26 10.3 19.9 0.83 8.6 13.8 1.8 1 1 0 1 1 1 0 Autophagy protein Apg6 IncA PF04156.9 gi|307594530|ref|YP_003900847.1| - 0.39 10.2 20.0 1.6 8.2 0.8 2.2 1 1 1 2 2 2 0 IncA protein Syntaxin_2 PF14523.1 gi|307594530|ref|YP_003900847.1| - 0.42 10.6 5.2 5.2 7.1 3.4 2.4 2 0 0 2 2 2 0 Syntaxin-like protein DUF3632 PF12311.3 gi|307594530|ref|YP_003900847.1| - 0.43 10.3 16.3 0.34 10.7 1.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3632) GAS PF13851.1 gi|307594530|ref|YP_003900847.1| - 0.53 9.4 18.2 0.42 9.7 10.7 1.8 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF1319 PF07028.6 gi|307594530|ref|YP_003900847.1| - 0.6 10.3 8.9 3.2 7.9 1.6 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) TMF_TATA_bd PF12325.3 gi|307594530|ref|YP_003900847.1| - 0.6 9.8 14.9 0.47 10.1 8.3 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding ERM PF00769.14 gi|307594530|ref|YP_003900847.1| - 0.62 9.5 19.4 3 7.3 13.5 1.8 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Snapin_Pallidin PF14712.1 gi|307594530|ref|YP_003900847.1| - 0.71 10.2 7.4 19 5.6 2.0 3.4 1 1 1 2 2 2 0 Snapin/Pallidin DUF1843 PF08898.5 gi|307594530|ref|YP_003900847.1| - 0.73 9.9 3.6 6.6 6.8 0.6 3.0 3 1 0 3 3 2 0 Domain of unknown function (DUF1843) Atg14 PF10186.4 gi|307594530|ref|YP_003900847.1| - 0.75 8.6 12.0 1.2 8.0 8.3 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Fib_alpha PF08702.5 gi|307594530|ref|YP_003900847.1| - 0.87 9.6 5.6 0.87 9.7 2.3 1.9 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Exonuc_VII_L PF02601.10 gi|307594530|ref|YP_003900847.1| - 0.88 8.7 7.4 1.2 8.2 5.1 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DivIC PF04977.10 gi|307594530|ref|YP_003900847.1| - 1 8.8 16.1 0.87 9.1 0.3 3.2 2 1 1 3 3 3 0 Septum formation initiator Seryl_tRNA_N PF02403.17 gi|307594530|ref|YP_003900847.1| - 1.2 9.2 12.7 1.2 9.1 6.0 2.4 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF745 PF05335.8 gi|307594530|ref|YP_003900847.1| - 1.4 8.3 5.6 2.4 7.6 3.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF745) UPF0449 PF15136.1 gi|307594530|ref|YP_003900847.1| - 1.4 9.1 10.3 3.4 7.9 0.1 3.0 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 HALZ PF02183.13 gi|307594530|ref|YP_003900847.1| - 1.7 8.4 14.0 5.8 6.7 0.0 4.4 3 1 2 5 5 4 0 Homeobox associated leucine zipper zf-C4H2 PF10146.4 gi|307594530|ref|YP_003900847.1| - 1.8 8.5 8.6 5 7.0 6.0 1.7 1 1 0 1 1 1 0 Zinc finger-containing protein DUF2205 PF10224.4 gi|307594530|ref|YP_003900847.1| - 2.1 7.9 9.9 1.5 8.4 2.6 3.3 2 1 2 4 4 3 0 Predicted coiled-coil protein (DUF2205) BLOC1_2 PF10046.4 gi|307594530|ref|YP_003900847.1| - 2.6 8.2 8.7 6.1 7.0 1.3 3.1 1 1 3 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF904 PF06005.7 gi|307594530|ref|YP_003900847.1| - 2.7 8.3 27.1 0.33 11.2 5.8 3.3 1 1 1 2 2 1 0 Protein of unknown function (DUF904) Laminin_II PF06009.7 gi|307594530|ref|YP_003900847.1| - 3.3 7.4 5.7 3.6 7.3 2.9 1.8 1 1 1 2 2 2 0 Laminin Domain II TMF_DNA_bd PF12329.3 gi|307594530|ref|YP_003900847.1| - 3.4 7.5 14.2 1.3 8.8 5.3 2.7 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF342 PF03961.8 gi|307594530|ref|YP_003900847.1| - 4.8 5.4 7.5 9.8 4.4 5.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF342) TBPIP PF07106.8 gi|307594530|ref|YP_003900847.1| - 5.3 6.5 11.7 1.2e+02 2.1 1.6 2.3 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GvpK PF05121.7 gi|307594530|ref|YP_003900847.1| - 5.4 6.9 8.5 4.1 7.3 0.1 2.9 1 1 2 3 3 3 0 Gas vesicle protein K UCR_UQCRX_QCR9 PF05365.7 gi|307594530|ref|YP_003900847.1| - 5.8 6.6 15.3 9.2 5.9 0.1 4.2 4 0 0 4 4 4 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DivIVA PF05103.8 gi|307594530|ref|YP_003900847.1| - 5.8 6.9 12.1 1.7e+02 2.1 8.4 2.5 1 1 0 1 1 1 0 DivIVA protein Mod_r PF07200.8 gi|307594530|ref|YP_003900847.1| - 6.1 6.7 14.8 1.3 8.9 3.6 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF1515 PF07439.6 gi|307594530|ref|YP_003900847.1| - 7 6.5 6.5 2.5 7.9 0.4 2.8 2 1 0 3 3 2 0 Protein of unknown function (DUF1515) CENP-Q PF13094.1 gi|307594530|ref|YP_003900847.1| - 8.4 6.3 11.6 21 5.1 8.0 1.7 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit IncA PF04156.9 gi|307594531|ref|YP_003900848.1| - 6.5e-07 29.1 0.1 7.7e-07 28.9 0.0 1.0 1 0 0 1 1 1 1 IncA protein DUF2254 PF10011.4 gi|307594531|ref|YP_003900848.1| - 0.007 14.8 0.8 0.012 14.0 0.5 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2254) PIG-P PF08510.7 gi|307594531|ref|YP_003900848.1| - 0.014 15.0 2.0 0.086 12.4 0.0 2.0 1 1 1 2 2 2 0 PIG-P Cytochrom_B_C PF00032.12 gi|307594531|ref|YP_003900848.1| - 0.018 15.2 0.3 0.023 14.9 0.2 1.1 1 0 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD SHR3_chaperone PF08229.6 gi|307594531|ref|YP_003900848.1| - 0.024 13.5 0.2 0.038 12.9 0.2 1.3 1 1 0 1 1 1 0 ER membrane protein SH3 DUF4131 PF13567.1 gi|307594531|ref|YP_003900848.1| - 0.033 13.6 0.0 0.037 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF412 PF04217.8 gi|307594531|ref|YP_003900848.1| - 0.045 13.5 0.2 0.052 13.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function, DUF412 Orbi_VP5 PF00901.12 gi|307594531|ref|YP_003900848.1| - 0.046 11.9 0.8 0.053 11.7 0.6 1.0 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP5 tRNA_anti-like PF12869.2 gi|307594531|ref|YP_003900848.1| - 0.17 11.3 1.6 0.58 9.6 0.0 1.9 1 1 1 2 2 2 0 tRNA_anti-like DUF3784 PF12650.2 gi|307594531|ref|YP_003900848.1| - 0.19 11.7 6.9 0.33 10.9 4.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) T2SM PF04612.7 gi|307594531|ref|YP_003900848.1| - 0.2 11.4 3.0 0.86 9.3 0.0 2.0 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M OppC_N PF12911.2 gi|307594531|ref|YP_003900848.1| - 0.23 10.8 5.5 0.41 10.0 0.6 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF4181 PF13789.1 gi|307594531|ref|YP_003900848.1| - 1 9.3 5.8 1.4 8.8 4.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4181) 7TM_GPCR_Srx PF10328.4 gi|307594531|ref|YP_003900848.1| - 1.3 8.0 5.9 1.8 7.5 4.1 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srx DUF417 PF04224.7 gi|307594531|ref|YP_003900848.1| - 2.8 7.2 7.4 22 4.3 5.1 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF417 AAA_17 PF13207.1 gi|307594532|ref|YP_003900849.1| - 3.7e-06 27.7 0.0 1.6e-05 25.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|307594532|ref|YP_003900849.1| - 4.3e-05 23.8 0.0 0.00064 20.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|307594532|ref|YP_003900849.1| - 0.00075 19.4 0.0 0.0073 16.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|307594532|ref|YP_003900849.1| - 0.00077 19.4 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|307594532|ref|YP_003900849.1| - 0.0008 19.6 0.0 0.0023 18.1 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|307594532|ref|YP_003900849.1| - 0.00099 18.8 0.0 0.0049 16.5 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.1 gi|307594532|ref|YP_003900849.1| - 0.0019 18.0 0.1 0.0053 16.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|307594532|ref|YP_003900849.1| - 0.0026 17.4 0.0 0.0064 16.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|307594532|ref|YP_003900849.1| - 0.0051 17.1 0.0 0.0082 16.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_10 PF12846.2 gi|307594532|ref|YP_003900849.1| - 0.0062 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain IstB_IS21 PF01695.12 gi|307594532|ref|YP_003900849.1| - 0.0064 15.9 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|307594532|ref|YP_003900849.1| - 0.0065 16.6 0.0 0.026 14.6 0.0 1.9 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|307594532|ref|YP_003900849.1| - 0.0067 16.5 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 RNA helicase MobB PF03205.9 gi|307594532|ref|YP_003900849.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|307594532|ref|YP_003900849.1| - 0.014 14.5 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.1 gi|307594532|ref|YP_003900849.1| - 0.018 14.7 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain Thymidylate_kin PF02223.12 gi|307594532|ref|YP_003900849.1| - 0.019 14.3 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase SKI PF01202.17 gi|307594532|ref|YP_003900849.1| - 0.024 14.5 0.7 0.29 11.0 0.0 2.4 2 1 1 3 3 3 0 Shikimate kinase AAA_25 PF13481.1 gi|307594532|ref|YP_003900849.1| - 0.028 13.7 0.1 0.1 11.9 0.0 1.9 2 1 1 3 3 2 0 AAA domain AAA_29 PF13555.1 gi|307594532|ref|YP_003900849.1| - 0.037 13.5 0.0 0.081 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|307594532|ref|YP_003900849.1| - 0.057 13.3 0.0 0.095 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|307594532|ref|YP_003900849.1| - 0.06 11.8 0.0 0.077 11.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|307594532|ref|YP_003900849.1| - 0.099 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_14 PF13173.1 gi|307594532|ref|YP_003900849.1| - 0.11 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|307594532|ref|YP_003900849.1| - 0.12 11.4 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|307594532|ref|YP_003900849.1| - 0.15 11.1 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus DUF972 PF06156.8 gi|307594533|ref|YP_003900850.1| - 2e-08 34.5 16.6 0.0045 17.3 1.7 4.0 1 1 3 4 4 4 4 Protein of unknown function (DUF972) CCDC155 PF14662.1 gi|307594533|ref|YP_003900850.1| - 3.2e-07 30.1 19.3 0.0005 19.7 9.1 2.2 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 Hemerythrin PF01814.18 gi|307594533|ref|YP_003900850.1| - 2.5e-06 27.6 3.9 0.00037 20.6 0.5 2.7 2 1 1 3 3 2 2 Hemerythrin HHE cation binding domain APG6 PF04111.7 gi|307594533|ref|YP_003900850.1| - 3.2e-06 26.4 23.2 0.0011 18.0 4.7 2.1 1 1 1 2 2 2 2 Autophagy protein Apg6 DUF948 PF06103.6 gi|307594533|ref|YP_003900850.1| - 7.9e-06 25.6 1.1 0.13 12.1 0.2 3.8 1 1 3 4 4 4 1 Bacterial protein of unknown function (DUF948) DUF1875 PF08961.5 gi|307594533|ref|YP_003900850.1| - 0.0001 21.7 1.6 0.0001 21.7 1.1 2.6 1 1 2 3 3 3 1 Domain of unknown function (DUF1875) Dor1 PF04124.7 gi|307594533|ref|YP_003900850.1| - 0.00029 19.4 8.6 0.0019 16.7 1.1 3.4 2 1 2 4 4 4 1 Dor1-like family zf-C4H2 PF10146.4 gi|307594533|ref|YP_003900850.1| - 0.00063 19.8 12.3 0.019 15.0 5.9 2.3 1 1 1 2 2 2 2 Zinc finger-containing protein Mod_r PF07200.8 gi|307594533|ref|YP_003900850.1| - 0.0011 18.9 13.2 0.5 10.2 4.9 2.8 1 1 1 2 2 2 2 Modifier of rudimentary (Mod(r)) protein ERM PF00769.14 gi|307594533|ref|YP_003900850.1| - 0.0018 17.8 18.9 0.29 10.6 9.0 2.5 1 1 2 3 3 3 2 Ezrin/radixin/moesin family 4HB_MCP_1 PF12729.2 gi|307594533|ref|YP_003900850.1| - 0.0019 17.5 1.4 0.0019 17.5 1.0 2.4 1 1 0 2 2 2 1 Four helix bundle sensory module for signal transduction ADIP PF11559.3 gi|307594533|ref|YP_003900850.1| - 0.002 18.0 15.9 0.0097 15.8 3.5 2.3 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding HALZ PF02183.13 gi|307594533|ref|YP_003900850.1| - 0.0035 17.0 12.8 5.5 6.7 0.1 5.7 2 1 5 7 7 6 0 Homeobox associated leucine zipper EzrA PF06160.7 gi|307594533|ref|YP_003900850.1| - 0.0037 15.5 10.6 0.0081 14.3 7.1 1.6 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Reo_sigmaC PF04582.7 gi|307594533|ref|YP_003900850.1| - 0.0045 16.2 0.0 0.19 10.9 0.0 2.3 1 1 2 3 3 3 1 Reovirus sigma C capsid protein Bacillus_HBL PF05791.6 gi|307594533|ref|YP_003900850.1| - 0.0057 16.0 1.9 0.22 10.8 0.7 2.3 2 0 0 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) Baculo_PEP_C PF04513.7 gi|307594533|ref|YP_003900850.1| - 0.0072 16.1 3.1 0.45 10.3 1.4 2.9 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Cast PF10174.4 gi|307594533|ref|YP_003900850.1| - 0.0077 14.3 17.1 0.0079 14.3 9.4 1.9 1 1 1 2 2 2 1 RIM-binding protein of the cytomatrix active zone DUF904 PF06005.7 gi|307594533|ref|YP_003900850.1| - 0.0092 16.2 31.8 4.6 7.6 6.8 3.6 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Snapin_Pallidin PF14712.1 gi|307594533|ref|YP_003900850.1| - 0.0092 16.2 6.9 5.6 7.3 0.2 3.6 1 1 2 3 3 3 0 Snapin/Pallidin Syntaxin PF00804.20 gi|307594533|ref|YP_003900850.1| - 0.0093 16.1 6.3 1.4 9.0 1.7 2.9 1 1 2 3 3 3 1 Syntaxin DivIC PF04977.10 gi|307594533|ref|YP_003900850.1| - 0.01 15.2 22.1 0.37 10.2 2.0 4.3 2 1 2 4 4 4 0 Septum formation initiator TMF_DNA_bd PF12329.3 gi|307594533|ref|YP_003900850.1| - 0.011 15.5 2.3 0.011 15.5 1.6 3.4 2 1 0 3 3 3 0 TATA element modulatory factor 1 DNA binding BicD PF09730.4 gi|307594533|ref|YP_003900850.1| - 0.011 14.0 9.4 0.017 13.5 6.5 1.2 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D DUF2353 PF09789.4 gi|307594533|ref|YP_003900850.1| - 0.015 14.6 10.6 0.024 13.8 7.3 1.4 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Sec34 PF04136.10 gi|307594533|ref|YP_003900850.1| - 0.018 14.7 2.7 0.084 12.5 0.2 2.3 1 1 0 2 2 2 0 Sec34-like family CENP-F_leu_zip PF10473.4 gi|307594533|ref|YP_003900850.1| - 0.018 14.8 19.2 0.28 11.0 3.3 2.7 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MutS_III PF05192.13 gi|307594533|ref|YP_003900850.1| - 0.019 14.7 0.4 0.045 13.5 0.3 1.8 1 1 0 1 1 1 0 MutS domain III V_ATPase_I PF01496.14 gi|307594533|ref|YP_003900850.1| - 0.02 12.7 12.6 0.053 11.3 2.8 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF2935 PF11155.3 gi|307594533|ref|YP_003900850.1| - 0.02 14.9 1.7 4 7.5 0.2 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF2935) IncA PF04156.9 gi|307594533|ref|YP_003900850.1| - 0.023 14.3 21.4 0.96 9.0 13.9 2.3 1 1 1 2 2 2 0 IncA protein TMF_TATA_bd PF12325.3 gi|307594533|ref|YP_003900850.1| - 0.024 14.3 18.5 0.053 13.2 5.8 2.7 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding bZIP_1 PF00170.16 gi|307594533|ref|YP_003900850.1| - 0.024 14.5 16.8 1.7 8.6 0.2 4.4 1 1 4 5 5 5 0 bZIP transcription factor RmuC PF02646.11 gi|307594533|ref|YP_003900850.1| - 0.024 13.4 11.9 0.035 12.9 1.3 3.0 1 1 3 4 4 4 0 RmuC family Nnf1 PF03980.9 gi|307594533|ref|YP_003900850.1| - 0.025 14.5 12.5 0.1 12.5 0.1 4.8 2 2 4 6 6 5 0 Nnf1 GAS PF13851.1 gi|307594533|ref|YP_003900850.1| - 0.031 13.4 18.7 0.21 10.7 4.3 2.9 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding PTRF_SDPR PF15237.1 gi|307594533|ref|YP_003900850.1| - 0.037 13.4 8.9 0.083 12.2 2.0 2.6 1 1 2 3 3 3 0 PTRF/SDPR family BRE1 PF08647.6 gi|307594533|ref|YP_003900850.1| - 0.038 13.9 7.9 0.93 9.5 1.2 2.4 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase Scaffolding_pro PF11418.3 gi|307594533|ref|YP_003900850.1| - 0.045 14.0 1.7 1.5 9.2 0.0 2.9 1 1 3 4 4 3 0 Phi29 scaffolding protein Prominin PF05478.6 gi|307594533|ref|YP_003900850.1| - 0.045 11.2 2.8 0.087 10.3 2.0 1.5 1 1 0 1 1 1 0 Prominin TBPIP PF07106.8 gi|307594533|ref|YP_003900850.1| - 0.051 13.1 17.2 0.19 11.2 3.0 2.6 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) COG5 PF10392.4 gi|307594533|ref|YP_003900850.1| - 0.055 13.4 4.9 1.4 8.8 0.7 3.3 1 1 2 3 3 3 0 Golgi transport complex subunit 5 BLOC1_2 PF10046.4 gi|307594533|ref|YP_003900850.1| - 0.059 13.5 12.0 0.76 9.9 0.6 3.8 2 1 4 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|307594533|ref|YP_003900850.1| - 0.064 13.0 6.8 3.1 7.6 0.3 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Lectin_N PF03954.9 gi|307594533|ref|YP_003900850.1| - 0.067 12.6 0.5 13 5.1 0.0 2.8 2 1 0 2 2 2 0 Hepatic lectin, N-terminal domain Seryl_tRNA_N PF02403.17 gi|307594533|ref|YP_003900850.1| - 0.069 13.1 16.9 0.039 13.9 4.8 2.7 2 1 1 3 3 2 0 Seryl-tRNA synthetase N-terminal domain CENP-Q PF13094.1 gi|307594533|ref|YP_003900850.1| - 0.079 12.9 11.3 0.38 10.7 2.9 2.2 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF1319 PF07028.6 gi|307594533|ref|YP_003900850.1| - 0.084 13.0 11.7 1.7 8.8 0.7 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1319) DegS PF05384.6 gi|307594533|ref|YP_003900850.1| - 0.1 11.7 11.1 0.44 9.7 1.3 2.8 1 1 2 3 3 3 0 Sensor protein DegS Laminin_II PF06009.7 gi|307594533|ref|YP_003900850.1| - 0.12 12.1 9.2 2.6 7.8 2.6 2.5 1 1 1 2 2 2 0 Laminin Domain II DUF2205 PF10224.4 gi|307594533|ref|YP_003900850.1| - 0.13 11.8 17.6 0.94 9.0 1.1 4.1 1 1 4 5 5 5 0 Predicted coiled-coil protein (DUF2205) Taxilin PF09728.4 gi|307594533|ref|YP_003900850.1| - 0.14 11.2 14.3 0.25 10.3 9.9 1.4 1 1 0 1 1 1 0 Myosin-like coiled-coil protein MCPsignal PF00015.16 gi|307594533|ref|YP_003900850.1| - 0.15 11.6 2.0 0.62 9.5 0.1 2.4 2 1 1 3 3 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FUSC PF04632.7 gi|307594533|ref|YP_003900850.1| - 0.15 10.4 1.2 0.25 9.7 0.9 1.4 1 0 0 1 1 1 0 Fusaric acid resistance protein family TelA PF05816.6 gi|307594533|ref|YP_003900850.1| - 0.15 10.7 7.9 1.3 7.6 0.4 3.0 1 1 2 3 3 3 0 Toxic anion resistance protein (TelA) Laminin_I PF06008.9 gi|307594533|ref|YP_003900850.1| - 0.18 11.1 14.7 0.8 8.9 10.2 1.9 1 1 0 1 1 1 0 Laminin Domain I AAA_13 PF13166.1 gi|307594533|ref|YP_003900850.1| - 0.19 10.1 14.0 0.2 10.0 7.9 1.8 1 1 0 1 1 1 0 AAA domain DivIVA PF05103.8 gi|307594533|ref|YP_003900850.1| - 0.2 11.6 14.4 1.4 8.9 0.3 4.1 1 1 3 4 4 4 0 DivIVA protein UPF0449 PF15136.1 gi|307594533|ref|YP_003900850.1| - 0.25 11.5 14.7 3.9 7.7 0.1 4.0 2 1 2 4 4 3 0 Uncharacterised protein family UPF0449 ApoLp-III PF07464.6 gi|307594533|ref|YP_003900850.1| - 0.27 11.2 6.2 1.7 8.6 0.8 2.9 2 1 0 3 3 2 0 Apolipophorin-III precursor (apoLp-III) DUF342 PF03961.8 gi|307594533|ref|YP_003900850.1| - 0.3 9.4 11.1 0.22 9.8 3.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Myosin_tail_1 PF01576.14 gi|307594533|ref|YP_003900850.1| - 0.38 8.4 20.5 1.6 6.3 14.2 1.7 1 1 0 1 1 1 0 Myosin tail Nup88 PF10168.4 gi|307594533|ref|YP_003900850.1| - 0.41 8.4 10.5 0.63 7.8 7.3 1.3 1 0 0 1 1 1 0 Nuclear pore component bZIP_Maf PF03131.12 gi|307594533|ref|YP_003900850.1| - 0.42 10.9 13.7 3.1 8.1 0.3 4.0 1 1 4 5 5 5 0 bZIP Maf transcription factor DUF4618 PF15397.1 gi|307594533|ref|YP_003900850.1| - 0.54 9.5 16.2 0.43 9.8 3.6 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) FlaC_arch PF05377.6 gi|307594533|ref|YP_003900850.1| - 1.2 9.1 15.4 21 5.0 0.1 5.5 4 2 3 7 7 6 0 Flagella accessory protein C (FlaC) DUF1640 PF07798.6 gi|307594533|ref|YP_003900850.1| - 1.2 9.1 7.4 79 3.2 5.1 3.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Kinesin-relat_1 PF12711.2 gi|307594533|ref|YP_003900850.1| - 1.4 9.4 18.8 3.4 8.1 2.6 3.9 1 1 2 3 3 3 0 Kinesin motor MORN_2 PF07661.8 gi|307594533|ref|YP_003900850.1| - 1.5 9.0 5.2 52 4.3 0.0 4.2 3 1 1 4 4 4 0 MORN repeat variant Cluap1 PF10234.4 gi|307594533|ref|YP_003900850.1| - 1.7 7.7 11.0 0.88 8.7 2.3 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 DASH_Dad3 PF08656.5 gi|307594533|ref|YP_003900850.1| - 1.7 8.3 7.6 8.4 6.1 0.1 3.8 1 1 1 2 2 2 0 DASH complex subunit Dad3 Fib_alpha PF08702.5 gi|307594533|ref|YP_003900850.1| - 2.9 8.0 9.9 0.7 10.0 1.7 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF2968 PF11180.3 gi|307594533|ref|YP_003900850.1| - 3.1 7.1 12.2 9.1 5.6 3.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) Rootletin PF15035.1 gi|307594533|ref|YP_003900850.1| - 4.3 7.2 31.7 18 5.2 5.7 2.3 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion TBCA PF02970.11 gi|307594533|ref|YP_003900850.1| - 4.3 7.4 9.8 5.9 7.0 2.7 2.9 2 1 2 4 4 3 0 Tubulin binding cofactor A Atg14 PF10186.4 gi|307594533|ref|YP_003900850.1| - 5.3 5.8 21.2 2.8 6.7 9.9 2.1 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF641 PF04859.7 gi|307594533|ref|YP_003900850.1| - 5.9 6.6 7.0 1.8 8.3 2.0 2.1 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DUF2312 PF10073.4 gi|307594533|ref|YP_003900850.1| - 6.3 6.2 15.6 14 5.0 0.3 4.6 1 1 3 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2312) Hormone_1 PF00103.15 gi|307594533|ref|YP_003900850.1| - 6.6 6.0 8.8 6.7 5.9 0.6 2.5 1 1 2 3 3 3 0 Somatotropin hormone family Cep57_CLD_2 PF14197.1 gi|307594533|ref|YP_003900850.1| - 6.8 6.7 18.4 17 5.3 4.0 3.3 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DUF4446 PF14584.1 gi|307594533|ref|YP_003900850.1| - 6.8 6.5 7.7 10 5.9 0.7 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Rab5-bind PF09311.6 gi|307594533|ref|YP_003900850.1| - 8.3 6.2 18.8 6.2 6.6 0.8 2.7 1 1 1 2 2 2 0 Rabaptin-like protein CASP_C PF08172.7 gi|307594533|ref|YP_003900850.1| - 8.7 5.2 8.3 14 4.5 3.7 2.5 1 1 1 2 2 2 0 CASP C terminal UCR_UQCRX_QCR9 PF05365.7 gi|307594533|ref|YP_003900850.1| - 9.7 5.9 19.5 10 5.8 0.1 5.3 4 1 2 6 6 5 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like Yip1 PF04893.12 gi|307594534|ref|YP_003900851.1| - 0.0019 17.7 26.1 0.0029 17.1 18.1 1.2 1 0 0 1 1 1 1 Yip1 domain Gag_p10 PF02337.12 gi|307594534|ref|YP_003900851.1| - 0.027 14.2 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 Retroviral GAG p10 protein ABC_tran PF00005.22 gi|307594535|ref|YP_003900852.1| - 3.2e-29 101.9 0.0 4.3e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307594535|ref|YP_003900852.1| - 1.8e-14 54.4 0.0 8.2e-08 32.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|307594535|ref|YP_003900852.1| - 4.6e-06 26.3 0.1 0.06 12.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|307594535|ref|YP_003900852.1| - 2.5e-05 23.6 0.1 0.1 11.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|307594535|ref|YP_003900852.1| - 0.00011 22.0 0.1 0.0015 18.4 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|307594535|ref|YP_003900852.1| - 0.00041 19.8 0.0 0.034 13.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|307594535|ref|YP_003900852.1| - 0.0018 18.2 0.9 0.0045 17.0 0.6 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|307594535|ref|YP_003900852.1| - 0.0031 17.0 0.0 0.0056 16.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|307594535|ref|YP_003900852.1| - 0.0048 17.0 0.4 0.15 12.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|307594535|ref|YP_003900852.1| - 0.0051 17.6 0.8 0.011 16.5 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|307594535|ref|YP_003900852.1| - 0.0058 16.9 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|307594535|ref|YP_003900852.1| - 0.029 14.2 0.4 0.078 12.8 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|307594535|ref|YP_003900852.1| - 0.047 13.9 0.0 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|307594535|ref|YP_003900852.1| - 0.049 13.3 0.0 0.15 11.7 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|307594535|ref|YP_003900852.1| - 0.058 12.5 0.0 0.095 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|307594535|ref|YP_003900852.1| - 0.063 12.9 0.5 0.15 11.6 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.1 gi|307594535|ref|YP_003900852.1| - 0.08 12.5 0.6 0.27 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain Planc_extracel PF07595.7 gi|307594535|ref|YP_003900852.1| - 0.082 12.6 0.2 0.082 12.6 0.1 2.2 3 0 0 3 3 2 0 Planctomycete extracellular AAA_15 PF13175.1 gi|307594535|ref|YP_003900852.1| - 0.095 11.7 0.0 0.59 9.1 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|307594535|ref|YP_003900852.1| - 0.12 11.9 0.0 0.34 10.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|307594535|ref|YP_003900852.1| - 0.15 11.1 0.6 8.3 5.4 0.1 2.2 2 0 0 2 2 2 0 KaiC DUF11 PF01345.13 gi|307594536|ref|YP_003900853.1| - 0.00021 21.2 6.1 0.00036 20.5 0.4 3.6 3 0 0 3 3 3 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|307594536|ref|YP_003900853.1| - 0.0043 16.2 9.6 0.021 14.0 0.1 4.2 3 1 0 3 3 3 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|307594536|ref|YP_003900853.1| - 0.016 15.2 1.4 0.016 15.2 0.9 4.3 3 2 2 5 5 5 0 CARDB NPCBM_assoc PF10633.4 gi|307594536|ref|YP_003900853.1| - 0.15 12.0 1.4 8.4 6.5 0.0 3.9 4 1 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase CcmD PF04995.9 gi|307594536|ref|YP_003900853.1| - 3.7 7.3 7.9 7.3 6.4 0.1 2.6 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) MacB_PCD PF12704.2 gi|307594537|ref|YP_003900854.1| - 5.3e-21 75.2 5.7 5.3e-21 75.2 4.0 3.0 3 0 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|307594537|ref|YP_003900854.1| - 9.6e-16 57.6 17.1 9.6e-16 57.6 11.9 3.3 3 0 0 3 3 3 2 FtsX-like permease family DUF3754 PF12576.3 gi|307594537|ref|YP_003900854.1| - 0.57 9.8 0.0 0.57 9.8 0.0 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3754) Arch_ATPase PF01637.13 gi|307594538|ref|YP_003900855.1| - 1.4e-26 93.6 0.0 2.1e-26 93.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|307594538|ref|YP_003900855.1| - 1.2e-08 34.8 0.0 0.0018 18.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|307594538|ref|YP_003900855.1| - 3e-06 27.3 0.1 3.1e-05 24.0 0.0 2.3 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|307594538|ref|YP_003900855.1| - 2.1e-05 24.6 0.0 0.00032 20.8 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|307594538|ref|YP_003900855.1| - 7.3e-05 23.5 0.3 0.0008 20.2 0.2 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|307594538|ref|YP_003900855.1| - 0.016 15.3 0.0 0.26 11.5 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PilJ PF13675.1 gi|307594538|ref|YP_003900855.1| - 0.085 13.1 0.3 0.24 11.7 0.1 1.8 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term NfeD PF01957.13 gi|307594539|ref|YP_003900856.1| - 0.16 12.1 7.6 1.9 8.6 0.4 2.3 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF202 PF02656.10 gi|307594539|ref|YP_003900856.1| - 1.3 9.2 5.1 3.8 7.7 1.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF1469 PF07332.6 gi|307594539|ref|YP_003900856.1| - 4.9 6.8 11.4 6.8 6.4 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Antitoxin-MazE PF04014.13 gi|307594540|ref|YP_003900857.1| - 3.9e-05 23.2 0.0 0.0016 18.0 0.0 2.5 2 0 0 2 2 2 2 Antidote-toxin recognition MazE DFP PF04127.10 gi|307594541|ref|YP_003900858.1| - 9.3e-42 142.7 0.0 5.6e-41 140.2 0.0 1.9 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|307594541|ref|YP_003900858.1| - 2.5e-28 98.3 0.2 4.8e-28 97.3 0.1 1.5 1 0 0 1 1 1 1 Flavoprotein Sugar_tr PF00083.19 gi|307594542|ref|YP_003900859.1| - 3.6e-30 104.9 35.7 3e-23 82.1 8.2 3.1 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_1 PF07690.11 gi|307594542|ref|YP_003900859.1| - 4e-23 81.6 83.2 9.9e-21 73.8 36.4 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily ETF PF01012.16 gi|307594543|ref|YP_003900860.1| - 5.8e-44 149.7 0.0 1.3e-43 148.6 0.0 1.6 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|307594543|ref|YP_003900860.1| - 2.4e-33 113.5 1.1 5.2e-33 112.5 0.8 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.17 gi|307594543|ref|YP_003900860.1| - 0.016 14.9 0.9 1.6 8.4 0.3 2.8 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ETF PF01012.16 gi|307594544|ref|YP_003900861.1| - 4.4e-30 104.5 0.0 6.1e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Usp PF00582.21 gi|307594544|ref|YP_003900861.1| - 0.067 13.3 0.0 0.25 11.5 0.0 1.9 2 0 0 2 2 2 0 Universal stress protein family Fer4_11 PF13247.1 gi|307594545|ref|YP_003900862.1| - 6e-08 32.4 4.0 7.6e-08 32.1 2.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307594545|ref|YP_003900862.1| - 8.7e-07 28.6 23.0 7.8e-05 22.3 10.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307594545|ref|YP_003900862.1| - 1e-06 28.2 11.7 0.00045 19.9 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|307594545|ref|YP_003900862.1| - 4.1e-06 27.0 11.2 0.0019 18.5 9.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307594545|ref|YP_003900862.1| - 0.00053 19.4 1.7 0.00053 19.4 1.2 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|307594545|ref|YP_003900862.1| - 0.001 19.2 25.0 0.013 15.7 10.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307594545|ref|YP_003900862.1| - 0.0014 18.9 7.3 0.013 15.8 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307594545|ref|YP_003900862.1| - 0.002 17.9 10.9 0.0045 16.8 7.7 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307594545|ref|YP_003900862.1| - 0.0083 16.3 1.3 0.0083 16.3 0.9 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|307594545|ref|YP_003900862.1| - 0.0099 15.7 16.6 0.017 14.9 1.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|307594545|ref|YP_003900862.1| - 0.015 15.2 3.4 0.015 15.2 2.3 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307594545|ref|YP_003900862.1| - 0.06 14.0 1.0 0.06 14.0 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|307594545|ref|YP_003900862.1| - 0.16 12.3 1.7 0.16 12.3 1.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain RLI PF04068.10 gi|307594545|ref|YP_003900862.1| - 0.31 10.6 7.9 0.66 9.6 5.5 1.6 1 1 0 1 1 1 0 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_20 PF14691.1 gi|307594545|ref|YP_003900862.1| - 1.4 8.5 7.0 1.3 8.6 1.2 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|307594545|ref|YP_003900862.1| - 1.7 9.3 18.7 0.19 12.4 3.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DAO PF01266.19 gi|307594546|ref|YP_003900863.1| - 1.9e-13 50.1 6.5 4.3e-07 29.1 0.1 2.7 2 1 2 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|307594546|ref|YP_003900863.1| - 2.9e-12 46.1 1.0 3e-08 32.9 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|307594546|ref|YP_003900863.1| - 1.8e-11 43.5 0.5 2.6e-10 39.7 0.0 2.1 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|307594546|ref|YP_003900863.1| - 2.2e-11 42.8 0.9 8.8e-11 40.8 0.6 1.8 1 1 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|307594546|ref|YP_003900863.1| - 3.9e-10 39.9 0.1 5.9e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|307594546|ref|YP_003900863.1| - 9.4e-09 35.1 0.1 2.4e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|307594546|ref|YP_003900863.1| - 3.2e-08 33.8 0.0 4.9e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|307594546|ref|YP_003900863.1| - 4.1e-08 32.6 0.0 5.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|307594546|ref|YP_003900863.1| - 6.4e-07 28.8 0.1 1e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|307594546|ref|YP_003900863.1| - 2.3e-06 26.7 0.9 5.1e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|307594546|ref|YP_003900863.1| - 6.8e-06 25.2 0.0 9e-06 24.8 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|307594546|ref|YP_003900863.1| - 1.6e-05 24.7 0.2 4.1e-05 23.4 0.1 1.7 1 1 0 1 1 1 1 FAD-NAD(P)-binding Amino_oxidase PF01593.19 gi|307594546|ref|YP_003900863.1| - 5.6e-05 22.3 0.1 0.00015 20.9 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.22 gi|307594546|ref|YP_003900863.1| - 0.0001 22.6 0.3 0.00073 19.8 0.1 2.5 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|307594546|ref|YP_003900863.1| - 0.00016 20.4 0.1 0.13 10.8 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GMC_oxred_N PF00732.14 gi|307594546|ref|YP_003900863.1| - 0.00098 18.3 0.0 0.13 11.3 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase 3HCDH_N PF02737.13 gi|307594546|ref|YP_003900863.1| - 0.01 15.4 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|307594546|ref|YP_003900863.1| - 0.018 15.1 0.0 0.041 13.9 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|307594546|ref|YP_003900863.1| - 0.019 15.1 0.0 0.055 13.7 0.0 1.8 2 0 0 2 2 1 0 Putative NAD(P)-binding TrkA_N PF02254.13 gi|307594546|ref|YP_003900863.1| - 0.048 13.6 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain GDI PF00996.13 gi|307594546|ref|YP_003900863.1| - 0.057 11.7 0.0 0.31 9.2 0.0 1.9 2 0 0 2 2 2 0 GDP dissociation inhibitor Radical_SAM PF04055.16 gi|307594547|ref|YP_003900864.1| - 3.4e-23 82.6 0.0 3.1e-22 79.5 0.0 2.2 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|307594547|ref|YP_003900864.1| - 1.7e-09 37.8 0.1 1e-08 35.3 0.0 2.2 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|307594547|ref|YP_003900864.1| - 3e-09 37.1 0.0 7.8e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|307594547|ref|YP_003900864.1| - 6.9e-08 32.5 0.0 1.6e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|307594547|ref|YP_003900864.1| - 0.00073 18.8 0.0 0.0016 17.7 0.0 1.6 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.14 gi|307594547|ref|YP_003900864.1| - 0.0055 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 HMGL-like B12-binding PF02310.14 gi|307594548|ref|YP_003900865.1| - 1.1e-30 105.9 0.0 9.6e-30 102.9 0.0 2.2 2 1 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.16 gi|307594548|ref|YP_003900865.1| - 1.4e-25 90.4 0.4 1.4e-24 87.1 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|307594548|ref|YP_003900865.1| - 0.0013 18.8 0.1 0.0037 17.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|307594548|ref|YP_003900865.1| - 0.0023 17.9 0.0 0.0071 16.3 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM_N PF08497.5 gi|307594548|ref|YP_003900865.1| - 0.0094 14.9 0.0 6.1 5.6 0.0 3.2 4 0 0 4 4 4 2 Radical SAM N-terminal Peripla_BP_6 PF13458.1 gi|307594548|ref|YP_003900865.1| - 0.09 12.1 0.0 0.23 10.7 0.0 1.6 1 1 0 1 1 1 0 Periplasmic binding protein Response_reg PF00072.19 gi|307594548|ref|YP_003900865.1| - 0.12 12.3 0.0 0.43 10.5 0.0 1.9 2 0 0 2 2 2 0 Response regulator receiver domain Ribosomal_S24e PF01282.14 gi|307594550|ref|YP_003900867.1| - 1.9e-17 62.7 0.2 3.8e-17 61.8 0.1 1.6 1 1 0 1 1 1 1 Ribosomal protein S24e FliG_C PF01706.11 gi|307594550|ref|YP_003900867.1| - 0.079 12.9 1.7 0.49 10.3 0.9 2.0 2 0 0 2 2 2 0 FliG C-terminal domain GYD PF08734.6 gi|307594550|ref|YP_003900867.1| - 0.14 11.8 1.5 0.56 9.9 0.0 2.0 2 0 0 2 2 2 0 GYD domain Spt4 PF06093.8 gi|307594551|ref|YP_003900868.1| - 3.3e-16 58.9 0.4 4.2e-16 58.5 0.3 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger UPF0547 PF10571.4 gi|307594551|ref|YP_003900868.1| - 0.00059 19.4 4.0 0.0009 18.8 2.8 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|307594551|ref|YP_003900868.1| - 0.0014 17.7 4.5 0.0019 17.3 3.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|307594551|ref|YP_003900868.1| - 0.0028 17.4 0.6 0.004 16.9 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|307594551|ref|YP_003900868.1| - 0.0092 15.4 2.3 0.014 14.8 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|307594551|ref|YP_003900868.1| - 0.017 14.3 1.7 0.052 12.8 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|307594551|ref|YP_003900868.1| - 0.032 13.9 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.9 gi|307594551|ref|YP_003900868.1| - 0.1 12.2 3.7 0.61 9.7 0.2 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS Prim_Zn_Ribbon PF08273.7 gi|307594551|ref|YP_003900868.1| - 0.1 12.6 4.1 0.73 9.9 1.0 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-RING_4 PF14570.1 gi|307594551|ref|YP_003900868.1| - 0.13 11.9 1.4 0.2 11.2 1.0 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-P11 PF03854.9 gi|307594551|ref|YP_003900868.1| - 0.13 11.7 0.8 0.27 10.7 0.2 1.7 1 1 1 2 2 2 0 P-11 zinc finger RRN7 PF11781.3 gi|307594551|ref|YP_003900868.1| - 0.32 10.5 3.6 0.7 9.4 0.1 2.4 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn-ribbon_8 PF09723.5 gi|307594551|ref|YP_003900868.1| - 0.51 10.3 3.2 3.2 7.7 2.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|307594551|ref|YP_003900868.1| - 0.58 10.4 3.0 0.66 10.3 0.3 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.11 gi|307594551|ref|YP_003900868.1| - 0.87 9.3 4.1 0.37 10.5 0.3 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit HhH-GPD PF00730.20 gi|307594552|ref|YP_003900869.1| - 3.3e-11 43.4 0.0 5.6e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|307594552|ref|YP_003900869.1| - 2.2e-06 27.7 0.0 0.00026 21.0 0.0 3.0 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|307594552|ref|YP_003900869.1| - 0.01 15.4 0.0 0.03 14.0 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif Reoviridae_Vp9 PF08978.5 gi|307594552|ref|YP_003900869.1| - 0.013 14.4 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Reoviridae VP9 EndIII_4Fe-2S PF10576.4 gi|307594552|ref|YP_003900869.1| - 0.015 15.4 8.5 0.023 14.8 5.9 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.5 gi|307594552|ref|YP_003900869.1| - 0.14 11.8 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) DUF367 PF04034.8 gi|307594553|ref|YP_003900870.1| - 3e-38 130.2 0.0 4e-38 129.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|307594553|ref|YP_003900870.1| - 0.0036 16.8 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Ald_Xan_dh_C2 PF02738.13 gi|307594554|ref|YP_003900871.1| - 3.5e-98 329.2 0.0 4.6e-98 328.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|307594554|ref|YP_003900871.1| - 7.1e-18 64.7 0.0 1.4e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD_binding_5 PF00941.16 gi|307594555|ref|YP_003900872.1| - 1.5e-50 170.9 0.0 3e-50 170.0 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase Fer2_2 PF01799.15 gi|307594555|ref|YP_003900872.1| - 1.5e-22 79.2 0.1 2.8e-22 78.3 0.0 1.5 1 0 0 1 1 1 1 [2Fe-2S] binding domain CO_deh_flav_C PF03450.12 gi|307594555|ref|YP_003900872.1| - 1.1e-06 28.5 0.0 3.5e-06 26.8 0.0 1.9 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2 PF00111.22 gi|307594555|ref|YP_003900872.1| - 5.1e-06 26.1 0.2 1.3e-05 24.8 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|307594555|ref|YP_003900872.1| - 0.00018 21.2 0.1 0.00049 19.8 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|307594555|ref|YP_003900872.1| - 0.025 14.3 0.2 0.046 13.5 0.1 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PaREP1 PF05942.6 gi|307594556|ref|YP_003900873.1| - 5.6e-28 97.1 0.1 7e-28 96.8 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.1 gi|307594556|ref|YP_003900873.1| - 0.0089 16.0 3.9 0.014 15.4 2.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) HEPN PF05168.9 gi|307594556|ref|YP_003900873.1| - 0.13 12.1 1.4 0.23 11.3 1.0 1.4 1 0 0 1 1 1 0 HEPN domain TM_helix PF05552.7 gi|307594557|ref|YP_003900874.1| - 1.2e-10 40.9 6.5 1.1e-06 28.2 0.2 3.4 4 0 0 4 4 4 2 Conserved TM helix Colicin_V PF02674.11 gi|307594557|ref|YP_003900874.1| - 0.0025 17.6 21.9 0.04 13.7 1.6 3.1 1 1 2 3 3 3 2 Colicin V production protein HAMP PF00672.20 gi|307594557|ref|YP_003900874.1| - 1.9 8.7 9.0 4.5 7.5 0.0 3.4 3 0 0 3 3 3 0 HAMP domain Glycos_transf_1 PF00534.15 gi|307594558|ref|YP_003900875.1| - 1.1e-29 103.0 0.0 1.8e-29 102.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594558|ref|YP_003900875.1| - 2.7e-12 46.9 0.0 8.8e-12 45.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|307594558|ref|YP_003900875.1| - 1.1e-08 35.2 0.0 2.7e-08 33.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|307594558|ref|YP_003900875.1| - 2.9e-06 27.5 0.1 8.7e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|307594558|ref|YP_003900875.1| - 5.8e-05 22.8 0.0 0.00031 20.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Phytoreo_Pns PF05451.6 gi|307594558|ref|YP_003900875.1| - 0.064 11.8 0.4 0.16 10.5 0.1 1.7 2 0 0 2 2 2 0 Phytoreovirus nonstructural protein Pns10/11 Epimerase_2 PF02350.14 gi|307594558|ref|YP_003900875.1| - 0.077 11.7 0.0 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase DUF2173 PF09941.4 gi|307594558|ref|YP_003900875.1| - 0.084 12.8 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) DUF4190 PF13828.1 gi|307594560|ref|YP_003900877.1| - 0.33 10.5 5.5 0.12 11.9 0.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4190) PilX_N PF14341.1 gi|307594560|ref|YP_003900877.1| - 3.3 7.4 6.9 1.5 8.5 3.0 1.8 2 0 0 2 2 2 0 PilX N-terminal RHH_1 PF01402.16 gi|307594561|ref|YP_003900878.1| - 1.8e-07 30.7 2.8 4.2e-07 29.5 0.7 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|307594561|ref|YP_003900878.1| - 4e-06 26.4 0.2 3e-05 23.6 0.0 2.3 2 1 1 3 3 3 1 Ribbon-helix-helix domain RHH_4 PF13467.1 gi|307594561|ref|YP_003900878.1| - 0.0056 16.5 0.2 0.054 13.3 0.2 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix domain RepB-RCR_reg PF10723.4 gi|307594561|ref|YP_003900878.1| - 0.0078 15.9 0.1 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Replication regulatory protein RepB CcdA PF07362.7 gi|307594561|ref|YP_003900878.1| - 0.06 13.2 0.0 0.095 12.5 0.0 1.4 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA MAM33 PF02330.11 gi|307594561|ref|YP_003900878.1| - 0.072 12.8 0.2 0.096 12.4 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial glycoprotein Pox_A14 PF05767.7 gi|307594562|ref|YP_003900879.1| - 0.0049 16.8 3.2 0.0071 16.2 2.2 1.3 1 1 0 1 1 1 1 Poxvirus virion envelope protein A14 DUF2583 PF10762.4 gi|307594562|ref|YP_003900879.1| - 0.51 10.4 2.1 0.75 9.9 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2583) NfeD PF01957.13 gi|307594562|ref|YP_003900879.1| - 0.75 9.9 5.6 0.93 9.6 3.9 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Mid2 PF04478.7 gi|307594562|ref|YP_003900879.1| - 3.4 7.0 4.5 1.9 7.8 1.3 1.7 1 1 1 2 2 2 0 Mid2 like cell wall stress sensor DUF3099 PF11298.3 gi|307594562|ref|YP_003900879.1| - 3.5 7.4 7.8 12 5.7 1.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) DUF1469 PF07332.6 gi|307594562|ref|YP_003900879.1| - 6.8 6.4 9.6 11 5.7 6.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Archease PF01951.11 gi|307594563|ref|YP_003900880.1| - 4.7e-39 133.4 0.0 5.3e-39 133.3 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Arch_ATPase PF01637.13 gi|307594564|ref|YP_003900881.1| - 6.2e-30 104.6 0.2 1.4e-29 103.4 0.0 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_22 PF13401.1 gi|307594564|ref|YP_003900881.1| - 5.3e-10 39.5 0.2 1.9e-09 37.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|307594564|ref|YP_003900881.1| - 9.8e-10 38.7 0.3 2.9e-09 37.1 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|307594564|ref|YP_003900881.1| - 3.4e-07 30.2 0.0 8.1e-06 25.7 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|307594564|ref|YP_003900881.1| - 1.4e-06 27.1 0.0 2.6e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain DUF815 PF05673.8 gi|307594564|ref|YP_003900881.1| - 2.4e-06 26.6 0.0 4.4e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA PF00004.24 gi|307594564|ref|YP_003900881.1| - 0.00066 19.8 0.0 0.0019 18.3 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|307594564|ref|YP_003900881.1| - 0.00084 19.0 0.1 0.0016 18.2 0.1 1.4 1 0 0 1 1 1 1 NTPase ABC_tran PF00005.22 gi|307594564|ref|YP_003900881.1| - 0.0013 19.0 0.3 0.022 15.0 0.1 2.2 1 1 1 2 2 2 1 ABC transporter NACHT PF05729.7 gi|307594564|ref|YP_003900881.1| - 0.0026 17.4 0.1 0.017 14.7 0.1 2.1 1 1 0 1 1 1 1 NACHT domain MobB PF03205.9 gi|307594564|ref|YP_003900881.1| - 0.0082 15.8 0.1 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|307594564|ref|YP_003900881.1| - 0.0096 15.1 0.1 0.022 13.9 0.0 1.6 1 1 1 2 2 2 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|307594564|ref|YP_003900881.1| - 0.014 14.4 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin KAP_NTPase PF07693.9 gi|307594564|ref|YP_003900881.1| - 0.017 14.1 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain Helicase_RecD PF05127.9 gi|307594564|ref|YP_003900881.1| - 0.033 13.8 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 Helicase AAA_25 PF13481.1 gi|307594564|ref|YP_003900881.1| - 0.035 13.5 0.0 0.076 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|307594564|ref|YP_003900881.1| - 0.045 12.6 0.0 0.074 11.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain RuvB_N PF05496.7 gi|307594564|ref|YP_003900881.1| - 0.052 12.5 0.5 0.75 8.7 0.0 2.5 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus AAA_10 PF12846.2 gi|307594564|ref|YP_003900881.1| - 0.11 11.8 0.5 0.8 9.0 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain UPF0079 PF02367.12 gi|307594564|ref|YP_003900881.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MacB_PCD PF12704.2 gi|307594566|ref|YP_003900883.1| - 5.4e-09 35.9 1.9 5.4e-09 35.9 1.3 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain ABC_tran PF00005.22 gi|307594567|ref|YP_003900884.1| - 2.3e-28 99.2 0.0 2.8e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307594567|ref|YP_003900884.1| - 1.2e-14 54.9 0.0 8.6e-13 48.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|307594567|ref|YP_003900884.1| - 4.8e-10 39.0 0.0 1.9e-07 30.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|307594567|ref|YP_003900884.1| - 7.2e-06 25.6 0.1 9.8e-05 22.0 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|307594567|ref|YP_003900884.1| - 1.4e-05 25.1 0.2 2.4e-05 24.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|307594567|ref|YP_003900884.1| - 0.00022 22.0 0.2 0.00035 21.3 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|307594567|ref|YP_003900884.1| - 0.00028 20.3 0.0 0.00049 19.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|307594567|ref|YP_003900884.1| - 0.00035 20.7 0.8 0.0036 17.4 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|307594567|ref|YP_003900884.1| - 0.00051 19.6 0.0 0.019 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|307594567|ref|YP_003900884.1| - 0.00097 18.3 0.0 0.0013 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|307594567|ref|YP_003900884.1| - 0.0013 19.0 0.0 0.0027 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|307594567|ref|YP_003900884.1| - 0.0013 18.9 0.7 0.0089 16.3 0.5 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|307594567|ref|YP_003900884.1| - 0.0026 17.6 0.1 0.027 14.3 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|307594567|ref|YP_003900884.1| - 0.0028 17.1 0.1 0.016 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|307594567|ref|YP_003900884.1| - 0.0035 17.0 0.0 0.0063 16.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|307594567|ref|YP_003900884.1| - 0.004 16.5 0.0 0.0089 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|307594567|ref|YP_003900884.1| - 0.0077 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|307594567|ref|YP_003900884.1| - 0.014 14.2 0.0 0.024 13.5 0.0 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|307594567|ref|YP_003900884.1| - 0.017 15.3 0.0 0.052 13.7 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|307594567|ref|YP_003900884.1| - 0.026 13.1 0.0 0.036 12.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_5 PF07728.9 gi|307594567|ref|YP_003900884.1| - 0.031 14.0 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|307594567|ref|YP_003900884.1| - 0.038 13.8 0.0 0.073 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|307594567|ref|YP_003900884.1| - 0.064 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|307594567|ref|YP_003900884.1| - 0.086 12.7 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF3987 PF13148.1 gi|307594567|ref|YP_003900884.1| - 0.092 11.2 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_15 PF13175.1 gi|307594567|ref|YP_003900884.1| - 0.095 11.7 0.0 10 5.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Adeno_IVa2 PF02456.10 gi|307594567|ref|YP_003900884.1| - 0.11 11.0 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein ABC_ATPase PF09818.4 gi|307594567|ref|YP_003900884.1| - 0.12 10.9 0.1 0.34 9.4 0.0 1.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|307594567|ref|YP_003900884.1| - 0.13 11.4 0.0 2.7 7.0 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|307594567|ref|YP_003900884.1| - 0.15 11.5 0.4 0.81 9.1 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family PMT_2 PF13231.1 gi|307594568|ref|YP_003900885.1| - 0.00045 20.1 14.6 0.00045 20.1 10.1 5.0 2 1 2 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.21 gi|307594569|ref|YP_003900886.1| - 3e-33 114.8 0.2 4.2e-33 114.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|307594569|ref|YP_003900886.1| - 2.5e-32 112.5 0.0 3.5e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|307594569|ref|YP_003900886.1| - 9e-17 61.4 0.4 1.4e-16 60.8 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|307594569|ref|YP_003900886.1| - 4.7e-11 42.2 1.1 5.8e-11 41.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|307594569|ref|YP_003900886.1| - 1.4e-05 24.3 0.0 2.1e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|307594569|ref|YP_003900886.1| - 5e-05 23.5 0.6 8.2e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 DUF58 PF01882.13 gi|307594570|ref|YP_003900887.1| - 9.8e-12 44.8 0.0 2.2e-11 43.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|307594571|ref|YP_003900888.1| - 3.5e-40 136.6 0.0 5.7e-40 135.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|307594571|ref|YP_003900888.1| - 1e-15 57.7 0.0 2.3e-15 56.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|307594571|ref|YP_003900888.1| - 9.5e-07 29.0 0.0 2.7e-06 27.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|307594571|ref|YP_003900888.1| - 9.6e-06 24.8 0.4 0.0042 16.2 0.0 2.3 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|307594571|ref|YP_003900888.1| - 1.2e-05 24.2 0.1 0.0012 17.7 0.0 2.8 2 1 0 2 2 2 1 MCM2/3/5 family AAA_2 PF07724.9 gi|307594571|ref|YP_003900888.1| - 2.4e-05 24.2 0.0 6.1e-05 22.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|307594571|ref|YP_003900888.1| - 5e-05 23.3 0.0 0.00028 20.9 0.0 2.0 3 0 0 3 3 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|307594571|ref|YP_003900888.1| - 0.00027 20.0 0.4 0.00077 18.5 0.3 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|307594571|ref|YP_003900888.1| - 0.00036 20.8 0.0 0.00075 19.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|307594571|ref|YP_003900888.1| - 0.00043 21.0 0.1 0.00075 20.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|307594571|ref|YP_003900888.1| - 0.0009 19.3 0.1 0.0078 16.3 0.1 2.3 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|307594571|ref|YP_003900888.1| - 0.001 18.5 0.3 0.0022 17.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Sigma54_activat PF00158.21 gi|307594571|ref|YP_003900888.1| - 0.0011 18.5 0.1 1.6 8.1 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|307594571|ref|YP_003900888.1| - 0.0012 19.1 0.2 0.029 14.6 0.1 2.3 2 0 0 2 2 2 1 ABC transporter AAA_PrkA PF08298.6 gi|307594571|ref|YP_003900888.1| - 0.0024 16.6 0.2 1.3 7.6 0.0 2.2 2 0 0 2 2 2 2 PrkA AAA domain AAA_23 PF13476.1 gi|307594571|ref|YP_003900888.1| - 0.0036 17.6 0.2 0.006 16.9 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|307594571|ref|YP_003900888.1| - 0.0042 16.8 0.2 0.0094 15.6 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain UPF0079 PF02367.12 gi|307594571|ref|YP_003900888.1| - 0.0049 16.4 0.4 0.0096 15.5 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|307594571|ref|YP_003900888.1| - 0.0055 16.8 0.0 0.021 15.0 0.0 2.0 2 0 0 2 2 2 1 RNA helicase AAA_10 PF12846.2 gi|307594571|ref|YP_003900888.1| - 0.0075 15.7 0.4 0.14 11.5 0.1 2.3 2 1 1 3 3 3 1 AAA-like domain Polyoma_lg_T_C PF06431.6 gi|307594571|ref|YP_003900888.1| - 0.0082 14.8 0.0 0.012 14.2 0.0 1.2 1 0 0 1 1 1 1 Polyomavirus large T antigen C-terminus AAA_25 PF13481.1 gi|307594571|ref|YP_003900888.1| - 0.012 14.9 0.3 0.032 13.6 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|307594571|ref|YP_003900888.1| - 0.015 15.1 0.0 0.044 13.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|307594571|ref|YP_003900888.1| - 0.018 13.9 0.2 0.034 13.0 0.2 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|307594571|ref|YP_003900888.1| - 0.019 14.8 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|307594571|ref|YP_003900888.1| - 0.043 13.3 0.0 0.082 12.3 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Sigma54_activ_2 PF14532.1 gi|307594571|ref|YP_003900888.1| - 0.087 12.8 0.0 0.31 11.1 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.7 gi|307594571|ref|YP_003900888.1| - 0.096 12.3 0.4 0.2 11.3 0.3 1.5 1 0 0 1 1 1 0 NACHT domain G-alpha PF00503.15 gi|307594571|ref|YP_003900888.1| - 0.098 11.3 0.0 0.21 10.2 0.0 1.4 2 0 0 2 2 2 0 G-protein alpha subunit AAA_28 PF13521.1 gi|307594571|ref|YP_003900888.1| - 0.1 12.5 0.2 0.16 11.9 0.2 1.3 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|307594571|ref|YP_003900888.1| - 0.13 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|307594571|ref|YP_003900888.1| - 0.16 11.5 0.1 0.27 10.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|307594571|ref|YP_003900888.1| - 0.21 10.9 0.8 0.48 9.8 0.4 1.6 2 0 0 2 2 1 0 IstB-like ATP binding protein OppC_N PF12911.2 gi|307594572|ref|YP_003900889.1| - 0.0039 16.5 0.3 0.0039 16.5 0.2 2.6 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF4350 PF14258.1 gi|307594572|ref|YP_003900889.1| - 0.063 13.4 0.1 0.47 10.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) DUF4129 PF13559.1 gi|307594573|ref|YP_003900890.1| - 2.6e-06 27.2 1.5 4.8e-06 26.4 1.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|307594573|ref|YP_003900890.1| - 0.006 16.6 1.2 0.006 16.6 0.8 2.9 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF1533 PF07550.6 gi|307594573|ref|YP_003900890.1| - 0.0098 15.8 0.0 0.1 12.6 0.1 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1533) ThiF PF00899.16 gi|307594575|ref|YP_003900892.1| - 0.05 13.4 0.2 0.093 12.5 0.1 1.5 1 0 0 1 1 1 0 ThiF family NfeD PF01957.13 gi|307594575|ref|YP_003900892.1| - 1.1 9.3 5.5 0.49 10.5 2.2 1.6 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF3185 PF11381.3 gi|307594575|ref|YP_003900892.1| - 2 8.2 10.5 0.69 9.7 1.5 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF1616 PF07760.6 gi|307594576|ref|YP_003900893.1| - 8.4e-31 107.1 10.0 1.2e-30 106.7 6.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1382 PF07131.6 gi|307594576|ref|YP_003900893.1| - 0.045 13.8 0.1 0.084 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1382) DUF4395 PF14340.1 gi|307594576|ref|YP_003900893.1| - 0.61 10.1 4.4 2.1 8.4 3.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) DUF1616 PF07760.6 gi|307594577|ref|YP_003900894.1| - 1.1e-20 73.9 2.4 2.1e-20 73.0 1.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2517 PF10725.4 gi|307594577|ref|YP_003900894.1| - 0.32 10.6 2.7 0.33 10.6 0.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2517) TraW_N PF12477.3 gi|307594577|ref|YP_003900894.1| - 6.9 6.7 7.4 5.7 7.0 2.1 2.7 2 0 0 2 2 2 0 Sex factor F TraW protein N terminal Polysacc_synt PF01943.12 gi|307594579|ref|YP_003900896.1| - 1.9e-12 47.0 32.6 1.9e-12 47.0 22.6 2.6 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Thermopsin PF05317.6 gi|307594580|ref|YP_003900897.1| - 2.6e-14 52.7 9.2 6.2e-14 51.5 4.0 2.9 2 1 0 2 2 2 1 Thermopsin Arch_ATPase PF01637.13 gi|307594582|ref|YP_003900899.1| - 1.4e-55 188.5 0.0 1.8e-55 188.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|307594582|ref|YP_003900899.1| - 0.0021 18.0 0.0 0.01 15.8 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|307594582|ref|YP_003900899.1| - 0.007 16.5 0.0 0.019 15.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|307594582|ref|YP_003900899.1| - 0.0097 15.5 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.1 gi|307594582|ref|YP_003900899.1| - 0.011 15.6 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|307594582|ref|YP_003900899.1| - 0.017 15.2 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|307594582|ref|YP_003900899.1| - 0.021 14.4 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein DAP3 PF10236.4 gi|307594582|ref|YP_003900899.1| - 0.034 13.0 0.0 0.091 11.6 0.0 1.7 1 1 1 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_19 PF13245.1 gi|307594582|ref|YP_003900899.1| - 0.067 12.9 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain DEDD_Tnp_IS110 PF01548.12 gi|307594582|ref|YP_003900899.1| - 0.07 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Transposase TK PF00265.13 gi|307594582|ref|YP_003900899.1| - 0.11 12.0 0.0 0.29 10.6 0.0 1.6 1 1 0 1 1 1 0 Thymidine kinase Adeno_IVa2 PF02456.10 gi|307594582|ref|YP_003900899.1| - 0.11 11.0 0.0 2.4 6.7 0.0 2.0 1 1 1 2 2 2 0 Adenovirus IVa2 protein PaREP1 PF05942.6 gi|307594583|ref|YP_003900900.1| - 9.3e-32 109.2 4.5 1.2e-31 108.9 3.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.1 gi|307594583|ref|YP_003900900.1| - 0.0013 18.7 2.5 0.037 14.0 0.3 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4398) HEPN PF05168.9 gi|307594583|ref|YP_003900900.1| - 0.12 12.3 1.3 0.2 11.5 0.5 1.7 2 1 0 2 2 2 0 HEPN domain PS_pyruv_trans PF04230.8 gi|307594585|ref|YP_003900902.1| - 2.2e-22 80.0 0.6 3.4e-22 79.4 0.4 1.3 1 1 0 1 1 1 1 Polysaccharide pyruvyl transferase Sulfatase PF00884.18 gi|307594586|ref|YP_003900903.1| - 0.00033 19.9 0.0 0.0016 17.7 0.0 1.8 2 0 0 2 2 2 1 Sulfatase PglZ PF08665.7 gi|307594586|ref|YP_003900903.1| - 0.089 12.4 0.0 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 PglZ domain AAA_18 PF13238.1 gi|307594587|ref|YP_003900904.1| - 1e-05 25.8 0.0 0.014 15.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain MobB PF03205.9 gi|307594587|ref|YP_003900904.1| - 8.4e-05 22.2 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|307594587|ref|YP_003900904.1| - 0.00018 21.5 0.0 0.00029 20.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|307594587|ref|YP_003900904.1| - 0.0007 19.7 0.0 0.0021 18.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|307594587|ref|YP_003900904.1| - 0.0034 17.6 0.0 0.0053 17.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter DUF258 PF03193.11 gi|307594587|ref|YP_003900904.1| - 0.004 16.3 0.0 0.0067 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|307594587|ref|YP_003900904.1| - 0.004 17.9 0.0 0.011 16.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|307594587|ref|YP_003900904.1| - 0.005 16.2 0.0 0.0078 15.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|307594587|ref|YP_003900904.1| - 0.0052 15.5 0.2 0.0073 15.1 0.1 1.1 1 0 0 1 1 1 1 ArgK protein Arch_ATPase PF01637.13 gi|307594587|ref|YP_003900904.1| - 0.0057 16.3 0.1 0.0084 15.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_28 PF13521.1 gi|307594587|ref|YP_003900904.1| - 0.006 16.5 0.0 0.013 15.4 0.0 1.5 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.10 gi|307594587|ref|YP_003900904.1| - 0.014 15.0 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_33 PF13671.1 gi|307594587|ref|YP_003900904.1| - 0.014 15.2 0.0 0.036 13.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|307594587|ref|YP_003900904.1| - 0.022 14.5 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.12 gi|307594587|ref|YP_003900904.1| - 0.026 14.0 0.0 0.037 13.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.1 gi|307594587|ref|YP_003900904.1| - 0.03 13.8 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|307594587|ref|YP_003900904.1| - 0.033 13.0 0.3 0.86 8.4 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|307594587|ref|YP_003900904.1| - 0.04 13.8 0.0 0.062 13.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase TrwB_AAD_bind PF10412.4 gi|307594587|ref|YP_003900904.1| - 0.063 11.8 0.0 0.1 11.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.1 gi|307594587|ref|YP_003900904.1| - 0.065 12.7 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|307594587|ref|YP_003900904.1| - 0.066 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|307594587|ref|YP_003900904.1| - 0.075 12.7 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain Guanylate_kin PF00625.16 gi|307594587|ref|YP_003900904.1| - 0.095 12.1 0.1 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Guanylate kinase RNA_helicase PF00910.17 gi|307594587|ref|YP_003900904.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|307594587|ref|YP_003900904.1| - 0.13 12.2 0.1 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|307594587|ref|YP_003900904.1| - 0.15 12.3 0.0 0.22 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Methyltransf_21 PF05050.7 gi|307594588|ref|YP_003900905.1| - 6.6e-23 81.4 0.1 1e-22 80.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|307594588|ref|YP_003900905.1| - 7.6e-07 29.7 0.0 1.4e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|307594588|ref|YP_003900905.1| - 0.00082 19.0 0.1 0.0014 18.2 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.6 gi|307594588|ref|YP_003900905.1| - 0.0046 16.0 0.2 0.013 14.5 0.1 1.7 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltransf_23 PF13489.1 gi|307594588|ref|YP_003900905.1| - 0.08 12.6 0.0 0.19 11.4 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain TSKS PF15358.1 gi|307594588|ref|YP_003900905.1| - 0.17 10.0 0.0 0.25 9.4 0.0 1.1 1 0 0 1 1 1 0 Testis-specific serine kinase substrate Glycos_transf_1 PF00534.15 gi|307594589|ref|YP_003900906.1| - 1e-15 57.6 0.0 1.8e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|307594589|ref|YP_003900906.1| - 4.8e-12 46.3 0.3 1.1e-11 45.1 0.3 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|307594589|ref|YP_003900906.1| - 1.9e-09 37.7 0.0 5.5e-09 36.2 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|307594589|ref|YP_003900906.1| - 4.5e-07 30.0 0.0 3.3e-06 27.2 0.0 2.4 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|307594589|ref|YP_003900906.1| - 0.00028 20.6 0.0 0.00051 19.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|307594589|ref|YP_003900906.1| - 0.048 13.5 0.0 0.095 12.5 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like Galactosyl_T PF01762.16 gi|307594589|ref|YP_003900906.1| - 0.083 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Galactosyltransferase Epimerase PF01370.16 gi|307594590|ref|YP_003900907.1| - 3.4e-61 206.6 0.2 4.6e-61 206.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|307594590|ref|YP_003900907.1| - 4e-27 94.6 0.1 4.8e-27 94.3 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|307594590|ref|YP_003900907.1| - 3.3e-20 72.1 0.0 1.5e-19 70.0 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|307594590|ref|YP_003900907.1| - 1.3e-19 70.1 0.0 1.7e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|307594590|ref|YP_003900907.1| - 9.4e-17 61.5 0.0 1.3e-16 61.1 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|307594590|ref|YP_003900907.1| - 5.5e-16 58.2 0.3 4.4e-15 55.2 0.2 2.0 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.8 gi|307594590|ref|YP_003900907.1| - 4.5e-12 45.7 0.0 6.6e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|307594590|ref|YP_003900907.1| - 1.5e-10 41.2 0.3 1.8e-09 37.7 0.2 2.3 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|307594590|ref|YP_003900907.1| - 2.6e-05 23.9 0.0 0.0001 22.0 0.0 1.9 1 1 0 1 1 1 1 KR domain F420_oxidored PF03807.12 gi|307594590|ref|YP_003900907.1| - 0.011 16.1 0.0 0.022 15.1 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|307594590|ref|YP_003900907.1| - 0.014 15.4 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Saccharop_dh PF03435.13 gi|307594590|ref|YP_003900907.1| - 0.018 14.0 0.0 0.028 13.3 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|307594590|ref|YP_003900907.1| - 0.021 14.4 0.0 0.043 13.4 0.0 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|307594590|ref|YP_003900907.1| - 0.046 13.5 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase PHB_acc_N PF07879.6 gi|307594590|ref|YP_003900907.1| - 0.12 12.0 0.1 17 5.2 0.0 2.5 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain Glycos_transf_1 PF00534.15 gi|307594591|ref|YP_003900908.1| - 8e-15 54.6 0.0 1.2e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594591|ref|YP_003900908.1| - 2e-07 31.2 0.0 4.1e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|307594592|ref|YP_003900909.1| - 3.9e-18 65.6 0.1 5.9e-18 65.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|307594592|ref|YP_003900909.1| - 7.7e-11 42.2 0.0 2.2e-10 40.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|307594592|ref|YP_003900909.1| - 0.002 17.2 0.0 0.0025 16.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|307594592|ref|YP_003900909.1| - 0.048 13.9 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Methyltransf_21 PF05050.7 gi|307594593|ref|YP_003900910.1| - 6.1e-20 71.8 0.1 1.2e-19 70.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|307594593|ref|YP_003900910.1| - 2e-08 34.1 0.5 3.2e-08 33.4 0.3 1.3 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|307594593|ref|YP_003900910.1| - 1.2e-05 25.8 0.0 2.2e-05 25.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_22 PF13383.1 gi|307594593|ref|YP_003900910.1| - 0.0027 17.2 0.1 0.0043 16.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain AMNp_N PF10423.4 gi|307594593|ref|YP_003900910.1| - 0.007 15.9 0.1 0.45 10.0 0.0 2.3 1 1 1 2 2 2 1 Bacterial AMP nucleoside phosphorylase N-terminus PrmA PF06325.8 gi|307594593|ref|YP_003900910.1| - 0.042 12.9 0.0 0.062 12.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Glycos_transf_1 PF00534.15 gi|307594594|ref|YP_003900911.1| - 2.6e-16 59.5 0.0 3.4e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594594|ref|YP_003900911.1| - 7.3e-07 29.4 0.0 1.3e-06 28.5 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|307594594|ref|YP_003900911.1| - 0.004 17.4 0.0 0.0055 16.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|307594595|ref|YP_003900912.1| - 0.11 12.3 0.6 11 5.8 0.0 2.1 1 1 1 2 2 2 0 Glycosyl transferase 4-like Polysacc_synt PF01943.12 gi|307594596|ref|YP_003900913.1| - 9e-27 94.0 57.5 9.4e-27 93.9 21.8 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|307594596|ref|YP_003900913.1| - 6.5e-22 78.1 29.2 6.5e-22 78.1 20.3 2.3 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|307594596|ref|YP_003900913.1| - 1.3e-08 34.7 45.9 8.4e-06 25.6 17.5 4.0 2 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Glyco_tranf_2_3 PF13641.1 gi|307594597|ref|YP_003900914.1| - 1.8e-11 44.3 0.0 3.3e-11 43.4 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|307594597|ref|YP_003900914.1| - 1.3e-09 38.0 0.0 2.1e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|307594597|ref|YP_003900914.1| - 7.8e-08 31.7 0.0 1.2e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|307594597|ref|YP_003900914.1| - 8.8e-06 25.5 0.1 1.3e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|307594597|ref|YP_003900914.1| - 1.5e-05 24.1 0.0 4.1e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|307594597|ref|YP_003900914.1| - 0.065 12.4 0.0 0.96 8.6 0.0 2.4 2 1 1 3 3 3 0 Glycosyltransferase like family Glycos_transf_1 PF00534.15 gi|307594598|ref|YP_003900915.1| - 8.4e-20 70.8 0.1 8.5e-19 67.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594598|ref|YP_003900915.1| - 4.2e-10 39.9 0.0 1.5e-09 38.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|307594598|ref|YP_003900915.1| - 7.5e-07 29.0 0.5 1.8e-06 27.7 0.4 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|307594598|ref|YP_003900915.1| - 0.00019 21.6 0.0 0.00044 20.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Exostosin PF03016.10 gi|307594598|ref|YP_003900915.1| - 0.022 13.7 0.0 0.041 12.9 0.0 1.4 1 0 0 1 1 1 0 Exostosin family Glycos_transf_2 PF00535.21 gi|307594599|ref|YP_003900916.1| - 9.6e-08 31.8 0.1 1.1e-07 31.6 0.1 1.0 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF4041 PF13250.1 gi|307594599|ref|YP_003900916.1| - 0.014 14.9 0.1 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4041) CAP59_mtransfer PF11735.3 gi|307594599|ref|YP_003900916.1| - 0.059 12.5 0.1 0.069 12.3 0.1 1.0 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 Glyco_tranf_2_3 PF13641.1 gi|307594599|ref|YP_003900916.1| - 0.064 13.0 0.0 0.069 12.9 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase like family 2 PyocinActivator PF11112.3 gi|307594600|ref|YP_003900917.1| - 0.016 14.9 0.0 0.018 14.8 0.0 1.0 1 0 0 1 1 1 0 Pyocin activator protein PrtN Glycos_transf_1 PF00534.15 gi|307594601|ref|YP_003900918.1| - 3.3e-08 33.1 0.0 7.8e-08 31.9 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594601|ref|YP_003900918.1| - 3.9e-08 33.5 0.0 8.2e-08 32.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Polysacc_deac_1 PF01522.16 gi|307594602|ref|YP_003900919.1| - 1.3e-22 79.7 0.0 2.3e-22 78.9 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_1 PF00534.15 gi|307594603|ref|YP_003900920.1| - 8.2e-33 113.2 0.1 1.2e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594603|ref|YP_003900920.1| - 1.2e-18 67.5 0.0 2.1e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|307594603|ref|YP_003900920.1| - 1.2e-07 31.9 0.0 4e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|307594603|ref|YP_003900920.1| - 2.3e-07 30.7 0.3 8.5e-07 28.8 0.1 1.9 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|307594603|ref|YP_003900920.1| - 1.6e-05 24.7 0.0 3.2e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|307594603|ref|YP_003900920.1| - 0.0019 18.3 0.0 0.0054 16.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|307594603|ref|YP_003900920.1| - 0.0097 15.4 0.0 0.038 13.4 0.0 1.9 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|307594604|ref|YP_003900921.1| - 0.00044 20.4 0.0 0.00096 19.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|307594604|ref|YP_003900921.1| - 0.006 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2897 PF11446.3 gi|307594605|ref|YP_003900922.1| - 0.058 13.2 0.2 0.16 11.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2897) Glycos_transf_1 PF00534.15 gi|307594606|ref|YP_003900923.1| - 2.8e-24 85.4 0.1 4.9e-24 84.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594606|ref|YP_003900923.1| - 3.3e-11 43.4 0.0 8e-11 42.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|307594606|ref|YP_003900923.1| - 0.0062 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 TPP_enzyme_N PF02776.13 gi|307594608|ref|YP_003900925.1| - 0.0068 15.9 0.1 0.01 15.3 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KTSC PF13619.1 gi|307594609|ref|YP_003900926.1| - 0.061 12.9 0.1 0.098 12.3 0.1 1.3 1 0 0 1 1 1 0 KTSC domain PaREP1 PF05942.6 gi|307594610|ref|YP_003900927.1| - 8e-34 115.9 1.1 8e-34 115.9 0.7 1.6 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family Matrilin_ccoil PF10393.4 gi|307594610|ref|YP_003900927.1| - 0.11 11.8 0.2 0.49 9.7 0.0 2.0 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Arch_ATPase PF01637.13 gi|307594611|ref|YP_003900928.1| - 1.6e-56 191.6 0.0 2.1e-56 191.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase DAP3 PF10236.4 gi|307594611|ref|YP_003900928.1| - 0.0085 15.0 0.0 0.02 13.8 0.0 1.6 1 1 1 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 AAA_22 PF13401.1 gi|307594611|ref|YP_003900928.1| - 0.077 13.1 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|307594611|ref|YP_003900928.1| - 0.093 12.6 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|307594611|ref|YP_003900928.1| - 0.098 12.0 0.0 0.29 10.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|307594611|ref|YP_003900928.1| - 0.1 12.5 0.0 0.29 11.0 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain Adeno_IVa2 PF02456.10 gi|307594611|ref|YP_003900928.1| - 0.19 10.3 0.0 0.7 8.4 0.0 1.7 2 0 0 2 2 2 0 Adenovirus IVa2 protein Arch_ATPase PF01637.13 gi|307594612|ref|YP_003900929.1| - 1.7e-54 185.0 0.0 2.7e-54 184.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|307594612|ref|YP_003900929.1| - 0.00011 22.2 0.2 0.00054 20.0 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|307594612|ref|YP_003900929.1| - 0.0064 16.2 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain DAP3 PF10236.4 gi|307594612|ref|YP_003900929.1| - 0.065 12.1 0.0 0.59 9.0 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 NACHT PF05729.7 gi|307594612|ref|YP_003900929.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|307594612|ref|YP_003900929.1| - 0.075 13.1 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|307594612|ref|YP_003900929.1| - 0.085 13.0 0.1 0.36 11.0 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|307594612|ref|YP_003900929.1| - 0.086 12.2 0.1 0.27 10.6 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|307594612|ref|YP_003900929.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|307594613|ref|YP_003900930.1| - 1.7e-54 185.0 0.0 4.2e-54 183.7 0.0 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|307594613|ref|YP_003900930.1| - 0.021 14.8 0.1 0.29 11.0 0.1 2.6 2 1 0 2 2 2 0 AAA ATPase domain SMC_hinge PF06470.8 gi|307594613|ref|YP_003900930.1| - 0.046 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 SMC proteins Flexible Hinge Domain AAA PF00004.24 gi|307594613|ref|YP_003900930.1| - 0.048 13.8 0.0 0.26 11.4 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DAP3 PF10236.4 gi|307594613|ref|YP_003900930.1| - 0.06 12.2 0.0 0.79 8.6 0.0 2.4 2 1 1 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 AAA_10 PF12846.2 gi|307594613|ref|YP_003900930.1| - 0.075 12.4 0.0 0.11 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|307594613|ref|YP_003900930.1| - 0.098 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|307594614|ref|YP_003900931.1| - 3.5e-54 184.0 0.0 5.3e-54 183.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|307594614|ref|YP_003900931.1| - 8e-05 22.7 0.0 0.00017 21.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|307594614|ref|YP_003900931.1| - 0.021 15.0 0.0 0.033 14.3 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307594614|ref|YP_003900931.1| - 0.022 14.9 0.0 0.043 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEDD_Tnp_IS110 PF01548.12 gi|307594614|ref|YP_003900931.1| - 0.047 13.3 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Transposase AAA_28 PF13521.1 gi|307594614|ref|YP_003900931.1| - 0.084 12.8 0.0 0.22 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|307594614|ref|YP_003900931.1| - 0.085 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|307594614|ref|YP_003900931.1| - 0.13 11.1 0.0 0.42 9.4 0.0 1.7 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_25 PF13481.1 gi|307594614|ref|YP_003900931.1| - 0.14 11.4 1.4 0.4 10.0 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|307594614|ref|YP_003900931.1| - 0.15 11.9 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|307594615|ref|YP_003900932.1| - 1.8e-55 188.2 0.0 2.9e-55 187.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|307594615|ref|YP_003900932.1| - 0.0041 17.0 0.0 0.0085 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|307594615|ref|YP_003900932.1| - 0.014 15.6 0.0 0.03 14.5 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|307594615|ref|YP_003900932.1| - 0.029 15.1 0.7 0.24 12.2 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|307594615|ref|YP_003900932.1| - 0.042 14.0 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|307594615|ref|YP_003900932.1| - 0.046 12.6 0.0 0.11 11.4 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DEDD_Tnp_IS110 PF01548.12 gi|307594615|ref|YP_003900932.1| - 0.051 13.2 0.0 0.32 10.6 0.0 2.2 2 0 0 2 2 2 0 Transposase AAA_16 PF13191.1 gi|307594615|ref|YP_003900932.1| - 0.06 13.3 0.0 0.18 11.7 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|307594615|ref|YP_003900932.1| - 0.08 12.3 0.6 0.65 9.3 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|307594615|ref|YP_003900932.1| - 0.18 11.2 0.0 0.47 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain Glycos_transf_2 PF00535.21 gi|307594618|ref|YP_003900935.1| - 5e-23 81.6 0.0 9.7e-23 80.6 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|307594618|ref|YP_003900935.1| - 6.5e-07 29.3 0.3 9.3e-07 28.8 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 HAD_2 PF13419.1 gi|307594619|ref|YP_003900936.1| - 1.7e-24 87.0 0.0 1.9e-24 86.8 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|307594619|ref|YP_003900936.1| - 6.1e-05 23.5 0.0 0.0039 17.6 0.0 2.0 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|307594619|ref|YP_003900936.1| - 0.0012 18.4 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like NadA PF02445.11 gi|307594624|ref|YP_003900941.1| - 5.5e-101 337.2 0.0 6.3e-101 337.0 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein ADH_zinc_N PF00107.21 gi|307594624|ref|YP_003900941.1| - 0.069 12.6 0.1 6.6 6.3 0.0 2.7 2 1 1 3 3 3 0 Zinc-binding dehydrogenase Sua5_yciO_yrdC PF01300.13 gi|307594624|ref|YP_003900941.1| - 0.071 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Telomere recombination GARS_N PF02844.10 gi|307594624|ref|YP_003900941.1| - 0.093 13.2 0.1 3.9 8.0 0.0 3.1 2 2 2 4 4 4 0 Phosphoribosylglycinamide synthetase, N domain FAD_binding_2 PF00890.19 gi|307594625|ref|YP_003900942.1| - 2e-76 257.5 1.4 2.6e-76 257.1 1.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|307594625|ref|YP_003900942.1| - 6.6e-14 51.8 0.1 8.8e-11 41.7 0.1 2.3 1 1 1 2 2 2 2 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|307594625|ref|YP_003900942.1| - 8.6e-12 45.3 0.0 5e-11 42.8 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|307594625|ref|YP_003900942.1| - 1.5e-11 43.8 5.2 1.7e-05 23.9 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|307594625|ref|YP_003900942.1| - 8.2e-06 24.9 1.2 0.021 13.7 0.6 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|307594625|ref|YP_003900942.1| - 0.00083 17.9 1.6 0.01 14.3 0.6 2.4 2 1 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|307594625|ref|YP_003900942.1| - 0.0024 17.8 0.8 0.0089 16.0 0.6 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|307594625|ref|YP_003900942.1| - 0.012 14.2 0.8 3.2 6.2 0.2 2.3 2 0 0 2 2 2 0 Tryptophan halogenase FAD_oxidored PF12831.2 gi|307594625|ref|YP_003900942.1| - 0.028 13.4 0.4 0.048 12.7 0.2 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|307594625|ref|YP_003900942.1| - 0.089 13.2 1.6 0.18 12.2 0.4 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase QRPTase_C PF01729.14 gi|307594626|ref|YP_003900943.1| - 5.7e-60 201.6 0.1 7e-60 201.3 0.1 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|307594626|ref|YP_003900943.1| - 1.2e-20 73.1 0.0 2.3e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain MFS_1 PF07690.11 gi|307594627|ref|YP_003900944.1| - 5.6e-17 61.4 52.3 3.6e-16 58.8 29.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|307594627|ref|YP_003900944.1| - 3.9e-05 23.3 12.5 0.0014 18.3 0.0 4.2 3 1 1 4 4 4 2 MFS_1 like family MFS_3 PF05977.8 gi|307594627|ref|YP_003900944.1| - 1.3 7.0 17.1 2 6.4 5.4 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector AFOR_C PF01314.13 gi|307594628|ref|YP_003900945.1| - 3.8e-106 354.9 0.0 4.8e-106 354.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|307594628|ref|YP_003900945.1| - 2.5e-72 242.4 0.2 4.5e-72 241.6 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain CoA_trans PF01144.18 gi|307594630|ref|YP_003900947.1| - 4.7e-33 114.2 0.3 6.8e-27 94.0 0.0 3.5 2 1 0 2 2 2 2 Coenzyme A transferase Spermine_synth PF01564.12 gi|307594631|ref|YP_003900948.1| - 8.9e-65 218.0 0.0 1.2e-64 217.6 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|307594631|ref|YP_003900948.1| - 9.2e-07 29.4 0.0 2e-06 28.3 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|307594631|ref|YP_003900948.1| - 0.00044 20.2 0.0 0.00081 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307594631|ref|YP_003900948.1| - 0.0007 19.2 0.0 0.0016 18.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307594631|ref|YP_003900948.1| - 0.0017 18.7 0.0 0.0042 17.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307594631|ref|YP_003900948.1| - 0.0018 18.7 0.0 0.0031 17.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|307594631|ref|YP_003900948.1| - 0.0042 16.1 0.3 0.012 14.6 0.1 1.7 1 1 1 2 2 2 1 Protein of unknown function DUF43 MTS PF05175.9 gi|307594631|ref|YP_003900948.1| - 0.017 14.4 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|307594631|ref|YP_003900948.1| - 0.026 13.9 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_30 PF05430.6 gi|307594631|ref|YP_003900948.1| - 0.089 12.4 0.0 0.22 11.2 0.0 1.6 2 0 0 2 2 2 0 S-adenosyl-L-methionine-dependent methyltransferase SGT1 PF07093.6 gi|307594631|ref|YP_003900948.1| - 0.17 10.2 0.0 0.24 9.7 0.0 1.1 1 0 0 1 1 1 0 SGT1 protein Aminotran_3 PF00202.16 gi|307594632|ref|YP_003900949.1| - 7.4e-88 294.6 0.0 8.8e-88 294.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Methyltransf_11 PF08241.7 gi|307594633|ref|YP_003900950.1| - 6.7e-19 68.1 0.0 1e-18 67.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|307594633|ref|YP_003900950.1| - 4.7e-18 65.4 0.0 6.5e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307594633|ref|YP_003900950.1| - 4.5e-11 43.0 0.0 7.4e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307594633|ref|YP_003900950.1| - 2.2e-10 40.8 0.0 3.7e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307594633|ref|YP_003900950.1| - 2.9e-10 39.9 0.0 4.8e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307594633|ref|YP_003900950.1| - 9.1e-09 35.8 0.0 2e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|307594633|ref|YP_003900950.1| - 6.7e-08 31.9 0.0 9.8e-08 31.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|307594633|ref|YP_003900950.1| - 3.5e-05 23.8 0.0 7.2e-05 22.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|307594633|ref|YP_003900950.1| - 0.00021 21.3 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase TehB PF03848.9 gi|307594633|ref|YP_003900950.1| - 0.00029 20.0 0.0 0.00049 19.3 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.7 gi|307594633|ref|YP_003900950.1| - 0.00058 19.2 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|307594633|ref|YP_003900950.1| - 0.0057 16.0 0.0 0.0096 15.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|307594633|ref|YP_003900950.1| - 0.0071 15.4 0.0 0.0097 14.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|307594633|ref|YP_003900950.1| - 0.1 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NTP_transf_5 PF14907.1 gi|307594634|ref|YP_003900951.1| - 2.2e-05 23.9 0.0 3.2e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Arch_ATPase PF01637.13 gi|307594635|ref|YP_003900952.1| - 1.5e-11 44.4 0.0 2.1e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|307594635|ref|YP_003900952.1| - 2.7e-05 24.2 0.0 7e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307594635|ref|YP_003900952.1| - 3.2e-05 23.9 0.1 0.00012 22.0 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|307594635|ref|YP_003900952.1| - 0.0043 16.4 0.0 0.0072 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|307594635|ref|YP_003900952.1| - 0.0098 15.7 0.0 0.027 14.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|307594635|ref|YP_003900952.1| - 0.011 16.0 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|307594635|ref|YP_003900952.1| - 0.013 16.3 0.0 0.038 14.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|307594635|ref|YP_003900952.1| - 0.014 15.6 0.0 0.096 12.8 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|307594635|ref|YP_003900952.1| - 0.019 14.6 0.0 0.038 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) KaiC PF06745.8 gi|307594635|ref|YP_003900952.1| - 0.021 13.9 0.0 0.039 13.0 0.0 1.5 1 0 0 1 1 1 0 KaiC AAA_33 PF13671.1 gi|307594635|ref|YP_003900952.1| - 0.029 14.2 0.0 0.055 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|307594635|ref|YP_003900952.1| - 0.045 12.4 0.0 0.075 11.6 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein RNA_helicase PF00910.17 gi|307594635|ref|YP_003900952.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase UPF0079 PF02367.12 gi|307594635|ref|YP_003900952.1| - 0.13 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|307594635|ref|YP_003900952.1| - 0.18 11.4 0.0 0.43 10.2 0.0 1.7 1 1 0 1 1 1 0 NACHT domain DUF86 PF01934.12 gi|307594637|ref|YP_003900954.1| - 1.7e-22 79.2 0.1 2e-22 79.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|307594638|ref|YP_003900955.1| - 1.5e-06 28.4 0.4 2.1e-06 27.9 0.3 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain PQQ_2 PF13360.1 gi|307594639|ref|YP_003900956.1| - 0.0026 17.2 0.0 0.078 12.4 0.0 2.4 2 0 0 2 2 2 2 PQQ-like domain Ribosomal_S30 PF04758.9 gi|307594641|ref|YP_003900958.1| - 1.8e-10 40.3 0.5 2.3e-10 40.0 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S30 LAGLIDADG_3 PF14528.1 gi|307594642|ref|YP_003900959.1| - 3.3e-06 27.2 1.4 0.0025 18.0 0.1 3.8 4 1 0 4 4 4 2 LAGLIDADG-like domain LAGLIDADG_2 PF03161.8 gi|307594642|ref|YP_003900959.1| - 5.7e-05 23.1 0.8 0.28 11.0 0.0 2.5 2 1 0 2 2 2 2 LAGLIDADG DNA endonuclease family LAGLIDADG_WhiA PF14527.1 gi|307594642|ref|YP_003900959.1| - 0.057 13.2 0.1 0.26 11.1 0.0 2.1 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain Asp_protease_2 PF13650.1 gi|307594643|ref|YP_003900960.1| - 9.7e-09 35.6 0.4 1.4e-08 35.0 0.3 1.3 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|307594643|ref|YP_003900960.1| - 5.9e-07 29.2 0.1 1.5e-06 27.9 0.0 1.8 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|307594643|ref|YP_003900960.1| - 1.7e-05 24.6 0.0 1.9e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp PF00026.18 gi|307594643|ref|YP_003900960.1| - 0.14 11.3 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic aspartyl protease HEPN PF05168.9 gi|307594644|ref|YP_003900961.1| - 4.3e-35 120.1 0.1 5.3e-35 119.8 0.1 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|307594644|ref|YP_003900961.1| - 4.5 7.1 5.8 4.8 7.0 1.8 2.2 2 1 0 2 2 2 0 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|307594645|ref|YP_003900962.1| - 1.5e-08 34.8 0.1 1.8e-08 34.6 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain AAA_21 PF13304.1 gi|307594648|ref|YP_003900965.1| - 1.2e-23 84.5 1.1 3.3e-23 83.0 0.7 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|307594648|ref|YP_003900965.1| - 3e-08 34.2 0.2 4.6e-08 33.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|307594648|ref|YP_003900965.1| - 5.8e-08 32.1 0.1 0.004 16.2 0.0 2.8 2 1 1 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|307594648|ref|YP_003900965.1| - 1.4e-05 24.5 0.0 3.2e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|307594648|ref|YP_003900965.1| - 0.00035 20.8 0.1 0.016 15.4 0.0 2.8 2 2 0 2 2 2 1 ABC transporter DUF2813 PF11398.3 gi|307594648|ref|YP_003900965.1| - 0.001 18.2 0.2 0.018 14.1 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|307594648|ref|YP_003900965.1| - 0.028 13.6 0.0 0.091 11.9 0.0 1.9 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|307594648|ref|YP_003900965.1| - 0.035 14.0 0.4 0.089 12.7 0.3 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF4276 PF14103.1 gi|307594649|ref|YP_003900966.1| - 0.021 14.7 0.0 0.22 11.3 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4276) Sld5 PF05916.6 gi|307594651|ref|YP_003900968.1| - 2.8e-05 24.3 0.1 3.4e-05 24.0 0.1 1.1 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.18 gi|307594652|ref|YP_003900969.1| - 4.2e-142 472.8 0.0 5.9e-142 472.3 0.0 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|307594652|ref|YP_003900969.1| - 1.1e-20 74.2 0.5 1.1e-19 71.0 0.1 2.3 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|307594652|ref|YP_003900969.1| - 2.6e-09 36.5 0.1 3.5e-06 26.3 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|307594652|ref|YP_003900969.1| - 1.4e-07 31.1 0.0 3.3e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|307594652|ref|YP_003900969.1| - 1.4e-05 24.8 0.0 3.9e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.5 gi|307594652|ref|YP_003900969.1| - 7.7e-05 22.5 0.7 0.00016 21.5 0.5 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Sigma54_activat PF00158.21 gi|307594652|ref|YP_003900969.1| - 0.003 17.0 0.1 0.019 14.4 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain zinc_ribbon_2 PF13240.1 gi|307594652|ref|YP_003900969.1| - 0.0049 16.3 2.3 1.7 8.2 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain AAA PF00004.24 gi|307594652|ref|YP_003900969.1| - 0.011 15.8 0.1 0.052 13.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) HypA PF01155.14 gi|307594652|ref|YP_003900969.1| - 0.018 14.6 0.1 0.036 13.7 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA_16 PF13191.1 gi|307594652|ref|YP_003900969.1| - 0.027 14.4 0.5 0.22 11.5 0.1 2.8 2 1 0 2 2 2 0 AAA ATPase domain DZR PF12773.2 gi|307594652|ref|YP_003900969.1| - 0.065 13.0 0.3 0.12 12.1 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon NTPase_1 PF03266.10 gi|307594652|ref|YP_003900969.1| - 0.072 12.7 0.5 2.6 7.7 0.2 2.6 1 1 1 2 2 2 0 NTPase DUF3040 PF11239.3 gi|307594652|ref|YP_003900969.1| - 0.086 12.9 0.0 0.28 11.2 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) TF_Zn_Ribbon PF08271.7 gi|307594652|ref|YP_003900969.1| - 0.12 11.6 0.5 15 5.0 0.0 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|307594652|ref|YP_003900969.1| - 0.12 11.5 2.0 1.8 7.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|307594652|ref|YP_003900969.1| - 0.2 11.0 0.0 0.54 9.6 0.0 1.6 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-tcix PF14952.1 gi|307594652|ref|YP_003900969.1| - 0.32 10.3 1.5 0.81 9.0 0.2 2.0 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding RNA_POL_M_15KD PF02150.11 gi|307594652|ref|YP_003900969.1| - 2 8.1 4.2 1.5 8.5 0.1 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TA0956 PF11513.3 gi|307594653|ref|YP_003900970.1| - 0.094 12.7 0.2 0.27 11.3 0.0 1.8 1 1 1 2 2 2 0 Thermoplasma acidophilum protein TA0956 Fer4_21 PF14697.1 gi|307594654|ref|YP_003900971.1| - 1.9e-10 40.4 6.1 2.8e-10 39.8 4.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307594654|ref|YP_003900971.1| - 9.1e-09 34.5 17.2 3.1e-05 23.3 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307594654|ref|YP_003900971.1| - 2.5e-07 30.3 8.6 4.2e-07 29.6 6.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307594654|ref|YP_003900971.1| - 2.7e-07 30.7 10.1 4.5e-07 30.0 7.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307594654|ref|YP_003900971.1| - 1.3e-06 29.0 3.7 0.0013 19.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|307594654|ref|YP_003900971.1| - 2.4e-06 27.8 10.2 4.6e-06 26.9 7.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307594654|ref|YP_003900971.1| - 5.1e-06 26.7 2.2 0.075 13.3 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307594654|ref|YP_003900971.1| - 1.1e-05 25.1 12.9 0.0048 16.7 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|307594654|ref|YP_003900971.1| - 5.4e-05 23.6 9.7 0.0029 18.1 0.5 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|307594654|ref|YP_003900971.1| - 8.7e-05 22.4 8.2 0.021 14.8 0.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307594654|ref|YP_003900971.1| - 0.00028 20.9 10.3 0.022 15.0 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|307594654|ref|YP_003900971.1| - 0.00028 21.1 11.8 0.00073 19.8 0.8 3.1 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|307594654|ref|YP_003900971.1| - 0.00071 19.9 6.5 0.12 12.8 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307594654|ref|YP_003900971.1| - 0.00089 19.0 15.1 0.086 12.7 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain POR_N PF01855.14 gi|307594655|ref|YP_003900972.1| - 7.8e-52 176.0 0.1 1e-51 175.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|307594655|ref|YP_003900972.1| - 1.8e-05 24.2 0.4 3.7e-05 23.2 0.3 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|307594655|ref|YP_003900972.1| - 0.00038 20.3 0.1 0.0016 18.3 0.0 2.1 2 1 1 3 3 3 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|307594656|ref|YP_003900973.1| - 6e-15 55.1 0.4 8.3e-15 54.6 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|307594656|ref|YP_003900973.1| - 0.01 14.7 0.2 0.026 13.4 0.1 1.7 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Proteasome_A_N PF10584.4 gi|307594656|ref|YP_003900973.1| - 0.14 11.5 0.0 0.28 10.5 0.0 1.6 1 0 0 1 1 1 0 Proteasome subunit A N-terminal signature MFS_1 PF07690.11 gi|307594657|ref|YP_003900974.1| - 9.9e-23 80.4 62.9 1.2e-15 57.1 23.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily FAD-oxidase_C PF02913.14 gi|307594658|ref|YP_003900975.1| - 9.8e-63 211.7 0.0 1.5e-62 211.1 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|307594658|ref|YP_003900975.1| - 1.1e-40 138.3 0.7 6.9e-40 135.7 0.5 2.3 1 1 0 1 1 1 1 FAD binding domain FAD_binding_4 PF01565.18 gi|307594659|ref|YP_003900976.1| - 2.1e-20 72.5 0.0 3.1e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.14 gi|307594659|ref|YP_003900976.1| - 0.0028 17.0 0.0 0.0054 16.0 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain WYL PF13280.1 gi|307594659|ref|YP_003900976.1| - 0.045 13.6 0.0 0.077 12.8 0.0 1.3 1 0 0 1 1 1 0 WYL domain DUF3970 PF13113.1 gi|307594659|ref|YP_003900976.1| - 0.11 12.2 0.1 0.29 10.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) CCG PF02754.11 gi|307594660|ref|YP_003900977.1| - 6.3e-23 80.5 0.0 5.3e-10 39.1 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|307594660|ref|YP_003900977.1| - 4.2e-12 45.8 4.7 1.1e-11 44.5 3.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307594660|ref|YP_003900977.1| - 1.6e-11 44.3 5.7 1.7e-11 44.2 2.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307594660|ref|YP_003900977.1| - 5.2e-11 42.7 5.0 1.2e-10 41.5 3.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307594660|ref|YP_003900977.1| - 2.6e-08 33.5 2.7 0.0029 17.3 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307594660|ref|YP_003900977.1| - 9.9e-06 25.2 11.5 0.0044 16.8 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|307594660|ref|YP_003900977.1| - 1.5e-05 24.3 13.0 0.0077 15.7 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|307594660|ref|YP_003900977.1| - 0.00071 19.3 12.7 0.037 13.9 1.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|307594660|ref|YP_003900977.1| - 0.0015 18.7 11.6 0.12 12.6 8.9 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307594660|ref|YP_003900977.1| - 0.0031 17.7 13.4 0.38 11.2 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307594660|ref|YP_003900977.1| - 0.0061 16.3 10.0 0.19 11.5 0.2 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307594660|ref|YP_003900977.1| - 0.0075 16.6 13.0 0.03 14.7 1.6 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307594660|ref|YP_003900977.1| - 0.042 14.5 8.1 2.5 8.9 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|307594660|ref|YP_003900977.1| - 0.23 11.0 2.9 12 5.5 0.2 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF3801 PF12687.2 gi|307594660|ref|YP_003900977.1| - 0.26 10.8 0.0 0.43 10.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) Fer4_3 PF12798.2 gi|307594660|ref|YP_003900977.1| - 1.1 10.0 18.2 4.9 7.9 3.6 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|307594660|ref|YP_003900977.1| - 1.7 9.2 6.4 4.9 7.7 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain GHMP_kinases_N PF00288.21 gi|307594661|ref|YP_003900978.1| - 2e-17 63.0 2.7 1.2e-16 60.4 1.8 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|307594661|ref|YP_003900978.1| - 4.8e-11 42.7 0.1 1.5e-10 41.0 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal DAO PF01266.19 gi|307594662|ref|YP_003900979.1| - 4.5e-21 75.1 0.4 1.4e-15 57.0 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|307594662|ref|YP_003900979.1| - 0.00049 20.0 0.0 0.0065 16.3 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|307594662|ref|YP_003900979.1| - 0.0028 16.7 0.1 0.0051 15.9 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|307594662|ref|YP_003900979.1| - 0.017 15.4 2.2 0.028 14.8 0.5 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|307594662|ref|YP_003900979.1| - 0.034 13.8 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DIT1_PvcA PF05141.7 gi|307594662|ref|YP_003900979.1| - 0.21 10.8 0.3 0.31 10.3 0.2 1.2 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein DEAD PF00270.24 gi|307594663|ref|YP_003900980.1| - 9.3e-30 103.3 0.2 3.4e-29 101.4 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|307594663|ref|YP_003900980.1| - 2.1e-16 59.8 0.2 7.9e-16 57.9 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|307594663|ref|YP_003900980.1| - 3.9e-09 36.2 0.0 1.1e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_2 PF12826.2 gi|307594663|ref|YP_003900980.1| - 6.3e-06 25.9 0.1 6e-05 22.8 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif ResIII PF04851.10 gi|307594663|ref|YP_003900980.1| - 2.7e-05 24.0 0.0 5.5e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|307594663|ref|YP_003900980.1| - 0.00019 20.3 0.1 0.00033 19.5 0.1 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain DNA_pol_lambd_f PF10391.4 gi|307594663|ref|YP_003900980.1| - 0.00047 19.6 0.0 0.0016 17.9 0.0 2.0 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda Methyltransf_18 PF12847.2 gi|307594663|ref|YP_003900980.1| - 0.028 15.0 0.1 0.13 12.8 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Sec63 PF02889.11 gi|307594663|ref|YP_003900980.1| - 0.045 12.9 0.0 0.39 9.9 0.0 2.1 2 0 0 2 2 2 0 Sec63 Brl domain NTP_transferase PF00483.18 gi|307594664|ref|YP_003900981.1| - 3.6e-28 98.5 0.0 4.3e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|307594664|ref|YP_003900981.1| - 2.8e-07 30.7 0.0 4.5e-07 30.0 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Rho_RNA_bind PF07497.7 gi|307594664|ref|YP_003900981.1| - 0.037 13.6 0.2 3.2 7.4 0.0 2.5 1 1 1 2 2 2 0 Rho termination factor, RNA-binding domain Glycos_transf_1 PF00534.15 gi|307594665|ref|YP_003900982.1| - 4.7e-16 58.6 0.0 3.2e-15 55.9 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594665|ref|YP_003900982.1| - 1.6e-11 44.5 0.0 2.5e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|307594665|ref|YP_003900982.1| - 1.1e-08 35.1 0.0 1.8e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Peptidase_M20 PF01546.23 gi|307594666|ref|YP_003900983.1| - 4.7e-38 130.5 0.0 5.8e-38 130.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|307594666|ref|YP_003900983.1| - 3.6e-12 46.0 0.0 7.3e-12 45.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.9 gi|307594666|ref|YP_003900983.1| - 0.0033 16.2 0.0 0.03 13.0 0.0 2.0 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.12 gi|307594666|ref|YP_003900983.1| - 0.029 14.0 0.0 0.09 12.5 0.0 1.8 2 0 0 2 2 2 0 Peptidase family M28 Sugar_tr PF00083.19 gi|307594667|ref|YP_003900984.1| - 5.6e-94 315.2 30.5 6.4e-94 315.0 21.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|307594667|ref|YP_003900984.1| - 1.8e-32 112.4 41.2 1.8e-32 112.4 28.5 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|307594667|ref|YP_003900984.1| - 9.3e-07 27.4 2.6 9.3e-07 27.4 1.8 1.9 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) DUF1129 PF06570.6 gi|307594667|ref|YP_003900984.1| - 0.0024 17.2 4.6 0.0089 15.3 3.2 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) Ribosomal_L22 PF00237.14 gi|307594668|ref|YP_003900985.1| - 2.4e-30 104.5 0.0 3.1e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Formyl_trans_C PF02911.13 gi|307594668|ref|YP_003900985.1| - 0.017 15.1 1.3 1.1 9.4 0.1 2.6 2 1 0 2 2 2 0 Formyl transferase, C-terminal domain NAD_kinase PF01513.16 gi|307594670|ref|YP_003900987.1| - 8.5e-37 126.4 1.8 1.3e-36 125.8 1.2 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|307594670|ref|YP_003900987.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain eIF-5a PF01287.15 gi|307594671|ref|YP_003900988.1| - 2.9e-12 46.3 0.1 4.7e-12 45.6 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|307594671|ref|YP_003900988.1| - 9.3e-07 28.6 0.1 1.8e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|307594671|ref|YP_003900988.1| - 0.00014 21.4 0.8 0.00035 20.1 0.6 1.7 1 0 0 1 1 1 1 KOW motif EFP PF01132.15 gi|307594671|ref|YP_003900988.1| - 0.0032 17.1 0.1 0.0067 16.0 0.0 1.6 2 0 0 2 2 2 1 Elongation factor P (EF-P) OB domain DUF655 PF04919.7 gi|307594672|ref|YP_003900989.1| - 1.2e-61 207.5 0.4 1.4e-61 207.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|307594672|ref|YP_003900989.1| - 1.1e-05 25.4 0.1 6.8e-05 22.8 0.0 2.0 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|307594672|ref|YP_003900989.1| - 0.00026 20.8 0.0 0.00059 19.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|307594673|ref|YP_003900990.1| - 2.8e-18 66.0 0.3 3.4e-18 65.7 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 UPF0154 PF03672.8 gi|307594673|ref|YP_003900990.1| - 0.0087 15.6 0.0 0.48 10.0 0.0 2.3 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0154) HHH_5 PF14520.1 gi|307594673|ref|YP_003900990.1| - 0.014 15.5 0.1 0.61 10.2 0.0 2.0 1 1 1 2 2 2 0 Helix-hairpin-helix domain SRP54_N PF02881.14 gi|307594673|ref|YP_003900990.1| - 0.09 12.8 2.4 0.16 12.0 0.2 2.4 1 1 0 2 2 2 0 SRP54-type protein, helical bundle domain TilS PF09179.6 gi|307594673|ref|YP_003900990.1| - 0.12 12.4 0.0 9.6 6.3 0.0 2.2 1 1 1 2 2 2 0 TilS substrate binding domain Ribosomal_L21e PF01157.13 gi|307594674|ref|YP_003900991.1| - 4.2e-19 68.1 1.3 4.9e-19 67.9 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|307594675|ref|YP_003900992.1| - 3.6e-10 39.9 0.1 1.1e-09 38.3 0.1 1.9 1 0 0 1 1 1 1 THUMP domain LOH1CR12 PF10158.4 gi|307594676|ref|YP_003900993.1| - 0.085 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Tumour suppressor protein dTDP_sugar_isom PF00908.12 gi|307594677|ref|YP_003900994.1| - 2.2e-66 222.5 0.0 2.5e-66 222.3 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase HTH_5 PF01022.15 gi|307594678|ref|YP_003900995.1| - 3.3e-08 33.0 0.0 5.9e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|307594678|ref|YP_003900995.1| - 1.3e-05 24.4 0.1 2.6e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|307594678|ref|YP_003900995.1| - 9.2e-05 22.6 0.0 0.0067 16.7 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|307594678|ref|YP_003900995.1| - 0.00032 20.3 0.0 0.0016 18.1 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|307594678|ref|YP_003900995.1| - 0.00048 19.8 0.1 0.0018 18.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|307594678|ref|YP_003900995.1| - 0.0011 18.6 0.1 0.0049 16.5 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|307594678|ref|YP_003900995.1| - 0.004 16.8 0.9 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|307594678|ref|YP_003900995.1| - 0.0056 16.6 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|307594678|ref|YP_003900995.1| - 0.013 15.2 0.0 0.093 12.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|307594678|ref|YP_003900995.1| - 0.018 15.0 0.1 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|307594678|ref|YP_003900995.1| - 0.049 13.7 0.1 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix UPF0179 PF03684.8 gi|307594678|ref|YP_003900995.1| - 0.063 12.8 0.5 0.22 11.1 0.1 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0179) GAGA PF09237.6 gi|307594678|ref|YP_003900995.1| - 0.099 12.2 0.2 0.8 9.3 0.0 2.2 2 0 0 2 2 2 0 GAGA factor Robl_LC7 PF03259.12 gi|307594679|ref|YP_003900996.1| - 4.4e-09 35.7 0.3 6e-09 35.3 0.2 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain UPF0047 PF01894.12 gi|307594680|ref|YP_003900997.1| - 4.6e-37 126.4 0.0 5.5e-37 126.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DNase-RNase PF02577.9 gi|307594681|ref|YP_003900998.1| - 6.3e-34 116.1 0.3 7.9e-34 115.8 0.2 1.0 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_His PF13393.1 gi|307594682|ref|YP_003900999.1| - 2.4e-66 223.9 0.0 2.9e-66 223.6 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|307594682|ref|YP_003900999.1| - 2.9e-20 72.5 0.0 9.8e-20 70.8 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|307594682|ref|YP_003900999.1| - 7.7e-11 41.8 0.0 2.2e-10 40.3 0.0 1.8 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|307594682|ref|YP_003900999.1| - 0.00014 20.7 0.8 0.017 13.8 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|307594682|ref|YP_003900999.1| - 0.0023 17.1 0.0 0.0091 15.2 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) UBA PF00627.26 gi|307594682|ref|YP_003900999.1| - 0.024 14.4 0.1 0.17 11.7 0.0 2.4 2 0 0 2 2 2 0 UBA/TS-N domain WIYLD PF10440.4 gi|307594682|ref|YP_003900999.1| - 0.042 13.7 0.0 0.3 11.0 0.0 2.3 1 1 1 2 2 2 0 Ubiquitin-binding WIYLD domain Peptidase_A24 PF01478.13 gi|307594683|ref|YP_003901000.1| - 1.1e-10 41.6 10.3 1.1e-10 41.6 7.2 2.1 3 0 0 3 3 3 1 Type IV leader peptidase family Arc_PepC_II PF06847.6 gi|307594683|ref|YP_003901000.1| - 0.00067 20.0 0.3 0.002 18.5 0.2 1.8 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Thiolase_C PF02803.13 gi|307594684|ref|YP_003901001.1| - 0.024 14.0 0.0 0.048 13.0 0.0 1.4 1 0 0 1 1 1 0 Thiolase, C-terminal domain Thiolase_C PF02803.13 gi|307594685|ref|YP_003901002.1| - 1e-06 28.1 0.1 0.0034 16.7 0.0 2.6 3 0 0 3 3 3 2 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|307594685|ref|YP_003901002.1| - 0.00069 18.6 0.1 0.088 11.7 0.0 2.3 2 0 0 2 2 2 2 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|307594685|ref|YP_003901002.1| - 0.044 13.4 0.1 9.7 5.9 0.0 2.7 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peptidase_M22 PF00814.20 gi|307594685|ref|YP_003901002.1| - 0.057 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Glycoprotease family DUF3502 PF12010.3 gi|307594686|ref|YP_003901003.1| - 0.064 13.2 0.1 0.46 10.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3502) Sugar_tr PF00083.19 gi|307594687|ref|YP_003901004.1| - 8.1e-28 97.1 45.4 1.3e-16 60.2 9.7 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|307594687|ref|YP_003901004.1| - 4.9e-25 87.9 51.7 4.9e-25 87.9 35.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Asp_Glu_race PF01177.17 gi|307594688|ref|YP_003901005.1| - 2.8e-27 96.0 0.1 3.2e-27 95.8 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Lactamase_B PF00753.22 gi|307594689|ref|YP_003901006.1| - 1.8e-17 63.6 0.3 2.4e-17 63.2 0.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|307594689|ref|YP_003901006.1| - 5.9e-06 25.9 0.1 8.6e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|307594689|ref|YP_003901006.1| - 0.0042 16.7 0.0 0.0065 16.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Hydantoinase_A PF01968.13 gi|307594690|ref|YP_003901007.1| - 4e-89 298.5 6.8 1.1e-88 297.1 0.5 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|307594690|ref|YP_003901007.1| - 1.7e-47 161.2 0.1 3.7e-47 160.0 0.0 1.6 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|307594690|ref|YP_003901007.1| - 0.00026 20.3 0.1 0.41 9.8 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|307594690|ref|YP_003901007.1| - 0.011 14.1 0.3 0.66 8.2 0.0 2.2 2 0 0 2 2 2 0 MutL protein NTP_transf_5 PF14907.1 gi|307594691|ref|YP_003901008.1| - 5.8e-05 22.5 0.0 9.6e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase TENA_THI-4 PF03070.11 gi|307594692|ref|YP_003901009.1| - 9.3e-23 81.0 0.3 1.1e-22 80.8 0.2 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DUF4546 PF15079.1 gi|307594692|ref|YP_003901009.1| - 0.11 11.6 0.1 0.19 10.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4546) Symplekin_C PF12295.3 gi|307594693|ref|YP_003901010.1| - 0.0032 17.3 0.0 0.0039 17.1 0.0 1.0 1 0 0 1 1 1 1 Symplekin tight junction protein C terminal Pox_A_type_inc PF04508.7 gi|307594694|ref|YP_003901011.1| - 0.0003 20.3 0.5 0.0003 20.3 0.3 3.1 3 0 0 3 3 3 1 Viral A-type inclusion protein repeat XPC-binding PF09280.6 gi|307594694|ref|YP_003901011.1| - 0.0043 16.4 0.3 0.0043 16.4 0.2 1.9 2 0 0 2 2 2 1 XPC-binding domain HSBP1 PF06825.7 gi|307594694|ref|YP_003901011.1| - 0.29 10.7 2.7 2.4 7.8 0.9 2.3 1 1 1 2 2 2 0 Heat shock factor binding protein 1 Thermopsin PF05317.6 gi|307594695|ref|YP_003901012.1| - 1.4e-34 119.2 9.3 2.5e-33 115.1 6.4 2.2 1 1 0 1 1 1 1 Thermopsin Zn_peptidase_2 PF04298.7 gi|307594695|ref|YP_003901012.1| - 0.19 11.0 1.0 0.29 10.4 0.7 1.2 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase DUF1899 PF08953.6 gi|307594696|ref|YP_003901013.1| - 0.0039 16.7 0.2 0.014 15.0 0.2 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1899) SKG6 PF08693.5 gi|307594698|ref|YP_003901015.1| - 9.3 5.6 12.1 19 4.6 8.4 1.5 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Cytochrom_B562 PF07361.6 gi|307594700|ref|YP_003901017.1| - 0.0099 16.2 1.4 0.45 10.9 0.1 2.7 2 0 0 2 2 2 1 Cytochrome b562 SPOR PF05036.8 gi|307594700|ref|YP_003901017.1| - 0.071 13.2 0.3 1.2 9.3 0.1 2.5 2 0 0 2 2 2 0 Sporulation related domain LAGLIDADG_WhiA PF14527.1 gi|307594700|ref|YP_003901017.1| - 0.1 12.4 3.3 0.15 11.9 0.1 2.9 3 1 0 3 3 3 0 WhiA LAGLIDADG-like domain RMMBL PF07521.7 gi|307594700|ref|YP_003901017.1| - 0.1 12.4 0.1 0.4 10.5 0.0 2.1 2 0 0 2 2 2 0 RNA-metabolising metallo-beta-lactamase Vac_Fusion PF02346.11 gi|307594700|ref|YP_003901017.1| - 0.17 11.3 1.8 2.1 7.8 0.1 2.9 2 0 0 2 2 2 0 Chordopoxvirus fusion protein Pox_A_type_inc PF04508.7 gi|307594700|ref|YP_003901017.1| - 1.7 8.6 5.0 10 6.2 0.1 3.2 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Adeno_E3_CR2 PF02439.10 gi|307594701|ref|YP_003901018.1| - 0.0086 15.5 0.1 0.019 14.5 0.1 1.5 1 0 0 1 1 1 1 Adenovirus E3 region protein CR2 PaREP1 PF05942.6 gi|307594703|ref|YP_003901020.1| - 1.1e-24 86.4 1.8 1.7e-24 85.8 1.2 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SOR_SNZ PF01680.12 gi|307594704|ref|YP_003901021.1| - 1.8e-87 292.2 0.7 2.9e-87 291.6 0.5 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|307594704|ref|YP_003901021.1| - 6.4e-06 25.4 0.2 6.4e-06 25.4 0.1 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|307594704|ref|YP_003901021.1| - 0.00083 18.4 0.0 0.012 14.6 0.0 2.4 3 0 0 3 3 3 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|307594704|ref|YP_003901021.1| - 0.0012 18.1 1.3 1.2 8.3 0.0 3.0 2 1 1 3 3 3 2 Histidine biosynthesis protein Dus PF01207.12 gi|307594704|ref|YP_003901021.1| - 0.0045 15.8 0.8 0.49 9.1 0.0 3.0 3 0 0 3 3 3 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|307594704|ref|YP_003901021.1| - 0.024 13.7 0.3 0.024 13.7 0.2 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase OMPdecase PF00215.19 gi|307594704|ref|YP_003901021.1| - 0.034 13.5 0.2 0.27 10.6 0.0 2.3 2 1 0 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|307594704|ref|YP_003901021.1| - 0.052 12.5 0.8 0.28 10.1 0.0 2.3 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase SNO PF01174.14 gi|307594705|ref|YP_003901022.1| - 3.9e-52 176.6 0.0 4.6e-52 176.3 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.23 gi|307594705|ref|YP_003901022.1| - 1.8e-08 34.0 0.0 1.9e-07 30.7 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|307594705|ref|YP_003901022.1| - 1.8e-07 30.8 0.0 3e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|307594705|ref|YP_003901022.1| - 6.2e-06 26.0 0.0 9.1e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 BPL_N PF09825.4 gi|307594705|ref|YP_003901022.1| - 0.0099 14.7 0.0 0.049 12.4 0.0 1.8 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal PurS PF02700.9 gi|307594706|ref|YP_003901023.1| - 2.1e-09 37.2 0.0 2.5e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.1 gi|307594707|ref|YP_003901024.1| - 9.7e-37 126.2 0.0 4.6e-36 124.0 0.0 1.8 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|307594707|ref|YP_003901024.1| - 1.7e-07 30.9 0.0 3.5e-07 29.8 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|307594707|ref|YP_003901024.1| - 1e-05 25.1 0.0 1.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|307594707|ref|YP_003901024.1| - 1.6e-05 24.4 0.0 2.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|307594707|ref|YP_003901024.1| - 0.00027 20.2 0.0 0.00038 19.7 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|307594707|ref|YP_003901024.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 Peptidase C26 ATP-grasp PF02222.17 gi|307594708|ref|YP_003901025.1| - 3.8e-41 140.2 0.0 6.2e-41 139.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|307594708|ref|YP_003901025.1| - 9.7e-24 84.1 0.0 1.8e-23 83.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|307594708|ref|YP_003901025.1| - 5.7e-11 41.7 0.0 5.6e-06 25.3 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|307594708|ref|YP_003901025.1| - 6.8e-10 38.6 0.0 1.4e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|307594708|ref|YP_003901025.1| - 5.9e-09 35.5 0.0 1.2e-08 34.5 0.0 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|307594708|ref|YP_003901025.1| - 0.00011 21.7 0.0 0.00033 20.1 0.0 1.8 2 1 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|307594708|ref|YP_003901025.1| - 0.00013 21.8 0.0 0.00038 20.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_chain PF00289.17 gi|307594708|ref|YP_003901025.1| - 0.00079 19.5 0.3 0.0017 18.4 0.2 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|307594708|ref|YP_003901025.1| - 0.0029 16.7 0.0 0.0056 15.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|307594708|ref|YP_003901025.1| - 0.003 17.9 0.6 0.57 10.6 0.1 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|307594708|ref|YP_003901025.1| - 0.043 13.6 0.1 0.068 13.0 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|307594708|ref|YP_003901025.1| - 0.09 12.4 0.2 0.14 11.7 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|307594708|ref|YP_003901025.1| - 0.099 11.5 0.1 0.22 10.4 0.0 1.5 2 0 0 2 2 2 0 RmlD substrate binding domain Sugar_tr PF00083.19 gi|307594709|ref|YP_003901026.1| - 2.9e-42 144.7 29.0 3.6e-42 144.5 20.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|307594709|ref|YP_003901026.1| - 3.4e-18 65.5 53.9 3.1e-12 45.8 10.3 3.3 2 1 1 3 3 3 3 Major Facilitator Superfamily DUF1129 PF06570.6 gi|307594709|ref|YP_003901026.1| - 0.00018 20.9 1.4 0.00018 20.9 1.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1129) GARS_A PF01071.14 gi|307594710|ref|YP_003901027.1| - 9.8e-42 142.7 0.0 1.4e-41 142.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|307594710|ref|YP_003901027.1| - 1.5e-19 70.3 0.1 2.9e-19 69.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|307594710|ref|YP_003901027.1| - 2.4e-13 50.0 0.0 4.5e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|307594710|ref|YP_003901027.1| - 1.1e-06 28.5 0.0 5.7e-06 26.1 0.0 2.2 2 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|307594710|ref|YP_003901027.1| - 4.2e-06 25.7 0.0 6.4e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|307594710|ref|YP_003901027.1| - 0.00012 22.0 0.0 0.00054 19.8 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|307594710|ref|YP_003901027.1| - 0.01 15.1 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain SAICAR_synt PF01259.13 gi|307594711|ref|YP_003901028.1| - 9.8e-54 182.0 0.0 1.2e-53 181.7 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase AIRS_C PF02769.17 gi|307594712|ref|YP_003901029.1| - 1.8e-17 63.7 0.1 3.6e-17 62.7 0.0 1.5 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|307594712|ref|YP_003901029.1| - 1e-12 48.0 0.4 3.2e-12 46.5 0.3 1.8 1 1 0 1 1 1 1 AIR synthase related protein, N-terminal domain Pribosyltran PF00156.22 gi|307594713|ref|YP_003901030.1| - 8.1e-18 64.3 0.2 1.6e-17 63.3 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|307594713|ref|YP_003901030.1| - 0.003 16.9 0.0 0.013 14.7 0.0 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase GATase_7 PF13537.1 gi|307594714|ref|YP_003901031.1| - 3e-16 59.3 0.0 5.6e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|307594714|ref|YP_003901031.1| - 8.6e-15 54.8 0.0 1.5e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|307594714|ref|YP_003901031.1| - 1.1e-10 41.2 0.3 2.9e-10 39.9 0.2 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.16 gi|307594714|ref|YP_003901031.1| - 2.3e-06 26.6 0.0 0.00062 18.5 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferases class-II AIRS_C PF02769.17 gi|307594715|ref|YP_003901032.1| - 8.3e-45 152.5 1.4 1e-25 90.5 0.6 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|307594715|ref|YP_003901032.1| - 3.3e-38 129.8 0.2 9.1e-22 77.1 0.0 2.6 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain AIRC PF00731.15 gi|307594716|ref|YP_003901033.1| - 1.8e-66 222.0 0.2 2e-66 221.9 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase HEAT_2 PF13646.1 gi|307594716|ref|YP_003901033.1| - 0.037 14.3 0.1 3.5 7.9 0.0 2.2 2 0 0 2 2 2 0 HEAT repeats ATP-grasp PF02222.17 gi|307594717|ref|YP_003901034.1| - 5.3e-52 175.6 0.0 7.6e-52 175.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|307594717|ref|YP_003901034.1| - 1.1e-13 51.3 0.1 1.7e-13 50.6 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|307594717|ref|YP_003901034.1| - 4.4e-05 22.9 0.0 0.00012 21.5 0.0 1.7 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|307594717|ref|YP_003901034.1| - 6.6e-05 22.8 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|307594717|ref|YP_003901034.1| - 0.00018 20.8 0.0 0.00028 20.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain 2-Hacid_dh_C PF02826.14 gi|307594717|ref|YP_003901034.1| - 0.0017 17.5 0.0 0.0031 16.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|307594717|ref|YP_003901034.1| - 0.021 14.6 0.0 0.048 13.5 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ATPgrasp_Ter PF15632.1 gi|307594717|ref|YP_003901034.1| - 0.067 11.9 0.0 1 8.0 0.0 2.4 3 0 0 3 3 3 0 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.6 gi|307594717|ref|YP_003901034.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 1 1 0 1 1 1 0 RimK-like ATP-grasp domain QueC PF06508.8 gi|307594719|ref|YP_003901036.1| - 9e-56 188.4 0.0 1.2e-55 188.0 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.1 gi|307594719|ref|YP_003901036.1| - 5.4e-14 51.9 0.0 1.1e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|307594719|ref|YP_003901036.1| - 2.2e-11 43.8 0.0 4.8e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.9 gi|307594719|ref|YP_003901036.1| - 4e-07 29.6 0.0 1.2e-06 28.1 0.0 1.9 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|307594719|ref|YP_003901036.1| - 3.7e-05 22.4 0.0 0.00014 20.5 0.0 2.0 1 1 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|307594719|ref|YP_003901036.1| - 0.0047 16.4 0.0 0.0086 15.5 0.0 1.4 1 0 0 1 1 1 1 PP-loop family Asn_synthase PF00733.16 gi|307594719|ref|YP_003901036.1| - 0.0064 16.0 0.0 0.0098 15.4 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase DUF1059 PF06348.6 gi|307594719|ref|YP_003901036.1| - 0.082 12.7 0.5 0.23 11.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1059) Fer4_14 PF13394.1 gi|307594720|ref|YP_003901037.1| - 4.3e-18 65.4 0.0 6.5e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|307594720|ref|YP_003901037.1| - 7.4e-15 55.5 0.0 9e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|307594720|ref|YP_003901037.1| - 2.3e-08 34.2 0.0 3.1e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain ApbA_C PF08546.6 gi|307594721|ref|YP_003901038.1| - 7.1e-39 132.6 0.1 1.3e-38 131.8 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|307594721|ref|YP_003901038.1| - 1.8e-13 50.1 2.0 9e-13 47.9 0.3 2.5 2 1 1 3 3 3 1 Ketopantoate reductase PanE/ApbA DBI_PRT PF02277.12 gi|307594722|ref|YP_003901039.1| - 5.5e-32 111.1 2.7 8e-32 110.6 1.9 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase Pantoate_transf PF02548.10 gi|307594723|ref|YP_003901040.1| - 9.1e-112 372.4 0.9 1e-111 372.2 0.6 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|307594723|ref|YP_003901040.1| - 8.3e-10 38.2 1.7 6e-09 35.4 1.2 2.2 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase PA PF02225.17 gi|307594723|ref|YP_003901040.1| - 0.42 10.3 2.6 2.8 7.6 0.1 3.0 2 2 1 3 3 3 0 PA domain DUF137 PF02006.11 gi|307594724|ref|YP_003901041.1| - 9.6e-81 269.4 2.3 1.2e-80 269.1 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Radical_SAM PF04055.16 gi|307594724|ref|YP_003901041.1| - 0.044 13.9 0.2 0.09 12.9 0.1 1.5 1 1 0 1 1 1 0 Radical SAM superfamily GHMP_kinases_N PF00288.21 gi|307594725|ref|YP_003901042.1| - 0.0013 18.7 0.9 0.0023 17.9 0.6 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain Tir_receptor_C PF07489.6 gi|307594725|ref|YP_003901042.1| - 0.0094 15.7 0.2 0.016 15.0 0.1 1.3 1 0 0 1 1 1 1 Translocated intimin receptor (Tir) C-terminus Histidinol_dh PF00815.15 gi|307594726|ref|YP_003901043.1| - 7.9e-99 331.0 0.3 1.1e-97 327.3 0.2 1.9 1 1 0 1 1 1 1 Histidinol dehydrogenase DUF1837 PF08878.6 gi|307594726|ref|YP_003901043.1| - 0.0037 16.8 0.0 0.0066 16.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1837) GATase PF00117.23 gi|307594727|ref|YP_003901044.1| - 3.1e-25 88.7 0.0 3.5e-25 88.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|307594727|ref|YP_003901044.1| - 0.00022 20.7 0.0 0.033 13.6 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.9 gi|307594727|ref|YP_003901044.1| - 0.0034 17.0 0.0 0.0049 16.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|307594727|ref|YP_003901044.1| - 0.007 16.0 0.0 0.088 12.4 0.0 2.1 2 0 0 2 2 2 1 SNO glutamine amidotransferase family PRA-PH PF01503.12 gi|307594728|ref|YP_003901045.1| - 5.9e-16 58.5 0.0 6.8e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|307594728|ref|YP_003901045.1| - 5.5e-06 26.2 0.2 9.6e-06 25.4 0.2 1.4 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-CH PF01502.13 gi|307594729|ref|YP_003901046.1| - 3.5e-32 109.8 0.2 5.2e-32 109.2 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase His_biosynth PF00977.16 gi|307594730|ref|YP_003901047.1| - 1.3e-79 266.6 1.5 1.5e-79 266.4 1.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|307594730|ref|YP_003901047.1| - 2.5e-08 33.1 0.1 0.00014 20.8 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|307594730|ref|YP_003901047.1| - 1e-07 31.4 3.2 8.3e-05 21.8 0.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.9 gi|307594730|ref|YP_003901047.1| - 8.1e-06 25.0 0.9 0.0065 15.5 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|307594730|ref|YP_003901047.1| - 1.8e-05 24.1 0.7 0.0011 18.2 0.0 2.3 2 0 0 2 2 2 1 PcrB family TMP-TENI PF02581.12 gi|307594730|ref|YP_003901047.1| - 2.8e-05 23.2 0.1 0.16 11.1 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|307594730|ref|YP_003901047.1| - 0.00017 20.7 0.2 0.0038 16.2 0.0 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase PEP_mutase PF13714.1 gi|307594730|ref|YP_003901047.1| - 0.0047 16.1 1.2 3.7 6.7 0.0 3.1 2 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase G3P_antiterm PF04309.7 gi|307594730|ref|YP_003901047.1| - 0.0063 15.5 0.1 0.55 9.2 0.0 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IGPD PF00475.13 gi|307594731|ref|YP_003901048.1| - 3.7e-49 166.3 0.1 4.6e-49 166.0 0.1 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|307594732|ref|YP_003901049.1| - 7.7e-42 143.1 0.8 8.8e-42 142.9 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|307594732|ref|YP_003901049.1| - 4e-05 22.9 1.4 0.067 12.4 0.0 2.1 2 0 0 2 2 2 2 PcrB family Trp_syntA PF00290.15 gi|307594732|ref|YP_003901049.1| - 8.7e-05 21.1 0.3 0.25 9.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain Dus PF01207.12 gi|307594732|ref|YP_003901049.1| - 0.0094 14.8 0.0 0.035 12.9 0.0 1.7 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) BtpA PF03437.10 gi|307594732|ref|YP_003901049.1| - 0.095 11.9 0.4 0.33 10.1 0.1 1.9 2 1 1 3 3 3 0 BtpA family HisG PF01634.13 gi|307594733|ref|YP_003901050.1| - 6.1e-45 152.7 0.2 7.8e-45 152.3 0.2 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|307594733|ref|YP_003901050.1| - 2.1e-19 69.2 0.6 2.1e-19 69.2 0.4 2.1 2 0 0 2 2 2 1 HisG, C-terminal domain Aminotran_1_2 PF00155.16 gi|307594734|ref|YP_003901051.1| - 3e-49 167.9 0.0 3.6e-49 167.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|307594734|ref|YP_003901051.1| - 0.0075 14.9 0.0 0.0096 14.6 0.0 1.1 1 0 0 1 1 1 1 Allinase MFS_1 PF07690.11 gi|307594735|ref|YP_003901052.1| - 1.1e-20 73.6 51.1 1.1e-20 73.6 35.4 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307594735|ref|YP_003901052.1| - 6.3e-18 64.5 36.3 2.6e-16 59.2 11.5 2.7 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|307594735|ref|YP_003901052.1| - 0.0021 17.8 7.4 0.066 13.0 0.3 4.1 3 1 0 3 3 3 2 MFS_1 like family TPPK_C PF12555.3 gi|307594735|ref|YP_003901052.1| - 0.027 14.1 0.3 0.027 14.1 0.2 5.7 5 2 3 8 8 8 0 Thiamine pyrophosphokinase C terminal OATP PF03137.15 gi|307594735|ref|YP_003901052.1| - 3.7 5.4 13.0 0.54 8.2 2.8 2.3 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family PALP PF00291.20 gi|307594736|ref|YP_003901053.1| - 1.1e-71 241.6 1.1 1.4e-71 241.2 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme OrfB_Zn_ribbon PF07282.6 gi|307594736|ref|YP_003901053.1| - 0.01 15.4 0.1 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|307594736|ref|YP_003901053.1| - 0.016 14.4 3.4 0.13 11.5 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|307594736|ref|YP_003901053.1| - 0.045 13.0 0.4 0.097 12.0 0.3 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|307594736|ref|YP_003901053.1| - 0.064 12.7 1.7 0.16 11.5 1.2 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|307594736|ref|YP_003901053.1| - 0.089 12.6 0.3 0.16 11.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|307594736|ref|YP_003901053.1| - 0.1 12.3 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|307594736|ref|YP_003901053.1| - 0.19 11.4 1.8 11 5.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|307594736|ref|YP_003901053.1| - 0.73 9.4 5.2 7.5 6.1 0.2 2.3 1 1 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|307594736|ref|YP_003901053.1| - 4 7.1 5.5 27 4.5 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Homoserine_dh PF00742.14 gi|307594737|ref|YP_003901054.1| - 2.4e-46 157.6 0.0 3.5e-46 157.1 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|307594737|ref|YP_003901054.1| - 5e-07 30.1 0.0 3.8e-06 27.2 0.0 2.2 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|307594737|ref|YP_003901054.1| - 0.074 13.5 0.0 0.25 11.8 0.0 1.9 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|307594738|ref|YP_003901055.1| - 6.7e-28 97.4 0.0 9.8e-28 96.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|307594738|ref|YP_003901055.1| - 7.8e-23 81.2 0.0 1.2e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|307594738|ref|YP_003901055.1| - 0.0034 17.2 0.0 0.0064 16.3 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|307594738|ref|YP_003901055.1| - 0.015 15.3 0.0 0.03 14.3 0.0 1.6 1 1 0 1 1 1 0 NADH(P)-binding DXP_reductoisom PF02670.11 gi|307594738|ref|YP_003901055.1| - 0.051 14.1 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase AA_kinase PF00696.23 gi|307594739|ref|YP_003901056.1| - 1.4e-37 129.5 0.0 1.8e-37 129.2 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family HALZ PF02183.13 gi|307594740|ref|YP_003901057.1| - 4.8e-06 26.1 3.4 2.5e-05 23.8 1.1 2.2 1 1 1 2 2 2 1 Homeobox associated leucine zipper GAS PF13851.1 gi|307594740|ref|YP_003901057.1| - 0.0013 17.9 0.4 0.002 17.3 0.3 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding TBPIP PF07106.8 gi|307594740|ref|YP_003901057.1| - 0.0076 15.8 0.2 0.011 15.3 0.1 1.2 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Prefoldin_2 PF01920.15 gi|307594740|ref|YP_003901057.1| - 0.02 14.6 0.7 0.057 13.1 0.1 1.5 1 1 1 2 2 2 0 Prefoldin subunit TMF_TATA_bd PF12325.3 gi|307594740|ref|YP_003901057.1| - 0.033 13.9 0.1 0.052 13.2 0.1 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DivIC PF04977.10 gi|307594740|ref|YP_003901057.1| - 0.043 13.3 0.1 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 Septum formation initiator WXG100 PF06013.7 gi|307594740|ref|YP_003901057.1| - 0.059 13.3 0.3 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Proteins of 100 residues with WXG DUF904 PF06005.7 gi|307594740|ref|YP_003901057.1| - 0.1 12.9 0.4 0.19 12.0 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF904) IFT57 PF10498.4 gi|307594740|ref|YP_003901057.1| - 0.16 10.6 1.9 0.23 10.1 1.3 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Cep57_MT_bd PF06657.8 gi|307594740|ref|YP_003901057.1| - 0.7 9.8 3.9 8.4 6.4 2.7 2.2 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 FliD_N PF02465.13 gi|307594740|ref|YP_003901057.1| - 1.2 9.5 5.3 0.66 10.3 1.5 2.0 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Baculo_PEP_C PF04513.7 gi|307594740|ref|YP_003901057.1| - 8.4 6.2 7.6 0.45 10.3 0.8 2.0 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4389 PF14333.1 gi|307594741|ref|YP_003901058.1| - 0.22 11.2 2.3 0.23 11.1 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4389) GntP_permease PF02447.11 gi|307594741|ref|YP_003901058.1| - 0.3 9.5 3.7 0.3 9.5 2.6 1.0 1 0 0 1 1 1 0 GntP family permease Pribosyltran PF00156.22 gi|307594744|ref|YP_003901061.1| - 1.2e-19 70.2 0.2 1.7e-19 69.8 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|307594744|ref|YP_003901061.1| - 0.012 14.8 0.0 0.017 14.3 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase GMP_synt_C PF00958.17 gi|307594745|ref|YP_003901062.1| - 9.2e-24 82.9 0.1 5.2e-23 80.5 0.1 2.2 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|307594745|ref|YP_003901062.1| - 1.1e-11 44.1 0.0 2.6e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.15 gi|307594745|ref|YP_003901062.1| - 5.9e-06 25.9 0.0 8.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.9 gi|307594745|ref|YP_003901062.1| - 0.00089 18.7 0.0 0.0063 15.9 0.0 2.3 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|307594745|ref|YP_003901062.1| - 0.0013 18.1 0.0 0.3 10.3 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|307594745|ref|YP_003901062.1| - 0.0022 16.5 0.0 0.2 10.1 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase GATase PF00117.23 gi|307594746|ref|YP_003901063.1| - 2.5e-33 115.1 0.0 2.8e-33 115.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|307594746|ref|YP_003901063.1| - 1.4e-13 50.8 0.0 3.5e-12 46.2 0.0 2.3 1 1 1 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|307594746|ref|YP_003901063.1| - 0.11 11.9 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family AA_permease_2 PF13520.1 gi|307594747|ref|YP_003901064.1| - 3.1e-23 82.0 70.1 4.2e-23 81.5 48.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|307594747|ref|YP_003901064.1| - 0.00021 19.7 64.1 0.0003 19.2 44.5 1.2 1 1 0 1 1 1 1 Amino acid permease Amidohydro_1 PF01979.15 gi|307594748|ref|YP_003901065.1| - 5.7e-21 75.5 0.0 8.8e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|307594748|ref|YP_003901065.1| - 1.4e-10 40.8 0.3 5.4e-10 38.9 0.0 2.2 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|307594748|ref|YP_003901065.1| - 8.8e-08 32.4 0.0 0.0054 16.8 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|307594748|ref|YP_003901065.1| - 9.6e-05 21.7 0.0 0.13 11.4 0.0 2.8 2 1 0 2 2 2 2 Amidohydrolase family TauE PF01925.14 gi|307594749|ref|YP_003901066.1| - 1.1e-38 133.0 32.2 1.1e-38 133.0 22.3 1.9 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE DUF1634 PF07843.6 gi|307594750|ref|YP_003901067.1| - 4.2e-29 100.2 8.0 5e-29 100.0 5.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) Renin_r PF07850.9 gi|307594750|ref|YP_003901067.1| - 1.7 9.0 7.2 1.9 8.8 0.7 2.5 2 1 1 3 3 3 0 Renin receptor-like protein DoxX_3 PF13781.1 gi|307594750|ref|YP_003901067.1| - 4.5 7.6 11.7 2.1 8.7 4.5 2.1 1 1 0 2 2 2 0 DoxX-like family EamA PF00892.15 gi|307594751|ref|YP_003901068.1| - 8e-20 71.1 35.3 2.4e-15 56.6 8.0 2.7 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|307594751|ref|YP_003901068.1| - 1e-06 28.8 36.4 0.0002 21.5 7.5 3.1 2 1 1 3 3 3 2 Multidrug resistance efflux transporter DUF3272 PF11676.3 gi|307594751|ref|YP_003901068.1| - 0.32 11.0 6.5 0.37 10.8 0.3 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3272) MFS_1 PF07690.11 gi|307594752|ref|YP_003901069.1| - 1.5e-28 99.5 42.9 1.5e-28 99.5 29.7 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Thermopsin PF05317.6 gi|307594753|ref|YP_003901070.1| - 2.1e-54 184.2 7.9 2.1e-54 184.2 5.4 2.3 2 0 0 2 2 2 1 Thermopsin DUF996 PF06195.8 gi|307594754|ref|YP_003901071.1| - 1.3e-27 96.4 22.7 3.4e-27 95.1 12.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF973 PF06157.6 gi|307594754|ref|YP_003901071.1| - 0.0013 17.8 20.0 0.0027 16.7 5.2 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF973) DUF1516 PF07457.6 gi|307594754|ref|YP_003901071.1| - 0.17 11.9 7.8 0.29 11.2 2.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1516) DUF606 PF04657.8 gi|307594754|ref|YP_003901071.1| - 0.18 11.8 13.3 0.14 12.2 6.2 2.3 1 1 1 2 2 2 0 Protein of unknown function, DUF606 DUF2752 PF10825.3 gi|307594754|ref|YP_003901071.1| - 0.3 11.1 0.2 0.3 11.1 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) Cation_ATPase_C PF00689.16 gi|307594754|ref|YP_003901071.1| - 1.6 8.2 14.6 0.11 11.9 5.6 2.2 1 1 0 2 2 2 0 Cation transporting ATPase, C-terminus DUF2975 PF11188.3 gi|307594754|ref|YP_003901071.1| - 5 6.8 23.3 2 8.1 10.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) DUF373 PF04123.8 gi|307594754|ref|YP_003901071.1| - 6.2 5.7 14.9 25 3.7 10.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF373) tRNA_int_endo PF01974.12 gi|307594755|ref|YP_003901072.1| - 1.3e-23 82.6 0.0 2e-23 81.9 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|307594755|ref|YP_003901072.1| - 6.5e-19 67.2 0.1 1e-18 66.6 0.1 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|307594755|ref|YP_003901072.1| - 0.1 12.0 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term Molydop_binding PF01568.16 gi|307594756|ref|YP_003901073.1| - 2.4e-05 24.1 1.2 0.01 15.6 0.2 2.1 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|307594756|ref|YP_003901073.1| - 0.0021 17.9 0.1 0.033 14.1 0.1 2.0 1 1 1 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain DUF498 PF04430.9 gi|307594756|ref|YP_003901073.1| - 0.11 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) TT_ORF1 PF02956.9 gi|307594756|ref|YP_003901073.1| - 0.17 10.3 1.7 0.2 10.0 1.2 1.1 1 0 0 1 1 1 0 TT viral orf 1 zf-C2HC5 PF06221.8 gi|307594757|ref|YP_003901074.1| - 6.5e-05 22.6 15.8 0.0063 16.2 3.1 2.4 1 1 1 2 2 2 2 Putative zinc finger motif, C2HC5-type zf-B_box PF00643.19 gi|307594757|ref|YP_003901074.1| - 9e-05 22.2 23.3 0.002 17.9 2.0 3.9 3 1 1 4 4 4 3 B-box zinc finger IBD PF10416.4 gi|307594757|ref|YP_003901074.1| - 0.026 14.3 0.3 0.037 13.8 0.2 1.1 1 0 0 1 1 1 0 Transcription-initiator DNA-binding domain IBD zf-HIT PF04438.11 gi|307594757|ref|YP_003901074.1| - 0.056 13.0 3.9 0.056 13.0 2.7 3.4 3 1 0 3 3 3 0 HIT zinc finger FYVE PF01363.16 gi|307594757|ref|YP_003901074.1| - 0.41 10.5 31.2 4.5 7.2 6.6 3.7 1 1 1 2 2 2 0 FYVE zinc finger Prok-RING_2 PF14445.1 gi|307594757|ref|YP_003901074.1| - 3.9 7.5 24.0 0.56 10.2 7.5 2.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 zf-UBP PF02148.14 gi|307594757|ref|YP_003901074.1| - 3.9 7.6 16.3 6.8 6.8 1.2 3.0 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DUF3795 PF12675.2 gi|307594757|ref|YP_003901074.1| - 5.7 7.1 18.9 13 6.0 7.7 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3795) zf-C3HC4_2 PF13923.1 gi|307594757|ref|YP_003901074.1| - 7.4 6.6 21.1 53 3.9 6.3 3.6 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF2180 PF09947.4 gi|307594757|ref|YP_003901074.1| - 9.6 6.0 22.7 2.6 7.8 1.7 3.6 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2180) zf-C3HC4_3 PF13920.1 gi|307594757|ref|YP_003901074.1| - 9.7 5.9 26.6 7.8 6.2 6.1 2.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) CBS PF00571.23 gi|307594758|ref|YP_003901075.1| - 8e-34 115.1 1.1 6.5e-16 57.8 0.0 2.5 2 0 0 2 2 2 2 CBS domain HrcA_DNA-bdg PF03444.10 gi|307594758|ref|YP_003901075.1| - 9.3e-27 92.2 0.2 2.1e-26 91.1 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|307594758|ref|YP_003901075.1| - 5.1e-10 39.3 0.3 1.4e-09 37.8 0.0 1.9 2 0 0 2 2 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|307594758|ref|YP_003901075.1| - 7.6e-10 38.2 0.0 3.8e-09 36.0 0.0 2.2 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|307594758|ref|YP_003901075.1| - 1.9e-05 24.2 0.2 9.8e-05 21.9 0.1 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|307594758|ref|YP_003901075.1| - 2.3e-05 23.9 0.0 0.0001 21.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|307594758|ref|YP_003901075.1| - 2.4e-05 23.6 0.5 6.9e-05 22.1 0.0 2.2 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.1 gi|307594758|ref|YP_003901075.1| - 0.00012 21.6 0.0 0.00024 20.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.14 gi|307594758|ref|YP_003901075.1| - 0.00016 21.5 0.1 0.00042 20.1 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.7 gi|307594758|ref|YP_003901075.1| - 0.00035 20.6 0.1 0.0031 17.6 0.0 2.4 3 0 0 3 3 2 1 FaeA-like protein Phage_terminase PF10668.4 gi|307594758|ref|YP_003901075.1| - 0.0013 18.5 0.0 0.0029 17.3 0.0 1.6 1 0 0 1 1 1 1 Phage terminase small subunit Sigma70_r4_2 PF08281.7 gi|307594758|ref|YP_003901075.1| - 0.002 17.5 0.2 0.023 14.1 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_27 PF13463.1 gi|307594758|ref|YP_003901075.1| - 0.0025 18.0 0.0 0.0062 16.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|307594758|ref|YP_003901075.1| - 0.003 16.9 0.0 0.0082 15.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|307594758|ref|YP_003901075.1| - 0.0032 17.0 0.0 0.011 15.3 0.0 2.0 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|307594758|ref|YP_003901075.1| - 0.0065 16.1 0.0 0.015 14.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|307594758|ref|YP_003901075.1| - 0.0099 15.6 0.0 0.046 13.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain PaaX PF07848.7 gi|307594758|ref|YP_003901075.1| - 0.029 14.3 0.0 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 PaaX-like protein HTH_23 PF13384.1 gi|307594758|ref|YP_003901075.1| - 0.045 13.4 0.1 0.25 11.0 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain FeoC PF09012.5 gi|307594758|ref|YP_003901075.1| - 0.057 13.1 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_34 PF13601.1 gi|307594758|ref|YP_003901075.1| - 0.061 13.3 0.0 0.19 11.7 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.14 gi|307594758|ref|YP_003901075.1| - 0.071 12.4 0.0 0.31 10.3 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Put_DNA-bind_N PF06971.8 gi|307594758|ref|YP_003901075.1| - 0.091 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_28 PF13518.1 gi|307594758|ref|YP_003901075.1| - 0.15 12.1 0.0 0.4 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PALP PF00291.20 gi|307594759|ref|YP_003901076.1| - 2.6e-26 92.5 2.7 1.2e-25 90.3 0.9 2.6 2 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme TrmB PF01978.14 gi|307594759|ref|YP_003901076.1| - 0.0038 16.9 0.3 0.074 12.7 0.1 3.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF2934 PF11154.3 gi|307594759|ref|YP_003901076.1| - 0.082 12.2 0.5 7.9 5.9 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2934) zinc_ribbon_2 PF13240.1 gi|307594759|ref|YP_003901076.1| - 0.45 10.0 4.8 3.9 7.0 3.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF87 PF01935.12 gi|307594760|ref|YP_003901077.1| - 2.7e-37 128.7 0.2 4.7e-37 128.0 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|307594760|ref|YP_003901077.1| - 6.5e-23 81.6 0.0 8.7e-23 81.1 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|307594760|ref|YP_003901077.1| - 1.1e-08 34.8 0.0 0.00057 19.4 0.0 2.6 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|307594760|ref|YP_003901077.1| - 3.5e-06 25.8 0.0 0.00013 20.6 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.9 gi|307594760|ref|YP_003901077.1| - 3.5e-05 22.5 0.0 5.2e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer DUF853 PF05872.7 gi|307594760|ref|YP_003901077.1| - 6.1e-05 21.5 0.1 0.055 11.8 0.0 2.6 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|307594760|ref|YP_003901077.1| - 6.9e-05 22.4 0.1 0.053 12.9 0.0 2.7 3 1 0 3 3 3 2 Zonular occludens toxin (Zot) ResIII PF04851.10 gi|307594760|ref|YP_003901077.1| - 0.0024 17.7 0.0 0.013 15.3 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|307594760|ref|YP_003901077.1| - 0.006 16.7 0.1 0.82 9.8 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA PF00004.24 gi|307594760|ref|YP_003901077.1| - 0.014 15.6 0.2 0.06 13.5 0.0 2.2 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|307594760|ref|YP_003901077.1| - 0.016 14.7 0.0 0.078 12.4 0.0 2.0 2 0 0 2 2 2 0 DEAD/DEAH box helicase CbiA PF01656.18 gi|307594760|ref|YP_003901077.1| - 0.019 14.3 0.0 0.047 13.0 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|307594760|ref|YP_003901077.1| - 0.026 13.9 0.0 6.7 6.0 0.0 2.6 3 0 0 3 3 3 0 AAA domain Metallophos PF00149.23 gi|307594761|ref|YP_003901078.1| - 1.3e-13 50.7 0.3 2.4e-13 49.9 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|307594761|ref|YP_003901078.1| - 9.5e-12 45.0 0.1 1.6e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HAD PF12710.2 gi|307594761|ref|YP_003901078.1| - 0.091 12.9 0.0 0.21 11.7 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase SMC_N PF02463.14 gi|307594762|ref|YP_003901079.1| - 1.9e-23 82.8 0.0 1.6e-22 79.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|307594762|ref|YP_003901079.1| - 5.4e-21 75.8 18.6 1e-20 74.9 0.2 4.3 2 2 1 3 3 3 1 AAA domain AAA_13 PF13166.1 gi|307594762|ref|YP_003901079.1| - 1.6e-18 66.5 3.4 1.3e-05 23.9 0.0 5.0 2 1 2 4 4 4 3 AAA domain AAA_21 PF13304.1 gi|307594762|ref|YP_003901079.1| - 4.1e-14 53.2 0.0 1.4e-07 31.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|307594762|ref|YP_003901079.1| - 2.2e-12 46.7 0.0 5.2e-07 29.0 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain Baculo_PEP_C PF04513.7 gi|307594762|ref|YP_003901079.1| - 2e-11 43.8 0.5 0.099 12.4 0.0 5.5 3 2 2 6 6 6 3 Baculovirus polyhedron envelope protein, PEP, C terminus ABC_tran PF00005.22 gi|307594762|ref|YP_003901079.1| - 4e-07 30.3 5.2 0.015 15.6 0.0 4.3 4 1 0 4 4 3 2 ABC transporter IncA PF04156.9 gi|307594762|ref|YP_003901079.1| - 1.4e-06 28.0 63.2 0.003 17.2 16.2 4.5 1 1 3 4 4 4 3 IncA protein Spc7 PF08317.6 gi|307594762|ref|YP_003901079.1| - 2.2e-05 23.3 34.0 0.015 14.0 4.8 4.9 2 2 3 5 5 5 4 Spc7 kinetochore protein AAA_29 PF13555.1 gi|307594762|ref|YP_003901079.1| - 3.2e-05 23.3 0.0 6.2e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain APG6 PF04111.7 gi|307594762|ref|YP_003901079.1| - 3.2e-05 23.1 31.0 0.14 11.1 1.8 4.4 2 2 2 4 4 4 3 Autophagy protein Apg6 SbcCD_C PF13558.1 gi|307594762|ref|YP_003901079.1| - 0.00011 22.0 0.0 0.00037 20.3 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Rad50_zn_hook PF04423.9 gi|307594762|ref|YP_003901079.1| - 0.00021 20.6 9.3 0.001 18.4 0.1 5.1 6 0 0 6 6 3 1 Rad50 zinc hook motif BLOC1_2 PF10046.4 gi|307594762|ref|YP_003901079.1| - 0.00022 21.3 12.8 0.19 11.8 1.6 6.4 3 3 2 6 6 6 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|307594762|ref|YP_003901079.1| - 0.00025 20.3 8.3 0.25 10.5 1.7 4.5 1 1 4 6 6 6 2 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|307594762|ref|YP_003901079.1| - 0.0004 20.5 1.4 50 4.2 0.3 6.8 4 3 3 7 7 7 0 Nucleopolyhedrovirus P10 protein Myosin_tail_1 PF01576.14 gi|307594762|ref|YP_003901079.1| - 0.00064 17.6 51.1 0.0036 15.1 8.2 3.8 2 2 0 2 2 2 1 Myosin tail GAS PF13851.1 gi|307594762|ref|YP_003901079.1| - 0.0016 17.6 35.5 0.34 10.0 7.9 5.3 2 2 4 6 6 6 3 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.4 gi|307594762|ref|YP_003901079.1| - 0.0039 17.0 5.2 0.0039 17.0 3.6 6.9 2 2 5 7 7 7 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_II PF06009.7 gi|307594762|ref|YP_003901079.1| - 0.0058 16.4 20.0 0.018 14.8 0.8 5.7 2 1 2 6 6 6 1 Laminin Domain II Snapin_Pallidin PF14712.1 gi|307594762|ref|YP_003901079.1| - 0.0073 16.5 26.0 1.5 9.1 2.2 6.7 3 2 5 8 8 8 2 Snapin/Pallidin Bacillus_HBL PF05791.6 gi|307594762|ref|YP_003901079.1| - 0.0073 15.6 2.4 3.3 7.0 0.3 4.6 3 2 3 6 6 6 0 Bacillus haemolytic enterotoxin (HBL) Nup54 PF13874.1 gi|307594762|ref|YP_003901079.1| - 0.01 15.5 8.0 0.01 15.5 5.6 6.1 2 2 5 7 7 7 0 Nucleoporin complex subunit 54 TBPIP PF07106.8 gi|307594762|ref|YP_003901079.1| - 0.013 15.0 28.2 1.1 8.7 2.0 6.2 2 2 3 6 6 6 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Atg14 PF10186.4 gi|307594762|ref|YP_003901079.1| - 0.02 13.8 42.3 0.029 13.3 0.9 4.4 1 1 0 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 Sec34 PF04136.10 gi|307594762|ref|YP_003901079.1| - 0.031 13.9 11.9 4 7.1 1.3 4.9 2 2 4 6 6 6 0 Sec34-like family AAA_19 PF13245.1 gi|307594762|ref|YP_003901079.1| - 0.042 13.6 0.7 0.8 9.4 0.0 2.7 2 0 0 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|307594762|ref|YP_003901079.1| - 0.047 13.8 0.0 0.24 11.5 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|307594762|ref|YP_003901079.1| - 0.054 13.1 0.1 0.61 9.7 0.0 2.7 3 0 0 3 3 3 0 NACHT domain IFT57 PF10498.4 gi|307594762|ref|YP_003901079.1| - 0.072 11.8 24.1 0.85 8.2 2.3 4.2 3 2 1 4 4 4 0 Intra-flagellar transport protein 57 HOOK PF05622.7 gi|307594762|ref|YP_003901079.1| - 0.086 10.6 38.1 0.0054 14.6 13.1 2.3 2 0 0 2 2 2 0 HOOK protein Seryl_tRNA_N PF02403.17 gi|307594762|ref|YP_003901079.1| - 0.098 12.6 39.7 0.81 9.7 0.5 6.7 3 2 4 8 8 7 0 Seryl-tRNA synthetase N-terminal domain FlxA PF14282.1 gi|307594762|ref|YP_003901079.1| - 0.11 12.4 1.7 12 5.9 0.1 3.6 3 1 1 4 4 3 0 FlxA-like protein Syntaxin PF00804.20 gi|307594762|ref|YP_003901079.1| - 0.11 12.6 20.1 0.77 9.9 0.6 6.1 3 2 1 4 4 4 0 Syntaxin Fib_alpha PF08702.5 gi|307594762|ref|YP_003901079.1| - 0.23 11.6 8.1 0.51 10.4 1.0 3.9 2 2 1 4 4 3 0 Fibrinogen alpha/beta chain family DUF342 PF03961.8 gi|307594762|ref|YP_003901079.1| - 0.25 9.6 26.4 0.96 7.7 1.1 4.4 1 1 0 4 4 4 0 Protein of unknown function (DUF342) DUF1319 PF07028.6 gi|307594762|ref|YP_003901079.1| - 0.48 10.6 31.8 0.72 10.0 0.1 7.6 1 1 3 5 5 4 0 Protein of unknown function (DUF1319) AAA_22 PF13401.1 gi|307594762|ref|YP_003901079.1| - 0.58 10.3 0.0 0.58 10.3 0.0 4.0 4 1 0 4 4 4 0 AAA domain Tropomyosin_1 PF12718.2 gi|307594762|ref|YP_003901079.1| - 0.85 9.4 46.4 0.56 10.0 13.1 5.4 2 2 2 5 5 5 0 Tropomyosin like DUF1664 PF07889.7 gi|307594762|ref|YP_003901079.1| - 2.1 8.1 15.3 14 5.4 0.3 6.1 3 2 4 8 8 8 0 Protein of unknown function (DUF1664) DUF972 PF06156.8 gi|307594762|ref|YP_003901079.1| - 2.4 8.5 30.1 0.55 10.6 3.4 6.5 2 2 3 6 6 6 0 Protein of unknown function (DUF972) V_ATPase_I PF01496.14 gi|307594762|ref|YP_003901079.1| - 3.4 5.4 27.6 0.18 9.6 5.2 3.7 2 2 1 3 3 3 0 V-type ATPase 116kDa subunit family DUF4140 PF13600.1 gi|307594762|ref|YP_003901079.1| - 5.7 7.4 54.6 0.82 10.1 0.5 8.9 2 2 6 8 8 8 0 N-terminal domain of unknown function (DUF4140) Prominin PF05478.6 gi|307594762|ref|YP_003901079.1| - 7.5 3.9 6.5 14 3.1 2.1 2.8 2 1 1 3 3 3 0 Prominin Phage_GP20 PF06810.6 gi|307594762|ref|YP_003901079.1| - 7.7 5.9 14.7 2.5 7.5 1.4 4.8 4 1 3 7 7 6 0 Phage minor structural protein GP20 DUF4200 PF13863.1 gi|307594762|ref|YP_003901079.1| - 8 6.4 43.3 4.9 7.1 4.8 6.2 4 3 3 7 7 7 0 Domain of unknown function (DUF4200) Cauli_AT PF03233.8 gi|307594762|ref|YP_003901079.1| - 8.1 6.1 10.2 49 3.5 0.0 4.2 4 1 0 4 4 4 0 Aphid transmission protein Occludin_ELL PF07303.8 gi|307594762|ref|YP_003901079.1| - 9.2 7.0 19.4 15 6.3 1.7 6.4 2 2 5 8 8 7 0 Occludin homology domain Succ_CoA_lig PF13607.1 gi|307594764|ref|YP_003901081.1| - 1.3e-45 154.3 4.5 2.6e-45 153.4 0.2 3.0 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|307594764|ref|YP_003901081.1| - 5e-24 84.6 1.7 2.6e-22 79.1 0.1 3.1 3 1 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|307594764|ref|YP_003901081.1| - 1.3e-13 51.2 0.0 5.2e-13 49.3 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain Peripla_BP_3 PF13377.1 gi|307594764|ref|YP_003901081.1| - 0.015 15.2 0.7 0.27 11.2 0.0 3.1 3 1 1 4 4 4 0 Periplasmic binding protein-like domain Na_H_Exchanger PF00999.16 gi|307594765|ref|YP_003901082.1| - 6.1e-52 176.4 54.9 7.5e-52 176.1 38.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF2324 PF10086.4 gi|307594767|ref|YP_003901084.1| - 1.3e-07 31.0 17.0 1.3e-06 27.8 11.8 2.2 1 1 0 1 1 1 1 Putative membrane peptidase family (DUF2324) PSI_PsaJ PF01701.13 gi|307594767|ref|YP_003901084.1| - 1.4 8.6 6.5 1 9.2 1.1 3.1 3 0 0 3 3 3 0 Photosystem I reaction centre subunit IX / PsaJ Voltage_CLC PF00654.15 gi|307594768|ref|YP_003901085.1| - 1.1e-68 231.9 34.1 2e-68 231.0 19.4 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel Methyltransf_11 PF08241.7 gi|307594769|ref|YP_003901086.1| - 1.3e-05 25.6 0.0 1.9e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307594769|ref|YP_003901086.1| - 0.00025 20.6 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|307594769|ref|YP_003901086.1| - 0.0019 17.9 0.2 0.007 16.0 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307594769|ref|YP_003901086.1| - 0.044 14.1 0.0 0.061 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|307594769|ref|YP_003901086.1| - 0.091 12.2 0.1 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|307594769|ref|YP_003901086.1| - 0.71 10.4 2.5 2.1 8.9 1.7 2.0 1 1 0 1 1 1 0 Methyltransferase domain MFS_1 PF07690.11 gi|307594770|ref|YP_003901087.1| - 1.4e-17 63.5 45.1 2.4e-10 39.6 6.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307594770|ref|YP_003901087.1| - 0.41 9.1 23.2 0.022 13.3 3.3 3.3 2 2 0 3 3 3 0 Sugar (and other) transporter zf-DHHC PF01529.15 gi|307594770|ref|YP_003901087.1| - 7.4 5.9 6.5 1.6e+02 1.6 4.5 2.6 1 1 0 1 1 1 0 DHHC palmitoyltransferase ABC_tran PF00005.22 gi|307594771|ref|YP_003901088.1| - 7.5e-23 81.3 0.0 1.2e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307594771|ref|YP_003901088.1| - 8.2e-14 52.2 0.2 2.3e-08 34.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|307594771|ref|YP_003901088.1| - 0.00014 21.1 0.0 0.24 10.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|307594771|ref|YP_003901088.1| - 0.0019 18.1 0.0 0.0074 16.1 0.0 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|307594771|ref|YP_003901088.1| - 0.008 16.3 0.4 0.046 13.9 0.1 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|307594771|ref|YP_003901088.1| - 0.0095 15.4 0.3 0.014 14.9 0.2 1.6 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|307594771|ref|YP_003901088.1| - 0.013 15.0 0.0 0.029 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|307594771|ref|YP_003901088.1| - 0.014 15.3 0.4 0.12 12.3 0.1 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_15 PF13175.1 gi|307594771|ref|YP_003901088.1| - 0.015 14.3 0.0 1 8.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|307594771|ref|YP_003901088.1| - 0.023 13.8 0.1 0.12 11.4 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin DUF258 PF03193.11 gi|307594771|ref|YP_003901088.1| - 0.027 13.6 0.0 0.06 12.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|307594771|ref|YP_003901088.1| - 0.029 14.7 0.1 0.047 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|307594771|ref|YP_003901088.1| - 0.14 11.6 0.0 0.38 10.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain SHS2_Rpb7-N PF03876.12 gi|307594773|ref|YP_003901090.1| - 1.3e-14 54.0 0.2 2.7e-14 53.0 0.1 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|307594773|ref|YP_003901090.1| - 3.1e-11 43.1 1.7 3.1e-11 43.1 1.2 2.1 2 1 1 3 3 3 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|307594773|ref|YP_003901090.1| - 0.066 13.4 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 SUI1 PF01253.17 gi|307594775|ref|YP_003901092.1| - 3.6e-18 65.1 0.8 6.3e-18 64.3 0.5 1.3 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|307594775|ref|YP_003901092.1| - 0.026 14.7 0.2 0.067 13.4 0.1 1.8 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) PNP_UDP_1 PF01048.15 gi|307594777|ref|YP_003901094.1| - 1.6e-35 122.1 0.0 1.8e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DEAD PF00270.24 gi|307594779|ref|YP_003901096.1| - 7.3e-31 106.9 0.0 2.3e-30 105.3 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|307594779|ref|YP_003901096.1| - 2.1e-30 105.8 0.0 5.6e-30 104.4 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.26 gi|307594779|ref|YP_003901096.1| - 5e-16 58.3 0.3 5.9e-14 51.6 0.1 3.0 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|307594779|ref|YP_003901096.1| - 4.9e-05 23.2 0.0 0.00025 20.9 0.0 2.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit HypA PF01155.14 gi|307594779|ref|YP_003901096.1| - 0.0014 18.2 0.1 0.0032 17.1 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family SecA_DEAD PF07517.9 gi|307594779|ref|YP_003901096.1| - 0.0015 17.8 0.0 0.0025 17.1 0.0 1.5 1 0 0 1 1 1 1 SecA DEAD-like domain AAA_25 PF13481.1 gi|307594779|ref|YP_003901096.1| - 0.0028 17.0 0.1 0.0099 15.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|307594779|ref|YP_003901096.1| - 0.0082 16.2 0.2 0.39 10.8 0.0 3.2 3 0 0 3 3 2 1 AAA domain zf-ribbon_3 PF13248.1 gi|307594779|ref|YP_003901096.1| - 0.039 13.1 0.2 0.073 12.3 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain SNF2_N PF00176.18 gi|307594779|ref|YP_003901096.1| - 0.077 11.7 0.0 0.18 10.5 0.0 1.5 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_10 PF12846.2 gi|307594779|ref|YP_003901096.1| - 0.16 11.3 0.2 16 4.8 0.0 2.5 2 0 0 2 2 2 0 AAA-like domain DNA_RNApol_7kD PF03604.8 gi|307594779|ref|YP_003901096.1| - 0.19 11.2 0.7 0.45 10.0 0.5 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit CbiA PF01656.18 gi|307594780|ref|YP_003901097.1| - 4.9e-05 22.8 3.0 0.00037 19.9 2.1 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|307594780|ref|YP_003901097.1| - 0.06 12.4 0.1 0.099 11.7 0.1 1.3 1 0 0 1 1 1 0 ATPase MipZ DUF2975 PF11188.3 gi|307594781|ref|YP_003901098.1| - 3.9 7.2 14.0 6.5 6.4 9.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) O-antigen_lig PF13425.1 gi|307594781|ref|YP_003901098.1| - 5.2 7.0 13.4 6.8 6.6 9.3 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein MARVEL PF01284.18 gi|307594781|ref|YP_003901098.1| - 5.4 6.8 12.5 2e+02 1.7 8.6 2.2 1 1 0 1 1 1 0 Membrane-associating domain CbiA PF01656.18 gi|307594782|ref|YP_003901099.1| - 8.1e-10 38.4 0.1 1.1e-09 38.0 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|307594782|ref|YP_003901099.1| - 2.2e-05 24.4 0.0 4e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|307594782|ref|YP_003901099.1| - 0.038 13.3 0.9 0.22 10.8 0.6 2.1 1 1 0 1 1 1 0 AAA domain MipZ PF09140.6 gi|307594782|ref|YP_003901099.1| - 0.038 13.0 0.1 0.19 10.8 0.0 1.9 1 1 0 1 1 1 0 ATPase MipZ PEPcase_2 PF14010.1 gi|307594782|ref|YP_003901099.1| - 0.044 12.0 0.1 0.056 11.7 0.1 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase YhjQ PF06564.7 gi|307594782|ref|YP_003901099.1| - 0.11 11.8 0.2 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 YhjQ protein DUF2205 PF10224.4 gi|307594783|ref|YP_003901100.1| - 0.002 17.6 1.9 0.0035 16.8 0.7 1.8 1 1 1 2 2 2 1 Predicted coiled-coil protein (DUF2205) Seryl_tRNA_N PF02403.17 gi|307594783|ref|YP_003901100.1| - 0.0037 17.2 0.4 0.0053 16.7 0.2 1.4 1 1 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|307594783|ref|YP_003901100.1| - 0.0041 17.3 2.4 0.01 16.0 1.7 1.7 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|307594783|ref|YP_003901100.1| - 0.0045 16.8 1.4 0.0063 16.3 1.0 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF342 PF03961.8 gi|307594783|ref|YP_003901100.1| - 0.0047 15.3 2.5 0.0049 15.3 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF342) ALIX_LYPXL_bnd PF13949.1 gi|307594783|ref|YP_003901100.1| - 0.0052 15.7 0.7 0.006 15.5 0.5 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV BLOC1_2 PF10046.4 gi|307594783|ref|YP_003901100.1| - 0.0069 16.4 3.0 0.016 15.3 2.1 1.6 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Effector_1 PF04518.7 gi|307594783|ref|YP_003901100.1| - 0.02 13.9 1.0 0.024 13.6 0.7 1.2 1 0 0 1 1 1 0 Effector from type III secretion system DUF935 PF06074.7 gi|307594783|ref|YP_003901100.1| - 0.022 13.4 0.1 0.025 13.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF935) RPW8 PF05659.6 gi|307594783|ref|YP_003901100.1| - 0.03 13.8 0.3 0.037 13.5 0.2 1.2 1 0 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Cortex-I_coil PF09304.5 gi|307594783|ref|YP_003901100.1| - 0.032 14.2 1.7 0.059 13.4 0.2 1.9 1 1 1 2 2 2 0 Cortexillin I, coiled coil MerR-DNA-bind PF09278.6 gi|307594783|ref|YP_003901100.1| - 0.04 14.3 0.4 4.4 7.7 0.0 2.4 2 0 0 2 2 2 0 MerR, DNA binding Laminin_I PF06008.9 gi|307594783|ref|YP_003901100.1| - 0.044 13.0 0.9 0.057 12.7 0.6 1.1 1 0 0 1 1 1 0 Laminin Domain I WXG100 PF06013.7 gi|307594783|ref|YP_003901100.1| - 0.055 13.4 0.0 0.25 11.3 0.0 2.0 1 1 0 1 1 1 0 Proteins of 100 residues with WXG Spc7 PF08317.6 gi|307594783|ref|YP_003901100.1| - 0.057 12.0 2.0 0.062 11.9 1.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein IncA PF04156.9 gi|307594783|ref|YP_003901100.1| - 0.062 12.8 1.6 0.067 12.7 1.1 1.1 1 0 0 1 1 1 0 IncA protein TSKS PF15358.1 gi|307594783|ref|YP_003901100.1| - 0.074 11.2 0.0 0.084 11.0 0.0 1.1 1 0 0 1 1 1 0 Testis-specific serine kinase substrate Prefoldin PF02996.12 gi|307594783|ref|YP_003901100.1| - 0.082 12.5 2.2 1.8 8.1 1.5 2.3 1 1 0 1 1 1 0 Prefoldin subunit Poty_PP PF08440.5 gi|307594783|ref|YP_003901100.1| - 0.083 11.9 0.3 0.098 11.7 0.2 1.1 1 0 0 1 1 1 0 Potyviridae polyprotein COG2 PF06148.6 gi|307594783|ref|YP_003901100.1| - 0.084 12.7 0.1 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 FliJ PF02050.11 gi|307594783|ref|YP_003901100.1| - 0.087 12.8 0.2 0.18 11.8 0.1 1.6 1 1 0 1 1 1 0 Flagellar FliJ protein Med4 PF10018.4 gi|307594783|ref|YP_003901100.1| - 0.12 11.7 2.7 0.17 11.2 1.9 1.2 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Fib_alpha PF08702.5 gi|307594783|ref|YP_003901100.1| - 0.13 12.3 2.1 0.51 10.4 0.5 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DASH_Dad1 PF08649.5 gi|307594783|ref|YP_003901100.1| - 0.14 11.9 1.9 7.1 6.4 0.0 2.3 1 1 1 2 2 2 0 DASH complex subunit Dad1 FlaC_arch PF05377.6 gi|307594783|ref|YP_003901100.1| - 0.15 12.0 4.9 2 8.3 0.1 2.8 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Matrilin_ccoil PF10393.4 gi|307594783|ref|YP_003901100.1| - 0.15 11.4 1.5 11 5.5 0.3 2.8 2 1 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Prefoldin_2 PF01920.15 gi|307594783|ref|YP_003901100.1| - 0.19 11.5 3.6 4.4 7.1 0.4 2.3 1 1 1 2 2 2 0 Prefoldin subunit Spectrin PF00435.16 gi|307594783|ref|YP_003901100.1| - 0.19 12.0 1.2 2.8 8.2 0.1 2.5 1 1 1 2 2 2 0 Spectrin repeat Phasin PF05597.6 gi|307594783|ref|YP_003901100.1| - 0.27 10.9 1.5 3.9 7.2 1.1 2.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Merozoite_SPAM PF07133.6 gi|307594783|ref|YP_003901100.1| - 0.4 10.5 5.7 0.57 10.0 4.0 1.2 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) Snapin_Pallidin PF14712.1 gi|307594783|ref|YP_003901100.1| - 0.41 10.9 2.9 1.3 9.3 2.0 1.8 1 1 0 1 1 1 0 Snapin/Pallidin SlyX PF04102.7 gi|307594783|ref|YP_003901100.1| - 0.45 10.9 3.6 2 8.8 0.3 2.3 1 1 1 2 2 2 0 SlyX T2SE PF00437.15 gi|307594784|ref|YP_003901101.1| - 3.5e-22 78.5 0.0 5.6e-22 77.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activ_2 PF14532.1 gi|307594784|ref|YP_003901101.1| - 0.0018 18.3 0.0 0.0029 17.6 0.0 1.2 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|307594784|ref|YP_003901101.1| - 0.0033 18.2 0.1 0.0074 17.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|307594784|ref|YP_003901101.1| - 0.0061 16.0 0.2 0.013 15.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|307594784|ref|YP_003901101.1| - 0.007 16.0 0.0 0.018 14.7 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|307594784|ref|YP_003901101.1| - 0.011 15.6 0.0 0.028 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|307594784|ref|YP_003901101.1| - 0.012 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|307594784|ref|YP_003901101.1| - 0.013 14.7 0.0 0.022 13.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|307594784|ref|YP_003901101.1| - 0.087 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|307594784|ref|YP_003901101.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.7 gi|307594784|ref|YP_003901101.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region ATP_bind_1 PF03029.12 gi|307594784|ref|YP_003901101.1| - 0.12 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|307594784|ref|YP_003901101.1| - 0.13 12.0 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) CobU PF02283.11 gi|307594784|ref|YP_003901101.1| - 0.14 11.5 0.0 3 7.2 0.0 2.1 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_18 PF13238.1 gi|307594784|ref|YP_003901101.1| - 0.16 12.3 0.0 0.27 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|307594784|ref|YP_003901101.1| - 0.18 11.4 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain CbiA PF01656.18 gi|307594786|ref|YP_003901103.1| - 5.6e-16 58.5 0.0 6.8e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|307594786|ref|YP_003901103.1| - 1.7e-07 31.3 0.0 2.6e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|307594786|ref|YP_003901103.1| - 7.6e-07 28.4 0.1 1.1e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|307594786|ref|YP_003901103.1| - 0.00097 18.2 0.0 0.0057 15.7 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ YhjQ PF06564.7 gi|307594786|ref|YP_003901103.1| - 0.0067 15.8 0.0 0.0085 15.4 0.0 1.4 1 1 0 1 1 1 1 YhjQ protein VirC1 PF07015.6 gi|307594786|ref|YP_003901103.1| - 0.015 14.3 0.1 0.024 13.6 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein Sigma_reg_N PF13800.1 gi|307594788|ref|YP_003901105.1| - 0.028 14.4 1.6 0.073 13.1 1.1 1.7 1 1 0 1 1 1 0 Sigma factor regulator N-terminal DUF1628 PF07790.6 gi|307594788|ref|YP_003901105.1| - 1.3 9.8 6.4 0.77 10.5 3.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) VMA21 PF09446.5 gi|307594788|ref|YP_003901105.1| - 2.2 8.2 7.9 0.31 10.9 0.4 2.6 3 0 0 3 3 3 0 VMA21-like domain Pterin_4a PF01329.14 gi|307594789|ref|YP_003901106.1| - 1.7e-25 88.5 0.0 1.9e-25 88.4 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Asp_protease_2 PF13650.1 gi|307594792|ref|YP_003901109.1| - 1.2e-09 38.4 0.3 2e-09 37.8 0.2 1.3 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|307594792|ref|YP_003901109.1| - 0.00077 19.3 0.1 0.0016 18.3 0.0 1.6 1 1 0 1 1 1 1 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|307594792|ref|YP_003901109.1| - 0.0013 18.4 0.1 0.004 16.9 0.0 1.9 2 0 0 2 2 2 1 gag-polyprotein putative aspartyl protease Peptidase_A2B PF12384.3 gi|307594792|ref|YP_003901109.1| - 0.12 11.7 0.5 0.46 9.7 0.3 1.8 1 1 0 1 1 1 0 Ty3 transposon peptidase Bac_Ubq_Cox PF01654.12 gi|307594794|ref|YP_003901111.1| - 1.6e-09 36.6 14.7 1.6e-09 36.6 10.2 2.7 1 1 1 2 2 2 2 Bacterial Cytochrome Ubiquinol Oxidase Bac_Ubq_Cox PF01654.12 gi|307594795|ref|YP_003901112.1| - 1.4e-63 214.8 35.8 1.7e-62 211.2 24.8 2.2 1 1 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase EVE PF01878.13 gi|307594796|ref|YP_003901113.1| - 0.0026 17.7 0.0 0.0045 17.0 0.0 1.6 1 0 0 1 1 1 1 EVE domain MFS_1 PF07690.11 gi|307594797|ref|YP_003901114.1| - 1e-23 83.6 54.3 1e-23 83.6 37.7 2.5 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307594797|ref|YP_003901114.1| - 4.5e-19 68.3 40.3 2.3e-16 59.4 8.1 3.2 1 1 2 3 3 3 3 Sugar (and other) transporter PLDc_2 PF13091.1 gi|307594798|ref|YP_003901115.1| - 3.4e-14 52.6 0.0 5.5e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 PLD-like domain EVE PF01878.13 gi|307594799|ref|YP_003901116.1| - 0.0052 16.8 0.0 0.015 15.2 0.0 1.8 1 1 0 1 1 1 1 EVE domain HEPN PF05168.9 gi|307594800|ref|YP_003901117.1| - 5.2e-11 42.4 0.0 6.3e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 HEPN domain DUF2267 PF10025.4 gi|307594800|ref|YP_003901117.1| - 0.0014 18.6 0.1 0.12 12.4 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2267) DUF1771 PF08590.5 gi|307594800|ref|YP_003901117.1| - 0.024 14.6 0.4 1 9.4 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) TPR_8 PF13181.1 gi|307594800|ref|YP_003901117.1| - 0.029 14.1 0.1 5.2 7.0 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|307594800|ref|YP_003901117.1| - 0.075 12.9 0.1 0.075 12.9 0.1 2.7 4 0 0 4 4 4 0 Tetratricopeptide repeat Herpes_UL25 PF01499.11 gi|307594800|ref|YP_003901117.1| - 0.12 10.7 0.0 0.13 10.5 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family TPR_11 PF13414.1 gi|307594800|ref|YP_003901117.1| - 0.14 11.7 0.6 3.8 7.2 0.1 2.3 2 0 0 2 2 2 0 TPR repeat NTP_transf_2 PF01909.18 gi|307594801|ref|YP_003901118.1| - 5.9e-08 32.9 0.2 6.8e-08 32.7 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain PAS_3 PF08447.6 gi|307594801|ref|YP_003901118.1| - 0.015 15.3 0.2 0.028 14.5 0.1 1.5 1 0 0 1 1 1 0 PAS fold DUF294 PF03445.8 gi|307594801|ref|YP_003901118.1| - 0.064 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Fe-S_assembly PF04384.8 gi|307594802|ref|YP_003901119.1| - 0.15 12.4 0.0 0.19 12.1 0.0 1.2 1 0 0 1 1 1 0 Iron-sulphur cluster assembly Baculo_11_kDa PF06143.6 gi|307594802|ref|YP_003901119.1| - 8.1 5.8 8.2 44 3.5 4.5 2.0 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF3378 PF11858.3 gi|307594803|ref|YP_003901120.1| - 0.1 12.6 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3378) VKOR PF07884.9 gi|307594804|ref|YP_003901121.1| - 0.056 13.2 0.7 0.056 13.2 0.5 2.2 2 0 0 2 2 2 0 Vitamin K epoxide reductase family Pribosyltran PF00156.22 gi|307594805|ref|YP_003901122.1| - 3.6e-18 65.4 0.2 4.5e-18 65.1 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|307594805|ref|YP_003901122.1| - 0.013 14.8 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Exo_endo_phos PF03372.18 gi|307594805|ref|YP_003901122.1| - 0.016 15.1 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family DUF1297 PF06973.7 gi|307594806|ref|YP_003901123.1| - 3.1e-70 235.3 0.0 3.9e-70 234.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|307594806|ref|YP_003901123.1| - 3.2e-39 133.5 0.0 4.8e-39 132.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|307594806|ref|YP_003901123.1| - 0.00088 19.0 0.0 0.0044 16.7 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|307594806|ref|YP_003901123.1| - 0.031 13.5 0.0 0.049 12.9 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF1297 PF06973.7 gi|307594807|ref|YP_003901124.1| - 9e-73 243.6 0.0 1.2e-72 243.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|307594807|ref|YP_003901124.1| - 4.7e-43 145.8 0.0 8.9e-43 144.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|307594807|ref|YP_003901124.1| - 2.3e-06 27.4 0.0 0.00017 21.4 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp domain PEPcase_2 PF14010.1 gi|307594808|ref|YP_003901125.1| - 4.6e-178 592.5 0.0 5.2e-178 592.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PDT PF00800.13 gi|307594809|ref|YP_003901126.1| - 7.7e-46 155.9 0.0 1e-45 155.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|307594809|ref|YP_003901126.1| - 1.1e-08 34.3 0.0 7.5e-07 28.4 0.0 2.4 2 0 0 2 2 2 2 ACT domain Glu_synthase PF01645.12 gi|307594810|ref|YP_003901127.1| - 1.1e-96 324.0 3.6 4.4e-93 312.1 0.8 2.4 2 1 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|307594810|ref|YP_003901127.1| - 3.3e-10 39.7 0.1 1.8e-05 24.1 0.0 3.2 3 0 0 3 3 3 2 Glutamate synthase central domain FMN_dh PF01070.13 gi|307594810|ref|YP_003901127.1| - 4.7e-10 38.8 6.8 1.5e-06 27.3 1.5 3.0 3 0 0 3 3 3 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|307594810|ref|YP_003901127.1| - 0.00037 19.7 8.8 0.015 14.5 3.6 3.1 2 1 1 3 3 3 1 Nitronate monooxygenase IMPDH PF00478.20 gi|307594810|ref|YP_003901127.1| - 0.0005 19.0 6.9 0.023 13.6 2.5 2.5 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|307594810|ref|YP_003901127.1| - 0.0014 17.6 0.5 0.0014 17.6 0.4 2.2 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|307594810|ref|YP_003901127.1| - 0.0041 16.1 0.0 0.012 14.5 0.0 1.8 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|307594810|ref|YP_003901127.1| - 0.014 14.6 2.4 1.2 8.3 0.0 3.2 2 1 1 3 3 3 0 PcrB family GXGXG PF01493.14 gi|307594811|ref|YP_003901128.1| - 1.3e-27 96.1 12.7 2.1e-26 92.1 8.8 2.4 1 1 0 1 1 1 1 GXGXG motif GATase_2 PF00310.16 gi|307594811|ref|YP_003901128.1| - 2.8e-15 55.8 0.2 1.9e-14 53.2 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|307594811|ref|YP_003901128.1| - 5e-15 55.6 0.0 1.5e-14 54.1 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|307594811|ref|YP_003901128.1| - 5.8e-08 32.5 0.0 2.7e-07 30.3 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase domain SPARC_Ca_bdg PF10591.4 gi|307594811|ref|YP_003901128.1| - 0.13 12.2 0.1 0.24 11.4 0.1 1.3 1 0 0 1 1 1 0 Secreted protein acidic and rich in cysteine Ca binding region Iso_dh PF00180.15 gi|307594812|ref|YP_003901129.1| - 1.3e-103 346.6 0.4 1.4e-103 346.4 0.3 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|307594812|ref|YP_003901129.1| - 0.0073 15.5 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA dTMP_synthase PF02593.9 gi|307594812|ref|YP_003901129.1| - 0.019 14.2 0.1 0.088 12.1 0.0 2.0 1 1 2 3 3 3 0 Thymidylate synthase Cupin_2 PF07883.6 gi|307594813|ref|YP_003901130.1| - 6.1e-16 57.6 0.2 7.9e-16 57.3 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|307594813|ref|YP_003901130.1| - 5.3e-10 39.1 0.0 6.5e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain ARD PF03079.9 gi|307594813|ref|YP_003901130.1| - 1.3e-06 28.4 0.1 1.5e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 ARD/ARD' family Cupin_1 PF00190.17 gi|307594813|ref|YP_003901130.1| - 2.4e-06 27.0 0.1 3.4e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|307594813|ref|YP_003901130.1| - 0.0011 18.5 0.2 0.0013 18.3 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|307594813|ref|YP_003901130.1| - 0.0012 18.8 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_4 PF08007.7 gi|307594813|ref|YP_003901130.1| - 0.0021 17.3 0.0 0.0023 17.2 0.0 1.2 1 0 0 1 1 1 1 Cupin superfamily protein DUF1971 PF09313.6 gi|307594813|ref|YP_003901130.1| - 0.0029 17.2 0.1 0.0043 16.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1971) EutQ PF06249.7 gi|307594813|ref|YP_003901130.1| - 0.0033 16.9 0.0 0.0036 16.8 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ FdtA PF05523.6 gi|307594813|ref|YP_003901130.1| - 0.0085 15.6 0.0 0.0095 15.4 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_8 PF13621.1 gi|307594813|ref|YP_003901130.1| - 0.013 14.9 0.3 1.1 8.6 0.0 2.0 1 1 1 2 2 2 0 Cupin-like domain JmjC PF02373.17 gi|307594813|ref|YP_003901130.1| - 0.025 14.7 0.0 0.031 14.5 0.0 1.2 1 0 0 1 1 1 0 JmjC domain, hydroxylase KduI PF04962.7 gi|307594813|ref|YP_003901130.1| - 0.036 13.1 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 KduI/IolB family Cupin_3 PF05899.7 gi|307594813|ref|YP_003901130.1| - 0.039 13.3 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|307594813|ref|YP_003901130.1| - 0.082 12.4 0.0 0.086 12.4 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain HMGL-like PF00682.14 gi|307594814|ref|YP_003901131.1| - 4.3e-80 268.7 2.2 5.7e-80 268.3 1.5 1.2 1 0 0 1 1 1 1 HMGL-like TPP_enzyme_N PF02776.13 gi|307594815|ref|YP_003901132.1| - 1e-56 191.1 0.1 4.8e-55 185.6 0.1 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|307594815|ref|YP_003901132.1| - 2.1e-42 144.3 0.4 2.5e-41 140.7 0.0 2.8 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|307594815|ref|YP_003901132.1| - 9.8e-42 141.9 0.0 5.5e-41 139.5 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF552 PF04472.7 gi|307594815|ref|YP_003901132.1| - 0.04 13.8 0.1 0.12 12.2 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF552) ACT_5 PF13710.1 gi|307594816|ref|YP_003901133.1| - 1e-13 50.8 0.7 1.3e-13 50.4 0.5 1.2 1 0 0 1 1 1 1 ACT domain IlvN PF07991.7 gi|307594817|ref|YP_003901134.1| - 2.5e-65 218.8 0.0 4.6e-65 218.0 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|307594817|ref|YP_003901134.1| - 6.6e-45 152.5 0.1 8.3e-45 152.2 0.1 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|307594817|ref|YP_003901134.1| - 9e-06 25.6 0.1 1.9e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|307594817|ref|YP_003901134.1| - 2.4e-05 23.5 0.1 8.4e-05 21.7 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|307594817|ref|YP_003901134.1| - 0.00066 20.0 0.0 0.0019 18.5 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|307594817|ref|YP_003901134.1| - 0.00083 19.2 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|307594817|ref|YP_003901134.1| - 0.0063 15.9 0.0 0.014 14.8 0.0 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NusB PF01029.13 gi|307594817|ref|YP_003901134.1| - 0.11 12.4 0.1 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 NusB family FlpD PF02662.11 gi|307594818|ref|YP_003901135.1| - 4.4e-37 126.5 0.0 2.4e-36 124.1 0.0 2.4 2 0 0 2 2 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|307594818|ref|YP_003901135.1| - 2.5e-28 96.4 58.7 2e-08 33.4 2.7 7.4 7 0 0 7 7 7 5 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|307594818|ref|YP_003901135.1| - 7.9e-25 87.9 5.4 3e-08 33.7 0.0 4.1 3 1 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.2 gi|307594818|ref|YP_003901135.1| - 2.9e-24 85.1 42.4 5.6e-10 39.4 8.2 5.5 4 2 1 5 5 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307594818|ref|YP_003901135.1| - 2.3e-18 65.2 56.2 2.8e-06 26.9 1.9 7.3 7 0 0 7 7 6 5 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307594818|ref|YP_003901135.1| - 4.2e-18 64.8 44.7 3.7e-08 33.0 7.5 4.8 4 2 1 5 5 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307594818|ref|YP_003901135.1| - 7.5e-16 57.7 37.4 2.2e-07 30.6 3.7 5.6 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307594818|ref|YP_003901135.1| - 8.5e-15 54.7 50.0 1.8e-07 31.2 7.4 5.4 4 1 2 6 6 6 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307594818|ref|YP_003901135.1| - 9.4e-14 50.4 58.7 0.00024 20.8 2.5 7.4 7 0 0 7 7 6 6 4Fe-4S binding domain Pyr_redox_3 PF13738.1 gi|307594818|ref|YP_003901135.1| - 1.1e-13 51.6 3.2 0.0025 17.9 0.0 4.1 3 1 1 4 4 4 3 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.1 gi|307594818|ref|YP_003901135.1| - 4e-13 49.8 35.3 0.00011 22.9 0.2 6.7 6 1 0 6 6 6 3 4Fe-4S double cluster binding domain Pyr_redox PF00070.22 gi|307594818|ref|YP_003901135.1| - 5e-12 46.0 7.9 3.8e-07 30.4 0.2 5.4 5 1 0 5 5 4 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|307594818|ref|YP_003901135.1| - 8.1e-12 44.9 2.7 1.7e-06 27.9 0.1 3.0 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Fer4_17 PF13534.1 gi|307594818|ref|YP_003901135.1| - 1.1e-10 41.6 42.2 0.0019 18.4 1.1 6.8 6 1 1 7 7 6 4 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307594818|ref|YP_003901135.1| - 1.4e-10 41.4 38.9 0.012 16.0 0.8 7.2 7 0 0 7 7 6 4 4Fe-4S dicluster domain HI0933_like PF03486.9 gi|307594818|ref|YP_003901135.1| - 4.6e-10 38.5 10.7 0.0004 18.9 1.8 3.2 3 0 0 3 3 3 3 HI0933-like protein GIDA PF01134.17 gi|307594818|ref|YP_003901135.1| - 1.9e-09 36.9 15.2 4.5e-07 29.0 0.1 5.1 4 1 0 5 5 5 1 Glucose inhibited division protein A DAO PF01266.19 gi|307594818|ref|YP_003901135.1| - 3.6e-09 35.9 14.3 5.8e-06 25.4 1.3 5.1 5 0 0 5 5 5 2 FAD dependent oxidoreductase Fer4_8 PF13183.1 gi|307594818|ref|YP_003901135.1| - 1.4e-08 34.6 44.7 0.0011 18.9 3.9 5.7 4 3 5 9 9 8 6 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|307594818|ref|YP_003901135.1| - 4.1e-07 29.1 12.0 8.6e-06 24.8 2.3 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|307594818|ref|YP_003901135.1| - 1.7e-06 27.3 7.4 0.0073 15.4 0.7 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|307594818|ref|YP_003901135.1| - 4.8e-06 25.9 4.7 4.8e-06 25.9 3.3 2.8 2 1 1 3 3 3 1 FAD dependent oxidoreductase Fer4_4 PF12800.2 gi|307594818|ref|YP_003901135.1| - 8.8e-06 25.6 61.1 0.083 13.2 1.9 7.5 7 0 0 7 7 6 5 4Fe-4S binding domain NAD_binding_7 PF13241.1 gi|307594818|ref|YP_003901135.1| - 8.5e-05 22.7 1.1 0.6 10.3 0.0 3.7 4 0 0 4 4 3 2 Putative NAD(P)-binding Thi4 PF01946.12 gi|307594818|ref|YP_003901135.1| - 0.00022 20.4 10.2 0.016 14.2 0.1 3.8 4 1 1 5 5 4 1 Thi4 family Fer4_15 PF13459.1 gi|307594818|ref|YP_003901135.1| - 0.00036 21.0 33.4 0.037 14.5 0.2 6.3 5 1 0 5 5 5 2 4Fe-4S single cluster domain AlaDh_PNT_C PF01262.16 gi|307594818|ref|YP_003901135.1| - 0.00045 19.8 2.2 0.0067 15.9 0.1 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|307594818|ref|YP_003901135.1| - 0.00073 19.3 4.7 2.2 8.0 0.0 3.6 3 0 0 3 3 3 1 FAD-NAD(P)-binding CPSase_L_chain PF00289.17 gi|307594818|ref|YP_003901135.1| - 0.0011 19.0 1.7 1.3 9.1 0.0 3.0 3 0 0 3 3 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain Fer4_3 PF12798.2 gi|307594818|ref|YP_003901135.1| - 0.0046 17.4 73.7 0.094 13.3 4.1 8.2 7 0 0 7 7 7 3 4Fe-4S binding domain Fer4_11 PF13247.1 gi|307594818|ref|YP_003901135.1| - 0.0056 16.5 4.1 0.0056 16.5 2.8 5.3 6 1 0 6 6 5 1 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|307594818|ref|YP_003901135.1| - 0.0066 15.4 7.8 0.15 10.9 0.4 3.2 2 1 1 3 3 3 1 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|307594818|ref|YP_003901135.1| - 0.011 14.8 6.6 0.11 11.5 0.0 3.9 5 0 0 5 5 3 0 Flavin containing amine oxidoreductase Shikimate_DH PF01488.15 gi|307594818|ref|YP_003901135.1| - 0.034 14.2 9.4 1.2 9.1 0.4 3.9 4 0 0 4 4 3 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|307594818|ref|YP_003901135.1| - 0.052 13.3 6.8 1.7 8.4 0.4 2.7 2 0 0 2 2 2 0 ThiF family K_oxygenase PF13434.1 gi|307594818|ref|YP_003901135.1| - 0.074 11.9 0.1 0.87 8.4 0.0 2.5 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.14 gi|307594818|ref|YP_003901135.1| - 0.17 10.9 1.2 0.24 10.5 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|307594818|ref|YP_003901135.1| - 0.21 11.2 5.8 0.13 11.9 0.4 2.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_13 PF13370.1 gi|307594818|ref|YP_003901135.1| - 1.2 9.6 40.4 0.91 9.9 0.5 6.3 6 0 0 6 6 6 0 4Fe-4S single cluster domain Trp_halogenase PF04820.9 gi|307594818|ref|YP_003901135.1| - 5.3 5.5 8.4 0.16 10.5 1.2 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Fer4_8 PF13183.1 gi|307594819|ref|YP_003901136.1| - 3.8e-12 46.0 6.0 5.6e-12 45.4 4.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307594819|ref|YP_003901136.1| - 8.8e-11 41.9 18.3 7e-08 32.6 6.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307594819|ref|YP_003901136.1| - 3.5e-10 39.9 3.0 9.2e-05 22.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307594819|ref|YP_003901136.1| - 6.2e-09 35.5 7.9 1.2e-08 34.5 5.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307594819|ref|YP_003901136.1| - 8.4e-09 35.6 32.8 1.8e-06 28.1 7.6 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307594819|ref|YP_003901136.1| - 1.8e-08 34.6 5.1 0.00087 19.6 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307594819|ref|YP_003901136.1| - 4.4e-08 32.5 9.5 0.00096 18.9 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|307594819|ref|YP_003901136.1| - 4.4e-08 32.6 9.9 0.0001 22.0 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|307594819|ref|YP_003901136.1| - 7.3e-08 31.7 12.8 0.00022 20.6 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|307594819|ref|YP_003901136.1| - 3.5e-05 23.7 11.6 0.0082 16.4 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|307594819|ref|YP_003901136.1| - 7.1e-05 23.4 11.5 0.0011 19.6 8.2 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|307594819|ref|YP_003901136.1| - 0.00013 22.2 16.9 0.0067 16.9 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307594819|ref|YP_003901136.1| - 0.00024 20.8 13.1 0.0042 16.9 9.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307594819|ref|YP_003901136.1| - 0.001 19.5 4.7 0.018 15.6 0.2 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|307594819|ref|YP_003901136.1| - 0.027 14.1 0.8 0.027 14.1 0.6 2.1 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|307594819|ref|YP_003901136.1| - 0.18 12.1 12.1 0.49 10.8 1.1 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|307594820|ref|YP_003901137.1| - 2.1e-29 102.6 0.1 2.5e-29 102.3 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|307594821|ref|YP_003901138.1| - 3.3e-15 54.9 13.8 2.2e-08 33.3 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307594821|ref|YP_003901138.1| - 1.4e-11 44.0 7.0 2.1e-11 43.5 4.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307594821|ref|YP_003901138.1| - 2.4e-11 43.2 22.0 4.4e-08 32.7 8.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307594821|ref|YP_003901138.1| - 6.5e-11 42.4 32.7 5.9e-07 29.7 8.2 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307594821|ref|YP_003901138.1| - 1.4e-10 40.4 12.8 2e-05 24.2 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|307594821|ref|YP_003901138.1| - 5e-10 38.7 14.0 7.3e-05 22.4 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|307594821|ref|YP_003901138.1| - 5.9e-08 33.3 8.1 0.00041 21.0 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|307594821|ref|YP_003901138.1| - 3.2e-07 30.4 9.6 6.8e-07 29.4 6.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|307594821|ref|YP_003901138.1| - 4e-07 29.9 6.5 6e-07 29.3 4.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307594821|ref|YP_003901138.1| - 1.6e-06 28.5 9.0 0.009 16.5 0.2 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|307594821|ref|YP_003901138.1| - 9.2e-05 22.7 10.8 0.024 14.9 0.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307594821|ref|YP_003901138.1| - 0.00018 21.6 11.0 0.005 17.0 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|307594821|ref|YP_003901138.1| - 0.00052 20.3 5.8 0.21 12.0 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307594821|ref|YP_003901138.1| - 0.00065 20.0 11.7 0.012 16.0 0.5 2.5 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|307594821|ref|YP_003901138.1| - 3.2 8.5 18.4 0.3 11.7 4.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|307594822|ref|YP_003901139.1| - 4.9e-71 238.8 2.3 6.4e-71 238.5 1.6 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|307594822|ref|YP_003901139.1| - 0.0041 17.0 0.0 0.02 14.8 0.0 2.0 1 1 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|307594823|ref|YP_003901140.1| - 3.2e-24 85.2 0.2 4.8e-24 84.6 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Aconitase PF00330.15 gi|307594824|ref|YP_003901141.1| - 5.8e-58 196.4 0.1 8e-38 130.0 0.0 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|307594824|ref|YP_003901141.1| - 0.0014 17.2 0.0 0.0023 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|307594826|ref|YP_003901143.1| - 4.7e-19 68.7 0.1 6.9e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|307594826|ref|YP_003901143.1| - 0.049 13.0 0.4 0.49 9.7 0.3 2.2 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus HMGL-like PF00682.14 gi|307594827|ref|YP_003901144.1| - 2.3e-48 164.9 0.0 3.6e-48 164.3 0.0 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|307594827|ref|YP_003901144.1| - 1.7e-23 82.8 0.1 5.3e-23 81.2 0.0 1.8 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain PEP_mutase PF13714.1 gi|307594827|ref|YP_003901144.1| - 0.024 13.8 0.1 0.04 13.1 0.1 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase LAGLIDADG_WhiA PF14527.1 gi|307594828|ref|YP_003901145.1| - 0.0002 21.1 0.7 0.035 13.9 0.1 2.7 2 1 1 3 3 3 2 WhiA LAGLIDADG-like domain DUF4250 PF14056.1 gi|307594828|ref|YP_003901145.1| - 0.027 14.2 0.1 0.26 11.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) GrpB PF04229.9 gi|307594828|ref|YP_003901145.1| - 0.037 13.7 0.1 0.54 9.9 0.0 2.1 2 0 0 2 2 2 0 GrpB protein HGTP_anticodon PF03129.15 gi|307594828|ref|YP_003901145.1| - 0.044 13.7 0.7 0.82 9.6 0.1 2.5 2 0 0 2 2 2 0 Anticodon binding domain PSII_Pbs27 PF13326.1 gi|307594829|ref|YP_003901146.1| - 0.0067 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Photosystem II Pbs27 DUF2294 PF10057.4 gi|307594829|ref|YP_003901146.1| - 0.1 12.2 2.2 8.3 6.0 1.5 2.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) Ribosomal_S10 PF00338.17 gi|307594830|ref|YP_003901147.1| - 3.8e-29 100.3 0.0 4.2e-29 100.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|307594831|ref|YP_003901148.1| - 6.5e-57 192.0 0.0 1.1e-56 191.2 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|307594831|ref|YP_003901148.1| - 5.2e-29 100.3 0.1 4.6e-28 97.3 0.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|307594831|ref|YP_003901148.1| - 2.8e-19 68.9 8.3 6.3e-19 67.8 3.3 3.0 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|307594831|ref|YP_003901148.1| - 4.3e-10 39.0 2.6 1.4e-09 37.4 1.8 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|307594831|ref|YP_003901148.1| - 1.7e-05 24.7 0.0 5.5e-05 23.1 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|307594831|ref|YP_003901148.1| - 0.00014 21.1 0.2 0.0089 15.3 0.0 3.1 2 1 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|307594831|ref|YP_003901148.1| - 0.0072 16.8 0.1 0.051 14.0 0.0 2.2 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|307594831|ref|YP_003901148.1| - 0.03 14.1 0.2 1.5 8.5 0.0 2.4 1 1 0 2 2 2 0 Dynamin family Septin PF00735.13 gi|307594831|ref|YP_003901148.1| - 0.075 12.0 0.0 0.19 10.6 0.0 1.7 1 1 0 1 1 1 0 Septin COXG PF06240.8 gi|307594832|ref|YP_003901149.1| - 1.4e-35 121.9 0.0 1.6e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.4 gi|307594832|ref|YP_003901149.1| - 4.2e-10 39.9 0.0 4.9e-10 39.7 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|307594832|ref|YP_003901149.1| - 0.00019 21.4 0.0 0.00026 20.9 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Sugar_tr PF00083.19 gi|307594833|ref|YP_003901150.1| - 1.3e-10 40.4 12.5 1.3e-10 40.4 8.7 2.6 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|307594833|ref|YP_003901150.1| - 2.2e-10 39.8 44.1 2.2e-10 39.8 30.6 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF4229 PF14012.1 gi|307594834|ref|YP_003901151.1| - 0.96 9.3 10.9 2 8.3 7.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) YiaAB PF05360.9 gi|307594834|ref|YP_003901151.1| - 2 8.0 10.2 0.83 9.2 1.2 2.4 2 0 0 2 2 2 0 yiaA/B two helix domain MoCF_biosynth PF00994.19 gi|307594835|ref|YP_003901152.1| - 1.3e-31 108.8 0.2 1.6e-31 108.6 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain XdhC_C PF13478.1 gi|307594836|ref|YP_003901153.1| - 1.8e-23 83.3 0.0 2.5e-23 82.9 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain Fer2_2 PF01799.15 gi|307594837|ref|YP_003901154.1| - 7e-34 115.5 1.1 1.2e-33 114.8 0.0 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|307594837|ref|YP_003901154.1| - 1.8e-06 27.5 0.9 3.5e-06 26.6 0.3 1.7 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|307594837|ref|YP_003901154.1| - 0.0003 20.5 0.1 0.00049 19.9 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.16 gi|307594838|ref|YP_003901155.1| - 5.3e-53 178.9 0.0 7.1e-53 178.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|307594838|ref|YP_003901155.1| - 8.6e-30 102.7 0.4 1.5e-29 101.9 0.3 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|307594839|ref|YP_003901156.1| - 6.8e-140 466.9 0.0 8.4e-140 466.6 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|307594839|ref|YP_003901156.1| - 4.5e-30 103.9 0.0 1.1e-29 102.7 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SpoIIIAH PF12685.2 gi|307594839|ref|YP_003901156.1| - 0.022 14.2 0.3 0.036 13.5 0.2 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein tRNA-synt_1 PF00133.17 gi|307594840|ref|YP_003901157.1| - 8.5e-66 222.2 0.0 1.5e-49 168.5 0.0 2.6 2 2 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|307594840|ref|YP_003901157.1| - 2.6e-19 69.1 0.5 4.5e-11 42.0 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|307594840|ref|YP_003901157.1| - 3.1e-19 69.2 0.3 5.8e-19 68.3 0.2 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|307594840|ref|YP_003901157.1| - 7.4e-11 41.6 0.1 6.3e-10 38.6 0.0 2.5 2 1 1 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|307594840|ref|YP_003901157.1| - 4e-08 32.7 0.0 0.00039 19.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|307594840|ref|YP_003901157.1| - 0.011 14.4 0.0 2 7.0 0.0 2.6 2 1 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|307594840|ref|YP_003901157.1| - 0.19 10.5 0.0 0.33 9.7 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) CBS PF00571.23 gi|307594841|ref|YP_003901158.1| - 4e-29 100.1 4.3 5.8e-15 54.8 0.2 2.1 2 0 0 2 2 2 2 CBS domain EAP30 PF04157.11 gi|307594841|ref|YP_003901158.1| - 0.12 11.5 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family DUF1150 PF06620.6 gi|307594841|ref|YP_003901158.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1150) Spo0M PF07070.6 gi|307594842|ref|YP_003901159.1| - 0.13 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 SpoOM protein DUF4349 PF14257.1 gi|307594842|ref|YP_003901159.1| - 1.4 8.1 5.0 2.5 7.2 3.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) PDDEXK_1 PF12705.2 gi|307594843|ref|YP_003901160.1| - 9.8e-05 21.8 0.0 0.00017 21.0 0.0 1.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exo5 PF09810.4 gi|307594843|ref|YP_003901160.1| - 0.12 11.6 0.0 1.3 8.1 0.0 2.0 2 0 0 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease PK PF00224.16 gi|307594844|ref|YP_003901161.1| - 9.8e-85 284.2 0.1 1.3e-84 283.7 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|307594844|ref|YP_003901161.1| - 6.3e-19 67.6 0.0 5.3e-18 64.6 0.0 2.2 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|307594844|ref|YP_003901161.1| - 0.00024 20.0 0.1 0.0011 17.9 0.0 1.9 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DUF2207 PF09972.4 gi|307594845|ref|YP_003901162.1| - 0.22 10.0 0.9 0.23 10.0 0.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TRAP-gamma PF07074.7 gi|307594845|ref|YP_003901162.1| - 0.76 9.2 2.9 1 8.8 2.0 1.2 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) Adeno_E3_CR2 PF02439.10 gi|307594846|ref|YP_003901163.1| - 0.012 15.1 3.1 0.022 14.2 2.1 1.4 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 DUF912 PF06024.7 gi|307594846|ref|YP_003901163.1| - 0.012 15.5 2.9 0.021 14.8 2.0 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) PRA1 PF03208.14 gi|307594846|ref|YP_003901163.1| - 0.027 13.8 0.5 0.042 13.2 0.3 1.3 1 0 0 1 1 1 0 PRA1 family protein BatA PF07584.6 gi|307594846|ref|YP_003901163.1| - 0.073 13.2 2.4 0.27 11.4 0.3 2.3 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal Baculo_11_kDa PF06143.6 gi|307594846|ref|YP_003901163.1| - 0.081 12.2 1.3 0.13 11.6 0.9 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family TMEM154 PF15102.1 gi|307594846|ref|YP_003901163.1| - 0.2 11.3 2.2 0.3 10.7 1.5 1.2 1 0 0 1 1 1 0 TMEM154 protein family P12 PF12669.2 gi|307594846|ref|YP_003901163.1| - 0.26 11.5 0.3 0.26 11.5 0.2 1.7 2 0 0 2 2 2 0 Virus attachment protein p12 family SKG6 PF08693.5 gi|307594846|ref|YP_003901163.1| - 0.49 9.7 3.3 1.3 8.4 2.3 1.7 1 0 0 1 1 1 0 Transmembrane alpha-helix domain DUF2207 PF09972.4 gi|307594846|ref|YP_003901163.1| - 0.56 8.7 2.5 0.73 8.3 1.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Rifin_STEVOR PF02009.11 gi|307594846|ref|YP_003901163.1| - 1.2 8.7 7.6 3 7.3 5.4 1.4 2 0 0 2 2 2 0 Rifin/stevor family DUF4131 PF13567.1 gi|307594846|ref|YP_003901163.1| - 1.5 8.1 6.2 2.2 7.6 4.1 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) GTP_EFTU PF00009.22 gi|307594847|ref|YP_003901164.1| - 9.3e-35 119.7 0.0 2.1e-34 118.6 0.0 1.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|307594847|ref|YP_003901164.1| - 4.2e-16 58.7 0.1 8.7e-16 57.7 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|307594847|ref|YP_003901164.1| - 6e-08 32.6 2.2 1.4e-07 31.4 1.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|307594847|ref|YP_003901164.1| - 0.00063 19.6 0.0 0.0013 18.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|307594847|ref|YP_003901164.1| - 0.0011 18.4 0.2 0.31 10.5 0.1 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|307594847|ref|YP_003901164.1| - 0.021 15.2 0.0 0.23 11.9 0.0 2.4 1 1 0 1 1 1 0 Miro-like protein SRPRB PF09439.5 gi|307594847|ref|YP_003901164.1| - 0.12 11.5 0.0 4.4 6.4 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit GTP_EFTU_D4 PF14578.1 gi|307594847|ref|YP_003901164.1| - 0.4 10.3 4.3 7.8 6.2 1.7 3.5 2 1 0 2 2 2 0 Elongation factor Tu domain 4 Fcf1 PF04900.7 gi|307594848|ref|YP_003901165.1| - 0.0017 18.4 0.0 0.0023 17.9 0.0 1.2 1 0 0 1 1 1 1 Fcf1 Ammonium_transp PF00909.16 gi|307594849|ref|YP_003901166.1| - 3.4e-90 302.3 30.0 4e-90 302.1 20.8 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family Gln-synt_C PF00120.19 gi|307594850|ref|YP_003901167.1| - 9.7e-82 273.9 0.0 1.3e-81 273.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|307594850|ref|YP_003901167.1| - 1.2e-12 47.2 0.7 2.2e-12 46.3 0.2 1.7 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain DUF2281 PF10047.4 gi|307594851|ref|YP_003901168.1| - 1.1e-05 25.6 0.2 6.4e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2281) GARS_A PF01071.14 gi|307594851|ref|YP_003901168.1| - 0.011 15.2 0.1 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Sds3 PF08598.6 gi|307594851|ref|YP_003901168.1| - 0.033 13.7 3.5 0.042 13.3 2.4 1.1 1 0 0 1 1 1 0 Sds3-like FlaG PF03646.10 gi|307594851|ref|YP_003901168.1| - 0.033 14.3 0.3 0.06 13.4 0.2 1.3 1 0 0 1 1 1 0 FlaG protein DUF3164 PF11363.3 gi|307594851|ref|YP_003901168.1| - 0.036 13.4 0.0 0.054 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3164) Thioredoxin PF00085.15 gi|307594852|ref|YP_003901169.1| - 6e-23 80.5 0.0 7.8e-23 80.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|307594852|ref|YP_003901169.1| - 4.7e-07 29.9 0.2 4e-05 23.7 0.2 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|307594852|ref|YP_003901169.1| - 0.00011 22.2 0.0 0.048 13.7 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|307594852|ref|YP_003901169.1| - 0.00086 19.0 0.0 0.0015 18.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|307594852|ref|YP_003901169.1| - 0.0052 16.7 0.0 0.0074 16.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like HyaE PF07449.6 gi|307594852|ref|YP_003901169.1| - 0.044 13.6 0.0 0.088 12.7 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.16 gi|307594852|ref|YP_003901169.1| - 0.17 11.6 0.1 1.1 8.9 0.1 1.9 1 1 1 2 2 2 0 AhpC/TSA family TatD_DNase PF01026.16 gi|307594853|ref|YP_003901170.1| - 1.5e-22 80.0 0.0 1.7e-22 79.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase DUF2016 PF09436.5 gi|307594853|ref|YP_003901170.1| - 0.041 13.4 0.2 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2016) tRNA_m1G_MT PF01746.16 gi|307594854|ref|YP_003901171.1| - 9.7e-15 54.6 0.0 3e-14 53.0 0.0 1.7 1 1 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase PhoU PF01895.14 gi|307594854|ref|YP_003901171.1| - 0.1 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 PhoU domain Ribosomal_L34e PF01199.13 gi|307594855|ref|YP_003901172.1| - 2.3e-23 82.2 3.1 2.6e-23 82.0 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L34e zf-RING_2 PF13639.1 gi|307594855|ref|YP_003901172.1| - 0.025 14.4 0.3 0.33 10.8 0.1 2.3 2 1 0 2 2 2 0 Ring finger domain zf-P11 PF03854.9 gi|307594855|ref|YP_003901172.1| - 0.041 13.3 1.4 1.8 8.0 0.1 2.2 2 0 0 2 2 2 0 P-11 zinc finger Zn_ribbon_recom PF13408.1 gi|307594855|ref|YP_003901172.1| - 0.066 13.4 0.7 0.066 13.4 0.5 1.6 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DUF4428 PF14471.1 gi|307594855|ref|YP_003901172.1| - 0.072 12.8 0.2 6.3 6.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Endonuclease_7 PF02945.10 gi|307594855|ref|YP_003901172.1| - 0.087 12.5 0.4 0.098 12.3 0.3 1.2 1 0 0 1 1 1 0 Recombination endonuclease VII DUF2197 PF09963.4 gi|307594855|ref|YP_003901172.1| - 0.18 11.7 0.5 0.33 10.9 0.0 1.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) EndIII_4Fe-2S PF10576.4 gi|307594855|ref|YP_003901172.1| - 0.63 10.3 0.3 0.63 10.3 0.2 2.3 2 0 0 2 2 2 0 Iron-sulfur binding domain of endonuclease III Cytidylate_kin2 PF13189.1 gi|307594856|ref|YP_003901173.1| - 5.8e-27 94.7 4.8 1.6e-25 90.0 3.3 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|307594856|ref|YP_003901173.1| - 1e-15 58.1 0.6 1.6e-15 57.5 0.4 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|307594856|ref|YP_003901173.1| - 4.2e-14 53.4 1.7 7.7e-14 52.5 1.2 1.6 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|307594856|ref|YP_003901173.1| - 6.1e-07 29.4 0.6 1.8e-06 27.9 0.4 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.1 gi|307594856|ref|YP_003901173.1| - 8.4e-06 25.7 0.3 6.6e-05 22.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain PRK PF00485.13 gi|307594856|ref|YP_003901173.1| - 1.3e-05 24.8 0.5 0.0031 17.1 0.0 2.2 1 1 1 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.1 gi|307594856|ref|YP_003901173.1| - 1.7e-05 24.8 0.4 5.2e-05 23.2 0.1 1.8 1 1 1 2 2 2 1 AAA domain Cytidylate_kin PF02224.13 gi|307594856|ref|YP_003901173.1| - 2.8e-05 23.5 2.7 4.1e-05 23.0 1.9 1.2 1 0 0 1 1 1 1 Cytidylate kinase CoaE PF01121.15 gi|307594856|ref|YP_003901173.1| - 4.7e-05 22.8 0.2 0.019 14.3 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase AAA_16 PF13191.1 gi|307594856|ref|YP_003901173.1| - 0.0005 20.1 1.1 0.00079 19.4 0.8 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|307594856|ref|YP_003901173.1| - 0.0017 18.5 0.0 0.0034 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|307594856|ref|YP_003901173.1| - 0.0044 16.8 0.0 0.011 15.6 0.0 1.7 2 0 0 2 2 2 1 Adenylate kinase KTI12 PF08433.5 gi|307594856|ref|YP_003901173.1| - 0.0058 15.8 0.0 0.0082 15.3 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|307594856|ref|YP_003901173.1| - 0.0065 15.5 0.0 0.02 13.9 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|307594856|ref|YP_003901173.1| - 0.0072 16.0 0.1 0.026 14.2 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|307594856|ref|YP_003901173.1| - 0.0091 16.2 0.0 0.018 15.2 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|307594856|ref|YP_003901173.1| - 0.027 13.8 0.3 2.5 7.4 0.0 2.3 1 1 1 2 2 2 0 Thymidylate kinase APS_kinase PF01583.15 gi|307594856|ref|YP_003901173.1| - 0.03 13.9 0.1 0.098 12.3 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_14 PF13173.1 gi|307594856|ref|YP_003901173.1| - 0.036 13.9 0.1 0.2 11.5 0.0 2.3 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|307594856|ref|YP_003901173.1| - 0.068 12.8 0.0 0.15 11.7 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 TMEM206 PF15122.1 gi|307594858|ref|YP_003901175.1| - 0.095 11.5 0.9 0.098 11.5 0.6 1.1 1 0 0 1 1 1 0 TMEM206 protein family Memo PF01875.12 gi|307594859|ref|YP_003901176.1| - 6.6e-79 264.6 0.0 7.5e-79 264.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein Ribosomal_S2 PF00318.15 gi|307594860|ref|YP_003901177.1| - 2.6e-37 128.0 0.0 8.6e-21 74.1 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.1 gi|307594860|ref|YP_003901177.1| - 0.11 11.7 0.2 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain Enolase_C PF00113.17 gi|307594861|ref|YP_003901178.1| - 2.9e-62 210.3 0.0 4.3e-62 209.7 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|307594861|ref|YP_003901178.1| - 3.4e-38 130.5 0.1 6.6e-38 129.6 0.1 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|307594861|ref|YP_003901178.1| - 0.0077 16.7 0.0 0.02 15.3 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|307594861|ref|YP_003901178.1| - 0.0081 16.1 0.0 0.075 13.0 0.0 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like Hydrolase_3 PF08282.7 gi|307594862|ref|YP_003901179.1| - 1.2e-09 38.1 0.2 1.5e-08 34.5 0.1 2.0 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|307594862|ref|YP_003901179.1| - 6.2e-09 36.2 0.1 8.7e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|307594862|ref|YP_003901179.1| - 6.5e-06 26.7 0.0 0.00035 21.0 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|307594862|ref|YP_003901179.1| - 0.005 17.0 0.1 0.02 15.1 0.1 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Legionella_OMP PF05150.7 gi|307594862|ref|YP_003901179.1| - 0.048 12.7 0.5 0.085 11.9 0.1 1.6 1 1 0 1 1 1 0 Legionella pneumophila major outer membrane protein precursor UMPH-1 PF05822.7 gi|307594862|ref|YP_003901179.1| - 0.059 12.6 0.0 0.096 11.9 0.0 1.4 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) HSP20 PF00011.16 gi|307594863|ref|YP_003901180.1| - 0.0012 18.7 0.1 0.026 14.3 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family Carb_kinase PF01256.12 gi|307594864|ref|YP_003901181.1| - 1.9e-51 174.7 1.0 2.6e-51 174.2 0.7 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|307594864|ref|YP_003901181.1| - 5.1e-46 156.3 0.1 1.3e-45 155.0 0.0 1.7 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|307594864|ref|YP_003901181.1| - 4.7e-07 29.2 0.4 8.7e-07 28.3 0.3 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|307594864|ref|YP_003901181.1| - 0.0004 19.6 0.0 0.00071 18.8 0.0 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase YwiC PF14256.1 gi|307594866|ref|YP_003901183.1| - 0.031 14.3 18.5 0.058 13.4 6.0 3.2 3 1 0 3 3 3 0 YwiC-like protein DUF1500 PF07389.7 gi|307594867|ref|YP_003901184.1| - 0.9 9.5 7.4 0.46 10.5 2.7 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1500) Baculo_PEP_C PF04513.7 gi|307594867|ref|YP_003901184.1| - 2.6 7.8 23.7 2 8.2 14.3 2.0 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus PEPCK PF00821.13 gi|307594868|ref|YP_003901185.1| - 1.6e-200 667.2 0.0 1.9e-200 666.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase HEPN PF05168.9 gi|307594869|ref|YP_003901186.1| - 1.8e-30 105.2 0.0 2e-30 105.1 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|307594870|ref|YP_003901187.1| - 3.7e-09 36.7 0.0 4.1e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|307594870|ref|YP_003901187.1| - 0.0014 18.2 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 MFS_1 PF07690.11 gi|307594872|ref|YP_003901189.1| - 5.2e-27 94.4 72.8 8e-17 60.9 22.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|307594872|ref|YP_003901189.1| - 2.7e-05 22.7 14.5 2.7e-05 22.7 10.0 2.9 1 1 1 2 2 2 1 MFS/sugar transport protein Sugar_tr PF00083.19 gi|307594872|ref|YP_003901189.1| - 3.9e-05 22.4 16.8 3.9e-05 22.4 11.7 2.9 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|307594872|ref|YP_003901189.1| - 0.01 15.5 0.2 0.01 15.5 0.2 4.3 5 1 0 5 5 5 0 MFS_1 like family ThiF PF00899.16 gi|307594873|ref|YP_003901190.1| - 1.2e-45 154.7 0.2 1.7e-45 154.1 0.2 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|307594873|ref|YP_003901190.1| - 1.3e-19 69.5 0.1 2.5e-19 68.6 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|307594873|ref|YP_003901190.1| - 0.0013 18.8 0.8 0.0063 16.6 0.2 2.2 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|307594873|ref|YP_003901190.1| - 0.033 13.1 0.2 0.045 12.7 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Rad50_zn_hook PF04423.9 gi|307594873|ref|YP_003901190.1| - 0.12 11.8 0.4 0.37 10.2 0.1 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif DapB_N PF01113.15 gi|307594873|ref|YP_003901190.1| - 0.13 12.2 0.6 0.85 9.5 0.3 2.1 1 1 1 2 2 2 0 Dihydrodipicolinate reductase, N-terminus HEPN PF05168.9 gi|307594873|ref|YP_003901190.1| - 0.14 12.0 0.1 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 HEPN domain Ldh_1_N PF00056.18 gi|307594873|ref|YP_003901190.1| - 3.3 7.5 5.0 52 3.6 3.5 2.2 1 1 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DHHA1 PF02272.14 gi|307594874|ref|YP_003901191.1| - 0.0011 18.6 0.1 0.0023 17.5 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|307594874|ref|YP_003901191.1| - 0.022 14.3 0.0 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 DHH family UPRTase PF14681.1 gi|307594875|ref|YP_003901192.1| - 4.1e-55 186.2 0.2 5e-55 185.9 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|307594875|ref|YP_003901192.1| - 7.4e-07 28.9 1.6 1.3e-06 28.1 1.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain NAD_binding_7 PF13241.1 gi|307594876|ref|YP_003901193.1| - 6.6e-24 84.1 0.0 1.2e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|307594876|ref|YP_003901193.1| - 2e-07 30.9 0.1 4.5e-07 29.8 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain NmrA PF05368.8 gi|307594876|ref|YP_003901193.1| - 0.00059 19.1 0.1 0.00082 18.6 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.1 gi|307594876|ref|YP_003901193.1| - 0.001 19.1 0.1 0.0012 18.8 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding PrkA PF06798.7 gi|307594876|ref|YP_003901193.1| - 0.013 14.8 0.2 0.02 14.1 0.1 1.3 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain FAD_binding_2 PF00890.19 gi|307594876|ref|YP_003901193.1| - 0.023 13.5 0.0 0.035 12.9 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain DUF3658 PF12395.3 gi|307594876|ref|YP_003901193.1| - 0.078 12.5 0.1 0.76 9.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function Pyr_redox PF00070.22 gi|307594876|ref|YP_003901193.1| - 0.36 11.2 2.3 0.35 11.2 0.3 2.0 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase ECH PF00378.15 gi|307594878|ref|YP_003901195.1| - 5.2e-27 94.5 0.0 6.1e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Chordopox_E11 PF06138.7 gi|307594878|ref|YP_003901195.1| - 0.051 13.6 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 Chordopoxvirus E11 protein CLP_protease PF00574.18 gi|307594878|ref|YP_003901195.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Clp protease Transp_cyt_pur PF02133.10 gi|307594879|ref|YP_003901196.1| - 3.5e-63 213.7 47.1 4.6e-63 213.3 32.6 1.2 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin AA_kinase PF00696.23 gi|307594880|ref|YP_003901197.1| - 6.5e-30 104.4 0.0 7.7e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Gar1 PF04410.9 gi|307594881|ref|YP_003901198.1| - 0.0027 17.1 0.0 0.003 17.0 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TF_Zn_Ribbon PF08271.7 gi|307594882|ref|YP_003901199.1| - 3.3e-19 67.9 1.1 6.1e-19 67.0 0.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.14 gi|307594882|ref|YP_003901199.1| - 2.8e-18 65.4 0.6 1.6e-09 37.4 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat RRN7 PF11781.3 gi|307594882|ref|YP_003901199.1| - 0.0018 17.7 0.0 0.0032 16.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ribbon_3 PF13248.1 gi|307594882|ref|YP_003901199.1| - 0.0022 17.1 0.3 0.0039 16.3 0.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|307594882|ref|YP_003901199.1| - 0.0025 17.3 0.4 0.0051 16.3 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Cyclin_N PF00134.18 gi|307594882|ref|YP_003901199.1| - 0.0059 16.1 0.4 0.33 10.5 0.1 2.2 1 1 1 2 2 2 1 Cyclin, N-terminal domain Trm112p PF03966.11 gi|307594882|ref|YP_003901199.1| - 0.026 14.8 1.6 0.5 10.7 1.1 2.6 1 1 0 1 1 1 0 Trm112p-like protein Zn_Tnp_IS1595 PF12760.2 gi|307594882|ref|YP_003901199.1| - 0.031 14.0 1.3 0.04 13.7 0.1 1.8 2 0 0 2 2 2 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|307594882|ref|YP_003901199.1| - 0.046 13.1 0.5 0.19 11.1 0.4 2.0 1 1 1 2 2 2 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|307594882|ref|YP_003901199.1| - 0.056 13.5 0.2 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase RNA_pol_Rpc34 PF05158.7 gi|307594883|ref|YP_003901200.1| - 4.1e-09 36.0 0.4 6.6e-06 25.5 0.3 2.1 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit MarR PF01047.17 gi|307594883|ref|YP_003901200.1| - 0.00018 21.1 0.0 0.00031 20.3 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|307594883|ref|YP_003901200.1| - 0.0055 16.3 0.0 0.0098 15.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|307594883|ref|YP_003901200.1| - 0.011 16.0 0.0 0.022 15.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|307594883|ref|YP_003901200.1| - 0.061 13.1 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC PadR PF03551.9 gi|307594883|ref|YP_003901200.1| - 0.091 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family LigT_PEase PF02834.11 gi|307594884|ref|YP_003901201.1| - 1.2e-30 105.3 0.0 1.9e-20 72.5 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|307594884|ref|YP_003901201.1| - 2.3e-13 50.1 0.0 2.7e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|307594884|ref|YP_003901201.1| - 2.4e-13 50.2 0.0 3.5e-13 49.7 0.0 1.3 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|307594884|ref|YP_003901201.1| - 0.03 13.3 0.0 0.036 13.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein Corona_NS2A PF05213.7 gi|307594884|ref|YP_003901201.1| - 0.13 11.5 0.1 0.18 11.0 0.0 1.3 1 1 0 1 1 1 0 Coronavirus NS2A protein DUF2721 PF11026.3 gi|307594885|ref|YP_003901202.1| - 0.06 12.9 2.1 0.072 12.7 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF3995 PF13160.1 gi|307594885|ref|YP_003901202.1| - 0.073 13.1 1.3 0.085 12.9 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3995) TRIQK PF15168.1 gi|307594885|ref|YP_003901202.1| - 0.17 11.8 2.8 0.24 11.3 0.1 1.9 1 1 1 2 2 2 0 Triple QxxK/R motif-containing protein family DUF1182 PF06681.8 gi|307594885|ref|YP_003901202.1| - 0.19 10.8 2.8 0.21 10.8 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1182) MARVEL PF01284.18 gi|307594885|ref|YP_003901202.1| - 0.22 11.3 2.5 0.25 11.1 1.7 1.0 1 0 0 1 1 1 0 Membrane-associating domain SurA_N_3 PF13624.1 gi|307594885|ref|YP_003901202.1| - 0.26 11.2 1.5 0.22 11.5 0.4 1.4 1 1 0 1 1 1 0 SurA N-terminal domain DUF202 PF02656.10 gi|307594885|ref|YP_003901202.1| - 0.42 10.8 4.0 0.53 10.5 2.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) SUR7 PF06687.7 gi|307594885|ref|YP_003901202.1| - 0.89 9.0 4.3 1 8.9 3.0 1.0 1 0 0 1 1 1 0 SUR7/PalI family DUF4389 PF14333.1 gi|307594885|ref|YP_003901202.1| - 1.1 9.0 6.0 0.37 10.5 2.4 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4389) CcmD PF04995.9 gi|307594885|ref|YP_003901202.1| - 5.8 6.7 6.1 0.61 9.8 0.3 2.0 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Phage_integrase PF00589.17 gi|307594887|ref|YP_003901204.1| - 1.8e-10 40.7 0.0 2.4e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family NPCBM_assoc PF10633.4 gi|307594888|ref|YP_003901205.1| - 3.7e-15 55.7 1.6 7.7e-05 22.6 0.0 6.3 5 1 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|307594888|ref|YP_003901205.1| - 8.1e-09 35.4 6.1 0.0033 17.4 0.0 4.5 5 1 0 5 5 5 3 CARDB TRAP_beta PF05753.9 gi|307594888|ref|YP_003901205.1| - 0.0064 15.6 3.7 4.6 6.3 0.0 4.5 4 1 0 4 4 4 1 Translocon-associated protein beta (TRAPB) DUF2207 PF09972.4 gi|307594888|ref|YP_003901205.1| - 0.015 13.9 0.1 0.024 13.2 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) RCR PF12273.3 gi|307594888|ref|YP_003901205.1| - 0.038 14.5 0.7 0.11 13.0 0.5 1.7 1 0 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red Cadherin-like PF12733.2 gi|307594888|ref|YP_003901205.1| - 0.05 13.8 0.0 0.05 13.8 0.0 4.3 4 1 0 4 4 4 0 Cadherin-like beta sandwich domain NS3_envE PF02723.9 gi|307594888|ref|YP_003901205.1| - 5.9 6.8 9.4 1.8 8.5 3.2 2.3 2 0 0 2 2 2 0 Non-structural protein NS3/Small envelope protein E MFS_1 PF07690.11 gi|307594889|ref|YP_003901206.1| - 1.8e-57 194.6 79.9 3.7e-49 167.3 31.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307594889|ref|YP_003901206.1| - 9.7e-15 54.0 11.2 9.7e-15 54.0 7.8 3.6 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|307594889|ref|YP_003901206.1| - 0.00024 19.6 8.2 0.00024 19.6 5.7 4.1 2 1 2 4 4 4 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|307594889|ref|YP_003901206.1| - 0.034 12.2 31.2 0.066 11.3 11.3 2.9 2 1 0 2 2 2 0 Transmembrane secretion effector DUF2243 PF10002.4 gi|307594889|ref|YP_003901206.1| - 0.11 12.2 3.8 0.094 12.5 0.5 2.7 2 1 0 2 2 2 0 Predicted membrane protein (DUF2243) AIRS PF00586.19 gi|307594890|ref|YP_003901207.1| - 2.2e-07 31.0 0.0 4.6e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF92 PF01940.11 gi|307594892|ref|YP_003901209.1| - 8.4e-53 178.8 6.7 1.1e-52 178.4 4.6 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF92 zf-HIT PF04438.11 gi|307594892|ref|YP_003901209.1| - 0.13 11.9 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 HIT zinc finger VIT1 PF01988.14 gi|307594892|ref|YP_003901209.1| - 0.14 11.6 0.0 0.14 11.6 0.0 3.8 3 1 0 4 4 4 0 VIT family Elf1 PF05129.8 gi|307594893|ref|YP_003901210.1| - 8.8e-20 70.2 0.0 1.3e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|307594893|ref|YP_003901210.1| - 0.00018 21.7 0.1 0.00032 20.9 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.2 gi|307594893|ref|YP_003901210.1| - 0.0069 16.1 0.3 0.012 15.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|307594893|ref|YP_003901210.1| - 0.041 13.0 7.6 0.19 10.9 5.2 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.8 gi|307594893|ref|YP_003901210.1| - 0.046 13.2 0.1 0.1 12.1 0.1 1.6 1 0 0 1 1 1 0 CSL zinc finger DUF164 PF02591.10 gi|307594893|ref|YP_003901210.1| - 0.048 13.4 0.2 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain Ribosomal_L32p PF01783.18 gi|307594893|ref|YP_003901210.1| - 0.061 13.5 1.1 0.6 10.3 0.1 2.3 2 0 0 2 2 2 0 Ribosomal L32p protein family TF_Zn_Ribbon PF08271.7 gi|307594893|ref|YP_003901210.1| - 0.064 12.5 2.2 0.2 11.0 1.5 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|307594893|ref|YP_003901210.1| - 0.07 12.6 6.0 1.7 8.2 4.2 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-CHY PF05495.7 gi|307594893|ref|YP_003901210.1| - 0.12 12.5 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 CHY zinc finger Cys_rich_CPXG PF14255.1 gi|307594893|ref|YP_003901210.1| - 0.13 12.1 1.0 0.42 10.4 0.7 1.9 1 1 0 1 1 1 0 Cysteine-rich CPXCG Nudix_N_2 PF14803.1 gi|307594893|ref|YP_003901210.1| - 0.13 11.9 0.9 0.33 10.6 0.7 1.6 1 1 0 1 1 1 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|307594893|ref|YP_003901210.1| - 0.14 12.1 1.5 0.68 10.0 1.0 2.2 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|307594893|ref|YP_003901210.1| - 0.16 11.6 0.5 0.35 10.5 0.4 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Zn_ribbon_recom PF13408.1 gi|307594893|ref|YP_003901210.1| - 0.3 11.3 2.1 2.3 8.5 1.5 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Auto_anti-p27 PF06677.7 gi|307594893|ref|YP_003901210.1| - 0.32 10.8 2.3 0.7 9.7 1.6 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin PF00301.15 gi|307594893|ref|YP_003901210.1| - 0.38 10.6 0.1 0.38 10.6 0.1 2.4 3 0 0 3 3 2 0 Rubredoxin DNA_ligase_ZBD PF03119.11 gi|307594893|ref|YP_003901210.1| - 0.4 10.4 2.5 0.93 9.2 1.7 1.7 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-H2C2_2 PF13465.1 gi|307594893|ref|YP_003901210.1| - 0.89 9.9 2.9 1.5 9.2 0.7 2.0 2 0 0 2 2 2 0 Zinc-finger double domain zf-IS66 PF13005.2 gi|307594893|ref|YP_003901210.1| - 0.96 9.4 0.1 0.96 9.4 0.1 2.4 3 0 0 3 3 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.2 gi|307594893|ref|YP_003901210.1| - 1.5 8.6 3.7 8 6.3 2.8 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|307594893|ref|YP_003901210.1| - 1.6 8.3 4.5 13 5.5 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|307594893|ref|YP_003901210.1| - 2.4 7.9 4.5 27 4.5 3.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PcrB PF01884.12 gi|307594894|ref|YP_003901211.1| - 4e-69 232.3 0.1 4.6e-69 232.1 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|307594894|ref|YP_003901211.1| - 1.6e-11 43.9 0.0 4e-11 42.6 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|307594894|ref|YP_003901211.1| - 1e-05 24.2 0.0 2.2e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Dus PF01207.12 gi|307594894|ref|YP_003901211.1| - 0.00015 20.6 0.0 0.00039 19.3 0.0 1.6 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|307594894|ref|YP_003901211.1| - 0.00068 18.7 0.2 0.058 12.4 0.0 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|307594894|ref|YP_003901211.1| - 0.0017 17.2 0.0 0.0047 15.8 0.0 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|307594894|ref|YP_003901211.1| - 0.014 14.3 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase NanE PF04131.9 gi|307594894|ref|YP_003901211.1| - 0.017 14.0 0.0 0.2 10.5 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|307594894|ref|YP_003901211.1| - 0.02 14.0 0.0 0.045 12.8 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI DHDPS PF00701.17 gi|307594894|ref|YP_003901211.1| - 0.091 11.3 0.0 8.2 4.9 0.0 2.3 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family Ribul_P_3_epim PF00834.14 gi|307594894|ref|YP_003901211.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Sec61_beta PF03911.11 gi|307594895|ref|YP_003901212.1| - 1.8e-06 27.6 2.5 2.4e-06 27.2 1.8 1.2 1 0 0 1 1 1 1 Sec61beta family zf-ZPR1 PF03367.8 gi|307594896|ref|YP_003901213.1| - 2.6e-33 114.4 0.0 3e-33 114.2 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|307594896|ref|YP_003901213.1| - 0.0057 16.9 0.2 0.012 15.8 0.1 1.6 1 1 0 1 1 1 1 Restriction alleviation protein Lar CARD PF00619.16 gi|307594896|ref|YP_003901213.1| - 0.13 12.1 0.7 0.2 11.4 0.5 1.2 1 0 0 1 1 1 0 Caspase recruitment domain zf-ribbon_3 PF13248.1 gi|307594896|ref|YP_003901213.1| - 0.14 11.3 1.1 0.46 9.7 0.9 1.8 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.1 gi|307594896|ref|YP_003901213.1| - 0.15 12.0 0.5 0.52 10.2 0.1 1.9 2 1 0 2 2 2 0 CpXC protein DUF929 PF06053.6 gi|307594896|ref|YP_003901213.1| - 0.16 11.0 0.0 0.27 10.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF929) Rad50_zn_hook PF04423.9 gi|307594896|ref|YP_003901213.1| - 0.24 10.8 0.3 0.24 10.8 0.2 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif Ribonuclease PF00545.15 gi|307594896|ref|YP_003901213.1| - 0.28 11.2 1.7 0.33 11.0 0.5 1.6 2 0 0 2 2 1 0 ribonuclease UPF0547 PF10571.4 gi|307594896|ref|YP_003901213.1| - 0.46 10.2 2.2 8.1 6.2 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|307594896|ref|YP_003901213.1| - 0.49 9.9 2.5 19 4.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|307594896|ref|YP_003901213.1| - 8.1 6.2 6.2 4.7 6.9 0.5 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Phage_holin_4 PF05105.7 gi|307594897|ref|YP_003901214.1| - 3.2 7.4 7.7 4.5 6.9 5.3 1.1 1 0 0 1 1 1 0 Holin family DUF4229 PF14012.1 gi|307594897|ref|YP_003901214.1| - 7.1 6.6 20.6 4.3 7.2 6.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) HIT PF01230.18 gi|307594898|ref|YP_003901215.1| - 1.5e-28 99.2 0.8 1.9e-28 98.8 0.3 1.3 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|307594898|ref|YP_003901215.1| - 3.1e-17 62.8 0.2 3.5e-17 62.7 0.2 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|307594898|ref|YP_003901215.1| - 0.0018 17.9 1.0 0.0027 17.3 0.7 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 PrgI PF12666.2 gi|307594899|ref|YP_003901216.1| - 0.007 16.4 8.6 0.007 16.4 6.0 1.6 1 1 1 2 2 2 1 PrgI family protein ABC2_membrane_4 PF12730.2 gi|307594899|ref|YP_003901216.1| - 0.3 10.2 16.3 0.34 10.0 11.3 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein OCIA PF07051.6 gi|307594899|ref|YP_003901216.1| - 0.5 9.7 3.1 0.8 9.1 0.2 2.2 1 1 1 2 2 2 0 Ovarian carcinoma immunoreactive antigen (OCIA) TraL PF07178.6 gi|307594899|ref|YP_003901216.1| - 0.68 9.9 7.1 4.2 7.4 0.2 2.3 1 1 1 2 2 2 0 TraL protein MoeA_N PF03453.12 gi|307594901|ref|YP_003901218.1| - 2e-44 150.7 0.2 1.3e-43 148.1 0.1 2.2 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|307594901|ref|YP_003901218.1| - 8e-25 86.9 0.2 1.4e-24 86.1 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|307594901|ref|YP_003901218.1| - 9.5e-07 28.6 0.0 2.1e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) S4_2 PF13275.1 gi|307594901|ref|YP_003901218.1| - 0.049 13.2 0.0 0.17 11.4 0.0 2.0 1 0 0 1 1 1 0 S4 domain Herpes_teg_N PF04843.7 gi|307594902|ref|YP_003901219.1| - 0.085 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus tegument protein, N-terminal conserved region ABC2_membrane PF01061.19 gi|307594903|ref|YP_003901220.1| - 0.0095 15.1 2.1 0.014 14.6 1.5 1.2 1 0 0 1 1 1 1 ABC-2 type transporter MgtE PF01769.11 gi|307594903|ref|YP_003901220.1| - 0.03 14.5 3.0 0.042 14.1 2.1 1.2 1 0 0 1 1 1 0 Divalent cation transporter DUF898 PF05987.8 gi|307594903|ref|YP_003901220.1| - 0.047 12.5 0.8 0.061 12.2 0.6 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) Pox_A14 PF05767.7 gi|307594903|ref|YP_003901220.1| - 0.054 13.4 2.7 0.082 12.8 1.9 1.3 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 RDD PF06271.7 gi|307594903|ref|YP_003901220.1| - 0.071 13.0 2.3 0.12 12.2 1.6 1.3 1 0 0 1 1 1 0 RDD family DUF3290 PF11694.3 gi|307594903|ref|YP_003901220.1| - 0.15 11.7 5.6 0.23 11.1 3.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) ATP_synt_H PF05493.8 gi|307594903|ref|YP_003901220.1| - 0.35 10.9 2.5 0.59 10.2 1.7 1.3 1 0 0 1 1 1 0 ATP synthase subunit H Phtf-FEM1B_bdg PF12129.3 gi|307594903|ref|YP_003901220.1| - 0.89 8.8 9.0 0.8 9.0 4.8 1.8 1 1 1 2 2 2 0 Male germ-cell putative homeodomain transcription factor LAGLIDADG_3 PF14528.1 gi|307594905|ref|YP_003901222.1| - 0.012 15.8 0.9 0.13 12.5 0.1 2.9 3 0 0 3 3 3 0 LAGLIDADG-like domain Med22 PF06179.7 gi|307594905|ref|YP_003901222.1| - 0.013 15.5 2.4 0.024 14.6 1.0 2.0 2 0 0 2 2 2 0 Surfeit locus protein 5 subunit 22 of Mediator complex ATP-cone PF03477.11 gi|307594905|ref|YP_003901222.1| - 0.29 11.6 2.8 0.35 11.3 0.2 2.4 3 0 0 3 3 3 0 ATP cone domain Cren7 PF11520.3 gi|307594906|ref|YP_003901223.1| - 3.3e-17 61.8 1.8 3.8e-17 61.6 1.2 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 PIN_3 PF13470.1 gi|307594907|ref|YP_003901224.1| - 0.00067 20.3 0.1 0.0014 19.3 0.1 1.6 1 1 0 1 1 1 1 PIN domain PIN PF01850.16 gi|307594907|ref|YP_003901224.1| - 0.036 14.4 0.8 0.036 14.4 0.5 1.8 2 1 0 2 2 2 0 PIN domain PMBR PF09373.5 gi|307594908|ref|YP_003901225.1| - 0.16 12.0 0.7 34 4.6 0.0 3.0 3 0 0 3 3 3 0 Pseudomurein-binding repeat Sugar_tr PF00083.19 gi|307594909|ref|YP_003901226.1| - 2.8e-27 95.4 46.2 4e-23 81.7 12.7 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|307594909|ref|YP_003901226.1| - 3.2e-25 88.5 74.8 2.9e-21 75.5 29.5 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|307594909|ref|YP_003901226.1| - 0.0012 17.2 17.5 0.0012 17.2 12.1 2.9 1 1 2 3 3 3 2 MFS/sugar transport protein Herpes_LAMP2 PF06126.6 gi|307594909|ref|YP_003901226.1| - 0.28 9.5 4.2 3 6.1 0.2 2.2 2 0 0 2 2 2 0 Herpesvirus Latent membrane protein 2 POR PF01558.13 gi|307594910|ref|YP_003901227.1| - 6.7e-34 117.2 0.5 7.8e-34 117.0 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Toxin_R_bind_C PF07951.7 gi|307594910|ref|YP_003901227.1| - 0.031 13.9 0.6 0.04 13.6 0.4 1.1 1 0 0 1 1 1 0 Clostridium neurotoxin, C-terminal receptor binding IstB_IS21 PF01695.12 gi|307594910|ref|YP_003901227.1| - 0.04 13.3 0.2 0.058 12.8 0.2 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein TPP_enzyme_C PF02775.16 gi|307594911|ref|YP_003901228.1| - 5.8e-22 77.9 1.0 1.8e-21 76.3 0.7 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|307594911|ref|YP_003901228.1| - 3.6e-15 56.0 0.1 8.9e-15 54.8 0.0 1.7 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|307594911|ref|YP_003901228.1| - 1.5e-10 40.2 12.6 6.6e-08 31.8 2.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|307594911|ref|YP_003901228.1| - 1.5e-08 34.0 12.7 8e-05 22.3 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|307594911|ref|YP_003901228.1| - 5.3e-07 29.2 0.6 0.0069 15.8 0.1 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.2 gi|307594911|ref|YP_003901228.1| - 2.9e-06 27.5 9.9 9.9e-06 25.8 6.9 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Transketolase_C PF02780.15 gi|307594911|ref|YP_003901228.1| - 1.9e-05 24.5 0.8 4.3e-05 23.4 0.1 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4_6 PF12837.2 gi|307594911|ref|YP_003901228.1| - 2.2e-05 24.1 4.0 2.2e-05 24.1 2.8 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307594911|ref|YP_003901228.1| - 0.00019 21.2 10.9 0.00056 19.7 7.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307594911|ref|YP_003901228.1| - 0.0002 21.0 11.7 0.0018 18.0 2.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307594911|ref|YP_003901228.1| - 0.00087 19.8 6.1 0.073 13.6 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|307594911|ref|YP_003901228.1| - 0.0014 18.9 3.9 0.049 13.9 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307594911|ref|YP_003901228.1| - 0.0017 19.0 6.0 0.0045 17.6 0.8 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|307594911|ref|YP_003901228.1| - 0.0023 18.1 12.0 0.0062 16.7 8.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|307594911|ref|YP_003901228.1| - 0.088 12.8 11.9 0.7 9.9 8.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|307594911|ref|YP_003901228.1| - 0.1 12.5 4.2 0.29 11.0 2.7 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307594911|ref|YP_003901228.1| - 0.37 11.2 14.5 0.075 13.4 3.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|307594911|ref|YP_003901228.1| - 3.9 7.9 13.9 1.1e+02 3.3 9.8 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307594911|ref|YP_003901228.1| - 4 7.8 13.4 10 6.6 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain CarboxypepD_reg PF13620.1 gi|307594912|ref|YP_003901229.1| - 2e-08 34.1 12.1 0.0012 18.8 1.6 5.1 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain MG1 PF11974.3 gi|307594912|ref|YP_003901229.1| - 0.016 15.7 0.3 2.2 8.8 0.0 2.9 3 0 0 3 3 3 0 Alpha-2-macroglobulin MG1 domain UPF0560 PF10577.4 gi|307594912|ref|YP_003901229.1| - 0.13 10.4 0.0 0.2 9.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0560 RHH_1 PF01402.16 gi|307594915|ref|YP_003901232.1| - 2.4e-05 23.9 0.6 0.00029 20.6 0.0 2.9 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|307594915|ref|YP_003901232.1| - 0.004 16.8 0.1 0.011 15.4 0.1 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix domain Rav1p_C PF12234.3 gi|307594915|ref|YP_003901232.1| - 0.0057 14.8 0.1 0.0066 14.6 0.1 1.1 1 0 0 1 1 1 1 RAVE protein 1 C terminal DUF2191 PF09957.4 gi|307594915|ref|YP_003901232.1| - 0.054 13.3 0.3 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) GFO_IDH_MocA PF01408.17 gi|307594916|ref|YP_003901233.1| - 1.1e-14 55.0 0.0 1.8e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|307594916|ref|YP_003901233.1| - 3.7e-05 23.6 0.4 0.012 15.5 0.1 2.4 2 0 0 2 2 2 2 TrkA-N domain GFO_IDH_MocA_C PF02894.12 gi|307594916|ref|YP_003901233.1| - 0.0014 18.3 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|307594916|ref|YP_003901233.1| - 0.007 16.6 0.0 0.0097 16.2 0.0 1.4 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|307594916|ref|YP_003901233.1| - 0.0081 16.6 0.1 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain PDH PF02153.12 gi|307594916|ref|YP_003901233.1| - 0.034 13.0 0.0 0.054 12.3 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase DUF3368 PF11848.3 gi|307594916|ref|YP_003901233.1| - 0.077 12.5 0.6 3.4 7.3 0.0 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF3368) Antitoxin-MazE PF04014.13 gi|307594918|ref|YP_003901235.1| - 2.2e-05 24.0 0.6 0.012 15.3 0.1 2.4 2 0 0 2 2 2 2 Antidote-toxin recognition MazE ABC_tran PF00005.22 gi|307594920|ref|YP_003901237.1| - 2.7e-39 134.5 0.0 1.3e-19 70.8 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|307594920|ref|YP_003901237.1| - 1.4e-14 54.7 1.0 0.00046 20.2 0.0 4.2 3 1 1 4 4 4 3 AAA domain RLI PF04068.10 gi|307594920|ref|YP_003901237.1| - 4.6e-14 51.7 3.6 4.6e-14 51.7 2.5 1.8 2 0 0 2 2 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|307594920|ref|YP_003901237.1| - 2.5e-09 37.9 0.7 0.00053 20.7 0.0 3.5 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|307594920|ref|YP_003901237.1| - 5e-09 35.7 3.2 0.0011 18.2 0.1 3.4 2 2 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.22 gi|307594920|ref|YP_003901237.1| - 3.3e-07 29.6 3.1 3.3e-07 29.6 2.1 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA PF00004.24 gi|307594920|ref|YP_003901237.1| - 5.5e-06 26.6 0.0 0.038 14.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|307594920|ref|YP_003901237.1| - 8.2e-06 25.9 0.1 0.0043 17.0 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain Fer4_21 PF14697.1 gi|307594920|ref|YP_003901237.1| - 1.1e-05 25.1 8.2 1.8e-05 24.5 5.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_33 PF13671.1 gi|307594920|ref|YP_003901237.1| - 2.3e-05 24.2 0.0 0.13 12.1 0.0 2.8 2 1 0 2 2 2 2 AAA domain MobB PF03205.9 gi|307594920|ref|YP_003901237.1| - 5.4e-05 22.9 0.3 0.082 12.6 0.0 3.4 2 1 1 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|307594920|ref|YP_003901237.1| - 7.4e-05 23.0 0.1 0.26 11.6 0.0 2.9 3 0 0 3 3 2 2 AAA domain Fer4_6 PF12837.2 gi|307594920|ref|YP_003901237.1| - 0.00015 21.4 12.7 0.0014 18.3 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_22 PF13401.1 gi|307594920|ref|YP_003901237.1| - 0.00023 21.3 0.1 0.043 13.9 0.0 2.8 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|307594920|ref|YP_003901237.1| - 0.00031 19.8 0.1 0.78 8.7 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus NACHT PF05729.7 gi|307594920|ref|YP_003901237.1| - 0.00093 18.8 0.0 0.083 12.5 0.0 2.3 2 0 0 2 2 2 1 NACHT domain UPF0079 PF02367.12 gi|307594920|ref|YP_003901237.1| - 0.0016 18.0 0.1 0.15 11.6 0.0 2.8 3 0 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 RecA PF00154.16 gi|307594920|ref|YP_003901237.1| - 0.0019 17.3 0.0 0.11 11.5 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_14 PF13173.1 gi|307594920|ref|YP_003901237.1| - 0.0019 18.0 0.0 1.5 8.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|307594920|ref|YP_003901237.1| - 0.0021 17.4 0.1 0.16 11.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain Fer4_10 PF13237.1 gi|307594920|ref|YP_003901237.1| - 0.0029 17.3 9.4 0.0064 16.2 6.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.1 gi|307594920|ref|YP_003901237.1| - 0.0033 17.7 0.0 1.4 9.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|307594920|ref|YP_003901237.1| - 0.0038 17.3 0.0 0.34 11.0 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_15 PF13175.1 gi|307594920|ref|YP_003901237.1| - 0.0062 15.6 0.0 2.7 6.9 0.0 3.1 3 0 0 3 3 3 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|307594920|ref|YP_003901237.1| - 0.0065 16.2 0.0 0.028 14.1 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase AAA_10 PF12846.2 gi|307594920|ref|YP_003901237.1| - 0.0077 15.7 0.1 0.059 12.7 0.0 2.1 2 1 0 2 2 2 1 AAA-like domain SbcCD_C PF13558.1 gi|307594920|ref|YP_003901237.1| - 0.0086 15.9 0.4 1.1 9.2 0.0 3.2 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Fer4_7 PF12838.2 gi|307594920|ref|YP_003901237.1| - 0.0097 16.2 3.1 0.0097 16.2 2.2 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain DUF87 PF01935.12 gi|307594920|ref|YP_003901237.1| - 0.019 14.8 0.3 0.13 12.0 0.0 2.3 3 0 0 3 3 2 0 Domain of unknown function DUF87 Fer4_16 PF13484.1 gi|307594920|ref|YP_003901237.1| - 0.022 15.4 0.3 0.022 15.4 0.2 2.1 2 0 0 2 2 1 0 4Fe-4S double cluster binding domain Lactococcin PF04369.8 gi|307594920|ref|YP_003901237.1| - 0.044 13.6 0.0 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 Lactococcin-like family NB-ARC PF00931.17 gi|307594920|ref|YP_003901237.1| - 0.049 12.4 0.6 1.9 7.2 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain Thymidylate_kin PF02223.12 gi|307594920|ref|YP_003901237.1| - 0.052 12.9 0.0 0.67 9.2 0.0 2.4 2 0 0 2 2 2 0 Thymidylate kinase NTPase_1 PF03266.10 gi|307594920|ref|YP_003901237.1| - 0.054 13.2 0.2 3.5 7.3 0.0 2.9 3 0 0 3 3 2 0 NTPase PRK PF00485.13 gi|307594920|ref|YP_003901237.1| - 0.076 12.5 0.0 0.94 8.9 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF258 PF03193.11 gi|307594920|ref|YP_003901237.1| - 0.08 12.1 0.0 6.1 6.0 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|307594920|ref|YP_003901237.1| - 0.091 12.2 0.1 15 5.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|307594920|ref|YP_003901237.1| - 0.097 12.2 0.1 1.7 8.1 0.0 2.6 3 0 0 3 3 2 0 AAA domain Fer4_9 PF13187.1 gi|307594920|ref|YP_003901237.1| - 0.11 12.7 8.5 0.38 11.0 6.0 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|307594920|ref|YP_003901237.1| - 0.12 12.4 8.0 0.22 11.5 5.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307594920|ref|YP_003901237.1| - 0.13 12.6 11.4 0.094 13.1 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain SRP54 PF00448.17 gi|307594920|ref|YP_003901237.1| - 0.15 11.5 0.1 9.9 5.5 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|307594920|ref|YP_003901237.1| - 0.15 12.5 0.0 30 5.1 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein ATP-synt_ab PF00006.20 gi|307594920|ref|YP_003901237.1| - 0.16 11.4 0.0 12 5.3 0.0 2.7 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.1 gi|307594920|ref|YP_003901237.1| - 0.3 9.4 0.0 7.4 4.8 0.0 2.4 3 0 0 3 3 3 0 AAA domain Fer4_2 PF12797.2 gi|307594920|ref|YP_003901237.1| - 0.35 10.8 12.0 0.043 13.7 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|307594920|ref|YP_003901237.1| - 0.47 10.8 7.5 2 8.8 5.2 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain PAP2 PF01569.16 gi|307594921|ref|YP_003901238.1| - 2e-19 69.5 4.4 2e-19 69.5 3.0 2.0 1 1 1 2 2 2 1 PAP2 superfamily DUF3353 PF11833.3 gi|307594921|ref|YP_003901238.1| - 1.8 8.0 7.5 3.9 6.9 0.0 3.1 3 1 1 4 4 4 0 Protein of unknown function (DUF3353) GCD14 PF08704.5 gi|307594922|ref|YP_003901239.1| - 2.4e-34 118.9 0.0 4.7e-34 117.9 0.0 1.4 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|307594922|ref|YP_003901239.1| - 5.1e-09 35.8 0.0 7.4e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307594922|ref|YP_003901239.1| - 6.8e-09 36.2 0.0 1.6e-08 35.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|307594922|ref|YP_003901239.1| - 3.5e-08 33.2 0.0 5.6e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|307594922|ref|YP_003901239.1| - 3.6e-06 27.0 0.0 2.5e-05 24.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|307594922|ref|YP_003901239.1| - 1.3e-05 24.6 0.0 2.4e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|307594922|ref|YP_003901239.1| - 0.00026 21.7 0.0 0.00047 20.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|307594922|ref|YP_003901239.1| - 0.00048 20.5 0.0 0.0008 19.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307594922|ref|YP_003901239.1| - 0.0014 18.9 0.0 0.0022 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|307594922|ref|YP_003901239.1| - 0.0032 17.0 0.0 0.0045 16.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_3 PF01596.12 gi|307594922|ref|YP_003901239.1| - 0.015 14.3 0.0 0.023 13.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_12 PF08242.7 gi|307594922|ref|YP_003901239.1| - 0.023 15.1 0.0 0.04 14.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Gcd10p PF04189.8 gi|307594922|ref|YP_003901239.1| - 0.048 12.7 0.0 0.063 12.3 0.0 1.2 1 0 0 1 1 1 0 Gcd10p family Methyltransf_23 PF13489.1 gi|307594922|ref|YP_003901239.1| - 0.076 12.7 0.0 0.27 10.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|307594922|ref|YP_003901239.1| - 0.099 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Spherulin4 PF12138.3 gi|307594922|ref|YP_003901239.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Spherulation-specific family 4 PepSY PF03413.14 gi|307594922|ref|YP_003901239.1| - 0.13 12.9 0.1 1.4 9.5 0.0 2.4 2 1 0 2 2 1 0 Peptidase propeptide and YPEB domain CxxCxxCC PF03692.10 gi|307594923|ref|YP_003901240.1| - 9.6e-10 38.8 0.2 1.6e-09 38.1 0.1 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Proteasome PF00227.21 gi|307594924|ref|YP_003901241.1| - 3.2e-61 205.9 0.0 5.1e-61 205.2 0.0 1.3 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|307594924|ref|YP_003901241.1| - 4.1e-10 38.7 0.1 4.1e-10 38.7 0.1 2.6 4 0 0 4 4 4 1 Proteasome subunit A N-terminal signature Methyltransf_11 PF08241.7 gi|307594925|ref|YP_003901242.1| - 2.4e-20 72.7 0.0 4.8e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307594925|ref|YP_003901242.1| - 3.5e-19 68.8 0.0 5.1e-19 68.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307594925|ref|YP_003901242.1| - 3.6e-15 56.2 0.0 5.7e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307594925|ref|YP_003901242.1| - 4.1e-13 49.5 0.0 8e-13 48.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|307594925|ref|YP_003901242.1| - 9e-13 48.2 0.0 2.1e-12 47.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|307594925|ref|YP_003901242.1| - 1e-11 44.8 0.0 1.8e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307594925|ref|YP_003901242.1| - 1.3e-11 45.0 0.0 2.3e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|307594925|ref|YP_003901242.1| - 9.6e-09 34.6 0.0 1.4e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Nitro_FeMo-Co PF02579.12 gi|307594925|ref|YP_003901242.1| - 1.7e-08 34.4 0.1 4.6e-08 33.0 0.0 1.7 2 0 0 2 2 1 1 Dinitrogenase iron-molybdenum cofactor NodS PF05401.6 gi|307594925|ref|YP_003901242.1| - 1.6e-07 30.9 0.0 2.4e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.9 gi|307594925|ref|YP_003901242.1| - 1.7e-07 30.7 0.0 2.6e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|307594925|ref|YP_003901242.1| - 7.1e-06 25.2 0.0 1e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.10 gi|307594925|ref|YP_003901242.1| - 9.8e-06 25.3 0.0 3.9e-05 23.3 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase TPMT PF05724.6 gi|307594925|ref|YP_003901242.1| - 4.4e-05 23.0 0.0 0.00033 20.1 0.0 2.0 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_2 PF00891.13 gi|307594925|ref|YP_003901242.1| - 0.00012 21.3 0.0 0.00018 20.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_32 PF13679.1 gi|307594925|ref|YP_003901242.1| - 0.0031 17.2 0.0 0.0048 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Pox_MCEL PF03291.11 gi|307594925|ref|YP_003901242.1| - 0.057 12.2 0.2 0.15 10.9 0.2 1.6 1 1 1 2 2 2 0 mRNA capping enzyme FmrO PF07091.6 gi|307594925|ref|YP_003901242.1| - 0.089 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) MetW PF07021.7 gi|307594925|ref|YP_003901242.1| - 0.099 12.0 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW ABM PF03992.11 gi|307594925|ref|YP_003901242.1| - 0.14 12.2 0.8 0.67 10.0 0.1 2.2 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase TehB PF03848.9 gi|307594925|ref|YP_003901242.1| - 0.14 11.2 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Peptidase_MA_2 PF13485.1 gi|307594926|ref|YP_003901243.1| - 0.013 15.5 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|307594926|ref|YP_003901243.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Hydrolase_3 PF08282.7 gi|307594927|ref|YP_003901244.1| - 4.5e-29 101.7 0.2 1.7e-20 73.6 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|307594927|ref|YP_003901244.1| - 6.6e-17 61.6 0.0 1.1e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|307594927|ref|YP_003901244.1| - 1.5e-06 28.5 0.0 0.00024 21.3 0.0 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|307594927|ref|YP_003901244.1| - 1.7e-06 27.1 0.0 2.2e-05 23.4 0.0 2.0 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase PF00702.21 gi|307594927|ref|YP_003901244.1| - 0.0093 16.3 2.2 1.3 9.4 0.1 3.0 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|307594927|ref|YP_003901244.1| - 0.026 14.2 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like TyeA PF09059.5 gi|307594928|ref|YP_003901245.1| - 0.0075 16.1 0.4 0.028 14.3 0.1 2.0 2 0 0 2 2 2 1 TyeA Radical_SAM PF04055.16 gi|307594929|ref|YP_003901246.1| - 2.7e-17 63.4 0.0 9.8e-17 61.6 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Pribosyltran PF00156.22 gi|307594930|ref|YP_003901247.1| - 4.5e-20 71.6 0.2 6.3e-20 71.1 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Caleosin PF05042.8 gi|307594930|ref|YP_003901247.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Caleosin related protein UPF0565 PF10561.4 gi|307594930|ref|YP_003901247.1| - 0.13 11.1 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0565 DUF3098 PF11297.3 gi|307594931|ref|YP_003901248.1| - 6.7 6.5 10.5 6.7 6.5 2.4 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3098) Band_7 PF01145.20 gi|307594932|ref|YP_003901249.1| - 2.1e-34 118.9 1.6 2.7e-34 118.6 1.1 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|307594932|ref|YP_003901249.1| - 0.00058 19.4 0.1 0.0039 16.7 0.1 2.0 1 1 0 1 1 1 1 SPFH domain-Band 7 family Glyco_hydro_80 PF13647.1 gi|307594932|ref|YP_003901249.1| - 0.079 12.2 0.1 0.11 11.7 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A DUF4179 PF13786.1 gi|307594932|ref|YP_003901249.1| - 0.21 11.8 1.5 26 5.1 0.2 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4179) NfeD PF01957.13 gi|307594933|ref|YP_003901250.1| - 2e-17 63.6 5.1 2e-17 63.6 3.5 3.4 4 0 0 4 4 4 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|307594933|ref|YP_003901250.1| - 3.5e-06 26.8 0.0 5.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|307594933|ref|YP_003901250.1| - 0.0089 14.8 0.0 0.014 14.2 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase SLAP PF03217.9 gi|307594933|ref|YP_003901250.1| - 0.14 12.3 0.7 0.92 9.7 0.2 2.4 2 1 0 2 2 2 0 Bacterial surface layer protein DUF1614 PF07758.6 gi|307594934|ref|YP_003901251.1| - 1.7e-34 119.0 14.5 2.6e-34 118.4 10.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) HAD_2 PF13419.1 gi|307594935|ref|YP_003901252.1| - 1.4e-30 106.7 0.0 1.7e-30 106.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|307594935|ref|YP_003901252.1| - 1.4e-14 55.0 0.1 1.1e-12 48.8 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|307594935|ref|YP_003901252.1| - 8.7e-11 42.3 0.0 1.2e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|307594935|ref|YP_003901252.1| - 1.6e-09 37.3 0.0 2.8e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|307594935|ref|YP_003901252.1| - 2.3e-06 27.3 0.0 0.0004 20.0 0.0 2.0 2 0 0 2 2 2 2 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.1 gi|307594935|ref|YP_003901252.1| - 3.7e-05 23.5 0.0 0.00039 20.2 0.0 2.5 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|307594935|ref|YP_003901252.1| - 0.00011 21.8 1.4 0.058 12.9 0.1 2.9 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|307594935|ref|YP_003901252.1| - 0.031 13.6 0.0 0.33 10.2 0.0 2.1 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) DUF2937 PF11157.3 gi|307594936|ref|YP_003901253.1| - 0.13 11.5 2.5 2.7 7.2 1.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2937) DnaB_2 PF07261.6 gi|307594936|ref|YP_003901253.1| - 0.66 9.6 2.7 3.7 7.2 0.1 3.2 3 1 1 4 4 4 0 Replication initiation and membrane attachment DUF2592 PF10766.4 gi|307594936|ref|YP_003901253.1| - 0.84 9.0 3.3 1.5 8.2 2.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2592) PHP_C PF13263.1 gi|307594937|ref|YP_003901254.1| - 3e-14 52.2 0.0 5.9e-14 51.3 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|307594937|ref|YP_003901254.1| - 6.1e-13 48.9 0.0 1.3e-12 47.8 0.0 1.6 1 1 0 1 1 1 1 PHP domain AMMECR1 PF01871.12 gi|307594938|ref|YP_003901255.1| - 1.8e-56 189.9 0.0 2.3e-56 189.6 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 ASFV_J13L PF05568.6 gi|307594939|ref|YP_003901256.1| - 0.0037 16.8 5.5 0.54 9.7 0.0 2.0 2 0 0 2 2 2 2 African swine fever virus J13L protein DUF4396 PF14342.1 gi|307594939|ref|YP_003901256.1| - 0.05 13.6 1.5 0.055 13.5 1.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) Oxidored_q5_N PF01059.12 gi|307594939|ref|YP_003901256.1| - 0.065 13.1 0.5 0.076 12.8 0.3 1.1 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus SPC25 PF06703.6 gi|307594939|ref|YP_003901256.1| - 0.088 12.3 2.8 0.18 11.3 0.7 1.8 1 1 1 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Spo7 PF03907.8 gi|307594939|ref|YP_003901256.1| - 0.092 12.3 2.6 0.1 12.1 1.8 1.0 1 0 0 1 1 1 0 Spo7-like protein DctQ PF04290.7 gi|307594939|ref|YP_003901256.1| - 0.15 11.8 2.3 0.17 11.6 1.6 1.1 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF4234 PF14018.1 gi|307594939|ref|YP_003901256.1| - 0.35 10.6 3.7 0.44 10.3 2.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4234) Otopetrin PF03189.8 gi|307594939|ref|YP_003901256.1| - 0.39 9.6 3.1 0.43 9.5 2.1 1.0 1 0 0 1 1 1 0 Otopetrin ATP1G1_PLM_MAT8 PF02038.11 gi|307594939|ref|YP_003901256.1| - 0.44 9.5 6.8 8.9 5.4 2.6 2.3 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Tetraspannin PF00335.15 gi|307594939|ref|YP_003901256.1| - 0.53 9.5 6.0 0.6 9.3 4.1 1.1 1 0 0 1 1 1 0 Tetraspanin family Oxidored_q1_N PF00662.15 gi|307594939|ref|YP_003901256.1| - 0.58 9.7 7.5 4.2 7.0 0.2 2.1 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3955 PF13127.1 gi|307594939|ref|YP_003901256.1| - 0.63 9.6 5.5 3.8 7.1 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) 7tm_7 PF08395.7 gi|307594939|ref|YP_003901256.1| - 1.1 8.2 4.6 1.2 8.1 3.2 1.0 1 0 0 1 1 1 0 7tm Chemosensory receptor SecG PF03840.9 gi|307594939|ref|YP_003901256.1| - 1.7 8.3 8.4 4 7.2 2.4 2.2 2 0 0 2 2 2 0 Preprotein translocase SecG subunit Sec62 PF03839.11 gi|307594939|ref|YP_003901256.1| - 2.8 7.2 5.0 3.1 7.1 3.5 1.0 1 0 0 1 1 1 0 Translocation protein Sec62 CbiN PF02553.10 gi|307594939|ref|YP_003901256.1| - 2.9 7.9 4.7 3.5 7.7 1.0 2.0 1 1 1 2 2 2 0 Cobalt transport protein component CbiN Cob_adeno_trans PF01923.13 gi|307594940|ref|YP_003901257.1| - 8.6e-10 38.6 0.0 2.7e-09 37.0 0.0 1.7 1 1 0 1 1 1 1 Cobalamin adenosyltransferase EntA_Immun PF08951.5 gi|307594940|ref|YP_003901257.1| - 0.13 12.3 0.5 1.5 8.9 0.9 2.1 2 0 0 2 2 2 0 Enterocin A Immunity LIM PF00412.17 gi|307594941|ref|YP_003901258.1| - 0.0045 17.0 0.6 0.0045 17.0 0.4 2.0 2 1 0 2 2 2 1 LIM domain zf-FPG_IleRS PF06827.9 gi|307594941|ref|YP_003901258.1| - 0.04 13.5 0.2 1.3 8.7 0.0 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Sgf11 PF08209.6 gi|307594941|ref|YP_003901258.1| - 0.26 10.6 0.1 0.26 10.6 0.1 2.6 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-C2HC_2 PF13913.1 gi|307594941|ref|YP_003901258.1| - 0.82 9.4 0.1 0.82 9.4 0.0 3.5 4 0 0 4 4 4 0 zinc-finger of a C2HC-type zf-UDP PF14569.1 gi|307594941|ref|YP_003901258.1| - 2.1 8.1 4.8 3.7 7.3 3.3 1.5 1 1 0 1 1 1 0 Zinc-binding RING-finger zf-C3HC4_3 PF13920.1 gi|307594941|ref|YP_003901258.1| - 2.2 8.0 7.9 0.98 9.1 1.8 2.4 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF4428 PF14471.1 gi|307594941|ref|YP_003901258.1| - 4.1 7.2 6.1 0.63 9.8 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-AN1 PF01428.11 gi|307594941|ref|YP_003901258.1| - 9.1 6.2 8.1 41 4.1 0.1 3.1 2 1 1 3 3 3 0 AN1-like Zinc finger Pyr_redox_2 PF07992.9 gi|307594942|ref|YP_003901259.1| - 9.5e-10 38.6 0.0 2.4e-09 37.3 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|307594942|ref|YP_003901259.1| - 5.4e-08 32.0 0.3 1e-07 31.1 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|307594942|ref|YP_003901259.1| - 3.4e-07 30.5 0.1 0.0024 17.9 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|307594942|ref|YP_003901259.1| - 2.9e-06 27.5 2.7 0.0039 17.5 0.6 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|307594942|ref|YP_003901259.1| - 7.2e-06 25.2 0.7 1.5e-05 24.2 0.5 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|307594942|ref|YP_003901259.1| - 1.1e-05 24.7 0.9 1.1e-05 24.7 0.6 1.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|307594942|ref|YP_003901259.1| - 2.5e-05 24.2 0.9 5.6e-05 23.0 0.6 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|307594942|ref|YP_003901259.1| - 3.9e-05 22.7 0.5 5.8e-05 22.1 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.10 gi|307594942|ref|YP_003901259.1| - 5.3e-05 23.1 0.1 0.0001 22.3 0.0 1.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Lycopene_cycl PF05834.7 gi|307594942|ref|YP_003901259.1| - 0.00056 18.9 0.2 0.00087 18.3 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|307594942|ref|YP_003901259.1| - 0.0023 17.1 0.5 0.0035 16.4 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|307594942|ref|YP_003901259.1| - 0.0092 14.8 0.2 0.017 14.0 0.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A CPSase_L_chain PF00289.17 gi|307594942|ref|YP_003901259.1| - 0.028 14.4 0.0 1.9 8.6 0.0 2.3 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain HI0933_like PF03486.9 gi|307594942|ref|YP_003901259.1| - 0.046 12.1 0.5 0.068 11.6 0.3 1.2 1 0 0 1 1 1 0 HI0933-like protein ThiF PF00899.16 gi|307594942|ref|YP_003901259.1| - 1.4 8.7 3.9 26 4.6 0.0 2.4 2 0 0 2 2 2 0 ThiF family DAO PF01266.19 gi|307594943|ref|YP_003901260.1| - 2.4e-76 256.9 0.1 2.8e-76 256.7 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|307594943|ref|YP_003901260.1| - 1.6e-10 40.4 1.1 6.5e-10 38.4 0.7 1.8 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|307594943|ref|YP_003901260.1| - 5.8e-09 35.8 0.5 1.9e-08 34.2 0.3 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|307594943|ref|YP_003901260.1| - 1.4e-08 35.0 0.6 6.9e-07 29.5 0.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|307594943|ref|YP_003901260.1| - 3.4e-07 29.6 0.4 4.2e-06 26.0 0.3 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|307594943|ref|YP_003901260.1| - 3.6e-05 23.7 0.0 0.0016 18.3 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|307594943|ref|YP_003901260.1| - 0.0001 20.9 0.2 0.017 13.5 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|307594943|ref|YP_003901260.1| - 0.00048 19.2 0.5 0.0008 18.5 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|307594943|ref|YP_003901260.1| - 0.0021 18.4 1.3 0.011 16.0 0.5 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|307594943|ref|YP_003901260.1| - 0.0024 16.8 1.7 0.036 12.9 0.2 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|307594943|ref|YP_003901260.1| - 0.0025 17.4 0.1 0.0036 16.9 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|307594943|ref|YP_003901260.1| - 0.0049 16.0 0.0 0.01 14.9 0.0 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase ThiF PF00899.16 gi|307594943|ref|YP_003901260.1| - 0.014 15.2 0.1 0.025 14.3 0.1 1.4 1 0 0 1 1 1 0 ThiF family Amino_oxidase PF01593.19 gi|307594943|ref|YP_003901260.1| - 0.015 14.3 0.1 0.071 12.1 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|307594943|ref|YP_003901260.1| - 0.023 14.4 0.3 0.51 10.0 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding ApbA PF02558.11 gi|307594943|ref|YP_003901260.1| - 0.028 13.8 0.1 0.046 13.1 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.7 gi|307594943|ref|YP_003901260.1| - 0.037 12.9 0.1 0.069 12.0 0.1 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.9 gi|307594943|ref|YP_003901260.1| - 0.058 12.7 1.5 0.11 11.8 1.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|307594943|ref|YP_003901260.1| - 0.068 12.8 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|307594943|ref|YP_003901260.1| - 0.15 12.0 0.1 0.27 11.2 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain HSP20 PF00011.16 gi|307594944|ref|YP_003901261.1| - 3.3e-10 39.7 0.0 4.3e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PhoU PF01895.14 gi|307594945|ref|YP_003901262.1| - 8e-19 67.8 7.3 1e-15 57.9 0.2 2.6 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|307594945|ref|YP_003901262.1| - 2.4e-09 36.6 0.1 1.6e-08 34.0 0.1 2.3 2 0 0 2 2 2 1 Antidote-toxin recognition MazE ATP-synt_E_2 PF08112.6 gi|307594945|ref|YP_003901262.1| - 0.014 15.4 0.4 0.051 13.6 0.3 1.9 1 0 0 1 1 1 0 ATP synthase epsilon subunit MTS PF05175.9 gi|307594946|ref|YP_003901263.1| - 2.3e-11 43.3 0.0 2.6e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|307594946|ref|YP_003901263.1| - 1.5e-09 37.8 0.0 1.9e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|307594946|ref|YP_003901263.1| - 2.5e-06 26.8 0.3 3.3e-06 26.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|307594946|ref|YP_003901263.1| - 0.00022 20.6 0.0 0.00031 20.1 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|307594946|ref|YP_003901263.1| - 0.00038 20.0 0.0 0.00044 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|307594946|ref|YP_003901263.1| - 0.00072 19.1 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|307594946|ref|YP_003901263.1| - 0.003 17.1 0.0 0.004 16.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|307594946|ref|YP_003901263.1| - 0.019 15.5 0.0 0.024 15.2 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.11 gi|307594946|ref|YP_003901263.1| - 0.021 13.9 0.0 0.029 13.4 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_32 PF13679.1 gi|307594946|ref|YP_003901263.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain HTH_5 PF01022.15 gi|307594947|ref|YP_003901264.1| - 2.6e-05 23.7 0.1 5.7e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|307594947|ref|YP_003901264.1| - 5.7e-05 23.3 0.0 0.00011 22.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|307594947|ref|YP_003901264.1| - 9.6e-05 22.1 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|307594947|ref|YP_003901264.1| - 0.00078 19.1 0.1 0.0016 18.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|307594947|ref|YP_003901264.1| - 0.021 14.4 0.1 0.021 14.4 0.1 2.0 2 0 0 2 2 2 0 HTH domain HTH_34 PF13601.1 gi|307594947|ref|YP_003901264.1| - 0.03 14.3 0.1 0.085 12.8 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|307594947|ref|YP_003901264.1| - 0.03 13.8 0.2 0.064 12.7 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HemN_C PF06969.11 gi|307594947|ref|YP_003901264.1| - 0.039 14.0 0.0 0.087 12.8 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain MarR PF01047.17 gi|307594947|ref|YP_003901264.1| - 0.065 12.9 0.1 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 MarR family TMEM206 PF15122.1 gi|307594947|ref|YP_003901264.1| - 0.16 10.8 0.0 0.28 10.0 0.0 1.4 1 0 0 1 1 1 0 TMEM206 protein family Ribosomal_S25 PF03297.10 gi|307594949|ref|YP_003901266.1| - 8.8e-11 41.7 1.7 1.1e-10 41.5 1.2 1.1 1 0 0 1 1 1 1 S25 ribosomal protein TBP PF00352.16 gi|307594950|ref|YP_003901267.1| - 2.4e-70 231.9 0.0 5.5e-34 115.3 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|307594950|ref|YP_003901267.1| - 0.00053 19.9 0.0 0.89 9.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Fer4_3 PF12798.2 gi|307594951|ref|YP_003901268.1| - 1 10.0 2.9 1.6 9.4 2.0 1.3 1 0 0 1 1 1 0 4Fe-4S binding domain Hjc PF01870.13 gi|307594952|ref|YP_003901269.1| - 2.6e-25 87.8 0.0 3.2e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|307594952|ref|YP_003901269.1| - 0.00021 21.5 0.0 0.00028 21.1 0.0 1.3 1 0 0 1 1 1 1 Nuclease-related domain RE_AccI PF09545.5 gi|307594953|ref|YP_003901270.1| - 0.025 13.1 0.1 0.027 13.0 0.1 1.0 1 0 0 1 1 1 0 AccI restriction endonuclease POTRA_2 PF08479.6 gi|307594953|ref|YP_003901270.1| - 0.13 11.9 0.0 0.29 10.8 0.0 1.6 1 1 1 2 2 2 0 POTRA domain, ShlB-type Lactamase_B_3 PF13483.1 gi|307594954|ref|YP_003901271.1| - 1.1e-27 96.7 0.1 1.3e-27 96.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|307594954|ref|YP_003901271.1| - 5.3e-21 75.0 0.0 6.6e-21 74.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|307594954|ref|YP_003901271.1| - 1.2e-10 41.4 0.2 1.9e-10 40.7 0.1 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DAO PF01266.19 gi|307594955|ref|YP_003901272.1| - 5.4e-14 51.8 2.7 7.5e-06 25.0 0.4 3.0 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|307594955|ref|YP_003901272.1| - 8.7e-12 44.7 0.0 7.8e-05 21.8 0.0 3.2 3 0 0 3 3 3 2 FAD binding domain FAD_binding_2 PF00890.19 gi|307594955|ref|YP_003901272.1| - 3e-10 39.5 0.1 3.7e-05 22.7 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|307594955|ref|YP_003901272.1| - 5.3e-10 38.9 0.7 6.1e-05 22.2 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|307594955|ref|YP_003901272.1| - 3.9e-09 35.6 0.0 0.00031 19.5 0.0 2.9 2 1 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|307594955|ref|YP_003901272.1| - 7.5e-07 28.4 0.4 2.6e-06 26.7 0.3 2.0 1 1 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|307594955|ref|YP_003901272.1| - 5.7e-06 25.4 0.3 8.3e-06 24.9 0.2 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|307594955|ref|YP_003901272.1| - 0.00012 21.9 2.3 0.00013 21.8 0.1 2.2 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|307594955|ref|YP_003901272.1| - 0.00029 19.4 0.1 0.00049 18.6 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|307594955|ref|YP_003901272.1| - 0.00041 20.2 0.4 0.00073 19.4 0.3 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|307594955|ref|YP_003901272.1| - 0.0012 17.8 0.2 0.02 13.8 0.0 2.5 3 0 0 3 3 3 1 Lycopene cyclase protein ApbA PF02558.11 gi|307594955|ref|YP_003901272.1| - 0.0028 17.0 0.0 0.0046 16.4 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|307594955|ref|YP_003901272.1| - 0.004 16.8 0.2 0.0068 16.0 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|307594955|ref|YP_003901272.1| - 0.025 14.4 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 ThiF family Pyr_redox PF00070.22 gi|307594955|ref|YP_003901272.1| - 0.077 13.4 0.2 0.3 11.5 0.1 2.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|307594955|ref|YP_003901272.1| - 0.1 12.6 0.3 0.8 9.7 0.2 2.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IF-2B PF01008.12 gi|307594956|ref|YP_003901273.1| - 5.9e-78 261.6 0.0 7.2e-78 261.4 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF4398 PF14346.1 gi|307594956|ref|YP_003901273.1| - 0.03 14.3 1.2 0.05 13.6 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) DUF1771 PF08590.5 gi|307594956|ref|YP_003901273.1| - 0.071 13.1 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) Peptidase_M32 PF02074.10 gi|307594957|ref|YP_003901274.1| - 3.7e-166 553.6 0.8 4.1e-166 553.4 0.5 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase 4HB_MCP_1 PF12729.2 gi|307594957|ref|YP_003901274.1| - 0.028 13.7 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Mrr_cat PF04471.7 gi|307594958|ref|YP_003901275.1| - 3.8e-08 33.1 0.2 6.1e-08 32.4 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.12 gi|307594958|ref|YP_003901275.1| - 0.00014 21.7 0.1 0.00024 20.9 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 DUF91 PF01939.11 gi|307594958|ref|YP_003901275.1| - 0.00014 21.0 0.3 0.0002 20.6 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF4143 PF13635.1 gi|307594958|ref|YP_003901275.1| - 0.0007 19.7 0.1 0.0013 18.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) DUF234 PF03008.9 gi|307594958|ref|YP_003901275.1| - 0.031 14.4 0.0 0.053 13.6 0.0 1.4 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function MCE PF02470.15 gi|307594958|ref|YP_003901275.1| - 0.069 13.1 1.9 0.15 12.1 1.3 1.4 1 1 0 1 1 1 0 mce related protein RNase_PH PF01138.16 gi|307594959|ref|YP_003901276.1| - 2.3e-32 112.0 0.0 3.6e-32 111.4 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|307594959|ref|YP_003901276.1| - 4.9e-07 29.5 0.3 3.9e-06 26.6 0.0 2.2 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|307594960|ref|YP_003901277.1| - 3.2e-37 127.7 0.0 4.7e-37 127.2 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|307594960|ref|YP_003901277.1| - 7.4e-15 54.6 0.0 1.4e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Acetyltransf_1 PF00583.19 gi|307594961|ref|YP_003901278.1| - 4.1e-17 61.9 0.1 5.9e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|307594961|ref|YP_003901278.1| - 3.4e-15 56.3 0.0 4e-15 56.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|307594961|ref|YP_003901278.1| - 1.8e-13 50.4 0.0 2.5e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|307594961|ref|YP_003901278.1| - 1e-11 44.9 0.0 1.1e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|307594961|ref|YP_003901278.1| - 5.1e-11 42.5 0.1 1.2e-10 41.3 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|307594961|ref|YP_003901278.1| - 7e-08 32.1 0.0 1.2e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|307594961|ref|YP_003901278.1| - 7.3e-08 32.6 0.0 9.5e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|307594961|ref|YP_003901278.1| - 4.1e-06 26.7 0.0 6.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|307594961|ref|YP_003901278.1| - 0.0037 17.1 0.0 0.0058 16.4 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Mec-17 PF05301.6 gi|307594961|ref|YP_003901278.1| - 0.0055 16.6 0.0 0.0094 15.8 0.0 1.5 1 1 0 1 1 1 1 Touch receptor neuron protein Mec-17 Acetyltransf_6 PF13480.1 gi|307594961|ref|YP_003901278.1| - 0.013 15.4 0.4 0.044 13.7 0.3 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|307594961|ref|YP_003901278.1| - 0.077 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AstA PF04958.7 gi|307594961|ref|YP_003901278.1| - 0.099 11.0 0.3 0.66 8.3 0.0 2.0 1 1 1 2 2 2 0 Arginine N-succinyltransferase beta subunit Glyco_tranf_2_3 PF13641.1 gi|307594963|ref|YP_003901280.1| - 6.6e-30 104.6 0.0 8.3e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|307594963|ref|YP_003901280.1| - 3.8e-19 69.0 0.0 6.6e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|307594963|ref|YP_003901280.1| - 4.3e-18 65.7 3.5 8.1e-18 64.8 2.5 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|307594963|ref|YP_003901280.1| - 4e-06 26.1 0.1 6.4e-06 25.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|307594963|ref|YP_003901280.1| - 0.00028 20.2 0.0 0.00048 19.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.10 gi|307594963|ref|YP_003901280.1| - 0.014 13.7 0.0 0.014 13.7 0.0 2.0 2 0 0 2 2 2 0 Chitin synthase RloB PF13707.1 gi|307594963|ref|YP_003901280.1| - 0.044 13.4 0.1 0.068 12.8 0.1 1.3 1 0 0 1 1 1 0 RloB-like protein TraL PF07178.6 gi|307594963|ref|YP_003901280.1| - 5.8 7.0 7.9 3.2 7.8 2.9 2.5 2 1 0 2 2 2 0 TraL protein AAA_21 PF13304.1 gi|307594964|ref|YP_003901281.1| - 2.3e-14 54.0 0.0 2.9e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|307594964|ref|YP_003901281.1| - 4.5e-08 33.6 0.0 5.6e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|307594964|ref|YP_003901281.1| - 5.4e-06 25.8 0.1 1e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|307594964|ref|YP_003901281.1| - 2.5e-05 23.6 0.0 9.3e-05 21.7 0.0 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|307594964|ref|YP_003901281.1| - 4.7e-05 23.5 0.0 0.037 14.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|307594964|ref|YP_003901281.1| - 0.00017 21.1 0.0 0.00032 20.2 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain DUF2813 PF11398.3 gi|307594964|ref|YP_003901281.1| - 0.00029 20.0 0.5 0.00055 19.1 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) FtsK_SpoIIIE PF01580.13 gi|307594964|ref|YP_003901281.1| - 0.0014 18.1 0.1 0.0027 17.2 0.1 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|307594964|ref|YP_003901281.1| - 0.0026 18.0 0.0 0.0049 17.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_25 PF13481.1 gi|307594964|ref|YP_003901281.1| - 0.013 14.9 0.1 0.028 13.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|307594964|ref|YP_003901281.1| - 0.02 14.5 0.3 0.052 13.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|307594964|ref|YP_003901281.1| - 0.027 15.2 0.0 0.065 14.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|307594964|ref|YP_003901281.1| - 0.034 14.1 0.0 0.057 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|307594964|ref|YP_003901281.1| - 0.04 13.4 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|307594964|ref|YP_003901281.1| - 0.051 13.2 0.0 0.095 12.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|307594964|ref|YP_003901281.1| - 0.054 13.0 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|307594964|ref|YP_003901281.1| - 0.076 13.5 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|307594964|ref|YP_003901281.1| - 0.093 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TrwB_AAD_bind PF10412.4 gi|307594964|ref|YP_003901281.1| - 0.12 10.9 0.0 0.2 10.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_15 PF13175.1 gi|307594964|ref|YP_003901281.1| - 0.13 11.2 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.9 gi|307594964|ref|YP_003901281.1| - 0.14 11.9 0.0 0.71 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|307594964|ref|YP_003901281.1| - 0.18 10.9 0.1 0.32 10.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 HIT PF01230.18 gi|307594966|ref|YP_003901283.1| - 2.3e-09 37.6 0.0 3.4e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|307594966|ref|YP_003901283.1| - 4.2e-08 32.8 0.3 1.6e-07 30.9 0.2 1.8 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|307594966|ref|YP_003901283.1| - 3.7e-07 30.3 0.0 5.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding TRSP PF12500.3 gi|307594967|ref|YP_003901284.1| - 0.038 13.4 0.1 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 TRSP domain C terminus to PRTase_2 ALS_ss_C PF10369.4 gi|307594967|ref|YP_003901284.1| - 0.072 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Small subunit of acetolactate synthase Hist_deacetyl PF00850.14 gi|307594968|ref|YP_003901285.1| - 9.4e-75 251.7 0.0 1.1e-74 251.5 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain RNase_Zc3h12a PF11977.3 gi|307594968|ref|YP_003901285.1| - 0.091 12.5 0.0 0.9 9.3 0.0 2.0 2 0 0 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain DNA_RNApol_7kD PF03604.8 gi|307594969|ref|YP_003901286.1| - 2.4e-05 23.6 3.3 5.6e-05 22.5 2.3 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|307594969|ref|YP_003901286.1| - 0.00018 21.4 1.3 0.0005 20.0 0.3 1.8 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|307594969|ref|YP_003901286.1| - 0.001 18.8 0.6 0.12 12.2 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|307594969|ref|YP_003901286.1| - 0.0029 16.7 0.5 0.1 11.8 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-C2H2 PF00096.21 gi|307594969|ref|YP_003901286.1| - 0.0035 17.6 1.4 0.86 10.0 0.0 2.4 2 1 0 2 2 2 1 Zinc finger, C2H2 type zf-C2HC5 PF06221.8 gi|307594969|ref|YP_003901286.1| - 0.0078 15.9 0.1 0.0092 15.7 0.1 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type zf-CSL PF05207.8 gi|307594969|ref|YP_003901286.1| - 0.011 15.2 0.8 0.028 13.9 0.6 1.7 1 1 0 1 1 1 0 CSL zinc finger zf-H2C2_2 PF13465.1 gi|307594969|ref|YP_003901286.1| - 0.012 15.8 0.6 0.99 9.8 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain HypA PF01155.14 gi|307594969|ref|YP_003901286.1| - 0.012 15.3 0.1 0.012 15.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|307594969|ref|YP_003901286.1| - 0.012 15.0 2.4 0.19 11.2 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|307594969|ref|YP_003901286.1| - 0.015 15.1 0.1 0.019 14.8 0.1 1.2 1 0 0 1 1 1 0 IBR domain Zn-ribbon_8 PF09723.5 gi|307594969|ref|YP_003901286.1| - 0.02 14.8 0.7 0.037 13.9 0.5 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2_4 PF13894.1 gi|307594969|ref|YP_003901286.1| - 0.022 15.0 0.4 2.4 8.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.2 gi|307594969|ref|YP_003901286.1| - 0.026 14.3 0.2 0.084 12.7 0.1 1.8 1 1 0 1 1 1 0 Double zinc ribbon TerY-C PF15616.1 gi|307594969|ref|YP_003901286.1| - 0.03 14.2 0.1 0.034 14.0 0.0 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain DUF2072 PF09845.4 gi|307594969|ref|YP_003901286.1| - 0.031 14.1 0.2 0.031 14.1 0.1 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) TFIIS_C PF01096.13 gi|307594969|ref|YP_003901286.1| - 0.034 13.7 0.7 5.7 6.6 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Elf1 PF05129.8 gi|307594969|ref|YP_003901286.1| - 0.038 13.6 0.3 0.49 10.1 0.0 1.9 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-RING_3 PF14369.1 gi|307594969|ref|YP_003901286.1| - 0.038 13.9 0.3 0.051 13.5 0.2 1.3 1 0 0 1 1 1 0 zinc-finger Cys_rich_CPXG PF14255.1 gi|307594969|ref|YP_003901286.1| - 0.083 12.7 1.0 0.085 12.6 0.1 1.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG Ribosomal_L37e PF01907.14 gi|307594969|ref|YP_003901286.1| - 0.083 12.6 1.7 0.33 10.7 1.2 1.8 1 1 0 1 1 1 0 Ribosomal protein L37e zf-UBP PF02148.14 gi|307594969|ref|YP_003901286.1| - 0.086 12.9 0.4 0.16 12.1 0.3 1.7 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein FYVE PF01363.16 gi|307594969|ref|YP_003901286.1| - 0.1 12.5 0.5 0.12 12.3 0.3 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-CHCC PF10276.4 gi|307594969|ref|YP_003901286.1| - 0.12 12.2 1.6 0.2 11.5 0.1 1.9 2 0 0 2 2 2 0 Zinc-finger domain RNHCP PF12647.2 gi|307594969|ref|YP_003901286.1| - 0.12 12.2 0.1 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain DUF164 PF02591.10 gi|307594969|ref|YP_003901286.1| - 0.16 11.8 1.1 14 5.5 0.1 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain COX5B PF01215.14 gi|307594969|ref|YP_003901286.1| - 0.17 11.5 0.3 0.26 10.9 0.0 1.5 1 1 1 2 2 2 0 Cytochrome c oxidase subunit Vb Sgf11 PF08209.6 gi|307594969|ref|YP_003901286.1| - 0.28 10.5 2.3 5.8 6.3 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) TF_Zn_Ribbon PF08271.7 gi|307594969|ref|YP_003901286.1| - 0.34 10.2 3.5 1.2 8.5 2.4 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|307594969|ref|YP_003901286.1| - 1.3 8.7 4.7 9.8 5.9 1.7 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 CTP_transf_2 PF01467.21 gi|307594970|ref|YP_003901287.1| - 1.4e-11 44.7 0.0 2e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase ATP-sulfurylase PF01747.12 gi|307594970|ref|YP_003901287.1| - 0.018 14.4 0.0 0.41 9.9 0.0 2.2 2 0 0 2 2 2 0 ATP-sulfurylase Ank PF00023.25 gi|307594970|ref|YP_003901287.1| - 0.086 12.6 0.0 4 7.4 0.0 2.5 2 0 0 2 2 2 0 Ankyrin repeat Glu_cys_ligase PF04262.9 gi|307594970|ref|YP_003901287.1| - 0.13 10.7 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 Glutamate-cysteine ligase 4HBT PF03061.17 gi|307594971|ref|YP_003901288.1| - 2.4e-31 107.7 1.2 8.3e-15 54.6 0.2 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|307594971|ref|YP_003901288.1| - 4.3e-07 30.4 0.0 2.9e-05 24.5 0.0 2.2 1 1 0 2 2 2 1 Thioesterase-like superfamily KH_1 PF00013.24 gi|307594972|ref|YP_003901289.1| - 3.6e-08 32.9 0.3 1.7e-07 30.8 0.1 2.2 1 1 1 2 2 2 1 KH domain KH_2 PF07650.12 gi|307594972|ref|YP_003901289.1| - 0.00049 19.6 0.0 0.0013 18.2 0.0 1.8 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|307594972|ref|YP_003901289.1| - 0.0019 18.2 0.0 0.0043 17.1 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain KH_3 PF13014.1 gi|307594972|ref|YP_003901289.1| - 0.0053 16.3 0.1 0.025 14.2 0.0 2.2 1 1 1 2 2 2 1 KH domain KH_4 PF13083.1 gi|307594972|ref|YP_003901289.1| - 0.037 13.6 0.0 0.1 12.2 0.0 1.8 1 0 0 1 1 1 0 KH domain SBDS PF01172.13 gi|307594973|ref|YP_003901290.1| - 8.9e-25 86.3 0.0 1.5e-24 85.6 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|307594973|ref|YP_003901290.1| - 3.8e-21 75.0 1.0 5.4e-21 74.5 0.7 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF1949 PF09186.6 gi|307594973|ref|YP_003901290.1| - 0.0026 17.3 0.2 0.014 15.0 0.0 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|307594973|ref|YP_003901290.1| - 0.025 14.4 0.0 0.051 13.4 0.0 1.5 1 0 0 1 1 1 0 Elongation factor G C-terminus ABC2_membrane PF01061.19 gi|307594974|ref|YP_003901291.1| - 0.0063 15.7 29.0 0.004 16.3 19.0 1.5 1 1 0 1 1 1 1 ABC-2 type transporter YbjM PF11045.3 gi|307594974|ref|YP_003901291.1| - 0.11 12.2 0.3 0.11 12.2 0.2 2.9 2 1 1 3 3 3 0 Putative inner membrane protein of Enterobacteriaceae DUF2839 PF10999.3 gi|307594974|ref|YP_003901291.1| - 4.2 7.4 5.7 4.9 7.2 0.7 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) ABC_tran PF00005.22 gi|307594975|ref|YP_003901292.1| - 2.1e-26 92.8 0.0 2.8e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307594975|ref|YP_003901292.1| - 6.1e-13 49.3 0.0 3.1e-07 30.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|307594975|ref|YP_003901292.1| - 0.00084 18.8 0.0 0.0016 17.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|307594975|ref|YP_003901292.1| - 0.001 18.1 0.0 0.74 8.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|307594975|ref|YP_003901292.1| - 0.0074 16.4 0.0 0.032 14.4 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|307594975|ref|YP_003901292.1| - 0.01 15.4 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|307594975|ref|YP_003901292.1| - 0.014 14.6 0.0 3.9 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|307594975|ref|YP_003901292.1| - 0.015 15.5 0.0 0.024 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|307594975|ref|YP_003901292.1| - 0.029 14.3 0.0 0.056 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|307594975|ref|YP_003901292.1| - 0.043 13.9 0.0 0.084 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|307594975|ref|YP_003901292.1| - 0.05 12.7 0.0 0.077 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|307594975|ref|YP_003901292.1| - 0.057 14.2 0.0 0.13 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|307594975|ref|YP_003901292.1| - 0.062 13.2 0.0 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|307594975|ref|YP_003901292.1| - 0.064 13.1 0.0 0.11 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|307594975|ref|YP_003901292.1| - 0.09 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|307594975|ref|YP_003901292.1| - 0.1 12.5 0.0 0.44 10.4 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.17 gi|307594975|ref|YP_003901292.1| - 0.12 12.6 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA helicase cobW PF02492.14 gi|307594975|ref|YP_003901292.1| - 0.17 11.2 0.0 0.3 10.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.1 gi|307594975|ref|YP_003901292.1| - 0.24 9.8 0.0 0.36 9.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain S4 PF01479.20 gi|307594976|ref|YP_003901293.1| - 1.6e-16 59.4 0.3 3e-16 58.5 0.2 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|307594976|ref|YP_003901293.1| - 0.0046 17.3 0.7 0.0091 16.3 0.5 1.6 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Macro_2 PF14519.1 gi|307594976|ref|YP_003901293.1| - 0.1 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Macro-like domain RmuC PF02646.11 gi|307594977|ref|YP_003901294.1| - 0.0012 17.7 0.3 0.0032 16.3 0.2 1.7 1 1 0 1 1 1 1 RmuC family DUF342 PF03961.8 gi|307594977|ref|YP_003901294.1| - 0.0036 15.7 1.2 0.0045 15.4 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF342) Vac_Fusion PF02346.11 gi|307594977|ref|YP_003901294.1| - 0.0053 16.1 1.6 0.024 14.0 0.3 2.4 1 1 1 2 2 2 1 Chordopoxvirus fusion protein Syntaxin PF00804.20 gi|307594977|ref|YP_003901294.1| - 0.0061 16.6 1.2 0.013 15.6 0.8 1.6 1 0 0 1 1 1 1 Syntaxin DUF2746 PF10874.3 gi|307594977|ref|YP_003901294.1| - 0.013 15.6 6.4 0.21 11.8 0.0 3.5 1 1 0 2 2 2 0 Protein of unknown function (DUF2746) Apolipoprotein PF01442.13 gi|307594977|ref|YP_003901294.1| - 0.015 14.8 0.6 0.025 14.0 0.1 1.6 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain V_ATPase_I PF01496.14 gi|307594977|ref|YP_003901294.1| - 0.018 12.9 0.7 0.022 12.6 0.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IFT57 PF10498.4 gi|307594977|ref|YP_003901294.1| - 0.019 13.7 5.1 0.062 12.0 0.5 2.0 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Hemagglutinin PF00509.13 gi|307594977|ref|YP_003901294.1| - 0.028 12.5 2.4 0.12 10.4 1.5 1.8 1 1 1 2 2 2 0 Haemagglutinin AF0941-like PF14591.1 gi|307594977|ref|YP_003901294.1| - 0.033 14.2 5.6 0.63 10.0 0.7 2.2 2 0 0 2 2 2 0 AF0941-like BAR PF03114.13 gi|307594977|ref|YP_003901294.1| - 0.035 13.5 4.2 0.4 10.1 0.6 2.2 1 1 1 2 2 2 0 BAR domain APG17 PF04108.7 gi|307594977|ref|YP_003901294.1| - 0.038 12.7 5.5 0.015 14.1 1.7 1.7 1 1 1 2 2 2 0 Autophagy protein Apg17 Baculo_PEP_C PF04513.7 gi|307594977|ref|YP_003901294.1| - 0.045 13.5 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ISG65-75 PF11727.3 gi|307594977|ref|YP_003901294.1| - 0.058 12.4 0.8 0.3 10.0 0.1 1.9 2 0 0 2 2 2 0 Invariant surface glycoprotein DUF3670 PF12419.3 gi|307594977|ref|YP_003901294.1| - 0.071 12.5 0.4 8.3 5.8 0.2 2.3 1 1 1 2 2 2 0 SNF2 Helicase protein Occludin_ELL PF07303.8 gi|307594977|ref|YP_003901294.1| - 0.081 13.6 6.4 0.2 12.3 2.2 2.8 2 1 0 2 2 1 0 Occludin homology domain Seryl_tRNA_N PF02403.17 gi|307594977|ref|YP_003901294.1| - 0.11 12.5 2.0 0.32 11.0 0.1 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Prominin PF05478.6 gi|307594977|ref|YP_003901294.1| - 0.13 9.7 0.1 0.19 9.1 0.0 1.2 1 0 0 1 1 1 0 Prominin MetJ PF01340.15 gi|307594977|ref|YP_003901294.1| - 0.13 11.9 0.4 2 8.2 0.1 2.3 1 1 1 2 2 2 0 Met Apo-repressor, MetJ TcdB_N PF12918.2 gi|307594977|ref|YP_003901294.1| - 0.14 12.2 0.5 5.8 7.0 0.1 2.5 1 1 1 2 2 2 0 TcdB toxin N-terminal helical domain DinB_2 PF12867.2 gi|307594977|ref|YP_003901294.1| - 0.23 11.8 0.8 1.9 8.8 0.0 2.2 1 1 1 2 2 2 0 DinB superfamily Prefoldin_2 PF01920.15 gi|307594977|ref|YP_003901294.1| - 0.24 11.2 4.2 1.5 8.6 0.2 3.0 2 1 1 3 3 3 0 Prefoldin subunit RPW8 PF05659.6 gi|307594977|ref|YP_003901294.1| - 0.35 10.4 3.4 2.4 7.6 0.3 2.9 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF883 PF05957.8 gi|307594977|ref|YP_003901294.1| - 0.5 10.7 2.6 0.87 10.0 0.1 2.4 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF1470 PF07336.6 gi|307594977|ref|YP_003901294.1| - 0.52 10.6 3.6 7 6.9 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1470) DUF16 PF01519.11 gi|307594977|ref|YP_003901294.1| - 0.97 9.6 4.4 3.7 7.8 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function DUF16 Jnk-SapK_ap_N PF09744.4 gi|307594977|ref|YP_003901294.1| - 1.3 8.9 9.9 0.13 12.2 0.9 2.6 1 1 2 3 3 3 0 JNK_SAPK-associated protein-1 DUF4375 PF14300.1 gi|307594977|ref|YP_003901294.1| - 1.3 8.9 5.8 0.7 9.8 2.1 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4375) HJURP_C PF12347.3 gi|307594977|ref|YP_003901294.1| - 1.4 8.5 6.0 5.7 6.5 1.5 2.9 2 1 1 3 3 3 0 Holliday junction regulator protein family C-terminal repeat SPX PF03105.14 gi|307594977|ref|YP_003901294.1| - 1.8 8.2 4.5 2 8.0 3.1 1.4 1 1 0 1 1 1 0 SPX domain IncA PF04156.9 gi|307594977|ref|YP_003901294.1| - 2.4 7.6 10.3 6.2 6.3 6.9 2.1 1 1 0 1 1 1 0 IncA protein CorA PF01544.13 gi|307594977|ref|YP_003901294.1| - 3.6 6.5 6.9 11 4.8 4.8 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF3552 PF12072.3 gi|307594977|ref|YP_003901294.1| - 3.9 6.6 12.1 0.019 14.1 1.3 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF3552) DUF4164 PF13747.1 gi|307594977|ref|YP_003901294.1| - 6.3 7.0 8.6 0.51 10.4 0.8 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) NTP_transf_2 PF01909.18 gi|307594978|ref|YP_003901295.1| - 1.4e-06 28.5 0.2 1.7e-06 28.2 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain HEPN PF05168.9 gi|307594979|ref|YP_003901296.1| - 1e-25 89.9 0.1 1.2e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 HEPN domain Asp_protease_2 PF13650.1 gi|307594980|ref|YP_003901297.1| - 2.4e-08 34.3 0.1 3.4e-08 33.8 0.1 1.3 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|307594980|ref|YP_003901297.1| - 3e-07 30.1 0.1 5.9e-07 29.2 0.0 1.5 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|307594980|ref|YP_003901297.1| - 0.00029 20.7 0.0 0.00035 20.4 0.0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp_protease PF09668.5 gi|307594980|ref|YP_003901297.1| - 0.11 12.1 0.1 0.14 11.7 0.1 1.2 1 0 0 1 1 1 0 Aspartyl protease Arch_ATPase PF01637.13 gi|307594981|ref|YP_003901298.1| - 8.3e-38 130.3 0.1 1.2e-37 129.8 0.1 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|307594981|ref|YP_003901298.1| - 3e-12 46.5 0.0 0.00011 22.1 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|307594981|ref|YP_003901298.1| - 7.9e-10 39.0 0.1 3.6e-09 36.8 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|307594981|ref|YP_003901298.1| - 1.8e-07 31.3 0.0 4.4e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|307594981|ref|YP_003901298.1| - 0.0021 18.2 0.0 0.0064 16.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|307594981|ref|YP_003901298.1| - 0.047 12.6 0.0 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) CobA_CobO_BtuR PF02572.10 gi|307594981|ref|YP_003901298.1| - 0.069 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP HAS-barrel PF09378.5 gi|307594982|ref|YP_003901299.1| - 0.076 12.9 0.2 3.9 7.4 0.0 2.6 2 1 0 2 2 2 0 HAS barrel domain PRANC PF09372.5 gi|307594983|ref|YP_003901300.1| - 0.087 12.8 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 PRANC domain Rifin_STEVOR PF02009.11 gi|307594984|ref|YP_003901301.1| - 0.33 10.5 1.4 0.63 9.6 0.9 1.4 1 0 0 1 1 1 0 Rifin/stevor family DUF1626 PF07788.6 gi|307594985|ref|YP_003901302.1| - 4.1e-19 68.1 2.5 6.4e-19 67.5 0.9 2.0 2 0 0 2 2 1 1 Protein of unknown function (DUF1626) DUF972 PF06156.8 gi|307594985|ref|YP_003901302.1| - 8.6e-09 35.7 32.8 0.00033 20.9 2.8 5.1 1 1 4 5 5 5 3 Protein of unknown function (DUF972) APG6 PF04111.7 gi|307594985|ref|YP_003901302.1| - 1.2e-06 27.8 37.8 0.00064 18.8 11.5 3.1 1 1 1 3 3 3 2 Autophagy protein Apg6 V_ATPase_I PF01496.14 gi|307594985|ref|YP_003901302.1| - 2.8e-05 22.2 19.9 0.0017 16.2 2.7 3.2 1 1 2 3 3 3 3 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|307594985|ref|YP_003901302.1| - 0.00017 21.2 42.1 0.015 14.8 13.3 3.5 2 1 1 3 3 3 3 IncA protein CCDC155 PF14662.1 gi|307594985|ref|YP_003901302.1| - 0.00028 20.5 48.6 0.0012 18.4 14.4 3.4 1 1 1 3 3 3 2 Coiled-coil region of CCDC155 DUF948 PF06103.6 gi|307594985|ref|YP_003901302.1| - 0.00047 19.9 16.5 0.4 10.5 0.4 4.9 2 2 3 5 5 5 1 Bacterial protein of unknown function (DUF948) Spc7 PF08317.6 gi|307594985|ref|YP_003901302.1| - 0.0005 18.8 19.8 0.0005 18.8 13.7 2.9 1 1 1 2 2 2 1 Spc7 kinetochore protein BLOC1_2 PF10046.4 gi|307594985|ref|YP_003901302.1| - 0.00061 19.8 26.1 0.27 11.3 3.2 4.7 2 2 2 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 MCPsignal PF00015.16 gi|307594985|ref|YP_003901302.1| - 0.00061 19.3 13.3 0.31 10.5 0.4 3.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain EzrA PF06160.7 gi|307594985|ref|YP_003901302.1| - 0.001 17.4 28.5 0.13 10.3 6.5 3.4 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Reo_sigmaC PF04582.7 gi|307594985|ref|YP_003901302.1| - 0.0017 17.5 3.2 0.81 8.8 1.6 2.5 1 1 1 2 2 2 2 Reovirus sigma C capsid protein DUF3782 PF12644.2 gi|307594985|ref|YP_003901302.1| - 0.0035 17.0 28.9 0.33 10.7 20.1 3.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) Dor1 PF04124.7 gi|307594985|ref|YP_003901302.1| - 0.0085 14.5 21.3 0.16 10.4 4.6 3.5 1 1 2 3 3 3 2 Dor1-like family Tweety PF04906.8 gi|307594985|ref|YP_003901302.1| - 0.0089 14.4 15.8 0.043 12.2 0.6 3.1 1 1 2 3 3 3 2 Tweety ERM PF00769.14 gi|307594985|ref|YP_003901302.1| - 0.011 15.2 15.3 0.011 15.2 10.6 3.1 1 1 2 3 3 3 0 Ezrin/radixin/moesin family HALZ PF02183.13 gi|307594985|ref|YP_003901302.1| - 0.012 15.3 27.3 0.34 10.6 0.0 6.7 3 2 5 8 8 8 0 Homeobox associated leucine zipper NPV_P10 PF05531.7 gi|307594985|ref|YP_003901302.1| - 0.015 15.5 15.4 3 8.1 0.7 4.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Prominin PF05478.6 gi|307594985|ref|YP_003901302.1| - 0.017 12.7 16.6 0.0049 14.4 7.0 2.1 1 1 1 2 2 2 0 Prominin DUF2935 PF11155.3 gi|307594985|ref|YP_003901302.1| - 0.031 14.3 11.7 0.44 10.6 0.6 3.7 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Herpes_U30 PF04523.8 gi|307594985|ref|YP_003901302.1| - 0.033 11.6 11.2 0.033 11.6 0.1 2.7 1 1 0 2 2 2 0 Herpes virus tegument protein U30 ATG16 PF08614.6 gi|307594985|ref|YP_003901302.1| - 0.046 13.5 34.3 0.26 11.0 10.7 3.4 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|307594985|ref|YP_003901302.1| - 0.049 13.4 19.9 2.9 7.6 0.7 4.5 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) Phage_GPO PF05929.6 gi|307594985|ref|YP_003901302.1| - 0.056 12.6 0.3 0.056 12.6 0.2 3.3 1 1 1 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase GAS PF13851.1 gi|307594985|ref|YP_003901302.1| - 0.1 11.7 35.1 1.5 7.9 8.9 3.3 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding Hemerythrin PF01814.18 gi|307594985|ref|YP_003901302.1| - 0.11 12.6 18.4 0.46 10.6 1.7 3.9 1 1 2 4 4 4 0 Hemerythrin HHE cation binding domain HapK PF11639.3 gi|307594985|ref|YP_003901302.1| - 0.12 12.9 0.2 0.5 11.0 0.0 2.2 3 0 0 3 3 1 0 REDY-like protein HapK Sec34 PF04136.10 gi|307594985|ref|YP_003901302.1| - 0.17 11.5 16.4 0.18 11.4 1.1 4.2 2 1 2 4 4 4 0 Sec34-like family Syntaxin PF00804.20 gi|307594985|ref|YP_003901302.1| - 0.24 11.5 25.2 0.76 9.9 1.8 4.4 2 1 1 3 3 3 0 Syntaxin Laminin_II PF06009.7 gi|307594985|ref|YP_003901302.1| - 0.26 11.0 23.2 0.53 10.0 2.5 3.6 1 1 3 4 4 4 0 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|307594985|ref|YP_003901302.1| - 0.27 11.2 37.7 0.83 9.6 6.5 4.6 3 1 2 5 5 4 0 Seryl-tRNA synthetase N-terminal domain Cluap1 PF10234.4 gi|307594985|ref|YP_003901302.1| - 0.41 9.7 27.2 0.45 9.6 5.2 3.1 1 1 2 3 3 3 0 Clusterin-associated protein-1 Tektin PF03148.9 gi|307594985|ref|YP_003901302.1| - 0.62 8.5 34.2 0.068 11.6 1.4 4.6 2 1 2 4 4 4 0 Tektin family Pinin_SDK_N PF04697.8 gi|307594985|ref|YP_003901302.1| - 0.68 9.9 5.3 1.7 8.6 0.3 3.0 2 1 0 2 2 2 0 pinin/SDK conserved region Kinesin-relat_1 PF12711.2 gi|307594985|ref|YP_003901302.1| - 0.68 10.3 32.1 0.22 11.9 2.4 5.4 2 1 3 5 5 5 0 Kinesin motor DUF1202 PF06717.6 gi|307594985|ref|YP_003901302.1| - 0.69 9.1 11.8 1.5 8.0 0.3 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1202) DUF2205 PF10224.4 gi|307594985|ref|YP_003901302.1| - 0.85 9.2 35.8 0.092 12.3 2.5 5.7 3 1 3 6 6 6 0 Predicted coiled-coil protein (DUF2205) Laminin_I PF06008.9 gi|307594985|ref|YP_003901302.1| - 0.88 8.8 32.8 2.2 7.5 16.2 3.3 1 1 0 2 2 2 0 Laminin Domain I DUF4201 PF13870.1 gi|307594985|ref|YP_003901302.1| - 1.2 8.5 29.6 0.16 11.3 3.1 3.6 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) zf-C4H2 PF10146.4 gi|307594985|ref|YP_003901302.1| - 1.3 8.9 29.5 0.24 11.3 7.5 3.1 1 1 2 3 3 3 0 Zinc finger-containing protein COG6 PF06419.6 gi|307594985|ref|YP_003901302.1| - 1.6 6.8 21.1 1.1 7.2 4.4 2.9 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 Snapin_Pallidin PF14712.1 gi|307594985|ref|YP_003901302.1| - 1.8 8.9 29.9 25 5.2 4.2 6.4 2 2 4 6 6 6 0 Snapin/Pallidin DUF2365 PF10157.4 gi|307594985|ref|YP_003901302.1| - 2 8.2 9.8 3.8 7.3 1.8 3.4 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2365) Taxilin PF09728.4 gi|307594985|ref|YP_003901302.1| - 2.1 7.3 30.4 4 6.4 18.2 2.7 1 1 1 2 2 2 0 Myosin-like coiled-coil protein PTRF_SDPR PF15237.1 gi|307594985|ref|YP_003901302.1| - 3 7.1 20.4 0.025 14.0 1.4 3.5 2 1 2 4 4 2 0 PTRF/SDPR family DUF812 PF05667.6 gi|307594985|ref|YP_003901302.1| - 3.7 5.9 32.6 0.43 9.0 17.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) TMF_DNA_bd PF12329.3 gi|307594985|ref|YP_003901302.1| - 7.9 6.3 36.2 0.41 10.4 1.4 4.5 2 2 2 4 4 4 0 TATA element modulatory factor 1 DNA binding DUF904 PF06005.7 gi|307594985|ref|YP_003901302.1| - 8.2 6.8 53.8 5.8 7.2 4.6 5.8 2 2 4 6 6 5 0 Protein of unknown function (DUF904) DUF86 PF01934.12 gi|307594986|ref|YP_003901303.1| - 1.6e-12 47.0 0.1 4.9e-12 45.5 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|307594986|ref|YP_003901303.1| - 0.065 13.5 0.9 0.14 12.4 0.2 2.0 2 1 0 2 2 2 0 Nucleotidyltransferase domain Arch_ATPase PF01637.13 gi|307594987|ref|YP_003901304.1| - 7.8e-56 189.3 0.0 9.7e-56 189.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase DAP3 PF10236.4 gi|307594987|ref|YP_003901304.1| - 0.0045 15.9 0.0 0.037 12.9 0.0 2.1 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 AAA_16 PF13191.1 gi|307594987|ref|YP_003901304.1| - 0.032 14.2 0.2 0.13 12.2 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|307594987|ref|YP_003901304.1| - 0.032 14.3 0.0 0.06 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|307594987|ref|YP_003901304.1| - 0.06 13.5 0.0 0.25 11.5 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|307594987|ref|YP_003901304.1| - 0.095 12.6 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|307594987|ref|YP_003901304.1| - 0.1 12.3 0.0 0.28 10.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|307594987|ref|YP_003901304.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF3447 PF11929.3 gi|307594989|ref|YP_003901306.1| - 0.072 12.9 0.1 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3447) zf-ribbon_3 PF13248.1 gi|307594990|ref|YP_003901307.1| - 0.14 11.3 0.1 0.22 10.8 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|307594990|ref|YP_003901307.1| - 0.15 11.5 0.2 0.27 10.7 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|307594990|ref|YP_003901307.1| - 0.52 10.6 4.6 1 9.6 3.2 1.7 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain PaREP1 PF05942.6 gi|307594992|ref|YP_003901309.1| - 2.3e-35 120.9 0.5 2.3e-35 120.9 0.4 1.7 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family Myb_DNA-binding PF00249.26 gi|307594992|ref|YP_003901309.1| - 0.055 13.5 0.1 1.6 8.8 0.2 2.8 3 0 0 3 3 3 0 Myb-like DNA-binding domain PaREP1 PF05942.6 gi|307594993|ref|YP_003901310.1| - 2.4e-28 98.3 2.5 3.1e-28 97.9 1.7 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Glycos_transf_2 PF00535.21 gi|307594995|ref|YP_003901312.1| - 5e-21 75.1 0.1 7.3e-21 74.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|307594995|ref|YP_003901312.1| - 3e-18 66.4 0.0 6e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|307594995|ref|YP_003901312.1| - 1.4e-08 34.7 0.0 2e-08 34.1 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|307594995|ref|YP_003901312.1| - 0.0042 16.2 0.0 0.007 15.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|307594995|ref|YP_003901312.1| - 0.032 14.5 0.0 0.068 13.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|307594996|ref|YP_003901313.1| - 3e-08 33.2 0.0 5.6e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|307594996|ref|YP_003901313.1| - 0.00072 19.7 0.0 0.0015 18.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|307594996|ref|YP_003901313.1| - 0.0052 16.9 1.1 0.0091 16.1 0.8 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF3880 PF12996.2 gi|307594996|ref|YP_003901313.1| - 0.013 15.3 0.0 0.042 13.7 0.0 1.8 1 0 0 1 1 1 0 DUF based on E. rectale Gene description (DUF3880) Glycos_transf_1 PF00534.15 gi|307594997|ref|YP_003901314.1| - 2.9e-14 52.8 0.0 4.7e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|307594997|ref|YP_003901314.1| - 5.4e-06 26.6 0.0 1.3e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|307594998|ref|YP_003901315.1| - 1.4e-14 54.1 0.1 2.2e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|307594998|ref|YP_003901315.1| - 1.8e-07 31.2 0.0 3.2e-07 30.3 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|307594998|ref|YP_003901315.1| - 2.2e-05 23.6 0.1 0.00012 21.3 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|307594998|ref|YP_003901315.1| - 6e-05 22.8 0.1 8.8e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|307594998|ref|YP_003901315.1| - 0.055 12.7 0.0 0.16 11.2 0.0 1.8 2 1 0 2 2 2 0 Glycosyl transferase family 21 DUF3702 PF12486.3 gi|307594998|ref|YP_003901315.1| - 0.094 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 ImpA domain protein Glycos_transf_1 PF00534.15 gi|307594999|ref|YP_003901316.1| - 2.8e-19 69.1 0.0 1.2e-18 67.1 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307594999|ref|YP_003901316.1| - 2.8e-15 56.6 0.1 5.7e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|307594999|ref|YP_003901316.1| - 0.00035 20.3 0.0 0.0027 17.4 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|307594999|ref|YP_003901316.1| - 0.00076 19.7 0.0 0.0017 18.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|307594999|ref|YP_003901316.1| - 0.029 14.5 0.0 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain DUF972 PF06156.8 gi|307595000|ref|YP_003901317.1| - 1.6e-10 41.2 24.8 0.0065 16.8 3.2 5.2 1 1 6 7 7 7 6 Protein of unknown function (DUF972) APG6 PF04111.7 gi|307595000|ref|YP_003901317.1| - 6.8e-08 31.9 37.6 0.0018 17.3 3.6 3.1 1 1 2 3 3 3 3 Autophagy protein Apg6 DUF948 PF06103.6 gi|307595000|ref|YP_003901317.1| - 8.9e-08 31.8 5.1 0.38 10.6 0.2 4.9 2 1 3 5 5 4 3 Bacterial protein of unknown function (DUF948) Dor1 PF04124.7 gi|307595000|ref|YP_003901317.1| - 1.8e-06 26.6 14.0 0.00092 17.7 2.7 3.9 1 1 2 3 3 3 3 Dor1-like family EzrA PF06160.7 gi|307595000|ref|YP_003901317.1| - 3.5e-06 25.4 8.6 3.5e-06 25.4 5.9 2.1 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA CCDC155 PF14662.1 gi|307595000|ref|YP_003901317.1| - 4.5e-06 26.4 32.1 0.001 18.7 15.8 2.6 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 zf-C4H2 PF10146.4 gi|307595000|ref|YP_003901317.1| - 5.9e-06 26.4 21.8 0.014 15.4 1.4 3.3 1 1 2 3 3 3 3 Zinc finger-containing protein ERM PF00769.14 gi|307595000|ref|YP_003901317.1| - 1.5e-05 24.6 32.1 0.024 14.2 9.1 3.1 1 1 2 3 3 3 3 Ezrin/radixin/moesin family MutS_III PF05192.13 gi|307595000|ref|YP_003901317.1| - 8.2e-05 22.4 1.2 0.00043 20.1 0.6 2.2 1 1 1 2 2 2 1 MutS domain III DivIC PF04977.10 gi|307595000|ref|YP_003901317.1| - 9.5e-05 21.8 37.8 0.47 9.9 2.3 6.4 1 1 4 6 6 6 3 Septum formation initiator CENP-F_leu_zip PF10473.4 gi|307595000|ref|YP_003901317.1| - 0.00011 22.0 28.6 0.083 12.7 7.9 3.3 1 1 2 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Hemerythrin PF01814.18 gi|307595000|ref|YP_003901317.1| - 0.00023 21.3 7.6 0.19 11.8 0.3 3.7 1 1 2 3 3 3 2 Hemerythrin HHE cation binding domain HALZ PF02183.13 gi|307595000|ref|YP_003901317.1| - 0.0003 20.4 21.8 6.8 6.4 0.0 8.1 3 2 5 9 9 9 0 Homeobox associated leucine zipper Cbl_N PF02262.11 gi|307595000|ref|YP_003901317.1| - 0.00048 19.8 4.3 1.4 8.6 0.0 4.8 1 1 5 6 6 6 1 CBL proto-oncogene N-terminal domain 1 DegS PF05384.6 gi|307595000|ref|YP_003901317.1| - 0.00065 18.9 0.2 0.00065 18.9 0.2 4.5 2 1 3 5 5 4 1 Sensor protein DegS GAS PF13851.1 gi|307595000|ref|YP_003901317.1| - 0.0014 17.8 30.1 0.034 13.3 9.6 3.2 1 1 2 3 3 3 2 Growth-arrest specific micro-tubule binding IncA PF04156.9 gi|307595000|ref|YP_003901317.1| - 0.0015 18.1 37.3 0.097 12.2 1.2 3.3 1 1 2 3 3 3 2 IncA protein DUF869 PF05911.6 gi|307595000|ref|YP_003901317.1| - 0.0016 16.7 12.8 0.0023 16.2 8.9 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) PTRF_SDPR PF15237.1 gi|307595000|ref|YP_003901317.1| - 0.0026 17.1 15.5 0.31 10.4 0.6 4.2 1 1 3 4 4 4 2 PTRF/SDPR family SmpB PF01668.13 gi|307595000|ref|YP_003901317.1| - 0.0056 16.4 2.8 59 3.5 0.0 5.4 5 0 0 5 5 5 0 SmpB protein Snapin_Pallidin PF14712.1 gi|307595000|ref|YP_003901317.1| - 0.0068 16.6 16.3 3.9 7.8 0.8 5.2 1 1 1 4 4 4 0 Snapin/Pallidin DUF4618 PF15397.1 gi|307595000|ref|YP_003901317.1| - 0.007 15.7 27.8 0.17 11.1 6.7 3.4 1 1 2 3 3 3 2 Domain of unknown function (DUF4618) DUF2353 PF09789.4 gi|307595000|ref|YP_003901317.1| - 0.0073 15.6 19.1 0.2 10.9 3.7 2.2 1 1 1 2 2 2 2 Uncharacterized coiled-coil protein (DUF2353) COG5 PF10392.4 gi|307595000|ref|YP_003901317.1| - 0.0085 16.0 8.5 9.3 6.2 0.1 4.2 1 1 3 4 4 4 0 Golgi transport complex subunit 5 Myosin_tail_1 PF01576.14 gi|307595000|ref|YP_003901317.1| - 0.012 13.3 30.6 0.17 9.5 10.4 2.0 1 1 1 2 2 2 0 Myosin tail DUF1664 PF07889.7 gi|307595000|ref|YP_003901317.1| - 0.016 14.9 16.3 1.3 8.8 0.8 4.2 2 1 5 7 7 6 0 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.3 gi|307595000|ref|YP_003901317.1| - 0.016 14.9 2.4 0.016 14.9 1.7 4.1 3 1 1 4 4 4 0 TATA element modulatory factor 1 DNA binding Occludin_ELL PF07303.8 gi|307595000|ref|YP_003901317.1| - 0.018 15.7 14.8 2.5 8.8 0.4 4.0 1 1 3 4 4 4 0 Occludin homology domain BLOC1_2 PF10046.4 gi|307595000|ref|YP_003901317.1| - 0.02 15.0 21.0 0.17 12.0 0.5 4.5 1 1 4 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1626 PF07788.6 gi|307595000|ref|YP_003901317.1| - 0.024 14.3 1.0 0.059 13.1 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1626) Reo_sigmaC PF04582.7 gi|307595000|ref|YP_003901317.1| - 0.025 13.7 0.0 7.6 5.6 0.0 2.6 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Prominin PF05478.6 gi|307595000|ref|YP_003901317.1| - 0.056 10.9 11.5 0.24 8.8 0.1 3.1 1 1 2 3 3 3 0 Prominin RmuC PF02646.11 gi|307595000|ref|YP_003901317.1| - 0.06 12.1 18.2 0.085 11.6 0.6 3.9 1 1 3 4 4 4 0 RmuC family ADIP PF11559.3 gi|307595000|ref|YP_003901317.1| - 0.066 13.1 30.2 0.25 11.2 1.8 3.2 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding WEMBL PF05701.6 gi|307595000|ref|YP_003901317.1| - 0.067 11.6 21.7 1.6 7.0 14.9 2.1 1 1 0 1 1 1 0 Weak chloroplast movement under blue light HOOK PF05622.7 gi|307595000|ref|YP_003901317.1| - 0.09 10.5 25.5 0.23 9.2 17.7 1.6 1 1 0 1 1 1 0 HOOK protein V_ATPase_I PF01496.14 gi|307595000|ref|YP_003901317.1| - 0.09 10.6 23.1 0.29 8.9 10.2 2.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family bZIP_1 PF00170.16 gi|307595000|ref|YP_003901317.1| - 0.12 12.4 29.7 1.9 8.4 0.7 5.7 1 1 5 7 7 7 0 bZIP transcription factor Nnf1 PF03980.9 gi|307595000|ref|YP_003901317.1| - 0.16 11.9 27.7 0.22 11.5 0.1 6.8 2 2 5 8 8 8 0 Nnf1 FUSC PF04632.7 gi|307595000|ref|YP_003901317.1| - 0.18 10.2 5.3 0.84 7.9 2.9 2.0 1 1 0 1 1 1 0 Fusaric acid resistance protein family Syntaxin PF00804.20 gi|307595000|ref|YP_003901317.1| - 0.21 11.7 17.9 78 3.5 5.4 4.3 1 1 1 2 2 2 0 Syntaxin UPF0449 PF15136.1 gi|307595000|ref|YP_003901317.1| - 0.21 11.7 23.1 7.6 6.8 1.0 5.4 1 1 6 7 7 7 0 Uncharacterised protein family UPF0449 Laminin_I PF06008.9 gi|307595000|ref|YP_003901317.1| - 0.26 10.5 25.1 0.41 9.9 5.2 2.8 1 1 2 3 3 3 0 Laminin Domain I bZIP_Maf PF03131.12 gi|307595000|ref|YP_003901317.1| - 0.26 11.5 26.0 7.3 6.9 1.4 5.2 1 1 5 6 6 6 0 bZIP Maf transcription factor BRE1 PF08647.6 gi|307595000|ref|YP_003901317.1| - 0.41 10.6 18.6 4.6 7.2 3.2 3.7 1 1 3 4 4 4 0 BRE1 E3 ubiquitin ligase DASH_Dad3 PF08656.5 gi|307595000|ref|YP_003901317.1| - 0.51 10.0 14.9 17 5.1 0.0 5.0 2 1 1 3 3 3 0 DASH complex subunit Dad3 Sec34 PF04136.10 gi|307595000|ref|YP_003901317.1| - 0.66 9.6 8.9 8.3 6.0 0.1 3.4 1 1 3 4 4 4 0 Sec34-like family MAD PF05557.8 gi|307595000|ref|YP_003901317.1| - 0.68 7.9 24.9 0.93 7.5 16.5 1.8 2 1 0 2 2 2 0 Mitotic checkpoint protein Tweety PF04906.8 gi|307595000|ref|YP_003901317.1| - 0.76 8.1 5.1 1 7.6 0.3 2.5 1 1 2 3 3 3 0 Tweety Taxilin PF09728.4 gi|307595000|ref|YP_003901317.1| - 0.76 8.7 26.0 0.49 9.4 10.1 2.2 1 1 1 2 2 2 0 Myosin-like coiled-coil protein DUF4201 PF13870.1 gi|307595000|ref|YP_003901317.1| - 0.8 9.1 23.5 8.4 5.7 1.1 3.7 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) DUF342 PF03961.8 gi|307595000|ref|YP_003901317.1| - 0.9 7.8 24.3 0.49 8.7 3.5 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF342) DUF904 PF06005.7 gi|307595000|ref|YP_003901317.1| - 0.98 9.7 49.3 4.4e+02 1.2 8.5 5.6 1 1 2 3 3 2 0 Protein of unknown function (DUF904) DivIVA PF05103.8 gi|307595000|ref|YP_003901317.1| - 0.99 9.4 22.5 6.3 6.8 1.5 5.1 1 1 3 4 4 3 0 DivIVA protein Herpes_U30 PF04523.8 gi|307595000|ref|YP_003901317.1| - 1.3 6.3 7.4 1.2 6.4 1.2 2.2 1 1 2 3 3 3 0 Herpes virus tegument protein U30 Laminin_II PF06009.7 gi|307595000|ref|YP_003901317.1| - 1.3 8.7 20.8 3.7 7.2 4.5 4.3 2 1 2 4 4 4 0 Laminin Domain II DUF1875 PF08961.5 gi|307595000|ref|YP_003901317.1| - 1.3 8.2 21.7 0.12 11.6 0.9 4.2 1 1 3 4 4 4 0 Domain of unknown function (DUF1875) DUF2379 PF09543.5 gi|307595000|ref|YP_003901317.1| - 1.5 8.8 8.8 0.58 10.1 0.1 4.1 2 1 1 4 4 3 0 Protein of unknown function (DUF2379) Kinesin-relat_1 PF12711.2 gi|307595000|ref|YP_003901317.1| - 1.6 9.1 31.3 12 6.3 3.7 5.5 1 1 2 4 4 4 0 Kinesin motor DUF4239 PF14023.1 gi|307595000|ref|YP_003901317.1| - 1.9 7.8 9.0 1 8.6 0.9 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF4239) AAA_21 PF13304.1 gi|307595000|ref|YP_003901317.1| - 2.4 8.0 5.5 3.8 7.3 3.8 1.4 1 0 0 1 1 1 0 AAA domain MCPsignal PF00015.16 gi|307595000|ref|YP_003901317.1| - 2.6 7.5 11.3 2.1 7.8 0.6 3.2 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain TMF_TATA_bd PF12325.3 gi|307595000|ref|YP_003901317.1| - 2.8 7.7 36.5 6.6 6.4 3.6 4.6 3 1 2 5 5 3 0 TATA element modulatory factor 1 TATA binding DUF2205 PF10224.4 gi|307595000|ref|YP_003901317.1| - 4.6 6.8 27.3 1.3 8.6 1.4 5.3 1 1 4 5 5 5 0 Predicted coiled-coil protein (DUF2205) Mod_r PF07200.8 gi|307595000|ref|YP_003901317.1| - 5.7 6.8 27.5 1.5 8.7 3.4 4.1 2 1 3 5 5 4 0 Modifier of rudimentary (Mod(r)) protein DUF1640 PF07798.6 gi|307595000|ref|YP_003901317.1| - 6.6 6.7 15.2 3.7 7.5 1.4 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF1640) BicD PF09730.4 gi|307595000|ref|YP_003901317.1| - 9.4 4.4 29.3 8.9 4.5 12.7 2.5 1 1 1 2 2 2 0 Microtubule-associated protein Bicaudal-D NTP_transf_3 PF12804.2 gi|307595001|ref|YP_003901318.1| - 2.2e-16 60.3 0.0 2.5e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|307595001|ref|YP_003901318.1| - 9e-06 25.4 0.0 1.1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Glycos_transf_N PF04413.11 gi|307595001|ref|YP_003901318.1| - 0.00074 18.7 0.1 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NTP_transferase PF00483.18 gi|307595001|ref|YP_003901318.1| - 0.0017 17.7 0.0 0.0024 17.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.14 gi|307595001|ref|YP_003901318.1| - 0.0023 17.5 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_3 PF12804.2 gi|307595002|ref|YP_003901319.1| - 1.7e-24 86.7 0.0 2.5e-24 86.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.11 gi|307595002|ref|YP_003901319.1| - 6.6e-05 21.9 0.6 0.00015 20.8 0.0 1.7 2 0 0 2 2 2 1 Guanylyl transferase CofC like CTP_transf_3 PF02348.14 gi|307595002|ref|YP_003901319.1| - 0.0038 16.8 0.0 0.0062 16.1 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase Rifin_STEVOR PF02009.11 gi|307595003|ref|YP_003901320.1| - 0.026 14.1 1.7 0.035 13.7 1.2 1.3 1 0 0 1 1 1 0 Rifin/stevor family DUF1517 PF07466.6 gi|307595003|ref|YP_003901320.1| - 0.064 12.2 0.9 0.09 11.7 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) PgaD PF13994.1 gi|307595003|ref|YP_003901320.1| - 0.2 11.1 0.1 0.2 11.1 0.1 1.7 2 0 0 2 2 2 0 PgaD-like protein Sm_multidrug_ex PF06695.6 gi|307595003|ref|YP_003901320.1| - 0.22 11.6 6.4 0.12 12.5 0.7 2.6 2 1 0 2 2 2 0 Putative small multi-drug export protein Tad PF13400.1 gi|307595003|ref|YP_003901320.1| - 2.9 7.9 7.1 1.5 8.8 0.7 2.5 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like LRRC37AB_C PF14914.1 gi|307595003|ref|YP_003901320.1| - 3.9 6.9 5.7 0.61 9.5 0.5 2.0 2 0 0 2 2 2 0 LRRC37A/B like protein 1 C-terminal domain Adeno_E3_CR2 PF02439.10 gi|307595003|ref|YP_003901320.1| - 3.9 7.1 11.7 0.049 13.1 2.3 2.1 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 Vpu PF00558.14 gi|307595003|ref|YP_003901320.1| - 8.4 6.0 9.9 0.26 10.8 2.2 1.8 2 0 0 2 2 2 0 Vpu protein DUF4083 PF13314.1 gi|307595003|ref|YP_003901320.1| - 9.9 6.0 9.6 3.9 7.3 2.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Hist_deacetyl PF00850.14 gi|307595004|ref|YP_003901321.1| - 1.1e-87 294.2 0.0 1.4e-87 293.8 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain Erp_C PF06780.6 gi|307595005|ref|YP_003901322.1| - 0.048 13.5 3.6 0.058 13.2 2.5 1.2 1 0 0 1 1 1 0 Erp protein C-terminus COG2 PF06148.6 gi|307595005|ref|YP_003901322.1| - 0.074 12.9 2.5 0.12 12.2 1.7 1.4 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4611 PF15387.1 gi|307595005|ref|YP_003901322.1| - 0.38 10.9 4.9 0.89 9.7 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4611) Takusan PF04822.8 gi|307595005|ref|YP_003901322.1| - 0.51 10.1 3.1 0.68 9.7 0.5 1.9 2 0 0 2 2 2 0 Takusan Syntaxin PF00804.20 gi|307595005|ref|YP_003901322.1| - 0.51 10.5 3.3 6.4 6.9 0.4 2.1 1 1 1 2 2 2 0 Syntaxin FbpA PF05833.6 gi|307595006|ref|YP_003901323.1| - 1.2e-40 139.4 0.2 1.5e-40 139.0 0.2 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|307595006|ref|YP_003901323.1| - 5.9e-23 80.5 0.0 1.4e-22 79.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF814) Prefoldin_2 PF01920.15 gi|307595006|ref|YP_003901323.1| - 9.1e-05 22.1 1.5 0.049 13.3 0.0 2.6 2 0 0 2 2 2 1 Prefoldin subunit DUF4140 PF13600.1 gi|307595006|ref|YP_003901323.1| - 0.0043 17.4 1.1 0.06 13.7 0.2 2.4 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) TPR_MLP1_2 PF07926.7 gi|307595006|ref|YP_003901323.1| - 0.005 16.5 2.6 0.23 11.2 0.0 2.2 2 0 0 2 2 2 1 TPR/MLP1/MLP2-like protein CENP-F_leu_zip PF10473.4 gi|307595006|ref|YP_003901323.1| - 0.0072 16.1 6.6 0.93 9.3 1.5 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG17 PF04108.7 gi|307595006|ref|YP_003901323.1| - 0.016 14.0 0.9 0.61 8.8 0.0 2.3 2 0 0 2 2 2 0 Autophagy protein Apg17 ATG16 PF08614.6 gi|307595006|ref|YP_003901323.1| - 0.05 13.4 3.5 1.8 8.3 0.2 2.2 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) FlaC_arch PF05377.6 gi|307595006|ref|YP_003901323.1| - 0.051 13.4 8.3 0.43 10.5 0.7 3.1 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF624 PF04854.9 gi|307595006|ref|YP_003901323.1| - 0.068 13.0 0.1 0.2 11.5 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function, DUF624 Syntaxin PF00804.20 gi|307595006|ref|YP_003901323.1| - 0.073 13.2 3.8 0.73 10.0 0.7 2.4 2 0 0 2 2 2 0 Syntaxin DUF4200 PF13863.1 gi|307595006|ref|YP_003901323.1| - 0.08 12.8 13.2 0.34 10.8 1.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Myosin_tail_1 PF01576.14 gi|307595006|ref|YP_003901323.1| - 0.09 10.4 4.0 0.28 8.8 0.2 2.0 2 0 0 2 2 2 0 Myosin tail PspA_IM30 PF04012.7 gi|307595006|ref|YP_003901323.1| - 0.091 12.1 3.0 0.31 10.3 0.3 2.2 2 0 0 2 2 2 0 PspA/IM30 family DUF3467 PF11950.3 gi|307595006|ref|YP_003901323.1| - 0.12 12.4 0.1 0.34 10.9 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3467) HSA PF07529.8 gi|307595006|ref|YP_003901323.1| - 0.13 12.0 0.5 1.2 8.9 0.1 2.4 2 0 0 2 2 2 0 HSA CENP-Q PF13094.1 gi|307595006|ref|YP_003901323.1| - 0.14 12.1 3.0 0.067 13.2 0.4 1.6 2 0 0 2 2 1 0 CENP-Q, a CENPA-CAD centromere complex subunit MerR-DNA-bind PF09278.6 gi|307595006|ref|YP_003901323.1| - 0.14 12.5 2.8 6.6 7.2 0.0 2.4 2 0 0 2 2 2 0 MerR, DNA binding Tektin PF03148.9 gi|307595006|ref|YP_003901323.1| - 0.17 10.4 2.5 0.52 8.8 0.1 2.0 2 0 0 2 2 2 0 Tektin family Prefoldin PF02996.12 gi|307595006|ref|YP_003901323.1| - 0.17 11.5 2.9 4.2 7.0 0.5 2.4 2 0 0 2 2 2 0 Prefoldin subunit DUF3584 PF12128.3 gi|307595006|ref|YP_003901323.1| - 0.26 8.5 3.7 0.18 9.1 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) CASP_C PF08172.7 gi|307595006|ref|YP_003901323.1| - 0.27 10.2 2.9 0.56 9.1 2.0 1.4 1 0 0 1 1 1 0 CASP C terminal Med9 PF07544.8 gi|307595006|ref|YP_003901323.1| - 0.29 10.8 2.3 0.7 9.6 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF2205 PF10224.4 gi|307595006|ref|YP_003901323.1| - 0.31 10.6 4.6 2.3 7.8 0.7 2.4 2 0 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) IncA PF04156.9 gi|307595006|ref|YP_003901323.1| - 0.31 10.6 6.5 2 8.0 0.4 2.2 2 0 0 2 2 2 0 IncA protein Tropomyosin_1 PF12718.2 gi|307595006|ref|YP_003901323.1| - 0.44 10.3 5.6 0.37 10.6 0.4 2.1 2 0 0 2 2 2 0 Tropomyosin like BLOC1_2 PF10046.4 gi|307595006|ref|YP_003901323.1| - 0.44 10.7 2.5 14 5.9 0.1 2.6 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMF_DNA_bd PF12329.3 gi|307595006|ref|YP_003901323.1| - 0.97 9.2 6.9 8.9 6.1 2.4 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4164 PF13747.1 gi|307595006|ref|YP_003901323.1| - 1.4 9.1 7.0 10 6.3 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DivIC PF04977.10 gi|307595006|ref|YP_003901323.1| - 1.7 8.1 4.9 4.2 6.9 1.5 2.5 2 0 0 2 2 2 0 Septum formation initiator APG6 PF04111.7 gi|307595006|ref|YP_003901323.1| - 1.8 7.5 6.6 6 5.8 0.5 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 GrpE PF01025.14 gi|307595006|ref|YP_003901323.1| - 1.8 8.0 6.2 4.8 6.6 0.6 2.6 2 0 0 2 2 2 0 GrpE Syntaxin-6_N PF09177.6 gi|307595006|ref|YP_003901323.1| - 2.3 8.6 5.4 18 5.8 0.5 2.8 2 0 0 2 2 2 0 Syntaxin 6, N-terminal V_ATPase_I PF01496.14 gi|307595006|ref|YP_003901323.1| - 2.5 5.8 6.7 2.7 5.7 0.3 2.1 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF904 PF06005.7 gi|307595006|ref|YP_003901323.1| - 6.7 7.0 11.0 0.83 9.9 2.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) AAA_13 PF13166.1 gi|307595006|ref|YP_003901323.1| - 6.8 5.0 6.9 47 2.2 4.8 1.9 1 1 0 1 1 1 0 AAA domain Mut7-C PF01927.11 gi|307595007|ref|YP_003901324.1| - 1.5e-27 96.3 0.0 1.8e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DNA_ligase_ZBD PF03119.11 gi|307595007|ref|YP_003901324.1| - 0.012 15.3 0.1 0.022 14.4 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain SAM_2 PF07647.12 gi|307595007|ref|YP_003901324.1| - 0.11 12.3 0.1 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) ADK_lid PF05191.9 gi|307595007|ref|YP_003901324.1| - 0.12 12.0 2.9 7.7 6.2 0.2 2.7 3 0 0 3 3 3 0 Adenylate kinase, active site lid zf-ISL3 PF14690.1 gi|307595007|ref|YP_003901324.1| - 0.12 12.3 1.3 3.6 7.6 0.1 2.9 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|307595007|ref|YP_003901324.1| - 0.51 9.7 2.0 4.4 6.7 1.4 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding AMMECR1 PF01871.12 gi|307595008|ref|YP_003901325.1| - 1.1e-23 83.2 0.0 1.3e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 AMMECR1 Thioredoxin_3 PF13192.1 gi|307595009|ref|YP_003901326.1| - 0.001 18.8 0.1 0.001 18.8 0.0 2.2 3 0 0 3 3 3 1 Thioredoxin domain Thioredoxin_4 PF13462.1 gi|307595009|ref|YP_003901326.1| - 0.0071 16.3 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Ribosomal_L35Ae PF01247.13 gi|307595010|ref|YP_003901327.1| - 1.8e-08 34.0 0.0 2.7e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L35Ae V_ATPase_I PF01496.14 gi|307595011|ref|YP_003901328.1| - 1.2e-28 99.4 33.5 5.1e-26 90.7 21.3 4.6 2 2 0 2 2 2 1 V-type ATPase 116kDa subunit family TBPIP PF07106.8 gi|307595011|ref|YP_003901328.1| - 0.0055 16.2 0.1 0.17 11.4 0.0 2.4 2 0 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Laminin_I PF06008.9 gi|307595011|ref|YP_003901328.1| - 0.0075 15.6 0.0 2.3 7.4 0.0 3.0 3 0 0 3 3 3 1 Laminin Domain I Reo_sigmaC PF04582.7 gi|307595011|ref|YP_003901328.1| - 0.014 14.6 0.3 3.5 6.7 0.0 2.3 2 0 0 2 2 2 0 Reovirus sigma C capsid protein DUF2730 PF10805.3 gi|307595011|ref|YP_003901328.1| - 0.018 14.8 0.1 0.94 9.2 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2730) Vac_Fusion PF02346.11 gi|307595011|ref|YP_003901328.1| - 0.02 14.3 0.7 5 6.6 0.1 3.4 3 0 0 3 3 3 0 Chordopoxvirus fusion protein Baculo_PEP_C PF04513.7 gi|307595011|ref|YP_003901328.1| - 0.045 13.5 0.1 1.5 8.6 0.0 2.6 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2156 PF09924.4 gi|307595011|ref|YP_003901328.1| - 0.055 12.2 0.0 0.094 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) CCDC144C PF14915.1 gi|307595011|ref|YP_003901328.1| - 0.056 12.3 0.0 0.12 11.3 0.0 1.5 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region CALCOCO1 PF07888.6 gi|307595011|ref|YP_003901328.1| - 0.15 10.3 0.1 1.6 6.9 0.0 2.0 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like IncA PF04156.9 gi|307595011|ref|YP_003901328.1| - 0.2 11.2 0.0 0.2 11.2 0.0 4.6 5 0 0 5 5 4 0 IncA protein Apolipoprotein PF01442.13 gi|307595011|ref|YP_003901328.1| - 0.23 10.9 0.0 2.2 7.7 0.0 2.4 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain CBS PF00571.23 gi|307595012|ref|YP_003901329.1| - 6.3e-35 118.6 8.5 3.2e-19 68.4 1.0 2.2 2 0 0 2 2 2 2 CBS domain DUF1150 PF06620.6 gi|307595012|ref|YP_003901329.1| - 0.0052 16.5 0.3 0.42 10.4 0.0 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF1150) Robl_LC7 PF03259.12 gi|307595012|ref|YP_003901329.1| - 0.0082 15.6 0.6 0.53 9.8 0.0 2.6 1 1 0 2 2 2 1 Roadblock/LC7 domain DUF3659 PF12396.3 gi|307595012|ref|YP_003901329.1| - 0.0092 15.6 0.7 3.5 7.3 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF3659) IF3_N PF05198.11 gi|307595012|ref|YP_003901329.1| - 0.012 15.4 1.6 2.3 8.2 0.0 3.1 1 1 2 3 3 3 0 Translation initiation factor IF-3, N-terminal domain DUF2117 PF09890.4 gi|307595012|ref|YP_003901329.1| - 0.014 14.6 3.0 0.016 14.4 2.1 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2117) Orthopox_F6 PF06601.7 gi|307595012|ref|YP_003901329.1| - 0.017 14.9 0.1 0.049 13.5 0.1 1.8 1 0 0 1 1 1 0 Orthopoxvirus F6 protein Translat_reg PF01818.12 gi|307595012|ref|YP_003901329.1| - 0.044 13.3 0.4 0.3 10.6 0.0 2.0 1 1 1 2 2 2 0 Bacteriophage translational regulator Cache_3 PF14827.1 gi|307595012|ref|YP_003901329.1| - 0.053 13.4 1.9 0.3 10.9 0.3 2.4 1 1 0 2 2 2 0 Sensory domain of two-component sensor kinase GTP_cyclohydro2 PF00925.15 gi|307595012|ref|YP_003901329.1| - 0.068 12.4 0.1 0.45 9.7 0.0 1.9 1 1 1 2 2 2 0 GTP cyclohydrolase II HTH_15 PF12324.3 gi|307595012|ref|YP_003901329.1| - 0.26 10.9 2.5 2 8.1 0.1 2.6 3 1 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase DUF340 PF03956.8 gi|307595013|ref|YP_003901330.1| - 8.9e-44 149.0 19.2 8.9e-44 149.0 13.3 2.1 2 0 0 2 2 2 1 Membrane protein of unknown function (DUF340) DUF1049 PF06305.6 gi|307595013|ref|YP_003901330.1| - 2.7 7.5 0.0 2.7 7.5 0.0 4.3 5 1 0 5 5 5 0 Protein of unknown function (DUF1049) Rad51 PF08423.6 gi|307595014|ref|YP_003901331.1| - 5.5e-73 245.0 0.0 6.6e-73 244.7 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|307595014|ref|YP_003901331.1| - 8e-14 51.4 0.1 1.2e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|307595014|ref|YP_003901331.1| - 2e-10 40.1 0.0 3.1e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|307595014|ref|YP_003901331.1| - 8.1e-10 38.7 0.1 2.4e-09 37.2 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|307595014|ref|YP_003901331.1| - 9.1e-05 22.4 0.0 0.00033 20.6 0.0 2.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4332) HHH PF00633.18 gi|307595014|ref|YP_003901331.1| - 0.00051 19.5 0.1 0.0029 17.2 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|307595014|ref|YP_003901331.1| - 0.0063 16.4 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus AAA_24 PF13479.1 gi|307595014|ref|YP_003901331.1| - 0.027 14.0 0.4 0.076 12.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|307595014|ref|YP_003901331.1| - 0.04 14.2 0.1 0.094 13.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|307595014|ref|YP_003901331.1| - 0.066 13.5 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter IMS_HHH PF11798.3 gi|307595014|ref|YP_003901331.1| - 0.072 13.1 0.1 0.17 11.9 0.1 1.7 1 0 0 1 1 1 0 IMS family HHH motif HTH_15 PF12324.3 gi|307595014|ref|YP_003901331.1| - 0.08 12.5 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Sigma70_r3 PF04539.11 gi|307595014|ref|YP_003901331.1| - 0.093 12.6 0.0 0.23 11.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 TfoX_C PF04994.8 gi|307595014|ref|YP_003901331.1| - 0.098 12.5 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain TGS PF02824.16 gi|307595015|ref|YP_003901332.1| - 2.8e-18 65.4 0.0 5.6e-18 64.5 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|307595015|ref|YP_003901332.1| - 1.2e-10 41.3 0.2 1.1e-09 38.2 0.1 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|307595015|ref|YP_003901332.1| - 7e-06 25.3 0.4 4.6e-05 22.7 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|307595015|ref|YP_003901332.1| - 4.3e-05 23.0 0.1 2.5 7.5 0.0 3.2 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|307595015|ref|YP_003901332.1| - 4.8e-05 23.8 0.0 0.00017 22.0 0.0 1.8 2 0 0 2 2 2 1 Miro-like protein Dynamin_N PF00350.18 gi|307595015|ref|YP_003901332.1| - 0.0011 18.8 0.1 0.018 14.8 0.0 2.2 2 0 0 2 2 2 1 Dynamin family Ras PF00071.17 gi|307595015|ref|YP_003901332.1| - 0.0063 15.9 0.0 2.9 7.2 0.0 2.3 2 0 0 2 2 2 2 Ras family AAA_28 PF13521.1 gi|307595015|ref|YP_003901332.1| - 0.012 15.5 0.0 0.075 12.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|307595015|ref|YP_003901332.1| - 0.022 14.6 0.0 0.29 11.0 0.0 2.5 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|307595015|ref|YP_003901332.1| - 0.022 14.1 0.5 1.5 8.1 0.3 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF3954 PF13128.1 gi|307595015|ref|YP_003901332.1| - 0.023 14.0 6.3 0.21 11.0 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3954) AAA_21 PF13304.1 gi|307595015|ref|YP_003901332.1| - 0.028 14.3 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|307595015|ref|YP_003901332.1| - 0.033 14.4 0.1 0.2 11.9 0.0 2.1 1 1 1 2 2 2 0 ABC transporter YchF-GTPase_C PF06071.8 gi|307595015|ref|YP_003901332.1| - 0.034 13.9 0.1 1.5 8.6 0.1 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF933) Arch_ATPase PF01637.13 gi|307595015|ref|YP_003901332.1| - 0.041 13.5 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase PduV-EutP PF10662.4 gi|307595015|ref|YP_003901332.1| - 0.042 13.3 0.0 6.6 6.2 0.0 2.6 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.1 gi|307595015|ref|YP_003901332.1| - 0.083 12.8 0.0 0.22 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|307595015|ref|YP_003901332.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain CesA PF11439.3 gi|307595016|ref|YP_003901333.1| - 0.039 13.8 0.9 0.22 11.4 0.0 2.3 1 1 1 2 2 2 0 Type III secretion system filament chaperone CesA YmgB PF10798.3 gi|307595016|ref|YP_003901333.1| - 0.064 13.0 1.3 2.8 7.8 0.1 3.0 3 0 0 3 3 3 0 Biofilm development protein YmgB/AriR DUF632 PF04782.7 gi|307595016|ref|YP_003901333.1| - 0.14 11.2 0.6 0.24 10.4 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF632) AAA PF00004.24 gi|307595017|ref|YP_003901334.1| - 1.7e-17 63.8 0.0 7.1e-17 61.8 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|307595017|ref|YP_003901334.1| - 1.8e-14 53.7 0.0 4e-10 39.5 0.1 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|307595017|ref|YP_003901334.1| - 1.5e-11 44.0 0.0 4.3e-11 42.6 0.0 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_22 PF13401.1 gi|307595017|ref|YP_003901334.1| - 8.6e-10 38.8 0.0 0.00053 20.1 0.0 2.6 1 1 1 2 2 2 2 AAA domain Rad17 PF03215.10 gi|307595017|ref|YP_003901334.1| - 1.4e-08 33.9 0.0 0.00072 18.3 0.0 2.1 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|307595017|ref|YP_003901334.1| - 1.5e-08 34.0 0.0 2.6e-08 33.2 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|307595017|ref|YP_003901334.1| - 9.7e-08 31.9 0.0 1.6e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307595017|ref|YP_003901334.1| - 1.7e-06 28.1 0.0 0.0013 18.7 0.0 2.8 1 1 2 3 3 3 1 AAA ATPase domain AAA_25 PF13481.1 gi|307595017|ref|YP_003901334.1| - 2.1e-06 27.2 0.1 7.4e-06 25.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|307595017|ref|YP_003901334.1| - 7.6e-06 25.5 0.0 2.3e-05 24.0 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|307595017|ref|YP_003901334.1| - 9.1e-06 26.0 0.0 0.00015 22.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|307595017|ref|YP_003901334.1| - 1.1e-05 24.6 0.0 0.00028 20.1 0.0 2.2 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|307595017|ref|YP_003901334.1| - 1.3e-05 24.6 0.0 2.4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|307595017|ref|YP_003901334.1| - 3.5e-05 22.7 0.0 0.0018 17.0 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus AAA_5 PF07728.9 gi|307595017|ref|YP_003901334.1| - 5.2e-05 22.9 0.1 0.00019 21.1 0.0 2.0 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|307595017|ref|YP_003901334.1| - 5.7e-05 22.7 0.0 9.1e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|307595017|ref|YP_003901334.1| - 9e-05 21.7 0.0 0.044 12.9 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_17 PF13207.1 gi|307595017|ref|YP_003901334.1| - 0.00035 21.3 0.0 0.0015 19.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|307595017|ref|YP_003901334.1| - 0.0013 18.3 0.0 0.0029 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|307595017|ref|YP_003901334.1| - 0.0023 17.4 0.2 0.3 10.4 0.0 2.6 1 1 0 3 3 3 1 AAA-like domain AAA_11 PF13086.1 gi|307595017|ref|YP_003901334.1| - 0.0024 17.4 0.0 0.012 15.1 0.0 1.7 1 1 1 2 2 2 1 AAA domain PEPCK_ATP PF01293.15 gi|307595017|ref|YP_003901334.1| - 0.0039 15.7 0.0 0.0058 15.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase ArgK PF03308.11 gi|307595017|ref|YP_003901334.1| - 0.0043 15.8 2.1 0.034 12.9 0.1 2.9 3 1 1 4 4 4 1 ArgK protein Arch_ATPase PF01637.13 gi|307595017|ref|YP_003901334.1| - 0.0056 16.4 0.0 0.05 13.2 0.0 2.1 1 1 1 2 2 2 1 Archaeal ATPase DEAD PF00270.24 gi|307595017|ref|YP_003901334.1| - 0.0062 16.0 0.1 0.2 11.1 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_28 PF13521.1 gi|307595017|ref|YP_003901334.1| - 0.0073 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|307595017|ref|YP_003901334.1| - 0.0092 15.8 0.0 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|307595017|ref|YP_003901334.1| - 0.01 15.4 0.1 0.15 11.6 0.1 2.5 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|307595017|ref|YP_003901334.1| - 0.016 15.3 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ResIII PF04851.10 gi|307595017|ref|YP_003901334.1| - 0.019 14.7 0.0 0.11 12.3 0.0 1.9 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|307595017|ref|YP_003901334.1| - 0.033 13.0 0.0 0.079 11.8 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|307595017|ref|YP_003901334.1| - 0.035 13.0 0.0 0.18 10.7 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|307595017|ref|YP_003901334.1| - 0.044 13.3 0.0 0.065 12.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MCM PF00493.18 gi|307595017|ref|YP_003901334.1| - 0.047 12.5 0.0 0.092 11.5 0.0 1.4 1 0 0 1 1 1 0 MCM2/3/5 family DNA_pol3_delta PF06144.8 gi|307595017|ref|YP_003901334.1| - 0.049 13.1 0.0 0.077 12.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase III, delta subunit Sigma54_activat PF00158.21 gi|307595017|ref|YP_003901334.1| - 0.057 12.8 0.0 4.6 6.6 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|307595017|ref|YP_003901334.1| - 0.066 12.6 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|307595017|ref|YP_003901334.1| - 0.068 12.8 0.0 0.84 9.3 0.0 2.5 1 1 0 2 2 2 0 NTPase DUF815 PF05673.8 gi|307595017|ref|YP_003901334.1| - 0.073 11.9 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_29 PF13555.1 gi|307595017|ref|YP_003901334.1| - 0.1 12.1 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Parvo_NS1 PF01057.12 gi|307595017|ref|YP_003901334.1| - 0.11 11.3 0.0 0.28 10.0 0.0 1.7 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 SNF2_N PF00176.18 gi|307595017|ref|YP_003901334.1| - 0.11 11.2 0.0 1.9 7.1 0.0 2.1 1 1 0 2 2 2 0 SNF2 family N-terminal domain tRNA_lig_kinase PF08303.6 gi|307595017|ref|YP_003901334.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 tRNA ligase kinase domain NB-ARC PF00931.17 gi|307595017|ref|YP_003901334.1| - 0.15 10.9 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.7 gi|307595017|ref|YP_003901334.1| - 0.15 11.7 0.0 1.7 8.3 0.0 2.2 1 1 0 1 1 1 0 NACHT domain TFIIB PF00382.14 gi|307595018|ref|YP_003901335.1| - 2.6e-37 126.4 3.0 1e-17 63.7 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|307595018|ref|YP_003901335.1| - 3.8e-17 61.3 0.3 6.2e-17 60.6 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|307595018|ref|YP_003901335.1| - 1.3e-05 24.7 0.3 0.0084 15.6 0.1 2.3 2 0 0 2 2 2 2 Cyclin, N-terminal domain Ribosomal_S27e PF01667.12 gi|307595018|ref|YP_003901335.1| - 4.6e-05 22.8 1.2 8.9e-05 21.9 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.1 gi|307595018|ref|YP_003901335.1| - 0.00043 20.5 0.3 0.00099 19.3 0.2 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar RRN7 PF11781.3 gi|307595018|ref|YP_003901335.1| - 0.0014 18.0 0.6 0.0025 17.2 0.4 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Sigma70_r4 PF04545.11 gi|307595018|ref|YP_003901335.1| - 0.0049 16.1 0.3 0.15 11.4 0.1 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 Zn_Tnp_IS1595 PF12760.2 gi|307595018|ref|YP_003901335.1| - 0.016 14.9 1.5 0.4 10.5 1.5 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cyclin_C PF02984.14 gi|307595018|ref|YP_003901335.1| - 0.042 13.7 0.3 8.1 6.4 0.0 2.7 3 0 0 3 3 3 0 Cyclin, C-terminal domain DUF1936 PF09151.5 gi|307595018|ref|YP_003901335.1| - 0.058 12.9 0.1 0.89 9.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Prim_Zn_Ribbon PF08273.7 gi|307595018|ref|YP_003901335.1| - 0.073 13.1 0.3 0.15 12.1 0.2 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.1 gi|307595018|ref|YP_003901335.1| - 0.077 12.5 2.1 5.1 6.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|307595018|ref|YP_003901335.1| - 0.078 12.8 0.2 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|307595018|ref|YP_003901335.1| - 0.13 11.4 4.2 0.58 9.4 3.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain FYDLN_acid PF09538.5 gi|307595018|ref|YP_003901335.1| - 0.15 12.6 0.0 0.28 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-CCHC_4 PF14392.1 gi|307595018|ref|YP_003901335.1| - 0.41 10.3 1.8 1.1 8.9 0.5 2.4 2 1 0 2 2 2 0 Zinc knuckle HIT PF01230.18 gi|307595019|ref|YP_003901336.1| - 0.00031 21.2 0.1 0.00044 20.7 0.1 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|307595019|ref|YP_003901336.1| - 0.0013 18.3 1.0 0.0024 17.5 0.7 1.5 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|307595019|ref|YP_003901336.1| - 0.0022 18.2 0.3 0.0031 17.7 0.2 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Ribosomal_L13e PF01294.13 gi|307595022|ref|YP_003901339.1| - 2.1e-08 33.8 1.2 3.9e-08 32.9 0.8 1.6 1 1 0 1 1 1 1 Ribosomal protein L13e Ribosomal_L15e PF00827.12 gi|307595022|ref|YP_003901339.1| - 0.00019 20.9 0.8 0.00033 20.2 0.3 1.6 2 0 0 2 2 2 1 Ribosomal L15 HAD_2 PF13419.1 gi|307595023|ref|YP_003901340.1| - 3.4e-21 76.2 0.0 4.3e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|307595023|ref|YP_003901340.1| - 9.3e-06 26.2 0.0 9.4e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|307595023|ref|YP_003901340.1| - 0.0086 15.9 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|307595023|ref|YP_003901340.1| - 0.013 15.2 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like RNA_binding PF01877.12 gi|307595024|ref|YP_003901341.1| - 4.7e-25 87.9 0.1 5.6e-25 87.6 0.1 1.1 1 0 0 1 1 1 1 RNA binding Cas_APE2256 PF09651.5 gi|307595024|ref|YP_003901341.1| - 0.15 11.7 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) Pribosyltran_N PF13793.1 gi|307595025|ref|YP_003901342.1| - 2.6e-22 78.7 0.0 3.8e-19 68.5 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|307595025|ref|YP_003901342.1| - 1.4e-12 47.4 0.2 5.3e-12 45.5 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|307595025|ref|YP_003901342.1| - 5e-11 42.6 0.4 9.6e-11 41.7 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|307595025|ref|YP_003901342.1| - 0.00024 20.3 0.0 0.00046 19.4 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase T2SF PF00482.18 gi|307595026|ref|YP_003901343.1| - 3.1e-10 40.0 5.5 1.3e-06 28.2 0.0 3.8 3 1 0 3 3 3 2 Type II secretion system (T2SS), protein F Prok-RING_1 PF14446.1 gi|307595027|ref|YP_003901344.1| - 4.7e-05 23.0 10.3 6.4e-05 22.5 7.1 1.3 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.7 gi|307595027|ref|YP_003901344.1| - 0.00088 18.9 11.8 0.0061 16.2 0.7 3.0 2 1 1 3 3 3 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|307595027|ref|YP_003901344.1| - 0.0012 18.6 6.6 0.18 11.6 3.5 2.6 1 1 1 2 2 2 2 Double zinc ribbon zf-RING_5 PF14634.1 gi|307595027|ref|YP_003901344.1| - 0.0094 15.6 5.9 0.092 12.4 4.1 2.0 1 1 0 1 1 1 1 zinc-RING finger domain zf-P11 PF03854.9 gi|307595027|ref|YP_003901344.1| - 0.036 13.5 8.1 0.056 12.9 5.6 1.4 1 1 0 1 1 1 0 P-11 zinc finger zf-C3HC4_3 PF13920.1 gi|307595027|ref|YP_003901344.1| - 0.05 13.2 6.0 0.24 11.0 4.2 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NinF PF05810.7 gi|307595027|ref|YP_003901344.1| - 0.056 13.2 1.9 0.21 11.4 1.3 1.8 1 1 0 1 1 1 0 NinF protein A2L_zn_ribbon PF08792.5 gi|307595027|ref|YP_003901344.1| - 0.09 12.2 7.9 0.071 12.5 3.5 2.1 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-AN1 PF01428.11 gi|307595027|ref|YP_003901344.1| - 0.097 12.5 5.3 0.19 11.6 3.6 1.6 1 1 0 1 1 1 0 AN1-like Zinc finger PhnA_Zn_Ribbon PF08274.7 gi|307595027|ref|YP_003901344.1| - 0.16 11.7 6.0 1.4 8.7 0.0 2.7 3 1 0 3 3 3 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|307595027|ref|YP_003901344.1| - 0.19 11.4 4.4 0.7 9.5 3.1 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|307595027|ref|YP_003901344.1| - 0.21 11.3 4.5 0.25 11.1 3.1 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Nudix_N_2 PF14803.1 gi|307595027|ref|YP_003901344.1| - 0.24 11.1 10.3 1.1 8.9 0.8 3.1 2 1 1 3 3 3 0 Nudix N-terminal DUF4428 PF14471.1 gi|307595027|ref|YP_003901344.1| - 0.43 10.3 7.9 17 5.2 5.5 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) C1_3 PF07649.7 gi|307595027|ref|YP_003901344.1| - 0.45 10.5 14.7 0.86 9.6 7.0 2.3 1 1 1 2 2 2 0 C1-like domain zinc-ribbons_6 PF07191.7 gi|307595027|ref|YP_003901344.1| - 0.5 10.1 6.0 1.9 8.3 4.2 2.0 1 1 0 1 1 1 0 zinc-ribbons zf-RING_2 PF13639.1 gi|307595027|ref|YP_003901344.1| - 0.78 9.6 6.6 1.1 9.1 4.6 1.2 1 0 0 1 1 1 0 Ring finger domain ADK_lid PF05191.9 gi|307595027|ref|YP_003901344.1| - 0.8 9.4 7.7 5.4 6.7 0.0 3.3 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|307595027|ref|YP_003901344.1| - 0.86 8.8 13.2 4.2 6.7 6.0 3.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF1272 PF06906.6 gi|307595027|ref|YP_003901344.1| - 1 9.2 7.4 1.7 8.5 5.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C3HC4_2 PF13923.1 gi|307595027|ref|YP_003901344.1| - 1.1 9.3 10.4 15 5.7 7.3 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-HIT PF04438.11 gi|307595027|ref|YP_003901344.1| - 1.2 8.8 17.9 6.1 6.5 6.8 3.0 1 1 1 2 2 2 0 HIT zinc finger zf-B_box PF00643.19 gi|307595027|ref|YP_003901344.1| - 1.2 9.0 8.6 7.3 6.5 6.4 2.0 1 1 0 1 1 1 0 B-box zinc finger C1_4 PF07975.7 gi|307595027|ref|YP_003901344.1| - 2.1 8.4 8.8 5.7 7.0 6.1 1.8 1 1 0 1 1 1 0 TFIIH C1-like domain zf-ISL3 PF14690.1 gi|307595027|ref|YP_003901344.1| - 2.7 8.0 13.6 9.5 6.3 0.2 3.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|307595027|ref|YP_003901344.1| - 4.5 7.1 13.0 4.4e+02 0.7 9.1 2.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|307595027|ref|YP_003901344.1| - 4.7 7.2 11.3 8.5 6.4 2.1 3.2 1 1 1 2 2 2 0 Zinc ribbon domain DUF1035 PF06281.7 gi|307595028|ref|YP_003901345.1| - 0.076 12.8 0.7 0.12 12.1 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1035) Adenosine_kin PF04008.9 gi|307595029|ref|YP_003901346.1| - 1.4e-72 242.2 0.1 1.6e-72 242.0 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase T2SE PF00437.15 gi|307595032|ref|YP_003901349.1| - 7.4e-42 143.1 0.0 1.1e-41 142.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|307595032|ref|YP_003901349.1| - 0.00071 19.8 0.0 0.0062 16.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|307595032|ref|YP_003901349.1| - 0.0024 18.6 0.0 0.021 15.6 0.0 2.5 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|307595032|ref|YP_003901349.1| - 0.0029 16.7 0.0 0.0046 16.0 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|307595032|ref|YP_003901349.1| - 0.012 15.1 0.1 0.043 13.3 0.1 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|307595032|ref|YP_003901349.1| - 0.012 15.6 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|307595032|ref|YP_003901349.1| - 0.012 15.4 0.0 0.035 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|307595032|ref|YP_003901349.1| - 0.026 14.8 1.4 0.055 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|307595032|ref|YP_003901349.1| - 0.029 14.0 0.0 0.058 13.0 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_22 PF13401.1 gi|307595032|ref|YP_003901349.1| - 0.031 14.4 0.0 0.068 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|307595032|ref|YP_003901349.1| - 0.035 14.3 0.0 0.087 13.1 0.0 1.8 1 1 0 1 1 1 0 ABC transporter UPF0079 PF02367.12 gi|307595032|ref|YP_003901349.1| - 0.084 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PduV-EutP PF10662.4 gi|307595032|ref|YP_003901349.1| - 0.09 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.24 gi|307595032|ref|YP_003901349.1| - 0.091 12.9 0.0 0.17 12.0 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Lung_7-TM_R PF06814.8 gi|307595033|ref|YP_003901350.1| - 0.0071 15.3 0.4 0.0095 14.9 0.3 1.1 1 0 0 1 1 1 1 Lung seven transmembrane receptor DUF4425 PF14466.1 gi|307595033|ref|YP_003901350.1| - 0.022 14.8 0.6 0.035 14.2 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4425) UPF0182 PF03699.8 gi|307595033|ref|YP_003901350.1| - 0.026 12.5 1.1 0.032 12.1 0.8 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) LTD PF00932.14 gi|307595033|ref|YP_003901350.1| - 0.029 14.4 0.4 0.042 13.9 0.3 1.4 1 0 0 1 1 1 0 Lamin Tail Domain NVEALA PF14055.1 gi|307595033|ref|YP_003901350.1| - 0.18 11.5 1.1 0.41 10.3 0.7 1.5 1 0 0 1 1 1 0 NVEALA protein DUF1628 PF07790.6 gi|307595033|ref|YP_003901350.1| - 0.21 12.3 5.8 0.13 12.9 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) LTD PF00932.14 gi|307595034|ref|YP_003901351.1| - 0.014 15.4 0.2 0.019 15.0 0.1 1.3 1 0 0 1 1 1 0 Lamin Tail Domain WSS_VP PF12175.3 gi|307595034|ref|YP_003901351.1| - 0.054 12.5 1.2 0.062 12.3 0.9 1.2 1 0 0 1 1 1 0 White spot syndrome virus structural envelope protein VP Ribosomal_S5_C PF03719.10 gi|307595035|ref|YP_003901352.1| - 2.5e-24 84.3 0.1 4.3e-24 83.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|307595035|ref|YP_003901352.1| - 1.1e-22 79.4 3.2 1.9e-22 78.7 2.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.15 gi|307595036|ref|YP_003901353.1| - 6.2e-17 60.9 0.0 9.9e-17 60.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|307595037|ref|YP_003901354.1| - 2.7e-34 118.3 0.9 3.4e-34 117.9 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 FeoC PF09012.5 gi|307595037|ref|YP_003901354.1| - 0.026 14.2 0.1 0.087 12.5 0.0 1.8 2 0 0 2 2 2 0 FeoC like transcriptional regulator TrmB PF01978.14 gi|307595037|ref|YP_003901354.1| - 0.038 13.6 0.0 0.078 12.6 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|307595037|ref|YP_003901354.1| - 0.051 13.4 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|307595037|ref|YP_003901354.1| - 0.093 12.4 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|307595037|ref|YP_003901354.1| - 0.12 12.4 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator SecY PF00344.15 gi|307595038|ref|YP_003901355.1| - 4.4e-72 242.8 31.2 5.7e-72 242.5 21.6 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|307595038|ref|YP_003901355.1| - 0.00051 19.4 1.3 0.0016 17.9 0.9 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p Methyltrn_RNA_3 PF02598.12 gi|307595040|ref|YP_003901357.1| - 1.5e-56 191.8 0.0 1.8e-56 191.6 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SPOUT_MTase_2 PF14419.1 gi|307595040|ref|YP_003901357.1| - 0.034 13.3 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP Ribosomal_L3 PF00297.17 gi|307595041|ref|YP_003901358.1| - 5.7e-59 199.6 0.0 6.6e-59 199.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 QCR10 PF09796.4 gi|307595041|ref|YP_003901358.1| - 0.031 13.9 0.2 0.064 12.9 0.1 1.4 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) Ribosomal_L4 PF00573.17 gi|307595042|ref|YP_003901359.1| - 2.2e-38 131.5 0.1 2.6e-38 131.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|307595043|ref|YP_003901360.1| - 3.7e-17 62.0 2.6 6.1e-17 61.3 1.8 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 NAD_binding_7 PF13241.1 gi|307595043|ref|YP_003901360.1| - 0.027 14.6 0.1 0.03 14.5 0.1 1.0 1 0 0 1 1 1 0 Putative NAD(P)-binding eIF-6 PF01912.13 gi|307595043|ref|YP_003901360.1| - 0.033 13.2 0.1 0.039 13.0 0.1 1.1 1 0 0 1 1 1 0 eIF-6 family Nucleocap_ssRNA PF11128.3 gi|307595043|ref|YP_003901360.1| - 0.045 13.2 0.1 0.053 12.9 0.1 1.0 1 0 0 1 1 1 0 Plant viral coat protein nucleocapsid eIF3_N PF09440.5 gi|307595043|ref|YP_003901360.1| - 0.073 13.2 0.1 0.093 12.8 0.1 1.1 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain DUF45 PF01863.12 gi|307595043|ref|YP_003901360.1| - 0.08 12.7 0.1 0.085 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF45 TusA PF01206.12 gi|307595043|ref|YP_003901360.1| - 0.087 12.4 0.2 0.11 12.0 0.1 1.1 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF1447 PF07288.6 gi|307595043|ref|YP_003901360.1| - 0.096 12.4 1.1 0.12 12.1 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1447) HTH_33 PF13592.1 gi|307595043|ref|YP_003901360.1| - 0.13 11.8 0.0 2.4 7.7 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix AnfO_nitrog PF09582.5 gi|307595044|ref|YP_003901361.1| - 0.04 13.0 0.4 0.055 12.5 0.3 1.2 1 0 0 1 1 1 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) DUF1682 PF07946.9 gi|307595044|ref|YP_003901361.1| - 0.05 12.4 6.9 0.051 12.4 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) DnaB_2 PF07261.6 gi|307595044|ref|YP_003901361.1| - 0.075 12.6 0.3 0.68 9.5 0.0 2.1 2 0 0 2 2 2 0 Replication initiation and membrane attachment Hepatitis_core PF00906.15 gi|307595044|ref|YP_003901361.1| - 0.15 11.6 3.1 0.22 11.1 2.1 1.3 1 0 0 1 1 1 0 Hepatitis core antigen Casc1 PF12366.3 gi|307595044|ref|YP_003901361.1| - 0.15 11.4 2.5 0.21 11.0 1.7 1.1 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 RNase_H2-Ydr279 PF09468.5 gi|307595044|ref|YP_003901361.1| - 0.31 10.1 8.3 0.33 10.1 5.8 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) BLVR PF06375.6 gi|307595044|ref|YP_003901361.1| - 0.33 10.7 13.8 0.49 10.1 9.6 1.3 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) Peptidase_S49_N PF08496.5 gi|307595044|ref|YP_003901361.1| - 0.69 9.6 7.5 0.41 10.4 3.8 1.7 2 0 0 2 2 2 0 Peptidase family S49 N-terminal Ribosomal_L18_c PF14204.1 gi|307595044|ref|YP_003901361.1| - 1.6 9.3 10.1 0.4 11.2 4.1 1.9 2 0 0 2 2 2 0 Ribosomal L18 C-terminal region SMN PF06003.7 gi|307595044|ref|YP_003901361.1| - 4.7 6.2 10.1 6.6 5.7 7.0 1.1 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) Thioredoxin_3 PF13192.1 gi|307595045|ref|YP_003901362.1| - 4.5e-15 55.2 2.5 1.4e-09 37.6 0.4 2.8 3 0 0 3 3 3 2 Thioredoxin domain Thioredoxin PF00085.15 gi|307595045|ref|YP_003901362.1| - 2e-08 33.8 0.0 2.1e-05 24.1 0.0 2.6 2 1 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|307595045|ref|YP_003901362.1| - 0.00019 21.6 0.9 0.22 11.7 0.4 3.2 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_9 PF14595.1 gi|307595045|ref|YP_003901362.1| - 0.0025 17.3 0.0 0.63 9.6 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_8 PF13905.1 gi|307595045|ref|YP_003901362.1| - 0.017 15.2 0.2 1.1 9.3 0.0 3.1 2 1 0 2 2 2 0 Thioredoxin-like TrbC_Ftype PF09673.5 gi|307595045|ref|YP_003901362.1| - 0.025 14.1 0.0 0.57 9.8 0.0 2.3 2 0 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein RNA_pol_Rpb5_C PF01191.14 gi|307595045|ref|YP_003901362.1| - 0.03 13.9 0.8 0.065 12.8 0.0 2.0 3 0 0 3 3 3 0 RNA polymerase Rpb5, C-terminal domain HyaE PF07449.6 gi|307595045|ref|YP_003901362.1| - 0.077 12.9 0.0 0.23 11.3 0.0 1.7 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE Glutaredoxin PF00462.19 gi|307595045|ref|YP_003901362.1| - 0.68 9.9 6.8 0.54 10.2 0.3 3.5 4 1 0 4 4 4 0 Glutaredoxin Ham1p_like PF01725.11 gi|307595046|ref|YP_003901363.1| - 2.4e-45 154.2 0.0 2.8e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family CGI-121 PF08617.5 gi|307595047|ref|YP_003901364.1| - 0.005 16.5 1.3 0.0072 16.0 0.3 1.7 2 0 0 2 2 2 1 Kinase binding protein CGI-121 EB1_binding PF05937.6 gi|307595047|ref|YP_003901364.1| - 0.036 14.4 0.5 0.051 13.9 0.3 1.3 1 0 0 1 1 1 0 EB-1 Binding Domain zf-ribbon_3 PF13248.1 gi|307595048|ref|YP_003901365.1| - 5.4e-05 22.2 2.2 0.0001 21.4 1.5 1.5 1 1 0 1 1 1 1 zinc-ribbon domain RRN7 PF11781.3 gi|307595048|ref|YP_003901365.1| - 0.00019 20.8 0.2 0.00026 20.4 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 zinc_ribbon_2 PF13240.1 gi|307595048|ref|YP_003901365.1| - 0.0068 15.8 3.0 0.051 13.0 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|307595048|ref|YP_003901365.1| - 0.013 15.3 0.3 0.018 14.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|307595048|ref|YP_003901365.1| - 0.013 15.1 0.2 0.019 14.6 0.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.6 gi|307595048|ref|YP_003901365.1| - 0.015 15.1 0.2 0.017 14.9 0.1 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Herpes_UL49_1 PF03117.9 gi|307595048|ref|YP_003901365.1| - 0.02 14.0 1.7 0.24 10.4 0.0 2.0 1 1 1 2 2 2 0 UL49 family Nudix_N_2 PF14803.1 gi|307595048|ref|YP_003901365.1| - 0.062 12.9 0.9 6.6 6.5 0.0 2.1 2 0 0 2 2 2 0 Nudix N-terminal Auto_anti-p27 PF06677.7 gi|307595048|ref|YP_003901365.1| - 0.088 12.5 0.6 0.13 12.0 0.4 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_RNApol_7kD PF03604.8 gi|307595048|ref|YP_003901365.1| - 0.24 10.9 2.4 1.3 8.5 1.7 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|307595048|ref|YP_003901365.1| - 0.32 10.8 1.9 5.8 6.8 0.0 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|307595048|ref|YP_003901365.1| - 0.76 9.1 3.3 4.7 6.6 2.3 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|307595048|ref|YP_003901365.1| - 1.3 8.4 3.9 7.2 6.0 2.6 2.0 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Zn_ribbon_recom PF13408.1 gi|307595048|ref|YP_003901365.1| - 4.5 7.6 5.8 9.3 6.6 0.4 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DEAD PF00270.24 gi|307595049|ref|YP_003901366.1| - 4.3e-31 107.6 0.0 3.9e-30 104.5 0.0 2.6 3 0 0 3 3 3 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|307595049|ref|YP_003901366.1| - 2.4e-30 105.6 0.9 1.1e-29 103.4 0.1 2.4 3 0 0 3 3 3 1 DEAD/H associated Helicase_C PF00271.26 gi|307595049|ref|YP_003901366.1| - 9.4e-16 57.4 0.2 1.7e-14 53.4 0.1 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|307595049|ref|YP_003901366.1| - 3.8e-07 30.1 0.0 1e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HypA PF01155.14 gi|307595049|ref|YP_003901366.1| - 0.042 13.5 0.1 0.095 12.3 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA_19 PF13245.1 gi|307595049|ref|YP_003901366.1| - 0.1 12.3 0.0 0.4 10.4 0.0 2.1 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|307595049|ref|YP_003901366.1| - 0.17 11.3 0.3 17 4.7 0.0 3.2 3 0 0 3 3 3 0 AAA-like domain zf-ribbon_3 PF13248.1 gi|307595049|ref|YP_003901366.1| - 0.64 9.3 3.0 2 7.7 2.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|307595049|ref|YP_003901366.1| - 2.7 7.8 6.8 0.43 10.4 0.3 3.0 3 1 0 3 3 3 0 Transposase zinc-ribbon domain Hexapep PF00132.19 gi|307595050|ref|YP_003901367.1| - 2.8e-08 32.9 2.3 0.082 12.4 0.0 4.3 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_4 PF13562.1 gi|307595050|ref|YP_003901367.1| - 5.1e-05 22.9 0.0 9.4e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Sugar nucleotidyl transferase CYTH PF01928.16 gi|307595051|ref|YP_003901368.1| - 1.2e-37 129.3 3.6 1.4e-37 129.2 2.5 1.0 1 0 0 1 1 1 1 CYTH domain AA_permease_2 PF13520.1 gi|307595052|ref|YP_003901369.1| - 2.9e-25 88.6 69.8 3.8e-25 88.3 48.4 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|307595052|ref|YP_003901369.1| - 0.0022 16.4 65.2 0.0026 16.1 45.2 1.0 1 0 0 1 1 1 1 Amino acid permease Lysis_S PF04971.7 gi|307595052|ref|YP_003901369.1| - 0.07 12.8 15.4 0.56 9.9 1.7 4.4 3 2 1 4 4 4 0 Lysis protein S SBP_bac_11 PF13531.1 gi|307595053|ref|YP_003901370.1| - 5.2e-32 111.3 0.6 6.4e-32 111.0 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|307595054|ref|YP_003901371.1| - 1.2e-17 64.0 20.3 1.2e-17 64.0 14.1 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|307595055|ref|YP_003901372.1| - 5.5e-32 110.9 0.0 8.1e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307595055|ref|YP_003901372.1| - 5.7e-10 39.6 0.2 6.5e-05 23.0 0.1 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|307595055|ref|YP_003901372.1| - 1.4e-06 27.6 0.0 0.00024 20.4 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TrkA_C PF02080.16 gi|307595055|ref|YP_003901372.1| - 8.8e-05 22.0 0.0 0.068 12.7 0.0 2.5 2 0 0 2 2 2 1 TrkA-C domain TOBE_2 PF08402.5 gi|307595055|ref|YP_003901372.1| - 9.4e-05 22.3 0.2 0.00023 21.0 0.1 1.7 1 0 0 1 1 1 1 TOBE domain AAA_10 PF12846.2 gi|307595055|ref|YP_003901372.1| - 0.00027 20.4 0.2 0.0026 17.2 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|307595055|ref|YP_003901372.1| - 0.0012 19.1 0.2 0.0021 18.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|307595055|ref|YP_003901372.1| - 0.0018 18.1 0.0 0.018 14.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|307595055|ref|YP_003901372.1| - 0.0021 17.9 0.0 0.017 15.0 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|307595055|ref|YP_003901372.1| - 0.0022 17.4 0.1 0.0047 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SE PF00437.15 gi|307595055|ref|YP_003901372.1| - 0.0026 16.7 0.0 0.0037 16.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|307595055|ref|YP_003901372.1| - 0.0045 16.4 0.0 0.13 11.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|307595055|ref|YP_003901372.1| - 0.0047 16.1 0.0 0.0069 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|307595055|ref|YP_003901372.1| - 0.0059 16.3 0.0 0.0095 15.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_30 PF13604.1 gi|307595055|ref|YP_003901372.1| - 0.012 15.1 0.0 0.03 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|307595055|ref|YP_003901372.1| - 0.013 15.6 1.6 0.15 12.2 1.1 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|307595055|ref|YP_003901372.1| - 0.013 15.4 0.1 0.021 14.7 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|307595055|ref|YP_003901372.1| - 0.014 16.2 0.6 0.048 14.4 0.3 2.1 1 1 1 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|307595055|ref|YP_003901372.1| - 0.017 13.7 0.1 7.6 5.0 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|307595055|ref|YP_003901372.1| - 0.029 14.1 0.1 0.1 12.3 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain NACHT PF05729.7 gi|307595055|ref|YP_003901372.1| - 0.035 13.7 0.4 0.064 12.9 0.1 1.6 1 1 0 1 1 1 0 NACHT domain TOBE PF03459.12 gi|307595055|ref|YP_003901372.1| - 0.049 13.7 0.2 0.34 11.0 0.1 2.3 2 0 0 2 2 2 0 TOBE domain AAA_14 PF13173.1 gi|307595055|ref|YP_003901372.1| - 0.05 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|307595055|ref|YP_003901372.1| - 0.059 11.8 0.0 0.14 10.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|307595055|ref|YP_003901372.1| - 0.061 13.2 0.1 0.86 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|307595055|ref|YP_003901372.1| - 0.069 12.8 0.1 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.1 gi|307595055|ref|YP_003901372.1| - 0.073 12.1 0.0 7.3 5.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain DUF87 PF01935.12 gi|307595055|ref|YP_003901372.1| - 0.073 12.8 0.6 0.15 11.8 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|307595055|ref|YP_003901372.1| - 0.083 12.8 0.2 0.14 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain G-alpha PF00503.15 gi|307595055|ref|YP_003901372.1| - 0.096 11.3 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit MobB PF03205.9 gi|307595055|ref|YP_003901372.1| - 0.1 12.3 0.2 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|307595055|ref|YP_003901372.1| - 0.12 12.6 1.6 0.74 10.1 1.1 2.3 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|307595055|ref|YP_003901372.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|307595055|ref|YP_003901372.1| - 0.16 11.3 0.2 0.28 10.6 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|307595055|ref|YP_003901372.1| - 0.16 12.1 0.5 1 9.5 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Malic_M PF03949.10 gi|307595056|ref|YP_003901373.1| - 2e-68 230.7 1.5 2.5e-68 230.3 1.0 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|307595056|ref|YP_003901373.1| - 5.1e-25 88.0 0.0 6.1e-18 65.0 0.0 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain ThiF PF00899.16 gi|307595056|ref|YP_003901373.1| - 0.056 13.2 0.2 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 ThiF family Shikimate_DH PF01488.15 gi|307595056|ref|YP_003901373.1| - 0.095 12.7 0.2 5.8 7.0 0.2 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase UPF0147 PF03685.8 gi|307595057|ref|YP_003901374.1| - 1.1e-30 105.3 0.1 1.4e-30 104.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) Shikimate_DH PF01488.15 gi|307595057|ref|YP_003901374.1| - 0.045 13.8 0.0 0.059 13.4 0.0 1.1 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TFIIB PF00382.14 gi|307595057|ref|YP_003901374.1| - 0.13 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Transcription factor TFIIB repeat HTH_24 PF13412.1 gi|307595058|ref|YP_003901375.1| - 1.5e-14 53.0 1.8 1.5e-14 53.0 1.3 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|307595058|ref|YP_003901375.1| - 1.2e-12 47.3 0.0 1.9e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|307595058|ref|YP_003901375.1| - 2.6e-12 46.0 1.6 2.7e-12 46.0 0.1 1.9 3 0 0 3 3 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|307595058|ref|YP_003901375.1| - 3.4e-08 32.9 0.7 3.4e-08 32.9 0.5 2.0 2 1 0 2 2 1 1 HTH domain HTH_20 PF12840.2 gi|307595058|ref|YP_003901375.1| - 8.1e-07 28.7 0.0 1.8e-06 27.6 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.17 gi|307595058|ref|YP_003901375.1| - 9.6e-06 25.2 0.7 1.7e-05 24.4 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_30 PF13556.1 gi|307595058|ref|YP_003901375.1| - 5.8e-05 22.6 0.0 9.4e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain TrmB PF01978.14 gi|307595058|ref|YP_003901375.1| - 0.00016 21.3 0.3 0.00036 20.1 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|307595058|ref|YP_003901375.1| - 0.00021 20.8 1.0 0.00027 20.5 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|307595058|ref|YP_003901375.1| - 0.00021 21.1 0.0 0.00037 20.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.6 gi|307595058|ref|YP_003901375.1| - 0.00023 20.8 1.9 0.0004 20.0 1.4 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.7 gi|307595058|ref|YP_003901375.1| - 0.00024 20.5 0.1 0.00046 19.6 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|307595058|ref|YP_003901375.1| - 0.00027 20.5 0.0 0.00048 19.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|307595058|ref|YP_003901375.1| - 0.00032 20.2 0.0 0.0012 18.4 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|307595058|ref|YP_003901375.1| - 0.00033 20.1 0.0 0.0006 19.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.7 gi|307595058|ref|YP_003901375.1| - 0.00044 19.7 0.0 0.0011 18.5 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_17 PF12728.2 gi|307595058|ref|YP_003901375.1| - 0.0015 18.7 0.0 0.003 17.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_WhiA PF02650.9 gi|307595058|ref|YP_003901375.1| - 0.0016 18.7 0.3 0.0045 17.3 0.0 1.8 2 0 0 2 2 1 1 WhiA C-terminal HTH domain Mga PF05043.8 gi|307595058|ref|YP_003901375.1| - 0.002 18.3 0.1 0.0043 17.2 0.1 1.5 2 0 0 2 2 1 1 Mga helix-turn-helix domain HTH_36 PF13730.1 gi|307595058|ref|YP_003901375.1| - 0.0035 17.4 0.1 0.0066 16.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.14 gi|307595058|ref|YP_003901375.1| - 0.0038 16.7 0.3 0.0093 15.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_27 PF13463.1 gi|307595058|ref|YP_003901375.1| - 0.0042 17.3 0.1 0.018 15.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|307595058|ref|YP_003901375.1| - 0.0048 16.7 0.1 0.0093 15.7 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_38 PF13936.1 gi|307595058|ref|YP_003901375.1| - 0.006 16.1 0.1 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DDRGK PF09756.4 gi|307595058|ref|YP_003901375.1| - 0.0091 15.4 0.2 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 DDRGK domain HTH_19 PF12844.2 gi|307595058|ref|YP_003901375.1| - 0.01 15.9 0.2 0.036 14.1 0.2 1.8 2 1 0 2 2 2 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|307595058|ref|YP_003901375.1| - 0.021 14.3 0.5 0.08 12.4 0.1 1.9 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_Tnp_IS630 PF01710.11 gi|307595058|ref|YP_003901375.1| - 0.023 14.3 0.1 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Transposase HTH_22 PF13309.1 gi|307595058|ref|YP_003901375.1| - 0.024 14.3 0.0 0.066 12.9 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.1 gi|307595058|ref|YP_003901375.1| - 0.027 14.2 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|307595058|ref|YP_003901375.1| - 0.036 13.9 0.1 0.099 12.5 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain FUR PF01475.14 gi|307595058|ref|YP_003901375.1| - 0.038 13.9 0.1 0.12 12.3 0.0 1.8 2 0 0 2 2 2 0 Ferric uptake regulator family UPF0122 PF04297.9 gi|307595058|ref|YP_003901375.1| - 0.046 13.7 0.1 0.094 12.7 0.0 1.6 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_34 PF13601.1 gi|307595058|ref|YP_003901375.1| - 0.051 13.6 0.0 0.089 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_6 PF01418.12 gi|307595058|ref|YP_003901375.1| - 0.054 13.2 0.1 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_Tnp_Tc3_2 PF01498.13 gi|307595058|ref|YP_003901375.1| - 0.057 13.4 0.3 0.12 12.4 0.0 1.6 2 0 0 2 2 1 0 Transposase SpoIIID PF12116.3 gi|307595058|ref|YP_003901375.1| - 0.075 12.9 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Stage III sporulation protein D NUMOD1 PF07453.8 gi|307595058|ref|YP_003901375.1| - 0.089 12.6 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_1 PF00126.22 gi|307595058|ref|YP_003901375.1| - 0.089 12.5 0.0 0.2 11.3 0.0 1.5 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DNA_pol_B PF00136.16 gi|307595059|ref|YP_003901376.1| - 3.6e-89 299.7 0.0 4.9e-89 299.2 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|307595059|ref|YP_003901376.1| - 1.3e-38 132.7 0.1 8.3e-38 130.0 0.1 2.1 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|307595059|ref|YP_003901376.1| - 7.1e-13 48.6 0.0 1.2e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|307595059|ref|YP_003901376.1| - 6.8e-11 42.0 0.0 1.3e-10 41.1 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RPN7 PF10602.4 gi|307595059|ref|YP_003901376.1| - 0.079 12.3 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 26S proteasome subunit RPN7 DNA_pol_B_2 PF03175.8 gi|307595059|ref|YP_003901376.1| - 0.18 10.4 1.2 0.28 9.7 0.1 1.7 2 0 0 2 2 2 0 DNA polymerase type B, organellar and viral Toprim_4 PF13662.1 gi|307595060|ref|YP_003901377.1| - 6e-07 29.3 0.1 1.5e-06 28.1 0.0 1.8 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|307595060|ref|YP_003901377.1| - 0.0043 16.9 0.8 0.017 15.0 0.2 2.4 2 1 0 2 2 2 1 Toprim domain PAT1 PF09770.4 gi|307595060|ref|YP_003901377.1| - 0.03 12.5 21.7 0.041 12.1 15.1 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 Suf PF05843.9 gi|307595060|ref|YP_003901377.1| - 0.98 9.0 5.0 1.7 8.2 3.5 1.4 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) HXXSHH PF07586.6 gi|307595060|ref|YP_003901377.1| - 4.6 6.0 5.5 16 4.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1552) DUF883 PF05957.8 gi|307595060|ref|YP_003901377.1| - 4.6 7.7 6.5 28 5.2 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Peptidase_M24 PF00557.19 gi|307595061|ref|YP_003901378.1| - 1.1e-42 146.0 0.0 1.3e-42 145.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Prenyltransf PF01255.14 gi|307595062|ref|YP_003901379.1| - 9.7e-76 253.7 0.0 1.1e-75 253.6 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF4518 PF15008.1 gi|307595062|ref|YP_003901379.1| - 0.046 12.7 0.4 0.094 11.7 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4518) Epimerase PF01370.16 gi|307595063|ref|YP_003901380.1| - 1.2e-21 77.2 0.0 2.1e-21 76.4 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|307595063|ref|YP_003901380.1| - 8.2e-05 21.6 0.0 0.00023 20.1 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|307595063|ref|YP_003901380.1| - 0.00086 18.2 0.0 0.0015 17.4 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|307595063|ref|YP_003901380.1| - 0.0017 18.0 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 KR domain adh_short PF00106.20 gi|307595063|ref|YP_003901380.1| - 0.014 15.3 0.0 0.038 13.9 0.0 1.7 1 1 0 1 1 1 0 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|307595063|ref|YP_003901380.1| - 0.032 13.6 0.0 0.06 12.7 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_transf_28 PF03033.15 gi|307595063|ref|YP_003901380.1| - 0.042 13.6 0.0 0.19 11.4 0.0 2.1 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain tRNA-Thr_ED PF08915.6 gi|307595064|ref|YP_003901381.1| - 3.8e-49 166.1 0.0 6.9e-49 165.3 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|307595064|ref|YP_003901381.1| - 5.2e-22 77.5 0.5 1.9e-21 75.7 0.4 2.1 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|307595064|ref|YP_003901381.1| - 1.6e-15 57.0 1.6 4.3e-15 55.7 1.1 1.7 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) INT_SG_DDX_CT_C PF15300.1 gi|307595064|ref|YP_003901381.1| - 0.082 12.3 0.2 0.28 10.6 0.1 2.0 2 0 0 2 2 2 0 INTS6/SAGE1/DDX26B/CT45 C-terminus HGTP_anticodon2 PF12745.2 gi|307595064|ref|YP_003901381.1| - 0.19 10.8 0.0 0.33 10.0 0.0 1.3 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs DUF981 PF06168.6 gi|307595065|ref|YP_003901382.1| - 4.7e-47 160.2 15.4 7.8e-47 159.5 10.7 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF981) DUF650 PF04894.7 gi|307595066|ref|YP_003901383.1| - 2.8e-77 259.8 0.0 3.7e-77 259.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|307595066|ref|YP_003901383.1| - 8.1e-32 109.1 0.0 8.6e-30 102.5 0.0 2.3 2 0 0 2 2 2 2 Archaeal protein of unknown function (DUF651) UbiA PF01040.13 gi|307595067|ref|YP_003901384.1| - 2.7e-27 95.6 27.8 3.4e-27 95.2 19.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Bac_export_3 PF01313.14 gi|307595067|ref|YP_003901384.1| - 0.17 11.6 0.1 0.17 11.6 0.1 3.7 5 0 0 5 5 5 0 Bacterial export proteins, family 3 DUF87 PF01935.12 gi|307595068|ref|YP_003901385.1| - 2.5e-36 125.6 0.0 3.6e-36 125.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|307595068|ref|YP_003901385.1| - 3.4e-18 66.1 0.0 3.1e-16 59.7 0.0 2.5 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|307595068|ref|YP_003901385.1| - 0.0006 19.3 0.1 0.025 14.0 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|307595068|ref|YP_003901385.1| - 0.013 13.9 0.0 1.4 7.2 0.0 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|307595068|ref|YP_003901385.1| - 0.015 13.9 0.0 0.24 9.9 0.0 2.5 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|307595068|ref|YP_003901385.1| - 0.044 13.2 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) T4SS-DNA_transf PF02534.9 gi|307595068|ref|YP_003901385.1| - 0.25 9.8 0.2 1.7 7.1 0.0 2.0 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer DUF2848 PF11010.3 gi|307595071|ref|YP_003901388.1| - 5.5e-61 205.4 0.0 6.6e-61 205.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2848) HrcA PF01628.16 gi|307595071|ref|YP_003901388.1| - 0.08 12.5 0.0 2.2 7.7 0.0 2.1 1 1 1 2 2 2 0 HrcA protein C terminal domain Apc4_WD40 PF12894.2 gi|307595072|ref|YP_003901389.1| - 0.036 13.5 0.0 0.068 12.6 0.0 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain Ribosomal_L37ae PF01780.14 gi|307595073|ref|YP_003901390.1| - 6.7e-32 109.2 4.0 7e-32 109.1 2.8 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family UPF0547 PF10571.4 gi|307595073|ref|YP_003901390.1| - 7e-05 22.4 1.0 0.00016 21.3 0.7 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|307595073|ref|YP_003901390.1| - 0.0015 18.2 3.0 0.0025 17.5 2.0 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|307595073|ref|YP_003901390.1| - 0.0021 17.6 0.3 0.0029 17.2 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|307595073|ref|YP_003901390.1| - 0.0037 17.1 0.3 0.0051 16.6 0.2 1.2 1 0 0 1 1 1 1 IBR domain zf-H2C2_2 PF13465.1 gi|307595073|ref|YP_003901390.1| - 0.0056 16.9 1.3 0.18 12.1 0.1 2.3 2 0 0 2 2 2 1 Zinc-finger double domain zf-ISL3 PF14690.1 gi|307595073|ref|YP_003901390.1| - 0.008 16.1 1.8 2.5 8.2 0.1 2.4 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.14 gi|307595073|ref|YP_003901390.1| - 0.008 15.8 0.1 0.011 15.4 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|307595073|ref|YP_003901390.1| - 0.0087 15.9 2.8 0.64 10.0 0.2 2.2 2 0 0 2 2 2 1 Zinc ribbon domain C1_1 PF00130.17 gi|307595073|ref|YP_003901390.1| - 0.027 14.1 1.6 0.042 13.5 1.1 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-TFIIB PF13453.1 gi|307595073|ref|YP_003901390.1| - 0.031 13.4 3.9 0.082 12.1 2.7 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.1 gi|307595073|ref|YP_003901390.1| - 0.032 13.8 4.1 1.1 8.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|307595073|ref|YP_003901390.1| - 0.036 13.9 2.8 0.9 9.4 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin zf-C2H2_4 PF13894.1 gi|307595073|ref|YP_003901390.1| - 0.036 14.3 2.4 0.69 10.3 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-LITAF-like PF10601.4 gi|307595073|ref|YP_003901390.1| - 0.045 13.6 0.7 0.41 10.5 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-ribbon_3 PF13248.1 gi|307595073|ref|YP_003901390.1| - 0.053 12.7 2.5 0.91 8.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|307595073|ref|YP_003901390.1| - 0.062 12.9 2.9 4.6 6.9 0.5 2.2 2 0 0 2 2 2 0 HIT zinc finger DUF2225 PF09986.4 gi|307595073|ref|YP_003901390.1| - 0.063 12.7 0.9 0.11 11.9 0.6 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF1610 PF07754.6 gi|307595073|ref|YP_003901390.1| - 0.066 13.3 3.2 1.2 9.3 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_4 PF13717.1 gi|307595073|ref|YP_003901390.1| - 0.078 12.6 4.7 1.5 8.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|307595073|ref|YP_003901390.1| - 0.091 12.5 2.7 4.3 7.2 2.6 2.0 1 1 1 2 2 2 0 Double zinc ribbon zf-RING_4 PF14570.1 gi|307595073|ref|YP_003901390.1| - 0.11 12.1 1.7 1.1 8.8 0.1 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-FPG_IleRS PF06827.9 gi|307595073|ref|YP_003901390.1| - 0.11 12.1 3.1 0.27 10.8 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Rep_fac-A_C PF08646.5 gi|307595073|ref|YP_003901390.1| - 0.15 11.7 1.0 0.27 10.9 0.7 1.5 1 1 0 1 1 1 0 Replication factor-A C terminal domain zinc_ribbon_2 PF13240.1 gi|307595073|ref|YP_003901390.1| - 0.22 11.0 5.5 1.1 8.8 3.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF4379 PF14311.1 gi|307595073|ref|YP_003901390.1| - 0.25 11.1 3.6 1.8 8.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zf-tcix PF14952.1 gi|307595073|ref|YP_003901390.1| - 0.29 10.4 0.2 0.29 10.4 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-RanBP PF00641.13 gi|307595073|ref|YP_003901390.1| - 0.49 9.5 2.7 1 8.5 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF2296 PF10058.4 gi|307595073|ref|YP_003901390.1| - 0.53 10.0 4.0 10 5.9 2.7 2.1 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2 PF00096.21 gi|307595073|ref|YP_003901390.1| - 0.6 10.5 3.6 1.3 9.4 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-MIZ PF02891.15 gi|307595073|ref|YP_003901390.1| - 1.1 8.8 5.3 7.8 6.1 0.4 2.3 1 1 1 2 2 2 0 MIZ/SP-RING zinc finger DUF1936 PF09151.5 gi|307595073|ref|YP_003901390.1| - 3.1 7.3 5.1 11 5.6 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) TF_Zn_Ribbon PF08271.7 gi|307595073|ref|YP_003901390.1| - 8.4 5.8 5.9 1e+02 2.3 4.1 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Brix PF04427.13 gi|307595074|ref|YP_003901391.1| - 3.2e-12 46.5 0.0 4.4e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Brix domain Bromodomain PF00439.20 gi|307595074|ref|YP_003901391.1| - 0.0043 16.9 0.0 0.0093 15.8 0.0 1.5 1 0 0 1 1 1 1 Bromodomain Pcc1 PF09341.5 gi|307595075|ref|YP_003901392.1| - 4.9e-06 26.4 0.0 5.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|307595076|ref|YP_003901393.1| - 3.9e-23 81.2 14.3 4.4e-23 81.0 9.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF3584 PF12128.3 gi|307595076|ref|YP_003901393.1| - 0.00041 17.8 4.8 0.00048 17.6 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|307595076|ref|YP_003901393.1| - 0.00061 19.6 10.7 0.014 15.2 0.6 2.1 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Enkurin PF13864.1 gi|307595076|ref|YP_003901393.1| - 0.0011 19.1 0.4 0.0011 19.1 0.3 2.4 2 1 0 2 2 2 1 Calmodulin-binding DMPK_coil PF08826.5 gi|307595076|ref|YP_003901393.1| - 0.0048 16.7 4.3 0.0048 16.7 3.0 2.7 2 1 0 2 2 2 1 DMPK coiled coil domain like Spc24 PF08286.6 gi|307595076|ref|YP_003901393.1| - 0.0086 15.7 5.2 0.9 9.2 0.1 2.1 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 Filament PF00038.16 gi|307595076|ref|YP_003901393.1| - 0.0099 15.3 6.2 0.46 9.9 0.6 2.0 2 0 0 2 2 2 2 Intermediate filament protein Tropomyosin_1 PF12718.2 gi|307595076|ref|YP_003901393.1| - 0.011 15.6 11.7 0.099 12.4 1.6 2.1 2 0 0 2 2 2 0 Tropomyosin like Prefoldin PF02996.12 gi|307595076|ref|YP_003901393.1| - 0.014 15.0 10.7 0.81 9.3 7.4 2.5 1 1 0 1 1 1 0 Prefoldin subunit DUF2203 PF09969.4 gi|307595076|ref|YP_003901393.1| - 0.014 15.6 5.5 0.17 12.1 0.3 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) NTR2 PF15458.1 gi|307595076|ref|YP_003901393.1| - 0.018 14.2 2.1 0.018 14.2 1.4 2.0 2 0 0 2 2 2 0 Nineteen complex-related protein 2 Baculo_PEP_C PF04513.7 gi|307595076|ref|YP_003901393.1| - 0.023 14.5 1.7 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.6 gi|307595076|ref|YP_003901393.1| - 0.024 13.2 12.7 0.42 9.2 9.1 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein MscS_porin PF12795.2 gi|307595076|ref|YP_003901393.1| - 0.034 13.4 15.1 0.067 12.5 0.7 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain TPR_MLP1_2 PF07926.7 gi|307595076|ref|YP_003901393.1| - 0.069 12.8 11.6 0.31 10.7 0.6 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein PAF-AH_p_II PF03403.8 gi|307595076|ref|YP_003901393.1| - 0.069 11.4 0.4 0.082 11.1 0.3 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II ADIP PF11559.3 gi|307595076|ref|YP_003901393.1| - 0.076 12.9 5.5 2.7 7.8 0.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding TMCO5 PF14992.1 gi|307595076|ref|YP_003901393.1| - 0.079 12.0 8.0 0.096 11.8 5.5 1.1 1 0 0 1 1 1 0 TMCO5 family Utp12 PF04003.7 gi|307595076|ref|YP_003901393.1| - 0.083 12.8 2.9 0.14 12.0 0.1 2.3 2 1 0 2 2 2 0 Dip2/Utp12 Family IDEAL PF08858.5 gi|307595076|ref|YP_003901393.1| - 0.1 12.1 0.7 0.1 12.1 0.5 2.8 3 0 0 3 3 2 0 IDEAL domain RasGAP_C PF03836.10 gi|307595076|ref|YP_003901393.1| - 0.11 12.1 7.9 0.15 11.7 1.3 2.0 1 1 1 2 2 2 0 RasGAP C-terminus EzrA PF06160.7 gi|307595076|ref|YP_003901393.1| - 0.12 10.5 7.1 0.17 10.0 4.9 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Laminin_I PF06008.9 gi|307595076|ref|YP_003901393.1| - 0.12 11.6 8.3 6.7 5.9 5.7 2.1 1 1 0 1 1 1 0 Laminin Domain I DUF832 PF05734.6 gi|307595076|ref|YP_003901393.1| - 0.12 11.5 0.6 0.15 11.2 0.4 1.1 1 0 0 1 1 1 0 Herpesvirus protein of unknown function (DUF832) RimK PF08443.6 gi|307595076|ref|YP_003901393.1| - 0.13 11.7 1.3 0.16 11.4 0.9 1.1 1 0 0 1 1 1 0 RimK-like ATP-grasp domain V_ATPase_I PF01496.14 gi|307595076|ref|YP_003901393.1| - 0.13 10.0 2.9 0.16 9.7 2.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Fmp27_WPPW PF10359.4 gi|307595076|ref|YP_003901393.1| - 0.15 10.4 4.7 0.18 10.1 3.3 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Fic_N PF13784.1 gi|307595076|ref|YP_003901393.1| - 0.15 11.9 1.0 0.29 11.0 0.1 1.8 2 0 0 2 2 2 0 Fic/DOC family N-terminal DUF4510 PF14971.1 gi|307595076|ref|YP_003901393.1| - 0.17 12.0 5.9 0.5 10.5 3.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4510) GAS PF13851.1 gi|307595076|ref|YP_003901393.1| - 0.17 11.0 13.2 0.34 10.0 9.1 1.4 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.17 gi|307595076|ref|YP_003901393.1| - 0.2 11.7 9.3 1.9 8.5 0.8 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.1 gi|307595076|ref|YP_003901393.1| - 0.2 11.5 10.0 0.35 10.8 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DHC_N2 PF08393.8 gi|307595076|ref|YP_003901393.1| - 0.22 9.9 6.3 0.15 10.5 1.2 2.0 1 1 1 2 2 2 0 Dynein heavy chain, N-terminal region 2 Snf7 PF03357.16 gi|307595076|ref|YP_003901393.1| - 0.22 10.8 8.6 0.69 9.2 1.2 2.0 1 1 1 2 2 2 0 Snf7 Prominin PF05478.6 gi|307595076|ref|YP_003901393.1| - 0.22 9.0 5.5 0.35 8.3 3.8 1.3 1 1 0 1 1 1 0 Prominin DUF4254 PF14063.1 gi|307595076|ref|YP_003901393.1| - 0.27 10.8 3.0 1.7 8.2 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4254) DUF3086 PF11285.3 gi|307595076|ref|YP_003901393.1| - 0.27 10.0 8.2 0.61 8.8 1.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) GvpL_GvpF PF06386.6 gi|307595076|ref|YP_003901393.1| - 0.3 10.6 2.4 0.73 9.3 1.4 1.6 1 1 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF DUF919 PF06034.6 gi|307595076|ref|YP_003901393.1| - 0.32 10.6 5.9 0.13 11.9 0.8 2.5 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) DUF3450 PF11932.3 gi|307595076|ref|YP_003901393.1| - 0.35 10.0 6.1 2.3 7.4 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) IncA PF04156.9 gi|307595076|ref|YP_003901393.1| - 0.38 10.3 16.6 8 6.0 11.5 2.0 1 1 0 1 1 1 0 IncA protein Occludin_ELL PF07303.8 gi|307595076|ref|YP_003901393.1| - 0.66 10.7 5.1 0.61 10.8 2.3 1.7 1 1 1 2 2 2 0 Occludin homology domain Cortex-I_coil PF09304.5 gi|307595076|ref|YP_003901393.1| - 0.75 9.8 15.2 3 7.9 3.7 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil DUF4140 PF13600.1 gi|307595076|ref|YP_003901393.1| - 0.84 10.1 10.6 3.5 8.1 0.8 2.7 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) LUC7 PF03194.10 gi|307595076|ref|YP_003901393.1| - 0.87 9.0 5.3 2.5 7.5 0.3 2.0 1 1 1 2 2 2 0 LUC7 N_terminus Mnd1 PF03962.10 gi|307595076|ref|YP_003901393.1| - 0.95 9.1 6.6 1.6 8.3 4.5 1.3 1 1 0 1 1 1 0 Mnd1 family WXG100 PF06013.7 gi|307595076|ref|YP_003901393.1| - 0.99 9.4 5.4 3 7.9 0.2 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF948 PF06103.6 gi|307595076|ref|YP_003901393.1| - 1.1 9.1 6.2 1.1 9.1 1.8 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|307595076|ref|YP_003901393.1| - 1.1 9.5 6.2 3.1 8.1 0.7 2.5 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein SPAM PF02090.10 gi|307595076|ref|YP_003901393.1| - 1.1 9.2 7.8 6.3 6.7 5.4 1.9 1 1 0 1 1 1 0 Salmonella surface presentation of antigen gene type M protein Striatin PF08232.7 gi|307595076|ref|YP_003901393.1| - 1.1 9.5 7.1 0.98 9.7 1.2 2.1 2 0 0 2 2 2 0 Striatin family Nsp1_C PF05064.8 gi|307595076|ref|YP_003901393.1| - 1.2 8.8 8.3 2.7 7.6 0.7 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region BLOC1_2 PF10046.4 gi|307595076|ref|YP_003901393.1| - 1.3 9.2 6.8 0.79 9.8 0.4 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DivIC PF04977.10 gi|307595076|ref|YP_003901393.1| - 1.4 8.4 14.8 1.1 8.7 2.1 2.4 2 1 0 2 2 2 0 Septum formation initiator COG2 PF06148.6 gi|307595076|ref|YP_003901393.1| - 1.6 8.5 8.3 2.2 8.1 1.6 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Ax_dynein_light PF10211.4 gi|307595076|ref|YP_003901393.1| - 2 8.2 10.6 1.4 8.7 1.4 2.0 2 0 0 2 2 2 0 Axonemal dynein light chain Atg14 PF10186.4 gi|307595076|ref|YP_003901393.1| - 2.1 7.2 7.9 3.3 6.5 5.5 1.3 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FlxA PF14282.1 gi|307595076|ref|YP_003901393.1| - 2.2 8.2 15.4 0.66 9.9 4.0 2.2 2 0 0 2 2 2 0 FlxA-like protein Fzo_mitofusin PF04799.8 gi|307595076|ref|YP_003901393.1| - 2.3 7.6 8.7 0.46 9.8 1.1 2.2 1 1 1 2 2 2 0 fzo-like conserved region DUF972 PF06156.8 gi|307595076|ref|YP_003901393.1| - 2.3 8.6 8.8 6.9 7.0 1.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Tropomyosin PF00261.15 gi|307595076|ref|YP_003901393.1| - 2.5 7.1 13.1 15 4.5 2.4 2.0 1 1 0 1 1 1 0 Tropomyosin TBPIP PF07106.8 gi|307595076|ref|YP_003901393.1| - 2.8 7.4 14.0 1.6 8.2 1.3 2.0 1 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spectrin PF00435.16 gi|307595076|ref|YP_003901393.1| - 2.9 8.2 8.7 6.4 7.1 2.9 2.6 1 1 1 2 2 2 0 Spectrin repeat Nup54 PF13874.1 gi|307595076|ref|YP_003901393.1| - 3.3 7.3 7.3 21 4.7 5.1 2.0 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Cep57_CLD_2 PF14197.1 gi|307595076|ref|YP_003901393.1| - 3.3 7.7 10.7 7.5 6.5 2.3 2.5 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 Phage_GP20 PF06810.6 gi|307595076|ref|YP_003901393.1| - 3.3 7.1 9.1 1.3 8.4 1.4 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 AAA_13 PF13166.1 gi|307595076|ref|YP_003901393.1| - 3.6 5.9 8.1 7.2 4.9 0.8 1.7 1 1 0 1 1 1 0 AAA domain DUF724 PF05266.9 gi|307595076|ref|YP_003901393.1| - 3.7 7.1 12.0 1.4e+02 2.0 8.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF724) EAP30 PF04157.11 gi|307595076|ref|YP_003901393.1| - 4.3 6.4 9.9 2.2 7.4 1.8 2.2 1 1 1 2 2 2 0 EAP30/Vps36 family Med4 PF10018.4 gi|307595076|ref|YP_003901393.1| - 4.8 6.5 9.4 7.5 5.9 0.5 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4559 PF15112.1 gi|307595076|ref|YP_003901393.1| - 4.9 6.2 7.9 19 4.2 5.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) ALIX_LYPXL_bnd PF13949.1 gi|307595076|ref|YP_003901393.1| - 5.4 5.8 12.4 33 3.3 8.4 1.8 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV Laminin_II PF06009.7 gi|307595076|ref|YP_003901393.1| - 5.5 6.7 9.7 25 4.6 6.7 1.8 1 1 0 1 1 1 0 Laminin Domain II Syntaxin-6_N PF09177.6 gi|307595076|ref|YP_003901393.1| - 5.7 7.4 7.7 7.4 7.0 0.6 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Syntaxin PF00804.20 gi|307595076|ref|YP_003901393.1| - 5.8 7.1 9.5 29 4.8 6.6 2.0 1 1 0 1 1 1 0 Syntaxin Wbp11 PF09429.5 gi|307595076|ref|YP_003901393.1| - 6.2 6.8 10.0 0.73 9.8 0.6 2.5 2 1 0 2 2 2 0 WW domain binding protein 11 Siah-Interact_N PF09032.6 gi|307595076|ref|YP_003901393.1| - 7.1 6.7 12.6 0.053 13.5 1.2 2.1 2 0 0 2 2 1 0 Siah interacting protein, N terminal PspA_IM30 PF04012.7 gi|307595076|ref|YP_003901393.1| - 7.4 5.8 12.4 58 2.9 8.5 1.9 1 1 0 1 1 1 0 PspA/IM30 family Viral_P18 PF04521.8 gi|307595076|ref|YP_003901393.1| - 7.9 5.9 12.5 6.9 6.1 2.5 2.7 1 1 2 3 3 3 0 ssRNA positive strand viral 18kD cysteine rich protein Cauli_AT PF03233.8 gi|307595076|ref|YP_003901393.1| - 9.6 5.8 10.5 3 7.5 0.9 2.1 1 1 1 2 2 2 0 Aphid transmission protein DUF3194 PF11419.3 gi|307595077|ref|YP_003901394.1| - 0.0023 18.0 2.6 0.006 16.7 1.5 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF3194) DHH PF01368.15 gi|307595078|ref|YP_003901395.1| - 1.3e-13 50.8 0.0 1.8e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|307595078|ref|YP_003901395.1| - 1e-09 37.9 0.1 2.8e-09 36.5 0.1 1.8 1 0 0 1 1 1 1 DHHA1 domain T2SE PF00437.15 gi|307595080|ref|YP_003901397.1| - 2.6e-51 174.1 0.0 3.7e-51 173.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|307595080|ref|YP_003901397.1| - 0.0017 17.8 0.0 0.004 16.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|307595080|ref|YP_003901397.1| - 0.003 17.8 0.0 0.0067 16.7 0.0 1.6 1 0 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|307595080|ref|YP_003901397.1| - 0.0069 16.8 0.0 0.017 15.5 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein AAA_16 PF13191.1 gi|307595080|ref|YP_003901397.1| - 0.009 16.0 0.0 0.029 14.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain PIF1 PF05970.9 gi|307595080|ref|YP_003901397.1| - 0.028 13.3 0.0 0.048 12.5 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase DUF87 PF01935.12 gi|307595080|ref|YP_003901397.1| - 0.056 13.2 0.1 0.58 9.9 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA_23 PF13476.1 gi|307595080|ref|YP_003901397.1| - 0.064 13.5 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|307595080|ref|YP_003901397.1| - 0.11 11.9 0.1 1 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|307595080|ref|YP_003901397.1| - 0.16 11.4 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF342 PF03961.8 gi|307595081|ref|YP_003901398.1| - 0.002 16.6 1.3 0.0021 16.5 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF342) DASH_Dad4 PF08650.5 gi|307595081|ref|YP_003901398.1| - 0.073 12.9 4.2 0.36 10.7 0.6 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad4 DUF948 PF06103.6 gi|307595081|ref|YP_003901398.1| - 0.075 12.9 0.3 0.83 9.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF3647 PF12363.3 gi|307595081|ref|YP_003901398.1| - 0.078 13.0 0.5 0.15 12.1 0.2 1.5 1 1 0 1 1 1 0 Phage protein DASH_Dad3 PF08656.5 gi|307595081|ref|YP_003901398.1| - 0.15 11.7 1.8 1.6 8.4 0.4 2.1 2 0 0 2 2 2 0 DASH complex subunit Dad3 SCHIP-1 PF10148.4 gi|307595081|ref|YP_003901398.1| - 0.2 11.0 2.9 0.31 10.4 0.3 1.9 1 1 1 2 2 2 0 Schwannomin-interacting protein 1 HR1 PF02185.11 gi|307595081|ref|YP_003901398.1| - 0.5 10.1 3.7 9 6.1 0.1 2.3 2 0 0 2 2 2 0 Hr1 repeat DASH_Dam1 PF08653.5 gi|307595081|ref|YP_003901398.1| - 0.56 10.0 3.2 1.3 8.8 0.3 2.1 2 0 0 2 2 2 0 DASH complex subunit Dam1 Dymeclin PF09742.4 gi|307595083|ref|YP_003901400.1| - 0.056 11.5 0.0 0.057 11.5 0.0 1.0 1 0 0 1 1 1 0 Dyggve-Melchior-Clausen syndrome protein DUF3919 PF13057.1 gi|307595084|ref|YP_003901401.1| - 0.062 12.7 5.4 0.078 12.4 3.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3919) DUF327 PF03885.8 gi|307595084|ref|YP_003901401.1| - 0.066 13.0 0.7 0.29 10.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF327) TENA_THI-4 PF03070.11 gi|307595085|ref|YP_003901402.1| - 0.066 12.9 0.2 0.14 11.8 0.0 1.6 2 0 0 2 2 2 0 TENA/THI-4/PQQC family LXG PF04740.7 gi|307595085|ref|YP_003901402.1| - 0.13 11.9 0.5 0.25 11.1 0.1 1.6 2 0 0 2 2 2 0 LXG domain of WXG superfamily Snapin_Pallidin PF14712.1 gi|307595086|ref|YP_003901403.1| - 0.033 14.4 0.8 1.6 9.1 0.0 2.2 2 0 0 2 2 2 0 Snapin/Pallidin Sec34 PF04136.10 gi|307595086|ref|YP_003901403.1| - 0.035 13.8 0.4 2.2 7.9 0.0 2.1 2 0 0 2 2 2 0 Sec34-like family Prefoldin_2 PF01920.15 gi|307595086|ref|YP_003901403.1| - 0.041 13.6 0.8 1.2 8.8 0.2 2.1 2 0 0 2 2 2 0 Prefoldin subunit Imm21 PF15569.1 gi|307595086|ref|YP_003901403.1| - 0.074 12.8 0.3 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 Immunity protein 21 GvpK PF05121.7 gi|307595086|ref|YP_003901403.1| - 0.1 12.4 0.1 0.3 10.9 0.1 1.8 2 0 0 2 2 2 0 Gas vesicle protein K DUF972 PF06156.8 gi|307595086|ref|YP_003901403.1| - 0.11 12.8 0.9 1.3 9.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) DUF217 PF02697.9 gi|307595088|ref|YP_003901405.1| - 0.0023 18.1 2.4 0.0029 17.8 1.7 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_3 PF12651.2 gi|307595088|ref|YP_003901405.1| - 0.022 14.4 0.8 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain Helicase_RecD PF05127.9 gi|307595089|ref|YP_003901406.1| - 6.5e-57 192.0 0.0 1.1e-56 191.3 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|307595089|ref|YP_003901406.1| - 5.6e-49 166.1 0.0 2.5e-48 164.0 0.0 1.9 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|307595089|ref|YP_003901406.1| - 4.5e-24 83.9 0.0 1.9e-23 81.9 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|307595089|ref|YP_003901406.1| - 3.4e-10 39.9 0.0 3.8e-08 33.3 0.0 2.5 2 0 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_1 PF00583.19 gi|307595089|ref|YP_003901406.1| - 6.6e-09 35.6 0.1 2.2e-07 30.8 0.0 2.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|307595089|ref|YP_003901406.1| - 2.2e-06 27.7 0.0 7.6e-06 26.0 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|307595089|ref|YP_003901406.1| - 0.0057 16.5 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|307595089|ref|YP_003901406.1| - 0.015 15.3 0.0 0.051 13.7 0.0 1.9 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA_16 PF13191.1 gi|307595089|ref|YP_003901406.1| - 0.027 14.4 0.0 0.35 10.8 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain FR47 PF08445.5 gi|307595089|ref|YP_003901406.1| - 0.042 13.6 0.1 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 FR47-like protein RHH_1 PF01402.16 gi|307595089|ref|YP_003901406.1| - 3.5 7.6 6.3 30 4.7 0.1 3.6 4 0 0 4 4 4 0 Ribbon-helix-helix protein, copG family Oxidored_q1 PF00361.15 gi|307595091|ref|YP_003901408.1| - 3.5e-37 128.1 31.8 3.5e-37 128.1 22.0 2.0 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|307595092|ref|YP_003901409.1| - 9e-34 116.9 24.4 6.2e-32 110.9 14.2 4.2 5 1 0 5 5 5 2 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF162 PF02589.10 gi|307595093|ref|YP_003901410.1| - 1.7e-47 161.3 0.0 2.3e-47 160.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|307595093|ref|YP_003901410.1| - 9.1e-11 41.6 2.6 1.5e-10 40.9 1.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307595093|ref|YP_003901410.1| - 3.3e-08 33.7 2.5 2e-07 31.2 2.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307595093|ref|YP_003901410.1| - 5.8e-07 29.8 2.8 0.021 15.2 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307595093|ref|YP_003901410.1| - 8.6e-07 29.2 4.4 1.7e-06 28.3 3.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307595093|ref|YP_003901410.1| - 3.7e-06 27.0 1.9 9.9e-06 25.7 1.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307595093|ref|YP_003901410.1| - 2.6e-05 23.8 5.4 0.00013 21.6 4.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307595093|ref|YP_003901410.1| - 6.5e-05 22.6 6.8 0.0044 16.8 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|307595093|ref|YP_003901410.1| - 0.00012 21.5 8.1 0.0024 17.4 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|307595093|ref|YP_003901410.1| - 0.0066 17.1 5.4 0.018 15.7 3.8 1.8 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|307595093|ref|YP_003901410.1| - 0.012 15.5 9.2 0.089 12.7 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|307595093|ref|YP_003901410.1| - 0.021 15.3 11.7 0.5 11.0 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|307595093|ref|YP_003901410.1| - 0.025 14.2 1.4 0.1 12.2 0.0 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.2 gi|307595093|ref|YP_003901410.1| - 0.078 13.3 7.8 0.53 10.7 1.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307595093|ref|YP_003901410.1| - 0.5 10.2 5.8 0.79 9.6 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307595093|ref|YP_003901410.1| - 3.4 8.1 5.7 5.8 7.3 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain AIRS_C PF02769.17 gi|307595094|ref|YP_003901411.1| - 6e-22 78.2 0.2 8.7e-22 77.7 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|307595094|ref|YP_003901411.1| - 7.4e-10 38.9 0.4 2e-09 37.5 0.1 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain PALP PF00291.20 gi|307595095|ref|YP_003901412.1| - 1.1e-85 287.6 5.3 1.3e-85 287.3 3.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|307595095|ref|YP_003901412.1| - 6.8e-09 35.0 0.2 3e-08 32.9 0.0 2.1 2 0 0 2 2 2 1 ACT domain ADH_zinc_N PF00107.21 gi|307595095|ref|YP_003901412.1| - 0.00062 19.3 1.3 0.057 12.9 0.0 3.1 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ACT_6 PF13740.1 gi|307595095|ref|YP_003901412.1| - 0.0042 16.7 0.0 0.014 15.0 0.0 1.9 1 1 0 1 1 1 1 ACT domain DegT_DnrJ_EryC1 PF01041.12 gi|307595095|ref|YP_003901412.1| - 0.019 14.0 0.2 0.03 13.3 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Lactamase_B_3 PF13483.1 gi|307595095|ref|YP_003901412.1| - 0.044 13.4 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain M20_dimer PF07687.9 gi|307595095|ref|YP_003901412.1| - 0.064 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Peptidase dimerisation domain Radical_SAM PF04055.16 gi|307595095|ref|YP_003901412.1| - 0.15 12.1 0.0 4.4 7.4 0.0 2.8 3 0 0 3 3 3 0 Radical SAM superfamily Ribonuc_L-PSP PF01042.16 gi|307595096|ref|YP_003901413.1| - 7.9e-41 138.6 0.0 8.8e-41 138.4 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Exo5 PF09810.4 gi|307595097|ref|YP_003901414.1| - 2.5e-12 46.6 1.1 7e-05 22.1 0.0 2.8 2 1 0 3 3 3 2 Exonuclease V - a 5' deoxyribonuclease PDDEXK_1 PF12705.2 gi|307595097|ref|YP_003901414.1| - 1.4e-05 24.6 0.0 0.00018 20.9 0.0 2.0 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|307595097|ref|YP_003901414.1| - 3.4e-05 23.7 0.2 0.0006 19.7 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function DUF83 HSDR_N PF04313.9 gi|307595097|ref|YP_003901414.1| - 0.0062 16.3 0.1 0.018 14.8 0.0 1.6 1 1 1 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DivIVA PF05103.8 gi|307595098|ref|YP_003901415.1| - 0.044 13.8 0.5 0.081 12.9 0.3 1.6 1 0 0 1 1 1 0 DivIVA protein MoeA_N PF03453.12 gi|307595099|ref|YP_003901416.1| - 1.1e-48 164.6 0.0 1.7e-48 164.0 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|307595099|ref|YP_003901416.1| - 1e-29 102.8 0.0 1.7e-29 102.0 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|307595099|ref|YP_003901416.1| - 4.8e-16 58.4 0.1 1.2e-15 57.1 0.1 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) NurA PF09376.5 gi|307595101|ref|YP_003901418.1| - 1.4e-21 77.1 5.7 1e-20 74.2 4.0 2.1 1 1 0 1 1 1 1 NurA domain DUF1628 PF07790.6 gi|307595102|ref|YP_003901419.1| - 0.069 13.9 0.2 0.17 12.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) Thioredoxin_3 PF13192.1 gi|307595103|ref|YP_003901420.1| - 2e-09 37.1 0.0 6.4e-09 35.5 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|307595103|ref|YP_003901420.1| - 5.8e-08 32.5 0.0 2.8e-07 30.4 0.0 2.2 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|307595103|ref|YP_003901420.1| - 0.00064 19.7 0.0 0.016 15.1 0.0 2.6 2 0 0 2 2 2 1 Thioredoxin DUF234 PF03008.9 gi|307595103|ref|YP_003901420.1| - 0.26 11.4 2.6 1.1 9.4 0.2 2.6 2 1 1 3 3 3 0 Archaea bacterial proteins of unknown function Radical_SAM PF04055.16 gi|307595104|ref|YP_003901421.1| - 3.3e-15 56.6 0.0 8.5e-15 55.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.2 gi|307595104|ref|YP_003901421.1| - 3.1e-05 23.8 0.0 8.9e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif CMV_US PF08001.6 gi|307595104|ref|YP_003901421.1| - 0.096 11.7 0.5 0.16 11.0 0.3 1.2 1 0 0 1 1 1 0 CMV US PG_binding_1 PF01471.13 gi|307595104|ref|YP_003901421.1| - 0.14 12.1 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Putative peptidoglycan binding domain T2SK PF03934.8 gi|307595104|ref|YP_003901421.1| - 0.23 10.5 0.0 0.4 9.7 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K HEPN PF05168.9 gi|307595105|ref|YP_003901422.1| - 6.1e-35 119.6 0.5 6.8e-35 119.5 0.3 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|307595105|ref|YP_003901422.1| - 2e-05 24.4 2.0 3.6e-05 23.5 1.4 1.8 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|307595106|ref|YP_003901423.1| - 6.5e-08 32.7 0.1 7.9e-08 32.5 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|307595106|ref|YP_003901423.1| - 0.0024 17.4 0.0 0.0087 15.6 0.0 1.8 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 P5CR_dimer PF14748.1 gi|307595107|ref|YP_003901424.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation Baculo_PEP_C PF04513.7 gi|307595109|ref|YP_003901426.1| - 2e-05 24.4 0.0 2.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Prefoldin_2 PF01920.15 gi|307595109|ref|YP_003901426.1| - 0.00045 19.9 0.8 0.00075 19.2 0.2 1.7 2 0 0 2 2 1 1 Prefoldin subunit DUF1664 PF07889.7 gi|307595109|ref|YP_003901426.1| - 0.003 17.3 0.1 0.011 15.5 0.0 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1664) FliD_C PF07195.7 gi|307595109|ref|YP_003901426.1| - 0.0056 16.0 0.0 0.0081 15.4 0.0 1.3 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus TMF_DNA_bd PF12329.3 gi|307595109|ref|YP_003901426.1| - 0.0083 15.9 1.0 0.021 14.6 0.7 1.7 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding DUF1192 PF06698.6 gi|307595109|ref|YP_003901426.1| - 0.014 15.1 0.9 8.9 6.2 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1192) HSBP1 PF06825.7 gi|307595109|ref|YP_003901426.1| - 0.019 14.4 5.3 0.031 13.8 1.0 2.6 2 1 0 2 2 2 0 Heat shock factor binding protein 1 ADIP PF11559.3 gi|307595109|ref|YP_003901426.1| - 0.027 14.3 0.1 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4164 PF13747.1 gi|307595109|ref|YP_003901426.1| - 0.028 14.5 1.7 0.028 14.5 1.2 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4164) SF-assemblin PF06705.6 gi|307595109|ref|YP_003901426.1| - 0.028 13.5 0.9 0.035 13.2 0.2 1.4 2 0 0 2 2 2 0 SF-assemblin/beta giardin Med4 PF10018.4 gi|307595109|ref|YP_003901426.1| - 0.031 13.6 0.1 0.035 13.5 0.1 1.2 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 FlaC_arch PF05377.6 gi|307595109|ref|YP_003901426.1| - 0.034 14.0 3.2 0.12 12.2 1.0 2.8 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Fib_alpha PF08702.5 gi|307595109|ref|YP_003901426.1| - 0.035 14.2 0.3 0.068 13.2 0.1 1.5 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Tropomyosin PF00261.15 gi|307595109|ref|YP_003901426.1| - 0.039 13.0 0.3 0.039 13.0 0.2 1.6 2 0 0 2 2 2 0 Tropomyosin DUF4446 PF14584.1 gi|307595109|ref|YP_003901426.1| - 0.039 13.7 0.2 0.083 12.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Tektin PF03148.9 gi|307595109|ref|YP_003901426.1| - 0.047 12.2 0.1 0.07 11.6 0.1 1.2 1 0 0 1 1 1 0 Tektin family bZIP_2 PF07716.10 gi|307595109|ref|YP_003901426.1| - 0.053 13.3 1.8 0.14 12.0 1.3 1.8 1 0 0 1 1 1 0 Basic region leucine zipper GP41 PF00517.12 gi|307595109|ref|YP_003901426.1| - 0.059 12.9 0.1 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Retroviral envelope protein DUF3552 PF12072.3 gi|307595109|ref|YP_003901426.1| - 0.063 12.4 0.2 0.11 11.7 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Tropomyosin_1 PF12718.2 gi|307595109|ref|YP_003901426.1| - 0.089 12.6 0.1 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Tropomyosin like IncA PF04156.9 gi|307595109|ref|YP_003901426.1| - 0.11 12.1 2.0 0.12 11.9 0.7 1.7 1 1 1 2 2 2 0 IncA protein DUF4140 PF13600.1 gi|307595109|ref|YP_003901426.1| - 0.11 12.9 0.1 0.24 11.8 0.1 1.5 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) XhlA PF10779.4 gi|307595109|ref|YP_003901426.1| - 0.13 12.1 0.3 0.13 12.1 0.2 2.1 2 0 0 2 2 2 0 Haemolysin XhlA DUF904 PF06005.7 gi|307595109|ref|YP_003901426.1| - 0.24 11.7 3.1 0.24 11.7 0.7 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF904) DUF4315 PF14193.1 gi|307595109|ref|YP_003901426.1| - 0.34 10.8 3.0 12 5.9 0.1 3.0 2 2 1 3 3 3 0 Domain of unknown function (DUF4315) Osmo_CC PF08946.5 gi|307595109|ref|YP_003901426.1| - 0.35 10.9 1.9 0.49 10.4 0.3 2.0 2 1 0 2 2 1 0 Osmosensory transporter coiled coil BRI3BP PF14965.1 gi|307595109|ref|YP_003901426.1| - 0.51 9.6 2.1 3.7 6.8 0.7 2.7 2 1 0 2 2 2 0 Negative regulator of p53/TP53 FYVE_2 PF02318.11 gi|307595109|ref|YP_003901426.1| - 0.61 10.0 2.8 4.2 7.3 0.1 2.2 2 0 0 2 2 2 0 FYVE-type zinc finger TBPIP PF07106.8 gi|307595109|ref|YP_003901426.1| - 3.6 7.0 6.1 0.59 9.6 0.2 2.2 3 0 0 3 3 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MarC PF01914.12 gi|307595111|ref|YP_003901428.1| - 1.1e-36 125.9 16.8 1.2e-36 125.7 11.6 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein HPIH PF13323.1 gi|307595111|ref|YP_003901428.1| - 0.099 12.3 0.5 0.14 11.7 0.3 1.2 1 0 0 1 1 1 0 N-terminal domain with HPIH motif LysE PF01810.13 gi|307595111|ref|YP_003901428.1| - 1.4 8.1 11.0 15 4.8 7.6 2.1 1 1 0 1 1 1 0 LysE type translocator Polysacc_synt_C PF14667.1 gi|307595111|ref|YP_003901428.1| - 2.3 8.0 14.5 6.2 6.6 0.7 2.5 1 1 1 2 2 2 0 Polysaccharide biosynthesis C-terminal domain Meth_synt_2 PF01717.13 gi|307595112|ref|YP_003901429.1| - 1.3e-42 145.9 0.0 4.2e-25 88.4 0.1 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|307595112|ref|YP_003901429.1| - 8.2e-18 64.7 0.0 3.6e-05 23.1 0.0 3.2 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain tRNA-synt_2 PF00152.15 gi|307595113|ref|YP_003901430.1| - 6.8e-59 199.3 0.0 1.1e-58 198.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|307595113|ref|YP_003901430.1| - 0.018 14.6 0.0 1.6 8.2 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) VASP_tetra PF08776.6 gi|307595113|ref|YP_003901430.1| - 0.14 11.5 0.2 0.52 9.6 0.0 2.0 2 0 0 2 2 2 0 VASP tetramerisation domain GATase_3 PF07685.9 gi|307595114|ref|YP_003901431.1| - 6.5e-28 97.3 0.0 9.8e-28 96.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|307595114|ref|YP_003901431.1| - 5.6e-21 74.8 0.0 9.6e-21 74.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|307595114|ref|YP_003901431.1| - 1.4e-11 44.3 0.0 5.9e-11 42.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|307595114|ref|YP_003901431.1| - 0.013 15.1 0.0 0.057 13.1 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.23 gi|307595114|ref|YP_003901431.1| - 0.015 14.7 0.0 0.067 12.6 0.0 1.9 2 0 0 2 2 2 0 Glutamine amidotransferase class-I GATase_5 PF13507.1 gi|307595114|ref|YP_003901431.1| - 0.093 11.6 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain MarR_2 PF12802.2 gi|307595115|ref|YP_003901432.1| - 1.2e-12 47.3 0.7 2e-12 46.5 0.5 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|307595115|ref|YP_003901432.1| - 3.6e-10 39.0 0.9 6.3e-10 38.2 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|307595115|ref|YP_003901432.1| - 2.5e-08 33.5 0.3 4.6e-08 32.6 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|307595115|ref|YP_003901432.1| - 2.6e-05 23.9 0.5 4.7e-05 23.1 0.4 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|307595115|ref|YP_003901432.1| - 2.7e-05 24.3 0.1 5.1e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|307595115|ref|YP_003901432.1| - 9.3e-05 22.0 0.3 0.00017 21.2 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|307595115|ref|YP_003901432.1| - 0.00014 21.8 1.0 0.00026 20.9 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|307595115|ref|YP_003901432.1| - 0.00019 20.6 1.1 0.00041 19.5 0.8 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.5 gi|307595115|ref|YP_003901432.1| - 0.00051 19.5 0.1 0.00093 18.7 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|307595115|ref|YP_003901432.1| - 0.00062 19.3 0.7 0.0012 18.4 0.5 1.4 1 0 0 1 1 1 1 HTH domain Crp PF00325.15 gi|307595115|ref|YP_003901432.1| - 0.0014 18.0 0.2 0.0027 17.1 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_AsnC-type PF13404.1 gi|307595115|ref|YP_003901432.1| - 0.0025 17.2 1.2 0.0087 15.5 0.8 1.9 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain FaeA PF04703.7 gi|307595115|ref|YP_003901432.1| - 0.0043 17.1 0.1 0.0091 16.1 0.0 1.7 1 0 0 1 1 1 1 FaeA-like protein LexA_DNA_bind PF01726.11 gi|307595115|ref|YP_003901432.1| - 0.014 14.9 0.2 0.023 14.2 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_23 PF13384.1 gi|307595115|ref|YP_003901432.1| - 0.016 14.8 0.4 0.016 14.8 0.3 1.7 2 0 0 2 2 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|307595115|ref|YP_003901432.1| - 0.016 15.3 0.4 0.027 14.6 0.3 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.2 gi|307595115|ref|YP_003901432.1| - 0.018 14.8 0.2 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|307595115|ref|YP_003901432.1| - 0.02 15.0 0.1 0.03 14.4 0.1 1.2 1 0 0 1 1 1 0 Penicillinase repressor GntR PF00392.16 gi|307595115|ref|YP_003901432.1| - 0.048 13.1 1.0 0.09 12.2 0.7 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FeoC PF09012.5 gi|307595115|ref|YP_003901432.1| - 0.05 13.3 0.1 0.082 12.6 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_26 PF13443.1 gi|307595115|ref|YP_003901432.1| - 0.055 13.6 0.1 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Ribosomal_L36e PF01158.13 gi|307595115|ref|YP_003901432.1| - 0.067 13.1 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein L36e RNA_pol_Rpc34 PF05158.7 gi|307595115|ref|YP_003901432.1| - 0.07 12.3 0.0 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_19 PF12844.2 gi|307595115|ref|YP_003901432.1| - 0.094 12.7 0.3 0.17 11.9 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|307595115|ref|YP_003901432.1| - 0.11 12.3 0.3 0.28 11.0 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_36 PF13730.1 gi|307595115|ref|YP_003901432.1| - 0.29 11.3 0.1 0.29 11.3 0.0 2.2 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|307595116|ref|YP_003901433.1| - 3.6e-10 39.4 0.0 5.4e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4393 PF14337.1 gi|307595116|ref|YP_003901433.1| - 0.006 16.0 0.0 0.0065 15.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4393) Rrf2 PF02082.15 gi|307595116|ref|YP_003901433.1| - 0.013 15.5 0.0 0.059 13.4 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator HTH_12 PF08461.5 gi|307595116|ref|YP_003901433.1| - 0.045 13.4 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|307595116|ref|YP_003901433.1| - 0.097 12.3 0.0 0.19 11.4 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4382 PF14321.1 gi|307595117|ref|YP_003901434.1| - 6.7e-27 94.2 0.3 8.2e-27 93.9 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) PAAR_motif PF05488.8 gi|307595117|ref|YP_003901434.1| - 0.062 13.3 0.1 0.23 11.4 0.0 2.1 1 1 0 1 1 1 0 PAAR motif SSrecog PF03531.9 gi|307595117|ref|YP_003901434.1| - 0.078 12.2 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Structure-specific recognition protein (SSRP1) AA_permease_2 PF13520.1 gi|307595118|ref|YP_003901435.1| - 1e-40 139.6 52.5 1.3e-40 139.2 36.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|307595118|ref|YP_003901435.1| - 2.3e-30 105.3 48.5 2.3e-30 105.3 33.6 1.5 1 1 1 2 2 2 1 Amino acid permease Dpy-30 PF05186.8 gi|307595118|ref|YP_003901435.1| - 0.15 11.5 0.2 0.96 8.9 0.0 2.5 3 0 0 3 3 3 0 Dpy-30 motif TrkA_N PF02254.13 gi|307595119|ref|YP_003901436.1| - 2e-14 53.5 0.5 3.5e-14 52.7 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|307595119|ref|YP_003901436.1| - 3.1e-10 39.4 0.2 8e-10 38.1 0.1 1.7 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|307595119|ref|YP_003901436.1| - 0.0037 17.4 0.1 0.024 14.9 0.0 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|307595119|ref|YP_003901436.1| - 0.012 15.9 0.0 0.02 15.1 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain PfkB PF00294.19 gi|307595120|ref|YP_003901437.1| - 2.9e-52 177.7 0.0 3.3e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|307595120|ref|YP_003901437.1| - 0.00012 21.4 0.0 0.00018 20.8 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase GrpE PF01025.14 gi|307595120|ref|YP_003901437.1| - 0.14 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 GrpE Ion_trans_2 PF07885.11 gi|307595122|ref|YP_003901439.1| - 1.8e-16 59.5 5.1 4.1e-16 58.4 3.5 1.6 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.13 gi|307595122|ref|YP_003901439.1| - 1.3e-10 41.2 1.7 3e-10 40.1 0.5 2.0 1 1 1 2 2 2 1 TrkA-N domain Ion_trans PF00520.26 gi|307595122|ref|YP_003901439.1| - 3.9e-08 32.7 4.8 6.9e-08 31.9 3.3 1.3 1 0 0 1 1 1 1 Ion transport protein TrkA_C PF02080.16 gi|307595122|ref|YP_003901439.1| - 1.1e-05 24.8 0.7 3.4e-05 23.3 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain Lig_chan PF00060.21 gi|307595122|ref|YP_003901439.1| - 0.014 15.1 0.1 0.02 14.6 0.1 1.2 1 0 0 1 1 1 0 Ligand-gated ion channel Sigma_reg_N PF13800.1 gi|307595122|ref|YP_003901439.1| - 0.14 12.2 1.4 0.38 10.8 1.0 1.8 1 1 0 1 1 1 0 Sigma factor regulator N-terminal MpPF26 PF07666.6 gi|307595122|ref|YP_003901439.1| - 0.14 12.0 5.0 0.31 10.9 3.1 1.9 1 1 0 1 1 1 0 M penetrans paralogue family 26 HEM4 PF02602.10 gi|307595123|ref|YP_003901440.1| - 1.7e-32 112.4 0.0 2.1e-32 112.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD POC1 PF10450.4 gi|307595123|ref|YP_003901440.1| - 0.0069 15.1 0.1 0.01 14.6 0.0 1.2 1 0 0 1 1 1 1 POC1 chaperone Epimerase PF01370.16 gi|307595124|ref|YP_003901441.1| - 1.9e-48 164.9 0.0 2.3e-48 164.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|307595124|ref|YP_003901441.1| - 2.4e-18 66.0 0.0 3.8e-18 65.4 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|307595124|ref|YP_003901441.1| - 1.3e-16 60.3 0.0 8.5e-16 57.6 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|307595124|ref|YP_003901441.1| - 1.3e-14 53.6 0.0 1.7e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|307595124|ref|YP_003901441.1| - 5.8e-13 48.3 0.8 2.1e-10 39.9 0.5 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|307595124|ref|YP_003901441.1| - 8.2e-10 38.9 0.0 1.1e-09 38.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|307595124|ref|YP_003901441.1| - 3.3e-05 23.8 0.3 0.00043 20.2 0.0 2.5 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|307595124|ref|YP_003901441.1| - 0.0011 18.2 0.1 0.0065 15.7 0.1 2.1 1 1 0 1 1 1 1 NmrA-like family UPF0146 PF03686.8 gi|307595124|ref|YP_003901441.1| - 0.0038 17.0 0.0 0.0075 16.0 0.0 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0146) KR PF08659.5 gi|307595124|ref|YP_003901441.1| - 0.015 14.9 0.0 0.042 13.5 0.0 1.6 1 1 0 2 2 2 0 KR domain Arr-ms PF12120.3 gi|307595124|ref|YP_003901441.1| - 0.13 12.2 0.0 0.49 10.3 0.0 1.9 2 0 0 2 2 2 0 Rifampin ADP-ribosyl transferase COX15-CtaA PF02628.10 gi|307595125|ref|YP_003901442.1| - 0.03 13.2 7.3 0.038 12.8 5.1 1.3 1 1 0 1 1 1 0 Cytochrome oxidase assembly protein DUF2644 PF10841.3 gi|307595125|ref|YP_003901442.1| - 1.3 9.0 5.2 1 9.4 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2644) Orai-1 PF07856.7 gi|307595125|ref|YP_003901442.1| - 2.5 7.6 4.8 4.2 6.8 3.3 1.5 1 1 0 1 1 1 0 Mediator of CRAC channel activity CbiX PF01903.12 gi|307595127|ref|YP_003901444.1| - 0.014 15.5 0.0 0.29 11.2 0.0 2.3 2 0 0 2 2 2 0 CbiX CobD_Cbib PF03186.8 gi|307595128|ref|YP_003901445.1| - 1.1e-83 280.7 0.6 1.3e-83 280.4 0.4 1.1 1 0 0 1 1 1 1 CobD/Cbib protein DUF4577 PF15145.1 gi|307595128|ref|YP_003901445.1| - 0.94 9.3 5.3 7.5 6.4 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4577) Ndc1_Nup PF09531.5 gi|307595128|ref|YP_003901445.1| - 2.5 6.4 5.3 2.8 6.2 0.1 2.6 2 1 1 3 3 3 0 Nucleoporin protein Ndc1-Nup AsnC_trans_reg PF01037.16 gi|307595129|ref|YP_003901446.1| - 8.9e-10 38.1 0.3 1.6e-09 37.3 0.2 1.4 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|307595129|ref|YP_003901446.1| - 2.4e-07 30.4 0.4 1.8e-06 27.6 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|307595129|ref|YP_003901446.1| - 1.4e-06 27.8 0.6 9.6e-06 25.1 0.1 2.5 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|307595129|ref|YP_003901446.1| - 2.3e-06 26.8 0.1 2.7e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|307595129|ref|YP_003901446.1| - 2.9e-06 26.8 0.4 9.8e-06 25.1 0.1 2.0 2 1 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|307595129|ref|YP_003901446.1| - 5.5e-06 26.0 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|307595129|ref|YP_003901446.1| - 0.00066 19.2 0.4 0.0079 15.8 0.3 2.6 1 1 0 1 1 1 1 HTH domain LexA_DNA_bind PF01726.11 gi|307595129|ref|YP_003901446.1| - 0.0017 17.9 0.7 0.0049 16.4 0.5 1.8 1 1 0 1 1 1 1 LexA DNA binding domain HTH_36 PF13730.1 gi|307595129|ref|YP_003901446.1| - 0.002 18.2 0.0 0.0036 17.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|307595129|ref|YP_003901446.1| - 0.0025 17.3 1.4 0.11 12.0 0.0 2.7 3 0 0 3 3 3 1 HTH DNA binding domain HTH_34 PF13601.1 gi|307595129|ref|YP_003901446.1| - 0.0036 17.3 0.1 0.0085 16.1 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_8 PF02954.14 gi|307595129|ref|YP_003901446.1| - 0.004 16.6 0.5 0.05 13.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family DUF4423 PF14394.1 gi|307595129|ref|YP_003901446.1| - 0.0042 16.6 0.1 0.016 14.7 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) MarR PF01047.17 gi|307595129|ref|YP_003901446.1| - 0.0056 16.3 0.1 0.014 15.0 0.1 1.8 1 1 0 1 1 1 1 MarR family RP-C PF03428.8 gi|307595129|ref|YP_003901446.1| - 0.013 14.9 0.1 0.031 13.7 0.0 1.6 1 1 0 1 1 1 0 Replication protein C N-terminal domain HTH_27 PF13463.1 gi|307595129|ref|YP_003901446.1| - 0.014 15.7 0.4 0.048 13.9 0.1 2.1 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_Tnp_1_2 PF13022.1 gi|307595129|ref|YP_003901446.1| - 0.028 14.1 0.1 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase TrmB PF01978.14 gi|307595129|ref|YP_003901446.1| - 0.072 12.8 3.9 0.22 11.2 0.2 3.2 3 1 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF357 PF04010.8 gi|307595130|ref|YP_003901447.1| - 7.4e-21 73.6 0.9 1.2e-20 73.0 0.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|307595130|ref|YP_003901447.1| - 7.8e-10 39.0 0.1 4.5e-08 33.2 0.0 2.7 2 1 0 2 2 2 1 Cytidylyltransferase DUF2207 PF09972.4 gi|307595131|ref|YP_003901448.1| - 2.1 6.8 4.0 2.4 6.6 2.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Mito_fiss_reg PF05308.6 gi|307595131|ref|YP_003901448.1| - 2.1 7.6 3.7 2.9 7.2 2.6 1.1 1 0 0 1 1 1 0 Mitochondrial fission regulator tRNA-synt_2b PF00587.20 gi|307595133|ref|YP_003901450.1| - 8e-25 87.4 1.6 1.1e-24 86.9 0.6 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|307595133|ref|YP_003901450.1| - 1.3e-22 79.5 0.1 3.2e-22 78.2 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|307595133|ref|YP_003901450.1| - 1.1e-11 44.4 0.0 6.8e-11 41.9 0.0 2.2 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal Fer4_7 PF12838.2 gi|307595134|ref|YP_003901451.1| - 6.2e-12 45.7 32.3 1.6e-07 31.6 7.8 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307595134|ref|YP_003901451.1| - 2.8e-11 42.5 8.9 4.6e-06 25.9 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|307595134|ref|YP_003901451.1| - 8.6e-10 38.7 32.4 5.8e-06 26.4 8.4 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307595134|ref|YP_003901451.1| - 2.7e-09 36.4 8.1 0.0003 20.5 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307595134|ref|YP_003901451.1| - 3.4e-08 33.1 19.0 1.8e-06 27.6 6.9 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307595134|ref|YP_003901451.1| - 1.3e-07 31.1 10.1 0.00047 19.9 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|307595134|ref|YP_003901451.1| - 2.5e-07 30.6 9.6 5e-07 29.6 6.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307595134|ref|YP_003901451.1| - 7.9e-07 28.8 10.7 0.0027 17.5 2.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307595134|ref|YP_003901451.1| - 1e-05 26.1 8.9 0.008 16.8 0.4 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|307595134|ref|YP_003901451.1| - 2.6e-05 24.5 13.4 0.0005 20.4 2.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307595134|ref|YP_003901451.1| - 0.00013 21.9 12.6 0.01 16.1 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|307595134|ref|YP_003901451.1| - 0.00014 22.0 11.3 0.0082 16.4 0.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307595134|ref|YP_003901451.1| - 0.00039 20.9 10.5 0.095 13.2 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|307595134|ref|YP_003901451.1| - 0.0014 18.4 2.3 0.0017 18.1 1.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|307595134|ref|YP_003901451.1| - 0.0048 17.3 17.0 0.051 14.1 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|307595134|ref|YP_003901451.1| - 0.038 14.3 11.6 0.042 14.2 1.5 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF4001 PF13165.1 gi|307595134|ref|YP_003901451.1| - 9.3 6.0 8.6 4.4 7.0 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) RIO1 PF01163.17 gi|307595136|ref|YP_003901453.1| - 0.00027 20.3 0.0 0.00042 19.7 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|307595136|ref|YP_003901453.1| - 0.017 14.8 0.0 3 7.4 0.0 2.1 1 1 1 2 2 2 0 Phosphotransferase enzyme family PUA PF01472.15 gi|307595137|ref|YP_003901454.1| - 4.1e-22 77.6 0.4 6.1e-22 77.1 0.3 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.5 gi|307595137|ref|YP_003901454.1| - 0.0016 18.1 0.0 0.0033 17.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) tRNA_bind PF01588.15 gi|307595138|ref|YP_003901455.1| - 5.3e-27 93.4 0.0 6e-27 93.3 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain Peptidase_M16 PF00675.15 gi|307595139|ref|YP_003901456.1| - 1.3e-19 70.4 0.0 2.2e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.16 gi|307595139|ref|YP_003901456.1| - 4.3e-13 49.3 0.0 2e-12 47.1 0.0 1.9 2 0 0 2 2 2 1 Peptidase M16 inactive domain FAM180 PF15173.1 gi|307595139|ref|YP_003901456.1| - 0.098 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 FAM180 family SIR2 PF02146.12 gi|307595140|ref|YP_003901457.1| - 1.2e-49 168.4 0.0 1.4e-49 168.1 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.17 gi|307595140|ref|YP_003901457.1| - 0.002 17.9 0.0 0.11 12.2 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain ADK_lid PF05191.9 gi|307595140|ref|YP_003901457.1| - 0.0068 16.0 0.3 0.019 14.6 0.2 1.8 1 1 0 1 1 1 1 Adenylate kinase, active site lid Glyco_trans_4_4 PF13579.1 gi|307595141|ref|YP_003901458.1| - 1.7e-09 37.9 0.0 2.1e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|307595141|ref|YP_003901458.1| - 4.4e-07 29.6 0.3 0.0047 16.4 0.2 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|307595141|ref|YP_003901458.1| - 0.0016 18.3 0.2 0.002 17.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Rrf2 PF02082.15 gi|307595142|ref|YP_003901459.1| - 0.00015 21.8 0.2 0.0002 21.3 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|307595142|ref|YP_003901459.1| - 0.00021 20.6 0.5 0.00053 19.3 0.3 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RPA_C PF08784.6 gi|307595142|ref|YP_003901459.1| - 0.0011 19.3 0.1 0.0013 19.0 0.0 1.1 1 0 0 1 1 1 1 Replication protein A C terminal DUF4423 PF14394.1 gi|307595142|ref|YP_003901459.1| - 0.0092 15.5 0.2 0.01 15.4 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Integrase_1 PF12835.2 gi|307595142|ref|YP_003901459.1| - 0.0099 15.6 0.1 0.011 15.4 0.1 1.1 1 0 0 1 1 1 1 Integrase DUF2067 PF09840.4 gi|307595142|ref|YP_003901459.1| - 0.014 14.9 0.4 0.016 14.7 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) TRM PF02005.11 gi|307595142|ref|YP_003901459.1| - 0.017 14.0 0.3 0.018 13.9 0.2 1.0 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase TFIIE_alpha PF02002.12 gi|307595142|ref|YP_003901459.1| - 0.017 14.5 0.6 0.027 13.9 0.4 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit DDRGK PF09756.4 gi|307595142|ref|YP_003901459.1| - 0.036 13.4 0.5 0.042 13.2 0.4 1.1 1 0 0 1 1 1 0 DDRGK domain Rad60-SLD PF11976.3 gi|307595142|ref|YP_003901459.1| - 0.04 13.6 0.3 0.065 12.9 0.2 1.4 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like TrmB PF01978.14 gi|307595142|ref|YP_003901459.1| - 0.053 13.2 0.6 0.15 11.8 0.2 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_15 PF12324.3 gi|307595142|ref|YP_003901459.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase SporV_AA PF12164.3 gi|307595142|ref|YP_003901459.1| - 0.26 11.3 1.9 7.5 6.6 0.1 2.4 1 1 1 2 2 2 0 Stage V sporulation protein AA Glyco_hydro_57 PF03065.10 gi|307595143|ref|YP_003901460.1| - 7e-35 120.5 4.0 9.1e-34 116.9 2.8 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 A2M_N PF01835.14 gi|307595143|ref|YP_003901460.1| - 0.071 13.3 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 MG2 domain Arrestin_C PF02752.17 gi|307595143|ref|YP_003901460.1| - 0.081 13.0 0.1 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain Amidohydro_1 PF01979.15 gi|307595144|ref|YP_003901461.1| - 8.1e-07 29.0 0.0 2.2e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|307595144|ref|YP_003901461.1| - 0.0021 17.8 0.0 0.0041 16.9 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase VWA_2 PF13519.1 gi|307595146|ref|YP_003901463.1| - 5.5e-06 26.6 0.1 1.2e-05 25.5 0.1 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|307595146|ref|YP_003901463.1| - 2.1e-05 23.7 0.1 0.00038 19.6 0.0 2.3 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein PTPS PF01242.14 gi|307595147|ref|YP_003901464.1| - 2.6e-11 43.2 0.0 2.9e-11 43.1 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase TP_methylase PF00590.15 gi|307595148|ref|YP_003901465.1| - 1.6e-41 142.3 0.3 1.9e-41 142.1 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peptidase_M54 PF07998.6 gi|307595149|ref|YP_003901466.1| - 1.5e-27 96.6 0.0 1.7e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|307595149|ref|YP_003901466.1| - 0.00011 21.8 0.0 0.00017 21.3 0.0 1.4 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|307595149|ref|YP_003901466.1| - 0.0005 20.5 0.0 0.00067 20.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|307595149|ref|YP_003901466.1| - 0.0007 19.1 0.0 0.00085 18.9 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|307595149|ref|YP_003901466.1| - 0.0023 18.0 0.0 0.0026 17.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|307595149|ref|YP_003901466.1| - 0.0066 14.9 0.3 0.0097 14.4 0.2 1.1 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_5 PF13688.1 gi|307595149|ref|YP_003901466.1| - 0.011 15.7 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M66 PF10462.4 gi|307595149|ref|YP_003901466.1| - 0.015 14.1 0.0 0.021 13.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M43 PF05572.8 gi|307595149|ref|YP_003901466.1| - 0.057 13.0 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Methyltransf_26 PF13659.1 gi|307595150|ref|YP_003901467.1| - 1.8e-14 53.7 0.0 3.3e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307595150|ref|YP_003901467.1| - 4.5e-06 26.3 0.0 6.7e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307595150|ref|YP_003901467.1| - 3.4e-05 24.3 0.0 6.9e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|307595150|ref|YP_003901467.1| - 4.1e-05 23.1 0.0 7.2e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 DNA methylase MTS PF05175.9 gi|307595150|ref|YP_003901467.1| - 0.00017 21.0 0.0 0.00034 20.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|307595150|ref|YP_003901467.1| - 0.00063 19.3 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|307595150|ref|YP_003901467.1| - 0.0023 17.4 0.0 0.0037 16.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.11 gi|307595150|ref|YP_003901467.1| - 0.003 16.6 0.0 0.0062 15.6 0.0 1.5 1 0 0 1 1 1 1 N-6 DNA Methylase UPF0020 PF01170.13 gi|307595150|ref|YP_003901467.1| - 0.15 11.6 0.0 0.46 10.0 0.0 1.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF3853 PF12964.2 gi|307595151|ref|YP_003901468.1| - 0.0079 15.9 0.0 0.0082 15.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3853) AAA_10 PF12846.2 gi|307595152|ref|YP_003901469.1| - 2e-27 96.4 0.7 3e-27 95.8 0.5 1.3 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|307595152|ref|YP_003901469.1| - 1.5e-15 57.6 0.1 4.1e-15 56.2 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|307595152|ref|YP_003901469.1| - 9.3e-09 35.0 0.1 1.7e-06 27.6 0.0 2.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.7 gi|307595152|ref|YP_003901469.1| - 1.1e-08 34.8 0.1 5.6e-07 29.2 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|307595152|ref|YP_003901469.1| - 4e-08 32.3 0.0 7.2e-08 31.4 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|307595152|ref|YP_003901469.1| - 5.3e-06 26.6 2.6 0.014 15.5 1.8 3.0 1 1 0 1 1 1 1 AAA domain DUF853 PF05872.7 gi|307595152|ref|YP_003901469.1| - 3.6e-05 22.3 0.1 0.034 12.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) MobB PF03205.9 gi|307595152|ref|YP_003901469.1| - 0.00012 21.8 0.0 0.00025 20.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DEAD PF00270.24 gi|307595152|ref|YP_003901469.1| - 0.00015 21.3 0.1 0.26 10.7 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase T2SE PF00437.15 gi|307595152|ref|YP_003901469.1| - 0.00025 20.0 0.0 0.00052 18.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein NACHT PF05729.7 gi|307595152|ref|YP_003901469.1| - 0.00083 19.0 0.0 0.0016 18.1 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|307595152|ref|YP_003901469.1| - 0.001 19.0 4.8 0.0069 16.3 3.3 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|307595152|ref|YP_003901469.1| - 0.0012 19.0 0.5 0.37 10.9 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|307595152|ref|YP_003901469.1| - 0.0018 18.1 0.1 0.15 11.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|307595152|ref|YP_003901469.1| - 0.002 17.8 0.0 0.0081 15.8 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain Septin PF00735.13 gi|307595152|ref|YP_003901469.1| - 0.0025 16.8 0.0 0.0036 16.3 0.0 1.3 1 0 0 1 1 1 1 Septin ResIII PF04851.10 gi|307595152|ref|YP_003901469.1| - 0.0033 17.2 0.0 0.41 10.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PduV-EutP PF10662.4 gi|307595152|ref|YP_003901469.1| - 0.0039 16.6 0.0 0.0099 15.3 0.0 1.7 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.11 gi|307595152|ref|YP_003901469.1| - 0.0052 16.0 0.1 0.049 12.8 0.0 2.5 3 0 0 3 3 3 1 PhoH-like protein ATP_bind_1 PF03029.12 gi|307595152|ref|YP_003901469.1| - 0.0063 16.0 0.1 0.016 14.8 0.0 1.6 2 0 0 2 2 1 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|307595152|ref|YP_003901469.1| - 0.0071 15.9 0.1 0.51 9.8 0.0 2.8 4 0 0 4 4 2 1 AAA domain cobW PF02492.14 gi|307595152|ref|YP_003901469.1| - 0.0092 15.4 0.1 0.021 14.2 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Pox_A32 PF04665.7 gi|307595152|ref|YP_003901469.1| - 0.012 14.9 1.9 0.11 11.7 0.0 2.6 3 0 0 3 3 3 0 Poxvirus A32 protein AAA_29 PF13555.1 gi|307595152|ref|YP_003901469.1| - 0.012 15.0 0.0 0.034 13.6 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|307595152|ref|YP_003901469.1| - 0.014 15.7 0.6 0.035 14.3 0.4 1.8 1 1 0 1 1 1 0 ABC transporter DUF2075 PF09848.4 gi|307595152|ref|YP_003901469.1| - 0.014 14.3 0.5 1.1 8.1 0.0 2.6 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|307595152|ref|YP_003901469.1| - 0.016 14.7 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Miro PF08477.8 gi|307595152|ref|YP_003901469.1| - 0.016 15.6 0.0 0.039 14.4 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein AAA_25 PF13481.1 gi|307595152|ref|YP_003901469.1| - 0.017 14.5 1.1 0.37 10.1 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|307595152|ref|YP_003901469.1| - 0.019 14.8 0.0 0.24 11.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|307595152|ref|YP_003901469.1| - 0.024 14.3 0.1 0.74 9.5 0.1 2.6 2 0 0 2 2 2 0 NTPase Arch_ATPase PF01637.13 gi|307595152|ref|YP_003901469.1| - 0.025 14.3 0.1 0.078 12.6 0.0 1.9 1 1 1 2 2 2 0 Archaeal ATPase HTH_17 PF12728.2 gi|307595152|ref|YP_003901469.1| - 0.028 14.6 0.2 9.1 6.6 0.0 3.1 3 0 0 3 3 2 0 Helix-turn-helix domain RNA_helicase PF00910.17 gi|307595152|ref|YP_003901469.1| - 0.036 14.2 0.0 0.19 11.9 0.0 2.1 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.17 gi|307595152|ref|YP_003901469.1| - 0.058 12.2 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF815 PF05673.8 gi|307595152|ref|YP_003901469.1| - 0.12 11.2 0.1 0.28 10.0 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|307595152|ref|YP_003901469.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|307595152|ref|YP_003901469.1| - 0.15 12.3 0.6 0.68 10.2 0.0 2.3 3 0 0 3 3 1 0 AAA domain T4SS-DNA_transf PF02534.9 gi|307595152|ref|YP_003901469.1| - 0.16 10.5 0.0 0.24 9.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer MMR_HSR1 PF01926.18 gi|307595152|ref|YP_003901469.1| - 0.38 10.7 1.8 0.88 9.5 0.4 2.3 2 2 0 2 2 2 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|307595153|ref|YP_003901470.1| - 4.2e-21 75.6 0.0 4.9e-11 42.6 0.0 2.3 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|307595153|ref|YP_003901470.1| - 5.2e-07 29.7 0.0 2.6e-06 27.4 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|307595153|ref|YP_003901470.1| - 3.9e-06 27.0 0.0 0.0045 17.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|307595153|ref|YP_003901470.1| - 1.7e-05 24.3 0.0 5.4e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|307595153|ref|YP_003901470.1| - 2.4e-05 23.1 0.0 0.00021 20.0 0.0 2.3 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.10 gi|307595153|ref|YP_003901470.1| - 6e-05 22.9 0.0 0.0031 17.3 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_16 PF13191.1 gi|307595153|ref|YP_003901470.1| - 0.00014 21.9 0.0 0.00031 20.7 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|307595153|ref|YP_003901470.1| - 0.00019 21.8 0.1 0.00058 20.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|307595153|ref|YP_003901470.1| - 0.00057 19.3 0.0 0.0014 18.0 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein PhoH PF02562.11 gi|307595153|ref|YP_003901470.1| - 0.001 18.3 0.0 0.0036 16.5 0.0 1.8 2 0 0 2 2 2 1 PhoH-like protein AAA PF00004.24 gi|307595153|ref|YP_003901470.1| - 0.0011 19.2 0.0 0.01 16.0 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|307595153|ref|YP_003901470.1| - 0.0016 18.1 0.0 0.0035 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|307595153|ref|YP_003901470.1| - 0.0022 18.3 0.0 0.004 17.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter RuvB_N PF05496.7 gi|307595153|ref|YP_003901470.1| - 0.0028 16.7 0.0 0.0053 15.8 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus NACHT PF05729.7 gi|307595153|ref|YP_003901470.1| - 0.0034 17.0 0.1 0.015 14.9 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_17 PF13207.1 gi|307595153|ref|YP_003901470.1| - 0.0055 17.5 0.6 0.029 15.1 0.2 2.2 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|307595153|ref|YP_003901470.1| - 0.006 16.2 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|307595153|ref|YP_003901470.1| - 0.0088 14.9 0.0 0.018 13.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Zot PF05707.7 gi|307595153|ref|YP_003901470.1| - 0.0097 15.3 0.0 0.24 10.8 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|307595153|ref|YP_003901470.1| - 0.01 15.5 0.1 0.029 14.0 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|307595153|ref|YP_003901470.1| - 0.01 15.2 0.4 0.032 13.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|307595153|ref|YP_003901470.1| - 0.012 15.0 0.0 0.29 10.5 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase Sigma54_activat PF00158.21 gi|307595153|ref|YP_003901470.1| - 0.014 14.9 0.0 0.085 12.3 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_29 PF13555.1 gi|307595153|ref|YP_003901470.1| - 0.014 14.8 0.0 0.032 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|307595153|ref|YP_003901470.1| - 0.016 15.1 0.0 0.53 10.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain T4SS-DNA_transf PF02534.9 gi|307595153|ref|YP_003901470.1| - 0.022 13.3 0.0 0.045 12.3 0.0 1.5 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer SRP54 PF00448.17 gi|307595153|ref|YP_003901470.1| - 0.022 14.1 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF853 PF05872.7 gi|307595153|ref|YP_003901470.1| - 0.029 12.7 0.0 1 7.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) DUF2075 PF09848.4 gi|307595153|ref|YP_003901470.1| - 0.029 13.3 0.0 0.27 10.1 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ArgK PF03308.11 gi|307595153|ref|YP_003901470.1| - 0.034 12.9 0.0 0.063 12.0 0.0 1.4 1 0 0 1 1 1 0 ArgK protein LRR_4 PF12799.2 gi|307595153|ref|YP_003901470.1| - 0.036 13.7 0.1 0.19 11.3 0.1 2.3 1 0 0 1 1 1 0 Leucine Rich repeats (2 copies) AAA_18 PF13238.1 gi|307595153|ref|YP_003901470.1| - 0.056 13.7 0.2 0.19 12.0 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_11 PF13086.1 gi|307595153|ref|YP_003901470.1| - 0.086 12.3 0.0 0.2 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|307595153|ref|YP_003901470.1| - 0.11 11.6 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI cobW PF02492.14 gi|307595153|ref|YP_003901470.1| - 0.13 11.6 0.2 0.44 9.9 0.1 1.9 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|307595153|ref|YP_003901470.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|307595153|ref|YP_003901470.1| - 0.19 11.2 0.1 0.35 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AdoMet_dc PF02675.10 gi|307595154|ref|YP_003901471.1| - 5.2e-34 116.3 0.1 6.2e-34 116.0 0.1 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SIS PF01380.17 gi|307595155|ref|YP_003901472.1| - 8.8e-18 64.1 0.0 1.4e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|307595155|ref|YP_003901472.1| - 2.9e-12 46.4 2.2 2.5e-07 30.4 0.4 2.4 1 1 1 2 2 2 2 SIS domain Cas_Cas02710 PF09670.5 gi|307595155|ref|YP_003901472.1| - 0.045 12.3 0.1 0.058 12.0 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) CPSase_L_chain PF00289.17 gi|307595155|ref|YP_003901472.1| - 0.099 12.7 0.3 2.3 8.3 0.1 2.1 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain PRMT5 PF05185.11 gi|307595155|ref|YP_003901472.1| - 0.96 8.2 2.5 1.4 7.7 0.1 2.0 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase PhoH PF02562.11 gi|307595156|ref|YP_003901473.1| - 4.8e-49 166.3 0.0 6.2e-49 166.0 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_5 PF13184.1 gi|307595156|ref|YP_003901473.1| - 3.2e-07 30.0 0.3 0.0001 22.0 0.0 2.6 2 0 0 2 2 2 2 NusA-like KH domain KH_2 PF07650.12 gi|307595156|ref|YP_003901473.1| - 8.4e-07 28.4 4.9 4.7e-06 26.0 1.9 2.4 1 1 1 2 2 2 1 KH domain KH_1 PF00013.24 gi|307595156|ref|YP_003901473.1| - 3.7e-05 23.2 1.5 0.00011 21.7 0.2 2.3 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|307595156|ref|YP_003901473.1| - 0.0013 18.3 0.4 0.004 16.7 0.3 1.9 1 0 0 1 1 1 1 KH domain AAA_30 PF13604.1 gi|307595156|ref|YP_003901473.1| - 0.0049 16.4 0.0 0.097 12.2 0.0 2.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|307595156|ref|YP_003901473.1| - 0.007 15.7 0.0 0.014 14.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.22 gi|307595156|ref|YP_003901473.1| - 0.022 15.0 0.3 0.1 12.9 0.2 2.2 1 1 0 1 1 1 0 ABC transporter AAA_22 PF13401.1 gi|307595156|ref|YP_003901473.1| - 0.066 13.3 0.4 0.28 11.3 0.3 2.0 1 1 0 1 1 1 0 AAA domain KH_4 PF13083.1 gi|307595156|ref|YP_003901473.1| - 0.17 11.5 2.3 0.37 10.4 0.7 2.3 2 1 0 2 2 2 0 KH domain Lysine_decarbox PF03641.9 gi|307595157|ref|YP_003901474.1| - 2.5e-05 24.0 0.1 4.5e-05 23.2 0.0 1.7 1 1 1 2 2 2 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|307595157|ref|YP_003901474.1| - 0.01 15.6 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase NOG1 PF06858.9 gi|307595158|ref|YP_003901475.1| - 9.6e-19 67.0 0.0 1.9e-18 66.0 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|307595158|ref|YP_003901475.1| - 4.3e-16 58.9 0.0 8.1e-16 58.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|307595158|ref|YP_003901475.1| - 2.5e-12 46.3 0.1 3.5e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|307595158|ref|YP_003901475.1| - 3.5e-06 27.4 0.0 5.7e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|307595158|ref|YP_003901475.1| - 0.00032 20.1 0.0 0.00092 18.6 0.0 1.7 1 1 0 1 1 1 1 Ras family Gtr1_RagA PF04670.7 gi|307595158|ref|YP_003901475.1| - 0.0013 17.9 0.0 0.0019 17.3 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region PduV-EutP PF10662.4 gi|307595158|ref|YP_003901475.1| - 0.0041 16.6 0.0 0.0077 15.7 0.0 1.5 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AIG1 PF04548.11 gi|307595158|ref|YP_003901475.1| - 0.011 14.8 0.1 0.03 13.4 0.0 1.8 1 1 1 2 2 2 0 AIG1 family Arf PF00025.16 gi|307595158|ref|YP_003901475.1| - 0.043 13.0 0.0 0.11 11.7 0.0 1.8 1 1 0 1 1 1 0 ADP-ribosylation factor family Dynamin_N PF00350.18 gi|307595158|ref|YP_003901475.1| - 0.05 13.4 0.5 1.9 8.2 0.0 2.3 1 1 1 2 2 2 0 Dynamin family SRPRB PF09439.5 gi|307595158|ref|YP_003901475.1| - 0.079 12.1 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF258 PF03193.11 gi|307595158|ref|YP_003901475.1| - 0.13 11.4 0.0 0.27 10.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF998 PF06197.8 gi|307595159|ref|YP_003901476.1| - 8.2e-27 93.7 21.9 1e-26 93.3 15.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Frag1 PF10277.4 gi|307595159|ref|YP_003901476.1| - 0.014 14.8 11.1 0.51 9.7 7.7 2.5 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family DUF2976 PF11190.3 gi|307595159|ref|YP_003901476.1| - 0.5 9.9 9.4 0.35 10.4 0.1 2.7 1 1 1 3 3 3 0 Protein of unknown function (DUF2976) Choline_transpo PF04515.7 gi|307595159|ref|YP_003901476.1| - 3.2 6.4 10.3 3.2 6.3 5.3 2.0 1 1 1 2 2 2 0 Plasma-membrane choline transporter Antitoxin-MazE PF04014.13 gi|307595162|ref|YP_003901479.1| - 2.8e-09 36.4 0.4 3.4e-07 29.8 0.1 2.3 2 0 0 2 2 2 2 Antidote-toxin recognition MazE DUF2079 PF09852.4 gi|307595163|ref|YP_003901480.1| - 1.3e-60 205.3 38.8 1.7e-60 205.0 26.9 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2079) Metallophos_2 PF12850.2 gi|307595164|ref|YP_003901481.1| - 2.1e-08 34.1 0.0 3.3e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|307595164|ref|YP_003901481.1| - 2.9e-08 33.3 0.0 4e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Acetyltransf_1 PF00583.19 gi|307595165|ref|YP_003901482.1| - 1.6e-16 60.0 0.0 2.5e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|307595165|ref|YP_003901482.1| - 4.3e-09 36.0 0.0 6.2e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|307595165|ref|YP_003901482.1| - 1.3e-08 34.9 0.0 3.5e-08 33.5 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|307595165|ref|YP_003901482.1| - 9e-08 32.2 0.0 1.1e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|307595165|ref|YP_003901482.1| - 2.3e-06 27.4 0.0 1.2e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|307595165|ref|YP_003901482.1| - 4.3e-06 26.6 0.0 1.5e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|307595165|ref|YP_003901482.1| - 2.5e-05 24.3 0.0 3.9e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|307595165|ref|YP_003901482.1| - 0.00022 21.1 0.0 0.00033 20.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|307595165|ref|YP_003901482.1| - 0.014 15.5 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.2 gi|307595165|ref|YP_003901482.1| - 0.04 12.7 0.0 0.052 12.3 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Pyr_redox_2 PF07992.9 gi|307595166|ref|YP_003901483.1| - 5.5e-10 39.4 0.1 1.5e-09 38.0 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|307595166|ref|YP_003901483.1| - 2.2e-06 27.9 4.6 0.0085 16.4 0.6 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|307595166|ref|YP_003901483.1| - 4.6e-05 23.2 0.2 0.0016 18.2 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|307595166|ref|YP_003901483.1| - 0.00043 20.2 0.1 0.00091 19.2 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|307595166|ref|YP_003901483.1| - 0.00086 18.0 0.6 0.0014 17.3 0.4 1.3 1 0 0 1 1 1 1 Tryptophan halogenase DAO PF01266.19 gi|307595166|ref|YP_003901483.1| - 0.0014 17.6 4.4 0.0021 17.0 1.1 2.3 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|307595166|ref|YP_003901483.1| - 0.0067 15.5 0.8 0.037 13.0 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain K_oxygenase PF13434.1 gi|307595166|ref|YP_003901483.1| - 0.016 14.1 0.0 0.036 12.9 0.0 1.5 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|307595166|ref|YP_003901483.1| - 0.017 14.0 0.1 0.028 13.3 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|307595166|ref|YP_003901483.1| - 0.031 13.1 0.7 0.056 12.2 0.5 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_7 PF13241.1 gi|307595166|ref|YP_003901483.1| - 0.032 14.4 0.1 0.072 13.3 0.0 1.6 2 0 0 2 2 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|307595166|ref|YP_003901483.1| - 0.034 14.1 1.0 0.95 9.4 0.1 3.1 3 1 1 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|307595166|ref|YP_003901483.1| - 0.68 9.9 2.8 0.57 10.1 0.6 1.9 2 0 0 2 2 2 0 TrkA-N domain Lactamase_B PF00753.22 gi|307595167|ref|YP_003901484.1| - 7.3e-28 97.5 0.4 1e-27 97.0 0.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|307595167|ref|YP_003901484.1| - 7e-07 28.9 0.0 1.2e-06 28.2 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RGP PF03214.8 gi|307595167|ref|YP_003901484.1| - 0.025 13.3 0.0 0.036 12.8 0.0 1.2 1 0 0 1 1 1 0 Reversibly glycosylated polypeptide Cys_Met_Meta_PP PF01053.15 gi|307595169|ref|YP_003901486.1| - 6.3e-124 413.1 0.0 7.1e-124 412.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|307595169|ref|YP_003901486.1| - 1.1e-05 24.3 0.3 1.6e-05 23.8 0.2 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|307595169|ref|YP_003901486.1| - 0.00085 18.5 0.0 0.031 13.4 0.0 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|307595169|ref|YP_003901486.1| - 0.0056 15.4 0.1 0.0088 14.7 0.1 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein DegT_DnrJ_EryC1 PF01041.12 gi|307595169|ref|YP_003901486.1| - 0.033 13.2 0.0 0.12 11.4 0.0 1.8 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Met_gamma_lyase PF06838.6 gi|307595169|ref|YP_003901486.1| - 0.035 12.4 0.1 0.054 11.7 0.1 1.4 1 0 0 1 1 1 0 Methionine gamma-lyase P5CR_dimer PF14748.1 gi|307595170|ref|YP_003901487.1| - 7.9e-29 99.8 0.0 1.3e-28 99.1 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|307595170|ref|YP_003901487.1| - 3.6e-20 72.1 0.3 7.1e-20 71.2 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|307595170|ref|YP_003901487.1| - 5.5e-12 45.6 0.4 1.2e-11 44.6 0.2 1.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|307595170|ref|YP_003901487.1| - 1.5e-08 34.2 0.4 2.4e-08 33.5 0.3 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|307595170|ref|YP_003901487.1| - 9e-07 28.8 0.1 7.2e-06 25.9 0.1 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|307595170|ref|YP_003901487.1| - 0.0012 18.2 0.1 0.0018 17.6 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|307595170|ref|YP_003901487.1| - 0.0036 17.3 0.2 0.0051 16.8 0.2 1.2 1 0 0 1 1 1 1 NADH(P)-binding ThiF PF00899.16 gi|307595170|ref|YP_003901487.1| - 0.0038 17.0 1.4 0.028 14.2 0.1 2.1 1 1 1 2 2 2 1 ThiF family TrkA_N PF02254.13 gi|307595170|ref|YP_003901487.1| - 0.0041 17.1 0.1 0.0078 16.2 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|307595170|ref|YP_003901487.1| - 0.0043 16.2 0.1 0.0072 15.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDH PF02153.12 gi|307595170|ref|YP_003901487.1| - 0.0068 15.3 0.3 0.0092 14.8 0.2 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase Shikimate_DH PF01488.15 gi|307595170|ref|YP_003901487.1| - 0.0086 16.1 0.1 0.016 15.3 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|307595170|ref|YP_003901487.1| - 0.032 14.7 0.0 0.052 14.0 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|307595170|ref|YP_003901487.1| - 0.16 11.8 1.2 0.23 11.3 0.1 1.8 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus AdoHcyase_NAD PF00670.16 gi|307595170|ref|YP_003901487.1| - 0.17 11.7 1.4 1.5 8.6 0.1 2.2 1 1 1 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Metallophos_2 PF12850.2 gi|307595171|ref|YP_003901488.1| - 4.5e-07 29.8 0.0 7.7e-07 29.0 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Cupin_3 PF05899.7 gi|307595171|ref|YP_003901488.1| - 0.46 9.9 2.2 0.52 9.7 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF861) DUF1626 PF07788.6 gi|307595172|ref|YP_003901489.1| - 8.3e-25 86.3 5.4 1.8e-24 85.2 3.7 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|307595172|ref|YP_003901489.1| - 4.8e-18 64.6 17.5 2.6e-13 49.5 12.1 3.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) Apolipoprotein PF01442.13 gi|307595172|ref|YP_003901489.1| - 4.6e-05 23.0 5.0 6.4e-05 22.5 3.5 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Syntaxin_2 PF14523.1 gi|307595172|ref|YP_003901489.1| - 0.0081 16.1 5.6 8.6 6.4 3.9 3.0 1 1 0 1 1 1 0 Syntaxin-like protein Lipoprotein_7 PF01540.11 gi|307595172|ref|YP_003901489.1| - 0.012 14.7 5.0 0.016 14.2 3.4 1.3 1 0 0 1 1 1 0 Adhesin lipoprotein HTH_Mga PF08280.6 gi|307595172|ref|YP_003901489.1| - 0.019 14.7 0.0 0.059 13.1 0.0 1.8 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain AAA_13 PF13166.1 gi|307595172|ref|YP_003901489.1| - 0.019 13.4 5.9 0.025 13.0 4.1 1.1 1 0 0 1 1 1 0 AAA domain Syntaxin PF00804.20 gi|307595172|ref|YP_003901489.1| - 0.019 15.1 11.3 0.12 12.5 1.6 2.3 1 1 1 2 2 2 0 Syntaxin OmpH PF03938.9 gi|307595172|ref|YP_003901489.1| - 0.053 13.4 5.1 0.08 12.8 3.5 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF883 PF05957.8 gi|307595172|ref|YP_003901489.1| - 0.053 13.9 8.3 0.26 11.7 0.6 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF2077 PF09850.4 gi|307595172|ref|YP_003901489.1| - 0.066 12.6 1.2 3.6 6.9 0.0 2.3 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2077) APG6 PF04111.7 gi|307595172|ref|YP_003901489.1| - 0.09 11.8 8.3 0.12 11.4 5.7 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF1826 PF08856.6 gi|307595172|ref|YP_003901489.1| - 0.091 12.5 1.1 0.13 12.0 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1826) DUF2730 PF10805.3 gi|307595172|ref|YP_003901489.1| - 0.098 12.3 7.8 0.15 11.7 4.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) DUF932 PF06067.6 gi|307595172|ref|YP_003901489.1| - 0.11 11.8 3.6 0.14 11.4 2.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF932) ACR_tran PF00873.14 gi|307595172|ref|YP_003901489.1| - 0.11 9.8 2.7 0.14 9.5 1.9 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Cupin_8 PF13621.1 gi|307595172|ref|YP_003901489.1| - 0.18 11.2 1.4 0.23 10.8 1.0 1.1 1 0 0 1 1 1 0 Cupin-like domain 5_nucleotid PF05761.9 gi|307595172|ref|YP_003901489.1| - 0.19 10.2 4.7 0.26 9.7 3.3 1.2 1 0 0 1 1 1 0 5' nucleotidase family Trehalase PF01204.13 gi|307595172|ref|YP_003901489.1| - 0.19 10.3 4.0 0.26 9.8 2.8 1.1 1 0 0 1 1 1 0 Trehalase FlaC_arch PF05377.6 gi|307595172|ref|YP_003901489.1| - 0.33 10.8 13.6 1.4 8.8 0.5 3.9 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) Mod_r PF07200.8 gi|307595172|ref|YP_003901489.1| - 0.36 10.7 10.9 0.045 13.6 2.0 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein V_ATPase_I PF01496.14 gi|307595172|ref|YP_003901489.1| - 0.4 8.4 3.8 0.49 8.1 2.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family eIF-4B PF06273.6 gi|307595172|ref|YP_003901489.1| - 0.46 9.1 6.4 0.61 8.7 4.4 1.1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B DUF972 PF06156.8 gi|307595172|ref|YP_003901489.1| - 0.54 10.6 11.7 1.3 9.4 8.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF972) IncA PF04156.9 gi|307595172|ref|YP_003901489.1| - 0.6 9.6 7.0 0.9 9.0 4.8 1.2 1 0 0 1 1 1 0 IncA protein THOC7 PF05615.8 gi|307595172|ref|YP_003901489.1| - 0.71 10.1 15.9 3.5 7.8 4.8 2.2 1 1 1 2 2 2 0 Tho complex subunit 7 Syntaxin-6_N PF09177.6 gi|307595172|ref|YP_003901489.1| - 0.9 9.9 7.7 5 7.5 3.7 2.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.17 gi|307595172|ref|YP_003901489.1| - 0.91 9.5 12.4 5 7.1 8.6 2.1 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain CENP-H PF05837.7 gi|307595172|ref|YP_003901489.1| - 1 9.5 10.5 0.52 10.5 4.6 2.1 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Phlebovirus_NSM PF07246.6 gi|307595172|ref|YP_003901489.1| - 1.1 8.3 8.9 1.8 7.6 6.2 1.3 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M K167R PF08065.7 gi|307595172|ref|YP_003901489.1| - 1.6 8.8 7.8 1 9.4 1.1 2.2 1 1 1 2 2 2 0 K167R (NUC007) repeat Atg14 PF10186.4 gi|307595172|ref|YP_003901489.1| - 2.9 6.7 8.8 4.3 6.1 6.1 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 YtxH PF12732.2 gi|307595172|ref|YP_003901489.1| - 4 7.8 11.5 21 5.5 8.0 2.2 1 1 0 1 1 1 0 YtxH-like protein TMPIT PF07851.8 gi|307595172|ref|YP_003901489.1| - 4.4 6.2 6.8 6.6 5.7 4.7 1.2 1 0 0 1 1 1 0 TMPIT-like protein RPN7 PF10602.4 gi|307595172|ref|YP_003901489.1| - 5.4 6.3 9.9 21 4.4 6.8 1.9 1 1 0 1 1 1 0 26S proteasome subunit RPN7 DUF4140 PF13600.1 gi|307595172|ref|YP_003901489.1| - 5.4 7.5 7.3 2.3 8.7 2.0 2.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4446 PF14584.1 gi|307595172|ref|YP_003901489.1| - 7.5 6.3 7.6 2.2e+02 1.6 5.3 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) DUF2203 PF09969.4 gi|307595172|ref|YP_003901489.1| - 8.2 6.6 8.2 39 4.5 5.7 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) COG2 PF06148.6 gi|307595172|ref|YP_003901489.1| - 9.8 6.0 11.0 5.2 6.9 2.1 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF996 PF06195.8 gi|307595173|ref|YP_003901490.1| - 5.5e-15 55.5 22.4 2.6e-12 46.9 15.6 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF996) DUF4052 PF13261.1 gi|307595173|ref|YP_003901490.1| - 0.00028 20.3 5.7 0.00028 20.3 3.9 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF4052) SUR7 PF06687.7 gi|307595173|ref|YP_003901490.1| - 6.5 6.2 14.7 2 7.9 1.8 2.3 2 0 0 2 2 2 0 SUR7/PalI family CENP-F_leu_zip PF10473.4 gi|307595174|ref|YP_003901491.1| - 0.0023 17.8 0.1 0.0042 16.9 0.1 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1479 PF07350.7 gi|307595174|ref|YP_003901491.1| - 0.0092 14.5 0.0 0.011 14.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1479) Hema_stalk PF08720.5 gi|307595174|ref|YP_003901491.1| - 0.015 14.8 0.1 0.021 14.3 0.1 1.3 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk Reo_sigmaC PF04582.7 gi|307595174|ref|YP_003901491.1| - 0.035 13.3 0.0 0.041 13.0 0.0 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein HrpB7 PF09486.5 gi|307595174|ref|YP_003901491.1| - 0.042 13.7 0.0 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) Spc7 PF08317.6 gi|307595174|ref|YP_003901491.1| - 0.043 12.4 0.0 0.076 11.6 0.0 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Filament PF00038.16 gi|307595174|ref|YP_003901491.1| - 0.051 13.0 0.6 0.19 11.1 0.4 1.7 1 1 0 1 1 1 0 Intermediate filament protein IncA PF04156.9 gi|307595174|ref|YP_003901491.1| - 0.071 12.6 0.0 0.22 11.1 0.0 1.8 2 0 0 2 2 2 0 IncA protein FlaC_arch PF05377.6 gi|307595174|ref|YP_003901491.1| - 0.095 12.6 0.8 0.36 10.7 0.1 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) COG2 PF06148.6 gi|307595174|ref|YP_003901491.1| - 0.13 12.1 0.1 0.58 10.0 0.1 2.0 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4446 PF14584.1 gi|307595174|ref|YP_003901491.1| - 0.13 12.0 0.0 0.67 9.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Laminin_II PF06009.7 gi|307595174|ref|YP_003901491.1| - 0.15 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Laminin Domain II DUF3650 PF12368.3 gi|307595174|ref|YP_003901491.1| - 1.8 8.1 3.9 11 5.6 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3650) PaREP1 PF05942.6 gi|307595175|ref|YP_003901492.1| - 2.2e-24 85.5 0.0 4.3e-24 84.5 0.0 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF4102 PF13356.1 gi|307595175|ref|YP_003901492.1| - 0.052 13.4 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4102) Aldo_ket_red PF00248.16 gi|307595176|ref|YP_003901493.1| - 3e-39 134.5 0.0 3.4e-39 134.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family His_biosynth PF00977.16 gi|307595180|ref|YP_003901497.1| - 0.046 12.9 0.0 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein PP-binding PF00550.20 gi|307595180|ref|YP_003901497.1| - 0.093 13.0 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 Phosphopantetheine attachment site TPP_enzyme_C PF02775.16 gi|307595181|ref|YP_003901498.1| - 1.4e-31 109.0 0.2 3e-31 108.0 0.1 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|307595181|ref|YP_003901498.1| - 5.1e-14 51.9 0.6 8.5e-13 48.0 0.4 2.2 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal 2_5_RNA_ligase2 PF13563.1 gi|307595182|ref|YP_003901499.1| - 4.3e-13 49.2 0.0 5.2e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily CPDase PF07823.6 gi|307595182|ref|YP_003901499.1| - 0.0005 19.6 0.0 0.00079 18.9 0.0 1.2 1 0 0 1 1 1 1 Cyclic phosphodiesterase-like protein AKAP7_NLS PF10469.4 gi|307595182|ref|YP_003901499.1| - 0.00053 19.7 0.0 0.0016 18.1 0.0 1.8 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain LigT_PEase PF02834.11 gi|307595182|ref|YP_003901499.1| - 0.00067 19.5 0.0 0.079 12.9 0.0 2.3 2 0 0 2 2 2 1 LigT like Phosphoesterase Corona_NS2A PF05213.7 gi|307595182|ref|YP_003901499.1| - 0.11 11.8 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NS2A protein TF_Zn_Ribbon PF08271.7 gi|307595183|ref|YP_003901500.1| - 0.074 12.3 0.1 0.74 9.1 0.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding AAA_14 PF13173.1 gi|307595185|ref|YP_003901502.1| - 0.00035 20.4 0.1 0.074 12.9 0.0 2.5 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|307595185|ref|YP_003901502.1| - 0.0073 15.7 0.2 2.2 7.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.1 gi|307595185|ref|YP_003901502.1| - 0.015 15.4 0.2 0.61 10.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|307595185|ref|YP_003901502.1| - 0.026 14.4 0.4 0.09 12.7 0.2 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|307595185|ref|YP_003901502.1| - 0.036 13.7 0.2 17 5.0 0.0 3.1 1 1 1 3 3 3 0 NACHT domain AAA_28 PF13521.1 gi|307595185|ref|YP_003901502.1| - 0.045 13.7 0.1 0.091 12.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|307595185|ref|YP_003901502.1| - 0.087 13.6 0.6 0.26 12.0 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|307595185|ref|YP_003901502.1| - 0.11 12.3 0.2 0.23 11.2 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain SRPRB PF09439.5 gi|307595185|ref|YP_003901502.1| - 1.3 8.2 4.2 0.94 8.6 0.0 2.4 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit OrfB_Zn_ribbon PF07282.6 gi|307595186|ref|YP_003901503.1| - 8.8e-15 54.1 0.1 1.7e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|307595186|ref|YP_003901503.1| - 0.058 13.2 0.3 0.098 12.4 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|307595186|ref|YP_003901503.1| - 0.06 13.1 0.6 0.12 12.1 0.4 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|307595186|ref|YP_003901503.1| - 0.064 12.4 3.9 0.18 11.0 2.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|307595186|ref|YP_003901503.1| - 0.81 9.2 7.4 3 7.4 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|307595186|ref|YP_003901503.1| - 7.5 5.9 6.6 4.2 6.7 0.2 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding CbiZ PF01955.13 gi|307595187|ref|YP_003901504.1| - 2.5e-40 138.3 1.0 2.8e-40 138.1 0.7 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase DUF3222 PF11519.3 gi|307595187|ref|YP_003901504.1| - 0.11 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3222) OCD_Mu_crystall PF02423.10 gi|307595188|ref|YP_003901505.1| - 3.2e-66 223.2 0.6 4.3e-66 222.8 0.4 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|307595188|ref|YP_003901505.1| - 2.9e-08 33.8 0.0 4.6e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase PrpR_N PF06506.6 gi|307595188|ref|YP_003901505.1| - 0.0071 15.7 0.0 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 Propionate catabolism activator GFO_IDH_MocA PF01408.17 gi|307595188|ref|YP_003901505.1| - 0.0094 16.4 0.1 0.024 15.1 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|307595188|ref|YP_003901505.1| - 0.022 14.6 0.1 0.046 13.6 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.12 gi|307595188|ref|YP_003901505.1| - 0.024 15.0 0.0 0.068 13.6 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ClpS PF02617.12 gi|307595188|ref|YP_003901505.1| - 0.088 12.5 0.1 0.59 9.8 0.0 2.1 1 1 0 2 2 2 0 ATP-dependent Clp protease adaptor protein ClpS DUF973 PF06157.6 gi|307595189|ref|YP_003901506.1| - 0.00017 20.6 21.2 0.00027 20.0 14.7 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF973) NTP_transf_3 PF12804.2 gi|307595190|ref|YP_003901507.1| - 8.2e-43 146.2 0.0 1e-42 145.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|307595190|ref|YP_003901507.1| - 2.6e-07 30.4 0.0 3.7e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.11 gi|307595190|ref|YP_003901507.1| - 2.2e-05 23.5 0.0 4.4e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 Guanylyl transferase CofC like SNARE_assoc PF09335.6 gi|307595191|ref|YP_003901508.1| - 2.7e-20 72.8 12.0 2.7e-20 72.8 8.3 1.6 2 0 0 2 2 2 1 SNARE associated Golgi protein Gly-zipper_Omp PF13488.1 gi|307595191|ref|YP_003901508.1| - 0.025 14.2 0.4 0.052 13.1 0.3 1.5 1 0 0 1 1 1 0 Glycine zipper DUF2873 PF11395.3 gi|307595191|ref|YP_003901508.1| - 1.5 8.4 3.7 7.4 6.2 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2873) Glycos_trans_3N PF02885.12 gi|307595192|ref|YP_003901509.1| - 0.03 13.9 0.2 0.071 12.7 0.1 1.7 1 0 0 1 1 1 0 Glycosyl transferase family, helical bundle domain DUF4440 PF14534.1 gi|307595192|ref|YP_003901509.1| - 0.032 14.4 0.0 0.038 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4440) Arch_ATPase PF01637.13 gi|307595194|ref|YP_003901511.1| - 1.9e-40 139.0 0.1 2.5e-40 138.6 0.1 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|307595194|ref|YP_003901511.1| - 5.6e-09 35.9 0.2 0.0006 19.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|307595194|ref|YP_003901511.1| - 8e-07 29.2 0.0 7.2e-06 26.1 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|307595194|ref|YP_003901511.1| - 0.0002 21.5 0.0 0.00098 19.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|307595195|ref|YP_003901512.1| - 1.1e-35 123.4 0.0 1.5e-35 122.9 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|307595195|ref|YP_003901512.1| - 3.8e-13 49.7 0.0 1.4e-12 47.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|307595195|ref|YP_003901512.1| - 3.2e-10 39.9 0.0 2.1e-08 34.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307595195|ref|YP_003901512.1| - 3.3e-07 30.4 0.2 2.2e-06 27.7 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|307595195|ref|YP_003901512.1| - 4.3e-06 26.9 0.0 1.6e-05 25.0 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.9 gi|307595195|ref|YP_003901512.1| - 0.032 13.2 0.0 0.073 12.0 0.0 1.5 1 0 0 1 1 1 0 KAP family P-loop domain Whirly PF08536.6 gi|307595195|ref|YP_003901512.1| - 0.046 13.1 0.0 0.09 12.2 0.0 1.4 1 0 0 1 1 1 0 Whirly transcription factor Asp_protease_2 PF13650.1 gi|307595196|ref|YP_003901513.1| - 8.3e-07 29.4 0.0 2.6e-06 27.8 0.0 1.7 1 1 1 2 2 2 1 Aspartyl protease RVP PF00077.15 gi|307595196|ref|YP_003901513.1| - 0.00099 18.9 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|307595196|ref|YP_003901513.1| - 0.011 15.5 0.0 0.024 14.4 0.0 1.7 1 1 0 1 1 1 0 gag-polyprotein putative aspartyl protease PIN PF01850.16 gi|307595197|ref|YP_003901514.1| - 5.9e-08 33.0 0.3 7.4e-08 32.7 0.2 1.1 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|307595198|ref|YP_003901515.1| - 3e-09 36.3 0.4 4.1e-09 35.9 0.3 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF2959 PF11172.3 gi|307595198|ref|YP_003901515.1| - 0.027 14.2 0.1 0.029 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) HAS-barrel PF09378.5 gi|307595198|ref|YP_003901515.1| - 0.044 13.6 0.5 0.05 13.4 0.3 1.1 1 0 0 1 1 1 0 HAS barrel domain PaREP1 PF05942.6 gi|307595199|ref|YP_003901516.1| - 9.8e-20 70.5 0.0 1.6e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|307595200|ref|YP_003901517.1| - 1.2e-09 38.3 0.2 3.3e-09 36.9 0.1 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|307595200|ref|YP_003901517.1| - 1.7e-07 30.9 0.1 4.9e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF86 Nuc-transf PF10127.4 gi|307595200|ref|YP_003901517.1| - 0.014 14.7 0.0 0.025 13.9 0.0 1.4 1 0 0 1 1 1 0 Predicted nucleotidyltransferase PA14 PF07691.7 gi|307595201|ref|YP_003901518.1| - 2.6e-05 23.8 0.3 5.9e-05 22.7 0.2 1.6 1 0 0 1 1 1 1 PA14 domain DUF3040 PF11239.3 gi|307595203|ref|YP_003901520.1| - 0.0036 17.3 0.2 0.0036 17.3 0.1 2.6 3 0 0 3 3 3 1 Protein of unknown function (DUF3040) TPPK_C PF12555.3 gi|307595206|ref|YP_003901523.1| - 0.085 12.5 1.4 0.12 12.1 1.0 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal Antitoxin-MazE PF04014.13 gi|307595207|ref|YP_003901524.1| - 1.8e-06 27.5 0.2 0.0011 18.6 0.0 2.3 2 0 0 2 2 2 2 Antidote-toxin recognition MazE T2SF PF00482.18 gi|307595208|ref|YP_003901525.1| - 4.3e-10 39.5 4.6 4.3e-10 39.5 3.2 2.8 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|307595209|ref|YP_003901526.1| - 2.8e-49 167.4 0.0 4.2e-49 166.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|307595209|ref|YP_003901526.1| - 1.6e-06 28.4 0.0 3.1e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|307595209|ref|YP_003901526.1| - 1.6e-05 24.3 0.0 3.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|307595209|ref|YP_003901526.1| - 1.6e-05 25.0 0.0 6.8e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|307595209|ref|YP_003901526.1| - 8e-05 22.7 0.0 0.00021 21.3 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|307595209|ref|YP_003901526.1| - 8.5e-05 22.9 0.1 0.00016 22.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|307595209|ref|YP_003901526.1| - 0.00044 19.4 0.0 0.00083 18.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|307595209|ref|YP_003901526.1| - 0.003 17.1 0.0 0.011 15.3 0.0 2.0 3 0 0 3 3 3 1 AAA domain MMR_HSR1 PF01926.18 gi|307595209|ref|YP_003901526.1| - 0.0035 17.2 0.0 0.0076 16.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|307595209|ref|YP_003901526.1| - 0.0042 16.7 0.0 0.012 15.3 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain cobW PF02492.14 gi|307595209|ref|YP_003901526.1| - 0.0046 16.4 0.0 0.0073 15.7 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|307595209|ref|YP_003901526.1| - 0.0059 16.0 0.0 0.021 14.2 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|307595209|ref|YP_003901526.1| - 0.0082 16.9 0.0 0.032 15.0 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|307595209|ref|YP_003901526.1| - 0.017 15.2 0.0 0.041 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|307595209|ref|YP_003901526.1| - 0.025 14.0 0.9 0.065 12.6 0.0 2.0 3 0 0 3 3 2 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|307595209|ref|YP_003901526.1| - 0.035 13.8 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|307595209|ref|YP_003901526.1| - 0.038 13.9 0.0 0.069 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|307595209|ref|YP_003901526.1| - 0.045 14.0 0.0 0.09 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|307595209|ref|YP_003901526.1| - 0.046 13.4 0.0 0.084 12.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|307595209|ref|YP_003901526.1| - 0.049 12.8 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.12 gi|307595209|ref|YP_003901526.1| - 0.054 12.9 0.1 0.15 11.4 0.1 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.7 gi|307595209|ref|YP_003901526.1| - 0.063 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|307595209|ref|YP_003901526.1| - 0.067 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|307595209|ref|YP_003901526.1| - 0.082 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_14 PF13173.1 gi|307595209|ref|YP_003901526.1| - 0.083 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|307595209|ref|YP_003901526.1| - 0.091 12.6 0.1 0.43 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|307595209|ref|YP_003901526.1| - 0.11 11.1 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|307595209|ref|YP_003901526.1| - 0.12 11.4 0.0 0.3 10.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin T2SF PF00482.18 gi|307595210|ref|YP_003901527.1| - 4.2e-06 26.6 2.3 4.2e-06 26.6 1.6 2.6 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF2419 PF10343.4 gi|307595210|ref|YP_003901527.1| - 0.016 14.4 0.0 0.021 14.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2419) Ssl1 PF04056.9 gi|307595210|ref|YP_003901527.1| - 0.031 13.8 0.1 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 Ssl1-like GPI-anchored PF10342.4 gi|307595211|ref|YP_003901528.1| - 0.0019 18.6 4.2 0.0046 17.4 0.5 2.1 1 1 1 2 2 2 1 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Arch_flagellin PF01917.11 gi|307595211|ref|YP_003901528.1| - 0.1 12.2 11.3 4 7.0 0.0 2.2 1 1 1 2 2 2 0 Archaebacterial flagellin Tmemb_9 PF05434.6 gi|307595211|ref|YP_003901528.1| - 0.13 11.9 0.1 0.18 11.5 0.1 1.2 1 0 0 1 1 1 0 TMEM9 DUF1628 PF07790.6 gi|307595211|ref|YP_003901528.1| - 2.2 9.1 7.5 4.9 7.9 5.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) Class_IIIsignal PF04021.7 gi|307595212|ref|YP_003901529.1| - 6.3 6.6 12.7 1.6 8.5 3.9 3.0 3 0 0 3 3 3 0 Class III signal peptide ACT PF01842.20 gi|307595214|ref|YP_003901531.1| - 4.3e-06 26.0 0.1 8.8e-06 25.0 0.1 1.6 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|307595214|ref|YP_003901531.1| - 0.052 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 ACT domain ACT_4 PF13291.1 gi|307595214|ref|YP_003901531.1| - 0.1 12.9 0.7 0.24 11.7 0.2 1.9 2 1 0 2 2 2 0 ACT domain PAE PF03283.8 gi|307595215|ref|YP_003901532.1| - 2.2e-09 36.4 0.0 5.4e-09 35.1 0.0 1.5 1 1 0 1 1 1 1 Pectinacetylesterase Abhydrolase_3 PF07859.8 gi|307595215|ref|YP_003901532.1| - 0.063 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Fer4 PF00037.22 gi|307595216|ref|YP_003901533.1| - 1.4e-11 43.4 12.5 3.7e-06 26.3 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307595216|ref|YP_003901533.1| - 3.8e-10 39.4 5.7 5.9e-10 38.8 3.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307595216|ref|YP_003901533.1| - 1.6e-09 38.0 9.5 3.9e-09 36.7 6.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307595216|ref|YP_003901533.1| - 6e-09 36.5 4.3 0.00065 20.3 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|307595216|ref|YP_003901533.1| - 9.1e-09 35.4 19.9 9.3e-07 29.0 7.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307595216|ref|YP_003901533.1| - 1.1e-08 34.6 12.8 0.00018 21.2 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307595216|ref|YP_003901533.1| - 1.8e-08 34.0 17.7 1.5e-06 27.8 7.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307595216|ref|YP_003901533.1| - 2.1e-07 31.1 0.7 0.02 15.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307595216|ref|YP_003901533.1| - 2.8e-07 30.0 10.7 0.0012 18.6 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|307595216|ref|YP_003901533.1| - 2.2e-06 27.6 27.7 0.00031 20.6 7.7 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307595216|ref|YP_003901533.1| - 4.2e-06 26.6 10.4 0.01 16.0 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|307595216|ref|YP_003901533.1| - 9.4e-06 25.9 3.4 0.033 14.5 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|307595216|ref|YP_003901533.1| - 0.00012 22.4 18.2 0.02 15.3 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|307595216|ref|YP_003901533.1| - 0.00061 20.2 7.0 0.22 12.1 2.0 2.8 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|307595216|ref|YP_003901533.1| - 0.0011 18.5 5.1 0.045 13.3 0.3 2.2 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_5 PF12801.2 gi|307595216|ref|YP_003901533.1| - 0.029 14.1 2.4 0.35 10.7 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|307595216|ref|YP_003901533.1| - 0.31 11.4 14.3 0.38 11.1 1.6 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain HTH_IclR PF09339.5 gi|307595217|ref|YP_003901534.1| - 2e-07 30.4 0.0 6.2e-07 28.9 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|307595217|ref|YP_003901534.1| - 2.5e-06 27.0 0.3 0.00057 19.5 0.0 3.2 3 1 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|307595217|ref|YP_003901534.1| - 0.00013 21.2 0.2 0.0051 16.1 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|307595217|ref|YP_003901534.1| - 0.00033 20.2 0.0 0.00079 19.0 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|307595217|ref|YP_003901534.1| - 0.0011 18.6 0.0 0.0084 15.7 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|307595217|ref|YP_003901534.1| - 0.0042 17.3 0.0 0.0095 16.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|307595217|ref|YP_003901534.1| - 0.013 15.3 0.0 0.091 12.5 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_5 PF01022.15 gi|307595217|ref|YP_003901534.1| - 0.023 14.3 0.0 0.061 13.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF1803 PF08820.5 gi|307595217|ref|YP_003901534.1| - 0.03 14.0 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) Whib PF02467.11 gi|307595217|ref|YP_003901534.1| - 0.083 13.1 0.1 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Transcription factor WhiB HTH_36 PF13730.1 gi|307595217|ref|YP_003901534.1| - 0.11 12.6 0.0 0.49 10.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.8 gi|307595217|ref|YP_003901534.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain CoA_binding PF02629.14 gi|307595218|ref|YP_003901535.1| - 7.9e-30 103.2 5.3 9.5e-30 102.9 0.5 2.4 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|307595218|ref|YP_003901535.1| - 1.2e-16 60.6 0.1 1.9e-16 60.0 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|307595218|ref|YP_003901535.1| - 6.5e-13 48.4 0.0 3.7e-12 46.0 0.0 1.9 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|307595218|ref|YP_003901535.1| - 1.2e-10 41.5 0.0 2.3e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|307595218|ref|YP_003901535.1| - 0.00062 20.2 0.0 0.0017 18.8 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|307595218|ref|YP_003901535.1| - 0.19 11.6 3.3 0.37 10.7 0.1 2.4 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus ATP-grasp_2 PF08442.5 gi|307595219|ref|YP_003901536.1| - 2.3e-52 177.3 0.2 5.9e-52 175.9 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|307595219|ref|YP_003901536.1| - 1.3e-19 70.3 0.7 2e-19 69.6 0.5 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|307595219|ref|YP_003901536.1| - 6.2e-09 35.4 0.7 4e-08 32.7 0.1 2.4 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|307595219|ref|YP_003901536.1| - 0.0051 16.5 0.0 0.013 15.2 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain DUF2577 PF10844.3 gi|307595219|ref|YP_003901536.1| - 0.018 15.1 0.0 0.7 9.9 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2577) OKR_DC_1_N PF03709.10 gi|307595219|ref|YP_003901536.1| - 0.078 13.0 0.0 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain TrmB PF01978.14 gi|307595222|ref|YP_003901539.1| - 4.7e-09 35.8 0.1 3.5e-08 33.0 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|307595222|ref|YP_003901539.1| - 3.1e-05 23.2 0.0 0.00016 21.0 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|307595222|ref|YP_003901539.1| - 0.00051 19.6 0.0 0.0011 18.5 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|307595222|ref|YP_003901539.1| - 0.00065 19.2 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|307595222|ref|YP_003901539.1| - 0.00089 18.8 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|307595222|ref|YP_003901539.1| - 0.011 15.2 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|307595222|ref|YP_003901539.1| - 0.022 14.4 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|307595222|ref|YP_003901539.1| - 0.023 14.3 0.0 0.057 13.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|307595222|ref|YP_003901539.1| - 0.024 14.6 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|307595222|ref|YP_003901539.1| - 0.042 13.5 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|307595222|ref|YP_003901539.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain AdoHcyase PF05221.12 gi|307595223|ref|YP_003901540.1| - 2.4e-69 233.2 0.0 2.8e-69 233.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|307595223|ref|YP_003901540.1| - 2.4e-53 180.2 0.5 3.9e-53 179.6 0.3 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|307595223|ref|YP_003901540.1| - 3.4e-07 29.5 0.1 6.5e-07 28.6 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|307595223|ref|YP_003901540.1| - 8.6e-06 25.2 0.2 1.7e-05 24.2 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|307595223|ref|YP_003901540.1| - 0.062 13.2 0.1 0.27 11.2 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|307595223|ref|YP_003901540.1| - 0.11 12.1 0.5 0.21 11.1 0.3 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ABC_tran PF00005.22 gi|307595224|ref|YP_003901541.1| - 2.4e-31 108.8 0.0 4e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307595224|ref|YP_003901541.1| - 1.3e-08 35.1 0.0 1.7e-05 24.9 0.0 2.4 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|307595224|ref|YP_003901541.1| - 4.6e-06 26.5 0.0 1.3e-05 25.0 0.0 1.9 1 0 0 1 1 1 1 TOBE domain AAA_15 PF13175.1 gi|307595224|ref|YP_003901541.1| - 0.00013 21.1 0.0 0.00039 19.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|307595224|ref|YP_003901541.1| - 0.00067 18.3 0.0 1.1 7.7 0.0 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|307595224|ref|YP_003901541.1| - 0.0015 18.5 0.0 0.0045 17.0 0.0 1.8 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|307595224|ref|YP_003901541.1| - 0.0029 17.7 0.1 0.015 15.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|307595224|ref|YP_003901541.1| - 0.0038 16.4 0.0 0.0064 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|307595224|ref|YP_003901541.1| - 0.018 14.7 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|307595224|ref|YP_003901541.1| - 0.018 14.7 0.1 0.06 13.1 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|307595224|ref|YP_003901541.1| - 0.026 14.7 0.1 0.3 11.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|307595224|ref|YP_003901541.1| - 0.027 14.4 0.1 0.14 12.0 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|307595224|ref|YP_003901541.1| - 0.03 13.8 0.0 0.079 12.4 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|307595224|ref|YP_003901541.1| - 0.037 13.4 0.1 0.89 8.9 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|307595224|ref|YP_003901541.1| - 0.044 13.3 0.0 0.14 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|307595224|ref|YP_003901541.1| - 0.067 12.5 0.0 0.62 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|307595224|ref|YP_003901541.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain OTCace_N PF02729.16 gi|307595226|ref|YP_003901543.1| - 2.7e-44 150.2 0.0 3.9e-44 149.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|307595226|ref|YP_003901543.1| - 1.6e-34 119.0 0.0 2.6e-34 118.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|307595227|ref|YP_003901544.1| - 4.5e-36 122.7 0.4 5.9e-36 122.3 0.3 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|307595227|ref|YP_003901544.1| - 2.7e-21 74.7 0.5 2.7e-21 74.7 0.4 1.5 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Pribosyltran PF00156.22 gi|307595228|ref|YP_003901545.1| - 4.3e-20 71.6 1.6 1e-19 70.4 1.1 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|307595228|ref|YP_003901545.1| - 0.0044 16.2 0.0 0.0058 15.8 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Vac14_Fig4_bd PF11916.3 gi|307595228|ref|YP_003901545.1| - 0.075 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Vacuolar protein 14 C-terminal Fig4p binding PRTase_2 PF15609.1 gi|307595228|ref|YP_003901545.1| - 0.096 11.9 0.1 0.18 11.0 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosyl transferase CPT PF07931.7 gi|307595228|ref|YP_003901545.1| - 0.12 11.9 0.7 2.2 7.8 0.1 2.0 1 1 1 2 2 2 0 Chloramphenicol phosphotransferase-like protein DHO_dh PF01180.16 gi|307595229|ref|YP_003901546.1| - 1.8e-43 148.6 0.0 2.4e-43 148.1 0.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Peptidase_M50 PF02163.17 gi|307595230|ref|YP_003901547.1| - 6.2e-10 38.3 14.3 6.2e-10 38.3 9.9 2.3 2 1 0 2 2 2 1 Peptidase family M50 Phage_holin_3 PF05106.7 gi|307595230|ref|YP_003901547.1| - 5.6 7.0 6.5 1.8 8.5 1.5 2.1 1 1 1 2 2 2 0 Phage holin family (Lysis protein S) FA_desaturase PF00487.19 gi|307595230|ref|YP_003901547.1| - 7.5 5.9 21.1 0.89 8.9 4.7 3.0 1 1 2 3 3 3 0 Fatty acid desaturase DUF4346 PF14251.1 gi|307595231|ref|YP_003901548.1| - 0.05 13.3 0.0 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4346) PUA PF01472.15 gi|307595231|ref|YP_003901548.1| - 0.071 12.8 0.0 0.23 11.2 0.0 1.8 1 0 0 1 1 1 0 PUA domain DUF996 PF06195.8 gi|307595232|ref|YP_003901549.1| - 0.00016 21.7 12.9 0.00016 21.7 8.9 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF996) DUF1356 PF07092.7 gi|307595232|ref|YP_003901549.1| - 0.0083 15.3 0.3 0.0083 15.3 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1356) 2-Hacid_dh_C PF02826.14 gi|307595234|ref|YP_003901551.1| - 2.4e-36 124.5 0.0 3.3e-36 124.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|307595234|ref|YP_003901551.1| - 3.2e-15 55.7 0.0 4e-15 55.4 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|307595234|ref|YP_003901551.1| - 0.0014 19.0 0.0 0.0088 16.4 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|307595234|ref|YP_003901551.1| - 0.022 14.5 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|307595234|ref|YP_003901551.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ribosomal_S14 PF00253.16 gi|307595235|ref|YP_003901552.1| - 1.1e-17 63.1 5.3 1.2e-17 62.9 3.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|307595235|ref|YP_003901552.1| - 0.00088 18.8 4.6 0.00088 18.8 3.2 1.5 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS DNA_RNApol_7kD PF03604.8 gi|307595235|ref|YP_003901552.1| - 0.008 15.6 2.9 0.26 10.7 0.4 2.3 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS91 PF14319.1 gi|307595235|ref|YP_003901552.1| - 0.011 15.1 0.3 0.012 15.1 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Ribosomal_L37ae PF01780.14 gi|307595235|ref|YP_003901552.1| - 0.035 13.9 0.5 0.04 13.7 0.4 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-CCHC_3 PF13917.1 gi|307595235|ref|YP_003901552.1| - 0.038 13.7 1.9 0.4 10.4 0.1 2.4 2 0 0 2 2 2 0 Zinc knuckle zf-HYPF PF07503.7 gi|307595235|ref|YP_003901552.1| - 0.083 12.3 2.0 1.1 8.6 0.1 2.1 2 0 0 2 2 2 0 HypF finger Zn_Tnp_IS1595 PF12760.2 gi|307595235|ref|YP_003901552.1| - 0.13 12.0 4.3 0.16 11.8 2.9 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|307595235|ref|YP_003901552.1| - 0.14 11.9 0.6 0.27 11.0 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon Mu-like_Com PF10122.4 gi|307595235|ref|YP_003901552.1| - 1 8.4 4.4 0.24 10.5 0.3 1.9 2 0 0 2 2 2 0 Mu-like prophage protein Com DUF1886 PF09171.5 gi|307595236|ref|YP_003901553.1| - 0.0024 16.9 0.0 0.0037 16.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) EndIII_4Fe-2S PF10576.4 gi|307595236|ref|YP_003901553.1| - 0.11 12.6 4.9 0.18 12.0 3.4 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.5 gi|307595236|ref|YP_003901553.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) DUF711 PF05167.7 gi|307595237|ref|YP_003901554.1| - 1.5e-57 195.1 0.0 1.9e-57 194.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) PNP_UDP_1 PF01048.15 gi|307595238|ref|YP_003901555.1| - 2e-37 128.4 0.2 2.4e-37 128.1 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF86 PF01934.12 gi|307595240|ref|YP_003901557.1| - 7.2e-18 64.3 0.1 1.2e-17 63.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|307595240|ref|YP_003901557.1| - 1.7e-11 44.2 0.1 3.4e-11 43.3 0.1 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|307595240|ref|YP_003901557.1| - 0.018 14.3 0.0 0.06 12.6 0.0 1.8 2 0 0 2 2 2 0 Predicted nucleotidyltransferase AmoA PF05145.7 gi|307595242|ref|YP_003901559.1| - 0.092 11.7 0.2 0.13 11.3 0.1 1.1 1 0 0 1 1 1 0 Putative ammonia monooxygenase PEGA PF08308.6 gi|307595242|ref|YP_003901559.1| - 0.11 12.2 0.2 0.52 10.1 0.0 2.1 2 0 0 2 2 2 0 PEGA domain Thg1 PF04446.7 gi|307595243|ref|YP_003901560.1| - 7.2e-21 74.2 0.0 1.1e-20 73.6 0.0 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase TENA_THI-4 PF03070.11 gi|307595244|ref|YP_003901561.1| - 6.4e-29 101.2 1.2 7.8e-29 100.9 0.8 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Imm16 PF15565.1 gi|307595244|ref|YP_003901561.1| - 0.025 14.4 0.0 0.73 9.7 0.0 2.3 2 0 0 2 2 2 0 Immunity protein 16 RhoGEF PF00621.15 gi|307595244|ref|YP_003901561.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 RhoGEF domain BLOC1_2 PF10046.4 gi|307595245|ref|YP_003901562.1| - 0.00023 21.2 0.1 0.00041 20.4 0.0 1.4 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.7 gi|307595245|ref|YP_003901562.1| - 0.0014 18.8 0.1 0.03 14.5 0.0 2.1 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein HSBP1 PF06825.7 gi|307595245|ref|YP_003901562.1| - 0.002 17.6 12.4 0.22 11.1 1.1 3.5 1 1 2 3 3 3 2 Heat shock factor binding protein 1 DUF603 PF04645.7 gi|307595245|ref|YP_003901562.1| - 0.0066 16.4 0.4 0.0089 15.9 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF603 BAR PF03114.13 gi|307595245|ref|YP_003901562.1| - 0.0079 15.7 0.1 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 BAR domain Baculo_PEP_C PF04513.7 gi|307595245|ref|YP_003901562.1| - 0.011 15.5 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Hemagglutinin PF00509.13 gi|307595245|ref|YP_003901562.1| - 0.011 13.8 0.2 0.013 13.6 0.2 1.1 1 0 0 1 1 1 0 Haemagglutinin DUF1664 PF07889.7 gi|307595245|ref|YP_003901562.1| - 0.012 15.4 0.4 0.027 14.2 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) UPF0128 PF03673.8 gi|307595245|ref|YP_003901562.1| - 0.014 14.6 0.0 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0128) HalX PF08663.5 gi|307595245|ref|YP_003901562.1| - 0.016 15.1 0.6 0.068 13.1 0.4 2.1 1 1 0 1 1 1 0 HalX domain MutS_IV PF05190.13 gi|307595245|ref|YP_003901562.1| - 0.017 15.2 0.4 0.17 12.0 0.1 2.2 1 1 1 2 2 2 0 MutS family domain IV LPP PF04728.8 gi|307595245|ref|YP_003901562.1| - 0.021 14.5 0.4 3 7.6 0.0 2.5 1 1 1 2 2 2 0 Lipoprotein leucine-zipper DUF2884 PF11101.3 gi|307595245|ref|YP_003901562.1| - 0.029 13.7 0.6 0.094 12.0 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2884) AIP3 PF03915.8 gi|307595245|ref|YP_003901562.1| - 0.035 13.0 0.1 0.04 12.8 0.1 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 DUF3921 PF13060.1 gi|307595245|ref|YP_003901562.1| - 0.041 13.7 1.0 6.2 6.7 0.1 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3921) Atg14 PF10186.4 gi|307595245|ref|YP_003901562.1| - 0.059 12.3 0.0 0.064 12.2 0.0 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 MtrG PF04210.8 gi|307595245|ref|YP_003901562.1| - 0.061 12.9 2.4 6.7 6.4 0.1 2.9 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF1241 PF06840.6 gi|307595245|ref|YP_003901562.1| - 0.073 12.3 0.3 0.1 11.8 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1241) Osmo_CC PF08946.5 gi|307595245|ref|YP_003901562.1| - 0.082 12.9 0.3 17 5.5 0.0 2.4 1 1 1 2 2 2 0 Osmosensory transporter coiled coil CorA PF01544.13 gi|307595245|ref|YP_003901562.1| - 0.091 11.7 0.3 0.11 11.4 0.2 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein UBN2 PF14223.1 gi|307595245|ref|YP_003901562.1| - 0.097 12.4 0.9 1.1 9.0 0.2 2.1 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type Gp-FAR-1 PF05823.7 gi|307595245|ref|YP_003901562.1| - 0.099 12.5 0.3 0.13 12.2 0.2 1.2 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) LMP PF04778.7 gi|307595245|ref|YP_003901562.1| - 0.11 12.2 0.1 0.16 11.6 0.0 1.3 1 1 0 1 1 1 0 LMP repeated region MRF_C1 PF13887.1 gi|307595245|ref|YP_003901562.1| - 0.31 10.0 4.2 34 3.5 0.0 3.7 3 1 0 3 3 3 0 Myelin gene regulatory factor -C-terminal domain 1 DUF1628 PF07790.6 gi|307595246|ref|YP_003901563.1| - 0.0073 17.0 3.3 0.012 16.3 2.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Vpu PF00558.14 gi|307595246|ref|YP_003901563.1| - 0.056 12.9 2.8 0.097 12.2 1.9 1.3 1 0 0 1 1 1 0 Vpu protein Arif-1 PF06770.6 gi|307595246|ref|YP_003901563.1| - 0.099 12.0 0.7 0.12 11.7 0.5 1.3 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) MacB_PCD PF12704.2 gi|307595246|ref|YP_003901563.1| - 1.8 8.0 5.0 1.9 8.0 3.5 1.3 1 1 0 1 1 1 0 MacB-like periplasmic core domain EamA PF00892.15 gi|307595247|ref|YP_003901564.1| - 5.3e-32 110.5 32.0 4.1e-18 65.6 10.5 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|307595247|ref|YP_003901564.1| - 2.4e-08 34.1 27.0 7.3e-05 22.9 6.0 2.7 2 1 1 3 3 3 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|307595247|ref|YP_003901564.1| - 0.00017 21.2 22.4 0.021 14.4 5.3 2.5 2 1 0 2 2 2 2 Triose-phosphate Transporter family UAA PF08449.6 gi|307595247|ref|YP_003901564.1| - 0.21 10.4 12.4 0.034 13.0 2.8 2.2 2 0 0 2 2 2 0 UAA transporter family Lactamase_B PF00753.22 gi|307595249|ref|YP_003901566.1| - 3.9e-28 98.4 1.6 4.7e-28 98.1 1.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|307595249|ref|YP_003901566.1| - 6.4e-05 22.5 0.0 8.3e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|307595249|ref|YP_003901566.1| - 0.0051 16.5 0.0 0.0063 16.2 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Cse1 PF08506.5 gi|307595249|ref|YP_003901566.1| - 0.13 10.7 0.0 0.22 10.0 0.0 1.2 1 0 0 1 1 1 0 Cse1 DUF973 PF06157.6 gi|307595252|ref|YP_003901569.1| - 6.8e-07 28.5 40.0 6.8e-07 28.5 27.7 2.8 3 1 1 4 4 4 1 Protein of unknown function (DUF973) PaREP1 PF05942.6 gi|307595252|ref|YP_003901569.1| - 0.025 14.4 0.0 0.042 13.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|307595253|ref|YP_003901570.1| - 0.0012 19.1 0.5 0.0019 18.4 0.3 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|307595254|ref|YP_003901571.1| - 7e-16 57.9 0.0 9.2e-16 57.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF2250 PF10007.4 gi|307595254|ref|YP_003901571.1| - 0.019 14.8 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Phage_Gp19 PF09355.5 gi|307595254|ref|YP_003901571.1| - 0.019 14.7 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Phage protein Gp19/Gp15/Gp42 Creatininase PF02633.9 gi|307595255|ref|YP_003901572.1| - 1.6e-67 227.0 0.1 1.8e-67 226.9 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF4234 PF14018.1 gi|307595257|ref|YP_003901574.1| - 0.093 12.4 2.5 0.099 12.3 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4234) ODV-E18 PF10717.4 gi|307595257|ref|YP_003901574.1| - 0.21 11.0 1.2 0.22 10.9 0.9 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF912 PF06024.7 gi|307595257|ref|YP_003901574.1| - 0.35 10.9 2.6 0.33 11.0 1.8 1.0 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF4307 PF14155.1 gi|307595257|ref|YP_003901574.1| - 0.41 10.4 3.8 0.45 10.3 2.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) MHYT PF03707.11 gi|307595257|ref|YP_003901574.1| - 0.44 10.7 2.2 0.46 10.6 1.5 1.1 1 0 0 1 1 1 0 Bacterial signalling protein N terminal repeat DUF3753 PF12575.3 gi|307595257|ref|YP_003901574.1| - 0.78 9.5 3.8 0.89 9.4 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3753) DUF3094 PF11293.3 gi|307595257|ref|YP_003901574.1| - 6.3 6.3 8.6 9 5.8 5.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3094) HAMP PF00672.20 gi|307595257|ref|YP_003901574.1| - 9.1 6.5 8.8 11 6.2 6.1 1.2 1 0 0 1 1 1 0 HAMP domain Aldedh PF00171.17 gi|307595258|ref|YP_003901575.1| - 7.8e-157 522.2 0.0 8.8e-157 522.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Ribonuc_P_40 PF08584.6 gi|307595258|ref|YP_003901575.1| - 0.026 13.5 0.0 0.5 9.3 0.0 2.1 2 0 0 2 2 2 0 Ribonuclease P 40kDa (Rpp40) subunit LuxC PF05893.9 gi|307595258|ref|YP_003901575.1| - 0.041 12.5 0.0 0.067 11.9 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) GYD PF08734.6 gi|307595258|ref|YP_003901575.1| - 0.079 12.6 0.1 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 GYD domain Oleosin PF01277.12 gi|307595259|ref|YP_003901576.1| - 0.15 11.6 2.4 0.17 11.4 1.6 1.1 1 0 0 1 1 1 0 Oleosin DUF165 PF02592.10 gi|307595260|ref|YP_003901577.1| - 2.1e-28 99.3 8.2 2.1e-28 99.3 5.7 1.6 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 MtrG PF04210.8 gi|307595261|ref|YP_003901578.1| - 0.018 14.7 0.6 0.1 12.2 0.1 2.0 1 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G LETM1 PF07766.8 gi|307595261|ref|YP_003901578.1| - 0.018 14.1 0.1 0.021 13.8 0.0 1.0 1 0 0 1 1 1 0 LETM1-like protein ApoLp-III PF07464.6 gi|307595262|ref|YP_003901579.1| - 2.4e-05 24.4 0.1 2.5e-05 24.3 0.1 1.1 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) DUF1664 PF07889.7 gi|307595262|ref|YP_003901579.1| - 0.00013 21.7 0.7 0.29 10.9 0.8 2.3 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.7 gi|307595262|ref|YP_003901579.1| - 0.00026 20.8 0.0 0.36 10.6 0.0 2.0 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus HalX PF08663.5 gi|307595262|ref|YP_003901579.1| - 0.0011 18.8 2.9 2.4 8.2 0.2 3.3 1 1 3 4 4 4 1 HalX domain MtrG PF04210.8 gi|307595262|ref|YP_003901579.1| - 0.0018 17.8 7.1 0.37 10.4 0.1 3.3 1 1 2 3 3 3 1 Tetrahydromethanopterin S-methyltransferase, subunit G AAA_13 PF13166.1 gi|307595262|ref|YP_003901579.1| - 0.002 16.7 0.2 0.0022 16.5 0.2 1.0 1 0 0 1 1 1 1 AAA domain Phage_Mu_Gam PF07352.7 gi|307595262|ref|YP_003901579.1| - 0.0021 17.6 1.2 0.12 11.9 0.0 2.0 2 0 0 2 2 2 1 Bacteriophage Mu Gam like protein FliD_C PF07195.7 gi|307595262|ref|YP_003901579.1| - 0.0023 17.2 0.3 0.49 9.6 0.0 2.1 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus DUF2046 PF09755.4 gi|307595262|ref|YP_003901579.1| - 0.0044 15.9 0.1 0.0045 15.9 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein H4 (DUF2046) GAS PF13851.1 gi|307595262|ref|YP_003901579.1| - 0.0058 15.8 0.5 1 8.4 0.0 1.9 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding DUF4164 PF13747.1 gi|307595262|ref|YP_003901579.1| - 0.0061 16.6 3.1 1.6 8.9 2.2 3.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4164) Phasin PF05597.6 gi|307595262|ref|YP_003901579.1| - 0.007 16.1 1.4 0.014 15.1 0.9 1.5 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) NPV_P10 PF05531.7 gi|307595262|ref|YP_003901579.1| - 0.0082 16.3 0.3 0.59 10.4 0.0 2.7 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein DUF4407 PF14362.1 gi|307595262|ref|YP_003901579.1| - 0.012 14.6 0.0 0.15 11.0 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) HSCB_C PF07743.8 gi|307595262|ref|YP_003901579.1| - 0.012 16.0 1.9 4.9 7.6 1.3 2.7 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain BLOC1_2 PF10046.4 gi|307595262|ref|YP_003901579.1| - 0.018 15.1 2.8 0.38 10.9 1.8 2.2 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin PF00804.20 gi|307595262|ref|YP_003901579.1| - 0.019 15.1 2.5 0.13 12.3 1.7 2.0 1 1 0 1 1 1 0 Syntaxin DUF4631 PF15450.1 gi|307595262|ref|YP_003901579.1| - 0.022 13.0 0.4 0.023 13.0 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4631) Laminin_II PF06009.7 gi|307595262|ref|YP_003901579.1| - 0.022 14.5 1.4 0.036 13.8 1.0 1.5 1 1 0 1 1 1 0 Laminin Domain II GldM_N PF12081.3 gi|307595262|ref|YP_003901579.1| - 0.022 14.2 0.3 0.062 12.8 0.1 1.7 1 1 1 2 2 2 0 GldM N-terminal domain MerR-DNA-bind PF09278.6 gi|307595262|ref|YP_003901579.1| - 0.028 14.8 1.7 12 6.4 0.0 3.3 2 1 1 3 3 3 0 MerR, DNA binding DUF4618 PF15397.1 gi|307595262|ref|YP_003901579.1| - 0.046 13.0 0.1 0.07 12.4 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) LXG PF04740.7 gi|307595262|ref|YP_003901579.1| - 0.047 13.4 0.5 0.065 13.0 0.3 1.2 1 0 0 1 1 1 0 LXG domain of WXG superfamily EzrA PF06160.7 gi|307595262|ref|YP_003901579.1| - 0.058 11.5 1.1 0.15 10.1 0.3 1.8 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA RmuC PF02646.11 gi|307595262|ref|YP_003901579.1| - 0.059 12.2 0.1 0.79 8.5 0.0 2.0 1 1 1 2 2 2 0 RmuC family Apolipoprotein PF01442.13 gi|307595262|ref|YP_003901579.1| - 0.059 12.8 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF4455 PF14643.1 gi|307595262|ref|YP_003901579.1| - 0.064 11.8 0.5 0.17 10.4 0.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4455) Toxin_trans PF07952.7 gi|307595262|ref|YP_003901579.1| - 0.065 12.1 2.3 0.81 8.5 1.3 2.1 1 1 1 2 2 2 0 Clostridium neurotoxin, Translocation domain COG2 PF06148.6 gi|307595262|ref|YP_003901579.1| - 0.071 12.9 0.2 1.5 8.6 0.2 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HrpB7 PF09486.5 gi|307595262|ref|YP_003901579.1| - 0.089 12.7 0.4 0.68 9.8 0.1 2.0 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) EDR1 PF14381.1 gi|307595262|ref|YP_003901579.1| - 0.22 11.0 1.2 0.92 9.0 0.9 1.8 1 1 1 2 2 2 0 Ethylene-responsive protein kinase Le-CTR1 DUF1690 PF07956.6 gi|307595262|ref|YP_003901579.1| - 0.27 11.2 2.1 2.5 8.0 1.1 2.0 1 1 2 3 3 3 0 Protein of Unknown function (DUF1690) Hemagglutinin PF00509.13 gi|307595262|ref|YP_003901579.1| - 0.46 8.5 2.3 8.1 4.4 0.8 2.2 1 1 2 3 3 3 0 Haemagglutinin HSBP1 PF06825.7 gi|307595262|ref|YP_003901579.1| - 0.52 9.9 8.7 1.6e+02 1.9 6.1 3.7 1 1 0 1 1 1 0 Heat shock factor binding protein 1 Prefoldin_3 PF13758.1 gi|307595262|ref|YP_003901579.1| - 0.53 10.1 3.1 1.5 8.6 1.3 2.2 1 1 0 1 1 1 0 Prefoldin subunit XhlA PF10779.4 gi|307595262|ref|YP_003901579.1| - 2.3 8.1 5.3 11 5.9 3.5 2.2 1 1 0 1 1 1 0 Haemolysin XhlA ATP-synt_E_2 PF08112.6 gi|307595262|ref|YP_003901579.1| - 3.6 7.7 10.2 0.33 11.0 1.2 2.8 2 2 1 3 3 3 0 ATP synthase epsilon subunit 5-FTHF_cyc-lig PF01812.15 gi|307595263|ref|YP_003901580.1| - 2.6e-28 99.0 0.0 3e-28 98.8 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family DUF911 PF06023.7 gi|307595265|ref|YP_003901582.1| - 3.2e-18 65.9 0.2 1.2e-16 60.8 0.0 2.4 2 1 0 2 2 2 1 Archaeal protein of unknown function (DUF911) PDDEXK_1 PF12705.2 gi|307595265|ref|YP_003901582.1| - 0.00029 20.3 0.1 0.26 10.6 0.1 2.1 1 1 0 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|307595265|ref|YP_003901582.1| - 0.00082 19.3 0.0 0.0093 15.9 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF83 DUF1876 PF08962.6 gi|307595265|ref|YP_003901582.1| - 0.12 12.1 0.1 2.1 8.2 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1876) DUF2276 PF10040.4 gi|307595266|ref|YP_003901583.1| - 3.9e-20 72.2 0.4 5.5e-19 68.5 0.2 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2276) Cas_DxTHG PF09455.5 gi|307595267|ref|YP_003901584.1| - 4.3e-23 82.0 0.0 1.9e-18 66.7 0.0 2.1 1 1 1 2 2 2 2 CRISPR-associated (Cas) DxTHG family Cas_APE2256 PF09651.5 gi|307595268|ref|YP_003901585.1| - 2.5e-33 114.6 0.0 3.5e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF3052 PF11253.3 gi|307595268|ref|YP_003901585.1| - 0.046 13.3 0.0 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) DUF2276 PF10040.4 gi|307595273|ref|YP_003901590.1| - 0.038 14.2 0.0 0.073 13.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2276) RAMPs PF03787.10 gi|307595274|ref|YP_003901591.1| - 1e-08 35.2 0.0 5e-08 33.0 0.0 1.9 1 1 0 1 1 1 1 RAMP superfamily AAA_21 PF13304.1 gi|307595276|ref|YP_003901593.1| - 8e-08 32.5 0.2 0.00012 22.1 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|307595276|ref|YP_003901593.1| - 0.0018 17.4 0.2 0.022 13.8 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.22 gi|307595276|ref|YP_003901593.1| - 0.046 14.0 0.0 0.076 13.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_23 PF13476.1 gi|307595276|ref|YP_003901593.1| - 0.098 12.9 0.1 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Opy2 PF09463.5 gi|307595277|ref|YP_003901594.1| - 4.3 7.5 8.9 1.9 8.6 2.2 2.7 2 0 0 2 2 2 0 Opy2 protein NurA PF09376.5 gi|307595278|ref|YP_003901595.1| - 1.3e-06 28.1 0.3 2.3e-06 27.2 0.2 1.5 1 1 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|307595279|ref|YP_003901596.1| - 8.1e-22 78.0 0.6 1.4e-20 73.9 0.4 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|307595279|ref|YP_003901596.1| - 1.5e-11 44.6 0.0 4.3e-11 43.0 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|307595279|ref|YP_003901596.1| - 5.5e-11 42.3 0.7 3.4e-07 29.9 0.1 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF853 PF05872.7 gi|307595279|ref|YP_003901596.1| - 1.2e-10 40.3 1.6 1.2e-05 23.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|307595279|ref|YP_003901596.1| - 3.2e-07 30.5 0.4 0.00072 19.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|307595279|ref|YP_003901596.1| - 1.3e-06 28.6 0.9 0.036 14.2 0.1 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|307595279|ref|YP_003901596.1| - 2.1e-06 26.6 0.1 1.1e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|307595279|ref|YP_003901596.1| - 1.8e-05 23.8 0.0 2.5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|307595279|ref|YP_003901596.1| - 2.9e-05 23.5 0.6 0.0063 15.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain Pox_A32 PF04665.7 gi|307595279|ref|YP_003901596.1| - 9.3e-05 21.8 0.1 0.00017 21.0 0.0 1.4 1 0 0 1 1 1 1 Poxvirus A32 protein AAA_17 PF13207.1 gi|307595279|ref|YP_003901596.1| - 0.0001 23.0 0.4 0.00026 21.7 0.0 1.9 2 0 0 2 2 1 1 AAA domain DUF2075 PF09848.4 gi|307595279|ref|YP_003901596.1| - 0.00012 21.2 0.2 0.37 9.6 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Zot PF05707.7 gi|307595279|ref|YP_003901596.1| - 0.00016 21.2 0.6 0.0013 18.2 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DEAD PF00270.24 gi|307595279|ref|YP_003901596.1| - 0.00025 20.6 0.1 0.24 10.8 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|307595279|ref|YP_003901596.1| - 0.00028 20.9 0.2 0.0035 17.3 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|307595279|ref|YP_003901596.1| - 0.00034 20.9 0.2 0.0023 18.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|307595279|ref|YP_003901596.1| - 0.00046 19.6 0.2 0.00071 19.0 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ResIII PF04851.10 gi|307595279|ref|YP_003901596.1| - 0.00089 19.1 0.7 0.033 14.0 0.2 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit MobB PF03205.9 gi|307595279|ref|YP_003901596.1| - 0.0014 18.3 1.0 0.003 17.2 0.7 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|307595279|ref|YP_003901596.1| - 0.0019 17.9 1.7 0.0069 16.1 1.2 2.0 1 1 0 1 1 1 1 Part of AAA domain PduV-EutP PF10662.4 gi|307595279|ref|YP_003901596.1| - 0.0019 17.6 0.2 0.0038 16.7 0.1 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|307595279|ref|YP_003901596.1| - 0.0024 17.5 0.4 0.0054 16.4 0.2 1.6 1 0 0 1 1 1 1 NACHT domain ArgK PF03308.11 gi|307595279|ref|YP_003901596.1| - 0.0034 16.2 0.1 0.006 15.3 0.1 1.4 1 0 0 1 1 1 1 ArgK protein Arch_ATPase PF01637.13 gi|307595279|ref|YP_003901596.1| - 0.0054 16.4 0.0 0.083 12.5 0.0 2.5 3 0 0 3 3 3 1 Archaeal ATPase Viral_helicase1 PF01443.13 gi|307595279|ref|YP_003901596.1| - 0.0056 16.2 0.1 0.017 14.6 0.0 1.8 2 0 0 2 2 1 1 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|307595279|ref|YP_003901596.1| - 0.0058 15.7 0.0 0.0097 15.0 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin ABC_tran PF00005.22 gi|307595279|ref|YP_003901596.1| - 0.0064 16.7 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter IPT PF01745.11 gi|307595279|ref|YP_003901596.1| - 0.0074 15.4 0.3 0.19 10.8 0.0 2.4 3 0 0 3 3 2 1 Isopentenyl transferase RuvB_N PF05496.7 gi|307595279|ref|YP_003901596.1| - 0.0087 15.1 0.2 0.017 14.1 0.1 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|307595279|ref|YP_003901596.1| - 0.012 15.4 0.2 0.031 14.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.1 gi|307595279|ref|YP_003901596.1| - 0.014 15.3 0.1 0.032 14.2 0.1 1.7 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|307595279|ref|YP_003901596.1| - 0.014 14.5 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|307595279|ref|YP_003901596.1| - 0.016 14.7 0.1 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arf PF00025.16 gi|307595279|ref|YP_003901596.1| - 0.019 14.2 0.3 0.033 13.4 0.2 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family MMR_HSR1 PF01926.18 gi|307595279|ref|YP_003901596.1| - 0.028 14.3 0.3 0.072 13.0 0.1 1.8 2 0 0 2 2 1 0 50S ribosome-binding GTPase cobW PF02492.14 gi|307595279|ref|YP_003901596.1| - 0.039 13.3 0.5 0.078 12.4 0.3 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UvrD-helicase PF00580.16 gi|307595279|ref|YP_003901596.1| - 0.054 12.7 0.7 0.1 11.8 0.5 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain HTH_Tnp_4 PF13613.1 gi|307595279|ref|YP_003901596.1| - 0.058 12.9 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease G-alpha PF00503.15 gi|307595279|ref|YP_003901596.1| - 0.067 11.8 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit SRPRB PF09439.5 gi|307595279|ref|YP_003901596.1| - 0.09 11.9 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_24 PF13479.1 gi|307595279|ref|YP_003901596.1| - 0.11 12.1 0.3 0.22 11.0 0.1 1.6 2 0 0 2 2 1 0 AAA domain Miro PF08477.8 gi|307595279|ref|YP_003901596.1| - 0.12 12.9 0.1 0.27 11.7 0.1 1.6 1 0 0 1 1 1 0 Miro-like protein DNA_pol3_delta2 PF13177.1 gi|307595279|ref|YP_003901596.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase III, delta subunit RNA_helicase PF00910.17 gi|307595279|ref|YP_003901596.1| - 0.19 11.8 0.0 0.37 10.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|307595279|ref|YP_003901596.1| - 0.27 11.5 0.0 0.39 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Cas_APE2256 PF09651.5 gi|307595280|ref|YP_003901597.1| - 6.5e-18 64.7 0.0 8.4e-18 64.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) RAMPs PF03787.10 gi|307595281|ref|YP_003901598.1| - 0.00015 21.6 0.3 0.0035 17.2 0.2 2.4 1 1 0 1 1 1 1 RAMP superfamily DUF3755 PF12579.3 gi|307595281|ref|YP_003901598.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3755) RAMPs PF03787.10 gi|307595282|ref|YP_003901599.1| - 1.1e-07 31.9 0.1 1e-06 28.7 0.1 2.1 1 1 0 1 1 1 1 RAMP superfamily Cas_Cmr5 PF09701.5 gi|307595283|ref|YP_003901600.1| - 2.3e-05 24.5 0.0 7.9e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.10 gi|307595284|ref|YP_003901601.1| - 1.7e-26 93.4 0.0 2.1e-26 93.1 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily DUF3692 PF12469.3 gi|307595285|ref|YP_003901602.1| - 1.5e-26 92.9 0.0 6e-26 90.9 0.0 2.2 1 1 0 1 1 1 1 CRISPR-associated protein Cas_Cmr3 PF09700.5 gi|307595286|ref|YP_003901603.1| - 5.9e-05 22.6 0.0 0.0019 17.6 0.0 2.4 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) AAA_33 PF13671.1 gi|307595287|ref|YP_003901604.1| - 0.0022 17.8 0.0 0.0025 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|307595287|ref|YP_003901604.1| - 0.012 15.3 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|307595287|ref|YP_003901604.1| - 0.024 14.6 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|307595287|ref|YP_003901604.1| - 0.05 13.7 0.0 0.099 12.8 0.0 1.5 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|307595287|ref|YP_003901604.1| - 0.073 12.6 0.0 0.17 11.4 0.0 1.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|307595287|ref|YP_003901604.1| - 0.076 12.1 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|307595287|ref|YP_003901604.1| - 0.11 11.4 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|307595287|ref|YP_003901604.1| - 0.12 11.1 0.2 0.21 10.3 0.0 1.4 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.1 gi|307595287|ref|YP_003901604.1| - 0.14 11.4 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|307595287|ref|YP_003901604.1| - 0.17 12.1 0.0 0.27 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain PaREP1 PF05942.6 gi|307595291|ref|YP_003901608.1| - 4.2e-25 87.8 0.6 4.8e-25 87.6 0.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SMC_hinge PF06470.8 gi|307595291|ref|YP_003901608.1| - 0.082 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 SMC proteins Flexible Hinge Domain DUF973 PF06157.6 gi|307595292|ref|YP_003901609.1| - 4.9e-08 32.2 24.4 6.4e-08 31.9 16.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF4184 PF13803.1 gi|307595292|ref|YP_003901609.1| - 0.0076 15.5 1.2 0.0076 15.5 0.8 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4184) MIG-14_Wnt-bd PF06664.7 gi|307595292|ref|YP_003901609.1| - 0.64 8.7 6.2 0.92 8.2 4.3 1.2 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion DUF4491 PF14898.1 gi|307595292|ref|YP_003901609.1| - 3.3 7.9 6.6 0.63 10.2 1.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4491) MFS_1 PF07690.11 gi|307595293|ref|YP_003901610.1| - 1.1e-33 116.4 58.5 2.1e-25 89.2 23.7 3.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|307595293|ref|YP_003901610.1| - 5e-07 28.6 12.5 1.5e-06 27.0 1.7 2.3 1 1 1 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.8 gi|307595293|ref|YP_003901610.1| - 0.0024 16.0 17.4 0.0033 15.6 12.1 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|307595293|ref|YP_003901610.1| - 0.0028 16.3 18.1 0.011 14.3 2.0 3.0 1 1 1 3 3 3 2 Sugar (and other) transporter HEV_ORF1 PF02444.11 gi|307595293|ref|YP_003901610.1| - 0.015 15.4 0.1 0.05 13.8 0.1 1.8 1 0 0 1 1 1 0 Hepatitis E virus ORF-2 (Putative capsid protein) DUF1626 PF07788.6 gi|307595294|ref|YP_003901611.1| - 4e-16 58.5 0.7 4e-16 58.5 0.5 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|307595294|ref|YP_003901611.1| - 2.8e-05 23.7 1.2 7.8e-05 22.3 0.5 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF3782) Reo_sigmaC PF04582.7 gi|307595294|ref|YP_003901611.1| - 3.7e-05 23.0 0.3 5.8e-05 22.4 0.2 1.3 1 0 0 1 1 1 1 Reovirus sigma C capsid protein SlyX PF04102.7 gi|307595294|ref|YP_003901611.1| - 0.00066 19.9 0.5 0.028 14.7 0.2 2.3 1 1 1 2 2 2 1 SlyX IncA PF04156.9 gi|307595294|ref|YP_003901611.1| - 0.0016 18.0 0.8 0.0048 16.5 0.6 1.8 1 1 0 1 1 1 1 IncA protein SYCE1 PF15233.1 gi|307595294|ref|YP_003901611.1| - 0.0022 17.9 0.3 0.0038 17.1 0.2 1.4 1 0 0 1 1 1 1 Synaptonemal complex central element protein 1 TMF_DNA_bd PF12329.3 gi|307595294|ref|YP_003901611.1| - 0.0037 17.0 1.2 0.0037 17.0 0.9 2.5 2 1 1 3 3 3 1 TATA element modulatory factor 1 DNA binding Mod_r PF07200.8 gi|307595294|ref|YP_003901611.1| - 0.0087 15.9 0.8 0.013 15.4 0.6 1.3 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein QRPTase_C PF01729.14 gi|307595294|ref|YP_003901611.1| - 0.011 15.3 0.3 0.016 14.7 0.2 1.3 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain AAA_13 PF13166.1 gi|307595294|ref|YP_003901611.1| - 0.011 14.2 0.1 0.012 14.0 0.1 1.0 1 0 0 1 1 1 0 AAA domain Atg14 PF10186.4 gi|307595294|ref|YP_003901611.1| - 0.011 14.6 0.1 0.014 14.3 0.1 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 SNARE PF05739.14 gi|307595294|ref|YP_003901611.1| - 0.013 15.1 2.1 0.94 9.2 0.1 2.6 2 1 1 3 3 3 0 SNARE domain DUF1875 PF08961.5 gi|307595294|ref|YP_003901611.1| - 0.02 14.2 0.4 0.032 13.5 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1875) Baculo_PEP_C PF04513.7 gi|307595294|ref|YP_003901611.1| - 0.022 14.6 0.1 0.04 13.7 0.1 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2779 PF11074.3 gi|307595294|ref|YP_003901611.1| - 0.025 14.6 0.8 0.74 9.8 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function(DUF2779) Tweety PF04906.8 gi|307595294|ref|YP_003901611.1| - 0.039 12.3 0.2 0.054 11.9 0.1 1.1 1 0 0 1 1 1 0 Tweety ATG16 PF08614.6 gi|307595294|ref|YP_003901611.1| - 0.039 13.7 0.6 0.065 13.0 0.4 1.4 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) ADIP PF11559.3 gi|307595294|ref|YP_003901611.1| - 0.042 13.7 0.2 0.067 13.0 0.1 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding MutS_III PF05192.13 gi|307595294|ref|YP_003901611.1| - 0.055 13.2 0.2 0.11 12.3 0.1 1.3 1 1 0 1 1 1 0 MutS domain III DUF16 PF01519.11 gi|307595294|ref|YP_003901611.1| - 0.071 13.3 1.7 0.22 11.7 1.2 1.8 1 1 0 1 1 1 0 Protein of unknown function DUF16 Hemerythrin PF01814.18 gi|307595294|ref|YP_003901611.1| - 0.099 12.8 1.0 0.24 11.5 0.3 2.1 2 1 0 2 2 1 0 Hemerythrin HHE cation binding domain FlaC_arch PF05377.6 gi|307595294|ref|YP_003901611.1| - 0.1 12.4 8.9 5.4 6.9 0.9 4.2 2 1 3 5 5 5 0 Flagella accessory protein C (FlaC) Vps51 PF08700.6 gi|307595294|ref|YP_003901611.1| - 0.12 12.2 0.2 15 5.5 0.0 3.1 2 1 1 3 3 3 0 Vps51/Vps67 DUF972 PF06156.8 gi|307595294|ref|YP_003901611.1| - 0.12 12.7 1.5 0.2 12.0 0.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Fib_alpha PF08702.5 gi|307595294|ref|YP_003901611.1| - 0.12 12.5 0.9 1.3 9.1 0.7 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF948 PF06103.6 gi|307595294|ref|YP_003901611.1| - 0.13 12.1 2.0 0.3 10.9 1.4 1.7 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DivIC PF04977.10 gi|307595294|ref|YP_003901611.1| - 0.14 11.6 0.9 1.6 8.2 0.4 2.6 1 1 1 2 2 2 0 Septum formation initiator COMP PF11598.3 gi|307595294|ref|YP_003901611.1| - 0.2 11.7 2.9 1.3 9.1 0.0 2.7 2 1 1 3 3 2 0 Cartilage oligomeric matrix protein bZIP_1 PF00170.16 gi|307595294|ref|YP_003901611.1| - 0.35 10.8 5.2 0.26 11.2 0.3 2.8 2 1 1 3 3 3 0 bZIP transcription factor DUF1664 PF07889.7 gi|307595294|ref|YP_003901611.1| - 0.58 9.9 3.8 0.72 9.6 1.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) BCL_N PF04714.8 gi|307595294|ref|YP_003901611.1| - 0.61 9.7 2.5 0.56 9.8 0.4 1.9 2 0 0 2 2 2 0 BCL7, N-terminal conserver region Hydantoinase_B PF02538.9 gi|307595295|ref|YP_003901612.1| - 7.3e-168 559.0 0.0 8.1e-168 558.9 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase NTP_transf_2 PF01909.18 gi|307595296|ref|YP_003901613.1| - 1.4e-10 41.3 0.0 1.8e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|307595296|ref|YP_003901613.1| - 0.033 14.2 0.0 0.048 13.7 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm MarR_2 PF12802.2 gi|307595298|ref|YP_003901615.1| - 3.8e-05 23.2 0.0 0.29 10.8 0.0 3.8 2 1 1 3 3 3 1 MarR family TrmB PF01978.14 gi|307595298|ref|YP_003901615.1| - 5.2e-05 22.8 0.6 0.083 12.6 0.0 4.1 4 1 0 4 4 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|307595298|ref|YP_003901615.1| - 0.00013 21.2 0.0 0.0018 17.6 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|307595298|ref|YP_003901615.1| - 0.00034 20.2 0.2 0.011 15.4 0.0 3.2 3 0 0 3 3 3 1 MarR family AAA_16 PF13191.1 gi|307595298|ref|YP_003901615.1| - 0.0013 18.7 0.1 0.32 10.9 0.0 3.3 2 2 1 3 3 3 1 AAA ATPase domain DUF4618 PF15397.1 gi|307595298|ref|YP_003901615.1| - 0.0019 17.5 0.1 0.0048 16.2 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) EF-hand_9 PF14658.1 gi|307595298|ref|YP_003901615.1| - 0.0033 17.3 0.0 0.4 10.6 0.0 3.0 2 0 0 2 2 2 1 EF-hand domain HTH_45 PF14947.1 gi|307595298|ref|YP_003901615.1| - 0.0037 17.0 0.0 0.26 11.1 0.0 3.2 2 0 0 2 2 2 1 Winged helix-turn-helix Baculo_PEP_C PF04513.7 gi|307595298|ref|YP_003901615.1| - 0.0056 16.5 14.1 0.13 12.1 1.6 4.2 2 1 3 5 5 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF815 PF05673.8 gi|307595298|ref|YP_003901615.1| - 0.0065 15.4 1.4 0.015 14.1 0.0 2.2 3 0 0 3 3 3 1 Protein of unknown function (DUF815) DUF2791 PF10923.3 gi|307595298|ref|YP_003901615.1| - 0.0065 15.1 0.0 0.03 12.9 0.0 2.1 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) DUF2250 PF10007.4 gi|307595298|ref|YP_003901615.1| - 0.013 15.3 0.0 0.77 9.6 0.0 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) Apolipoprotein PF01442.13 gi|307595298|ref|YP_003901615.1| - 0.013 14.9 0.3 0.061 12.8 0.0 2.1 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain CorA PF01544.13 gi|307595298|ref|YP_003901615.1| - 0.031 13.3 2.0 0.13 11.2 1.4 2.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Cas_csx3 PF09620.5 gi|307595298|ref|YP_003901615.1| - 0.039 13.7 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_csx3) MCM PF00493.18 gi|307595298|ref|YP_003901615.1| - 0.052 12.3 0.0 1.3 7.7 0.0 2.2 2 0 0 2 2 2 0 MCM2/3/5 family AAA_29 PF13555.1 gi|307595298|ref|YP_003901615.1| - 0.074 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF1664 PF07889.7 gi|307595298|ref|YP_003901615.1| - 0.12 12.1 0.9 20 4.9 0.0 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|307595298|ref|YP_003901615.1| - 0.13 10.6 3.2 0.081 11.3 0.7 1.6 2 0 0 2 2 2 0 AAA domain WEMBL PF05701.6 gi|307595298|ref|YP_003901615.1| - 0.45 8.9 1.3 0.84 8.0 0.9 1.3 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Med4 PF10018.4 gi|307595298|ref|YP_003901615.1| - 0.84 9.0 2.8 3.4 7.0 2.0 2.0 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 NPV_P10 PF05531.7 gi|307595298|ref|YP_003901615.1| - 6.2 7.1 9.7 11 6.3 2.5 3.9 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein NurA PF09376.5 gi|307595300|ref|YP_003901617.1| - 2e-06 27.4 1.8 0.00042 19.8 1.2 2.3 1 1 0 1 1 1 1 NurA domain DUF1122 PF06557.6 gi|307595300|ref|YP_003901617.1| - 0.038 13.1 0.0 0.06 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1122) DUF99 PF01949.11 gi|307595303|ref|YP_003901620.1| - 2.3e-55 186.6 0.0 2.7e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DHDPS PF00701.17 gi|307595307|ref|YP_003901624.1| - 3e-49 167.1 0.0 3.3e-49 167.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CoatB PF10389.4 gi|307595307|ref|YP_003901624.1| - 0.1 12.4 0.3 0.27 11.1 0.2 1.6 1 0 0 1 1 1 0 Bacteriophage coat protein B HTH_21 PF13276.1 gi|307595307|ref|YP_003901624.1| - 0.12 12.3 0.1 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 HTH-like domain SMC_N PF02463.14 gi|307595308|ref|YP_003901625.1| - 8.5e-17 61.1 0.0 4.5e-10 39.1 0.0 2.5 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|307595308|ref|YP_003901625.1| - 9.3e-16 58.7 53.1 2.8e-06 27.7 36.8 4.4 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|307595308|ref|YP_003901625.1| - 4.4e-13 48.6 38.1 4.1e-07 28.8 4.7 4.4 3 1 1 4 4 4 2 AAA domain AAA_15 PF13175.1 gi|307595308|ref|YP_003901625.1| - 2.6e-08 33.3 27.1 2.4e-05 23.5 0.0 3.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_21 PF13304.1 gi|307595308|ref|YP_003901625.1| - 1.2e-06 28.7 23.5 5.9e-05 23.1 6.1 4.0 1 1 2 3 3 2 2 AAA domain AAA_29 PF13555.1 gi|307595308|ref|YP_003901625.1| - 0.00017 21.0 0.0 0.00031 20.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MCPsignal PF00015.16 gi|307595308|ref|YP_003901625.1| - 0.00051 19.6 9.4 0.12 11.8 0.7 3.8 2 1 0 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain BCDHK_Adom3 PF10436.4 gi|307595308|ref|YP_003901625.1| - 0.00076 19.0 0.5 1.3 8.4 0.4 3.7 2 1 0 2 2 2 1 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase MscS_porin PF12795.2 gi|307595308|ref|YP_003901625.1| - 0.0011 18.3 5.1 0.0011 18.3 3.5 4.6 2 2 1 4 4 4 2 Mechanosensitive ion channel porin domain Reo_sigmaC PF04582.7 gi|307595308|ref|YP_003901625.1| - 0.0014 17.9 11.4 0.015 14.4 0.3 3.6 2 2 0 3 3 3 1 Reovirus sigma C capsid protein Fib_alpha PF08702.5 gi|307595308|ref|YP_003901625.1| - 0.0018 18.4 0.9 0.0018 18.4 0.6 6.0 3 2 4 7 7 6 2 Fibrinogen alpha/beta chain family NADH-G_4Fe-4S_3 PF10588.4 gi|307595308|ref|YP_003901625.1| - 0.0019 17.3 0.3 0.0048 16.0 0.2 1.6 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Rad50_zn_hook PF04423.9 gi|307595308|ref|YP_003901625.1| - 0.005 16.2 4.8 0.005 16.2 3.4 6.1 5 2 1 7 7 6 1 Rad50 zinc hook motif Baculo_PEP_C PF04513.7 gi|307595308|ref|YP_003901625.1| - 0.0057 16.4 19.3 1.4 8.7 0.2 5.9 3 1 2 6 6 5 1 Baculovirus polyhedron envelope protein, PEP, C terminus IncA PF04156.9 gi|307595308|ref|YP_003901625.1| - 0.0095 15.5 59.7 0.019 14.5 0.1 5.2 1 1 0 2 2 1 1 IncA protein Mod_r PF07200.8 gi|307595308|ref|YP_003901625.1| - 0.012 15.5 38.5 0.084 12.7 3.0 5.4 2 2 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein Uteroglobin PF01099.12 gi|307595308|ref|YP_003901625.1| - 0.016 15.0 0.6 5.3 6.9 0.0 3.7 3 0 0 3 3 3 0 Uteroglobin family AAA_19 PF13245.1 gi|307595308|ref|YP_003901625.1| - 0.021 14.5 0.0 0.071 12.8 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NPV_P10 PF05531.7 gi|307595308|ref|YP_003901625.1| - 0.022 15.0 25.0 3 8.1 0.5 7.7 5 2 2 7 7 7 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.4 gi|307595308|ref|YP_003901625.1| - 0.023 14.8 41.7 0.044 13.9 1.7 7.3 3 2 5 8 8 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Mut7-C PF01927.11 gi|307595308|ref|YP_003901625.1| - 0.025 14.5 3.6 0.34 10.8 2.2 2.9 1 1 0 1 1 1 0 Mut7-C RNAse domain Stanniocalcin PF03298.8 gi|307595308|ref|YP_003901625.1| - 0.032 13.2 1.0 5 6.0 0.2 3.0 3 0 0 3 3 3 0 Stanniocalcin family Bacillus_HBL PF05791.6 gi|307595308|ref|YP_003901625.1| - 0.033 13.5 17.7 0.29 10.5 0.5 4.5 3 1 1 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) AAA_22 PF13401.1 gi|307595308|ref|YP_003901625.1| - 0.046 13.8 0.2 0.046 13.8 0.2 4.9 2 2 2 4 4 4 0 AAA domain GAS PF13851.1 gi|307595308|ref|YP_003901625.1| - 0.047 12.8 48.4 0.27 10.3 7.2 4.7 2 2 3 5 5 5 0 Growth-arrest specific micro-tubule binding DUF948 PF06103.6 gi|307595308|ref|YP_003901625.1| - 0.06 13.2 10.5 3.4 7.5 0.1 5.2 3 2 1 5 5 5 0 Bacterial protein of unknown function (DUF948) STAT_alpha PF01017.15 gi|307595308|ref|YP_003901625.1| - 0.089 12.5 26.7 0.18 11.5 0.7 5.0 3 2 2 5 5 5 0 STAT protein, all-alpha domain Syntaxin_2 PF14523.1 gi|307595308|ref|YP_003901625.1| - 0.093 12.7 27.8 5.6 7.0 3.3 6.7 2 2 3 5 5 5 0 Syntaxin-like protein Rop-like PF05082.8 gi|307595308|ref|YP_003901625.1| - 0.099 12.1 5.1 0.56 9.7 0.1 4.2 3 0 0 3 3 3 0 Rop-like FUSC PF04632.7 gi|307595308|ref|YP_003901625.1| - 0.29 9.5 5.5 1.9 6.8 0.6 2.9 3 0 0 3 3 3 0 Fusaric acid resistance protein family ABC_tran PF00005.22 gi|307595308|ref|YP_003901625.1| - 0.4 10.9 11.1 3.5 7.9 0.0 4.9 2 1 0 2 2 1 0 ABC transporter AAA PF00004.24 gi|307595308|ref|YP_003901625.1| - 0.58 10.3 4.4 0.7 10.0 0.0 3.5 4 1 1 5 5 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|307595308|ref|YP_003901625.1| - 0.61 10.9 0.0 0.61 10.9 0.0 5.0 2 1 0 2 2 1 0 AAA domain V_ATPase_I PF01496.14 gi|307595308|ref|YP_003901625.1| - 0.67 7.7 39.5 0.3 8.8 14.6 3.0 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family Peptidase_C6 PF00851.13 gi|307595308|ref|YP_003901625.1| - 0.94 8.0 5.9 0.082 11.5 0.2 2.1 2 1 0 2 2 2 0 Helper component proteinase Syntaxin-6_N PF09177.6 gi|307595308|ref|YP_003901625.1| - 0.96 9.8 30.4 2.2 8.7 3.9 6.0 3 3 3 6 6 5 0 Syntaxin 6, N-terminal YlbD_coat PF14071.1 gi|307595308|ref|YP_003901625.1| - 1.1 9.3 4.9 31 4.6 0.1 3.9 2 2 1 3 3 3 0 Putative coat protein DUF1664 PF07889.7 gi|307595308|ref|YP_003901625.1| - 1.2 8.9 26.1 1.2 8.9 0.3 6.2 2 2 3 6 6 6 0 Protein of unknown function (DUF1664) APG6 PF04111.7 gi|307595308|ref|YP_003901625.1| - 1.5 7.7 46.0 0.46 9.4 2.1 4.3 1 1 3 4 4 4 0 Autophagy protein Apg6 Vps39_2 PF10367.4 gi|307595308|ref|YP_003901625.1| - 2.1 8.5 4.9 9.9 6.3 0.2 3.5 3 1 1 4 4 2 0 Vacuolar sorting protein 39 domain 2 DUF2203 PF09969.4 gi|307595308|ref|YP_003901625.1| - 2.2 8.5 23.5 5.7 7.1 0.4 5.4 3 2 1 5 5 4 0 Uncharacterized conserved protein (DUF2203) COG2 PF06148.6 gi|307595308|ref|YP_003901625.1| - 3.2 7.6 40.4 3.5 7.5 0.0 7.8 4 3 4 8 8 8 0 COG (conserved oligomeric Golgi) complex component, COG2 LAGLIDADG_3 PF14528.1 gi|307595308|ref|YP_003901625.1| - 3.7 7.8 8.6 10 6.4 0.7 4.3 4 0 0 4 4 4 0 LAGLIDADG-like domain Phage_GPO PF05929.6 gi|307595308|ref|YP_003901625.1| - 8.3 5.5 17.5 0.16 11.2 1.3 3.8 2 1 1 4 4 4 0 Phage capsid scaffolding protein (GPO) serine peptidase FlxA PF14282.1 gi|307595308|ref|YP_003901625.1| - 9.8 6.1 21.7 7.5 6.5 2.6 5.4 5 2 1 6 6 6 0 FlxA-like protein Baculo_PEP_C PF04513.7 gi|307595310|ref|YP_003901627.1| - 0.00072 19.3 1.7 0.0011 18.7 1.2 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus EzrA PF06160.7 gi|307595310|ref|YP_003901627.1| - 0.0015 16.7 0.5 0.0021 16.3 0.3 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA HSBP1 PF06825.7 gi|307595310|ref|YP_003901627.1| - 0.0066 16.0 0.2 0.0066 16.0 0.1 2.5 3 0 0 3 3 3 1 Heat shock factor binding protein 1 DUF3567 PF12091.3 gi|307595310|ref|YP_003901627.1| - 0.015 15.2 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) Snapin_Pallidin PF14712.1 gi|307595310|ref|YP_003901627.1| - 0.024 14.9 2.3 0.06 13.6 1.6 1.6 1 1 0 1 1 1 0 Snapin/Pallidin CorA PF01544.13 gi|307595310|ref|YP_003901627.1| - 0.031 13.3 0.6 0.051 12.6 0.4 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Phasin PF05597.6 gi|307595310|ref|YP_003901627.1| - 0.032 13.9 0.3 0.052 13.2 0.2 1.4 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) KdpD PF02702.12 gi|307595310|ref|YP_003901627.1| - 0.049 12.7 0.2 0.096 11.8 0.1 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain Syntaxin-6_N PF09177.6 gi|307595310|ref|YP_003901627.1| - 0.056 13.8 1.4 0.12 12.7 0.3 2.1 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Prefoldin PF02996.12 gi|307595310|ref|YP_003901627.1| - 0.056 13.0 0.7 4.8 6.8 0.7 2.7 2 1 0 2 2 2 0 Prefoldin subunit AAA_13 PF13166.1 gi|307595310|ref|YP_003901627.1| - 0.057 11.8 0.1 0.074 11.5 0.1 1.1 1 0 0 1 1 1 0 AAA domain Fmp27_WPPW PF10359.4 gi|307595310|ref|YP_003901627.1| - 0.059 11.7 0.1 0.077 11.4 0.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain FlaC_arch PF05377.6 gi|307595310|ref|YP_003901627.1| - 0.066 13.1 2.0 0.15 11.9 1.1 1.9 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.4 gi|307595310|ref|YP_003901627.1| - 0.069 13.2 2.9 0.49 10.5 0.3 2.2 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4164 PF13747.1 gi|307595310|ref|YP_003901627.1| - 0.071 13.2 1.1 0.15 12.2 0.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) NPV_P10 PF05531.7 gi|307595310|ref|YP_003901627.1| - 0.078 13.2 3.8 0.19 11.9 2.6 1.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein MtrB PF05440.7 gi|307595310|ref|YP_003901627.1| - 0.11 12.5 1.1 6.9 6.7 0.0 2.4 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Reo_sigmaC PF04582.7 gi|307595310|ref|YP_003901627.1| - 0.11 11.5 0.1 0.15 11.1 0.1 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Vps53_N PF04100.7 gi|307595310|ref|YP_003901627.1| - 0.19 10.4 1.3 0.26 10.0 0.9 1.1 1 0 0 1 1 1 0 Vps53-like, N-terminal YvrJ PF12841.2 gi|307595310|ref|YP_003901627.1| - 0.31 10.3 6.2 6.4 6.1 0.1 3.5 3 0 0 3 3 3 0 YvrJ protein family XhlA PF10779.4 gi|307595310|ref|YP_003901627.1| - 3.7 7.5 6.1 9.9 6.1 0.9 2.4 1 1 1 2 2 2 0 Haemolysin XhlA Actin PF00022.14 gi|307595311|ref|YP_003901628.1| - 3.2e-10 39.0 0.0 9.2e-10 37.4 0.0 1.6 1 1 0 1 1 1 1 Actin RasGAP PF00616.14 gi|307595312|ref|YP_003901629.1| - 0.017 14.7 0.0 0.026 14.1 0.0 1.3 1 1 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase DUF777 PF05606.6 gi|307595312|ref|YP_003901629.1| - 0.054 12.6 0.2 0.058 12.5 0.1 1.3 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF777) PBP_GOBP PF01395.17 gi|307595312|ref|YP_003901629.1| - 0.058 13.0 0.2 0.068 12.7 0.2 1.2 1 0 0 1 1 1 0 PBP/GOBP family Docking PF08990.6 gi|307595312|ref|YP_003901629.1| - 0.56 9.5 2.0 0.96 8.7 1.4 1.3 1 0 0 1 1 1 0 Erythronolide synthase docking Cyclophil_like PF04126.8 gi|307595313|ref|YP_003901630.1| - 1.6e-05 24.4 0.0 2.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Cyclophilin-like Pro_isomerase PF00160.16 gi|307595313|ref|YP_003901630.1| - 0.13 12.4 0.0 5.6 7.1 0.0 2.1 2 0 0 2 2 2 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alba PF01918.16 gi|307595314|ref|YP_003901631.1| - 2.1e-11 43.2 0.3 2.9e-11 42.8 0.2 1.2 1 0 0 1 1 1 1 Alba ATP_bind_1 PF03029.12 gi|307595315|ref|YP_003901632.1| - 2.3e-13 50.2 0.1 1.5e-09 37.7 0.1 2.3 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein Arf PF00025.16 gi|307595315|ref|YP_003901632.1| - 5e-12 45.3 0.0 1.4e-11 43.9 0.0 1.6 1 1 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|307595315|ref|YP_003901632.1| - 1.1e-11 45.2 0.0 1.5e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|307595315|ref|YP_003901632.1| - 1.3e-07 31.0 0.0 2e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|307595315|ref|YP_003901632.1| - 9e-06 25.2 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_24 PF13479.1 gi|307595315|ref|YP_003901632.1| - 1.6e-05 24.5 0.3 3.1e-05 23.6 0.2 1.5 1 1 0 1 1 1 1 AAA domain Ras PF00071.17 gi|307595315|ref|YP_003901632.1| - 3.1e-05 23.4 0.0 7.9e-05 22.0 0.0 1.5 1 1 0 1 1 1 1 Ras family UPF0079 PF02367.12 gi|307595315|ref|YP_003901632.1| - 0.00073 19.1 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|307595315|ref|YP_003901632.1| - 0.0017 17.6 0.0 0.0026 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|307595315|ref|YP_003901632.1| - 0.0017 19.1 0.1 0.0023 18.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|307595315|ref|YP_003901632.1| - 0.0018 18.0 0.2 0.029 14.0 0.1 2.3 2 1 0 2 2 2 1 NTPase AAA_28 PF13521.1 gi|307595315|ref|YP_003901632.1| - 0.0019 18.1 0.0 0.0056 16.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|307595315|ref|YP_003901632.1| - 0.0024 17.8 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase Septin PF00735.13 gi|307595315|ref|YP_003901632.1| - 0.0026 16.8 0.5 0.0044 16.0 0.0 1.5 2 0 0 2 2 2 1 Septin AAA_18 PF13238.1 gi|307595315|ref|YP_003901632.1| - 0.003 17.8 0.0 0.0039 17.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|307595315|ref|YP_003901632.1| - 0.0038 16.9 0.0 0.053 13.1 0.0 2.1 1 1 0 1 1 1 1 NACHT domain ABC_tran PF00005.22 gi|307595315|ref|YP_003901632.1| - 0.012 15.8 0.0 0.016 15.5 0.0 1.3 1 1 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|307595315|ref|YP_003901632.1| - 0.013 14.9 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.13 gi|307595315|ref|YP_003901632.1| - 0.015 14.8 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|307595315|ref|YP_003901632.1| - 0.035 13.9 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|307595315|ref|YP_003901632.1| - 0.037 12.9 0.1 0.053 12.4 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|307595315|ref|YP_003901632.1| - 0.04 13.6 0.1 0.099 12.4 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain cobW PF02492.14 gi|307595315|ref|YP_003901632.1| - 0.056 12.8 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|307595315|ref|YP_003901632.1| - 0.057 12.5 0.0 0.26 10.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|307595315|ref|YP_003901632.1| - 0.058 13.5 0.0 0.088 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.7 gi|307595315|ref|YP_003901632.1| - 0.066 12.3 0.0 0.13 11.4 0.0 1.4 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region Zeta_toxin PF06414.7 gi|307595315|ref|YP_003901632.1| - 0.11 11.5 0.0 0.27 10.2 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin NOG1 PF06858.9 gi|307595315|ref|YP_003901632.1| - 0.12 12.2 0.1 0.29 11.0 0.0 1.6 2 0 0 2 2 1 0 Nucleolar GTP-binding protein 1 (NOG1) AAA_30 PF13604.1 gi|307595315|ref|YP_003901632.1| - 0.14 11.7 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Robl_LC7 PF03259.12 gi|307595316|ref|YP_003901633.1| - 0.0088 15.5 0.1 0.02 14.4 0.0 1.6 1 1 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|307595316|ref|YP_003901633.1| - 0.017 14.7 0.6 0.027 14.1 0.4 1.4 1 1 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting Molydop_binding PF01568.16 gi|307595317|ref|YP_003901634.1| - 0.041 13.6 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain RNA_pol_Rpb6 PF01192.17 gi|307595318|ref|YP_003901635.1| - 4.1e-17 61.6 0.1 6.7e-17 60.9 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb6 Pox_RNA_Pol_19 PF05320.7 gi|307595318|ref|YP_003901635.1| - 0.0012 18.6 0.0 0.0013 18.5 0.0 1.1 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase 19 kDa subunit Cpn60_TCP1 PF00118.19 gi|307595319|ref|YP_003901636.1| - 2.9e-166 553.8 6.2 3.3e-166 553.7 4.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3942 PF13078.1 gi|307595319|ref|YP_003901636.1| - 0.028 14.4 0.2 0.19 11.8 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3942) Peptidase_S24 PF00717.18 gi|307595320|ref|YP_003901637.1| - 0.00011 21.8 0.0 0.00019 21.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like Acetyltransf_1 PF00583.19 gi|307595321|ref|YP_003901638.1| - 3.2e-14 52.7 0.2 4.7e-14 52.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|307595321|ref|YP_003901638.1| - 5.1e-06 26.5 0.1 9.5e-06 25.6 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|307595321|ref|YP_003901638.1| - 8.7e-06 25.4 0.0 1.4e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|307595321|ref|YP_003901638.1| - 9.7e-06 25.6 0.0 1.3e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|307595321|ref|YP_003901638.1| - 2.7e-05 24.0 0.1 3.6e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|307595321|ref|YP_003901638.1| - 5.2e-05 23.1 0.1 8.1e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|307595321|ref|YP_003901638.1| - 0.0011 18.9 0.2 0.0016 18.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|307595321|ref|YP_003901638.1| - 0.0097 16.0 0.1 0.014 15.5 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Complex1_51K PF01512.12 gi|307595321|ref|YP_003901638.1| - 0.027 14.2 0.1 0.045 13.4 0.1 1.3 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase 51 Kd subunit PhosphMutase PF10143.4 gi|307595322|ref|YP_003901639.1| - 3.2e-53 179.8 0.0 4.7e-53 179.3 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|307595322|ref|YP_003901639.1| - 3.6e-45 154.3 0.0 4.2e-45 154.1 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|307595322|ref|YP_003901639.1| - 0.00041 19.7 0.4 0.00093 18.6 0.1 1.6 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.15 gi|307595322|ref|YP_003901639.1| - 0.16 10.5 0.1 3.7 6.1 0.0 2.0 1 1 1 2 2 2 0 Alkaline phosphatase CutA1 PF03091.10 gi|307595323|ref|YP_003901640.1| - 1.9e-36 123.7 0.0 2.1e-36 123.6 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Aldo_ket_red PF00248.16 gi|307595324|ref|YP_003901641.1| - 1.7e-73 246.9 0.0 1.9e-73 246.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family TMP-TENI PF02581.12 gi|307595325|ref|YP_003901642.1| - 7e-57 191.4 0.1 8e-57 191.2 0.1 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|307595325|ref|YP_003901642.1| - 0.002 17.2 0.2 0.0048 15.9 0.1 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|307595325|ref|YP_003901642.1| - 0.0051 16.0 0.5 0.011 14.9 0.3 1.5 1 1 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.7 gi|307595325|ref|YP_003901642.1| - 0.02 13.8 0.0 0.24 10.2 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF561) DeoC PF01791.4 gi|307595325|ref|YP_003901642.1| - 0.046 13.0 2.0 0.25 10.5 0.0 2.5 3 0 0 3 3 3 0 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|307595325|ref|YP_003901642.1| - 0.061 12.5 1.4 0.18 11.0 0.1 2.3 2 1 0 2 2 2 0 Histidine biosynthesis protein MS_channel PF00924.13 gi|307595326|ref|YP_003901643.1| - 4e-19 68.7 5.4 4e-19 68.7 3.7 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel Sec62 PF03839.11 gi|307595326|ref|YP_003901643.1| - 0.2 11.0 1.6 0.39 10.0 1.1 1.4 1 0 0 1 1 1 0 Translocation protein Sec62 Zip PF02535.17 gi|307595326|ref|YP_003901643.1| - 0.64 8.9 9.5 0.055 12.4 1.0 2.0 1 1 1 2 2 2 0 ZIP Zinc transporter FtsX PF02687.16 gi|307595326|ref|YP_003901643.1| - 1.2 8.8 21.2 0.67 9.7 1.6 3.1 1 1 2 3 3 3 0 FtsX-like permease family DUF3112 PF11309.3 gi|307595326|ref|YP_003901643.1| - 2 8.1 7.9 1.5 8.5 4.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3112) Gly-zipper_OmpA PF13436.1 gi|307595326|ref|YP_003901643.1| - 2.3 7.9 9.2 3.5 7.2 6.4 1.3 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF4117 PF13491.1 gi|307595326|ref|YP_003901643.1| - 2.5 7.5 17.5 0.17 11.2 8.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4117) MMR_HSR1_C PF08438.5 gi|307595327|ref|YP_003901644.1| - 1.4e-36 124.9 0.0 2.3e-36 124.3 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|307595327|ref|YP_003901644.1| - 1.1e-17 64.0 0.0 4.6e-17 62.0 0.0 2.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|307595327|ref|YP_003901644.1| - 1.5e-07 30.8 0.1 3.7e-05 23.0 0.0 2.6 2 0 0 2 2 2 2 Ferrous iron transport protein B TGS PF02824.16 gi|307595327|ref|YP_003901644.1| - 1.1e-06 28.4 0.1 2.1e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 TGS domain GTP_EFTU PF00009.22 gi|307595327|ref|YP_003901644.1| - 0.00049 19.5 0.1 0.095 12.1 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain tRNA-synt_1d PF00750.14 gi|307595328|ref|YP_003901645.1| - 1.9e-49 168.4 0.0 6.7e-31 107.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|307595328|ref|YP_003901645.1| - 2.4e-25 88.8 0.2 1.3e-24 86.3 0.0 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain Seryl_tRNA_N PF02403.17 gi|307595328|ref|YP_003901645.1| - 0.021 14.8 0.1 0.052 13.5 0.1 1.7 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain tRNA-synt_1e PF01406.14 gi|307595328|ref|YP_003901645.1| - 0.024 13.7 0.2 0.2 10.7 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|307595328|ref|YP_003901645.1| - 0.035 12.7 0.0 0.66 8.5 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (K) RNA_pol_Rpb5_C PF01191.14 gi|307595329|ref|YP_003901646.1| - 2.8e-27 94.0 0.0 3.3e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF4295 PF14128.1 gi|307595329|ref|YP_003901646.1| - 0.15 11.6 0.2 2.2 7.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4295) RNA_pol_Rpb2_6 PF00562.23 gi|307595330|ref|YP_003901647.1| - 1.6e-129 432.0 0.0 2.2e-129 431.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|307595330|ref|YP_003901647.1| - 1.9e-62 209.8 0.0 2.7e-62 209.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|307595330|ref|YP_003901647.1| - 7.4e-33 113.5 0.0 1.6e-32 112.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|307595330|ref|YP_003901647.1| - 9.5e-28 95.7 0.1 2.2e-27 94.5 0.1 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.15 gi|307595330|ref|YP_003901647.1| - 1.3e-27 95.9 0.0 2.5e-27 94.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|307595330|ref|YP_003901647.1| - 2.1e-20 72.2 8.1 3.3e-20 71.6 2.6 3.1 3 0 0 3 3 3 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|307595330|ref|YP_003901647.1| - 3.6e-10 39.6 0.4 8.3e-10 38.4 0.3 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.7 gi|307595331|ref|YP_003901648.1| - 2.4e-88 296.6 0.0 4.7e-88 295.6 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|307595331|ref|YP_003901648.1| - 1.2e-68 230.2 0.0 2.5e-68 229.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|307595331|ref|YP_003901648.1| - 2e-34 118.6 0.0 3.9e-34 117.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|307595331|ref|YP_003901648.1| - 9.9e-30 103.7 0.1 1.9e-29 102.8 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|307595331|ref|YP_003901648.1| - 7.4e-27 93.2 0.0 1.5e-26 92.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 CpXC PF14353.1 gi|307595331|ref|YP_003901648.1| - 0.042 13.8 0.1 0.29 11.0 0.0 2.3 2 0 0 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.1 gi|307595331|ref|YP_003901648.1| - 0.27 10.4 4.6 0.23 10.7 0.1 2.7 2 1 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|307595331|ref|YP_003901648.1| - 1.2 9.1 6.4 7.9 6.5 0.0 3.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) GFA PF04828.9 gi|307595331|ref|YP_003901648.1| - 2 8.4 4.5 3.5 7.6 0.0 2.6 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.1 gi|307595331|ref|YP_003901648.1| - 5.8 6.7 10.3 1.2 8.8 0.1 3.1 3 0 0 3 3 3 0 Nudix N-terminal RNA_pol_Rpb1_5 PF04998.12 gi|307595332|ref|YP_003901649.1| - 8.9e-49 166.2 1.1 2.5e-48 164.7 0.7 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HMA PF00403.21 gi|307595332|ref|YP_003901649.1| - 1.7 8.8 8.2 2.5 8.2 0.9 3.1 2 1 1 3 3 3 0 Heavy-metal-associated domain Ribosomal_L7Ae PF01248.21 gi|307595333|ref|YP_003901650.1| - 3.6e-19 68.0 0.0 4e-19 67.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Glyco_hydr_30_2 PF14587.1 gi|307595333|ref|YP_003901650.1| - 0.085 11.7 0.0 0.094 11.6 0.0 1.0 1 0 0 1 1 1 0 O-Glycosyl hydrolase family 30 KH_2 PF07650.12 gi|307595334|ref|YP_003901651.1| - 8.2e-17 60.5 4.2 7.6e-11 41.4 0.3 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|307595334|ref|YP_003901651.1| - 5.7e-12 45.2 2.4 1.1e-11 44.3 0.2 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|307595334|ref|YP_003901651.1| - 3e-06 26.7 2.1 0.0019 17.7 0.2 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|307595334|ref|YP_003901651.1| - 0.00016 21.2 0.4 0.0015 18.1 0.1 2.1 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|307595334|ref|YP_003901651.1| - 0.013 15.1 1.2 2.7 7.7 0.0 2.7 2 0 0 2 2 2 0 KH domain Ribosom_S12_S23 PF00164.20 gi|307595335|ref|YP_003901652.1| - 7.9e-35 118.9 0.2 9e-35 118.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Macro PF01661.16 gi|307595337|ref|YP_003901654.1| - 4.1e-37 126.6 0.0 5.7e-37 126.2 0.0 1.2 1 0 0 1 1 1 1 Macro domain Arch_ATPase PF01637.13 gi|307595338|ref|YP_003901655.1| - 1.2e-34 120.0 0.0 1.8e-34 119.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|307595338|ref|YP_003901655.1| - 8.8e-09 35.3 0.0 0.00036 20.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|307595338|ref|YP_003901655.1| - 2.2e-08 34.3 0.3 7.1e-08 32.6 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|307595338|ref|YP_003901655.1| - 1e-06 28.8 0.0 3.5e-06 27.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain TPR_2 PF07719.12 gi|307595338|ref|YP_003901655.1| - 0.0043 16.8 0.1 3.2 7.8 0.0 3.2 2 0 0 2 2 2 2 Tetratricopeptide repeat DUF815 PF05673.8 gi|307595338|ref|YP_003901655.1| - 0.13 11.1 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_10 PF12846.2 gi|307595338|ref|YP_003901655.1| - 0.17 11.3 0.2 12 5.1 0.0 2.6 2 1 0 3 3 3 0 AAA-like domain MFS_1 PF07690.11 gi|307595340|ref|YP_003901657.1| - 1.3e-31 109.6 60.9 6.2e-18 64.6 25.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|307595340|ref|YP_003901657.1| - 1.3e-05 24.9 5.0 0.00027 20.6 0.3 4.1 4 1 1 5 5 5 2 MFS_1 like family DUF4337 PF14235.1 gi|307595340|ref|YP_003901657.1| - 4.6 7.0 13.2 0.032 14.0 1.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DrsE PF02635.10 gi|307595341|ref|YP_003901658.1| - 3.2e-11 43.3 0.0 3.9e-11 43.0 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family RHS_repeat PF05593.9 gi|307595342|ref|YP_003901659.1| - 0.056 13.6 0.1 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 RHS Repeat SPOUT_MTase_2 PF14419.1 gi|307595342|ref|YP_003901659.1| - 0.083 12.0 0.1 0.083 12.0 0.0 1.0 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP Snapin_Pallidin PF14712.1 gi|307595343|ref|YP_003901660.1| - 0.04 14.2 0.1 0.04 14.2 0.1 3.4 3 1 1 4 4 4 0 Snapin/Pallidin NEP PF10167.4 gi|307595343|ref|YP_003901660.1| - 0.07 12.8 5.9 0.21 11.3 0.3 2.9 2 0 0 2 2 2 0 Uncharacterised conserved protein CENP-X PF09415.5 gi|307595343|ref|YP_003901660.1| - 0.63 9.9 3.1 2.3 8.1 0.3 2.7 2 0 0 2 2 2 0 CENP-S associating Centromere protein X Syntaxin-18_N PF10496.4 gi|307595343|ref|YP_003901660.1| - 0.63 9.9 3.4 0.38 10.6 0.5 2.0 2 0 0 2 2 2 0 SNARE-complex protein Syntaxin-18 N-terminus DUF4208 PF13907.1 gi|307595343|ref|YP_003901660.1| - 1.3 9.3 8.1 3.5 7.9 0.5 3.5 4 0 0 4 4 4 0 Domain of unknown function (DUF4208) PfkB PF00294.19 gi|307595344|ref|YP_003901661.1| - 8.4e-36 123.6 0.0 1e-35 123.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Sugar_tr PF00083.19 gi|307595345|ref|YP_003901662.1| - 1.2e-13 50.4 25.2 2.3e-13 49.5 7.7 2.8 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|307595345|ref|YP_003901662.1| - 5.9e-12 44.9 50.7 1.6e-05 23.7 17.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1077 PF06417.7 gi|307595345|ref|YP_003901662.1| - 0.21 10.9 1.9 0.54 9.6 1.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1077) Tropomyosin PF00261.15 gi|307595346|ref|YP_003901663.1| - 7.9e-05 21.8 0.1 0.00016 20.8 0.1 1.5 1 0 0 1 1 1 1 Tropomyosin EzrA PF06160.7 gi|307595346|ref|YP_003901663.1| - 0.00012 20.4 0.1 0.00017 19.9 0.1 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA RmuC PF02646.11 gi|307595346|ref|YP_003901663.1| - 0.00061 18.7 0.0 0.00085 18.2 0.0 1.3 1 0 0 1 1 1 1 RmuC family TipAS PF07739.8 gi|307595346|ref|YP_003901663.1| - 0.00083 19.6 0.3 0.57 10.5 0.0 2.3 2 0 0 2 2 2 1 TipAS antibiotic-recognition domain DHC_N2 PF08393.8 gi|307595346|ref|YP_003901663.1| - 0.0023 16.5 0.8 0.0037 15.8 0.6 1.2 1 0 0 1 1 1 1 Dynein heavy chain, N-terminal region 2 DUF1978 PF09321.5 gi|307595346|ref|YP_003901663.1| - 0.0023 17.4 1.2 0.0047 16.4 0.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1978) Baculo_PEP_C PF04513.7 gi|307595346|ref|YP_003901663.1| - 0.0057 16.4 0.0 0.021 14.6 0.0 2.0 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4456 PF14644.1 gi|307595346|ref|YP_003901663.1| - 0.0063 15.7 0.0 0.014 14.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4456) DUF3552 PF12072.3 gi|307595346|ref|YP_003901663.1| - 0.014 14.6 0.7 0.014 14.6 0.5 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) DUF1664 PF07889.7 gi|307595346|ref|YP_003901663.1| - 0.02 14.6 0.1 0.27 11.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Hemagglutinin PF00509.13 gi|307595346|ref|YP_003901663.1| - 0.025 12.7 1.7 0.04 12.0 0.9 1.5 1 1 0 1 1 1 0 Haemagglutinin RPW8 PF05659.6 gi|307595346|ref|YP_003901663.1| - 0.033 13.7 0.3 0.13 11.7 0.1 2.0 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF342 PF03961.8 gi|307595346|ref|YP_003901663.1| - 0.035 12.5 0.1 0.055 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) BAR PF03114.13 gi|307595346|ref|YP_003901663.1| - 0.042 13.3 1.0 0.098 12.1 0.7 1.7 1 0 0 1 1 1 0 BAR domain Phage_Mu_Gam PF07352.7 gi|307595346|ref|YP_003901663.1| - 0.049 13.1 1.1 0.09 12.2 0.8 1.4 1 0 0 1 1 1 0 Bacteriophage Mu Gam like protein Prefoldin_2 PF01920.15 gi|307595346|ref|YP_003901663.1| - 0.058 13.1 1.1 0.2 11.4 0.6 2.1 1 1 1 2 2 2 0 Prefoldin subunit Apolipoprotein PF01442.13 gi|307595346|ref|YP_003901663.1| - 0.064 12.7 0.1 0.12 11.8 0.0 1.5 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain ORF6C PF10552.4 gi|307595346|ref|YP_003901663.1| - 0.073 12.8 0.9 1.4 8.6 0.3 2.7 2 1 0 2 2 2 0 ORF6C domain BLOC1_2 PF10046.4 gi|307595346|ref|YP_003901663.1| - 0.078 13.1 0.5 0.34 11.0 0.3 2.0 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phasin PF05597.6 gi|307595346|ref|YP_003901663.1| - 0.085 12.6 0.0 0.23 11.1 0.0 1.7 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Occludin_ELL PF07303.8 gi|307595346|ref|YP_003901663.1| - 0.089 13.5 6.1 0.059 14.0 2.2 2.2 2 1 0 2 2 1 0 Occludin homology domain Prominin PF05478.6 gi|307595346|ref|YP_003901663.1| - 0.092 10.2 0.0 0.13 9.7 0.0 1.1 1 0 0 1 1 1 0 Prominin DUF4375 PF14300.1 gi|307595346|ref|YP_003901663.1| - 0.11 12.4 5.0 0.13 12.2 1.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) Vac_Fusion PF02346.11 gi|307595346|ref|YP_003901663.1| - 0.14 11.5 1.1 0.71 9.3 0.7 2.3 1 1 0 1 1 1 0 Chordopoxvirus fusion protein Gp-FAR-1 PF05823.7 gi|307595346|ref|YP_003901663.1| - 0.16 11.9 2.5 0.53 10.2 0.3 2.2 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF2089 PF09862.4 gi|307595346|ref|YP_003901663.1| - 0.19 11.5 4.9 0.66 9.7 1.4 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2089) Vps5 PF09325.5 gi|307595346|ref|YP_003901663.1| - 0.54 9.4 5.2 0.51 9.5 1.9 2.0 1 1 0 1 1 1 0 Vps5 C terminal like Vpu PF00558.14 gi|307595346|ref|YP_003901663.1| - 2.6 7.6 5.3 12 5.5 0.7 2.6 1 1 1 2 2 2 0 Vpu protein HalX PF08663.5 gi|307595346|ref|YP_003901663.1| - 6.1 6.9 8.1 4.9 7.2 0.9 3.7 2 2 2 4 4 4 0 HalX domain eRF1_3 PF03465.10 gi|307595347|ref|YP_003901664.1| - 6.5e-17 61.8 0.1 3.2e-16 59.5 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|307595347|ref|YP_003901664.1| - 1.2e-15 57.2 0.0 2e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Auto_anti-p27 PF06677.7 gi|307595348|ref|YP_003901665.1| - 1.8e-17 62.7 0.9 2.8e-17 62.1 0.6 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|307595348|ref|YP_003901665.1| - 1.3e-05 25.0 0.0 0.11 12.3 0.0 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme TF_Zn_Ribbon PF08271.7 gi|307595348|ref|YP_003901665.1| - 0.0002 20.5 2.4 0.00038 19.7 1.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|307595348|ref|YP_003901665.1| - 0.0004 19.9 0.1 0.00067 19.2 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|307595348|ref|YP_003901665.1| - 0.0015 18.2 0.1 0.0023 17.6 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|307595348|ref|YP_003901665.1| - 0.0055 16.3 1.3 0.0092 15.6 0.9 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-RING_3 PF14369.1 gi|307595348|ref|YP_003901665.1| - 0.0089 16.0 0.1 0.9 9.5 0.0 2.2 2 0 0 2 2 2 1 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|307595348|ref|YP_003901665.1| - 0.013 15.3 0.1 0.018 14.8 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|307595348|ref|YP_003901665.1| - 0.019 14.4 0.5 0.46 10.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|307595348|ref|YP_003901665.1| - 0.02 14.5 4.0 0.068 12.8 2.8 2.1 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.7 gi|307595348|ref|YP_003901665.1| - 0.029 14.1 0.2 0.053 13.3 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbons A2L_zn_ribbon PF08792.5 gi|307595348|ref|YP_003901665.1| - 0.033 13.6 0.4 0.085 12.3 0.3 1.6 1 1 1 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|307595348|ref|YP_003901665.1| - 0.036 14.0 0.4 9.6 6.2 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Sgf11 PF08209.6 gi|307595348|ref|YP_003901665.1| - 0.054 12.8 1.4 0.61 9.4 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DNA_RNApol_7kD PF03604.8 gi|307595348|ref|YP_003901665.1| - 0.062 12.7 1.0 1.6 8.2 0.2 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|307595348|ref|YP_003901665.1| - 0.069 13.4 0.2 0.14 12.5 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar CpXC PF14353.1 gi|307595348|ref|YP_003901665.1| - 0.08 12.9 0.5 0.17 11.8 0.4 1.6 1 1 0 1 1 1 0 CpXC protein Ribosomal_L37ae PF01780.14 gi|307595348|ref|YP_003901665.1| - 0.092 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Ribosomal L37ae protein family Rad50_zn_hook PF04423.9 gi|307595348|ref|YP_003901665.1| - 0.096 12.1 0.2 0.34 10.4 0.0 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif Ogr_Delta PF04606.7 gi|307595348|ref|YP_003901665.1| - 0.11 12.1 0.6 2.9 7.6 0.0 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.1 gi|307595348|ref|YP_003901665.1| - 0.17 11.1 5.3 6.7 6.0 4.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|307595348|ref|YP_003901665.1| - 1 9.0 6.5 1.6 8.4 2.5 2.0 1 1 1 2 2 2 0 HIT zinc finger DUF1610 PF07754.6 gi|307595348|ref|YP_003901665.1| - 1.3 9.1 5.9 0.45 10.6 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Oxidored_FMN PF00724.15 gi|307595349|ref|YP_003901666.1| - 5.3e-71 239.3 0.0 7.2e-71 238.9 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox PF00070.22 gi|307595349|ref|YP_003901666.1| - 4.7e-09 36.5 1.1 4.4e-06 27.0 0.5 3.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|307595349|ref|YP_003901666.1| - 7.7e-09 35.4 0.0 1.7e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|307595349|ref|YP_003901666.1| - 3.2e-06 26.3 0.6 5.4e-05 22.2 0.3 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Dus PF01207.12 gi|307595349|ref|YP_003901666.1| - 0.00024 20.0 0.0 0.00047 19.0 0.0 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Pyr_redox_3 PF13738.1 gi|307595349|ref|YP_003901666.1| - 0.00025 21.1 0.0 0.00045 20.3 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|307595349|ref|YP_003901666.1| - 0.00033 20.3 0.0 0.00056 19.6 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|307595349|ref|YP_003901666.1| - 0.00036 19.5 0.1 0.00052 18.9 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A PcrB PF01884.12 gi|307595349|ref|YP_003901666.1| - 0.00092 18.5 0.0 0.016 14.5 0.0 2.4 2 0 0 2 2 2 1 PcrB family FAD_binding_2 PF00890.19 gi|307595349|ref|YP_003901666.1| - 0.0011 17.8 0.2 0.0017 17.2 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|307595349|ref|YP_003901666.1| - 0.0026 17.6 0.0 0.0046 16.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|307595349|ref|YP_003901666.1| - 0.0058 15.1 0.5 0.012 14.1 0.4 1.4 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|307595349|ref|YP_003901666.1| - 0.0082 15.2 0.1 0.013 14.5 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|307595349|ref|YP_003901666.1| - 0.015 14.4 1.2 0.024 13.6 0.8 1.3 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.12 gi|307595349|ref|YP_003901666.1| - 0.017 14.2 0.2 0.035 13.2 0.1 1.4 1 0 0 1 1 1 0 Thi4 family Amino_oxidase PF01593.19 gi|307595349|ref|YP_003901666.1| - 0.059 12.4 0.0 0.082 11.9 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.16 gi|307595349|ref|YP_003901666.1| - 0.11 12.1 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_syntA PF00290.15 gi|307595349|ref|YP_003901666.1| - 0.15 10.5 0.0 0.26 9.7 0.0 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Aldo_ket_red PF00248.16 gi|307595350|ref|YP_003901667.1| - 2.7e-67 226.5 0.0 3e-67 226.4 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family ECH PF00378.15 gi|307595351|ref|YP_003901668.1| - 2.9e-22 79.0 0.0 3.2e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Cytochrom_B_N_2 PF13631.1 gi|307595352|ref|YP_003901669.1| - 7.5e-42 142.9 8.0 7.5e-42 142.9 5.5 2.9 3 0 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|307595352|ref|YP_003901669.1| - 0.0052 16.9 2.1 0.0052 16.9 1.4 4.0 5 1 0 5 5 5 1 Cytochrome b(C-terminal)/b6/petD DUF131 PF01998.12 gi|307595352|ref|YP_003901669.1| - 0.013 14.8 0.8 0.013 14.8 0.5 4.2 5 0 0 5 5 5 0 Protein of unknown function DUF131 SecG PF03840.9 gi|307595352|ref|YP_003901669.1| - 0.41 10.4 0.1 0.41 10.4 0.1 4.4 5 0 0 5 5 5 0 Preprotein translocase SecG subunit Rieske PF00355.21 gi|307595353|ref|YP_003901670.1| - 3.7e-13 48.8 0.0 6.6e-13 48.0 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain CytB6-F_Fe-S PF08802.5 gi|307595353|ref|YP_003901670.1| - 0.019 14.9 0.6 0.019 14.9 0.4 2.3 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.4 gi|307595353|ref|YP_003901670.1| - 5.8 7.1 6.5 0.55 10.3 1.2 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence EB_dh PF09459.5 gi|307595354|ref|YP_003901671.1| - 3.3e-63 213.5 0.1 3.8e-63 213.3 0.1 1.0 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase HTH_5 PF01022.15 gi|307595357|ref|YP_003901674.1| - 9.6e-12 44.3 0.2 1.8e-11 43.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|307595357|ref|YP_003901674.1| - 1.8e-07 30.8 0.0 3.8e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|307595357|ref|YP_003901674.1| - 2.2e-06 26.9 0.5 3.5e-06 26.3 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|307595357|ref|YP_003901674.1| - 5e-06 26.1 0.1 8.3e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|307595357|ref|YP_003901674.1| - 0.00012 21.8 0.1 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|307595357|ref|YP_003901674.1| - 0.00022 20.8 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|307595357|ref|YP_003901674.1| - 0.00064 19.3 0.1 0.0011 18.6 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.1 gi|307595357|ref|YP_003901674.1| - 0.00067 19.7 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_12 PF08461.5 gi|307595357|ref|YP_003901674.1| - 0.0015 18.1 0.4 0.0027 17.4 0.3 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain B-block_TFIIIC PF04182.7 gi|307595357|ref|YP_003901674.1| - 0.0077 16.0 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|307595357|ref|YP_003901674.1| - 0.0079 15.8 0.1 0.013 15.1 0.1 1.3 1 0 0 1 1 1 1 MarR family DUF2089 PF09862.4 gi|307595357|ref|YP_003901674.1| - 0.012 15.3 0.1 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Rrf2 PF02082.15 gi|307595357|ref|YP_003901674.1| - 0.013 15.6 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator FeoC PF09012.5 gi|307595357|ref|YP_003901674.1| - 0.013 15.2 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Tnp_ISL3 PF13542.1 gi|307595357|ref|YP_003901674.1| - 0.014 14.5 0.0 0.029 13.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF2250 PF10007.4 gi|307595357|ref|YP_003901674.1| - 0.015 15.1 0.1 0.024 14.5 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.11 gi|307595357|ref|YP_003901674.1| - 0.017 14.6 0.1 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Sigma70_r4_2 PF08281.7 gi|307595357|ref|YP_003901674.1| - 0.019 14.4 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 MobC PF05713.6 gi|307595357|ref|YP_003901674.1| - 0.022 14.7 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial mobilisation protein (MobC) HTH_23 PF13384.1 gi|307595357|ref|YP_003901674.1| - 0.029 14.0 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Phage_rep_org_N PF09681.5 gi|307595357|ref|YP_003901674.1| - 0.038 13.5 0.0 0.09 12.3 0.0 1.6 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF4423 PF14394.1 gi|307595357|ref|YP_003901674.1| - 0.043 13.3 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FaeA PF04703.7 gi|307595357|ref|YP_003901674.1| - 0.059 13.5 0.0 0.089 12.9 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein Fe_dep_repress PF01325.14 gi|307595357|ref|YP_003901674.1| - 0.083 12.8 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|307595357|ref|YP_003901674.1| - 0.087 13.1 0.1 0.16 12.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|307595357|ref|YP_003901674.1| - 0.09 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|307595357|ref|YP_003901674.1| - 0.099 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|307595357|ref|YP_003901674.1| - 0.12 11.6 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DrsE PF02635.10 gi|307595359|ref|YP_003901676.1| - 0.00094 19.2 0.1 0.0029 17.6 0.1 1.7 1 1 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|307595359|ref|YP_003901676.1| - 0.0041 16.9 0.2 0.034 13.9 0.1 1.9 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family TusA PF01206.12 gi|307595360|ref|YP_003901677.1| - 5.3e-24 83.6 0.0 6.1e-24 83.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|307595360|ref|YP_003901677.1| - 0.00031 20.2 0.0 0.0062 16.0 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) DUF2505 PF10698.4 gi|307595360|ref|YP_003901677.1| - 0.13 11.7 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2505) Acylphosphatase PF00708.13 gi|307595361|ref|YP_003901678.1| - 3.9e-25 87.7 0.1 9e-25 86.6 0.0 1.6 1 0 0 1 1 1 1 Acylphosphatase TusA PF01206.12 gi|307595362|ref|YP_003901679.1| - 5.1e-15 54.8 0.1 5.7e-15 54.6 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|307595362|ref|YP_003901679.1| - 0.00032 20.2 0.0 0.00081 18.9 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) PseudoU_synth_1 PF01416.15 gi|307595363|ref|YP_003901680.1| - 2.6e-20 72.8 0.0 7.7e-11 42.3 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase Radical_SAM PF04055.16 gi|307595365|ref|YP_003901682.1| - 1.6e-16 60.9 0.0 4e-16 59.6 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|307595365|ref|YP_003901682.1| - 0.0019 18.0 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain EXS PF03124.9 gi|307595365|ref|YP_003901682.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 EXS family DUF945 PF06097.6 gi|307595365|ref|YP_003901682.1| - 0.13 10.9 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) eIF-6 PF01912.13 gi|307595366|ref|YP_003901683.1| - 1.2e-60 204.0 6.5 1.5e-60 203.7 4.5 1.1 1 0 0 1 1 1 1 eIF-6 family Nit_Regul_Hom PF10126.4 gi|307595366|ref|YP_003901683.1| - 0.11 12.3 0.8 0.66 9.7 0.1 2.5 1 1 1 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF402 PF04167.8 gi|307595367|ref|YP_003901684.1| - 1.2e-14 53.8 1.0 2.5e-14 52.8 0.7 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|307595367|ref|YP_003901684.1| - 0.00011 21.5 0.0 0.00017 20.9 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family O-antigen_lig PF13425.1 gi|307595368|ref|YP_003901685.1| - 0.058 13.3 15.4 0.064 13.2 10.7 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein UPF0104 PF03706.8 gi|307595368|ref|YP_003901685.1| - 0.2 10.8 11.5 0.24 10.6 7.9 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF4117 PF13491.1 gi|307595368|ref|YP_003901685.1| - 0.3 10.5 8.7 0.058 12.8 3.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4117) Glycos_transf_4 PF00953.16 gi|307595368|ref|YP_003901685.1| - 0.36 10.6 10.2 0.44 10.3 7.1 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 4 Na_Ca_ex PF01699.19 gi|307595368|ref|YP_003901685.1| - 0.44 10.1 12.8 0.52 9.9 8.9 1.1 1 0 0 1 1 1 0 Sodium/calcium exchanger protein Intg_mem_TP0381 PF09529.5 gi|307595368|ref|YP_003901685.1| - 0.47 9.6 10.1 1.3 8.2 7.0 1.7 1 1 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) Ferric_reduct PF01794.14 gi|307595368|ref|YP_003901685.1| - 1.7 8.7 8.9 2.1 8.4 5.6 1.7 1 1 1 2 2 2 0 Ferric reductase like transmembrane component MARVEL PF01284.18 gi|307595368|ref|YP_003901685.1| - 3.1 7.6 11.8 5.2 6.8 8.2 1.4 1 1 0 1 1 1 0 Membrane-associating domain Cytochrom_B_C PF00032.12 gi|307595368|ref|YP_003901685.1| - 3.3 7.9 11.0 8.3 6.7 7.1 1.8 1 1 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD CbiQ PF02361.11 gi|307595368|ref|YP_003901685.1| - 5.2 6.5 13.8 6.1 6.3 9.5 1.1 1 0 0 1 1 1 0 Cobalt transport protein FUSC_2 PF13515.1 gi|307595368|ref|YP_003901685.1| - 7.7 6.4 14.1 15 5.4 8.4 1.9 1 1 1 2 2 2 0 Fusaric acid resistance protein-like G3P_acyltransf PF02660.10 gi|307595368|ref|YP_003901685.1| - 8.4 5.9 11.7 9.8 5.7 8.1 1.1 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase PaREP1 PF05942.6 gi|307595369|ref|YP_003901686.1| - 2e-30 104.9 3.4 2.5e-30 104.6 1.4 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|307595369|ref|YP_003901686.1| - 0.033 14.0 0.4 0.064 13.1 0.3 1.5 1 0 0 1 1 1 0 HEPN domain Hydant_A_N PF05378.8 gi|307595369|ref|YP_003901686.1| - 0.13 11.7 0.1 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region DUF2510 PF10708.4 gi|307595369|ref|YP_003901686.1| - 5.8 6.4 8.5 1.5 8.3 3.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2510) CbiA PF01656.18 gi|307595370|ref|YP_003901687.1| - 1.7e-07 30.8 0.0 2.8e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|307595370|ref|YP_003901687.1| - 0.0015 17.7 0.3 0.0043 16.1 0.2 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|307595370|ref|YP_003901687.1| - 0.0038 17.1 0.0 0.0084 16.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|307595370|ref|YP_003901687.1| - 0.017 14.5 0.1 0.064 12.6 0.1 1.7 1 1 0 1 1 1 0 YhjQ protein Metallophos_2 PF12850.2 gi|307595371|ref|YP_003901688.1| - 6.1e-07 29.4 0.0 1e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|307595371|ref|YP_003901688.1| - 0.0049 16.2 0.0 0.67 9.3 0.0 2.3 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase AphA_like PF14557.1 gi|307595371|ref|YP_003901688.1| - 0.12 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator TIM PF00121.13 gi|307595374|ref|YP_003901691.1| - 1.9e-30 105.7 0.0 3e-28 98.5 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|307595374|ref|YP_003901691.1| - 5.2e-08 32.2 0.1 6.9e-08 31.8 0.1 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|307595374|ref|YP_003901691.1| - 1.6e-06 27.3 0.0 3.6e-06 26.2 0.0 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|307595374|ref|YP_003901691.1| - 4.2e-06 26.1 0.1 1.1e-05 24.8 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|307595374|ref|YP_003901691.1| - 1.3e-05 23.8 0.1 2.2e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain NMO PF03060.10 gi|307595374|ref|YP_003901691.1| - 0.00019 20.7 0.1 0.00028 20.1 0.1 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase PcrB PF01884.12 gi|307595374|ref|YP_003901691.1| - 0.0031 16.7 0.4 0.0047 16.2 0.3 1.3 1 0 0 1 1 1 1 PcrB family FMN_dh PF01070.13 gi|307595374|ref|YP_003901691.1| - 0.0073 15.1 0.1 0.02 13.7 0.0 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|307595374|ref|YP_003901691.1| - 0.022 13.7 0.1 0.034 13.1 0.1 1.3 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.16 gi|307595374|ref|YP_003901691.1| - 0.038 12.9 0.0 0.056 12.3 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Dus PF01207.12 gi|307595374|ref|YP_003901691.1| - 0.12 11.1 0.1 0.22 10.3 0.1 1.4 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) CaM_bdg_C0 PF10562.4 gi|307595374|ref|YP_003901691.1| - 1.1 9.1 5.5 0.17 11.7 0.8 1.8 2 0 0 2 2 2 0 Calmodulin-binding domain C0 of NMDA receptor NR1 subunit CopD PF05425.8 gi|307595375|ref|YP_003901692.1| - 0.0054 16.9 0.4 0.009 16.2 0.3 1.4 1 0 0 1 1 1 1 Copper resistance protein D Polysacc_synt_C PF14667.1 gi|307595375|ref|YP_003901692.1| - 0.0057 16.4 2.1 0.0099 15.6 1.5 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain DUF1129 PF06570.6 gi|307595375|ref|YP_003901692.1| - 0.0059 15.9 1.9 0.0061 15.8 0.4 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1129) DUF4407 PF14362.1 gi|307595375|ref|YP_003901692.1| - 0.03 13.2 0.4 0.048 12.6 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TadE PF07811.7 gi|307595375|ref|YP_003901692.1| - 2.2 8.2 7.5 0.2 11.5 1.0 2.3 3 0 0 3 3 3 0 TadE-like protein Aconitase PF00330.15 gi|307595376|ref|YP_003901693.1| - 3.4e-131 437.9 0.0 4.2e-131 437.6 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|307595376|ref|YP_003901693.1| - 9.8e-36 122.7 0.0 1.6e-35 122.0 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain NAD_kinase PF01513.16 gi|307595380|ref|YP_003901697.1| - 6e-31 107.2 1.7 6e-31 107.2 1.2 1.4 2 0 0 2 2 2 1 ATP-NAD kinase MarR PF01047.17 gi|307595380|ref|YP_003901697.1| - 7.6e-05 22.3 0.2 0.00015 21.3 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|307595380|ref|YP_003901697.1| - 9.6e-05 22.0 0.2 0.00026 20.6 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.6 gi|307595380|ref|YP_003901697.1| - 0.00012 21.8 0.1 0.00029 20.6 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.1 gi|307595380|ref|YP_003901697.1| - 0.0011 18.2 1.7 0.0024 17.2 1.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|307595380|ref|YP_003901697.1| - 0.002 17.7 0.8 0.0046 16.5 0.6 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|307595380|ref|YP_003901697.1| - 0.0021 17.6 0.0 0.0048 16.5 0.0 1.6 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|307595380|ref|YP_003901697.1| - 0.0053 16.1 0.3 0.015 14.6 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Sulfolobus_pRN PF05584.6 gi|307595380|ref|YP_003901697.1| - 0.012 15.6 1.3 0.019 14.9 0.3 1.7 2 0 0 2 2 1 0 Sulfolobus plasmid regulatory protein HTH_27 PF13463.1 gi|307595380|ref|YP_003901697.1| - 0.014 15.6 0.0 0.036 14.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|307595380|ref|YP_003901697.1| - 0.015 14.7 0.1 0.031 13.7 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_DeoR PF08220.7 gi|307595380|ref|YP_003901697.1| - 0.031 13.8 0.3 0.06 12.8 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain FeoC PF09012.5 gi|307595380|ref|YP_003901697.1| - 0.054 13.2 0.1 0.1 12.3 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_IclR PF09339.5 gi|307595380|ref|YP_003901697.1| - 0.081 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF751 PF05421.6 gi|307595381|ref|YP_003901698.1| - 0.59 10.4 4.8 0.55 10.5 2.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF751) RNA_pol_L_2 PF13656.1 gi|307595383|ref|YP_003901700.1| - 3e-22 77.8 0.0 3.5e-22 77.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|307595383|ref|YP_003901700.1| - 0.0016 17.5 0.0 0.0021 17.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain LEA_2 PF03168.8 gi|307595385|ref|YP_003901702.1| - 0.028 14.7 0.7 0.088 13.1 0.5 1.8 1 1 0 1 1 1 0 Late embryogenesis abundant protein TMEM173 PF15009.1 gi|307595385|ref|YP_003901702.1| - 0.071 11.9 0.9 0.086 11.6 0.5 1.3 1 1 0 1 1 1 0 Transmembrane protein 173 DUF1356 PF07092.7 gi|307595385|ref|YP_003901702.1| - 0.17 11.0 8.1 0.045 12.9 2.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1356) NfeD PF01957.13 gi|307595385|ref|YP_003901702.1| - 2.5 8.2 4.8 1.8 8.6 1.4 1.9 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding CBS PF00571.23 gi|307595386|ref|YP_003901703.1| - 2.1e-47 158.6 12.9 8.1e-13 47.9 0.0 4.3 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|307595386|ref|YP_003901703.1| - 0.002 18.5 2.0 0.002 18.5 1.4 2.0 2 0 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein DUF2122 PF09895.4 gi|307595387|ref|YP_003901704.1| - 1.5e-25 89.4 0.1 2.1e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) DUF500 PF04366.7 gi|307595387|ref|YP_003901704.1| - 0.033 13.6 0.0 0.099 12.0 0.0 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF500) Oxidored_q4 PF00507.14 gi|307595388|ref|YP_003901705.1| - 1.4e-05 24.8 4.5 1.4e-05 24.8 3.1 1.9 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF3043 PF11241.3 gi|307595388|ref|YP_003901705.1| - 0.69 9.4 12.6 1.9 8.0 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3043) DUF3278 PF11683.3 gi|307595388|ref|YP_003901705.1| - 1.7 8.6 11.7 1.2 9.1 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3278) Pox_P21 PF05313.7 gi|307595388|ref|YP_003901705.1| - 3.5 6.8 13.6 4.3 6.5 5.1 2.1 2 0 0 2 2 2 0 Poxvirus P21 membrane protein VirB3 PF05101.8 gi|307595388|ref|YP_003901705.1| - 7.2 6.6 12.9 4.3 7.4 0.3 2.2 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein Complex1_30kDa PF00329.14 gi|307595389|ref|YP_003901706.1| - 4e-27 94.4 0.0 6.4e-27 93.8 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|307595389|ref|YP_003901706.1| - 2.9e-20 72.2 0.1 5.2e-20 71.3 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF2360 PF10152.4 gi|307595389|ref|YP_003901706.1| - 5.1 7.3 8.1 0.36 11.0 1.8 1.8 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) Complex1_49kDa PF00346.14 gi|307595390|ref|YP_003901707.1| - 1.1e-61 208.2 0.0 1.3e-61 207.9 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NurA PF09376.5 gi|307595392|ref|YP_003901709.1| - 2.8e-18 66.3 0.0 5.6e-18 65.3 0.0 1.5 1 1 0 1 1 1 1 NurA domain DUF2208 PF09973.4 gi|307595393|ref|YP_003901710.1| - 0.055 12.6 2.2 0.11 11.7 1.5 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2208) Wzy_C PF04932.10 gi|307595393|ref|YP_003901710.1| - 0.11 12.2 3.3 0.12 12.1 2.3 1.1 1 0 0 1 1 1 0 O-Antigen ligase CbiA PF01656.18 gi|307595394|ref|YP_003901711.1| - 0.005 16.2 0.4 0.023 14.1 0.3 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|307595394|ref|YP_003901711.1| - 0.012 15.2 0.1 0.049 13.3 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|307595394|ref|YP_003901711.1| - 0.014 14.1 0.1 0.03 13.0 0.1 1.5 1 0 0 1 1 1 0 ArgK protein Zeta_toxin PF06414.7 gi|307595394|ref|YP_003901711.1| - 0.041 12.9 0.0 0.072 12.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin MipZ PF09140.6 gi|307595394|ref|YP_003901711.1| - 0.063 12.3 0.5 0.13 11.2 0.3 1.6 1 1 0 1 1 1 0 ATPase MipZ Pyridox_ox_2 PF12900.2 gi|307595395|ref|YP_003901712.1| - 1.4e-35 122.1 0.0 1.8e-35 121.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|307595395|ref|YP_003901712.1| - 0.039 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Acyl-CoA_dh_1 PF00441.19 gi|307595396|ref|YP_003901713.1| - 7.8e-17 61.7 0.0 1.4e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|307595396|ref|YP_003901713.1| - 0.00011 22.3 0.0 0.0002 21.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|307595397|ref|YP_003901714.1| - 6e-17 60.9 0.0 1.6e-16 59.5 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|307595397|ref|YP_003901714.1| - 9.3e-16 58.4 0.0 2.7e-15 56.9 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|307595397|ref|YP_003901714.1| - 3.2e-15 56.5 1.3 2.6e-13 50.3 0.9 2.2 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|307595397|ref|YP_003901714.1| - 0.11 11.8 0.1 1 8.6 0.1 2.1 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Acyl-CoA_ox_N PF14749.1 gi|307595397|ref|YP_003901714.1| - 0.18 12.0 0.0 0.35 11.1 0.0 1.4 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal AMP-binding PF00501.23 gi|307595398|ref|YP_003901715.1| - 3.2e-80 269.5 0.0 4e-80 269.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|307595398|ref|YP_003901715.1| - 9.8e-18 64.8 0.9 3.1e-17 63.2 0.2 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Thiolase_C PF02803.13 gi|307595399|ref|YP_003901716.1| - 1.4e-06 27.6 0.1 5e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain DUF35 PF01796.12 gi|307595400|ref|YP_003901717.1| - 3.9e-09 36.5 0.7 5.7e-09 36.0 0.5 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|307595400|ref|YP_003901717.1| - 6.8e-08 32.2 3.9 1.1e-07 31.5 2.7 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) NRDD PF13597.1 gi|307595400|ref|YP_003901717.1| - 0.00013 20.1 0.2 0.00016 19.9 0.2 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.14 gi|307595400|ref|YP_003901717.1| - 0.00028 20.5 0.1 0.00042 19.9 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family FdhE PF04216.7 gi|307595400|ref|YP_003901717.1| - 0.00032 20.5 0.2 0.00041 20.1 0.1 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zf-TFIIB PF13453.1 gi|307595400|ref|YP_003901717.1| - 0.016 14.4 0.1 3.1 7.0 0.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger DZR PF12773.2 gi|307595400|ref|YP_003901717.1| - 0.016 15.0 1.0 0.025 14.4 0.7 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|307595400|ref|YP_003901717.1| - 0.02 14.2 0.4 0.29 10.4 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|307595400|ref|YP_003901717.1| - 0.03 13.5 2.3 0.83 8.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|307595400|ref|YP_003901717.1| - 0.034 13.8 3.6 0.91 9.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|307595400|ref|YP_003901717.1| - 0.047 13.4 0.3 0.071 12.8 0.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Ribosomal_L32p PF01783.18 gi|307595400|ref|YP_003901717.1| - 0.05 13.7 0.3 0.079 13.1 0.2 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family NOB1_Zn_bind PF08772.6 gi|307595400|ref|YP_003901717.1| - 0.053 13.3 0.9 0.12 12.2 0.6 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|307595400|ref|YP_003901717.1| - 0.057 12.9 1.0 2.1 7.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|307595400|ref|YP_003901717.1| - 0.063 13.3 1.8 0.51 10.4 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|307595400|ref|YP_003901717.1| - 0.086 12.8 4.5 1.7 8.6 3.1 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|307595400|ref|YP_003901717.1| - 0.9 9.3 4.2 2.7 7.8 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|307595400|ref|YP_003901717.1| - 0.91 9.1 6.5 7.2 6.2 0.2 2.8 2 1 1 3 3 3 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|307595400|ref|YP_003901717.1| - 1.7 8.4 6.9 3 7.7 4.7 1.5 1 1 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_4 PF13717.1 gi|307595400|ref|YP_003901717.1| - 1.7 8.3 7.0 19 5.0 0.3 3.0 2 1 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|307595400|ref|YP_003901717.1| - 8.8 5.8 7.6 5.7 6.5 0.6 2.4 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit 3HCDH_N PF02737.13 gi|307595401|ref|YP_003901718.1| - 2.3e-58 196.8 0.0 3.4e-58 196.2 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|307595401|ref|YP_003901718.1| - 1.7e-22 79.6 0.5 1.1e-13 51.4 0.1 3.6 3 1 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|307595401|ref|YP_003901718.1| - 1e-05 25.4 0.1 2.3e-05 24.3 0.1 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|307595401|ref|YP_003901718.1| - 0.00024 20.8 0.0 0.00061 19.5 0.0 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|307595401|ref|YP_003901718.1| - 0.0051 15.9 0.0 0.011 14.9 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|307595401|ref|YP_003901718.1| - 0.0071 16.5 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|307595401|ref|YP_003901718.1| - 0.13 12.5 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain ThiF PF00899.16 gi|307595401|ref|YP_003901718.1| - 0.15 11.8 0.5 0.29 10.9 0.0 1.6 2 0 0 2 2 2 0 ThiF family B3_4 PF03483.12 gi|307595402|ref|YP_003901719.1| - 9.8e-24 83.7 0.0 1.3e-23 83.3 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain ECR1_N PF14382.1 gi|307595403|ref|YP_003901720.1| - 1.2e-06 27.6 0.0 2.5e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region zf-ribbon_3 PF13248.1 gi|307595403|ref|YP_003901720.1| - 5.3e-05 22.2 1.1 0.12 11.6 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|307595403|ref|YP_003901720.1| - 8.2e-05 22.2 2.4 0.22 11.2 0.2 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|307595403|ref|YP_003901720.1| - 0.00022 20.8 1.0 0.00038 20.0 0.7 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|307595403|ref|YP_003901720.1| - 0.00061 19.1 1.5 0.62 9.6 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|307595403|ref|YP_003901720.1| - 0.0015 18.3 0.1 0.0024 17.6 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|307595403|ref|YP_003901720.1| - 0.0015 18.1 0.3 0.0027 17.3 0.2 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_5 PF13719.1 gi|307595403|ref|YP_003901720.1| - 0.002 17.6 0.6 2.2 7.9 0.0 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|307595403|ref|YP_003901720.1| - 0.0027 17.3 0.9 2.4 7.9 0.0 2.6 2 0 0 2 2 2 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|307595403|ref|YP_003901720.1| - 0.0047 16.6 3.0 0.54 10.0 0.1 2.7 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DNA_RNApol_7kD PF03604.8 gi|307595403|ref|YP_003901720.1| - 0.0049 16.2 0.7 0.014 14.8 0.5 1.7 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.6 gi|307595403|ref|YP_003901720.1| - 0.0058 16.1 4.2 0.016 14.7 2.9 1.7 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|307595403|ref|YP_003901720.1| - 0.012 15.3 0.2 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|307595403|ref|YP_003901720.1| - 0.016 15.1 4.7 0.3 11.0 3.2 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|307595403|ref|YP_003901720.1| - 0.021 14.5 2.5 1.5 8.6 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal EXOSC1 PF10447.4 gi|307595403|ref|YP_003901720.1| - 0.024 14.6 6.0 0.19 11.6 2.3 2.8 2 1 0 2 2 1 0 Exosome component EXOSC1/CSL4 TF_Zn_Ribbon PF08271.7 gi|307595403|ref|YP_003901720.1| - 0.028 13.7 2.3 0.11 11.8 1.6 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding S1 PF00575.18 gi|307595403|ref|YP_003901720.1| - 0.03 14.4 3.7 0.95 9.6 0.3 2.9 1 1 1 2 2 2 0 S1 RNA binding domain zf-ISL3 PF14690.1 gi|307595403|ref|YP_003901720.1| - 0.059 13.4 2.0 11 6.2 0.3 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.3 gi|307595403|ref|YP_003901720.1| - 0.062 13.2 3.6 2 8.4 0.3 2.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DiS_P_DiS PF06750.8 gi|307595403|ref|YP_003901720.1| - 0.073 12.8 0.0 0.58 9.9 0.0 2.0 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Zn_Tnp_IS91 PF14319.1 gi|307595403|ref|YP_003901720.1| - 0.078 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain Auto_anti-p27 PF06677.7 gi|307595403|ref|YP_003901720.1| - 0.094 12.4 1.4 0.22 11.3 1.0 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1610 PF07754.6 gi|307595403|ref|YP_003901720.1| - 0.097 12.8 5.0 5.1 7.2 1.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HypA PF01155.14 gi|307595403|ref|YP_003901720.1| - 0.099 12.3 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF3797 PF12677.2 gi|307595403|ref|YP_003901720.1| - 0.13 11.9 0.3 11 5.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) Ogr_Delta PF04606.7 gi|307595403|ref|YP_003901720.1| - 0.16 11.6 2.6 7.3 6.3 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|307595403|ref|YP_003901720.1| - 0.18 11.3 2.3 6.8 6.2 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-FPG_IleRS PF06827.9 gi|307595403|ref|YP_003901720.1| - 0.2 11.3 4.2 1.3 8.7 0.5 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-IS66 PF13005.2 gi|307595403|ref|YP_003901720.1| - 0.2 11.6 3.8 8.5 6.4 0.2 2.6 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF329 PF03884.9 gi|307595403|ref|YP_003901720.1| - 0.21 11.1 3.4 2.2 7.9 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Zn_ribbon_recom PF13408.1 gi|307595403|ref|YP_003901720.1| - 0.39 11.0 2.6 15 5.9 0.2 2.3 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|307595403|ref|YP_003901720.1| - 1.3 8.8 7.2 2 8.2 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain SurE PF01975.12 gi|307595404|ref|YP_003901721.1| - 6.5e-50 169.1 0.0 8e-50 168.8 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE tRNA-synt_1 PF00133.17 gi|307595406|ref|YP_003901723.1| - 3.8e-170 566.8 1.6 4.9e-170 566.4 1.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|307595406|ref|YP_003901723.1| - 1.2e-26 93.2 0.6 6.8e-08 31.5 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|307595406|ref|YP_003901723.1| - 6.8e-24 84.3 0.6 5e-23 81.5 0.1 2.6 3 0 0 3 3 3 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|307595406|ref|YP_003901723.1| - 1.1e-06 28.1 0.0 3.5e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|307595406|ref|YP_003901723.1| - 0.00019 20.6 0.0 0.038 13.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|307595406|ref|YP_003901723.1| - 0.0052 15.5 0.3 0.034 12.8 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (K) ASCH PF04266.9 gi|307595407|ref|YP_003901724.1| - 3.8e-07 30.4 0.0 6.4e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 ASCH domain HemN_C PF06969.11 gi|307595407|ref|YP_003901724.1| - 0.051 13.6 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 HemN C-terminal domain HTH_27 PF13463.1 gi|307595407|ref|YP_003901724.1| - 0.19 12.0 1.0 16 5.8 0.1 2.8 3 1 0 3 3 3 0 Winged helix DNA-binding domain DUF4492 PF14899.1 gi|307595408|ref|YP_003901725.1| - 0.0062 16.0 0.3 0.025 14.0 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4492) Baculo_11_kDa PF06143.6 gi|307595408|ref|YP_003901725.1| - 0.017 14.4 1.5 0.021 14.2 0.1 1.7 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF843 PF05814.6 gi|307595408|ref|YP_003901725.1| - 0.03 14.1 0.1 0.27 11.0 0.0 2.0 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) ATP-synt_8 PF00895.15 gi|307595408|ref|YP_003901725.1| - 0.056 13.6 0.1 0.12 12.6 0.0 1.5 2 0 0 2 2 2 0 ATP synthase protein 8 TMEM154 PF15102.1 gi|307595408|ref|YP_003901725.1| - 0.076 12.7 0.1 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 TMEM154 protein family ATP-cone PF03477.11 gi|307595409|ref|YP_003901726.1| - 3.5e-06 27.3 1.4 4e-06 27.1 1.0 1.2 1 0 0 1 1 1 1 ATP cone domain SKI PF01202.17 gi|307595409|ref|YP_003901726.1| - 0.013 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Shikimate kinase MobB PF03205.9 gi|307595410|ref|YP_003901727.1| - 6.4e-07 29.1 0.2 1.3e-06 28.1 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|307595410|ref|YP_003901727.1| - 6.4e-05 22.4 0.2 0.00013 21.4 0.1 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|307595410|ref|YP_003901727.1| - 0.0087 14.8 0.0 0.015 14.0 0.0 1.4 1 0 0 1 1 1 1 ArgK protein AAA_5 PF07728.9 gi|307595412|ref|YP_003901729.1| - 6.6e-22 77.7 0.0 1.3e-21 76.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|307595412|ref|YP_003901729.1| - 1.2e-20 73.4 0.0 2.1e-20 72.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|307595412|ref|YP_003901729.1| - 4.1e-13 49.1 0.0 1.8e-12 47.0 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|307595412|ref|YP_003901729.1| - 6.4e-10 38.5 0.3 5.4e-08 32.2 0.2 2.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|307595412|ref|YP_003901729.1| - 2.5e-09 37.4 0.0 7.4e-09 35.9 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307595412|ref|YP_003901729.1| - 9.6e-09 35.4 0.0 2.6e-08 34.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain MCM PF00493.18 gi|307595412|ref|YP_003901729.1| - 6.3e-08 31.7 0.0 1e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 MCM2/3/5 family AAA_PrkA PF08298.6 gi|307595412|ref|YP_003901729.1| - 7.3e-08 31.4 0.0 0.00095 17.9 0.0 2.2 1 1 1 2 2 2 2 PrkA AAA domain AAA_14 PF13173.1 gi|307595412|ref|YP_003901729.1| - 2e-05 24.4 0.0 4.5e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307595412|ref|YP_003901729.1| - 2.2e-05 24.5 0.1 0.00041 20.3 0.0 2.3 1 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|307595412|ref|YP_003901729.1| - 2.9e-05 23.2 1.1 0.0021 17.1 0.7 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|307595412|ref|YP_003901729.1| - 5.4e-05 23.1 0.0 0.00016 21.6 0.0 1.8 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.1 gi|307595412|ref|YP_003901729.1| - 0.00028 20.9 0.0 0.0017 18.4 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain ATP-synt_ab PF00006.20 gi|307595412|ref|YP_003901729.1| - 0.00031 20.3 0.3 0.003 17.0 0.2 2.1 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.1 gi|307595412|ref|YP_003901729.1| - 0.00078 20.2 0.1 0.003 18.3 0.0 2.2 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|307595412|ref|YP_003901729.1| - 0.0013 19.0 0.0 0.0029 17.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|307595412|ref|YP_003901729.1| - 0.0018 17.9 0.0 0.004 16.8 0.0 1.7 2 0 0 2 2 1 1 NACHT domain DEAD PF00270.24 gi|307595412|ref|YP_003901729.1| - 0.0024 17.4 0.0 1.5 8.2 0.1 2.5 2 1 1 3 3 2 2 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|307595412|ref|YP_003901729.1| - 0.0025 17.4 0.0 0.0059 16.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|307595412|ref|YP_003901729.1| - 0.0051 17.1 0.0 0.013 15.8 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_32 PF13654.1 gi|307595412|ref|YP_003901729.1| - 0.0051 15.5 0.2 0.22 10.1 0.0 2.5 2 1 1 3 3 3 1 AAA domain NTPase_1 PF03266.10 gi|307595412|ref|YP_003901729.1| - 0.0064 16.2 0.2 0.073 12.7 0.0 2.4 2 1 0 3 3 3 1 NTPase MobB PF03205.9 gi|307595412|ref|YP_003901729.1| - 0.0068 16.1 0.0 0.023 14.4 0.0 1.9 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|307595412|ref|YP_003901729.1| - 0.009 15.4 0.1 0.1 12.0 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.1 gi|307595412|ref|YP_003901729.1| - 0.022 14.3 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|307595412|ref|YP_003901729.1| - 0.026 13.6 0.0 0.049 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|307595412|ref|YP_003901729.1| - 0.028 14.0 0.0 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|307595412|ref|YP_003901729.1| - 0.039 13.9 0.1 0.12 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|307595412|ref|YP_003901729.1| - 0.04 13.6 0.1 0.082 12.6 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain TIP49 PF06068.8 gi|307595412|ref|YP_003901729.1| - 0.048 12.3 0.0 0.13 11.0 0.0 1.7 1 0 0 1 1 1 0 TIP49 C-terminus Arch_ATPase PF01637.13 gi|307595412|ref|YP_003901729.1| - 0.056 13.1 0.6 1.7 8.3 0.0 2.7 3 1 0 3 3 3 0 Archaeal ATPase AAA_33 PF13671.1 gi|307595412|ref|YP_003901729.1| - 0.07 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|307595412|ref|YP_003901729.1| - 0.071 12.6 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|307595412|ref|YP_003901729.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain VWA_2 PF13519.1 gi|307595413|ref|YP_003901730.1| - 6.6e-23 81.6 0.0 2e-22 80.0 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|307595413|ref|YP_003901730.1| - 3.6e-19 69.1 0.0 1e-18 67.6 0.0 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|307595413|ref|YP_003901730.1| - 6.5e-11 42.1 0.0 1.7e-10 40.8 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|307595413|ref|YP_003901730.1| - 3.1e-09 36.2 2.0 8.4e-09 34.8 0.7 2.1 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein DUF58 PF01882.13 gi|307595413|ref|YP_003901730.1| - 1.6e-06 28.1 0.0 5.6e-06 26.4 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function DUF58 vWA-TerF-like PF10138.4 gi|307595413|ref|YP_003901730.1| - 8.1e-05 22.5 0.2 0.00019 21.3 0.0 1.7 2 0 0 2 2 2 1 vWA found in TerF C terminus Radical_SAM PF04055.16 gi|307595413|ref|YP_003901730.1| - 0.0061 16.7 0.1 1.5 8.9 0.0 2.7 3 0 0 3 3 3 1 Radical SAM superfamily TIR_2 PF13676.1 gi|307595413|ref|YP_003901730.1| - 0.056 13.6 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 TIR domain DNA_primase_lrg PF04104.9 gi|307595414|ref|YP_003901731.1| - 9.8e-29 100.4 0.0 1.5e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Cdd1 PF11731.3 gi|307595414|ref|YP_003901731.1| - 0.14 12.0 0.0 0.37 10.7 0.0 1.7 1 0 0 1 1 1 0 Pathogenicity locus DUF2204 PF09970.4 gi|307595416|ref|YP_003901733.1| - 3.5e-55 186.2 7.1 4e-55 186.1 4.9 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) Ribosomal_L6 PF00347.18 gi|307595417|ref|YP_003901734.1| - 2e-23 82.6 5.2 2.8e-11 43.7 0.7 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 MG1 PF11974.3 gi|307595418|ref|YP_003901735.1| - 0.067 13.7 0.1 0.17 12.4 0.1 1.7 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain Big_1 PF02369.11 gi|307595418|ref|YP_003901735.1| - 0.081 12.8 5.5 0.26 11.1 3.8 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF2341 PF10102.4 gi|307595420|ref|YP_003901737.1| - 0.04 14.0 0.1 0.15 12.2 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF2341) TMEMspv1-c74-12 PF11044.3 gi|307595421|ref|YP_003901738.1| - 0.65 9.5 3.6 1.2 8.7 2.5 1.4 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Pox_I5 PF04713.7 gi|307595422|ref|YP_003901739.1| - 0.027 14.1 2.5 0.085 12.5 1.7 1.8 1 0 0 1 1 1 0 Poxvirus protein I5 DUF1712 PF08217.6 gi|307595422|ref|YP_003901739.1| - 0.064 11.4 0.0 0.089 11.0 0.0 1.1 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1712) DUF4118 PF13493.1 gi|307595423|ref|YP_003901740.1| - 0.31 11.2 5.4 0.57 10.3 3.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) Phage_holin PF04688.8 gi|307595423|ref|YP_003901740.1| - 3.7 7.1 5.4 1.3 8.6 0.9 2.4 3 0 0 3 3 3 0 Phage lysis protein, holin NTP_transf_2 PF01909.18 gi|307595424|ref|YP_003901741.1| - 0.035 14.4 1.0 0.057 13.7 0.6 1.5 1 1 0 1 1 1 0 Nucleotidyltransferase domain DUF86 PF01934.12 gi|307595425|ref|YP_003901742.1| - 1.5e-15 56.8 0.2 1.7e-15 56.6 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 AAA_10 PF12846.2 gi|307595426|ref|YP_003901743.1| - 1.6e-19 70.5 0.3 5.6e-18 65.4 0.2 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|307595426|ref|YP_003901743.1| - 1.6e-19 70.6 0.1 2.8e-19 69.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|307595426|ref|YP_003901743.1| - 4.4e-08 32.1 0.1 2.6e-07 29.6 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|307595426|ref|YP_003901743.1| - 7.5e-05 22.8 0.0 0.066 13.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.13 gi|307595426|ref|YP_003901743.1| - 0.0001 21.8 0.0 0.0052 16.2 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family ArgK PF03308.11 gi|307595426|ref|YP_003901743.1| - 0.00018 20.3 0.1 0.00037 19.3 0.1 1.4 1 0 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|307595426|ref|YP_003901743.1| - 0.00033 20.3 0.0 0.00074 19.2 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|307595426|ref|YP_003901743.1| - 0.0012 18.9 0.6 0.031 14.2 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|307595426|ref|YP_003901743.1| - 0.0027 17.4 0.4 0.012 15.3 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase MMR_HSR1 PF01926.18 gi|307595426|ref|YP_003901743.1| - 0.0045 16.9 0.0 0.014 15.3 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF815 PF05673.8 gi|307595426|ref|YP_003901743.1| - 0.006 15.5 0.0 0.0096 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DUF853 PF05872.7 gi|307595426|ref|YP_003901743.1| - 0.0067 14.8 0.1 0.015 13.6 0.0 1.5 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.22 gi|307595426|ref|YP_003901743.1| - 0.0071 16.6 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_17 PF13207.1 gi|307595426|ref|YP_003901743.1| - 0.031 15.0 0.1 0.21 12.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|307595426|ref|YP_003901743.1| - 0.068 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|307595426|ref|YP_003901743.1| - 0.082 13.2 0.0 0.26 11.6 0.0 2.0 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|307595426|ref|YP_003901743.1| - 0.082 13.0 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Zot PF05707.7 gi|307595426|ref|YP_003901743.1| - 0.11 11.9 0.0 0.84 9.0 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) IstB_IS21 PF01695.12 gi|307595426|ref|YP_003901743.1| - 0.12 11.7 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AA_permease_2 PF13520.1 gi|307595427|ref|YP_003901744.1| - 8.9e-44 149.6 51.6 8.9e-44 149.6 35.7 2.1 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|307595427|ref|YP_003901744.1| - 2.6e-35 121.6 43.8 2.6e-35 121.6 30.3 2.8 1 1 2 3 3 3 1 Amino acid permease OMPdecase PF00215.19 gi|307595428|ref|YP_003901745.1| - 1.2e-19 70.6 0.0 1.6e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family ComA PF02679.10 gi|307595428|ref|YP_003901745.1| - 0.051 12.5 0.0 0.31 10.0 0.0 1.9 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) Fibrillarin_2 PF10113.4 gi|307595428|ref|YP_003901745.1| - 0.07 11.4 0.1 0.088 11.1 0.1 1.2 1 0 0 1 1 1 0 Fibrillarin-like archaeal protein AsnC_trans_reg PF01037.16 gi|307595429|ref|YP_003901746.1| - 1.3e-17 63.2 0.0 2.1e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|307595429|ref|YP_003901746.1| - 2.9e-11 42.5 1.4 5.2e-11 41.7 1.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|307595429|ref|YP_003901746.1| - 1.4e-10 40.5 2.9 2.4e-10 39.7 2.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|307595429|ref|YP_003901746.1| - 0.00045 19.8 0.1 0.00088 18.9 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|307595429|ref|YP_003901746.1| - 0.004 16.7 0.5 0.0076 15.8 0.4 1.4 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|307595429|ref|YP_003901746.1| - 0.0095 15.3 0.5 0.016 14.6 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|307595429|ref|YP_003901746.1| - 0.024 14.2 0.2 0.055 13.1 0.1 1.5 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|307595429|ref|YP_003901746.1| - 0.03 14.1 0.2 0.063 13.0 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|307595429|ref|YP_003901746.1| - 0.033 13.9 0.1 0.052 13.2 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|307595429|ref|YP_003901746.1| - 0.055 13.5 0.0 0.086 12.9 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Fer4 PF00037.22 gi|307595430|ref|YP_003901747.1| - 4.2e-11 41.9 19.3 6.7e-10 38.1 3.3 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|307595430|ref|YP_003901747.1| - 2.5e-10 39.7 15.9 8.7e-10 38.0 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|307595430|ref|YP_003901747.1| - 3.1e-10 40.2 8.1 5.6e-10 39.4 5.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307595430|ref|YP_003901747.1| - 2.7e-09 36.7 8.3 3.5e-09 36.3 5.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307595430|ref|YP_003901747.1| - 2.8e-09 36.3 9.8 3.5e-08 32.9 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307595430|ref|YP_003901747.1| - 8e-09 35.1 6.4 8e-09 35.1 4.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307595430|ref|YP_003901747.1| - 3.2e-08 33.6 8.3 7.3e-08 32.5 5.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307595430|ref|YP_003901747.1| - 6.2e-08 33.0 11.2 4.2e-07 30.4 7.8 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|307595430|ref|YP_003901747.1| - 4.9e-07 30.4 9.0 0.00016 22.3 1.0 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|307595430|ref|YP_003901747.1| - 7.6e-06 25.8 12.7 2.4e-05 24.2 2.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|307595430|ref|YP_003901747.1| - 1.2e-05 25.4 17.9 0.00051 20.4 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|307595430|ref|YP_003901747.1| - 7.2e-05 22.7 8.2 0.00018 21.4 5.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|307595430|ref|YP_003901747.1| - 8.5e-05 22.3 3.8 0.0002 21.1 2.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307595430|ref|YP_003901747.1| - 0.0001 22.6 10.1 0.0045 17.3 1.0 2.3 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307595430|ref|YP_003901747.1| - 0.0014 18.9 1.9 0.0014 18.9 1.3 2.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307595430|ref|YP_003901747.1| - 0.0077 16.5 12.4 0.13 12.7 7.8 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain TatD_DNase PF01026.16 gi|307595431|ref|YP_003901748.1| - 2.8e-51 174.1 0.0 3.2e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|307595431|ref|YP_003901748.1| - 0.00063 19.3 0.4 0.0011 18.5 0.3 1.6 1 1 0 1 1 1 1 Amidohydrolase Ribosomal_S17 PF00366.15 gi|307595432|ref|YP_003901749.1| - 4.7e-15 55.3 1.6 7.4e-15 54.7 1.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S17 Peptidase_M11 PF05548.6 gi|307595432|ref|YP_003901749.1| - 0.023 13.6 0.1 0.03 13.2 0.0 1.1 1 0 0 1 1 1 0 Gametolysin peptidase M11 zf-C3H1 PF10650.4 gi|307595432|ref|YP_003901749.1| - 0.032 13.6 1.0 0.057 12.9 0.7 1.3 1 0 0 1 1 1 0 Putative zinc-finger domain PALP PF00291.20 gi|307595434|ref|YP_003901751.1| - 5e-41 140.9 0.0 6.9e-41 140.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Pep3_Vps18 PF05131.9 gi|307595435|ref|YP_003901752.1| - 0.091 12.1 0.1 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Pep3/Vps18/deep orange family Aminotran_3 PF00202.16 gi|307595436|ref|YP_003901753.1| - 1.2e-106 356.3 0.0 1.5e-106 356.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Bac_Ubq_Cox PF01654.12 gi|307595439|ref|YP_003901756.1| - 6.9e-14 51.0 19.7 6.9e-14 51.0 13.6 2.5 3 0 0 3 3 3 1 Bacterial Cytochrome Ubiquinol Oxidase DUF2842 PF11003.3 gi|307595439|ref|YP_003901756.1| - 0.019 14.8 2.2 0.019 14.8 1.5 4.7 5 1 1 6 6 6 0 Protein of unknown function (DUF2842) Bac_Ubq_Cox PF01654.12 gi|307595440|ref|YP_003901757.1| - 4.5e-60 203.2 37.9 8.3e-58 195.8 26.3 2.0 1 1 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase Pyr_redox_2 PF07992.9 gi|307595441|ref|YP_003901758.1| - 1.2e-35 123.2 2.1 1.4e-18 67.4 0.0 3.6 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|307595441|ref|YP_003901758.1| - 3.2e-22 78.7 3.9 3.7e-17 62.4 0.4 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|307595441|ref|YP_003901758.1| - 5.5e-16 58.5 0.0 1.1e-15 57.5 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|307595441|ref|YP_003901758.1| - 1.1e-13 51.7 0.4 0.00072 19.6 0.0 3.3 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|307595441|ref|YP_003901758.1| - 2.1e-12 46.6 6.1 4.6e-06 25.7 0.1 4.0 4 0 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|307595441|ref|YP_003901758.1| - 4.7e-11 41.8 3.6 0.00049 18.6 0.1 4.0 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_9 PF13454.1 gi|307595441|ref|YP_003901758.1| - 2.9e-10 40.1 5.5 0.0052 16.5 0.0 3.9 4 0 0 4 4 4 3 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|307595441|ref|YP_003901758.1| - 1.1e-07 31.7 0.6 4.1e-05 23.5 0.0 2.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|307595441|ref|YP_003901758.1| - 5.9e-06 25.3 1.1 0.00025 20.0 0.0 3.0 3 1 1 4 4 4 1 FAD binding domain Lycopene_cycl PF05834.7 gi|307595441|ref|YP_003901758.1| - 2.6e-05 23.3 0.5 0.0049 15.8 0.0 2.5 2 1 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.17 gi|307595441|ref|YP_003901758.1| - 4.1e-05 22.6 4.2 0.033 13.0 0.1 3.8 3 1 1 4 4 4 1 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|307595441|ref|YP_003901758.1| - 0.00023 20.1 0.1 0.016 14.1 0.0 2.8 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.14 gi|307595441|ref|YP_003901758.1| - 0.00063 18.9 0.2 0.015 14.4 0.0 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|307595441|ref|YP_003901758.1| - 0.0016 17.5 1.3 0.0051 15.9 0.0 2.2 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|307595441|ref|YP_003901758.1| - 0.0021 17.4 0.5 0.0091 15.3 0.1 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|307595441|ref|YP_003901758.1| - 0.0038 16.3 0.1 0.012 14.7 0.1 1.8 1 0 0 1 1 1 1 Thi4 family 3HCDH_N PF02737.13 gi|307595441|ref|YP_003901758.1| - 0.0077 15.8 1.5 0.042 13.5 0.1 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|307595441|ref|YP_003901758.1| - 0.011 15.7 0.4 3.8 7.5 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain Trp_halogenase PF04820.9 gi|307595441|ref|YP_003901758.1| - 0.02 13.5 0.2 0.04 12.5 0.0 1.6 2 0 0 2 2 2 0 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|307595441|ref|YP_003901758.1| - 0.021 13.8 0.8 0.92 8.4 0.1 2.3 2 0 0 2 2 2 0 FAD binding domain ATP-synt_ab PF00006.20 gi|307595441|ref|YP_003901758.1| - 0.03 13.8 0.0 0.057 12.9 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NAD_binding_2 PF03446.10 gi|307595441|ref|YP_003901758.1| - 0.036 13.8 0.5 0.97 9.2 0.0 2.4 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.17 gi|307595441|ref|YP_003901758.1| - 0.058 13.9 0.5 7.4 7.1 0.0 2.6 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|307595441|ref|YP_003901758.1| - 0.095 12.4 0.1 2.3 7.9 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|307595441|ref|YP_003901758.1| - 0.098 13.1 4.3 1.8 9.0 0.9 3.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|307595441|ref|YP_003901758.1| - 0.26 11.2 3.0 2.8 7.9 0.0 2.8 3 0 0 3 3 3 0 NADH(P)-binding Rubrerythrin PF02915.12 gi|307595442|ref|YP_003901759.1| - 0.014 15.6 0.8 14 5.9 0.0 2.9 1 1 1 3 3 3 0 Rubrerythrin DASH_Dad3 PF08656.5 gi|307595442|ref|YP_003901759.1| - 0.032 13.9 1.1 2.8 7.7 0.0 3.3 3 1 0 3 3 3 0 DASH complex subunit Dad3 DUF1759 PF03564.10 gi|307595442|ref|YP_003901759.1| - 0.05 13.4 1.0 0.62 9.8 0.0 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1759) AA_permease_2 PF13520.1 gi|307595443|ref|YP_003901760.1| - 2.1e-13 49.6 69.9 3.2e-13 49.0 48.4 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|307595443|ref|YP_003901760.1| - 3.9e-08 32.0 62.4 6e-08 31.4 43.3 1.2 1 0 0 1 1 1 1 Amino acid permease Thoc2 PF11732.3 gi|307595443|ref|YP_003901760.1| - 0.024 14.4 0.2 0.061 13.1 0.1 1.6 1 0 0 1 1 1 0 Transcription- and export-related complex subunit DUF650 PF04894.7 gi|307595445|ref|YP_003901762.1| - 4.6e-104 347.7 0.0 5.7e-104 347.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|307595445|ref|YP_003901762.1| - 3.4e-38 129.6 0.0 5.2e-38 129.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Radical_SAM PF04055.16 gi|307595446|ref|YP_003901763.1| - 2.8e-08 34.1 0.0 4.6e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Gp37_Gp68 PF07505.6 gi|307595446|ref|YP_003901763.1| - 0.054 12.6 0.9 0.16 11.1 0.2 2.0 1 1 0 2 2 2 0 Phage protein Gp37/Gp68 DUF1848 PF08902.6 gi|307595446|ref|YP_003901763.1| - 0.3 10.5 8.0 2.8 7.3 3.5 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1848) dsrm PF00035.20 gi|307595447|ref|YP_003901764.1| - 0.096 13.2 0.3 0.15 12.6 0.2 1.3 1 0 0 1 1 1 0 Double-stranded RNA binding motif PIN PF01850.16 gi|307595448|ref|YP_003901765.1| - 6e-12 45.9 0.6 6.9e-12 45.7 0.4 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|307595448|ref|YP_003901765.1| - 0.0063 17.1 0.1 0.007 17.0 0.1 1.2 1 0 0 1 1 1 1 PIN domain Spheroidin PF05541.7 gi|307595448|ref|YP_003901765.1| - 0.11 10.0 0.0 0.14 9.7 0.0 1.1 1 0 0 1 1 1 0 Entomopoxvirus spheroidin protein MoCF_biosynth PF00994.19 gi|307595450|ref|YP_003901767.1| - 1.2e-33 115.4 0.0 1.8e-33 114.9 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain Resolvase PF00239.16 gi|307595452|ref|YP_003901769.1| - 4.8e-30 104.2 0.1 6.2e-30 103.9 0.0 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.1 gi|307595452|ref|YP_003901769.1| - 0.00014 21.3 2.4 0.00018 21.0 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|307595452|ref|YP_003901769.1| - 0.00018 20.7 6.1 0.0088 15.3 0.3 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_28 PF13518.1 gi|307595452|ref|YP_003901769.1| - 0.0017 18.2 0.2 0.0039 17.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|307595452|ref|YP_003901769.1| - 0.0031 16.8 1.5 0.0035 16.6 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|307595452|ref|YP_003901769.1| - 0.004 16.5 0.3 0.009 15.4 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Complex1_LYR PF05347.10 gi|307595452|ref|YP_003901769.1| - 0.0055 16.4 3.3 0.0065 16.2 1.1 2.1 2 1 0 2 2 1 1 Complex 1 protein (LYR family) HTH_38 PF13936.1 gi|307595452|ref|YP_003901769.1| - 0.013 14.9 0.1 0.027 13.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|307595452|ref|YP_003901769.1| - 0.014 14.6 0.0 0.041 13.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family zf-ribbon_3 PF13248.1 gi|307595452|ref|YP_003901769.1| - 0.024 13.8 1.4 0.35 10.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|307595452|ref|YP_003901769.1| - 0.028 14.2 0.6 4.4 7.1 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|307595452|ref|YP_003901769.1| - 0.036 13.3 0.8 4.6 6.6 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|307595452|ref|YP_003901769.1| - 0.047 13.7 0.9 11 6.1 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RepB PF07506.6 gi|307595452|ref|YP_003901769.1| - 0.057 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 RepB plasmid partitioning protein zinc_ribbon_2 PF13240.1 gi|307595452|ref|YP_003901769.1| - 0.081 12.4 2.2 0.2 11.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|307595452|ref|YP_003901769.1| - 0.2 11.3 1.5 5.4 6.7 0.0 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-HIT PF04438.11 gi|307595452|ref|YP_003901769.1| - 0.24 11.0 4.2 0.24 11.0 0.4 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-TFIIB PF13453.1 gi|307595452|ref|YP_003901769.1| - 1.2 8.3 3.3 12 5.2 2.4 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger 2-Hacid_dh_C PF02826.14 gi|307595453|ref|YP_003901770.1| - 1.5e-58 196.9 0.0 2.1e-58 196.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|307595453|ref|YP_003901770.1| - 5e-35 119.8 0.1 5.7e-35 119.6 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|307595453|ref|YP_003901770.1| - 2.8e-05 24.0 0.3 5.6e-05 23.0 0.2 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|307595453|ref|YP_003901770.1| - 0.0015 18.3 0.2 0.003 17.3 0.2 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Gp_dh_N PF00044.19 gi|307595453|ref|YP_003901770.1| - 0.044 13.7 0.1 0.075 12.9 0.1 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Hom_end PF05204.9 gi|307595454|ref|YP_003901771.1| - 0.0043 16.9 0.0 0.0051 16.7 0.0 1.2 1 0 0 1 1 1 1 Homing endonuclease DrsE PF02635.10 gi|307595455|ref|YP_003901772.1| - 1.4e-21 76.7 0.4 1.5e-21 76.6 0.3 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|307595455|ref|YP_003901772.1| - 0.0043 16.8 0.0 0.0091 15.7 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family SBP_bac_11 PF13531.1 gi|307595456|ref|YP_003901773.1| - 8.8e-08 32.0 0.0 1.2e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2972 PF11186.3 gi|307595457|ref|YP_003901774.1| - 0.13 12.1 3.5 0.89 9.4 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2972) CcdA PF07362.7 gi|307595458|ref|YP_003901775.1| - 2.2e-05 24.2 0.4 3.5e-05 23.5 0.3 1.4 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|307595458|ref|YP_003901775.1| - 8e-05 22.3 0.4 8e-05 22.3 0.3 2.4 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family UIM PF02809.15 gi|307595458|ref|YP_003901775.1| - 0.0086 15.5 3.7 1.9 8.2 1.2 3.2 3 0 0 3 3 3 1 Ubiquitin interaction motif DnaB_bind PF10410.4 gi|307595458|ref|YP_003901775.1| - 0.022 14.7 0.5 0.035 14.0 0.4 1.5 1 0 0 1 1 1 0 DnaB-helicase binding domain of primase RHH_3 PF12651.2 gi|307595458|ref|YP_003901775.1| - 0.025 14.3 0.6 0.025 14.3 0.4 2.2 2 1 0 2 2 2 0 Ribbon-helix-helix domain Phage_Gp14 PF10666.4 gi|307595458|ref|YP_003901775.1| - 0.034 14.0 0.1 0.039 13.8 0.1 1.1 1 0 0 1 1 1 0 Phage protein Gp14 DUF217 PF02697.9 gi|307595458|ref|YP_003901775.1| - 0.095 12.9 1.0 0.13 12.5 0.7 1.3 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 Bac_export_2 PF01312.14 gi|307595458|ref|YP_003901775.1| - 0.15 10.9 0.3 0.18 10.6 0.2 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family AP_endonuc_2 PF01261.19 gi|307595459|ref|YP_003901776.1| - 1.1e-22 80.4 0.2 3.3e-22 78.8 0.1 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|307595459|ref|YP_003901776.1| - 0.0003 19.9 0.0 0.00053 19.0 0.0 1.4 1 0 0 1 1 1 1 UV-endonuclease UvdE DUF4121 PF13497.1 gi|307595459|ref|YP_003901776.1| - 0.012 14.6 0.2 0.021 13.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4121) DegS PF05384.6 gi|307595459|ref|YP_003901776.1| - 0.026 13.7 0.0 0.11 11.7 0.0 1.9 2 0 0 2 2 2 0 Sensor protein DegS Macro_2 PF14519.1 gi|307595459|ref|YP_003901776.1| - 0.067 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Macro-like domain NTP_transf_2 PF01909.18 gi|307595460|ref|YP_003901777.1| - 4.9e-10 39.6 0.1 5.8e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Exo_endo_phos PF03372.18 gi|307595460|ref|YP_003901777.1| - 0.015 15.2 0.1 0.015 15.2 0.0 1.1 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family DUF294 PF03445.8 gi|307595460|ref|YP_003901777.1| - 0.078 12.5 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|307595461|ref|YP_003901778.1| - 4.6e-31 107.1 0.0 5.2e-31 106.9 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|307595461|ref|YP_003901778.1| - 0.03 14.1 0.0 0.076 12.8 0.0 1.9 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family Radical_SAM PF04055.16 gi|307595462|ref|YP_003901779.1| - 9.6e-24 84.4 0.0 5e-23 82.0 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily zf-ribbon_3 PF13248.1 gi|307595462|ref|YP_003901779.1| - 0.00064 18.8 1.3 0.36 10.0 0.0 2.6 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|307595462|ref|YP_003901779.1| - 0.00067 19.2 0.7 0.0019 17.8 0.5 1.7 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|307595462|ref|YP_003901779.1| - 0.0035 16.8 1.2 0.25 10.8 0.1 2.5 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|307595462|ref|YP_003901779.1| - 0.004 16.9 3.3 0.0057 16.4 0.1 2.3 2 0 0 2 2 2 1 Double zinc ribbon Fer4_12 PF13353.1 gi|307595462|ref|YP_003901779.1| - 0.0057 16.7 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain zinc_ribbon_2 PF13240.1 gi|307595462|ref|YP_003901779.1| - 0.0072 15.7 4.1 1.6 8.3 0.5 2.7 2 0 0 2 2 2 2 zinc-ribbon domain Fer4_14 PF13394.1 gi|307595462|ref|YP_003901779.1| - 0.0087 16.0 0.5 0.022 14.7 0.0 1.9 2 0 0 2 2 1 1 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.14 gi|307595462|ref|YP_003901779.1| - 0.014 14.8 0.4 4.1 7.0 0.0 2.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-FPG_IleRS PF06827.9 gi|307595462|ref|YP_003901779.1| - 0.033 13.8 1.8 8 6.2 0.1 2.7 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Auto_anti-p27 PF06677.7 gi|307595462|ref|YP_003901779.1| - 0.037 13.7 0.2 5.2 6.9 0.0 2.5 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.11 gi|307595462|ref|YP_003901779.1| - 0.057 13.1 0.2 0.81 9.4 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|307595462|ref|YP_003901779.1| - 0.098 11.9 2.6 0.53 9.6 1.8 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding DUF3235 PF11574.3 gi|307595462|ref|YP_003901779.1| - 0.1 12.8 0.0 0.95 9.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3235) tRNA-synt_1f PF01921.13 gi|307595462|ref|YP_003901779.1| - 0.1 11.2 0.1 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (K) zinc_ribbon_4 PF13717.1 gi|307595462|ref|YP_003901779.1| - 0.43 10.2 7.1 0.23 11.2 0.6 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DUF1610 PF07754.6 gi|307595462|ref|YP_003901779.1| - 0.52 10.4 4.9 4.2 7.5 0.7 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CpXC PF14353.1 gi|307595462|ref|YP_003901779.1| - 0.74 9.7 4.1 0.35 10.8 0.3 2.3 2 1 0 2 2 2 0 CpXC protein zinc_ribbon_5 PF13719.1 gi|307595462|ref|YP_003901779.1| - 1.1 8.9 7.9 0.23 11.1 0.6 2.8 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|307595462|ref|YP_003901779.1| - 1.2 8.8 4.8 0.27 10.9 0.2 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DoxA PF07680.6 gi|307595463|ref|YP_003901780.1| - 0.088 12.4 0.3 0.15 11.7 0.2 1.3 1 0 0 1 1 1 0 TQO small subunit DoxA TcdB_N PF12918.2 gi|307595464|ref|YP_003901781.1| - 0.11 12.6 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain TerB-C PF15615.1 gi|307595465|ref|YP_003901782.1| - 0.12 12.6 0.2 0.15 12.2 0.1 1.1 1 0 0 1 1 1 0 TerB-C domain DDRGK PF09756.4 gi|307595465|ref|YP_003901782.1| - 0.2 11.0 3.8 0.59 9.5 2.7 2.0 1 1 0 1 1 1 0 DDRGK domain Tic20 PF09685.5 gi|307595466|ref|YP_003901783.1| - 3.3e-10 39.9 12.2 4e-10 39.6 8.4 1.0 1 0 0 1 1 1 1 Tic20-like protein T_cell_tran_alt PF15128.1 gi|307595466|ref|YP_003901783.1| - 0.75 9.2 3.7 0.54 9.7 1.6 1.6 1 1 0 1 1 1 0 T-cell leukemia translocation-altered Fucose_iso_C PF02952.12 gi|307595467|ref|YP_003901784.1| - 0.0089 15.5 0.0 0.02 14.3 0.0 1.6 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain Wx5_PLAF3D7 PF09688.5 gi|307595467|ref|YP_003901784.1| - 0.031 14.2 0.1 0.052 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (Wx5_PLAF3D7) RNA_pol_L_2 PF13656.1 gi|307595467|ref|YP_003901784.1| - 0.17 11.3 0.0 0.36 10.2 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain OppC_N PF12911.2 gi|307595468|ref|YP_003901785.1| - 0.16 11.3 0.4 0.3 10.5 0.3 1.5 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Thermopsin PF05317.6 gi|307595469|ref|YP_003901786.1| - 7.1e-56 189.0 11.6 7.1e-56 189.0 8.0 3.3 3 1 0 3 3 3 1 Thermopsin DUF1883 PF08980.5 gi|307595469|ref|YP_003901786.1| - 0.00073 19.0 0.1 0.0027 17.1 0.1 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1883) GATase_6 PF13522.1 gi|307595470|ref|YP_003901787.1| - 1.6e-06 28.0 0.0 2.8e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|307595470|ref|YP_003901787.1| - 0.00082 18.1 0.1 0.0012 17.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II CbiA PF01656.18 gi|307595471|ref|YP_003901788.1| - 3.7e-18 65.6 0.0 5e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|307595471|ref|YP_003901788.1| - 5.8e-12 45.8 0.1 3.3e-11 43.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|307595471|ref|YP_003901788.1| - 2e-06 27.1 0.1 3.9e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|307595471|ref|YP_003901788.1| - 1.5e-05 24.1 1.4 9.3e-05 21.6 0.0 2.8 3 1 0 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|307595471|ref|YP_003901788.1| - 0.00011 21.3 0.0 0.002 17.2 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.1 gi|307595471|ref|YP_003901788.1| - 0.00015 21.2 0.3 0.00042 19.7 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|307595471|ref|YP_003901788.1| - 0.00098 18.8 0.1 0.0017 18.0 0.1 1.3 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|307595471|ref|YP_003901788.1| - 0.005 16.4 0.0 0.015 14.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|307595471|ref|YP_003901788.1| - 0.0055 15.8 0.2 0.0099 14.9 0.1 1.4 1 0 0 1 1 1 1 VirC1 protein AAA_14 PF13173.1 gi|307595471|ref|YP_003901788.1| - 0.0069 16.2 0.2 0.46 10.4 0.0 3.3 1 1 1 2 2 2 1 AAA domain YhjQ PF06564.7 gi|307595471|ref|YP_003901788.1| - 0.021 14.1 0.1 0.069 12.4 0.0 1.8 2 1 0 2 2 2 0 YhjQ protein AAA_10 PF12846.2 gi|307595471|ref|YP_003901788.1| - 0.05 13.0 0.2 0.38 10.1 0.1 2.0 2 0 0 2 2 2 0 AAA-like domain ATP_bind_1 PF03029.12 gi|307595471|ref|YP_003901788.1| - 0.065 12.7 0.1 0.5 9.8 0.1 2.2 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein PhoH PF02562.11 gi|307595471|ref|YP_003901788.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Zeta_toxin PF06414.7 gi|307595471|ref|YP_003901788.1| - 0.14 11.2 0.1 0.33 10.0 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ArgK PF03308.11 gi|307595471|ref|YP_003901788.1| - 0.2 10.3 0.0 0.36 9.5 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Abhydrolase_6 PF12697.2 gi|307595473|ref|YP_003901790.1| - 5.4e-42 144.2 0.1 6.2e-42 144.0 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|307595473|ref|YP_003901790.1| - 1.5e-32 113.0 0.0 4.7e-31 108.1 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|307595473|ref|YP_003901790.1| - 4.9e-19 68.5 0.0 1.1e-18 67.3 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|307595473|ref|YP_003901790.1| - 9.5e-07 27.5 0.0 1.1e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Ndr family DLH PF01738.13 gi|307595473|ref|YP_003901790.1| - 0.00014 21.2 0.0 0.0056 15.9 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|307595473|ref|YP_003901790.1| - 0.00036 19.8 0.0 0.0049 16.1 0.0 2.1 1 1 1 2 2 2 1 Prolyl oligopeptidase family PGAP1 PF07819.8 gi|307595473|ref|YP_003901790.1| - 0.0013 18.3 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 PGAP1-like protein Abhydrolase_2 PF02230.11 gi|307595473|ref|YP_003901790.1| - 0.0019 17.6 0.0 1.9 7.8 0.0 2.2 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.5 gi|307595473|ref|YP_003901790.1| - 0.0037 17.1 0.0 0.0059 16.4 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.8 gi|307595473|ref|YP_003901790.1| - 0.0041 16.5 0.1 0.034 13.6 0.0 2.1 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Thioesterase PF00975.15 gi|307595473|ref|YP_003901790.1| - 0.006 16.8 0.0 0.0078 16.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain DUF2305 PF10230.4 gi|307595473|ref|YP_003901790.1| - 0.043 13.2 0.0 0.072 12.4 0.0 1.4 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2305) Hydrolase_4 PF12146.3 gi|307595473|ref|YP_003901790.1| - 0.059 13.2 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Putative lysophospholipase Nucleo_P87 PF07267.6 gi|307595473|ref|YP_003901790.1| - 0.11 11.1 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 Esterase PF00756.15 gi|307595473|ref|YP_003901790.1| - 0.16 11.3 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Radical_SAM PF04055.16 gi|307595474|ref|YP_003901791.1| - 8.8e-19 68.2 0.0 3.6e-18 66.3 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|307595474|ref|YP_003901791.1| - 2.3e-18 66.0 0.0 4.4e-18 65.1 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Fer4_14 PF13394.1 gi|307595474|ref|YP_003901791.1| - 0.051 13.6 0.0 0.2 11.7 0.0 1.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain UPF0066 PF01980.11 gi|307595475|ref|YP_003901792.1| - 2.5e-36 124.2 0.0 3.9e-36 123.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Methyltransf_23 PF13489.1 gi|307595476|ref|YP_003901793.1| - 1.5e-14 53.9 0.0 1.9e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|307595476|ref|YP_003901793.1| - 1.5e-13 51.0 0.0 2.1e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307595476|ref|YP_003901793.1| - 1.2e-09 38.5 0.0 2.1e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307595476|ref|YP_003901793.1| - 9.9e-08 32.5 0.0 2.4e-07 31.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307595476|ref|YP_003901793.1| - 2e-07 30.7 0.0 3.2e-07 30.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|307595476|ref|YP_003901793.1| - 0.00041 19.5 0.0 0.00056 19.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|307595476|ref|YP_003901793.1| - 0.0038 17.5 0.0 0.0061 16.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|307595476|ref|YP_003901793.1| - 0.005 16.8 0.0 0.0077 16.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain HEPN PF05168.9 gi|307595477|ref|YP_003901794.1| - 2e-19 69.6 0.2 5.4e-19 68.2 0.1 1.6 1 1 0 1 1 1 1 HEPN domain TPR_2 PF07719.12 gi|307595477|ref|YP_003901794.1| - 0.15 12.0 0.5 9.7 6.3 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|307595478|ref|YP_003901795.1| - 7.9e-07 29.3 0.1 1.1e-06 28.8 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF1129 PF06570.6 gi|307595479|ref|YP_003901796.1| - 0.11 11.7 0.1 0.12 11.6 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) IncA PF04156.9 gi|307595479|ref|YP_003901796.1| - 0.35 10.4 3.1 0.41 10.2 2.1 1.1 1 0 0 1 1 1 0 IncA protein Form-deh_trans PF09163.6 gi|307595479|ref|YP_003901796.1| - 1.1 8.8 4.0 3.4 7.2 0.3 2.1 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane Thioredox_DsbH PF03190.10 gi|307595480|ref|YP_003901797.1| - 3.5e-59 199.1 0.0 5.8e-59 198.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|307595480|ref|YP_003901797.1| - 1.2e-13 50.8 0.0 2.1e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|307595480|ref|YP_003901797.1| - 7e-05 22.9 0.0 0.00017 21.7 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|307595480|ref|YP_003901797.1| - 0.0019 17.8 0.1 0.0038 16.8 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin Sigma70_r4 PF04545.11 gi|307595480|ref|YP_003901797.1| - 0.0028 16.9 0.0 0.0057 15.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_17 PF12728.2 gi|307595480|ref|YP_003901797.1| - 0.025 14.8 0.0 0.13 12.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain C5-epim_C PF06662.8 gi|307595480|ref|YP_003901797.1| - 0.05 12.9 1.4 0.65 9.2 0.0 3.0 3 1 0 3 3 3 0 D-glucuronyl C5-epimerase C-terminus HTH_10 PF04967.7 gi|307595480|ref|YP_003901797.1| - 0.059 12.9 0.2 0.16 11.6 0.2 1.8 1 0 0 1 1 1 0 HTH DNA binding domain Clathrin-link PF09268.5 gi|307595480|ref|YP_003901797.1| - 0.77 8.8 6.9 0.22 10.5 0.2 3.2 4 0 0 4 4 4 0 Clathrin, heavy-chain linker Rhodanese PF00581.15 gi|307595481|ref|YP_003901798.1| - 1.5e-28 99.3 0.0 6.4e-19 68.3 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain SLT_beta PF02258.11 gi|307595481|ref|YP_003901798.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Shiga-like toxin beta subunit DrsE_2 PF13686.1 gi|307595482|ref|YP_003901799.1| - 7.3e-08 32.3 0.0 1e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|307595482|ref|YP_003901799.1| - 0.00015 21.8 0.2 0.00058 19.9 0.1 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family Lyase_1 PF00206.15 gi|307595483|ref|YP_003901800.1| - 4.8e-85 285.4 0.0 6.3e-85 285.0 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|307595483|ref|YP_003901800.1| - 5.1e-11 42.4 2.5 6.3e-11 42.1 0.0 2.5 3 0 0 3 3 3 1 Fumarase C C-terminus Pirin PF02678.11 gi|307595484|ref|YP_003901801.1| - 2.1e-37 127.2 0.0 3.8e-37 126.4 0.0 1.4 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.8 gi|307595484|ref|YP_003901801.1| - 3.9e-32 110.4 0.1 7.3e-31 106.3 0.0 2.4 3 0 0 3 3 3 1 Pirin C-terminal cupin domain Cupin_2 PF07883.6 gi|307595484|ref|YP_003901801.1| - 3.3e-05 23.2 3.0 0.022 14.2 0.3 2.8 2 1 0 2 2 2 2 Cupin domain Cupin_3 PF05899.7 gi|307595484|ref|YP_003901801.1| - 0.032 13.6 0.4 0.74 9.2 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF861) HTH_5 PF01022.15 gi|307595485|ref|YP_003901802.1| - 7.4e-16 57.5 0.3 1.7e-15 56.4 0.1 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|307595485|ref|YP_003901802.1| - 8.1e-11 41.5 0.0 1.2e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|307595485|ref|YP_003901802.1| - 1.1e-06 27.9 0.3 2.3e-06 26.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|307595485|ref|YP_003901802.1| - 3.1e-06 26.7 0.0 6.2e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|307595485|ref|YP_003901802.1| - 0.0003 20.2 0.5 0.001 18.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|307595485|ref|YP_003901802.1| - 0.0019 18.1 0.0 0.004 17.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|307595485|ref|YP_003901802.1| - 0.002 17.6 0.0 0.0045 16.5 0.0 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|307595485|ref|YP_003901802.1| - 0.0024 17.5 0.0 0.0037 16.8 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|307595485|ref|YP_003901802.1| - 0.0033 17.5 0.1 0.0057 16.7 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_9 PF08221.6 gi|307595485|ref|YP_003901802.1| - 0.011 15.6 0.1 0.019 14.8 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Penicillinase_R PF03965.11 gi|307595485|ref|YP_003901802.1| - 0.023 14.7 0.1 0.037 14.1 0.0 1.5 1 1 0 1 1 1 0 Penicillinase repressor LexA_DNA_bind PF01726.11 gi|307595485|ref|YP_003901802.1| - 0.024 14.1 0.0 0.053 13.0 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain HTH_45 PF14947.1 gi|307595485|ref|YP_003901802.1| - 0.037 13.8 0.3 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix KorB PF08535.5 gi|307595485|ref|YP_003901802.1| - 0.048 13.8 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 KorB domain Arg_repressor PF01316.16 gi|307595485|ref|YP_003901802.1| - 0.057 12.9 0.6 0.086 12.4 0.0 1.7 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain DUF4423 PF14394.1 gi|307595485|ref|YP_003901802.1| - 0.088 12.3 0.0 0.11 12.0 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_Tnp_Tc3_1 PF11427.3 gi|307595485|ref|YP_003901802.1| - 0.1 12.2 0.2 0.24 11.0 0.1 1.7 1 0 0 1 1 1 0 Tc3 transposase Redoxin PF08534.5 gi|307595486|ref|YP_003901803.1| - 1.4e-11 44.1 0.0 1.8e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|307595486|ref|YP_003901803.1| - 9e-09 35.0 0.0 2.6e-08 33.5 0.0 1.6 2 0 0 2 2 2 1 AhpC/TSA family DUF929 PF06053.6 gi|307595486|ref|YP_003901803.1| - 4e-05 22.8 4.0 5e-05 22.5 2.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF929) Thioredoxin_8 PF13905.1 gi|307595486|ref|YP_003901803.1| - 0.00028 20.9 0.0 0.00079 19.4 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|307595486|ref|YP_003901803.1| - 0.019 15.1 0.0 0.1 12.7 0.0 2.2 1 1 0 1 1 1 0 Thioredoxin-like domain SCO1-SenC PF02630.9 gi|307595486|ref|YP_003901803.1| - 0.021 14.4 0.1 0.41 10.2 0.0 2.0 2 0 0 2 2 2 0 SCO1/SenC Thioredoxin PF00085.15 gi|307595486|ref|YP_003901803.1| - 0.08 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin EI24 PF07264.6 gi|307595486|ref|YP_003901803.1| - 0.14 11.5 2.6 0.19 11.1 1.8 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) GRAM PF02893.15 gi|307595487|ref|YP_003901804.1| - 0.051 13.0 1.4 0.19 11.2 0.1 2.2 2 0 0 2 2 2 0 GRAM domain zf-FCS PF06467.9 gi|307595488|ref|YP_003901805.1| - 6.5e-06 25.6 1.7 8.2e-06 25.3 1.2 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ta0938 PF11494.3 gi|307595488|ref|YP_003901805.1| - 7.2e-05 22.8 0.2 7.9e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 Ta0938 YHS PF04945.8 gi|307595488|ref|YP_003901805.1| - 0.00017 21.3 0.5 0.00023 20.9 0.4 1.2 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|307595488|ref|YP_003901805.1| - 0.00021 21.3 3.6 0.0003 20.8 2.5 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain PhnA_Zn_Ribbon PF08274.7 gi|307595488|ref|YP_003901805.1| - 0.00095 18.8 6.4 0.43 10.3 2.3 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|307595488|ref|YP_003901805.1| - 0.0028 17.4 3.1 0.005 16.6 2.2 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain ATPase-cat_bd PF12156.3 gi|307595488|ref|YP_003901805.1| - 0.0044 17.5 3.8 0.0053 17.2 2.6 1.2 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Zn-ribbon_8 PF09723.5 gi|307595488|ref|YP_003901805.1| - 0.022 14.7 5.1 1.6 8.7 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain LIM PF00412.17 gi|307595488|ref|YP_003901805.1| - 0.036 14.1 4.9 1 9.4 0.0 2.0 1 1 1 2 2 2 0 LIM domain DUF2318 PF10080.4 gi|307595488|ref|YP_003901805.1| - 0.071 12.8 2.0 0.098 12.4 0.0 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) Zn_ribbon_2 PF12674.2 gi|307595488|ref|YP_003901805.1| - 0.089 13.1 0.3 0.1 12.9 0.2 1.1 1 0 0 1 1 1 0 Putative zinc ribbon domain DUF3268 PF11672.3 gi|307595488|ref|YP_003901805.1| - 0.099 12.7 1.3 0.11 12.5 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) Zn_ribbon_recom PF13408.1 gi|307595488|ref|YP_003901805.1| - 0.1 12.8 1.0 0.13 12.4 0.7 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF164 PF02591.10 gi|307595488|ref|YP_003901805.1| - 0.13 12.1 1.6 0.18 11.6 1.1 1.3 1 0 0 1 1 1 0 Putative zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|307595488|ref|YP_003901805.1| - 0.26 10.7 3.6 0.63 9.5 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|307595488|ref|YP_003901805.1| - 0.27 10.9 3.1 1.2 8.8 0.4 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family NinF PF05810.7 gi|307595488|ref|YP_003901805.1| - 0.41 10.4 8.0 39 4.1 5.6 2.1 1 1 0 1 1 1 0 NinF protein Ribosomal_L36 PF00444.13 gi|307595488|ref|YP_003901805.1| - 0.51 10.3 0.0 0.51 10.3 0.0 1.9 2 0 0 2 2 2 0 Ribosomal protein L36 Sgf11 PF08209.6 gi|307595488|ref|YP_003901805.1| - 0.59 9.4 4.3 3.9 6.8 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C3HC4_3 PF13920.1 gi|307595488|ref|YP_003901805.1| - 0.67 9.6 7.5 6 6.6 5.2 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Metallothio_Pro PF02069.11 gi|307595488|ref|YP_003901805.1| - 0.77 9.6 5.2 1.6 8.5 3.6 1.6 1 1 0 1 1 1 0 Prokaryotic metallothionein OrfB_Zn_ribbon PF07282.6 gi|307595488|ref|YP_003901805.1| - 1.5 8.5 4.8 5.8 6.6 0.1 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Elf1 PF05129.8 gi|307595488|ref|YP_003901805.1| - 1.7 8.3 5.6 9.4 6.0 1.2 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Evr1_Alr PF04777.8 gi|307595488|ref|YP_003901805.1| - 2.1 8.2 5.7 3.5 7.5 4.0 1.6 1 1 0 1 1 1 0 Erv1 / Alr family zinc_ribbon_2 PF13240.1 gi|307595488|ref|YP_003901805.1| - 2.9 7.4 7.5 2.4 7.7 0.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|307595488|ref|YP_003901805.1| - 4 7.1 7.4 38 4.0 5.1 2.1 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Pyr_redox_2 PF07992.9 gi|307595489|ref|YP_003901806.1| - 1.2e-38 133.0 4.3 4.1e-36 124.7 3.0 3.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|307595489|ref|YP_003901806.1| - 1.8e-29 101.9 0.1 3.3e-29 101.1 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|307595489|ref|YP_003901806.1| - 8.5e-12 45.3 0.1 8.5e-12 45.3 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|307595489|ref|YP_003901806.1| - 6.8e-10 39.3 0.0 1.2e-06 28.7 0.1 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|307595489|ref|YP_003901806.1| - 3.2e-08 32.8 4.6 0.0006 18.7 1.1 3.9 3 1 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.19 gi|307595489|ref|YP_003901806.1| - 9.5e-06 24.7 3.4 0.00022 20.2 0.0 3.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|307595489|ref|YP_003901806.1| - 0.0013 17.2 0.8 2.1 6.7 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein K_oxygenase PF13434.1 gi|307595489|ref|YP_003901806.1| - 0.0043 16.0 0.0 0.016 14.1 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.2 gi|307595489|ref|YP_003901806.1| - 0.0081 15.2 1.2 0.078 12.0 0.0 2.6 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|307595489|ref|YP_003901806.1| - 0.0092 14.8 2.4 1.9 7.2 0.5 3.1 2 1 1 3 3 3 1 FAD binding domain CoA_binding_2 PF13380.1 gi|307595489|ref|YP_003901806.1| - 0.049 13.8 0.2 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 CoA binding domain TusA PF01206.12 gi|307595491|ref|YP_003901808.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA Rhodanese PF00581.15 gi|307595492|ref|YP_003901809.1| - 5.7e-42 142.6 0.1 2.1e-23 82.8 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain DUF1641 PF07849.6 gi|307595493|ref|YP_003901810.1| - 1.1e-12 47.3 0.1 1.7e-12 46.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) PmbA_TldD PF01523.11 gi|307595494|ref|YP_003901811.1| - 2.8e-32 112.1 0.1 3.5e-32 111.8 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|307595495|ref|YP_003901812.1| - 3.6e-59 200.4 0.3 4.6e-59 200.0 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase bPH_2 PF03703.9 gi|307595496|ref|YP_003901813.1| - 4.3e-06 26.6 0.1 7.9e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 Bacterial PH domain ABC_tran PF00005.22 gi|307595497|ref|YP_003901814.1| - 1.5e-27 96.5 0.0 1.9e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|307595497|ref|YP_003901814.1| - 1.1e-20 73.7 0.2 1.8e-20 73.0 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|307595497|ref|YP_003901814.1| - 3.4e-13 50.2 0.1 9.9e-12 45.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|307595497|ref|YP_003901814.1| - 1.3e-06 27.8 0.0 2.4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|307595497|ref|YP_003901814.1| - 2.2e-06 27.0 0.0 3.4e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|307595497|ref|YP_003901814.1| - 2.6e-06 27.6 0.2 9.9e-05 22.4 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307595497|ref|YP_003901814.1| - 2.4e-05 24.4 0.0 5.1e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|307595497|ref|YP_003901814.1| - 0.00018 20.9 0.0 0.016 14.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|307595497|ref|YP_003901814.1| - 0.00081 18.5 0.1 0.011 14.7 0.1 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|307595497|ref|YP_003901814.1| - 0.0012 19.0 0.0 0.009 16.2 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|307595497|ref|YP_003901814.1| - 0.0013 18.2 0.1 0.071 12.5 0.0 2.4 2 1 0 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|307595497|ref|YP_003901814.1| - 0.0029 18.3 0.0 0.0063 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|307595497|ref|YP_003901814.1| - 0.0063 16.8 0.0 0.026 14.8 0.0 1.8 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|307595497|ref|YP_003901814.1| - 0.015 14.6 0.1 0.036 13.4 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|307595497|ref|YP_003901814.1| - 0.017 14.8 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|307595497|ref|YP_003901814.1| - 0.036 13.5 0.0 0.065 12.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|307595497|ref|YP_003901814.1| - 0.037 13.8 0.0 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 MobB PF03205.9 gi|307595497|ref|YP_003901814.1| - 0.039 13.6 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|307595497|ref|YP_003901814.1| - 0.043 13.7 0.0 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|307595497|ref|YP_003901814.1| - 0.043 12.9 0.0 0.11 11.6 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|307595497|ref|YP_003901814.1| - 0.055 12.6 0.0 0.1 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TIP49 PF06068.8 gi|307595497|ref|YP_003901814.1| - 0.066 11.9 0.0 0.087 11.5 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus NACHT PF05729.7 gi|307595497|ref|YP_003901814.1| - 0.071 12.7 0.2 0.16 11.5 0.0 1.7 1 1 1 2 2 2 0 NACHT domain AAA_19 PF13245.1 gi|307595497|ref|YP_003901814.1| - 0.12 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|307595497|ref|YP_003901814.1| - 0.2 11.9 0.1 0.24 11.6 0.0 1.3 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|307595498|ref|YP_003901815.1| - 5.9e-35 120.5 0.0 7.8e-35 120.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|307595498|ref|YP_003901815.1| - 1.7e-19 69.9 0.1 3.2e-19 69.0 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|307595498|ref|YP_003901815.1| - 1e-11 45.3 0.1 4.3e-09 36.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|307595498|ref|YP_003901815.1| - 9.4e-07 29.0 0.2 1.1e-05 25.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|307595498|ref|YP_003901815.1| - 1.6e-06 27.5 0.1 3.5e-06 26.4 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|307595498|ref|YP_003901815.1| - 0.00035 20.0 0.1 0.00064 19.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|307595498|ref|YP_003901815.1| - 0.0004 19.0 0.0 0.32 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|307595498|ref|YP_003901815.1| - 0.00054 19.4 0.3 0.31 10.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|307595498|ref|YP_003901815.1| - 0.0013 18.6 0.1 0.0082 16.0 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|307595498|ref|YP_003901815.1| - 0.0018 18.2 0.7 0.0053 16.7 0.5 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|307595498|ref|YP_003901815.1| - 0.004 17.4 0.0 0.0093 16.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|307595498|ref|YP_003901815.1| - 0.0064 15.6 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|307595498|ref|YP_003901815.1| - 0.008 16.3 0.1 0.18 12.0 0.0 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|307595498|ref|YP_003901815.1| - 0.019 14.0 0.0 0.04 13.0 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_10 PF12846.2 gi|307595498|ref|YP_003901815.1| - 0.024 14.0 0.1 0.3 10.4 0.0 2.0 1 1 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|307595498|ref|YP_003901815.1| - 0.026 14.3 0.4 0.13 12.0 0.3 2.0 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|307595498|ref|YP_003901815.1| - 0.071 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|307595498|ref|YP_003901815.1| - 0.082 12.5 0.3 0.17 11.5 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_15 PF13175.1 gi|307595498|ref|YP_003901815.1| - 0.086 11.8 0.2 5.5 5.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|307595498|ref|YP_003901815.1| - 0.092 13.0 0.1 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|307595498|ref|YP_003901815.1| - 0.13 12.0 0.2 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|307595498|ref|YP_003901815.1| - 0.16 12.4 0.0 1.2 9.6 0.0 2.1 2 0 0 2 2 2 0 Miro-like protein AAA_17 PF13207.1 gi|307595498|ref|YP_003901815.1| - 0.17 12.7 0.4 0.57 11.0 0.2 1.7 1 1 0 1 1 1 0 AAA domain SBP_bac_5 PF00496.17 gi|307595499|ref|YP_003901816.1| - 5.6e-67 226.1 4.7 5.6e-67 226.1 3.2 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle OppC_N PF12911.2 gi|307595499|ref|YP_003901816.1| - 4.4 6.7 8.1 0.19 11.1 1.0 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|307595500|ref|YP_003901817.1| - 2.6e-44 150.9 12.6 2.6e-44 150.9 8.7 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4179 PF13786.1 gi|307595500|ref|YP_003901817.1| - 1.4 9.1 4.5 16 5.7 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) BPD_transp_1 PF00528.17 gi|307595501|ref|YP_003901818.1| - 5e-26 91.3 12.5 5e-26 91.3 8.7 2.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component PaREP1 PF05942.6 gi|307595502|ref|YP_003901819.1| - 7.2e-26 90.3 0.9 8.5e-26 90.0 0.6 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family AA_permease_2 PF13520.1 gi|307595503|ref|YP_003901820.1| - 7.1e-33 113.7 57.5 7.1e-33 113.7 39.9 2.6 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|307595503|ref|YP_003901820.1| - 4.7e-22 77.9 57.3 4.7e-22 77.9 39.7 2.3 1 1 1 2 2 2 1 Amino acid permease HTH_11 PF08279.7 gi|307595504|ref|YP_003901821.1| - 2.9e-05 23.6 0.1 7.7e-05 22.2 0.1 1.8 1 0 0 1 1 1 1 HTH domain RP-C PF03428.8 gi|307595504|ref|YP_003901821.1| - 0.033 13.6 0.1 0.21 11.0 0.0 1.9 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_IclR PF09339.5 gi|307595504|ref|YP_003901821.1| - 0.035 13.6 0.0 0.075 12.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|307595504|ref|YP_003901821.1| - 0.047 13.5 0.1 0.1 12.4 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix Abhydrolase_3 PF07859.8 gi|307595505|ref|YP_003901822.1| - 3.8e-75 252.0 0.0 4.8e-75 251.7 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|307595505|ref|YP_003901822.1| - 2e-14 53.2 0.1 5e-14 51.9 0.1 1.5 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|307595505|ref|YP_003901822.1| - 4.1e-11 42.8 0.0 6.8e-11 42.1 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Chlorophyllase2 PF12740.2 gi|307595505|ref|YP_003901822.1| - 1.2e-07 30.8 0.0 1.7e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase enzyme Peptidase_S9 PF00326.16 gi|307595505|ref|YP_003901822.1| - 1.3e-06 27.8 0.0 7.2e-06 25.3 0.0 1.9 1 1 0 1 1 1 1 Prolyl oligopeptidase family DUF2424 PF10340.4 gi|307595505|ref|YP_003901822.1| - 0.0002 20.1 0.0 0.00028 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Thioesterase PF00975.15 gi|307595505|ref|YP_003901822.1| - 0.00031 21.0 0.0 0.00047 20.4 0.0 1.4 1 0 0 1 1 1 1 Thioesterase domain Chlorophyllase PF07224.6 gi|307595505|ref|YP_003901822.1| - 0.00054 18.8 0.0 0.00073 18.4 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase AXE1 PF05448.7 gi|307595505|ref|YP_003901822.1| - 0.024 13.1 0.1 1.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) DUF2974 PF11187.3 gi|307595505|ref|YP_003901822.1| - 0.043 13.1 0.0 0.067 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) FeoA PF04023.9 gi|307595506|ref|YP_003901823.1| - 8.2e-06 25.7 0.1 9.7e-06 25.4 0.1 1.2 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|307595507|ref|YP_003901824.1| - 5.6e-47 158.9 0.1 8.5e-47 158.3 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|307595507|ref|YP_003901824.1| - 1.5e-29 102.1 19.8 6.9e-21 74.1 4.0 3.9 4 0 0 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|307595507|ref|YP_003901824.1| - 8.7e-14 51.4 0.1 1.8e-13 50.4 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|307595507|ref|YP_003901824.1| - 2.5e-07 30.0 0.0 4.3e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|307595507|ref|YP_003901824.1| - 5.7e-07 29.1 0.1 9e-06 25.2 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|307595507|ref|YP_003901824.1| - 0.00021 20.5 0.0 0.00042 19.5 0.0 1.5 1 0 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|307595507|ref|YP_003901824.1| - 0.0012 19.3 0.0 0.0021 18.5 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AAA_17 PF13207.1 gi|307595507|ref|YP_003901824.1| - 0.088 13.6 0.0 0.26 12.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|307595507|ref|YP_003901824.1| - 0.13 12.5 0.1 0.29 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain ALAD PF00490.16 gi|307595509|ref|YP_003901826.1| - 1e-148 494.5 0.0 1.2e-148 494.3 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_1_2 PF00155.16 gi|307595510|ref|YP_003901827.1| - 2.7e-43 148.3 0.0 3e-43 148.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|307595510|ref|YP_003901827.1| - 1.4e-14 53.5 0.0 2e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.12 gi|307595510|ref|YP_003901827.1| - 0.0042 16.1 0.0 0.0069 15.4 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family ThaI PF15514.1 gi|307595510|ref|YP_003901827.1| - 0.1 11.8 0.0 0.24 10.6 0.0 1.6 1 0 0 1 1 1 0 Restriction endonuclease ThaI AAA_10 PF12846.2 gi|307595511|ref|YP_003901828.1| - 2.2e-11 43.7 0.2 5.1e-11 42.5 0.1 1.5 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|307595511|ref|YP_003901828.1| - 9e-10 38.7 0.3 6.8e-09 35.8 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|307595511|ref|YP_003901828.1| - 7e-05 22.9 0.0 0.0064 16.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|307595511|ref|YP_003901828.1| - 0.00016 20.4 0.0 0.00055 18.6 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|307595511|ref|YP_003901828.1| - 0.00036 20.7 0.1 0.047 13.8 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|307595511|ref|YP_003901828.1| - 0.00064 19.2 0.0 0.011 15.2 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family Arch_ATPase PF01637.13 gi|307595511|ref|YP_003901828.1| - 0.0012 18.6 0.3 0.28 10.8 0.0 2.3 2 0 0 2 2 2 1 Archaeal ATPase AAA_19 PF13245.1 gi|307595511|ref|YP_003901828.1| - 0.0019 17.8 0.0 0.0048 16.6 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|307595511|ref|YP_003901828.1| - 0.0024 17.4 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.1 gi|307595511|ref|YP_003901828.1| - 0.0031 17.4 0.9 0.029 14.2 0.0 2.7 3 0 0 3 3 3 1 AAA domain RNA_helicase PF00910.17 gi|307595511|ref|YP_003901828.1| - 0.0039 17.3 0.0 0.0099 16.0 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_17 PF13207.1 gi|307595511|ref|YP_003901828.1| - 0.012 16.4 0.1 0.032 15.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|307595511|ref|YP_003901828.1| - 0.018 14.1 0.0 0.033 13.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.18 gi|307595511|ref|YP_003901828.1| - 0.023 14.6 0.0 0.2 11.6 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase Rad17 PF03215.10 gi|307595511|ref|YP_003901828.1| - 0.03 13.0 0.6 0.08 11.6 0.0 1.8 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_5 PF07728.9 gi|307595511|ref|YP_003901828.1| - 0.036 13.7 0.0 0.084 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|307595511|ref|YP_003901828.1| - 0.037 13.8 0.0 0.087 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|307595511|ref|YP_003901828.1| - 0.038 13.6 0.1 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 NACHT domain Miro PF08477.8 gi|307595511|ref|YP_003901828.1| - 0.049 14.1 0.0 0.13 12.8 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein Mg_chelatase PF01078.16 gi|307595511|ref|YP_003901828.1| - 0.076 12.1 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.20 gi|307595511|ref|YP_003901828.1| - 0.1 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ArgK PF03308.11 gi|307595511|ref|YP_003901828.1| - 0.11 11.2 0.0 0.18 10.5 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_16 PF13191.1 gi|307595511|ref|YP_003901828.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain MTHFR PF02219.12 gi|307595512|ref|YP_003901829.1| - 0.00051 19.2 0.0 0.0014 17.7 0.0 1.7 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase DUF4159 PF13709.1 gi|307595512|ref|YP_003901829.1| - 0.0046 16.1 0.0 0.0066 15.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4159) ParA PF10609.4 gi|307595513|ref|YP_003901830.1| - 6.3e-28 96.4 0.0 1.8e-27 95.0 0.0 1.8 2 0 0 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|307595513|ref|YP_003901830.1| - 2.5e-13 49.8 0.0 4.4e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|307595513|ref|YP_003901830.1| - 0.00011 22.2 0.0 0.00046 20.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|307595513|ref|YP_003901830.1| - 0.00015 20.8 0.7 0.00028 20.0 0.5 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_10 PF12846.2 gi|307595513|ref|YP_003901830.1| - 0.00066 19.2 0.1 0.0013 18.2 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|307595513|ref|YP_003901830.1| - 0.0055 16.1 0.1 0.016 14.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|307595513|ref|YP_003901830.1| - 0.035 13.1 0.0 0.063 12.3 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ ArgK PF03308.11 gi|307595513|ref|YP_003901830.1| - 0.042 12.6 0.5 0.076 11.7 0.1 1.5 2 0 0 2 2 2 0 ArgK protein IstB_IS21 PF01695.12 gi|307595513|ref|YP_003901830.1| - 0.052 12.9 0.2 0.19 11.1 0.1 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_NifH PF00142.13 gi|307595513|ref|YP_003901830.1| - 0.062 12.4 0.1 0.19 10.8 0.1 1.8 2 1 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF258 PF03193.11 gi|307595513|ref|YP_003901830.1| - 0.15 11.2 0.2 0.23 10.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|307595514|ref|YP_003901831.1| - 8.1e-56 188.4 0.1 1.3e-55 187.8 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|307595514|ref|YP_003901831.1| - 1.4e-32 111.7 0.0 5.2e-32 109.9 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|307595514|ref|YP_003901831.1| - 8.4e-24 83.2 0.1 2e-23 82.0 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|307595514|ref|YP_003901831.1| - 2.3e-22 78.6 0.0 5.8e-22 77.3 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|307595514|ref|YP_003901831.1| - 1.5e-15 57.0 0.2 5.4e-15 55.2 0.1 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 Ras PF00071.17 gi|307595514|ref|YP_003901831.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 Ras family Reprolysin_5 PF13688.1 gi|307595515|ref|YP_003901832.1| - 0.026 14.4 2.3 0.067 13.1 0.4 2.4 2 1 1 3 3 3 0 Metallo-peptidase family M12 DUF910 PF06014.6 gi|307595515|ref|YP_003901832.1| - 0.13 12.2 1.2 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF910) Lactamase_B PF00753.22 gi|307595516|ref|YP_003901833.1| - 6.4e-11 42.2 0.6 8.2e-11 41.9 0.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|307595516|ref|YP_003901833.1| - 4.2e-08 32.9 0.0 5.3e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Toxin_6 PF05453.7 gi|307595516|ref|YP_003901833.1| - 0.13 12.5 0.1 0.24 11.6 0.1 1.4 1 0 0 1 1 1 0 BmTXKS1/BmP02 toxin family FaeA PF04703.7 gi|307595518|ref|YP_003901835.1| - 0.054 13.6 0.1 0.1 12.7 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein Rifin_STEVOR PF02009.11 gi|307595518|ref|YP_003901835.1| - 0.14 11.7 3.7 0.14 11.7 2.6 1.2 1 0 0 1 1 1 0 Rifin/stevor family MaoC_dehydratas PF01575.14 gi|307595519|ref|YP_003901836.1| - 3.7e-27 94.1 0.0 4.9e-27 93.7 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|307595519|ref|YP_003901836.1| - 9.2e-11 41.6 0.1 1.5e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|307595519|ref|YP_003901836.1| - 0.00015 22.2 0.0 0.00017 22.0 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|307595519|ref|YP_003901836.1| - 0.00073 19.6 0.1 0.0023 18.0 0.1 1.8 1 1 0 1 1 1 1 Thioesterase superfamily Myosin_tail_1 PF01576.14 gi|307595520|ref|YP_003901837.1| - 1.2e-07 29.9 0.3 1.6e-07 29.5 0.2 1.1 1 0 0 1 1 1 1 Myosin tail Reo_sigmaC PF04582.7 gi|307595520|ref|YP_003901837.1| - 7.6e-07 28.6 3.7 0.00084 18.6 0.2 1.9 1 1 1 2 2 2 2 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|307595520|ref|YP_003901837.1| - 1.7e-05 25.0 0.1 0.082 13.1 0.0 3.0 2 1 1 3 3 3 2 Nucleopolyhedrovirus P10 protein EzrA PF06160.7 gi|307595520|ref|YP_003901837.1| - 1.8e-05 23.1 0.1 2.6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Tropomyosin_1 PF12718.2 gi|307595520|ref|YP_003901837.1| - 4.9e-05 23.2 0.0 8.4e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Tropomyosin like FlaC_arch PF05377.6 gi|307595520|ref|YP_003901837.1| - 6.8e-05 22.6 6.5 0.0041 16.9 0.6 3.5 2 1 2 4 4 3 2 Flagella accessory protein C (FlaC) Tropomyosin PF00261.15 gi|307595520|ref|YP_003901837.1| - 9.8e-05 21.5 0.6 0.00017 20.7 0.4 1.4 1 0 0 1 1 1 1 Tropomyosin XhlA PF10779.4 gi|307595520|ref|YP_003901837.1| - 0.00035 20.4 0.1 0.00077 19.3 0.0 1.6 1 0 0 1 1 1 1 Haemolysin XhlA DUF1664 PF07889.7 gi|307595520|ref|YP_003901837.1| - 0.00042 20.1 1.0 0.0017 18.1 0.1 2.2 2 1 1 3 3 2 1 Protein of unknown function (DUF1664) CENP-F_leu_zip PF10473.4 gi|307595520|ref|YP_003901837.1| - 0.00053 19.8 0.4 0.0032 17.3 0.0 2.0 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BLOC1_2 PF10046.4 gi|307595520|ref|YP_003901837.1| - 0.00091 19.3 0.2 0.07 13.2 0.0 2.4 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_I PF06008.9 gi|307595520|ref|YP_003901837.1| - 0.0011 18.3 0.7 0.56 9.4 0.0 2.3 2 1 1 3 3 2 1 Laminin Domain I Baculo_PEP_C PF04513.7 gi|307595520|ref|YP_003901837.1| - 0.0016 18.3 0.2 0.0055 16.5 0.0 1.9 2 1 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Seryl_tRNA_N PF02403.17 gi|307595520|ref|YP_003901837.1| - 0.0016 18.4 0.1 0.04 13.9 0.0 2.5 2 1 1 3 3 2 1 Seryl-tRNA synthetase N-terminal domain Prefoldin_2 PF01920.15 gi|307595520|ref|YP_003901837.1| - 0.0021 17.8 0.2 0.7 9.6 0.0 3.1 1 1 2 3 3 3 1 Prefoldin subunit DUF2730 PF10805.3 gi|307595520|ref|YP_003901837.1| - 0.0023 17.6 0.5 0.012 15.3 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2730) SNARE PF05739.14 gi|307595520|ref|YP_003901837.1| - 0.0028 17.2 3.3 0.031 13.9 0.0 3.1 2 1 1 3 3 3 1 SNARE domain Transposase_22 PF02994.9 gi|307595520|ref|YP_003901837.1| - 0.0033 16.0 1.2 0.0049 15.4 0.8 1.2 1 0 0 1 1 1 1 L1 transposable element DUF16 PF01519.11 gi|307595520|ref|YP_003901837.1| - 0.0035 17.5 0.1 0.046 13.9 0.0 2.5 1 1 1 2 2 2 1 Protein of unknown function DUF16 Laminin_II PF06009.7 gi|307595520|ref|YP_003901837.1| - 0.0037 17.0 0.3 0.016 14.9 0.1 2.2 2 1 0 2 2 2 1 Laminin Domain II Nsp1_C PF05064.8 gi|307595520|ref|YP_003901837.1| - 0.0044 16.6 0.1 0.042 13.4 0.0 2.0 1 1 1 2 2 2 1 Nsp1-like C-terminal region EMP24_GP25L PF01105.19 gi|307595520|ref|YP_003901837.1| - 0.0051 16.5 0.3 0.032 13.9 0.2 2.1 1 1 0 1 1 1 1 emp24/gp25L/p24 family/GOLD ATG16 PF08614.6 gi|307595520|ref|YP_003901837.1| - 0.0062 16.3 0.2 0.0089 15.8 0.2 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Filament PF00038.16 gi|307595520|ref|YP_003901837.1| - 0.0065 15.9 0.1 0.012 15.0 0.1 1.4 1 0 0 1 1 1 1 Intermediate filament protein RmuC PF02646.11 gi|307595520|ref|YP_003901837.1| - 0.0077 15.1 0.2 0.067 12.0 0.0 2.0 1 1 1 2 2 2 1 RmuC family GAS PF13851.1 gi|307595520|ref|YP_003901837.1| - 0.0089 15.2 0.0 0.016 14.4 0.0 1.4 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding TelA PF05816.6 gi|307595520|ref|YP_003901837.1| - 0.0092 14.7 0.4 0.028 13.1 0.1 1.9 2 1 0 2 2 2 1 Toxic anion resistance protein (TelA) TBPIP PF07106.8 gi|307595520|ref|YP_003901837.1| - 0.011 15.3 0.0 0.024 14.1 0.0 1.6 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Snapin_Pallidin PF14712.1 gi|307595520|ref|YP_003901837.1| - 0.013 15.7 0.1 0.059 13.6 0.0 2.3 2 1 0 2 2 1 0 Snapin/Pallidin DUF4164 PF13747.1 gi|307595520|ref|YP_003901837.1| - 0.016 15.2 4.6 0.36 10.9 1.2 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) Syntaxin-6_N PF09177.6 gi|307595520|ref|YP_003901837.1| - 0.017 15.5 1.3 0.035 14.5 0.1 2.0 2 1 1 3 3 2 0 Syntaxin 6, N-terminal CorA PF01544.13 gi|307595520|ref|YP_003901837.1| - 0.017 14.1 0.7 0.054 12.5 0.3 1.7 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein V_ATPase_I PF01496.14 gi|307595520|ref|YP_003901837.1| - 0.018 12.9 0.0 0.022 12.6 0.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|307595520|ref|YP_003901837.1| - 0.021 14.4 0.0 0.042 13.4 0.0 1.5 1 1 1 2 2 2 0 IncA protein HrpB7 PF09486.5 gi|307595520|ref|YP_003901837.1| - 0.024 14.5 0.5 0.33 10.8 0.1 2.1 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) WEMBL PF05701.6 gi|307595520|ref|YP_003901837.1| - 0.024 13.1 0.4 0.033 12.6 0.3 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Dynamitin PF04912.9 gi|307595520|ref|YP_003901837.1| - 0.024 13.4 0.5 0.27 10.0 0.3 2.2 1 1 0 1 1 1 0 Dynamitin TMF_DNA_bd PF12329.3 gi|307595520|ref|YP_003901837.1| - 0.025 14.3 0.0 0.24 11.2 0.0 2.3 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF3552 PF12072.3 gi|307595520|ref|YP_003901837.1| - 0.026 13.7 0.2 0.039 13.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) KCNQ_channel PF03520.9 gi|307595520|ref|YP_003901837.1| - 0.026 13.8 0.6 1.2 8.4 0.0 2.2 1 1 1 2 2 2 0 KCNQ voltage-gated potassium channel MCPsignal PF00015.16 gi|307595520|ref|YP_003901837.1| - 0.031 13.7 1.3 0.034 13.6 0.3 1.5 2 0 0 2 2 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF677 PF05055.7 gi|307595520|ref|YP_003901837.1| - 0.033 12.8 0.3 0.047 12.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Lectin_N PF03954.9 gi|307595520|ref|YP_003901837.1| - 0.034 13.5 0.1 0.056 12.8 0.1 1.4 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain AAA_13 PF13166.1 gi|307595520|ref|YP_003901837.1| - 0.035 12.5 0.0 0.048 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF948 PF06103.6 gi|307595520|ref|YP_003901837.1| - 0.038 13.8 0.2 2.3 8.1 0.0 2.7 2 1 2 4 4 3 0 Bacterial protein of unknown function (DUF948) DUF3450 PF11932.3 gi|307595520|ref|YP_003901837.1| - 0.04 13.1 0.0 0.063 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Syntaxin PF00804.20 gi|307595520|ref|YP_003901837.1| - 0.044 13.9 0.3 6.6 6.9 0.0 2.4 1 1 1 2 2 2 0 Syntaxin Vac_Fusion PF02346.11 gi|307595520|ref|YP_003901837.1| - 0.051 13.0 0.6 0.3 10.5 0.4 2.3 1 1 1 2 2 2 0 Chordopoxvirus fusion protein LXG PF04740.7 gi|307595520|ref|YP_003901837.1| - 0.054 13.2 0.0 0.13 12.0 0.0 1.6 1 1 0 1 1 1 0 LXG domain of WXG superfamily Allexi_40kDa PF05549.6 gi|307595520|ref|YP_003901837.1| - 0.062 12.5 0.1 0.19 11.0 0.1 1.7 1 1 0 1 1 1 0 Allexivirus 40kDa protein WXG100 PF06013.7 gi|307595520|ref|YP_003901837.1| - 0.073 13.0 0.1 20 5.2 0.0 2.9 2 1 1 3 3 2 0 Proteins of 100 residues with WXG FH2 PF02181.18 gi|307595520|ref|YP_003901837.1| - 0.078 11.8 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain TroA PF01297.12 gi|307595520|ref|YP_003901837.1| - 0.091 11.9 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 Periplasmic solute binding protein family DUF3251 PF11622.3 gi|307595520|ref|YP_003901837.1| - 0.1 12.0 0.1 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3251) FliD_C PF07195.7 gi|307595520|ref|YP_003901837.1| - 0.1 11.8 0.0 0.27 10.5 0.0 1.8 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus B2 PF11473.3 gi|307595520|ref|YP_003901837.1| - 0.1 12.1 0.1 0.81 9.3 0.0 2.3 2 1 1 3 3 2 0 RNA binding protein B2 V-SNARE_C PF12352.3 gi|307595520|ref|YP_003901837.1| - 0.11 12.5 1.1 12 6.0 0.0 2.5 3 0 0 3 3 2 0 Snare region anchored in the vesicle membrane C-terminus Bacillus_HBL PF05791.6 gi|307595520|ref|YP_003901837.1| - 0.13 11.6 0.0 0.4 10.0 0.0 1.7 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) ALIX_LYPXL_bnd PF13949.1 gi|307595520|ref|YP_003901837.1| - 0.14 11.1 0.6 0.37 9.7 0.4 1.7 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV Cast PF10174.4 gi|307595520|ref|YP_003901837.1| - 0.16 10.0 1.0 0.2 9.6 0.7 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone DUF4140 PF13600.1 gi|307595520|ref|YP_003901837.1| - 0.19 12.2 1.7 2.6 8.5 0.1 2.9 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) COG2 PF06148.6 gi|307595520|ref|YP_003901837.1| - 0.26 11.1 3.8 0.85 9.5 1.1 2.5 2 1 0 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 SlyX PF04102.7 gi|307595520|ref|YP_003901837.1| - 0.27 11.6 1.9 9.1 6.7 0.4 3.0 2 1 1 3 3 2 0 SlyX UPF0184 PF03670.8 gi|307595520|ref|YP_003901837.1| - 0.3 11.2 2.1 0.41 10.8 0.1 2.3 3 1 0 3 3 1 0 Uncharacterised protein family (UPF0184) Radical_SAM PF04055.16 gi|307595521|ref|YP_003901838.1| - 5.6e-21 75.4 0.2 8.5e-21 74.8 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|307595521|ref|YP_003901838.1| - 3.6e-06 27.0 0.0 7.8e-06 25.9 0.0 1.6 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|307595521|ref|YP_003901838.1| - 0.02 15.0 0.1 0.13 12.3 0.1 2.0 1 1 1 2 2 2 0 4Fe-4S single cluster domain CRS1_YhbY PF01985.16 gi|307595521|ref|YP_003901838.1| - 0.045 13.7 0.4 4.7 7.2 0.0 2.8 2 1 1 3 3 3 0 CRS1 / YhbY (CRM) domain DUF336 PF03928.9 gi|307595522|ref|YP_003901839.1| - 3.6e-46 156.2 0.1 1.9e-27 95.6 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF336) Peptidase_S55 PF05580.7 gi|307595522|ref|YP_003901839.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 SpoIVB peptidase S55 DAO PF01266.19 gi|307595523|ref|YP_003901840.1| - 1.8e-47 162.0 0.0 2.3e-47 161.6 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|307595523|ref|YP_003901840.1| - 1.5e-08 34.5 0.1 4e-08 33.1 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|307595523|ref|YP_003901840.1| - 6.6e-08 32.8 0.6 0.0022 18.3 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|307595523|ref|YP_003901840.1| - 1.1e-07 31.2 0.0 4.1e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|307595523|ref|YP_003901840.1| - 2.5e-07 30.8 0.0 1.1e-05 25.4 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|307595523|ref|YP_003901840.1| - 2.9e-07 29.7 0.3 0.0002 20.4 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|307595523|ref|YP_003901840.1| - 2.5e-06 27.6 0.0 0.0095 16.0 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|307595523|ref|YP_003901840.1| - 4e-05 22.2 0.8 0.0079 14.7 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|307595523|ref|YP_003901840.1| - 0.00018 20.6 0.2 0.0012 18.0 0.0 2.3 3 0 0 3 3 3 1 Thi4 family Trp_halogenase PF04820.9 gi|307595523|ref|YP_003901840.1| - 0.0004 19.1 0.7 0.25 9.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|307595523|ref|YP_003901840.1| - 0.00043 19.2 0.0 0.0022 16.9 0.0 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|307595523|ref|YP_003901840.1| - 0.0017 17.2 0.9 0.0024 16.7 0.3 1.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|307595523|ref|YP_003901840.1| - 0.0019 18.0 0.5 0.039 13.7 0.1 2.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|307595523|ref|YP_003901840.1| - 0.0039 17.1 0.2 0.0082 16.1 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain CPSase_L_chain PF00289.17 gi|307595523|ref|YP_003901840.1| - 0.0059 16.7 0.1 0.036 14.1 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_oxidored PF12831.2 gi|307595523|ref|YP_003901840.1| - 0.0091 15.1 0.0 1.2 8.1 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Mqo PF06039.10 gi|307595523|ref|YP_003901840.1| - 0.036 12.2 0.3 0.066 11.3 0.0 1.5 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) Amino_oxidase PF01593.19 gi|307595523|ref|YP_003901840.1| - 0.082 11.9 0.0 0.72 8.8 0.0 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase GDI PF00996.13 gi|307595523|ref|YP_003901840.1| - 0.1 10.8 0.0 0.16 10.2 0.0 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor 3HCDH_N PF02737.13 gi|307595523|ref|YP_003901840.1| - 0.11 12.1 0.2 0.28 10.7 0.1 1.7 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Radical_SAM PF04055.16 gi|307595524|ref|YP_003901841.1| - 4.6e-20 72.4 0.1 1.5e-19 70.7 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|307595524|ref|YP_003901841.1| - 5.5e-07 29.6 0.0 1.2e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|307595524|ref|YP_003901841.1| - 1.4e-05 25.2 0.0 2.8e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SCP2 PF02036.12 gi|307595525|ref|YP_003901842.1| - 0.012 15.8 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 SCP-2 sterol transfer family Defensin_big PF14862.1 gi|307595525|ref|YP_003901842.1| - 0.025 14.6 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 Big defensin HTH_27 PF13463.1 gi|307595526|ref|YP_003901843.1| - 0.0005 20.3 0.0 0.00066 19.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|307595526|ref|YP_003901843.1| - 0.037 14.1 0.0 0.05 13.6 0.0 1.2 1 0 0 1 1 1 0 Mrr N-terminal domain BPD_transp_1 PF00528.17 gi|307595527|ref|YP_003901844.1| - 2.3e-18 66.3 49.7 3.8e-13 49.3 15.1 4.2 1 1 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|307595528|ref|YP_003901845.1| - 1e-14 55.0 2.1 2.1e-14 53.9 1.5 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|307595528|ref|YP_003901845.1| - 7.9e-08 32.3 0.9 2e-07 31.0 0.7 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|307595528|ref|YP_003901845.1| - 0.016 14.8 0.5 0.59 9.7 0.1 2.5 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Lactamase_B_2 PF12706.2 gi|307595529|ref|YP_003901846.1| - 3.5e-31 108.2 0.2 4.2e-31 108.0 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|307595529|ref|YP_003901846.1| - 4.1e-14 52.6 1.4 6.4e-14 52.0 1.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|307595529|ref|YP_003901846.1| - 2.4e-06 27.3 0.0 3.6e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF2065 PF09838.4 gi|307595530|ref|YP_003901847.1| - 0.23 11.1 0.0 0.23 11.1 0.0 3.4 2 2 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) DUF2231 PF09990.4 gi|307595530|ref|YP_003901847.1| - 0.59 10.5 9.4 1 9.7 6.5 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2231) CD20 PF04103.10 gi|307595530|ref|YP_003901847.1| - 2.5 8.0 12.6 7.4 6.4 8.9 1.7 1 1 0 1 1 1 0 CD20-like family DUF1218 PF06749.7 gi|307595530|ref|YP_003901847.1| - 8.7 6.8 7.2 1.8 9.0 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1218) Epimerase PF01370.16 gi|307595531|ref|YP_003901848.1| - 2e-17 63.4 0.0 2.8e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|307595531|ref|YP_003901848.1| - 2.9e-08 32.9 0.0 8.6e-08 31.4 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|307595531|ref|YP_003901848.1| - 6.3e-08 31.8 0.0 1.7e-07 30.4 0.0 1.7 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|307595531|ref|YP_003901848.1| - 2.9e-06 27.4 0.0 4.3e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|307595531|ref|YP_003901848.1| - 0.00023 21.2 0.1 0.00072 19.6 0.0 1.8 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|307595531|ref|YP_003901848.1| - 0.00056 19.0 0.0 0.00083 18.4 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|307595531|ref|YP_003901848.1| - 0.0047 16.8 0.0 0.0064 16.4 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_2 PF03446.10 gi|307595531|ref|YP_003901848.1| - 0.045 13.6 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|307595531|ref|YP_003901848.1| - 0.096 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|307595531|ref|YP_003901848.1| - 0.12 11.6 0.0 0.38 9.9 0.0 2.0 2 1 0 2 2 2 0 NmrA-like family MFS_1 PF07690.11 gi|307595532|ref|YP_003901849.1| - 2.4e-39 135.0 73.2 1e-36 126.4 48.8 3.3 2 1 0 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|307595532|ref|YP_003901849.1| - 0.00034 18.8 9.6 0.00034 18.8 6.7 2.5 2 0 0 2 2 2 1 Transmembrane secretion effector FMN_dh PF01070.13 gi|307595534|ref|YP_003901851.1| - 2.8e-31 108.6 0.1 6e-20 71.3 0.0 2.0 1 1 0 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|307595534|ref|YP_003901851.1| - 2.8e-07 29.7 1.0 1.7e-06 27.2 0.3 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.20 gi|307595534|ref|YP_003901851.1| - 0.0015 17.4 4.7 0.0087 14.9 3.3 2.3 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|307595534|ref|YP_003901851.1| - 0.069 12.0 2.5 0.1 11.5 1.5 1.4 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase Zn_Tnp_IS1595 PF12760.2 gi|307595535|ref|YP_003901852.1| - 0.00037 20.2 0.2 0.006 16.3 0.2 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|307595535|ref|YP_003901852.1| - 0.0011 18.5 2.8 0.12 12.0 1.9 2.3 1 1 0 1 1 1 1 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|307595535|ref|YP_003901852.1| - 0.005 16.4 0.1 0.016 14.8 0.1 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|307595535|ref|YP_003901852.1| - 0.01 15.1 0.1 0.019 14.3 0.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding DUF2387 PF09526.5 gi|307595535|ref|YP_003901852.1| - 0.018 14.9 0.1 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) HypA PF01155.14 gi|307595535|ref|YP_003901852.1| - 0.044 13.4 0.6 2.9 7.5 0.0 2.8 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|307595535|ref|YP_003901852.1| - 0.051 13.5 1.0 6.2 6.8 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zf-HYPF PF07503.7 gi|307595535|ref|YP_003901852.1| - 0.065 12.6 0.1 0.065 12.6 0.1 2.0 2 0 0 2 2 2 0 HypF finger Cpn60_TCP1 PF00118.19 gi|307595535|ref|YP_003901852.1| - 0.091 11.3 0.0 0.099 11.2 0.0 1.1 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family Lar_restr_allev PF14354.1 gi|307595535|ref|YP_003901852.1| - 0.15 12.3 0.5 0.29 11.4 0.2 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|307595535|ref|YP_003901852.1| - 3.6 7.3 4.9 20 5.0 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_L2_C PF03947.13 gi|307595536|ref|YP_003901853.1| - 6.3e-38 129.5 0.6 1.1e-37 128.7 0.4 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|307595536|ref|YP_003901853.1| - 5.6e-12 45.4 0.0 1.1e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain tRNA_int_endo PF01974.12 gi|307595537|ref|YP_003901854.1| - 3.5e-09 36.3 0.0 6.1e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain Phage_Mu_Gam PF07352.7 gi|307595538|ref|YP_003901855.1| - 0.057 12.9 0.1 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage Mu Gam like protein Radical_SAM PF04055.16 gi|307595539|ref|YP_003901856.1| - 5.3e-13 49.4 0.1 5.9e-12 46.0 0.0 2.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|307595539|ref|YP_003901856.1| - 1.1e-06 28.8 0.0 1.9e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|307595539|ref|YP_003901856.1| - 4.1e-06 26.8 0.0 7.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rhomboid PF01694.17 gi|307595540|ref|YP_003901857.1| - 6.7e-22 78.0 14.5 6.7e-22 78.0 10.1 1.4 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|307595540|ref|YP_003901857.1| - 0.00023 21.4 1.0 0.00023 21.4 0.7 2.2 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) Romo1 PF10247.4 gi|307595540|ref|YP_003901857.1| - 0.012 15.8 2.6 3.7 7.8 0.1 2.6 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Sdh_cyt PF01127.17 gi|307595540|ref|YP_003901857.1| - 4.4 7.1 14.4 0.95 9.3 0.4 2.5 2 1 0 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PNGaseA PF12222.3 gi|307595541|ref|YP_003901858.1| - 7e-91 305.2 12.6 9.4e-91 304.8 8.8 1.1 1 0 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A PaREP1 PF05942.6 gi|307595544|ref|YP_003901861.1| - 2.8e-11 43.2 0.5 5.8e-11 42.2 0.3 1.5 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|307595544|ref|YP_003901861.1| - 1.6e-05 24.7 1.1 3e-05 23.8 0.7 1.4 1 1 0 1 1 1 1 HEPN domain DUF3562 PF12085.3 gi|307595544|ref|YP_003901861.1| - 0.084 12.7 0.1 0.25 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) DUF72 PF01904.13 gi|307595545|ref|YP_003901862.1| - 1.5e-55 188.4 0.3 1.7e-55 188.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Sugar_tr PF00083.19 gi|307595546|ref|YP_003901863.1| - 2.3e-18 66.0 39.9 7.5e-18 64.3 9.0 2.0 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|307595546|ref|YP_003901863.1| - 1.3e-13 50.4 54.5 1.3e-13 50.4 37.8 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily UbiA PF01040.13 gi|307595547|ref|YP_003901864.1| - 2.7e-33 115.2 30.2 2.7e-33 115.2 20.9 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family UbiD PF01977.11 gi|307595548|ref|YP_003901865.1| - 8.3e-118 393.3 0.0 9.7e-118 393.1 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NAD_binding_2 PF03446.10 gi|307595549|ref|YP_003901866.1| - 1.1e-25 90.4 0.2 1.6e-25 89.8 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|307595549|ref|YP_003901866.1| - 2.8e-11 43.5 0.0 4.7e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|307595549|ref|YP_003901866.1| - 5.6e-07 29.8 0.1 1.2e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|307595549|ref|YP_003901866.1| - 5.6e-05 22.3 0.1 8.5e-05 21.7 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|307595549|ref|YP_003901866.1| - 0.0001 22.2 0.6 0.0025 17.7 0.1 2.6 1 1 1 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.13 gi|307595549|ref|YP_003901866.1| - 0.00013 21.6 0.5 0.00047 19.8 0.1 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|307595549|ref|YP_003901866.1| - 0.0006 19.2 0.8 0.0037 16.6 0.4 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PDH PF02153.12 gi|307595549|ref|YP_003901866.1| - 0.0018 17.2 0.0 0.0029 16.5 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase IlvN PF07991.7 gi|307595549|ref|YP_003901866.1| - 0.0086 15.4 0.1 0.023 14.0 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain Rossmann-like PF10727.4 gi|307595549|ref|YP_003901866.1| - 0.1 12.3 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Rossmann-like domain ApbA PF02558.11 gi|307595549|ref|YP_003901866.1| - 0.11 11.9 0.3 0.19 11.1 0.2 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF61 PF01886.11 gi|307595550|ref|YP_003901867.1| - 0.04 13.7 0.6 39 4.1 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function DUF61 AAA_21 PF13304.1 gi|307595551|ref|YP_003901868.1| - 8.7e-10 39.0 0.0 4e-08 33.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|307595551|ref|YP_003901868.1| - 1.4e-06 27.6 0.0 0.039 12.9 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|307595551|ref|YP_003901868.1| - 0.00018 20.7 0.2 0.37 9.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|307595551|ref|YP_003901868.1| - 0.055 13.8 0.0 0.11 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2813 PF11398.3 gi|307595551|ref|YP_003901868.1| - 0.2 10.7 3.5 0.73 8.8 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) RmlD_sub_bind PF04321.12 gi|307595552|ref|YP_003901869.1| - 2.9e-59 200.3 0.0 3.3e-59 200.1 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|307595552|ref|YP_003901869.1| - 7e-19 68.2 0.0 1.1e-18 67.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|307595552|ref|YP_003901869.1| - 9.4e-11 41.1 0.0 1.3e-09 37.3 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|307595552|ref|YP_003901869.1| - 3.2e-09 36.0 0.0 4.8e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|307595552|ref|YP_003901869.1| - 8e-06 24.7 0.0 1.2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Ub-Mut7C PF14451.1 gi|307595552|ref|YP_003901869.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Mut7-C ubiquitin Arch_ATPase PF01637.13 gi|307595553|ref|YP_003901870.1| - 7e-30 104.4 0.0 1e-29 103.9 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|307595553|ref|YP_003901870.1| - 2.4e-07 30.7 0.0 0.0026 17.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|307595553|ref|YP_003901870.1| - 3.4e-07 30.4 0.1 8.2e-07 29.1 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|307595553|ref|YP_003901870.1| - 3.4e-05 24.0 0.0 0.00016 21.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|307595553|ref|YP_003901870.1| - 0.00093 20.0 0.5 0.1 13.3 0.4 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|307595553|ref|YP_003901870.1| - 0.0092 16.1 0.0 0.077 13.1 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_IclR PF09339.5 gi|307595553|ref|YP_003901870.1| - 0.08 12.5 0.0 1 8.9 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF4099 PF13351.1 gi|307595553|ref|YP_003901870.1| - 0.15 11.9 0.0 0.68 9.8 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4099) Radical_SAM PF04055.16 gi|307595554|ref|YP_003901871.1| - 0.0013 18.9 2.0 0.048 13.8 1.4 2.6 1 1 0 1 1 1 1 Radical SAM superfamily PaREP1 PF05942.6 gi|307595555|ref|YP_003901872.1| - 1.7e-31 108.4 0.3 2.2e-31 108.1 0.2 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family NIR_SIR PF01077.17 gi|307595556|ref|YP_003901873.1| - 2.2e-29 101.8 0.0 1.9e-19 69.5 0.0 2.6 2 1 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|307595556|ref|YP_003901873.1| - 9.9e-15 53.9 0.0 5.5e-06 25.9 0.0 2.7 2 0 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain EamA PF00892.15 gi|307595557|ref|YP_003901874.1| - 2.6e-24 85.6 36.0 1.1e-14 54.5 10.2 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|307595557|ref|YP_003901874.1| - 0.0016 18.5 10.5 0.0016 18.5 7.3 3.6 2 2 1 3 3 3 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|307595557|ref|YP_003901874.1| - 7 6.4 10.6 5.2 6.9 3.1 2.7 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 Fer4 PF00037.22 gi|307595558|ref|YP_003901875.1| - 1.9e-10 39.8 13.5 2.4e-08 33.2 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|307595558|ref|YP_003901875.1| - 1e-09 38.6 7.1 2e-09 37.6 4.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307595558|ref|YP_003901875.1| - 4.3e-08 33.2 8.0 8.1e-08 32.4 5.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307595558|ref|YP_003901875.1| - 4.8e-08 32.7 6.8 6.8e-08 32.2 4.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307595558|ref|YP_003901875.1| - 7.5e-08 31.9 14.9 1.1e-07 31.4 2.1 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307595558|ref|YP_003901875.1| - 2.9e-07 30.1 7.2 2.9e-07 30.1 5.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307595558|ref|YP_003901875.1| - 5e-07 30.3 3.8 0.0006 20.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|307595558|ref|YP_003901875.1| - 5.9e-07 29.0 3.8 5.9e-07 29.0 2.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|307595558|ref|YP_003901875.1| - 5.9e-06 26.7 9.3 3.1e-05 24.4 6.5 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|307595558|ref|YP_003901875.1| - 6.4e-06 26.4 8.0 0.0016 18.7 0.6 2.4 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|307595558|ref|YP_003901875.1| - 1.3e-05 25.1 17.6 0.00066 19.6 5.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307595558|ref|YP_003901875.1| - 3.5e-05 23.7 3.7 3.5e-05 23.7 2.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|307595558|ref|YP_003901875.1| - 4.7e-05 23.6 17.0 0.00073 19.9 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|307595558|ref|YP_003901875.1| - 8.9e-05 22.8 0.1 8.9e-05 22.8 0.1 2.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|307595558|ref|YP_003901875.1| - 0.00084 19.1 2.9 0.0015 18.4 2.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307595558|ref|YP_003901875.1| - 0.045 14.1 10.8 0.85 10.0 7.5 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain NinG PF05766.7 gi|307595558|ref|YP_003901875.1| - 0.063 13.0 0.1 0.15 11.7 0.1 1.6 2 0 0 2 2 2 0 Bacteriophage Lambda NinG protein Nitrate_red_del PF02613.10 gi|307595559|ref|YP_003901876.1| - 3.2e-16 59.4 0.0 3.5e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit Fer4_11 PF13247.1 gi|307595560|ref|YP_003901877.1| - 1.1e-39 134.2 6.0 1.1e-39 134.2 4.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Nitr_red_bet_C PF14711.1 gi|307595560|ref|YP_003901877.1| - 1.1e-25 88.9 0.0 1.8e-25 88.2 0.0 1.4 1 0 0 1 1 1 1 Respiratory nitrate reductase beta C-terminal Fer4_7 PF12838.2 gi|307595560|ref|YP_003901877.1| - 2.7e-09 37.2 18.3 4.3e-05 23.8 5.7 3.3 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307595560|ref|YP_003901877.1| - 2.7e-08 33.2 20.0 0.0078 16.0 2.1 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307595560|ref|YP_003901877.1| - 1.7e-07 30.8 18.1 1.8e-05 24.4 2.6 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307595560|ref|YP_003901877.1| - 6.6e-06 26.2 17.7 0.34 11.2 0.4 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307595560|ref|YP_003901877.1| - 1.2e-05 24.9 24.8 0.0055 16.5 1.6 4.3 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4 PF00037.22 gi|307595560|ref|YP_003901877.1| - 0.00018 20.9 20.9 0.026 14.1 1.6 4.7 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|307595560|ref|YP_003901877.1| - 0.015 15.5 26.1 0.16 12.3 0.5 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|307595560|ref|YP_003901877.1| - 0.028 14.7 17.7 0.31 11.4 0.1 3.9 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307595560|ref|YP_003901877.1| - 0.066 13.0 23.1 0.045 13.6 1.6 3.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307595560|ref|YP_003901877.1| - 0.13 12.6 0.2 0.13 12.6 0.1 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|307595560|ref|YP_003901877.1| - 0.76 10.3 14.2 1.9 9.1 0.4 3.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|307595560|ref|YP_003901877.1| - 4.3 7.4 17.6 0.46 10.5 0.1 3.3 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307595560|ref|YP_003901877.1| - 9.6 7.0 19.7 28 5.5 0.2 3.6 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.17 gi|307595561|ref|YP_003901878.1| - 4.2e-152 506.8 0.0 5.1e-152 506.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|307595561|ref|YP_003901878.1| - 8.4e-23 80.2 0.6 1.9e-22 79.1 0.4 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Nitr_red_alph_N PF14710.1 gi|307595561|ref|YP_003901878.1| - 4.3e-09 36.4 4.3 1.1e-08 35.1 3.0 1.7 1 0 0 1 1 1 1 Respiratory nitrate reductase alpha N-terminal Molybdop_Fe4S4 PF04879.11 gi|307595561|ref|YP_003901878.1| - 0.00065 19.4 0.1 0.0028 17.4 0.1 2.1 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Nitrate_red_gam PF02665.9 gi|307595562|ref|YP_003901879.1| - 1.6e-79 266.3 17.6 1.9e-79 266.1 12.2 1.0 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Renin_r PF07850.9 gi|307595562|ref|YP_003901879.1| - 4.7 7.6 7.6 0.32 11.3 0.6 2.2 2 0 0 2 2 2 0 Renin receptor-like protein MFS_1 PF07690.11 gi|307595563|ref|YP_003901880.1| - 4.5e-33 114.4 72.7 1.3e-18 66.8 28.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307595563|ref|YP_003901880.1| - 0.00017 20.3 20.4 0.00017 20.3 14.2 2.5 2 1 0 2 2 2 1 Sugar (and other) transporter P5-ATPase PF12409.3 gi|307595563|ref|YP_003901880.1| - 0.12 12.2 1.4 0.35 10.7 1.0 1.8 1 0 0 1 1 1 0 P5-type ATPase cation transporter Hemerythrin PF01814.18 gi|307595564|ref|YP_003901881.1| - 7e-18 65.0 0.2 9.4e-18 64.6 0.2 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain DUF2250 PF10007.4 gi|307595565|ref|YP_003901882.1| - 3.1e-34 116.7 0.4 3.6e-34 116.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|307595565|ref|YP_003901882.1| - 1.9e-05 24.2 0.1 3e-05 23.6 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|307595565|ref|YP_003901882.1| - 0.00038 20.0 0.0 0.0011 18.5 0.0 1.8 1 1 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|307595565|ref|YP_003901882.1| - 0.00058 19.9 0.2 0.00091 19.2 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.1 gi|307595565|ref|YP_003901882.1| - 0.00067 19.2 0.0 0.00076 19.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR PF01047.17 gi|307595565|ref|YP_003901882.1| - 0.013 15.1 0.1 0.37 10.5 0.1 2.2 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.1 gi|307595565|ref|YP_003901882.1| - 0.038 13.3 0.5 0.13 11.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PAPS_reduct PF01507.14 gi|307595565|ref|YP_003901882.1| - 0.038 13.8 0.0 0.042 13.6 0.0 1.1 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family HTH_20 PF12840.2 gi|307595565|ref|YP_003901882.1| - 0.054 13.3 0.1 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain PaREP1 PF05942.6 gi|307595566|ref|YP_003901883.1| - 3.2e-29 101.1 1.6 3.9e-29 100.8 1.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family UPF0066 PF01980.11 gi|307595567|ref|YP_003901884.1| - 9.4e-34 115.9 0.0 1.4e-33 115.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 DUF3809 PF12723.2 gi|307595568|ref|YP_003901885.1| - 0.019 14.8 0.3 2.9 7.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3809) HTH_10 PF04967.7 gi|307595569|ref|YP_003901886.1| - 6.4e-17 60.8 0.1 1.4e-16 59.8 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|307595569|ref|YP_003901886.1| - 6.2e-08 31.8 1.6 6.4e-08 31.7 0.1 1.7 2 0 0 2 2 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|307595569|ref|YP_003901886.1| - 4.8e-05 22.9 0.0 0.026 14.1 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|307595569|ref|YP_003901886.1| - 0.00025 20.3 0.2 0.00079 18.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|307595569|ref|YP_003901886.1| - 0.00052 19.5 0.0 0.0017 17.8 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|307595569|ref|YP_003901886.1| - 0.00059 19.5 0.3 0.096 12.5 0.0 3.0 2 1 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|307595569|ref|YP_003901886.1| - 0.0018 17.9 0.1 0.0037 16.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_26 PF13443.1 gi|307595569|ref|YP_003901886.1| - 0.0024 18.0 0.0 0.0052 16.9 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Mga PF08280.6 gi|307595569|ref|YP_003901886.1| - 0.0035 17.0 0.4 0.01 15.5 0.3 1.9 1 1 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.1 gi|307595569|ref|YP_003901886.1| - 0.0063 16.1 0.0 0.018 14.6 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|307595569|ref|YP_003901886.1| - 0.0081 15.9 0.2 0.11 12.3 0.0 2.6 3 0 0 3 3 2 1 Crp-like helix-turn-helix domain Mga PF05043.8 gi|307595569|ref|YP_003901886.1| - 0.012 15.8 0.0 0.033 14.4 0.0 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain Sigma70_r3 PF04539.11 gi|307595569|ref|YP_003901886.1| - 0.013 15.3 0.0 0.036 13.9 0.0 1.7 2 0 0 2 2 1 0 Sigma-70 region 3 Sigma70_r4_2 PF08281.7 gi|307595569|ref|YP_003901886.1| - 0.017 14.5 0.4 0.051 13.0 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|307595569|ref|YP_003901886.1| - 0.033 14.2 0.0 0.088 12.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|307595569|ref|YP_003901886.1| - 0.039 14.2 0.0 0.092 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain LacI PF00356.16 gi|307595569|ref|YP_003901886.1| - 0.043 13.4 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_AraC PF00165.18 gi|307595569|ref|YP_003901886.1| - 0.043 13.6 0.0 0.093 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_3 PF01381.17 gi|307595569|ref|YP_003901886.1| - 0.046 13.5 0.1 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix Fe_dep_repress PF01325.14 gi|307595569|ref|YP_003901886.1| - 0.054 13.4 0.0 0.26 11.2 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|307595569|ref|YP_003901886.1| - 0.057 13.1 0.1 0.51 10.0 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family IF2_N PF04760.10 gi|307595569|ref|YP_003901886.1| - 0.061 12.9 0.2 0.72 9.5 0.1 2.6 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_11 PF08279.7 gi|307595569|ref|YP_003901886.1| - 0.089 12.4 0.1 0.57 9.8 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.1 gi|307595569|ref|YP_003901886.1| - 0.11 12.0 0.0 0.36 10.3 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF488 PF04343.8 gi|307595570|ref|YP_003901887.1| - 2.7e-30 105.2 0.2 3.1e-30 105.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 COX1 PF00115.15 gi|307595571|ref|YP_003901888.1| - 2e-20 72.8 53.5 2e-20 72.8 37.1 2.5 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I PaREP1 PF05942.6 gi|307595572|ref|YP_003901889.1| - 2.9e-21 75.4 0.5 3.9e-21 75.0 0.3 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family TPR_20 PF14561.1 gi|307595572|ref|YP_003901889.1| - 0.63 10.1 3.5 0.22 11.6 0.6 1.5 2 0 0 2 2 2 0 Tetratricopeptide repeat POR_N PF01855.14 gi|307595574|ref|YP_003901891.1| - 3.4e-61 206.7 0.0 5.1e-61 206.1 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|307595574|ref|YP_003901891.1| - 9.8e-33 113.4 0.0 2.9e-32 111.9 0.0 1.8 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|307595574|ref|YP_003901891.1| - 2.1e-06 27.3 0.0 9.1e-06 25.2 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|307595574|ref|YP_003901891.1| - 4.3e-06 26.6 0.0 9.9e-06 25.4 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain CW_binding_2 PF04122.7 gi|307595574|ref|YP_003901891.1| - 0.18 12.0 1.6 4 7.7 0.0 3.2 3 1 1 4 4 4 0 Putative cell wall binding repeat 2 TPP_enzyme_C PF02775.16 gi|307595575|ref|YP_003901892.1| - 2.7e-28 98.4 0.2 5e-28 97.6 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|307595575|ref|YP_003901892.1| - 8.6e-11 41.6 0.4 4.7e-10 39.2 0.2 2.0 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Lipase_GDSL_2 PF13472.1 gi|307595575|ref|YP_003901892.1| - 0.057 13.5 0.0 0.2 11.7 0.0 1.8 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family KaiC PF06745.8 gi|307595576|ref|YP_003901893.1| - 1.3e-63 214.1 0.1 1.4e-63 214.0 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|307595576|ref|YP_003901893.1| - 7.2e-09 35.3 0.0 1.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|307595576|ref|YP_003901893.1| - 9.8e-05 21.5 0.0 0.00018 20.7 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|307595576|ref|YP_003901893.1| - 0.00032 19.1 1.0 0.0012 17.3 0.7 1.7 1 1 0 1 1 1 1 GvpD gas vesicle protein ATP-synt_ab PF00006.20 gi|307595576|ref|YP_003901893.1| - 0.0016 17.9 0.0 0.0023 17.4 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain DEAD PF00270.24 gi|307595576|ref|YP_003901893.1| - 0.0048 16.4 0.0 0.0066 15.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|307595576|ref|YP_003901893.1| - 0.021 14.8 0.1 0.063 13.2 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.10 gi|307595576|ref|YP_003901893.1| - 0.024 14.4 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|307595576|ref|YP_003901893.1| - 0.042 12.8 0.0 0.055 12.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|307595576|ref|YP_003901893.1| - 0.071 13.2 0.4 0.76 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|307595576|ref|YP_003901893.1| - 0.074 11.9 0.2 0.12 11.2 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PAXNEB PF05625.6 gi|307595576|ref|YP_003901893.1| - 0.075 11.8 0.5 0.12 11.1 0.3 1.2 1 0 0 1 1 1 0 PAXNEB protein ADH_N PF08240.7 gi|307595577|ref|YP_003901894.1| - 4.7e-31 106.7 0.0 8.5e-31 105.9 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|307595577|ref|YP_003901894.1| - 2.2e-25 88.6 0.0 3.1e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|307595577|ref|YP_003901894.1| - 9.2e-07 29.8 0.0 1.5e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ThiF PF00899.16 gi|307595577|ref|YP_003901894.1| - 4e-06 26.7 0.2 0.00086 19.1 0.1 2.5 1 1 1 2 2 2 1 ThiF family ADH_N_assoc PF13823.1 gi|307595577|ref|YP_003901894.1| - 7.5e-05 22.2 1.1 0.00016 21.2 0.7 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Shikimate_DH PF01488.15 gi|307595577|ref|YP_003901894.1| - 0.00026 21.1 0.1 0.00046 20.3 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|307595577|ref|YP_003901894.1| - 0.00043 20.2 0.1 0.00073 19.5 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|307595577|ref|YP_003901894.1| - 0.0021 17.0 0.0 0.0031 16.5 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_3 PF03447.11 gi|307595577|ref|YP_003901894.1| - 0.0083 16.5 0.1 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|307595577|ref|YP_003901894.1| - 0.013 14.6 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Semialdhyde_dh PF01118.19 gi|307595577|ref|YP_003901894.1| - 0.039 14.2 0.0 0.06 13.6 0.0 1.2 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|307595577|ref|YP_003901894.1| - 0.046 13.9 0.1 0.081 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Methyltransf_18 PF12847.2 gi|307595577|ref|YP_003901894.1| - 0.049 14.2 0.2 0.31 11.6 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Aconitase_2_N PF06434.8 gi|307595577|ref|YP_003901894.1| - 0.16 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Aconitate hydratase 2 N-terminus MR_MLE_C PF13378.1 gi|307595578|ref|YP_003901895.1| - 4.1e-19 68.5 0.0 6.9e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|307595578|ref|YP_003901895.1| - 1.1e-12 47.9 0.0 1.9e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|307595578|ref|YP_003901895.1| - 3.2e-12 46.8 0.0 5.4e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Lactamase_B PF00753.22 gi|307595579|ref|YP_003901896.1| - 0.048 13.3 0.1 4.9 6.7 0.0 2.2 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily ADH_N PF08240.7 gi|307595580|ref|YP_003901897.1| - 7.3e-26 90.0 0.2 1.3e-25 89.2 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|307595580|ref|YP_003901897.1| - 1.8e-22 79.2 0.0 3.6e-22 78.2 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|307595580|ref|YP_003901897.1| - 1.1e-07 32.8 0.0 1.8e-07 32.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DUF4377 PF14302.1 gi|307595580|ref|YP_003901897.1| - 0.018 14.9 0.2 0.035 14.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4377) TrkA_N PF02254.13 gi|307595580|ref|YP_003901897.1| - 0.022 14.7 0.0 0.052 13.5 0.0 1.7 1 1 0 1 1 1 0 TrkA-N domain PALP PF00291.20 gi|307595580|ref|YP_003901897.1| - 0.031 13.5 0.0 0.043 13.0 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Sugar_tr PF00083.19 gi|307595581|ref|YP_003901898.1| - 1.1e-36 126.4 35.8 1.3e-36 126.1 24.8 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|307595581|ref|YP_003901898.1| - 6e-29 100.8 49.3 6e-29 100.8 34.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|307595581|ref|YP_003901898.1| - 3.6e-12 45.4 31.4 1.9e-07 29.8 9.4 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein DUF1430 PF07242.6 gi|307595581|ref|YP_003901898.1| - 0.26 11.3 0.1 0.26 11.3 0.0 3.7 5 0 0 5 5 5 0 Protein of unknown function (DUF1430) HTH_10 PF04967.7 gi|307595582|ref|YP_003901899.1| - 1.9e-17 62.5 0.0 5e-17 61.2 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_22 PF13309.1 gi|307595582|ref|YP_003901899.1| - 0.00036 20.2 0.0 0.0011 18.6 0.0 1.9 1 1 1 2 2 2 1 HTH domain HTH_11 PF08279.7 gi|307595582|ref|YP_003901899.1| - 0.0016 18.0 0.2 0.0095 15.5 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.6 gi|307595582|ref|YP_003901899.1| - 0.002 17.8 0.0 0.004 16.8 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_3 PF01381.17 gi|307595582|ref|YP_003901899.1| - 0.0032 17.2 0.1 0.0095 15.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_5 PF01022.15 gi|307595582|ref|YP_003901899.1| - 0.0056 16.3 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|307595582|ref|YP_003901899.1| - 0.0066 15.8 1.8 0.017 14.5 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Mga PF05043.8 gi|307595582|ref|YP_003901899.1| - 0.0072 16.5 0.4 0.017 15.4 0.3 1.7 1 1 0 1 1 1 1 Mga helix-turn-helix domain NUMOD1 PF07453.8 gi|307595582|ref|YP_003901899.1| - 0.012 15.4 0.1 0.067 13.0 0.0 2.4 2 0 0 2 2 1 0 NUMOD1 domain HTH_17 PF12728.2 gi|307595582|ref|YP_003901899.1| - 0.024 14.9 0.1 0.23 11.7 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|307595582|ref|YP_003901899.1| - 0.027 14.0 0.0 0.083 12.4 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain PCI PF01399.22 gi|307595582|ref|YP_003901899.1| - 0.029 14.7 0.1 0.098 12.9 0.1 1.8 2 0 0 2 2 2 0 PCI domain HTH_23 PF13384.1 gi|307595582|ref|YP_003901899.1| - 0.034 13.7 0.0 0.076 12.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Phage_AlpA PF05930.7 gi|307595582|ref|YP_003901899.1| - 0.044 13.4 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Prophage CP4-57 regulatory protein (AlpA) MerR_1 PF13411.1 gi|307595582|ref|YP_003901899.1| - 0.056 13.2 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_Crp_2 PF13545.1 gi|307595582|ref|YP_003901899.1| - 0.096 12.4 0.0 11 5.8 0.0 3.0 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|307595582|ref|YP_003901899.1| - 0.11 12.1 0.1 0.28 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|307595582|ref|YP_003901899.1| - 0.12 11.5 0.0 0.26 10.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_26 PF13443.1 gi|307595582|ref|YP_003901899.1| - 0.13 12.4 0.1 0.32 11.2 0.1 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.2 gi|307595582|ref|YP_003901899.1| - 0.15 11.7 0.0 0.45 10.2 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_AsnC-type PF13404.1 gi|307595582|ref|YP_003901899.1| - 0.16 11.5 0.6 0.42 10.1 0.0 2.0 3 0 0 3 3 2 0 AsnC-type helix-turn-helix domain NAD_binding_5 PF07994.7 gi|307595583|ref|YP_003901900.1| - 3.1e-44 151.6 0.0 1.2e-43 149.7 0.0 1.7 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|307595583|ref|YP_003901900.1| - 2.2e-21 75.7 0.0 3.6e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Corona_S2 PF01601.11 gi|307595583|ref|YP_003901900.1| - 0.1 10.6 0.0 0.14 10.1 0.0 1.2 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein DUF3185 PF11381.3 gi|307595584|ref|YP_003901901.1| - 0.00018 21.2 19.4 0.00023 20.8 2.2 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF3185) Tetraspannin PF00335.15 gi|307595584|ref|YP_003901901.1| - 0.012 14.8 3.3 1.1 8.4 0.2 2.1 2 0 0 2 2 2 0 Tetraspanin family CRPA PF05745.6 gi|307595584|ref|YP_003901901.1| - 0.014 15.1 3.9 0.04 13.7 0.1 2.3 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF4097 PF13349.1 gi|307595584|ref|YP_003901901.1| - 0.41 10.1 20.9 2.7 7.5 5.0 3.7 2 1 0 3 3 3 0 Domain of unknown function (DUF4097) SHR3_chaperone PF08229.6 gi|307595584|ref|YP_003901901.1| - 0.43 9.4 5.1 0.2 10.6 1.1 1.9 2 0 0 2 2 2 0 ER membrane protein SH3 DUF2976 PF11190.3 gi|307595584|ref|YP_003901901.1| - 0.44 10.0 3.8 1.4 8.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) DUF3040 PF11239.3 gi|307595584|ref|YP_003901901.1| - 1 9.4 10.1 2.6 8.1 0.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) DUF3068 PF11271.3 gi|307595584|ref|YP_003901901.1| - 1.8 7.5 6.0 6.4 5.7 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3068) DUF872 PF05915.7 gi|307595584|ref|YP_003901901.1| - 7.9 6.3 10.6 12 5.7 2.2 2.4 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Thymidylate_kin PF02223.12 gi|307595585|ref|YP_003901902.1| - 3.1e-46 157.1 0.0 3.5e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|307595585|ref|YP_003901902.1| - 2e-05 24.8 0.0 0.0002 21.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|307595585|ref|YP_003901902.1| - 0.00034 20.3 0.0 0.00065 19.4 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|307595585|ref|YP_003901902.1| - 0.00063 20.5 0.2 0.003 18.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|307595585|ref|YP_003901902.1| - 0.0012 17.6 0.0 0.0015 17.3 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_30 PF13604.1 gi|307595585|ref|YP_003901902.1| - 0.0016 18.0 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|307595585|ref|YP_003901902.1| - 0.0031 17.2 0.1 0.034 13.8 0.0 2.1 2 0 0 2 2 2 1 NTPase AAA_28 PF13521.1 gi|307595585|ref|YP_003901902.1| - 0.0035 17.3 0.0 0.0044 16.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|307595585|ref|YP_003901902.1| - 0.017 15.0 0.0 0.078 12.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|307595585|ref|YP_003901902.1| - 0.061 12.9 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_16 PF13191.1 gi|307595585|ref|YP_003901902.1| - 0.067 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|307595585|ref|YP_003901902.1| - 0.077 13.2 0.0 0.092 13.0 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_22 PF13401.1 gi|307595585|ref|YP_003901902.1| - 0.079 13.1 0.0 0.089 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain PPK2 PF03976.9 gi|307595585|ref|YP_003901902.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) MoaC PF01967.16 gi|307595586|ref|YP_003901903.1| - 2.6e-56 189.0 2.0 1.8e-31 108.5 0.3 2.1 2 0 0 2 2 2 2 MoaC family NTP_transferase PF00483.18 gi|307595587|ref|YP_003901904.1| - 1.8e-35 122.4 0.0 2.1e-35 122.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|307595587|ref|YP_003901904.1| - 6.8e-14 52.2 0.0 1.8e-13 50.8 0.0 1.5 1 1 0 2 2 2 1 MobA-like NTP transferase domain IspD PF01128.14 gi|307595587|ref|YP_003901904.1| - 2.1e-05 24.1 0.0 4.5e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.1 gi|307595587|ref|YP_003901904.1| - 0.0047 16.4 0.0 0.0086 15.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4224) CTP_transf_3 PF02348.14 gi|307595587|ref|YP_003901904.1| - 0.13 11.8 0.0 1.3 8.6 0.0 2.2 1 1 0 2 2 2 0 Cytidylyltransferase DHBP_synthase PF00926.14 gi|307595588|ref|YP_003901905.1| - 2.1e-53 180.4 0.0 2.4e-53 180.2 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Cren7 PF11520.3 gi|307595589|ref|YP_003901906.1| - 8.3e-17 60.5 1.5 1e-16 60.2 1.1 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 Radical_SAM PF04055.16 gi|307595591|ref|YP_003901908.1| - 2.5e-13 50.5 0.0 4.7e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|307595591|ref|YP_003901908.1| - 2.3e-06 27.7 0.0 4.2e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|307595591|ref|YP_003901908.1| - 8.5e-06 25.7 0.0 1.6e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1512 PF07431.7 gi|307595592|ref|YP_003901909.1| - 4.6e-108 361.1 0.4 5.3e-108 360.9 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) HSCB_C PF07743.8 gi|307595592|ref|YP_003901909.1| - 0.16 12.4 0.0 1.8 9.1 0.0 2.2 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain EzrA PF06160.7 gi|307595593|ref|YP_003901910.1| - 0.024 12.8 0.3 0.029 12.5 0.2 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA SP_C-Propep PF08999.5 gi|307595593|ref|YP_003901910.1| - 0.059 12.8 0.4 0.11 12.0 0.2 1.5 1 1 0 1 1 1 0 Surfactant protein C, N terminal propeptide FeoB_C PF07664.7 gi|307595593|ref|YP_003901910.1| - 0.084 12.3 0.9 0.12 11.8 0.6 1.2 1 0 0 1 1 1 0 Ferrous iron transport protein B C terminus tRNA-synt_2 PF00152.15 gi|307595594|ref|YP_003901911.1| - 1.2e-80 270.7 0.0 1.8e-80 270.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|307595594|ref|YP_003901911.1| - 2.5e-12 46.4 0.1 4.9e-12 45.5 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|307595594|ref|YP_003901911.1| - 0.0033 16.6 0.2 0.048 12.8 0.0 2.6 2 1 0 2 2 2 1 tRNA synthetases class II core domain (F) BOF PF04076.8 gi|307595594|ref|YP_003901911.1| - 0.026 14.3 0.1 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial OB fold (BOF) protein AAA_18 PF13238.1 gi|307595595|ref|YP_003901912.1| - 3.3e-15 56.5 0.0 6.2e-15 55.6 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|307595595|ref|YP_003901912.1| - 8.4e-10 39.5 0.0 1.1e-09 39.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|307595595|ref|YP_003901912.1| - 1e-05 25.4 0.0 2.3e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 Shikimate kinase AAA_24 PF13479.1 gi|307595595|ref|YP_003901912.1| - 0.00035 20.2 0.3 0.00061 19.4 0.1 1.5 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|307595595|ref|YP_003901912.1| - 0.00076 19.3 0.0 0.0017 18.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|307595595|ref|YP_003901912.1| - 0.0015 18.2 0.1 0.003 17.2 0.0 1.7 2 0 0 2 2 2 1 NTPase KTI12 PF08433.5 gi|307595595|ref|YP_003901912.1| - 0.0019 17.4 0.1 0.0046 16.2 0.0 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_5 PF07728.9 gi|307595595|ref|YP_003901912.1| - 0.0065 16.1 0.0 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|307595595|ref|YP_003901912.1| - 0.007 16.0 0.2 0.019 14.6 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|307595595|ref|YP_003901912.1| - 0.0074 16.4 0.0 0.013 15.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307595595|ref|YP_003901912.1| - 0.0089 16.1 0.0 0.056 13.5 0.0 1.9 1 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|307595595|ref|YP_003901912.1| - 0.015 15.2 0.2 0.032 14.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|307595595|ref|YP_003901912.1| - 0.06 12.8 0.0 0.11 12.0 0.0 1.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|307595595|ref|YP_003901912.1| - 0.07 12.5 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|307595595|ref|YP_003901912.1| - 0.088 12.2 0.1 0.35 10.2 0.0 2.0 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Rad17 PF03215.10 gi|307595595|ref|YP_003901912.1| - 0.096 11.3 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|307595595|ref|YP_003901912.1| - 0.12 12.3 0.6 0.21 11.5 0.4 1.8 1 1 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.4 gi|307595595|ref|YP_003901912.1| - 0.15 11.0 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CitMHS PF03600.11 gi|307595597|ref|YP_003901914.1| - 1.4e-39 135.6 25.4 3.2e-34 118.0 13.4 2.0 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|307595597|ref|YP_003901914.1| - 7.6e-17 61.3 20.2 1.1e-16 60.8 14.0 1.3 1 1 0 1 1 1 1 Arsenical pump membrane protein DUF3397 PF11877.3 gi|307595597|ref|YP_003901914.1| - 0.0015 18.5 0.1 0.0015 18.5 0.1 3.9 3 1 1 4 4 4 1 Protein of unknown function (DUF3397) CobS PF02654.10 gi|307595598|ref|YP_003901915.1| - 3.4e-35 121.7 17.3 4e-35 121.4 12.0 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Phosphorylase PF00343.15 gi|307595599|ref|YP_003901916.1| - 2.1e-11 42.4 0.0 5.3e-10 37.8 0.0 2.4 2 1 1 3 3 3 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.15 gi|307595599|ref|YP_003901916.1| - 3e-07 30.0 0.0 9.5e-07 28.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307595599|ref|YP_003901916.1| - 3.4e-05 24.0 0.0 0.00011 22.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 zf-C2H2_4 PF13894.1 gi|307595600|ref|YP_003901917.1| - 4e-07 29.9 2.7 0.012 15.8 0.1 2.6 1 1 0 2 2 2 2 C2H2-type zinc finger zf-C2H2_6 PF13912.1 gi|307595600|ref|YP_003901917.1| - 3.6e-06 26.6 4.0 0.00094 19.0 0.3 2.5 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|307595600|ref|YP_003901917.1| - 0.0001 22.3 9.1 0.00088 19.4 0.4 2.7 3 0 0 3 3 2 2 Zinc finger, C2H2 type zf-Di19 PF05605.7 gi|307595600|ref|YP_003901917.1| - 0.0007 19.6 1.4 0.00094 19.2 1.0 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_2 PF12756.2 gi|307595600|ref|YP_003901917.1| - 0.0013 18.8 1.1 0.18 11.9 0.2 2.1 1 1 1 2 2 2 1 C2H2 type zinc-finger (2 copies) zf-C2HC_2 PF13913.1 gi|307595600|ref|YP_003901917.1| - 0.0029 17.2 2.7 0.091 12.4 0.1 2.5 2 0 0 2 2 2 1 zinc-finger of a C2HC-type Rad50_zn_hook PF04423.9 gi|307595600|ref|YP_003901917.1| - 0.014 14.8 7.4 0.66 9.4 0.4 2.5 1 1 1 2 2 2 0 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.7 gi|307595600|ref|YP_003901917.1| - 0.022 14.0 1.2 0.29 10.5 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C2H2_jaz PF12171.3 gi|307595600|ref|YP_003901917.1| - 0.03 14.4 1.7 0.57 10.3 0.1 2.6 2 1 0 2 2 2 0 Zinc-finger double-stranded RNA-binding Rubredoxin PF00301.15 gi|307595600|ref|YP_003901917.1| - 0.042 13.7 1.0 0.11 12.3 0.7 1.7 1 1 0 1 1 1 0 Rubredoxin zf-ISL3 PF14690.1 gi|307595600|ref|YP_003901917.1| - 0.055 13.5 0.6 0.58 10.2 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HNH PF01844.18 gi|307595600|ref|YP_003901917.1| - 0.066 13.0 2.2 2.2 8.2 0.2 2.5 2 1 0 2 2 2 0 HNH endonuclease DNA_ligase_ZBD PF03119.11 gi|307595600|ref|YP_003901917.1| - 0.094 12.4 0.7 0.2 11.3 0.5 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|307595600|ref|YP_003901917.1| - 0.12 12.2 3.8 6.1 6.8 2.6 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zf-met PF12874.2 gi|307595600|ref|YP_003901917.1| - 0.15 12.3 4.3 1.4 9.2 0.0 2.6 3 0 0 3 3 2 0 Zinc-finger of C2H2 type zf-C3HC4_3 PF13920.1 gi|307595600|ref|YP_003901917.1| - 0.17 11.6 4.8 0.71 9.5 3.4 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Elf1 PF05129.8 gi|307595600|ref|YP_003901917.1| - 0.2 11.3 1.7 0.88 9.3 0.1 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DZR PF12773.2 gi|307595600|ref|YP_003901917.1| - 0.2 11.4 2.6 0.69 9.7 1.8 1.9 1 1 0 1 1 1 0 Double zinc ribbon Prim_Zn_Ribbon PF08273.7 gi|307595600|ref|YP_003901917.1| - 0.33 11.0 1.8 0.67 10.0 0.1 2.0 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase FYVE PF01363.16 gi|307595600|ref|YP_003901917.1| - 0.44 10.4 5.6 2.2 8.2 1.3 2.1 1 1 1 2 2 2 0 FYVE zinc finger zinc_ribbon_2 PF13240.1 gi|307595600|ref|YP_003901917.1| - 0.79 9.2 3.0 2 8.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S14 PF00253.16 gi|307595600|ref|YP_003901917.1| - 1.1 8.7 5.2 1.8 8.0 0.6 2.2 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e Zn_Tnp_IS1595 PF12760.2 gi|307595600|ref|YP_003901917.1| - 2.1 8.2 5.4 0.59 9.9 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-RING_2 PF13639.1 gi|307595600|ref|YP_003901917.1| - 2.1 8.2 5.2 14 5.6 0.2 2.2 1 1 2 3 3 3 0 Ring finger domain DUF763 PF05559.6 gi|307595602|ref|YP_003901919.1| - 2.6e-113 378.2 0.0 3.1e-113 377.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Methyltransf_19 PF04672.7 gi|307595602|ref|YP_003901919.1| - 0.041 13.1 0.1 0.07 12.3 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl methyltransferase Acyl-CoA_dh_1 PF00441.19 gi|307595603|ref|YP_003901920.1| - 4.2e-38 130.7 1.6 6.3e-38 130.2 1.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|307595603|ref|YP_003901920.1| - 7.8e-19 68.3 0.0 2.3e-18 66.8 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|307595603|ref|YP_003901920.1| - 4.4e-18 65.8 0.2 6.8e-18 65.2 0.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|307595603|ref|YP_003901920.1| - 4.9e-12 45.1 0.3 1e-11 44.1 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain YrhK PF14145.1 gi|307595604|ref|YP_003901921.1| - 0.02 14.5 0.6 0.027 14.1 0.4 1.3 1 0 0 1 1 1 0 YrhK-like protein Sm_multidrug_ex PF06695.6 gi|307595604|ref|YP_003901921.1| - 0.073 13.2 0.5 0.081 13.0 0.3 1.2 1 0 0 1 1 1 0 Putative small multi-drug export protein DUF973 PF06157.6 gi|307595604|ref|YP_003901921.1| - 0.2 10.5 4.8 0.2 10.5 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF4064 PF13273.1 gi|307595604|ref|YP_003901921.1| - 0.65 10.1 6.9 0.85 9.7 4.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) EmrE PF13536.1 gi|307595605|ref|YP_003901922.1| - 0.13 12.4 10.8 0.22 11.7 7.5 1.4 1 1 0 1 1 1 0 Multidrug resistance efflux transporter Choline_transpo PF04515.7 gi|307595605|ref|YP_003901922.1| - 0.47 9.1 5.9 0.55 8.9 4.1 1.1 1 0 0 1 1 1 0 Plasma-membrane choline transporter YibE_F PF07907.6 gi|307595605|ref|YP_003901922.1| - 0.88 8.6 11.6 1.1 8.3 8.1 1.1 1 0 0 1 1 1 0 YibE/F-like protein MotA_ExbB PF01618.11 gi|307595605|ref|YP_003901922.1| - 2.3 7.8 6.3 3.2 7.3 4.4 1.3 1 1 0 1 1 1 0 MotA/TolQ/ExbB proton channel family MpPF26 PF07666.6 gi|307595605|ref|YP_003901922.1| - 3 7.7 11.3 0.36 10.7 2.8 1.9 1 1 1 2 2 2 0 M penetrans paralogue family 26 DUF1469 PF07332.6 gi|307595605|ref|YP_003901922.1| - 3.1 7.5 13.1 0.26 11.0 4.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) Peptidase_M50B PF13398.1 gi|307595605|ref|YP_003901922.1| - 6.1 6.1 12.4 7.2 5.9 8.6 1.1 1 0 0 1 1 1 0 Peptidase M50B-like Peptidase_M28 PF04389.12 gi|307595608|ref|YP_003901925.1| - 2.9e-14 53.2 0.0 1.3e-13 51.0 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M28 DUF1852 PF08908.6 gi|307595608|ref|YP_003901925.1| - 0.0078 15.0 0.3 0.012 14.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1852) PA PF02225.17 gi|307595608|ref|YP_003901925.1| - 0.055 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 PA domain CEP170_C PF15308.1 gi|307595608|ref|YP_003901925.1| - 0.073 11.3 0.1 0.1 10.8 0.1 1.1 1 0 0 1 1 1 0 CEP170 C-terminus CTP_transf_2 PF01467.21 gi|307595609|ref|YP_003901926.1| - 4.6e-11 43.0 0.0 6.3e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|307595609|ref|YP_003901926.1| - 0.011 15.3 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase PhoU PF01895.14 gi|307595610|ref|YP_003901927.1| - 1.2e-09 38.5 5.4 2.1e-09 37.6 1.7 2.5 2 0 0 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|307595610|ref|YP_003901927.1| - 8.9e-07 28.5 1.3 2.5e-06 27.0 0.9 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Synaptonemal_3 PF15191.1 gi|307595610|ref|YP_003901927.1| - 0.0051 16.5 0.3 0.0051 16.5 0.2 2.3 2 1 0 2 2 2 1 Synaptonemal complex central element protein 3 DUF2258 PF10015.4 gi|307595610|ref|YP_003901927.1| - 0.024 14.4 1.0 0.024 14.4 0.7 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2258) Prominin PF05478.6 gi|307595610|ref|YP_003901927.1| - 0.029 11.9 2.9 0.052 11.0 2.0 1.3 1 1 0 1 1 1 0 Prominin Methyltransf_26 PF13659.1 gi|307595611|ref|YP_003901928.1| - 1.7e-18 66.7 0.0 2e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307595611|ref|YP_003901928.1| - 1.7e-17 63.4 0.1 2.4e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|307595611|ref|YP_003901928.1| - 2e-17 63.0 0.1 3.3e-17 62.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|307595611|ref|YP_003901928.1| - 1.7e-13 51.1 0.0 2.2e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|307595611|ref|YP_003901928.1| - 2.2e-13 50.1 0.0 3.2e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|307595611|ref|YP_003901928.1| - 1.4e-12 47.3 0.2 2e-12 46.8 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|307595611|ref|YP_003901928.1| - 2.7e-11 43.7 0.0 4.6e-11 42.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|307595611|ref|YP_003901928.1| - 5.6e-11 42.1 0.0 7.4e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|307595611|ref|YP_003901928.1| - 7.5e-09 35.9 0.0 1.6e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307595611|ref|YP_003901928.1| - 4e-08 33.6 0.0 6.2e-08 33.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|307595611|ref|YP_003901928.1| - 1.2e-07 31.3 0.1 2.1e-07 30.6 0.1 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF43 PF01861.11 gi|307595611|ref|YP_003901928.1| - 2.2e-07 30.1 0.0 2.9e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_23 PF13489.1 gi|307595611|ref|YP_003901928.1| - 1.6e-06 27.8 0.0 2.1e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|307595611|ref|YP_003901928.1| - 2.9e-06 26.5 0.0 5.7e-06 25.6 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|307595611|ref|YP_003901928.1| - 3.3e-05 23.5 0.0 4.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|307595611|ref|YP_003901928.1| - 3.6e-05 23.0 0.1 7.8e-05 21.9 0.0 1.5 1 1 0 1 1 1 1 Tellurite resistance protein TehB Met_10 PF02475.11 gi|307595611|ref|YP_003901928.1| - 6.5e-05 22.6 0.1 8.2e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein FmrO PF07091.6 gi|307595611|ref|YP_003901928.1| - 0.00045 19.3 0.1 0.0041 16.1 0.0 2.0 2 0 0 2 2 2 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_16 PF10294.4 gi|307595611|ref|YP_003901928.1| - 0.001 18.5 0.6 0.0071 15.8 0.0 2.3 2 1 0 2 2 2 1 Putative methyltransferase NodS PF05401.6 gi|307595611|ref|YP_003901928.1| - 0.0012 18.2 0.0 0.0024 17.2 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.12 gi|307595611|ref|YP_003901928.1| - 0.0018 17.3 0.1 0.0035 16.4 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase Methyltrans_SAM PF10672.4 gi|307595611|ref|YP_003901928.1| - 0.0019 17.0 0.0 0.0027 16.5 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase FtsJ PF01728.14 gi|307595611|ref|YP_003901928.1| - 0.0021 18.0 0.0 0.0027 17.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase ADH_zinc_N PF00107.21 gi|307595611|ref|YP_003901928.1| - 0.0031 17.0 0.0 0.0051 16.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_32 PF13679.1 gi|307595611|ref|YP_003901928.1| - 0.0077 15.9 0.0 0.0095 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|307595611|ref|YP_003901928.1| - 0.011 14.4 0.0 0.015 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) GidB PF02527.10 gi|307595611|ref|YP_003901928.1| - 0.02 14.0 0.0 0.034 13.2 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G DUF938 PF06080.7 gi|307595611|ref|YP_003901928.1| - 0.027 13.9 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Pox_MCEL PF03291.11 gi|307595611|ref|YP_003901928.1| - 0.038 12.8 0.0 0.068 12.0 0.0 1.4 1 0 0 1 1 1 0 mRNA capping enzyme tRNA_U5-meth_tr PF05958.6 gi|307595611|ref|YP_003901928.1| - 0.061 11.9 0.1 0.18 10.4 0.1 1.8 1 1 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase N6_N4_Mtase PF01555.13 gi|307595611|ref|YP_003901928.1| - 0.064 12.7 0.1 0.16 11.3 0.0 1.6 2 0 0 2 2 2 0 DNA methylase Methyltransf_3 PF01596.12 gi|307595611|ref|YP_003901928.1| - 0.095 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_8 PF05148.10 gi|307595611|ref|YP_003901928.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Hypothetical methyltransferase CMAS PF02353.15 gi|307595611|ref|YP_003901928.1| - 0.11 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase LAGLIDADG_3 PF14528.1 gi|307595612|ref|YP_003901929.1| - 0.36 11.0 0.0 0.36 11.0 0.0 2.5 2 1 0 2 2 2 0 LAGLIDADG-like domain A2M PF00207.17 gi|307595613|ref|YP_003901930.1| - 0.045 13.3 0.1 0.096 12.2 0.1 1.7 1 1 0 1 1 1 0 Alpha-2-macroglobulin family DUF2232 PF09991.4 gi|307595613|ref|YP_003901930.1| - 0.096 11.6 1.5 0.12 11.3 1.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) DUF3139 PF11337.3 gi|307595613|ref|YP_003901930.1| - 0.32 11.3 2.9 0.48 10.7 2.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) Aminotran_1_2 PF00155.16 gi|307595615|ref|YP_003901932.1| - 3.9e-13 49.0 0.0 1.1e-12 47.5 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II FGGY_N PF00370.16 gi|307595616|ref|YP_003901933.1| - 1.2e-69 234.3 0.0 1.6e-69 233.9 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|307595616|ref|YP_003901933.1| - 7.9e-57 192.0 0.1 2.6e-56 190.4 0.0 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|307595616|ref|YP_003901933.1| - 0.0069 15.7 0.0 0.018 14.3 0.0 1.6 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Tn916-Xis PF09035.5 gi|307595616|ref|YP_003901933.1| - 0.032 14.3 0.1 0.086 12.9 0.0 1.8 2 0 0 2 2 2 0 Excisionase from transposon Tn916 Sugar_tr PF00083.19 gi|307595617|ref|YP_003901934.1| - 7.3e-66 222.5 32.7 9e-66 222.2 22.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|307595617|ref|YP_003901934.1| - 1.3e-32 112.8 47.0 1.3e-32 112.8 32.6 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF1228 PF06779.9 gi|307595617|ref|YP_003901934.1| - 0.18 11.8 13.2 2.7 8.0 0.8 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1228) GDPD PF03009.12 gi|307595618|ref|YP_003901935.1| - 5.2e-51 173.6 0.0 6.4e-51 173.3 0.0 1.1 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|307595618|ref|YP_003901935.1| - 1.9e-09 37.3 0.7 1.4e-07 31.4 0.2 2.5 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family DUF3132 PF11330.3 gi|307595618|ref|YP_003901935.1| - 0.083 12.7 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3132) DAO PF01266.19 gi|307595619|ref|YP_003901936.1| - 8.2e-50 169.6 1.5 9.5e-50 169.4 1.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|307595619|ref|YP_003901936.1| - 7.9e-07 28.4 9.6 7.3e-06 25.3 6.7 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|307595619|ref|YP_003901936.1| - 0.00066 18.8 6.3 0.047 12.7 4.4 2.5 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|307595619|ref|YP_003901936.1| - 0.0008 18.5 3.4 0.0008 18.5 2.4 2.5 1 1 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|307595619|ref|YP_003901936.1| - 0.0033 15.9 1.2 0.0053 15.2 0.8 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|307595619|ref|YP_003901936.1| - 0.0039 17.0 3.4 0.0071 16.2 2.4 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|307595619|ref|YP_003901936.1| - 0.0054 16.7 1.5 0.018 15.0 1.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|307595619|ref|YP_003901936.1| - 0.0058 15.5 4.4 0.0058 15.5 3.0 2.5 2 1 1 3 3 3 1 FAD binding domain GIDA PF01134.17 gi|307595619|ref|YP_003901936.1| - 0.1 11.4 3.4 0.15 10.8 1.2 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A DUF1348 PF07080.6 gi|307595619|ref|YP_003901936.1| - 0.18 11.5 0.0 0.35 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1348) Pyr_redox PF00070.22 gi|307595619|ref|YP_003901936.1| - 2.7 8.4 7.8 0.33 11.4 1.0 2.8 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase COXG PF06240.8 gi|307595620|ref|YP_003901937.1| - 2.6e-16 59.5 0.0 3.4e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.4 gi|307595620|ref|YP_003901937.1| - 0.00018 21.7 0.0 0.0002 21.5 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|307595620|ref|YP_003901937.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.4 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport Abhydrolase_6 PF12697.2 gi|307595621|ref|YP_003901938.1| - 2.6e-24 86.3 0.0 3.2e-24 86.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|307595621|ref|YP_003901938.1| - 2.9e-22 78.3 0.0 5.9e-22 77.3 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_5 PF12695.2 gi|307595621|ref|YP_003901938.1| - 2.9e-20 72.4 0.0 5.9e-20 71.4 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|307595621|ref|YP_003901938.1| - 1e-14 54.6 0.1 1e-12 48.0 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|307595621|ref|YP_003901938.1| - 8.6e-09 34.9 0.2 6.3e-06 25.5 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family AXE1 PF05448.7 gi|307595621|ref|YP_003901938.1| - 2e-06 26.5 0.1 0.0005 18.6 0.0 2.2 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.11 gi|307595621|ref|YP_003901938.1| - 1.3e-05 24.7 0.2 0.0067 15.9 0.0 2.3 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase LCAT PF02450.10 gi|307595621|ref|YP_003901938.1| - 6.5e-05 22.0 0.0 8.5e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase DLH PF01738.13 gi|307595621|ref|YP_003901938.1| - 0.00019 20.8 0.0 0.00067 19.0 0.0 1.8 2 0 0 2 2 2 1 Dienelactone hydrolase family DUF900 PF05990.7 gi|307595621|ref|YP_003901938.1| - 0.008 15.5 0.2 0.093 12.0 0.0 2.5 2 1 0 2 2 2 1 Alpha/beta hydrolase of unknown function (DUF900) PhoPQ_related PF10142.4 gi|307595621|ref|YP_003901938.1| - 0.017 13.6 0.0 0.023 13.1 0.0 1.1 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein Peptidase_S15 PF02129.13 gi|307595621|ref|YP_003901938.1| - 0.03 13.7 0.0 0.29 10.5 0.0 2.1 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) PGAP1 PF07819.8 gi|307595621|ref|YP_003901938.1| - 0.082 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein GFO_IDH_MocA PF01408.17 gi|307595622|ref|YP_003901939.1| - 1e-19 71.2 0.0 1.5e-19 70.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|307595622|ref|YP_003901939.1| - 3e-06 27.0 0.0 4.9e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Flavin_Reduct PF01613.13 gi|307595623|ref|YP_003901940.1| - 3.3e-24 85.5 0.0 4e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain AAA_22 PF13401.1 gi|307595624|ref|YP_003901941.1| - 3.2e-05 24.0 0.1 0.0001 22.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|307595624|ref|YP_003901941.1| - 8.8e-05 22.3 0.1 0.00025 20.8 0.0 1.7 2 1 0 2 2 1 1 Archaeal ATPase T2SE PF00437.15 gi|307595624|ref|YP_003901941.1| - 0.00019 20.4 0.0 0.00035 19.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|307595624|ref|YP_003901941.1| - 0.00026 20.4 1.7 0.00063 19.2 0.2 2.2 2 1 0 2 2 2 1 P-loop containing region of AAA domain MobB PF03205.9 gi|307595624|ref|YP_003901941.1| - 0.00065 19.4 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|307595624|ref|YP_003901941.1| - 0.0017 18.5 0.1 0.0029 17.8 0.1 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|307595624|ref|YP_003901941.1| - 0.002 17.6 0.0 0.0032 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|307595624|ref|YP_003901941.1| - 0.002 18.1 0.2 0.0098 15.8 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain ABC_tran PF00005.22 gi|307595624|ref|YP_003901941.1| - 0.002 18.4 0.1 0.0042 17.3 0.1 1.5 1 0 0 1 1 1 1 ABC transporter AAA_19 PF13245.1 gi|307595624|ref|YP_003901941.1| - 0.0025 17.5 0.0 0.0047 16.6 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|307595624|ref|YP_003901941.1| - 0.0035 16.7 0.0 0.0049 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|307595624|ref|YP_003901941.1| - 0.0043 16.5 0.1 0.0062 16.0 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|307595624|ref|YP_003901941.1| - 0.0049 16.6 0.0 0.0085 15.8 0.0 1.5 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.1 gi|307595624|ref|YP_003901941.1| - 0.0058 16.2 0.1 0.0093 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain Pox_A32 PF04665.7 gi|307595624|ref|YP_003901941.1| - 0.0064 15.8 0.1 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Poxvirus A32 protein NACHT PF05729.7 gi|307595624|ref|YP_003901941.1| - 0.0069 16.0 0.1 0.024 14.2 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.1 gi|307595624|ref|YP_003901941.1| - 0.01 16.1 0.0 0.034 14.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|307595624|ref|YP_003901941.1| - 0.014 16.2 0.1 0.031 15.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain PRK PF00485.13 gi|307595624|ref|YP_003901941.1| - 0.024 14.1 0.0 0.085 12.4 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.12 gi|307595624|ref|YP_003901941.1| - 0.025 14.0 0.1 0.041 13.3 0.1 1.4 1 1 0 1 1 1 0 IstB-like ATP binding protein DLIC PF05783.6 gi|307595624|ref|YP_003901941.1| - 0.031 12.9 0.0 0.039 12.6 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) DBI_PRT PF02277.12 gi|307595624|ref|YP_003901941.1| - 0.032 13.3 0.0 0.053 12.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyltransferase cobW PF02492.14 gi|307595624|ref|YP_003901941.1| - 0.034 13.5 0.1 0.05 13.0 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|307595624|ref|YP_003901941.1| - 0.042 13.2 0.3 0.26 10.6 0.1 2.2 1 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.12 gi|307595624|ref|YP_003901941.1| - 0.043 13.3 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_11 PF13086.1 gi|307595624|ref|YP_003901941.1| - 0.048 13.2 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|307595624|ref|YP_003901941.1| - 0.048 12.5 0.9 0.16 10.8 0.2 1.9 1 1 1 2 2 2 0 NB-ARC domain DUF258 PF03193.11 gi|307595624|ref|YP_003901941.1| - 0.05 12.7 0.1 0.079 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TrwB_AAD_bind PF10412.4 gi|307595624|ref|YP_003901941.1| - 0.057 12.0 0.1 0.089 11.3 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Sigma54_activat PF00158.21 gi|307595624|ref|YP_003901941.1| - 0.083 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Rad17 PF03215.10 gi|307595624|ref|YP_003901941.1| - 0.09 11.4 0.1 0.35 9.5 0.1 1.7 1 1 1 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|307595624|ref|YP_003901941.1| - 0.095 12.6 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|307595624|ref|YP_003901941.1| - 0.12 11.4 0.1 0.15 11.0 0.1 1.1 1 0 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.4 gi|307595624|ref|YP_003901941.1| - 0.12 11.3 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DAP3 PF10236.4 gi|307595624|ref|YP_003901941.1| - 0.12 11.2 0.1 0.18 10.7 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DEAD PF00270.24 gi|307595624|ref|YP_003901941.1| - 0.13 11.7 0.0 0.28 10.6 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase Zeta_toxin PF06414.7 gi|307595624|ref|YP_003901941.1| - 0.17 10.9 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|307595624|ref|YP_003901941.1| - 0.18 12.1 0.0 0.32 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Metallophos PF00149.23 gi|307595626|ref|YP_003901943.1| - 1.8e-28 99.2 0.8 2.4e-28 98.9 0.5 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|307595626|ref|YP_003901943.1| - 3.6e-06 26.8 0.0 5.3e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain FAD_binding_3 PF01494.14 gi|307595627|ref|YP_003901944.1| - 2.5e-18 66.2 0.8 2.6e-15 56.3 0.1 2.8 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|307595627|ref|YP_003901944.1| - 6.6e-09 35.1 1.0 4.8e-06 25.7 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|307595627|ref|YP_003901944.1| - 1.9e-07 30.4 0.1 3.4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|307595627|ref|YP_003901944.1| - 3.7e-07 28.9 0.1 5.2e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|307595627|ref|YP_003901944.1| - 6.8e-07 28.5 0.7 0.0022 16.9 0.2 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|307595627|ref|YP_003901944.1| - 9.5e-06 24.4 0.3 0.0031 16.2 0.0 2.9 3 0 0 3 3 3 1 Tryptophan halogenase Thi4 PF01946.12 gi|307595627|ref|YP_003901944.1| - 1.2e-05 24.5 0.0 2.2e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|307595627|ref|YP_003901944.1| - 1.8e-05 23.8 0.1 2.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|307595627|ref|YP_003901944.1| - 2.7e-05 23.1 0.0 8.6e-05 21.5 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|307595627|ref|YP_003901944.1| - 3.8e-05 23.6 0.0 0.00015 21.7 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|307595627|ref|YP_003901944.1| - 0.00018 21.8 0.2 0.0039 17.5 0.1 2.3 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|307595627|ref|YP_003901944.1| - 0.00066 19.6 0.2 0.0011 18.9 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|307595627|ref|YP_003901944.1| - 0.057 12.9 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|307595627|ref|YP_003901944.1| - 0.067 12.8 0.1 0.095 12.3 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDI PF00996.13 gi|307595627|ref|YP_003901944.1| - 0.14 10.4 0.0 0.29 9.4 0.0 1.4 2 0 0 2 2 2 0 GDP dissociation inhibitor Glyco_tranf_2_3 PF13641.1 gi|307595628|ref|YP_003901945.1| - 4.7e-29 101.7 0.0 6.4e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|307595628|ref|YP_003901945.1| - 1.4e-21 76.9 0.2 3e-21 75.8 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|307595628|ref|YP_003901945.1| - 2.2e-18 66.6 12.8 2.2e-18 66.6 8.9 3.0 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|307595628|ref|YP_003901945.1| - 4.1e-12 45.7 0.0 7e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|307595628|ref|YP_003901945.1| - 1.2e-10 40.9 0.0 1.6e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.9 gi|307595628|ref|YP_003901945.1| - 0.047 13.1 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase DUF2067 PF09840.4 gi|307595629|ref|YP_003901946.1| - 2.7e-26 92.2 1.7 3.1e-26 92.0 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) Peptidase_U57 PF05582.7 gi|307595629|ref|YP_003901946.1| - 0.053 12.4 0.0 0.069 12.1 0.0 1.2 1 0 0 1 1 1 0 YabG peptidase U57 Cation_efflux PF01545.16 gi|307595630|ref|YP_003901947.1| - 2.1e-68 230.4 24.6 3e-56 190.6 10.2 3.0 1 1 2 3 3 3 3 Cation efflux family SpoVG PF04026.7 gi|307595630|ref|YP_003901947.1| - 0.036 14.0 0.2 0.11 12.4 0.1 1.9 1 0 0 1 1 1 0 SpoVG AMP-binding_C_2 PF14535.1 gi|307595630|ref|YP_003901947.1| - 0.091 12.8 5.9 0.071 13.1 0.8 2.8 3 0 0 3 3 3 0 AMP-binding enzyme C-terminal domain IncA PF04156.9 gi|307595632|ref|YP_003901949.1| - 0.00031 20.3 0.1 0.26 10.8 0.1 2.2 1 1 1 2 2 2 2 IncA protein Syntaxin PF00804.20 gi|307595632|ref|YP_003901949.1| - 0.0084 16.2 5.7 0.044 13.9 1.6 2.5 2 1 0 2 2 2 1 Syntaxin APG17 PF04108.7 gi|307595632|ref|YP_003901949.1| - 0.01 14.6 5.3 0.098 11.4 0.1 2.2 1 1 1 2 2 2 0 Autophagy protein Apg17 Rootletin PF15035.1 gi|307595632|ref|YP_003901949.1| - 0.01 15.8 3.4 1.3 8.9 0.0 2.7 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion FlxA PF14282.1 gi|307595632|ref|YP_003901949.1| - 0.01 15.7 2.0 0.079 12.9 0.1 2.5 1 1 2 3 3 3 0 FlxA-like protein YtxH PF12732.2 gi|307595632|ref|YP_003901949.1| - 0.012 15.9 4.1 0.43 10.9 0.2 2.4 2 0 0 2 2 2 0 YtxH-like protein WASH-7_N PF14745.1 gi|307595632|ref|YP_003901949.1| - 0.016 13.4 2.6 0.019 13.1 1.3 1.4 1 1 0 1 1 1 0 WASH complex subunit 7, N-terminal WEMBL PF05701.6 gi|307595632|ref|YP_003901949.1| - 0.021 13.2 5.8 0.089 11.2 3.3 1.9 1 1 1 2 2 2 0 Weak chloroplast movement under blue light SHOCT PF09851.4 gi|307595632|ref|YP_003901949.1| - 0.022 14.2 9.7 0.075 12.5 0.5 3.7 3 1 0 4 4 4 0 Short C-terminal domain AAA_13 PF13166.1 gi|307595632|ref|YP_003901949.1| - 0.03 12.8 7.2 0.069 11.6 5.0 1.6 1 1 0 1 1 1 0 AAA domain LOH1CR12 PF10158.4 gi|307595632|ref|YP_003901949.1| - 0.035 13.8 1.1 0.088 12.6 0.2 2.1 2 1 0 2 2 2 0 Tumour suppressor protein PuR_N PF09182.5 gi|307595632|ref|YP_003901949.1| - 0.046 13.3 1.5 0.34 10.5 0.0 2.8 3 1 1 4 4 3 0 Bacterial purine repressor, N-terminal Sas10_Utp3 PF04000.10 gi|307595632|ref|YP_003901949.1| - 0.065 13.4 2.7 20 5.4 0.1 3.3 2 1 1 3 3 3 0 Sas10/Utp3/C1D family HSBP1 PF06825.7 gi|307595632|ref|YP_003901949.1| - 0.065 12.8 6.1 0.23 11.0 0.7 2.7 2 1 0 2 2 2 0 Heat shock factor binding protein 1 Cortex-I_coil PF09304.5 gi|307595632|ref|YP_003901949.1| - 0.072 13.1 6.2 4 7.5 0.4 3.0 1 1 2 3 3 3 0 Cortexillin I, coiled coil DUF3375 PF11855.3 gi|307595632|ref|YP_003901949.1| - 0.076 11.7 1.5 0.1 11.3 0.5 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3375) GvpG PF05120.7 gi|307595632|ref|YP_003901949.1| - 0.08 12.7 4.5 0.2 11.4 0.5 2.8 3 0 0 3 3 3 0 Gas vesicle protein G DUF1311 PF07007.7 gi|307595632|ref|YP_003901949.1| - 0.14 12.2 0.9 3.9 7.6 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1311) AKNA PF12443.3 gi|307595632|ref|YP_003901949.1| - 0.19 11.7 2.2 1.4 8.9 0.0 2.5 3 0 0 3 3 2 0 AT-hook-containing transcription factor 23S_rRNA_IVP PF05635.6 gi|307595632|ref|YP_003901949.1| - 0.2 11.5 1.8 0.54 10.1 0.1 2.4 2 1 1 3 3 3 0 23S rRNA-intervening sequence protein DUF342 PF03961.8 gi|307595632|ref|YP_003901949.1| - 0.21 9.9 6.7 0.14 10.5 2.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF342) CorA PF01544.13 gi|307595632|ref|YP_003901949.1| - 0.27 10.2 5.4 0.46 9.4 3.8 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein APG6 PF04111.7 gi|307595632|ref|YP_003901949.1| - 0.28 10.2 5.9 0.28 10.1 3.5 1.4 1 1 0 1 1 1 0 Autophagy protein Apg6 TMPIT PF07851.8 gi|307595632|ref|YP_003901949.1| - 0.29 10.1 3.4 2.2 7.2 0.4 2.0 1 1 1 2 2 2 0 TMPIT-like protein Fib_alpha PF08702.5 gi|307595632|ref|YP_003901949.1| - 0.39 10.8 8.8 5.4 7.1 1.7 2.8 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF1043 PF06295.7 gi|307595632|ref|YP_003901949.1| - 0.47 10.1 5.6 2.1 7.9 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1043) DUF1033 PF06279.6 gi|307595632|ref|YP_003901949.1| - 0.56 10.0 3.8 0.3 10.8 0.7 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1033) DrrA_P4M PF14860.1 gi|307595632|ref|YP_003901949.1| - 0.78 9.4 6.9 0.53 10.0 3.2 2.0 2 1 0 2 2 2 0 DrrA phosphatidylinositol 4-phosphate binding domain COG5 PF10392.4 gi|307595632|ref|YP_003901949.1| - 0.91 9.4 7.0 2.1 8.3 1.4 2.9 1 1 2 3 3 3 0 Golgi transport complex subunit 5 TPR_MLP1_2 PF07926.7 gi|307595632|ref|YP_003901949.1| - 0.98 9.1 7.0 2.9 7.6 1.0 2.7 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Imm3 PF14425.1 gi|307595632|ref|YP_003901949.1| - 1 9.3 7.5 6.9 6.6 4.5 2.6 1 1 1 2 2 2 0 Immunity protein Imm3 Vip3A_N PF12495.3 gi|307595632|ref|YP_003901949.1| - 1.1 8.9 6.4 2.9 7.5 3.8 2.1 1 1 1 2 2 2 0 Vegetative insecticide protein 3A N terminal Syntaxin-6_N PF09177.6 gi|307595632|ref|YP_003901949.1| - 1.1 9.6 6.2 8.5 6.8 0.9 3.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Prefoldin PF02996.12 gi|307595632|ref|YP_003901949.1| - 1.4 8.5 11.4 13 5.4 0.2 3.9 4 0 0 4 4 4 0 Prefoldin subunit Snapin_Pallidin PF14712.1 gi|307595632|ref|YP_003901949.1| - 1.9 8.8 6.1 2.3 8.5 0.6 2.8 2 1 1 3 3 3 0 Snapin/Pallidin DivIVA PF05103.8 gi|307595632|ref|YP_003901949.1| - 2.2 8.3 5.9 3.4 7.7 0.2 2.8 1 1 1 2 2 2 0 DivIVA protein V-SNARE PF05008.10 gi|307595632|ref|YP_003901949.1| - 2.8 8.1 7.0 15 5.8 0.1 3.6 3 1 0 3 3 3 0 Vesicle transport v-SNARE protein N-terminus DUF2443 PF10398.4 gi|307595632|ref|YP_003901949.1| - 3.9 7.3 9.7 3.5 7.4 0.7 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF2443) Ribosomal_L29 PF00831.18 gi|307595632|ref|YP_003901949.1| - 7.6 6.3 8.5 1.3 8.7 0.2 3.1 4 0 0 4 4 2 0 Ribosomal L29 protein SHOCT PF09851.4 gi|307595633|ref|YP_003901950.1| - 2.1e-06 26.9 9.5 0.0011 18.3 1.9 3.5 3 0 0 3 3 3 2 Short C-terminal domain Cep57_MT_bd PF06657.8 gi|307595633|ref|YP_003901950.1| - 0.012 15.5 3.5 2 8.4 0.2 2.9 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 GvpG PF05120.7 gi|307595633|ref|YP_003901950.1| - 0.015 15.0 2.2 0.52 10.1 0.0 2.6 2 0 0 2 2 2 0 Gas vesicle protein G SBP_bac_7 PF03480.8 gi|307595633|ref|YP_003901950.1| - 0.017 14.2 0.2 0.036 13.1 0.1 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 DUF940 PF06082.6 gi|307595633|ref|YP_003901950.1| - 0.034 12.7 1.7 0.039 12.5 1.2 1.1 1 0 0 1 1 1 0 Bacterial putative lipoprotein (DUF940) YgaB PF14182.1 gi|307595633|ref|YP_003901950.1| - 0.036 14.2 1.1 0.036 14.2 0.8 2.9 2 1 2 4 4 4 0 YgaB-like protein Spectrin PF00435.16 gi|307595633|ref|YP_003901950.1| - 0.044 14.0 7.2 0.028 14.6 1.7 2.3 1 1 1 2 2 2 0 Spectrin repeat Baculo_PEP_C PF04513.7 gi|307595633|ref|YP_003901950.1| - 0.083 12.7 1.9 0.65 9.8 0.1 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF365 PF04033.7 gi|307595633|ref|YP_003901950.1| - 0.088 12.8 2.3 0.078 12.9 0.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF365) Uds1 PF15456.1 gi|307595633|ref|YP_003901950.1| - 0.088 12.8 5.5 0.038 13.9 2.0 1.8 2 0 0 2 2 2 0 Up-regulated During Septation NPV_P10 PF05531.7 gi|307595633|ref|YP_003901950.1| - 0.092 13.0 0.3 0.092 13.0 0.2 2.7 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein THOC7 PF05615.8 gi|307595633|ref|YP_003901950.1| - 0.12 12.6 13.6 0.51 10.5 0.7 3.2 1 1 1 2 2 2 0 Tho complex subunit 7 AAA_13 PF13166.1 gi|307595633|ref|YP_003901950.1| - 0.38 9.1 11.6 0.52 8.6 7.8 1.4 1 1 0 1 1 1 0 AAA domain Prefoldin PF02996.12 gi|307595633|ref|YP_003901950.1| - 0.42 10.2 9.1 0.17 11.5 0.7 3.1 3 0 0 3 3 3 0 Prefoldin subunit Z1 PF10593.4 gi|307595633|ref|YP_003901950.1| - 0.43 9.7 4.8 0.4 9.8 2.4 1.7 1 1 0 1 1 1 0 Z1 domain WXG100 PF06013.7 gi|307595633|ref|YP_003901950.1| - 0.6 10.1 4.8 11 6.1 0.0 3.0 3 0 0 3 3 2 0 Proteins of 100 residues with WXG CHD5 PF04420.9 gi|307595633|ref|YP_003901950.1| - 0.65 9.6 4.8 0.21 11.2 1.1 1.9 2 1 0 2 2 2 0 CHD5-like protein RRF PF01765.14 gi|307595633|ref|YP_003901950.1| - 0.78 9.1 15.5 0.28 10.6 3.3 3.4 1 1 1 3 3 3 0 Ribosome recycling factor AbiH PF14253.1 gi|307595633|ref|YP_003901950.1| - 1.1 8.7 9.2 1.6 8.2 6.3 1.4 1 1 0 1 1 1 0 Bacteriophage abortive infection AbiH DUF4363 PF14276.1 gi|307595633|ref|YP_003901950.1| - 1.5 8.5 8.4 1.6 8.4 1.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) Syntaxin-6_N PF09177.6 gi|307595633|ref|YP_003901950.1| - 1.5 9.2 8.8 4 7.9 0.4 2.6 1 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF1759 PF03564.10 gi|307595633|ref|YP_003901950.1| - 2.5 7.8 7.6 13 5.5 5.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1759) Fzo_mitofusin PF04799.8 gi|307595633|ref|YP_003901950.1| - 2.6 7.3 6.6 16 4.8 0.1 2.9 1 1 2 3 3 3 0 fzo-like conserved region DUF342 PF03961.8 gi|307595633|ref|YP_003901950.1| - 2.7 6.3 9.7 7.3 4.8 6.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF342) DUF883 PF05957.8 gi|307595633|ref|YP_003901950.1| - 3.9 7.9 9.9 2.3 8.6 0.1 3.8 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF883) CCDC-167 PF15188.1 gi|307595633|ref|YP_003901950.1| - 4.8 7.1 10.6 14 5.7 1.2 3.4 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 Mt_ATP-synt_B PF05405.9 gi|307595633|ref|YP_003901950.1| - 8.9 5.7 10.5 0.15 11.5 1.0 2.4 2 1 1 3 3 3 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) NTP_transferase PF00483.18 gi|307595634|ref|YP_003901951.1| - 7.5e-22 77.8 0.0 9.1e-22 77.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|307595634|ref|YP_003901951.1| - 2.7e-05 24.3 0.0 2.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2218 PF09981.4 gi|307595635|ref|YP_003901952.1| - 0.016 15.3 0.0 0.024 14.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) HTH_5 PF01022.15 gi|307595635|ref|YP_003901952.1| - 0.1 12.2 0.0 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family PfkB PF00294.19 gi|307595636|ref|YP_003901953.1| - 4.2e-53 180.4 0.0 5e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|307595636|ref|YP_003901953.1| - 0.02 14.0 0.0 0.03 13.5 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase DNA_ligase_A_M PF01068.16 gi|307595638|ref|YP_003901955.1| - 2.7e-62 209.7 0.2 4.4e-62 209.0 0.1 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|307595638|ref|YP_003901955.1| - 2.2e-48 164.4 0.0 2.8e-47 160.8 0.0 2.2 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|307595638|ref|YP_003901955.1| - 1.7e-22 79.6 0.0 6.2e-22 77.8 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|307595638|ref|YP_003901955.1| - 0.022 14.4 1.1 0.059 13.0 0.0 2.3 3 0 0 3 3 3 0 DNA ligase OB-like domain SHMT PF00464.14 gi|307595639|ref|YP_003901956.1| - 2e-79 266.8 0.0 2.6e-79 266.4 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|307595639|ref|YP_003901956.1| - 4.8e-13 48.7 0.0 9.7e-13 47.7 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|307595639|ref|YP_003901956.1| - 7.2e-12 45.0 0.0 1e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|307595639|ref|YP_003901956.1| - 1.2e-05 24.2 0.1 2.1e-05 23.4 0.1 1.5 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|307595639|ref|YP_003901956.1| - 2e-05 23.8 0.0 4.1e-05 22.7 0.0 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|307595639|ref|YP_003901956.1| - 0.0057 14.9 0.2 0.061 11.5 0.0 2.2 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme ProRS-C_2 PF09181.5 gi|307595639|ref|YP_003901956.1| - 0.036 13.9 0.4 0.14 12.1 0.0 2.1 2 0 0 2 2 2 0 Prolyl-tRNA synthetase, C-terminal SelA PF03841.8 gi|307595639|ref|YP_003901956.1| - 0.043 12.5 0.0 0.096 11.4 0.0 1.6 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase YopJ PF03421.11 gi|307595639|ref|YP_003901956.1| - 0.099 12.5 0.1 0.21 11.4 0.0 1.6 2 0 0 2 2 2 0 YopJ Serine/Threonine acetyltransferase MAF_flag10 PF01973.13 gi|307595640|ref|YP_003901957.1| - 1.9e-11 43.7 0.0 2.7e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 PEPCK_ATP PF01293.15 gi|307595640|ref|YP_003901957.1| - 0.015 13.8 0.0 0.021 13.3 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Trigger_N PF05697.8 gi|307595640|ref|YP_003901957.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) Ribosomal_S4e PF00900.15 gi|307595641|ref|YP_003901958.1| - 1e-29 101.9 0.1 2.2e-29 100.9 0.0 1.6 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.7 gi|307595641|ref|YP_003901958.1| - 1.3e-12 47.3 4.1 2.1e-12 46.6 2.8 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|307595641|ref|YP_003901958.1| - 1.5e-10 40.3 0.5 5.1e-10 38.6 0.1 2.1 2 0 0 2 2 2 1 S4 domain NotI PF12183.3 gi|307595641|ref|YP_003901958.1| - 0.013 14.5 0.1 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease NotI KOW PF00467.24 gi|307595641|ref|YP_003901958.1| - 0.043 13.5 0.3 0.14 11.8 0.2 2.0 1 0 0 1 1 1 0 KOW motif KOW PF00467.24 gi|307595642|ref|YP_003901959.1| - 4.4e-08 32.5 1.9 4.4e-08 32.5 1.3 2.4 3 0 0 3 3 3 1 KOW motif IF2_assoc PF08364.6 gi|307595642|ref|YP_003901959.1| - 0.071 13.1 0.2 0.18 11.8 0.1 1.7 1 0 0 1 1 1 0 Bacterial translation initiation factor IF-2 associated region EamA PF00892.15 gi|307595643|ref|YP_003901960.1| - 1.9e-29 102.2 36.4 3.3e-15 56.2 9.4 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|307595643|ref|YP_003901960.1| - 3e-05 24.1 2.5 3e-05 24.1 1.7 3.3 3 1 1 4 4 4 2 Multidrug resistance efflux transporter MTS PF05175.9 gi|307595644|ref|YP_003901961.1| - 1.1e-43 148.5 0.0 1.4e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|307595644|ref|YP_003901961.1| - 7.1e-18 64.6 0.0 9.7e-18 64.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|307595644|ref|YP_003901961.1| - 6.1e-15 55.2 0.0 8.9e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|307595644|ref|YP_003901961.1| - 1.3e-14 54.0 0.3 1.7e-14 53.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|307595644|ref|YP_003901961.1| - 1.2e-11 45.1 0.0 1.8e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|307595644|ref|YP_003901961.1| - 8.7e-08 31.9 0.1 1.2e-07 31.5 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|307595644|ref|YP_003901961.1| - 4.1e-07 30.3 0.0 7.1e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307595644|ref|YP_003901961.1| - 5.3e-07 30.0 0.0 8.2e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|307595644|ref|YP_003901961.1| - 5.3e-06 26.0 0.1 7.3e-06 25.5 0.1 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.1 gi|307595644|ref|YP_003901961.1| - 7e-06 25.8 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307595644|ref|YP_003901961.1| - 4.3e-05 23.8 0.0 7.8e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|307595644|ref|YP_003901961.1| - 0.00011 21.0 0.1 0.0002 20.1 0.1 1.4 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.14 gi|307595644|ref|YP_003901961.1| - 0.0011 18.6 0.1 0.0015 18.1 0.1 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FmrO PF07091.6 gi|307595644|ref|YP_003901961.1| - 0.0074 15.3 0.1 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) N6_Mtase PF02384.11 gi|307595644|ref|YP_003901961.1| - 0.012 14.6 0.0 0.016 14.2 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase UPF0020 PF01170.13 gi|307595644|ref|YP_003901961.1| - 0.016 14.7 0.1 0.13 11.8 0.1 1.8 1 1 1 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.12 gi|307595644|ref|YP_003901961.1| - 0.024 13.6 0.2 0.11 11.5 0.0 1.9 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_32 PF13679.1 gi|307595644|ref|YP_003901961.1| - 0.032 13.9 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|307595644|ref|YP_003901961.1| - 0.057 12.5 0.1 0.11 11.6 0.1 1.5 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_3 PF01596.12 gi|307595644|ref|YP_003901961.1| - 0.067 12.2 0.1 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase CMAS PF02353.15 gi|307595644|ref|YP_003901961.1| - 0.069 12.2 0.0 0.089 11.8 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|307595644|ref|YP_003901961.1| - 0.069 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB TRM PF02005.11 gi|307595644|ref|YP_003901961.1| - 0.1 11.5 0.1 0.13 11.1 0.1 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Peptidase_M1 PF01433.15 gi|307595645|ref|YP_003901962.1| - 9.3e-63 212.6 0.0 1.5e-62 211.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M1 HEAT_2 PF13646.1 gi|307595645|ref|YP_003901962.1| - 3.4e-46 155.4 12.8 5.5e-16 58.6 1.4 4.6 2 1 4 6 6 6 5 HEAT repeats Peptidase_MA_2 PF13485.1 gi|307595645|ref|YP_003901962.1| - 1.1e-16 61.0 0.8 5.1e-16 58.8 0.6 2.2 1 0 0 1 1 1 1 Peptidase MA superfamily HEAT PF02985.17 gi|307595645|ref|YP_003901962.1| - 4.9e-16 57.3 0.2 0.032 14.2 0.0 5.9 5 0 0 5 5 5 4 HEAT repeat HEAT_PBS PF03130.11 gi|307595645|ref|YP_003901962.1| - 2.6e-11 42.8 19.5 0.00017 21.7 0.6 7.9 8 0 0 8 8 8 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|307595645|ref|YP_003901962.1| - 2.2e-08 34.3 9.5 2.7e-05 24.5 0.5 5.1 3 1 2 5 5 5 2 HEAT-like repeat Peptidase_M61 PF05299.7 gi|307595645|ref|YP_003901962.1| - 0.0079 16.1 0.9 0.052 13.5 0.6 2.3 1 1 0 1 1 1 1 M61 glycyl aminopeptidase Vitellogenin_N PF01347.17 gi|307595645|ref|YP_003901962.1| - 0.011 14.0 0.1 0.074 11.2 0.0 2.0 1 1 1 2 2 2 0 Lipoprotein amino terminal region ERAP1_C PF11838.3 gi|307595645|ref|YP_003901962.1| - 0.041 13.1 0.1 0.1 11.8 0.1 1.6 1 0 0 1 1 1 0 ERAP1-like C-terminal domain DUF4200 PF13863.1 gi|307595645|ref|YP_003901962.1| - 0.12 12.3 1.5 0.21 11.5 1.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DUF3385 PF11865.3 gi|307595645|ref|YP_003901962.1| - 0.13 12.1 0.0 42 4.0 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF3385) Arm PF00514.18 gi|307595645|ref|YP_003901962.1| - 0.21 11.4 0.1 4.1 7.3 0.0 3.2 4 0 0 4 4 4 0 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|307595645|ref|YP_003901962.1| - 0.44 8.8 0.0 11 4.2 0.0 2.4 1 1 2 3 3 3 0 Adaptin N terminal region BEX PF04538.7 gi|307595645|ref|YP_003901962.1| - 0.66 10.2 3.8 1.4 9.1 2.6 1.6 1 0 0 1 1 1 0 Brain expressed X-linked like family BMFP PF04380.8 gi|307595645|ref|YP_003901962.1| - 0.68 10.1 5.7 0.79 9.8 2.5 2.2 2 1 0 2 2 1 0 Membrane fusogenic activity ALF PF03752.8 gi|307595645|ref|YP_003901962.1| - 1.1 9.1 14.8 0.27 11.1 1.3 4.2 4 1 1 5 5 4 0 Short repeats of unknown function TusA PF01206.12 gi|307595646|ref|YP_003901963.1| - 2.8e-08 33.2 0.0 3.2e-08 33.0 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Peptidase_S24 PF00717.18 gi|307595646|ref|YP_003901963.1| - 0.0027 17.3 0.0 0.0031 17.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase S24-like DUF2240 PF09999.4 gi|307595647|ref|YP_003901964.1| - 0.035 13.5 0.2 0.2 11.0 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2240) FlaC_arch PF05377.6 gi|307595647|ref|YP_003901964.1| - 0.39 10.6 3.6 0.81 9.6 0.1 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) AMP-binding PF00501.23 gi|307595648|ref|YP_003901965.1| - 2.7e-96 322.5 0.0 3.4e-96 322.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|307595648|ref|YP_003901965.1| - 7e-24 84.5 0.8 3.6e-23 82.2 0.2 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ADPrib_exo_Tox PF03496.9 gi|307595648|ref|YP_003901965.1| - 0.064 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme Grp1_Fun34_YaaH PF01184.14 gi|307595649|ref|YP_003901966.1| - 3e-45 154.0 25.9 3.9e-45 153.7 18.0 1.1 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family DUF309 PF03745.9 gi|307595649|ref|YP_003901966.1| - 0.048 13.1 0.0 0.11 11.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF309) Thy1 PF02511.10 gi|307595650|ref|YP_003901967.1| - 1.4e-37 128.8 0.0 1.9e-37 128.5 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Catalase-rel PF06628.7 gi|307595650|ref|YP_003901967.1| - 0.14 12.0 0.0 9.5 6.1 0.0 2.8 3 0 0 3 3 3 0 Catalase-related immune-responsive Polysacc_synt PF01943.12 gi|307595651|ref|YP_003901968.1| - 1.8e-08 33.9 32.5 1.8e-08 33.9 22.5 3.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NTP_transferase PF00483.18 gi|307595652|ref|YP_003901969.1| - 1.9e-43 148.5 0.0 2.2e-43 148.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|307595652|ref|YP_003901969.1| - 8.7e-11 42.1 0.0 1.2e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|307595652|ref|YP_003901969.1| - 5.4e-05 22.5 4.1 0.00024 20.4 0.3 3.5 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Bactofilin PF04519.8 gi|307595652|ref|YP_003901969.1| - 0.00012 22.0 1.1 0.00021 21.2 0.8 1.3 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Glycos_transf_2 PF00535.21 gi|307595652|ref|YP_003901969.1| - 0.013 15.2 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Lyase_8_N PF08124.6 gi|307595652|ref|YP_003901969.1| - 0.015 14.1 0.0 0.021 13.6 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain Epimerase PF01370.16 gi|307595653|ref|YP_003901970.1| - 9.4e-34 116.8 0.0 1.1e-33 116.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|307595653|ref|YP_003901970.1| - 2.6e-13 50.4 0.0 3.5e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|307595653|ref|YP_003901970.1| - 1.5e-12 46.9 0.0 1.9e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|307595653|ref|YP_003901970.1| - 4.4e-12 45.2 0.0 5.8e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|307595653|ref|YP_003901970.1| - 0.00069 18.6 0.3 0.0098 14.8 0.0 2.6 2 2 1 3 3 3 1 Polysaccharide biosynthesis protein Tropomyosin PF00261.15 gi|307595654|ref|YP_003901971.1| - 4.1e-12 45.7 6.5 7.5e-12 44.8 4.5 1.4 1 0 0 1 1 1 1 Tropomyosin BLOC1_2 PF10046.4 gi|307595654|ref|YP_003901971.1| - 5.5e-09 36.0 8.2 0.013 15.6 0.9 4.6 2 1 3 5 5 4 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.1 gi|307595654|ref|YP_003901971.1| - 1.1e-08 34.0 4.9 1.8e-08 33.3 3.4 1.3 1 0 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.7 gi|307595654|ref|YP_003901971.1| - 1.1e-08 34.9 0.4 0.00047 19.9 0.8 2.4 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus XhlA PF10779.4 gi|307595654|ref|YP_003901971.1| - 1.3e-08 34.5 19.0 0.00014 21.6 2.5 3.2 2 1 0 2 2 2 2 Haemolysin XhlA FlaC_arch PF05377.6 gi|307595654|ref|YP_003901971.1| - 1.9e-08 34.0 19.4 0.0032 17.3 1.5 4.4 2 1 2 4 4 4 3 Flagella accessory protein C (FlaC) Laminin_II PF06009.7 gi|307595654|ref|YP_003901971.1| - 2.9e-08 33.5 1.4 8.6e-05 22.3 0.4 2.3 1 1 1 2 2 2 2 Laminin Domain II RmuC PF02646.11 gi|307595654|ref|YP_003901971.1| - 6e-08 31.8 3.9 0.0028 16.5 0.1 2.3 1 1 1 2 2 2 2 RmuC family Tropomyosin_1 PF12718.2 gi|307595654|ref|YP_003901971.1| - 9e-08 32.0 3.9 4.4e-06 26.5 0.9 2.6 2 1 0 2 2 1 1 Tropomyosin like Snapin_Pallidin PF14712.1 gi|307595654|ref|YP_003901971.1| - 3.7e-07 30.3 7.8 0.32 11.3 0.7 4.6 1 1 3 4 4 4 2 Snapin/Pallidin Vac_Fusion PF02346.11 gi|307595654|ref|YP_003901971.1| - 7.7e-07 28.4 15.6 0.015 14.6 0.8 4.2 1 1 2 3 3 3 2 Chordopoxvirus fusion protein EzrA PF06160.7 gi|307595654|ref|YP_003901971.1| - 8.1e-07 27.5 6.0 3.5e-06 25.5 3.9 2.0 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA DUF1664 PF07889.7 gi|307595654|ref|YP_003901971.1| - 8.4e-07 28.8 7.9 0.00027 20.7 1.8 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Fib_alpha PF08702.5 gi|307595654|ref|YP_003901971.1| - 1.6e-06 28.3 13.5 0.00024 21.2 1.3 2.6 2 1 1 3 3 2 2 Fibrinogen alpha/beta chain family Reo_sigmaC PF04582.7 gi|307595654|ref|YP_003901971.1| - 1.6e-06 27.5 0.1 2.4e-06 26.9 0.1 1.3 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Prefoldin_2 PF01920.15 gi|307595654|ref|YP_003901971.1| - 2e-06 27.5 7.0 0.16 11.7 0.1 4.1 1 1 4 5 5 5 3 Prefoldin subunit MscS_porin PF12795.2 gi|307595654|ref|YP_003901971.1| - 2.2e-06 27.1 0.0 0.00023 20.5 0.1 2.4 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain DUF4140 PF13600.1 gi|307595654|ref|YP_003901971.1| - 2.7e-06 27.7 1.9 0.081 13.3 0.2 3.5 1 1 2 3 3 3 1 N-terminal domain of unknown function (DUF4140) Spc7 PF08317.6 gi|307595654|ref|YP_003901971.1| - 5.4e-06 25.2 5.1 5.4e-06 25.2 3.5 1.7 2 0 0 2 2 2 1 Spc7 kinetochore protein DUF16 PF01519.11 gi|307595654|ref|YP_003901971.1| - 7e-06 26.1 8.7 0.00018 21.7 1.7 2.7 2 1 1 3 3 2 1 Protein of unknown function DUF16 V_ATPase_I PF01496.14 gi|307595654|ref|YP_003901971.1| - 7.5e-06 24.1 4.2 0.00029 18.8 1.3 2.0 1 1 1 2 2 2 1 V-type ATPase 116kDa subunit family GP41 PF00517.12 gi|307595654|ref|YP_003901971.1| - 7.6e-06 25.6 5.0 0.072 12.6 0.2 4.0 2 1 2 4 4 3 2 Retroviral envelope protein ADIP PF11559.3 gi|307595654|ref|YP_003901971.1| - 1.1e-05 25.4 1.3 0.00034 20.5 0.3 2.2 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding Laminin_I PF06008.9 gi|307595654|ref|YP_003901971.1| - 1.1e-05 24.8 1.2 0.001 18.4 0.1 2.2 1 1 1 2 2 2 2 Laminin Domain I SlyX PF04102.7 gi|307595654|ref|YP_003901971.1| - 1.6e-05 25.2 4.8 0.28 11.5 0.4 3.6 1 1 2 3 3 3 1 SlyX CENP-F_leu_zip PF10473.4 gi|307595654|ref|YP_003901971.1| - 1.9e-05 24.5 4.3 2.8e-05 23.9 3.0 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.7 gi|307595654|ref|YP_003901971.1| - 1.9e-05 24.8 3.7 0.023 14.9 1.4 3.5 2 1 1 3 3 2 1 Nucleopolyhedrovirus P10 protein Nsp1_C PF05064.8 gi|307595654|ref|YP_003901971.1| - 3.5e-05 23.4 2.2 0.068 12.8 0.2 2.9 1 1 2 3 3 3 2 Nsp1-like C-terminal region APG6 PF04111.7 gi|307595654|ref|YP_003901971.1| - 4.2e-05 22.7 0.3 6.4e-05 22.1 0.2 1.2 1 0 0 1 1 1 1 Autophagy protein Apg6 MAD PF05557.8 gi|307595654|ref|YP_003901971.1| - 4.3e-05 21.8 5.1 7.2e-05 21.1 3.3 1.4 1 1 0 1 1 1 1 Mitotic checkpoint protein Myosin_tail_1 PF01576.14 gi|307595654|ref|YP_003901971.1| - 4.3e-05 21.4 4.6 6e-05 20.9 3.2 1.1 1 0 0 1 1 1 1 Myosin tail IncA PF04156.9 gi|307595654|ref|YP_003901971.1| - 0.00011 21.9 6.6 0.043 13.4 0.2 2.5 1 1 1 2 2 2 2 IncA protein FliD_C PF07195.7 gi|307595654|ref|YP_003901971.1| - 0.00014 21.2 2.0 0.02 14.2 1.3 2.9 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus Nup54 PF13874.1 gi|307595654|ref|YP_003901971.1| - 0.00014 21.5 4.8 0.006 16.2 2.0 2.3 1 1 1 2 2 2 2 Nucleoporin complex subunit 54 MCPsignal PF00015.16 gi|307595654|ref|YP_003901971.1| - 0.00015 21.3 4.2 0.00015 21.3 2.9 1.9 1 1 0 2 2 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2730 PF10805.3 gi|307595654|ref|YP_003901971.1| - 0.00016 21.3 3.4 0.27 11.0 0.2 3.3 1 1 3 4 4 4 2 Protein of unknown function (DUF2730) Sec34 PF04136.10 gi|307595654|ref|YP_003901971.1| - 0.00017 21.2 2.5 0.044 13.4 0.4 2.6 2 1 1 3 3 2 1 Sec34-like family Dynamitin PF04912.9 gi|307595654|ref|YP_003901971.1| - 0.0003 19.7 9.9 0.077 11.7 3.5 3.2 1 1 1 2 2 2 1 Dynamitin DUF2802 PF10975.3 gi|307595654|ref|YP_003901971.1| - 0.00033 20.3 2.3 9.6 6.0 0.0 4.8 2 1 3 5 5 4 0 Protein of unknown function (DUF2802) Fmp27_WPPW PF10359.4 gi|307595654|ref|YP_003901971.1| - 0.00042 18.8 9.6 0.029 12.7 1.2 2.1 1 1 1 2 2 2 2 RNA pol II promoter Fmp27 protein domain Cast PF10174.4 gi|307595654|ref|YP_003901971.1| - 0.00049 18.3 5.3 0.00078 17.6 3.6 1.3 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone FliJ PF02050.11 gi|307595654|ref|YP_003901971.1| - 0.00049 20.1 0.2 0.039 13.9 0.0 2.3 1 1 1 2 2 2 1 Flagellar FliJ protein DUF2360 PF10152.4 gi|307595654|ref|YP_003901971.1| - 0.00051 20.3 1.8 3.8 7.7 0.1 3.9 2 1 1 3 3 2 0 Predicted coiled-coil domain-containing protein (DUF2360) WASH_WAHD PF11945.3 gi|307595654|ref|YP_003901971.1| - 0.00055 19.3 13.8 0.082 12.1 0.8 3.1 1 1 2 3 3 3 2 WAHD domain of WASH complex Tektin PF03148.9 gi|307595654|ref|YP_003901971.1| - 0.00056 18.5 5.1 0.056 11.9 0.5 2.2 1 1 1 2 2 2 2 Tektin family DUF869 PF05911.6 gi|307595654|ref|YP_003901971.1| - 0.00057 18.2 0.4 0.0011 17.2 0.3 1.5 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Syntaxin PF00804.20 gi|307595654|ref|YP_003901971.1| - 0.00073 19.6 8.9 0.00073 19.6 6.2 2.8 2 1 1 3 3 2 1 Syntaxin DUF3584 PF12128.3 gi|307595654|ref|YP_003901971.1| - 0.00081 16.8 1.2 0.00081 16.8 0.8 1.3 2 0 0 2 2 1 1 Protein of unknown function (DUF3584) TBPIP PF07106.8 gi|307595654|ref|YP_003901971.1| - 0.00098 18.7 9.4 0.048 13.2 2.0 2.6 2 1 1 3 3 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ERM PF00769.14 gi|307595654|ref|YP_003901971.1| - 0.0011 18.6 0.1 0.0018 17.8 0.1 1.4 1 1 0 1 1 1 1 Ezrin/radixin/moesin family COG2 PF06148.6 gi|307595654|ref|YP_003901971.1| - 0.0011 18.8 3.0 0.25 11.1 0.1 3.0 2 1 1 3 3 2 1 COG (conserved oligomeric Golgi) complex component, COG2 APG17 PF04108.7 gi|307595654|ref|YP_003901971.1| - 0.0013 17.6 5.1 0.079 11.7 0.7 2.1 1 1 1 2 2 2 1 Autophagy protein Apg17 Allexi_40kDa PF05549.6 gi|307595654|ref|YP_003901971.1| - 0.0016 17.7 1.1 0.028 13.7 0.4 2.1 1 1 1 2 2 2 1 Allexivirus 40kDa protein Flagellin_C PF00700.16 gi|307595654|ref|YP_003901971.1| - 0.0019 18.3 5.9 0.26 11.4 0.8 3.3 1 1 2 3 3 3 1 Bacterial flagellin C-terminal helical region DUF3552 PF12072.3 gi|307595654|ref|YP_003901971.1| - 0.0025 17.0 8.8 0.21 10.7 2.2 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) GAS PF13851.1 gi|307595654|ref|YP_003901971.1| - 0.0025 17.0 5.0 0.31 10.2 0.1 2.2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding COG6 PF06419.6 gi|307595654|ref|YP_003901971.1| - 0.0025 16.0 6.1 0.41 8.7 1.9 2.4 1 1 1 2 2 2 2 Conserved oligomeric complex COG6 FadA PF09403.5 gi|307595654|ref|YP_003901971.1| - 0.0031 17.5 1.0 0.047 13.6 0.5 2.7 1 1 0 1 1 1 1 Adhesion protein FadA Spectrin PF00435.16 gi|307595654|ref|YP_003901971.1| - 0.0039 17.4 1.0 0.017 15.4 0.1 2.5 2 1 0 2 2 1 1 Spectrin repeat DUF4164 PF13747.1 gi|307595654|ref|YP_003901971.1| - 0.0042 17.1 11.5 0.15 12.2 5.3 3.2 1 1 2 3 3 3 1 Domain of unknown function (DUF4164) Matrilin_ccoil PF10393.4 gi|307595654|ref|YP_003901971.1| - 0.0043 16.3 2.9 7.4 6.0 0.0 4.1 1 1 3 5 5 5 0 Trimeric coiled-coil oligomerisation domain of matrilin IFT57 PF10498.4 gi|307595654|ref|YP_003901971.1| - 0.0047 15.7 8.0 0.0076 15.0 5.2 1.6 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 DUF972 PF06156.8 gi|307595654|ref|YP_003901971.1| - 0.0048 17.2 5.0 0.14 12.4 0.3 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF972) STAT_alpha PF01017.15 gi|307595654|ref|YP_003901971.1| - 0.0051 16.5 3.5 1.3 8.7 0.3 3.6 1 1 2 3 3 3 0 STAT protein, all-alpha domain KCNQ_channel PF03520.9 gi|307595654|ref|YP_003901971.1| - 0.0055 16.0 5.0 6 6.1 0.5 4.1 1 1 2 3 3 3 0 KCNQ voltage-gated potassium channel Ax_dynein_light PF10211.4 gi|307595654|ref|YP_003901971.1| - 0.0056 16.5 7.2 0.34 10.7 0.7 3.0 1 1 2 3 3 3 1 Axonemal dynein light chain HOOK PF05622.7 gi|307595654|ref|YP_003901971.1| - 0.0074 14.1 1.4 0.01 13.6 1.0 1.2 1 0 0 1 1 1 1 HOOK protein Sipho_Gp157 PF05565.6 gi|307595654|ref|YP_003901971.1| - 0.0078 15.8 14.2 0.14 11.7 1.6 2.7 2 1 2 4 4 3 3 Siphovirus Gp157 DUF812 PF05667.6 gi|307595654|ref|YP_003901971.1| - 0.0096 14.4 7.9 0.21 10.0 0.9 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF812) DUF2959 PF11172.3 gi|307595654|ref|YP_003901971.1| - 0.012 15.3 4.4 0.85 9.3 0.1 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) BRE1 PF08647.6 gi|307595654|ref|YP_003901971.1| - 0.013 15.4 0.9 0.038 13.9 0.2 2.0 2 0 0 2 2 1 0 BRE1 E3 ubiquitin ligase DUF4200 PF13863.1 gi|307595654|ref|YP_003901971.1| - 0.013 15.4 8.6 0.033 14.1 4.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF677 PF05055.7 gi|307595654|ref|YP_003901971.1| - 0.013 14.1 4.4 0.03 13.0 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF677) phiKZ_IP PF12699.2 gi|307595654|ref|YP_003901971.1| - 0.013 14.4 7.9 0.58 9.0 0.2 3.1 2 1 1 3 3 2 0 phiKZ-like phage internal head proteins CALCOCO1 PF07888.6 gi|307595654|ref|YP_003901971.1| - 0.014 13.6 3.6 0.021 13.1 2.5 1.2 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like V-SNARE_C PF12352.3 gi|307595654|ref|YP_003901971.1| - 0.014 15.4 6.5 2.1 8.4 0.0 4.1 1 1 3 4 4 4 0 Snare region anchored in the vesicle membrane C-terminus Mnd1 PF03962.10 gi|307595654|ref|YP_003901971.1| - 0.019 14.6 4.5 0.13 11.8 1.9 2.6 2 1 0 2 2 1 0 Mnd1 family Prefoldin PF02996.12 gi|307595654|ref|YP_003901971.1| - 0.022 14.3 6.0 0.72 9.5 0.2 3.8 1 1 3 4 4 4 0 Prefoldin subunit FH2 PF02181.18 gi|307595654|ref|YP_003901971.1| - 0.023 13.5 0.2 2.3 6.9 0.0 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain Fungal_trans_2 PF11951.3 gi|307595654|ref|YP_003901971.1| - 0.024 13.2 1.0 0.1 11.1 0.7 2.0 1 1 0 1 1 1 0 Fungal specific transcription factor domain ORF6C PF10552.4 gi|307595654|ref|YP_003901971.1| - 0.026 14.2 9.2 3.3 7.4 0.1 4.2 1 1 3 4 4 4 0 ORF6C domain Vps5 PF09325.5 gi|307595654|ref|YP_003901971.1| - 0.026 13.7 3.0 0.48 9.6 0.2 2.7 1 1 0 2 2 2 0 Vps5 C terminal like DUF3847 PF12958.2 gi|307595654|ref|YP_003901971.1| - 0.027 14.2 6.3 7 6.4 0.7 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF3847) Phasin PF05597.6 gi|307595654|ref|YP_003901971.1| - 0.03 14.0 4.9 0.74 9.5 2.0 2.8 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PTRF_SDPR PF15237.1 gi|307595654|ref|YP_003901971.1| - 0.031 13.6 3.5 0.078 12.3 1.8 1.9 1 1 1 2 2 2 0 PTRF/SDPR family Vps51 PF08700.6 gi|307595654|ref|YP_003901971.1| - 0.033 14.0 0.7 12 5.8 0.0 3.6 1 1 1 3 3 3 0 Vps51/Vps67 EMP24_GP25L PF01105.19 gi|307595654|ref|YP_003901971.1| - 0.034 13.8 7.0 2.9 7.5 2.2 3.0 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD ATG16 PF08614.6 gi|307595654|ref|YP_003901971.1| - 0.035 13.9 10.5 0.23 11.2 2.1 2.5 2 1 1 3 3 2 0 Autophagy protein 16 (ATG16) Flagellin_N PF00669.15 gi|307595654|ref|YP_003901971.1| - 0.036 13.8 0.2 0.14 11.9 0.1 1.9 1 1 1 2 2 1 0 Bacterial flagellin N-terminal helical region DUF1202 PF06717.6 gi|307595654|ref|YP_003901971.1| - 0.036 13.3 5.1 1.7 7.8 0.9 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1202) MtrG PF04210.8 gi|307595654|ref|YP_003901971.1| - 0.036 13.7 17.1 11 5.8 5.5 4.9 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Lebercilin PF15619.1 gi|307595654|ref|YP_003901971.1| - 0.038 13.4 1.6 0.07 12.5 1.1 1.4 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF2935 PF11155.3 gi|307595654|ref|YP_003901971.1| - 0.038 14.0 1.4 1.7 8.7 1.0 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) HsbA PF12296.3 gi|307595654|ref|YP_003901971.1| - 0.041 13.7 0.5 2.9 7.7 0.0 3.3 2 1 2 4 4 3 0 Hydrophobic surface binding protein A Tho2 PF11262.3 gi|307595654|ref|YP_003901971.1| - 0.041 12.9 3.5 1.7 7.6 2.4 2.3 1 1 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Med9 PF07544.8 gi|307595654|ref|YP_003901971.1| - 0.043 13.5 14.2 0.051 13.3 2.7 3.2 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF2400 PF09674.5 gi|307595654|ref|YP_003901971.1| - 0.043 13.4 1.4 1 9.0 0.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2400) DASH_Spc19 PF08287.6 gi|307595654|ref|YP_003901971.1| - 0.047 13.2 2.8 4.4 6.8 0.1 2.6 1 1 1 2 2 2 0 Spc19 PEARLI-4 PF05278.7 gi|307595654|ref|YP_003901971.1| - 0.047 13.0 4.4 1.3 8.3 0.3 2.8 1 1 2 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) Occludin_ELL PF07303.8 gi|307595654|ref|YP_003901971.1| - 0.048 14.4 4.4 1.4 9.7 0.1 3.5 2 2 1 3 3 2 0 Occludin homology domain Macoilin PF09726.4 gi|307595654|ref|YP_003901971.1| - 0.055 11.7 0.9 0.084 11.1 0.6 1.2 1 0 0 1 1 1 0 Transmembrane protein FemAB PF02388.11 gi|307595654|ref|YP_003901971.1| - 0.056 12.1 1.4 0.68 8.5 1.0 2.0 1 1 0 1 1 1 0 FemAB family Transposase_22 PF02994.9 gi|307595654|ref|YP_003901971.1| - 0.059 11.8 21.4 4.5 5.6 7.5 3.3 1 1 1 2 2 2 0 L1 transposable element DUF489 PF04356.7 gi|307595654|ref|YP_003901971.1| - 0.063 12.8 1.4 1.5 8.3 0.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF489) Sec3_C PF09763.4 gi|307595654|ref|YP_003901971.1| - 0.066 11.3 3.8 0.4 8.7 1.9 2.2 1 1 1 2 2 2 0 Exocyst complex component Sec3 PspA_IM30 PF04012.7 gi|307595654|ref|YP_003901971.1| - 0.069 12.4 0.6 5.5 6.2 0.1 2.3 1 1 1 2 2 2 0 PspA/IM30 family Sugarporin_N PF11471.3 gi|307595654|ref|YP_003901971.1| - 0.07 12.7 11.6 1.4 8.6 0.0 5.2 2 1 5 7 7 6 0 Maltoporin periplasmic N-terminal extension TMF_DNA_bd PF12329.3 gi|307595654|ref|YP_003901971.1| - 0.077 12.8 5.1 1.2 8.9 0.4 2.9 1 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Vps53_N PF04100.7 gi|307595654|ref|YP_003901971.1| - 0.079 11.7 7.4 0.19 10.4 4.9 1.7 1 1 1 2 2 2 0 Vps53-like, N-terminal Med4 PF10018.4 gi|307595654|ref|YP_003901971.1| - 0.079 12.3 5.3 4.5 6.6 2.5 3.3 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 COG5 PF10392.4 gi|307595654|ref|YP_003901971.1| - 0.082 12.8 1.6 1.1 9.2 0.3 2.9 1 1 2 4 4 2 0 Golgi transport complex subunit 5 DUF1978 PF09321.5 gi|307595654|ref|YP_003901971.1| - 0.087 12.2 9.3 0.022 14.2 2.7 2.5 2 1 0 2 2 1 0 Domain of unknown function (DUF1978) DUF2721 PF11026.3 gi|307595654|ref|YP_003901971.1| - 0.088 12.4 8.6 0.74 9.4 0.6 3.2 2 1 0 3 3 2 0 Protein of unknown function (DUF2721) Herpes_U30 PF04523.8 gi|307595654|ref|YP_003901971.1| - 0.09 10.2 0.9 0.21 9.0 0.6 1.6 1 1 0 1 1 1 0 Herpes virus tegument protein U30 HrpB7 PF09486.5 gi|307595654|ref|YP_003901971.1| - 0.094 12.6 0.5 3.6 7.4 0.1 2.1 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF948 PF06103.6 gi|307595654|ref|YP_003901971.1| - 0.094 12.5 0.1 12 5.8 0.0 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) PspB PF06667.7 gi|307595654|ref|YP_003901971.1| - 0.1 12.5 9.4 8.8 6.3 0.4 4.7 1 1 3 4 4 4 0 Phage shock protein B Uds1 PF15456.1 gi|307595654|ref|YP_003901971.1| - 0.1 12.5 2.6 9.2 6.2 0.1 3.2 1 1 2 3 3 3 0 Up-regulated During Septation HR1 PF02185.11 gi|307595654|ref|YP_003901971.1| - 0.12 12.1 4.1 2.7 7.7 0.5 3.2 1 1 1 2 2 2 0 Hr1 repeat LXG PF04740.7 gi|307595654|ref|YP_003901971.1| - 0.12 12.1 4.6 0.37 10.5 2.4 2.2 1 1 1 2 2 2 0 LXG domain of WXG superfamily TMPIT PF07851.8 gi|307595654|ref|YP_003901971.1| - 0.14 11.2 1.3 0.26 10.3 0.9 1.6 1 1 0 1 1 1 0 TMPIT-like protein Fzo_mitofusin PF04799.8 gi|307595654|ref|YP_003901971.1| - 0.17 11.2 4.3 1.8 7.9 0.6 2.8 1 1 1 2 2 2 0 fzo-like conserved region Hemagglutinin PF00509.13 gi|307595654|ref|YP_003901971.1| - 0.18 9.8 17.2 0.12 10.4 2.1 2.8 1 1 1 2 2 2 0 Haemagglutinin Ring_hydroxyl_B PF00866.13 gi|307595654|ref|YP_003901971.1| - 0.22 11.2 5.5 1.3 8.7 0.9 3.0 1 1 1 2 2 2 0 Ring hydroxylating beta subunit ISG65-75 PF11727.3 gi|307595654|ref|YP_003901971.1| - 0.23 10.4 3.9 2.1 7.3 2.7 2.2 1 1 0 1 1 1 0 Invariant surface glycoprotein Cauli_AT PF03233.8 gi|307595654|ref|YP_003901971.1| - 0.26 11.0 12.5 1.3e+02 2.2 8.6 3.0 1 1 1 2 2 2 0 Aphid transmission protein CorA PF01544.13 gi|307595654|ref|YP_003901971.1| - 0.31 10.0 16.4 0.094 11.7 5.9 2.8 1 1 3 4 4 4 0 CorA-like Mg2+ transporter protein SLIDE PF09111.5 gi|307595654|ref|YP_003901971.1| - 0.38 10.4 8.9 0.16 11.6 0.4 3.0 1 1 1 3 3 3 0 SLIDE Jnk-SapK_ap_N PF09744.4 gi|307595654|ref|YP_003901971.1| - 0.4 10.6 7.6 5.1 7.0 2.2 2.5 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Hormone_1 PF00103.15 gi|307595654|ref|YP_003901971.1| - 0.48 9.7 1.9 2 7.6 0.3 2.2 1 1 1 2 2 2 0 Somatotropin hormone family Paralemmin PF03285.10 gi|307595654|ref|YP_003901971.1| - 0.72 9.2 5.4 3.1 7.2 0.7 2.3 1 1 1 2 2 2 0 Paralemmin MIF4G_like_2 PF09090.6 gi|307595654|ref|YP_003901971.1| - 0.75 8.9 10.8 0.38 9.9 1.5 2.2 1 1 1 2 2 2 0 MIF4G like bZIP_2 PF07716.10 gi|307595654|ref|YP_003901971.1| - 0.83 9.5 8.6 26 4.7 0.2 4.1 1 1 1 3 3 3 0 Basic region leucine zipper Syntaxin-6_N PF09177.6 gi|307595654|ref|YP_003901971.1| - 0.87 10.0 9.5 1 9.7 2.4 2.8 2 1 1 3 3 2 0 Syntaxin 6, N-terminal Noelin-1 PF12308.3 gi|307595654|ref|YP_003901971.1| - 1 9.1 3.7 11 5.9 0.3 2.8 2 1 2 4 4 3 0 Neurogenesis glycoprotein Sin3_corepress PF08295.7 gi|307595654|ref|YP_003901971.1| - 1.1 9.0 8.8 1.4 8.7 0.5 2.9 1 1 2 3 3 3 0 Sin3 family co-repressor CCDC-167 PF15188.1 gi|307595654|ref|YP_003901971.1| - 1.2 9.0 14.6 3.1 7.8 0.9 4.0 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 ATP-synt_B PF00430.13 gi|307595654|ref|YP_003901971.1| - 1.3 8.8 11.8 7.3 6.4 2.1 3.1 1 1 2 3 3 3 0 ATP synthase B/B' CF(0) DUF241 PF03087.9 gi|307595654|ref|YP_003901971.1| - 1.4 8.3 9.3 4 6.8 0.9 2.6 1 1 1 2 2 2 0 Arabidopsis protein of unknown function DUF4349 PF14257.1 gi|307595654|ref|YP_003901971.1| - 1.5 8.0 10.5 1 8.5 1.4 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) Prefoldin_3 PF13758.1 gi|307595654|ref|YP_003901971.1| - 1.5 8.6 24.7 3 7.6 1.7 4.3 1 1 3 4 4 4 0 Prefoldin subunit DUF724 PF05266.9 gi|307595654|ref|YP_003901971.1| - 1.6 8.2 4.8 9.9 5.7 2.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF724) Val_tRNA-synt_C PF10458.4 gi|307595654|ref|YP_003901971.1| - 1.9 8.6 5.1 27 4.9 0.1 3.7 1 1 3 4 4 4 0 Valyl tRNA synthetase tRNA binding arm DUF4238 PF14022.1 gi|307595654|ref|YP_003901971.1| - 2.1 7.5 18.0 4.7 6.3 0.4 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4238) DUF4600 PF15372.1 gi|307595654|ref|YP_003901971.1| - 2.1 8.5 6.1 0.86 9.8 1.8 2.2 2 1 0 2 2 1 0 Domain of unknown function (DUF4600) BRI3BP PF14965.1 gi|307595654|ref|YP_003901971.1| - 2.1 7.6 9.6 14 5.0 0.9 4.1 1 1 1 2 2 2 0 Negative regulator of p53/TP53 HSBP1 PF06825.7 gi|307595654|ref|YP_003901971.1| - 2.2 7.9 19.0 2.7 7.6 0.7 4.7 1 1 2 3 3 3 0 Heat shock factor binding protein 1 priB_priC PF07445.7 gi|307595654|ref|YP_003901971.1| - 2.3 7.6 11.4 3.3 7.1 0.4 3.6 1 1 3 4 4 4 0 Primosomal replication protein priB and priC Atg14 PF10186.4 gi|307595654|ref|YP_003901971.1| - 2.4 7.0 10.0 19 4.0 6.9 2.1 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 GreA_GreB_N PF03449.10 gi|307595654|ref|YP_003901971.1| - 2.4 8.2 23.8 76 3.4 0.1 6.6 2 1 4 6 6 6 0 Transcription elongation factor, N-terminal Bacillus_HBL PF05791.6 gi|307595654|ref|YP_003901971.1| - 2.9 7.2 7.4 3.4 6.9 0.5 3.0 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) Syntaxin_2 PF14523.1 gi|307595654|ref|YP_003901971.1| - 3 7.9 8.6 9.3 6.3 2.8 2.4 1 1 1 2 2 2 0 Syntaxin-like protein Trns_repr_metal PF02583.12 gi|307595654|ref|YP_003901971.1| - 3.2 8.0 9.1 5.2 7.3 1.5 2.9 1 1 0 2 2 2 0 Metal-sensitive transcriptional repressor DivIC PF04977.10 gi|307595654|ref|YP_003901971.1| - 4.6 6.8 12.6 15 5.1 0.1 3.5 2 1 2 4 4 3 0 Septum formation initiator Troponin PF00992.15 gi|307595654|ref|YP_003901971.1| - 7.1 6.7 9.0 4.2 7.4 4.3 1.9 1 1 1 2 2 2 0 Troponin PaREP1 PF05942.6 gi|307595655|ref|YP_003901972.1| - 4.9e-33 113.4 1.1 8.2e-33 112.7 0.1 1.7 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family Arch_ATPase PF01637.13 gi|307595656|ref|YP_003901973.1| - 4.5e-57 193.4 0.0 5.9e-57 193.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|307595656|ref|YP_003901973.1| - 0.0022 18.1 0.0 0.0064 16.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307595656|ref|YP_003901973.1| - 0.0055 16.8 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307595656|ref|YP_003901973.1| - 0.0082 16.1 0.0 0.033 14.1 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|307595656|ref|YP_003901973.1| - 0.014 15.0 0.0 0.047 13.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain DAP3 PF10236.4 gi|307595656|ref|YP_003901973.1| - 0.03 13.2 0.0 0.087 11.7 0.0 1.8 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_14 PF13173.1 gi|307595656|ref|YP_003901973.1| - 0.043 13.7 0.0 0.089 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|307595656|ref|YP_003901973.1| - 0.083 11.5 0.0 3.3 6.2 0.0 2.1 1 1 1 2 2 2 0 Adenovirus IVa2 protein DEDD_Tnp_IS110 PF01548.12 gi|307595656|ref|YP_003901973.1| - 0.092 12.4 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Transposase AAA_30 PF13604.1 gi|307595656|ref|YP_003901973.1| - 0.13 11.8 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Glycos_transf_1 PF00534.15 gi|307595657|ref|YP_003901974.1| - 5.9e-16 58.3 0.0 1.5e-15 57.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307595657|ref|YP_003901974.1| - 4.1e-06 26.9 0.0 2.5e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|307595657|ref|YP_003901974.1| - 2.5e-05 24.0 0.0 4.8e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|307595657|ref|YP_003901974.1| - 6.4e-05 23.1 0.0 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF2079 PF09852.4 gi|307595658|ref|YP_003901975.1| - 3.2e-30 105.2 45.2 3.2e-30 105.2 31.3 3.4 3 1 0 3 3 3 1 Predicted membrane protein (DUF2079) Methyltransf_21 PF05050.7 gi|307595659|ref|YP_003901976.1| - 3.5e-21 75.8 0.4 4.7e-21 75.4 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|307595659|ref|YP_003901976.1| - 1.4e-06 28.0 0.7 2.2e-06 27.4 0.5 1.5 1 1 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.6 gi|307595659|ref|YP_003901976.1| - 1.9e-06 27.1 2.0 3.1e-06 26.4 1.4 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltransf_18 PF12847.2 gi|307595659|ref|YP_003901976.1| - 1.2e-05 25.8 0.1 1.8e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF4525 PF15027.1 gi|307595659|ref|YP_003901976.1| - 0.04 13.4 0.0 0.082 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4525) Methyltransf_16 PF10294.4 gi|307595659|ref|YP_003901976.1| - 0.085 12.3 0.1 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 Putative methyltransferase MTS PF05175.9 gi|307595659|ref|YP_003901976.1| - 0.094 12.0 0.1 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Glycos_transf_2 PF00535.21 gi|307595661|ref|YP_003901978.1| - 3.3e-07 30.1 0.1 5.8e-07 29.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|307595662|ref|YP_003901979.1| - 5.1e-14 52.0 0.0 8.9e-14 51.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|307595662|ref|YP_003901979.1| - 8.1e-11 42.2 0.0 1.6e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 HHH_4 PF14490.1 gi|307595662|ref|YP_003901979.1| - 0.042 13.6 0.0 0.15 11.8 0.0 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix containing domain CmcH_NodU PF02543.10 gi|307595663|ref|YP_003901980.1| - 5.6e-86 288.9 0.2 3.4e-85 286.3 0.1 1.9 1 1 0 1 1 1 1 Carbamoyltransferase Sua5_yciO_yrdC PF01300.13 gi|307595663|ref|YP_003901980.1| - 0.07 12.3 0.0 0.18 11.0 0.0 1.7 1 1 0 1 1 1 0 Telomere recombination HTH_39 PF14090.1 gi|307595665|ref|YP_003901982.1| - 0.18 11.2 0.6 0.62 9.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2283 PF10049.4 gi|307595667|ref|YP_003901984.1| - 0.021 14.6 0.4 0.027 14.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Fib_alpha PF08702.5 gi|307595670|ref|YP_003901987.1| - 0.11 12.6 0.4 0.17 12.0 0.3 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family HEPN PF05168.9 gi|307595671|ref|YP_003901988.1| - 8e-32 109.5 0.1 9.2e-32 109.4 0.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|307595671|ref|YP_003901988.1| - 0.00029 20.8 1.0 0.00076 19.4 0.4 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) PaREP1 PF05942.6 gi|307595671|ref|YP_003901988.1| - 0.00031 20.6 0.1 0.00048 19.9 0.0 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Ribosomal_L30_N PF08079.7 gi|307595671|ref|YP_003901988.1| - 0.047 13.6 0.4 0.098 12.6 0.3 1.6 1 0 0 1 1 1 0 Ribosomal L30 N-terminal domain Ribonuc_2-5A PF06479.7 gi|307595671|ref|YP_003901988.1| - 0.1 12.4 0.1 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease 2-5A Bclx_interact PF08945.5 gi|307595671|ref|YP_003901988.1| - 0.14 11.7 0.1 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain PSD3 PF07626.6 gi|307595671|ref|YP_003901988.1| - 0.18 11.8 2.4 0.23 11.4 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1587) TPR_2 PF07719.12 gi|307595671|ref|YP_003901988.1| - 0.26 11.2 5.3 0.71 9.9 1.2 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|307595672|ref|YP_003901989.1| - 2.4e-07 30.9 0.0 3.4e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain OppC_N PF12911.2 gi|307595674|ref|YP_003901991.1| - 0.0046 16.2 0.1 0.0046 16.2 0.0 2.6 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C Serpulina_VSP PF05540.6 gi|307595675|ref|YP_003901992.1| - 0.011 14.4 0.1 0.013 14.2 0.1 1.3 1 1 0 1 1 1 0 Serpulina hyodysenteriae variable surface protein Proteasome PF00227.21 gi|307595676|ref|YP_003901993.1| - 1e-49 168.3 0.3 1.2e-49 168.1 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit ThiI PF02568.9 gi|307595677|ref|YP_003901994.1| - 8.5e-55 185.2 0.0 1.2e-54 184.7 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|307595677|ref|YP_003901994.1| - 8e-23 80.9 0.4 1.5e-22 80.0 0.3 1.5 1 0 0 1 1 1 1 THUMP domain Rhodanese PF00581.15 gi|307595677|ref|YP_003901994.1| - 2.8e-10 40.5 0.0 6.4e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain QueC PF06508.8 gi|307595677|ref|YP_003901994.1| - 0.0034 16.6 0.0 1.4 8.1 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Endonuclease_5 PF04493.9 gi|307595678|ref|YP_003901995.1| - 9.7e-46 155.7 0.0 1.3e-45 155.2 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V GTPase_Cys_C PF12631.2 gi|307595679|ref|YP_003901996.1| - 0.032 14.6 0.0 0.17 12.2 0.0 1.9 2 0 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Complex1_LYR PF05347.10 gi|307595680|ref|YP_003901997.1| - 0.073 12.8 0.2 4.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Complex 1 protein (LYR family) AA_permease PF00324.16 gi|307595681|ref|YP_003901998.1| - 2.8e-33 114.9 45.2 2.8e-33 114.9 31.3 2.2 1 1 1 2 2 2 1 Amino acid permease AA_permease_2 PF13520.1 gi|307595681|ref|YP_003901998.1| - 1.2e-30 106.4 52.3 1.2e-30 106.4 36.3 2.0 1 1 1 2 2 2 1 Amino acid permease Thioredoxin_3 PF13192.1 gi|307595682|ref|YP_003901999.1| - 1.9e-05 24.3 0.1 4.2e-05 23.2 0.0 1.5 2 0 0 2 2 2 1 Thioredoxin domain DUF2427 PF10348.4 gi|307595683|ref|YP_003902000.1| - 0.03 13.8 4.4 0.048 13.2 3.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) DUF4131 PF13567.1 gi|307595683|ref|YP_003902000.1| - 0.59 9.5 4.7 1 8.7 3.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) zf-DHHC PF01529.15 gi|307595683|ref|YP_003902000.1| - 0.61 9.4 3.6 0.93 8.8 2.5 1.4 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF202 PF02656.10 gi|307595683|ref|YP_003902000.1| - 5.5 7.2 7.3 6.7 7.0 1.8 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF202) SieB PF14163.1 gi|307595683|ref|YP_003902000.1| - 6.1 6.4 5.9 8.9 5.8 0.1 2.1 2 0 0 2 2 2 0 Superinfection exclusion protein B YwiC PF14256.1 gi|307595683|ref|YP_003902000.1| - 7.5 6.6 11.7 2 8.5 5.4 1.8 1 1 1 2 2 2 0 YwiC-like protein Band_7 PF01145.20 gi|307595684|ref|YP_003902001.1| - 2.1e-20 73.3 1.6 3.2e-20 72.7 1.1 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|307595684|ref|YP_003902001.1| - 3.8e-16 59.2 0.5 6.3e-16 58.5 0.4 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family PilZ PF07238.9 gi|307595684|ref|YP_003902001.1| - 0.054 13.5 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 PilZ domain FAA_hydrolase_N PF09298.6 gi|307595684|ref|YP_003902001.1| - 0.082 12.9 0.1 1.6 8.7 0.0 2.2 1 1 1 2 2 2 0 Fumarylacetoacetase N-terminal PaREP1 PF05942.6 gi|307595686|ref|YP_003902003.1| - 4.1e-27 94.3 0.1 6.3e-27 93.7 0.1 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family ABC_tran PF00005.22 gi|307595687|ref|YP_003902004.1| - 2.4e-26 92.6 0.0 3.6e-26 92.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307595687|ref|YP_003902004.1| - 7.7e-12 45.7 0.0 3.8e-06 27.0 0.1 2.3 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|307595687|ref|YP_003902004.1| - 1.9e-08 34.9 0.2 3.5e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|307595687|ref|YP_003902004.1| - 2.3e-08 33.5 0.2 7.2e-05 22.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|307595687|ref|YP_003902004.1| - 3.4e-06 26.4 0.0 6e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|307595687|ref|YP_003902004.1| - 0.00057 19.0 0.0 0.0014 17.7 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|307595687|ref|YP_003902004.1| - 0.00072 19.2 0.1 0.0016 18.1 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|307595687|ref|YP_003902004.1| - 0.0018 17.6 0.2 0.0054 16.1 0.1 1.8 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|307595687|ref|YP_003902004.1| - 0.0048 16.5 0.1 0.0085 15.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|307595687|ref|YP_003902004.1| - 0.0066 17.2 0.1 0.013 16.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|307595687|ref|YP_003902004.1| - 0.007 15.2 0.1 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|307595687|ref|YP_003902004.1| - 0.0074 15.7 0.1 0.058 12.8 0.0 2.2 2 1 1 3 3 3 1 AAA-like domain cobW PF02492.14 gi|307595687|ref|YP_003902004.1| - 0.0077 15.6 0.8 0.022 14.2 0.1 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.1 gi|307595687|ref|YP_003902004.1| - 0.0082 14.6 0.0 0.018 13.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF3584 PF12128.3 gi|307595687|ref|YP_003902004.1| - 0.0084 13.5 0.1 0.011 13.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_28 PF13521.1 gi|307595687|ref|YP_003902004.1| - 0.0086 16.0 0.0 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|307595687|ref|YP_003902004.1| - 0.0094 15.6 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase ASL_C2 PF14698.1 gi|307595687|ref|YP_003902004.1| - 0.012 15.7 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal AAA_33 PF13671.1 gi|307595687|ref|YP_003902004.1| - 0.014 15.2 0.0 0.024 14.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|307595687|ref|YP_003902004.1| - 0.016 15.1 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|307595687|ref|YP_003902004.1| - 0.018 14.7 0.0 0.065 12.9 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.4 gi|307595687|ref|YP_003902004.1| - 0.02 13.5 0.3 0.03 12.9 0.2 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|307595687|ref|YP_003902004.1| - 0.022 14.9 0.1 0.066 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|307595687|ref|YP_003902004.1| - 0.026 14.7 0.2 0.068 13.3 0.0 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|307595687|ref|YP_003902004.1| - 0.027 13.6 0.0 0.04 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MutS_V PF00488.16 gi|307595687|ref|YP_003902004.1| - 0.028 13.8 0.0 0.097 12.0 0.0 1.7 2 0 0 2 2 2 0 MutS domain V HTH_39 PF14090.1 gi|307595687|ref|YP_003902004.1| - 0.042 13.3 0.1 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Miro PF08477.8 gi|307595687|ref|YP_003902004.1| - 0.062 13.7 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|307595687|ref|YP_003902004.1| - 0.064 13.1 0.1 0.15 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|307595687|ref|YP_003902004.1| - 0.07 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|307595687|ref|YP_003902004.1| - 0.071 12.6 0.1 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|307595687|ref|YP_003902004.1| - 0.085 12.3 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family ATP-synt_ab PF00006.20 gi|307595687|ref|YP_003902004.1| - 0.13 11.7 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|307595687|ref|YP_003902004.1| - 0.38 11.0 1.9 0.52 10.6 0.1 2.1 2 2 0 2 2 2 0 AAA domain DUF1628 PF07790.6 gi|307595689|ref|YP_003902006.1| - 0.54 11.0 2.5 0.38 11.5 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) UPF0016 PF01169.14 gi|307595689|ref|YP_003902006.1| - 1.1 9.4 10.8 0.79 9.9 1.5 2.6 2 1 0 2 2 2 0 Uncharacterized protein family UPF0016 PaREP1 PF05942.6 gi|307595690|ref|YP_003902007.1| - 2.8e-29 101.3 0.6 3.6e-29 100.9 0.4 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Cupin_2 PF07883.6 gi|307595691|ref|YP_003902008.1| - 2.8e-21 74.7 0.0 3.7e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|307595691|ref|YP_003902008.1| - 3.6e-12 46.1 0.0 4e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|307595691|ref|YP_003902008.1| - 5.3e-10 39.1 0.0 7e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|307595691|ref|YP_003902008.1| - 1.2e-07 31.2 0.0 1.7e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Cupin Auxin_BP PF02041.11 gi|307595691|ref|YP_003902008.1| - 1.9e-07 30.6 0.1 6.8e-07 28.8 0.0 1.8 1 1 0 1 1 1 1 Auxin binding protein Ectoine_synth PF06339.7 gi|307595691|ref|YP_003902008.1| - 0.00054 19.8 0.0 0.00061 19.7 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_7 PF12973.2 gi|307595691|ref|YP_003902008.1| - 0.00071 19.3 0.0 0.00095 18.9 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain GPI PF06560.6 gi|307595691|ref|YP_003902008.1| - 0.0075 15.3 0.0 0.013 14.5 0.0 1.4 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_3 PF05899.7 gi|307595691|ref|YP_003902008.1| - 0.01 15.1 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|307595691|ref|YP_003902008.1| - 0.018 14.6 0.0 0.022 14.3 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_6 PF12852.2 gi|307595691|ref|YP_003902008.1| - 0.018 14.6 0.0 0.021 14.4 0.0 1.1 1 0 0 1 1 1 0 Cupin DUF2530 PF10745.4 gi|307595692|ref|YP_003902009.1| - 0.017 15.0 0.5 0.033 14.1 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) DUF2306 PF10067.4 gi|307595692|ref|YP_003902009.1| - 0.027 14.5 0.5 0.037 14.1 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2306) NnrS PF05940.7 gi|307595692|ref|YP_003902009.1| - 0.065 12.1 3.6 0.085 11.7 2.5 1.1 1 0 0 1 1 1 0 NnrS protein DUF4282 PF14110.1 gi|307595692|ref|YP_003902009.1| - 0.14 12.3 5.0 0.23 11.7 3.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF1003 PF06210.6 gi|307595692|ref|YP_003902009.1| - 0.95 9.4 3.8 1.6 8.7 2.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) DUF3317 PF11779.3 gi|307595692|ref|YP_003902009.1| - 5.2 6.5 7.9 0.55 9.7 1.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3317) MFS_1 PF07690.11 gi|307595693|ref|YP_003902010.1| - 0.065 11.9 5.7 0.1 11.3 4.0 1.3 1 0 0 1 1 1 0 Major Facilitator Superfamily NTP_transf_2 PF01909.18 gi|307595694|ref|YP_003902011.1| - 4.3e-11 42.9 1.3 6.1e-11 42.4 0.9 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|307595694|ref|YP_003902011.1| - 0.00012 22.1 0.0 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm HEPN PF05168.9 gi|307595695|ref|YP_003902012.1| - 2.6e-24 85.3 0.1 2.9e-24 85.2 0.1 1.0 1 0 0 1 1 1 1 HEPN domain DUF447 PF04289.7 gi|307595695|ref|YP_003902012.1| - 0.062 12.8 0.0 0.068 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF447) NTP_transf_2 PF01909.18 gi|307595696|ref|YP_003902013.1| - 2e-08 34.4 0.1 2.9e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Glyco_transf_9 PF01075.12 gi|307595696|ref|YP_003902013.1| - 0.059 12.5 0.0 0.081 12.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) DUF294 PF03445.8 gi|307595696|ref|YP_003902013.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|307595697|ref|YP_003902014.1| - 4.8e-32 110.3 0.5 5.4e-32 110.1 0.3 1.0 1 0 0 1 1 1 1 HEPN domain N1221 PF07923.8 gi|307595697|ref|YP_003902014.1| - 0.13 11.0 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 N1221-like protein MFS_1 PF07690.11 gi|307595698|ref|YP_003902015.1| - 3.3e-44 151.0 47.9 3.3e-44 151.0 33.2 2.3 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307595698|ref|YP_003902015.1| - 9.1e-13 47.5 5.7 9.1e-13 47.5 4.0 2.8 2 1 0 2 2 2 2 Sugar (and other) transporter DUF791 PF05631.9 gi|307595698|ref|YP_003902015.1| - 2.3e-06 26.5 0.3 7.3e-06 24.9 0.2 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF791) MFS_2 PF13347.1 gi|307595698|ref|YP_003902015.1| - 0.002 16.6 3.8 0.002 16.6 2.7 3.6 4 0 0 4 4 4 2 MFS/sugar transport protein OATP PF03137.15 gi|307595698|ref|YP_003902015.1| - 0.0021 16.1 15.6 0.21 9.6 0.8 3.4 2 1 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family SCP-1 PF05483.7 gi|307595699|ref|YP_003902016.1| - 0.022 12.5 0.4 0.023 12.5 0.3 1.0 1 0 0 1 1 1 0 Synaptonemal complex protein 1 (SCP-1) AAA_23 PF13476.1 gi|307595699|ref|YP_003902016.1| - 0.041 14.2 2.4 0.05 13.9 1.6 1.0 1 0 0 1 1 1 0 AAA domain DUF4061 PF13270.1 gi|307595699|ref|YP_003902016.1| - 0.12 12.4 0.2 0.14 12.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4061) Med9 PF07544.8 gi|307595699|ref|YP_003902016.1| - 0.13 12.0 3.3 0.23 11.2 2.3 1.4 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 NinG PF05766.7 gi|307595699|ref|YP_003902016.1| - 0.28 10.9 1.5 0.32 10.7 1.1 1.1 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein XhlA PF10779.4 gi|307595699|ref|YP_003902016.1| - 0.84 9.5 3.9 1 9.3 2.7 1.1 1 0 0 1 1 1 0 Haemolysin XhlA SUV3_C PF12513.3 gi|307595699|ref|YP_003902016.1| - 1.2 8.6 4.3 0.98 8.9 0.1 2.5 1 1 2 3 3 3 0 Mitochondrial degradasome RNA helicase subunit C terminal Glyco_hydro_1 PF00232.13 gi|307595700|ref|YP_003902017.1| - 1.6e-64 217.8 7.8 3e-57 193.8 2.5 3.0 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Glycos_transf_2 PF00535.21 gi|307595701|ref|YP_003902018.1| - 0.00046 19.9 0.0 0.00049 19.8 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferase family 2 YvfG PF09628.5 gi|307595702|ref|YP_003902019.1| - 0.0058 16.7 0.2 0.34 11.0 0.1 2.5 2 0 0 2 2 2 2 YvfG protein DUF4064 PF13273.1 gi|307595703|ref|YP_003902020.1| - 0.23 11.5 9.2 0.24 11.5 2.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) TPPK_C PF12555.3 gi|307595703|ref|YP_003902020.1| - 0.8 9.4 8.2 2 8.1 0.2 2.4 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Oxidored_q3 PF00499.15 gi|307595703|ref|YP_003902020.1| - 1.7 8.4 13.7 21 4.8 9.5 2.2 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF3671 PF12420.3 gi|307595703|ref|YP_003902020.1| - 1.7 8.6 7.4 7.6 6.5 2.3 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF3753 PF12575.3 gi|307595703|ref|YP_003902020.1| - 1.8 8.4 12.4 0.23 11.2 3.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) DUF912 PF06024.7 gi|307595703|ref|YP_003902020.1| - 4.1 7.5 8.5 0.53 10.3 1.4 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) ODV-E18 PF10717.4 gi|307595703|ref|YP_003902020.1| - 8.4 5.9 12.6 1.4 8.3 3.7 2.5 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 TPP_enzyme_C PF02775.16 gi|307595704|ref|YP_003902021.1| - 2.7e-30 104.9 0.0 3.5e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Methyltransf_26 PF13659.1 gi|307595704|ref|YP_003902021.1| - 0.086 12.8 0.0 0.35 10.8 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain Phage_holin_2 PF04550.7 gi|307595704|ref|YP_003902021.1| - 0.088 12.9 0.2 0.17 11.9 0.2 1.4 1 0 0 1 1 1 0 Phage holin family 2 Fer4 PF00037.22 gi|307595705|ref|YP_003902022.1| - 2.3e-11 42.7 15.0 8.1e-06 25.2 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|307595705|ref|YP_003902022.1| - 3.4e-09 36.9 6.4 0.0004 20.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307595705|ref|YP_003902022.1| - 4.6e-09 35.6 12.9 0.00014 21.5 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|307595705|ref|YP_003902022.1| - 9.1e-09 34.8 14.4 0.00026 20.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307595705|ref|YP_003902022.1| - 2.3e-08 33.6 19.8 4.4e-06 26.3 7.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307595705|ref|YP_003902022.1| - 1.5e-07 31.1 6.9 0.0017 18.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307595705|ref|YP_003902022.1| - 3.6e-07 30.3 10.7 1.6e-06 28.3 7.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|307595705|ref|YP_003902022.1| - 4e-07 29.9 5.8 0.0054 16.7 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307595705|ref|YP_003902022.1| - 6.3e-06 26.8 8.0 0.013 16.2 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|307595705|ref|YP_003902022.1| - 1.8e-05 24.6 13.4 0.0025 18.0 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|307595705|ref|YP_003902022.1| - 5.4e-05 23.5 7.2 0.033 14.5 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307595705|ref|YP_003902022.1| - 5.7e-05 23.6 9.9 0.0022 18.5 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|307595705|ref|YP_003902022.1| - 0.00018 21.7 10.3 0.09 13.1 7.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307595705|ref|YP_003902022.1| - 0.00063 20.0 9.5 0.045 14.1 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|307595705|ref|YP_003902022.1| - 0.0025 18.2 15.0 0.051 14.1 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain zf-ISL3 PF14690.1 gi|307595705|ref|YP_003902022.1| - 0.061 13.3 0.4 0.061 13.3 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FrhB_FdhB_C PF04432.8 gi|307595705|ref|YP_003902022.1| - 1.8 7.9 5.4 0.15 11.4 0.4 1.6 1 1 1 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Fer4_19 PF06902.6 gi|307595705|ref|YP_003902022.1| - 5.6 6.8 6.6 1.1 9.1 1.2 2.1 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster POR PF01558.13 gi|307595706|ref|YP_003902023.1| - 1.6e-22 80.2 0.0 2e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase CBS PF00571.23 gi|307595707|ref|YP_003902024.1| - 1.5e-26 91.8 2.3 4.5e-14 51.9 0.5 2.2 2 0 0 2 2 2 2 CBS domain DUF3659 PF12396.3 gi|307595707|ref|YP_003902024.1| - 0.41 10.3 2.1 17 5.2 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) ECH PF00378.15 gi|307595708|ref|YP_003902025.1| - 4.8e-44 150.3 0.0 5.5e-44 150.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Peptidase_S49 PF01343.13 gi|307595708|ref|YP_003902025.1| - 0.041 13.6 0.0 0.66 9.7 0.0 2.1 2 0 0 2 2 2 0 Peptidase family S49 FAD_binding_4 PF01565.18 gi|307595709|ref|YP_003902026.1| - 8e-40 135.5 0.2 1.8e-39 134.3 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain FAD-oxidase_C PF02913.14 gi|307595709|ref|YP_003902026.1| - 7.3e-31 107.3 0.2 9.5e-31 106.9 0.1 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain Abhydrolase_6 PF12697.2 gi|307595710|ref|YP_003902027.1| - 1.3e-15 57.9 0.0 1.7e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|307595710|ref|YP_003902027.1| - 2.4e-10 40.3 0.0 3e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|307595710|ref|YP_003902027.1| - 1.1e-07 31.6 0.0 1.6e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PGAP1 PF07819.8 gi|307595710|ref|YP_003902027.1| - 0.0029 17.2 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 PGAP1-like protein Peptidase_S9 PF00326.16 gi|307595710|ref|YP_003902027.1| - 0.095 11.9 0.1 0.36 9.9 0.1 1.9 1 1 0 1 1 1 0 Prolyl oligopeptidase family Peptidase_S28 PF05577.7 gi|307595710|ref|YP_003902027.1| - 0.18 10.3 0.0 0.35 9.3 0.0 1.4 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Thermopsin PF05317.6 gi|307595711|ref|YP_003902028.1| - 2.2e-58 197.2 16.3 2.2e-58 197.2 11.3 3.4 2 2 0 3 3 3 1 Thermopsin MFS_1 PF07690.11 gi|307595712|ref|YP_003902029.1| - 3.6e-35 121.3 48.5 3.6e-35 121.3 33.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307595712|ref|YP_003902029.1| - 9.9e-05 21.0 15.1 9.9e-05 21.0 10.5 2.9 2 1 0 2 2 2 1 Sugar (and other) transporter AA_permease PF00324.16 gi|307595713|ref|YP_003902030.1| - 1.1e-33 116.3 57.2 1.4e-32 112.7 39.6 2.0 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|307595713|ref|YP_003902030.1| - 7.9e-28 97.1 60.4 4e-27 94.8 41.9 1.8 1 1 0 1 1 1 1 Amino acid permease Cellulase PF00150.13 gi|307595714|ref|YP_003902031.1| - 6.4e-05 22.2 0.0 0.00012 21.3 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) DUF4434 PF14488.1 gi|307595714|ref|YP_003902031.1| - 0.0019 17.9 0.0 0.0048 16.6 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4434) Glyco_hydro_1 PF00232.13 gi|307595714|ref|YP_003902031.1| - 0.016 13.3 0.1 0.028 12.6 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 1 Cellulase-like PF12876.2 gi|307595714|ref|YP_003902031.1| - 0.05 14.0 0.0 0.15 12.5 0.0 1.9 1 0 0 1 1 1 0 Sugar-binding cellulase-like ABC_membrane PF00664.18 gi|307595715|ref|YP_003902032.1| - 1.1e-05 25.0 6.8 1.1e-05 25.0 4.7 2.0 2 0 0 2 2 2 1 ABC transporter transmembrane region AAA_31 PF13614.1 gi|307595715|ref|YP_003902032.1| - 0.098 12.5 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF3043 PF11241.3 gi|307595715|ref|YP_003902032.1| - 0.98 8.9 6.0 5.9 6.4 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3043) Glyco_hydro_12 PF01670.11 gi|307595716|ref|YP_003902033.1| - 1.3e-09 38.0 0.6 2.7e-09 37.0 0.4 1.5 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 ABC_tran PF00005.22 gi|307595717|ref|YP_003902034.1| - 2.1e-32 112.3 0.0 3.1e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|307595717|ref|YP_003902034.1| - 3.7e-19 68.8 0.1 8.3e-19 67.7 0.0 1.6 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|307595717|ref|YP_003902034.1| - 8.6e-09 35.7 4.5 3.1e-06 27.3 3.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|307595717|ref|YP_003902034.1| - 4.9e-05 23.4 0.6 0.00033 20.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|307595717|ref|YP_003902034.1| - 5.8e-05 23.4 0.0 0.00016 21.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|307595717|ref|YP_003902034.1| - 0.00032 20.7 0.2 0.00068 19.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|307595717|ref|YP_003902034.1| - 0.00039 19.8 0.2 0.00086 18.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|307595717|ref|YP_003902034.1| - 0.0022 17.2 0.1 0.0037 16.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|307595717|ref|YP_003902034.1| - 0.0031 18.3 0.1 0.0074 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|307595717|ref|YP_003902034.1| - 0.0034 16.7 0.1 0.0089 15.4 0.0 1.8 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|307595717|ref|YP_003902034.1| - 0.0044 16.7 0.0 0.0074 15.9 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|307595717|ref|YP_003902034.1| - 0.0048 16.7 0.1 0.038 13.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|307595717|ref|YP_003902034.1| - 0.02 13.3 0.2 1.6 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|307595717|ref|YP_003902034.1| - 0.026 14.0 0.0 0.29 10.6 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF87 PF01935.12 gi|307595717|ref|YP_003902034.1| - 0.031 14.1 0.4 0.074 12.8 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 NB-ARC PF00931.17 gi|307595717|ref|YP_003902034.1| - 0.037 12.8 0.0 0.056 12.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|307595717|ref|YP_003902034.1| - 0.04 13.3 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|307595717|ref|YP_003902034.1| - 0.043 13.9 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|307595717|ref|YP_003902034.1| - 0.044 13.4 0.1 0.086 12.4 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|307595717|ref|YP_003902034.1| - 0.065 13.7 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Sigma54_activ_2 PF14532.1 gi|307595717|ref|YP_003902034.1| - 0.066 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_15 PF13175.1 gi|307595717|ref|YP_003902034.1| - 0.12 11.3 1.4 0.78 8.7 0.1 2.3 1 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|307595717|ref|YP_003902034.1| - 0.13 12.5 0.5 0.26 11.5 0.1 1.6 2 0 0 2 2 1 0 AAA domain ATP-synt_ab PF00006.20 gi|307595717|ref|YP_003902034.1| - 0.16 11.4 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_tran PF00005.22 gi|307595718|ref|YP_003902035.1| - 3.7e-25 88.8 0.0 5e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|307595718|ref|YP_003902035.1| - 6.6e-20 71.2 0.0 1.1e-19 70.5 0.0 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|307595718|ref|YP_003902035.1| - 6.3e-10 39.5 1.8 1e-05 25.6 0.2 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|307595718|ref|YP_003902035.1| - 0.00013 21.3 0.0 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain CbiA PF01656.18 gi|307595718|ref|YP_003902035.1| - 0.005 16.2 0.7 0.046 13.1 0.5 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_13 PF13166.1 gi|307595718|ref|YP_003902035.1| - 0.0052 15.3 0.1 0.084 11.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|307595718|ref|YP_003902035.1| - 0.0053 16.1 0.1 0.038 13.3 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|307595718|ref|YP_003902035.1| - 0.0068 17.2 0.2 0.014 16.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|307595718|ref|YP_003902035.1| - 0.0071 16.7 0.1 0.015 15.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|307595718|ref|YP_003902035.1| - 0.01 15.2 0.0 0.021 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|307595718|ref|YP_003902035.1| - 0.012 15.9 0.6 0.068 13.4 0.0 2.0 1 1 1 2 2 2 0 AAA domain SMC_N PF02463.14 gi|307595718|ref|YP_003902035.1| - 0.015 14.5 0.3 0.048 12.8 0.2 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain PhoH PF02562.11 gi|307595718|ref|YP_003902035.1| - 0.018 14.2 0.1 0.035 13.3 0.0 1.6 1 1 0 1 1 1 0 PhoH-like protein DUF258 PF03193.11 gi|307595718|ref|YP_003902035.1| - 0.03 13.5 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|307595718|ref|YP_003902035.1| - 0.047 12.7 0.4 4.8 6.1 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|307595718|ref|YP_003902035.1| - 0.061 12.1 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|307595718|ref|YP_003902035.1| - 0.074 12.4 0.5 0.14 11.5 0.4 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_16 PF13191.1 gi|307595718|ref|YP_003902035.1| - 0.075 13.0 0.2 0.13 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.10 gi|307595718|ref|YP_003902035.1| - 0.087 12.6 0.0 0.85 9.4 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit zf-CCCH_2 PF14608.1 gi|307595718|ref|YP_003902035.1| - 0.14 12.2 2.6 0.31 11.0 1.8 1.6 1 0 0 1 1 1 0 Zinc finger C-x8-C-x5-C-x3-H type NACHT PF05729.7 gi|307595718|ref|YP_003902035.1| - 0.14 11.7 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|307595718|ref|YP_003902035.1| - 0.15 12.2 0.7 0.53 10.4 0.5 2.1 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|307595719|ref|YP_003902036.1| - 4.1e-14 52.5 24.4 4.1e-14 52.5 16.9 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|307595719|ref|YP_003902036.1| - 6.1e-05 22.3 0.4 6.1e-05 22.3 0.3 3.9 4 1 1 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C Glycoprotein_B PF00606.13 gi|307595719|ref|YP_003902036.1| - 0.12 10.4 6.9 0.16 9.9 4.8 1.1 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B BPD_transp_1 PF00528.17 gi|307595720|ref|YP_003902037.1| - 2.5e-28 98.8 24.8 2.5e-28 98.8 17.2 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|307595721|ref|YP_003902038.1| - 9.4e-39 133.2 14.4 1.5e-38 132.6 10.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ODV-E18 PF10717.4 gi|307595721|ref|YP_003902038.1| - 1.3 8.5 7.1 2.1 7.8 3.1 2.4 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 ASFV_J13L PF05568.6 gi|307595721|ref|YP_003902038.1| - 2.5 7.5 9.0 0.57 9.7 2.6 2.3 2 0 0 2 2 2 0 African swine fever virus J13L protein Rifin_STEVOR PF02009.11 gi|307595721|ref|YP_003902038.1| - 4.5 6.8 8.7 7.3 6.1 6.0 1.3 1 0 0 1 1 1 0 Rifin/stevor family DUF912 PF06024.7 gi|307595721|ref|YP_003902038.1| - 6.4 6.9 10.7 0.037 14.0 1.3 1.8 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Transp_cyt_pur PF02133.10 gi|307595722|ref|YP_003902039.1| - 1.3e-37 129.3 46.3 3.1e-37 128.1 32.1 1.6 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin RNA_pol_Rpb8 PF03870.10 gi|307595722|ref|YP_003902039.1| - 0.17 12.0 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb8 Methyltransf_21 PF05050.7 gi|307595723|ref|YP_003902040.1| - 7.3e-13 48.7 0.1 1e-12 48.3 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|307595723|ref|YP_003902040.1| - 9.5e-06 26.1 0.0 1.5e-05 25.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|307595723|ref|YP_003902040.1| - 0.0015 18.1 0.2 0.0039 16.8 0.1 1.7 1 1 0 1 1 1 1 Met-10+ like-protein SNARE_assoc PF09335.6 gi|307595723|ref|YP_003902040.1| - 0.049 13.8 0.0 0.073 13.2 0.0 1.3 1 0 0 1 1 1 0 SNARE associated Golgi protein Methyltransf_22 PF13383.1 gi|307595723|ref|YP_003902040.1| - 0.055 12.9 0.1 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|307595723|ref|YP_003902040.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|307595723|ref|YP_003902040.1| - 0.11 12.1 0.0 0.15 11.8 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Lactamase_B PF00753.22 gi|307595724|ref|YP_003902041.1| - 1.4e-24 86.8 0.1 2e-24 86.3 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|307595724|ref|YP_003902041.1| - 1.2e-05 24.9 0.0 1.8e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Beta-lactamase PF00144.19 gi|307595725|ref|YP_003902042.1| - 1.3e-63 215.0 0.0 2.1e-63 214.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.1 gi|307595725|ref|YP_003902042.1| - 3.4e-31 107.1 0.8 7e-31 106.1 0.5 1.6 1 0 0 1 1 1 1 Pab87 octamerisation domain TAP_C PF03943.8 gi|307595725|ref|YP_003902042.1| - 0.17 11.3 0.0 0.35 10.3 0.0 1.5 1 0 0 1 1 1 0 TAP C-terminal domain Cupin_2 PF07883.6 gi|307595727|ref|YP_003902044.1| - 4e-17 61.4 0.0 5.2e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|307595727|ref|YP_003902044.1| - 2.7e-09 36.8 0.0 4e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|307595727|ref|YP_003902044.1| - 1.2e-07 31.3 0.0 2.4e-07 30.3 0.0 1.4 1 1 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|307595727|ref|YP_003902044.1| - 4.1e-07 29.7 0.0 5e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|307595727|ref|YP_003902044.1| - 0.00036 19.8 0.0 0.00056 19.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.7 gi|307595727|ref|YP_003902044.1| - 0.00047 20.0 0.0 0.00052 19.9 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_7 PF12973.2 gi|307595727|ref|YP_003902044.1| - 0.0024 17.6 0.0 0.0028 17.4 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain DUF1637 PF07847.7 gi|307595727|ref|YP_003902044.1| - 0.0026 17.1 0.0 0.0037 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1637) CENP-C_C PF11699.3 gi|307595727|ref|YP_003902044.1| - 0.0083 16.0 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like AraC_binding_2 PF14525.1 gi|307595727|ref|YP_003902044.1| - 0.034 13.7 0.0 0.041 13.4 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain EutQ PF06249.7 gi|307595727|ref|YP_003902044.1| - 0.1 12.1 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cupin_6 PF12852.2 gi|307595727|ref|YP_003902044.1| - 0.11 12.1 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Cupin Aminotran_1_2 PF00155.16 gi|307595728|ref|YP_003902045.1| - 2.4e-74 250.4 0.0 2.8e-74 250.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|307595728|ref|YP_003902045.1| - 2.2e-12 46.6 0.0 4.3e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|307595728|ref|YP_003902045.1| - 5.8e-09 35.1 0.0 1.8e-08 33.5 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|307595728|ref|YP_003902045.1| - 6.3e-07 28.0 0.0 1.1e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|307595728|ref|YP_003902045.1| - 4.8e-06 25.9 0.0 8e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|307595728|ref|YP_003902045.1| - 0.014 13.9 0.0 0.042 12.4 0.0 1.6 1 1 0 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain DUF3226 PF11536.3 gi|307595728|ref|YP_003902045.1| - 0.034 13.5 0.0 4.5 6.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3226) Radical_SAM PF04055.16 gi|307595728|ref|YP_003902045.1| - 0.14 12.2 0.2 14 5.8 0.0 3.0 2 1 2 4 4 4 0 Radical SAM superfamily Phage_CII PF05269.6 gi|307595730|ref|YP_003902047.1| - 0.056 13.4 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CII protein PI-PLC-X PF00388.14 gi|307595730|ref|YP_003902047.1| - 0.059 12.7 0.1 0.089 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain PLDc_2 PF13091.1 gi|307595731|ref|YP_003902048.1| - 5.6e-26 90.7 0.1 6.2e-14 51.8 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|307595731|ref|YP_003902048.1| - 1.9e-05 24.2 5.3 0.0047 16.6 0.7 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|307595731|ref|YP_003902048.1| - 0.0037 16.2 0.3 0.013 14.4 0.0 1.9 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB PP_kinase_C PF13090.1 gi|307595731|ref|YP_003902048.1| - 0.0052 15.4 0.4 1.4 7.4 0.0 2.8 2 1 1 3 3 3 2 Polyphosphate kinase C-terminal domain NMN_transporter PF04973.7 gi|307595731|ref|YP_003902048.1| - 0.51 9.7 5.0 2.2 7.7 0.1 2.3 2 0 0 2 2 2 0 Nicotinamide mononucleotide transporter DUF912 PF06024.7 gi|307595731|ref|YP_003902048.1| - 1.8 8.6 5.7 0.36 10.9 0.1 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) adh_short_C2 PF13561.1 gi|307595732|ref|YP_003902049.1| - 6.4e-37 127.6 0.1 7.5e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|307595732|ref|YP_003902049.1| - 1.3e-36 126.0 0.2 1.7e-36 125.6 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|307595732|ref|YP_003902049.1| - 3.3e-16 59.4 0.0 4.8e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.14 gi|307595732|ref|YP_003902049.1| - 0.00091 18.0 0.1 0.0012 17.6 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|307595732|ref|YP_003902049.1| - 0.0054 16.7 0.1 0.014 15.4 0.1 1.6 1 1 0 1 1 1 1 NADH(P)-binding DUF1776 PF08643.5 gi|307595732|ref|YP_003902049.1| - 0.031 13.4 0.0 2 7.4 0.0 2.1 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) UPF0146 PF03686.8 gi|307595732|ref|YP_003902049.1| - 0.032 14.0 0.5 0.2 11.4 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) F420_oxidored PF03807.12 gi|307595732|ref|YP_003902049.1| - 0.07 13.5 0.5 0.24 11.8 0.1 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|307595732|ref|YP_003902049.1| - 0.086 12.4 1.0 0.21 11.2 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|307595732|ref|YP_003902049.1| - 0.12 12.3 1.1 0.34 10.9 0.2 2.1 2 0 0 2 2 2 0 TrkA-N domain ABC_tran PF00005.22 gi|307595733|ref|YP_003902050.1| - 6.5e-30 104.2 0.0 9.8e-30 103.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307595733|ref|YP_003902050.1| - 7.9e-14 52.2 0.0 2.1e-08 34.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|307595733|ref|YP_003902050.1| - 9.5e-09 35.6 0.2 1.6e-08 34.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|307595733|ref|YP_003902050.1| - 0.0038 16.7 0.1 0.0072 15.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|307595733|ref|YP_003902050.1| - 0.0055 17.0 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|307595733|ref|YP_003902050.1| - 0.0093 15.0 0.0 0.79 8.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|307595733|ref|YP_003902050.1| - 0.014 14.8 0.1 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|307595733|ref|YP_003902050.1| - 0.022 14.3 0.0 0.044 13.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|307595733|ref|YP_003902050.1| - 0.023 14.8 0.1 0.23 11.6 0.0 2.6 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|307595733|ref|YP_003902050.1| - 0.042 14.0 0.0 0.084 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|307595733|ref|YP_003902050.1| - 0.057 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|307595733|ref|YP_003902050.1| - 0.063 13.4 0.0 0.12 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|307595733|ref|YP_003902050.1| - 0.068 12.5 0.1 0.16 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|307595733|ref|YP_003902050.1| - 0.069 13.9 0.0 0.14 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|307595733|ref|YP_003902050.1| - 0.071 13.0 0.0 0.14 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|307595733|ref|YP_003902050.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|307595733|ref|YP_003902050.1| - 0.075 12.7 0.3 1.5 8.5 0.0 2.6 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|307595733|ref|YP_003902050.1| - 0.087 12.7 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain Abhydrolase_8 PF06259.7 gi|307595733|ref|YP_003902050.1| - 0.091 12.2 0.1 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 Alpha/beta hydrolase DUF2883 PF11097.3 gi|307595733|ref|YP_003902050.1| - 0.1 12.7 0.0 0.55 10.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2883) DUF258 PF03193.11 gi|307595733|ref|YP_003902050.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|307595733|ref|YP_003902050.1| - 0.13 10.6 0.0 0.19 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|307595733|ref|YP_003902050.1| - 0.16 11.6 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ABC2_membrane PF01061.19 gi|307595734|ref|YP_003902051.1| - 6.2e-34 117.0 21.8 6.2e-34 117.0 15.1 1.7 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|307595734|ref|YP_003902051.1| - 5.4e-15 55.2 30.9 5.4e-15 55.2 21.4 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|307595734|ref|YP_003902051.1| - 1.2e-07 30.8 18.4 1.7e-07 30.3 12.8 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|307595734|ref|YP_003902051.1| - 0.0028 16.8 27.6 0.0038 16.4 19.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein MHYT PF03707.11 gi|307595734|ref|YP_003902051.1| - 0.039 14.0 0.3 0.039 14.0 0.2 2.9 3 0 0 3 3 3 0 Bacterial signalling protein N terminal repeat ABC2_membrane_5 PF13346.1 gi|307595734|ref|YP_003902051.1| - 0.18 11.0 30.6 0.71 9.1 21.2 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein LysE PF01810.13 gi|307595735|ref|YP_003902052.1| - 1.5e-24 86.3 19.4 1.7e-24 86.1 13.4 1.0 1 0 0 1 1 1 1 LysE type translocator T2SF PF00482.18 gi|307595736|ref|YP_003902053.1| - 1.1e-12 47.9 2.1 3.2e-08 33.5 0.0 3.6 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF677 PF05055.7 gi|307595736|ref|YP_003902053.1| - 0.03 12.9 1.1 0.049 12.2 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF677) CbiA PF01656.18 gi|307595737|ref|YP_003902054.1| - 7.2e-14 51.6 0.0 1e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|307595737|ref|YP_003902054.1| - 5.6e-09 36.1 0.0 8.6e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|307595737|ref|YP_003902054.1| - 0.0023 17.0 0.0 0.0045 16.1 0.0 1.5 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|307595737|ref|YP_003902054.1| - 0.042 12.8 0.1 0.063 12.3 0.1 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase ParA PF10609.4 gi|307595737|ref|YP_003902054.1| - 0.12 12.2 0.1 0.29 11.0 0.1 1.6 1 0 0 1 1 1 0 ParA/MinD ATPase like PhoH PF02562.11 gi|307595737|ref|YP_003902054.1| - 0.17 11.1 0.1 0.24 10.6 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein IncA PF04156.9 gi|307595738|ref|YP_003902055.1| - 0.0012 18.5 1.5 0.0013 18.3 1.0 1.0 1 0 0 1 1 1 1 IncA protein DUF973 PF06157.6 gi|307595738|ref|YP_003902055.1| - 0.015 14.2 9.6 0.017 14.1 6.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Herpes_LMP2 PF07415.6 gi|307595738|ref|YP_003902055.1| - 0.061 11.9 1.2 0.063 11.8 0.8 1.0 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein ABC2_membrane_4 PF12730.2 gi|307595738|ref|YP_003902055.1| - 0.18 10.9 9.0 0.19 10.8 6.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein PGPGW PF09656.5 gi|307595738|ref|YP_003902055.1| - 0.36 10.1 6.5 2.8 7.3 0.1 2.2 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) RseC_MucC PF04246.7 gi|307595738|ref|YP_003902055.1| - 0.74 9.3 3.2 0.84 9.2 2.2 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC NfeD PF01957.13 gi|307595738|ref|YP_003902055.1| - 1.2 9.2 3.8 1.4 9.0 2.6 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3040 PF11239.3 gi|307595738|ref|YP_003902055.1| - 1.4 9.0 7.1 1.9 8.5 5.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) SPC12 PF06645.8 gi|307595738|ref|YP_003902055.1| - 3.2 7.6 5.9 4 7.3 4.1 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) SecE PF00584.15 gi|307595738|ref|YP_003902055.1| - 3.9 7.1 7.0 1.7 8.2 3.2 1.6 1 1 1 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex DUF202 PF02656.10 gi|307595738|ref|YP_003902055.1| - 4.7 7.5 5.2 6.8 6.9 3.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF3098 PF11297.3 gi|307595738|ref|YP_003902055.1| - 7.3 6.3 10.2 3.7e+02 0.9 7.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) RNase_HII PF01351.13 gi|307595739|ref|YP_003902056.1| - 1e-43 149.2 0.0 1.2e-43 149.0 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII DUF4129 PF13559.1 gi|307595740|ref|YP_003902057.1| - 0.0068 16.3 0.0 0.0098 15.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) LAGLIDADG_1 PF00961.14 gi|307595740|ref|YP_003902057.1| - 0.19 12.3 1.8 4.6 7.8 0.1 2.7 1 1 0 2 2 2 0 LAGLIDADG endonuclease Transglut_core PF01841.14 gi|307595741|ref|YP_003902058.1| - 2.3e-10 40.6 0.0 3.6e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF1325 PF07039.6 gi|307595741|ref|YP_003902058.1| - 0.14 11.7 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 SGF29 tudor-like domain AAA_3 PF07726.6 gi|307595742|ref|YP_003902059.1| - 4.5e-64 213.9 0.0 6.6e-64 213.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|307595742|ref|YP_003902059.1| - 1.1e-13 51.1 0.0 2e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|307595742|ref|YP_003902059.1| - 1.6e-07 30.4 0.0 2.3e-06 26.6 0.0 2.6 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|307595742|ref|YP_003902059.1| - 7e-05 23.0 0.0 0.00029 21.0 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|307595742|ref|YP_003902059.1| - 0.00059 18.9 0.1 0.0032 16.5 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|307595742|ref|YP_003902059.1| - 0.00059 19.3 0.0 0.0013 18.2 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|307595742|ref|YP_003902059.1| - 0.0016 17.6 0.2 1.7 7.7 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|307595742|ref|YP_003902059.1| - 0.023 14.6 0.1 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AD PF09793.4 gi|307595742|ref|YP_003902059.1| - 0.053 13.3 0.0 0.17 11.7 0.0 1.8 2 0 0 2 2 2 0 Anticodon-binding domain DUF58 PF01882.13 gi|307595743|ref|YP_003902060.1| - 0.00017 21.6 0.0 0.00039 20.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Acyl-CoA_dh_1 PF00441.19 gi|307595745|ref|YP_003902062.1| - 3e-47 160.4 0.3 4.7e-47 159.8 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|307595745|ref|YP_003902062.1| - 2e-26 92.7 0.0 4.5e-26 91.6 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|307595745|ref|YP_003902062.1| - 5.1e-22 77.1 0.2 8.8e-22 76.3 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|307595745|ref|YP_003902062.1| - 1.3e-15 57.7 0.0 2.1e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|307595746|ref|YP_003902063.1| - 2.5e-40 137.9 2.6 3.8e-40 137.4 1.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|307595746|ref|YP_003902063.1| - 5.6e-21 75.2 0.0 1.2e-20 74.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|307595746|ref|YP_003902063.1| - 8.8e-21 73.1 0.1 1.5e-20 72.4 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|307595746|ref|YP_003902063.1| - 3.1e-16 59.8 0.2 5.3e-16 59.0 0.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF342 PF03961.8 gi|307595746|ref|YP_003902063.1| - 0.017 13.5 0.0 0.026 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) UDG PF03167.14 gi|307595747|ref|YP_003902064.1| - 1.3e-32 112.3 0.0 1.7e-32 112.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PUA PF01472.15 gi|307595748|ref|YP_003902065.1| - 1.7e-16 59.7 1.3 2.4e-16 59.1 0.9 1.3 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|307595748|ref|YP_003902065.1| - 3.4e-13 49.2 0.0 6.2e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TruB-C_2 PF09157.6 gi|307595748|ref|YP_003902065.1| - 1.8e-05 24.4 0.4 4.2e-05 23.3 0.1 1.8 2 0 0 2 2 2 1 Pseudouridine synthase II TruB, C-terminal tRNA-synt_1b PF00579.20 gi|307595749|ref|YP_003902066.1| - 2.3e-27 95.9 0.0 1.1e-26 93.6 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Peptidase_M19 PF01244.16 gi|307595750|ref|YP_003902067.1| - 5.7e-82 275.1 0.0 6.5e-82 275.0 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|307595750|ref|YP_003902067.1| - 0.098 12.1 0.0 0.16 11.5 0.0 1.4 1 1 0 1 1 1 0 Amidohydrolase FBPase_3 PF01950.11 gi|307595751|ref|YP_003902068.1| - 1.9e-177 589.7 0.0 2.2e-177 589.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase DNA_methylase PF00145.12 gi|307595752|ref|YP_003902069.1| - 1.4e-47 162.4 0.0 6.9e-32 110.8 0.0 2.1 2 0 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|307595752|ref|YP_003902069.1| - 0.0015 18.5 0.1 0.0026 17.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|307595752|ref|YP_003902069.1| - 0.02 14.4 0.1 0.052 13.1 0.1 1.6 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase RNA_POL_M_15KD PF02150.11 gi|307595753|ref|YP_003902070.1| - 0.023 14.3 0.1 0.023 14.3 0.1 2.0 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|307595753|ref|YP_003902070.1| - 0.12 12.2 2.1 0.28 11.1 1.4 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Abhydrolase_6 PF12697.2 gi|307595755|ref|YP_003902072.1| - 1.1e-21 77.8 0.0 1.5e-10 41.3 0.0 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|307595755|ref|YP_003902072.1| - 2.3e-15 56.6 0.0 2.9e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|307595755|ref|YP_003902072.1| - 9.4e-13 48.2 0.0 4.3e-06 26.4 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|307595755|ref|YP_003902072.1| - 0.0021 17.8 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) DLH PF01738.13 gi|307595755|ref|YP_003902072.1| - 0.0098 15.1 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family ABC_tran PF00005.22 gi|307595757|ref|YP_003902074.1| - 0.00018 21.8 0.0 0.00026 21.3 0.0 1.6 1 1 0 1 1 1 1 ABC transporter Arch_ATPase PF01637.13 gi|307595757|ref|YP_003902074.1| - 0.00069 19.3 0.0 0.001 18.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|307595757|ref|YP_003902074.1| - 0.0012 17.7 0.0 0.0028 16.5 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA_22 PF13401.1 gi|307595757|ref|YP_003902074.1| - 0.018 15.1 0.1 0.04 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|307595757|ref|YP_003902074.1| - 0.019 14.5 0.1 0.039 13.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|307595757|ref|YP_003902074.1| - 0.023 14.2 0.1 0.085 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|307595757|ref|YP_003902074.1| - 0.025 13.6 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.1 gi|307595757|ref|YP_003902074.1| - 0.03 14.2 0.1 0.056 13.4 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|307595757|ref|YP_003902074.1| - 0.033 13.5 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|307595757|ref|YP_003902074.1| - 0.042 14.1 0.1 0.064 13.5 0.1 1.4 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|307595757|ref|YP_003902074.1| - 0.043 13.2 1.0 0.34 10.3 0.1 2.7 2 1 1 3 3 3 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|307595757|ref|YP_003902074.1| - 0.048 13.3 0.5 0.15 11.6 0.1 1.9 2 1 0 2 2 2 0 NACHT domain Pox_A32 PF04665.7 gi|307595757|ref|YP_003902074.1| - 0.056 12.7 0.1 0.12 11.6 0.0 1.5 1 1 0 1 1 1 0 Poxvirus A32 protein PhoH PF02562.11 gi|307595757|ref|YP_003902074.1| - 0.057 12.6 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_17 PF13207.1 gi|307595757|ref|YP_003902074.1| - 0.066 14.0 0.3 0.16 12.7 0.2 1.6 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|307595757|ref|YP_003902074.1| - 0.066 12.3 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|307595757|ref|YP_003902074.1| - 0.11 12.2 0.6 2.3 8.0 0.1 2.5 1 1 1 2 2 2 0 Part of AAA domain GatB_Yqey PF02637.13 gi|307595757|ref|YP_003902074.1| - 0.11 12.2 0.2 12 5.6 0.0 3.0 2 1 1 3 3 3 0 GatB domain AAA_29 PF13555.1 gi|307595757|ref|YP_003902074.1| - 0.15 11.6 0.0 0.34 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|307595757|ref|YP_003902074.1| - 0.19 12.0 0.1 0.38 11.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain PaREP1 PF05942.6 gi|307595758|ref|YP_003902075.1| - 3.1e-26 91.4 0.0 5e-26 90.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|307595758|ref|YP_003902075.1| - 0.058 13.2 0.6 2.7 7.8 0.1 2.1 2 0 0 2 2 2 0 HEPN domain MFS_1 PF07690.11 gi|307595759|ref|YP_003902076.1| - 1.1e-43 149.2 65.2 8.8e-35 120.0 13.8 2.8 2 1 0 2 2 2 2 Major Facilitator Superfamily Capsid-VNN PF11729.3 gi|307595759|ref|YP_003902076.1| - 0.029 13.3 0.0 0.045 12.6 0.0 1.2 1 0 0 1 1 1 0 nodavirus capsid protein MR_MLE_C PF13378.1 gi|307595760|ref|YP_003902077.1| - 5.1e-25 87.6 0.0 9.7e-25 86.7 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|307595760|ref|YP_003902077.1| - 3.3e-15 56.1 0.0 6.3e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|307595760|ref|YP_003902077.1| - 7.3e-15 55.2 0.1 5.4e-14 52.4 0.0 2.6 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AP_endonuc_2 PF01261.19 gi|307595760|ref|YP_003902077.1| - 0.022 14.0 0.0 0.38 9.9 0.0 2.3 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF2250 PF10007.4 gi|307595761|ref|YP_003902078.1| - 0.00023 21.0 0.0 0.0009 19.1 0.0 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4393 PF14337.1 gi|307595761|ref|YP_003902078.1| - 0.032 13.6 0.1 1.5 8.1 0.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) MarR_2 PF12802.2 gi|307595761|ref|YP_003902078.1| - 0.056 13.1 0.1 4.8 6.9 0.0 2.2 2 0 0 2 2 2 0 MarR family DUF4423 PF14394.1 gi|307595761|ref|YP_003902078.1| - 0.086 12.3 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Peripla_BP_2 PF01497.13 gi|307595762|ref|YP_003902079.1| - 7e-14 51.5 0.0 1.1e-13 50.9 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein Iso_dh PF00180.15 gi|307595762|ref|YP_003902079.1| - 0.13 11.1 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Isocitrate/isopropylmalate dehydrogenase Aldedh PF00171.17 gi|307595765|ref|YP_003902082.1| - 2.7e-168 560.0 0.1 3.3e-168 559.8 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|307595765|ref|YP_003902082.1| - 0.0088 15.2 0.0 0.12 11.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1487) DUF779 PF05610.6 gi|307595767|ref|YP_003902084.1| - 3e-15 55.9 0.0 3.8e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF779) PCMT PF01135.14 gi|307595768|ref|YP_003902085.1| - 9.3e-67 224.6 0.0 1.1e-66 224.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|307595768|ref|YP_003902085.1| - 2.8e-07 30.2 0.0 9.4e-07 28.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307595768|ref|YP_003902085.1| - 8.8e-07 29.4 0.0 1.3e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|307595768|ref|YP_003902085.1| - 1.7e-06 27.6 0.0 2.4e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|307595768|ref|YP_003902085.1| - 3.1e-06 27.2 0.0 4.5e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|307595768|ref|YP_003902085.1| - 2.7e-05 24.9 0.0 4.5e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|307595768|ref|YP_003902085.1| - 3.2e-05 23.0 0.0 5.4e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|307595768|ref|YP_003902085.1| - 0.012 14.6 0.0 0.016 14.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.7 gi|307595768|ref|YP_003902085.1| - 0.014 14.9 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) MTS PF05175.9 gi|307595768|ref|YP_003902085.1| - 0.017 14.5 0.0 0.026 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|307595768|ref|YP_003902085.1| - 0.017 14.8 0.0 0.027 14.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.12 gi|307595768|ref|YP_003902085.1| - 0.018 13.9 0.0 0.029 13.2 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Met_10 PF02475.11 gi|307595768|ref|YP_003902085.1| - 0.036 13.6 0.0 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_11 PF08241.7 gi|307595768|ref|YP_003902085.1| - 0.05 14.1 0.0 0.12 12.8 0.0 1.7 2 0 0 2 2 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|307595768|ref|YP_003902085.1| - 0.059 12.3 0.0 0.085 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MFS_1 PF07690.11 gi|307595769|ref|YP_003902086.1| - 2.9e-42 144.6 63.4 2.9e-42 144.6 43.9 3.3 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307595769|ref|YP_003902086.1| - 1.6e-09 36.8 13.7 1.6e-09 36.8 9.5 3.7 2 1 3 5 5 5 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|307595769|ref|YP_003902086.1| - 0.021 12.9 17.8 0.0047 15.0 6.3 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector MFS_1 PF07690.11 gi|307595770|ref|YP_003902087.1| - 1.5e-26 92.9 56.3 1.5e-26 92.9 39.0 1.7 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|307595770|ref|YP_003902087.1| - 4.6e-17 61.7 45.1 2.1e-11 43.0 13.7 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|307595770|ref|YP_003902087.1| - 0.0015 16.9 47.9 0.024 13.0 11.1 3.0 1 1 2 3 3 3 3 MFS/sugar transport protein DUF1228 PF06779.9 gi|307595770|ref|YP_003902087.1| - 0.025 14.6 3.5 0.025 14.6 2.4 3.6 4 1 1 5 5 5 0 Protein of unknown function (DUF1228) PNP_UDP_1 PF01048.15 gi|307595771|ref|YP_003902088.1| - 2.5e-39 134.6 1.7 3.1e-39 134.3 1.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Aconitase PF00330.15 gi|307595771|ref|YP_003902088.1| - 0.39 9.1 2.2 1.1 7.6 0.2 2.1 2 0 0 2 2 2 0 Aconitase family (aconitate hydratase) HypA PF01155.14 gi|307595772|ref|YP_003902089.1| - 0.059 13.0 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|307595772|ref|YP_003902089.1| - 0.19 10.9 0.8 0.33 10.2 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|307595772|ref|YP_003902089.1| - 0.3 10.7 2.3 0.62 9.7 1.6 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DEAD PF00270.24 gi|307595773|ref|YP_003902090.1| - 1.1e-25 90.1 0.0 2e-25 89.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|307595773|ref|YP_003902090.1| - 2.5e-17 62.5 0.0 1.6e-15 56.6 0.0 3.0 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|307595773|ref|YP_003902090.1| - 3.3e-12 46.7 0.2 9.5e-12 45.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) ResIII PF04851.10 gi|307595773|ref|YP_003902090.1| - 0.032 14.0 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit HemN_C PF06969.11 gi|307595773|ref|YP_003902090.1| - 0.036 14.1 0.0 0.13 12.3 0.0 2.0 1 0 0 1 1 1 0 HemN C-terminal domain HTH_45 PF14947.1 gi|307595773|ref|YP_003902090.1| - 0.12 12.2 0.0 0.35 10.7 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix Flavi_DEAD PF07652.9 gi|307595773|ref|YP_003902090.1| - 0.14 11.8 0.4 2.3 7.9 0.0 2.7 4 0 0 4 4 4 0 Flavivirus DEAD domain SNF2_N PF00176.18 gi|307595773|ref|YP_003902090.1| - 0.3 9.8 0.0 0.45 9.2 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain UPF0104 PF03706.8 gi|307595774|ref|YP_003902091.1| - 1.8e-18 66.8 39.8 4.2e-18 65.6 27.5 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) Isochorismatase PF00857.15 gi|307595776|ref|YP_003902093.1| - 1.2e-44 152.2 0.1 1.5e-44 152.0 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family Staphostatin_A PF09022.5 gi|307595777|ref|YP_003902094.1| - 0.2 11.5 1.4 2.2 8.1 0.1 2.2 2 1 0 2 2 2 0 Staphostatin A HMG-CoA_red PF00368.13 gi|307595778|ref|YP_003902095.1| - 1.4e-147 491.3 4.4 1.5e-147 491.1 3.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CagZ PF09053.5 gi|307595778|ref|YP_003902095.1| - 0.012 15.0 0.3 0.12 11.6 0.0 2.2 2 0 0 2 2 2 0 CagZ Fic PF02661.13 gi|307595778|ref|YP_003902095.1| - 0.14 12.8 0.0 0.37 11.5 0.0 1.7 1 0 0 1 1 1 0 Fic/DOC family Thiolase_C PF02803.13 gi|307595779|ref|YP_003902096.1| - 1.3e-06 27.8 0.2 8.4e-06 25.2 0.1 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|307595779|ref|YP_003902096.1| - 0.0021 17.1 0.0 0.0038 16.2 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|307595779|ref|YP_003902096.1| - 0.017 14.7 0.4 0.056 13.1 0.1 2.0 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35 PF01796.12 gi|307595780|ref|YP_003902097.1| - 1e-10 41.6 0.1 1.5e-10 41.1 0.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|307595780|ref|YP_003902097.1| - 1.2e-08 34.6 3.1 1.7e-08 34.0 2.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) KaiC PF06745.8 gi|307595782|ref|YP_003902099.1| - 8.3e-30 103.5 0.1 3.4e-28 98.3 0.1 2.5 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|307595782|ref|YP_003902099.1| - 8.3e-11 41.6 0.2 2e-09 37.1 0.1 2.8 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|307595782|ref|YP_003902099.1| - 8.8e-05 21.9 0.1 0.033 13.6 0.0 2.4 2 1 0 2 2 2 2 IstB-like ATP binding protein AAA_16 PF13191.1 gi|307595782|ref|YP_003902099.1| - 0.0003 20.8 0.1 0.0015 18.5 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain GvpD PF07088.6 gi|307595782|ref|YP_003902099.1| - 0.00045 18.6 0.0 0.00051 18.4 0.0 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|307595782|ref|YP_003902099.1| - 0.0054 15.8 0.0 0.49 9.4 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein DUF2075 PF09848.4 gi|307595782|ref|YP_003902099.1| - 0.0099 14.8 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|307595782|ref|YP_003902099.1| - 0.01 16.6 0.0 0.051 14.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|307595782|ref|YP_003902099.1| - 0.012 15.3 0.0 0.039 13.6 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|307595782|ref|YP_003902099.1| - 0.058 12.8 0.1 4.2 6.7 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|307595782|ref|YP_003902099.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|307595782|ref|YP_003902099.1| - 0.12 11.9 0.2 0.36 10.3 0.1 1.9 1 1 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|307595782|ref|YP_003902099.1| - 0.14 12.2 0.1 0.29 11.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|307595782|ref|YP_003902099.1| - 0.15 11.5 0.0 0.4 10.1 0.0 1.8 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BLOC1_2 PF10046.4 gi|307595783|ref|YP_003902100.1| - 0.21 11.7 0.2 0.21 11.7 0.1 3.2 4 0 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG12 PF04110.8 gi|307595783|ref|YP_003902100.1| - 0.28 11.3 2.7 1.1 9.4 1.2 2.5 2 0 0 2 2 2 0 Ubiquitin-like autophagy protein Apg12 EamA PF00892.15 gi|307595784|ref|YP_003902101.1| - 3.6e-10 39.9 39.4 1.1e-08 35.1 8.5 3.0 1 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|307595784|ref|YP_003902101.1| - 9.3e-06 25.8 3.8 9.3e-06 25.8 2.6 3.7 2 1 2 4 4 4 1 Multidrug resistance efflux transporter Sugar_transport PF06800.7 gi|307595784|ref|YP_003902101.1| - 0.012 14.6 16.1 0.036 13.1 11.0 2.0 1 1 0 1 1 1 0 Sugar transport protein Glyco_hydro_15 PF00723.16 gi|307595785|ref|YP_003902102.1| - 7.5e-09 34.6 0.3 4.7e-07 28.7 0.4 2.3 2 0 0 2 2 2 2 Glycosyl hydrolases family 15 DUF3995 PF13160.1 gi|307595785|ref|YP_003902102.1| - 2.1 8.4 7.8 0.64 10.0 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3995) DUF1628 PF07790.6 gi|307595785|ref|YP_003902102.1| - 2.4 8.9 9.3 0.16 12.7 2.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) IncA PF04156.9 gi|307595785|ref|YP_003902102.1| - 8.5 5.9 11.9 14 5.2 4.4 2.2 2 0 0 2 2 2 0 IncA protein Beta-Casp PF10996.3 gi|307595786|ref|YP_003902103.1| - 1.2e-30 106.0 0.0 8.6e-30 103.2 0.0 2.4 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|307595786|ref|YP_003902103.1| - 3.1e-19 69.3 1.6 1.1e-18 67.6 1.0 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|307595786|ref|YP_003902103.1| - 4.3e-14 52.0 0.1 3.5e-12 45.9 0.0 2.9 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|307595786|ref|YP_003902103.1| - 1.4e-11 44.2 0.1 5.4e-11 42.4 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Pox_H7 PF04787.7 gi|307595786|ref|YP_003902103.1| - 0.0046 16.7 0.2 0.0094 15.7 0.2 1.5 1 0 0 1 1 1 1 Late protein H7 Lactamase_B_3 PF13483.1 gi|307595786|ref|YP_003902103.1| - 0.029 14.0 0.0 0.071 12.8 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain EB_dh PF09459.5 gi|307595786|ref|YP_003902103.1| - 0.074 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Ethylbenzene dehydrogenase YolD PF08863.5 gi|307595786|ref|YP_003902103.1| - 0.71 9.7 5.4 8.3 6.3 0.0 3.9 6 0 0 6 6 6 0 YolD-like protein LAGLIDADG_WhiA PF14527.1 gi|307595787|ref|YP_003902104.1| - 0.0021 17.9 0.2 0.092 12.6 0.0 3.2 3 1 0 3 3 3 1 WhiA LAGLIDADG-like domain LAGLIDADG_3 PF14528.1 gi|307595787|ref|YP_003902104.1| - 0.011 15.8 0.7 4.9 7.4 0.1 3.0 3 0 0 3 3 3 0 LAGLIDADG-like domain GHMP_kinases_C PF08544.8 gi|307595787|ref|YP_003902104.1| - 0.088 13.0 0.0 30 4.9 0.0 3.0 2 1 1 3 3 3 0 GHMP kinases C terminal Gti1_Pac2 PF09729.4 gi|307595788|ref|YP_003902105.1| - 0.11 12.4 0.1 0.11 12.3 0.1 1.0 1 0 0 1 1 1 0 Gti1/Pac2 family Asp_protease_2 PF13650.1 gi|307595789|ref|YP_003902106.1| - 8.8e-07 29.3 0.0 1.5e-06 28.6 0.0 1.4 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|307595789|ref|YP_003902106.1| - 2e-05 24.2 0.0 4.4e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|307595789|ref|YP_003902106.1| - 0.13 12.1 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Retroviral aspartyl protease FmdA_AmdA PF03069.10 gi|307595792|ref|YP_003902109.1| - 9.6e-08 31.0 0.0 1.1e-07 30.8 0.0 1.0 1 0 0 1 1 1 1 Acetamidase/Formamidase family SH3_2 PF07653.12 gi|307595792|ref|YP_003902109.1| - 0.12 11.9 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Variant SH3 domain AA_permease PF00324.16 gi|307595793|ref|YP_003902110.1| - 6.7e-06 24.7 2.3 7e-06 24.6 1.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|307595793|ref|YP_003902110.1| - 0.00068 18.2 2.5 0.00073 18.1 1.7 1.1 1 0 0 1 1 1 1 Amino acid permease TcdA_TcdB_pore PF12920.2 gi|307595793|ref|YP_003902110.1| - 0.052 11.4 1.7 0.054 11.4 1.2 1.0 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain IncA PF04156.9 gi|307595793|ref|YP_003902110.1| - 0.3 10.6 4.8 0.35 10.4 3.3 1.1 1 0 0 1 1 1 0 IncA protein DUF202 PF02656.10 gi|307595793|ref|YP_003902110.1| - 5.6 7.2 6.2 10 6.4 4.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) AAA_5 PF07728.9 gi|307595795|ref|YP_003902112.1| - 3.6e-11 42.9 0.0 3.3e-09 36.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|307595795|ref|YP_003902112.1| - 1.5e-07 31.5 0.0 1.1e-06 28.7 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|307595795|ref|YP_003902112.1| - 1.5e-06 28.4 0.0 5.4e-06 26.6 0.0 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|307595795|ref|YP_003902112.1| - 3.3e-05 24.7 0.1 0.00013 22.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|307595795|ref|YP_003902112.1| - 6.1e-05 22.9 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|307595795|ref|YP_003902112.1| - 9e-05 22.7 0.2 0.0007 19.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|307595795|ref|YP_003902112.1| - 0.00025 19.9 0.0 0.00055 18.7 0.0 1.5 2 0 0 2 2 2 1 TIP49 C-terminus RuvB_N PF05496.7 gi|307595795|ref|YP_003902112.1| - 0.00038 19.5 0.0 0.00065 18.8 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|307595795|ref|YP_003902112.1| - 0.0022 18.1 0.0 0.019 15.1 0.0 2.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|307595795|ref|YP_003902112.1| - 0.0025 17.2 0.0 0.0059 16.0 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|307595795|ref|YP_003902112.1| - 0.0064 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|307595795|ref|YP_003902112.1| - 0.011 14.8 0.1 0.022 13.8 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.16 gi|307595795|ref|YP_003902112.1| - 0.021 13.9 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|307595795|ref|YP_003902112.1| - 0.023 14.2 0.0 0.99 9.0 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|307595795|ref|YP_003902112.1| - 0.03 13.8 0.0 0.061 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|307595795|ref|YP_003902112.1| - 0.043 13.2 0.2 0.27 10.6 0.0 2.3 1 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|307595795|ref|YP_003902112.1| - 0.067 12.8 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_10 PF12846.2 gi|307595795|ref|YP_003902112.1| - 0.072 12.5 0.4 0.87 8.9 0.1 2.4 2 0 0 2 2 2 0 AAA-like domain DUF815 PF05673.8 gi|307595795|ref|YP_003902112.1| - 0.081 11.8 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MobB PF03205.9 gi|307595795|ref|YP_003902112.1| - 0.094 12.4 0.0 0.25 11.0 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|307595795|ref|YP_003902112.1| - 0.14 12.3 0.0 0.61 10.2 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.1 gi|307595795|ref|YP_003902112.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2276 PF10040.4 gi|307595796|ref|YP_003902113.1| - 1.1e-13 51.4 0.4 1.7e-13 50.8 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) HD PF01966.17 gi|307595797|ref|YP_003902114.1| - 0.00041 20.3 0.3 0.0011 18.9 0.1 1.8 1 1 1 2 2 2 1 HD domain DUF1884 PF08967.5 gi|307595797|ref|YP_003902114.1| - 0.048 13.7 0.2 0.22 11.6 0.2 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF1884) DEAD PF00270.24 gi|307595798|ref|YP_003902115.1| - 3.6e-15 55.8 0.0 2.7e-11 43.2 0.0 2.8 3 0 0 3 3 3 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|307595798|ref|YP_003902115.1| - 4.6e-10 39.2 1.8 1.3e-08 34.5 0.2 2.5 1 1 1 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|307595798|ref|YP_003902115.1| - 2.7e-05 24.0 0.0 5.6e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Cas_Cas5d PF09704.5 gi|307595800|ref|YP_003902117.1| - 2.3e-08 33.9 0.0 5.7e-08 32.6 0.0 1.6 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|307595801|ref|YP_003902118.1| - 1.8e-43 148.3 0.0 2.4e-43 147.9 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 DUF2089 PF09862.4 gi|307595802|ref|YP_003902119.1| - 0.043 13.6 1.1 0.24 11.1 0.1 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2089) tRNA-synt_1f PF01921.13 gi|307595802|ref|YP_003902119.1| - 0.046 12.4 0.0 0.061 11.9 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (K) TAF4 PF05236.9 gi|307595802|ref|YP_003902119.1| - 0.071 12.3 2.7 1.4 8.1 0.0 2.0 2 0 0 2 2 2 0 Transcription initiation factor TFIID component TAF4 family Tricorn_C1 PF14684.1 gi|307595802|ref|YP_003902119.1| - 0.12 12.2 0.2 8 6.4 0.1 2.3 1 1 1 2 2 2 0 Tricorn protease C1 domain Penicillinase_R PF03965.11 gi|307595803|ref|YP_003902120.1| - 5.1e-05 23.3 0.0 8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor MarR_2 PF12802.2 gi|307595803|ref|YP_003902120.1| - 0.00012 21.6 0.2 0.003 17.2 0.1 2.4 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|307595803|ref|YP_003902120.1| - 0.00048 19.7 0.3 0.0029 17.2 0.2 2.3 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|307595803|ref|YP_003902120.1| - 0.038 13.9 0.3 0.099 12.5 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TBPIP PF07106.8 gi|307595803|ref|YP_003902120.1| - 0.13 11.8 0.1 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MarR PF01047.17 gi|307595803|ref|YP_003902120.1| - 0.14 11.8 0.0 0.72 9.6 0.0 1.9 2 0 0 2 2 2 0 MarR family Cas_Cas4 PF01930.12 gi|307595805|ref|YP_003902122.1| - 8.7e-19 68.0 3.2 1.2e-18 67.5 2.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|307595805|ref|YP_003902122.1| - 4e-15 55.8 0.5 3.9e-13 49.3 0.1 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.1 gi|307595805|ref|YP_003902122.1| - 0.0057 16.5 0.7 0.0074 16.1 0.5 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Dna2 PF08696.6 gi|307595805|ref|YP_003902122.1| - 0.014 14.7 2.7 4.6 6.4 0.1 3.0 2 1 1 3 3 3 0 DNA replication factor Dna2 NERD PF08378.6 gi|307595805|ref|YP_003902122.1| - 0.075 13.3 1.2 0.17 12.1 0.8 1.8 1 1 0 1 1 1 0 Nuclease-related domain CRISPR_Cas2 PF09827.4 gi|307595806|ref|YP_003902123.1| - 5.7e-16 58.4 0.3 6.4e-16 58.2 0.2 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.11 gi|307595807|ref|YP_003902124.1| - 8e-64 215.4 0.1 1e-63 215.0 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF911 PF06023.7 gi|307595808|ref|YP_003902125.1| - 1.1e-58 198.7 0.0 8e-57 192.6 0.0 2.0 1 1 0 1 1 1 1 Archaeal protein of unknown function (DUF911) Cas_Cas4 PF01930.12 gi|307595808|ref|YP_003902125.1| - 0.0011 18.9 0.0 0.56 10.1 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|307595808|ref|YP_003902125.1| - 0.0016 17.9 0.0 0.23 10.8 0.0 2.1 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily Dna2 PF08696.6 gi|307595808|ref|YP_003902125.1| - 0.054 12.8 0.0 0.12 11.6 0.0 1.6 1 0 0 1 1 1 0 DNA replication factor Dna2 GIY-YIG PF01541.19 gi|307595809|ref|YP_003902126.1| - 0.0093 16.3 0.0 0.016 15.5 0.0 1.6 1 1 0 1 1 1 1 GIY-YIG catalytic domain Peptidase_A4 PF01828.12 gi|307595810|ref|YP_003902127.1| - 2e-27 95.6 2.9 2.4e-27 95.3 2.0 1.1 1 0 0 1 1 1 1 Peptidase A4 family AhpC-TSA PF00578.16 gi|307595811|ref|YP_003902128.1| - 9.8e-42 141.5 0.0 1.1e-41 141.3 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|307595811|ref|YP_003902128.1| - 5.4e-28 97.3 0.0 6.3e-28 97.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin GSHPx PF00255.14 gi|307595811|ref|YP_003902128.1| - 2.9e-05 23.3 0.0 5.5e-05 22.4 0.0 1.4 1 1 0 1 1 1 1 Glutathione peroxidase AhpC-TSA_2 PF13911.1 gi|307595811|ref|YP_003902128.1| - 0.0048 16.8 0.0 0.0062 16.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.9 gi|307595811|ref|YP_003902128.1| - 0.023 14.3 0.0 0.11 12.1 0.0 1.9 1 1 1 2 2 2 0 SCO1/SenC Lipocalin_2 PF08212.7 gi|307595811|ref|YP_003902128.1| - 0.04 13.7 0.0 0.05 13.3 0.0 1.5 1 1 0 1 1 1 0 Lipocalin-like domain DUF3801 PF12687.2 gi|307595811|ref|YP_003902128.1| - 0.11 12.0 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) Thioredoxin_8 PF13905.1 gi|307595811|ref|YP_003902128.1| - 0.12 12.5 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like RTC PF01137.16 gi|307595813|ref|YP_003902130.1| - 6.5e-89 296.6 0.3 7.6e-89 296.4 0.2 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|307595813|ref|YP_003902130.1| - 1.1e-32 112.1 0.2 1.8e-32 111.3 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Sugar_tr PF00083.19 gi|307595814|ref|YP_003902131.1| - 2.1e-33 115.6 34.0 7.5e-24 84.1 6.0 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|307595814|ref|YP_003902131.1| - 2.5e-23 82.3 80.4 3.9e-22 78.4 33.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily NUDIX PF00293.23 gi|307595815|ref|YP_003902132.1| - 3.1e-18 65.7 0.5 4.4e-18 65.2 0.2 1.3 2 0 0 2 2 2 1 NUDIX domain NapE PF06796.6 gi|307595816|ref|YP_003902133.1| - 0.1 11.9 0.0 0.26 10.6 0.0 1.6 1 0 0 1 1 1 0 Periplasmic nitrate reductase protein NapE Polyketide_cyc2 PF10604.4 gi|307595817|ref|YP_003902134.1| - 2.2e-06 27.9 0.0 2.8e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|307595817|ref|YP_003902134.1| - 5.5e-05 23.1 0.0 6.3e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|307595817|ref|YP_003902134.1| - 0.078 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein Sugar_tr PF00083.19 gi|307595818|ref|YP_003902135.1| - 3.2e-45 154.5 28.2 4.2e-45 154.1 19.6 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|307595818|ref|YP_003902135.1| - 2.9e-38 131.5 82.5 2.9e-33 115.0 30.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Hydrolase_6 PF13344.1 gi|307595819|ref|YP_003902136.1| - 2.9e-20 72.0 0.0 5.1e-19 68.0 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|307595819|ref|YP_003902136.1| - 3e-18 65.2 0.0 5.2e-18 64.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|307595819|ref|YP_003902136.1| - 3.7e-08 34.0 0.0 1.6e-06 28.7 0.0 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|307595819|ref|YP_003902136.1| - 4.9e-08 33.4 0.0 0.00085 19.5 0.0 2.6 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase RibD_C PF01872.12 gi|307595819|ref|YP_003902136.1| - 0.0016 18.0 0.0 0.0043 16.6 0.0 1.6 2 0 0 2 2 2 1 RibD C-terminal domain PGP_phosphatase PF09419.5 gi|307595819|ref|YP_003902136.1| - 0.002 17.5 0.0 0.0042 16.4 0.0 1.5 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase DUF3391 PF11871.3 gi|307595819|ref|YP_003902136.1| - 0.084 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) SPO22 PF08631.5 gi|307595820|ref|YP_003902137.1| - 0.011 14.7 0.3 0.013 14.5 0.2 1.0 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like CRF PF00473.12 gi|307595820|ref|YP_003902137.1| - 0.024 14.6 1.7 0.024 14.6 1.2 2.0 2 0 0 2 2 2 0 Corticotropin-releasing factor family TPR_7 PF13176.1 gi|307595820|ref|YP_003902137.1| - 0.16 11.8 1.4 5.7 6.9 0.1 3.0 1 1 1 2 2 2 0 Tetratricopeptide repeat PPR PF01535.15 gi|307595820|ref|YP_003902137.1| - 0.27 11.3 1.8 8.7 6.5 0.0 2.7 2 0 0 2 2 2 0 PPR repeat TPR_16 PF13432.1 gi|307595821|ref|YP_003902138.1| - 0.024 15.2 0.5 0.052 14.2 0.4 1.7 1 1 0 1 1 1 0 Tetratricopeptide repeat Tower PF09121.5 gi|307595821|ref|YP_003902138.1| - 0.067 13.1 1.1 0.076 12.9 0.0 1.7 2 0 0 2 2 2 0 Tower TPR_14 PF13428.1 gi|307595821|ref|YP_003902138.1| - 0.087 13.5 0.1 0.35 11.6 0.0 1.9 1 1 1 2 2 2 0 Tetratricopeptide repeat Lipl32 PF12103.3 gi|307595821|ref|YP_003902138.1| - 0.088 12.2 0.0 0.096 12.1 0.0 1.1 1 0 0 1 1 1 0 Surface lipoprotein of Spirochaetales order Ribosomal_L38e PF01781.13 gi|307595822|ref|YP_003902139.1| - 3e-05 23.6 0.6 3.5e-05 23.4 0.4 1.2 1 0 0 1 1 1 1 Ribosomal L38e protein family Sigma70_ner PF04546.8 gi|307595822|ref|YP_003902139.1| - 0.04 13.5 0.0 0.041 13.5 0.0 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region Speriolin_C PF15059.1 gi|307595822|ref|YP_003902139.1| - 0.043 13.8 0.0 0.043 13.8 0.0 1.1 1 0 0 1 1 1 0 Speriolin C-terminus Borrelia_lipo_1 PF05714.6 gi|307595822|ref|YP_003902139.1| - 0.071 12.2 0.1 0.076 12.1 0.1 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi virulent strain associated lipoprotein PX PF00787.19 gi|307595822|ref|YP_003902139.1| - 0.15 11.8 0.5 0.2 11.4 0.4 1.3 1 1 0 1 1 1 0 PX domain FAD_binding_3 PF01494.14 gi|307595823|ref|YP_003902140.1| - 8.2e-16 57.9 0.5 9.8e-06 24.8 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|307595823|ref|YP_003902140.1| - 5.3e-06 25.5 0.2 0.00048 19.1 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|307595823|ref|YP_003902140.1| - 3.5e-05 23.7 0.4 0.00042 20.2 0.0 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|307595823|ref|YP_003902140.1| - 5.1e-05 23.2 0.1 0.00058 19.8 0.0 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|307595823|ref|YP_003902140.1| - 0.0013 18.5 0.0 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 ThiF family Lycopene_cycl PF05834.7 gi|307595823|ref|YP_003902140.1| - 0.0022 16.9 0.1 0.0079 15.1 0.0 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|307595823|ref|YP_003902140.1| - 0.011 14.4 0.0 0.04 12.5 0.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|307595823|ref|YP_003902140.1| - 0.027 14.2 0.1 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|307595823|ref|YP_003902140.1| - 0.028 12.8 0.0 0.041 12.3 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein Thi4 PF01946.12 gi|307595823|ref|YP_003902140.1| - 0.034 13.2 0.9 0.1 11.6 0.1 2.0 2 1 0 2 2 2 0 Thi4 family TrkA_N PF02254.13 gi|307595823|ref|YP_003902140.1| - 0.063 13.2 0.1 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain polyprenyl_synt PF00348.12 gi|307595824|ref|YP_003902141.1| - 2.6e-38 131.3 0.1 3.4e-38 130.9 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase RHH_1 PF01402.16 gi|307595825|ref|YP_003902142.1| - 9.4e-07 28.4 0.8 3.6e-06 26.6 0.1 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RBD PF02196.10 gi|307595825|ref|YP_003902142.1| - 0.034 13.8 0.0 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 Raf-like Ras-binding domain DUF771 PF05595.6 gi|307595825|ref|YP_003902142.1| - 0.078 12.9 1.2 0.14 12.0 0.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF771) HEPN PF05168.9 gi|307595825|ref|YP_003902142.1| - 0.13 12.1 0.8 0.53 10.1 0.0 2.3 1 1 1 2 2 2 0 HEPN domain Protoglobin PF11563.3 gi|307595826|ref|YP_003902143.1| - 3.6e-21 75.4 0.0 4.9e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 Protoglobin Copper-bind PF00127.15 gi|307595827|ref|YP_003902144.1| - 7.8e-06 26.0 0.1 2.5e-05 24.4 0.0 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SoxE PF06525.6 gi|307595827|ref|YP_003902144.1| - 0.00057 19.2 11.6 0.0008 18.7 3.7 3.1 2 1 0 2 2 2 1 Sulfocyanin (SoxE) Cu-oxidase_3 PF07732.10 gi|307595827|ref|YP_003902144.1| - 0.016 14.9 1.2 0.016 14.9 0.8 1.9 2 0 0 2 2 2 0 Multicopper oxidase NicO PF03824.11 gi|307595828|ref|YP_003902145.1| - 0.0016 17.8 0.6 0.002 17.5 0.4 1.1 1 0 0 1 1 1 1 High-affinity nickel-transport protein DUF4328 PF14219.1 gi|307595828|ref|YP_003902145.1| - 0.0079 15.5 1.9 0.0079 15.5 1.3 1.5 1 1 1 2 2 1 1 Domain of unknown function (DUF4328) Cytochrom_B_N PF00033.14 gi|307595828|ref|YP_003902145.1| - 0.0083 15.5 4.2 0.0094 15.3 2.9 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB DUF3329 PF11808.3 gi|307595828|ref|YP_003902145.1| - 0.011 15.8 0.7 0.013 15.6 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3329) EphA2_TM PF14575.1 gi|307595828|ref|YP_003902145.1| - 0.011 16.0 0.1 0.013 15.8 0.0 1.1 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain DUF4083 PF13314.1 gi|307595828|ref|YP_003902145.1| - 0.013 15.3 1.0 0.015 15.0 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF1517 PF07466.6 gi|307595828|ref|YP_003902145.1| - 0.017 14.1 0.0 0.017 14.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) HemY_N PF07219.8 gi|307595828|ref|YP_003902145.1| - 0.025 14.1 1.1 0.031 13.8 0.8 1.1 1 0 0 1 1 1 0 HemY protein N-terminus TRP PF06011.7 gi|307595828|ref|YP_003902145.1| - 0.036 12.6 0.3 0.042 12.4 0.2 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel Baculo_11_kDa PF06143.6 gi|307595828|ref|YP_003902145.1| - 0.041 13.2 0.0 0.048 13.0 0.0 1.0 1 0 0 1 1 1 0 Baculovirus 11 kDa family GP41 PF00517.12 gi|307595828|ref|YP_003902145.1| - 0.053 13.0 3.3 0.056 13.0 2.3 1.1 1 0 0 1 1 1 0 Retroviral envelope protein Syndecan PF01034.15 gi|307595828|ref|YP_003902145.1| - 0.069 12.8 0.1 0.079 12.6 0.0 1.1 1 0 0 1 1 1 0 Syndecan domain FtsX PF02687.16 gi|307595828|ref|YP_003902145.1| - 0.07 12.8 5.5 0.083 12.6 3.8 1.1 1 0 0 1 1 1 0 FtsX-like permease family ODV-E18 PF10717.4 gi|307595828|ref|YP_003902145.1| - 0.075 12.4 0.7 0.088 12.2 0.5 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF4363 PF14276.1 gi|307595828|ref|YP_003902145.1| - 0.1 12.3 0.6 0.11 12.1 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) TMEM156 PF15106.1 gi|307595828|ref|YP_003902145.1| - 0.1 11.8 0.8 0.12 11.6 0.6 1.0 1 0 0 1 1 1 0 TMEM156 protein family ATP-synt_8 PF00895.15 gi|307595828|ref|YP_003902145.1| - 0.11 12.7 0.4 0.17 12.0 0.3 1.4 1 0 0 1 1 1 0 ATP synthase protein 8 OAD_gamma PF04277.8 gi|307595828|ref|YP_003902145.1| - 0.11 12.8 0.1 0.12 12.7 0.0 1.1 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Rhabdo_glycop PF00974.13 gi|307595828|ref|YP_003902145.1| - 0.12 10.5 0.3 0.13 10.4 0.2 1.0 1 0 0 1 1 1 0 Rhabdovirus spike glycoprotein DUF1980 PF09323.5 gi|307595828|ref|YP_003902145.1| - 0.13 11.9 0.5 0.16 11.6 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) P12 PF12669.2 gi|307595828|ref|YP_003902145.1| - 0.14 12.3 3.4 0.3 11.3 2.4 1.6 1 1 0 1 1 1 0 Virus attachment protein p12 family Ycf1 PF05758.7 gi|307595828|ref|YP_003902145.1| - 0.27 8.8 1.7 0.31 8.6 1.2 1.0 1 0 0 1 1 1 0 Ycf1 ATG27 PF09451.5 gi|307595828|ref|YP_003902145.1| - 0.34 10.0 1.6 0.46 9.6 1.1 1.2 1 0 0 1 1 1 0 Autophagy-related protein 27 DUF4131 PF13567.1 gi|307595828|ref|YP_003902145.1| - 0.38 10.1 3.6 0.44 9.9 2.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2873 PF11395.3 gi|307595828|ref|YP_003902145.1| - 1.3 8.6 7.4 2.1 7.9 5.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2873) DUF2244 PF10003.4 gi|307595828|ref|YP_003902145.1| - 1.8 7.9 6.7 2 7.7 4.6 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) MarR_2 PF12802.2 gi|307595829|ref|YP_003902146.1| - 2.4e-06 27.1 0.0 3.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|307595829|ref|YP_003902146.1| - 1.9e-05 24.3 0.5 4e-05 23.2 0.2 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|307595829|ref|YP_003902146.1| - 0.00029 20.1 0.0 0.00083 18.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|307595829|ref|YP_003902146.1| - 0.0051 16.4 0.1 0.0091 15.6 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|307595829|ref|YP_003902146.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.1 gi|307595829|ref|YP_003902146.1| - 0.034 14.1 0.1 0.073 13.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF603 PF04645.7 gi|307595829|ref|YP_003902146.1| - 0.057 13.3 0.1 0.095 12.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF603 HTH_36 PF13730.1 gi|307595829|ref|YP_003902146.1| - 0.15 12.2 1.1 0.37 10.9 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain FAA_hydrolase PF01557.13 gi|307595830|ref|YP_003902147.1| - 7.8e-70 234.7 0.0 9.9e-70 234.3 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Pyr_redox_2 PF07992.9 gi|307595831|ref|YP_003902148.1| - 1.2e-20 74.2 4.9 7e-20 71.7 3.4 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|307595831|ref|YP_003902148.1| - 1.6e-14 54.4 0.4 3.7e-08 33.6 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|307595831|ref|YP_003902148.1| - 1.8e-09 37.0 3.4 0.01 14.7 0.1 3.1 3 0 0 3 3 3 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|307595831|ref|YP_003902148.1| - 1e-08 35.0 1.3 1.8e-06 27.8 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|307595831|ref|YP_003902148.1| - 3.4e-08 33.7 9.0 0.00034 20.9 1.4 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|307595831|ref|YP_003902148.1| - 1.3e-06 27.5 5.8 0.083 11.7 0.2 3.9 4 0 0 4 4 4 2 FAD binding domain HI0933_like PF03486.9 gi|307595831|ref|YP_003902148.1| - 3.1e-05 22.6 3.5 0.0007 18.1 0.1 2.8 3 0 0 3 3 3 1 HI0933-like protein Shikimate_DH PF01488.15 gi|307595831|ref|YP_003902148.1| - 0.00019 21.5 1.2 0.084 12.9 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|307595831|ref|YP_003902148.1| - 0.00021 20.8 0.4 0.049 13.1 0.0 2.6 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|307595831|ref|YP_003902148.1| - 0.00062 18.9 1.0 0.0056 15.7 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|307595831|ref|YP_003902148.1| - 0.00085 18.4 0.6 0.0026 16.9 0.0 2.0 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|307595831|ref|YP_003902148.1| - 0.001 18.2 1.7 0.093 11.7 0.5 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|307595831|ref|YP_003902148.1| - 0.0012 18.5 1.6 0.067 12.8 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|307595831|ref|YP_003902148.1| - 0.0056 15.5 7.7 0.15 10.8 0.2 2.8 2 1 1 3 3 3 2 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|307595831|ref|YP_003902148.1| - 0.012 15.4 2.5 0.025 14.3 0.1 2.4 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|307595831|ref|YP_003902148.1| - 0.024 14.8 0.3 7.4 6.8 0.0 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|307595831|ref|YP_003902148.1| - 0.16 11.9 1.7 51 3.7 0.2 3.3 3 0 0 3 3 3 0 NADH(P)-binding DUF89 PF01937.14 gi|307595833|ref|YP_003902150.1| - 6.6e-19 67.9 0.4 1.4e-17 63.5 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF89 Glyco_trans_4_4 PF13579.1 gi|307595833|ref|YP_003902150.1| - 0.0025 17.9 0.0 0.0037 17.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DoxD PF04173.8 gi|307595833|ref|YP_003902150.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 TQO small subunit DoxD IF-2B PF01008.12 gi|307595834|ref|YP_003902151.1| - 9.5e-23 80.5 0.0 3.1e-21 75.5 0.0 2.2 1 1 0 1 1 1 1 Initiation factor 2 subunit family HrpB1_HrpK PF09613.5 gi|307595834|ref|YP_003902151.1| - 0.06 12.8 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) NOSIC PF08060.8 gi|307595834|ref|YP_003902151.1| - 0.061 13.1 0.1 0.21 11.4 0.1 2.0 1 0 0 1 1 1 0 NOSIC (NUC001) domain CxxCxxCC PF03692.10 gi|307595835|ref|YP_003902152.1| - 7.6e-11 42.3 1.4 1e-10 41.9 1.0 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DegT_DnrJ_EryC1 PF01041.12 gi|307595836|ref|YP_003902153.1| - 3.3e-122 408.0 0.0 3.9e-122 407.8 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|307595836|ref|YP_003902153.1| - 1.3e-07 31.1 0.0 1.8e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|307595836|ref|YP_003902153.1| - 2.5e-07 29.9 0.0 4e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|307595836|ref|YP_003902153.1| - 5.5e-07 28.6 0.8 3.5e-06 26.0 0.1 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|307595836|ref|YP_003902153.1| - 5.9e-05 21.5 0.1 7.9e-05 21.0 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.14 gi|307595836|ref|YP_003902153.1| - 0.073 11.4 0.2 0.12 10.7 0.1 1.3 1 0 0 1 1 1 0 Serine hydroxymethyltransferase Cren7 PF11520.3 gi|307595837|ref|YP_003902154.1| - 4.7e-17 61.3 1.5 5.3e-17 61.1 1.1 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 PRC PF05239.11 gi|307595838|ref|YP_003902155.1| - 2.6e-05 23.9 0.5 6.6e-05 22.6 0.4 1.7 1 0 0 1 1 1 1 PRC-barrel domain HAUS6_N PF14661.1 gi|307595838|ref|YP_003902155.1| - 0.0063 15.9 0.0 0.0079 15.5 0.0 1.3 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 6 N-terminus AAA_13 PF13166.1 gi|307595838|ref|YP_003902155.1| - 0.0079 14.7 2.3 0.0095 14.4 1.6 1.1 1 0 0 1 1 1 1 AAA domain NPV_P10 PF05531.7 gi|307595838|ref|YP_003902155.1| - 0.016 15.4 2.0 3.7 7.8 1.4 3.1 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein CorA PF01544.13 gi|307595838|ref|YP_003902155.1| - 0.017 14.1 5.7 0.024 13.6 3.9 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Spc7 PF08317.6 gi|307595838|ref|YP_003902155.1| - 0.023 13.3 5.9 0.031 12.9 3.3 1.7 1 1 1 2 2 2 0 Spc7 kinetochore protein ISG65-75 PF11727.3 gi|307595838|ref|YP_003902155.1| - 0.029 13.4 1.4 0.041 12.9 1.0 1.1 1 0 0 1 1 1 0 Invariant surface glycoprotein Atg14 PF10186.4 gi|307595838|ref|YP_003902155.1| - 0.031 13.2 5.6 0.043 12.7 3.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 RRF PF01765.14 gi|307595838|ref|YP_003902155.1| - 0.038 13.4 0.8 0.038 13.4 0.5 1.9 1 1 0 2 2 2 0 Ribosome recycling factor DUF4041 PF13250.1 gi|307595838|ref|YP_003902155.1| - 0.057 12.9 0.3 0.18 11.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4041) DUF2317 PF10079.4 gi|307595838|ref|YP_003902155.1| - 0.058 11.9 0.3 0.075 11.6 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) FadA PF09403.5 gi|307595838|ref|YP_003902155.1| - 0.064 13.2 2.2 3 7.8 1.4 2.4 1 1 1 2 2 2 0 Adhesion protein FadA Peptidase_S29 PF02907.10 gi|307595838|ref|YP_003902155.1| - 0.096 12.2 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease Snapin_Pallidin PF14712.1 gi|307595838|ref|YP_003902155.1| - 0.16 12.3 4.6 0.51 10.6 0.6 2.8 2 1 1 3 3 3 0 Snapin/Pallidin Baculo_p24 PF05073.7 gi|307595838|ref|YP_003902155.1| - 0.19 11.3 3.0 1.7 8.1 0.2 2.3 1 1 1 2 2 2 0 Baculovirus P24 capsid protein SPX PF03105.14 gi|307595838|ref|YP_003902155.1| - 0.21 11.3 2.1 0.33 10.7 1.5 1.5 1 1 0 1 1 1 0 SPX domain Occludin_ELL PF07303.8 gi|307595838|ref|YP_003902155.1| - 0.28 11.9 2.7 2 9.2 0.3 2.7 1 1 2 3 3 3 0 Occludin homology domain Laminin_II PF06009.7 gi|307595838|ref|YP_003902155.1| - 0.44 10.3 3.8 4.7 6.9 0.5 2.7 1 1 1 2 2 2 0 Laminin Domain II Rho_Binding PF08912.6 gi|307595838|ref|YP_003902155.1| - 1 9.7 6.3 16 5.8 0.4 2.9 2 1 1 3 3 3 0 Rho Binding CK2S PF15011.1 gi|307595838|ref|YP_003902155.1| - 1.3 8.8 5.2 11 5.8 1.4 2.6 1 1 2 3 3 3 0 Casein Kinase 2 substrate IncA PF04156.9 gi|307595838|ref|YP_003902155.1| - 1.3 8.5 8.4 1.4 8.4 3.9 2.1 1 1 1 2 2 2 0 IncA protein 4HB_MCP_1 PF12729.2 gi|307595838|ref|YP_003902155.1| - 1.6 8.0 6.0 6.2 6.1 0.3 2.5 1 1 1 2 2 2 0 Four helix bundle sensory module for signal transduction Syntaxin PF00804.20 gi|307595838|ref|YP_003902155.1| - 2.3 8.4 7.2 1.9 8.7 2.3 2.3 1 1 1 2 2 2 0 Syntaxin TSC22 PF01166.13 gi|307595838|ref|YP_003902155.1| - 3 7.8 7.6 0.3 11.0 0.2 2.5 2 1 0 2 2 2 0 TSC-22/dip/bun family Ribosomal_L29 PF00831.18 gi|307595838|ref|YP_003902155.1| - 5.6 6.7 8.4 2.6 7.8 1.7 2.6 2 1 1 3 3 2 0 Ribosomal L29 protein Lar_restr_allev PF14354.1 gi|307595839|ref|YP_003902156.1| - 0.01 16.1 0.2 0.012 15.8 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-trcl PF13451.1 gi|307595839|ref|YP_003902156.1| - 0.017 14.7 0.7 0.34 10.5 0.1 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain zf-DNA_Pol PF08996.5 gi|307595839|ref|YP_003902156.1| - 0.044 13.1 0.2 0.051 12.9 0.1 1.2 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger DUF3797 PF12677.2 gi|307595839|ref|YP_003902156.1| - 0.057 13.0 4.3 2.2 7.9 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Mu-like_Com PF10122.4 gi|307595839|ref|YP_003902156.1| - 0.06 12.4 0.5 0.22 10.5 0.0 1.9 2 0 0 2 2 2 0 Mu-like prophage protein Com A2L_zn_ribbon PF08792.5 gi|307595839|ref|YP_003902156.1| - 0.085 12.3 2.1 1 8.8 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|307595839|ref|YP_003902156.1| - 0.11 12.1 1.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Elf1 PF05129.8 gi|307595839|ref|YP_003902156.1| - 0.13 11.9 0.4 0.21 11.2 0.3 1.3 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Cys_rich_KTR PF14205.1 gi|307595839|ref|YP_003902156.1| - 0.3 10.5 3.9 1.4 8.3 2.7 1.9 1 1 0 1 1 1 0 Cysteine-rich KTR PHD PF00628.24 gi|307595839|ref|YP_003902156.1| - 0.59 9.8 2.9 5.5 6.7 1.7 2.0 1 1 0 1 1 1 0 PHD-finger PHD_2 PF13831.1 gi|307595839|ref|YP_003902156.1| - 0.82 9.0 3.6 6.6 6.1 2.5 2.0 1 1 0 1 1 1 0 PHD-finger RimK PF08443.6 gi|307595840|ref|YP_003902157.1| - 5.1e-35 120.6 0.0 6.2e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|307595840|ref|YP_003902157.1| - 2.4e-17 62.5 0.0 1.3e-16 60.2 0.0 1.9 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|307595840|ref|YP_003902157.1| - 5.3e-12 45.8 0.0 8.3e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|307595840|ref|YP_003902157.1| - 1.4e-10 41.2 0.1 2.1e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|307595840|ref|YP_003902157.1| - 0.001 17.8 0.0 0.0032 16.2 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_YheCD PF14398.1 gi|307595840|ref|YP_003902157.1| - 0.0012 17.6 0.0 0.028 13.2 0.0 2.3 1 1 1 2 2 2 1 YheC/D like ATP-grasp TctB PF07331.6 gi|307595841|ref|YP_003902158.1| - 0.011 15.4 3.8 0.011 15.4 2.6 2.2 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family Baculo_11_kDa PF06143.6 gi|307595841|ref|YP_003902158.1| - 0.053 12.8 9.8 0.22 10.9 0.6 3.2 3 0 0 3 3 3 0 Baculovirus 11 kDa family Orbi_NS3 PF01616.11 gi|307595841|ref|YP_003902158.1| - 0.15 10.9 5.0 0.27 10.1 0.4 2.1 2 0 0 2 2 2 0 Orbivirus NS3 TMEM237 PF15383.1 gi|307595841|ref|YP_003902158.1| - 1.7 7.7 4.8 14 4.7 0.0 2.3 2 1 0 2 2 2 0 Transmembrane protein 237 SirB PF04247.7 gi|307595841|ref|YP_003902158.1| - 2 8.1 9.5 0.37 10.5 0.3 2.8 3 0 0 3 3 3 0 Invasion gene expression up-regulator, SirB PgaD PF13994.1 gi|307595841|ref|YP_003902158.1| - 2.2 7.7 7.6 0.26 10.7 1.5 1.9 1 1 1 2 2 2 0 PgaD-like protein DUF2615 PF11027.3 gi|307595841|ref|YP_003902158.1| - 9.4 6.2 9.0 0.82 9.6 0.1 3.0 3 1 1 4 4 4 0 Protein of unknown function (DUF2615) zinc_ribbon_5 PF13719.1 gi|307595842|ref|YP_003902159.1| - 0.00066 19.1 0.9 0.088 12.4 0.6 2.2 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|307595842|ref|YP_003902159.1| - 0.00086 18.9 0.8 0.69 9.6 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|307595842|ref|YP_003902159.1| - 0.0012 18.8 1.2 0.34 10.9 0.1 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|307595842|ref|YP_003902159.1| - 0.003 16.9 0.9 0.67 9.5 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Ogr_Delta PF04606.7 gi|307595842|ref|YP_003902159.1| - 0.0045 16.6 1.5 0.19 11.3 0.1 2.2 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|307595842|ref|YP_003902159.1| - 0.0046 16.4 2.2 0.06 12.8 0.1 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|307595842|ref|YP_003902159.1| - 0.0058 15.9 1.3 1.1 8.6 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding DUF3797 PF12677.2 gi|307595842|ref|YP_003902159.1| - 0.0069 15.9 2.3 0.32 10.6 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.1 gi|307595842|ref|YP_003902159.1| - 0.014 14.5 7.0 0.13 11.4 4.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|307595842|ref|YP_003902159.1| - 0.015 15.2 0.3 3.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Auto_anti-p27 PF06677.7 gi|307595842|ref|YP_003902159.1| - 0.018 14.7 0.3 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|307595842|ref|YP_003902159.1| - 0.018 14.6 1.3 0.096 12.3 0.9 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain IBR PF01485.16 gi|307595842|ref|YP_003902159.1| - 0.02 14.7 0.1 0.028 14.2 0.1 1.3 1 0 0 1 1 1 0 IBR domain zf-RING_3 PF14369.1 gi|307595842|ref|YP_003902159.1| - 0.038 13.9 0.6 7.8 6.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger zf-TFIIB PF13453.1 gi|307595842|ref|YP_003902159.1| - 0.048 12.8 2.1 1.9 7.7 0.2 2.3 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-C3HC4_3 PF13920.1 gi|307595842|ref|YP_003902159.1| - 0.059 13.0 1.7 2.1 8.0 0.2 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|307595842|ref|YP_003902159.1| - 0.068 13.0 1.7 0.48 10.2 1.2 1.9 1 1 0 1 1 1 0 Double zinc ribbon NMD3 PF04981.8 gi|307595842|ref|YP_003902159.1| - 0.074 12.1 1.1 0.14 11.2 0.7 1.5 1 1 0 1 1 1 0 NMD3 family zf-NADH-PPase PF09297.6 gi|307595842|ref|YP_003902159.1| - 0.075 12.5 2.1 6.2 6.4 0.2 2.6 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-DNA_Pol PF08996.5 gi|307595842|ref|YP_003902159.1| - 0.084 12.2 0.0 0.091 12.1 0.0 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger CpXC PF14353.1 gi|307595842|ref|YP_003902159.1| - 0.088 12.7 0.5 3.7 7.5 0.0 2.0 1 1 0 1 1 1 0 CpXC protein Terminase_GpA PF05876.7 gi|307595842|ref|YP_003902159.1| - 0.089 11.1 0.0 0.089 11.1 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-RING_2 PF13639.1 gi|307595842|ref|YP_003902159.1| - 0.097 12.5 0.7 3.1 7.6 0.0 2.1 2 0 0 2 2 2 0 Ring finger domain UPF0547 PF10571.4 gi|307595842|ref|YP_003902159.1| - 0.16 11.7 3.7 4.5 7.0 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.7 gi|307595842|ref|YP_003902159.1| - 0.16 11.7 0.9 0.54 10.0 0.6 1.7 1 1 0 1 1 1 0 zinc-ribbons zf-H2C2_2 PF13465.1 gi|307595842|ref|YP_003902159.1| - 0.18 12.1 1.9 11 6.4 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger double domain PhnA_Zn_Ribbon PF08274.7 gi|307595842|ref|YP_003902159.1| - 0.19 11.5 1.4 7.9 6.3 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DNA_ligase_ZBD PF03119.11 gi|307595842|ref|YP_003902159.1| - 0.21 11.3 4.6 0.21 11.3 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-tcix PF14952.1 gi|307595842|ref|YP_003902159.1| - 0.24 10.7 1.8 1.2 8.5 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn_Tnp_IS1595 PF12760.2 gi|307595842|ref|YP_003902159.1| - 0.25 11.1 4.3 3.9 7.3 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|307595842|ref|YP_003902159.1| - 0.25 11.0 1.2 16 5.1 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.1 gi|307595842|ref|YP_003902159.1| - 0.28 11.0 1.7 0.99 9.3 0.0 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin PF00301.15 gi|307595842|ref|YP_003902159.1| - 0.36 10.7 3.6 3.9 7.4 2.5 2.1 1 1 1 2 2 2 0 Rubredoxin zf-HIT PF04438.11 gi|307595842|ref|YP_003902159.1| - 0.44 10.2 3.0 3.5 7.3 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger DiS_P_DiS PF06750.8 gi|307595842|ref|YP_003902159.1| - 0.45 10.3 2.0 1.9 8.3 1.2 1.9 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-IS66 PF13005.2 gi|307595842|ref|YP_003902159.1| - 0.75 9.8 5.4 22 5.1 3.7 2.3 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|307595842|ref|YP_003902159.1| - 5.2 6.8 5.7 51 3.6 4.0 2.3 1 1 0 1 1 1 0 Nudix N-terminal FRG1 PF06229.7 gi|307595844|ref|YP_003902161.1| - 0.1 12.0 0.1 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 FRG1-like family PHB_acc_N PF07879.6 gi|307595844|ref|YP_003902161.1| - 0.1 12.3 2.6 2.6 7.8 0.1 2.8 2 1 1 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain PfkB PF00294.19 gi|307595846|ref|YP_003902163.1| - 1.4e-19 70.4 0.0 2.5e-19 69.5 0.0 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase MarR_2 PF12802.2 gi|307595847|ref|YP_003902164.1| - 1.7e-13 50.0 0.3 4.2e-13 48.7 0.2 1.7 2 0 0 2 2 1 1 MarR family TrmB PF01978.14 gi|307595847|ref|YP_003902164.1| - 9.7e-11 41.2 0.0 1.9e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|307595847|ref|YP_003902164.1| - 1.2e-08 34.3 0.1 2.2e-08 33.5 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|307595847|ref|YP_003902164.1| - 1.6e-08 33.8 0.2 3.1e-08 32.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|307595847|ref|YP_003902164.1| - 2.3e-08 33.6 0.1 3.7e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|307595847|ref|YP_003902164.1| - 2.4e-08 33.5 0.0 5.4e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|307595847|ref|YP_003902164.1| - 9.4e-07 29.0 0.1 1.5e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|307595847|ref|YP_003902164.1| - 2.4e-06 27.2 0.0 4.7e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|307595847|ref|YP_003902164.1| - 3.5e-06 26.5 0.0 9.4e-06 25.1 0.0 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|307595847|ref|YP_003902164.1| - 8.4e-06 25.2 0.1 1.5e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|307595847|ref|YP_003902164.1| - 1.1e-05 25.4 0.0 2.3e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|307595847|ref|YP_003902164.1| - 2.6e-05 23.6 0.1 5.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_23 PF13384.1 gi|307595847|ref|YP_003902164.1| - 3.2e-05 23.4 0.2 5.6e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|307595847|ref|YP_003902164.1| - 4.1e-05 23.4 0.0 9.9e-05 22.2 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.11 gi|307595847|ref|YP_003902164.1| - 8.3e-05 21.8 0.1 0.00019 20.7 0.1 1.7 2 0 0 2 2 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|307595847|ref|YP_003902164.1| - 0.00017 21.6 0.0 0.00036 20.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator Penicillinase_R PF03965.11 gi|307595847|ref|YP_003902164.1| - 0.00024 21.1 0.0 0.00068 19.7 0.0 1.8 2 1 0 2 2 1 1 Penicillinase repressor HTH_28 PF13518.1 gi|307595847|ref|YP_003902164.1| - 0.00033 20.6 0.3 0.00049 20.0 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|307595847|ref|YP_003902164.1| - 0.0013 18.6 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) CENP-B_N PF04218.8 gi|307595847|ref|YP_003902164.1| - 0.0013 18.0 0.0 0.0059 16.0 0.0 2.0 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain HTH_AsnC-type PF13404.1 gi|307595847|ref|YP_003902164.1| - 0.0022 17.4 0.2 0.0041 16.6 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Crp PF00325.15 gi|307595847|ref|YP_003902164.1| - 0.0024 17.3 0.0 0.0055 16.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_3 PF01381.17 gi|307595847|ref|YP_003902164.1| - 0.0034 17.1 0.0 0.009 15.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_17 PF12728.2 gi|307595847|ref|YP_003902164.1| - 0.0065 16.6 0.1 0.013 15.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF742 PF05331.6 gi|307595847|ref|YP_003902164.1| - 0.0079 15.7 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) Sigma70_r4_2 PF08281.7 gi|307595847|ref|YP_003902164.1| - 0.01 15.2 0.0 0.024 14.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 RP-C PF03428.8 gi|307595847|ref|YP_003902164.1| - 0.014 14.8 0.2 0.03 13.7 0.1 1.6 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_29 PF13551.1 gi|307595847|ref|YP_003902164.1| - 0.017 15.2 0.1 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.1 gi|307595847|ref|YP_003902164.1| - 0.022 13.9 0.0 0.046 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 LacI PF00356.16 gi|307595847|ref|YP_003902164.1| - 0.043 13.4 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family PaaX PF07848.7 gi|307595847|ref|YP_003902164.1| - 0.052 13.5 0.4 0.26 11.3 0.1 2.2 1 1 1 2 2 2 0 PaaX-like protein GntR PF00392.16 gi|307595847|ref|YP_003902164.1| - 0.056 12.8 0.1 0.097 12.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_6 PF01418.12 gi|307595847|ref|YP_003902164.1| - 0.092 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_1 PF00126.22 gi|307595847|ref|YP_003902164.1| - 0.096 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family RPA_C PF08784.6 gi|307595847|ref|YP_003902164.1| - 0.1 13.0 0.0 0.2 12.0 0.0 1.6 1 1 0 1 1 1 0 Replication protein A C terminal HTH_11 PF08279.7 gi|307595847|ref|YP_003902164.1| - 0.11 12.2 0.2 0.34 10.5 0.1 1.8 2 0 0 2 2 2 0 HTH domain KorB PF08535.5 gi|307595847|ref|YP_003902164.1| - 0.11 12.6 0.0 0.33 11.1 0.0 1.8 2 0 0 2 2 1 0 KorB domain Terminase_5 PF06056.7 gi|307595847|ref|YP_003902164.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_10 PF04967.7 gi|307595847|ref|YP_003902164.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MerR PF00376.18 gi|307595847|ref|YP_003902164.1| - 0.14 11.6 1.1 1.1 8.8 0.7 2.1 1 1 0 1 1 1 0 MerR family regulatory protein Peptidase_M24 PF00557.19 gi|307595849|ref|YP_003902166.1| - 6.8e-59 198.9 0.7 8.9e-59 198.5 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|307595849|ref|YP_003902166.1| - 6.2e-08 33.2 0.0 4.2e-07 30.5 0.0 2.1 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain HD PF01966.17 gi|307595851|ref|YP_003902168.1| - 2e-08 34.2 0.1 5.8e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 HD domain GlutR_dimer PF00745.15 gi|307595851|ref|YP_003902168.1| - 0.14 12.1 0.0 3.1 7.7 0.0 2.5 3 0 0 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain DUF4380 PF14315.1 gi|307595851|ref|YP_003902168.1| - 0.23 10.6 0.0 0.34 10.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4380) Lycopene_cycl PF05834.7 gi|307595852|ref|YP_003902169.1| - 4e-05 22.7 0.0 0.091 11.6 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|307595852|ref|YP_003902169.1| - 0.00012 22.0 0.0 0.00065 19.6 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|307595852|ref|YP_003902169.1| - 0.00028 20.0 0.2 0.004 16.2 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain SE PF08491.5 gi|307595852|ref|YP_003902169.1| - 0.00033 19.5 0.1 0.00048 19.0 0.0 1.2 1 0 0 1 1 1 1 Squalene epoxidase NAD_binding_9 PF13454.1 gi|307595852|ref|YP_003902169.1| - 0.0012 18.6 0.0 0.0031 17.2 0.0 1.7 1 0 0 1 1 1 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|307595852|ref|YP_003902169.1| - 0.0014 17.7 0.1 0.0071 15.4 0.0 2.1 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|307595852|ref|YP_003902169.1| - 0.0035 15.8 0.0 0.0053 15.2 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.19 gi|307595852|ref|YP_003902169.1| - 0.0064 15.4 0.0 0.22 10.3 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|307595852|ref|YP_003902169.1| - 0.0089 16.4 0.0 0.04 14.3 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|307595852|ref|YP_003902169.1| - 0.042 12.4 0.0 1.9 7.0 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|307595852|ref|YP_003902169.1| - 0.047 13.5 0.0 0.089 12.6 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Kinase-PPPase PF03618.9 gi|307595852|ref|YP_003902169.1| - 0.088 12.2 0.1 0.32 10.4 0.0 1.8 2 0 0 2 2 2 0 Kinase/pyrophosphorylase TrkA_N PF02254.13 gi|307595852|ref|YP_003902169.1| - 0.14 12.1 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain tRNA-synt_1b PF00579.20 gi|307595853|ref|YP_003902170.1| - 7.3e-42 143.4 0.0 1.5e-41 142.4 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF371 PF04027.8 gi|307595854|ref|YP_003902171.1| - 8.4e-50 167.8 0.1 1e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) CTP_transf_1 PF01148.15 gi|307595855|ref|YP_003902172.1| - 0.12 11.9 17.8 0.48 10.0 12.3 1.9 1 1 0 1 1 1 0 Cytidylyltransferase family IlvN PF07991.7 gi|307595856|ref|YP_003902173.1| - 2.7e-56 189.4 0.1 4.4e-56 188.7 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|307595856|ref|YP_003902173.1| - 1.2e-19 70.6 0.0 2e-19 69.9 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|307595856|ref|YP_003902173.1| - 1.6e-08 34.5 0.0 2.8e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|307595856|ref|YP_003902173.1| - 6.4e-07 29.3 0.0 2.8e-06 27.2 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|307595856|ref|YP_003902173.1| - 6.8e-07 29.6 0.0 1.3e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|307595856|ref|YP_003902173.1| - 1.3e-05 24.4 0.0 2.7e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDH PF02153.12 gi|307595856|ref|YP_003902173.1| - 0.0021 17.0 0.0 0.0032 16.3 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase Rossmann-like PF10727.4 gi|307595856|ref|YP_003902173.1| - 0.011 15.4 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|307595856|ref|YP_003902173.1| - 0.017 14.8 0.1 2.5 7.7 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AIRS PF00586.19 gi|307595856|ref|YP_003902173.1| - 0.061 13.5 0.0 0.2 11.8 0.0 2.0 2 1 0 2 2 2 0 AIR synthase related protein, N-terminal domain Porphobil_deam PF01379.15 gi|307595857|ref|YP_003902174.1| - 2.7e-70 235.6 0.0 3.2e-70 235.3 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|307595857|ref|YP_003902174.1| - 2.5e-14 53.1 0.2 4.6e-14 52.2 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.15 gi|307595857|ref|YP_003902174.1| - 0.00024 20.4 0.0 0.00048 19.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Ribonucleas_3_2 PF11469.3 gi|307595857|ref|YP_003902174.1| - 0.084 13.0 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease III AAA_17 PF13207.1 gi|307595858|ref|YP_003902175.1| - 3.4e-07 31.0 0.2 1.4e-06 29.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|307595858|ref|YP_003902175.1| - 5.6e-05 23.4 0.5 0.00027 21.2 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA PF00004.24 gi|307595858|ref|YP_003902175.1| - 0.00029 21.0 0.0 0.0011 19.1 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307595858|ref|YP_003902175.1| - 0.0017 18.4 0.0 0.033 14.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|307595858|ref|YP_003902175.1| - 0.0057 16.3 0.1 0.1 12.3 0.0 2.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|307595858|ref|YP_003902175.1| - 0.0077 16.2 0.0 0.029 14.3 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain Miro PF08477.8 gi|307595858|ref|YP_003902175.1| - 0.031 14.7 0.0 0.11 13.0 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein AAA_33 PF13671.1 gi|307595858|ref|YP_003902175.1| - 0.059 13.2 0.0 0.31 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain HTH_23 PF13384.1 gi|307595859|ref|YP_003902176.1| - 1.1e-07 31.2 0.0 1.8e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|307595859|ref|YP_003902176.1| - 4e-07 29.3 0.0 2.7e-06 26.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_40 PF14493.1 gi|307595859|ref|YP_003902176.1| - 9.2e-07 29.0 0.3 1.5e-06 28.3 0.2 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|307595859|ref|YP_003902176.1| - 3.3e-05 23.3 0.0 6.1e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.1 gi|307595859|ref|YP_003902176.1| - 6.3e-05 22.4 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0122 PF04297.9 gi|307595859|ref|YP_003902176.1| - 6.9e-05 22.8 1.8 6.9e-05 22.8 1.3 1.8 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_28 PF13518.1 gi|307595859|ref|YP_003902176.1| - 0.00012 21.9 0.0 0.00024 21.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|307595859|ref|YP_003902176.1| - 0.00029 20.9 0.0 0.00044 20.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_17 PF12728.2 gi|307595859|ref|YP_003902176.1| - 0.00029 21.0 0.0 0.0009 19.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|307595859|ref|YP_003902176.1| - 0.00033 20.2 0.3 0.00094 18.7 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|307595859|ref|YP_003902176.1| - 0.00083 18.7 0.0 0.0023 17.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|307595859|ref|YP_003902176.1| - 0.0013 18.0 0.0 0.002 17.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_30 PF13556.1 gi|307595859|ref|YP_003902176.1| - 0.0031 17.0 0.0 0.0064 16.0 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain DegS PF05384.6 gi|307595859|ref|YP_003902176.1| - 0.0054 15.9 1.5 0.13 11.4 0.1 2.1 2 0 0 2 2 2 1 Sensor protein DegS Sigma70_ECF PF07638.6 gi|307595859|ref|YP_003902176.1| - 0.0055 16.4 0.0 0.011 15.4 0.0 1.5 1 1 0 1 1 1 1 ECF sigma factor HTH_22 PF13309.1 gi|307595859|ref|YP_003902176.1| - 0.0067 16.1 1.0 0.019 14.7 0.0 2.3 3 0 0 3 3 3 1 HTH domain Sigma70_r4 PF04545.11 gi|307595859|ref|YP_003902176.1| - 0.0068 15.7 0.0 0.022 14.0 0.0 1.9 3 0 0 3 3 1 1 Sigma-70, region 4 HTH_Tnp_1 PF01527.15 gi|307595859|ref|YP_003902176.1| - 0.0076 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_3 PF01381.17 gi|307595859|ref|YP_003902176.1| - 0.013 15.3 0.4 0.044 13.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix HTH_7 PF02796.10 gi|307595859|ref|YP_003902176.1| - 0.016 15.0 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF603 PF04645.7 gi|307595859|ref|YP_003902176.1| - 0.022 14.7 0.6 0.17 11.8 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function, DUF603 Mga PF05043.8 gi|307595859|ref|YP_003902176.1| - 0.042 14.1 1.4 0.044 14.0 0.1 1.7 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_8 PF02954.14 gi|307595859|ref|YP_003902176.1| - 0.064 12.8 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family RPA_C PF08784.6 gi|307595859|ref|YP_003902176.1| - 0.068 13.5 0.0 0.27 11.6 0.0 2.0 2 0 0 2 2 2 0 Replication protein A C terminal TrmB PF01978.14 gi|307595859|ref|YP_003902176.1| - 0.089 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF134 PF02001.11 gi|307595859|ref|YP_003902176.1| - 0.098 12.5 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_10 PF04967.7 gi|307595859|ref|YP_003902176.1| - 0.1 12.2 0.0 0.24 11.0 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_20 PF12840.2 gi|307595859|ref|YP_003902176.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|307595859|ref|YP_003902176.1| - 0.15 12.2 1.8 0.16 12.1 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain IF2_N PF04760.10 gi|307595859|ref|YP_003902176.1| - 0.15 11.7 2.8 0.21 11.2 0.1 2.5 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region EntA_Immun PF08951.5 gi|307595859|ref|YP_003902176.1| - 0.66 10.1 8.0 0.079 13.1 1.0 2.3 2 0 0 2 2 2 0 Enterocin A Immunity Asparaginase_2 PF01112.13 gi|307595860|ref|YP_003902177.1| - 4.8e-71 239.1 2.8 6e-71 238.7 2.0 1.1 1 0 0 1 1 1 1 Asparaginase Amidohydro_1 PF01979.15 gi|307595861|ref|YP_003902178.1| - 1e-38 133.8 0.0 1.4e-38 133.4 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|307595861|ref|YP_003902178.1| - 1e-09 38.0 0.0 2.8e-09 36.6 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|307595861|ref|YP_003902178.1| - 2e-09 37.9 0.1 0.0019 18.3 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|307595861|ref|YP_003902178.1| - 1.2e-07 31.2 0.4 2.1e-05 23.9 0.0 2.3 2 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|307595861|ref|YP_003902178.1| - 0.001 18.0 0.0 0.0017 17.3 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase ATP_bind_4 PF01902.12 gi|307595862|ref|YP_003902179.1| - 2.1e-56 190.7 0.0 2.4e-56 190.5 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region B5 PF03484.10 gi|307595862|ref|YP_003902179.1| - 0.0038 17.0 0.0 3 7.7 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetase B5 domain QueC PF06508.8 gi|307595862|ref|YP_003902179.1| - 0.0068 15.7 0.0 0.021 14.1 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|307595862|ref|YP_003902179.1| - 0.12 11.7 0.0 0.38 10.1 0.0 1.7 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) zinc_ribbon_5 PF13719.1 gi|307595863|ref|YP_003902180.1| - 1.4e-06 27.8 0.7 0.017 14.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|307595863|ref|YP_003902180.1| - 3.3e-06 26.6 0.4 0.048 13.3 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.1 gi|307595863|ref|YP_003902180.1| - 2.9e-05 24.0 0.3 0.078 12.9 0.0 2.1 2 0 0 2 2 2 2 CpXC protein zf-ribbon_3 PF13248.1 gi|307595863|ref|YP_003902180.1| - 6.7e-05 21.9 0.7 0.13 11.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|307595863|ref|YP_003902180.1| - 0.00024 20.8 1.1 0.016 15.0 0.1 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG zinc_ribbon_2 PF13240.1 gi|307595863|ref|YP_003902180.1| - 0.00026 20.3 1.8 0.27 10.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|307595863|ref|YP_003902180.1| - 0.00026 20.6 4.4 0.0065 16.1 0.8 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-C2H2_4 PF13894.1 gi|307595863|ref|YP_003902180.1| - 0.0012 19.0 1.8 1.4 9.4 0.1 2.3 2 0 0 2 2 2 2 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|307595863|ref|YP_003902180.1| - 0.0014 18.4 2.3 0.0077 16.1 1.6 2.0 1 1 0 1 1 1 1 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|307595863|ref|YP_003902180.1| - 0.0017 18.6 0.1 0.0024 18.1 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-CHCC PF10276.4 gi|307595863|ref|YP_003902180.1| - 0.0018 18.0 0.7 0.22 11.3 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger domain zf-C2HC_2 PF13913.1 gi|307595863|ref|YP_003902180.1| - 0.0019 17.8 5.5 0.016 14.8 0.3 2.3 2 0 0 2 2 2 1 zinc-finger of a C2HC-type Elf1 PF05129.8 gi|307595863|ref|YP_003902180.1| - 0.0023 17.6 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-H2C2_2 PF13465.1 gi|307595863|ref|YP_003902180.1| - 0.0024 18.0 0.5 3.1 8.2 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-IS66 PF13005.2 gi|307595863|ref|YP_003902180.1| - 0.0027 17.6 0.1 1.1 9.3 0.0 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-C2H2 PF00096.21 gi|307595863|ref|YP_003902180.1| - 0.0032 17.6 2.8 1.1 9.7 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-ISL3 PF14690.1 gi|307595863|ref|YP_003902180.1| - 0.0038 17.2 0.5 1.8 8.6 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FYDLN_acid PF09538.5 gi|307595863|ref|YP_003902180.1| - 0.0046 17.5 0.2 2.1 8.9 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) zf-AN1 PF01428.11 gi|307595863|ref|YP_003902180.1| - 0.0064 16.3 0.3 3.2 7.7 0.0 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger TF_Zn_Ribbon PF08271.7 gi|307595863|ref|YP_003902180.1| - 0.0076 15.5 1.1 0.94 8.8 0.1 2.4 2 0 0 2 2 2 1 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|307595863|ref|YP_003902180.1| - 0.0076 16.2 0.3 2.5 8.1 0.0 2.2 2 0 0 2 2 2 0 zinc-finger TerY-C PF15616.1 gi|307595863|ref|YP_003902180.1| - 0.0095 15.8 0.6 0.022 14.6 0.4 1.6 1 1 0 1 1 1 1 TerY-C metal binding domain zf-Di19 PF05605.7 gi|307595863|ref|YP_003902180.1| - 0.013 15.6 0.8 0.92 9.6 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding HypA PF01155.14 gi|307595863|ref|YP_003902180.1| - 0.016 14.8 0.1 0.021 14.5 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family IBR PF01485.16 gi|307595863|ref|YP_003902180.1| - 0.017 15.0 0.1 0.023 14.5 0.1 1.2 1 0 0 1 1 1 0 IBR domain PhnA_Zn_Ribbon PF08274.7 gi|307595863|ref|YP_003902180.1| - 0.017 14.9 1.5 0.32 10.8 1.0 2.3 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-RING_2 PF13639.1 gi|307595863|ref|YP_003902180.1| - 0.017 14.9 0.2 0.027 14.2 0.1 1.4 1 0 0 1 1 1 0 Ring finger domain zf-DNL PF05180.7 gi|307595863|ref|YP_003902180.1| - 0.019 14.6 0.3 0.021 14.5 0.2 1.1 1 0 0 1 1 1 0 DNL zinc finger DUF329 PF03884.9 gi|307595863|ref|YP_003902180.1| - 0.03 13.8 0.1 4.9 6.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) ADK_lid PF05191.9 gi|307595863|ref|YP_003902180.1| - 0.035 13.7 1.1 6.4 6.5 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-BED PF02892.10 gi|307595863|ref|YP_003902180.1| - 0.035 13.8 0.5 0.57 9.9 0.0 2.2 1 1 1 2 2 2 0 BED zinc finger zf-tcix PF14952.1 gi|307595863|ref|YP_003902180.1| - 0.039 13.2 1.0 5.2 6.4 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn_Tnp_IS1595 PF12760.2 gi|307595863|ref|YP_003902180.1| - 0.041 13.7 3.8 2.3 8.0 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Acetone_carb_G PF08882.6 gi|307595863|ref|YP_003902180.1| - 0.047 13.7 1.1 0.46 10.5 0.3 2.0 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit DZR PF12773.2 gi|307595863|ref|YP_003902180.1| - 0.048 13.4 1.0 0.18 11.6 0.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|307595863|ref|YP_003902180.1| - 0.053 13.0 0.6 3.6 7.1 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.1 gi|307595863|ref|YP_003902180.1| - 0.065 12.4 0.1 3.1 7.0 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger Rad50_zn_hook PF04423.9 gi|307595863|ref|YP_003902180.1| - 0.065 12.7 0.7 4.1 6.9 0.0 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif Sgf11 PF08209.6 gi|307595863|ref|YP_003902180.1| - 0.068 12.4 1.4 0.58 9.5 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) PyrI_C PF02748.10 gi|307595863|ref|YP_003902180.1| - 0.07 12.5 0.1 0.28 10.6 0.0 1.8 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Nudix_N_2 PF14803.1 gi|307595863|ref|YP_003902180.1| - 0.07 12.8 1.1 3.4 7.4 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal Trm112p PF03966.11 gi|307595863|ref|YP_003902180.1| - 0.072 13.4 0.2 7.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Trm112p-like protein DUF2387 PF09526.5 gi|307595863|ref|YP_003902180.1| - 0.074 12.9 0.0 3.9 7.4 0.0 2.1 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) DUF983 PF06170.7 gi|307595863|ref|YP_003902180.1| - 0.076 13.1 0.1 4.4 7.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zf-C2H2_6 PF13912.1 gi|307595863|ref|YP_003902180.1| - 0.077 12.9 0.6 7.9 6.5 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Prok-RING_1 PF14446.1 gi|307595863|ref|YP_003902180.1| - 0.081 12.6 0.2 11 5.7 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-FCS PF06467.9 gi|307595863|ref|YP_003902180.1| - 0.087 12.4 0.1 0.98 9.1 0.0 2.2 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Zn_Tnp_IS1 PF03811.8 gi|307595863|ref|YP_003902180.1| - 0.087 12.3 0.3 4.5 6.8 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-C3HC4_3 PF13920.1 gi|307595863|ref|YP_003902180.1| - 0.094 12.4 0.4 3.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) FYVE PF01363.16 gi|307595863|ref|YP_003902180.1| - 0.099 12.5 0.1 7.3 6.5 0.0 2.1 2 0 0 2 2 2 0 FYVE zinc finger zf-HYPF PF07503.7 gi|307595863|ref|YP_003902180.1| - 0.099 12.0 2.1 0.16 11.4 0.1 1.9 2 0 0 2 2 2 0 HypF finger TFIIS_C PF01096.13 gi|307595863|ref|YP_003902180.1| - 0.13 11.9 1.4 12 5.6 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prok-RING_4 PF14447.1 gi|307595863|ref|YP_003902180.1| - 0.13 11.8 0.5 9 5.9 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 DUF951 PF06107.6 gi|307595863|ref|YP_003902180.1| - 0.13 11.7 0.3 13 5.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) DUF35_N PF12172.3 gi|307595863|ref|YP_003902180.1| - 0.18 11.7 2.0 11 6.0 0.1 2.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF4379 PF14311.1 gi|307595863|ref|YP_003902180.1| - 0.23 11.2 2.0 2.7 7.8 0.1 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4379) zf-CSL PF05207.8 gi|307595863|ref|YP_003902180.1| - 0.54 9.8 2.5 6.7 6.3 0.2 2.2 1 1 1 2 2 2 0 CSL zinc finger zf-Mss51 PF13824.1 gi|307595863|ref|YP_003902180.1| - 1.8 8.4 4.0 17 5.3 2.8 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin PF00301.15 gi|307595863|ref|YP_003902180.1| - 5.4 6.9 8.7 0.82 9.5 2.3 2.3 2 1 0 2 2 2 0 Rubredoxin DUF1610 PF07754.6 gi|307595863|ref|YP_003902180.1| - 7.2 6.8 7.5 4.3 7.5 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Nucleoporin_C PF03177.9 gi|307595864|ref|YP_003902181.1| - 0.012 14.1 0.3 0.014 13.9 0.2 1.1 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal Sec16_C PF12931.2 gi|307595864|ref|YP_003902181.1| - 0.033 13.9 0.2 0.044 13.5 0.1 1.3 1 1 0 1 1 1 0 Sec23-binding domain of Sec16 TAN PF11640.3 gi|307595864|ref|YP_003902181.1| - 0.045 13.4 0.4 0.12 12.0 0.1 1.9 1 1 0 1 1 1 0 Telomere-length maintenance and DNA damage repair MutS_III PF05192.13 gi|307595864|ref|YP_003902181.1| - 0.046 13.5 0.1 0.053 13.2 0.1 1.1 1 0 0 1 1 1 0 MutS domain III RE_MjaI PF09568.5 gi|307595864|ref|YP_003902181.1| - 0.12 11.8 0.5 0.73 9.3 0.1 2.1 1 1 0 2 2 2 0 MjaI restriction endonuclease CENP_C_N PF15622.1 gi|307595864|ref|YP_003902181.1| - 0.14 11.3 0.2 0.19 10.9 0.1 1.1 1 0 0 1 1 1 0 Kinetochore assembly subunit CENP-C N-terminal DUF383 PF04063.9 gi|307595864|ref|YP_003902181.1| - 0.27 10.7 3.1 0.97 8.9 2.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF383) Baculo_PEP_C PF04513.7 gi|307595864|ref|YP_003902181.1| - 0.34 10.7 4.1 0.64 9.8 2.9 1.5 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus PRD PF00874.15 gi|307595864|ref|YP_003902181.1| - 0.63 10.2 3.6 1.8 8.6 0.5 2.3 1 1 0 2 2 2 0 PRD domain DUF2770 PF10968.3 gi|307595864|ref|YP_003902181.1| - 0.76 9.4 5.8 28 4.4 0.2 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2770) Ldh_1_N PF00056.18 gi|307595865|ref|YP_003902182.1| - 2.2e-39 134.4 0.1 3.1e-39 134.0 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|307595865|ref|YP_003902182.1| - 1e-24 87.2 0.0 1.8e-24 86.4 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|307595865|ref|YP_003902182.1| - 0.00015 21.1 0.0 0.00029 20.2 0.0 1.5 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.9 gi|307595865|ref|YP_003902182.1| - 0.0012 18.2 0.2 0.0031 16.9 0.1 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sua5_yciO_yrdC PF01300.13 gi|307595866|ref|YP_003902183.1| - 2.1e-53 180.2 0.0 2.9e-53 179.7 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|307595866|ref|YP_003902183.1| - 2.6e-26 92.1 0.0 3.7e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding DUF59 PF01883.14 gi|307595867|ref|YP_003902184.1| - 8.1e-14 51.3 0.1 1.1e-13 50.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 NolV PF06635.7 gi|307595868|ref|YP_003902185.1| - 0.016 14.4 0.0 0.02 14.0 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein NolV RDM PF11002.3 gi|307595868|ref|YP_003902185.1| - 0.047 13.3 0.6 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 RFPL defining motif (RDM) TrmB PF01978.14 gi|307595869|ref|YP_003902186.1| - 9.1e-10 38.1 2.2 1e-09 37.9 0.3 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|307595869|ref|YP_003902186.1| - 5.6e-09 35.5 0.1 1.9e-08 33.8 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|307595869|ref|YP_003902186.1| - 2.4e-08 33.5 0.4 7e-08 32.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|307595869|ref|YP_003902186.1| - 3.3e-07 29.7 0.1 5.9e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|307595869|ref|YP_003902186.1| - 2e-06 27.3 1.0 3.5e-06 26.5 0.1 1.9 2 0 0 2 2 1 1 HTH domain HTH_24 PF13412.1 gi|307595869|ref|YP_003902186.1| - 3.9e-06 26.1 0.1 1.2e-05 24.5 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|307595869|ref|YP_003902186.1| - 1.5e-05 24.5 0.1 2.7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|307595869|ref|YP_003902186.1| - 1.8e-05 24.7 1.7 5.5e-05 23.2 0.1 2.3 2 1 1 3 3 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|307595869|ref|YP_003902186.1| - 2.1e-05 24.0 0.0 4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|307595869|ref|YP_003902186.1| - 5.3e-05 22.5 1.4 7.8e-05 22.0 0.2 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|307595869|ref|YP_003902186.1| - 0.00016 21.4 0.1 0.00034 20.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|307595869|ref|YP_003902186.1| - 0.00021 20.5 0.0 0.00049 19.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Penicillinase_R PF03965.11 gi|307595869|ref|YP_003902186.1| - 0.00025 21.1 0.2 0.00035 20.6 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor HrcA_DNA-bdg PF03444.10 gi|307595869|ref|YP_003902186.1| - 0.00072 18.9 1.3 0.006 15.9 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Phage_rep_org_N PF09681.5 gi|307595869|ref|YP_003902186.1| - 0.00081 18.9 1.9 0.29 10.6 0.1 2.2 1 1 1 2 2 2 2 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_Crp_2 PF13545.1 gi|307595869|ref|YP_003902186.1| - 0.00091 18.9 0.0 0.002 17.8 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|307595869|ref|YP_003902186.1| - 0.00096 19.4 0.0 0.0023 18.2 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|307595869|ref|YP_003902186.1| - 0.0013 18.1 3.0 0.0086 15.5 0.8 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|307595869|ref|YP_003902186.1| - 0.0015 18.1 0.0 0.0025 17.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.1 gi|307595869|ref|YP_003902186.1| - 0.0016 18.5 0.2 0.003 17.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|307595869|ref|YP_003902186.1| - 0.0023 17.7 0.2 0.0088 15.8 0.0 2.1 2 0 0 2 2 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Fe_dep_repress PF01325.14 gi|307595869|ref|YP_003902186.1| - 0.0026 17.6 0.2 0.0056 16.5 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain KorB PF08535.5 gi|307595869|ref|YP_003902186.1| - 0.0028 17.7 0.3 1.4 9.1 0.0 2.4 1 1 1 2 2 2 1 KorB domain HTH_29 PF13551.1 gi|307595869|ref|YP_003902186.1| - 0.0039 17.3 0.0 0.0066 16.5 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_40 PF14493.1 gi|307595869|ref|YP_003902186.1| - 0.011 15.9 0.2 0.036 14.2 0.2 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain RuvB_C PF05491.8 gi|307595869|ref|YP_003902186.1| - 0.015 14.8 0.3 0.71 9.5 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus LexA_DNA_bind PF01726.11 gi|307595869|ref|YP_003902186.1| - 0.017 14.6 0.2 0.046 13.2 0.0 1.8 2 0 0 2 2 1 0 LexA DNA binding domain HTH_DeoR PF08220.7 gi|307595869|ref|YP_003902186.1| - 0.018 14.5 0.0 0.054 13.0 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RP-C PF03428.8 gi|307595869|ref|YP_003902186.1| - 0.028 13.8 0.1 0.055 12.9 0.1 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain Sigma70_ECF PF07638.6 gi|307595869|ref|YP_003902186.1| - 0.029 14.0 0.1 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor DUF2250 PF10007.4 gi|307595869|ref|YP_003902186.1| - 0.044 13.6 0.7 0.88 9.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) IF2_N PF04760.10 gi|307595869|ref|YP_003902186.1| - 0.055 13.1 0.8 0.4 10.3 0.1 2.5 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF4393 PF14337.1 gi|307595869|ref|YP_003902186.1| - 0.059 12.7 0.2 0.098 12.0 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) DUF4423 PF14394.1 gi|307595869|ref|YP_003902186.1| - 0.061 12.8 0.3 0.13 11.8 0.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_28 PF13518.1 gi|307595869|ref|YP_003902186.1| - 0.064 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|307595869|ref|YP_003902186.1| - 0.065 12.5 0.1 0.29 10.5 0.0 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain Sigma54_DBD PF04552.8 gi|307595869|ref|YP_003902186.1| - 0.075 12.5 0.2 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 Sigma-54, DNA binding domain PCI PF01399.22 gi|307595869|ref|YP_003902186.1| - 0.4 11.0 3.0 0.36 11.1 0.8 1.8 2 0 0 2 2 2 0 PCI domain OCD_Mu_crystall PF02423.10 gi|307595870|ref|YP_003902187.1| - 3.2e-76 256.0 2.9 3.8e-76 255.8 2.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|307595870|ref|YP_003902187.1| - 4.1e-11 43.1 0.2 7.1e-11 42.3 0.2 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase DUF2760 PF10816.3 gi|307595870|ref|YP_003902187.1| - 0.0026 17.2 0.1 0.0044 16.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2760) Saccharop_dh PF03435.13 gi|307595870|ref|YP_003902187.1| - 0.0084 15.1 0.1 0.012 14.5 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|307595870|ref|YP_003902187.1| - 0.011 16.0 0.1 0.031 14.5 0.0 1.8 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain IKI3 PF04762.7 gi|307595870|ref|YP_003902187.1| - 0.14 9.9 0.2 0.19 9.4 0.1 1.1 1 0 0 1 1 1 0 IKI3 family DUF3027 PF11228.3 gi|307595871|ref|YP_003902188.1| - 0.0029 17.3 0.0 0.0039 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3027) C1_3 PF07649.7 gi|307595871|ref|YP_003902188.1| - 0.018 15.1 3.5 0.065 13.2 0.1 2.6 2 0 0 2 2 2 0 C1-like domain C1_2 PF03107.11 gi|307595871|ref|YP_003902188.1| - 0.034 14.2 2.5 0.14 12.2 0.2 2.4 2 0 0 2 2 2 0 C1 domain zf-DNL PF05180.7 gi|307595871|ref|YP_003902188.1| - 0.041 13.5 0.5 0.37 10.5 0.0 2.1 2 0 0 2 2 2 0 DNL zinc finger PHD_2 PF13831.1 gi|307595871|ref|YP_003902188.1| - 0.18 11.1 0.1 0.18 11.1 0.0 2.3 3 0 0 3 3 3 0 PHD-finger PHD PF00628.24 gi|307595871|ref|YP_003902188.1| - 0.5 10.0 0.1 0.5 10.0 0.1 2.5 2 1 0 2 2 2 0 PHD-finger C1_1 PF00130.17 gi|307595871|ref|YP_003902188.1| - 0.7 9.6 5.7 2.6 7.8 1.1 2.4 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Abhydrolase_5 PF12695.2 gi|307595872|ref|YP_003902189.1| - 3.8e-19 68.8 0.0 4.8e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|307595872|ref|YP_003902189.1| - 4.8e-14 52.7 0.0 7.1e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|307595872|ref|YP_003902189.1| - 2.2e-12 46.6 0.0 3.3e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|307595872|ref|YP_003902189.1| - 1e-07 31.7 0.0 0.00041 19.9 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|307595872|ref|YP_003902189.1| - 4.2e-07 29.7 0.0 1.1e-06 28.3 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|307595872|ref|YP_003902189.1| - 6.1e-07 29.1 0.1 0.0079 15.6 0.0 2.5 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase PhoPQ_related PF10142.4 gi|307595872|ref|YP_003902189.1| - 2.1e-05 23.1 0.0 2.6e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein Esterase PF00756.15 gi|307595872|ref|YP_003902189.1| - 8.4e-05 22.1 0.0 9.6e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Putative esterase DLH PF01738.13 gi|307595872|ref|YP_003902189.1| - 8.4e-05 21.9 0.0 0.0072 15.6 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family BAAT_C PF08840.6 gi|307595872|ref|YP_003902189.1| - 0.00011 21.9 0.0 0.00055 19.7 0.0 1.9 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.8 gi|307595872|ref|YP_003902189.1| - 0.00014 21.3 0.0 0.00054 19.4 0.0 1.9 1 1 1 2 2 2 1 Serine hydrolase (FSH1) Lipase_3 PF01764.20 gi|307595872|ref|YP_003902189.1| - 0.00076 19.1 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) UPF0227 PF05728.7 gi|307595872|ref|YP_003902189.1| - 0.0023 17.6 0.1 0.021 14.5 0.0 2.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) PGAP1 PF07819.8 gi|307595872|ref|YP_003902189.1| - 0.0035 16.9 0.0 0.04 13.4 0.0 2.1 2 0 0 2 2 2 1 PGAP1-like protein DUF2974 PF11187.3 gi|307595872|ref|YP_003902189.1| - 0.0059 16.0 0.0 0.0066 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Ser_hydrolase PF06821.8 gi|307595872|ref|YP_003902189.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.3 1 1 0 1 1 1 0 Serine hydrolase Thioesterase PF00975.15 gi|307595872|ref|YP_003902189.1| - 0.014 15.6 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain DUF2305 PF10230.4 gi|307595872|ref|YP_003902189.1| - 0.026 13.9 0.0 1.6 8.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2305) LIP PF03583.9 gi|307595872|ref|YP_003902189.1| - 0.033 13.4 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 Secretory lipase DUF2048 PF09752.4 gi|307595872|ref|YP_003902189.1| - 0.074 11.9 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) DUF829 PF05705.9 gi|307595872|ref|YP_003902189.1| - 0.12 12.1 0.0 0.24 11.0 0.0 1.5 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF829) Herpes_UL6 PF01763.11 gi|307595873|ref|YP_003902190.1| - 0.12 10.4 0.2 0.15 10.1 0.2 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like AA_kinase PF00696.23 gi|307595874|ref|YP_003902191.1| - 1.1e-24 87.3 0.0 1.4e-24 86.9 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family polyprenyl_synt PF00348.12 gi|307595875|ref|YP_003902192.1| - 1.5e-47 161.6 0.1 5.5e-47 159.8 0.1 1.7 1 1 0 1 1 1 1 Polyprenyl synthetase Thiolase_N PF00108.18 gi|307595876|ref|YP_003902193.1| - 4.7e-80 268.3 0.0 6.1e-80 267.9 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|307595876|ref|YP_003902193.1| - 8.1e-42 141.5 0.8 2e-41 140.2 0.1 2.1 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|307595876|ref|YP_003902193.1| - 2.1e-05 24.1 0.6 3.9e-05 23.2 0.4 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|307595876|ref|YP_003902193.1| - 0.022 14.4 0.5 3.7 7.2 0.1 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peptidase_S49 PF01343.13 gi|307595876|ref|YP_003902193.1| - 0.058 13.1 0.1 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 Peptidase family S49 PT-TG PF14449.1 gi|307595876|ref|YP_003902193.1| - 0.061 13.1 0.2 16 5.3 0.0 2.7 2 0 0 2 2 2 0 Pre-toxin TG eRF1_2 PF03464.10 gi|307595877|ref|YP_003902194.1| - 4.9e-30 104.5 0.0 8.1e-30 103.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_1 PF03463.10 gi|307595877|ref|YP_003902194.1| - 2e-17 62.9 0.0 3.6e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Ribosomal_L7Ae PF01248.21 gi|307595877|ref|YP_003902194.1| - 7e-06 25.4 0.2 1.6e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_3 PF03465.10 gi|307595877|ref|YP_003902194.1| - 8.2e-06 26.0 1.3 0.0001 22.5 0.9 2.5 1 1 0 1 1 1 1 eRF1 domain 3 SpoU_sub_bind PF08032.7 gi|307595877|ref|YP_003902194.1| - 0.0051 16.9 0.4 0.2 11.8 0.0 2.9 3 0 0 3 3 3 1 RNA 2'-O ribose methyltransferase substrate binding ThiS PF02597.15 gi|307595878|ref|YP_003902195.1| - 9.2e-15 54.8 0.0 1.1e-14 54.6 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|307595878|ref|YP_003902195.1| - 1.2e-06 28.5 0.1 1.3e-06 28.4 0.1 1.0 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) NLE PF08154.7 gi|307595878|ref|YP_003902195.1| - 0.0025 17.7 0.6 0.0031 17.4 0.4 1.3 1 1 0 1 1 1 1 NLE (NUC135) domain ThiS PF02597.15 gi|307595879|ref|YP_003902196.1| - 1.8e-10 41.1 0.0 2.1e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|307595879|ref|YP_003902196.1| - 1.8e-05 24.7 0.0 1.9e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TGS PF02824.16 gi|307595879|ref|YP_003902196.1| - 0.084 12.7 0.0 2.8 7.8 0.0 2.2 2 1 0 2 2 2 0 TGS domain DUF1641 PF07849.6 gi|307595880|ref|YP_003902197.1| - 1.1e-14 53.7 0.4 2.3e-14 52.7 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HisKA PF00512.20 gi|307595880|ref|YP_003902197.1| - 0.068 13.1 0.4 0.53 10.3 0.3 2.2 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain ATP-synt PF00231.14 gi|307595880|ref|YP_003902197.1| - 0.1 11.9 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 ATP synthase Pyr_redox_2 PF07992.9 gi|307595881|ref|YP_003902198.1| - 8.9e-09 35.5 0.0 3.5e-08 33.5 0.0 1.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|307595881|ref|YP_003902198.1| - 2.4e-05 24.6 2.1 0.01 16.1 0.0 3.1 2 2 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|307595881|ref|YP_003902198.1| - 0.0057 15.6 0.5 0.54 9.1 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|307595881|ref|YP_003902198.1| - 0.031 14.0 0.3 5.3 6.7 0.1 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|307595881|ref|YP_003902198.1| - 0.35 9.4 0.6 0.62 8.6 0.1 1.5 2 0 0 2 2 2 0 Tryptophan halogenase MacB_PCD PF12704.2 gi|307595883|ref|YP_003902200.1| - 6.4e-26 91.3 4.1 6.4e-26 91.3 2.8 2.4 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|307595883|ref|YP_003902200.1| - 2.4e-19 69.2 23.3 2.4e-19 69.2 16.1 2.7 3 0 0 3 3 3 1 FtsX-like permease family Radical_SAM PF04055.16 gi|307595884|ref|YP_003902201.1| - 3.7e-23 82.4 0.0 6.7e-23 81.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|307595884|ref|YP_003902201.1| - 5.2e-23 80.7 0.0 1e-22 79.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|307595884|ref|YP_003902201.1| - 8.8e-05 22.2 0.1 0.00022 20.9 0.0 1.8 1 0 0 1 1 1 1 TRAM domain Filamin PF00630.14 gi|307595885|ref|YP_003902202.1| - 0.0061 17.0 1.2 6.8 7.3 0.1 4.0 3 1 0 3 3 3 2 Filamin/ABP280 repeat Big_3 PF07523.7 gi|307595885|ref|YP_003902202.1| - 1.1 9.4 8.8 3.9 7.6 0.1 4.1 5 0 0 5 5 5 0 Bacterial Ig-like domain (group 3) HAD_2 PF13419.1 gi|307595886|ref|YP_003902203.1| - 5.1e-11 43.1 0.0 6e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|307595886|ref|YP_003902203.1| - 0.00022 21.4 0.0 0.00031 20.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|307595886|ref|YP_003902203.1| - 0.023 15.1 0.0 0.5 10.7 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase PBP_like PF12727.2 gi|307595887|ref|YP_003902204.1| - 1.1e-39 135.3 0.0 1.5e-39 134.9 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.22 gi|307595887|ref|YP_003902204.1| - 3.9e-05 23.2 0.0 0.0008 19.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.1 gi|307595887|ref|YP_003902204.1| - 0.061 13.1 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix ATP_bind_1 PF03029.12 gi|307595888|ref|YP_003902205.1| - 4e-62 209.8 0.0 4.7e-62 209.6 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|307595888|ref|YP_003902205.1| - 1.1e-08 34.6 0.1 1.8e-08 34.0 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|307595888|ref|YP_003902205.1| - 9.3e-08 31.7 0.1 0.0031 16.9 0.0 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|307595888|ref|YP_003902205.1| - 6.5e-07 28.9 0.1 3.6e-05 23.2 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain SRP54 PF00448.17 gi|307595888|ref|YP_003902205.1| - 9.1e-07 28.5 0.0 6.6e-05 22.4 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain PduV-EutP PF10662.4 gi|307595888|ref|YP_003902205.1| - 2.2e-06 27.1 0.1 0.038 13.4 0.0 3.1 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|307595888|ref|YP_003902205.1| - 6.2e-06 25.9 0.0 1.3e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|307595888|ref|YP_003902205.1| - 2.4e-05 24.1 0.3 0.005 16.5 0.0 2.3 2 0 0 2 2 2 1 NTPase Miro PF08477.8 gi|307595888|ref|YP_003902205.1| - 2.9e-05 24.5 0.0 0.072 13.5 0.0 2.2 2 0 0 2 2 2 2 Miro-like protein AAA_10 PF12846.2 gi|307595888|ref|YP_003902205.1| - 4e-05 23.2 0.0 5.1e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain MMR_HSR1 PF01926.18 gi|307595888|ref|YP_003902205.1| - 0.00016 21.6 0.1 0.00038 20.4 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|307595888|ref|YP_003902205.1| - 0.00016 21.7 0.0 0.00077 19.6 0.0 2.4 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|307595888|ref|YP_003902205.1| - 0.00022 20.1 0.1 0.0016 17.3 0.0 2.2 3 0 0 3 3 2 1 ArgK protein AAA_16 PF13191.1 gi|307595888|ref|YP_003902205.1| - 0.00023 21.1 0.1 0.0015 18.5 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|307595888|ref|YP_003902205.1| - 0.00033 21.4 0.0 0.00064 20.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|307595888|ref|YP_003902205.1| - 0.00044 19.3 0.0 0.00071 18.7 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase DUF87 PF01935.12 gi|307595888|ref|YP_003902205.1| - 0.00053 19.8 0.6 0.0026 17.6 0.0 2.2 2 1 0 2 2 2 1 Domain of unknown function DUF87 NACHT PF05729.7 gi|307595888|ref|YP_003902205.1| - 0.00054 19.6 0.0 0.0013 18.4 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_30 PF13604.1 gi|307595888|ref|YP_003902205.1| - 0.0012 18.4 0.0 0.0026 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|307595888|ref|YP_003902205.1| - 0.0017 17.6 0.0 0.044 13.0 0.0 2.2 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_24 PF13479.1 gi|307595888|ref|YP_003902205.1| - 0.0031 17.1 0.0 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|307595888|ref|YP_003902205.1| - 0.0031 17.2 0.0 0.01 15.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|307595888|ref|YP_003902205.1| - 0.0037 16.5 0.0 0.13 11.4 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein T2SE PF00437.15 gi|307595888|ref|YP_003902205.1| - 0.0044 15.9 0.0 0.014 14.3 0.0 1.8 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_28 PF13521.1 gi|307595888|ref|YP_003902205.1| - 0.0064 16.4 0.0 0.035 14.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|307595888|ref|YP_003902205.1| - 0.0066 16.7 0.0 0.016 15.5 0.0 1.7 2 0 0 2 2 2 1 ABC transporter KaiC PF06745.8 gi|307595888|ref|YP_003902205.1| - 0.0087 15.1 0.5 0.054 12.6 0.3 2.1 1 1 0 1 1 1 1 KaiC Ras PF00071.17 gi|307595888|ref|YP_003902205.1| - 0.0089 15.4 0.1 1.4 8.2 0.0 2.3 2 0 0 2 2 2 1 Ras family AAA_18 PF13238.1 gi|307595888|ref|YP_003902205.1| - 0.01 16.1 0.1 0.024 14.9 0.0 1.8 2 1 0 2 2 1 0 AAA domain SRPRB PF09439.5 gi|307595888|ref|YP_003902205.1| - 0.015 14.5 0.1 4.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF258 PF03193.11 gi|307595888|ref|YP_003902205.1| - 0.016 14.4 0.0 1.6 7.9 0.0 2.6 3 0 0 3 3 2 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|307595888|ref|YP_003902205.1| - 0.016 15.0 0.0 0.042 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|307595888|ref|YP_003902205.1| - 0.021 13.8 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.17 gi|307595888|ref|YP_003902205.1| - 0.025 13.4 0.0 0.039 12.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.1 gi|307595888|ref|YP_003902205.1| - 0.025 14.2 0.0 0.065 12.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Psu PF07455.6 gi|307595888|ref|YP_003902205.1| - 0.027 13.9 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Phage polarity suppression protein (Psu) TrwB_AAD_bind PF10412.4 gi|307595888|ref|YP_003902205.1| - 0.029 13.0 0.0 0.046 12.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.4 gi|307595888|ref|YP_003902205.1| - 0.031 13.2 0.0 0.19 10.6 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PIN PF01850.16 gi|307595888|ref|YP_003902205.1| - 0.031 14.5 0.1 0.23 11.7 0.0 2.1 2 0 0 2 2 2 0 PIN domain Arch_ATPase PF01637.13 gi|307595888|ref|YP_003902205.1| - 0.033 13.8 0.0 0.047 13.3 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase KAP_NTPase PF07693.9 gi|307595888|ref|YP_003902205.1| - 0.035 13.1 0.0 0.083 11.8 0.0 1.6 1 1 1 2 2 2 0 KAP family P-loop domain Septin PF00735.13 gi|307595888|ref|YP_003902205.1| - 0.039 12.9 0.3 0.059 12.3 0.2 1.5 1 1 0 1 1 1 0 Septin Thymidylate_kin PF02223.12 gi|307595888|ref|YP_003902205.1| - 0.042 13.2 0.0 0.075 12.3 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_33 PF13671.1 gi|307595888|ref|YP_003902205.1| - 0.046 13.6 0.1 0.067 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|307595888|ref|YP_003902205.1| - 0.054 13.0 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain NOG1 PF06858.9 gi|307595888|ref|YP_003902205.1| - 0.062 13.1 0.1 0.19 11.6 0.1 1.9 1 1 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) Arf PF00025.16 gi|307595888|ref|YP_003902205.1| - 0.065 12.4 1.2 4.3 6.5 0.1 2.5 2 1 0 2 2 2 0 ADP-ribosylation factor family APS_kinase PF01583.15 gi|307595888|ref|YP_003902205.1| - 0.078 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Herpes_Helicase PF02689.9 gi|307595888|ref|YP_003902205.1| - 0.15 9.8 0.0 0.21 9.2 0.0 1.2 1 0 0 1 1 1 0 Helicase MFS_1 PF07690.11 gi|307595889|ref|YP_003902206.1| - 1.7e-17 63.1 38.7 5.5e-13 48.3 8.4 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|307595889|ref|YP_003902206.1| - 0.0034 15.8 35.1 0.0033 15.8 11.6 2.7 1 1 1 2 2 2 2 MFS/sugar transport protein DUF3733 PF12534.3 gi|307595890|ref|YP_003902207.1| - 0.089 12.0 0.2 0.089 12.0 0.2 2.4 3 0 0 3 3 3 0 Leucine-rich repeat containing protein 8 DUF2530 PF10745.4 gi|307595890|ref|YP_003902207.1| - 2.4 8.2 6.1 11 6.1 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2530) PTS_2-RNA PF01885.11 gi|307595891|ref|YP_003902208.1| - 2.2e-39 134.7 0.0 2.9e-39 134.3 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.15 gi|307595891|ref|YP_003902208.1| - 0.13 11.6 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase catalytic domain Desulfoferrod_N PF06397.7 gi|307595891|ref|YP_003902208.1| - 0.21 10.9 1.0 0.49 9.8 0.7 1.7 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain CoA_trans PF01144.18 gi|307595893|ref|YP_003902210.1| - 2.1e-18 66.2 0.0 2.8e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Coenzyme A transferase CoA_trans PF01144.18 gi|307595894|ref|YP_003902211.1| - 4.8e-27 94.5 0.1 6e-27 94.2 0.1 1.1 1 0 0 1 1 1 1 Coenzyme A transferase ThiS PF02597.15 gi|307595895|ref|YP_003902212.1| - 9.3e-12 45.2 0.0 1.1e-11 44.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family SLBB PF10531.4 gi|307595895|ref|YP_003902212.1| - 0.017 15.0 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 SLBB domain Urm1 PF09138.6 gi|307595895|ref|YP_003902212.1| - 0.043 13.9 0.1 0.048 13.7 0.0 1.1 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) NUDIX PF00293.23 gi|307595897|ref|YP_003902214.1| - 1.4e-23 83.0 0.0 1.6e-23 82.8 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain Acylphosphatase PF00708.13 gi|307595898|ref|YP_003902215.1| - 2.9e-30 104.1 0.1 3.2e-30 104.0 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|307595898|ref|YP_003902215.1| - 0.032 13.8 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) Pkinase PF00069.20 gi|307595899|ref|YP_003902216.1| - 1.1e-36 126.3 0.0 1.5e-36 125.8 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|307595899|ref|YP_003902216.1| - 1.8e-23 82.9 0.0 2.7e-23 82.3 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Pox_ser-thr_kin PF05445.6 gi|307595899|ref|YP_003902216.1| - 0.015 14.1 0.0 0.029 13.1 0.0 1.4 1 0 0 1 1 1 0 Poxvirus serine/threonine protein kinase APH PF01636.18 gi|307595899|ref|YP_003902216.1| - 0.071 12.8 0.0 0.39 10.4 0.0 1.9 1 1 1 2 2 2 0 Phosphotransferase enzyme family Kdo PF06293.9 gi|307595899|ref|YP_003902216.1| - 0.12 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family FHA PF00498.21 gi|307595900|ref|YP_003902217.1| - 2e-15 56.6 0.0 3e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 FHA domain Ribosomal_S26e PF01283.14 gi|307595901|ref|YP_003902218.1| - 9.6e-32 109.5 1.4 1.1e-31 109.3 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e Nudix_N_2 PF14803.1 gi|307595901|ref|YP_003902218.1| - 0.0056 16.3 0.3 1.1 8.9 0.0 2.4 2 0 0 2 2 2 2 Nudix N-terminal zf-dskA_traR PF01258.12 gi|307595901|ref|YP_003902218.1| - 0.0074 16.0 0.3 1.7 8.4 0.0 2.4 2 0 0 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger PRP21_like_P PF12230.3 gi|307595901|ref|YP_003902218.1| - 0.26 10.7 1.1 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 Pre-mRNA splicing factor PRP21 like protein zf-ribbon_3 PF13248.1 gi|307595901|ref|YP_003902218.1| - 0.29 10.3 1.8 0.68 9.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.16 gi|307595902|ref|YP_003902219.1| - 1.5e-16 60.9 0.1 3.8e-15 56.4 0.0 2.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|307595902|ref|YP_003902219.1| - 1.3e-05 25.2 0.0 2.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Auto_anti-p27 PF06677.7 gi|307595902|ref|YP_003902219.1| - 0.088 12.5 0.2 0.43 10.3 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|307595902|ref|YP_003902219.1| - 0.11 12.2 0.1 0.11 12.2 0.1 2.8 3 1 0 3 3 3 0 Double zinc ribbon Molybdopterin PF00384.17 gi|307595904|ref|YP_003902221.1| - 2.8e-10 39.5 0.0 1.9e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|307595904|ref|YP_003902221.1| - 7.1e-06 25.8 0.1 0.00019 21.2 0.0 2.4 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain DAO PF01266.19 gi|307595905|ref|YP_003902222.1| - 2.6e-61 207.5 0.0 2.9e-61 207.3 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|307595905|ref|YP_003902222.1| - 1.1e-08 34.4 0.8 2.8e-07 29.7 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|307595905|ref|YP_003902222.1| - 2.5e-07 30.6 0.1 6e-07 29.3 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|307595905|ref|YP_003902222.1| - 7.4e-07 28.4 0.5 1.3e-06 27.6 0.1 1.6 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|307595905|ref|YP_003902222.1| - 9.6e-06 25.6 2.2 0.00013 21.9 1.6 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|307595905|ref|YP_003902222.1| - 3.9e-05 22.9 0.1 5.2e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|307595905|ref|YP_003902222.1| - 3.9e-05 22.8 1.2 5.3e-05 22.4 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|307595905|ref|YP_003902222.1| - 4.3e-05 23.7 0.1 0.023 14.9 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding GIDA PF01134.17 gi|307595905|ref|YP_003902222.1| - 0.00028 19.8 0.8 0.0016 17.4 0.1 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|307595905|ref|YP_003902222.1| - 0.00041 18.9 0.9 0.0019 16.7 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein 3HCDH_N PF02737.13 gi|307595905|ref|YP_003902222.1| - 0.00045 19.9 0.2 0.00081 19.0 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|307595905|ref|YP_003902222.1| - 0.0016 18.8 1.5 0.13 12.6 0.2 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|307595905|ref|YP_003902222.1| - 0.0025 17.8 0.6 0.015 15.3 0.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|307595905|ref|YP_003902222.1| - 0.0038 17.0 0.5 0.025 14.3 0.1 2.4 3 0 0 3 3 3 1 ThiF family Shikimate_DH PF01488.15 gi|307595905|ref|YP_003902222.1| - 0.0041 17.2 0.0 0.01 15.9 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GDI PF00996.13 gi|307595905|ref|YP_003902222.1| - 0.0054 15.0 0.1 0.013 13.8 0.0 1.6 2 0 0 2 2 2 1 GDP dissociation inhibitor ApbA PF02558.11 gi|307595905|ref|YP_003902222.1| - 0.0056 16.1 0.2 0.0093 15.4 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|307595905|ref|YP_003902222.1| - 0.01 15.2 0.4 0.018 14.4 0.3 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|307595905|ref|YP_003902222.1| - 0.012 15.3 0.1 0.033 13.9 0.0 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|307595905|ref|YP_003902222.1| - 0.029 13.3 0.1 0.049 12.5 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Saccharop_dh PF03435.13 gi|307595905|ref|YP_003902222.1| - 0.043 12.7 0.5 0.083 11.8 0.3 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|307595905|ref|YP_003902222.1| - 0.049 13.6 0.1 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain XdhC_C PF13478.1 gi|307595905|ref|YP_003902222.1| - 0.062 13.6 0.0 0.24 11.7 0.0 2.0 2 1 1 3 3 2 0 XdhC Rossmann domain DUF2984 PF11203.3 gi|307595905|ref|YP_003902222.1| - 0.098 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2984) Hydrolase_4 PF12146.3 gi|307595905|ref|YP_003902222.1| - 0.11 12.3 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase IlvN PF07991.7 gi|307595905|ref|YP_003902222.1| - 0.15 11.4 0.2 0.29 10.4 0.1 1.5 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|307595905|ref|YP_003902222.1| - 0.16 11.6 0.1 0.26 11.0 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.9 gi|307595905|ref|YP_003902222.1| - 0.25 9.8 2.0 0.41 9.1 0.2 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Amidohydro_3 PF07969.6 gi|307595906|ref|YP_003902223.1| - 2.3e-97 326.7 0.0 2.7e-97 326.5 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|307595906|ref|YP_003902223.1| - 1.4e-09 37.5 0.1 4.2e-09 36.0 0.0 1.8 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|307595906|ref|YP_003902223.1| - 1.3e-08 35.2 0.0 0.00021 21.3 0.0 3.2 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|307595906|ref|YP_003902223.1| - 2.2e-08 34.1 0.8 0.00095 18.9 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family Sarcoglycan_1 PF04790.8 gi|307595907|ref|YP_003902224.1| - 1.3 8.1 4.8 1.4 7.9 3.3 1.1 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein SdpI PF13630.1 gi|307595907|ref|YP_003902224.1| - 5.5 6.7 9.2 8.3 6.1 6.3 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family Acetyltransf_1 PF00583.19 gi|307595909|ref|YP_003902226.1| - 1.3e-18 66.8 0.1 2.5e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|307595909|ref|YP_003902226.1| - 5.3e-11 42.6 0.0 2.1e-10 40.7 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|307595909|ref|YP_003902226.1| - 6.9e-08 32.7 0.1 2.4e-07 31.0 0.1 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|307595909|ref|YP_003902226.1| - 1.2e-07 31.6 0.0 1.9e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|307595909|ref|YP_003902226.1| - 1.4e-06 27.9 0.0 3.1e-06 26.8 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|307595909|ref|YP_003902226.1| - 1e-05 25.5 0.0 2.5e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|307595909|ref|YP_003902226.1| - 0.00045 20.0 0.1 0.0074 16.1 0.0 2.2 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|307595909|ref|YP_003902226.1| - 0.00048 20.1 0.0 0.0007 19.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|307595909|ref|YP_003902226.1| - 0.00095 19.1 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|307595909|ref|YP_003902226.1| - 0.034 13.7 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MobB PF03205.9 gi|307595910|ref|YP_003902227.1| - 1.3e-08 34.6 0.2 2.1e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Clp1 PF06807.9 gi|307595910|ref|YP_003902227.1| - 0.00082 19.1 2.9 0.0044 16.8 0.6 2.8 2 1 0 2 2 2 1 Pre-mRNA cleavage complex II protein Clp1 AAA_10 PF12846.2 gi|307595910|ref|YP_003902227.1| - 0.034 13.6 0.1 0.06 12.7 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain GTP_EFTU PF00009.22 gi|307595910|ref|YP_003902227.1| - 0.037 13.4 0.4 0.078 12.3 0.3 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_22 PF13401.1 gi|307595910|ref|YP_003902227.1| - 0.063 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|307595910|ref|YP_003902227.1| - 0.081 12.7 0.0 4.1 7.1 0.0 2.2 2 0 0 2 2 2 0 Dynamin family DUF4147 PF13660.1 gi|307595911|ref|YP_003902228.1| - 4.5e-75 251.8 0.1 6e-75 251.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|307595911|ref|YP_003902228.1| - 2e-25 88.9 2.1 2e-25 88.9 1.5 2.0 2 0 0 2 2 2 1 MOFRL family SinI PF08671.5 gi|307595911|ref|YP_003902228.1| - 0.14 11.6 0.3 6.9 6.1 0.0 2.5 2 0 0 2 2 2 0 Anti-repressor SinI Translin PF01997.11 gi|307595912|ref|YP_003902229.1| - 2.1e-33 115.6 1.7 2.4e-33 115.4 1.1 1.0 1 0 0 1 1 1 1 Translin family DBINO PF13892.1 gi|307595912|ref|YP_003902229.1| - 0.022 14.8 0.0 0.39 10.7 0.0 2.1 2 0 0 2 2 2 0 DNA-binding domain Seryl_tRNA_N PF02403.17 gi|307595912|ref|YP_003902229.1| - 0.047 13.7 1.0 2.3 8.2 0.0 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF1932 PF09130.6 gi|307595912|ref|YP_003902229.1| - 0.048 13.3 0.3 0.57 9.9 0.1 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1932) VASP_tetra PF08776.6 gi|307595912|ref|YP_003902229.1| - 0.1 11.9 1.0 0.31 10.3 0.3 2.1 2 0 0 2 2 2 0 VASP tetramerisation domain HisKA PF00512.20 gi|307595912|ref|YP_003902229.1| - 0.16 12.0 1.9 1.1 9.3 0.4 2.2 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain LAGLIDADG_1 PF00961.14 gi|307595912|ref|YP_003902229.1| - 0.31 11.6 2.2 0.76 10.3 0.1 2.2 2 1 0 2 2 2 0 LAGLIDADG endonuclease AA_permease_2 PF13520.1 gi|307595913|ref|YP_003902230.1| - 1.4e-42 145.7 54.7 1.4e-42 145.7 37.9 2.6 1 1 2 3 3 3 1 Amino acid permease AA_permease PF00324.16 gi|307595913|ref|YP_003902230.1| - 2.3e-21 75.7 58.0 2.3e-21 75.7 40.2 2.4 1 1 1 2 2 2 1 Amino acid permease Nitroreductase PF00881.19 gi|307595914|ref|YP_003902231.1| - 6.2e-23 81.4 0.0 7.7e-23 81.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF2258 PF10015.4 gi|307595915|ref|YP_003902232.1| - 3.3e-24 84.4 1.9 3.3e-24 84.4 1.3 1.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) DUF211 PF02680.9 gi|307595916|ref|YP_003902233.1| - 4.7e-31 106.4 4.0 5.4e-31 106.2 2.8 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 BRCT PF00533.21 gi|307595916|ref|YP_003902233.1| - 0.087 12.9 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain VIT1 PF01988.14 gi|307595917|ref|YP_003902234.1| - 0.088 12.2 16.5 26 4.2 11.4 2.0 1 1 0 1 1 1 0 VIT family DUF4499 PF14934.1 gi|307595917|ref|YP_003902234.1| - 0.88 9.5 5.3 0.64 9.9 0.7 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4499) SID-1_RNA_chan PF13965.1 gi|307595917|ref|YP_003902234.1| - 1.4 6.9 7.2 1.8 6.6 5.0 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 BCLP PF12304.3 gi|307595917|ref|YP_003902234.1| - 3.5 6.9 8.3 1 8.7 2.8 1.9 2 0 0 2 2 2 0 Beta-casein like protein Dpy19 PF10034.4 gi|307595917|ref|YP_003902234.1| - 6.5 4.7 10.1 0.5 8.4 3.7 1.5 2 0 0 2 2 2 0 Q-cell neuroblast polarisation Trm112p PF03966.11 gi|307595918|ref|YP_003902235.1| - 1.5e-13 50.9 2.9 1.5e-13 50.8 1.4 1.5 2 0 0 2 2 2 1 Trm112p-like protein zf-ribbon_3 PF13248.1 gi|307595918|ref|YP_003902235.1| - 0.016 14.3 0.5 0.016 14.3 0.4 2.0 3 0 0 3 3 3 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|307595918|ref|YP_003902235.1| - 0.069 12.6 0.5 0.069 12.6 0.4 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|307595918|ref|YP_003902235.1| - 0.1 12.3 0.5 0.1 12.3 0.3 1.6 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF164 PF02591.10 gi|307595918|ref|YP_003902235.1| - 0.15 11.8 0.5 0.45 10.3 0.4 1.8 1 0 0 1 1 1 0 Putative zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|307595918|ref|YP_003902235.1| - 0.23 10.9 2.5 0.37 10.3 0.0 2.6 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|307595918|ref|YP_003902235.1| - 0.62 9.9 3.8 1.7 8.5 2.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_4 PF13894.1 gi|307595918|ref|YP_003902235.1| - 1.1 9.8 0.1 1.1 9.8 0.0 2.7 3 1 1 4 4 4 0 C2H2-type zinc finger FAD_binding_2 PF00890.19 gi|307595919|ref|YP_003902236.1| - 2.9e-109 365.7 0.0 3.5e-109 365.4 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|307595919|ref|YP_003902236.1| - 1.2e-44 151.3 0.0 2e-44 150.5 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|307595919|ref|YP_003902236.1| - 3.4e-07 30.3 0.0 8.6e-05 22.4 0.0 3.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|307595919|ref|YP_003902236.1| - 0.0088 15.1 1.1 0.82 8.7 0.1 2.7 3 0 0 3 3 3 2 Thi4 family DAO PF01266.19 gi|307595919|ref|YP_003902236.1| - 0.036 12.9 0.3 0.44 9.3 0.0 2.6 3 0 0 3 3 3 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|307595919|ref|YP_003902236.1| - 0.19 10.5 0.5 1.2 7.8 0.4 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Reo_sigmaC PF04582.7 gi|307595920|ref|YP_003902237.1| - 1.4e-05 24.4 5.7 0.026 13.7 0.8 2.2 2 0 0 2 2 2 2 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|307595920|ref|YP_003902237.1| - 3.7e-05 22.4 39.6 0.029 12.8 27.5 2.1 1 1 0 1 1 1 1 AAA domain Bacillus_HBL PF05791.6 gi|307595920|ref|YP_003902237.1| - 0.0003 20.2 25.0 0.015 14.7 5.8 3.5 1 1 2 3 3 3 2 Bacillus haemolytic enterotoxin (HBL) Baculo_PEP_C PF04513.7 gi|307595920|ref|YP_003902237.1| - 0.00031 20.5 13.5 0.0076 16.0 0.6 3.0 2 2 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|307595920|ref|YP_003902237.1| - 0.0012 18.6 33.9 0.011 15.5 8.1 3.7 2 2 1 3 3 3 2 Laminin Domain II FliJ PF02050.11 gi|307595920|ref|YP_003902237.1| - 0.0014 18.6 37.9 0.018 15.1 3.5 3.7 2 2 1 3 3 3 2 Flagellar FliJ protein ADIP PF11559.3 gi|307595920|ref|YP_003902237.1| - 0.0027 17.6 9.0 0.0027 17.6 6.2 3.9 1 1 3 4 4 4 1 Afadin- and alpha -actinin-Binding TPR_MLP1_2 PF07926.7 gi|307595920|ref|YP_003902237.1| - 0.0028 17.4 11.7 0.0028 17.4 8.1 3.9 2 1 2 4 4 4 1 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.17 gi|307595920|ref|YP_003902237.1| - 0.003 17.5 10.1 0.003 17.5 7.0 4.8 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain HsbA PF12296.3 gi|307595920|ref|YP_003902237.1| - 0.0035 17.2 3.7 0.16 11.8 0.1 3.4 2 1 1 3 3 3 1 Hydrophobic surface binding protein A DUF1192 PF06698.6 gi|307595920|ref|YP_003902237.1| - 0.012 15.4 5.6 0.012 15.4 3.9 6.7 5 3 2 7 7 6 0 Protein of unknown function (DUF1192) DUF948 PF06103.6 gi|307595920|ref|YP_003902237.1| - 0.013 15.3 15.1 0.63 9.9 0.5 4.1 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) TBPIP PF07106.8 gi|307595920|ref|YP_003902237.1| - 0.016 14.7 48.6 0.035 13.6 10.7 3.9 1 1 3 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4201 PF13870.1 gi|307595920|ref|YP_003902237.1| - 0.017 14.5 52.6 0.29 10.5 5.0 4.2 2 2 2 4 4 4 0 Domain of unknown function (DUF4201) CENP-F_leu_zip PF10473.4 gi|307595920|ref|YP_003902237.1| - 0.025 14.4 57.7 0.019 14.8 13.1 4.5 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2664 PF10867.3 gi|307595920|ref|YP_003902237.1| - 0.028 15.0 1.7 0.028 15.0 1.2 4.1 2 2 0 2 2 1 0 Protein of unknown function (DUF2664) NAAA-beta PF15508.1 gi|307595920|ref|YP_003902237.1| - 0.031 14.6 5.7 3.4 8.0 0.1 4.1 2 2 2 4 4 4 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase ERM PF00769.14 gi|307595920|ref|YP_003902237.1| - 0.054 13.0 45.7 0.13 11.7 9.9 3.0 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF3450 PF11932.3 gi|307595920|ref|YP_003902237.1| - 0.07 12.3 28.0 0.34 10.1 2.5 3.4 2 2 1 3 3 3 0 Protein of unknown function (DUF3450) Filament PF00038.16 gi|307595920|ref|YP_003902237.1| - 0.071 12.5 46.3 0.07 12.5 27.0 3.1 1 1 1 2 2 2 0 Intermediate filament protein Mnd1 PF03962.10 gi|307595920|ref|YP_003902237.1| - 0.071 12.7 42.5 0.075 12.6 6.5 3.8 1 1 2 4 4 4 0 Mnd1 family Metal_resist PF13801.1 gi|307595920|ref|YP_003902237.1| - 0.073 13.0 10.7 12 5.8 0.0 4.6 4 1 0 5 5 4 0 Heavy-metal resistance RTBV_P46 PF06216.6 gi|307595920|ref|YP_003902237.1| - 0.13 11.1 17.2 0.061 12.1 2.3 2.8 2 2 2 4 4 4 0 Rice tungro bacilliform virus P46 protein DUF972 PF06156.8 gi|307595920|ref|YP_003902237.1| - 0.14 12.5 42.7 0.25 11.7 3.2 4.9 2 2 3 5 5 5 0 Protein of unknown function (DUF972) Hrs_helical PF12210.3 gi|307595920|ref|YP_003902237.1| - 0.15 12.2 25.5 0.92 9.8 0.1 5.0 2 2 3 5 5 5 0 Hepatocyte growth factor-regulated tyrosine kinase substrate APG6 PF04111.7 gi|307595920|ref|YP_003902237.1| - 0.17 10.8 49.2 0.091 11.7 8.8 3.7 1 1 3 4 4 4 0 Autophagy protein Apg6 Cob_adeno_trans PF01923.13 gi|307595920|ref|YP_003902237.1| - 0.18 11.5 17.7 0.32 10.7 0.8 3.3 2 2 1 3 3 3 0 Cobalamin adenosyltransferase BRO1 PF03097.13 gi|307595920|ref|YP_003902237.1| - 0.19 10.4 10.3 0.027 13.2 0.6 2.7 1 1 0 2 2 2 0 BRO1-like domain DUF2353 PF09789.4 gi|307595920|ref|YP_003902237.1| - 0.23 10.6 42.2 0.014 14.6 10.1 2.2 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) WEMBL PF05701.6 gi|307595920|ref|YP_003902237.1| - 0.25 9.7 47.9 0.014 13.9 9.1 2.8 2 2 0 2 2 2 0 Weak chloroplast movement under blue light PLA2G12 PF06951.6 gi|307595920|ref|YP_003902237.1| - 0.28 10.7 2.6 6.5 6.3 0.1 3.0 2 2 2 4 4 2 0 Group XII secretory phospholipase A2 precursor (PLA2G12) NPV_P10 PF05531.7 gi|307595920|ref|YP_003902237.1| - 0.52 10.5 16.4 0.98 9.7 2.9 3.8 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein RmuC PF02646.11 gi|307595920|ref|YP_003902237.1| - 0.52 9.0 25.4 0.31 9.8 2.4 3.8 2 2 3 5 5 5 0 RmuC family DivIC PF04977.10 gi|307595920|ref|YP_003902237.1| - 0.6 9.6 54.3 0.18 11.3 2.9 6.7 3 2 4 7 7 6 0 Septum formation initiator GLE1 PF07817.8 gi|307595920|ref|YP_003902237.1| - 0.65 8.8 16.4 0.58 9.0 1.4 2.8 2 1 1 3 3 3 0 GLE1-like protein ATG16 PF08614.6 gi|307595920|ref|YP_003902237.1| - 0.73 9.6 48.3 1.1 8.9 12.3 4.1 2 2 1 3 3 3 0 Autophagy protein 16 (ATG16) MscS_porin PF12795.2 gi|307595920|ref|YP_003902237.1| - 0.84 8.9 34.4 0.019 14.2 3.1 3.0 2 1 0 2 2 2 0 Mechanosensitive ion channel porin domain IncA PF04156.9 gi|307595920|ref|YP_003902237.1| - 0.93 9.0 53.8 0.097 12.2 12.1 3.8 1 1 1 2 2 1 0 IncA protein DUF4062 PF13271.1 gi|307595920|ref|YP_003902237.1| - 1.4 9.0 7.7 41 4.2 0.2 4.5 4 1 0 4 4 3 0 Domain of unknown function (DUF4062) GAS PF13851.1 gi|307595920|ref|YP_003902237.1| - 2.2 7.4 52.8 0.051 12.7 10.1 3.4 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding STAT_alpha PF01017.15 gi|307595920|ref|YP_003902237.1| - 2.6 7.7 35.3 0.056 13.1 5.1 3.3 2 1 1 3 3 3 0 STAT protein, all-alpha domain Allexi_40kDa PF05549.6 gi|307595920|ref|YP_003902237.1| - 2.6 7.2 17.3 3 7.0 0.9 2.7 1 1 0 2 2 2 0 Allexivirus 40kDa protein DUF3584 PF12128.3 gi|307595920|ref|YP_003902237.1| - 2.8 5.1 42.9 0.18 9.0 6.9 2.7 1 1 1 3 3 3 0 Protein of unknown function (DUF3584) UPF0184 PF03670.8 gi|307595920|ref|YP_003902237.1| - 3.2 7.9 19.5 0.16 12.1 1.2 4.5 2 2 3 5 5 5 0 Uncharacterised protein family (UPF0184) DUF1002 PF06207.6 gi|307595920|ref|YP_003902237.1| - 3.3 6.9 22.1 14 4.9 4.8 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1002) TMF_TATA_bd PF12325.3 gi|307595920|ref|YP_003902237.1| - 3.6 7.3 51.9 0.1 12.3 12.3 4.8 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding FlaC_arch PF05377.6 gi|307595920|ref|YP_003902237.1| - 3.8 7.4 35.3 0.3 11.0 3.9 6.1 2 2 4 6 6 6 0 Flagella accessory protein C (FlaC) Spectrin PF00435.16 gi|307595920|ref|YP_003902237.1| - 3.8 7.8 31.9 0.74 10.1 6.6 4.5 2 2 3 5 5 5 0 Spectrin repeat Spc7 PF08317.6 gi|307595920|ref|YP_003902237.1| - 3.9 6.0 52.6 0.73 8.4 10.4 3.4 1 1 1 3 3 3 0 Spc7 kinetochore protein LOH1CR12 PF10158.4 gi|307595920|ref|YP_003902237.1| - 4 7.2 16.7 0.49 10.1 0.8 3.5 2 2 2 4 4 4 0 Tumour suppressor protein PMC2NT PF08066.7 gi|307595920|ref|YP_003902237.1| - 5.2 7.4 12.8 1.5 9.1 0.7 4.1 2 2 2 4 4 4 0 PMC2NT (NUC016) domain Tup_N PF08581.5 gi|307595920|ref|YP_003902237.1| - 5.5 7.2 34.1 0.79 9.9 0.2 6.0 2 2 4 6 6 6 0 Tup N-terminal FliD_C PF07195.7 gi|307595920|ref|YP_003902237.1| - 5.6 6.1 21.0 20 4.3 6.1 3.3 2 2 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Fib_alpha PF08702.5 gi|307595920|ref|YP_003902237.1| - 5.7 7.0 33.5 2.8 8.0 5.1 3.3 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family Filo_VP35 PF02097.10 gi|307595920|ref|YP_003902237.1| - 6.2 5.9 9.6 8.3 5.5 0.2 2.2 2 0 0 2 2 2 0 Filoviridae VP35 Atg14 PF10186.4 gi|307595920|ref|YP_003902237.1| - 7.1 5.4 56.1 3.8 6.3 11.3 3.6 1 1 2 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4140 PF13600.1 gi|307595920|ref|YP_003902237.1| - 7.6 7.0 34.6 1.5 9.3 2.2 5.9 2 2 3 5 5 4 0 N-terminal domain of unknown function (DUF4140) Nup54 PF13874.1 gi|307595920|ref|YP_003902237.1| - 9.3 5.9 39.1 1.8 8.2 1.5 4.6 2 2 3 5 5 5 0 Nucleoporin complex subunit 54 DUF1664 PF07889.7 gi|307595920|ref|YP_003902237.1| - 9.9 5.9 30.0 1.4 8.7 2.5 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) DUF373 PF04123.8 gi|307595921|ref|YP_003902238.1| - 9e-81 271.5 14.0 1.1e-80 271.2 9.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Neurensin PF14927.1 gi|307595921|ref|YP_003902238.1| - 0.044 13.1 0.6 0.13 11.6 0.4 1.9 1 0 0 1 1 1 0 Neurensin CoA_binding_3 PF13727.1 gi|307595921|ref|YP_003902238.1| - 3.5 7.4 12.6 0.29 10.9 0.4 2.3 2 0 0 2 2 2 0 CoA-binding domain UPF0020 PF01170.13 gi|307595922|ref|YP_003902239.1| - 2.7e-16 59.6 0.0 1.7e-15 57.0 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|307595922|ref|YP_003902239.1| - 5.5e-14 52.2 0.0 1.2e-13 51.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|307595922|ref|YP_003902239.1| - 1.9e-10 40.6 0.0 6.9e-08 32.2 0.0 2.2 2 0 0 2 2 2 2 DNA methylase MethyltransfD12 PF02086.10 gi|307595922|ref|YP_003902239.1| - 8.6e-06 25.3 0.2 2.6e-05 23.8 0.0 1.8 1 1 1 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.1 gi|307595922|ref|YP_003902239.1| - 0.013 15.1 0.0 0.077 12.5 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|307595922|ref|YP_003902239.1| - 0.022 15.2 0.0 0.24 11.9 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|307595922|ref|YP_003902239.1| - 0.025 13.9 0.1 0.27 10.6 0.0 2.5 2 1 0 2 2 2 0 Conserved hypothetical protein 95 N6_Mtase PF02384.11 gi|307595922|ref|YP_003902239.1| - 0.18 10.8 0.0 1.6 7.7 0.0 2.0 1 1 0 1 1 1 0 N-6 DNA Methylase OMPdecase PF00215.19 gi|307595923|ref|YP_003902240.1| - 1.2e-24 86.9 1.6 1.5e-24 86.6 1.1 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|307595923|ref|YP_003902240.1| - 0.00031 19.8 0.9 0.0034 16.5 0.6 2.2 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|307595923|ref|YP_003902240.1| - 0.0046 16.5 0.4 0.054 13.0 0.0 2.1 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain DUF556 PF04476.8 gi|307595923|ref|YP_003902240.1| - 0.013 14.7 1.1 0.066 12.4 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF556) FATC PF02260.15 gi|307595923|ref|YP_003902240.1| - 0.021 14.2 0.5 0.14 11.5 0.1 2.4 3 0 0 3 3 3 0 FATC domain MCPsignal PF00015.16 gi|307595924|ref|YP_003902241.1| - 0.025 14.1 0.2 0.042 13.3 0.0 1.4 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Prefoldin PF02996.12 gi|307595924|ref|YP_003902241.1| - 0.031 13.9 0.9 2.5 7.7 0.2 2.2 2 0 0 2 2 2 0 Prefoldin subunit MerR-DNA-bind PF09278.6 gi|307595924|ref|YP_003902241.1| - 0.056 13.8 0.0 2.3 8.7 0.0 2.2 2 0 0 2 2 2 0 MerR, DNA binding Cortex-I_coil PF09304.5 gi|307595924|ref|YP_003902241.1| - 0.079 13.0 0.5 14 5.7 0.0 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil BLOC1_2 PF10046.4 gi|307595924|ref|YP_003902241.1| - 0.083 13.0 1.6 1.8 8.7 0.1 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 tRNA_NucTransf2 PF09249.6 gi|307595925|ref|YP_003902242.1| - 8.3e-41 138.4 0.0 1.6e-40 137.4 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|307595925|ref|YP_003902242.1| - 4.5e-09 36.5 0.0 1.3e-08 35.0 0.0 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain Pescadillo_N PF06732.6 gi|307595925|ref|YP_003902242.1| - 0.1 11.8 0.1 0.38 9.9 0.1 1.8 2 0 0 2 2 2 0 Pescadillo N-terminus RPN7 PF10602.4 gi|307595926|ref|YP_003902243.1| - 0.0075 15.6 0.6 0.024 14.0 0.0 2.1 2 0 0 2 2 2 1 26S proteasome subunit RPN7 PMEI PF04043.10 gi|307595926|ref|YP_003902243.1| - 0.061 13.2 0.1 0.14 12.0 0.1 1.6 1 0 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor TPR_12 PF13424.1 gi|307595926|ref|YP_003902243.1| - 0.11 12.4 5.4 2.8 7.9 0.3 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|307595926|ref|YP_003902243.1| - 0.19 11.7 0.8 1.2 9.1 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|307595926|ref|YP_003902243.1| - 0.22 12.2 1.2 21 6.1 0.0 3.8 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|307595926|ref|YP_003902243.1| - 0.37 10.8 4.5 6.2 6.9 0.2 3.4 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|307595926|ref|YP_003902243.1| - 0.83 10.3 3.9 63 4.4 0.0 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_11 PF13414.1 gi|307595926|ref|YP_003902243.1| - 1.4 8.6 9.3 1.6 8.4 0.5 3.6 3 2 1 4 4 4 0 TPR repeat NTP_transferase PF00483.18 gi|307595927|ref|YP_003902244.1| - 4.2e-39 134.3 0.0 5.2e-39 134.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|307595927|ref|YP_003902244.1| - 5.6e-15 54.0 10.9 2.1e-07 30.1 0.6 3.8 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|307595927|ref|YP_003902244.1| - 4.8e-07 29.9 0.0 6.5e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|307595927|ref|YP_003902244.1| - 5.9e-07 28.9 3.2 0.0011 18.4 0.1 2.9 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase Ribosomal_S13 PF00416.17 gi|307595928|ref|YP_003902245.1| - 5.3e-27 94.3 0.0 6.5e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH PF00633.18 gi|307595928|ref|YP_003902245.1| - 0.085 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Acetyltransf_1 PF00583.19 gi|307595929|ref|YP_003902246.1| - 3.6e-11 42.9 0.1 5.6e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|307595929|ref|YP_003902246.1| - 3.6e-09 36.7 0.0 4.6e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|307595929|ref|YP_003902246.1| - 1e-07 32.0 0.0 1.4e-07 31.5 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|307595929|ref|YP_003902246.1| - 8.2e-07 29.1 0.0 1.5e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|307595929|ref|YP_003902246.1| - 3e-06 27.4 0.0 4e-06 27.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|307595929|ref|YP_003902246.1| - 0.00011 21.8 0.0 0.00037 20.2 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|307595929|ref|YP_003902246.1| - 0.00012 21.8 0.0 0.00022 21.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|307595929|ref|YP_003902246.1| - 0.00046 20.0 0.0 0.0032 17.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|307595929|ref|YP_003902246.1| - 0.04 13.8 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|307595929|ref|YP_003902246.1| - 0.045 13.6 0.0 0.062 13.1 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain EMG1 PF03587.9 gi|307595930|ref|YP_003902247.1| - 1.3e-43 148.7 0.0 1.5e-43 148.4 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase SIS PF01380.17 gi|307595931|ref|YP_003902248.1| - 6.9e-44 148.6 0.9 9.1e-29 99.7 0.3 2.5 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|307595931|ref|YP_003902248.1| - 8.2e-27 93.7 0.1 1.6e-26 92.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|307595931|ref|YP_003902248.1| - 1.3e-22 79.8 0.0 2.4e-22 78.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|307595931|ref|YP_003902248.1| - 7.7e-21 74.1 0.1 4.3e-16 58.5 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|307595931|ref|YP_003902248.1| - 1.1e-06 28.3 0.9 3.4e-05 23.5 0.2 2.6 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.1 gi|307595931|ref|YP_003902248.1| - 0.00038 19.2 0.0 0.00056 18.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Hexapep PF00132.19 gi|307595932|ref|YP_003902249.1| - 4.6e-16 57.5 13.3 1.4e-07 30.6 1.5 5.3 2 1 4 6 6 6 6 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.18 gi|307595932|ref|YP_003902249.1| - 7.9e-12 45.0 0.0 1.1e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.1 gi|307595932|ref|YP_003902249.1| - 1.9e-07 30.5 11.3 0.018 14.5 0.0 4.8 2 1 3 5 5 5 4 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|307595932|ref|YP_003902249.1| - 1.2e-05 25.4 0.0 1.7e-05 24.9 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain PCNA_N PF00705.13 gi|307595934|ref|YP_003902251.1| - 5.7e-14 51.7 0.2 2.5e-13 49.6 0.0 2.0 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|307595934|ref|YP_003902251.1| - 3.3e-07 30.2 0.4 1.4e-06 28.2 0.1 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|307595934|ref|YP_003902251.1| - 0.00075 18.6 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Rad9 PEP-utilisers_N PF05524.8 gi|307595934|ref|YP_003902251.1| - 0.057 13.2 0.6 0.094 12.5 0.4 1.3 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal Daxx PF03344.10 gi|307595934|ref|YP_003902251.1| - 2.9 6.2 8.9 3.7 5.9 6.1 1.1 1 0 0 1 1 1 0 Daxx Family DUF1743 PF08489.6 gi|307595935|ref|YP_003902252.1| - 2.9e-20 72.1 0.0 5.8e-20 71.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) Rad50_zn_hook PF04423.9 gi|307595935|ref|YP_003902252.1| - 0.066 12.6 0.1 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.2 gi|307595935|ref|YP_003902252.1| - 0.094 12.5 0.9 0.17 11.6 0.6 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|307595935|ref|YP_003902252.1| - 0.15 11.7 1.2 0.32 10.6 0.9 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|307595935|ref|YP_003902252.1| - 0.15 11.5 0.1 0.3 10.5 0.1 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.6 gi|307595935|ref|YP_003902252.1| - 0.29 10.6 5.0 0.49 9.9 3.5 1.3 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|307595935|ref|YP_003902252.1| - 0.68 9.1 6.9 0.09 11.9 1.6 1.9 2 0 0 2 2 2 0 Transcription factor zinc-finger RestrictionSfiI PF11487.3 gi|307595936|ref|YP_003902253.1| - 0.018 14.2 0.0 0.018 14.2 0.0 1.0 1 0 0 1 1 1 0 Type II restriction enzyme SfiI Trehalose_PPase PF02358.11 gi|307595937|ref|YP_003902254.1| - 2.2e-07 30.0 0.0 8.1e-07 28.1 0.0 1.8 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.7 gi|307595937|ref|YP_003902254.1| - 1.3e-06 28.1 0.0 2.7e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|307595937|ref|YP_003902254.1| - 0.00024 21.3 0.1 0.0021 18.2 0.0 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase DUF3097 PF11296.3 gi|307595937|ref|YP_003902254.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3097) DUF521 PF04412.8 gi|307595938|ref|YP_003902255.1| - 8.2e-92 307.7 0.0 1e-91 307.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Acid_phosphat_B PF03767.9 gi|307595939|ref|YP_003902256.1| - 2.4e-11 43.4 0.0 3.1e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) HAD_2 PF13419.1 gi|307595939|ref|YP_003902256.1| - 3.7e-07 30.5 0.1 0.00015 22.0 0.0 2.0 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|307595939|ref|YP_003902256.1| - 9.8e-06 26.1 0.0 0.011 16.1 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|307595939|ref|YP_003902256.1| - 0.00013 21.7 0.0 0.00031 20.5 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF2410 PF10307.4 gi|307595939|ref|YP_003902256.1| - 0.00059 19.2 0.0 0.0008 18.8 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2410) Hydrolase_3 PF08282.7 gi|307595939|ref|YP_003902256.1| - 0.013 15.0 0.1 0.041 13.4 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF2608 PF11019.3 gi|307595939|ref|YP_003902256.1| - 0.017 14.1 0.0 0.032 13.2 0.0 1.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2608) GATase_3 PF07685.9 gi|307595940|ref|YP_003902257.1| - 1.1e-11 44.6 0.0 1.8e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|307595940|ref|YP_003902257.1| - 4.1e-08 32.8 0.3 1.6e-07 30.9 0.2 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|307595940|ref|YP_003902257.1| - 2.3e-06 27.3 0.5 0.00082 19.0 0.4 2.5 1 1 0 1 1 1 1 AAA domain AAA_31 PF13614.1 gi|307595940|ref|YP_003902257.1| - 0.031 14.2 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain GATase_5 PF13507.1 gi|307595940|ref|YP_003902257.1| - 0.065 12.1 0.0 0.13 11.0 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain BPL_N PF09825.4 gi|307595940|ref|YP_003902257.1| - 0.15 10.8 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal SecA_DEAD PF07517.9 gi|307595940|ref|YP_003902257.1| - 0.16 11.2 0.2 0.26 10.5 0.1 1.2 1 0 0 1 1 1 0 SecA DEAD-like domain Abi PF02517.11 gi|307595941|ref|YP_003902258.1| - 3e-13 49.6 4.2 3e-13 49.6 2.9 2.7 1 1 1 2 2 2 1 CAAX protease self-immunity DNA_pol_B PF00136.16 gi|307595942|ref|YP_003902259.1| - 1.4e-83 281.2 0.0 1.9e-83 280.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|307595942|ref|YP_003902259.1| - 1.6e-35 122.5 0.6 3.5e-35 121.4 0.4 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|307595942|ref|YP_003902259.1| - 3.6e-05 23.3 0.0 7.7e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|307595942|ref|YP_003902259.1| - 5e-05 23.1 0.1 0.00016 21.5 0.1 1.8 1 0 0 1 1 1 1 RNase_H superfamily DUF2286 PF10051.4 gi|307595943|ref|YP_003902260.1| - 1.8e-38 131.3 5.6 2e-38 131.1 3.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Pox_ser-thr_kin PF05445.6 gi|307595943|ref|YP_003902260.1| - 0.045 12.5 2.4 0.4 9.4 0.2 1.9 1 1 1 2 2 2 0 Poxvirus serine/threonine protein kinase TCTP PF00838.12 gi|307595943|ref|YP_003902260.1| - 0.069 13.1 3.1 7.1 6.6 2.2 2.2 1 1 0 1 1 1 0 Translationally controlled tumour protein CDP-OH_P_transf PF01066.16 gi|307595944|ref|YP_003902261.1| - 7.1e-12 45.5 16.8 5.1e-11 42.7 11.6 2.1 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase PadR PF03551.9 gi|307595945|ref|YP_003902262.1| - 1e-08 34.7 0.0 1.5e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_12 PF08461.5 gi|307595945|ref|YP_003902262.1| - 0.011 15.4 0.2 0.017 14.8 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|307595945|ref|YP_003902262.1| - 0.037 13.7 0.4 0.11 12.1 0.2 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_33 PF13592.1 gi|307595945|ref|YP_003902262.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DUF3043 PF11241.3 gi|307595945|ref|YP_003902262.1| - 0.15 11.6 0.1 0.2 11.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) ELFV_dehydrog PF00208.16 gi|307595946|ref|YP_003902263.1| - 1.3e-71 241.0 0.2 1.6e-71 240.7 0.2 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|307595946|ref|YP_003902263.1| - 1.3e-52 176.7 0.0 2.1e-52 176.1 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|307595946|ref|YP_003902263.1| - 0.0013 17.9 0.0 0.0022 17.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|307595946|ref|YP_003902263.1| - 0.038 13.8 0.6 0.074 12.9 0.4 1.6 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Bac_GDH PF05088.7 gi|307595946|ref|YP_003902263.1| - 0.073 10.4 0.0 0.1 10.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase Lactamase_B PF00753.22 gi|307595949|ref|YP_003902266.1| - 0.0046 16.6 0.0 0.0046 16.6 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily CTP_transf_2 PF01467.21 gi|307595950|ref|YP_003902267.1| - 1.3e-11 44.8 0.0 2e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_synt PF00285.16 gi|307595951|ref|YP_003902268.1| - 1.6e-136 454.7 0.0 1.8e-136 454.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase DUF2087 PF09860.4 gi|307595952|ref|YP_003902269.1| - 0.099 12.4 0.2 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2087) DUF2624 PF11116.3 gi|307595952|ref|YP_003902269.1| - 0.11 12.9 0.3 0.13 12.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2624) Med26 PF08711.6 gi|307595952|ref|YP_003902269.1| - 0.21 11.1 0.9 16 5.1 0.1 2.5 3 0 0 3 3 3 0 TFIIS helical bundle-like domain DUF91 PF01939.11 gi|307595954|ref|YP_003902271.1| - 2.9e-57 193.4 0.0 3.6e-57 193.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|307595954|ref|YP_003902271.1| - 0.0006 19.7 0.1 0.00087 19.2 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Mrr_cat PF04471.7 gi|307595954|ref|YP_003902271.1| - 0.00098 18.9 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease DUF1703 PF08011.6 gi|307595954|ref|YP_003902271.1| - 0.0027 17.4 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1703) UPF0102 PF02021.12 gi|307595954|ref|YP_003902271.1| - 0.0028 17.5 0.1 0.0074 16.1 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 HSDR_N PF04313.9 gi|307595954|ref|YP_003902271.1| - 0.0034 17.1 0.1 0.006 16.3 0.0 1.5 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Cas_Cas4 PF01930.12 gi|307595954|ref|YP_003902271.1| - 0.0054 16.6 0.0 0.0088 15.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 HSDR_N_2 PF13588.1 gi|307595954|ref|YP_003902271.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) W_rich_C PF07483.6 gi|307595955|ref|YP_003902272.1| - 0.036 13.7 0.7 0.062 12.9 0.3 1.4 1 1 0 1 1 1 0 Tryptophan-rich Synechocystis species C-terminal domain DUF95 PF01944.12 gi|307595955|ref|YP_003902272.1| - 0.12 11.9 11.4 0.19 11.3 7.9 1.4 1 0 0 1 1 1 0 Integral membrane protein DUF95 Pribosyltran PF00156.22 gi|307595956|ref|YP_003902273.1| - 3.6e-21 75.1 0.1 6.5e-21 74.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|307595956|ref|YP_003902273.1| - 0.0038 16.4 0.0 0.006 15.8 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase S10_plectin PF03501.10 gi|307595956|ref|YP_003902273.1| - 0.1 12.4 0.3 0.65 9.9 0.0 2.0 2 0 0 2 2 2 0 Plectin/S10 domain EamA PF00892.15 gi|307595957|ref|YP_003902274.1| - 1.8e-19 70.0 42.1 5.8e-11 42.5 12.0 2.8 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|307595957|ref|YP_003902274.1| - 0.00045 20.3 40.3 0.00091 19.4 3.8 4.0 1 1 3 4 4 4 2 Multidrug resistance efflux transporter ERCC4 PF02732.10 gi|307595958|ref|YP_003902275.1| - 6.1e-20 71.4 0.1 1.2e-19 70.4 0.0 1.5 2 0 0 2 2 2 1 ERCC4 domain HHH_5 PF14520.1 gi|307595958|ref|YP_003902275.1| - 4.7e-05 23.4 0.1 0.00017 21.7 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|307595958|ref|YP_003902275.1| - 0.00013 21.4 0.0 0.00039 19.9 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|307595958|ref|YP_003902275.1| - 0.012 15.6 0.0 0.041 13.9 0.0 2.0 1 0 0 1 1 1 0 IMS family HHH motif 5_3_exonuc PF01367.15 gi|307595958|ref|YP_003902275.1| - 0.062 13.5 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.11 gi|307595958|ref|YP_003902275.1| - 0.091 12.8 0.0 5.2 7.2 0.0 2.5 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family TFIIS_C PF01096.13 gi|307595959|ref|YP_003902276.1| - 9.6e-06 25.1 1.4 1.2e-05 24.8 1.0 1.2 1 0 0 1 1 1 1 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|307595959|ref|YP_003902276.1| - 0.0017 17.5 4.1 0.11 11.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|307595959|ref|YP_003902276.1| - 0.0019 18.2 0.3 1.3 9.1 0.1 2.1 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.3 gi|307595959|ref|YP_003902276.1| - 0.0049 16.7 0.8 0.097 12.6 0.1 2.1 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF929 PF06053.6 gi|307595959|ref|YP_003902276.1| - 0.005 15.9 0.2 0.005 15.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF929) zinc_ribbon_2 PF13240.1 gi|307595959|ref|YP_003902276.1| - 0.016 14.6 4.5 0.64 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|307595959|ref|YP_003902276.1| - 0.037 14.3 0.8 0.047 13.9 0.6 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar Cys_rich_CPXG PF14255.1 gi|307595959|ref|YP_003902276.1| - 0.039 13.7 1.5 0.12 12.2 1.1 1.7 1 1 0 1 1 1 0 Cysteine-rich CPXCG Elf1 PF05129.8 gi|307595959|ref|YP_003902276.1| - 0.056 13.1 0.5 0.059 13.0 0.3 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-DNA_Pol PF08996.5 gi|307595959|ref|YP_003902276.1| - 0.058 12.7 0.5 0.059 12.7 0.4 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zinc_ribbon_5 PF13719.1 gi|307595959|ref|YP_003902276.1| - 0.061 12.9 6.0 1.2 8.7 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|307595959|ref|YP_003902276.1| - 0.1 12.5 1.0 6.2 6.8 0.3 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|307595959|ref|YP_003902276.1| - 0.12 11.8 2.9 0.73 9.3 0.2 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger CpXC PF14353.1 gi|307595959|ref|YP_003902276.1| - 0.13 12.2 1.9 2.4 8.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein DNA_RNApol_7kD PF03604.8 gi|307595959|ref|YP_003902276.1| - 0.14 11.6 4.1 6.2 6.3 0.9 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF951 PF06107.6 gi|307595959|ref|YP_003902276.1| - 0.18 11.3 0.6 0.44 10.1 0.4 1.7 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_4 PF13717.1 gi|307595959|ref|YP_003902276.1| - 0.19 11.4 7.3 2.5 7.8 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-FCS PF06467.9 gi|307595959|ref|YP_003902276.1| - 0.28 10.8 3.5 1.7 8.3 0.9 2.2 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-C2H2_4 PF13894.1 gi|307595959|ref|YP_003902276.1| - 0.43 11.0 3.3 9 6.8 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-AN1 PF01428.11 gi|307595959|ref|YP_003902276.1| - 0.47 10.3 3.3 4.6 7.1 0.5 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-C2H2 PF00096.21 gi|307595959|ref|YP_003902276.1| - 0.66 10.4 7.4 6.8 7.2 1.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|307595959|ref|YP_003902276.1| - 0.66 10.3 3.2 22 5.5 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-NADH-PPase PF09297.6 gi|307595959|ref|YP_003902276.1| - 0.71 9.4 4.8 0.55 9.7 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Sgf11 PF08209.6 gi|307595959|ref|YP_003902276.1| - 0.73 9.1 5.4 3.4 7.0 0.9 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) UPF0547 PF10571.4 gi|307595959|ref|YP_003902276.1| - 0.91 9.2 4.5 11 5.7 0.6 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|307595959|ref|YP_003902276.1| - 1.4 8.6 4.4 2.1 8.1 0.5 2.1 2 0 0 2 2 2 0 Nudix N-terminal CBFD_NFYB_HMF PF00808.18 gi|307595960|ref|YP_003902277.1| - 2.7e-14 52.9 0.1 3.1e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|307595960|ref|YP_003902277.1| - 1e-11 44.7 0.0 1.2e-11 44.5 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|307595960|ref|YP_003902277.1| - 1e-05 25.6 0.1 1.2e-05 25.4 0.1 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TAF PF02969.12 gi|307595960|ref|YP_003902277.1| - 3.2e-05 23.7 0.1 3.4e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) PCP_red PF08369.5 gi|307595960|ref|YP_003902277.1| - 0.0055 16.5 0.5 0.085 12.7 0.1 2.1 2 0 0 2 2 2 1 Proto-chlorophyllide reductase 57 kD subunit TIMELESS PF04821.9 gi|307595960|ref|YP_003902277.1| - 0.0063 15.8 0.0 0.0072 15.6 0.0 1.0 1 0 0 1 1 1 1 Timeless protein TFIID-18kDa PF02269.11 gi|307595960|ref|YP_003902277.1| - 0.0083 15.9 0.0 0.0094 15.7 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit TFIID-31kDa PF02291.10 gi|307595960|ref|YP_003902277.1| - 0.013 15.2 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.8 gi|307595960|ref|YP_003902277.1| - 0.014 15.1 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated AdoMet_dc PF02675.10 gi|307595961|ref|YP_003902278.1| - 1.1e-32 112.1 0.0 1.2e-32 111.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.1 gi|307595961|ref|YP_003902278.1| - 0.034 13.8 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Stage VI sporulation protein F DUF2480 PF10652.4 gi|307595961|ref|YP_003902278.1| - 0.12 11.9 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2480) Methyltransf_26 PF13659.1 gi|307595962|ref|YP_003902279.1| - 6.9e-05 22.8 0.0 9.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|307595962|ref|YP_003902279.1| - 0.00044 19.8 0.0 0.00068 19.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 CMAS PF02353.15 gi|307595962|ref|YP_003902279.1| - 0.0019 17.3 0.0 0.0022 17.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.1 gi|307595962|ref|YP_003902279.1| - 0.01 15.4 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.11 gi|307595962|ref|YP_003902279.1| - 0.089 11.8 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase Diphthamide_syn PF01866.12 gi|307595963|ref|YP_003902280.1| - 7.1e-42 143.7 0.0 1e-41 143.1 0.0 1.2 1 0 0 1 1 1 1 Putative diphthamide synthesis protein ArgK PF03308.11 gi|307595963|ref|YP_003902280.1| - 0.21 10.3 0.0 4 6.1 0.0 2.0 1 1 1 2 2 2 0 ArgK protein Cpn60_TCP1 PF00118.19 gi|307595964|ref|YP_003902281.1| - 1.3e-168 561.6 7.0 1.5e-168 561.4 4.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Histone PF00125.19 gi|307595964|ref|YP_003902281.1| - 0.11 12.6 0.4 12 6.1 0.0 3.7 4 0 0 4 4 4 0 Core histone H2A/H2B/H3/H4 DUF3422 PF11902.3 gi|307595965|ref|YP_003902282.1| - 0.74 8.6 5.2 0.23 10.2 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3422) T2SE PF00437.15 gi|307595966|ref|YP_003902283.1| - 2.2e-21 75.9 0.1 3.9e-21 75.1 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|307595966|ref|YP_003902283.1| - 0.00031 21.5 0.0 0.0013 19.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|307595966|ref|YP_003902283.1| - 0.002 18.1 0.0 0.0063 16.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|307595966|ref|YP_003902283.1| - 0.005 16.3 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|307595966|ref|YP_003902283.1| - 0.0056 16.5 0.0 0.015 15.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|307595966|ref|YP_003902283.1| - 0.01 15.9 0.2 0.17 12.0 0.0 2.6 2 2 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|307595966|ref|YP_003902283.1| - 0.017 15.4 0.3 0.054 13.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|307595966|ref|YP_003902283.1| - 0.017 14.2 0.1 0.045 12.9 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|307595966|ref|YP_003902283.1| - 0.018 15.0 0.0 0.05 13.5 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|307595966|ref|YP_003902283.1| - 0.018 15.0 0.0 0.049 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.1 gi|307595966|ref|YP_003902283.1| - 0.034 14.4 0.2 0.11 12.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|307595966|ref|YP_003902283.1| - 0.063 13.0 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain ABC_tran PF00005.22 gi|307595966|ref|YP_003902283.1| - 0.072 13.3 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter KTI12 PF08433.5 gi|307595966|ref|YP_003902283.1| - 0.081 12.1 0.0 0.23 10.6 0.0 1.8 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_24 PF13479.1 gi|307595966|ref|YP_003902283.1| - 0.089 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain HTH_12 PF08461.5 gi|307595967|ref|YP_003902284.1| - 0.00056 19.5 0.4 0.13 11.9 0.0 2.6 2 0 0 2 2 2 2 Ribonuclease R winged-helix domain TFIIB PF00382.14 gi|307595967|ref|YP_003902284.1| - 0.0007 19.3 0.3 0.021 14.6 0.0 2.8 2 1 1 3 3 3 1 Transcription factor TFIIB repeat MerR PF00376.18 gi|307595967|ref|YP_003902284.1| - 0.021 14.4 0.1 0.048 13.2 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein MerR_1 PF13411.1 gi|307595967|ref|YP_003902284.1| - 0.057 13.1 0.0 0.17 11.6 0.0 1.8 1 0 0 1 1 1 0 MerR HTH family regulatory protein Lsm_C PF14894.1 gi|307595969|ref|YP_003902286.1| - 9e-26 89.1 1.1 2.3e-25 87.8 0.3 1.9 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.17 gi|307595969|ref|YP_003902286.1| - 2.8e-08 33.1 2.6 3.1e-08 33.0 1.0 1.6 2 0 0 2 2 2 1 LSM domain Gemin6 PF06372.7 gi|307595969|ref|YP_003902286.1| - 1.5e-05 24.3 0.1 1.9e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Gemin6 protein SM-ATX PF14438.1 gi|307595969|ref|YP_003902286.1| - 2.7e-05 24.0 0.2 4e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain BPL_C PF02237.12 gi|307595969|ref|YP_003902286.1| - 0.0064 16.1 0.1 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain TGT PF01702.13 gi|307595970|ref|YP_003902287.1| - 2.8e-52 177.3 0.0 4.1e-52 176.8 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase HEAT_2 PF13646.1 gi|307595970|ref|YP_003902287.1| - 0.1 12.9 0.1 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 HEAT repeats PAC2 PF09754.4 gi|307595971|ref|YP_003902288.1| - 2.5e-30 105.9 0.0 2.9e-30 105.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PLC-beta_C PF08703.5 gi|307595971|ref|YP_003902288.1| - 0.067 12.8 0.2 0.097 12.3 0.1 1.1 1 0 0 1 1 1 0 PLC-beta C terminal Mst1_SARAH PF11629.3 gi|307595971|ref|YP_003902288.1| - 0.15 11.9 0.6 0.26 11.1 0.4 1.4 1 0 0 1 1 1 0 C terminal SARAH domain of Mst1 Ribosomal_S17e PF00833.13 gi|307595972|ref|YP_003902289.1| - 2.7e-19 69.0 0.0 2.8e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 Imm16 PF15565.1 gi|307595972|ref|YP_003902289.1| - 0.094 12.5 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Immunity protein 16 HSP20 PF00011.16 gi|307595973|ref|YP_003902290.1| - 1.8e-12 47.0 2.0 6e-11 42.0 1.4 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|307595973|ref|YP_003902290.1| - 1.5e-05 25.4 0.2 2.4e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 CS domain tRNA-synt_1g PF09334.6 gi|307595974|ref|YP_003902291.1| - 4.3e-144 479.9 0.0 5.3e-144 479.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|307595974|ref|YP_003902291.1| - 1.1e-13 50.1 0.0 7.8e-07 27.4 0.0 4.0 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|307595974|ref|YP_003902291.1| - 0.00037 20.2 0.2 0.0012 18.5 0.0 1.9 3 0 0 3 3 3 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|307595974|ref|YP_003902291.1| - 0.0006 19.0 0.0 0.018 14.1 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain TF_Zn_Ribbon PF08271.7 gi|307595974|ref|YP_003902291.1| - 0.061 12.6 3.6 0.14 11.5 1.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding tRNA-synt_1f PF01921.13 gi|307595974|ref|YP_003902291.1| - 0.11 11.2 0.0 1.5 7.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf-ribbon_3 PF13248.1 gi|307595974|ref|YP_003902291.1| - 0.23 10.7 7.1 3.6 6.9 2.9 2.9 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|307595974|ref|YP_003902291.1| - 0.33 10.7 4.4 1.4 8.8 3.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|307595974|ref|YP_003902291.1| - 0.61 9.6 8.0 5.5 6.6 0.1 3.5 3 1 0 3 3 3 0 zinc-ribbon domain dUTPase PF00692.14 gi|307595975|ref|YP_003902292.1| - 3.1e-14 52.5 0.0 3.2e-13 49.2 0.0 2.0 1 1 1 2 2 2 1 dUTPase Fucose_iso_C PF02952.12 gi|307595976|ref|YP_003902293.1| - 1.9e-05 24.2 0.4 0.00022 20.7 0.0 2.4 2 1 1 3 3 3 2 L-fucose isomerase, C-terminal domain PALP PF00291.20 gi|307595977|ref|YP_003902294.1| - 5.2e-72 242.6 0.9 5.9e-72 242.4 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Lactamase_B_3 PF13483.1 gi|307595977|ref|YP_003902294.1| - 0.0026 17.4 0.0 0.0059 16.3 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Oxidored_nitro PF00148.14 gi|307595977|ref|YP_003902294.1| - 0.02 13.5 0.2 0.47 9.0 0.0 2.1 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase AhpC-TSA PF00578.16 gi|307595981|ref|YP_003902298.1| - 1.6e-35 121.5 0.0 1.9e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|307595981|ref|YP_003902298.1| - 3.5e-21 75.2 0.0 4.2e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|307595981|ref|YP_003902298.1| - 0.035 13.5 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|307595981|ref|YP_003902298.1| - 0.078 12.8 0.0 1.6 8.6 0.0 2.2 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Oxidored_molyb PF00174.14 gi|307595982|ref|YP_003902299.1| - 5.3e-45 152.8 0.0 7.6e-45 152.3 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TAT_signal PF10518.4 gi|307595982|ref|YP_003902299.1| - 0.039 13.9 4.3 0.067 13.2 3.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Spo0A_C PF08769.6 gi|307595982|ref|YP_003902299.1| - 0.04 13.7 0.0 0.089 12.6 0.0 1.6 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal DUF3670 PF12419.3 gi|307595982|ref|YP_003902299.1| - 0.12 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 SNF2 Helicase protein Ni_hydr_CYTB PF01292.15 gi|307595983|ref|YP_003902300.1| - 0.00076 18.9 5.2 0.00076 18.9 3.6 1.5 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 Rcd1 PF04078.8 gi|307595984|ref|YP_003902301.1| - 0.11 11.3 0.1 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Cell differentiation family, Rcd1-like UNC45-central PF11701.3 gi|307595985|ref|YP_003902302.1| - 0.077 12.6 0.1 0.092 12.3 0.1 1.2 1 0 0 1 1 1 0 Myosin-binding striated muscle assembly central DUF3384 PF11864.3 gi|307595985|ref|YP_003902302.1| - 0.078 11.4 0.1 0.091 11.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3384) MgtE_N PF03448.12 gi|307595985|ref|YP_003902302.1| - 0.31 11.3 1.7 8.2 6.8 1.2 2.5 1 1 0 1 1 1 0 MgtE intracellular N domain PAPS_reduct PF01507.14 gi|307595986|ref|YP_003902303.1| - 1.5e-40 138.8 0.0 2.1e-40 138.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|307595986|ref|YP_003902303.1| - 1.9e-07 31.3 7.9 3.8e-07 30.3 5.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307595986|ref|YP_003902303.1| - 8.5e-07 28.3 10.0 1.6e-05 24.2 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307595986|ref|YP_003902303.1| - 3.1e-06 26.9 22.0 0.00026 20.7 8.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307595986|ref|YP_003902303.1| - 0.00016 22.3 7.1 0.032 14.9 0.3 3.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|307595986|ref|YP_003902303.1| - 0.00021 21.0 2.1 0.00021 21.0 1.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307595986|ref|YP_003902303.1| - 0.00023 20.9 11.0 0.026 14.3 1.8 2.3 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307595986|ref|YP_003902303.1| - 0.00057 20.0 8.0 0.0055 16.9 6.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307595986|ref|YP_003902303.1| - 0.0011 18.7 0.8 0.0011 18.7 0.6 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|307595986|ref|YP_003902303.1| - 0.0057 16.9 8.4 0.19 12.0 1.4 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307595986|ref|YP_003902303.1| - 0.0059 17.0 11.1 0.12 12.7 1.4 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|307595986|ref|YP_003902303.1| - 0.045 13.7 11.9 0.18 11.8 1.9 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF4483 PF14825.1 gi|307595986|ref|YP_003902303.1| - 0.24 11.0 0.0 0.37 10.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4483) Fer4_4 PF12800.2 gi|307595986|ref|YP_003902303.1| - 0.88 10.0 12.5 0.64 10.5 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|307595986|ref|YP_003902303.1| - 2.8 8.3 13.0 0.09 13.1 1.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|307595986|ref|YP_003902303.1| - 6.7 7.5 21.9 0.68 10.6 2.4 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain PG_binding_1 PF01471.13 gi|307595989|ref|YP_003902306.1| - 0.014 15.4 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain Alpha_E2_glycop PF00943.14 gi|307595990|ref|YP_003902307.1| - 0.54 8.8 2.6 0.72 8.4 1.8 1.1 1 0 0 1 1 1 0 Alphavirus E2 glycoprotein HTH_Tnp_Tc5 PF03221.11 gi|307595991|ref|YP_003902308.1| - 0.024 14.4 0.0 0.17 11.6 0.0 2.1 2 1 0 2 2 2 0 Tc5 transposase DNA-binding domain DUF2379 PF09543.5 gi|307595992|ref|YP_003902309.1| - 0.024 14.5 2.0 0.065 13.1 0.6 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2379) Aminotran_5 PF00266.14 gi|307595993|ref|YP_003902310.1| - 7.3e-37 126.9 0.0 1.2e-36 126.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|307595993|ref|YP_003902310.1| - 5.2e-10 38.8 0.0 4.8e-08 32.3 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|307595993|ref|YP_003902310.1| - 1.9e-06 27.1 0.0 3.3e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|307595993|ref|YP_003902310.1| - 0.00047 18.5 0.0 0.00075 17.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme QueC PF06508.8 gi|307595994|ref|YP_003902311.1| - 1.2e-46 158.6 0.0 1.4e-46 158.4 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|307595994|ref|YP_003902311.1| - 2.7e-14 53.0 0.0 7.8e-12 45.0 0.0 2.3 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|307595994|ref|YP_003902311.1| - 3.6e-08 33.2 0.0 5.1e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|307595994|ref|YP_003902311.1| - 7.8e-06 24.6 0.0 1.7e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|307595994|ref|YP_003902311.1| - 0.00011 21.2 0.0 0.012 14.5 0.0 2.1 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.15 gi|307595994|ref|YP_003902311.1| - 0.0006 19.3 0.0 0.0013 18.3 0.0 1.6 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.14 gi|307595994|ref|YP_003902311.1| - 0.0022 17.0 0.0 0.0033 16.5 0.0 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase Mu-like_Com PF10122.4 gi|307595994|ref|YP_003902311.1| - 0.0098 14.9 0.0 0.022 13.7 0.0 1.5 1 0 0 1 1 1 1 Mu-like prophage protein Com ATP_bind_4 PF01902.12 gi|307595994|ref|YP_003902311.1| - 0.13 11.6 0.0 0.32 10.3 0.0 1.7 2 0 0 2 2 2 0 ATP-binding region MmgE_PrpD PF03972.9 gi|307595995|ref|YP_003902312.1| - 3e-130 434.3 0.0 3.6e-130 434.1 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Topo-VIb_trans PF09239.6 gi|307595996|ref|YP_003902313.1| - 4.3e-62 208.3 0.1 6.8e-62 207.7 0.1 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|307595996|ref|YP_003902313.1| - 4.4e-14 52.1 0.0 1.2e-13 50.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|307595996|ref|YP_003902313.1| - 1.2e-11 44.4 0.0 2.7e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|307595996|ref|YP_003902313.1| - 0.01 14.3 0.0 0.027 13.0 0.0 1.6 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) DUF123 PF01986.11 gi|307595997|ref|YP_003902314.1| - 3e-17 62.5 0.0 3.8e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 IFN-gamma PF00714.12 gi|307595997|ref|YP_003902314.1| - 0.13 12.0 0.0 0.29 10.9 0.0 1.5 2 0 0 2 2 2 0 Interferon gamma TruB_N PF01509.13 gi|307595999|ref|YP_003902316.1| - 1.1e-24 87.2 0.0 4.7e-21 75.5 0.0 3.3 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|307595999|ref|YP_003902316.1| - 9.3e-21 73.3 0.4 1.7e-20 72.4 0.3 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|307595999|ref|YP_003902316.1| - 1.4e-18 66.5 0.1 3.8e-18 65.1 0.1 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF3173 PF11372.3 gi|307595999|ref|YP_003902316.1| - 0.0015 18.0 0.1 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3173) SIR2_2 PF13289.1 gi|307595999|ref|YP_003902316.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 SIR2-like domain Radical_SAM PF04055.16 gi|307596000|ref|YP_003902317.1| - 1.4e-25 90.4 0.0 2.8e-25 89.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|307596000|ref|YP_003902317.1| - 1.8e-09 37.7 0.8 4.5e-09 36.5 0.5 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|307596000|ref|YP_003902317.1| - 1.8e-08 34.5 0.0 3.4e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|307596000|ref|YP_003902317.1| - 5.4e-08 32.8 0.0 9.1e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain FR47 PF08445.5 gi|307596001|ref|YP_003902318.1| - 7.7e-15 54.4 0.0 1.1e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.19 gi|307596001|ref|YP_003902318.1| - 9e-12 44.8 0.0 1.9e-11 43.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|307596001|ref|YP_003902318.1| - 4.3e-06 26.7 0.1 2.4e-05 24.3 0.0 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|307596001|ref|YP_003902318.1| - 6.5e-06 26.2 0.0 1.4e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|307596001|ref|YP_003902318.1| - 0.00077 19.6 0.1 0.0021 18.2 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|307596001|ref|YP_003902318.1| - 0.0013 18.6 0.0 0.0026 17.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|307596001|ref|YP_003902318.1| - 0.0065 16.3 0.0 0.023 14.5 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.5 gi|307596001|ref|YP_003902318.1| - 0.091 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region DJ-1_PfpI PF01965.19 gi|307596002|ref|YP_003902319.1| - 2.5e-36 124.3 0.0 2.9e-36 124.1 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|307596002|ref|YP_003902319.1| - 1.9e-09 37.0 0.0 3.4e-09 36.1 0.0 1.4 1 1 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|307596002|ref|YP_003902319.1| - 0.0016 17.9 0.0 0.002 17.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|307596002|ref|YP_003902319.1| - 0.0017 17.9 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain FAA_hydrolase PF01557.13 gi|307596003|ref|YP_003902320.1| - 2.7e-46 157.7 0.0 3.5e-46 157.3 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Lactamase_B PF00753.22 gi|307596004|ref|YP_003902321.1| - 8.2e-25 87.5 0.1 1.1e-24 87.1 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|307596004|ref|YP_003902321.1| - 0.034 13.6 0.3 0.058 12.9 0.2 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain ABC_tran PF00005.22 gi|307596005|ref|YP_003902322.1| - 1.1e-24 87.2 0.0 1.6e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307596005|ref|YP_003902322.1| - 1.9e-12 47.7 0.0 4.5e-07 30.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|307596005|ref|YP_003902322.1| - 9.5e-05 22.0 0.2 0.00025 20.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|307596005|ref|YP_003902322.1| - 0.00044 19.4 0.0 0.03 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|307596005|ref|YP_003902322.1| - 0.00085 19.0 0.4 0.0024 17.5 0.1 1.9 2 0 0 2 2 1 1 Part of AAA domain AAA_33 PF13671.1 gi|307596005|ref|YP_003902322.1| - 0.0012 18.6 0.9 0.3 10.9 0.1 3.2 2 1 1 3 3 3 1 AAA domain AAA PF00004.24 gi|307596005|ref|YP_003902322.1| - 0.0013 18.8 0.0 0.01 16.0 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307596005|ref|YP_003902322.1| - 0.002 18.2 0.1 0.14 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|307596005|ref|YP_003902322.1| - 0.0025 17.5 0.0 0.0064 16.2 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|307596005|ref|YP_003902322.1| - 0.0029 17.1 0.0 0.0058 16.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|307596005|ref|YP_003902322.1| - 0.0034 17.7 0.0 0.0056 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307596005|ref|YP_003902322.1| - 0.0039 17.1 0.0 0.0082 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|307596005|ref|YP_003902322.1| - 0.0045 16.4 0.3 0.011 15.2 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|307596005|ref|YP_003902322.1| - 0.0055 17.5 0.4 0.014 16.1 0.1 2.1 2 1 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|307596005|ref|YP_003902322.1| - 0.0065 15.7 0.0 0.9 8.7 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|307596005|ref|YP_003902322.1| - 0.007 15.4 1.0 0.1 11.6 0.1 2.4 2 1 0 2 2 2 1 Zeta toxin SRP54 PF00448.17 gi|307596005|ref|YP_003902322.1| - 0.0083 15.5 0.2 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|307596005|ref|YP_003902322.1| - 0.018 14.6 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RecA PF00154.16 gi|307596005|ref|YP_003902322.1| - 0.082 11.9 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein ABC_ATPase PF09818.4 gi|307596005|ref|YP_003902322.1| - 0.1 11.1 0.3 0.43 9.1 0.1 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|307596005|ref|YP_003902322.1| - 0.17 11.2 1.1 0.56 9.5 0.0 2.2 3 0 0 3 3 3 0 AAA-like domain ABC2_membrane PF01061.19 gi|307596006|ref|YP_003902323.1| - 1.5e-13 50.4 27.6 1.5e-13 50.4 19.1 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|307596006|ref|YP_003902323.1| - 2.1e-09 36.9 29.8 2.1e-09 36.9 20.6 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein CbiZ PF01955.13 gi|307596007|ref|YP_003902324.1| - 3.5e-58 196.5 0.2 4.1e-58 196.3 0.2 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Gate PF07670.9 gi|307596008|ref|YP_003902325.1| - 0.00051 19.9 2.8 0.00051 19.9 1.9 3.0 1 1 1 2 2 2 1 Nucleoside recognition CM2 PF03021.9 gi|307596008|ref|YP_003902325.1| - 8.4 5.9 12.9 1.6 8.2 0.1 3.5 3 1 1 4 4 4 0 Influenza C virus M2 protein CobN-Mg_chel PF02514.11 gi|307596009|ref|YP_003902326.1| - 0 1056.9 0.0 0 1056.5 0.0 1.2 1 0 0 1 1 1 1 CobN/Magnesium Chelatase DUF2755 PF10954.3 gi|307596009|ref|YP_003902326.1| - 0.089 12.5 0.0 0.49 10.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2755) VWA_2 PF13519.1 gi|307596010|ref|YP_003902327.1| - 5.6e-15 55.8 0.0 1.1e-14 54.9 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|307596010|ref|YP_003902327.1| - 3.1e-13 49.3 0.5 6.5e-07 28.7 0.0 3.9 4 0 0 4 4 4 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|307596010|ref|YP_003902327.1| - 4.6e-10 39.3 0.3 7.9e-05 22.4 0.0 2.6 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|307596010|ref|YP_003902327.1| - 8.1e-06 24.8 1.3 0.0012 17.7 0.3 3.3 2 1 0 2 2 2 1 MCM2/3/5 family AAA_16 PF13191.1 gi|307596010|ref|YP_003902327.1| - 1e-05 25.5 0.1 6.6e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain VWA PF00092.23 gi|307596010|ref|YP_003902327.1| - 0.00042 20.0 0.0 0.00077 19.2 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|307596010|ref|YP_003902327.1| - 0.00098 18.3 0.1 0.0035 16.5 0.1 1.9 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein Sigma54_activat PF00158.21 gi|307596010|ref|YP_003902327.1| - 0.0048 16.3 0.0 2.4 7.6 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.1 gi|307596010|ref|YP_003902327.1| - 0.0052 16.9 0.0 0.027 14.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|307596010|ref|YP_003902327.1| - 0.011 16.5 0.2 0.27 12.0 0.2 2.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|307596010|ref|YP_003902327.1| - 0.011 15.9 0.0 0.096 12.8 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|307596010|ref|YP_003902327.1| - 0.014 15.0 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|307596010|ref|YP_003902327.1| - 0.015 14.9 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase_2 PF13335.1 gi|307596010|ref|YP_003902327.1| - 0.026 14.9 0.6 0.053 13.9 0.4 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|307596010|ref|YP_003902327.1| - 0.028 14.1 0.4 0.17 11.6 0.0 2.5 3 0 0 3 3 3 0 Part of AAA domain DUF815 PF05673.8 gi|307596010|ref|YP_003902327.1| - 0.13 11.1 0.0 0.42 9.4 0.0 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF815) Miro PF08477.8 gi|307596010|ref|YP_003902327.1| - 0.15 12.5 0.0 0.52 10.8 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein ABC_tran PF00005.22 gi|307596011|ref|YP_003902328.1| - 1e-27 97.0 0.0 1.4e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307596011|ref|YP_003902328.1| - 9.1e-09 35.6 0.0 1.8e-05 24.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|307596011|ref|YP_003902328.1| - 2.3e-06 27.0 0.5 0.00016 20.9 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|307596011|ref|YP_003902328.1| - 6.9e-05 23.2 0.0 0.00011 22.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|307596011|ref|YP_003902328.1| - 0.00034 20.4 0.0 0.009 15.9 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|307596011|ref|YP_003902328.1| - 0.00043 19.7 0.0 0.00086 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|307596011|ref|YP_003902328.1| - 0.00063 18.9 0.0 0.3 10.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|307596011|ref|YP_003902328.1| - 0.0014 18.7 0.0 0.0031 17.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307596011|ref|YP_003902328.1| - 0.0018 18.4 0.3 0.017 15.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|307596011|ref|YP_003902328.1| - 0.0018 17.4 0.0 0.0029 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|307596011|ref|YP_003902328.1| - 0.003 17.5 0.0 0.011 15.7 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|307596011|ref|YP_003902328.1| - 0.004 16.5 0.1 0.64 9.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|307596011|ref|YP_003902328.1| - 0.0057 15.7 0.0 0.009 15.1 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_10 PF12846.2 gi|307596011|ref|YP_003902328.1| - 0.0058 16.1 0.1 0.11 11.8 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain MutS_V PF00488.16 gi|307596011|ref|YP_003902328.1| - 0.013 14.8 0.0 0.029 13.7 0.0 1.5 1 0 0 1 1 1 0 MutS domain V AAA_33 PF13671.1 gi|307596011|ref|YP_003902328.1| - 0.015 15.1 0.0 0.02 14.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|307596011|ref|YP_003902328.1| - 0.026 14.1 0.1 0.058 13.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MMR_HSR1 PF01926.18 gi|307596011|ref|YP_003902328.1| - 0.032 14.1 0.1 0.088 12.7 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.9 gi|307596011|ref|YP_003902328.1| - 0.11 12.2 0.1 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B FecCD PF01032.13 gi|307596012|ref|YP_003902329.1| - 8.4e-80 267.8 36.2 1e-79 267.6 25.1 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|307596013|ref|YP_003902330.1| - 3.6e-17 62.2 0.0 6.4e-17 61.4 0.0 1.4 2 0 0 2 2 2 1 Periplasmic binding protein ODV-E18 PF10717.4 gi|307596013|ref|YP_003902330.1| - 0.049 13.0 0.7 8 5.9 0.0 2.5 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 Sigma_reg_N PF13800.1 gi|307596013|ref|YP_003902330.1| - 0.068 13.2 1.5 0.15 12.0 1.0 1.6 1 0 0 1 1 1 0 Sigma factor regulator N-terminal TP_methylase PF00590.15 gi|307596015|ref|YP_003902332.1| - 3.1e-49 167.5 3.0 3.9e-49 167.2 2.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases SecD_SecF PF02355.11 gi|307596015|ref|YP_003902332.1| - 0.098 11.8 0.5 0.3 10.2 0.3 1.8 1 1 0 1 1 1 0 Protein export membrane protein TP_methylase PF00590.15 gi|307596016|ref|YP_003902333.1| - 4.4e-32 111.4 0.0 5e-32 111.3 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_18 PF12847.2 gi|307596017|ref|YP_003902334.1| - 8.8e-18 64.9 0.1 1.3e-17 64.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|307596017|ref|YP_003902334.1| - 1.2e-09 38.2 0.1 2e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307596017|ref|YP_003902334.1| - 1.9e-09 37.2 0.0 4.1e-09 36.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|307596017|ref|YP_003902334.1| - 5.8e-09 35.5 0.1 1.1e-08 34.5 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.13 gi|307596017|ref|YP_003902334.1| - 7e-08 32.2 0.0 1e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|307596017|ref|YP_003902334.1| - 1.6e-07 31.1 0.4 2.3e-07 30.5 0.2 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|307596017|ref|YP_003902334.1| - 2e-07 30.4 0.1 2.7e-07 30.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_3 PF01596.12 gi|307596017|ref|YP_003902334.1| - 5.3e-07 28.8 0.0 7.8e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_15 PF09445.5 gi|307596017|ref|YP_003902334.1| - 9.7e-07 28.4 0.0 1.4e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.1 gi|307596017|ref|YP_003902334.1| - 3.5e-06 27.7 0.0 5.1e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|307596017|ref|YP_003902334.1| - 8.5e-06 25.2 0.0 1.2e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|307596017|ref|YP_003902334.1| - 1e-05 24.7 0.0 1.4e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Met_10 PF02475.11 gi|307596017|ref|YP_003902334.1| - 3.3e-05 23.5 0.0 4.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein DOT1 PF08123.8 gi|307596017|ref|YP_003902334.1| - 4.8e-05 22.7 0.0 7.4e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_25 PF13649.1 gi|307596017|ref|YP_003902334.1| - 9.8e-05 22.6 0.0 0.00016 22.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|307596017|ref|YP_003902334.1| - 0.00024 20.7 0.0 0.00035 20.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.7 gi|307596017|ref|YP_003902334.1| - 0.0011 19.4 0.0 0.002 18.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|307596017|ref|YP_003902334.1| - 0.0014 18.3 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|307596017|ref|YP_003902334.1| - 0.003 16.6 0.0 0.0057 15.7 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|307596017|ref|YP_003902334.1| - 0.011 14.8 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_16 PF10294.4 gi|307596017|ref|YP_003902334.1| - 0.021 14.2 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase GidB PF02527.10 gi|307596017|ref|YP_003902334.1| - 0.046 12.8 0.1 0.058 12.5 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_32 PF13679.1 gi|307596017|ref|YP_003902334.1| - 0.058 13.0 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307596017|ref|YP_003902334.1| - 0.058 13.8 0.0 0.089 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Nol1_Nop2_Fmu PF01189.12 gi|307596017|ref|YP_003902334.1| - 0.065 12.6 0.0 0.088 12.1 0.0 1.1 1 0 0 1 1 1 0 NOL1/NOP2/sun family Methyltransf_4 PF02390.12 gi|307596017|ref|YP_003902334.1| - 0.14 11.2 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase CbiD PF01888.12 gi|307596018|ref|YP_003902335.1| - 4.7e-62 209.3 6.6 6e-62 208.9 4.6 1.1 1 0 0 1 1 1 1 CbiD TP_methylase PF00590.15 gi|307596019|ref|YP_003902336.1| - 4.3e-36 124.6 0.1 4.9e-36 124.4 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Phage_holin_2 PF04550.7 gi|307596019|ref|YP_003902336.1| - 0.031 14.3 0.2 9.9 6.3 0.0 2.7 2 0 0 2 2 2 0 Phage holin family 2 CbiC PF02570.10 gi|307596020|ref|YP_003902337.1| - 3e-44 150.8 0.6 3.8e-44 150.4 0.4 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiX PF01903.12 gi|307596020|ref|YP_003902337.1| - 2.9e-13 49.8 0.0 1.6e-12 47.4 0.0 2.1 2 0 0 2 2 2 1 CbiX GH-E PF14410.1 gi|307596020|ref|YP_003902337.1| - 0.028 14.5 0.7 0.15 12.1 0.0 2.3 3 0 0 3 3 3 0 HNH/ENDO VII superfamily nuclease with conserved GHE residues UPF0546 PF10639.4 gi|307596020|ref|YP_003902337.1| - 0.038 13.8 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0546 TP_methylase PF00590.15 gi|307596021|ref|YP_003902338.1| - 2.6e-36 125.2 0.0 3e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|307596022|ref|YP_003902339.1| - 2.9e-27 94.1 0.2 7.8e-27 92.8 0.1 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|307596022|ref|YP_003902339.1| - 3e-19 69.4 2.4 6.2e-19 68.4 0.3 2.2 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus ClpS PF02617.12 gi|307596025|ref|YP_003902342.1| - 0.0081 15.8 0.0 0.022 14.4 0.0 1.7 1 0 0 1 1 1 1 ATP-dependent Clp protease adaptor protein ClpS HAD PF12710.2 gi|307596025|ref|YP_003902342.1| - 0.067 13.3 0.1 0.14 12.2 0.0 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Uds1 PF15456.1 gi|307596025|ref|YP_003902342.1| - 0.1 12.5 0.6 0.55 10.2 0.1 2.2 2 0 0 2 2 2 0 Up-regulated During Septation MFS_1 PF07690.11 gi|307596026|ref|YP_003902343.1| - 3.4e-07 29.3 15.0 4e-07 29.0 10.4 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|307596026|ref|YP_003902343.1| - 0.00044 19.9 1.0 0.00083 19.0 0.5 1.6 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.19 gi|307596026|ref|YP_003902343.1| - 0.0036 15.9 8.8 0.033 12.7 6.0 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter DUF3169 PF11368.3 gi|307596026|ref|YP_003902343.1| - 0.041 13.0 2.1 0.051 12.7 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) adh_short_C2 PF13561.1 gi|307596027|ref|YP_003902344.1| - 2.5e-33 115.8 0.0 3.2e-33 115.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|307596027|ref|YP_003902344.1| - 1.2e-31 109.9 0.2 1.5e-31 109.5 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|307596027|ref|YP_003902344.1| - 9.8e-18 64.4 0.1 1.4e-17 63.9 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|307596027|ref|YP_003902344.1| - 3.9e-05 23.2 0.1 0.00021 20.8 0.0 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|307596027|ref|YP_003902344.1| - 0.0026 17.4 0.1 0.0057 16.4 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|307596027|ref|YP_003902344.1| - 0.0044 16.3 0.1 0.0066 15.7 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|307596027|ref|YP_003902344.1| - 0.036 13.2 0.1 0.15 11.1 0.1 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.10 gi|307596027|ref|YP_003902344.1| - 0.045 12.6 0.1 0.079 11.8 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|307596027|ref|YP_003902344.1| - 0.05 13.6 0.2 0.089 12.7 0.1 1.5 1 0 0 1 1 1 0 NADH(P)-binding NTP_transf_5 PF14907.1 gi|307596028|ref|YP_003902345.1| - 0.0015 17.9 0.1 0.67 9.2 0.0 2.4 3 0 0 3 3 3 2 Uncharacterised nucleotidyltransferase NTP_transf_2 PF01909.18 gi|307596028|ref|YP_003902345.1| - 0.028 14.7 0.3 0.056 13.7 0.2 1.7 1 0 0 1 1 1 0 Nucleotidyltransferase domain DUF1540 PF07561.6 gi|307596028|ref|YP_003902345.1| - 0.05 13.6 0.7 9.9 6.2 0.1 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1540) DUF2204 PF09970.4 gi|307596028|ref|YP_003902345.1| - 0.05 13.0 0.3 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) PEP_mutase PF13714.1 gi|307596029|ref|YP_003902346.1| - 1.1e-63 214.6 0.2 1.3e-63 214.4 0.1 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|307596029|ref|YP_003902346.1| - 1.1e-16 60.1 1.0 4.9e-16 58.0 0.4 2.1 1 1 1 2 2 2 1 Isocitrate lyase family ComA PF02679.10 gi|307596029|ref|YP_003902346.1| - 0.084 11.8 0.1 1.4 7.8 0.0 2.6 2 1 1 3 3 3 0 (2R)-phospho-3-sulfolactate synthase (ComA) ECH PF00378.15 gi|307596030|ref|YP_003902347.1| - 2.5e-66 223.2 0.0 3.7e-66 222.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|307596030|ref|YP_003902347.1| - 3e-66 222.5 0.1 4.1e-66 222.0 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|307596030|ref|YP_003902347.1| - 2.2e-50 169.0 0.0 5.7e-26 90.7 0.0 2.8 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|307596030|ref|YP_003902347.1| - 8.4e-08 32.0 0.0 1.7e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|307596030|ref|YP_003902347.1| - 2.6e-06 27.3 0.0 5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|307596030|ref|YP_003902347.1| - 0.00052 20.3 0.0 0.0018 18.6 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|307596030|ref|YP_003902347.1| - 0.0016 18.8 0.1 0.007 16.7 0.1 2.2 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|307596030|ref|YP_003902347.1| - 0.0058 16.0 0.0 0.018 14.4 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ECH_C PF13766.1 gi|307596030|ref|YP_003902347.1| - 0.006 16.7 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region Peptidase_S49 PF01343.13 gi|307596030|ref|YP_003902347.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S49 AlaDh_PNT_C PF01262.16 gi|307596030|ref|YP_003902347.1| - 0.043 13.3 0.5 0.092 12.3 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|307596030|ref|YP_003902347.1| - 0.051 12.7 0.1 0.12 11.4 0.1 1.7 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|307596030|ref|YP_003902347.1| - 0.057 13.2 1.3 0.17 11.7 0.9 1.9 1 1 0 1 1 1 0 ThiF family NAD_binding_7 PF13241.1 gi|307596030|ref|YP_003902347.1| - 0.059 13.6 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding SDH_sah PF01972.11 gi|307596030|ref|YP_003902347.1| - 0.11 11.2 0.3 0.52 9.0 0.0 2.1 2 1 0 2 2 2 0 Serine dehydrogenase proteinase BPD_transp_1 PF00528.17 gi|307596031|ref|YP_003902348.1| - 6.2e-11 42.1 17.9 6.2e-11 42.1 12.4 2.6 1 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|307596032|ref|YP_003902349.1| - 5e-20 72.1 0.0 6.4e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TYW3 PF02676.9 gi|307596033|ref|YP_003902350.1| - 3.5e-42 143.8 0.0 4.1e-42 143.6 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 ABC_tran PF00005.22 gi|307596034|ref|YP_003902351.1| - 5.8e-29 101.1 0.0 8.4e-29 100.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307596034|ref|YP_003902351.1| - 5.9e-11 42.8 0.0 2.8e-06 27.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|307596034|ref|YP_003902351.1| - 0.0023 17.6 1.3 0.0031 17.2 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA PF00004.24 gi|307596034|ref|YP_003902351.1| - 0.0037 17.4 0.2 0.74 10.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|307596034|ref|YP_003902351.1| - 0.0077 16.0 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_23 PF13476.1 gi|307596034|ref|YP_003902351.1| - 0.0078 16.5 0.1 0.018 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|307596034|ref|YP_003902351.1| - 0.0096 16.0 0.1 0.064 13.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|307596034|ref|YP_003902351.1| - 0.028 14.1 0.0 0.072 12.7 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|307596034|ref|YP_003902351.1| - 0.029 13.6 0.1 0.56 9.3 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|307596034|ref|YP_003902351.1| - 0.039 13.9 0.1 0.1 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|307596034|ref|YP_003902351.1| - 0.049 13.0 0.1 0.064 12.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|307596034|ref|YP_003902351.1| - 0.052 13.1 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|307596034|ref|YP_003902351.1| - 0.078 12.7 0.1 0.58 9.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF87 T2SE PF00437.15 gi|307596034|ref|YP_003902351.1| - 0.078 11.8 0.0 0.14 10.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein PhoH PF02562.11 gi|307596034|ref|YP_003902351.1| - 0.12 11.6 0.0 0.19 10.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein DEAD PF00270.24 gi|307596034|ref|YP_003902351.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase BPD_transp_1 PF00528.17 gi|307596035|ref|YP_003902352.1| - 2e-24 86.1 46.1 4.3e-14 52.4 10.6 3.4 3 0 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component Pyr_redox PF00070.22 gi|307596035|ref|YP_003902352.1| - 0.27 11.6 1.3 5.1 7.5 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase YukC PF10140.4 gi|307596035|ref|YP_003902352.1| - 2.4 6.6 4.4 0.78 8.2 0.5 1.9 2 0 0 2 2 2 0 WXG100 protein secretion system (Wss), protein YukC Ribosomal_L14 PF00238.14 gi|307596037|ref|YP_003902354.1| - 4.1e-34 116.9 0.0 4.8e-34 116.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.6 gi|307596037|ref|YP_003902354.1| - 0.0053 16.8 0.1 0.017 15.1 0.0 1.8 2 0 0 2 2 2 1 PAS fold tRNA-synt_2b PF00587.20 gi|307596038|ref|YP_003902355.1| - 5.4e-47 159.5 0.0 8.2e-47 158.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|307596038|ref|YP_003902355.1| - 9.8e-21 73.5 0.3 1.9e-20 72.5 0.2 1.5 1 0 0 1 1 1 1 Anticodon binding domain zf-C2HC_2 PF13913.1 gi|307596038|ref|YP_003902355.1| - 0.01 15.5 3.1 0.021 14.4 0.0 2.6 3 0 0 3 3 3 1 zinc-finger of a C2HC-type Rad50_zn_hook PF04423.9 gi|307596038|ref|YP_003902355.1| - 0.24 10.8 0.7 0.6 9.6 0.0 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.11 gi|307596038|ref|YP_003902355.1| - 0.39 10.4 1.6 3 7.6 0.2 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.21 gi|307596038|ref|YP_003902355.1| - 0.59 10.6 1.9 8.5 6.9 0.1 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type Arginase PF00491.16 gi|307596039|ref|YP_003902356.1| - 1.8e-54 184.8 0.0 2.2e-54 184.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family POR PF01558.13 gi|307596041|ref|YP_003902358.1| - 3.9e-36 124.5 0.0 4.6e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|307596042|ref|YP_003902359.1| - 7.7e-15 53.7 16.2 2.3e-08 33.2 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307596042|ref|YP_003902359.1| - 9.4e-12 44.6 7.2 1.3e-11 44.1 5.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307596042|ref|YP_003902359.1| - 1e-10 40.8 14.1 1.6e-05 24.5 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307596042|ref|YP_003902359.1| - 4.9e-10 39.0 9.6 5.1e-05 22.9 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307596042|ref|YP_003902359.1| - 2.5e-09 36.5 16.4 6.1e-05 22.7 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|307596042|ref|YP_003902359.1| - 1.1e-08 35.2 8.9 2.7e-08 34.0 6.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307596042|ref|YP_003902359.1| - 1.2e-08 35.5 9.1 0.0004 21.0 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|307596042|ref|YP_003902359.1| - 1.4e-07 31.3 7.0 2e-07 30.9 4.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307596042|ref|YP_003902359.1| - 5e-07 29.8 9.1 8.2e-07 29.1 6.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307596042|ref|YP_003902359.1| - 1.3e-06 28.8 9.9 0.0035 17.8 0.2 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|307596042|ref|YP_003902359.1| - 0.0002 21.7 5.0 0.1 13.0 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307596042|ref|YP_003902359.1| - 0.00039 20.5 11.2 0.012 15.8 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|307596042|ref|YP_003902359.1| - 0.00059 20.1 15.6 0.0062 16.8 2.3 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|307596042|ref|YP_003902359.1| - 0.00071 19.8 11.5 0.024 15.0 8.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|307596042|ref|YP_003902359.1| - 2.2 9.0 16.1 0.26 11.9 4.7 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|307596043|ref|YP_003902360.1| - 9.2e-74 247.8 1.6 1.2e-73 247.4 1.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|307596043|ref|YP_003902360.1| - 0.00011 22.1 0.2 0.00035 20.5 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|307596044|ref|YP_003902361.1| - 1.6e-24 86.1 0.1 4.1e-24 84.8 0.0 1.7 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FlgD_ig PF13860.1 gi|307596046|ref|YP_003902363.1| - 0.0012 18.5 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 FlgD Ig-like domain LTD PF00932.14 gi|307596046|ref|YP_003902363.1| - 0.016 15.2 0.0 0.023 14.7 0.0 1.3 1 1 0 1 1 1 0 Lamin Tail Domain DUF3324 PF11797.3 gi|307596046|ref|YP_003902363.1| - 0.062 13.0 0.0 0.068 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function C-terminal (DUF3324) NMN_transporter PF04973.7 gi|307596047|ref|YP_003902364.1| - 0.0063 16.0 2.2 0.0063 16.0 1.5 2.1 2 0 0 2 2 2 1 Nicotinamide mononucleotide transporter DUF1469 PF07332.6 gi|307596047|ref|YP_003902364.1| - 0.71 9.6 4.9 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF3930 PF13067.1 gi|307596047|ref|YP_003902364.1| - 0.99 9.3 5.2 0.24 11.2 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3930) CAAD PF14159.1 gi|307596047|ref|YP_003902364.1| - 6.1 6.5 7.7 0.59 9.8 1.6 2.0 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase MerC PF03203.9 gi|307596047|ref|YP_003902364.1| - 7.1 7.0 12.7 0.2 12.0 3.7 1.9 2 0 0 2 2 2 0 MerC mercury resistance protein DUF4191 PF13829.1 gi|307596047|ref|YP_003902364.1| - 8.6 5.3 8.7 9.3 5.2 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF58 PF01882.13 gi|307596048|ref|YP_003902365.1| - 6.3e-24 83.9 0.0 1.1e-23 83.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 NADH_oxidored PF08040.6 gi|307596048|ref|YP_003902365.1| - 0.033 13.7 0.0 0.11 12.1 0.0 1.9 1 0 0 1 1 1 0 MNLL subunit DUF2651 PF10852.3 gi|307596048|ref|YP_003902365.1| - 4.2 7.7 8.3 2.6 8.4 4.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2651) AAA_3 PF07726.6 gi|307596049|ref|YP_003902366.1| - 6.5e-64 213.4 0.0 1.1e-63 212.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|307596049|ref|YP_003902366.1| - 6e-12 45.4 0.0 1.2e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|307596049|ref|YP_003902366.1| - 0.00013 21.4 0.0 0.0014 18.1 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|307596049|ref|YP_003902366.1| - 0.00022 20.4 0.1 0.22 10.6 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|307596049|ref|YP_003902366.1| - 0.00069 19.8 0.0 0.0042 17.2 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|307596049|ref|YP_003902366.1| - 0.0016 17.2 0.0 0.033 12.9 0.0 2.4 2 1 0 2 2 2 1 MCM2/3/5 family AAA_17 PF13207.1 gi|307596049|ref|YP_003902366.1| - 0.0051 17.6 0.0 0.015 16.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|307596049|ref|YP_003902366.1| - 0.0055 16.6 0.0 0.39 10.5 0.0 3.0 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|307596049|ref|YP_003902366.1| - 0.006 15.6 0.1 0.068 12.2 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus SKI PF01202.17 gi|307596049|ref|YP_003902366.1| - 0.16 11.8 0.1 0.31 10.8 0.1 1.5 1 0 0 1 1 1 0 Shikimate kinase DUF4129 PF13559.1 gi|307596051|ref|YP_003902368.1| - 0.00024 21.0 0.0 0.00038 20.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) FtsX PF02687.16 gi|307596051|ref|YP_003902368.1| - 0.018 14.8 4.6 0.55 9.9 0.2 2.2 2 0 0 2 2 2 0 FtsX-like permease family Corona_NS3b PF03053.9 gi|307596051|ref|YP_003902368.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 ORF3b coronavirus protein DUF1628 PF07790.6 gi|307596051|ref|YP_003902368.1| - 0.5 11.1 4.7 0.42 11.4 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) DUF4083 PF13314.1 gi|307596051|ref|YP_003902368.1| - 5.9 6.8 10.8 3.2 7.6 3.4 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4083) DUF973 PF06157.6 gi|307596052|ref|YP_003902369.1| - 1.4e-07 30.8 26.5 2.2e-07 30.1 18.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF4341 PF14241.1 gi|307596052|ref|YP_003902369.1| - 0.034 13.8 0.7 0.034 13.8 0.5 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4341) HCV_core PF01542.13 gi|307596052|ref|YP_003902369.1| - 0.094 13.1 1.3 7.8 6.9 0.1 2.8 2 0 0 2 2 2 0 Hepatitis C virus core protein Lysis_S PF04971.7 gi|307596052|ref|YP_003902369.1| - 0.38 10.4 6.8 0.42 10.3 1.3 2.6 2 0 0 2 2 2 0 Lysis protein S Lactamase_B PF00753.22 gi|307596053|ref|YP_003902370.1| - 4.8e-10 39.4 0.2 7.4e-10 38.7 0.1 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|307596053|ref|YP_003902370.1| - 0.0024 17.4 0.0 0.0027 17.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.23 gi|307596054|ref|YP_003902371.1| - 5.3e-81 272.1 0.0 6.5e-81 271.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|307596054|ref|YP_003902371.1| - 5.3e-18 65.7 0.0 1.2e-17 64.6 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Exo_endo_phos PF03372.18 gi|307596055|ref|YP_003902372.1| - 6.6e-21 75.3 0.0 7.8e-21 75.1 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|307596055|ref|YP_003902372.1| - 3.1e-14 52.6 0.0 4e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase Sulf_transp PF04143.9 gi|307596057|ref|YP_003902374.1| - 1e-14 54.2 20.6 1e-09 38.2 3.9 5.0 5 0 0 5 5 5 2 Sulphur transport Ribosomal_S6e PF01092.14 gi|307596058|ref|YP_003902375.1| - 2.7e-27 94.9 0.2 3.6e-27 94.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e Cren7 PF11520.3 gi|307596059|ref|YP_003902376.1| - 2e-19 68.9 3.1 2.3e-19 68.7 2.2 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 AceK PF06315.6 gi|307596059|ref|YP_003902376.1| - 0.086 11.1 0.0 0.086 11.1 0.0 1.0 1 0 0 1 1 1 0 Isocitrate dehydrogenase kinase/phosphatase (AceK) UDG PF03167.14 gi|307596060|ref|YP_003902377.1| - 7.1e-44 148.9 0.0 9.4e-44 148.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Glyco_tranf_2_3 PF13641.1 gi|307596061|ref|YP_003902378.1| - 1.7e-21 77.0 0.0 2.4e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|307596061|ref|YP_003902378.1| - 2.1e-18 66.7 3.4 2.1e-18 66.7 2.3 1.6 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|307596061|ref|YP_003902378.1| - 1.3e-12 47.7 0.0 1.9e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|307596061|ref|YP_003902378.1| - 4.7e-08 32.5 0.0 7.1e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Pribosyltran PF00156.22 gi|307596062|ref|YP_003902379.1| - 2.3e-17 62.8 0.1 3.9e-17 62.1 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_31 PF13560.1 gi|307596062|ref|YP_003902379.1| - 0.0001 22.4 0.0 0.0086 16.2 0.0 2.6 2 1 1 3 3 3 1 Helix-turn-helix domain UPRTase PF14681.1 gi|307596062|ref|YP_003902379.1| - 0.00022 20.4 0.0 0.0004 19.6 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_3 PF01381.17 gi|307596062|ref|YP_003902379.1| - 0.047 13.5 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix PRTase_2 PF15609.1 gi|307596062|ref|YP_003902379.1| - 0.06 12.6 0.0 0.095 11.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Resolvase PF00239.16 gi|307596062|ref|YP_003902379.1| - 0.13 12.1 0.2 0.28 11.0 0.2 1.7 1 1 0 1 1 1 0 Resolvase, N terminal domain bZIP_1 PF00170.16 gi|307596063|ref|YP_003902380.1| - 1e-05 25.4 9.0 3e-05 23.9 6.1 1.9 1 1 0 1 1 1 1 bZIP transcription factor DUF972 PF06156.8 gi|307596063|ref|YP_003902380.1| - 8.4e-05 22.8 4.2 0.00019 21.7 2.9 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF972) HALZ PF02183.13 gi|307596063|ref|YP_003902380.1| - 0.00013 21.6 10.2 0.0071 16.0 2.4 2.6 2 1 1 3 3 2 2 Homeobox associated leucine zipper EMP24_GP25L PF01105.19 gi|307596063|ref|YP_003902380.1| - 0.00017 21.3 0.3 0.00023 20.9 0.2 1.2 1 0 0 1 1 1 1 emp24/gp25L/p24 family/GOLD Cep57_CLD_2 PF14197.1 gi|307596063|ref|YP_003902380.1| - 0.00022 21.0 7.8 0.00047 20.0 5.4 1.5 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 FlaC_arch PF05377.6 gi|307596063|ref|YP_003902380.1| - 0.00026 20.8 4.9 0.00066 19.5 3.4 1.7 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) HOOK PF05622.7 gi|307596063|ref|YP_003902380.1| - 0.0003 18.7 1.7 0.00041 18.3 1.2 1.1 1 0 0 1 1 1 1 HOOK protein DUF4140 PF13600.1 gi|307596063|ref|YP_003902380.1| - 0.00063 20.1 1.9 0.0012 19.2 1.3 1.5 1 0 0 1 1 1 1 N-terminal domain of unknown function (DUF4140) BLOC1_2 PF10046.4 gi|307596063|ref|YP_003902380.1| - 0.00083 19.4 0.8 0.0019 18.3 0.1 1.8 2 0 0 2 2 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|307596063|ref|YP_003902380.1| - 0.0011 18.5 1.9 0.0018 17.9 1.3 1.2 1 0 0 1 1 1 1 IncA protein bZIP_2 PF07716.10 gi|307596063|ref|YP_003902380.1| - 0.0012 18.6 8.7 0.0062 16.3 5.6 2.3 1 1 1 2 2 2 1 Basic region leucine zipper DUF2205 PF10224.4 gi|307596063|ref|YP_003902380.1| - 0.0014 18.1 3.2 0.0031 17.0 2.2 1.5 1 0 0 1 1 1 1 Predicted coiled-coil protein (DUF2205) DUF1875 PF08961.5 gi|307596063|ref|YP_003902380.1| - 0.002 17.5 0.8 0.0026 17.1 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1875) ATG16 PF08614.6 gi|307596063|ref|YP_003902380.1| - 0.003 17.3 0.7 0.0043 16.9 0.5 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Taxilin PF09728.4 gi|307596063|ref|YP_003902380.1| - 0.0036 16.4 1.1 0.0036 16.4 0.7 1.9 2 0 0 2 2 2 1 Myosin-like coiled-coil protein DUF3186 PF11382.3 gi|307596063|ref|YP_003902380.1| - 0.0045 16.1 0.3 0.0066 15.6 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3186) Nup54 PF13874.1 gi|307596063|ref|YP_003902380.1| - 0.0073 15.9 1.0 0.013 15.1 0.7 1.4 1 0 0 1 1 1 1 Nucleoporin complex subunit 54 Hemerythrin PF01814.18 gi|307596063|ref|YP_003902380.1| - 0.0095 16.0 0.8 0.02 15.0 0.3 1.7 2 0 0 2 2 1 1 Hemerythrin HHE cation binding domain DivIC PF04977.10 gi|307596063|ref|YP_003902380.1| - 0.0098 15.3 9.6 0.05 13.0 3.8 2.6 1 1 1 2 2 2 2 Septum formation initiator CALCOCO1 PF07888.6 gi|307596063|ref|YP_003902380.1| - 0.014 13.6 1.5 0.019 13.2 1.1 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like ERM PF00769.14 gi|307596063|ref|YP_003902380.1| - 0.015 14.8 7.1 0.026 14.0 4.9 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family TBPIP PF07106.8 gi|307596063|ref|YP_003902380.1| - 0.017 14.7 1.4 0.028 13.9 1.0 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4482 PF14818.1 gi|307596063|ref|YP_003902380.1| - 0.027 15.1 6.2 0.051 14.2 4.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4482) DUF812 PF05667.6 gi|307596063|ref|YP_003902380.1| - 0.028 12.9 2.9 0.038 12.5 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) TPR_MLP1_2 PF07926.7 gi|307596063|ref|YP_003902380.1| - 0.03 14.0 2.5 0.053 13.2 1.7 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein CENP-F_leu_zip PF10473.4 gi|307596063|ref|YP_003902380.1| - 0.033 14.0 6.4 0.087 12.6 3.3 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Leu_zip PF15294.1 gi|307596063|ref|YP_003902380.1| - 0.035 13.2 7.1 0.6 9.1 5.2 1.9 1 1 0 1 1 1 0 Leucine zipper GrpE PF01025.14 gi|307596063|ref|YP_003902380.1| - 0.047 13.2 4.1 0.09 12.3 2.9 1.4 1 0 0 1 1 1 0 GrpE TMF_TATA_bd PF12325.3 gi|307596063|ref|YP_003902380.1| - 0.048 13.3 4.3 0.095 12.4 3.0 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Shugoshin_N PF07558.6 gi|307596063|ref|YP_003902380.1| - 0.05 13.3 4.7 0.074 12.7 2.3 1.7 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region DUF3450 PF11932.3 gi|307596063|ref|YP_003902380.1| - 0.051 12.8 0.4 0.077 12.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) APG6 PF04111.7 gi|307596063|ref|YP_003902380.1| - 0.051 12.6 2.6 0.09 11.8 1.8 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 BCAS2 PF05700.6 gi|307596063|ref|YP_003902380.1| - 0.054 12.9 3.4 0.087 12.2 2.3 1.2 1 0 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) Snapin_Pallidin PF14712.1 gi|307596063|ref|YP_003902380.1| - 0.06 13.6 1.4 0.12 12.7 1.0 1.5 1 0 0 1 1 1 0 Snapin/Pallidin DUF4201 PF13870.1 gi|307596063|ref|YP_003902380.1| - 0.072 12.5 4.7 0.11 11.8 3.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DUF904 PF06005.7 gi|307596063|ref|YP_003902380.1| - 0.08 13.2 10.6 0.17 12.1 6.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) DUF2407_C PF13373.1 gi|307596063|ref|YP_003902380.1| - 0.082 12.8 1.0 0.13 12.1 0.2 1.7 2 0 0 2 2 1 0 DUF2407 C-terminal domain Mnd1 PF03962.10 gi|307596063|ref|YP_003902380.1| - 0.082 12.5 1.3 0.18 11.4 0.9 1.5 1 0 0 1 1 1 0 Mnd1 family DUF2461 PF09365.5 gi|307596063|ref|YP_003902380.1| - 0.094 12.1 0.1 0.19 11.1 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) bZIP_Maf PF03131.12 gi|307596063|ref|YP_003902380.1| - 0.097 12.9 4.2 3.3 8.0 4.0 2.0 1 1 0 1 1 1 0 bZIP Maf transcription factor ADIP PF11559.3 gi|307596063|ref|YP_003902380.1| - 0.099 12.5 5.1 0.17 11.7 3.5 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF3618 PF12277.3 gi|307596063|ref|YP_003902380.1| - 0.1 12.6 2.3 0.36 10.8 1.6 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) Atg14 PF10186.4 gi|307596063|ref|YP_003902380.1| - 0.1 11.4 1.6 0.14 11.0 1.1 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Mod_r PF07200.8 gi|307596063|ref|YP_003902380.1| - 0.12 12.3 3.8 0.13 12.2 1.3 1.8 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Seryl_tRNA_N PF02403.17 gi|307596063|ref|YP_003902380.1| - 0.13 12.3 4.6 0.12 12.3 1.7 2.0 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain PQQ PF01011.16 gi|307596063|ref|YP_003902380.1| - 0.14 11.7 0.1 0.34 10.5 0.1 1.6 1 0 0 1 1 1 0 PQQ enzyme repeat Kinetocho_Slk19 PF12709.2 gi|307596063|ref|YP_003902380.1| - 0.15 12.1 3.5 0.26 11.3 1.6 1.9 1 1 1 2 2 2 0 Central kinetochore-associated Rho_Binding PF08912.6 gi|307596063|ref|YP_003902380.1| - 0.18 12.1 8.2 3.4 8.0 0.7 2.6 1 1 1 2 2 2 0 Rho Binding TSC22 PF01166.13 gi|307596063|ref|YP_003902380.1| - 0.21 11.5 10.3 2.3 8.2 7.2 2.3 1 1 0 1 1 1 0 TSC-22/dip/bun family Prefoldin_2 PF01920.15 gi|307596063|ref|YP_003902380.1| - 0.22 11.2 5.1 0.52 10.1 3.6 1.6 1 0 0 1 1 1 0 Prefoldin subunit TMF_DNA_bd PF12329.3 gi|307596063|ref|YP_003902380.1| - 0.24 11.2 8.7 0.59 9.9 6.0 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding CASP_C PF08172.7 gi|307596063|ref|YP_003902380.1| - 0.28 10.1 8.0 0.44 9.5 5.5 1.2 1 0 0 1 1 1 0 CASP C terminal Syntaxin PF00804.20 gi|307596063|ref|YP_003902380.1| - 0.29 11.2 2.9 0.71 10.0 2.0 1.6 1 0 0 1 1 1 0 Syntaxin Ax_dynein_light PF10211.4 gi|307596063|ref|YP_003902380.1| - 0.32 10.7 4.9 0.62 9.8 3.4 1.4 1 0 0 1 1 1 0 Axonemal dynein light chain Herpes_BLRF2 PF05812.7 gi|307596063|ref|YP_003902380.1| - 0.41 10.4 6.2 0.49 10.2 3.5 1.7 1 1 1 2 2 1 0 Herpesvirus BLRF2 protein DivIVA PF05103.8 gi|307596063|ref|YP_003902380.1| - 0.55 10.2 7.3 1.2 9.2 1.7 2.3 1 1 1 2 2 2 0 DivIVA protein NYD-SP28_assoc PF14775.1 gi|307596063|ref|YP_003902380.1| - 0.67 9.6 7.0 0.75 9.5 2.5 2.2 1 1 1 2 2 2 0 Sperm tail C-terminal domain MCC-bdg_PDZ PF10506.4 gi|307596063|ref|YP_003902380.1| - 0.89 9.4 5.0 0.36 10.6 1.5 1.9 2 0 0 2 2 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome PhoU PF01895.14 gi|307596063|ref|YP_003902380.1| - 0.9 10.0 3.6 1.6 9.2 1.7 1.9 2 0 0 2 2 1 0 PhoU domain Spc24 PF08286.6 gi|307596063|ref|YP_003902380.1| - 0.98 9.1 7.4 1.3 8.7 3.4 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF4200 PF13863.1 gi|307596063|ref|YP_003902380.1| - 2.2 8.2 9.2 1.6 8.6 4.8 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF4200) V_ATPase_I PF01496.14 gi|307596063|ref|YP_003902380.1| - 4.3 5.0 5.6 4.5 4.9 3.0 1.4 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family CR6_interact PF10147.4 gi|307596063|ref|YP_003902380.1| - 6.4 6.0 10.5 14 4.9 0.0 2.6 3 0 0 3 3 3 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 PBP PF01161.15 gi|307596064|ref|YP_003902381.1| - 2.3e-29 102.0 0.0 2.9e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein B5 PF03484.10 gi|307596065|ref|YP_003902382.1| - 8.5e-17 60.7 0.1 1.9e-13 50.0 0.0 2.8 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|307596065|ref|YP_003902382.1| - 1.1e-12 47.8 0.0 2e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain SinI PF08671.5 gi|307596065|ref|YP_003902382.1| - 0.095 12.1 0.0 1.9 7.9 0.0 2.4 2 0 0 2 2 2 0 Anti-repressor SinI tRNA_deacylase PF04414.7 gi|307596066|ref|YP_003902383.1| - 2.8e-54 183.5 0.0 3.2e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF429 PF04250.8 gi|307596067|ref|YP_003902384.1| - 1.6e-19 70.0 0.0 3.5e-19 68.9 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF429) zf-TFIIB PF13453.1 gi|307596069|ref|YP_003902386.1| - 0.0015 17.6 1.2 0.0022 17.1 0.8 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger HypA PF01155.14 gi|307596069|ref|YP_003902386.1| - 0.038 13.6 0.2 0.053 13.2 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-Di19 PF05605.7 gi|307596069|ref|YP_003902386.1| - 0.084 13.0 0.3 15 5.8 0.0 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF329 PF03884.9 gi|307596069|ref|YP_003902386.1| - 0.086 12.4 0.9 8.7 5.9 1.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF329) RNHCP PF12647.2 gi|307596069|ref|YP_003902386.1| - 0.1 12.4 0.2 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain PhnA_Zn_Ribbon PF08274.7 gi|307596069|ref|YP_003902386.1| - 0.1 12.3 4.2 0.29 10.9 2.9 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DZR PF12773.2 gi|307596069|ref|YP_003902386.1| - 0.12 12.2 0.4 0.21 11.4 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|307596069|ref|YP_003902386.1| - 0.12 12.0 0.4 0.21 11.2 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Elf1 PF05129.8 gi|307596069|ref|YP_003902386.1| - 0.13 11.9 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_2 PF13240.1 gi|307596069|ref|YP_003902386.1| - 0.19 11.2 3.5 1.9 8.0 2.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-FCS PF06467.9 gi|307596069|ref|YP_003902386.1| - 0.21 11.2 1.7 6.8 6.4 0.2 2.2 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zinc-ribbons_6 PF07191.7 gi|307596069|ref|YP_003902386.1| - 0.21 11.4 1.3 2.3 8.0 1.0 1.9 1 1 1 2 2 2 0 zinc-ribbons CpXC PF14353.1 gi|307596069|ref|YP_003902386.1| - 0.24 11.3 3.1 0.79 9.6 0.2 2.1 1 1 1 2 2 2 0 CpXC protein zf-C4_Topoisom PF01396.14 gi|307596069|ref|YP_003902386.1| - 0.26 10.8 4.3 3.1 7.3 3.1 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_ligase_ZBD PF03119.11 gi|307596069|ref|YP_003902386.1| - 0.29 10.8 1.9 0.37 10.5 0.3 2.0 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|307596069|ref|YP_003902386.1| - 0.4 10.7 3.8 3.5 7.7 0.6 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Thioredoxin_4 PF13462.1 gi|307596069|ref|YP_003902386.1| - 0.47 10.4 1.9 0.55 10.2 0.4 1.7 1 1 1 2 2 2 0 Thioredoxin TF_Zn_Ribbon PF08271.7 gi|307596069|ref|YP_003902386.1| - 0.62 9.4 2.8 6.3 6.1 2.3 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|307596069|ref|YP_003902386.1| - 0.7 9.7 3.5 16 5.4 2.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_KTR PF14205.1 gi|307596069|ref|YP_003902386.1| - 1.5 8.3 5.0 7.4 6.1 0.4 2.2 1 1 1 2 2 2 0 Cysteine-rich KTR zf-ribbon_3 PF13248.1 gi|307596069|ref|YP_003902386.1| - 2.6 7.3 6.0 1.9 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|307596071|ref|YP_003902388.1| - 3.1e-14 52.3 0.5 5.1e-14 51.6 0.3 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|307596071|ref|YP_003902388.1| - 8.2e-13 48.3 0.8 1.3e-12 47.7 0.6 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|307596071|ref|YP_003902388.1| - 0.012 15.4 0.3 0.02 14.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon PolC_DP2 PF03833.8 gi|307596071|ref|YP_003902388.1| - 0.013 13.1 0.0 0.015 13.0 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Lar_restr_allev PF14354.1 gi|307596071|ref|YP_003902388.1| - 0.017 15.4 2.6 2 8.8 0.1 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar NRDD PF13597.1 gi|307596071|ref|YP_003902388.1| - 0.051 11.6 0.1 0.069 11.2 0.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.14 gi|307596071|ref|YP_003902388.1| - 0.089 12.4 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|307596071|ref|YP_003902388.1| - 0.15 11.3 6.2 1.1 8.5 4.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|307596071|ref|YP_003902388.1| - 0.17 11.4 5.1 0.36 10.3 3.6 1.6 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|307596071|ref|YP_003902388.1| - 0.23 10.7 1.7 3.5 7.0 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|307596071|ref|YP_003902388.1| - 1.2 9.1 5.4 27 4.8 3.8 2.3 1 1 0 1 1 1 0 Zinc ribbon domain Thiolase_C PF02803.13 gi|307596072|ref|YP_003902389.1| - 8e-13 47.8 3.0 6.2e-11 41.7 0.0 3.5 4 0 0 4 4 4 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|307596072|ref|YP_003902389.1| - 3.7e-12 45.7 1.4 4.4e-10 38.9 0.0 2.2 1 1 0 2 2 2 2 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|307596072|ref|YP_003902389.1| - 1.8e-06 27.5 1.7 4.9e-05 22.9 0.3 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|307596072|ref|YP_003902389.1| - 5.2e-06 26.1 7.3 0.00023 20.7 1.8 2.8 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|307596072|ref|YP_003902389.1| - 8.9e-05 22.3 0.4 0.23 11.3 0.0 3.5 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain Mss4 PF04421.8 gi|307596072|ref|YP_003902389.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Mss4 protein Presenilin PF01080.12 gi|307596074|ref|YP_003902391.1| - 6.1e-10 38.4 27.3 1.4e-06 27.4 3.8 2.1 2 0 0 2 2 2 2 Presenilin DUF1119 PF06550.6 gi|307596074|ref|YP_003902391.1| - 0.075 12.1 30.0 0.1 11.7 13.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1119) Gemini_mov PF01708.11 gi|307596074|ref|YP_003902391.1| - 0.18 11.3 6.4 2.4 7.7 0.2 2.8 2 1 0 2 2 2 0 Geminivirus putative movement protein UPF0154 PF03672.8 gi|307596074|ref|YP_003902391.1| - 1 9.0 5.0 1.8 8.2 0.1 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) tRNA-synt_2d PF01409.15 gi|307596075|ref|YP_003902392.1| - 4.8e-82 274.8 0.0 6.7e-82 274.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_27 PF13463.1 gi|307596075|ref|YP_003902392.1| - 3.7e-05 23.9 0.0 0.00068 19.9 0.0 3.1 4 0 0 4 4 4 1 Winged helix DNA-binding domain tRNA-synt_2 PF00152.15 gi|307596075|ref|YP_003902392.1| - 3.8e-05 22.6 2.4 0.097 11.4 0.2 2.9 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) DUF4393 PF14337.1 gi|307596075|ref|YP_003902392.1| - 0.00046 19.6 1.5 0.038 13.4 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4393) AAA_assoc_C PF09821.4 gi|307596075|ref|YP_003902392.1| - 0.0011 19.2 0.5 0.0094 16.2 0.0 2.4 2 1 0 2 2 2 1 C-terminal AAA-associated domain DUF4364 PF14277.1 gi|307596075|ref|YP_003902392.1| - 0.0013 18.4 0.7 1.6 8.3 0.1 2.6 2 1 1 3 3 3 2 Domain of unknown function (DUF4364) HTH_36 PF13730.1 gi|307596075|ref|YP_003902392.1| - 0.0053 16.8 0.0 0.12 12.4 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|307596075|ref|YP_003902392.1| - 0.0087 15.4 0.0 2.8 7.4 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|307596075|ref|YP_003902392.1| - 0.0091 16.0 0.2 0.99 9.5 0.1 2.6 2 0 0 2 2 2 1 Transcriptional regulator Mrr_N PF14338.1 gi|307596075|ref|YP_003902392.1| - 0.01 15.8 0.1 0.55 10.3 0.1 3.1 3 1 0 3 3 3 0 Mrr N-terminal domain MarR PF01047.17 gi|307596075|ref|YP_003902392.1| - 0.019 14.6 0.8 0.32 10.7 0.0 3.1 3 0 0 3 3 3 0 MarR family CtsR PF05848.6 gi|307596075|ref|YP_003902392.1| - 0.019 14.9 0.5 0.046 13.6 0.4 1.6 1 0 0 1 1 1 0 Firmicute transcriptional repressor of class III stress genes (CtsR) HTH_34 PF13601.1 gi|307596075|ref|YP_003902392.1| - 0.028 14.4 0.1 0.11 12.5 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|307596075|ref|YP_003902392.1| - 0.041 13.6 0.0 0.69 9.7 0.1 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|307596075|ref|YP_003902392.1| - 0.11 12.3 0.2 3.1 7.6 0.0 2.9 3 0 0 3 3 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|307596075|ref|YP_003902392.1| - 0.19 11.2 1.0 40 3.8 0.1 3.4 3 1 0 3 3 3 0 LexA DNA binding domain ETF PF01012.16 gi|307596076|ref|YP_003902393.1| - 3.6e-36 124.3 3.8 5.4e-36 123.7 2.6 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|307596077|ref|YP_003902394.1| - 1.2e-31 108.1 0.0 3e-31 106.8 0.0 1.7 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|307596077|ref|YP_003902394.1| - 9.4e-10 38.4 0.3 2.6e-09 37.0 0.1 1.8 2 0 0 2 2 2 1 Electron transfer flavoprotein domain PBP5_C PF07943.8 gi|307596077|ref|YP_003902394.1| - 0.21 11.6 2.2 0.56 10.2 0.9 2.0 2 0 0 2 2 2 0 Penicillin-binding protein 5, C-terminal domain CCG PF02754.11 gi|307596078|ref|YP_003902395.1| - 1.1e-27 95.8 0.2 6.4e-13 48.5 0.2 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|307596078|ref|YP_003902395.1| - 6.1e-12 45.3 6.4 6.1e-12 45.3 4.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307596078|ref|YP_003902395.1| - 1.6e-08 34.7 5.2 1.6e-08 34.7 3.6 2.2 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307596078|ref|YP_003902395.1| - 4e-08 33.4 5.6 1.2e-07 31.9 3.9 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307596078|ref|YP_003902395.1| - 6.5e-08 32.2 8.8 7.3e-08 32.0 4.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307596078|ref|YP_003902395.1| - 6.2e-07 30.0 7.0 1.9e-06 28.5 4.9 1.9 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|307596078|ref|YP_003902395.1| - 3.9e-06 27.1 9.0 0.004 17.5 0.3 3.5 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307596078|ref|YP_003902395.1| - 8.2e-06 26.1 11.1 2.9e-05 24.3 7.2 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307596078|ref|YP_003902395.1| - 5.4e-05 23.1 8.4 0.052 13.9 0.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|307596078|ref|YP_003902395.1| - 0.028 14.3 21.1 0.22 11.4 3.4 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|307596078|ref|YP_003902395.1| - 0.028 14.3 20.5 0.035 14.0 1.5 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|307596078|ref|YP_003902395.1| - 0.064 12.8 2.5 1.8 8.2 0.0 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|307596078|ref|YP_003902395.1| - 0.071 12.7 17.3 0.1 12.2 3.3 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|307596078|ref|YP_003902395.1| - 0.24 11.9 7.6 1.8 9.2 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|307596078|ref|YP_003902395.1| - 0.31 10.9 12.8 8.5 6.3 1.7 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|307596078|ref|YP_003902395.1| - 0.47 11.1 24.8 0.48 11.1 3.6 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Pkinase PF00069.20 gi|307596079|ref|YP_003902396.1| - 2e-11 43.5 0.0 2.4e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.17 gi|307596079|ref|YP_003902396.1| - 2.2e-10 40.1 0.0 2.9e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|307596079|ref|YP_003902396.1| - 6.1e-09 35.9 0.1 0.0022 17.7 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|307596079|ref|YP_003902396.1| - 5.2e-06 25.6 0.0 2.6e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.12 gi|307596079|ref|YP_003902396.1| - 0.00088 18.4 0.0 0.00097 18.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.6 gi|307596079|ref|YP_003902396.1| - 0.0022 17.2 0.1 0.0041 16.3 0.1 1.4 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Ribosomal_S13_N PF08069.7 gi|307596080|ref|YP_003902397.1| - 3.7e-25 87.5 0.2 6.9e-25 86.6 0.2 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|307596080|ref|YP_003902397.1| - 2.4e-19 68.8 0.2 3.9e-19 68.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 RecX PF02631.11 gi|307596080|ref|YP_003902397.1| - 0.062 13.5 0.0 1.2 9.3 0.0 2.1 2 0 0 2 2 2 0 RecX family UPF0179 PF03684.8 gi|307596081|ref|YP_003902398.1| - 2.9e-25 88.5 0.1 3.2e-25 88.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Coagulin PF02035.10 gi|307596081|ref|YP_003902398.1| - 0.044 13.4 0.0 0.055 13.1 0.0 1.1 1 0 0 1 1 1 0 Coagulin Peptidase_M42 PF05343.9 gi|307596082|ref|YP_003902399.1| - 1.6e-87 292.9 0.0 1.8e-87 292.7 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|307596082|ref|YP_003902399.1| - 1.2e-05 24.9 0.0 2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|307596082|ref|YP_003902399.1| - 0.00014 21.6 0.0 0.00067 19.4 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Gp_dh_N PF00044.19 gi|307596083|ref|YP_003902400.1| - 3.4e-17 62.7 0.7 6.2e-16 58.7 0.2 2.6 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|307596083|ref|YP_003902400.1| - 2.7e-15 56.1 0.0 4.1e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|307596083|ref|YP_003902400.1| - 1.2e-10 41.3 0.3 2.3e-10 40.4 0.2 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|307596083|ref|YP_003902400.1| - 3.4e-05 24.3 0.0 7.9e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|307596083|ref|YP_003902400.1| - 0.0014 17.7 1.2 0.014 14.5 0.3 2.7 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|307596083|ref|YP_003902400.1| - 0.0039 17.5 0.2 0.018 15.4 0.0 2.1 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|307596083|ref|YP_003902400.1| - 0.016 15.5 0.0 0.039 14.2 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain PGK PF00162.14 gi|307596084|ref|YP_003902401.1| - 1.5e-105 352.9 0.1 1.8e-105 352.6 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Radical_SAM PF04055.16 gi|307596084|ref|YP_003902401.1| - 0.1 12.7 0.0 1.1 9.3 0.0 2.4 2 0 0 2 2 2 0 Radical SAM superfamily KH_1 PF00013.24 gi|307596085|ref|YP_003902402.1| - 4.3e-09 35.8 5.2 0.00041 19.9 0.3 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|307596085|ref|YP_003902402.1| - 0.00035 20.1 1.9 0.073 12.7 0.3 2.5 2 0 0 2 2 2 2 KH domain HTH_23 PF13384.1 gi|307596085|ref|YP_003902402.1| - 0.14 11.8 1.4 0.65 9.7 0.7 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|307596085|ref|YP_003902402.1| - 0.52 10.3 4.0 1.3 9.0 1.8 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain Ribosomal_S3Ae PF01015.13 gi|307596086|ref|YP_003902403.1| - 4e-67 225.3 0.6 4.5e-67 225.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Pcc1 PF09341.5 gi|307596087|ref|YP_003902404.1| - 0.0094 15.9 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 Radical_SAM PF04055.16 gi|307596089|ref|YP_003902406.1| - 1.7e-20 73.8 0.3 1.4e-19 70.8 0.0 2.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|307596089|ref|YP_003902406.1| - 4.2e-08 33.2 0.0 1.1e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|307596089|ref|YP_003902406.1| - 1.5e-06 28.3 0.0 3.1e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rad50_zn_hook PF04423.9 gi|307596089|ref|YP_003902406.1| - 0.36 10.3 2.0 7.4 6.1 0.1 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif TrmB PF01978.14 gi|307596090|ref|YP_003902407.1| - 1.3e-21 76.0 0.3 6e-21 73.9 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|307596090|ref|YP_003902407.1| - 8.2e-05 22.1 0.0 0.001 18.5 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|307596090|ref|YP_003902407.1| - 0.00075 18.8 0.0 0.0027 17.0 0.0 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|307596090|ref|YP_003902407.1| - 0.015 15.3 0.0 0.042 13.9 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator AcetylCoA_hydro PF02550.10 gi|307596090|ref|YP_003902407.1| - 0.025 14.3 0.3 0.064 13.0 0.0 1.8 2 0 0 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain HTH_5 PF01022.15 gi|307596090|ref|YP_003902407.1| - 0.029 14.0 0.0 0.064 12.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_9 PF08221.6 gi|307596090|ref|YP_003902407.1| - 0.061 13.2 0.0 0.26 11.2 0.0 2.1 2 1 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_27 PF13463.1 gi|307596090|ref|YP_003902407.1| - 0.065 13.5 0.0 0.33 11.3 0.0 2.2 3 0 0 3 3 3 0 Winged helix DNA-binding domain MarR PF01047.17 gi|307596090|ref|YP_003902407.1| - 0.077 12.7 0.0 0.51 10.0 0.0 2.1 2 0 0 2 2 2 0 MarR family Phage_rep_org_N PF09681.5 gi|307596090|ref|YP_003902407.1| - 0.1 12.2 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) MarR_2 PF12802.2 gi|307596090|ref|YP_003902407.1| - 0.12 12.1 0.0 0.43 10.2 0.0 2.0 1 1 0 1 1 1 0 MarR family tRNA-synt_2b PF00587.20 gi|307596091|ref|YP_003902408.1| - 1.3e-36 125.7 0.0 2.2e-36 125.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|307596091|ref|YP_003902408.1| - 5.3e-23 81.1 9.0 9.3e-23 80.3 6.3 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.6 gi|307596091|ref|YP_003902408.1| - 0.04 13.7 0.4 0.083 12.7 0.3 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DivIC PF04977.10 gi|307596091|ref|YP_003902408.1| - 0.05 13.0 6.1 1.1 8.7 0.1 2.5 1 1 1 2 2 2 0 Septum formation initiator ALIX_LYPXL_bnd PF13949.1 gi|307596091|ref|YP_003902408.1| - 0.067 12.1 4.3 0.11 11.3 3.0 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV OmpH PF03938.9 gi|307596091|ref|YP_003902408.1| - 0.099 12.5 1.2 1.4 8.8 0.3 2.5 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) Mnd1 PF03962.10 gi|307596091|ref|YP_003902408.1| - 0.11 12.1 4.1 0.18 11.4 2.9 1.2 1 0 0 1 1 1 0 Mnd1 family HCMV_UL139 PF12507.3 gi|307596091|ref|YP_003902408.1| - 0.15 12.2 1.0 0.34 11.0 0.7 1.5 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein IncA PF04156.9 gi|307596091|ref|YP_003902408.1| - 0.35 10.4 4.1 0.55 9.7 2.8 1.2 1 0 0 1 1 1 0 IncA protein TPP_enzyme_C PF02775.16 gi|307596092|ref|YP_003902409.1| - 3.2e-23 81.9 0.2 4.8e-23 81.4 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|307596092|ref|YP_003902409.1| - 0.0012 17.7 0.0 0.0017 17.3 0.0 1.1 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|307596092|ref|YP_003902409.1| - 0.022 13.4 0.2 0.032 12.9 0.1 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component POR_N PF01855.14 gi|307596093|ref|YP_003902410.1| - 3e-64 216.6 0.1 3.9e-64 216.3 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|307596093|ref|YP_003902410.1| - 0.0031 16.9 0.6 0.0045 16.4 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|307596093|ref|YP_003902410.1| - 0.012 15.4 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain Fer4 PF00037.22 gi|307596094|ref|YP_003902411.1| - 2e-16 58.8 17.3 1.9e-08 33.5 4.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307596094|ref|YP_003902411.1| - 2.4e-12 46.4 21.7 3.2e-08 33.2 8.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307596094|ref|YP_003902411.1| - 4.9e-12 45.1 14.0 7.8e-07 28.6 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|307596094|ref|YP_003902411.1| - 3e-11 43.5 9.3 4.3e-11 43.0 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307596094|ref|YP_003902411.1| - 8.8e-11 41.5 8.4 1.1e-10 41.2 5.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307596094|ref|YP_003902411.1| - 4.7e-10 38.7 12.5 6.7e-05 22.5 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|307596094|ref|YP_003902411.1| - 8.9e-10 39.1 7.6 7.9e-06 26.5 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|307596094|ref|YP_003902411.1| - 9.2e-09 35.4 11.1 1.2e-08 35.0 7.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307596094|ref|YP_003902411.1| - 1.7e-06 28.2 4.6 0.0071 16.6 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|307596094|ref|YP_003902411.1| - 2.3e-05 24.3 10.2 0.00077 19.4 8.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307596094|ref|YP_003902411.1| - 7.2e-05 22.8 13.5 0.0085 16.3 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|307596094|ref|YP_003902411.1| - 9.5e-05 22.8 10.0 0.043 14.3 2.5 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|307596094|ref|YP_003902411.1| - 0.00049 20.4 8.7 0.023 15.0 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|307596094|ref|YP_003902411.1| - 0.0017 18.7 13.7 0.026 14.9 3.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|307596094|ref|YP_003902411.1| - 0.016 15.7 6.9 0.016 15.7 4.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain MerT PF02411.10 gi|307596094|ref|YP_003902411.1| - 0.047 13.5 0.1 0.066 13.0 0.1 1.2 1 0 0 1 1 1 0 MerT mercuric transport protein Fer4_11 PF13247.1 gi|307596094|ref|YP_003902411.1| - 0.19 11.6 5.0 0.32 10.9 3.5 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.13 gi|307596095|ref|YP_003902412.1| - 3e-27 95.6 0.0 3.8e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase CxxCxxCC PF03692.10 gi|307596096|ref|YP_003902413.1| - 6.9e-19 68.1 1.5 9.5e-19 67.6 1.0 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF77 PF01910.12 gi|307596097|ref|YP_003902414.1| - 3.9e-27 93.7 0.3 4.3e-27 93.6 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 E1-E2_ATPase PF00122.15 gi|307596098|ref|YP_003902415.1| - 3.8e-50 170.0 0.3 9.6e-50 168.7 0.2 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|307596098|ref|YP_003902415.1| - 5.9e-40 137.9 1.1 1.2e-39 137.0 0.8 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|307596098|ref|YP_003902415.1| - 3.6e-17 62.2 0.0 2.5e-12 46.7 0.1 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|307596098|ref|YP_003902415.1| - 1e-14 55.1 0.0 2.6e-14 53.8 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|307596098|ref|YP_003902415.1| - 0.0001 21.9 1.5 0.00014 21.5 0.6 1.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase YHS PF04945.8 gi|307596099|ref|YP_003902416.1| - 2.9e-18 65.4 0.5 3.3e-18 65.2 0.3 1.1 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|307596099|ref|YP_003902416.1| - 0.0012 18.4 0.7 0.0017 17.9 0.5 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|307596099|ref|YP_003902416.1| - 0.0036 17.4 1.3 0.0057 16.7 0.9 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain Arc_trans_TRASH PF08394.5 gi|307596100|ref|YP_003902417.1| - 4.4e-13 49.1 7.0 7.6e-13 48.3 4.9 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.1 gi|307596100|ref|YP_003902417.1| - 7.8e-12 44.3 0.1 7.8e-12 44.3 0.1 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|307596100|ref|YP_003902417.1| - 6.5e-11 41.7 0.0 2.1e-10 40.1 0.0 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|307596100|ref|YP_003902417.1| - 1.9e-09 36.9 0.4 7.4e-09 35.0 0.7 1.7 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|307596100|ref|YP_003902417.1| - 6.7e-08 32.0 0.1 1.5e-07 30.9 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|307596100|ref|YP_003902417.1| - 7.2e-08 31.9 0.2 7.2e-08 31.9 0.1 2.1 3 0 0 3 3 2 1 HTH domain HTH_IclR PF09339.5 gi|307596100|ref|YP_003902417.1| - 1.4e-07 31.0 0.0 2.3e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|307596100|ref|YP_003902417.1| - 1.7e-06 27.4 0.1 3.8e-06 26.3 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|307596100|ref|YP_003902417.1| - 3.7e-06 26.5 0.0 9.6e-06 25.2 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_17 PF12728.2 gi|307596100|ref|YP_003902417.1| - 7.5e-06 26.1 0.1 5.6e-05 23.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_22 PF13309.1 gi|307596100|ref|YP_003902417.1| - 9e-06 25.3 0.4 2.4e-05 24.0 0.1 1.8 2 0 0 2 2 1 1 HTH domain HTH_36 PF13730.1 gi|307596100|ref|YP_003902417.1| - 2.3e-05 24.3 0.0 6.3e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|307596100|ref|YP_003902417.1| - 2.4e-05 23.6 0.1 4.5e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|307596100|ref|YP_003902417.1| - 3.4e-05 23.4 0.0 7.7e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|307596100|ref|YP_003902417.1| - 5.2e-05 22.7 0.1 9.6e-05 21.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|307596100|ref|YP_003902417.1| - 5.6e-05 22.9 0.1 0.00014 21.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.7 gi|307596100|ref|YP_003902417.1| - 0.00013 21.3 0.3 0.00049 19.5 0.1 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain DUF977 PF06163.6 gi|307596100|ref|YP_003902417.1| - 0.0002 21.1 0.4 0.00034 20.3 0.2 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_20 PF12840.2 gi|307596100|ref|YP_003902417.1| - 0.00023 20.8 0.0 0.00055 19.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|307596100|ref|YP_003902417.1| - 0.00029 20.9 0.2 0.00064 19.8 0.0 1.6 2 0 0 2 2 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|307596100|ref|YP_003902417.1| - 0.00031 20.6 1.4 0.00043 20.2 0.1 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|307596100|ref|YP_003902417.1| - 0.00044 19.7 0.2 0.0012 18.4 0.1 1.7 2 0 0 2 2 1 1 HTH DNA binding domain HTH_8 PF02954.14 gi|307596100|ref|YP_003902417.1| - 0.0007 19.0 0.1 0.0014 18.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family TetR_N PF00440.18 gi|307596100|ref|YP_003902417.1| - 0.00093 18.7 0.1 0.002 17.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Rrf2 PF02082.15 gi|307596100|ref|YP_003902417.1| - 0.001 19.1 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|307596100|ref|YP_003902417.1| - 0.0011 19.2 0.0 0.0021 18.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain zf-FCS PF06467.9 gi|307596100|ref|YP_003902417.1| - 0.0015 18.0 0.1 0.0025 17.4 0.1 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Sigma70_r4_2 PF08281.7 gi|307596100|ref|YP_003902417.1| - 0.0016 17.8 0.8 0.0032 16.9 0.1 1.8 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|307596100|ref|YP_003902417.1| - 0.0033 17.1 0.0 0.0093 15.7 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|307596100|ref|YP_003902417.1| - 0.0038 16.4 0.3 0.0095 15.2 0.2 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 RPA_C PF08784.6 gi|307596100|ref|YP_003902417.1| - 0.0058 17.0 0.0 0.0093 16.3 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal Cys_rich_CPXG PF14255.1 gi|307596100|ref|YP_003902417.1| - 0.0061 16.3 0.1 0.013 15.2 0.1 1.6 1 0 0 1 1 1 1 Cysteine-rich CPXCG EAP30 PF04157.11 gi|307596100|ref|YP_003902417.1| - 0.0063 15.7 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_6 PF01418.12 gi|307596100|ref|YP_003902417.1| - 0.0064 16.2 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family Penicillinase_R PF03965.11 gi|307596100|ref|YP_003902417.1| - 0.0073 16.3 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_31 PF13560.1 gi|307596100|ref|YP_003902417.1| - 0.0081 16.3 0.7 0.016 15.4 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain FeoC PF09012.5 gi|307596100|ref|YP_003902417.1| - 0.0096 15.6 0.0 0.033 13.9 0.0 1.8 2 0 0 2 2 1 1 FeoC like transcriptional regulator HTH_34 PF13601.1 gi|307596100|ref|YP_003902417.1| - 0.017 15.1 0.0 0.038 14.0 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|307596100|ref|YP_003902417.1| - 0.018 14.8 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Fe_dep_repress PF01325.14 gi|307596100|ref|YP_003902417.1| - 0.023 14.6 0.0 0.045 13.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_CodY PF08222.6 gi|307596100|ref|YP_003902417.1| - 0.023 14.0 0.2 0.055 12.8 0.1 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain SpoIIID PF12116.3 gi|307596100|ref|YP_003902417.1| - 0.031 14.2 0.2 0.059 13.3 0.1 1.4 1 0 0 1 1 1 0 Stage III sporulation protein D Sigma70_ECF PF07638.6 gi|307596100|ref|YP_003902417.1| - 0.039 13.6 0.1 0.072 12.7 0.1 1.4 1 0 0 1 1 1 0 ECF sigma factor Mga PF05043.8 gi|307596100|ref|YP_003902417.1| - 0.042 14.1 0.0 0.076 13.2 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain Crp PF00325.15 gi|307596100|ref|YP_003902417.1| - 0.042 13.3 0.9 0.098 12.1 0.1 2.1 2 0 0 2 2 1 0 Bacterial regulatory proteins, crp family DUF552 PF04472.7 gi|307596100|ref|YP_003902417.1| - 0.044 13.6 0.1 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF552) HTH_41 PF14502.1 gi|307596100|ref|YP_003902417.1| - 0.049 13.2 0.1 0.15 11.6 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|307596100|ref|YP_003902417.1| - 0.05 12.7 2.7 0.065 12.4 0.3 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF134 PF02001.11 gi|307596100|ref|YP_003902417.1| - 0.056 13.3 0.0 0.31 10.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF134 Zn_ribbon_recom PF13408.1 gi|307596100|ref|YP_003902417.1| - 0.061 13.5 5.2 0.11 12.7 3.6 1.4 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain HTH_Mga PF08280.6 gi|307596100|ref|YP_003902417.1| - 0.084 12.6 0.0 0.29 10.9 0.0 1.9 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_Tc3_2 PF01498.13 gi|307596100|ref|YP_003902417.1| - 0.092 12.8 0.1 0.22 11.6 0.0 1.7 1 0 0 1 1 1 0 Transposase HTH_32 PF13565.1 gi|307596100|ref|YP_003902417.1| - 0.095 13.5 0.1 0.21 12.4 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_3 PF01381.17 gi|307596100|ref|YP_003902417.1| - 0.1 12.4 0.1 0.25 11.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix DUF603 PF04645.7 gi|307596100|ref|YP_003902417.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF603 LZ_Tnp_IS481 PF13011.1 gi|307596100|ref|YP_003902417.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 TFIIE_alpha PF02002.12 gi|307596100|ref|YP_003902417.1| - 0.12 11.8 1.6 0.38 10.2 0.0 2.3 3 0 0 3 3 2 0 TFIIE alpha subunit Glyco_hydro_57 PF03065.10 gi|307596102|ref|YP_003902419.1| - 2.7e-48 164.7 1.5 7.5e-48 163.2 1.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 BPD_transp_1 PF00528.17 gi|307596103|ref|YP_003902420.1| - 5.3e-17 61.9 24.5 5.3e-17 61.9 17.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|307596104|ref|YP_003902421.1| - 5.3e-16 58.6 23.2 5.3e-16 58.6 16.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component FWWh PF14922.1 gi|307596104|ref|YP_003902421.1| - 0.58 9.6 4.2 0.37 10.2 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function SBP_bac_8 PF13416.1 gi|307596105|ref|YP_003902422.1| - 3e-23 82.9 2.1 3e-23 82.9 1.4 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|307596105|ref|YP_003902422.1| - 3.7e-15 56.4 1.3 7.3e-15 55.4 0.9 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VSP PF03302.8 gi|307596105|ref|YP_003902422.1| - 0.0022 16.6 2.0 0.0035 16.0 1.4 1.2 1 0 0 1 1 1 1 Giardia variant-specific surface protein Alpha-amylase PF00128.19 gi|307596106|ref|YP_003902423.1| - 7.4e-52 176.6 0.0 1.4e-50 172.5 0.0 2.1 1 1 0 1 1 1 1 Alpha amylase, catalytic domain ThiS PF02597.15 gi|307596107|ref|YP_003902424.1| - 1.9e-14 53.8 0.0 2.2e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|307596107|ref|YP_003902424.1| - 2.4e-06 27.5 0.0 2.7e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) tRNA-synt_1f PF01921.13 gi|307596108|ref|YP_003902425.1| - 2.2e-100 335.8 0.2 3.1e-100 335.3 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) HSP33 PF01430.14 gi|307596108|ref|YP_003902425.1| - 0.061 12.4 0.5 0.19 10.7 0.1 1.9 2 0 0 2 2 2 0 Hsp33 protein PIG-P PF08510.7 gi|307596109|ref|YP_003902426.1| - 0.43 10.2 6.1 0.047 13.3 1.3 1.6 1 1 0 2 2 2 0 PIG-P TMEM169 PF15052.1 gi|307596109|ref|YP_003902426.1| - 1.2 9.0 6.2 0.39 10.6 2.2 1.8 1 1 0 1 1 1 0 TMEM169 protein family DUF1211 PF06736.6 gi|307596109|ref|YP_003902426.1| - 1.4 9.1 5.6 2.8 8.1 3.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1211) EMP70 PF02990.11 gi|307596109|ref|YP_003902426.1| - 1.9 6.8 7.2 2 6.7 5.0 1.0 1 0 0 1 1 1 0 Endomembrane protein 70 DUF3611 PF12263.3 gi|307596109|ref|YP_003902426.1| - 2.7 7.3 8.3 0.24 10.7 2.0 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF3611) Tetraspannin PF00335.15 gi|307596109|ref|YP_003902426.1| - 4.2 6.5 10.8 5.2 6.2 7.5 1.1 1 0 0 1 1 1 0 Tetraspanin family SdpI PF13630.1 gi|307596109|ref|YP_003902426.1| - 5.3 6.8 14.1 3.2 7.5 1.2 2.3 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF3552 PF12072.3 gi|307596110|ref|YP_003902427.1| - 1.1e-05 24.8 105.2 0.08 12.1 18.1 6.5 1 1 4 6 6 6 4 Domain of unknown function (DUF3552) MscS_porin PF12795.2 gi|307596110|ref|YP_003902427.1| - 1.1e-05 24.9 85.4 0.3 10.3 7.4 5.7 1 1 4 5 5 5 4 Mechanosensitive ion channel porin domain Reo_sigmaC PF04582.7 gi|307596110|ref|YP_003902427.1| - 1.5e-05 24.3 43.0 0.028 13.5 7.3 5.0 1 1 4 5 5 5 4 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|307596110|ref|YP_003902427.1| - 7.4e-05 21.4 72.5 0.00045 18.8 12.8 3.3 1 1 2 3 3 3 2 AAA domain DUF869 PF05911.6 gi|307596110|ref|YP_003902427.1| - 8.9e-05 20.9 32.6 8.9e-05 20.9 22.6 3.2 1 1 1 3 3 3 2 Plant protein of unknown function (DUF869) Laminin_II PF06009.7 gi|307596110|ref|YP_003902427.1| - 0.00022 20.9 6.7 0.00022 20.9 4.6 6.0 1 1 5 6 6 6 2 Laminin Domain II IncA PF04156.9 gi|307596110|ref|YP_003902427.1| - 0.00045 19.8 99.0 0.057 13.0 4.0 5.2 1 1 4 5 5 5 4 IncA protein Spc7 PF08317.6 gi|307596110|ref|YP_003902427.1| - 0.00055 18.7 93.6 0.21 10.1 7.8 4.7 1 1 3 4 4 4 4 Spc7 kinetochore protein DUF948 PF06103.6 gi|307596110|ref|YP_003902427.1| - 0.0013 18.5 44.4 0.054 13.3 0.8 7.0 4 2 3 7 7 7 4 Bacterial protein of unknown function (DUF948) SNARE PF05739.14 gi|307596110|ref|YP_003902427.1| - 0.0016 18.1 1.3 0.0016 18.1 0.9 6.4 6 2 1 7 7 7 1 SNARE domain Baculo_PEP_C PF04513.7 gi|307596110|ref|YP_003902427.1| - 0.0035 17.1 57.2 5.9 6.7 0.3 6.5 1 1 3 4 4 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4200 PF13863.1 gi|307596110|ref|YP_003902427.1| - 0.0099 15.8 96.3 1.3 9.0 0.4 7.3 1 1 4 7 7 7 2 Domain of unknown function (DUF4200) ATG16 PF08614.6 gi|307596110|ref|YP_003902427.1| - 0.018 14.8 89.7 0.13 12.0 2.3 5.6 1 1 4 5 5 5 0 Autophagy protein 16 (ATG16) MCPsignal PF00015.16 gi|307596110|ref|YP_003902427.1| - 0.023 14.2 0.6 0.023 14.2 0.4 4.8 2 1 2 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Jnk-SapK_ap_N PF09744.4 gi|307596110|ref|YP_003902427.1| - 0.081 12.9 0.3 0.081 12.9 0.2 5.7 1 1 5 6 6 6 0 JNK_SAPK-associated protein-1 NPV_P10 PF05531.7 gi|307596110|ref|YP_003902427.1| - 0.11 12.7 48.7 0.11 12.7 0.3 8.0 2 1 5 7 7 7 0 Nucleopolyhedrovirus P10 protein FUSC PF04632.7 gi|307596110|ref|YP_003902427.1| - 0.31 9.4 26.7 1.1 7.6 2.4 3.1 1 1 2 3 3 3 0 Fusaric acid resistance protein family Nup54 PF13874.1 gi|307596110|ref|YP_003902427.1| - 0.53 9.9 69.8 0.13 11.9 5.6 6.3 1 1 5 6 6 5 0 Nucleoporin complex subunit 54 DUF812 PF05667.6 gi|307596110|ref|YP_003902427.1| - 0.59 8.5 75.5 2.7 6.3 26.5 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF812) DUF3407 PF11887.3 gi|307596110|ref|YP_003902427.1| - 0.68 9.1 14.4 0.11 11.7 1.4 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF3407) MtrB PF05440.7 gi|307596110|ref|YP_003902427.1| - 1 9.4 5.1 6.7 6.8 0.1 4.3 2 2 1 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B AAA_27 PF13514.1 gi|307596110|ref|YP_003902427.1| - 2.6 5.6 75.0 1.2 6.6 2.3 3.0 1 1 1 3 3 3 0 AAA domain WXG100 PF06013.7 gi|307596110|ref|YP_003902427.1| - 2.7 8.0 29.0 0.56 10.2 0.2 7.5 5 4 3 8 8 8 0 Proteins of 100 residues with WXG DUF3584 PF12128.3 gi|307596110|ref|YP_003902427.1| - 5.3 4.2 74.2 0.9 6.7 4.3 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) GAS PF13851.1 gi|307596110|ref|YP_003902427.1| - 7.1 5.7 94.1 0.046 12.9 7.9 4.8 1 1 3 5 5 5 0 Growth-arrest specific micro-tubule binding NPV_P10 PF05531.7 gi|307596111|ref|YP_003902428.1| - 7.2e-05 22.9 9.1 0.058 13.6 0.2 3.3 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein MscS_porin PF12795.2 gi|307596111|ref|YP_003902428.1| - 0.00019 20.8 9.2 0.00022 20.6 1.4 2.2 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain Baculo_PEP_C PF04513.7 gi|307596111|ref|YP_003902428.1| - 0.00024 20.9 11.5 0.00089 19.1 2.7 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus IncA PF04156.9 gi|307596111|ref|YP_003902428.1| - 0.00053 19.6 9.4 0.05 13.1 6.4 2.2 1 1 0 1 1 1 1 IncA protein Reo_sigmaC PF04582.7 gi|307596111|ref|YP_003902428.1| - 0.00078 18.7 10.2 0.08 12.1 0.4 1.9 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|307596111|ref|YP_003902428.1| - 0.00094 18.9 10.6 0.14 11.8 2.7 2.1 1 1 1 2 2 2 2 Laminin Domain II IL6 PF00489.12 gi|307596111|ref|YP_003902428.1| - 0.0011 18.5 0.9 0.84 9.2 0.0 2.2 1 1 1 2 2 2 1 Interleukin-6/G-CSF/MGF family PspA_IM30 PF04012.7 gi|307596111|ref|YP_003902428.1| - 0.0014 18.0 3.4 0.0021 17.4 0.7 2.0 1 1 1 2 2 2 1 PspA/IM30 family Spectrin PF00435.16 gi|307596111|ref|YP_003902428.1| - 0.0014 18.8 2.6 0.78 10.0 0.5 2.7 1 1 1 2 2 2 1 Spectrin repeat AAA_27 PF13514.1 gi|307596111|ref|YP_003902428.1| - 0.0017 16.1 1.4 0.0023 15.7 1.0 1.1 1 0 0 1 1 1 1 AAA domain FliJ PF02050.11 gi|307596111|ref|YP_003902428.1| - 0.0024 17.9 1.7 0.019 15.0 0.0 2.3 1 1 1 2 2 2 1 Flagellar FliJ protein DUF1664 PF07889.7 gi|307596111|ref|YP_003902428.1| - 0.0027 17.4 4.9 0.18 11.6 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|307596111|ref|YP_003902428.1| - 0.003 16.2 9.1 0.018 13.6 6.4 1.9 1 1 0 1 1 1 1 Spc7 kinetochore protein Nup54 PF13874.1 gi|307596111|ref|YP_003902428.1| - 0.0039 16.8 1.1 0.0039 16.8 0.7 2.2 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 COG2 PF06148.6 gi|307596111|ref|YP_003902428.1| - 0.0048 16.7 9.6 0.38 10.6 0.9 2.6 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 DHC_N1 PF08385.7 gi|307596111|ref|YP_003902428.1| - 0.0052 15.2 0.8 0.0069 14.8 0.5 1.1 1 0 0 1 1 1 1 Dynein heavy chain, N-terminal region 1 AAA_13 PF13166.1 gi|307596111|ref|YP_003902428.1| - 0.0053 15.2 4.8 0.17 10.3 0.7 1.9 1 1 1 2 2 2 1 AAA domain Occludin_ELL PF07303.8 gi|307596111|ref|YP_003902428.1| - 0.0055 17.4 3.0 1.1 10.0 0.2 2.7 1 1 1 3 3 2 1 Occludin homology domain LPP PF04728.8 gi|307596111|ref|YP_003902428.1| - 0.0056 16.4 0.1 0.0056 16.4 0.1 2.2 3 0 0 3 3 1 1 Lipoprotein leucine-zipper YPEB PF14620.1 gi|307596111|ref|YP_003902428.1| - 0.0076 15.3 4.8 0.36 9.8 2.3 2.0 1 1 1 2 2 2 1 YpeB sporulation Hanta_nucleocap PF00846.13 gi|307596111|ref|YP_003902428.1| - 0.0087 14.8 1.0 0.085 11.5 0.1 2.0 2 0 0 2 2 2 1 Hantavirus nucleocapsid protein MCPsignal PF00015.16 gi|307596111|ref|YP_003902428.1| - 0.011 15.2 4.1 0.61 9.6 0.6 2.3 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Vps5 PF09325.5 gi|307596111|ref|YP_003902428.1| - 0.013 14.8 6.4 0.17 11.1 1.2 2.8 1 1 2 3 3 3 0 Vps5 C terminal like TMF_TATA_bd PF12325.3 gi|307596111|ref|YP_003902428.1| - 0.015 15.0 10.9 0.2 11.3 3.5 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Uds1 PF15456.1 gi|307596111|ref|YP_003902428.1| - 0.019 14.9 6.8 0.25 11.3 1.5 2.5 1 1 1 2 2 2 0 Up-regulated During Septation Filament PF00038.16 gi|307596111|ref|YP_003902428.1| - 0.021 14.3 7.4 0.18 11.2 0.2 2.2 1 1 1 2 2 2 0 Intermediate filament protein CENP-Q PF13094.1 gi|307596111|ref|YP_003902428.1| - 0.022 14.7 9.6 0.72 9.8 0.2 3.0 1 1 2 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit Syntaxin_2 PF14523.1 gi|307596111|ref|YP_003902428.1| - 0.022 14.7 9.1 0.66 10.0 1.5 2.4 1 1 1 2 2 2 0 Syntaxin-like protein DUF773 PF05600.7 gi|307596111|ref|YP_003902428.1| - 0.024 13.4 4.6 0.031 13.0 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF773) Fib_alpha PF08702.5 gi|307596111|ref|YP_003902428.1| - 0.024 14.7 1.4 0.024 14.7 0.9 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family TetR PF13972.1 gi|307596111|ref|YP_003902428.1| - 0.025 14.0 0.5 1.2 8.5 0.1 2.2 2 0 0 2 2 2 0 Bacterial transcriptional repressor FemAB PF02388.11 gi|307596111|ref|YP_003902428.1| - 0.033 12.8 1.0 0.11 11.1 0.2 1.8 1 1 1 2 2 2 0 FemAB family Cortex-I_coil PF09304.5 gi|307596111|ref|YP_003902428.1| - 0.034 14.1 8.6 1.4 9.0 2.1 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil BLOC1_2 PF10046.4 gi|307596111|ref|YP_003902428.1| - 0.036 14.2 7.7 1.1 9.4 0.2 3.3 1 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.17 gi|307596111|ref|YP_003902428.1| - 0.037 14.0 5.9 0.7 9.9 0.4 2.5 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF3450 PF11932.3 gi|307596111|ref|YP_003902428.1| - 0.037 13.2 3.5 1.3 8.2 0.1 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) Snapin_Pallidin PF14712.1 gi|307596111|ref|YP_003902428.1| - 0.038 14.2 10.5 0.81 10.0 2.2 3.0 1 1 2 3 3 3 0 Snapin/Pallidin LXG PF04740.7 gi|307596111|ref|YP_003902428.1| - 0.039 13.7 3.1 0.13 12.0 0.2 2.5 1 1 2 3 3 3 0 LXG domain of WXG superfamily DUF2051 PF09738.4 gi|307596111|ref|YP_003902428.1| - 0.04 13.1 6.0 0.049 12.9 1.2 2.1 1 1 0 2 2 2 0 Double stranded RNA binding protein (DUF2051) DUF3585 PF12130.3 gi|307596111|ref|YP_003902428.1| - 0.042 13.6 5.2 0.057 13.2 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3585) Matrilin_ccoil PF10393.4 gi|307596111|ref|YP_003902428.1| - 0.042 13.2 4.1 0.66 9.3 0.1 3.1 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin UPF0184 PF03670.8 gi|307596111|ref|YP_003902428.1| - 0.046 13.8 0.2 0.046 13.8 0.2 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0184) TBPIP PF07106.8 gi|307596111|ref|YP_003902428.1| - 0.047 13.2 9.0 0.32 10.5 0.3 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HrpB7 PF09486.5 gi|307596111|ref|YP_003902428.1| - 0.048 13.5 1.1 3 7.7 0.1 2.8 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Tropomyosin PF00261.15 gi|307596111|ref|YP_003902428.1| - 0.049 12.7 4.9 0.053 12.6 0.1 2.3 1 1 1 2 2 2 0 Tropomyosin ADIP PF11559.3 gi|307596111|ref|YP_003902428.1| - 0.052 13.4 8.6 0.069 13.0 0.2 2.3 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding HHH_8 PF14716.1 gi|307596111|ref|YP_003902428.1| - 0.059 13.5 0.4 6.8 6.9 0.0 3.5 2 1 2 4 4 3 0 Helix-hairpin-helix domain HSBP1 PF06825.7 gi|307596111|ref|YP_003902428.1| - 0.06 12.9 1.1 0.37 10.4 0.3 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 STAT_alpha PF01017.15 gi|307596111|ref|YP_003902428.1| - 0.064 12.9 3.0 0.3 10.8 2.0 2.1 1 1 0 1 1 1 0 STAT protein, all-alpha domain MitMem_reg PF13012.1 gi|307596111|ref|YP_003902428.1| - 0.072 13.1 8.1 0.69 10.0 2.3 2.2 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function DUF812 PF05667.6 gi|307596111|ref|YP_003902428.1| - 0.079 11.4 5.7 0.097 11.1 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF3373 PF11853.3 gi|307596111|ref|YP_003902428.1| - 0.081 11.4 0.2 0.15 10.5 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3373) FlaC_arch PF05377.6 gi|307596111|ref|YP_003902428.1| - 0.084 12.7 14.3 0.15 11.9 0.9 4.1 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) DUF2400 PF09674.5 gi|307596111|ref|YP_003902428.1| - 0.088 12.4 1.6 3.4 7.2 0.1 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2400) Med4 PF10018.4 gi|307596111|ref|YP_003902428.1| - 0.091 12.1 6.8 1.2 8.4 4.7 2.4 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 V_ATPase_I PF01496.14 gi|307596111|ref|YP_003902428.1| - 0.093 10.5 4.7 1.2 6.8 3.3 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Med13_N PF11597.3 gi|307596111|ref|YP_003902428.1| - 0.095 11.3 0.1 0.16 10.6 0.1 1.3 1 0 0 1 1 1 0 Mediator complex subunit 13 N-terminal Sec34 PF04136.10 gi|307596111|ref|YP_003902428.1| - 0.1 12.3 4.8 3.6 7.2 0.3 2.2 1 1 1 2 2 2 0 Sec34-like family APC8 PF04049.8 gi|307596111|ref|YP_003902428.1| - 0.1 12.3 0.2 0.34 10.6 0.0 1.8 1 1 1 2 2 2 0 Anaphase promoting complex subunit 8 / Cdc23 DivIC PF04977.10 gi|307596111|ref|YP_003902428.1| - 0.11 11.9 0.2 0.11 11.9 0.2 3.0 2 1 0 3 3 3 0 Septum formation initiator DASH_Spc34 PF08657.5 gi|307596111|ref|YP_003902428.1| - 0.11 12.1 7.1 0.44 10.1 0.1 2.8 1 1 2 3 3 3 0 DASH complex subunit Spc34 HSCB_C PF07743.8 gi|307596111|ref|YP_003902428.1| - 0.11 12.9 0.5 0.11 12.9 0.3 2.5 1 1 2 3 3 2 0 HSCB C-terminal oligomerisation domain Atg14 PF10186.4 gi|307596111|ref|YP_003902428.1| - 0.18 10.7 6.1 0.47 9.3 3.9 1.7 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Prefoldin_2 PF01920.15 gi|307596111|ref|YP_003902428.1| - 0.19 11.4 9.1 0.66 9.7 0.3 3.1 2 1 2 4 4 4 0 Prefoldin subunit Syntaxin-6_N PF09177.6 gi|307596111|ref|YP_003902428.1| - 0.2 12.1 7.0 2.1 8.7 0.3 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal CorA PF01544.13 gi|307596111|ref|YP_003902428.1| - 0.22 10.5 8.3 0.79 8.6 5.4 1.9 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein YgaB PF14182.1 gi|307596111|ref|YP_003902428.1| - 0.27 11.4 6.4 0.54 10.5 0.7 3.0 1 1 3 4 4 4 0 YgaB-like protein APG17 PF04108.7 gi|307596111|ref|YP_003902428.1| - 0.28 9.9 6.5 0.4 9.4 3.8 1.6 1 1 0 1 1 1 0 Autophagy protein Apg17 DASH_Dam1 PF08653.5 gi|307596111|ref|YP_003902428.1| - 0.28 10.9 4.5 2.3 8.0 0.1 3.0 3 0 0 3 3 3 0 DASH complex subunit Dam1 DUF948 PF06103.6 gi|307596111|ref|YP_003902428.1| - 0.28 11.0 6.2 1.9 8.3 0.2 2.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Tropomyosin_1 PF12718.2 gi|307596111|ref|YP_003902428.1| - 0.28 11.0 4.6 0.82 9.5 0.1 2.2 2 1 0 2 2 2 0 Tropomyosin like Hemagglutinin PF00509.13 gi|307596111|ref|YP_003902428.1| - 0.29 9.2 1.6 4.8 5.2 0.0 2.1 2 0 0 2 2 2 0 Haemagglutinin Tweety PF04906.8 gi|307596111|ref|YP_003902428.1| - 0.3 9.4 3.4 0.26 9.6 0.9 1.8 1 1 1 2 2 2 0 Tweety IFT57 PF10498.4 gi|307596111|ref|YP_003902428.1| - 0.35 9.5 7.3 2.7 6.6 1.7 2.2 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Spc24 PF08286.6 gi|307596111|ref|YP_003902428.1| - 0.37 10.4 8.6 0.74 9.5 0.3 2.9 1 1 1 3 3 3 0 Spc24 subunit of Ndc80 MbeD_MobD PF04899.7 gi|307596111|ref|YP_003902428.1| - 0.39 10.6 4.2 0.49 10.3 0.1 2.8 2 1 0 2 2 2 0 MbeD/MobD like WEMBL PF05701.6 gi|307596111|ref|YP_003902428.1| - 0.45 8.9 11.1 0.46 8.8 2.2 2.1 1 1 1 2 2 2 0 Weak chloroplast movement under blue light HxlR PF01638.12 gi|307596111|ref|YP_003902428.1| - 0.47 10.1 3.2 6.7 6.4 0.1 3.0 2 1 1 3 3 3 0 HxlR-like helix-turn-helix ING PF12998.2 gi|307596111|ref|YP_003902428.1| - 0.47 10.7 4.3 8.7 6.6 0.4 2.6 1 1 1 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding DUF2730 PF10805.3 gi|307596111|ref|YP_003902428.1| - 0.49 10.1 4.1 0.73 9.5 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) DUF3552 PF12072.3 gi|307596111|ref|YP_003902428.1| - 0.51 9.5 5.7 1.9 7.6 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.3 gi|307596111|ref|YP_003902428.1| - 0.58 10.0 11.0 0.56 10.0 1.0 3.2 2 1 2 4 4 4 0 TATA element modulatory factor 1 DNA binding Syntaxin PF00804.20 gi|307596111|ref|YP_003902428.1| - 0.59 10.3 7.1 1.7e+02 2.4 4.9 2.8 1 1 0 1 1 1 0 Syntaxin ATP-synt_D PF01813.12 gi|307596111|ref|YP_003902428.1| - 0.62 9.5 7.1 0.73 9.3 0.2 2.2 1 1 0 1 1 1 0 ATP synthase subunit D TPR_MLP1_2 PF07926.7 gi|307596111|ref|YP_003902428.1| - 0.69 9.6 9.5 2 8.1 2.4 2.6 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein XhlA PF10779.4 gi|307596111|ref|YP_003902428.1| - 0.74 9.7 5.2 1.2 9.0 0.2 2.7 2 1 1 3 3 3 0 Haemolysin XhlA DASH_Hsk3 PF08227.6 gi|307596111|ref|YP_003902428.1| - 0.83 9.8 4.2 0.29 11.3 0.3 2.2 2 0 0 2 2 1 0 DASH complex subunit Hsk3 like Baculo_p24 PF05073.7 gi|307596111|ref|YP_003902428.1| - 0.85 9.1 5.1 5.8 6.4 0.3 2.2 1 1 1 2 2 2 0 Baculovirus P24 capsid protein Filo_VP35 PF02097.10 gi|307596111|ref|YP_003902428.1| - 0.86 8.7 4.5 0.54 9.3 0.2 2.0 1 1 1 2 2 2 0 Filoviridae VP35 CENP-F_leu_zip PF10473.4 gi|307596111|ref|YP_003902428.1| - 0.94 9.3 12.3 0.45 10.3 1.9 2.4 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF972 PF06156.8 gi|307596111|ref|YP_003902428.1| - 1 9.7 7.8 3.9 7.8 0.3 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DivIVA PF05103.8 gi|307596111|ref|YP_003902428.1| - 1.2 9.2 5.7 12 5.9 3.8 2.3 1 1 1 2 2 2 0 DivIVA protein EMP24_GP25L PF01105.19 gi|307596111|ref|YP_003902428.1| - 1.2 8.7 3.7 5 6.7 0.1 2.7 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF1759 PF03564.10 gi|307596111|ref|YP_003902428.1| - 1.3 8.8 5.1 1 9.1 1.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) Phasin PF05597.6 gi|307596111|ref|YP_003902428.1| - 1.3 8.7 5.9 7.5 6.3 0.1 3.0 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) ATG16 PF08614.6 gi|307596111|ref|YP_003902428.1| - 1.4 8.7 8.7 0.88 9.3 0.4 2.2 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) GP41 PF00517.12 gi|307596111|ref|YP_003902428.1| - 1.4 8.4 5.0 1.9 8.0 0.1 2.3 1 1 0 2 2 2 0 Retroviral envelope protein SlyX PF04102.7 gi|307596111|ref|YP_003902428.1| - 1.6 9.1 5.4 1.9 8.9 0.2 3.0 2 1 3 5 5 3 0 SlyX Lebercilin PF15619.1 gi|307596111|ref|YP_003902428.1| - 1.7 7.9 7.5 3.4 7.0 0.6 2.3 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease ALIX_LYPXL_bnd PF13949.1 gi|307596111|ref|YP_003902428.1| - 1.8 7.4 10.7 17 4.2 7.4 2.0 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV CENP-R PF06729.7 gi|307596111|ref|YP_003902428.1| - 1.8 8.2 6.2 2.1 8.0 0.6 2.6 1 1 0 2 2 2 0 Kinetochore component, CENP-R DUF2205 PF10224.4 gi|307596111|ref|YP_003902428.1| - 1.8 8.1 8.3 1.8 8.1 0.1 3.0 2 1 0 3 3 2 0 Predicted coiled-coil protein (DUF2205) DUF4164 PF13747.1 gi|307596111|ref|YP_003902428.1| - 2.1 8.5 11.2 3.5 7.8 0.7 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) DUF724 PF05266.9 gi|307596111|ref|YP_003902428.1| - 2.3 7.7 5.2 2.4 7.7 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) PspB PF06667.7 gi|307596111|ref|YP_003902428.1| - 3.5 7.6 5.0 5.9 6.8 0.2 2.7 2 1 1 3 3 2 0 Phage shock protein B DASH_Dad3 PF08656.5 gi|307596111|ref|YP_003902428.1| - 3.5 7.3 12.6 3.9 7.2 2.3 3.6 1 1 2 3 3 3 0 DASH complex subunit Dad3 Sec20 PF03908.8 gi|307596111|ref|YP_003902428.1| - 8.8 6.1 8.7 6 6.6 0.4 2.8 1 1 2 3 3 3 0 Sec20 DUF904 PF06005.7 gi|307596111|ref|YP_003902428.1| - 9 6.6 11.2 31 4.9 0.5 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|307596111|ref|YP_003902428.1| - 10 6.1 8.8 4.9 7.2 0.5 3.4 3 2 0 3 3 3 0 bZIP transcription factor Hexapep PF00132.19 gi|307596112|ref|YP_003902429.1| - 3.8e-32 108.3 45.5 1.1e-08 34.1 2.7 5.5 3 1 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|307596112|ref|YP_003902429.1| - 1.5e-16 59.6 34.6 2.3e-08 33.4 2.2 4.9 4 1 0 5 5 5 4 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|307596112|ref|YP_003902429.1| - 1.1 7.7 2.7 1.3 7.5 0.7 1.9 2 1 0 2 2 2 0 L-fucokinase AAA PF00004.24 gi|307596113|ref|YP_003902430.1| - 4e-100 331.2 0.0 6.1e-50 168.8 0.0 2.9 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|307596113|ref|YP_003902430.1| - 1.7e-30 104.7 0.1 2e-29 101.3 0.3 2.7 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|307596113|ref|YP_003902430.1| - 2.7e-15 56.0 0.0 2.8e-07 29.8 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|307596113|ref|YP_003902430.1| - 2.5e-14 54.1 0.1 2.2e-07 31.6 0.0 3.3 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|307596113|ref|YP_003902430.1| - 4.8e-14 52.6 0.2 6.7e-06 26.2 0.0 4.3 2 2 1 3 3 3 2 AAA domain AAA_2 PF07724.9 gi|307596113|ref|YP_003902430.1| - 1.2e-13 51.3 0.0 2.3e-07 30.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|307596113|ref|YP_003902430.1| - 5.3e-13 49.3 0.1 5.8e-06 26.4 0.0 3.6 3 1 0 3 3 2 2 AAA ATPase domain AAA_5 PF07728.9 gi|307596113|ref|YP_003902430.1| - 1.9e-12 47.0 0.8 0.00013 21.7 0.1 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|307596113|ref|YP_003902430.1| - 3.4e-12 46.3 0.0 4.7e-06 26.5 0.0 3.0 2 1 1 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|307596113|ref|YP_003902430.1| - 4.8e-12 45.9 0.0 2.1e-05 24.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|307596113|ref|YP_003902430.1| - 4.8e-10 38.7 0.1 0.00052 18.8 0.0 2.8 3 0 0 3 3 3 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|307596113|ref|YP_003902430.1| - 7.7e-10 38.2 0.0 0.00025 20.2 0.0 2.7 3 0 0 3 3 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|307596113|ref|YP_003902430.1| - 1.1e-09 38.0 0.5 0.0011 18.3 0.1 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|307596113|ref|YP_003902430.1| - 3.5e-09 36.2 1.6 0.00084 19.0 0.0 3.3 3 0 0 3 3 2 2 Part of AAA domain AAA_28 PF13521.1 gi|307596113|ref|YP_003902430.1| - 1.6e-08 34.6 0.0 0.0018 18.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|307596113|ref|YP_003902430.1| - 2.3e-08 34.4 0.0 0.0041 17.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|307596113|ref|YP_003902430.1| - 1.4e-07 31.0 0.0 6e-07 29.0 0.0 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 Mg_chelatase PF01078.16 gi|307596113|ref|YP_003902430.1| - 4.6e-07 29.1 0.9 0.023 13.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Vps4_C PF09336.5 gi|307596113|ref|YP_003902430.1| - 8e-07 28.8 1.1 0.0078 16.0 0.0 3.7 3 0 0 3 3 3 1 Vps4 C terminal oligomerisation domain Sigma54_activat PF00158.21 gi|307596113|ref|YP_003902430.1| - 9.9e-07 28.3 0.2 0.079 12.4 0.0 3.4 2 2 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|307596113|ref|YP_003902430.1| - 2.4e-06 26.9 0.1 0.061 12.5 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|307596113|ref|YP_003902430.1| - 6e-06 26.3 0.0 0.062 13.3 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|307596113|ref|YP_003902430.1| - 6.7e-06 25.2 0.0 0.03 13.2 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|307596113|ref|YP_003902430.1| - 8e-06 25.3 9.0 0.38 10.1 0.1 4.5 2 2 2 4 4 4 2 AAA domain RNA_helicase PF00910.17 gi|307596113|ref|YP_003902430.1| - 8.5e-06 25.9 0.0 0.24 11.5 0.0 2.8 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.22 gi|307596113|ref|YP_003902430.1| - 1.3e-05 25.4 0.0 0.16 12.2 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.1 gi|307596113|ref|YP_003902430.1| - 2.2e-05 24.1 0.1 0.23 10.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|307596113|ref|YP_003902430.1| - 3e-05 23.7 0.3 0.41 10.2 0.0 3.8 4 0 0 4 4 4 1 NACHT domain KaiC PF06745.8 gi|307596113|ref|YP_003902430.1| - 3.3e-05 23.1 0.7 0.31 10.1 0.0 3.3 2 1 1 3 3 3 2 KaiC Arch_ATPase PF01637.13 gi|307596113|ref|YP_003902430.1| - 4.6e-05 23.2 0.6 0.16 11.6 0.1 3.6 2 2 1 3 3 3 1 Archaeal ATPase AAA_3 PF07726.6 gi|307596113|ref|YP_003902430.1| - 0.00027 20.5 0.0 0.72 9.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|307596113|ref|YP_003902430.1| - 0.00039 19.9 0.0 0.3 10.5 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain DUF2075 PF09848.4 gi|307596113|ref|YP_003902430.1| - 0.0005 19.1 0.0 0.3 10.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Guanylate_kin PF00625.16 gi|307596113|ref|YP_003902430.1| - 0.00069 19.0 0.3 13 5.1 0.0 4.2 2 2 2 4 4 4 0 Guanylate kinase T2SE PF00437.15 gi|307596113|ref|YP_003902430.1| - 0.00088 18.2 0.0 1.4 7.7 0.0 2.7 2 0 0 2 2 2 2 Type II/IV secretion system protein Bac_DnaA PF00308.13 gi|307596113|ref|YP_003902430.1| - 0.0012 18.5 0.0 0.59 9.7 0.0 2.9 3 0 0 3 3 2 1 Bacterial dnaA protein AAA_11 PF13086.1 gi|307596113|ref|YP_003902430.1| - 0.0013 18.3 0.0 1.1 8.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain SKI PF01202.17 gi|307596113|ref|YP_003902430.1| - 0.0017 18.2 0.0 2.3 8.0 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase Parvo_NS1 PF01057.12 gi|307596113|ref|YP_003902430.1| - 0.0017 17.2 0.1 1.6 7.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|307596113|ref|YP_003902430.1| - 0.0026 17.5 5.0 4.6 6.9 0.0 4.7 4 1 1 5 5 4 0 NTPase ResIII PF04851.10 gi|307596113|ref|YP_003902430.1| - 0.0041 16.9 0.0 3.6 7.3 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NB-ARC PF00931.17 gi|307596113|ref|YP_003902430.1| - 0.0042 15.9 0.0 3.9 6.2 0.0 2.9 3 0 0 3 3 3 0 NB-ARC domain AAA_30 PF13604.1 gi|307596113|ref|YP_003902430.1| - 0.0045 16.5 2.5 1.6 8.2 0.0 3.6 5 0 0 5 5 3 1 AAA domain PduV-EutP PF10662.4 gi|307596113|ref|YP_003902430.1| - 0.012 15.0 0.0 2.7 7.4 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation UPF0079 PF02367.12 gi|307596113|ref|YP_003902430.1| - 0.012 15.2 0.0 6.9 6.3 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Viral_helicase1 PF01443.13 gi|307596113|ref|YP_003902430.1| - 0.019 14.5 0.0 0.45 9.9 0.0 2.6 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|307596113|ref|YP_003902430.1| - 0.029 13.8 0.0 6.9 6.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRPRB PF09439.5 gi|307596113|ref|YP_003902430.1| - 0.055 12.6 0.0 4.4 6.4 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AFG1_ATPase PF03969.11 gi|307596113|ref|YP_003902430.1| - 0.068 11.9 0.0 11 4.6 0.0 3.0 3 0 0 3 3 3 0 AFG1-like ATPase Miro PF08477.8 gi|307596113|ref|YP_003902430.1| - 0.075 13.5 0.0 16 5.9 0.0 2.9 3 0 0 3 3 2 0 Miro-like protein AAA_10 PF12846.2 gi|307596113|ref|YP_003902430.1| - 0.078 12.3 1.1 16 4.8 0.0 3.2 2 1 0 3 3 3 0 AAA-like domain KTI12 PF08433.5 gi|307596113|ref|YP_003902430.1| - 0.079 12.1 0.0 12 5.0 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 cobW PF02492.14 gi|307596113|ref|YP_003902430.1| - 0.1 12.0 0.2 15 5.0 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2479 PF10651.4 gi|307596116|ref|YP_003902433.1| - 0.066 12.7 0.3 0.1 12.1 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF2479) DUF809 PF05663.6 gi|307596116|ref|YP_003902433.1| - 0.076 12.9 1.0 0.1 12.5 0.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF809) ACP_syn_III_C PF08541.5 gi|307596117|ref|YP_003902434.1| - 4.9e-14 52.1 0.0 1.6e-13 50.4 0.0 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|307596117|ref|YP_003902434.1| - 0.00011 21.7 0.1 0.002 17.6 0.0 2.0 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.18 gi|307596117|ref|YP_003902434.1| - 0.00011 21.2 0.0 0.00021 20.3 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.12 gi|307596117|ref|YP_003902434.1| - 0.00031 20.3 0.0 0.00063 19.3 0.0 1.5 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.5 gi|307596117|ref|YP_003902434.1| - 0.0015 18.1 0.7 0.0083 15.7 0.1 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|307596117|ref|YP_003902434.1| - 0.0099 15.3 0.2 0.5 9.8 0.0 2.4 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain HTH_24 PF13412.1 gi|307596118|ref|YP_003902435.1| - 1.7e-08 33.7 1.5 1.9e-08 33.5 0.3 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.6 gi|307596118|ref|YP_003902435.1| - 7.4e-07 28.9 0.0 1.2e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Mga PF08280.6 gi|307596118|ref|YP_003902435.1| - 2.6e-06 27.0 0.5 3.7e-06 26.5 0.3 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain FaeA PF04703.7 gi|307596118|ref|YP_003902435.1| - 1.1e-05 25.4 0.0 1.5e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.14 gi|307596118|ref|YP_003902435.1| - 3.3e-05 23.4 0.1 6.2e-05 22.6 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|307596118|ref|YP_003902435.1| - 5.4e-05 22.7 0.0 9.2e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|307596118|ref|YP_003902435.1| - 6.5e-05 22.8 0.1 0.00014 21.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|307596118|ref|YP_003902435.1| - 8.5e-05 22.1 0.1 0.00016 21.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|307596118|ref|YP_003902435.1| - 0.0009 19.0 0.3 0.0014 18.3 0.0 1.4 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|307596118|ref|YP_003902435.1| - 0.0015 18.1 0.0 0.0027 17.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|307596118|ref|YP_003902435.1| - 0.0017 18.4 0.4 0.0021 18.1 0.3 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_45 PF14947.1 gi|307596118|ref|YP_003902435.1| - 0.0019 17.9 0.1 0.0023 17.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.1 gi|307596118|ref|YP_003902435.1| - 0.0019 18.3 0.1 0.0025 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.1 gi|307596118|ref|YP_003902435.1| - 0.0021 18.3 0.0 0.0033 17.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|307596118|ref|YP_003902435.1| - 0.0031 16.9 2.6 0.012 15.0 1.8 1.8 1 1 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|307596118|ref|YP_003902435.1| - 0.0052 16.1 1.1 0.064 12.7 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|307596118|ref|YP_003902435.1| - 0.0056 16.2 0.2 0.0085 15.7 0.1 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|307596118|ref|YP_003902435.1| - 0.013 15.2 0.1 0.013 15.2 0.1 1.4 2 0 0 2 2 1 0 MarR family HTH_AsnC-type PF13404.1 gi|307596118|ref|YP_003902435.1| - 0.013 14.9 0.1 0.13 11.7 0.0 2.2 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.7 gi|307596118|ref|YP_003902435.1| - 0.02 14.4 0.1 0.041 13.4 0.0 1.6 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain FUR PF01475.14 gi|307596118|ref|YP_003902435.1| - 0.026 14.4 0.2 0.041 13.8 0.1 1.4 1 1 0 1 1 1 0 Ferric uptake regulator family Rrf2 PF02082.15 gi|307596118|ref|YP_003902435.1| - 0.033 14.3 0.1 0.039 14.0 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.4 gi|307596118|ref|YP_003902435.1| - 0.034 14.0 0.3 0.052 13.4 0.2 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_41 PF14502.1 gi|307596118|ref|YP_003902435.1| - 0.034 13.7 0.5 0.9 9.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Mrr_N PF14338.1 gi|307596118|ref|YP_003902435.1| - 0.046 13.8 0.2 0.088 12.9 0.2 1.5 1 1 0 1 1 1 0 Mrr N-terminal domain RNA_pol_Rpc34 PF05158.7 gi|307596118|ref|YP_003902435.1| - 0.051 12.7 0.5 0.056 12.6 0.4 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Mnd1 PF03962.10 gi|307596118|ref|YP_003902435.1| - 0.053 13.1 1.5 0.077 12.6 0.3 1.6 1 1 1 2 2 2 0 Mnd1 family B-block_TFIIIC PF04182.7 gi|307596118|ref|YP_003902435.1| - 0.087 12.6 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC CTP-dep_RFKase PF01982.11 gi|307596119|ref|YP_003902436.1| - 1.4e-45 153.8 0.0 2.2e-45 153.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.17 gi|307596119|ref|YP_003902436.1| - 0.00087 18.9 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|307596119|ref|YP_003902436.1| - 0.0041 16.9 0.0 0.0076 16.0 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.1 gi|307596119|ref|YP_003902436.1| - 0.0076 15.6 0.0 0.016 14.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Antitoxin-MazE PF04014.13 gi|307596119|ref|YP_003902436.1| - 0.0089 15.7 0.0 0.13 12.0 0.0 2.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE MarR_2 PF12802.2 gi|307596119|ref|YP_003902436.1| - 0.0091 15.6 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|307596119|ref|YP_003902436.1| - 0.028 14.2 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|307596119|ref|YP_003902436.1| - 0.044 13.7 0.1 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain PBP_dimer PF03717.10 gi|307596119|ref|YP_003902436.1| - 0.15 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Penicillin-binding Protein dimerisation domain Aldolase_II PF00596.16 gi|307596120|ref|YP_003902437.1| - 1.9e-46 158.0 0.0 2.2e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Amidohydro_2 PF04909.9 gi|307596121|ref|YP_003902438.1| - 6.3e-39 134.1 0.4 7.4e-39 133.9 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase TM_helix PF05552.7 gi|307596123|ref|YP_003902440.1| - 6.2e-14 51.4 15.0 1.5e-09 37.4 4.0 4.9 5 1 1 6 6 6 2 Conserved TM helix SNARE_assoc PF09335.6 gi|307596124|ref|YP_003902441.1| - 0.00013 22.1 3.4 0.00013 22.1 2.4 2.4 1 1 2 3 3 3 1 SNARE associated Golgi protein DUF1049 PF06305.6 gi|307596124|ref|YP_003902441.1| - 4.3 6.8 7.5 0.96 8.9 0.2 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1049) Lon_C PF05362.8 gi|307596125|ref|YP_003902442.1| - 9.5e-11 41.3 0.1 1.6e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF2808 PF10989.3 gi|307596125|ref|YP_003902442.1| - 0.0061 16.1 0.9 0.0097 15.5 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2808) MscS_porin PF12795.2 gi|307596125|ref|YP_003902442.1| - 0.0062 15.8 3.1 0.0062 15.8 2.1 2.0 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain ChlI PF13541.1 gi|307596125|ref|YP_003902442.1| - 0.027 13.9 0.0 0.087 12.3 0.0 1.9 2 0 0 2 2 2 0 Subunit ChlI of Mg-chelatase HR1 PF02185.11 gi|307596125|ref|YP_003902442.1| - 0.029 14.1 0.1 0.92 9.2 0.0 2.4 2 0 0 2 2 2 0 Hr1 repeat Sel1 PF08238.7 gi|307596125|ref|YP_003902442.1| - 0.21 12.2 3.8 1.5 9.5 1.0 3.1 3 0 0 3 3 3 0 Sel1 repeat OTCace PF00185.19 gi|307596126|ref|YP_003902443.1| - 2e-56 190.2 0.1 5.3e-54 182.3 0.0 2.1 2 0 0 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|307596126|ref|YP_003902443.1| - 3.2e-47 159.7 0.0 4.7e-47 159.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TP6A_N PF04406.9 gi|307596127|ref|YP_003902444.1| - 2.1e-23 81.7 0.1 4.1e-23 80.8 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|307596127|ref|YP_003902444.1| - 0.071 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Radical_SAM PF04055.16 gi|307596128|ref|YP_003902445.1| - 1.8e-26 93.3 0.0 2.4e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|307596128|ref|YP_003902445.1| - 2.9e-23 81.9 0.0 5.2e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|307596128|ref|YP_003902445.1| - 4.9e-07 29.9 0.0 9.5e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|307596128|ref|YP_003902445.1| - 6e-07 29.5 0.0 1.4e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2024 PF09630.5 gi|307596128|ref|YP_003902445.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2024) QueF PF14489.1 gi|307596129|ref|YP_003902446.1| - 1.4e-07 31.3 0.0 1.8e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 QueF-like protein TrbL PF04610.9 gi|307596130|ref|YP_003902447.1| - 0.044 13.4 3.3 0.062 12.9 2.3 1.1 1 0 0 1 1 1 0 TrbL/VirB6 plasmid conjugal transfer protein SyrA PF11089.3 gi|307596130|ref|YP_003902447.1| - 0.055 13.2 0.4 0.12 12.1 0.3 1.6 1 0 0 1 1 1 0 Exopolysaccharide production repressor NAD_synthase PF02540.12 gi|307596131|ref|YP_003902448.1| - 3.4e-79 265.1 0.0 4e-79 264.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|307596131|ref|YP_003902448.1| - 1.2e-09 37.1 0.0 1.1e-07 30.7 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|307596131|ref|YP_003902448.1| - 0.00053 19.3 0.0 0.0011 18.2 0.0 1.5 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|307596131|ref|YP_003902448.1| - 0.00071 19.1 0.0 0.00097 18.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|307596131|ref|YP_003902448.1| - 0.16 11.4 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CN_hydrolase PF00795.17 gi|307596132|ref|YP_003902449.1| - 2.9e-29 101.7 0.0 3.7e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Iso_dh PF00180.15 gi|307596133|ref|YP_003902450.1| - 1.6e-104 349.6 0.0 1.8e-104 349.4 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TP_methylase PF00590.15 gi|307596134|ref|YP_003902451.1| - 6.6e-27 94.5 0.1 8e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases UPRTase PF14681.1 gi|307596134|ref|YP_003902451.1| - 0.00089 18.5 0.0 0.0014 17.8 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF504 PF04457.7 gi|307596135|ref|YP_003902452.1| - 4.8e-16 58.6 1.4 6.1e-16 58.3 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF504) 2-Hacid_dh_C PF02826.14 gi|307596136|ref|YP_003902453.1| - 1e-64 216.9 0.0 1.3e-64 216.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|307596136|ref|YP_003902453.1| - 3.6e-28 97.6 0.0 4.4e-28 97.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|307596136|ref|YP_003902453.1| - 2.5e-09 37.1 0.0 7.4e-09 35.6 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|307596136|ref|YP_003902453.1| - 4.3e-05 23.8 0.0 0.0001 22.6 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|307596136|ref|YP_003902453.1| - 0.0029 17.3 0.1 0.017 14.8 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|307596136|ref|YP_003902453.1| - 0.033 14.5 0.0 0.071 13.4 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain AdoHcyase_NAD PF00670.16 gi|307596136|ref|YP_003902453.1| - 0.033 14.0 0.1 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NUDIX PF00293.23 gi|307596137|ref|YP_003902454.1| - 6.5e-14 51.7 0.0 8.7e-14 51.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DBC1 PF14443.1 gi|307596137|ref|YP_003902454.1| - 0.024 14.1 0.0 0.054 13.0 0.0 1.5 1 0 0 1 1 1 0 DBC1 Cyclase PF04199.8 gi|307596138|ref|YP_003902455.1| - 3e-32 111.6 0.0 3.9e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase ADH_N PF08240.7 gi|307596140|ref|YP_003902457.1| - 1.3e-13 50.6 0.1 2.4e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain Shikimate_DH PF01488.15 gi|307596140|ref|YP_003902457.1| - 8.9e-07 29.0 0.0 1.8e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ADH_zinc_N PF00107.21 gi|307596140|ref|YP_003902457.1| - 1.4e-06 27.8 0.1 2.7e-06 26.9 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Gp_dh_N PF00044.19 gi|307596140|ref|YP_003902457.1| - 0.091 12.7 0.2 0.58 10.1 0.0 2.1 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|307596140|ref|YP_003902457.1| - 0.12 12.4 0.1 0.19 11.7 0.1 1.3 1 0 0 1 1 1 0 NADH(P)-binding DapB_N PF01113.15 gi|307596140|ref|YP_003902457.1| - 0.12 12.3 0.1 0.22 11.4 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NDK PF00334.14 gi|307596141|ref|YP_003902458.1| - 2.5e-44 150.3 0.0 6.3e-23 81.0 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase Aminotran_3 PF00202.16 gi|307596142|ref|YP_003902459.1| - 4.6e-64 216.4 0.0 6.3e-64 215.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|307596142|ref|YP_003902459.1| - 0.00059 18.8 0.0 0.00072 18.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II GlutR_N PF05201.10 gi|307596143|ref|YP_003902460.1| - 9.2e-24 83.7 0.0 5.1e-23 81.3 0.0 2.1 2 1 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|307596143|ref|YP_003902460.1| - 5e-17 61.7 4.7 1e-16 60.6 3.3 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Shikimate_DH PF01488.15 gi|307596143|ref|YP_003902460.1| - 1.7e-15 57.3 0.2 1.2e-14 54.5 0.0 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|307596143|ref|YP_003902460.1| - 0.00024 20.2 0.0 0.00039 19.5 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|307596143|ref|YP_003902460.1| - 0.00032 20.8 0.3 0.0011 19.2 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|307596143|ref|YP_003902460.1| - 0.0012 19.1 0.1 0.013 15.9 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|307596143|ref|YP_003902460.1| - 0.0045 16.9 0.4 0.026 14.5 0.2 2.4 1 1 0 1 1 1 1 TrkA-N domain Pyr_redox_3 PF13738.1 gi|307596143|ref|YP_003902460.1| - 0.078 13.0 0.0 0.23 11.5 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase EntA_Immun PF08951.5 gi|307596143|ref|YP_003902460.1| - 0.15 12.2 1.4 1.9 8.6 0.1 3.2 4 0 0 4 4 4 0 Enterocin A Immunity Peptidase_M20 PF01546.23 gi|307596144|ref|YP_003902461.1| - 3.8e-25 88.5 0.0 4.6e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|307596144|ref|YP_003902461.1| - 1.5e-18 66.5 0.0 2.6e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|307596144|ref|YP_003902461.1| - 0.07 12.8 0.0 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 Peptidase family M28 THUMP PF02926.12 gi|307596145|ref|YP_003902462.1| - 3.5e-15 56.1 0.0 5.6e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Ribosomal_L15e PF00827.12 gi|307596147|ref|YP_003902464.1| - 3.3e-62 209.4 7.0 3.6e-62 209.3 4.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.12 gi|307596148|ref|YP_003902465.1| - 2.7e-23 82.2 0.0 3.1e-23 82.0 0.0 1.0 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.11 gi|307596149|ref|YP_003902466.1| - 5e-16 58.2 0.5 6.5e-16 57.9 0.3 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Peptidase_C47 PF05543.8 gi|307596149|ref|YP_003902466.1| - 0.065 12.6 0.1 0.096 12.0 0.0 1.2 1 0 0 1 1 1 0 Staphopain peptidase C47 RNase_P_Rpp14 PF01900.14 gi|307596150|ref|YP_003902467.1| - 0.015 15.1 0.2 0.023 14.6 0.2 1.5 1 1 0 1 1 1 0 Rpp14/Pop5 family TSGA13 PF14994.1 gi|307596150|ref|YP_003902467.1| - 0.1 11.7 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Testis-specific gene 13 protein Flavin_Reduct PF01613.13 gi|307596151|ref|YP_003902468.1| - 6.2e-41 139.8 0.0 7e-41 139.6 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|307596151|ref|YP_003902468.1| - 0.048 13.2 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF447) ABC_tran PF00005.22 gi|307596152|ref|YP_003902469.1| - 7.2e-31 107.3 0.0 9.4e-31 106.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|307596152|ref|YP_003902469.1| - 1.3e-20 73.4 0.9 2.3e-20 72.6 0.6 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|307596152|ref|YP_003902469.1| - 5.8e-08 33.0 0.5 0.0005 20.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|307596152|ref|YP_003902469.1| - 8e-05 22.7 0.4 0.00062 19.9 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|307596152|ref|YP_003902469.1| - 0.0049 17.1 0.0 0.0088 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|307596152|ref|YP_003902469.1| - 0.0051 16.0 0.1 0.14 11.3 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|307596152|ref|YP_003902469.1| - 0.011 15.4 0.1 0.022 14.4 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|307596152|ref|YP_003902469.1| - 0.011 15.2 0.1 0.019 14.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|307596152|ref|YP_003902469.1| - 0.011 15.6 0.1 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|307596152|ref|YP_003902469.1| - 0.018 14.5 0.1 0.033 13.6 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family KaiC PF06745.8 gi|307596152|ref|YP_003902469.1| - 0.02 14.0 0.1 0.033 13.3 0.1 1.3 1 0 0 1 1 1 0 KaiC NACHT PF05729.7 gi|307596152|ref|YP_003902469.1| - 0.035 13.7 0.1 0.064 12.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|307596152|ref|YP_003902469.1| - 0.038 14.8 0.0 0.068 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|307596152|ref|YP_003902469.1| - 0.038 12.4 1.1 0.67 8.3 0.5 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|307596152|ref|YP_003902469.1| - 0.041 13.0 0.0 0.076 12.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|307596152|ref|YP_003902469.1| - 0.053 13.0 0.0 0.082 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Septin PF00735.13 gi|307596152|ref|YP_003902469.1| - 0.11 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Septin DUF87 PF01935.12 gi|307596152|ref|YP_003902469.1| - 0.12 12.1 0.1 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 Fe_bilin_red PF05996.7 gi|307596152|ref|YP_003902469.1| - 0.15 11.5 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Ferredoxin-dependent bilin reductase NTPase_1 PF03266.10 gi|307596152|ref|YP_003902469.1| - 0.17 11.5 0.1 0.38 10.4 0.1 1.6 1 0 0 1 1 1 0 NTPase DUF3987 PF13148.1 gi|307596152|ref|YP_003902469.1| - 0.2 10.1 0.0 0.31 9.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) ABC_tran PF00005.22 gi|307596153|ref|YP_003902470.1| - 2.7e-32 111.9 0.0 3.7e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|307596153|ref|YP_003902470.1| - 9.2e-20 70.7 0.1 1.5e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|307596153|ref|YP_003902470.1| - 1.4e-11 44.8 0.1 6.5e-08 32.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|307596153|ref|YP_003902470.1| - 6.2e-05 22.3 0.1 0.011 14.9 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|307596153|ref|YP_003902470.1| - 6.2e-05 23.0 0.0 8.6e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|307596153|ref|YP_003902470.1| - 0.00016 21.8 0.3 0.0019 18.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|307596153|ref|YP_003902470.1| - 0.0003 20.0 0.0 0.0005 19.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|307596153|ref|YP_003902470.1| - 0.00041 19.8 0.1 0.00085 18.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|307596153|ref|YP_003902470.1| - 0.00055 19.3 0.0 0.0014 18.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|307596153|ref|YP_003902470.1| - 0.00075 20.3 0.0 0.0015 19.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|307596153|ref|YP_003902470.1| - 0.0011 18.6 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_10 PF12846.2 gi|307596153|ref|YP_003902470.1| - 0.0011 18.4 0.2 0.0053 16.2 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain DUF87 PF01935.12 gi|307596153|ref|YP_003902470.1| - 0.0024 17.7 0.0 0.0053 16.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 Sigma54_activ_2 PF14532.1 gi|307596153|ref|YP_003902470.1| - 0.0034 17.4 0.0 0.11 12.5 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|307596153|ref|YP_003902470.1| - 0.0047 17.2 0.0 0.009 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|307596153|ref|YP_003902470.1| - 0.0063 16.2 0.0 0.063 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|307596153|ref|YP_003902470.1| - 0.0076 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|307596153|ref|YP_003902470.1| - 0.011 14.7 0.1 0.62 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.17 gi|307596153|ref|YP_003902470.1| - 0.013 15.6 0.0 0.037 14.2 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_13 PF13166.1 gi|307596153|ref|YP_003902470.1| - 0.018 13.5 0.0 1.2 7.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|307596153|ref|YP_003902470.1| - 0.026 14.0 0.0 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|307596153|ref|YP_003902470.1| - 0.031 13.7 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family SbcCD_C PF13558.1 gi|307596153|ref|YP_003902470.1| - 0.033 14.1 0.0 0.12 12.3 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit APS_kinase PF01583.15 gi|307596153|ref|YP_003902470.1| - 0.045 13.4 0.0 0.21 11.2 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_33 PF13671.1 gi|307596153|ref|YP_003902470.1| - 0.053 13.4 0.0 0.11 12.3 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA PF00004.24 gi|307596153|ref|YP_003902470.1| - 0.094 12.9 0.1 0.56 10.3 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|307596153|ref|YP_003902470.1| - 0.097 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.12 gi|307596153|ref|YP_003902470.1| - 0.11 11.8 0.1 0.93 8.8 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|307596153|ref|YP_003902470.1| - 0.13 11.6 0.1 0.34 10.3 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_ATPase PF09818.4 gi|307596153|ref|YP_003902470.1| - 0.14 10.7 0.0 0.97 7.9 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class UPF0150 PF03681.10 gi|307596153|ref|YP_003902470.1| - 0.14 11.7 0.1 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) Zeta_toxin PF06414.7 gi|307596153|ref|YP_003902470.1| - 0.15 11.0 0.0 0.32 10.0 0.0 1.7 1 1 0 1 1 1 0 Zeta toxin BPD_transp_1 PF00528.17 gi|307596154|ref|YP_003902471.1| - 6.7e-24 84.4 26.7 1.2e-23 83.5 15.7 2.4 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|307596155|ref|YP_003902472.1| - 1.3e-28 99.7 17.0 1.3e-28 99.7 11.8 2.6 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|307596156|ref|YP_003902473.1| - 2.9e-13 49.4 16.4 2.1e-11 43.2 0.9 3.5 2 1 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Mito_fiss_reg PF05308.6 gi|307596156|ref|YP_003902473.1| - 0.16 11.3 7.5 0.25 10.6 5.2 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator Herpes_gE PF02480.11 gi|307596156|ref|YP_003902473.1| - 0.44 8.7 3.6 0.19 9.9 0.4 1.8 2 0 0 2 2 2 0 Alphaherpesvirus glycoprotein E Ribosomal_L39 PF00832.15 gi|307596158|ref|YP_003902475.1| - 3.5e-19 67.9 6.9 4.3e-19 67.6 4.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.15 gi|307596159|ref|YP_003902476.1| - 4.6e-28 97.3 13.2 5.9e-28 96.9 9.1 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Mnd1 PF03962.10 gi|307596159|ref|YP_003902476.1| - 0.3 10.7 4.2 0.4 10.3 2.9 1.1 1 0 0 1 1 1 0 Mnd1 family Caps_synth_GfcC PF06251.6 gi|307596159|ref|YP_003902476.1| - 0.36 9.9 2.1 0.45 9.6 1.5 1.2 1 0 0 1 1 1 0 Capsule biosynthesis GfcC K-box PF01486.12 gi|307596159|ref|YP_003902476.1| - 0.63 9.8 6.8 0.19 11.5 2.6 1.6 2 0 0 2 2 2 0 K-box region AAA_28 PF13521.1 gi|307596159|ref|YP_003902476.1| - 0.9 9.4 3.7 8 6.3 1.2 2.0 1 1 1 2 2 2 0 AAA domain DUF4011 PF13195.1 gi|307596159|ref|YP_003902476.1| - 0.95 9.4 5.0 1.8 8.5 3.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4011) DUF3135 PF11333.3 gi|307596159|ref|YP_003902476.1| - 1.1 9.4 4.5 2.8 8.1 1.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3135) P120R PF08062.6 gi|307596159|ref|YP_003902476.1| - 1.2 9.4 7.3 11 6.4 1.1 2.5 2 0 0 2 2 2 0 P120R (NUC006) repeat Troponin PF00992.15 gi|307596159|ref|YP_003902476.1| - 2.8 8.0 10.6 9.7 6.2 7.4 1.9 1 1 0 1 1 1 0 Troponin Ribosomal_S19e PF01090.14 gi|307596160|ref|YP_003902477.1| - 4.9e-52 175.0 0.0 5.7e-52 174.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|307596160|ref|YP_003902477.1| - 0.00049 19.6 0.0 0.032 13.8 0.0 2.3 1 1 1 2 2 2 2 Holliday junction DNA helicase ruvB C-terminus HTH_45 PF14947.1 gi|307596160|ref|YP_003902477.1| - 0.0029 17.3 0.0 0.0064 16.2 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix TFIIS_C PF01096.13 gi|307596161|ref|YP_003902478.1| - 2.4e-20 71.8 13.9 1.2e-19 69.6 3.0 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|307596161|ref|YP_003902478.1| - 3.8e-10 39.2 6.2 4.2e-08 32.7 0.1 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit UPF0547 PF10571.4 gi|307596161|ref|YP_003902478.1| - 1.5e-07 31.0 10.0 0.27 10.9 0.0 4.2 4 0 0 4 4 4 3 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|307596161|ref|YP_003902478.1| - 4.2e-07 29.5 6.5 0.003 17.1 0.6 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|307596161|ref|YP_003902478.1| - 4.8e-07 29.6 5.1 0.00095 19.0 0.2 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|307596161|ref|YP_003902478.1| - 5.7e-07 29.2 10.2 0.00081 19.1 1.4 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|307596161|ref|YP_003902478.1| - 2.3e-06 27.2 3.7 0.00078 19.1 0.0 2.6 2 1 0 2 2 2 2 PhnA Zinc-Ribbon DZR PF12773.2 gi|307596161|ref|YP_003902478.1| - 6.8e-06 25.8 7.0 0.011 15.5 0.4 2.4 2 1 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|307596161|ref|YP_003902478.1| - 9.9e-06 24.5 11.2 0.19 10.9 0.2 4.1 4 0 0 4 4 4 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|307596161|ref|YP_003902478.1| - 2.7e-05 23.4 6.9 0.0083 15.4 0.3 3.0 2 1 0 2 2 2 2 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|307596161|ref|YP_003902478.1| - 7.6e-05 21.8 0.6 7.6e-05 21.8 0.4 2.9 2 1 0 2 2 2 1 Transcription factor zinc-finger IBR PF01485.16 gi|307596161|ref|YP_003902478.1| - 0.0024 17.7 9.9 0.0063 16.3 0.8 2.9 2 1 0 2 2 2 1 IBR domain Elf1 PF05129.8 gi|307596161|ref|YP_003902478.1| - 0.0065 16.1 7.0 0.13 11.9 0.3 2.9 2 1 0 2 2 2 1 Transcription elongation factor Elf1 like Ribosomal_L37ae PF01780.14 gi|307596161|ref|YP_003902478.1| - 0.011 15.5 0.4 0.011 15.5 0.3 2.5 2 1 0 2 2 2 0 Ribosomal L37ae protein family DNA_ligase_ZBD PF03119.11 gi|307596161|ref|YP_003902478.1| - 0.014 15.1 5.7 0.062 13.0 0.4 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|307596161|ref|YP_003902478.1| - 0.015 15.3 13.7 2.4 8.2 0.1 3.7 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|307596161|ref|YP_003902478.1| - 0.021 14.3 12.2 3.4 7.3 2.2 3.8 3 1 0 3 3 3 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|307596161|ref|YP_003902478.1| - 0.022 14.2 10.0 0.075 12.5 0.3 3.2 3 1 0 3 3 3 0 A2L zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|307596161|ref|YP_003902478.1| - 0.024 14.8 0.5 0.024 14.8 0.4 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Lar_restr_allev PF14354.1 gi|307596161|ref|YP_003902478.1| - 0.026 14.8 10.1 1.4 9.2 1.6 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar Ribosomal_L37e PF01907.14 gi|307596161|ref|YP_003902478.1| - 0.039 13.7 7.1 0.34 10.7 0.0 3.3 3 1 0 3 3 3 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.1 gi|307596161|ref|YP_003902478.1| - 0.054 12.9 20.2 0.31 10.5 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|307596161|ref|YP_003902478.1| - 0.059 13.0 13.5 3 7.5 2.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|307596161|ref|YP_003902478.1| - 0.07 13.0 16.5 0.47 10.3 0.3 4.2 4 0 0 4 4 4 0 Rubredoxin Auto_anti-p27 PF06677.7 gi|307596161|ref|YP_003902478.1| - 0.072 12.8 13.5 0.12 12.2 2.9 3.3 3 1 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2296 PF10058.4 gi|307596161|ref|YP_003902478.1| - 0.076 12.7 9.0 0.33 10.7 0.8 3.2 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Nudix_N_2 PF14803.1 gi|307596161|ref|YP_003902478.1| - 0.097 12.3 11.1 3.4 7.4 0.1 3.7 3 1 0 3 3 3 0 Nudix N-terminal Terminase_GpA PF05876.7 gi|307596161|ref|YP_003902478.1| - 0.15 10.3 7.5 0.19 10.0 1.2 2.1 1 1 2 3 3 3 0 Phage terminase large subunit (GpA) Zn-ribbon_8 PF09723.5 gi|307596161|ref|YP_003902478.1| - 0.16 11.9 15.3 4.7 7.2 2.7 4.0 3 1 0 3 3 3 0 Zinc ribbon domain Cys_rich_CPCC PF14206.1 gi|307596161|ref|YP_003902478.1| - 0.2 11.2 6.1 2.3 7.8 0.2 3.1 3 0 0 3 3 3 0 Cysteine-rich CPCC HypA PF01155.14 gi|307596161|ref|YP_003902478.1| - 0.2 11.3 8.0 0.33 10.6 0.5 2.6 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|307596161|ref|YP_003902478.1| - 0.26 10.8 10.1 0.57 9.7 0.2 3.0 2 2 1 3 3 3 0 Transposase zinc-binding domain YhfH PF14149.1 gi|307596161|ref|YP_003902478.1| - 0.42 10.4 7.4 2.7 7.8 0.1 3.7 4 0 0 4 4 4 0 YhfH-like protein DUF4379 PF14311.1 gi|307596161|ref|YP_003902478.1| - 0.48 10.2 15.6 0.072 12.9 1.7 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4379) Baculo_LEF5_C PF11792.3 gi|307596161|ref|YP_003902478.1| - 0.49 9.8 0.0 0.49 9.8 0.0 3.4 4 0 0 4 4 4 0 Baculoviridae late expression factor 5 C-terminal domain zf-C4_Topoisom PF01396.14 gi|307596161|ref|YP_003902478.1| - 0.53 9.8 15.0 2.2 7.8 0.1 3.7 4 0 0 4 4 3 0 Topoisomerase DNA binding C4 zinc finger RNHCP PF12647.2 gi|307596161|ref|YP_003902478.1| - 0.56 10.0 6.8 0.46 10.3 1.6 2.7 1 1 1 2 2 2 0 RNHCP domain zf-RING_3 PF14369.1 gi|307596161|ref|YP_003902478.1| - 0.79 9.7 8.8 29 4.7 0.0 3.8 3 1 1 4 4 4 0 zinc-finger zf-tcix PF14952.1 gi|307596161|ref|YP_003902478.1| - 0.89 8.9 14.7 2.4 7.5 0.2 4.1 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding FdhE PF04216.7 gi|307596161|ref|YP_003902478.1| - 1 9.0 5.5 0.28 10.8 0.3 2.0 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation DUF2082 PF09855.4 gi|307596161|ref|YP_003902478.1| - 1.1 9.0 11.5 3.7 7.4 0.1 3.7 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) GFA PF04828.9 gi|307596161|ref|YP_003902478.1| - 1.3 9.0 8.7 9.6 6.2 0.1 3.3 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zf-Mss51 PF13824.1 gi|307596161|ref|YP_003902478.1| - 1.3 8.9 10.4 2.6 7.9 0.5 3.0 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Ogr_Delta PF04606.7 gi|307596161|ref|YP_003902478.1| - 1.3 8.7 11.9 2 8.1 0.0 3.7 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger PolC_DP2 PF03833.8 gi|307596161|ref|YP_003902478.1| - 1.8 6.1 3.9 1.3 6.6 0.1 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Opy2 PF09463.5 gi|307596161|ref|YP_003902478.1| - 1.8 8.7 8.8 13 5.9 0.0 3.7 4 0 0 4 4 3 0 Opy2 protein Mu-like_Com PF10122.4 gi|307596161|ref|YP_003902478.1| - 2.2 7.4 7.6 13 4.9 0.1 3.9 4 0 0 4 4 4 0 Mu-like prophage protein Com RecR PF02132.10 gi|307596161|ref|YP_003902478.1| - 2.5 7.6 7.3 10 5.6 0.0 3.7 4 0 0 4 4 4 0 RecR protein DUF2072 PF09845.4 gi|307596161|ref|YP_003902478.1| - 2.6 7.9 7.8 2.5 8.0 0.1 2.8 1 1 2 3 3 3 0 Zn-ribbon containing protein (DUF2072) zf-C2H2_4 PF13894.1 gi|307596161|ref|YP_003902478.1| - 3.1 8.3 9.1 17 6.0 0.0 3.9 4 0 0 4 4 4 0 C2H2-type zinc finger zf-CSL PF05207.8 gi|307596161|ref|YP_003902478.1| - 4.3 6.9 11.3 2.3 7.7 0.2 3.0 2 1 0 2 2 2 0 CSL zinc finger C1_1 PF00130.17 gi|307596161|ref|YP_003902478.1| - 4.7 7.0 10.6 0.37 10.5 0.9 2.7 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_RNApol_7kD PF03604.8 gi|307596161|ref|YP_003902478.1| - 5.5 6.5 12.9 1.1 8.7 0.4 3.4 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-CHY PF05495.7 gi|307596161|ref|YP_003902478.1| - 6.2 7.0 7.8 8 6.7 0.5 2.7 1 1 1 2 2 2 0 CHY zinc finger DUF329 PF03884.9 gi|307596161|ref|YP_003902478.1| - 7 6.2 10.0 34 4.0 0.2 3.6 3 1 1 4 4 3 0 Domain of unknown function (DUF329) C1_4 PF07975.7 gi|307596161|ref|YP_003902478.1| - 9.6 6.3 8.9 14 5.7 0.6 3.2 2 2 1 3 3 3 0 TFIIH C1-like domain zf-HIT PF04438.11 gi|307596161|ref|YP_003902478.1| - 9.7 5.9 17.2 16 5.2 0.6 4.0 4 0 0 4 4 4 0 HIT zinc finger PCNA_N PF00705.13 gi|307596162|ref|YP_003902479.1| - 3.8e-13 49.0 0.1 3.3e-11 42.7 0.0 2.3 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|307596162|ref|YP_003902479.1| - 1.1e-10 41.4 1.0 3.8e-09 36.5 0.3 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|307596162|ref|YP_003902479.1| - 1.1e-06 27.6 0.0 0.0013 17.5 0.0 2.1 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|307596162|ref|YP_003902479.1| - 0.0028 16.8 0.0 0.0054 15.8 0.0 1.6 1 1 0 1 1 1 1 Rad9 DUF4349 PF14257.1 gi|307596162|ref|YP_003902479.1| - 0.057 12.6 0.0 1.6 7.8 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4349) DNA_primase_S PF01896.14 gi|307596163|ref|YP_003902480.1| - 5.7e-25 87.8 0.0 9.4e-25 87.1 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Ribosomal_L44 PF00935.14 gi|307596165|ref|YP_003902482.1| - 1.1e-26 92.6 6.9 1.6e-26 92.0 4.8 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 zinc_ribbon_5 PF13719.1 gi|307596165|ref|YP_003902482.1| - 0.0048 16.4 1.2 1.6 8.3 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|307596165|ref|YP_003902482.1| - 0.0053 16.4 1.4 1.7 8.3 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|307596165|ref|YP_003902482.1| - 0.01 15.5 0.8 0.13 11.9 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.1 gi|307596165|ref|YP_003902482.1| - 0.013 15.7 0.9 0.59 10.4 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.12 gi|307596165|ref|YP_003902482.1| - 0.014 14.9 0.8 3.2 7.3 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein S27 zf-ISL3 PF14690.1 gi|307596165|ref|YP_003902482.1| - 0.017 15.1 2.1 0.22 11.5 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|307596165|ref|YP_003902482.1| - 0.026 13.7 1.4 1 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Yippee-Mis18 PF03226.9 gi|307596165|ref|YP_003902482.1| - 0.027 14.5 0.2 0.037 14.0 0.1 1.2 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Elf1 PF05129.8 gi|307596165|ref|YP_003902482.1| - 0.032 13.9 1.5 3.1 7.5 0.3 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Zn_Tnp_IS1 PF03811.8 gi|307596165|ref|YP_003902482.1| - 0.048 13.1 1.2 0.048 13.1 0.9 2.2 2 1 0 2 2 2 0 InsA N-terminal domain Rubredoxin PF00301.15 gi|307596165|ref|YP_003902482.1| - 0.05 13.4 1.0 2.7 7.9 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|307596165|ref|YP_003902482.1| - 0.076 12.0 1.8 3.3 6.8 0.0 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com RecR PF02132.10 gi|307596165|ref|YP_003902482.1| - 0.092 12.1 2.1 1.1 8.7 0.1 2.3 2 0 0 2 2 2 0 RecR protein Auto_anti-p27 PF06677.7 gi|307596165|ref|YP_003902482.1| - 0.12 12.1 2.5 3.7 7.3 0.0 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.1 gi|307596165|ref|YP_003902482.1| - 0.25 10.8 1.3 15 5.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|307596165|ref|YP_003902482.1| - 0.33 10.6 0.1 0.33 10.6 0.1 2.1 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ribosomal_L33 PF00471.15 gi|307596165|ref|YP_003902482.1| - 0.35 11.1 7.0 1 9.6 0.3 2.9 2 2 1 3 3 3 0 Ribosomal protein L33 DZR PF12773.2 gi|307596165|ref|YP_003902482.1| - 0.59 9.9 3.1 12 5.7 2.3 2.1 1 1 1 2 2 2 0 Double zinc ribbon Rpr2 PF04032.11 gi|307596165|ref|YP_003902482.1| - 2.1 8.2 4.9 5.8 6.8 3.4 1.7 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Ribosomal_S27e PF01667.12 gi|307596166|ref|YP_003902483.1| - 1.3e-21 75.9 0.6 1.5e-21 75.6 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|307596166|ref|YP_003902483.1| - 0.00054 19.2 1.3 0.00071 18.8 0.9 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|307596166|ref|YP_003902483.1| - 0.0008 18.5 0.9 0.18 11.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|307596166|ref|YP_003902483.1| - 0.012 15.2 0.7 0.35 10.5 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-BED PF02892.10 gi|307596166|ref|YP_003902483.1| - 0.037 13.7 0.2 6.8 6.5 0.0 2.1 2 0 0 2 2 2 0 BED zinc finger HypA PF01155.14 gi|307596166|ref|YP_003902483.1| - 0.066 12.9 0.1 0.073 12.7 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Rpr2 PF04032.11 gi|307596166|ref|YP_003902483.1| - 0.094 12.5 0.2 7.1 6.5 0.0 2.1 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_4 PF13717.1 gi|307596166|ref|YP_003902483.1| - 0.16 11.6 4.6 2 8.2 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|307596166|ref|YP_003902483.1| - 0.16 11.5 4.8 1.5 8.4 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|307596166|ref|YP_003902483.1| - 0.19 11.3 2.8 1.9 8.1 0.2 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Desulfoferrod_N PF06397.7 gi|307596166|ref|YP_003902483.1| - 0.19 11.1 10.2 0.61 9.5 0.6 2.3 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-RanBP PF00641.13 gi|307596166|ref|YP_003902483.1| - 0.23 10.5 2.1 4.1 6.5 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF3797 PF12677.2 gi|307596166|ref|YP_003902483.1| - 0.3 10.7 7.3 0.74 9.4 1.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DNA_RNApol_7kD PF03604.8 gi|307596166|ref|YP_003902483.1| - 0.35 10.3 5.4 2.1 7.8 0.6 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|307596166|ref|YP_003902483.1| - 1 8.9 4.0 11 5.7 2.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain RecR PF02132.10 gi|307596166|ref|YP_003902483.1| - 4.7 6.7 6.1 4.7 6.7 0.1 2.1 2 0 0 2 2 2 0 RecR protein EIF_2_alpha PF07541.7 gi|307596167|ref|YP_003902484.1| - 6.4e-26 90.3 0.0 1.3e-25 89.3 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|307596167|ref|YP_003902484.1| - 8.5e-07 28.9 2.4 2.6e-06 27.4 0.0 2.6 3 0 0 3 3 3 1 S1 RNA binding domain Nop10p PF04135.7 gi|307596168|ref|YP_003902485.1| - 3.7e-24 84.2 1.8 4.3e-24 84.0 1.2 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.3 gi|307596168|ref|YP_003902485.1| - 0.0036 17.1 0.8 0.0072 16.2 0.6 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|307596168|ref|YP_003902485.1| - 0.0052 15.9 4.9 0.021 14.0 3.4 1.9 1 1 0 1 1 1 1 zinc-ribbon domain DUF1272 PF06906.6 gi|307596168|ref|YP_003902485.1| - 0.013 15.3 1.9 0.02 14.7 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) A2L_zn_ribbon PF08792.5 gi|307596168|ref|YP_003902485.1| - 0.013 14.8 1.3 3.8 7.0 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|307596168|ref|YP_003902485.1| - 0.018 14.8 0.5 0.027 14.3 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|307596168|ref|YP_003902485.1| - 0.034 13.6 5.4 0.48 9.9 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|307596168|ref|YP_003902485.1| - 0.038 14.1 0.7 0.072 13.2 0.5 1.5 1 0 0 1 1 1 0 Ribosomal L32p protein family NRDD PF13597.1 gi|307596168|ref|YP_003902485.1| - 0.058 11.4 0.5 0.064 11.3 0.4 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-FCS PF06467.9 gi|307596168|ref|YP_003902485.1| - 0.059 13.0 3.2 1.1 8.9 0.1 2.3 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif zf-C3HC4_3 PF13920.1 gi|307596168|ref|YP_003902485.1| - 0.096 12.3 1.3 0.14 11.8 0.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RecR PF02132.10 gi|307596168|ref|YP_003902485.1| - 0.15 11.5 0.7 0.22 10.9 0.5 1.3 1 0 0 1 1 1 0 RecR protein zf-IS66 PF13005.2 gi|307596168|ref|YP_003902485.1| - 0.44 10.5 4.6 0.53 10.3 0.3 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|307596168|ref|YP_003902485.1| - 0.52 10.3 3.6 12 5.9 0.1 2.2 1 1 2 3 3 3 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|307596168|ref|YP_003902485.1| - 0.57 9.5 5.8 5.2 6.4 0.5 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|307596168|ref|YP_003902485.1| - 1.2 9.1 7.4 4.5 7.3 0.5 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 STT3 PF02516.9 gi|307596169|ref|YP_003902486.1| - 1.2e-22 80.6 53.7 2.2e-22 79.7 37.2 1.3 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Aldose_epim PF01263.15 gi|307596170|ref|YP_003902487.1| - 2.6e-38 131.8 0.0 3.2e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 Aldose 1-epimerase PaREP1 PF05942.6 gi|307596174|ref|YP_003902491.1| - 0.00022 21.0 1.0 0.00043 20.1 0.7 1.5 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|307596174|ref|YP_003902491.1| - 0.031 14.1 2.3 0.16 11.8 1.6 2.2 1 1 0 1 1 1 0 HEPN domain HEM4 PF02602.10 gi|307596174|ref|YP_003902491.1| - 0.061 12.5 0.0 0.069 12.3 0.0 1.1 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD DUF4293 PF14126.1 gi|307596175|ref|YP_003902492.1| - 0.035 14.0 7.5 0.053 13.4 5.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) DUF1469 PF07332.6 gi|307596175|ref|YP_003902492.1| - 9.1 6.0 13.0 1.4 8.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) TauE PF01925.14 gi|307596176|ref|YP_003902493.1| - 1.4e-33 116.3 35.3 1.9e-33 115.8 24.5 1.2 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CRT-like PF08627.5 gi|307596176|ref|YP_003902493.1| - 8.1 6.3 6.4 10 6.0 1.6 2.6 2 1 0 2 2 2 0 CRT-like DUF2371 PF10177.4 gi|307596178|ref|YP_003902495.1| - 0.036 13.9 3.4 0.047 13.5 2.3 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) DUF1435 PF07256.7 gi|307596178|ref|YP_003902495.1| - 0.26 11.2 6.7 0.08 12.9 1.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1435) DUF1634 PF07843.6 gi|307596178|ref|YP_003902495.1| - 0.52 9.9 11.5 0.93 9.1 7.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1634) DUF4231 PF14015.1 gi|307596178|ref|YP_003902495.1| - 6.9 6.6 9.1 4.1 7.4 3.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF3784 PF12650.2 gi|307596178|ref|YP_003902495.1| - 7.6 6.5 17.2 8.5 6.3 1.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) TauE PF01925.14 gi|307596179|ref|YP_003902496.1| - 1.8e-38 132.3 33.6 2.3e-38 132.0 23.3 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Acyl_transf_3 PF01757.17 gi|307596179|ref|YP_003902496.1| - 5.1 5.8 35.4 0.037 12.8 9.9 2.9 1 1 2 3 3 3 0 Acyltransferase family TauE PF01925.14 gi|307596180|ref|YP_003902497.1| - 3.5e-38 131.4 31.4 3.5e-38 131.4 21.8 1.8 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE TauE PF01925.14 gi|307596181|ref|YP_003902498.1| - 1.2e-38 132.8 34.2 1.2e-38 132.8 23.7 2.5 2 1 0 2 2 2 1 Sulfite exporter TauE/SafE DUF1634 PF07843.6 gi|307596181|ref|YP_003902498.1| - 2.5e-23 81.6 14.1 2.5e-23 81.6 9.7 3.5 4 1 1 5 5 5 1 Protein of unknown function (DUF1634) Peptidase_M50 PF02163.17 gi|307596181|ref|YP_003902498.1| - 0.01 14.7 0.0 0.39 9.6 0.0 2.9 1 1 0 1 1 1 0 Peptidase family M50 DAGK_acc PF00609.14 gi|307596183|ref|YP_003902500.1| - 0.067 13.3 0.2 0.077 13.1 0.1 1.1 1 0 0 1 1 1 0 Diacylglycerol kinase accessory domain TrmB PF01978.14 gi|307596185|ref|YP_003902502.1| - 2.8e-05 23.7 0.8 0.24 11.1 0.1 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Phage_X PF05155.10 gi|307596185|ref|YP_003902502.1| - 0.024 14.5 0.0 0.045 13.6 0.0 1.4 1 0 0 1 1 1 0 Phage X family FUR PF01475.14 gi|307596185|ref|YP_003902502.1| - 0.15 11.9 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family GATase_3 PF07685.9 gi|307596186|ref|YP_003902503.1| - 8.1e-26 90.5 0.1 1.4e-25 89.7 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|307596186|ref|YP_003902503.1| - 1.8e-19 69.9 0.1 3.1e-19 69.1 0.1 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|307596186|ref|YP_003902503.1| - 1.3e-13 51.0 2.0 8e-10 38.6 0.0 2.4 1 1 0 2 2 2 2 AAA domain VirC1 PF07015.6 gi|307596186|ref|YP_003902503.1| - 0.016 14.2 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein MipZ PF09140.6 gi|307596186|ref|YP_003902503.1| - 0.037 13.1 0.0 0.069 12.2 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ SNO PF01174.14 gi|307596186|ref|YP_003902503.1| - 0.07 12.7 0.0 0.18 11.4 0.0 1.7 2 0 0 2 2 2 0 SNO glutamine amidotransferase family TP_methylase PF00590.15 gi|307596187|ref|YP_003902504.1| - 2e-38 132.2 0.0 2.4e-38 131.9 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF387 PF04079.11 gi|307596188|ref|YP_003902505.1| - 0.0029 16.9 0.1 0.0053 16.1 0.1 1.4 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) TrmB PF01978.14 gi|307596188|ref|YP_003902505.1| - 0.034 13.8 0.1 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Tubulin_3 PF14881.1 gi|307596189|ref|YP_003902506.1| - 0.06 12.8 0.0 0.083 12.3 0.0 1.2 1 0 0 1 1 1 0 Tubulin domain Complex1_LYR_1 PF13232.1 gi|307596189|ref|YP_003902506.1| - 0.084 13.0 1.1 0.17 12.0 0.8 1.5 1 1 0 1 1 1 0 Complex1_LYR-like ATP-sulfurylase PF01747.12 gi|307596191|ref|YP_003902508.1| - 3.9e-80 268.2 0.0 5.2e-80 267.7 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|307596191|ref|YP_003902508.1| - 1.5e-39 134.9 0.0 2.3e-39 134.3 0.0 1.2 1 0 0 1 1 1 1 PUA-like domain FAD_binding_2 PF00890.19 gi|307596192|ref|YP_003902509.1| - 2e-13 49.9 0.0 4.3e-12 45.6 0.0 2.5 2 1 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|307596192|ref|YP_003902509.1| - 9.6e-10 38.4 0.1 2e-09 37.3 0.1 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|307596192|ref|YP_003902509.1| - 3e-05 23.0 1.1 0.0034 16.3 0.2 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|307596192|ref|YP_003902509.1| - 0.016 15.1 0.2 0.095 12.7 0.1 2.4 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|307596192|ref|YP_003902509.1| - 0.035 12.7 0.1 0.051 12.1 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase GIDA PF01134.17 gi|307596192|ref|YP_003902509.1| - 0.037 12.8 0.3 0.26 10.1 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A APS-reductase_C PF12139.3 gi|307596193|ref|YP_003902510.1| - 5.3e-28 96.9 0.1 7.3e-28 96.5 0.0 1.2 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4_7 PF12838.2 gi|307596193|ref|YP_003902510.1| - 1.2e-11 44.7 10.8 2.3e-11 43.8 7.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307596193|ref|YP_003902510.1| - 2.8e-11 42.4 12.8 4.3e-06 26.0 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|307596193|ref|YP_003902510.1| - 5.9e-11 42.4 10.9 1e-10 41.6 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307596193|ref|YP_003902510.1| - 1.1e-08 34.7 9.6 2e-08 33.9 6.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307596193|ref|YP_003902510.1| - 4.7e-08 32.5 13.4 7.2e-06 25.6 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|307596193|ref|YP_003902510.1| - 5.6e-08 32.6 9.7 1e-07 31.8 6.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307596193|ref|YP_003902510.1| - 9.2e-07 29.5 4.0 0.015 16.0 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|307596193|ref|YP_003902510.1| - 4.6e-06 26.2 13.7 0.002 17.9 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|307596193|ref|YP_003902510.1| - 1.4e-05 25.0 13.7 0.00027 21.0 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|307596193|ref|YP_003902510.1| - 3e-05 24.2 17.8 0.022 15.2 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|307596193|ref|YP_003902510.1| - 3.5e-05 24.0 12.3 0.00049 20.3 8.5 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307596193|ref|YP_003902510.1| - 0.00015 22.1 11.1 0.026 14.9 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307596193|ref|YP_003902510.1| - 0.0013 18.5 13.5 0.11 12.3 3.1 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307596193|ref|YP_003902510.1| - 0.019 15.5 9.2 0.52 10.9 6.4 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|307596193|ref|YP_003902510.1| - 0.065 13.6 11.5 0.45 10.9 8.0 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|307596193|ref|YP_003902510.1| - 0.12 12.2 5.6 2.8 7.8 0.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Nitrate_red_gam PF02665.9 gi|307596194|ref|YP_003902511.1| - 0.067 12.5 12.5 0.043 13.1 2.4 2.6 1 1 1 2 2 2 0 Nitrate reductase gamma subunit TrmB PF01978.14 gi|307596195|ref|YP_003902512.1| - 0.037 13.7 1.6 0.058 13.1 0.4 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Apc4_WD40 PF12894.2 gi|307596195|ref|YP_003902512.1| - 0.044 13.3 0.0 0.99 8.9 0.0 2.8 3 0 0 3 3 3 0 Anaphase-promoting complex subunit 4 WD40 domain Fer4_8 PF13183.1 gi|307596196|ref|YP_003902513.1| - 9.6e-12 44.7 2.5 2e-11 43.7 1.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307596196|ref|YP_003902513.1| - 6.9e-10 39.1 17.8 1.4e-07 31.8 5.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307596196|ref|YP_003902513.1| - 9.6e-10 38.6 1.4 3.6e-09 36.8 1.0 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307596196|ref|YP_003902513.1| - 3.9e-09 36.6 2.7 0.00012 22.2 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307596196|ref|YP_003902513.1| - 1.8e-08 34.6 1.3 0.0006 20.1 0.0 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain CCG PF02754.11 gi|307596196|ref|YP_003902513.1| - 2.5e-07 30.5 0.1 3.8e-06 26.8 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.1 gi|307596196|ref|YP_003902513.1| - 2.7e-07 30.2 6.4 2.6e-06 27.1 5.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307596196|ref|YP_003902513.1| - 1.1e-06 28.1 10.4 0.00038 20.2 2.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|307596196|ref|YP_003902513.1| - 3.2e-06 26.7 12.9 0.0052 16.6 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|307596196|ref|YP_003902513.1| - 3.6e-06 26.3 12.7 0.00064 19.2 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|307596196|ref|YP_003902513.1| - 1.1e-05 25.2 11.3 0.015 15.6 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|307596196|ref|YP_003902513.1| - 2.2e-05 25.1 4.1 2.2e-05 25.1 2.8 2.7 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|307596196|ref|YP_003902513.1| - 3.8e-05 23.4 4.6 0.026 14.3 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|307596196|ref|YP_003902513.1| - 0.00077 19.8 16.6 0.037 14.5 3.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|307596196|ref|YP_003902513.1| - 0.0065 17.0 3.4 0.45 11.1 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Nitrate_red_gam PF02665.9 gi|307596197|ref|YP_003902514.1| - 8.2e-30 103.8 23.9 8e-28 97.3 9.2 2.6 2 1 0 2 2 2 2 Nitrate reductase gamma subunit ATP1G1_PLM_MAT8 PF02038.11 gi|307596197|ref|YP_003902514.1| - 5.4 6.1 14.3 5 6.2 0.4 3.3 3 0 0 3 3 3 0 ATP1G1/PLM/MAT8 family Sigma70_r1_1 PF03979.9 gi|307596198|ref|YP_003902515.1| - 0.00055 19.8 0.1 0.00096 19.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70 factor, region 1.1 Pyr_redox_2 PF07992.9 gi|307596199|ref|YP_003902516.1| - 2.4e-11 43.8 0.0 6.4e-11 42.4 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|307596199|ref|YP_003902516.1| - 0.00094 19.5 0.3 2.5 8.5 0.0 3.3 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|307596199|ref|YP_003902516.1| - 0.0039 16.9 0.0 1.1 8.9 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding DUF1641 PF07849.6 gi|307596200|ref|YP_003902517.1| - 2.3e-06 27.1 1.3 4.2e-06 26.2 0.3 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) NIR_SIR PF01077.17 gi|307596201|ref|YP_003902518.1| - 5.7e-22 77.7 0.0 7.9e-22 77.2 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|307596201|ref|YP_003902518.1| - 1e-05 25.0 0.0 1.8e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.2 gi|307596201|ref|YP_003902518.1| - 0.021 15.1 0.3 0.078 13.3 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain NIR_SIR PF01077.17 gi|307596202|ref|YP_003902519.1| - 1.6e-32 112.0 0.0 2.7e-32 111.3 0.0 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|307596202|ref|YP_003902519.1| - 3e-07 29.9 0.0 5.1e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_15 PF13459.1 gi|307596202|ref|YP_003902519.1| - 2.3e-06 28.0 2.3 0.0033 17.9 0.0 3.1 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|307596202|ref|YP_003902519.1| - 1.4e-05 25.3 2.1 4.4e-05 23.7 1.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307596202|ref|YP_003902519.1| - 0.00051 19.7 2.1 0.00055 19.6 0.1 2.1 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307596202|ref|YP_003902519.1| - 0.00088 18.7 10.9 0.019 14.5 3.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|307596202|ref|YP_003902519.1| - 0.0012 18.7 0.4 0.024 14.6 0.0 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307596202|ref|YP_003902519.1| - 0.0062 16.8 9.9 0.026 14.8 0.5 2.7 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|307596202|ref|YP_003902519.1| - 0.0091 15.8 2.1 0.0091 15.8 1.5 2.3 2 0 0 2 2 1 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|307596202|ref|YP_003902519.1| - 0.038 14.2 4.8 0.32 11.2 1.7 2.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307596202|ref|YP_003902519.1| - 0.083 12.7 12.4 0.07 13.0 3.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307596202|ref|YP_003902519.1| - 0.53 10.1 8.4 0.56 10.1 3.4 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain DsrC PF04358.8 gi|307596204|ref|YP_003902521.1| - 3e-36 123.9 0.0 3.4e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein HEPN PF05168.9 gi|307596205|ref|YP_003902522.1| - 1.3e-23 83.1 0.2 1.5e-23 82.9 0.1 1.0 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|307596205|ref|YP_003902522.1| - 0.0098 15.9 0.3 0.16 12.0 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) NTP_transf_2 PF01909.18 gi|307596206|ref|YP_003902523.1| - 1.2e-09 38.4 0.3 1.9e-09 37.7 0.2 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|307596206|ref|YP_003902523.1| - 0.013 15.1 0.0 0.068 12.7 0.0 1.9 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 DUF2529 PF10740.4 gi|307596206|ref|YP_003902523.1| - 0.028 13.8 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2529) Cucumo_coat PF00760.13 gi|307596206|ref|YP_003902523.1| - 0.037 12.9 0.1 3.5 6.5 0.0 2.2 2 0 0 2 2 2 0 Cucumovirus coat protein Nuc-transf PF10127.4 gi|307596206|ref|YP_003902523.1| - 0.05 12.9 0.0 0.11 11.7 0.0 1.6 1 1 0 1 1 1 0 Predicted nucleotidyltransferase PHB_acc PF05233.8 gi|307596206|ref|YP_003902523.1| - 0.11 12.1 0.0 0.3 10.8 0.0 1.7 1 0 0 1 1 1 0 PHB accumulation regulatory domain HTH_36 PF13730.1 gi|307596207|ref|YP_003902524.1| - 0.024 14.7 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma54_CBD PF04963.8 gi|307596207|ref|YP_003902524.1| - 0.028 13.8 0.1 0.035 13.5 0.0 1.0 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain HTH_45 PF14947.1 gi|307596207|ref|YP_003902524.1| - 0.095 12.5 0.1 0.12 12.1 0.1 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix Cdc6_C PF09079.6 gi|307596207|ref|YP_003902524.1| - 0.12 12.0 0.1 0.23 11.1 0.0 1.5 1 1 0 1 1 1 0 CDC6, C terminal Aldo_ket_red PF00248.16 gi|307596208|ref|YP_003902525.1| - 1.8e-65 220.5 0.0 2.1e-65 220.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family SdpI PF13630.1 gi|307596209|ref|YP_003902526.1| - 0.84 9.3 7.6 0.67 9.7 0.1 2.6 2 0 0 2 2 2 0 SdpI/YhfL protein family Sec5 PF15469.1 gi|307596210|ref|YP_003902527.1| - 0.0063 16.2 0.5 0.0069 16.1 0.3 1.0 1 0 0 1 1 1 1 Exocyst complex component Sec5 Flu_NS2 PF00601.14 gi|307596210|ref|YP_003902527.1| - 0.01 16.0 0.5 0.011 15.9 0.3 1.1 1 0 0 1 1 1 0 Influenza non-structural protein (NS2) DUF4515 PF14988.1 gi|307596210|ref|YP_003902527.1| - 0.018 14.6 1.6 0.019 14.6 1.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4515) DUF1664 PF07889.7 gi|307596210|ref|YP_003902527.1| - 0.02 14.6 0.2 0.022 14.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF3510 PF12022.3 gi|307596210|ref|YP_003902527.1| - 0.021 14.9 0.2 0.022 14.8 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3510) HSBP1 PF06825.7 gi|307596210|ref|YP_003902527.1| - 0.038 13.5 0.1 0.045 13.3 0.1 1.1 1 0 0 1 1 1 0 Heat shock factor binding protein 1 V-ATPase_G PF03179.10 gi|307596210|ref|YP_003902527.1| - 0.056 13.7 1.9 0.056 13.7 1.3 1.0 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Apolipoprotein PF01442.13 gi|307596210|ref|YP_003902527.1| - 0.057 12.9 0.3 0.061 12.8 0.2 1.0 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain LUC7 PF03194.10 gi|307596210|ref|YP_003902527.1| - 0.067 12.7 1.5 0.069 12.6 1.0 1.0 1 0 0 1 1 1 0 LUC7 N_terminus Ribosomal_L12 PF00542.14 gi|307596210|ref|YP_003902527.1| - 0.083 12.9 0.7 0.091 12.7 0.5 1.1 1 0 0 1 1 1 0 Ribosomal protein L7/L12 C-terminal domain ApoLp-III PF07464.6 gi|307596210|ref|YP_003902527.1| - 0.085 12.8 0.9 0.089 12.8 0.6 1.1 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Methyltransf_14 PF08484.6 gi|307596210|ref|YP_003902527.1| - 0.085 12.4 0.6 0.082 12.4 0.4 1.0 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain UPF0449 PF15136.1 gi|307596210|ref|YP_003902527.1| - 0.099 12.8 0.3 0.1 12.8 0.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0449 tRNA_synt_1c_R1 PF04558.10 gi|307596210|ref|YP_003902527.1| - 0.12 11.8 1.2 0.13 11.7 0.8 1.0 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 YtxH PF12732.2 gi|307596210|ref|YP_003902527.1| - 0.17 12.2 0.8 0.18 12.1 0.6 1.1 1 0 0 1 1 1 0 YtxH-like protein DUF4546 PF15079.1 gi|307596210|ref|YP_003902527.1| - 1.1 8.3 4.0 1.1 8.3 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4546) EF-1_beta_acid PF10587.4 gi|307596210|ref|YP_003902527.1| - 2.4 8.3 6.0 1.8 8.7 0.4 2.1 2 0 0 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region vATP-synt_AC39 PF01992.11 gi|307596211|ref|YP_003902528.1| - 1.3e-17 63.9 0.1 2e-17 63.3 0.1 1.2 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Apolipoprotein PF01442.13 gi|307596212|ref|YP_003902529.1| - 0.00023 20.7 1.5 0.00028 20.4 1.0 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Col_cuticle_N PF01484.12 gi|307596212|ref|YP_003902529.1| - 0.0014 18.3 0.8 0.0053 16.4 0.1 2.1 2 0 0 2 2 2 1 Nematode cuticle collagen N-terminal domain Drf_FH3 PF06367.11 gi|307596212|ref|YP_003902529.1| - 0.0056 16.1 3.1 0.0056 16.0 1.6 1.4 1 1 0 1 1 1 1 Diaphanous FH3 Domain OmpH PF03938.9 gi|307596212|ref|YP_003902529.1| - 0.0083 16.0 3.4 0.021 14.7 2.4 1.6 1 1 0 1 1 1 1 Outer membrane protein (OmpH-like) Vps16_C PF04840.7 gi|307596212|ref|YP_003902529.1| - 0.0085 15.0 2.0 0.0095 14.9 1.4 1.0 1 0 0 1 1 1 1 Vps16, C-terminal region DUF3510 PF12022.3 gi|307596212|ref|YP_003902529.1| - 0.0093 16.0 2.4 0.017 15.1 0.5 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF3510) Phasin PF05597.6 gi|307596212|ref|YP_003902529.1| - 0.01 15.5 8.3 0.038 13.7 2.2 2.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Sld5 PF05916.6 gi|307596212|ref|YP_003902529.1| - 0.012 15.8 0.4 0.014 15.6 0.3 1.3 1 0 0 1 1 1 0 GINS complex protein DUF4239 PF14023.1 gi|307596212|ref|YP_003902529.1| - 0.012 14.9 1.3 0.015 14.7 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) Mitofilin PF09731.4 gi|307596212|ref|YP_003902529.1| - 0.013 14.2 7.9 0.015 13.9 5.5 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF387 PF04079.11 gi|307596212|ref|YP_003902529.1| - 0.014 14.7 2.2 0.018 14.4 1.3 1.4 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) Leuk-A4-hydro_C PF09127.6 gi|307596212|ref|YP_003902529.1| - 0.016 14.7 0.7 0.025 14.1 0.3 1.5 1 1 0 1 1 1 0 Leukotriene A4 hydrolase, C-terminal Ded_cyto PF06920.8 gi|307596212|ref|YP_003902529.1| - 0.018 14.3 0.3 0.02 14.1 0.2 1.0 1 0 0 1 1 1 0 Dedicator of cytokinesis Lipoprotein_7 PF01540.11 gi|307596212|ref|YP_003902529.1| - 0.019 14.0 7.7 0.024 13.7 5.3 1.1 1 0 0 1 1 1 0 Adhesin lipoprotein DUF2884 PF11101.3 gi|307596212|ref|YP_003902529.1| - 0.024 14.0 1.5 0.044 13.1 1.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) DUF1104 PF06518.6 gi|307596212|ref|YP_003902529.1| - 0.025 14.6 6.1 0.053 13.6 4.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1104) DUF148 PF02520.12 gi|307596212|ref|YP_003902529.1| - 0.029 14.1 5.2 0.27 11.0 3.0 2.2 1 1 1 2 2 2 0 Domain of unknown function DUF148 DUF4071 PF13281.1 gi|307596212|ref|YP_003902529.1| - 0.031 13.1 2.3 0.033 13.0 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) DNA_topoisoIV PF00521.15 gi|307596212|ref|YP_003902529.1| - 0.031 13.1 3.5 0.032 13.0 2.5 1.0 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A RIB43A PF05914.7 gi|307596212|ref|YP_003902529.1| - 0.04 12.5 3.1 0.064 11.8 2.1 1.4 1 1 0 1 1 1 0 RIB43A YwqJ-deaminase PF14431.1 gi|307596212|ref|YP_003902529.1| - 0.042 13.6 0.2 0.055 13.3 0.1 1.3 1 0 0 1 1 1 0 YwqJ-like deaminase Phe_tRNA-synt_N PF02912.13 gi|307596212|ref|YP_003902529.1| - 0.048 13.3 4.6 0.72 9.6 0.3 2.6 1 1 2 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain DUF445 PF04286.7 gi|307596212|ref|YP_003902529.1| - 0.05 13.1 6.5 0.079 12.4 4.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF445) ING PF12998.2 gi|307596212|ref|YP_003902529.1| - 0.053 13.7 8.3 0.26 11.5 1.4 2.1 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding DUF2317 PF10079.4 gi|307596212|ref|YP_003902529.1| - 0.058 12.0 2.1 0.07 11.7 1.5 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) GldM_N PF12081.3 gi|307596212|ref|YP_003902529.1| - 0.06 12.8 2.4 0.08 12.4 1.7 1.3 1 0 0 1 1 1 0 GldM N-terminal domain Prominin PF05478.6 gi|307596212|ref|YP_003902529.1| - 0.064 10.7 2.6 0.08 10.4 1.8 1.2 1 0 0 1 1 1 0 Prominin Swi5 PF07061.6 gi|307596212|ref|YP_003902529.1| - 0.065 13.0 5.3 1.3 8.8 0.5 2.1 1 1 1 2 2 2 0 Swi5 NusB PF01029.13 gi|307596212|ref|YP_003902529.1| - 0.066 13.1 3.2 0.083 12.8 2.0 1.3 1 1 0 1 1 1 0 NusB family RHD3 PF05879.7 gi|307596212|ref|YP_003902529.1| - 0.068 11.0 4.2 0.081 10.8 2.9 1.0 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) ApoLp-III PF07464.6 gi|307596212|ref|YP_003902529.1| - 0.074 13.0 7.5 0.8 9.7 5.2 2.0 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Baculo_PEP_C PF04513.7 gi|307596212|ref|YP_003902529.1| - 0.079 12.7 0.2 0.17 11.6 0.1 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Med7 PF05983.6 gi|307596212|ref|YP_003902529.1| - 0.079 12.7 2.3 0.14 11.9 1.5 1.5 1 1 0 1 1 1 0 MED7 protein DUF3708 PF12501.3 gi|307596212|ref|YP_003902529.1| - 0.084 12.7 0.1 0.16 11.8 0.0 1.5 1 1 0 1 1 1 0 Phosphate ATP-binding cassette transporter ISG65-75 PF11727.3 gi|307596212|ref|YP_003902529.1| - 0.11 11.5 8.6 0.41 9.6 6.0 1.8 1 1 0 1 1 1 0 Invariant surface glycoprotein ARGLU PF15346.1 gi|307596212|ref|YP_003902529.1| - 0.14 11.9 14.8 0.26 11.0 10.3 1.4 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 CBFD_NFYB_HMF PF00808.18 gi|307596212|ref|YP_003902529.1| - 0.14 12.1 1.7 0.46 10.5 0.2 2.2 1 1 1 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Spore_GerAC PF05504.6 gi|307596212|ref|YP_003902529.1| - 0.15 11.7 10.5 0.77 9.5 1.5 2.1 1 1 1 2 2 2 0 Spore germination B3/ GerAC like, C-terminal DUF3644 PF12358.3 gi|307596212|ref|YP_003902529.1| - 0.17 12.1 1.8 0.25 11.6 0.8 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3644) Phage_min_cap2 PF06152.6 gi|307596212|ref|YP_003902529.1| - 0.19 10.7 4.3 0.21 10.5 3.0 1.1 1 0 0 1 1 1 0 Phage minor capsid protein 2 Fib_alpha PF08702.5 gi|307596212|ref|YP_003902529.1| - 0.19 11.8 6.1 0.4 10.7 4.2 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Taeniidae_ag PF05596.6 gi|307596212|ref|YP_003902529.1| - 0.2 11.5 2.1 2 8.3 0.1 2.4 2 0 0 2 2 2 0 Taeniidae antigen MCM_N PF14551.1 gi|307596212|ref|YP_003902529.1| - 0.31 11.5 2.6 1.2 9.6 0.8 1.9 1 1 1 2 2 2 0 MCM N-terminal domain Gp-FAR-1 PF05823.7 gi|307596212|ref|YP_003902529.1| - 0.33 10.9 6.1 0.35 10.8 3.3 1.6 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) PA28_alpha PF02251.13 gi|307596212|ref|YP_003902529.1| - 0.34 11.1 1.7 1.4 9.0 0.2 2.4 2 0 0 2 2 2 0 Proteasome activator pa28 alpha subunit DUF4404 PF14357.1 gi|307596212|ref|YP_003902529.1| - 0.38 11.2 3.4 8.5 6.8 2.3 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4404) V-ATPase_G PF03179.10 gi|307596212|ref|YP_003902529.1| - 0.39 11.0 8.9 0.58 10.4 5.6 1.7 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit HSCB_C PF07743.8 gi|307596212|ref|YP_003902529.1| - 0.4 11.1 5.2 9.9 6.7 0.7 2.7 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain RICH PF05062.7 gi|307596212|ref|YP_003902529.1| - 0.41 10.8 9.4 1.8 8.7 0.4 3.0 1 1 0 1 1 1 0 RICH domain V-SNARE PF05008.10 gi|307596212|ref|YP_003902529.1| - 0.46 10.6 7.0 0.55 10.4 1.0 2.2 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus UTP15_C PF09384.5 gi|307596212|ref|YP_003902529.1| - 0.52 9.9 5.4 3.3 7.3 0.6 2.1 1 1 0 2 2 2 0 UTP15 C terminal RuvA_C PF07499.8 gi|307596212|ref|YP_003902529.1| - 0.58 10.3 2.4 26 5.0 0.1 2.4 2 0 0 2 2 2 0 RuvA, C-terminal domain RPN7 PF10602.4 gi|307596212|ref|YP_003902529.1| - 0.89 8.9 6.7 4.2 6.7 0.6 2.1 2 0 0 2 2 2 0 26S proteasome subunit RPN7 ACCA PF03255.9 gi|307596212|ref|YP_003902529.1| - 0.93 9.0 7.6 1.9 8.0 0.9 2.1 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SPOB_a PF14689.1 gi|307596212|ref|YP_003902529.1| - 1.3 8.6 4.2 1.8 8.1 0.4 2.8 1 1 1 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain BAG PF02179.11 gi|307596212|ref|YP_003902529.1| - 1.4 9.1 7.2 2.3 8.4 1.6 2.7 1 1 2 3 3 3 0 BAG domain PTPlike_phytase PF14566.1 gi|307596212|ref|YP_003902529.1| - 1.6 8.7 5.5 8.3 6.4 1.9 1.9 1 1 1 2 2 2 0 Inositol hexakisphosphate LUC7 PF03194.10 gi|307596212|ref|YP_003902529.1| - 1.8 8.0 7.3 2.2 7.7 5.0 1.1 1 0 0 1 1 1 0 LUC7 N_terminus cwf21 PF08312.7 gi|307596212|ref|YP_003902529.1| - 2 8.3 13.6 1.5 8.7 2.0 3.3 1 1 1 2 2 2 0 cwf21 domain YtxH PF12732.2 gi|307596212|ref|YP_003902529.1| - 2.8 8.3 6.7 28 5.1 4.7 2.2 1 1 0 1 1 1 0 YtxH-like protein DUF2508 PF10704.4 gi|307596212|ref|YP_003902529.1| - 2.9 8.1 7.0 2.9 8.1 0.2 2.7 1 1 1 3 3 3 0 Protein of unknown function (DUF2508) DUF4355 PF14265.1 gi|307596212|ref|YP_003902529.1| - 3.6 7.5 10.2 0.35 10.8 0.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4355) DUF4546 PF15079.1 gi|307596212|ref|YP_003902529.1| - 3.7 6.6 12.8 0.62 9.1 1.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4546) FlaC_arch PF05377.6 gi|307596212|ref|YP_003902529.1| - 4.7 7.1 11.7 0.095 12.6 1.5 2.6 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) SUV3_C PF12513.3 gi|307596212|ref|YP_003902529.1| - 5.5 6.5 7.6 3 7.3 0.1 3.5 3 1 1 4 4 4 0 Mitochondrial degradasome RNA helicase subunit C terminal DUF4163 PF13739.1 gi|307596212|ref|YP_003902529.1| - 5.5 7.8 6.4 49 4.7 4.4 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4163) PsiE PF06146.7 gi|307596213|ref|YP_003902530.1| - 2.6e-09 37.1 8.0 2.6e-09 37.1 5.6 1.9 2 1 0 2 2 2 1 Phosphate-starvation-inducible E DUF1109 PF06532.6 gi|307596213|ref|YP_003902530.1| - 0.71 9.2 14.6 0.037 13.4 5.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1109) Nol1_Nop2_Fmu PF01189.12 gi|307596216|ref|YP_003902533.1| - 7.5e-33 114.1 0.0 3.2e-32 112.0 0.0 1.8 2 0 0 2 2 2 1 NOL1/NOP2/sun family PUA PF01472.15 gi|307596216|ref|YP_003902533.1| - 1.3e-17 63.2 1.2 3.1e-17 62.0 0.8 1.6 1 0 0 1 1 1 1 PUA domain Methyltransf_26 PF13659.1 gi|307596216|ref|YP_003902533.1| - 3.2e-05 23.9 0.0 4.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307596216|ref|YP_003902533.1| - 0.00063 20.3 0.0 0.0012 19.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307596216|ref|YP_003902533.1| - 0.0011 18.5 0.0 0.0031 17.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|307596216|ref|YP_003902533.1| - 0.0045 17.4 0.0 0.011 16.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|307596216|ref|YP_003902533.1| - 0.027 14.4 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 FtsJ-like methyltransferase tRNA_edit PF04073.10 gi|307596217|ref|YP_003902534.1| - 1.9e-29 102.0 0.1 2.2e-29 101.8 0.1 1.0 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain GHMP_kinases_N PF00288.21 gi|307596218|ref|YP_003902535.1| - 1.3e-15 57.1 0.2 1.3e-15 57.1 0.2 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.4 gi|307596218|ref|YP_003902535.1| - 4.8e-13 48.1 0.0 8.3e-13 47.3 0.0 1.4 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_C PF08544.8 gi|307596218|ref|YP_003902535.1| - 2.5e-12 46.7 0.0 8.3e-12 45.1 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal GalP_UDP_transf PF01087.17 gi|307596219|ref|YP_003902536.1| - 3.6e-24 85.8 0.0 5.8e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|307596219|ref|YP_003902536.1| - 7.3e-17 61.4 0.0 1.2e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|307596219|ref|YP_003902536.1| - 0.00072 19.7 0.7 0.0073 16.5 0.4 2.1 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.18 gi|307596219|ref|YP_003902536.1| - 0.0024 18.3 0.1 0.14 12.6 0.1 2.2 2 0 0 2 2 2 1 HIT domain Pyr_redox_2 PF07992.9 gi|307596220|ref|YP_003902537.1| - 3.3e-35 121.7 0.2 4.2e-35 121.4 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|307596220|ref|YP_003902537.1| - 1.9e-21 77.0 0.4 7.2e-16 58.8 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|307596220|ref|YP_003902537.1| - 1.8e-17 63.5 1.8 4.1e-13 49.5 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|307596220|ref|YP_003902537.1| - 2e-09 36.8 1.4 7.8e-07 28.2 0.0 3.1 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.17 gi|307596220|ref|YP_003902537.1| - 2.9e-09 36.3 8.6 1.6e-05 23.9 0.8 4.1 4 1 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|307596220|ref|YP_003902537.1| - 4.6e-09 35.2 1.9 7e-05 21.4 0.4 3.9 4 0 0 4 4 4 2 HI0933-like protein DAO PF01266.19 gi|307596220|ref|YP_003902537.1| - 2.9e-08 32.9 9.0 0.00039 19.4 1.8 3.1 2 1 1 3 3 3 3 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|307596220|ref|YP_003902537.1| - 4e-08 32.7 2.1 2.3e-07 30.2 0.0 2.5 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|307596220|ref|YP_003902537.1| - 1.2e-07 31.1 1.4 0.00073 18.6 0.4 2.1 2 0 0 2 2 2 2 FAD binding domain K_oxygenase PF13434.1 gi|307596220|ref|YP_003902537.1| - 6.9e-07 28.5 0.1 5.5e-05 22.2 0.0 2.4 2 1 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|307596220|ref|YP_003902537.1| - 9.5e-07 28.1 2.2 0.00034 19.7 0.3 2.3 2 0 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.1 gi|307596220|ref|YP_003902537.1| - 1.7e-06 27.9 1.2 0.0049 16.8 0.2 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|307596220|ref|YP_003902537.1| - 6.7e-06 25.2 0.5 0.12 11.2 0.2 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|307596220|ref|YP_003902537.1| - 1.3e-05 25.4 0.2 0.028 14.6 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|307596220|ref|YP_003902537.1| - 5.2e-05 23.0 0.9 0.15 11.8 0.0 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|307596220|ref|YP_003902537.1| - 0.00069 19.7 0.2 0.083 12.9 0.0 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|307596220|ref|YP_003902537.1| - 0.041 13.4 0.3 1.2 8.7 0.1 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|307596220|ref|YP_003902537.1| - 0.46 9.0 4.6 0.99 7.9 0.7 2.1 2 0 0 2 2 2 0 Tryptophan halogenase HTH_DeoR PF08220.7 gi|307596221|ref|YP_003902538.1| - 0.0071 15.8 0.1 0.051 13.1 0.0 2.3 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|307596221|ref|YP_003902538.1| - 0.013 15.1 0.1 0.035 13.7 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_36 PF13730.1 gi|307596221|ref|YP_003902538.1| - 0.015 15.3 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|307596221|ref|YP_003902538.1| - 0.11 12.2 0.9 6.6 6.6 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF1641 PF07849.6 gi|307596222|ref|YP_003902539.1| - 0.00022 20.7 9.5 0.0028 17.2 0.3 3.9 3 1 1 4 4 4 2 Protein of unknown function (DUF1641) HEAT_2 PF13646.1 gi|307596222|ref|YP_003902539.1| - 0.03 14.5 2.2 0.79 10.0 0.2 3.3 2 1 0 2 2 2 0 HEAT repeats HEAT_PBS PF03130.11 gi|307596222|ref|YP_003902539.1| - 0.62 10.6 2.6 1.2e+02 3.5 0.0 4.5 4 1 0 4 4 4 0 PBS lyase HEAT-like repeat Pyr_redox_2 PF07992.9 gi|307596223|ref|YP_003902540.1| - 1.6e-14 54.2 0.0 1.3e-13 51.2 0.0 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|307596223|ref|YP_003902540.1| - 3.3e-06 26.9 0.0 0.067 12.9 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|307596223|ref|YP_003902540.1| - 6.2e-06 26.5 0.0 0.044 14.1 0.0 2.6 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|307596223|ref|YP_003902540.1| - 0.00015 20.8 0.0 0.006 15.5 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|307596223|ref|YP_003902540.1| - 0.00037 19.0 0.0 0.0048 15.4 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|307596223|ref|YP_003902540.1| - 0.00037 20.4 0.0 0.0013 18.7 0.0 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|307596223|ref|YP_003902540.1| - 0.00037 19.5 0.0 0.037 12.9 0.0 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|307596223|ref|YP_003902540.1| - 0.005 17.0 0.0 0.0089 16.2 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|307596223|ref|YP_003902540.1| - 0.014 14.5 0.0 0.025 13.6 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain DUF1188 PF06690.6 gi|307596223|ref|YP_003902540.1| - 0.043 12.9 0.0 0.086 11.9 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1188) TrkA_N PF02254.13 gi|307596223|ref|YP_003902540.1| - 0.048 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain FAD_binding_2 PF00890.19 gi|307596223|ref|YP_003902540.1| - 0.066 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.9 gi|307596223|ref|YP_003902540.1| - 0.13 10.9 0.0 0.3 9.6 0.0 1.6 2 0 0 2 2 2 0 Tryptophan halogenase TusA PF01206.12 gi|307596224|ref|YP_003902541.1| - 2.7e-18 65.3 0.0 3.2e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|307596224|ref|YP_003902541.1| - 0.056 13.0 0.0 0.081 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.1 gi|307596225|ref|YP_003902542.1| - 1.1e-15 57.6 0.8 1.2e-14 54.3 0.6 1.9 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|307596225|ref|YP_003902542.1| - 5e-07 29.7 0.0 8.3e-07 29.0 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.5 gi|307596225|ref|YP_003902542.1| - 0.0047 16.3 1.0 0.7 9.3 0.2 2.5 2 0 0 2 2 2 2 Anti-repressor SinI AA_permease PF00324.16 gi|307596226|ref|YP_003902543.1| - 3.4e-31 108.1 50.1 4.4e-31 107.7 34.7 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|307596226|ref|YP_003902543.1| - 3.5e-16 58.7 61.4 4.5e-16 58.4 42.5 1.1 1 0 0 1 1 1 1 Amino acid permease Aminotran_3 PF00202.16 gi|307596227|ref|YP_003902544.1| - 1.1e-95 320.3 0.0 1.3e-95 320.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|307596227|ref|YP_003902544.1| - 0.054 12.4 0.0 0.17 10.8 0.0 1.7 1 1 0 1 1 1 0 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|307596227|ref|YP_003902544.1| - 0.1 11.7 0.0 0.2 10.7 0.0 1.5 2 0 0 2 2 2 0 Beta-eliminating lyase Fe-ADH_2 PF13685.1 gi|307596228|ref|YP_003902545.1| - 8.7e-52 175.9 0.0 1.3e-51 175.3 0.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|307596228|ref|YP_003902545.1| - 1.8e-28 99.2 0.6 1.5e-27 96.2 0.4 1.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|307596228|ref|YP_003902545.1| - 2.9e-13 49.3 0.1 6.9e-13 48.1 0.1 1.5 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF515 PF04415.7 gi|307596229|ref|YP_003902546.1| - 0.012 13.8 2.0 0.013 13.8 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF515) DUF2526 PF10735.4 gi|307596229|ref|YP_003902546.1| - 0.026 14.4 0.2 0.046 13.7 0.1 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2526) YlbD_coat PF14071.1 gi|307596229|ref|YP_003902546.1| - 0.092 12.8 0.6 0.091 12.8 0.5 1.0 1 0 0 1 1 1 0 Putative coat protein CKAP2_C PF15297.1 gi|307596229|ref|YP_003902546.1| - 0.1 11.4 1.2 0.1 11.3 0.9 1.0 1 0 0 1 1 1 0 Cytoskeleton-associated protein 2 C-terminus DUF1542 PF07564.6 gi|307596229|ref|YP_003902546.1| - 0.23 11.4 2.1 0.28 11.2 1.5 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1542) ATP-synt_E_2 PF08112.6 gi|307596229|ref|YP_003902546.1| - 0.27 11.3 4.4 0.45 10.6 3.1 1.5 1 1 0 1 1 1 0 ATP synthase epsilon subunit DUF3400 PF11880.3 gi|307596231|ref|YP_003902548.1| - 0.066 12.4 0.1 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) DUF4439 PF14530.1 gi|307596231|ref|YP_003902548.1| - 0.12 12.8 0.0 0.14 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4439) DAO PF01266.19 gi|307596232|ref|YP_003902549.1| - 1.2e-13 50.7 0.2 1.1e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|307596232|ref|YP_003902549.1| - 2.5e-10 40.5 0.2 0.0015 18.4 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|307596232|ref|YP_003902549.1| - 1.2e-09 37.2 0.0 1.6e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|307596232|ref|YP_003902549.1| - 7.3e-09 34.9 2.0 0.001 17.9 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|307596232|ref|YP_003902549.1| - 2.6e-06 26.6 0.1 0.00015 20.8 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|307596232|ref|YP_003902549.1| - 4e-05 23.5 0.1 0.0003 20.7 0.0 2.5 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|307596232|ref|YP_003902549.1| - 6.9e-05 22.0 0.5 0.0004 19.5 0.1 2.3 3 0 0 3 3 3 1 Thi4 family FAD_binding_2 PF00890.19 gi|307596232|ref|YP_003902549.1| - 8.4e-05 21.5 2.2 0.00052 18.9 0.0 2.7 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|307596232|ref|YP_003902549.1| - 0.0001 22.4 0.0 0.11 12.4 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|307596232|ref|YP_003902549.1| - 0.00061 19.5 0.1 0.0022 17.7 0.0 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|307596232|ref|YP_003902549.1| - 0.0011 19.2 0.1 2.8 8.4 0.0 3.5 3 1 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|307596232|ref|YP_003902549.1| - 0.0037 16.3 0.0 0.0074 15.3 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|307596232|ref|YP_003902549.1| - 0.031 12.9 0.0 0.047 12.3 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FAD_oxidored PF12831.2 gi|307596232|ref|YP_003902549.1| - 0.048 12.7 0.4 0.078 12.0 0.3 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Adenylsucc_synt PF00709.16 gi|307596233|ref|YP_003902550.1| - 1.5e-74 251.1 0.3 2e-36 125.5 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Lyase_1 PF00206.15 gi|307596234|ref|YP_003902551.1| - 2.2e-38 132.2 0.0 3e-38 131.7 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|307596234|ref|YP_003902551.1| - 2.8e-31 107.7 0.0 5.4e-31 106.8 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF1656 PF07869.7 gi|307596236|ref|YP_003902553.1| - 4 7.3 7.7 0.24 11.2 1.9 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) Antitoxin-MazE PF04014.13 gi|307596237|ref|YP_003902554.1| - 7.9e-15 54.2 0.7 7.9e-15 54.2 0.5 1.9 1 1 1 2 2 2 1 Antidote-toxin recognition MazE AbrB-like PF14250.1 gi|307596237|ref|YP_003902554.1| - 0.015 15.1 0.2 0.04 13.8 0.1 1.6 2 0 0 2 2 2 0 AbrB-like transcriptional regulator DUF1905 PF08922.6 gi|307596237|ref|YP_003902554.1| - 0.017 14.6 0.1 0.037 13.5 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) PIN PF01850.16 gi|307596238|ref|YP_003902555.1| - 6.3e-07 29.7 0.7 6.6e-07 29.6 0.5 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|307596238|ref|YP_003902555.1| - 0.033 14.8 0.2 0.034 14.8 0.1 1.0 1 0 0 1 1 1 0 PIN domain PIN PF01850.16 gi|307596239|ref|YP_003902556.1| - 6.6e-05 23.2 0.3 7.3e-05 23.0 0.2 1.1 1 0 0 1 1 1 1 PIN domain ADC PF06314.6 gi|307596240|ref|YP_003902557.1| - 1.1e-44 152.6 0.0 1.3e-44 152.3 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) CCG PF02754.11 gi|307596241|ref|YP_003902558.1| - 6.5e-06 26.0 0.0 0.0001 22.2 0.0 2.3 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_8 PF13183.1 gi|307596242|ref|YP_003902559.1| - 3.8e-09 36.4 3.9 5.1e-09 36.0 2.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307596242|ref|YP_003902559.1| - 1.2e-08 35.2 3.5 1.5e-08 34.8 2.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307596242|ref|YP_003902559.1| - 1e-05 25.1 7.0 0.00015 21.5 5.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307596242|ref|YP_003902559.1| - 1.7e-05 24.9 3.7 0.0054 16.9 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307596242|ref|YP_003902559.1| - 2.4e-05 24.5 10.5 0.00045 20.5 7.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307596242|ref|YP_003902559.1| - 0.00021 21.6 4.6 0.0019 18.5 0.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307596242|ref|YP_003902559.1| - 0.00028 20.6 4.2 0.19 11.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|307596242|ref|YP_003902559.1| - 0.0013 18.3 3.5 0.005 16.4 0.1 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|307596242|ref|YP_003902559.1| - 0.0071 15.9 12.8 0.031 13.8 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|307596242|ref|YP_003902559.1| - 0.026 15.2 7.9 0.12 13.1 5.7 1.8 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Ank_3 PF13606.1 gi|307596242|ref|YP_003902559.1| - 0.032 14.4 0.1 6.9 7.2 0.0 2.4 2 0 0 2 2 2 0 Ankyrin repeat Ank_4 PF13637.1 gi|307596242|ref|YP_003902559.1| - 0.075 13.5 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 Ankyrin repeats (many copies) Fer4_15 PF13459.1 gi|307596242|ref|YP_003902559.1| - 0.088 13.3 3.5 5 7.7 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Ank_2 PF12796.2 gi|307596242|ref|YP_003902559.1| - 0.095 13.0 0.0 0.13 12.6 0.0 1.2 1 0 0 1 1 1 0 Ankyrin repeats (3 copies) Fer4_6 PF12837.2 gi|307596242|ref|YP_003902559.1| - 0.1 12.4 11.2 0.11 12.3 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Ecl1 PF12855.2 gi|307596242|ref|YP_003902559.1| - 0.19 11.0 2.4 2 7.7 0.2 2.2 2 0 0 2 2 2 0 Life-span regulatory factor Fer4_2 PF12797.2 gi|307596242|ref|YP_003902559.1| - 0.26 11.2 11.3 0.24 11.3 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|307596242|ref|YP_003902559.1| - 0.92 10.2 16.6 2.4 8.9 4.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|307596242|ref|YP_003902559.1| - 2.7 8.5 12.3 9.2 6.9 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain A2L_zn_ribbon PF08792.5 gi|307596242|ref|YP_003902559.1| - 6.7 6.3 7.6 8.3 5.9 1.4 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain FAD-oxidase_C PF02913.14 gi|307596243|ref|YP_003902560.1| - 5e-41 140.6 0.0 7.1e-41 140.1 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|307596243|ref|YP_003902560.1| - 1.1e-37 128.5 0.7 2.6e-37 127.3 0.5 1.7 1 0 0 1 1 1 1 FAD binding domain CpcD PF01383.16 gi|307596243|ref|YP_003902560.1| - 0.12 12.5 0.1 9.3 6.5 0.0 2.8 3 0 0 3 3 3 0 CpcD/allophycocyanin linker domain Antitoxin-MazE PF04014.13 gi|307596244|ref|YP_003902561.1| - 1.4e-06 27.8 0.3 0.00053 19.6 0.0 2.6 2 1 0 2 2 2 2 Antidote-toxin recognition MazE zf-FPG_IleRS PF06827.9 gi|307596245|ref|YP_003902562.1| - 0.063 12.9 0.1 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS HAS-barrel PF09378.5 gi|307596245|ref|YP_003902562.1| - 0.14 12.1 0.1 0.32 10.9 0.1 1.6 1 0 0 1 1 1 0 HAS barrel domain PEX-1N PF09262.6 gi|307596246|ref|YP_003902563.1| - 0.12 12.4 0.1 1.1 9.3 0.1 2.1 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal DUF3598 PF12204.3 gi|307596246|ref|YP_003902563.1| - 0.17 11.0 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3598) CBS PF00571.23 gi|307596247|ref|YP_003902564.1| - 6.2e-25 86.7 9.2 5.6e-13 48.4 2.0 2.2 2 0 0 2 2 2 2 CBS domain MFS_1 PF07690.11 gi|307596248|ref|YP_003902565.1| - 0.74 8.4 63.6 7.8 5.0 44.1 2.5 1 1 0 1 1 1 0 Major Facilitator Superfamily Radical_SAM PF04055.16 gi|307596249|ref|YP_003902566.1| - 5.8e-15 55.8 0.2 1.9e-14 54.1 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|307596249|ref|YP_003902566.1| - 0.043 13.6 0.1 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 B12 binding domain eIF-5_eIF-2B PF01873.12 gi|307596250|ref|YP_003902567.1| - 2.6e-31 107.9 0.0 3e-31 107.6 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.7 gi|307596250|ref|YP_003902567.1| - 0.0038 16.5 0.9 0.0062 15.8 0.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Elf1 PF05129.8 gi|307596250|ref|YP_003902567.1| - 0.018 14.6 0.1 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF2387 PF09526.5 gi|307596250|ref|YP_003902567.1| - 0.033 14.0 0.3 0.063 13.2 0.2 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.6 gi|307596250|ref|YP_003902567.1| - 0.07 12.8 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|307596250|ref|YP_003902567.1| - 0.072 13.4 1.0 0.19 12.0 0.7 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar RRN7 PF11781.3 gi|307596250|ref|YP_003902567.1| - 0.078 12.4 2.5 0.43 10.1 1.8 2.0 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 GATA PF00320.22 gi|307596250|ref|YP_003902567.1| - 0.13 11.6 0.2 0.22 10.9 0.1 1.4 1 0 0 1 1 1 0 GATA zinc finger ACT_4 PF13291.1 gi|307596251|ref|YP_003902568.1| - 0.056 13.7 1.7 0.81 10.0 0.1 3.1 2 1 0 2 2 2 0 ACT domain Adenosine_kin PF04008.9 gi|307596251|ref|YP_003902568.1| - 0.08 12.4 0.0 0.24 10.9 0.0 1.8 2 0 0 2 2 2 0 Adenosine specific kinase ACT PF01842.20 gi|307596251|ref|YP_003902568.1| - 0.089 12.3 0.0 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 ACT domain CCG PF02754.11 gi|307596252|ref|YP_003902569.1| - 7.7e-08 32.2 0.0 2.1e-06 27.6 0.0 2.3 2 0 0 2 2 2 1 Cysteine-rich domain Peptidase_M24 PF00557.19 gi|307596254|ref|YP_003902571.1| - 1e-36 126.5 0.0 1.3e-36 126.1 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|307596254|ref|YP_003902571.1| - 1.2e-18 67.9 0.0 1.9e-18 67.2 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF998 PF06197.8 gi|307596255|ref|YP_003902572.1| - 3.4e-27 94.9 20.9 4.1e-27 94.6 14.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF3953 PF13129.1 gi|307596255|ref|YP_003902572.1| - 9.7 5.9 10.2 3 7.5 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3953) Thioredoxin_4 PF13462.1 gi|307596256|ref|YP_003902573.1| - 6.2e-09 36.0 0.0 8.6e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|307596256|ref|YP_003902573.1| - 2.9e-06 27.4 0.0 8.4e-06 25.9 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|307596256|ref|YP_003902573.1| - 0.00045 19.8 1.0 0.055 13.0 0.0 2.4 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Spore_YtrH PF14034.1 gi|307596257|ref|YP_003902574.1| - 0.11 12.4 4.5 0.26 11.2 3.1 1.7 1 0 0 1 1 1 0 Sporulation protein YtrH ZYG-11_interact PF05884.7 gi|307596257|ref|YP_003902574.1| - 0.26 10.3 7.0 0.37 9.8 4.8 1.2 1 0 0 1 1 1 0 Interactor of ZYG-11 Pox_P21 PF05313.7 gi|307596257|ref|YP_003902574.1| - 1.4 8.1 6.0 2.6 7.2 4.2 1.4 1 0 0 1 1 1 0 Poxvirus P21 membrane protein Col_cuticle_N PF01484.12 gi|307596257|ref|YP_003902574.1| - 1.5 8.5 4.9 2.5 7.8 0.0 2.5 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain DUF2157 PF09925.4 gi|307596257|ref|YP_003902574.1| - 5.7 6.5 13.1 6.5 6.3 7.7 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) Oxidored_q1 PF00361.15 gi|307596258|ref|YP_003902575.1| - 6.2e-24 84.7 28.0 6.2e-24 84.7 19.4 2.7 1 1 1 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF2537 PF10801.3 gi|307596258|ref|YP_003902575.1| - 0.00073 19.5 2.0 0.00073 19.5 1.4 4.7 5 2 2 7 7 7 1 Protein of unknown function (DUF2537) DUF2474 PF10617.4 gi|307596258|ref|YP_003902575.1| - 5.7 6.6 8.6 0.47 10.0 1.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) Oxidored_q2 PF00420.19 gi|307596259|ref|YP_003902576.1| - 8.1e-08 31.7 9.2 1e-07 31.4 6.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Fun_ATP-synt_8 PF05933.8 gi|307596259|ref|YP_003902576.1| - 0.24 11.4 6.6 1.5 8.9 0.6 2.4 2 0 0 2 2 2 0 Fungal ATP synthase protein 8 (A6L) Oxidored_q3 PF00499.15 gi|307596260|ref|YP_003902577.1| - 0.00021 21.1 22.4 0.00029 20.6 15.5 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Chs3p PF12271.3 gi|307596260|ref|YP_003902577.1| - 0.058 12.3 13.7 0.014 14.3 3.8 2.0 1 1 1 2 2 2 0 Chitin synthase III catalytic subunit DUF3624 PF12292.3 gi|307596260|ref|YP_003902577.1| - 1.2 9.6 3.3 3.4 8.1 2.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) CobA_CobO_BtuR PF02572.10 gi|307596261|ref|YP_003902578.1| - 4.8e-40 136.9 0.0 1.5e-39 135.3 0.0 1.6 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_22 PF13401.1 gi|307596261|ref|YP_003902578.1| - 0.016 15.3 0.0 0.031 14.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|307596261|ref|YP_003902578.1| - 0.025 14.4 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain TniB PF05621.6 gi|307596261|ref|YP_003902578.1| - 0.028 13.1 0.4 0.15 10.8 0.1 1.8 1 1 1 2 2 2 0 Bacterial TniB protein AAA_25 PF13481.1 gi|307596261|ref|YP_003902578.1| - 0.047 13.0 0.7 0.11 11.9 0.5 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|307596261|ref|YP_003902578.1| - 0.069 13.3 0.2 0.53 10.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HHH_7 PF14635.1 gi|307596261|ref|YP_003902578.1| - 0.095 12.8 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif AAA_19 PF13245.1 gi|307596261|ref|YP_003902578.1| - 0.13 12.0 1.5 0.31 10.8 1.0 1.6 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|307596261|ref|YP_003902578.1| - 0.14 11.5 1.1 0.56 9.6 0.4 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein BtpA PF03437.10 gi|307596262|ref|YP_003902579.1| - 4.5e-80 268.5 0.9 5.2e-80 268.3 0.6 1.0 1 0 0 1 1 1 1 BtpA family SecY PF00344.15 gi|307596263|ref|YP_003902580.1| - 0.54 9.1 10.8 0.61 8.9 7.5 1.2 1 0 0 1 1 1 0 SecY translocase HTH_5 PF01022.15 gi|307596264|ref|YP_003902581.1| - 2.4e-09 36.7 0.2 8.1e-09 35.0 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|307596264|ref|YP_003902581.1| - 3.3e-07 29.9 0.1 6.8e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|307596264|ref|YP_003902581.1| - 1.2e-05 24.6 0.3 2.5e-05 23.5 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|307596264|ref|YP_003902581.1| - 3e-05 23.6 0.0 7.7e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|307596264|ref|YP_003902581.1| - 4.9e-05 22.8 0.0 0.00074 19.0 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.7 gi|307596264|ref|YP_003902581.1| - 6.8e-05 22.4 0.3 0.00014 21.4 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_29 PF13551.1 gi|307596264|ref|YP_003902581.1| - 0.00011 22.3 0.0 0.00025 21.1 0.0 1.5 1 1 1 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|307596264|ref|YP_003902581.1| - 0.00023 21.1 0.0 0.0013 18.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|307596264|ref|YP_003902581.1| - 0.0027 17.9 0.1 0.0054 17.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|307596264|ref|YP_003902581.1| - 0.013 15.1 0.1 0.025 14.2 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain B-block_TFIIIC PF04182.7 gi|307596264|ref|YP_003902581.1| - 0.024 14.4 0.0 0.036 13.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|307596264|ref|YP_003902581.1| - 0.06 13.0 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|307596264|ref|YP_003902581.1| - 0.061 13.0 0.3 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 MarR family HALZ PF02183.13 gi|307596265|ref|YP_003902582.1| - 3.4e-05 23.4 1.5 0.0054 16.4 0.1 2.2 1 1 1 2 2 2 2 Homeobox associated leucine zipper IncA PF04156.9 gi|307596265|ref|YP_003902582.1| - 0.00022 20.8 0.4 0.00037 20.1 0.2 1.3 1 0 0 1 1 1 1 IncA protein GAS PF13851.1 gi|307596265|ref|YP_003902582.1| - 0.0037 16.4 1.2 0.0051 16.0 0.9 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.2 gi|307596265|ref|YP_003902582.1| - 0.028 14.2 0.5 0.04 13.7 0.3 1.1 1 0 0 1 1 1 0 Tropomyosin like BLOC1_2 PF10046.4 gi|307596265|ref|YP_003902582.1| - 0.035 14.2 3.9 0.054 13.6 2.7 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HemX PF04375.9 gi|307596265|ref|YP_003902582.1| - 0.046 12.3 0.1 0.067 11.7 0.1 1.2 1 0 0 1 1 1 0 HemX ADIP PF11559.3 gi|307596265|ref|YP_003902582.1| - 0.048 13.5 1.6 0.074 12.9 1.1 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DivIC PF04977.10 gi|307596265|ref|YP_003902582.1| - 0.051 13.0 0.3 0.099 12.1 0.2 1.4 1 0 0 1 1 1 0 Septum formation initiator rRNA_proc-arch PF13234.1 gi|307596265|ref|YP_003902582.1| - 0.052 12.7 1.5 0.093 11.8 1.1 1.3 1 0 0 1 1 1 0 rRNA-processing arch domain DUF3450 PF11932.3 gi|307596265|ref|YP_003902582.1| - 0.057 12.6 0.2 0.082 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Taxilin PF09728.4 gi|307596265|ref|YP_003902582.1| - 0.066 12.2 0.3 0.091 11.8 0.2 1.0 1 0 0 1 1 1 0 Myosin-like coiled-coil protein DUF4446 PF14584.1 gi|307596265|ref|YP_003902582.1| - 0.083 12.7 0.3 0.14 12.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) HOOK PF05622.7 gi|307596265|ref|YP_003902582.1| - 0.085 10.6 0.0 0.12 10.2 0.0 1.0 1 0 0 1 1 1 0 HOOK protein DUF3552 PF12072.3 gi|307596265|ref|YP_003902582.1| - 0.09 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF904 PF06005.7 gi|307596265|ref|YP_003902582.1| - 0.17 12.2 0.5 0.3 11.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Cep57_CLD_2 PF14197.1 gi|307596265|ref|YP_003902582.1| - 0.33 10.9 1.4 1.6 8.7 1.1 1.7 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 bZIP_1 PF00170.16 gi|307596265|ref|YP_003902582.1| - 0.36 10.8 2.0 0.5 10.3 1.4 1.2 1 0 0 1 1 1 0 bZIP transcription factor bZIP_2 PF07716.10 gi|307596265|ref|YP_003902582.1| - 0.78 9.6 1.7 2.7 7.8 0.2 2.0 2 0 0 2 2 2 0 Basic region leucine zipper T4SS PF07996.6 gi|307596265|ref|YP_003902582.1| - 9.4 6.0 12.8 1.9e+02 1.7 8.9 2.2 1 1 0 1 1 1 0 Type IV secretion system proteins Fer4 PF00037.22 gi|307596266|ref|YP_003902583.1| - 1.2e-21 75.3 38.6 5.2e-08 32.1 1.5 5.0 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|307596266|ref|YP_003902583.1| - 6.4e-21 74.4 28.4 2.1e-09 37.5 8.5 3.6 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307596266|ref|YP_003902583.1| - 4.6e-17 62.0 26.5 3.1e-08 33.7 5.2 4.1 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307596266|ref|YP_003902583.1| - 2.9e-14 52.6 46.3 1.1e-07 31.6 4.2 4.0 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307596266|ref|YP_003902583.1| - 3.2e-14 52.0 46.9 6e-06 25.8 0.7 5.4 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307596266|ref|YP_003902583.1| - 2.8e-13 49.4 32.5 6.9e-08 32.1 5.4 3.9 3 1 1 4 4 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307596266|ref|YP_003902583.1| - 2.9e-13 50.3 23.7 0.0013 19.3 0.2 5.0 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|307596266|ref|YP_003902583.1| - 2.9e-10 40.4 22.0 0.032 14.6 1.7 5.5 5 0 0 5 5 5 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307596266|ref|YP_003902583.1| - 9e-09 34.7 35.4 0.00017 21.3 1.9 5.1 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|307596266|ref|YP_003902583.1| - 1.1e-07 31.7 31.0 0.00076 19.4 6.6 4.1 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307596266|ref|YP_003902583.1| - 1.1e-06 29.0 29.2 0.0074 16.8 0.6 4.7 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|307596266|ref|YP_003902583.1| - 1.3e-05 25.4 31.7 0.072 13.4 1.9 5.0 3 2 0 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|307596266|ref|YP_003902583.1| - 0.00098 19.2 46.9 0.013 15.7 1.1 5.5 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_13 PF13370.1 gi|307596266|ref|YP_003902583.1| - 0.0024 18.1 29.8 0.11 12.8 0.9 5.1 4 1 1 5 5 4 3 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|307596266|ref|YP_003902583.1| - 0.0074 16.7 4.8 0.0074 16.7 3.4 5.9 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_11 PF13247.1 gi|307596266|ref|YP_003902583.1| - 0.0081 16.0 15.5 0.74 9.7 0.1 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Nitrate_red_del PF02613.10 gi|307596267|ref|YP_003902584.1| - 2.7e-09 36.9 0.0 5.1e-09 36.0 0.0 1.5 2 0 0 2 2 2 1 Nitrate reductase delta subunit Fer4_11 PF13247.1 gi|307596268|ref|YP_003902585.1| - 7.1e-26 89.9 6.3 7.1e-26 89.9 4.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307596268|ref|YP_003902585.1| - 1.3e-18 67.0 8.7 1.6e-09 38.0 0.0 3.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307596268|ref|YP_003902585.1| - 9.4e-14 51.4 18.8 1.4e-05 25.2 2.7 3.8 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307596268|ref|YP_003902585.1| - 3.4e-13 48.5 30.0 1.5e-06 27.5 4.2 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307596268|ref|YP_003902585.1| - 1.9e-09 37.1 25.3 5.6e-06 26.0 8.0 3.7 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307596268|ref|YP_003902585.1| - 1.9e-09 36.9 35.0 1.2e-05 24.9 3.0 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_3 PF12798.2 gi|307596268|ref|YP_003902585.1| - 9.3e-09 35.2 35.4 0.0048 17.3 4.4 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|307596268|ref|YP_003902585.1| - 1e-08 34.6 37.1 1.3e-05 24.7 2.1 4.6 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|307596268|ref|YP_003902585.1| - 2.4e-07 30.5 35.2 0.00016 21.7 2.2 4.5 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|307596268|ref|YP_003902585.1| - 4.7e-07 29.7 20.5 0.002 18.1 0.7 3.4 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307596268|ref|YP_003902585.1| - 6e-06 26.5 19.7 0.015 15.6 1.1 4.2 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307596268|ref|YP_003902585.1| - 1.8e-05 25.3 19.6 0.12 13.1 0.6 4.3 3 1 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|307596268|ref|YP_003902585.1| - 0.00017 21.3 24.5 0.00052 19.8 6.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307596268|ref|YP_003902585.1| - 0.22 11.9 28.1 0.16 12.3 2.6 4.2 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307596268|ref|YP_003902585.1| - 2.3 8.8 18.4 0.19 12.3 0.9 3.8 4 0 0 4 4 4 0 4Fe-4S single cluster domain Molydop_binding PF01568.16 gi|307596269|ref|YP_003902586.1| - 9.2e-18 64.0 0.0 3.3e-17 62.3 0.0 2.0 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.4 gi|307596269|ref|YP_003902586.1| - 0.00025 20.8 3.2 0.00065 19.5 1.4 2.4 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence NrfD PF03916.9 gi|307596270|ref|YP_003902587.1| - 1.4e-24 87.0 38.8 2.7e-24 86.1 26.9 1.3 1 1 0 1 1 1 1 Polysulphide reductase, NrfD TrmB PF01978.14 gi|307596271|ref|YP_003902588.1| - 0.00013 21.5 0.5 0.0095 15.6 0.0 2.6 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|307596271|ref|YP_003902588.1| - 0.0031 17.2 1.2 0.0072 16.1 0.2 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|307596271|ref|YP_003902588.1| - 0.0063 16.0 0.1 0.013 15.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|307596271|ref|YP_003902588.1| - 0.038 14.3 0.0 1.9 8.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|307596271|ref|YP_003902588.1| - 0.044 13.4 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 HTH domain FUR PF01475.14 gi|307596271|ref|YP_003902588.1| - 0.12 12.2 0.1 0.22 11.4 0.1 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_45 PF14947.1 gi|307596272|ref|YP_003902589.1| - 0.0031 17.2 0.1 0.0063 16.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.1 gi|307596272|ref|YP_003902589.1| - 0.033 14.2 0.0 0.094 12.8 0.0 1.8 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_IclR PF09339.5 gi|307596272|ref|YP_003902589.1| - 0.1 12.1 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DoxD PF04173.8 gi|307596273|ref|YP_003902590.1| - 1.6e-60 203.6 4.4 1.8e-60 203.4 3.1 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.7 gi|307596273|ref|YP_003902590.1| - 0.00057 20.2 6.2 0.00057 20.2 4.3 2.0 2 1 0 2 2 2 1 DoxX GAS2 PF02187.12 gi|307596273|ref|YP_003902590.1| - 0.12 12.1 0.0 16 5.3 0.0 2.3 2 0 0 2 2 2 0 Growth-Arrest-Specific Protein 2 Domain DoxA PF07680.6 gi|307596274|ref|YP_003902591.1| - 6.1e-38 129.4 0.4 7.1e-38 129.2 0.3 1.0 1 0 0 1 1 1 1 TQO small subunit DoxA PaREP1 PF05942.6 gi|307596275|ref|YP_003902592.1| - 1.3e-27 95.9 3.9 1.6e-27 95.6 2.7 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Herpes_UL36 PF03586.8 gi|307596275|ref|YP_003902592.1| - 0.011 14.7 0.1 0.016 14.3 0.1 1.3 1 0 0 1 1 1 0 Herpesvirus UL36 tegument protein SMC_hinge PF06470.8 gi|307596275|ref|YP_003902592.1| - 0.057 13.3 0.1 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 SMC proteins Flexible Hinge Domain ERK-JNK_inhib PF15002.1 gi|307596275|ref|YP_003902592.1| - 0.13 11.5 0.2 10 5.3 0.0 2.1 2 0 0 2 2 2 0 ERK and JNK pathways, inhibitor ScdA_N PF04405.9 gi|307596275|ref|YP_003902592.1| - 0.15 11.4 0.3 0.46 9.9 0.0 1.9 2 0 0 2 2 2 0 Domain of Unknown function (DUF542) TPR_14 PF13428.1 gi|307596275|ref|YP_003902592.1| - 5.9 7.8 6.8 57 4.7 1.5 3.3 2 1 1 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|307596276|ref|YP_003902593.1| - 0.12 12.7 1.0 0.13 12.6 0.7 1.2 1 1 0 1 1 1 0 Nucleotidyltransferase domain TatC PF00902.13 gi|307596278|ref|YP_003902595.1| - 9.2e-38 129.7 30.7 1.9e-37 128.7 21.3 1.5 1 1 0 1 1 1 1 Sec-independent protein translocase protein (TatC) HTH_1 PF00126.22 gi|307596279|ref|YP_003902596.1| - 1.6e-13 50.1 0.0 2.8e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.1 gi|307596279|ref|YP_003902596.1| - 1.7e-05 24.9 0.0 2e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|307596279|ref|YP_003902596.1| - 0.00028 20.4 0.0 0.00049 19.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|307596279|ref|YP_003902596.1| - 0.00076 19.4 0.1 0.0014 18.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|307596279|ref|YP_003902596.1| - 0.016 14.9 0.0 0.031 14.1 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_11 PF08279.7 gi|307596279|ref|YP_003902596.1| - 0.025 14.1 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_8 PF02954.14 gi|307596279|ref|YP_003902596.1| - 0.027 13.9 0.0 0.061 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_24 PF13412.1 gi|307596279|ref|YP_003902596.1| - 0.051 12.9 0.0 0.25 10.7 0.0 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.1 gi|307596279|ref|YP_003902596.1| - 0.06 12.5 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Rho_N PF07498.7 gi|307596280|ref|YP_003902597.1| - 0.00023 20.8 0.1 0.0014 18.2 0.1 2.1 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain GCN5L1 PF06320.8 gi|307596280|ref|YP_003902597.1| - 0.016 15.0 0.6 0.067 13.0 0.1 1.9 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF2089 PF09862.4 gi|307596280|ref|YP_003902597.1| - 0.057 13.2 0.2 11 5.8 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) HTH_23 PF13384.1 gi|307596280|ref|YP_003902597.1| - 0.084 12.5 0.1 1.7 8.4 0.0 2.6 2 1 0 2 2 2 0 Homeodomain-like domain DUF4312 PF14189.1 gi|307596280|ref|YP_003902597.1| - 0.12 12.2 0.1 0.83 9.5 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4312) DUF187 PF02638.10 gi|307596280|ref|YP_003902597.1| - 0.12 11.2 0.1 0.15 10.9 0.1 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase like GH101 CcdA PF07362.7 gi|307596280|ref|YP_003902597.1| - 0.2 11.5 3.2 0.23 11.3 0.1 2.1 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA MttA_Hcf106 PF02416.11 gi|307596281|ref|YP_003902598.1| - 2.8e-12 45.5 0.5 1.2e-11 43.4 0.3 2.0 1 1 0 1 1 1 1 mttA/Hcf106 family Rho_N PF07498.7 gi|307596281|ref|YP_003902598.1| - 3.9e-05 23.3 0.1 0.0017 18.0 0.0 2.4 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain Hom_end PF05204.9 gi|307596281|ref|YP_003902598.1| - 0.011 15.7 0.1 2 8.3 0.0 2.3 1 1 1 2 2 2 0 Homing endonuclease Sigma70_r3 PF04539.11 gi|307596281|ref|YP_003902598.1| - 0.027 14.3 0.3 1 9.2 0.0 2.4 2 0 0 2 2 2 0 Sigma-70 region 3 SAP PF02037.22 gi|307596281|ref|YP_003902598.1| - 0.048 13.1 0.1 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 SAP domain SASP PF00269.15 gi|307596281|ref|YP_003902598.1| - 0.15 11.9 0.0 15 5.5 0.0 2.5 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type AhpC-TSA PF00578.16 gi|307596283|ref|YP_003902600.1| - 6.4e-32 109.8 0.0 1.3e-31 108.8 0.0 1.5 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.5 gi|307596283|ref|YP_003902600.1| - 2.8e-17 62.6 0.0 3.8e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|307596283|ref|YP_003902600.1| - 3e-11 42.7 0.0 5.2e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF126 PF01989.11 gi|307596284|ref|YP_003902601.1| - 1.8e-25 88.4 0.8 2.9e-25 87.7 0.6 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 SelB-wing_2 PF09106.6 gi|307596285|ref|YP_003902602.1| - 0.036 13.9 0.0 0.096 12.6 0.0 1.7 1 1 1 2 2 2 0 Elongation factor SelB, winged helix DUF1886 PF09171.5 gi|307596286|ref|YP_003902603.1| - 1.1e-74 250.5 0.0 1.3e-74 250.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) TCR_zetazeta PF11628.3 gi|307596287|ref|YP_003902604.1| - 0.23 10.9 0.3 0.23 10.9 0.2 2.3 2 0 0 2 2 2 0 T-cell surface glycoprotein CD3 zeta chain DUF986 PF06173.7 gi|307596287|ref|YP_003902604.1| - 0.32 10.7 3.2 0.56 10.0 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF986) Tom7 PF08038.7 gi|307596287|ref|YP_003902604.1| - 4 6.9 7.3 1.3 8.5 0.9 2.6 2 0 0 2 2 2 0 TOM7 family Peptidase_M50 PF02163.17 gi|307596288|ref|YP_003902605.1| - 2.6e-20 72.2 14.3 2.6e-20 72.2 9.9 3.2 2 1 0 2 2 2 1 Peptidase family M50 Tricorn_PDZ PF14685.1 gi|307596288|ref|YP_003902605.1| - 0.039 13.7 0.0 0.081 12.7 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease PDZ domain DUF2576 PF10845.3 gi|307596289|ref|YP_003902606.1| - 0.12 11.5 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) DUF2208 PF09973.4 gi|307596290|ref|YP_003902607.1| - 8.4e-26 90.6 16.4 8.2e-24 84.1 11.4 2.1 1 1 0 1 1 1 1 Predicted membrane protein (DUF2208) Peptidase_M56 PF05569.6 gi|307596290|ref|YP_003902607.1| - 0.0051 15.8 1.1 0.0094 14.9 0.8 1.4 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF106 PF01956.11 gi|307596290|ref|YP_003902607.1| - 0.036 13.5 8.8 0.07 12.6 5.8 1.8 1 1 0 1 1 1 0 Integral membrane protein DUF106 MerC PF03203.9 gi|307596290|ref|YP_003902607.1| - 2.3 8.6 6.8 4 7.8 1.8 2.3 2 1 0 2 2 2 0 MerC mercury resistance protein RseC_MucC PF04246.7 gi|307596290|ref|YP_003902607.1| - 7.5 6.1 7.1 0.41 10.2 0.2 2.3 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC Ribosomal_60s PF00428.14 gi|307596291|ref|YP_003902608.1| - 3.8e-14 52.8 30.7 6.1e-13 48.9 21.3 2.0 1 1 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|307596291|ref|YP_003902608.1| - 0.095 12.6 9.2 1.7 8.5 0.0 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain ECH PF00378.15 gi|307596293|ref|YP_003902610.1| - 1e-54 185.2 0.0 1.2e-54 185.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|307596293|ref|YP_003902610.1| - 0.042 14.0 0.0 0.087 12.9 0.0 1.5 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region AFOR_C PF01314.13 gi|307596294|ref|YP_003902611.1| - 5.4e-103 344.6 0.0 6.8e-103 344.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|307596294|ref|YP_003902611.1| - 9.8e-72 240.5 0.0 1.7e-71 239.7 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Ubie_methyltran PF01209.13 gi|307596295|ref|YP_003902612.1| - 5.3e-16 58.4 0.0 5.9e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|307596295|ref|YP_003902612.1| - 1.4e-08 35.1 0.0 1.9e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|307596295|ref|YP_003902612.1| - 0.0064 16.2 0.0 0.0088 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307596295|ref|YP_003902612.1| - 0.043 13.4 0.1 4.9 6.7 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307596295|ref|YP_003902612.1| - 0.081 13.5 0.0 0.14 12.7 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain PTH2 PF01981.11 gi|307596296|ref|YP_003902613.1| - 1.5e-42 143.9 0.0 1.7e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DAO PF01266.19 gi|307596297|ref|YP_003902614.1| - 3.9e-12 45.7 7.7 7.3e-11 41.5 5.4 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|307596297|ref|YP_003902614.1| - 2e-07 30.4 0.1 2.5e-05 23.5 0.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|307596297|ref|YP_003902614.1| - 3.9e-06 25.9 4.6 0.00067 18.6 1.7 2.1 2 0 0 2 2 2 2 FAD binding domain GIDA PF01134.17 gi|307596297|ref|YP_003902614.1| - 4.9e-06 25.6 6.0 0.0005 19.0 0.7 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|307596297|ref|YP_003902614.1| - 5.2e-06 26.3 1.2 1.4e-05 25.0 0.8 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|307596297|ref|YP_003902614.1| - 7e-06 25.3 1.1 7e-06 25.3 0.7 2.5 3 0 0 3 3 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|307596297|ref|YP_003902614.1| - 4.6e-05 22.6 1.5 7.4e-05 21.9 1.0 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|307596297|ref|YP_003902614.1| - 0.00023 19.7 0.4 0.00037 19.0 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|307596297|ref|YP_003902614.1| - 0.00037 20.4 0.4 0.00063 19.6 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|307596297|ref|YP_003902614.1| - 0.0048 15.5 0.7 1.1 7.7 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Amino_oxidase PF01593.19 gi|307596297|ref|YP_003902614.1| - 0.048 12.7 0.5 0.25 10.3 0.4 2.0 1 1 0 1 1 1 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|307596297|ref|YP_003902614.1| - 0.052 12.9 1.0 0.081 12.3 0.7 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|307596297|ref|YP_003902614.1| - 0.16 10.8 1.9 0.98 8.2 0.6 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|307596297|ref|YP_003902614.1| - 0.74 9.8 2.7 1.6 8.7 1.6 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ROK PF00480.15 gi|307596298|ref|YP_003902615.1| - 1.6e-37 129.0 1.2 2.1e-37 128.6 0.8 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|307596298|ref|YP_003902615.1| - 0.00079 18.8 0.1 0.062 12.5 0.1 2.3 1 1 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|307596298|ref|YP_003902615.1| - 0.024 13.9 0.1 0.034 13.4 0.1 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Cas_Cas4 PF01930.12 gi|307596299|ref|YP_003902616.1| - 2.9e-09 37.0 0.0 4.7e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|307596299|ref|YP_003902616.1| - 3.3e-08 33.2 0.0 9.5e-08 31.7 0.0 1.8 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.1 gi|307596299|ref|YP_003902616.1| - 0.012 15.3 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Usp PF00582.21 gi|307596300|ref|YP_003902617.1| - 3.1e-36 124.6 0.1 3.5e-36 124.4 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|307596300|ref|YP_003902617.1| - 0.0046 16.2 0.1 0.14 11.3 0.0 2.0 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel DXP_reductoisom PF02670.11 gi|307596300|ref|YP_003902617.1| - 0.011 16.2 0.2 0.015 15.8 0.1 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Acetyltransf_1 PF00583.19 gi|307596300|ref|YP_003902617.1| - 0.047 13.7 0.1 12 6.0 0.0 2.3 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family MS_channel PF00924.13 gi|307596301|ref|YP_003902618.1| - 1.9e-10 40.4 0.7 1.9e-10 40.4 0.5 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF454 PF04304.8 gi|307596301|ref|YP_003902618.1| - 2 8.5 11.9 2.8 8.0 1.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF454) TrkA_N PF02254.13 gi|307596302|ref|YP_003902619.1| - 4.3e-24 84.7 1.3 7.4e-24 83.9 0.9 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|307596302|ref|YP_003902619.1| - 3.7e-11 42.4 0.5 2.4e-10 39.8 0.1 2.3 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|307596302|ref|YP_003902619.1| - 1.5e-05 25.1 0.6 3.4e-05 24.0 0.2 1.7 2 1 0 2 2 2 1 Putative NAD(P)-binding dCMP_cyt_deam_1 PF00383.17 gi|307596303|ref|YP_003902620.1| - 5.6e-16 58.0 0.0 6.8e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|307596303|ref|YP_003902620.1| - 1e-07 31.9 0.0 1.4e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|307596303|ref|YP_003902620.1| - 0.0023 17.3 1.1 0.76 9.1 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DUF1610 PF07754.6 gi|307596304|ref|YP_003902621.1| - 1.2e-12 47.6 22.2 1.2e-08 34.8 3.6 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|307596304|ref|YP_003902621.1| - 0.00031 20.1 10.8 0.0032 16.8 4.0 3.8 2 2 1 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|307596304|ref|YP_003902621.1| - 0.00053 19.7 11.7 0.059 13.1 8.1 2.3 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|307596304|ref|YP_003902621.1| - 0.00081 18.5 16.0 0.15 11.2 0.2 3.9 4 0 0 4 4 4 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|307596304|ref|YP_003902621.1| - 0.0054 16.4 12.2 0.33 10.7 0.1 4.0 2 1 2 4 4 4 1 PhnA Zinc-Ribbon C1_3 PF07649.7 gi|307596304|ref|YP_003902621.1| - 0.01 15.8 12.0 0.053 13.5 1.7 2.4 2 1 0 2 2 2 0 C1-like domain OrfB_Zn_ribbon PF07282.6 gi|307596304|ref|YP_003902621.1| - 0.029 14.0 11.6 0.041 13.5 0.6 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|307596304|ref|YP_003902621.1| - 0.029 14.0 2.0 0.029 14.0 1.4 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family PolC_DP2 PF03833.8 gi|307596304|ref|YP_003902621.1| - 0.031 11.9 5.7 0.036 11.7 3.9 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-RING_5 PF14634.1 gi|307596304|ref|YP_003902621.1| - 0.031 13.9 11.6 1.2 8.9 8.1 2.7 1 1 0 1 1 1 0 zinc-RING finger domain Zn_Tnp_IS91 PF14319.1 gi|307596304|ref|YP_003902621.1| - 0.051 13.0 0.2 0.051 13.0 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-binding domain C1_1 PF00130.17 gi|307596304|ref|YP_003902621.1| - 0.06 13.0 9.8 0.88 9.3 3.7 2.6 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-MYND PF01753.13 gi|307596304|ref|YP_003902621.1| - 0.19 11.6 8.3 0.63 9.9 0.1 2.3 1 1 1 2 2 2 0 MYND finger zf-UBP PF02148.14 gi|307596304|ref|YP_003902621.1| - 0.19 11.8 6.2 1.4 9.0 0.5 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Desulfoferrod_N PF06397.7 gi|307596304|ref|YP_003902621.1| - 0.2 11.0 12.6 0.75 9.2 0.3 3.6 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain Zn_Tnp_IS1595 PF12760.2 gi|307596304|ref|YP_003902621.1| - 0.23 11.3 22.4 3.6e+02 1.0 15.5 3.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|307596304|ref|YP_003902621.1| - 0.27 10.4 12.9 0.53 9.5 5.0 3.1 2 1 0 2 2 2 0 Transcription factor zinc-finger NOB1_Zn_bind PF08772.6 gi|307596304|ref|YP_003902621.1| - 0.49 10.2 9.2 0.046 13.5 2.6 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-H2C2_2 PF13465.1 gi|307596304|ref|YP_003902621.1| - 0.75 10.1 20.4 0.94 9.8 1.0 4.1 2 2 2 4 4 4 0 Zinc-finger double domain NMD3 PF04981.8 gi|307596304|ref|YP_003902621.1| - 0.76 8.8 7.6 0.93 8.5 5.3 1.0 1 0 0 1 1 1 0 NMD3 family zf-NADH-PPase PF09297.6 gi|307596304|ref|YP_003902621.1| - 0.92 9.0 14.4 0.11 12.0 1.8 3.5 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain NinF PF05810.7 gi|307596304|ref|YP_003902621.1| - 1.2 8.9 5.7 1.7 8.5 1.0 2.2 1 1 1 2 2 2 0 NinF protein zf-C2H2 PF00096.21 gi|307596304|ref|YP_003902621.1| - 1.2 9.5 17.8 13 6.3 0.5 4.1 3 1 1 4 4 4 0 Zinc finger, C2H2 type zf-trcl PF13451.1 gi|307596304|ref|YP_003902621.1| - 1.8 8.2 0.1 1.8 8.2 0.0 3.7 3 1 1 4 4 4 0 Probable zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|307596304|ref|YP_003902621.1| - 1.9 7.8 16.1 0.76 9.1 3.2 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding Sgf11 PF08209.6 gi|307596304|ref|YP_003902621.1| - 2.9 7.2 16.9 1.3 8.3 0.2 4.0 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-BED PF02892.10 gi|307596304|ref|YP_003902621.1| - 3.6 7.4 8.2 2.2 8.1 1.9 2.5 2 1 1 3 3 3 0 BED zinc finger zf-AN1 PF01428.11 gi|307596304|ref|YP_003902621.1| - 3.8 7.4 11.9 9 6.2 2.1 2.7 2 1 1 3 3 3 0 AN1-like Zinc finger zf-CHY PF05495.7 gi|307596304|ref|YP_003902621.1| - 4.2 7.5 8.7 16 5.7 6.0 1.9 1 1 0 1 1 1 0 CHY zinc finger Nudix_N_2 PF14803.1 gi|307596304|ref|YP_003902621.1| - 4.3 7.0 13.2 5.8 6.6 0.1 4.0 3 1 0 3 3 3 0 Nudix N-terminal zf-FPG_IleRS PF06827.9 gi|307596304|ref|YP_003902621.1| - 4.5 7.0 18.6 1.4 8.6 2.5 3.6 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-HIT PF04438.11 gi|307596304|ref|YP_003902621.1| - 5.2 6.8 16.5 10 5.8 3.6 3.2 2 1 0 3 3 3 0 HIT zinc finger Ribosomal_L37ae PF01780.14 gi|307596304|ref|YP_003902621.1| - 5.9 6.8 9.2 19 5.2 4.4 2.7 1 1 0 1 1 1 0 Ribosomal L37ae protein family Zn_ribbon_recom PF13408.1 gi|307596304|ref|YP_003902621.1| - 6.2 7.1 11.8 11 6.4 8.1 1.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Tnp_zf-ribbon_2 PF13842.1 gi|307596304|ref|YP_003902621.1| - 6.3 7.3 13.7 8.3e+02 0.5 9.6 2.8 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon FYVE PF01363.16 gi|307596304|ref|YP_003902621.1| - 6.5 6.7 10.6 30 4.6 7.3 2.0 1 1 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.1 gi|307596304|ref|YP_003902621.1| - 6.9 7.2 17.2 5.3 7.6 0.4 4.1 3 1 1 4 4 4 0 C2H2-type zinc finger zf-B_box PF00643.19 gi|307596304|ref|YP_003902621.1| - 7.4 6.5 11.0 33 4.4 4.5 2.8 1 1 1 2 2 2 0 B-box zinc finger zinc_ribbon_5 PF13719.1 gi|307596304|ref|YP_003902621.1| - 8.7 6.0 12.5 16 5.2 0.1 3.9 4 0 0 4 4 4 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|307596304|ref|YP_003902621.1| - 9.6 5.7 12.9 1.3 8.5 0.5 3.1 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF95 PF01944.12 gi|307596306|ref|YP_003902623.1| - 1.9e-15 56.8 18.4 2.7e-15 56.4 12.7 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 ATP-synt_D PF01813.12 gi|307596307|ref|YP_003902624.1| - 2.2e-33 115.4 1.8 2.4e-33 115.3 1.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D MMR_HSR1 PF01926.18 gi|307596308|ref|YP_003902625.1| - 1.5e-20 73.2 0.1 3e-15 56.1 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|307596308|ref|YP_003902625.1| - 1.7e-09 37.1 0.3 3.4e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|307596308|ref|YP_003902625.1| - 4.3e-09 36.0 0.1 2.6e-07 30.2 0.0 2.9 2 2 0 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|307596308|ref|YP_003902625.1| - 2.3e-06 27.5 0.3 0.016 15.0 0.0 3.1 3 0 0 3 3 3 2 Dynamin family Arf PF00025.16 gi|307596308|ref|YP_003902625.1| - 0.00012 21.3 0.0 0.015 14.5 0.0 2.2 1 1 1 2 2 2 1 ADP-ribosylation factor family Miro PF08477.8 gi|307596308|ref|YP_003902625.1| - 0.00057 20.3 0.0 0.03 14.8 0.0 2.3 2 0 0 2 2 2 1 Miro-like protein DUF258 PF03193.11 gi|307596308|ref|YP_003902625.1| - 0.00084 18.5 0.0 0.0017 17.5 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AIG1 PF04548.11 gi|307596308|ref|YP_003902625.1| - 0.001 18.2 0.0 0.017 14.2 0.0 2.1 2 0 0 2 2 2 1 AIG1 family cobW PF02492.14 gi|307596308|ref|YP_003902625.1| - 0.0086 15.5 0.0 0.12 11.8 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|307596308|ref|YP_003902625.1| - 0.03 13.1 0.2 0.19 10.4 0.0 2.1 1 1 1 2 2 2 0 ArgK protein AAA_18 PF13238.1 gi|307596308|ref|YP_003902625.1| - 0.039 14.2 0.0 0.19 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Ras PF00071.17 gi|307596308|ref|YP_003902625.1| - 0.045 13.1 0.0 7.8 5.8 0.0 2.1 2 0 0 2 2 2 0 Ras family AAA_17 PF13207.1 gi|307596308|ref|YP_003902625.1| - 0.049 14.4 0.1 0.24 12.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|307596308|ref|YP_003902625.1| - 0.071 12.8 0.1 0.17 11.5 0.0 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CdhD PF03599.11 gi|307596308|ref|YP_003902625.1| - 0.1 11.0 0.0 0.2 10.1 0.0 1.4 2 0 0 2 2 2 0 CO dehydrogenase/acetyl-CoA synthase delta subunit NTPase_1 PF03266.10 gi|307596308|ref|YP_003902625.1| - 0.13 11.9 0.3 5.5 6.6 0.0 2.4 2 1 0 2 2 2 0 NTPase DUF2819 PF10995.3 gi|307596309|ref|YP_003902626.1| - 0.13 10.9 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2819) TraX PF05857.6 gi|307596310|ref|YP_003902627.1| - 5.7 6.5 11.6 0.61 9.6 4.4 2.0 2 1 0 2 2 2 0 TraX protein zf-C4_Topoisom PF01396.14 gi|307596311|ref|YP_003902628.1| - 0.02 14.4 0.1 0.037 13.5 0.1 1.4 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-RING_4 PF14570.1 gi|307596311|ref|YP_003902628.1| - 0.31 10.6 2.9 4.9 6.8 0.1 2.1 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain Mrr_cat PF04471.7 gi|307596312|ref|YP_003902629.1| - 0.0012 18.6 0.0 0.0026 17.5 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease NERD PF08378.6 gi|307596312|ref|YP_003902629.1| - 0.0073 16.5 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 Nuclease-related domain Hjc PF01870.13 gi|307596312|ref|YP_003902629.1| - 0.022 14.3 0.1 0.036 13.6 0.1 1.4 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) DUF498 PF04430.9 gi|307596312|ref|YP_003902629.1| - 0.051 13.1 0.1 3.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) GTP_EFTU_D4 PF14578.1 gi|307596313|ref|YP_003902630.1| - 4.3e-28 96.7 2.5 1.5e-27 95.0 1.8 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.22 gi|307596313|ref|YP_003902630.1| - 1.2e-27 96.6 0.0 7.9e-27 93.9 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|307596313|ref|YP_003902630.1| - 9.7e-18 64.0 0.7 2.3e-17 62.8 0.2 1.8 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|307596313|ref|YP_003902630.1| - 4.2e-10 39.5 8.8 2.2e-09 37.2 0.1 3.6 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|307596313|ref|YP_003902630.1| - 9.4e-05 22.3 0.0 0.00021 21.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|307596313|ref|YP_003902630.1| - 0.0025 18.2 0.0 0.0081 16.6 0.0 1.9 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|307596313|ref|YP_003902630.1| - 0.024 14.0 0.0 0.29 10.5 0.0 2.2 1 1 0 1 1 1 0 Ras family DUF1488 PF07369.6 gi|307596313|ref|YP_003902630.1| - 0.05 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1488) PALP PF00291.20 gi|307596314|ref|YP_003902631.1| - 2.5e-33 115.6 0.0 3e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme AAA_14 PF13173.1 gi|307596315|ref|YP_003902632.1| - 6.8e-25 87.4 0.2 2.1e-24 85.8 0.1 1.8 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|307596315|ref|YP_003902632.1| - 2.3e-08 34.0 0.7 1.6e-07 31.2 0.1 2.0 2 0 0 2 2 2 1 Archaeal ATPase HTH_11 PF08279.7 gi|307596315|ref|YP_003902632.1| - 1.4e-05 24.6 0.2 3.6e-05 23.3 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|307596315|ref|YP_003902632.1| - 2.6e-05 23.4 0.4 5.9e-05 22.3 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4143 PF13635.1 gi|307596315|ref|YP_003902632.1| - 0.00033 20.7 0.0 0.00052 20.1 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA PF00004.24 gi|307596315|ref|YP_003902632.1| - 0.0037 17.4 0.0 0.008 16.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_36 PF13730.1 gi|307596315|ref|YP_003902632.1| - 0.0063 16.6 0.1 0.019 15.0 0.1 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain RNA_helicase PF00910.17 gi|307596315|ref|YP_003902632.1| - 0.0086 16.2 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 1 RNA helicase Cdc6_C PF09079.6 gi|307596315|ref|YP_003902632.1| - 0.0089 15.7 0.0 0.025 14.2 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal HTH_23 PF13384.1 gi|307596315|ref|YP_003902632.1| - 0.011 15.3 0.0 0.036 13.7 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|307596315|ref|YP_003902632.1| - 0.011 15.7 0.0 0.035 14.1 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Mga PF08280.6 gi|307596315|ref|YP_003902632.1| - 0.016 14.9 0.1 0.061 13.0 0.1 2.0 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.14 gi|307596315|ref|YP_003902632.1| - 0.016 15.1 0.1 0.032 14.1 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.14 gi|307596315|ref|YP_003902632.1| - 0.02 14.1 0.0 0.046 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_10 PF04967.7 gi|307596315|ref|YP_003902632.1| - 0.021 14.3 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|307596315|ref|YP_003902632.1| - 0.021 14.3 0.0 0.047 13.2 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain AAA_16 PF13191.1 gi|307596315|ref|YP_003902632.1| - 0.024 14.6 0.0 0.046 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NUMOD1 PF07453.8 gi|307596315|ref|YP_003902632.1| - 0.025 14.3 0.4 0.067 13.0 0.3 1.8 1 0 0 1 1 1 0 NUMOD1 domain AAA_22 PF13401.1 gi|307596315|ref|YP_003902632.1| - 0.046 13.8 0.0 0.21 11.7 0.0 2.0 1 1 1 2 2 2 0 AAA domain HTH_Tnp_ISL3 PF13542.1 gi|307596315|ref|YP_003902632.1| - 0.08 12.1 0.0 0.33 10.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 GntR PF00392.16 gi|307596315|ref|YP_003902632.1| - 0.087 12.2 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MobB PF03205.9 gi|307596315|ref|YP_003902632.1| - 0.14 11.8 0.0 0.36 10.5 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PMBR PF09373.5 gi|307596315|ref|YP_003902632.1| - 1.1 9.2 6.0 1 9.4 0.1 3.6 4 0 0 4 4 3 0 Pseudomurein-binding repeat HpaB_N PF11794.3 gi|307596316|ref|YP_003902633.1| - 2.1e-76 256.8 2.6 2.9e-76 256.3 1.8 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|307596316|ref|YP_003902633.1| - 8.6e-47 158.6 1.0 1.2e-46 158.1 0.7 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.14 gi|307596316|ref|YP_003902633.1| - 0.054 13.0 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.19 gi|307596317|ref|YP_003902634.1| - 8.1e-45 152.5 0.6 1.6e-44 151.6 0.4 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|307596317|ref|YP_003902634.1| - 8.6e-29 100.3 0.1 2e-28 99.2 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|307596317|ref|YP_003902634.1| - 2.5e-21 76.3 0.1 3.6e-21 75.8 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|307596317|ref|YP_003902634.1| - 6.6e-17 60.7 0.1 4e-16 58.2 0.0 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|307596317|ref|YP_003902634.1| - 0.0015 17.9 0.1 0.0032 16.8 0.1 1.5 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal AMP-binding PF00501.23 gi|307596318|ref|YP_003902635.1| - 2.1e-82 276.7 0.0 2.5e-82 276.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|307596318|ref|YP_003902635.1| - 1.7e-17 64.1 0.2 3.7e-17 63.0 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Amidohydro_2 PF04909.9 gi|307596319|ref|YP_003902636.1| - 2.2e-17 63.5 0.0 3e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase Sec62 PF03839.11 gi|307596320|ref|YP_003902637.1| - 0.8 9.0 3.6 1.2 8.4 2.5 1.2 1 0 0 1 1 1 0 Translocation protein Sec62 MFS_1 PF07690.11 gi|307596321|ref|YP_003902638.1| - 8.3e-28 97.1 57.0 8.3e-28 97.1 39.5 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily OATP PF03137.15 gi|307596321|ref|YP_003902638.1| - 3.1 5.7 12.5 0.53 8.2 2.1 2.5 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family AA_permease PF00324.16 gi|307596322|ref|YP_003902639.1| - 6.5e-29 100.6 49.0 8.4e-29 100.2 34.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|307596322|ref|YP_003902639.1| - 2e-18 66.1 51.7 3.5e-18 65.3 35.8 1.4 1 1 0 1 1 1 1 Amino acid permease HCV_NS4a PF01006.15 gi|307596322|ref|YP_003902639.1| - 0.17 11.4 2.5 1.1 8.9 1.7 2.5 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a DUF364 PF04016.7 gi|307596324|ref|YP_003902641.1| - 5.1e-30 103.7 0.0 7.8e-30 103.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|307596324|ref|YP_003902641.1| - 5e-09 36.1 0.0 9.1e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) DUF473 PF04322.7 gi|307596324|ref|YP_003902641.1| - 0.082 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF473) DUF72 PF01904.13 gi|307596325|ref|YP_003902642.1| - 1.6e-42 145.8 0.0 1.9e-42 145.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Asp_protease_2 PF13650.1 gi|307596326|ref|YP_003902643.1| - 1.9e-05 25.0 0.0 2e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|307596326|ref|YP_003902643.1| - 0.00011 21.9 0.1 0.00012 21.8 0.0 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease PIN PF01850.16 gi|307596327|ref|YP_003902644.1| - 9.7e-13 48.5 0.2 1.1e-12 48.3 0.1 1.0 1 0 0 1 1 1 1 PIN domain RibD_C PF01872.12 gi|307596329|ref|YP_003902646.1| - 9.3e-57 191.8 0.0 1e-56 191.7 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Pox_VERT_large PF04441.8 gi|307596329|ref|YP_003902646.1| - 0.097 10.8 0.0 0.12 10.4 0.0 1.0 1 0 0 1 1 1 0 Poxvirus early transcription factor (VETF), large subunit DUF359 PF04019.7 gi|307596330|ref|YP_003902647.1| - 3.2e-29 100.7 0.0 4.3e-29 100.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) ADH_zinc_N PF00107.21 gi|307596330|ref|YP_003902647.1| - 0.053 13.0 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Prok-RING_2 PF14445.1 gi|307596332|ref|YP_003902649.1| - 0.028 14.3 0.2 0.028 14.3 0.2 1.8 2 0 0 2 2 2 0 Prokaryotic RING finger family 2 GFA PF04828.9 gi|307596332|ref|YP_003902649.1| - 0.038 13.9 0.1 0.86 9.5 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme TruD PF01142.13 gi|307596333|ref|YP_003902650.1| - 1.3e-83 280.7 0.0 1.1e-82 277.6 0.0 1.9 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) TH1 PF04858.8 gi|307596333|ref|YP_003902650.1| - 0.061 11.4 0.1 0.21 9.6 0.0 1.7 2 0 0 2 2 2 0 TH1 protein DUF89 PF01937.14 gi|307596336|ref|YP_003902653.1| - 2.7e-20 72.4 0.2 7e-18 64.5 0.1 2.1 1 1 0 1 1 1 1 Protein of unknown function DUF89 Oxidored_molyb PF00174.14 gi|307596337|ref|YP_003902654.1| - 3.7e-41 140.3 0.0 4.7e-41 140.0 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Linocin_M18 PF04454.7 gi|307596338|ref|YP_003902655.1| - 4.1e-49 166.7 0.0 5.4e-49 166.3 0.0 1.1 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.12 gi|307596338|ref|YP_003902655.1| - 2e-08 34.6 0.0 3.5e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Rubrerythrin DUF2202 PF09968.4 gi|307596338|ref|YP_003902655.1| - 0.0071 16.0 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Ferritin PF00210.19 gi|307596338|ref|YP_003902655.1| - 0.024 14.3 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Ferritin-like domain DUF2383 PF09537.5 gi|307596338|ref|YP_003902655.1| - 0.092 12.9 0.1 0.19 12.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) UPF0126 PF03458.8 gi|307596339|ref|YP_003902656.1| - 2e-44 149.1 28.7 7.5e-26 89.5 6.6 2.6 3 0 0 3 3 3 2 UPF0126 domain AAA PF00004.24 gi|307596341|ref|YP_003902658.1| - 1.6e-15 57.4 0.1 3.6e-14 53.1 0.0 2.7 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|307596341|ref|YP_003902658.1| - 8.1e-11 41.2 0.0 4.6e-06 25.6 0.0 2.4 3 0 0 3 3 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|307596341|ref|YP_003902658.1| - 2.8e-10 39.6 0.0 1.7e-08 33.7 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|307596341|ref|YP_003902658.1| - 4.2e-10 38.9 0.0 1e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus DNA_pol3_delta PF06144.8 gi|307596341|ref|YP_003902658.1| - 4.3e-08 32.8 0.0 9.5e-08 31.7 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_17 PF13207.1 gi|307596341|ref|YP_003902658.1| - 5.7e-07 30.3 0.2 4.7e-06 27.4 0.2 2.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|307596341|ref|YP_003902658.1| - 2e-06 27.7 0.0 4.2e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|307596341|ref|YP_003902658.1| - 4.9e-06 26.7 0.6 0.0005 20.2 0.0 3.3 2 1 1 4 4 3 1 AAA domain AAA_5 PF07728.9 gi|307596341|ref|YP_003902658.1| - 7.4e-06 25.7 0.2 7.3e-05 22.5 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|307596341|ref|YP_003902658.1| - 8.5e-06 25.6 0.0 1.7e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|307596341|ref|YP_003902658.1| - 2.3e-05 23.9 0.0 5.6e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF815 PF05673.8 gi|307596341|ref|YP_003902658.1| - 4.1e-05 22.6 0.0 0.00019 20.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RFC1 PF08519.7 gi|307596341|ref|YP_003902658.1| - 4.3e-05 23.3 0.0 6.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_16 PF13191.1 gi|307596341|ref|YP_003902658.1| - 4.6e-05 23.4 0.1 0.00032 20.7 0.0 2.4 2 1 2 4 4 2 1 AAA ATPase domain AAA_28 PF13521.1 gi|307596341|ref|YP_003902658.1| - 4.7e-05 23.4 0.0 0.00011 22.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|307596341|ref|YP_003902658.1| - 6.8e-05 22.5 0.2 0.00048 19.8 0.0 2.5 3 0 0 3 3 2 1 Part of AAA domain AAA_18 PF13238.1 gi|307596341|ref|YP_003902658.1| - 0.0001 22.6 0.4 0.00051 20.3 0.0 2.4 3 0 0 3 3 1 1 AAA domain Zeta_toxin PF06414.7 gi|307596341|ref|YP_003902658.1| - 0.00014 20.9 0.0 0.00027 20.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.7 gi|307596341|ref|YP_003902658.1| - 0.00017 21.2 0.0 0.11 12.0 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA_25 PF13481.1 gi|307596341|ref|YP_003902658.1| - 0.00071 19.0 0.0 0.0019 17.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain PPV_E1_C PF00519.12 gi|307596341|ref|YP_003902658.1| - 0.0033 16.1 0.0 0.013 14.1 0.0 1.8 2 0 0 2 2 2 1 Papillomavirus helicase Sigma54_activ_2 PF14532.1 gi|307596341|ref|YP_003902658.1| - 0.0035 17.3 0.0 0.014 15.4 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain MobB PF03205.9 gi|307596341|ref|YP_003902658.1| - 0.0044 16.7 0.0 0.011 15.4 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.11 gi|307596341|ref|YP_003902658.1| - 0.0051 16.0 0.0 0.017 14.3 0.0 1.8 2 0 0 2 2 1 1 PhoH-like protein Mg_chelatase PF01078.16 gi|307596341|ref|YP_003902658.1| - 0.0056 15.8 0.0 0.01 15.0 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|307596341|ref|YP_003902658.1| - 0.0095 15.0 0.0 0.039 13.0 0.0 2.0 2 0 0 2 2 2 1 KaiC ABC_tran PF00005.22 gi|307596341|ref|YP_003902658.1| - 0.012 15.9 0.1 0.045 14.0 0.0 1.9 2 0 0 2 2 2 0 ABC transporter Bac_DnaA PF00308.13 gi|307596341|ref|YP_003902658.1| - 0.012 15.2 0.0 0.07 12.7 0.0 2.1 1 1 0 1 1 1 0 Bacterial dnaA protein RNA_helicase PF00910.17 gi|307596341|ref|YP_003902658.1| - 0.016 15.3 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase T2SE PF00437.15 gi|307596341|ref|YP_003902658.1| - 0.018 13.9 0.0 0.048 12.5 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|307596341|ref|YP_003902658.1| - 0.02 13.7 0.0 0.062 12.1 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain PduV-EutP PF10662.4 gi|307596341|ref|YP_003902658.1| - 0.02 14.3 0.0 0.039 13.4 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ResIII PF04851.10 gi|307596341|ref|YP_003902658.1| - 0.021 14.6 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF258 PF03193.11 gi|307596341|ref|YP_003902658.1| - 0.03 13.5 0.0 0.08 12.1 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function, DUF258 Parvo_NS1 PF01057.12 gi|307596341|ref|YP_003902658.1| - 0.036 12.9 0.0 0.074 11.9 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 IPT PF01745.11 gi|307596341|ref|YP_003902658.1| - 0.041 13.0 0.0 0.08 12.1 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase Sigma54_activat PF00158.21 gi|307596341|ref|YP_003902658.1| - 0.043 13.3 0.0 0.12 11.8 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|307596341|ref|YP_003902658.1| - 0.046 13.3 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|307596341|ref|YP_003902658.1| - 0.051 13.4 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_30 PF13604.1 gi|307596341|ref|YP_003902658.1| - 0.054 13.0 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|307596341|ref|YP_003902658.1| - 0.093 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|307596341|ref|YP_003902658.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|307596341|ref|YP_003902658.1| - 0.1 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_11 PF13086.1 gi|307596341|ref|YP_003902658.1| - 0.13 11.8 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Rep_fac_C PF08542.6 gi|307596342|ref|YP_003902659.1| - 2e-20 72.5 0.0 6.1e-20 70.9 0.0 1.9 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|307596342|ref|YP_003902659.1| - 1.4e-17 64.0 0.0 4.6e-17 62.4 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|307596342|ref|YP_003902659.1| - 5.1e-17 62.0 0.0 8.7e-15 54.7 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|307596342|ref|YP_003902659.1| - 4.4e-10 39.0 0.0 1e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|307596342|ref|YP_003902659.1| - 4.7e-09 35.4 0.0 0.00026 19.8 0.0 2.2 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|307596342|ref|YP_003902659.1| - 9.9e-09 35.4 0.1 0.0045 17.1 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|307596342|ref|YP_003902659.1| - 1.2e-07 31.6 0.0 2e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307596342|ref|YP_003902659.1| - 7.9e-07 29.2 0.0 0.00053 20.0 0.0 2.7 3 1 1 4 4 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|307596342|ref|YP_003902659.1| - 1.7e-06 27.5 0.5 6e-06 25.7 0.0 2.2 2 2 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|307596342|ref|YP_003902659.1| - 7.7e-06 25.5 0.0 2.2e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|307596342|ref|YP_003902659.1| - 9.6e-06 25.3 0.0 1.8e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|307596342|ref|YP_003902659.1| - 3.5e-05 22.8 0.0 0.003 16.4 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|307596342|ref|YP_003902659.1| - 3.9e-05 23.4 0.0 0.11 12.1 0.0 2.2 1 1 1 2 2 2 2 Archaeal ATPase Mg_chelatase PF01078.16 gi|307596342|ref|YP_003902659.1| - 4e-05 22.8 0.0 0.0011 18.1 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|307596342|ref|YP_003902659.1| - 6e-05 22.5 0.0 0.00026 20.4 0.0 2.0 2 1 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|307596342|ref|YP_003902659.1| - 6.7e-05 21.7 0.0 0.0014 17.4 0.0 2.2 2 0 0 2 2 2 1 TIP49 C-terminus AAA_18 PF13238.1 gi|307596342|ref|YP_003902659.1| - 8.2e-05 22.9 0.0 0.0023 18.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|307596342|ref|YP_003902659.1| - 0.0001 22.0 0.1 0.00032 20.4 0.0 1.9 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|307596342|ref|YP_003902659.1| - 0.00018 20.8 0.7 0.064 12.4 0.0 2.4 1 1 1 2 2 2 1 PhoH-like protein AAA_17 PF13207.1 gi|307596342|ref|YP_003902659.1| - 0.00024 21.8 0.2 0.00087 20.1 0.0 2.1 2 1 1 3 3 1 1 AAA domain AAA_10 PF12846.2 gi|307596342|ref|YP_003902659.1| - 0.00031 20.3 0.4 0.22 10.9 0.0 2.5 1 1 0 2 2 2 1 AAA-like domain AAA_11 PF13086.1 gi|307596342|ref|YP_003902659.1| - 0.00035 20.2 0.0 0.00052 19.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|307596342|ref|YP_003902659.1| - 0.00047 19.7 0.0 0.00097 18.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DEAD PF00270.24 gi|307596342|ref|YP_003902659.1| - 0.00072 19.0 0.1 0.095 12.1 0.0 2.3 1 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|307596342|ref|YP_003902659.1| - 0.00086 19.1 0.0 0.0049 16.7 0.0 1.9 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit DUF815 PF05673.8 gi|307596342|ref|YP_003902659.1| - 0.001 18.0 0.0 0.0016 17.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DNA_pol3_delta PF06144.8 gi|307596342|ref|YP_003902659.1| - 0.0016 17.9 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_30 PF13604.1 gi|307596342|ref|YP_003902659.1| - 0.0031 17.1 1.5 0.024 14.2 0.1 2.6 2 1 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|307596342|ref|YP_003902659.1| - 0.0033 16.2 0.1 0.35 9.5 0.0 2.5 1 1 1 2 2 2 1 ArgK protein RNA_helicase PF00910.17 gi|307596342|ref|YP_003902659.1| - 0.004 17.3 0.0 0.01 16.0 0.0 1.8 1 1 0 1 1 1 1 RNA helicase KaiC PF06745.8 gi|307596342|ref|YP_003902659.1| - 0.0046 16.0 0.0 0.019 14.0 0.0 1.9 2 0 0 2 2 2 1 KaiC FtsK_SpoIIIE PF01580.13 gi|307596342|ref|YP_003902659.1| - 0.0064 15.9 0.1 0.042 13.3 0.0 2.2 1 1 1 2 2 2 1 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|307596342|ref|YP_003902659.1| - 0.0065 15.4 0.1 0.064 12.2 0.0 2.0 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.12 gi|307596342|ref|YP_003902659.1| - 0.0085 14.9 0.0 0.018 13.9 0.0 1.5 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|307596342|ref|YP_003902659.1| - 0.0093 14.8 0.0 0.013 14.3 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_33 PF13671.1 gi|307596342|ref|YP_003902659.1| - 0.012 15.5 0.0 0.029 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain DNA_pol3_gamma3 PF12169.3 gi|307596342|ref|YP_003902659.1| - 0.013 15.2 0.2 3.1 7.5 0.0 3.1 2 1 1 3 3 3 0 DNA polymerase III subunits gamma and tau domain III AAA_28 PF13521.1 gi|307596342|ref|YP_003902659.1| - 0.014 15.3 0.1 0.075 12.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|307596342|ref|YP_003902659.1| - 0.015 14.7 0.0 0.74 9.2 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain SNF2_N PF00176.18 gi|307596342|ref|YP_003902659.1| - 0.019 13.7 0.0 0.21 10.3 0.0 2.0 1 1 1 2 2 2 0 SNF2 family N-terminal domain Viral_helicase1 PF01443.13 gi|307596342|ref|YP_003902659.1| - 0.022 14.2 0.0 0.033 13.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PEPCK_ATP PF01293.15 gi|307596342|ref|YP_003902659.1| - 0.03 12.8 0.0 0.048 12.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Sigma54_activ_2 PF14532.1 gi|307596342|ref|YP_003902659.1| - 0.036 14.0 0.0 0.11 12.5 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_23 PF13476.1 gi|307596342|ref|YP_003902659.1| - 0.052 13.8 0.0 0.15 12.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|307596342|ref|YP_003902659.1| - 0.055 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|307596342|ref|YP_003902659.1| - 0.058 13.0 0.0 1 9.0 0.0 2.2 1 1 0 1 1 1 0 NACHT domain KTI12 PF08433.5 gi|307596342|ref|YP_003902659.1| - 0.063 12.4 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_2 PF07724.9 gi|307596342|ref|YP_003902659.1| - 0.087 12.7 0.0 0.3 10.9 0.0 1.9 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) ERCC4 PF02732.10 gi|307596342|ref|YP_003902659.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 ERCC4 domain Ribosomal_S7 PF00177.16 gi|307596343|ref|YP_003902660.1| - 1.4e-48 164.2 0.2 1.7e-48 163.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e RtcB PF01139.12 gi|307596344|ref|YP_003902661.1| - 1.8e-147 491.7 0.0 2.1e-147 491.5 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB MFS_1 PF07690.11 gi|307596347|ref|YP_003902664.1| - 1e-09 37.6 44.2 1e-09 37.6 30.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily GatB_N PF02934.10 gi|307596348|ref|YP_003902665.1| - 5.9e-77 258.3 0.0 8e-77 257.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|307596348|ref|YP_003902665.1| - 1.3e-11 44.3 0.2 1.3e-10 41.1 0.1 2.2 1 1 0 1 1 1 1 GatB domain GAD PF02938.9 gi|307596348|ref|YP_003902665.1| - 6e-10 39.1 0.0 1.3e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|307596348|ref|YP_003902665.1| - 0.035 13.9 0.2 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 Yqey-like protein Het-C PF07217.6 gi|307596348|ref|YP_003902665.1| - 0.046 11.9 0.0 0.065 11.4 0.0 1.1 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C SRI PF08236.6 gi|307596348|ref|YP_003902665.1| - 0.16 11.9 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 SRI (Set2 Rpb1 interacting) domain Sugar_tr PF00083.19 gi|307596349|ref|YP_003902666.1| - 2e-35 122.2 25.5 2.3e-35 122.0 17.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|307596349|ref|YP_003902666.1| - 6.6e-26 90.8 42.5 2e-22 79.4 16.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3501 PF12007.3 gi|307596350|ref|YP_003902667.1| - 2.3e-44 151.3 0.0 2.9e-44 151.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) Rubrerythrin PF02915.12 gi|307596351|ref|YP_003902668.1| - 1.5e-22 80.4 3.9 3.6e-22 79.1 2.5 1.8 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|307596351|ref|YP_003902668.1| - 4.4e-07 29.7 3.5 0.00064 19.4 0.2 2.1 1 1 1 2 2 2 2 Ferritin-like domain Ferritin_2 PF13668.1 gi|307596351|ref|YP_003902668.1| - 0.001 18.9 0.5 0.0016 18.3 0.3 1.3 1 1 0 1 1 1 1 Ferritin-like domain FUR PF01475.14 gi|307596352|ref|YP_003902669.1| - 2e-25 89.0 0.0 2.3e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_20 PF12840.2 gi|307596352|ref|YP_003902669.1| - 2.9e-05 23.7 0.0 5.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2551 PF10826.3 gi|307596352|ref|YP_003902669.1| - 7.6e-05 22.5 0.1 0.00019 21.2 0.0 1.6 2 1 0 2 2 2 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|307596352|ref|YP_003902669.1| - 0.0024 17.9 0.0 0.0036 17.3 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.5 gi|307596352|ref|YP_003902669.1| - 0.0094 15.5 0.1 0.024 14.2 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|307596352|ref|YP_003902669.1| - 0.012 15.2 0.0 0.048 13.3 0.0 2.0 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF4393 PF14337.1 gi|307596352|ref|YP_003902669.1| - 0.013 14.9 0.1 0.016 14.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) HTH_5 PF01022.15 gi|307596352|ref|YP_003902669.1| - 0.017 14.8 0.2 0.15 11.7 0.0 2.5 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family Thiolase_N PF00108.18 gi|307596353|ref|YP_003902670.1| - 6e-62 209.0 0.0 8.1e-62 208.5 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|307596353|ref|YP_003902670.1| - 4.7e-48 161.6 0.3 1.6e-47 159.9 0.2 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|307596353|ref|YP_003902670.1| - 6.7e-07 29.0 0.0 1.9e-05 24.2 0.0 2.3 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|307596353|ref|YP_003902670.1| - 0.046 13.5 0.1 7.7 6.3 0.1 3.0 2 1 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain HTH_7 PF02796.10 gi|307596354|ref|YP_003902671.1| - 2.4e-05 24.1 0.0 0.00055 19.7 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_3 PF01381.17 gi|307596354|ref|YP_003902671.1| - 2.9e-05 23.8 0.0 8.5e-05 22.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|307596354|ref|YP_003902671.1| - 0.00022 20.7 0.0 0.00046 19.7 0.0 1.6 1 1 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|307596354|ref|YP_003902671.1| - 0.00035 19.8 0.2 0.089 12.1 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|307596354|ref|YP_003902671.1| - 0.00036 20.0 0.1 0.00087 18.7 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|307596354|ref|YP_003902671.1| - 0.00041 19.9 0.1 0.0049 16.4 0.0 2.6 3 0 0 3 3 3 1 HTH domain HTH_40 PF14493.1 gi|307596354|ref|YP_003902671.1| - 0.00065 19.8 0.1 0.0012 18.9 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|307596354|ref|YP_003902671.1| - 0.00072 18.9 0.1 0.0023 17.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|307596354|ref|YP_003902671.1| - 0.0014 18.3 0.2 0.0056 16.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_CodY PF08222.6 gi|307596354|ref|YP_003902671.1| - 0.0032 16.7 0.3 0.1 11.9 0.0 2.6 3 0 0 3 3 3 1 CodY helix-turn-helix domain HTH_5 PF01022.15 gi|307596354|ref|YP_003902671.1| - 0.0069 16.0 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|307596354|ref|YP_003902671.1| - 0.0073 15.8 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|307596354|ref|YP_003902671.1| - 0.012 14.9 0.2 0.053 12.9 0.0 2.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.7 gi|307596354|ref|YP_003902671.1| - 0.013 15.0 0.0 0.031 13.8 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.1 gi|307596354|ref|YP_003902671.1| - 0.018 15.1 0.0 0.052 13.7 0.0 1.7 2 1 0 2 2 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|307596354|ref|YP_003902671.1| - 0.032 14.2 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|307596354|ref|YP_003902671.1| - 0.049 13.7 0.4 0.095 12.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|307596354|ref|YP_003902671.1| - 0.05 13.1 0.2 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF4355 PF14265.1 gi|307596354|ref|YP_003902671.1| - 0.055 13.4 0.3 0.11 12.4 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4355) EAP30 PF04157.11 gi|307596354|ref|YP_003902671.1| - 0.055 12.6 0.2 2.1 7.4 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_DeoR PF08220.7 gi|307596354|ref|YP_003902671.1| - 0.065 12.7 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain GerE PF00196.14 gi|307596354|ref|YP_003902671.1| - 0.076 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_1 PF01527.15 gi|307596354|ref|YP_003902671.1| - 0.082 12.8 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 Transposase DUF2379 PF09543.5 gi|307596354|ref|YP_003902671.1| - 0.1 12.5 0.1 0.23 11.4 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2379) MerR_1 PF13411.1 gi|307596354|ref|YP_003902671.1| - 0.12 12.1 0.5 1.3 8.8 0.0 2.7 3 0 0 3 3 3 0 MerR HTH family regulatory protein Pox_A_type_inc PF04508.7 gi|307596354|ref|YP_003902671.1| - 2.3 8.2 5.5 0.58 10.0 0.9 2.2 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat KaiC PF06745.8 gi|307596355|ref|YP_003902672.1| - 1.9e-83 279.0 0.4 2.5e-83 278.6 0.0 1.3 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|307596355|ref|YP_003902672.1| - 1.5e-08 34.3 0.0 5.3e-08 32.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain GvpD PF07088.6 gi|307596355|ref|YP_003902672.1| - 0.00017 20.0 0.1 0.00021 19.7 0.1 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.4 gi|307596355|ref|YP_003902672.1| - 0.00047 19.2 1.5 0.00054 19.0 0.1 1.9 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|307596355|ref|YP_003902672.1| - 0.0025 17.6 0.0 0.0054 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|307596355|ref|YP_003902672.1| - 0.013 15.2 1.0 0.038 13.7 0.7 1.7 1 0 0 1 1 1 0 Part of AAA domain N6_N4_Mtase PF01555.13 gi|307596355|ref|YP_003902672.1| - 0.017 14.5 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 DNA methylase Arch_ATPase PF01637.13 gi|307596355|ref|YP_003902672.1| - 0.025 14.3 0.3 0.27 10.9 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_22 PF13401.1 gi|307596355|ref|YP_003902672.1| - 0.025 14.7 0.1 0.062 13.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|307596355|ref|YP_003902672.1| - 0.039 14.2 0.4 0.11 12.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain PAXNEB PF05625.6 gi|307596355|ref|YP_003902672.1| - 0.069 11.9 0.1 0.17 10.7 0.0 1.6 2 0 0 2 2 2 0 PAXNEB protein FtsK_SpoIIIE PF01580.13 gi|307596355|ref|YP_003902672.1| - 0.07 12.5 0.0 1.2 8.5 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family Viral_helicase1 PF01443.13 gi|307596355|ref|YP_003902672.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.1 gi|307596355|ref|YP_003902672.1| - 0.17 11.8 0.1 0.33 10.9 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain HU-DNA_bdg PF14848.1 gi|307596356|ref|YP_003902673.1| - 0.0072 16.0 0.3 0.017 14.8 0.2 1.6 1 1 1 2 2 2 1 DNA-binding domain DUF3864 PF12980.2 gi|307596356|ref|YP_003902673.1| - 0.18 11.9 3.7 17 5.7 0.1 3.0 2 1 1 3 3 3 0 Domain of Unknown Function with PDB structure (DUF3864) CbiA PF01656.18 gi|307596358|ref|YP_003902675.1| - 5.3e-10 39.0 0.1 7.9e-10 38.4 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|307596358|ref|YP_003902675.1| - 1.2e-08 34.9 0.1 2e-08 34.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|307596358|ref|YP_003902675.1| - 4.4e-05 22.9 0.0 6.4e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|307596358|ref|YP_003902675.1| - 0.0022 17.1 0.2 0.0063 15.6 0.0 1.7 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|307596358|ref|YP_003902675.1| - 0.0033 16.5 0.5 0.0033 16.5 0.3 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|307596358|ref|YP_003902675.1| - 0.0066 15.6 0.3 0.016 14.4 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|307596358|ref|YP_003902675.1| - 0.071 12.5 0.0 0.091 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Auxin_resp PF06507.8 gi|307596358|ref|YP_003902675.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Auxin response factor T2SE PF00437.15 gi|307596359|ref|YP_003902676.1| - 2.3e-18 66.0 0.0 4.9e-18 65.0 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|307596359|ref|YP_003902676.1| - 0.00012 21.2 0.0 0.00021 20.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.1 gi|307596359|ref|YP_003902676.1| - 0.00014 22.2 0.4 0.0014 18.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|307596359|ref|YP_003902676.1| - 0.0022 17.4 0.0 0.0047 16.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|307596359|ref|YP_003902676.1| - 0.0092 15.7 0.0 0.026 14.2 0.0 1.7 2 0 0 2 2 2 1 Part of AAA domain AAA PF00004.24 gi|307596359|ref|YP_003902676.1| - 0.011 15.9 0.0 0.03 14.5 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|307596359|ref|YP_003902676.1| - 0.013 15.5 0.0 0.027 14.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|307596359|ref|YP_003902676.1| - 0.017 14.8 0.0 0.048 13.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|307596359|ref|YP_003902676.1| - 0.019 14.4 0.0 0.11 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain Arch_ATPase PF01637.13 gi|307596359|ref|YP_003902676.1| - 0.028 14.1 0.4 2.1 7.9 0.0 2.9 3 0 0 3 3 3 0 Archaeal ATPase IstB_IS21 PF01695.12 gi|307596359|ref|YP_003902676.1| - 0.03 13.7 0.0 0.069 12.5 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein SMC_N PF02463.14 gi|307596359|ref|YP_003902676.1| - 0.042 13.0 0.0 0.079 12.1 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|307596359|ref|YP_003902676.1| - 0.062 14.1 0.0 0.21 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|307596359|ref|YP_003902676.1| - 0.076 13.3 0.0 0.21 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|307596359|ref|YP_003902676.1| - 0.087 12.9 0.0 0.32 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|307596359|ref|YP_003902676.1| - 0.11 12.1 0.0 0.71 9.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Colicin_M PF14859.1 gi|307596361|ref|YP_003902678.1| - 0.018 13.9 3.3 0.022 13.6 2.3 1.1 1 0 0 1 1 1 0 Colicin M DUF805 PF05656.9 gi|307596361|ref|YP_003902678.1| - 0.12 12.2 1.3 0.17 11.7 0.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF4006 PF13179.1 gi|307596364|ref|YP_003902681.1| - 0.011 15.2 1.1 0.016 14.7 0.7 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF4006) DUF3659 PF12396.3 gi|307596365|ref|YP_003902682.1| - 0.028 14.1 0.6 0.077 12.6 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) GCR1_C PF12550.3 gi|307596365|ref|YP_003902682.1| - 0.078 12.8 0.2 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 Transcriptional activator of glycolytic enzymes FCD PF07729.7 gi|307596366|ref|YP_003902683.1| - 0.0016 18.7 5.1 4.4 7.6 0.0 4.2 2 2 2 4 4 4 2 FCD domain Cas_TM1802 PF09484.5 gi|307596366|ref|YP_003902683.1| - 0.017 13.6 1.5 0.032 12.7 1.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein TM1802 (cas_TM1802) HTH_10 PF04967.7 gi|307596366|ref|YP_003902683.1| - 0.018 14.6 0.6 0.72 9.4 0.0 2.9 3 0 0 3 3 3 0 HTH DNA binding domain DUF2113 PF09886.4 gi|307596366|ref|YP_003902683.1| - 0.15 11.1 3.0 2.1 7.4 0.1 3.4 4 1 1 5 5 5 0 Uncharacterized protein conserved in archaea (DUF2113) PCI PF01399.22 gi|307596366|ref|YP_003902683.1| - 0.32 11.3 8.2 17 5.7 0.4 4.7 4 1 0 4 4 4 0 PCI domain ATP_bind_3 PF01171.15 gi|307596367|ref|YP_003902684.1| - 1.2e-18 67.3 0.0 2.8e-18 66.0 0.0 1.6 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|307596367|ref|YP_003902684.1| - 0.00025 20.8 0.0 0.0004 20.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|307596367|ref|YP_003902684.1| - 0.0013 18.1 0.9 0.0013 18.1 0.6 3.0 3 0 0 3 3 3 1 RecR protein ThiS PF02597.15 gi|307596367|ref|YP_003902684.1| - 0.0019 18.5 0.7 0.041 14.2 0.3 2.5 2 0 0 2 2 2 1 ThiS family tRNA_Me_trans PF03054.11 gi|307596367|ref|YP_003902684.1| - 0.0042 15.6 0.0 0.006 15.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ThiS-like PF14453.1 gi|307596367|ref|YP_003902684.1| - 0.017 14.9 0.2 0.037 13.8 0.1 1.5 1 0 0 1 1 1 0 ThiS-like ubiquitin DUF3195 PF11424.3 gi|307596367|ref|YP_003902684.1| - 0.068 13.3 0.0 0.26 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3195) CdhD PF03599.11 gi|307596367|ref|YP_003902684.1| - 0.16 10.4 0.0 0.25 9.7 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit His_Phos_1 PF00300.17 gi|307596368|ref|YP_003902685.1| - 2.6e-08 34.1 0.0 4.5e-08 33.3 0.0 1.3 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) TF_Zn_Ribbon PF08271.7 gi|307596369|ref|YP_003902686.1| - 1.5e-05 24.1 1.6 2.6e-05 23.4 1.1 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding DUF1922 PF09082.5 gi|307596369|ref|YP_003902686.1| - 1.6e-05 24.8 0.4 1.8e-05 24.7 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) zinc_ribbon_2 PF13240.1 gi|307596369|ref|YP_003902686.1| - 2.4e-05 23.6 0.7 4.8e-05 22.7 0.5 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Ogr_Delta PF04606.7 gi|307596369|ref|YP_003902686.1| - 0.00034 20.2 0.7 0.59 9.8 0.0 2.2 1 1 1 2 2 2 2 Ogr/Delta-like zinc finger CpXC PF14353.1 gi|307596369|ref|YP_003902686.1| - 0.00039 20.3 0.6 0.078 12.9 0.0 2.1 1 1 2 3 3 3 2 CpXC protein zf-ribbon_3 PF13248.1 gi|307596369|ref|YP_003902686.1| - 0.0004 19.4 4.0 0.0022 17.1 2.9 1.9 1 1 1 2 2 2 2 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|307596369|ref|YP_003902686.1| - 0.0015 18.0 0.2 0.0021 17.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.6 gi|307596369|ref|YP_003902686.1| - 0.0024 17.4 0.7 0.0036 16.9 0.5 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|307596369|ref|YP_003902686.1| - 0.0038 16.7 2.4 0.27 10.8 1.4 2.2 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|307596369|ref|YP_003902686.1| - 0.004 16.9 0.2 0.007 16.1 0.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|307596369|ref|YP_003902686.1| - 0.0045 16.4 0.1 0.0046 16.4 0.1 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zinc_ribbon_4 PF13717.1 gi|307596369|ref|YP_003902686.1| - 0.0061 16.2 2.6 0.67 9.6 1.5 2.3 1 1 1 2 2 2 2 zinc-ribbon domain RecR PF02132.10 gi|307596369|ref|YP_003902686.1| - 0.0061 15.9 1.1 2.4 7.6 1.6 2.4 1 1 1 2 2 2 1 RecR protein zf-ISL3 PF14690.1 gi|307596369|ref|YP_003902686.1| - 0.0078 16.2 7.9 0.23 11.4 0.3 2.9 2 1 1 3 3 3 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|307596369|ref|YP_003902686.1| - 0.011 16.0 1.2 0.02 15.1 0.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar IBR PF01485.16 gi|307596369|ref|YP_003902686.1| - 0.026 14.4 0.6 0.039 13.8 0.4 1.3 1 0 0 1 1 1 0 IBR domain Zn-ribbon_8 PF09723.5 gi|307596369|ref|YP_003902686.1| - 0.026 14.4 2.2 0.12 12.3 1.6 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|307596369|ref|YP_003902686.1| - 0.032 14.1 0.1 0.037 13.8 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-C2H2_4 PF13894.1 gi|307596369|ref|YP_003902686.1| - 0.045 14.0 1.4 1.5 9.3 0.1 2.3 2 1 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.1 gi|307596369|ref|YP_003902686.1| - 0.048 13.9 1.6 3 8.1 1.1 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Ribosomal_L37e PF01907.14 gi|307596369|ref|YP_003902686.1| - 0.051 13.3 0.5 0.086 12.6 0.4 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e Mu-like_Com PF10122.4 gi|307596369|ref|YP_003902686.1| - 0.053 12.5 2.1 0.3 10.1 1.4 2.1 1 1 2 3 3 3 0 Mu-like prophage protein Com Rubredoxin PF00301.15 gi|307596369|ref|YP_003902686.1| - 0.056 13.3 1.8 0.86 9.5 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin zf-NADH-PPase PF09297.6 gi|307596369|ref|YP_003902686.1| - 0.073 12.5 2.0 3 7.4 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|307596369|ref|YP_003902686.1| - 0.087 12.3 2.4 2.2 7.8 0.1 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger RNA_POL_M_15KD PF02150.11 gi|307596369|ref|YP_003902686.1| - 0.088 12.5 1.8 0.19 11.4 1.2 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF4075 PF13294.1 gi|307596369|ref|YP_003902686.1| - 0.093 12.7 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4075) HypA PF01155.14 gi|307596369|ref|YP_003902686.1| - 0.1 12.3 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF329 PF03884.9 gi|307596369|ref|YP_003902686.1| - 0.1 12.1 1.1 2.1 7.9 1.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Cys_rich_CPXG PF14255.1 gi|307596369|ref|YP_003902686.1| - 0.14 12.0 2.4 1.1 9.1 0.3 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-H2C2_2 PF13465.1 gi|307596369|ref|YP_003902686.1| - 0.15 12.4 2.4 0.44 10.9 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|307596369|ref|YP_003902686.1| - 0.15 11.8 5.1 1.2 8.9 3.7 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain FYDLN_acid PF09538.5 gi|307596369|ref|YP_003902686.1| - 0.16 12.5 0.4 0.63 10.6 0.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TFIIS_C PF01096.13 gi|307596369|ref|YP_003902686.1| - 0.17 11.5 1.2 4.8 6.8 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-FPG_IleRS PF06827.9 gi|307596369|ref|YP_003902686.1| - 0.24 11.1 3.6 0.46 10.1 2.5 1.6 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Cys_rich_CPCC PF14206.1 gi|307596369|ref|YP_003902686.1| - 0.25 10.9 4.3 1.9 8.1 0.4 2.0 1 1 1 2 2 2 0 Cysteine-rich CPCC zf-Di19 PF05605.7 gi|307596369|ref|YP_003902686.1| - 0.32 11.1 2.5 1.2 9.2 0.1 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Auto_anti-p27 PF06677.7 gi|307596369|ref|YP_003902686.1| - 0.4 10.4 2.5 1.7 8.4 1.9 1.9 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-Sec23_Sec24 PF04810.10 gi|307596369|ref|YP_003902686.1| - 0.43 10.1 3.0 1.9 8.1 2.0 1.8 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger Cys_rich_KTR PF14205.1 gi|307596369|ref|YP_003902686.1| - 0.46 9.9 2.8 2.8 7.4 0.2 2.2 1 1 1 2 2 2 0 Cysteine-rich KTR DUF3797 PF12677.2 gi|307596369|ref|YP_003902686.1| - 0.53 9.9 5.2 0.94 9.1 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF164 PF02591.10 gi|307596369|ref|YP_003902686.1| - 0.73 9.7 3.0 3 7.7 0.1 2.3 1 1 1 2 2 2 0 Putative zinc ribbon domain zf-Mss51 PF13824.1 gi|307596369|ref|YP_003902686.1| - 0.94 9.3 4.1 3.1 7.7 2.8 1.9 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-LITAF-like PF10601.4 gi|307596369|ref|YP_003902686.1| - 1 9.2 4.2 2.9 7.8 0.3 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain UPF0547 PF10571.4 gi|307596369|ref|YP_003902686.1| - 1.1 9.0 10.3 29 4.4 7.2 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|307596369|ref|YP_003902686.1| - 1.1 9.4 7.4 2.4 8.3 0.1 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) zf-TFIIB PF13453.1 gi|307596369|ref|YP_003902686.1| - 1.2 8.3 3.5 25 4.1 0.1 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-tcix PF14952.1 gi|307596369|ref|YP_003902686.1| - 1.3 8.4 6.7 3.4 7.0 1.7 2.4 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-C2HC_2 PF13913.1 gi|307596369|ref|YP_003902686.1| - 1.4 8.6 6.6 1.4 8.6 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-RING_3 PF14369.1 gi|307596369|ref|YP_003902686.1| - 2 8.4 5.9 10 6.1 0.5 2.2 1 1 1 2 2 2 0 zinc-finger Zn_Tnp_IS1 PF03811.8 gi|307596369|ref|YP_003902686.1| - 2.9 7.4 5.9 59 3.2 4.5 2.3 1 1 1 2 2 2 0 InsA N-terminal domain zf-CHCC PF10276.4 gi|307596369|ref|YP_003902686.1| - 6 6.8 6.5 0.58 10.0 1.1 1.8 1 1 1 2 2 2 0 Zinc-finger domain zf-C2H2 PF00096.21 gi|307596369|ref|YP_003902686.1| - 8.6 6.9 6.4 4.8 7.7 0.8 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type Ribonuc_red_lgC PF02867.10 gi|307596370|ref|YP_003902687.1| - 1.2e-146 489.4 0.0 1.5e-146 489.1 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|307596370|ref|YP_003902687.1| - 3.4e-24 84.4 0.1 8.6e-24 83.1 0.0 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|307596370|ref|YP_003902687.1| - 0.0011 19.3 0.0 0.0031 17.9 0.0 1.8 1 0 0 1 1 1 1 ATP cone domain Topoisom_bac PF01131.15 gi|307596371|ref|YP_003902688.1| - 8.7e-95 317.8 0.0 1.2e-94 317.3 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|307596371|ref|YP_003902688.1| - 2.8e-19 68.9 0.0 2.6e-18 65.8 0.0 2.8 3 1 0 3 3 1 1 Toprim domain DEAD PF00270.24 gi|307596371|ref|YP_003902688.1| - 3.4e-15 55.9 0.0 1e-14 54.4 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|307596371|ref|YP_003902688.1| - 9.5e-06 25.5 0.0 2.6e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|307596371|ref|YP_003902688.1| - 0.00019 20.9 0.2 0.0011 18.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|307596371|ref|YP_003902688.1| - 0.0042 16.7 0.1 0.021 14.5 0.1 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_10 PF12846.2 gi|307596371|ref|YP_003902688.1| - 0.012 15.1 0.7 0.031 13.7 0.1 2.2 2 1 0 2 2 2 0 AAA-like domain Helicase_C PF00271.26 gi|307596371|ref|YP_003902688.1| - 0.015 15.1 0.2 44 4.0 0.0 3.8 3 0 0 3 3 3 0 Helicase conserved C-terminal domain SecA_DEAD PF07517.9 gi|307596371|ref|YP_003902688.1| - 0.042 13.1 0.1 0.11 11.8 0.1 1.7 1 0 0 1 1 1 0 SecA DEAD-like domain SRP54 PF00448.17 gi|307596371|ref|YP_003902688.1| - 0.042 13.2 0.0 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CemA PF03040.9 gi|307596371|ref|YP_003902688.1| - 0.3 10.6 1.5 0.63 9.6 0.1 2.1 2 0 0 2 2 2 0 CemA family AAA_23 PF13476.1 gi|307596371|ref|YP_003902688.1| - 0.33 11.2 7.4 3.3 8.0 0.1 3.3 3 0 0 3 3 3 0 AAA domain DUF87 PF01935.12 gi|307596371|ref|YP_003902688.1| - 0.34 10.6 4.5 0.52 10.0 1.2 2.5 2 1 0 2 2 2 0 Domain of unknown function DUF87 DUF2540 PF10802.3 gi|307596371|ref|YP_003902688.1| - 1.1 8.9 7.7 0.086 12.5 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2540) DUF3989 PF13150.1 gi|307596372|ref|YP_003902689.1| - 0.1 12.0 4.4 0.052 13.0 1.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3989) PilX_N PF14341.1 gi|307596372|ref|YP_003902689.1| - 3.3 7.4 6.0 3.9 7.2 2.8 2.2 1 1 0 1 1 1 0 PilX N-terminal Pox_VLTF3 PF04947.9 gi|307596373|ref|YP_003902690.1| - 0.086 12.3 0.1 0.41 10.1 0.1 1.8 1 1 0 2 2 2 0 Poxvirus Late Transcription Factor VLTF3 like RIO1 PF01163.17 gi|307596375|ref|YP_003902692.1| - 1.5e-52 177.6 0.0 2.4e-52 177.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|307596375|ref|YP_003902692.1| - 0.002 17.9 0.0 0.023 14.4 0.0 2.2 2 0 0 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|307596375|ref|YP_003902692.1| - 0.098 11.7 0.0 1 8.4 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|307596375|ref|YP_003902692.1| - 0.1 11.7 0.1 0.38 9.8 0.0 1.8 2 0 0 2 2 2 0 Protein kinase domain Bot1p PF12298.3 gi|307596376|ref|YP_003902693.1| - 0.062 13.2 0.0 0.062 13.2 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic mitochondrial regulator protein Fer4 PF00037.22 gi|307596377|ref|YP_003902694.1| - 7.4e-11 41.1 13.7 4.9e-06 25.9 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307596377|ref|YP_003902694.1| - 1.1e-09 37.9 21.2 7.9e-07 28.7 8.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307596377|ref|YP_003902694.1| - 3.8e-09 36.7 8.3 7.5e-09 35.8 5.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307596377|ref|YP_003902694.1| - 1.3e-06 28.6 3.7 0.0054 17.0 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307596377|ref|YP_003902694.1| - 2.2e-06 28.3 7.9 0.00079 20.1 6.8 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|307596377|ref|YP_003902694.1| - 3.3e-06 26.9 10.2 0.007 16.6 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307596377|ref|YP_003902694.1| - 3.7e-06 26.7 10.5 1.6e-05 24.6 7.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307596377|ref|YP_003902694.1| - 7e-06 25.6 16.2 0.00097 18.9 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|307596377|ref|YP_003902694.1| - 9.4e-06 25.2 12.9 0.0064 16.3 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|307596377|ref|YP_003902694.1| - 1.8e-05 24.8 11.2 6.3e-05 23.1 7.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|307596377|ref|YP_003902694.1| - 3.1e-05 23.9 8.0 0.00059 19.8 6.9 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|307596377|ref|YP_003902694.1| - 0.00022 21.5 5.7 0.14 12.5 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|307596377|ref|YP_003902694.1| - 0.00029 21.1 12.9 0.043 14.2 2.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|307596377|ref|YP_003902694.1| - 0.0037 17.1 1.2 0.28 11.0 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|307596377|ref|YP_003902694.1| - 0.0053 17.2 5.6 0.67 10.5 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain TBCC PF07986.7 gi|307596377|ref|YP_003902694.1| - 0.027 13.8 0.1 0.04 13.3 0.1 1.4 1 1 0 1 1 1 0 Tubulin binding cofactor C Fer4_3 PF12798.2 gi|307596377|ref|YP_003902694.1| - 0.25 11.9 15.1 0.66 10.6 3.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|307596378|ref|YP_003902695.1| - 5.9e-68 228.7 0.1 8e-68 228.3 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|307596378|ref|YP_003902695.1| - 0.0018 18.1 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|307596379|ref|YP_003902696.1| - 5.8e-35 120.1 0.2 8.2e-35 119.6 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.13 gi|307596380|ref|YP_003902697.1| - 3.3e-31 108.5 0.1 3.8e-31 108.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase CytB6-F_Fe-S PF08802.5 gi|307596380|ref|YP_003902697.1| - 2.4 8.2 4.7 0.33 10.9 0.4 1.7 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit FlpD PF02662.11 gi|307596381|ref|YP_003902698.1| - 1.2e-35 121.8 0.7 7.1e-35 119.3 0.1 2.6 3 0 0 3 3 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.9 gi|307596381|ref|YP_003902698.1| - 2.7e-22 79.6 4.5 4.8e-10 39.6 1.1 4.3 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.22 gi|307596381|ref|YP_003902698.1| - 7.1e-20 69.7 36.1 3.4e-09 35.9 1.0 4.8 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307596381|ref|YP_003902698.1| - 7.5e-14 51.2 26.0 8e-08 31.9 7.8 3.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain NAD_binding_8 PF13450.1 gi|307596381|ref|YP_003902698.1| - 2.1e-13 50.0 4.9 7.9e-07 29.0 0.0 3.7 4 0 0 4 4 3 2 NAD(P)-binding Rossmann-like domain Fer4_7 PF12838.2 gi|307596381|ref|YP_003902698.1| - 6.6e-13 48.8 37.9 1.6e-09 37.9 8.9 4.5 3 2 3 6 6 5 4 4Fe-4S dicluster domain Pyr_redox_3 PF13738.1 gi|307596381|ref|YP_003902698.1| - 1.2e-12 48.3 1.6 0.0045 17.0 0.0 3.6 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|307596381|ref|YP_003902698.1| - 1.6e-12 47.2 9.5 6.5e-07 28.7 0.3 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.19 gi|307596381|ref|YP_003902698.1| - 4.3e-12 45.6 11.1 1.4e-05 24.1 0.5 4.2 4 0 0 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|307596381|ref|YP_003902698.1| - 4.8e-12 45.0 10.8 0.00042 18.9 1.0 3.3 2 1 1 3 3 3 3 HI0933-like protein Fer4_6 PF12837.2 gi|307596381|ref|YP_003902698.1| - 9.2e-12 44.2 35.5 2.7e-05 23.8 1.0 5.1 4 0 0 4 4 4 3 4Fe-4S binding domain GIDA PF01134.17 gi|307596381|ref|YP_003902698.1| - 1.2e-11 44.0 13.5 4.1e-06 25.9 0.1 4.7 5 0 0 5 5 5 3 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|307596381|ref|YP_003902698.1| - 1.5e-11 44.5 8.8 7.8e-07 29.4 0.1 4.7 4 1 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|307596381|ref|YP_003902698.1| - 1.2e-10 40.8 11.2 2.3e-05 23.4 0.8 3.4 3 0 0 3 3 3 2 FAD binding domain Fer4_17 PF13534.1 gi|307596381|ref|YP_003902698.1| - 3.3e-10 40.1 21.6 0.0017 18.6 1.9 5.0 5 0 0 5 5 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307596381|ref|YP_003902698.1| - 7.7e-10 38.4 25.8 8.6e-08 31.9 4.6 4.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307596381|ref|YP_003902698.1| - 1e-09 38.9 28.5 0.0034 18.0 0.9 4.6 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|307596381|ref|YP_003902698.1| - 1.1e-08 34.4 38.2 0.00011 21.9 1.3 5.4 5 0 0 5 5 4 3 4Fe-4S binding domain FAD_binding_3 PF01494.14 gi|307596381|ref|YP_003902698.1| - 2e-08 33.6 5.0 0.00017 20.7 0.2 2.8 3 0 0 3 3 3 2 FAD binding domain Fer4_9 PF13187.1 gi|307596381|ref|YP_003902698.1| - 3.3e-08 33.6 41.3 1.3e-07 31.7 8.5 4.4 3 1 1 4 4 3 3 4Fe-4S dicluster domain Amino_oxidase PF01593.19 gi|307596381|ref|YP_003902698.1| - 2.1e-07 30.4 6.1 0.012 14.6 0.0 3.7 4 0 0 4 4 3 2 Flavin containing amine oxidoreductase Fer4_8 PF13183.1 gi|307596381|ref|YP_003902698.1| - 2.4e-07 30.6 29.0 0.00034 20.5 8.0 3.9 2 2 2 4 4 4 3 4Fe-4S dicluster domain Thi4 PF01946.12 gi|307596381|ref|YP_003902698.1| - 1.9e-06 27.1 2.4 0.014 14.5 0.1 2.7 2 0 0 2 2 2 2 Thi4 family Fer4_18 PF13746.1 gi|307596381|ref|YP_003902698.1| - 7.5e-06 26.2 23.2 0.015 15.6 0.6 4.8 4 0 0 4 4 4 3 4Fe-4S dicluster domain NAD_binding_7 PF13241.1 gi|307596381|ref|YP_003902698.1| - 0.00032 20.9 0.7 6.9 6.9 0.0 4.4 5 0 0 5 5 3 0 Putative NAD(P)-binding CPSase_L_chain PF00289.17 gi|307596381|ref|YP_003902698.1| - 0.00036 20.6 0.1 1.1 9.3 0.0 3.0 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain Fer4_4 PF12800.2 gi|307596381|ref|YP_003902698.1| - 0.00081 19.5 45.1 0.0078 16.4 1.9 5.4 5 0 0 5 5 4 3 4Fe-4S binding domain AlaDh_PNT_C PF01262.16 gi|307596381|ref|YP_003902698.1| - 0.00082 18.9 0.2 0.12 11.8 0.0 2.8 3 0 0 3 3 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|307596381|ref|YP_003902698.1| - 0.0012 17.8 6.3 0.74 8.6 0.3 3.2 2 1 1 3 3 3 2 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|307596381|ref|YP_003902698.1| - 0.0014 18.3 2.2 0.31 10.6 0.2 2.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|307596381|ref|YP_003902698.1| - 0.0036 17.0 4.2 4.6 6.9 0.0 3.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding Fer4_15 PF13459.1 gi|307596381|ref|YP_003902698.1| - 0.0062 17.0 25.5 0.12 13.0 2.0 5.2 5 0 0 5 5 4 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|307596381|ref|YP_003902698.1| - 0.02 15.4 4.8 0.02 15.4 3.4 5.6 5 0 0 5 5 4 0 4Fe-4S binding domain Methyltransf_18 PF12847.2 gi|307596381|ref|YP_003902698.1| - 0.039 14.5 0.2 9.9 6.7 0.0 3.3 3 0 0 3 3 2 0 Methyltransferase domain Trp_halogenase PF04820.9 gi|307596381|ref|YP_003902698.1| - 0.087 11.4 6.4 0.026 13.1 0.5 2.2 2 0 0 2 2 2 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.9 gi|307596381|ref|YP_003902698.1| - 0.11 11.8 3.5 8.9 5.6 0.0 3.5 4 0 0 4 4 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|307596381|ref|YP_003902698.1| - 0.27 11.0 8.2 0.51 10.1 0.7 2.9 3 0 0 3 3 2 0 ThiF family TrkA_N PF02254.13 gi|307596381|ref|YP_003902698.1| - 0.31 11.0 3.4 7.1 6.6 0.1 3.2 4 0 0 4 4 2 0 TrkA-N domain K_oxygenase PF13434.1 gi|307596381|ref|YP_003902698.1| - 0.54 9.1 2.4 1.7 7.4 0.0 2.8 4 0 0 4 4 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Fer4_13 PF13370.1 gi|307596381|ref|YP_003902698.1| - 3.2 8.2 23.5 7.9 6.9 1.7 4.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain CCG PF02754.11 gi|307596382|ref|YP_003902699.1| - 5e-27 93.7 6.0 2e-17 62.9 0.0 2.8 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|307596382|ref|YP_003902699.1| - 2.1e-09 37.2 5.7 2.1e-09 37.2 3.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307596382|ref|YP_003902699.1| - 3.5e-07 29.9 6.3 3.5e-07 29.9 4.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|307596382|ref|YP_003902699.1| - 1.9e-06 28.1 9.9 8.7e-06 25.9 5.9 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307596382|ref|YP_003902699.1| - 5.8e-05 23.3 7.5 5.8e-05 23.3 5.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|307596382|ref|YP_003902699.1| - 0.0001 22.6 9.7 0.0062 16.9 0.4 3.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307596382|ref|YP_003902699.1| - 0.00018 21.6 13.3 0.0051 17.0 8.2 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307596382|ref|YP_003902699.1| - 0.0046 16.5 16.9 0.087 12.4 2.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|307596382|ref|YP_003902699.1| - 0.014 15.2 15.5 0.11 12.4 0.8 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307596382|ref|YP_003902699.1| - 0.062 13.1 13.8 0.043 13.6 7.4 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|307596382|ref|YP_003902699.1| - 0.065 13.1 1.0 0.065 13.1 0.7 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|307596382|ref|YP_003902699.1| - 0.48 10.8 9.8 0.88 10.0 1.0 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|307596382|ref|YP_003902699.1| - 0.58 10.8 16.8 4.7 8.0 4.1 3.0 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|307596382|ref|YP_003902699.1| - 0.95 10.2 16.2 2.9 8.7 9.4 2.7 2 1 0 2 2 1 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|307596382|ref|YP_003902699.1| - 1.2 9.7 6.3 1.7 9.2 0.3 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|307596382|ref|YP_003902699.1| - 3.6 7.2 7.8 0.92 9.1 0.4 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.2 gi|307596382|ref|YP_003902699.1| - 4.3 7.9 14.6 1.4 9.4 1.2 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain ETF PF01012.16 gi|307596383|ref|YP_003902700.1| - 5.4e-31 107.5 0.0 8.3e-31 106.9 0.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|307596383|ref|YP_003902700.1| - 2.2e-17 62.4 0.0 3.7e-17 61.7 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|307596384|ref|YP_003902701.1| - 6.5e-41 139.7 0.0 8.7e-41 139.3 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain eIF-1a PF01176.14 gi|307596385|ref|YP_003902702.1| - 4.9e-22 77.1 0.1 6.3e-22 76.7 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 MIase PF02426.11 gi|307596385|ref|YP_003902702.1| - 0.077 12.8 0.0 7.9 6.3 0.0 2.3 1 1 1 2 2 2 0 Muconolactone delta-isomerase NMD3 PF04981.8 gi|307596386|ref|YP_003902703.1| - 8.5e-40 136.3 0.4 1e-39 136.0 0.3 1.1 1 0 0 1 1 1 1 NMD3 family zf-TFIIB PF13453.1 gi|307596386|ref|YP_003902703.1| - 0.00029 19.9 2.9 0.2 10.8 0.2 2.6 2 0 0 2 2 2 2 Transcription factor zinc-finger DZR PF12773.2 gi|307596386|ref|YP_003902703.1| - 0.017 14.9 3.6 1.5 8.7 1.3 2.9 2 1 0 2 2 2 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|307596386|ref|YP_003902703.1| - 0.16 11.8 0.5 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 Ribosomal L37ae protein family zf-ribbon_3 PF13248.1 gi|307596386|ref|YP_003902703.1| - 0.55 9.5 0.1 0.55 9.5 0.0 3.1 4 0 0 4 4 4 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|307596386|ref|YP_003902703.1| - 0.64 9.7 3.4 19 4.9 1.2 2.8 2 1 0 2 2 2 0 Putative transposase DNA-binding domain DUF164 PF02591.10 gi|307596386|ref|YP_003902703.1| - 1.4 8.8 8.7 0.13 12.1 1.2 3.0 3 1 0 3 3 3 0 Putative zinc ribbon domain Prok-RING_1 PF14446.1 gi|307596386|ref|YP_003902703.1| - 1.6 8.4 9.3 6.3 6.6 1.1 3.3 2 1 1 3 3 3 0 Prokaryotic RING finger family 1 zf-Sec23_Sec24 PF04810.10 gi|307596386|ref|YP_003902703.1| - 2.5 7.7 6.2 3.6 7.2 0.2 3.1 3 0 0 3 3 3 0 Sec23/Sec24 zinc finger zf-FPG_IleRS PF06827.9 gi|307596386|ref|YP_003902703.1| - 3.9 7.2 9.2 2.5 7.8 0.1 3.5 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|307596386|ref|YP_003902703.1| - 5.1 7.1 6.1 8.5 6.4 0.5 3.1 3 1 0 3 3 3 0 Zinc ribbon domain UPF0547 PF10571.4 gi|307596386|ref|YP_003902703.1| - 6.4 6.5 13.7 30 4.4 0.1 3.9 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 Trypsin_2 PF13365.1 gi|307596387|ref|YP_003902704.1| - 3.1e-21 75.5 0.2 4.7e-21 74.9 0.2 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|307596387|ref|YP_003902704.1| - 8.6e-18 64.7 0.0 1.5e-17 63.9 0.0 1.3 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|307596387|ref|YP_003902704.1| - 6.7e-11 41.9 0.0 1.6e-10 40.6 0.0 1.7 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|307596387|ref|YP_003902704.1| - 9.2e-08 32.1 0.1 3.5e-07 30.3 0.0 2.0 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S32 PF05579.8 gi|307596387|ref|YP_003902704.1| - 0.0036 16.3 0.8 0.37 9.7 0.1 2.2 2 0 0 2 2 2 2 Equine arteritis virus serine endopeptidase S32 Peptidase_S46 PF10459.4 gi|307596387|ref|YP_003902704.1| - 0.053 11.9 0.4 0.084 11.2 0.3 1.2 1 0 0 1 1 1 0 Peptidase S46 Peptidase_S29 PF02907.10 gi|307596387|ref|YP_003902704.1| - 0.1 12.0 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease Peptidase_S7 PF00949.16 gi|307596387|ref|YP_003902704.1| - 0.14 11.5 0.2 0.25 10.7 0.1 1.4 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Phosphodiest PF01663.17 gi|307596388|ref|YP_003902705.1| - 6.2e-22 78.4 0.7 5.8e-20 71.9 0.5 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|307596388|ref|YP_003902705.1| - 4.4e-05 23.2 0.3 0.035 13.7 0.1 2.3 2 0 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.13 gi|307596388|ref|YP_003902705.1| - 0.006 15.9 0.2 0.006 15.9 0.1 1.8 2 0 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|307596388|ref|YP_003902705.1| - 0.032 13.4 0.1 2 7.5 0.0 2.1 2 0 0 2 2 2 0 Sulfatase GNT-I PF03071.10 gi|307596388|ref|YP_003902705.1| - 0.2 10.1 0.0 0.28 9.6 0.0 1.1 1 0 0 1 1 1 0 GNT-I family SRP54 PF00448.17 gi|307596389|ref|YP_003902706.1| - 4.1e-64 215.6 0.0 6.1e-64 215.0 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|307596389|ref|YP_003902706.1| - 1.5e-26 92.6 3.5 1.5e-25 89.4 1.2 2.6 1 1 1 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|307596389|ref|YP_003902706.1| - 3.8e-10 39.7 0.3 3.8e-10 39.7 0.2 2.9 4 0 0 4 4 4 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.1 gi|307596389|ref|YP_003902706.1| - 3.1e-09 37.0 1.5 4.6e-08 33.2 0.0 3.0 3 1 0 3 3 3 1 AAA domain CbiA PF01656.18 gi|307596389|ref|YP_003902706.1| - 1.5e-07 31.0 0.1 6e-07 29.0 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|307596389|ref|YP_003902706.1| - 1.2e-05 24.8 0.2 3.6e-05 23.2 0.0 1.9 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|307596389|ref|YP_003902706.1| - 2.4e-05 23.8 0.0 0.00012 21.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|307596389|ref|YP_003902706.1| - 0.00022 22.0 0.0 0.00076 20.2 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|307596389|ref|YP_003902706.1| - 0.0014 18.1 0.1 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|307596389|ref|YP_003902706.1| - 0.0018 18.0 0.0 0.007 16.0 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B G-alpha PF00503.15 gi|307596389|ref|YP_003902706.1| - 0.0043 15.7 0.0 0.0063 15.2 0.0 1.5 1 1 0 1 1 1 1 G-protein alpha subunit AAA_19 PF13245.1 gi|307596389|ref|YP_003902706.1| - 0.011 15.4 0.0 0.13 12.0 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA_33 PF13671.1 gi|307596389|ref|YP_003902706.1| - 0.012 15.4 0.0 0.03 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|307596389|ref|YP_003902706.1| - 0.012 15.0 0.0 0.95 8.9 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SinI PF08671.5 gi|307596389|ref|YP_003902706.1| - 0.014 14.7 1.2 2.8 7.4 0.0 3.4 3 0 0 3 3 3 0 Anti-repressor SinI Zeta_toxin PF06414.7 gi|307596389|ref|YP_003902706.1| - 0.017 14.2 0.1 0.045 12.8 0.0 1.7 1 1 0 1 1 1 0 Zeta toxin VirC1 PF07015.6 gi|307596389|ref|YP_003902706.1| - 0.018 14.1 0.0 0.13 11.3 0.0 2.3 2 1 1 3 3 3 0 VirC1 protein AAA_5 PF07728.9 gi|307596389|ref|YP_003902706.1| - 0.019 14.7 0.0 0.053 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|307596389|ref|YP_003902706.1| - 0.021 14.7 0.1 0.073 13.0 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_31 PF13614.1 gi|307596389|ref|YP_003902706.1| - 0.024 14.5 0.0 3.3 7.6 0.0 2.9 1 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|307596389|ref|YP_003902706.1| - 0.038 14.2 0.1 0.32 11.3 0.0 2.4 2 1 0 2 2 2 0 ABC transporter AAA_14 PF13173.1 gi|307596389|ref|YP_003902706.1| - 0.076 12.9 0.6 0.38 10.6 0.1 2.5 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|307596389|ref|YP_003902706.1| - 0.21 10.9 2.5 0.29 10.5 0.0 2.5 4 0 0 4 4 3 0 Thymidylate kinase KaiC PF06745.8 gi|307596390|ref|YP_003902707.1| - 6.2e-61 205.4 0.1 7.4e-61 205.1 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|307596390|ref|YP_003902707.1| - 1.5e-07 31.0 0.0 2.3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|307596390|ref|YP_003902707.1| - 0.0016 16.8 0.3 0.065 11.5 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_22 PF13401.1 gi|307596390|ref|YP_003902707.1| - 0.0054 16.8 0.0 0.0097 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|307596390|ref|YP_003902707.1| - 0.011 14.7 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.10 gi|307596390|ref|YP_003902707.1| - 0.025 13.4 0.0 0.036 12.9 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Caleosin PF05042.8 gi|307596390|ref|YP_003902707.1| - 0.032 13.7 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 Caleosin related protein T2SE PF00437.15 gi|307596391|ref|YP_003902708.1| - 9.8e-13 47.6 0.0 1.8e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|307596391|ref|YP_003902708.1| - 1.4e-07 32.3 0.0 3e-06 28.0 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|307596391|ref|YP_003902708.1| - 3.5e-06 27.3 0.1 8.3e-05 22.9 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|307596391|ref|YP_003902708.1| - 0.00035 20.2 0.0 0.001 18.8 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|307596391|ref|YP_003902708.1| - 0.00054 19.8 0.0 0.0079 16.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|307596391|ref|YP_003902708.1| - 0.0006 20.0 0.0 0.0014 18.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|307596391|ref|YP_003902708.1| - 0.00062 19.2 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|307596391|ref|YP_003902708.1| - 0.001 19.0 0.0 0.0027 17.6 0.0 1.8 2 0 0 2 2 1 1 AAA domain ATP_bind_1 PF03029.12 gi|307596391|ref|YP_003902708.1| - 0.0017 17.9 0.0 0.0033 17.0 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein KH_1 PF00013.24 gi|307596391|ref|YP_003902708.1| - 0.0026 17.3 0.8 0.015 14.9 0.0 2.8 2 1 1 3 3 3 1 KH domain AAA_5 PF07728.9 gi|307596391|ref|YP_003902708.1| - 0.0026 17.4 0.0 0.0079 15.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|307596391|ref|YP_003902708.1| - 0.003 16.9 0.1 0.0074 15.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|307596391|ref|YP_003902708.1| - 0.0035 17.4 0.0 0.016 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|307596391|ref|YP_003902708.1| - 0.0036 16.7 0.0 0.015 14.6 0.0 2.1 2 1 0 2 2 2 1 Thymidylate kinase Zeta_toxin PF06414.7 gi|307596391|ref|YP_003902708.1| - 0.0036 16.4 0.1 0.007 15.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|307596391|ref|YP_003902708.1| - 0.0047 16.8 0.0 0.013 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307596391|ref|YP_003902708.1| - 0.0091 16.0 0.0 0.071 13.0 0.0 2.3 2 1 1 3 3 3 1 AAA ATPase domain SRP54 PF00448.17 gi|307596391|ref|YP_003902708.1| - 0.0092 15.4 0.0 0.041 13.3 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain RuvB_N PF05496.7 gi|307596391|ref|YP_003902708.1| - 0.0095 15.0 0.0 0.017 14.1 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_30 PF13604.1 gi|307596391|ref|YP_003902708.1| - 0.015 14.9 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|307596391|ref|YP_003902708.1| - 0.015 14.8 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|307596391|ref|YP_003902708.1| - 0.016 15.3 0.0 0.099 12.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase KTI12 PF08433.5 gi|307596391|ref|YP_003902708.1| - 0.02 14.1 0.0 0.054 12.6 0.0 1.8 2 0 0 2 2 1 0 Chromatin associated protein KTI12 Sigma54_activ_2 PF14532.1 gi|307596391|ref|YP_003902708.1| - 0.024 14.6 0.0 0.057 13.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|307596391|ref|YP_003902708.1| - 0.027 14.1 0.0 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|307596391|ref|YP_003902708.1| - 0.033 14.4 0.0 0.083 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_10 PF12846.2 gi|307596391|ref|YP_003902708.1| - 0.04 13.3 0.0 0.074 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|307596391|ref|YP_003902708.1| - 0.041 12.6 0.0 0.077 11.7 0.0 1.4 1 0 0 1 1 1 0 ArgK protein FtsK_SpoIIIE PF01580.13 gi|307596391|ref|YP_003902708.1| - 0.044 13.2 0.0 0.097 12.1 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|307596391|ref|YP_003902708.1| - 0.046 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_29 PF13555.1 gi|307596391|ref|YP_003902708.1| - 0.052 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|307596391|ref|YP_003902708.1| - 0.055 13.7 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|307596391|ref|YP_003902708.1| - 0.056 12.5 0.1 0.26 10.3 0.0 2.0 2 0 0 2 2 2 0 KaiC Mg_chelatase PF01078.16 gi|307596391|ref|YP_003902708.1| - 0.089 11.9 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|307596391|ref|YP_003902708.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|307596391|ref|YP_003902708.1| - 0.11 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.1 gi|307596391|ref|YP_003902708.1| - 0.14 11.6 0.0 0.54 9.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain GHMP_kinases_N PF00288.21 gi|307596392|ref|YP_003902709.1| - 9.9e-18 63.9 0.1 5.2e-17 61.6 0.0 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|307596392|ref|YP_003902709.1| - 1.3e-15 57.3 0.5 1.3e-15 57.3 0.4 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|307596392|ref|YP_003902709.1| - 5.5e-05 22.3 0.2 0.00013 21.1 0.2 1.7 1 0 0 1 1 1 1 Galactokinase galactose-binding signature RuvB_C PF05491.8 gi|307596392|ref|YP_003902709.1| - 0.016 14.8 0.1 0.064 12.8 0.1 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus Epiglycanin_C PF14654.1 gi|307596393|ref|YP_003902710.1| - 0.81 9.7 5.3 3.2 7.7 3.7 2.0 1 1 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region DUF2545 PF10810.3 gi|307596393|ref|YP_003902710.1| - 7.3 7.0 9.1 9.9 6.6 3.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2545) Col_cuticle_N PF01484.12 gi|307596394|ref|YP_003902711.1| - 0.095 12.4 2.0 0.12 12.0 1.0 1.5 1 1 0 1 1 1 0 Nematode cuticle collagen N-terminal domain SUR7 PF06687.7 gi|307596394|ref|YP_003902711.1| - 0.33 10.4 4.3 0.39 10.2 2.9 1.1 1 0 0 1 1 1 0 SUR7/PalI family MFS_1 PF07690.11 gi|307596395|ref|YP_003902712.1| - 7.5e-33 113.6 59.1 1e-25 90.1 26.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|307596395|ref|YP_003902712.1| - 7.7e-07 28.8 1.2 7.7e-07 28.8 0.8 4.0 5 2 2 7 7 7 1 MFS_1 like family Sugar_tr PF00083.19 gi|307596395|ref|YP_003902712.1| - 3.4e-06 25.9 5.4 3.4e-06 25.9 3.7 3.0 2 1 1 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|307596395|ref|YP_003902712.1| - 8.3e-06 24.1 22.1 1.2e-05 23.6 15.1 1.3 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|307596395|ref|YP_003902712.1| - 0.00089 17.7 37.9 0.053 11.9 10.5 2.7 1 1 1 2 2 2 2 MFS/sugar transport protein Fer4_6 PF12837.2 gi|307596397|ref|YP_003902714.1| - 3.1e-06 26.8 12.0 0.0018 18.0 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|307596397|ref|YP_003902714.1| - 6.4e-06 25.8 8.9 1.1e-05 25.0 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307596397|ref|YP_003902714.1| - 0.00052 19.7 13.0 0.00091 19.0 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|307596397|ref|YP_003902714.1| - 0.0013 19.1 9.6 0.0036 17.6 6.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307596397|ref|YP_003902714.1| - 0.0014 18.1 12.3 0.0017 17.8 2.3 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|307596397|ref|YP_003902714.1| - 0.087 13.1 11.1 0.27 11.5 7.8 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|307596397|ref|YP_003902714.1| - 0.15 11.9 11.5 1.4 8.8 8.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|307596397|ref|YP_003902714.1| - 2.5 8.1 12.2 1.3 9.1 2.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|307596397|ref|YP_003902714.1| - 3.2 8.5 16.6 0.73 10.5 3.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_MA_2 PF13485.1 gi|307596398|ref|YP_003902715.1| - 0.0017 18.4 0.9 0.0054 16.7 0.2 2.1 2 0 0 2 2 2 1 Peptidase MA superfamily Big_1 PF02369.11 gi|307596398|ref|YP_003902715.1| - 0.0038 17.1 0.9 0.021 14.6 0.7 2.4 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) ABC2_membrane PF01061.19 gi|307596400|ref|YP_003902717.1| - 1.1e-13 50.8 26.6 1.1e-13 50.8 18.5 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|307596400|ref|YP_003902717.1| - 4.7e-06 25.8 28.5 4.7e-06 25.8 19.8 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|307596400|ref|YP_003902717.1| - 0.12 11.2 29.1 0.78 8.5 20.2 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|307596401|ref|YP_003902718.1| - 5.4e-25 88.2 0.0 9.8e-25 87.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|307596401|ref|YP_003902718.1| - 7.2e-16 58.9 0.0 8.1e-11 42.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|307596401|ref|YP_003902718.1| - 0.00016 21.2 0.1 0.077 12.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|307596401|ref|YP_003902718.1| - 0.00044 19.7 0.0 0.00094 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|307596401|ref|YP_003902718.1| - 0.0012 19.0 0.0 0.021 15.0 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|307596401|ref|YP_003902718.1| - 0.0033 18.2 1.1 0.011 16.6 0.7 2.2 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|307596401|ref|YP_003902718.1| - 0.007 16.8 0.0 0.014 15.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SRP54 PF00448.17 gi|307596401|ref|YP_003902718.1| - 0.0088 15.5 0.1 0.013 14.8 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MukB PF04310.7 gi|307596401|ref|YP_003902718.1| - 0.029 13.7 0.0 0.074 12.3 0.0 1.7 2 0 0 2 2 2 0 MukB N-terminal AAA_5 PF07728.9 gi|307596401|ref|YP_003902718.1| - 0.042 13.5 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|307596401|ref|YP_003902718.1| - 0.057 13.3 0.0 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|307596401|ref|YP_003902718.1| - 0.09 13.0 1.2 0.32 11.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|307596401|ref|YP_003902718.1| - 0.15 12.3 0.1 0.27 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|307596401|ref|YP_003902718.1| - 0.16 11.7 0.9 0.36 10.5 0.1 2.0 2 0 0 2 2 2 0 Part of AAA domain Rad17 PF03215.10 gi|307596401|ref|YP_003902718.1| - 0.16 10.6 0.0 0.19 10.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein SMC_N PF02463.14 gi|307596401|ref|YP_003902718.1| - 0.18 11.0 0.0 19 4.3 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain KH_5 PF13184.1 gi|307596402|ref|YP_003902719.1| - 3e-06 26.9 1.4 8.2e-06 25.5 0.6 2.0 2 0 0 2 2 2 1 NusA-like KH domain Pox_VLTF3 PF04947.9 gi|307596402|ref|YP_003902719.1| - 0.0086 15.6 0.1 0.013 15.0 0.1 1.2 1 0 0 1 1 1 1 Poxvirus Late Transcription Factor VLTF3 like Arg_tRNA_synt_N PF03485.11 gi|307596402|ref|YP_003902719.1| - 0.028 14.9 0.1 0.065 13.7 0.0 1.6 2 0 0 2 2 2 0 Arginyl tRNA synthetase N terminal domain zf-ribbon_3 PF13248.1 gi|307596402|ref|YP_003902719.1| - 7.3 5.9 6.7 2 7.7 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain tRNA-synt_2 PF00152.15 gi|307596403|ref|YP_003902720.1| - 1.5e-88 296.7 0.2 2.3e-88 296.1 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|307596403|ref|YP_003902720.1| - 8.7e-10 38.3 0.6 1.6e-09 37.4 0.4 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|307596403|ref|YP_003902720.1| - 0.0039 16.4 0.2 0.22 10.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) EamA PF00892.15 gi|307596404|ref|YP_003902721.1| - 2e-06 27.8 6.4 2e-06 27.8 4.4 2.6 1 1 0 2 2 2 2 EamA-like transporter family Sugar_tr PF00083.19 gi|307596405|ref|YP_003902722.1| - 3.4e-20 72.0 34.3 3.4e-20 72.0 23.8 2.3 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|307596405|ref|YP_003902722.1| - 1.6e-14 53.3 36.2 1.6e-14 53.3 25.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_Mycoplasma PF07672.8 gi|307596405|ref|YP_003902722.1| - 0.016 14.3 2.1 0.016 14.3 1.5 4.4 3 1 2 5 5 5 0 Mycoplasma MFS transporter Ribosomal_L18p PF00861.17 gi|307596406|ref|YP_003902723.1| - 3.6e-36 123.9 0.7 5.1e-36 123.4 0.5 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|307596406|ref|YP_003902723.1| - 3.1e-13 50.0 0.2 6.7e-13 49.0 0.1 1.5 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|307596407|ref|YP_003902724.1| - 1e-48 164.8 5.4 1.2e-48 164.6 3.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e RNA_pol_Rpb2_4 PF04566.8 gi|307596407|ref|YP_003902724.1| - 0.29 10.9 3.5 0.42 10.4 0.0 2.2 1 1 1 2 2 2 0 RNA polymerase Rpb2, domain 4 HTH_17 PF12728.2 gi|307596407|ref|YP_003902724.1| - 9.8 6.5 8.5 41 4.5 1.2 3.5 3 3 0 3 3 3 0 Helix-turn-helix domain HycI PF01750.13 gi|307596409|ref|YP_003902726.1| - 6.8e-06 25.6 0.0 8.5e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease AP_endonuc_2 PF01261.19 gi|307596409|ref|YP_003902726.1| - 0.02 14.1 0.0 0.029 13.6 0.0 1.2 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel NiFeSe_Hases PF00374.14 gi|307596410|ref|YP_003902727.1| - 8.4e-43 146.8 0.8 1.2e-24 87.0 0.8 3.7 2 2 0 3 3 3 3 Nickel-dependent hydrogenase PPO1_DWL PF12142.3 gi|307596411|ref|YP_003902728.1| - 0.19 11.2 5.1 3.3 7.3 0.3 2.9 2 1 1 3 3 3 0 Polyphenol oxidase middle domain HycI PF01750.13 gi|307596412|ref|YP_003902729.1| - 2.1e-05 24.0 0.1 0.079 12.5 0.0 2.0 2 0 0 2 2 2 2 Hydrogenase maturation protease Reprolysin_5 PF13688.1 gi|307596413|ref|YP_003902730.1| - 0.41 10.5 1.8 1.1 9.0 1.2 1.7 1 1 0 1 1 1 0 Metallo-peptidase family M12 TrmB PF01978.14 gi|307596414|ref|YP_003902731.1| - 0.0012 18.5 0.6 0.0032 17.1 0.1 1.9 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|307596414|ref|YP_003902731.1| - 0.0019 17.7 0.0 0.0035 16.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|307596414|ref|YP_003902731.1| - 0.0049 16.2 0.5 0.01 15.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|307596414|ref|YP_003902731.1| - 0.019 14.7 0.6 0.053 13.3 0.4 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_9 PF08221.6 gi|307596414|ref|YP_003902731.1| - 0.025 14.4 0.5 0.25 11.2 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_5 PF01022.15 gi|307596414|ref|YP_003902731.1| - 0.079 12.6 0.0 0.31 10.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family YrvL PF14184.1 gi|307596414|ref|YP_003902731.1| - 0.23 11.2 3.6 1.2 8.9 2.5 2.0 1 1 0 1 1 1 0 Regulatory protein YrvL NiFe_hyd_SSU_C PF14720.1 gi|307596415|ref|YP_003902732.1| - 4.6e-25 87.4 2.3 8.2e-25 86.6 1.6 1.4 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.17 gi|307596415|ref|YP_003902732.1| - 4.7e-17 61.8 0.0 1.4e-16 60.2 0.0 1.9 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.4 gi|307596415|ref|YP_003902732.1| - 0.072 13.1 0.8 0.072 13.1 0.5 3.7 4 0 0 4 4 4 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N PF00033.14 gi|307596416|ref|YP_003902733.1| - 5.7e-08 32.3 16.0 5.7e-08 32.3 11.1 2.3 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB ABC2_membrane_4 PF12730.2 gi|307596417|ref|YP_003902734.1| - 0.0055 15.9 2.3 0.0055 15.9 1.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|307596417|ref|YP_003902734.1| - 0.088 11.8 2.4 0.11 11.5 1.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1469 PF07332.6 gi|307596417|ref|YP_003902734.1| - 0.28 10.9 3.1 0.35 10.6 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF3687 PF12459.3 gi|307596417|ref|YP_003902734.1| - 0.33 10.2 3.9 0.71 9.1 2.7 1.5 1 0 0 1 1 1 0 D-Ala-teichoic acid biosynthesis protein HypD PF01924.11 gi|307596418|ref|YP_003902735.1| - 1.4e-122 408.8 0.0 1.7e-122 408.6 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.1 gi|307596418|ref|YP_003902735.1| - 0.046 13.5 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 zf-RING of BARD1-type protein HupF_HypC PF01455.13 gi|307596419|ref|YP_003902736.1| - 1.6e-13 50.4 1.1 2.2e-13 49.9 0.2 1.6 2 0 0 2 2 2 1 HupF/HypC family Sua5_yciO_yrdC PF01300.13 gi|307596420|ref|YP_003902737.1| - 1.3e-46 158.1 0.0 1.9e-46 157.5 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|307596420|ref|YP_003902737.1| - 1.6e-25 88.1 14.8 6.5e-14 51.0 2.8 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|307596420|ref|YP_003902737.1| - 2.7e-20 72.2 0.1 5.2e-20 71.3 0.1 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|307596420|ref|YP_003902737.1| - 0.0034 16.9 0.0 0.18 11.2 0.0 2.1 2 0 0 2 2 2 1 Glycoprotease family AIRS_C PF02769.17 gi|307596421|ref|YP_003902738.1| - 6.7e-19 68.4 0.0 1e-18 67.8 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|307596421|ref|YP_003902738.1| - 4.3e-15 55.7 0.1 2.8e-14 53.1 0.0 2.1 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain CW_binding_2 PF04122.7 gi|307596421|ref|YP_003902738.1| - 0.14 12.3 0.0 3.1 8.0 0.0 2.5 2 0 0 2 2 2 0 Putative cell wall binding repeat 2 Lactamase_B_3 PF13483.1 gi|307596422|ref|YP_003902739.1| - 1.8e-19 70.0 0.1 2.2e-19 69.7 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|307596422|ref|YP_003902739.1| - 1.9e-12 47.1 0.2 1.7e-11 44.0 0.1 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PDZ_2 PF13180.1 gi|307596422|ref|YP_003902739.1| - 0.022 14.6 0.4 2.3 8.1 0.1 2.5 1 1 1 2 2 2 0 PDZ domain NicO PF03824.11 gi|307596423|ref|YP_003902740.1| - 2.3e-86 289.6 9.1 2.3e-86 289.6 6.3 1.8 1 1 1 2 2 2 1 High-affinity nickel-transport protein DUF423 PF04241.10 gi|307596423|ref|YP_003902740.1| - 9.3 6.2 10.7 0.079 12.8 0.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF423) DUF364 PF04016.7 gi|307596424|ref|YP_003902741.1| - 5.5e-32 110.1 0.0 8e-32 109.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|307596424|ref|YP_003902741.1| - 7.4e-12 45.2 0.0 1.5e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) PaREP1 PF05942.6 gi|307596425|ref|YP_003902742.1| - 2e-25 88.8 2.7 2.8e-25 88.4 1.9 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|307596425|ref|YP_003902742.1| - 0.28 11.0 3.1 0.18 11.7 1.1 1.4 2 0 0 2 2 2 0 HEPN domain NikR_C PF08753.6 gi|307596426|ref|YP_003902743.1| - 3.1e-17 62.2 1.1 4.4e-17 61.7 0.7 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|307596426|ref|YP_003902743.1| - 0.021 14.6 1.2 0.068 13.0 0.2 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF276 PF03434.8 gi|307596426|ref|YP_003902743.1| - 0.07 12.0 0.1 0.1 11.5 0.1 1.2 1 0 0 1 1 1 0 DUF276 AMP-binding PF00501.23 gi|307596427|ref|YP_003902744.1| - 4.8e-49 166.8 0.4 4.4e-31 107.6 0.5 2.1 2 0 0 2 2 2 2 AMP-binding enzyme AMP-binding_C PF13193.1 gi|307596427|ref|YP_003902744.1| - 2.5e-07 31.5 0.3 1.3e-06 29.2 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain POTRA_1 PF08478.5 gi|307596427|ref|YP_003902744.1| - 0.031 14.3 0.0 0.077 13.0 0.0 1.6 1 0 0 1 1 1 0 POTRA domain, FtsQ-type HypA PF01155.14 gi|307596428|ref|YP_003902745.1| - 8.3e-27 93.1 0.1 9.3e-27 92.9 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|307596428|ref|YP_003902745.1| - 1.1e-05 24.6 0.5 0.027 13.7 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-FPG_IleRS PF06827.9 gi|307596428|ref|YP_003902745.1| - 0.0019 17.8 1.0 0.17 11.5 0.1 2.3 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.1 gi|307596428|ref|YP_003902745.1| - 0.0041 16.2 0.1 2 7.7 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|307596428|ref|YP_003902745.1| - 0.018 15.3 0.1 0.7 10.2 0.0 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar Rubredoxin PF00301.15 gi|307596428|ref|YP_003902745.1| - 0.02 14.7 0.6 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|307596428|ref|YP_003902745.1| - 0.022 14.6 0.1 0.8 9.7 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Mu-like_Com PF10122.4 gi|307596428|ref|YP_003902745.1| - 0.028 13.4 1.3 2.2 7.3 0.1 2.4 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-ISL3 PF14690.1 gi|307596428|ref|YP_003902745.1| - 0.038 14.0 0.5 6.1 6.9 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|307596428|ref|YP_003902745.1| - 0.038 13.5 0.5 7.4 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|307596428|ref|YP_003902745.1| - 0.043 13.5 0.6 8.2 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|307596428|ref|YP_003902745.1| - 0.052 13.2 2.0 3.1 7.5 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_ribbon_recom PF13408.1 gi|307596428|ref|YP_003902745.1| - 0.074 13.3 1.0 9.9 6.5 0.0 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain ALIX_LYPXL_bnd PF13949.1 gi|307596428|ref|YP_003902745.1| - 0.089 11.7 0.3 0.19 10.6 0.1 1.5 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV Dpoe2NT PF12213.3 gi|307596428|ref|YP_003902745.1| - 0.091 12.6 0.6 0.22 11.4 0.4 1.6 2 0 0 2 2 2 0 DNA polymerases epsilon N terminal zinc_ribbon_2 PF13240.1 gi|307596428|ref|YP_003902745.1| - 0.16 11.4 2.6 10 5.7 1.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|307596428|ref|YP_003902745.1| - 0.2 11.6 3.1 1.8 8.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.2 gi|307596428|ref|YP_003902745.1| - 1.4 8.9 6.0 4.9 7.2 0.1 2.8 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 CbiA PF01656.18 gi|307596429|ref|YP_003902746.1| - 2.1e-12 46.8 0.0 2.6e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|307596429|ref|YP_003902746.1| - 1.6e-11 43.9 0.1 3.1e-11 42.9 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|307596429|ref|YP_003902746.1| - 5.7e-09 36.0 0.1 1.3e-06 28.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|307596429|ref|YP_003902746.1| - 1.6e-08 34.0 0.1 2.1e-06 26.9 0.1 2.9 2 1 1 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|307596429|ref|YP_003902746.1| - 0.00014 21.0 0.0 0.00021 20.4 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|307596429|ref|YP_003902746.1| - 0.011 15.0 0.4 0.018 14.4 0.3 1.5 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|307596429|ref|YP_003902746.1| - 0.018 14.2 0.1 0.15 11.1 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|307596429|ref|YP_003902746.1| - 0.033 13.8 0.1 0.62 9.7 0.1 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ADH_N PF08240.7 gi|307596430|ref|YP_003902747.1| - 6.9e-29 99.7 0.4 1.4e-28 98.7 0.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|307596430|ref|YP_003902747.1| - 1.4e-26 92.5 0.3 2.5e-26 91.7 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|307596430|ref|YP_003902747.1| - 1.4e-11 45.3 0.6 3.6e-11 44.0 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|307596430|ref|YP_003902747.1| - 1.7e-05 24.9 1.2 2.6e-05 24.3 0.8 1.3 1 0 0 1 1 1 1 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|307596430|ref|YP_003902747.1| - 4.4e-05 23.1 0.7 7.9e-05 22.2 0.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.8 gi|307596430|ref|YP_003902747.1| - 0.0015 17.7 0.5 0.0023 17.2 0.3 1.4 1 0 0 1 1 1 1 NmrA-like family ELFV_dehydrog PF00208.16 gi|307596430|ref|YP_003902747.1| - 0.038 13.5 0.2 0.061 12.9 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DapB_N PF01113.15 gi|307596430|ref|YP_003902747.1| - 0.044 13.6 0.2 0.51 10.2 0.2 2.4 3 0 0 3 3 3 0 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|307596430|ref|YP_003902747.1| - 0.08 13.4 0.4 0.85 10.1 0.2 2.2 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Epimerase PF01370.16 gi|307596430|ref|YP_003902747.1| - 0.095 12.1 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Semialdhyde_dh PF01118.19 gi|307596430|ref|YP_003902747.1| - 0.1 12.9 0.1 9.6 6.5 0.1 2.4 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain TauE PF01925.14 gi|307596431|ref|YP_003902748.1| - 3.2e-27 95.5 29.6 3.7e-27 95.3 20.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Pyr_redox_2 PF07992.9 gi|307596432|ref|YP_003902749.1| - 4.9e-28 98.3 0.8 7e-28 97.8 0.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|307596432|ref|YP_003902749.1| - 1.1e-10 40.9 4.7 2.5e-07 29.9 1.3 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|307596432|ref|YP_003902749.1| - 4.7e-10 39.8 0.2 6.5e-06 26.3 0.0 2.7 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|307596432|ref|YP_003902749.1| - 5e-09 35.4 9.5 2.9e-08 33.0 1.3 3.6 3 1 1 4 4 4 1 FAD binding domain GIDA PF01134.17 gi|307596432|ref|YP_003902749.1| - 1e-06 27.9 4.7 2.6e-06 26.5 0.6 2.7 2 1 1 3 3 3 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|307596432|ref|YP_003902749.1| - 1.2e-06 28.4 1.1 1.8e-06 27.8 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|307596432|ref|YP_003902749.1| - 1.3e-06 27.7 1.1 1.3e-06 27.7 0.7 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|307596432|ref|YP_003902749.1| - 1.6e-05 23.6 1.0 0.00041 18.9 0.5 2.1 1 1 1 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|307596432|ref|YP_003902749.1| - 3.9e-05 22.8 0.5 3.9e-05 22.8 0.3 1.7 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|307596432|ref|YP_003902749.1| - 0.00016 20.8 0.7 0.00025 20.2 0.5 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|307596432|ref|YP_003902749.1| - 0.0023 17.7 2.5 0.4 10.4 0.0 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|307596432|ref|YP_003902749.1| - 0.011 14.7 0.3 0.02 13.8 0.2 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|307596432|ref|YP_003902749.1| - 0.017 15.5 0.5 0.72 10.3 0.3 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fumerase PF05681.9 gi|307596433|ref|YP_003902750.1| - 1.2e-83 280.2 0.0 1.5e-83 280.0 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) H-K_ATPase_N PF09040.6 gi|307596433|ref|YP_003902750.1| - 0.11 12.5 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain Cecropin PF00272.14 gi|307596433|ref|YP_003902750.1| - 0.3 10.6 0.1 0.3 10.6 0.1 2.4 3 0 0 3 3 3 0 Cecropin family Fumerase_C PF05683.7 gi|307596434|ref|YP_003902751.1| - 1.7e-60 203.6 0.2 2.1e-60 203.3 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus CBS PF00571.23 gi|307596435|ref|YP_003902752.1| - 4.2e-48 160.8 12.3 2.8e-16 59.0 0.2 4.1 4 0 0 4 4 4 4 CBS domain Aldedh PF00171.17 gi|307596436|ref|YP_003902753.1| - 1e-134 449.3 0.0 1.2e-134 449.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Ribosomal_L24e PF01246.15 gi|307596437|ref|YP_003902754.1| - 4.4e-20 71.3 0.6 4.8e-20 71.1 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|307596437|ref|YP_003902754.1| - 8.1e-06 25.3 0.2 1.1e-05 24.9 0.1 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-ribbon_3 PF13248.1 gi|307596437|ref|YP_003902754.1| - 0.033 13.4 0.0 0.055 12.6 0.0 1.4 1 1 0 1 1 1 0 zinc-ribbon domain YHS PF04945.8 gi|307596437|ref|YP_003902754.1| - 0.036 13.9 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 YHS domain DUF581 PF04570.9 gi|307596437|ref|YP_003902754.1| - 0.055 12.7 0.2 0.083 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF581) zf-HIT PF04438.11 gi|307596437|ref|YP_003902754.1| - 0.59 9.8 3.7 2 8.1 2.6 1.8 1 1 0 1 1 1 0 HIT zinc finger DUF2116 PF09889.4 gi|307596437|ref|YP_003902754.1| - 1 9.2 6.9 0.8 9.5 0.2 2.4 2 1 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NUDIX PF00293.23 gi|307596438|ref|YP_003902755.1| - 1.1e-17 63.8 0.0 1.4e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain HhH-GPD PF00730.20 gi|307596439|ref|YP_003902756.1| - 1.4e-18 67.1 0.0 1.9e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|307596439|ref|YP_003902756.1| - 2.1e-05 23.9 1.0 4.5e-05 22.8 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|307596439|ref|YP_003902756.1| - 0.013 15.1 0.0 0.028 14.1 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) HHH_8 PF14716.1 gi|307596439|ref|YP_003902756.1| - 0.014 15.5 0.0 0.14 12.3 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|307596439|ref|YP_003902756.1| - 0.016 15.3 2.9 0.029 14.5 2.0 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|307596439|ref|YP_003902756.1| - 0.029 14.5 0.9 0.13 12.4 0.7 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain Transposase_20 PF02371.11 gi|307596439|ref|YP_003902756.1| - 0.091 12.8 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family Proteasome PF00227.21 gi|307596440|ref|YP_003902757.1| - 6.3e-48 162.5 0.0 7.2e-48 162.4 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF849 PF05853.7 gi|307596440|ref|YP_003902757.1| - 0.042 12.7 0.0 0.049 12.5 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) FKBP_C PF00254.23 gi|307596441|ref|YP_003902758.1| - 1.3e-09 37.9 0.1 3.1e-09 36.7 0.1 2.0 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF3553 PF12073.3 gi|307596441|ref|YP_003902758.1| - 0.028 13.7 1.8 0.043 13.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3553) MS_channel PF00924.13 gi|307596441|ref|YP_003902758.1| - 0.051 12.9 1.3 1 8.6 0.2 2.4 1 1 1 2 2 2 0 Mechanosensitive ion channel DUF131 PF01998.12 gi|307596442|ref|YP_003902759.1| - 1.4e-18 66.0 4.1 1.4e-18 66.0 2.8 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 PRA1 PF03208.14 gi|307596442|ref|YP_003902759.1| - 0.0035 16.6 0.3 0.0041 16.4 0.2 1.1 1 0 0 1 1 1 1 PRA1 family protein DUF1980 PF09323.5 gi|307596442|ref|YP_003902759.1| - 0.0056 16.4 0.5 0.019 14.7 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF1980) MFS_1 PF07690.11 gi|307596442|ref|YP_003902759.1| - 0.0075 15.0 0.3 0.0084 14.8 0.2 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily TctB PF07331.6 gi|307596442|ref|YP_003902759.1| - 0.011 15.4 1.7 0.042 13.5 1.2 1.8 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family YwiC PF14256.1 gi|307596442|ref|YP_003902759.1| - 0.014 15.4 0.2 5.5 7.0 0.0 2.1 2 0 0 2 2 2 0 YwiC-like protein CD20 PF04103.10 gi|307596442|ref|YP_003902759.1| - 0.018 14.9 1.3 0.037 13.9 0.0 1.9 2 0 0 2 2 2 0 CD20-like family HemY_N PF07219.8 gi|307596442|ref|YP_003902759.1| - 0.047 13.2 2.7 1.3 8.6 0.0 2.1 2 0 0 2 2 2 0 HemY protein N-terminus DUF202 PF02656.10 gi|307596442|ref|YP_003902759.1| - 0.079 13.1 0.7 0.93 9.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF202) MRAP PF15183.1 gi|307596442|ref|YP_003902759.1| - 0.13 11.9 1.1 11 5.6 1.4 2.1 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family Rax2 PF12768.2 gi|307596442|ref|YP_003902759.1| - 0.14 11.3 0.1 0.14 11.3 0.1 2.0 2 0 0 2 2 2 0 Cortical protein marker for cell polarity Phage_Gp23 PF10669.4 gi|307596442|ref|YP_003902759.1| - 0.15 12.2 0.1 0.15 12.2 0.1 1.9 2 0 0 2 2 2 0 Protein gp23 (Bacteriophage A118) DUF2207 PF09972.4 gi|307596442|ref|YP_003902759.1| - 0.16 10.5 3.1 0.28 9.7 2.1 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3671 PF12420.3 gi|307596442|ref|YP_003902759.1| - 0.2 11.6 1.1 0.32 10.9 0.7 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF872 PF05915.7 gi|307596442|ref|YP_003902759.1| - 0.33 10.8 0.0 0.33 10.8 0.0 2.0 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Tic20 PF09685.5 gi|307596442|ref|YP_003902759.1| - 0.39 10.6 7.5 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Tic20-like protein Baculo_11_kDa PF06143.6 gi|307596442|ref|YP_003902759.1| - 0.43 9.9 5.7 2.8 7.3 0.0 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family EphA2_TM PF14575.1 gi|307596442|ref|YP_003902759.1| - 0.63 10.4 0.0 0.63 10.4 0.0 2.2 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain UPF0104 PF03706.8 gi|307596442|ref|YP_003902759.1| - 0.76 8.9 8.0 8 5.6 0.0 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0104) COPI_assoc PF08507.5 gi|307596442|ref|YP_003902759.1| - 0.84 9.3 0.0 0.84 9.3 0.0 2.1 1 1 0 2 2 2 0 COPI associated protein SIT PF15330.1 gi|307596442|ref|YP_003902759.1| - 1.1 9.4 0.0 1.1 9.4 0.0 2.1 2 0 0 2 2 1 0 SHP2-interacting transmembrane adaptor protein, SIT Sigma_reg_N PF13800.1 gi|307596442|ref|YP_003902759.1| - 1.3 9.1 7.5 15 5.6 0.0 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal ODV-E18 PF10717.4 gi|307596442|ref|YP_003902759.1| - 1.6 8.2 7.7 3.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 Wzy_C PF04932.10 gi|307596442|ref|YP_003902759.1| - 2.2 8.0 6.7 1.5 8.6 1.9 1.9 2 0 0 2 2 2 0 O-Antigen ligase OppC_N PF12911.2 gi|307596442|ref|YP_003902759.1| - 2.6 7.4 5.8 19 4.7 0.0 2.4 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Tmemb_18A PF09771.4 gi|307596442|ref|YP_003902759.1| - 3.5 7.6 6.0 0.67 9.9 0.7 1.9 2 0 0 2 2 2 0 Transmembrane protein 188 NKAIN PF05640.9 gi|307596442|ref|YP_003902759.1| - 3.9 6.3 6.3 1.3 7.9 0.0 2.0 2 0 0 2 2 2 0 Na,K-Atpase Interacting protein SdpI PF13630.1 gi|307596442|ref|YP_003902759.1| - 5.5 6.7 13.8 7.2 6.3 4.7 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family Peptidase_S49_N PF08496.5 gi|307596442|ref|YP_003902759.1| - 7 6.4 5.5 1.9 8.2 0.0 2.0 2 0 0 2 2 2 0 Peptidase family S49 N-terminal DUF973 PF06157.6 gi|307596442|ref|YP_003902759.1| - 7.5 5.4 12.6 13 4.6 8.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF973) YtpI PF14007.1 gi|307596443|ref|YP_003902760.1| - 0.0026 17.6 0.3 0.0026 17.6 0.2 2.2 2 1 0 2 2 2 1 YtpI-like protein Pox_P21 PF05313.7 gi|307596443|ref|YP_003902760.1| - 0.0029 16.9 4.7 0.0034 16.6 3.2 1.0 1 0 0 1 1 1 1 Poxvirus P21 membrane protein CcmD PF04995.9 gi|307596443|ref|YP_003902760.1| - 0.0078 15.9 0.8 0.0078 15.9 0.5 2.1 2 1 0 2 2 1 1 Heme exporter protein D (CcmD) DUF2370 PF10176.4 gi|307596443|ref|YP_003902760.1| - 0.016 14.5 0.3 0.022 14.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) DUF3278 PF11683.3 gi|307596443|ref|YP_003902760.1| - 0.069 13.1 0.4 0.069 13.1 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3278) DUF898 PF05987.8 gi|307596443|ref|YP_003902760.1| - 0.07 12.0 4.9 0.091 11.6 3.4 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) Nramp PF01566.13 gi|307596443|ref|YP_003902760.1| - 0.084 11.6 4.7 0.089 11.5 3.3 1.0 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein TPPK_C PF12555.3 gi|307596443|ref|YP_003902760.1| - 0.12 12.0 8.6 0.39 10.4 5.9 1.9 1 1 1 2 2 2 0 Thiamine pyrophosphokinase C terminal Photo_RC PF00124.14 gi|307596443|ref|YP_003902760.1| - 0.14 11.1 4.2 0.17 10.8 2.9 1.0 1 0 0 1 1 1 0 Photosynthetic reaction centre protein ABC2_membrane_5 PF13346.1 gi|307596443|ref|YP_003902760.1| - 0.25 10.6 14.5 0.33 10.2 10.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2393 PF09624.5 gi|307596443|ref|YP_003902760.1| - 0.34 10.4 6.7 0.11 12.0 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) Transmemb_17 PF09799.4 gi|307596443|ref|YP_003902760.1| - 0.42 10.9 5.4 1.5 9.2 3.7 1.8 1 1 0 1 1 1 0 Predicted membrane protein DctQ PF04290.7 gi|307596443|ref|YP_003902760.1| - 0.7 9.6 6.7 1.2 8.9 0.5 2.1 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component Tad PF13400.1 gi|307596443|ref|YP_003902760.1| - 0.75 9.8 0.1 0.75 9.8 0.0 2.9 3 0 0 3 3 3 0 Putative Flp pilus-assembly TadE/G-like DUF202 PF02656.10 gi|307596443|ref|YP_003902760.1| - 0.99 9.6 4.3 9.1 6.5 3.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF4231 PF14015.1 gi|307596443|ref|YP_003902760.1| - 0.99 9.4 10.2 12 5.9 7.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF4131 PF13567.1 gi|307596443|ref|YP_003902760.1| - 1.4 8.2 5.1 3 7.2 3.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) 2TM PF13239.1 gi|307596443|ref|YP_003902760.1| - 1.5 8.9 6.5 8.3 6.5 4.5 2.0 1 1 0 1 1 1 0 2TM domain DUF3671 PF12420.3 gi|307596443|ref|YP_003902760.1| - 2 8.4 14.3 5.3 7.0 9.9 1.6 1 1 0 1 1 1 0 Protein of unknown function DUF1206 PF06724.6 gi|307596443|ref|YP_003902760.1| - 2.2 8.1 8.8 1.1 9.0 0.5 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) DUF3043 PF11241.3 gi|307596443|ref|YP_003902760.1| - 2.6 7.6 6.0 0.41 10.2 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3043) DUF3290 PF11694.3 gi|307596443|ref|YP_003902760.1| - 3.1 7.5 5.3 0.97 9.1 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) DUF2214 PF09980.4 gi|307596443|ref|YP_003902760.1| - 3.3 7.4 8.6 4.2 7.1 0.3 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2214) SIT PF15330.1 gi|307596443|ref|YP_003902760.1| - 3.7 7.7 4.5 3 8.0 0.3 2.0 2 0 0 2 2 2 0 SHP2-interacting transmembrane adaptor protein, SIT NfeD PF01957.13 gi|307596443|ref|YP_003902760.1| - 5.9 7.0 11.5 1.7e+02 2.2 8.0 2.0 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding ABC2_membrane_2 PF12679.2 gi|307596443|ref|YP_003902760.1| - 6.2 5.6 12.2 0.72 8.6 3.0 1.9 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF843 PF05814.6 gi|307596443|ref|YP_003902760.1| - 6.8 6.5 6.3 4.5 7.1 0.7 2.2 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) FtsX PF02687.16 gi|307596443|ref|YP_003902760.1| - 7.1 6.4 15.5 22 4.8 10.7 1.7 1 1 0 1 1 1 0 FtsX-like permease family Wzy_C PF04932.10 gi|307596443|ref|YP_003902760.1| - 7.5 6.3 8.0 0.86 9.3 0.8 2.0 2 0 0 2 2 2 0 O-Antigen ligase ODV-E18 PF10717.4 gi|307596443|ref|YP_003902760.1| - 9.1 5.7 7.8 0.75 9.2 1.4 1.9 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 DUF2500 PF10694.4 gi|307596443|ref|YP_003902760.1| - 9.9 6.2 6.1 4.1 7.4 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2500) Aminotran_1_2 PF00155.16 gi|307596444|ref|YP_003902761.1| - 1.2e-24 86.9 0.0 1.5e-24 86.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|307596444|ref|YP_003902761.1| - 1.1e-05 24.2 0.0 1.5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.16 gi|307596444|ref|YP_003902761.1| - 9.5e-05 21.6 0.0 0.00018 20.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase CTP_synth_N PF06418.9 gi|307596446|ref|YP_003902763.1| - 2.2e-126 420.5 0.1 3.5e-126 419.9 0.0 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|307596446|ref|YP_003902763.1| - 1.1e-51 175.0 0.0 1.7e-51 174.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|307596446|ref|YP_003902763.1| - 2.3e-09 37.0 0.0 5.6e-09 35.7 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|307596446|ref|YP_003902763.1| - 3.9e-08 32.9 0.0 6.9e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF4389 PF14333.1 gi|307596448|ref|YP_003902765.1| - 0.023 14.4 0.8 0.028 14.1 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4389) DS PF01916.12 gi|307596449|ref|YP_003902766.1| - 1e-78 264.4 0.0 1.2e-78 264.2 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Methyltransf_31 PF13847.1 gi|307596450|ref|YP_003902767.1| - 1.6e-09 37.5 0.0 2.1e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307596450|ref|YP_003902767.1| - 4.5e-09 36.8 0.0 7e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|307596450|ref|YP_003902767.1| - 2.8e-07 29.9 0.0 3.6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|307596450|ref|YP_003902767.1| - 3.6e-07 30.2 0.0 5.1e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307596450|ref|YP_003902767.1| - 9.5e-06 25.9 0.0 1.5e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|307596450|ref|YP_003902767.1| - 9.6e-05 21.7 0.0 0.00025 20.4 0.0 1.7 1 1 0 1 1 1 1 Histone methylation protein DOT1 HTH_24 PF13412.1 gi|307596450|ref|YP_003902767.1| - 0.00049 19.4 2.5 0.00066 19.0 1.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MTS PF05175.9 gi|307596450|ref|YP_003902767.1| - 0.00079 18.8 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|307596450|ref|YP_003902767.1| - 0.00086 18.8 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF2172 PF09940.4 gi|307596450|ref|YP_003902767.1| - 0.0012 17.3 0.1 0.0018 16.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2172) RrnaAD PF00398.15 gi|307596450|ref|YP_003902767.1| - 0.0013 17.8 0.0 0.0026 16.8 0.0 1.5 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|307596450|ref|YP_003902767.1| - 0.0023 17.0 0.0 0.0038 16.2 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|307596450|ref|YP_003902767.1| - 0.0032 17.1 0.0 0.0056 16.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|307596450|ref|YP_003902767.1| - 0.0036 17.7 0.0 0.0063 16.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|307596450|ref|YP_003902767.1| - 0.0038 16.3 0.0 0.0071 15.4 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_23 PF13489.1 gi|307596450|ref|YP_003902767.1| - 0.0039 16.9 0.0 0.0059 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF742 PF05331.6 gi|307596450|ref|YP_003902767.1| - 0.0039 16.7 0.0 0.0076 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF742) UPF0020 PF01170.13 gi|307596450|ref|YP_003902767.1| - 0.0053 16.3 0.0 0.0092 15.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TrmB PF01978.14 gi|307596450|ref|YP_003902767.1| - 0.0067 16.1 0.2 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PqqD PF05402.7 gi|307596450|ref|YP_003902767.1| - 0.0067 16.4 0.1 0.02 14.9 0.1 1.9 1 1 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_45 PF14947.1 gi|307596450|ref|YP_003902767.1| - 0.017 14.9 0.2 0.033 14.0 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Methyltransf_8 PF05148.10 gi|307596450|ref|YP_003902767.1| - 0.033 13.8 0.0 0.064 12.8 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_11 PF08241.7 gi|307596450|ref|YP_003902767.1| - 0.037 14.5 0.0 0.058 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|307596450|ref|YP_003902767.1| - 0.054 12.6 0.0 0.081 12.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Rrf2 PF02082.15 gi|307596450|ref|YP_003902767.1| - 0.078 13.1 0.1 0.29 11.2 0.1 2.0 2 0 0 2 2 1 0 Transcriptional regulator MetW PF07021.7 gi|307596450|ref|YP_003902767.1| - 0.093 12.0 0.1 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_24 PF13578.1 gi|307596450|ref|YP_003902767.1| - 0.14 12.9 0.0 0.29 11.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain TFIIE_alpha PF02002.12 gi|307596450|ref|YP_003902767.1| - 0.19 11.2 2.5 0.17 11.4 0.5 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit Rep_fac_C PF08542.6 gi|307596451|ref|YP_003902768.1| - 0.076 13.0 0.6 0.58 10.1 0.1 2.2 1 1 0 2 2 2 0 Replication factor C C-terminal domain Peptidase_M48 PF01435.13 gi|307596452|ref|YP_003902769.1| - 9.7e-21 74.3 0.0 1.9e-20 73.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_U49 PF10463.4 gi|307596452|ref|YP_003902769.1| - 0.041 13.6 0.3 5.9 6.6 0.0 2.7 2 1 0 2 2 2 0 Peptidase U49 Peptidase_MA_2 PF13485.1 gi|307596452|ref|YP_003902769.1| - 0.15 12.0 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily DUF4029 PF13221.1 gi|307596452|ref|YP_003902769.1| - 6.6 7.1 14.4 3.1 8.2 2.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF4029) CAAD PF14159.1 gi|307596452|ref|YP_003902769.1| - 8.5 6.0 13.7 0.14 11.8 1.6 2.5 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Alpha-amyl_C PF09071.5 gi|307596453|ref|YP_003902770.1| - 0.071 12.8 0.1 4.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Alpha-amylase, C terminal RloB PF13707.1 gi|307596453|ref|YP_003902770.1| - 0.11 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 RloB-like protein AAA_10 PF12846.2 gi|307596454|ref|YP_003902771.1| - 1.6e-11 44.2 0.0 7.6e-05 22.2 0.0 2.3 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|307596454|ref|YP_003902771.1| - 2.7e-10 40.4 1.2 7.3e-10 39.0 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|307596454|ref|YP_003902771.1| - 0.00093 19.3 0.1 0.38 10.8 0.1 2.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|307596454|ref|YP_003902771.1| - 0.0024 17.6 2.0 0.027 14.1 0.3 2.6 2 1 0 2 2 2 1 Archaeal ATPase PspB PF06667.7 gi|307596454|ref|YP_003902771.1| - 0.035 14.0 0.5 0.035 14.0 0.4 2.3 3 0 0 3 3 3 0 Phage shock protein B FtsK_SpoIIIE PF01580.13 gi|307596454|ref|YP_003902771.1| - 0.041 13.3 0.0 0.088 12.2 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|307596454|ref|YP_003902771.1| - 0.075 12.9 0.0 0.76 9.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain Helicase_C_2 PF13307.1 gi|307596455|ref|YP_003902772.1| - 5.5e-18 65.4 0.0 9.5e-18 64.7 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|307596455|ref|YP_003902772.1| - 1e-08 34.7 0.1 1.8e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 AAA_19 PF13245.1 gi|307596455|ref|YP_003902772.1| - 0.0056 16.3 0.0 0.027 14.2 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|307596455|ref|YP_003902772.1| - 0.02 14.2 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|307596455|ref|YP_003902772.1| - 0.05 12.8 0.0 0.24 10.6 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_22 PF13401.1 gi|307596455|ref|YP_003902772.1| - 0.13 12.3 0.0 2 8.5 0.0 2.5 2 1 0 2 2 2 0 AAA domain FANCI_S1 PF14675.1 gi|307596456|ref|YP_003902773.1| - 0.0055 16.0 0.1 0.0075 15.6 0.1 1.2 1 0 0 1 1 1 1 FANCI solenoid 1 MIF4G PF02854.14 gi|307596456|ref|YP_003902773.1| - 0.0074 15.7 0.3 0.011 15.1 0.2 1.2 1 0 0 1 1 1 1 MIF4G domain DUF3610 PF12272.3 gi|307596456|ref|YP_003902773.1| - 0.058 13.0 0.7 0.073 12.7 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3610) Endonuc_BglI PF14562.1 gi|307596456|ref|YP_003902773.1| - 0.11 11.2 0.9 0.34 9.7 0.1 1.8 1 1 0 2 2 2 0 Restriction endonuclease BglI CRM1_C PF08767.6 gi|307596456|ref|YP_003902773.1| - 0.13 11.1 0.4 0.19 10.6 0.3 1.3 1 1 0 1 1 1 0 CRM1 C terminal BEN PF10523.4 gi|307596456|ref|YP_003902773.1| - 0.15 12.1 1.3 0.35 10.9 0.1 2.1 2 1 0 2 2 2 0 BEN domain TatD_DNase PF01026.16 gi|307596457|ref|YP_003902774.1| - 1.3e-47 162.1 0.0 1.5e-47 161.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase YbjQ_1 PF01906.12 gi|307596457|ref|YP_003902774.1| - 0.11 12.9 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 Putative heavy-metal-binding zf-C4_Topoisom PF01396.14 gi|307596458|ref|YP_003902775.1| - 0.039 13.4 1.1 0.19 11.2 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.7 gi|307596458|ref|YP_003902775.1| - 0.046 13.4 1.9 1 9.2 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ISL3 PF14690.1 gi|307596458|ref|YP_003902775.1| - 0.053 13.5 3.7 0.2 11.7 0.1 2.7 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|307596458|ref|YP_003902775.1| - 0.059 13.6 0.2 0.1 12.9 0.1 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C4pol PF14260.1 gi|307596458|ref|YP_003902775.1| - 0.068 13.1 0.1 0.099 12.6 0.1 1.2 1 0 0 1 1 1 0 C4-type zinc-finger of DNA polymerase delta DUF3268 PF11672.3 gi|307596458|ref|YP_003902775.1| - 0.21 11.6 1.0 0.42 10.7 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) Nudix_N_2 PF14803.1 gi|307596458|ref|YP_003902775.1| - 1.1 9.0 3.5 7.1 6.4 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal AAA_assoc_C PF09821.4 gi|307596459|ref|YP_003902776.1| - 2.6e-24 85.8 0.0 3.8e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain RE_AlwI PF09491.5 gi|307596459|ref|YP_003902776.1| - 0.011 14.1 0.1 0.014 13.8 0.0 1.2 1 0 0 1 1 1 0 AlwI restriction endonuclease DUF2042 PF09743.4 gi|307596460|ref|YP_003902777.1| - 0.048 12.9 0.0 0.054 12.8 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) Tetrabrachion PF11401.3 gi|307596460|ref|YP_003902777.1| - 0.069 12.9 0.1 0.15 11.8 0.1 1.5 1 0 0 1 1 1 0 Tetrabrachion TyeA PF09059.5 gi|307596460|ref|YP_003902777.1| - 0.088 12.7 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 TyeA lci PF12197.3 gi|307596460|ref|YP_003902777.1| - 0.1 12.2 0.1 0.57 9.7 0.0 2.1 2 0 0 2 2 2 0 Bacillus cereus group antimicrobial protein Aldolase_2 PF10120.4 gi|307596462|ref|YP_003902779.1| - 3.3e-41 140.4 0.2 5.1e-41 139.8 0.1 1.3 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|307596462|ref|YP_003902779.1| - 9.8e-05 22.1 0.5 0.0012 18.6 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix HTH_23 PF13384.1 gi|307596462|ref|YP_003902779.1| - 0.00047 19.7 0.1 0.0036 16.9 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.1 gi|307596462|ref|YP_003902779.1| - 0.018 14.8 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|307596462|ref|YP_003902779.1| - 0.026 13.9 0.1 0.092 12.1 0.1 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RepB PF07506.6 gi|307596462|ref|YP_003902779.1| - 0.033 14.0 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 RepB plasmid partitioning protein RimK PF08443.6 gi|307596463|ref|YP_003902780.1| - 2.4e-42 144.5 0.0 3e-42 144.2 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|307596463|ref|YP_003902780.1| - 1.9e-14 53.1 0.0 2.9e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|307596463|ref|YP_003902780.1| - 1.3e-10 41.2 0.0 2.1e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|307596463|ref|YP_003902780.1| - 2e-07 30.9 0.0 6.3e-07 29.4 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|307596463|ref|YP_003902780.1| - 6.5e-06 25.1 0.0 0.0009 18.0 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon UbiD PF01977.11 gi|307596464|ref|YP_003902781.1| - 2.2e-103 345.9 0.1 2.5e-103 345.7 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MR_MLE_C PF13378.1 gi|307596465|ref|YP_003902782.1| - 3.3e-26 91.4 0.0 5.3e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|307596465|ref|YP_003902782.1| - 5.4e-23 81.3 0.1 1.2e-22 80.1 0.1 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|307596465|ref|YP_003902782.1| - 3.3e-09 36.7 0.0 6e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF2798 PF11391.3 gi|307596465|ref|YP_003902782.1| - 0.16 11.7 0.5 0.34 10.6 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2798) DUF92 PF01940.11 gi|307596466|ref|YP_003902783.1| - 0.038 13.1 0.0 0.039 13.1 0.0 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF92 PSII_Pbs27 PF13326.1 gi|307596467|ref|YP_003902784.1| - 0.0056 16.6 0.0 0.05 13.5 0.0 2.5 3 0 0 3 3 3 1 Photosystem II Pbs27 LAGLIDADG_3 PF14528.1 gi|307596467|ref|YP_003902784.1| - 0.0069 16.6 0.3 2.5 8.3 0.1 3.4 3 0 0 3 3 3 1 LAGLIDADG-like domain PPR_3 PF13812.1 gi|307596467|ref|YP_003902784.1| - 0.17 12.2 0.3 48 4.5 0.0 3.8 3 0 0 3 3 3 0 Pentatricopeptide repeat domain Ribosomal_S27 PF01599.14 gi|307596468|ref|YP_003902785.1| - 1.9e-09 37.1 1.0 2.5e-09 36.7 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|307596468|ref|YP_003902785.1| - 0.00011 21.9 1.5 0.00016 21.3 1.0 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|307596468|ref|YP_003902785.1| - 0.00021 20.8 0.2 0.00023 20.7 0.1 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain GFA PF04828.9 gi|307596468|ref|YP_003902785.1| - 0.0019 18.0 1.0 0.94 9.4 0.0 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme Auto_anti-p27 PF06677.7 gi|307596468|ref|YP_003902785.1| - 0.0025 17.5 0.2 0.28 10.9 0.0 2.1 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|307596468|ref|YP_003902785.1| - 0.0074 15.4 1.3 0.68 9.2 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|307596468|ref|YP_003902785.1| - 0.011 15.3 0.2 0.024 14.2 0.2 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|307596468|ref|YP_003902785.1| - 0.014 15.1 0.4 0.023 14.4 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon YhfH PF14149.1 gi|307596468|ref|YP_003902785.1| - 0.018 14.8 0.0 2 8.2 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.7 gi|307596468|ref|YP_003902785.1| - 0.022 14.0 2.8 0.24 10.7 0.2 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|307596468|ref|YP_003902785.1| - 0.023 14.1 3.1 0.31 10.5 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L37e PF01907.14 gi|307596468|ref|YP_003902785.1| - 0.025 14.3 0.8 0.042 13.6 0.6 1.5 1 0 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.1 gi|307596468|ref|YP_003902785.1| - 0.026 14.0 1.2 2.1 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|307596468|ref|YP_003902785.1| - 0.034 13.8 6.5 1.1 9.0 4.5 2.2 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-ISL3 PF14690.1 gi|307596468|ref|YP_003902785.1| - 0.039 13.9 5.7 0.16 12.0 0.5 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RRN7 PF11781.3 gi|307596468|ref|YP_003902785.1| - 0.044 13.2 1.0 2.6 7.6 0.0 2.4 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 IBR PF01485.16 gi|307596468|ref|YP_003902785.1| - 0.057 13.3 0.2 0.062 13.1 0.1 1.1 1 0 0 1 1 1 0 IBR domain Ribosomal_L32p PF01783.18 gi|307596468|ref|YP_003902785.1| - 0.096 12.8 0.8 2 8.6 0.1 2.1 1 1 1 2 2 2 0 Ribosomal L32p protein family Nudix_N_2 PF14803.1 gi|307596468|ref|YP_003902785.1| - 0.096 12.3 5.8 0.52 10.0 3.7 2.1 1 1 0 1 1 1 0 Nudix N-terminal DUF1936 PF09151.5 gi|307596468|ref|YP_003902785.1| - 0.11 12.0 3.7 13 5.3 0.6 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF1936) A2L_zn_ribbon PF08792.5 gi|307596468|ref|YP_003902785.1| - 0.11 11.9 0.5 7.9 6.0 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2_4 PF13894.1 gi|307596468|ref|YP_003902785.1| - 0.11 12.8 1.0 17 6.0 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2387 PF09526.5 gi|307596468|ref|YP_003902785.1| - 0.13 12.1 0.6 0.22 11.4 0.4 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Baculo_ME53 PF06061.6 gi|307596468|ref|YP_003902785.1| - 0.14 11.0 0.3 0.16 10.9 0.2 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 DUF2296 PF10058.4 gi|307596468|ref|YP_003902785.1| - 0.19 11.5 1.6 0.39 10.4 1.1 1.6 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-CCHC_4 PF14392.1 gi|307596468|ref|YP_003902785.1| - 0.28 10.8 5.2 0.55 9.9 1.2 2.5 2 1 0 2 2 2 0 Zinc knuckle Rpr2 PF04032.11 gi|307596468|ref|YP_003902785.1| - 0.29 11.0 1.4 1.2 9.0 0.1 2.0 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_5 PF13719.1 gi|307596468|ref|YP_003902785.1| - 0.31 10.6 2.1 19 4.9 0.0 2.6 3 0 0 3 3 3 0 zinc-ribbon domain FeS PF04060.8 gi|307596468|ref|YP_003902785.1| - 0.38 10.3 0.1 0.38 10.3 0.1 1.7 2 0 0 2 2 2 0 Putative Fe-S cluster Zn_ribbon_recom PF13408.1 gi|307596468|ref|YP_003902785.1| - 2 8.7 5.7 21 5.4 4.3 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DUF35_N PF12172.3 gi|307596468|ref|YP_003902785.1| - 5.2 7.1 7.1 7.4 6.6 0.6 2.1 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Glycos_transf_1 PF00534.15 gi|307596469|ref|YP_003902786.1| - 1.1e-44 151.9 0.0 1.6e-44 151.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|307596469|ref|YP_003902786.1| - 3.7e-23 82.4 0.1 8.3e-23 81.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|307596469|ref|YP_003902786.1| - 2.2e-19 69.9 2.4 2.9e-16 59.7 1.7 2.4 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|307596469|ref|YP_003902786.1| - 3.2e-17 62.8 0.2 8e-17 61.5 0.2 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|307596469|ref|YP_003902786.1| - 1.1e-16 61.1 2.0 2e-16 60.3 0.0 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|307596469|ref|YP_003902786.1| - 1.6e-13 50.7 0.0 3.2e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|307596469|ref|YP_003902786.1| - 2.9e-05 23.9 0.0 7e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycogen_syn PF05693.8 gi|307596469|ref|YP_003902786.1| - 0.0058 14.9 0.2 0.35 9.0 0.0 2.8 3 0 0 3 3 3 1 Glycogen synthase AAA_18 PF13238.1 gi|307596470|ref|YP_003902787.1| - 2.9e-11 43.7 0.0 5.5e-11 42.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|307596470|ref|YP_003902787.1| - 1.5e-07 32.2 0.2 2.2e-07 31.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|307596470|ref|YP_003902787.1| - 0.00052 19.9 0.0 0.001 18.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|307596470|ref|YP_003902787.1| - 0.0022 17.3 0.7 0.59 9.4 0.1 2.5 1 1 0 2 2 2 2 Thymidylate kinase AAA_28 PF13521.1 gi|307596470|ref|YP_003902787.1| - 0.033 14.1 0.0 0.075 12.9 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|307596470|ref|YP_003902787.1| - 0.038 14.1 0.0 0.065 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|307596470|ref|YP_003902787.1| - 0.061 12.4 0.0 0.11 11.5 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin DJ-1_PfpI PF01965.19 gi|307596471|ref|YP_003902788.1| - 4.6e-05 22.9 0.0 7.6e-05 22.1 0.0 1.4 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|307596471|ref|YP_003902788.1| - 0.062 12.5 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative amidotransferase Fe-ADH_2 PF13685.1 gi|307596472|ref|YP_003902789.1| - 8e-55 185.8 0.0 9.9e-55 185.5 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|307596472|ref|YP_003902789.1| - 4.1e-23 81.6 0.0 1.5e-22 79.7 0.0 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|307596472|ref|YP_003902789.1| - 1e-10 41.0 0.1 4.2e-10 38.9 0.1 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase PHO4 PF01384.15 gi|307596473|ref|YP_003902790.1| - 2.3e-23 82.3 32.7 5.4e-23 81.1 22.7 1.7 1 1 0 1 1 1 1 Phosphate transporter family Myc_target_1 PF15179.1 gi|307596473|ref|YP_003902790.1| - 0.041 13.4 1.0 0.041 13.4 0.7 2.6 2 0 0 2 2 2 0 Myc target protein 1 Thi4 PF01946.12 gi|307596474|ref|YP_003902791.1| - 1.1e-77 260.2 1.3 1.3e-77 260.0 0.9 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|307596474|ref|YP_003902791.1| - 1.6e-15 56.9 4.1 2e-09 36.8 0.3 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|307596474|ref|YP_003902791.1| - 2.8e-10 39.6 4.5 1.3e-07 30.8 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|307596474|ref|YP_003902791.1| - 6.7e-10 38.8 0.2 1.6e-09 37.6 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|307596474|ref|YP_003902791.1| - 8.4e-10 38.2 1.5 1.2e-09 37.7 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|307596474|ref|YP_003902791.1| - 4.3e-09 36.7 0.1 8.4e-09 35.7 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|307596474|ref|YP_003902791.1| - 3.5e-07 29.5 0.0 5.6e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|307596474|ref|YP_003902791.1| - 3.6e-06 27.0 0.9 5.8e-06 26.3 0.6 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|307596474|ref|YP_003902791.1| - 4.9e-05 21.9 1.0 7.4e-05 21.3 0.7 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|307596474|ref|YP_003902791.1| - 0.00026 21.3 2.5 0.0019 18.5 0.2 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|307596474|ref|YP_003902791.1| - 0.00038 19.4 0.9 0.00038 19.4 0.6 1.4 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|307596474|ref|YP_003902791.1| - 0.0014 17.7 0.1 0.0029 16.7 0.1 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase ThiF PF00899.16 gi|307596474|ref|YP_003902791.1| - 0.0032 17.3 0.1 0.008 15.9 0.1 1.7 1 0 0 1 1 1 1 ThiF family Lycopene_cycl PF05834.7 gi|307596474|ref|YP_003902791.1| - 0.0034 16.3 0.2 0.064 12.1 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Shikimate_DH PF01488.15 gi|307596474|ref|YP_003902791.1| - 0.0038 17.3 0.0 0.0071 16.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.9 gi|307596474|ref|YP_003902791.1| - 0.021 13.4 0.2 0.035 12.7 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|307596474|ref|YP_003902791.1| - 0.043 13.5 0.7 0.15 11.7 0.1 2.0 2 0 0 2 2 2 0 FAD-NAD(P)-binding Arc_trans_TRASH PF08394.5 gi|307596475|ref|YP_003902792.1| - 9.1e-05 22.5 3.6 0.00013 22.0 2.5 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain TF_Zn_Ribbon PF08271.7 gi|307596475|ref|YP_003902792.1| - 0.0055 15.9 0.0 0.0087 15.3 0.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-FCS PF06467.9 gi|307596475|ref|YP_003902792.1| - 0.012 15.2 7.4 0.023 14.3 5.1 1.6 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|307596475|ref|YP_003902792.1| - 0.051 13.4 1.1 0.089 12.6 0.8 1.5 1 1 0 1 1 1 0 YHS domain zf-MYND PF01753.13 gi|307596475|ref|YP_003902792.1| - 0.13 12.1 2.2 0.23 11.3 1.5 1.5 1 1 0 1 1 1 0 MYND finger DUF3330 PF11809.3 gi|307596475|ref|YP_003902792.1| - 0.27 11.1 0.3 0.27 11.1 0.2 1.9 2 1 1 3 3 3 0 Domain of unknown function (DUF3330) DUF329 PF03884.9 gi|307596475|ref|YP_003902792.1| - 1.4 8.5 6.5 5 6.7 4.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zf-C2HC5 PF06221.8 gi|307596475|ref|YP_003902792.1| - 3 7.6 6.9 7.2 6.4 4.8 1.6 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Nitro_FeMo-Co PF02579.12 gi|307596476|ref|YP_003902793.1| - 2.4e-10 40.3 0.0 3.8e-09 36.5 0.0 2.0 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor YmzC PF14157.1 gi|307596476|ref|YP_003902793.1| - 0.031 14.0 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 YmzC-like protein Thioredoxin PF00085.15 gi|307596477|ref|YP_003902794.1| - 3e-23 81.4 0.0 4.3e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|307596477|ref|YP_003902794.1| - 2.5e-06 27.6 0.3 0.00066 19.8 0.0 2.4 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|307596477|ref|YP_003902794.1| - 2.9e-06 27.2 0.1 0.0017 18.4 0.0 2.5 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|307596477|ref|YP_003902794.1| - 0.0012 18.6 0.0 0.0039 16.9 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin domain Phosducin PF02114.11 gi|307596477|ref|YP_003902794.1| - 0.022 13.4 0.0 0.025 13.3 0.0 1.2 1 0 0 1 1 1 0 Phosducin Thioredoxin_9 PF14595.1 gi|307596477|ref|YP_003902794.1| - 0.038 13.5 0.2 0.049 13.2 0.1 1.3 1 1 0 1 1 1 0 Thioredoxin GnsAB PF08178.6 gi|307596477|ref|YP_003902794.1| - 0.078 12.6 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 GnsA/GnsB family Redoxin PF08534.5 gi|307596477|ref|YP_003902794.1| - 0.093 12.2 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Redoxin Thioredoxin_5 PF13743.1 gi|307596477|ref|YP_003902794.1| - 0.1 12.1 0.4 2.5 7.6 0.2 2.1 2 0 0 2 2 2 0 Thioredoxin Aminotran_3 PF00202.16 gi|307596478|ref|YP_003902795.1| - 1e-84 284.3 0.0 1.2e-84 284.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|307596478|ref|YP_003902795.1| - 0.0012 17.8 0.0 0.0018 17.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Succ_CoA_lig PF13607.1 gi|307596479|ref|YP_003902796.1| - 9.9e-48 161.2 0.7 6.3e-46 155.4 0.1 3.3 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|307596479|ref|YP_003902796.1| - 1.2e-23 83.5 1.0 7e-23 81.0 0.3 2.5 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|307596479|ref|YP_003902796.1| - 5.1e-17 62.1 0.6 1.5e-16 60.6 0.4 1.9 1 0 0 1 1 1 1 CoA binding domain Peripla_BP_3 PF13377.1 gi|307596479|ref|YP_003902796.1| - 0.0021 18.0 0.1 2.6 8.0 0.0 3.0 3 1 0 3 3 3 2 Periplasmic binding protein-like domain NAD_Gly3P_dh_N PF01210.18 gi|307596479|ref|YP_003902796.1| - 0.01 15.5 0.1 0.045 13.4 0.0 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VWA_2 PF13519.1 gi|307596479|ref|YP_003902796.1| - 0.016 15.2 0.0 0.075 13.1 0.0 1.9 2 0 0 2 2 2 0 von Willebrand factor type A domain PLDc_2 PF13091.1 gi|307596479|ref|YP_003902796.1| - 0.12 12.0 0.0 0.67 9.7 0.0 2.2 3 0 0 3 3 3 0 PLD-like domain ATP-grasp_5 PF13549.1 gi|307596480|ref|YP_003902797.1| - 2.8e-77 258.8 0.0 3.2e-77 258.7 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|307596480|ref|YP_003902797.1| - 3.4e-07 30.1 0.0 5e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|307596480|ref|YP_003902797.1| - 1.5e-05 24.5 0.0 2.5e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.5 gi|307596480|ref|YP_003902797.1| - 0.00012 21.5 0.0 0.00017 21.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|307596480|ref|YP_003902797.1| - 0.0022 17.3 0.0 0.0041 16.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|307596480|ref|YP_003902797.1| - 0.019 14.2 0.0 0.032 13.5 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Peptidase_M48 PF01435.13 gi|307596481|ref|YP_003902798.1| - 7.5e-31 107.4 0.0 1.2e-30 106.7 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M48 Amastin PF07344.6 gi|307596481|ref|YP_003902798.1| - 0.0085 15.7 1.3 0.0085 15.7 0.9 1.7 2 0 0 2 2 2 1 Amastin surface glycoprotein Peptidase_M56 PF05569.6 gi|307596481|ref|YP_003902798.1| - 0.02 13.8 0.1 0.051 12.5 0.0 1.8 2 0 0 2 2 2 0 BlaR1 peptidase M56 FA_desaturase PF00487.19 gi|307596481|ref|YP_003902798.1| - 0.31 10.4 14.6 1.2 8.5 1.8 2.3 2 0 0 2 2 2 0 Fatty acid desaturase DUF1152 PF06626.7 gi|307596484|ref|YP_003902801.1| - 1.1e-89 300.5 1.5 1.3e-89 300.2 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) YobH PF13996.1 gi|307596485|ref|YP_003902802.1| - 0.065 13.1 1.3 0.16 11.8 0.9 1.7 1 0 0 1 1 1 0 YobH-like protein Phage_rep_org_N PF09681.5 gi|307596485|ref|YP_003902802.1| - 0.086 12.4 0.1 1.1 8.8 0.0 2.4 2 2 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) KASH PF10541.4 gi|307596485|ref|YP_003902802.1| - 5.5 6.9 8.4 24 4.8 0.7 3.0 3 1 1 4 4 4 0 Nuclear envelope localisation domain HemY_N PF07219.8 gi|307596487|ref|YP_003902804.1| - 0.72 9.4 3.4 0.86 9.1 2.4 1.1 1 0 0 1 1 1 0 HemY protein N-terminus Sigma_reg_N PF13800.1 gi|307596487|ref|YP_003902804.1| - 0.84 9.7 6.5 0.89 9.6 4.5 1.1 1 0 0 1 1 1 0 Sigma factor regulator N-terminal Baculo_p74 PF04583.7 gi|307596488|ref|YP_003902805.1| - 0.011 14.9 0.1 0.011 14.9 0.0 1.0 1 0 0 1 1 1 0 Baculoviridae p74 conserved region Helicase_C PF00271.26 gi|307596489|ref|YP_003902806.1| - 1.3e-16 60.1 0.1 3.9e-16 58.6 0.1 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|307596489|ref|YP_003902806.1| - 4.3e-14 52.7 1.2 1.1e-08 35.1 0.3 3.2 2 1 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|307596489|ref|YP_003902806.1| - 2.3e-05 23.9 0.0 0.00013 21.5 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Intein_splicing PF14890.1 gi|307596489|ref|YP_003902806.1| - 0.00029 19.8 1.1 0.00077 18.4 0.3 2.0 2 0 0 2 2 2 1 Intein splicing domain Helicase_C_2 PF13307.1 gi|307596489|ref|YP_003902806.1| - 0.0028 17.6 0.3 0.011 15.6 0.0 2.0 1 1 1 2 2 2 1 Helicase C-terminal domain bact-PGI_C PF10432.4 gi|307596490|ref|YP_003902807.1| - 1e-28 99.9 0.0 1.5e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|307596490|ref|YP_003902807.1| - 2.4e-06 27.1 0.0 7.2e-05 22.4 0.0 2.8 3 0 0 3 3 3 1 SIS domain SIS_2 PF13580.1 gi|307596490|ref|YP_003902807.1| - 0.011 15.4 0.1 0.047 13.4 0.0 2.0 2 0 0 2 2 2 0 SIS domain MFS_1 PF07690.11 gi|307596491|ref|YP_003902808.1| - 3.3e-23 81.9 50.5 1.5e-14 53.4 19.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3185 PF11381.3 gi|307596491|ref|YP_003902808.1| - 0.027 14.2 2.3 0.073 12.8 1.6 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3185) Aminotran_4 PF01063.14 gi|307596492|ref|YP_003902809.1| - 8.5e-46 156.2 0.0 1e-45 156.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Fe_dep_repr_C PF02742.10 gi|307596493|ref|YP_003902810.1| - 1.2e-19 69.7 0.0 3.1e-19 68.4 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain TrmB PF01978.14 gi|307596493|ref|YP_003902810.1| - 2.9e-06 26.8 0.0 6.1e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|307596493|ref|YP_003902810.1| - 0.00029 20.4 0.0 0.00046 19.8 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|307596493|ref|YP_003902810.1| - 0.00049 19.6 0.0 0.00084 18.8 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_45 PF14947.1 gi|307596493|ref|YP_003902810.1| - 0.001 18.8 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|307596493|ref|YP_003902810.1| - 0.0012 18.5 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HemN_C PF06969.11 gi|307596493|ref|YP_003902810.1| - 0.0015 18.5 0.0 0.016 15.2 0.0 2.1 2 0 0 2 2 2 1 HemN C-terminal domain Fe_dep_repress PF01325.14 gi|307596493|ref|YP_003902810.1| - 0.006 16.4 0.0 0.016 15.1 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|307596493|ref|YP_003902810.1| - 0.0078 15.7 0.1 0.027 14.0 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|307596493|ref|YP_003902810.1| - 0.0094 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|307596493|ref|YP_003902810.1| - 0.0098 16.1 0.0 0.018 15.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MotA_activ PF09114.5 gi|307596493|ref|YP_003902810.1| - 0.015 15.0 0.2 0.025 14.3 0.1 1.4 1 0 0 1 1 1 0 Transcription factor MotA, activation domain DUF4423 PF14394.1 gi|307596493|ref|YP_003902810.1| - 0.04 13.4 0.0 0.14 11.6 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) IF2_N PF04760.10 gi|307596493|ref|YP_003902810.1| - 0.043 13.4 0.2 6 6.6 0.0 3.3 2 1 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_24 PF13412.1 gi|307596493|ref|YP_003902810.1| - 0.075 12.4 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RuvB_C PF05491.8 gi|307596493|ref|YP_003902810.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_36 PF13730.1 gi|307596493|ref|YP_003902810.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|307596493|ref|YP_003902810.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Nramp PF01566.13 gi|307596494|ref|YP_003902811.1| - 5.9e-39 133.8 32.4 5.9e-39 133.8 22.4 1.3 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein MFS_1 PF07690.11 gi|307596495|ref|YP_003902812.1| - 2e-23 82.6 45.8 5.3e-16 58.2 12.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|307596495|ref|YP_003902812.1| - 0.037 13.7 1.1 0.037 13.7 0.7 4.0 5 0 0 5 5 5 0 MFS_1 like family Folate_carrier PF01770.13 gi|307596495|ref|YP_003902812.1| - 0.044 12.2 15.0 0.057 11.9 0.5 2.2 2 0 0 2 2 2 0 Reduced folate carrier Peptidase_S8 PF00082.17 gi|307596496|ref|YP_003902813.1| - 2.8e-07 29.9 0.1 5.1e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 Subtilase family Pro-kuma_activ PF09286.6 gi|307596496|ref|YP_003902813.1| - 5e-07 29.8 0.0 9.9e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain MarC PF01914.12 gi|307596497|ref|YP_003902814.1| - 1.1e-31 109.5 21.1 1.3e-31 109.2 14.6 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Antitoxin-MazE PF04014.13 gi|307596498|ref|YP_003902815.1| - 1.8e-08 33.9 0.0 6.7e-05 22.5 0.0 2.4 2 0 0 2 2 2 2 Antidote-toxin recognition MazE zf-RanBP PF00641.13 gi|307596501|ref|YP_003902818.1| - 2.6e-06 26.3 2.6 3.1e-06 26.1 1.8 1.1 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|307596501|ref|YP_003902818.1| - 0.00031 19.8 2.5 0.00044 19.3 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L40e PF01020.12 gi|307596501|ref|YP_003902818.1| - 0.00058 19.3 4.8 0.00062 19.3 3.4 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|307596501|ref|YP_003902818.1| - 0.00096 18.9 1.7 0.0013 18.5 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|307596501|ref|YP_003902818.1| - 0.0064 15.9 3.7 0.0095 15.3 2.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.14 gi|307596501|ref|YP_003902818.1| - 0.025 14.2 0.3 0.028 14.1 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-Sec23_Sec24 PF04810.10 gi|307596501|ref|YP_003902818.1| - 0.32 10.5 5.3 0.41 10.2 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger PHD_2 PF13831.1 gi|307596501|ref|YP_003902818.1| - 0.84 9.0 3.8 4 6.8 0.2 2.1 2 0 0 2 2 2 0 PHD-finger DNA_RNApol_7kD PF03604.8 gi|307596501|ref|YP_003902818.1| - 1.6 8.2 7.2 43 3.6 0.4 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|307596501|ref|YP_003902818.1| - 2.5 7.8 6.6 3.1 7.5 0.2 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Phos_pyr_kin PF08543.7 gi|307596503|ref|YP_003902820.1| - 1.4e-94 315.9 0.0 2e-94 315.4 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|307596503|ref|YP_003902820.1| - 2.5e-66 222.2 0.0 4.4e-66 221.4 0.0 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|307596503|ref|YP_003902820.1| - 3.8e-14 52.5 0.0 5.7e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Tape_meas_lam_C PF09718.5 gi|307596504|ref|YP_003902821.1| - 0.0026 17.6 0.9 0.0042 16.9 0.6 1.3 1 0 0 1 1 1 1 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Zw10 PF06248.8 gi|307596504|ref|YP_003902821.1| - 0.04 12.0 0.1 0.046 11.8 0.0 1.0 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 Rab5ip PF07019.7 gi|307596504|ref|YP_003902821.1| - 0.04 14.0 2.8 0.04 14.0 1.9 2.1 2 1 0 2 2 2 0 Rab5-interacting protein (Rab5ip) bcl-2I13 PF12201.3 gi|307596504|ref|YP_003902821.1| - 0.092 12.2 0.2 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing DUF2946 PF11162.3 gi|307596504|ref|YP_003902821.1| - 0.16 12.2 1.2 7.5 6.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) DUF759 PF05537.6 gi|307596504|ref|YP_003902821.1| - 0.73 8.5 3.1 0.87 8.2 2.1 1.2 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) SRP19 PF01922.12 gi|307596506|ref|YP_003902823.1| - 4.2e-20 72.1 0.0 4.9e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.17 gi|307596507|ref|YP_003902824.1| - 1.3e-31 109.4 0.7 1.5e-31 109.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Pneumo_ncap PF03246.8 gi|307596507|ref|YP_003902824.1| - 0.04 12.4 0.0 0.044 12.3 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein Fer4_8 PF13183.1 gi|307596508|ref|YP_003902825.1| - 1.2e-11 44.4 3.6 1.2e-11 44.4 2.5 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|307596508|ref|YP_003902825.1| - 4.5e-10 39.4 0.2 2e-09 37.3 0.1 2.0 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_17 PF13534.1 gi|307596508|ref|YP_003902825.1| - 1.6e-09 37.9 3.1 1.6e-09 37.9 2.1 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|307596508|ref|YP_003902825.1| - 1.9e-08 34.5 3.5 5.7e-08 33.0 2.4 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|307596508|ref|YP_003902825.1| - 1.4e-06 27.6 9.7 7.2e-05 22.2 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|307596508|ref|YP_003902825.1| - 1.3e-05 25.5 9.1 0.0021 18.4 0.0 3.2 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|307596508|ref|YP_003902825.1| - 1.9e-05 24.8 5.8 0.018 15.3 0.0 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|307596508|ref|YP_003902825.1| - 5.5e-05 22.8 7.0 5.5e-05 22.8 4.9 2.1 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|307596508|ref|YP_003902825.1| - 0.00013 21.6 15.1 0.00018 21.2 1.0 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|307596508|ref|YP_003902825.1| - 0.00022 21.7 0.3 0.075 13.6 0.0 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|307596508|ref|YP_003902825.1| - 0.0027 17.9 17.4 0.024 14.9 0.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|307596508|ref|YP_003902825.1| - 0.0033 17.2 1.6 0.0033 17.2 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|307596508|ref|YP_003902825.1| - 0.022 14.5 10.8 0.061 13.1 0.2 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|307596508|ref|YP_003902825.1| - 0.21 12.3 14.3 0.077 13.7 7.0 2.4 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|307596508|ref|YP_003902825.1| - 0.24 11.8 8.4 0.91 9.9 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain ABM PF03992.11 gi|307596510|ref|YP_003902827.1| - 1.1e-18 67.0 0.0 1.3e-18 66.8 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF4188 PF13826.1 gi|307596510|ref|YP_003902827.1| - 0.013 15.5 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4188) SOR PF07682.6 gi|307596510|ref|YP_003902827.1| - 0.037 12.6 0.1 1.3 7.5 0.0 2.0 1 1 1 2 2 2 0 Sulphur oxygenase reductase Ta0938 PF11494.3 gi|307596511|ref|YP_003902828.1| - 2.8e-14 53.1 1.6 2e-07 31.0 0.1 2.1 1 1 1 2 2 2 2 Ta0938 Zn_ribbon_recom PF13408.1 gi|307596511|ref|YP_003902828.1| - 0.054 13.7 1.5 0.054 13.7 1.0 1.8 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Ribosomal_S8 PF00410.14 gi|307596512|ref|YP_003902829.1| - 3.2e-28 98.1 0.0 4e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L32e PF01655.13 gi|307596513|ref|YP_003902830.1| - 4.9e-34 116.6 1.9 7.1e-34 116.1 1.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Peptidase_S9 PF00326.16 gi|307596514|ref|YP_003902831.1| - 2.3e-56 190.3 0.1 3.4e-56 189.8 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|307596514|ref|YP_003902831.1| - 3.1e-11 43.2 0.0 6.9e-11 42.1 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|307596514|ref|YP_003902831.1| - 2.7e-08 33.5 0.0 0.0042 16.5 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|307596514|ref|YP_003902831.1| - 4.5e-07 28.6 0.0 2.9e-05 22.7 0.0 2.4 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|307596514|ref|YP_003902831.1| - 1.7e-06 28.1 0.0 6.1e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family DPPIV_N PF00930.16 gi|307596514|ref|YP_003902831.1| - 5.6e-05 21.8 0.1 0.00025 19.7 0.0 2.1 2 1 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.13 gi|307596514|ref|YP_003902831.1| - 0.00056 19.2 0.0 0.0024 17.1 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|307596514|ref|YP_003902831.1| - 0.028 14.0 0.0 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 alpha/beta hydrolase fold WD40 PF00400.27 gi|307596514|ref|YP_003902831.1| - 0.037 13.9 0.0 0.16 11.9 0.0 2.1 1 0 0 1 1 1 0 WD domain, G-beta repeat PD40 PF07676.7 gi|307596514|ref|YP_003902831.1| - 0.038 13.6 0.6 2.5 7.8 0.0 3.6 3 0 0 3 3 3 0 WD40-like Beta Propeller Repeat PGAP1 PF07819.8 gi|307596514|ref|YP_003902831.1| - 0.039 13.5 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein DUF2920 PF11144.3 gi|307596514|ref|YP_003902831.1| - 0.056 12.4 0.1 2.9 6.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Abhydrolase_1 PF00561.15 gi|307596514|ref|YP_003902831.1| - 0.077 12.5 0.0 0.39 10.2 0.0 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold FSH1 PF03959.8 gi|307596514|ref|YP_003902831.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DUF3488 PF11992.3 gi|307596515|ref|YP_003902832.1| - 0.061 11.9 5.8 0.078 11.6 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) Phlebovirus_G1 PF07243.6 gi|307596515|ref|YP_003902832.1| - 0.24 9.5 2.8 0.3 9.2 1.9 1.2 1 0 0 1 1 1 0 Phlebovirus glycoprotein G1 Ribosomal_S28e PF01200.13 gi|307596516|ref|YP_003902833.1| - 7.1e-30 102.5 3.7 8.4e-30 102.3 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|307596516|ref|YP_003902833.1| - 0.43 10.3 2.6 0.84 9.4 0.1 2.6 3 0 0 3 3 3 0 KOW motif Ribosomal_L7Ae PF01248.21 gi|307596517|ref|YP_003902834.1| - 8.1e-31 105.3 0.2 1.1e-30 104.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.6 gi|307596517|ref|YP_003902834.1| - 0.002 17.9 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit Pop3 PELOTA_1 PF15608.1 gi|307596517|ref|YP_003902834.1| - 0.0025 17.5 0.1 0.0042 16.8 0.0 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain LpxD PF04613.9 gi|307596517|ref|YP_003902834.1| - 0.087 12.3 0.8 0.2 11.2 0.2 1.9 2 1 0 2 2 2 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Ribosomal_S19 PF00203.16 gi|307596518|ref|YP_003902835.1| - 5.1e-27 93.2 0.2 9.6e-27 92.4 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S19 AMP-binding PF00501.23 gi|307596519|ref|YP_003902836.1| - 7.1e-51 172.9 0.0 9.1e-51 172.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|307596519|ref|YP_003902836.1| - 0.00014 22.7 1.5 0.00098 20.0 0.0 2.8 2 1 0 2 2 2 1 AMP-binding enzyme C-terminal domain AAA_14 PF13173.1 gi|307596521|ref|YP_003902838.1| - 3.7e-32 110.9 0.0 1.1e-31 109.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|307596521|ref|YP_003902838.1| - 1.5e-06 28.2 0.9 5.8e-06 26.3 0.6 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_25 PF13481.1 gi|307596521|ref|YP_003902838.1| - 9.8e-05 21.8 0.0 0.00017 21.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|307596521|ref|YP_003902838.1| - 0.0035 17.0 0.3 2 8.0 0.0 3.0 3 1 1 4 4 4 2 Archaeal ATPase AAA_22 PF13401.1 gi|307596521|ref|YP_003902838.1| - 0.0076 16.3 0.0 0.77 9.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|307596521|ref|YP_003902838.1| - 0.0094 16.1 0.0 0.021 14.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_35 PF14516.1 gi|307596521|ref|YP_003902838.1| - 0.11 11.1 0.0 0.22 10.1 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|307596521|ref|YP_003902838.1| - 0.18 12.0 0.0 3.5 7.9 0.0 2.3 2 0 0 2 2 2 0 ABC transporter 4HBT PF03061.17 gi|307596522|ref|YP_003902839.1| - 5.1e-13 48.9 0.1 8.9e-13 48.1 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|307596522|ref|YP_003902839.1| - 1.5e-06 28.1 0.2 1.9e-06 27.8 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|307596522|ref|YP_003902839.1| - 1e-05 25.4 0.0 1.1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF3806 PF12713.2 gi|307596522|ref|YP_003902839.1| - 0.054 12.9 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3806) Arch_ATPase PF01637.13 gi|307596523|ref|YP_003902840.1| - 8.7e-13 48.5 0.0 3.4e-12 46.5 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|307596523|ref|YP_003902840.1| - 0.013 14.9 0.5 0.083 12.3 0.2 2.1 3 0 0 3 3 3 0 AAA-like domain UPF0079 PF02367.12 gi|307596523|ref|YP_003902840.1| - 0.034 13.7 0.1 0.16 11.5 0.2 1.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|307596523|ref|YP_003902840.1| - 0.038 14.1 0.0 0.13 12.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|307596523|ref|YP_003902840.1| - 0.12 12.7 0.1 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 ABC transporter DUF937 PF06078.6 gi|307596523|ref|YP_003902840.1| - 0.13 12.4 0.0 0.77 9.9 0.0 2.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF937) AAA_16 PF13191.1 gi|307596523|ref|YP_003902840.1| - 0.18 11.8 0.5 4 7.3 0.4 2.2 1 1 0 1 1 1 0 AAA ATPase domain DUF2204 PF09970.4 gi|307596524|ref|YP_003902841.1| - 0.0011 18.5 0.4 0.018 14.5 0.2 2.1 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) DUF1814 PF08843.6 gi|307596524|ref|YP_003902841.1| - 0.07 12.9 1.1 0.18 11.5 0.8 1.6 1 1 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF1814) PhnA_Zn_Ribbon PF08274.7 gi|307596526|ref|YP_003902843.1| - 0.068 12.9 0.1 0.44 10.3 0.1 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Glyco_hydro_38 PF01074.17 gi|307596527|ref|YP_003902844.1| - 2e-65 220.8 0.0 3e-65 220.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.8 gi|307596527|ref|YP_003902844.1| - 4.3e-53 180.7 0.0 6.2e-53 180.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.6 gi|307596527|ref|YP_003902844.1| - 7.4e-12 45.3 0.0 1.2e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Alpha mannosidase, middle domain LSM PF01423.17 gi|307596528|ref|YP_003902845.1| - 2.5e-19 68.6 0.7 2.8e-19 68.4 0.5 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|307596528|ref|YP_003902845.1| - 0.021 14.7 0.1 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Ataxin 2 SM domain UbiA PF01040.13 gi|307596530|ref|YP_003902847.1| - 3.5e-39 134.5 27.6 4.8e-39 134.1 19.1 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Abi PF02517.11 gi|307596531|ref|YP_003902848.1| - 8.4e-11 41.8 2.3 8.4e-11 41.8 1.6 2.2 1 1 1 2 2 2 1 CAAX protease self-immunity DUF4149 PF13664.1 gi|307596531|ref|YP_003902848.1| - 3.8 7.6 11.8 0.052 13.6 1.9 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) ADH_zinc_N PF00107.21 gi|307596532|ref|YP_003902849.1| - 1.5e-23 82.8 0.2 2.2e-23 82.2 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|307596532|ref|YP_003902849.1| - 6.1e-23 80.6 0.0 9.7e-23 80.0 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|307596532|ref|YP_003902849.1| - 8.8e-13 49.2 0.1 1.5e-12 48.4 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase adh_short PF00106.20 gi|307596532|ref|YP_003902849.1| - 0.0021 18.0 0.3 0.0035 17.2 0.2 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Eno-Rase_NADH_b PF12242.3 gi|307596532|ref|YP_003902849.1| - 0.0048 16.6 0.5 0.0096 15.6 0.4 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.1 gi|307596532|ref|YP_003902849.1| - 0.0059 16.6 0.2 0.0079 16.2 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding DUF1469 PF07332.6 gi|307596533|ref|YP_003902850.1| - 0.1 12.3 3.5 0.14 11.8 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1628 PF07790.6 gi|307596534|ref|YP_003902851.1| - 2.3e-05 25.0 3.9 2.3e-05 25.0 2.7 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF1628) Peptidase_M22 PF00814.20 gi|307596535|ref|YP_003902852.1| - 2.2e-72 243.8 0.0 2.5e-72 243.5 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Isochorismatase PF00857.15 gi|307596537|ref|YP_003902854.1| - 1.8e-34 119.1 0.0 2.1e-34 118.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family TPR_2 PF07719.12 gi|307596538|ref|YP_003902855.1| - 2.3e-09 36.4 0.5 8.4e-08 31.5 0.0 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|307596538|ref|YP_003902855.1| - 1.5e-07 30.7 0.0 8.3e-07 28.3 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|307596538|ref|YP_003902855.1| - 6.5e-07 28.9 0.3 1.8e-06 27.5 0.2 1.7 1 0 0 1 1 1 1 TPR repeat TPR_16 PF13432.1 gi|307596538|ref|YP_003902855.1| - 3e-06 27.7 1.1 3e-06 27.7 0.8 2.4 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|307596538|ref|YP_003902855.1| - 4.9e-06 26.7 1.0 1.1e-05 25.6 0.2 1.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|307596538|ref|YP_003902855.1| - 9.1e-06 25.8 7.8 1e-05 25.7 0.1 3.3 3 1 1 4 4 4 1 Tetratricopeptide repeat TPR_9 PF13371.1 gi|307596538|ref|YP_003902855.1| - 0.00011 21.9 0.6 0.0004 20.1 0.2 2.0 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|307596538|ref|YP_003902855.1| - 0.00021 20.8 0.0 0.0023 17.5 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|307596538|ref|YP_003902855.1| - 0.0006 19.6 2.8 0.0051 16.7 0.0 2.8 2 1 1 3 3 3 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|307596538|ref|YP_003902855.1| - 0.0023 17.7 0.0 0.0054 16.5 0.0 1.6 1 0 0 1 1 1 1 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.12 gi|307596538|ref|YP_003902855.1| - 0.0046 17.2 0.6 0.0046 17.2 0.4 1.6 2 0 0 2 2 2 1 Bacterial transcriptional activator domain TPR_4 PF07721.9 gi|307596538|ref|YP_003902855.1| - 0.0077 16.5 0.1 0.0077 16.5 0.1 3.4 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|307596538|ref|YP_003902855.1| - 0.026 14.3 0.1 0.14 12.0 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|307596538|ref|YP_003902855.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.1 gi|307596538|ref|YP_003902855.1| - 0.14 12.4 0.1 32 5.0 0.0 3.3 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|307596538|ref|YP_003902855.1| - 4.9 7.2 6.9 1.8 8.6 0.3 2.7 3 0 0 3 3 3 0 Tetratricopeptide repeat Aminotran_3 PF00202.16 gi|307596539|ref|YP_003902856.1| - 2.4e-58 197.6 0.0 3.1e-58 197.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|307596539|ref|YP_003902856.1| - 0.0036 16.3 0.0 0.12 11.2 0.0 2.3 2 0 0 2 2 2 2 Aminotransferase class I and II DUF2387 PF09526.5 gi|307596540|ref|YP_003902857.1| - 0.15 12.0 0.0 1.5 8.7 0.0 2.1 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) DUF3253 PF11625.3 gi|307596541|ref|YP_003902858.1| - 0.073 12.9 0.0 1.2 9.0 0.0 2.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3253) Prefoldin PF02996.12 gi|307596541|ref|YP_003902858.1| - 0.17 11.5 1.2 5.3 6.7 0.1 2.6 2 1 0 2 2 2 0 Prefoldin subunit adh_short_C2 PF13561.1 gi|307596542|ref|YP_003902859.1| - 1.9e-33 116.2 0.1 2.4e-33 115.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|307596542|ref|YP_003902859.1| - 2.7e-32 111.9 0.2 4.4e-32 111.3 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|307596542|ref|YP_003902859.1| - 1.1e-11 44.7 0.1 1.7e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|307596542|ref|YP_003902859.1| - 2.3e-06 27.2 0.1 4e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|307596542|ref|YP_003902859.1| - 0.00012 20.9 0.1 0.00017 20.3 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family F420_oxidored PF03807.12 gi|307596542|ref|YP_003902859.1| - 0.00015 22.0 1.3 0.011 16.0 0.1 2.9 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|307596542|ref|YP_003902859.1| - 0.0002 21.4 0.1 0.00042 20.3 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|307596542|ref|YP_003902859.1| - 0.0016 18.1 0.1 0.0037 17.0 0.1 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|307596542|ref|YP_003902859.1| - 0.0076 15.5 0.1 0.013 14.7 0.1 1.6 1 1 0 1 1 1 1 NmrA-like family Shikimate_DH PF01488.15 gi|307596542|ref|YP_003902859.1| - 0.063 13.3 0.7 0.75 9.8 0.2 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|307596542|ref|YP_003902859.1| - 0.064 13.2 0.2 0.15 12.0 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain CitMHS PF03600.11 gi|307596543|ref|YP_003902860.1| - 2e-32 112.1 1.3 2.4e-30 105.3 0.0 2.1 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|307596543|ref|YP_003902860.1| - 6e-15 54.5 0.7 7e-11 41.5 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|307596543|ref|YP_003902860.1| - 4.7e-14 52.1 42.7 1.8e-08 33.7 10.1 2.8 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region DUF3834 PF12916.2 gi|307596544|ref|YP_003902861.1| - 4.7e-69 231.4 0.0 5.5e-69 231.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) SBP_bac_3 PF00497.15 gi|307596544|ref|YP_003902861.1| - 0.14 11.4 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 MFS_1 PF07690.11 gi|307596545|ref|YP_003902862.1| - 7.1e-32 110.4 47.7 8.3e-18 64.2 21.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily CbtA PF09490.5 gi|307596545|ref|YP_003902862.1| - 0.0066 15.7 3.6 0.016 14.5 0.6 2.4 2 0 0 2 2 2 1 Probable cobalt transporter subunit (CbtA) DUF3959 PF13105.1 gi|307596545|ref|YP_003902862.1| - 0.69 9.1 7.2 0.89 8.8 0.3 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3959) SfsA PF03749.8 gi|307596546|ref|YP_003902863.1| - 1.4e-55 188.0 0.0 1.8e-55 187.7 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein DUF91 PF01939.11 gi|307596546|ref|YP_003902863.1| - 0.07 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF91 Asparaginase PF00710.15 gi|307596547|ref|YP_003902864.1| - 2.1e-85 286.3 0.0 2.6e-85 286.0 0.0 1.1 1 0 0 1 1 1 1 Asparaginase Molybdopterin PF00384.17 gi|307596549|ref|YP_003902866.1| - 1.1e-70 238.5 0.0 1.4e-70 238.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|307596549|ref|YP_003902866.1| - 1.1e-22 79.9 0.0 2.3e-22 78.8 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|307596549|ref|YP_003902866.1| - 9.5e-16 57.3 0.3 1.9e-15 56.4 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF59 PF01883.14 gi|307596551|ref|YP_003902868.1| - 0.12 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF59 DapB_N PF01113.15 gi|307596552|ref|YP_003902869.1| - 3.3e-08 33.5 0.2 5.3e-08 32.8 0.2 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus CoA_binding PF02629.14 gi|307596552|ref|YP_003902869.1| - 0.00011 22.6 0.3 0.00025 21.4 0.2 1.6 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|307596552|ref|YP_003902869.1| - 0.00041 20.8 0.0 0.00081 19.9 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|307596552|ref|YP_003902869.1| - 0.0056 15.7 0.0 0.0082 15.1 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|307596552|ref|YP_003902869.1| - 0.011 15.3 0.1 0.099 12.2 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|307596552|ref|YP_003902869.1| - 0.15 12.0 0.7 2.3 8.1 0.3 2.2 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Cren7 PF11520.3 gi|307596553|ref|YP_003902870.1| - 2.7e-21 74.9 0.6 2.7e-21 74.9 0.4 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 AA_kinase PF00696.23 gi|307596555|ref|YP_003902872.1| - 6.9e-28 97.8 0.0 9.1e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Hydrolase_6 PF13344.1 gi|307596555|ref|YP_003902872.1| - 0.013 15.3 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HD_3 PF13023.1 gi|307596556|ref|YP_003902873.1| - 2.3e-12 46.9 0.0 4.5e-12 46.0 0.0 1.4 1 1 0 1 1 1 1 HD domain HD_2 PF12917.2 gi|307596556|ref|YP_003902873.1| - 0.0015 18.3 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.17 gi|307596556|ref|YP_003902873.1| - 0.012 15.5 0.1 0.084 12.8 0.1 2.0 1 1 0 1 1 1 0 HD domain RrnaAD PF00398.15 gi|307596557|ref|YP_003902874.1| - 1.1e-45 155.7 0.0 1.4e-45 155.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|307596557|ref|YP_003902874.1| - 2e-12 47.1 0.0 3e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|307596557|ref|YP_003902874.1| - 2.2e-07 30.5 0.0 3.3e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|307596557|ref|YP_003902874.1| - 4.9e-07 30.3 0.0 7.8e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|307596557|ref|YP_003902874.1| - 4.9e-06 26.0 0.0 7.5e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|307596557|ref|YP_003902874.1| - 2.4e-05 23.9 0.0 3.4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|307596557|ref|YP_003902874.1| - 0.00044 20.6 0.0 0.00079 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|307596557|ref|YP_003902874.1| - 0.0031 17.2 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|307596557|ref|YP_003902874.1| - 0.0033 17.7 0.0 0.0059 16.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|307596557|ref|YP_003902874.1| - 0.0039 16.1 0.1 0.0055 15.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF43 MetW PF07021.7 gi|307596557|ref|YP_003902874.1| - 0.0064 15.8 0.1 0.012 14.9 0.1 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|307596557|ref|YP_003902874.1| - 0.025 13.6 0.0 0.036 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|307596557|ref|YP_003902874.1| - 0.044 12.8 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Lactamase_B_2 PF12706.2 gi|307596558|ref|YP_003902875.1| - 3e-25 88.8 0.0 4.4e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|307596558|ref|YP_003902875.1| - 1.7e-16 60.4 0.4 1.9e-13 50.4 0.1 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|307596558|ref|YP_003902875.1| - 0.018 14.4 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease NmrA PF05368.8 gi|307596558|ref|YP_003902875.1| - 0.095 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family HTH_20 PF12840.2 gi|307596560|ref|YP_003902877.1| - 3.9e-09 36.1 0.0 6.4e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|307596560|ref|YP_003902877.1| - 1.8e-08 33.8 0.0 3.8e-08 32.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|307596560|ref|YP_003902877.1| - 2.9e-06 26.7 0.0 4.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|307596560|ref|YP_003902877.1| - 5.1e-05 22.9 0.0 8.8e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|307596560|ref|YP_003902877.1| - 5.1e-05 22.8 0.0 8.4e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|307596560|ref|YP_003902877.1| - 5.9e-05 22.3 0.0 9.9e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|307596560|ref|YP_003902877.1| - 0.00019 20.9 0.0 0.00035 20.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|307596560|ref|YP_003902877.1| - 0.00053 19.5 0.0 0.00099 18.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|307596560|ref|YP_003902877.1| - 0.0011 18.6 0.0 0.0022 17.6 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|307596560|ref|YP_003902877.1| - 0.068 12.9 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|307596560|ref|YP_003902877.1| - 0.075 13.3 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Radical_SAM PF04055.16 gi|307596561|ref|YP_003902878.1| - 2.4e-20 73.3 0.0 6.6e-19 68.6 0.0 2.2 2 0 0 2 2 2 2 Radical SAM superfamily adh_short PF00106.20 gi|307596562|ref|YP_003902879.1| - 6.5e-34 117.2 0.3 9e-34 116.7 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|307596562|ref|YP_003902879.1| - 4.5e-31 108.4 0.2 5.4e-31 108.2 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|307596562|ref|YP_003902879.1| - 4.7e-16 58.9 0.1 6.3e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.5 gi|307596562|ref|YP_003902879.1| - 0.00018 20.7 0.0 0.0038 16.3 0.0 2.0 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.16 gi|307596562|ref|YP_003902879.1| - 0.00073 19.0 0.1 0.0014 18.1 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.12 gi|307596562|ref|YP_003902879.1| - 0.08 13.3 0.3 0.21 12.0 0.2 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TENA_THI-4 PF03070.11 gi|307596563|ref|YP_003902880.1| - 3.5e-52 177.2 0.0 3.9e-52 177.0 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Topoisom_bac PF01131.15 gi|307596564|ref|YP_003902881.1| - 2.7e-101 339.3 0.0 3.3e-101 339.0 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|307596564|ref|YP_003902881.1| - 1.1e-14 54.2 0.0 3.8e-14 52.4 0.0 2.0 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|307596564|ref|YP_003902881.1| - 0.074 13.0 0.0 0.27 11.2 0.0 2.0 1 0 0 1 1 1 0 Toprim domain Sdh_cyt PF01127.17 gi|307596565|ref|YP_003902882.1| - 0.038 13.8 0.2 0.049 13.4 0.2 1.1 1 0 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Claudin_2 PF13903.1 gi|307596565|ref|YP_003902882.1| - 0.076 12.6 0.4 0.098 12.3 0.3 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Pex14_N PF04695.8 gi|307596565|ref|YP_003902882.1| - 0.37 10.8 15.9 0.21 11.6 0.6 3.1 2 1 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF4131 PF13567.1 gi|307596565|ref|YP_003902882.1| - 1 8.7 4.3 0.69 9.3 1.7 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DEAD_2 PF06733.10 gi|307596566|ref|YP_003902883.1| - 4.2e-29 101.1 0.4 6.8e-29 100.4 0.3 1.3 1 0 0 1 1 1 1 DEAD_2 Helicase_C_2 PF13307.1 gi|307596566|ref|YP_003902883.1| - 9e-27 94.0 0.0 1.8e-26 93.0 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain ResIII PF04851.10 gi|307596566|ref|YP_003902883.1| - 4e-09 36.5 0.0 2.3e-06 27.5 0.0 2.5 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|307596566|ref|YP_003902883.1| - 8.3e-07 28.6 0.0 3.7e-05 23.2 0.0 2.9 2 1 0 2 2 2 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|307596566|ref|YP_003902883.1| - 0.00058 19.1 1.1 0.0047 16.1 0.0 2.5 3 0 0 3 3 3 1 PhoH-like protein AAA_22 PF13401.1 gi|307596566|ref|YP_003902883.1| - 0.0015 18.6 0.3 3.1 7.9 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|307596566|ref|YP_003902883.1| - 0.0083 15.5 0.1 0.035 13.5 0.0 2.1 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|307596566|ref|YP_003902883.1| - 0.0083 15.7 0.2 0.038 13.5 0.1 2.0 3 0 0 3 3 3 1 AAA domain Zot PF05707.7 gi|307596566|ref|YP_003902883.1| - 0.0092 15.4 0.0 2.2 7.7 0.0 3.0 3 1 0 3 3 3 1 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|307596566|ref|YP_003902883.1| - 0.019 14.7 0.1 0.044 13.5 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain Herpes_UL42 PF02282.11 gi|307596566|ref|YP_003902883.1| - 0.031 13.8 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase processivity factor (UL42) DUF2972 PF11186.3 gi|307596566|ref|YP_003902883.1| - 0.075 12.9 0.9 0.15 11.9 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2972) Radical_SAM PF04055.16 gi|307596567|ref|YP_003902884.1| - 9.1e-22 77.9 0.0 2.5e-21 76.5 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|307596567|ref|YP_003902884.1| - 4.6e-06 26.5 0.1 2.1e-05 24.4 0.1 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|307596567|ref|YP_003902884.1| - 0.035 14.2 1.2 0.062 13.4 0.1 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain CN_hydrolase PF00795.17 gi|307596568|ref|YP_003902885.1| - 4.1e-10 39.3 0.0 6.6e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Acyl-CoA_dh_1 PF00441.19 gi|307596569|ref|YP_003902886.1| - 2.7e-42 144.3 6.0 4.6e-42 143.6 4.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|307596569|ref|YP_003902886.1| - 2.1e-33 115.2 0.5 1.4e-32 112.5 0.0 2.5 3 1 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|307596569|ref|YP_003902886.1| - 3.8e-21 74.3 0.0 6.2e-21 73.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|307596569|ref|YP_003902886.1| - 1.1e-19 71.0 2.3 1.6e-19 70.4 1.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|307596569|ref|YP_003902886.1| - 0.054 12.8 0.0 0.099 12.0 0.0 1.5 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal VIT1 PF01988.14 gi|307596570|ref|YP_003902887.1| - 6.2e-40 136.9 10.8 9.1e-40 136.4 7.5 1.3 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.12 gi|307596570|ref|YP_003902887.1| - 7.6e-06 26.2 0.4 1.3e-05 25.5 0.3 1.3 1 0 0 1 1 1 1 Rubrerythrin DUF433 PF04255.9 gi|307596570|ref|YP_003902887.1| - 0.032 13.6 0.2 0.071 12.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF433) DUF1947 PF09183.5 gi|307596570|ref|YP_003902887.1| - 0.048 13.4 0.1 0.87 9.3 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) Arch_ATPase PF01637.13 gi|307596573|ref|YP_003902890.1| - 2.6e-32 112.4 0.1 2.6e-32 112.4 0.1 1.5 2 0 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|307596573|ref|YP_003902890.1| - 6.3e-10 39.0 0.5 0.00064 19.6 0.0 3.1 3 1 1 4 4 4 2 AAA domain AAA_22 PF13401.1 gi|307596573|ref|YP_003902890.1| - 4.3e-08 33.3 0.0 1.5e-07 31.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|307596573|ref|YP_003902890.1| - 0.00018 21.5 0.1 0.00048 20.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|307596573|ref|YP_003902890.1| - 0.011 16.5 0.1 0.045 14.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF4423 PF14394.1 gi|307596573|ref|YP_003902890.1| - 0.043 13.3 0.0 0.08 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DegQ PF08181.6 gi|307596573|ref|YP_003902890.1| - 0.046 13.4 1.4 0.13 11.9 0.3 2.3 2 0 0 2 2 2 0 DegQ (SacQ) family AAA PF00004.24 gi|307596573|ref|YP_003902890.1| - 0.081 13.1 0.0 0.3 11.2 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Urocanase PF01175.13 gi|307596574|ref|YP_003902891.1| - 3e-235 781.4 0.0 3.5e-235 781.2 0.0 1.0 1 0 0 1 1 1 1 Urocanase Cons_hypoth698 PF03601.9 gi|307596576|ref|YP_003902893.1| - 2.3e-19 69.1 26.4 2.3e-19 69.1 18.3 2.2 2 0 0 2 2 2 1 Conserved hypothetical protein 698 Peptidase_M48 PF01435.13 gi|307596576|ref|YP_003902893.1| - 0.23 11.0 1.8 0.31 10.5 0.0 1.9 2 0 0 2 2 2 0 Peptidase family M48 Antitoxin-MazE PF04014.13 gi|307596577|ref|YP_003902894.1| - 2.1e-14 52.8 1.4 3.1e-14 52.2 0.9 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE POTRA_2 PF08479.6 gi|307596577|ref|YP_003902894.1| - 0.055 13.1 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 POTRA domain, ShlB-type PIN PF01850.16 gi|307596578|ref|YP_003902895.1| - 8.2e-18 64.8 0.1 9.2e-18 64.7 0.1 1.0 1 0 0 1 1 1 1 PIN domain Arginase PF00491.16 gi|307596579|ref|YP_003902896.1| - 1.2e-60 205.1 0.1 1.4e-60 204.9 0.1 1.0 1 0 0 1 1 1 1 Arginase family Phage_portal PF04860.7 gi|307596581|ref|YP_003902898.1| - 0.096 11.3 0.1 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Phage portal protein Sod_Fe_C PF02777.13 gi|307596582|ref|YP_003902899.1| - 2.6e-33 114.0 0.0 4e-33 113.4 0.0 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|307596582|ref|YP_003902899.1| - 1.1e-28 99.3 1.1 4.6e-28 97.3 0.1 2.2 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Na_Ca_ex PF01699.19 gi|307596583|ref|YP_003902900.1| - 1.1e-14 54.2 39.3 2.9e-10 39.8 10.2 2.3 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Phage_rep_org_N PF09681.5 gi|307596584|ref|YP_003902901.1| - 0.00013 21.5 0.1 0.00019 20.9 0.1 1.3 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) MarR PF01047.17 gi|307596584|ref|YP_003902901.1| - 0.001 18.7 0.1 0.0023 17.6 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|307596584|ref|YP_003902901.1| - 0.0021 17.7 0.4 0.0053 16.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|307596584|ref|YP_003902901.1| - 0.0074 15.9 0.1 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 MarR family Phage_min_cap2 PF06152.6 gi|307596584|ref|YP_003902901.1| - 0.0087 15.0 0.2 0.011 14.7 0.1 1.0 1 0 0 1 1 1 1 Phage minor capsid protein 2 PARP_reg PF02877.9 gi|307596584|ref|YP_003902901.1| - 0.01 15.5 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain Nudix_N PF12535.3 gi|307596584|ref|YP_003902901.1| - 0.028 13.8 0.2 0.16 11.4 0.2 2.1 2 0 0 2 2 2 0 Hydrolase of X-linked nucleoside diphosphate N terminal FumaraseC_C PF10415.4 gi|307596584|ref|YP_003902901.1| - 0.055 13.5 1.6 10 6.2 0.1 2.9 2 1 1 3 3 3 0 Fumarase C C-terminus HTH_42 PF06224.7 gi|307596584|ref|YP_003902901.1| - 0.073 12.3 0.0 0.094 12.0 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|307596584|ref|YP_003902901.1| - 0.077 12.9 0.6 0.18 11.7 0.3 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|307596584|ref|YP_003902901.1| - 0.084 12.5 1.2 0.24 11.0 0.1 2.3 2 1 0 2 2 2 0 HTH domain HTH_20 PF12840.2 gi|307596584|ref|YP_003902901.1| - 0.095 12.5 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|307596584|ref|YP_003902901.1| - 0.31 10.6 1.4 2 7.9 0.3 2.9 2 1 0 2 2 2 0 DeoR-like helix-turn-helix domain Pterin_bind PF00809.17 gi|307596585|ref|YP_003902902.1| - 4.2e-45 153.7 0.9 2.2e-42 144.7 0.1 2.2 2 0 0 2 2 2 2 Pterin binding enzyme BtpA PF03437.10 gi|307596585|ref|YP_003902902.1| - 0.0055 15.9 0.2 0.0055 15.9 0.1 1.8 2 0 0 2 2 2 1 BtpA family ALAD PF00490.16 gi|307596585|ref|YP_003902902.1| - 0.059 12.2 0.0 0.083 11.7 0.0 1.2 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase LysR_substrate PF03466.15 gi|307596585|ref|YP_003902902.1| - 0.085 11.9 0.0 0.17 10.9 0.0 1.5 1 0 0 1 1 1 0 LysR substrate binding domain Rib_5-P_isom_A PF06026.9 gi|307596586|ref|YP_003902903.1| - 2.5e-56 189.7 0.0 3.1e-56 189.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|307596586|ref|YP_003902903.1| - 0.0011 18.6 0.3 0.029 14.0 0.1 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|307596586|ref|YP_003902903.1| - 0.055 12.3 0.0 6.3 5.6 0.0 2.2 2 0 0 2 2 2 0 Putative sugar-binding domain Lyase_aromatic PF00221.14 gi|307596587|ref|YP_003902904.1| - 1.7e-141 471.9 3.0 2.1e-141 471.6 2.1 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase DUF4487 PF14868.1 gi|307596587|ref|YP_003902904.1| - 0.066 11.9 0.2 0.095 11.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4487) AA_permease_2 PF13520.1 gi|307596589|ref|YP_003902906.1| - 5.4e-43 147.1 56.2 5.4e-43 147.1 38.9 2.2 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|307596589|ref|YP_003902906.1| - 2.4e-28 98.7 51.6 2.4e-28 98.7 35.8 2.2 2 0 0 2 2 2 1 Amino acid permease PALP PF00291.20 gi|307596590|ref|YP_003902907.1| - 6.3e-72 242.3 0.0 7.1e-72 242.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|307596590|ref|YP_003902907.1| - 0.1 11.6 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|307596591|ref|YP_003902908.1| - 3.2e-55 187.5 0.0 3.6e-55 187.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|307596591|ref|YP_003902908.1| - 0.00014 21.0 0.0 0.00019 20.5 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|307596591|ref|YP_003902908.1| - 0.0032 15.8 0.0 0.0043 15.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|307596591|ref|YP_003902908.1| - 0.0034 16.1 0.0 0.0054 15.4 0.0 1.3 1 0 0 1 1 1 1 Allinase Aminotran_5 PF00266.14 gi|307596591|ref|YP_003902908.1| - 0.07 11.8 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V UPF0154 PF03672.8 gi|307596591|ref|YP_003902908.1| - 0.1 12.2 0.5 12 5.5 0.0 3.1 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0154) PALP PF00291.20 gi|307596592|ref|YP_003902909.1| - 2.9e-69 233.6 0.0 3.3e-69 233.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.14 gi|307596592|ref|YP_003902909.1| - 0.007 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|307596592|ref|YP_003902909.1| - 0.25 11.0 0.8 0.46 10.1 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2072 PF09845.4 gi|307596592|ref|YP_003902909.1| - 0.33 10.8 0.8 22 4.9 0.1 2.2 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) Zn-ribbon_8 PF09723.5 gi|307596592|ref|YP_003902909.1| - 0.54 10.2 2.7 2 8.4 1.9 1.9 1 1 0 1 1 1 0 Zinc ribbon domain tRNA-synt_1c PF00749.16 gi|307596593|ref|YP_003902910.1| - 2.7e-62 210.2 0.0 3.7e-62 209.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|307596593|ref|YP_003902910.1| - 3.3e-30 105.0 0.0 7.2e-30 103.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Amidohydro_3 PF07969.6 gi|307596594|ref|YP_003902911.1| - 9.8e-21 74.4 0.0 2.3e-16 60.0 0.0 2.6 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|307596594|ref|YP_003902911.1| - 1.1e-19 71.4 0.0 1e-18 68.3 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|307596594|ref|YP_003902911.1| - 3e-17 63.3 0.0 4.1e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|307596594|ref|YP_003902911.1| - 1.9e-09 37.1 0.0 4e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase DUF4287 PF14117.1 gi|307596595|ref|YP_003902912.1| - 0.094 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) GrpE PF01025.14 gi|307596595|ref|YP_003902912.1| - 0.11 12.0 0.0 2.5 7.6 0.0 2.0 2 0 0 2 2 2 0 GrpE Glycos_transf_4 PF00953.16 gi|307596596|ref|YP_003902913.1| - 1.3e-25 90.0 22.5 1.3e-25 90.0 15.6 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 4 Epimerase PF01370.16 gi|307596597|ref|YP_003902914.1| - 4.4e-44 150.6 0.0 5.3e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|307596597|ref|YP_003902914.1| - 8.6e-22 77.3 0.0 1e-21 77.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|307596597|ref|YP_003902914.1| - 2.1e-11 43.2 0.0 5.4e-09 35.3 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.14 gi|307596597|ref|YP_003902914.1| - 4.1e-10 38.8 0.0 9e-10 37.7 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|307596597|ref|YP_003902914.1| - 1.2e-06 28.6 0.0 2.4e-06 27.6 0.0 1.4 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|307596597|ref|YP_003902914.1| - 1.5e-05 24.0 0.0 0.0008 18.3 0.0 2.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|307596597|ref|YP_003902914.1| - 0.038 13.9 0.0 5.7 6.8 0.0 2.4 1 1 1 2 2 2 0 short chain dehydrogenase DUF354 PF04007.7 gi|307596598|ref|YP_003902915.1| - 7.6e-53 179.5 0.0 8.8e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) NOB1_Zn_bind PF08772.6 gi|307596599|ref|YP_003902916.1| - 0.02 14.6 0.1 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2 PF00096.21 gi|307596599|ref|YP_003902916.1| - 0.026 14.8 2.9 0.46 10.9 0.2 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-DNA_Pol PF08996.5 gi|307596599|ref|YP_003902916.1| - 0.036 13.4 0.0 0.036 13.4 0.0 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-C2H2_4 PF13894.1 gi|307596599|ref|YP_003902916.1| - 0.058 13.7 1.0 6 7.4 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|307596599|ref|YP_003902916.1| - 0.11 12.8 1.0 9.2 6.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.7 gi|307596599|ref|YP_003902916.1| - 0.18 11.1 1.1 3 7.2 0.2 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|307596599|ref|YP_003902916.1| - 0.23 11.7 2.6 1.2 9.5 0.0 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|307596599|ref|YP_003902916.1| - 0.23 11.1 5.3 0.27 10.9 0.6 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.1 gi|307596599|ref|YP_003902916.1| - 0.42 10.5 2.7 2.5 8.0 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.1 gi|307596599|ref|YP_003902916.1| - 0.45 10.2 2.4 1.7 8.3 0.3 2.1 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_5 PF13719.1 gi|307596599|ref|YP_003902916.1| - 0.5 10.0 2.5 1.3 8.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|307596599|ref|YP_003902916.1| - 0.75 9.9 3.6 13 6.0 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin PF00301.15 gi|307596599|ref|YP_003902916.1| - 1.1 9.1 4.8 15 5.5 3.3 2.0 1 1 0 1 1 1 0 Rubredoxin TFIIS_C PF01096.13 gi|307596599|ref|YP_003902916.1| - 1.3 8.6 4.9 7.6 6.2 0.1 2.5 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-H2C2_5 PF13909.1 gi|307596599|ref|YP_003902916.1| - 1.4 9.2 4.5 6.8 7.1 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc-finger domain Lactamase_B_2 PF12706.2 gi|307596601|ref|YP_003902918.1| - 0.00019 21.0 0.0 0.00024 20.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|307596601|ref|YP_003902918.1| - 0.00044 19.9 0.0 0.00094 18.8 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|307596601|ref|YP_003902918.1| - 0.013 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Ribosomal_L37e PF01907.14 gi|307596602|ref|YP_003902919.1| - 2.2e-24 84.9 9.4 2.5e-24 84.8 6.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e IGFL PF14653.1 gi|307596602|ref|YP_003902919.1| - 0.004 17.1 2.1 0.005 16.8 1.5 1.3 1 1 0 1 1 1 1 Insulin growth factor-like family DZR PF12773.2 gi|307596602|ref|YP_003902919.1| - 0.0058 16.4 1.2 0.0075 16.0 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon Cys_rich_CPCC PF14206.1 gi|307596602|ref|YP_003902919.1| - 0.063 12.8 0.4 0.074 12.6 0.3 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC Mu-like_Com PF10122.4 gi|307596602|ref|YP_003902919.1| - 0.08 12.0 2.5 0.12 11.4 1.7 1.5 1 1 0 1 1 1 0 Mu-like prophage protein Com Zn-ribbon_8 PF09723.5 gi|307596602|ref|YP_003902919.1| - 0.13 12.2 0.3 1.2 9.1 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF2752 PF10825.3 gi|307596602|ref|YP_003902919.1| - 0.23 11.5 2.4 13 5.8 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) OrfB_Zn_ribbon PF07282.6 gi|307596602|ref|YP_003902919.1| - 0.3 10.7 1.8 0.5 10.0 1.0 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|307596602|ref|YP_003902919.1| - 0.48 9.7 6.1 3.9 6.7 4.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|307596602|ref|YP_003902919.1| - 1.4 8.5 6.9 1.4 8.5 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|307596602|ref|YP_003902919.1| - 3.1 7.6 8.8 30 4.5 6.1 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|307596602|ref|YP_003902919.1| - 4.4 6.9 6.6 21 4.7 4.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain CoA_transf_3 PF02515.12 gi|307596603|ref|YP_003902920.1| - 1.9e-58 196.8 0.0 2.7e-58 196.3 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III 4HBT PF03061.17 gi|307596604|ref|YP_003902921.1| - 1.6e-06 28.1 0.0 2.1e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|307596604|ref|YP_003902921.1| - 3.8e-06 27.3 0.0 4.8e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily NTP_transf_2 PF01909.18 gi|307596605|ref|YP_003902922.1| - 0.091 13.1 0.0 0.15 12.4 0.0 1.6 1 1 0 1 1 1 0 Nucleotidyltransferase domain ACT PF01842.20 gi|307596606|ref|YP_003902923.1| - 3.3e-06 26.4 0.8 7.9e-06 25.2 0.2 1.9 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|307596606|ref|YP_003902923.1| - 7.3e-06 26.2 2.8 0.0017 18.6 0.1 2.5 1 1 1 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|307596606|ref|YP_003902923.1| - 0.075 12.7 0.1 0.38 10.5 0.0 2.1 1 1 1 2 2 2 0 ACT domain Ribosomal_L14e PF01929.12 gi|307596607|ref|YP_003902924.1| - 2.8e-06 27.5 0.1 4.5e-06 26.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.24 gi|307596607|ref|YP_003902924.1| - 0.00013 21.5 2.4 0.00025 20.6 1.7 1.5 1 0 0 1 1 1 1 KOW motif MR_MLE_C PF13378.1 gi|307596608|ref|YP_003902925.1| - 6.2e-28 97.0 0.0 3.2e-27 94.6 0.0 2.1 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|307596608|ref|YP_003902925.1| - 5e-18 65.3 0.0 1.8e-17 63.6 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|307596608|ref|YP_003902925.1| - 1.7e-12 47.3 0.0 3.4e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF4015 PF13200.1 gi|307596608|ref|YP_003902925.1| - 0.00076 18.4 0.1 0.0011 17.9 0.1 1.2 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain DeoC PF01791.4 gi|307596609|ref|YP_003902926.1| - 6.1e-30 104.2 0.0 6.8e-30 104.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase HpcH_HpaI PF03328.9 gi|307596609|ref|YP_003902926.1| - 0.036 12.9 0.0 0.66 8.8 0.0 2.2 2 0 0 2 2 2 0 HpcH/HpaI aldolase/citrate lyase family Phage_gp49_66 PF13876.1 gi|307596609|ref|YP_003902926.1| - 0.075 13.1 0.0 0.48 10.5 0.0 2.1 1 1 1 2 2 2 0 Phage protein (N4 Gp49/phage Sf6 gene 66) family DUF837 PF05769.6 gi|307596609|ref|YP_003902926.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF837) Ribosomal_S11 PF00411.14 gi|307596610|ref|YP_003902927.1| - 5.1e-40 136.0 0.2 7.2e-40 135.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Acetyltransf_1 PF00583.19 gi|307596611|ref|YP_003902928.1| - 9.9e-10 38.3 0.0 2.3e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|307596611|ref|YP_003902928.1| - 1.5e-05 25.0 0.0 2.3e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|307596611|ref|YP_003902928.1| - 4.8e-05 23.0 0.0 8.5e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|307596611|ref|YP_003902928.1| - 0.00015 21.8 0.0 0.00028 20.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|307596611|ref|YP_003902928.1| - 0.023 14.5 0.1 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Rad51 PF08423.6 gi|307596612|ref|YP_003902929.1| - 9.8e-98 326.1 0.0 1.2e-97 325.8 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|307596612|ref|YP_003902929.1| - 3e-14 52.8 0.0 5.5e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|307596612|ref|YP_003902929.1| - 2.9e-11 43.0 0.1 6e-11 41.9 0.1 1.5 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|307596612|ref|YP_003902929.1| - 6.9e-11 41.7 0.1 1.7e-10 40.4 0.1 1.7 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|307596612|ref|YP_003902929.1| - 2.8e-09 37.0 3.3 4.7e-09 36.2 0.4 2.4 2 1 0 2 2 2 1 Helix-hairpin-helix domain AAA_22 PF13401.1 gi|307596612|ref|YP_003902929.1| - 0.0064 16.6 0.1 0.014 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|307596612|ref|YP_003902929.1| - 0.0071 16.6 0.1 0.023 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain DNA_pol_lambd_f PF10391.4 gi|307596612|ref|YP_003902929.1| - 0.0076 15.7 0.4 0.053 13.0 0.0 2.5 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|307596612|ref|YP_003902929.1| - 0.031 13.9 0.2 0.35 10.6 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif SRP54 PF00448.17 gi|307596612|ref|YP_003902929.1| - 0.033 13.6 0.0 0.058 12.8 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|307596612|ref|YP_003902929.1| - 0.036 13.7 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|307596612|ref|YP_003902929.1| - 0.043 14.1 0.0 0.097 12.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter HhH-GPD PF00730.20 gi|307596612|ref|YP_003902929.1| - 0.057 13.7 0.0 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein BAF PF02961.9 gi|307596612|ref|YP_003902929.1| - 0.063 13.5 0.0 0.17 12.2 0.0 1.7 1 0 0 1 1 1 0 Barrier to autointegration factor PAXNEB PF05625.6 gi|307596612|ref|YP_003902929.1| - 0.065 12.0 1.9 0.11 11.2 0.2 1.9 1 1 1 2 2 2 0 PAXNEB protein Asp_protease_2 PF13650.1 gi|307596613|ref|YP_003902930.1| - 6.5e-06 26.5 0.1 9.3e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease DUF131 PF01998.12 gi|307596613|ref|YP_003902930.1| - 0.032 13.5 0.0 0.06 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF131 RVP PF00077.15 gi|307596613|ref|YP_003902930.1| - 0.04 13.8 0.0 0.051 13.4 0.0 1.2 1 0 0 1 1 1 0 Retroviral aspartyl protease UPF0180 PF03698.8 gi|307596614|ref|YP_003902931.1| - 0.00036 20.3 0.2 0.00067 19.4 0.2 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0180) Arch_ATPase PF01637.13 gi|307596616|ref|YP_003902933.1| - 8e-33 114.0 0.1 1.1e-32 113.6 0.1 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|307596616|ref|YP_003902933.1| - 6.8e-10 38.9 0.3 1.7e-07 31.2 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|307596616|ref|YP_003902933.1| - 2.5e-08 34.1 0.0 3.2e-07 30.5 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|307596616|ref|YP_003902933.1| - 7.1e-06 26.1 0.0 2e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|307596616|ref|YP_003902933.1| - 0.0073 16.5 0.0 0.06 13.5 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TrmB PF01978.14 gi|307596616|ref|YP_003902933.1| - 0.008 15.8 0.0 0.022 14.4 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA_35 PF14516.1 gi|307596616|ref|YP_003902933.1| - 0.0099 14.5 0.0 0.023 13.3 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain Surf_Ag_VNR PF07244.10 gi|307596616|ref|YP_003902933.1| - 0.019 15.3 0.1 0.13 12.7 0.0 2.3 2 0 0 2 2 2 0 Surface antigen variable number repeat DMRL_synthase PF00885.14 gi|307596617|ref|YP_003902934.1| - 4.5e-40 136.6 1.2 5e-40 136.4 0.8 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase NTPase_I-T PF01931.13 gi|307596618|ref|YP_003902935.1| - 4.2e-37 127.4 0.0 4.9e-37 127.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Hemopexin PF00045.14 gi|307596619|ref|YP_003902936.1| - 0.051 13.3 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Hemopexin SWIM PF04434.12 gi|307596621|ref|YP_003902938.1| - 0.094 12.2 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 SWIM zinc finger DUF973 PF06157.6 gi|307596622|ref|YP_003902939.1| - 0.098 11.6 17.1 0.0065 15.4 4.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF973) DHDPS PF00701.17 gi|307596623|ref|YP_003902940.1| - 1.8e-40 138.3 0.0 2e-40 138.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AFOR_N PF02730.10 gi|307596624|ref|YP_003902941.1| - 4.2e-30 104.6 0.0 6e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|307596624|ref|YP_003902941.1| - 8.9e-14 50.9 0.0 4.8e-12 45.2 0.0 2.2 2 0 0 2 2 2 2 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CBS PF00571.23 gi|307596625|ref|YP_003902942.1| - 8.6e-29 99.0 4.5 1.7e-15 56.5 0.3 2.0 2 0 0 2 2 2 2 CBS domain RNA_pol_Rpc82 PF05645.8 gi|307596625|ref|YP_003902942.1| - 0.073 12.6 0.0 4 6.8 0.0 2.0 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 DUF1495 PF07381.6 gi|307596626|ref|YP_003902943.1| - 0.00046 19.7 0.0 0.00051 19.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) EAP30 PF04157.11 gi|307596626|ref|YP_003902943.1| - 0.0037 16.4 0.0 0.0042 16.2 0.0 1.0 1 0 0 1 1 1 1 EAP30/Vps36 family Arg_repressor PF01316.16 gi|307596626|ref|YP_003902943.1| - 0.0053 16.2 0.1 0.0062 16.0 0.1 1.1 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain z-alpha PF02295.12 gi|307596626|ref|YP_003902943.1| - 0.0066 16.1 0.2 0.0085 15.8 0.1 1.1 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain Trans_reg_C PF00486.23 gi|307596626|ref|YP_003902943.1| - 0.0095 15.8 0.0 0.011 15.6 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal Lipoprotein_Ltp PF07553.6 gi|307596626|ref|YP_003902943.1| - 0.011 15.6 0.1 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein LexA_DNA_bind PF01726.11 gi|307596626|ref|YP_003902943.1| - 0.021 14.3 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain RuvB_C PF05491.8 gi|307596626|ref|YP_003902943.1| - 0.024 14.2 0.1 0.027 14.0 0.0 1.0 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_20 PF12840.2 gi|307596626|ref|YP_003902943.1| - 0.029 14.1 0.0 0.032 14.0 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain DsrD PF08679.6 gi|307596626|ref|YP_003902943.1| - 0.039 13.9 0.3 0.049 13.6 0.2 1.1 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) TrmB PF01978.14 gi|307596626|ref|YP_003902943.1| - 0.048 13.3 0.2 0.057 13.1 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|307596626|ref|YP_003902943.1| - 0.071 12.5 0.2 0.25 10.7 0.1 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|307596626|ref|YP_003902943.1| - 0.099 12.3 0.0 0.16 11.6 0.0 1.3 1 1 0 1 1 1 0 MarR family FaeA PF04703.7 gi|307596626|ref|YP_003902943.1| - 0.1 12.7 0.1 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein RNA_pol_Rpc34 PF05158.7 gi|307596626|ref|YP_003902943.1| - 0.11 11.6 0.0 0.12 11.5 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_11 PF08279.7 gi|307596626|ref|YP_003902943.1| - 0.12 12.0 0.0 0.14 11.7 0.0 1.4 1 1 0 1 1 1 0 HTH domain Lactamase_B_2 PF12706.2 gi|307596627|ref|YP_003902944.1| - 2e-09 37.2 0.0 4.2e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|307596627|ref|YP_003902944.1| - 2.9e-06 27.0 0.0 5.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|307596627|ref|YP_003902944.1| - 2e-05 24.3 0.8 0.017 14.7 0.1 2.5 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily SAM_adeno_trans PF01887.11 gi|307596628|ref|YP_003902945.1| - 3.5e-93 311.3 0.0 4e-93 311.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DUF2187 PF09953.4 gi|307596628|ref|YP_003902945.1| - 0.048 13.3 0.0 0.47 10.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2187) DNA_binding_1 PF01035.15 gi|307596629|ref|YP_003902946.1| - 4.7e-24 83.9 0.0 7.1e-24 83.3 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Phage_Cox PF10743.4 gi|307596629|ref|YP_003902946.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Regulatory phage protein cox ThiS PF02597.15 gi|307596630|ref|YP_003902947.1| - 1.6e-11 44.4 0.1 1.8e-11 44.3 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|307596630|ref|YP_003902947.1| - 2.3e-08 34.0 0.1 2.5e-08 33.9 0.1 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) LacI PF00356.16 gi|307596630|ref|YP_003902947.1| - 0.053 13.1 0.1 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family TGS PF02824.16 gi|307596630|ref|YP_003902947.1| - 0.11 12.3 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 TGS domain DUF187 PF02638.10 gi|307596631|ref|YP_003902948.1| - 0.078 11.8 0.0 0.087 11.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase like GH101 QRPTase_C PF01729.14 gi|307596632|ref|YP_003902949.1| - 4.8e-17 61.9 0.0 6.6e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|307596632|ref|YP_003902949.1| - 3.2e-07 30.0 0.0 6e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain THUMP PF02926.12 gi|307596634|ref|YP_003902951.1| - 6.6e-16 58.4 0.5 8.5e-16 58.1 0.3 1.2 1 0 0 1 1 1 1 THUMP domain NAD_binding_2 PF03446.10 gi|307596635|ref|YP_003902952.1| - 1.4e-21 77.0 0.1 3.4e-21 75.7 0.1 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|307596635|ref|YP_003902952.1| - 6.2e-14 52.0 0.0 1e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|307596635|ref|YP_003902952.1| - 1.7e-06 28.3 0.4 3.9e-06 27.2 0.0 1.8 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|307596635|ref|YP_003902952.1| - 1e-05 25.6 0.0 2.5e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|307596635|ref|YP_003902952.1| - 5.4e-05 22.9 0.0 8.4e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|307596635|ref|YP_003902952.1| - 6.2e-05 22.2 0.0 0.0001 21.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|307596635|ref|YP_003902952.1| - 0.00017 21.3 0.0 0.00034 20.3 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|307596635|ref|YP_003902952.1| - 0.00028 20.3 0.0 0.00046 19.6 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|307596635|ref|YP_003902952.1| - 0.00029 20.8 0.1 0.00053 20.0 0.1 1.5 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|307596635|ref|YP_003902952.1| - 0.0029 16.9 0.1 0.0047 16.1 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|307596635|ref|YP_003902952.1| - 0.0037 16.2 0.1 0.0056 15.7 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase XdhC_C PF13478.1 gi|307596635|ref|YP_003902952.1| - 0.017 15.4 0.0 0.4 10.9 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain TrkA_N PF02254.13 gi|307596635|ref|YP_003902952.1| - 0.02 14.8 0.0 0.052 13.5 0.0 1.7 1 1 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|307596635|ref|YP_003902952.1| - 0.022 14.1 0.0 0.17 11.2 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.15 gi|307596635|ref|YP_003902952.1| - 0.039 13.8 0.1 0.068 13.0 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Rossmann-like PF10727.4 gi|307596635|ref|YP_003902952.1| - 0.041 13.6 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain Epimerase PF01370.16 gi|307596635|ref|YP_003902952.1| - 0.062 12.7 0.0 0.087 12.2 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|307596635|ref|YP_003902952.1| - 0.071 13.0 0.1 0.76 9.6 0.0 2.1 2 0 0 2 2 2 0 short chain dehydrogenase Ribosomal_L31e PF01198.14 gi|307596636|ref|YP_003902953.1| - 3.7e-28 97.0 3.7 3.7e-28 97.0 2.6 1.3 1 1 1 2 2 2 1 Ribosomal protein L31e AAA PF00004.24 gi|307596637|ref|YP_003902954.1| - 1e-82 274.8 0.0 1.5e-41 141.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|307596637|ref|YP_003902954.1| - 1.1e-12 48.2 0.5 0.015 15.4 0.0 4.4 2 2 2 4 4 4 3 AAA domain AAA_17 PF13207.1 gi|307596637|ref|YP_003902954.1| - 1.5e-12 48.4 0.0 2.7e-05 24.9 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|307596637|ref|YP_003902954.1| - 1.8e-12 47.4 0.0 1.6e-05 24.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|307596637|ref|YP_003902954.1| - 1.1e-11 44.2 0.0 1.2e-05 24.4 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|307596637|ref|YP_003902954.1| - 2.2e-11 43.6 4.0 2.3e-05 24.1 0.2 4.5 3 2 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|307596637|ref|YP_003902954.1| - 8.7e-10 38.5 0.0 0.00087 19.1 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.1 gi|307596637|ref|YP_003902954.1| - 8.8e-10 38.9 0.0 0.0014 18.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|307596637|ref|YP_003902954.1| - 4.3e-09 36.0 0.0 0.0002 20.8 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|307596637|ref|YP_003902954.1| - 5e-09 35.6 1.3 0.0014 17.8 0.2 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|307596637|ref|YP_003902954.1| - 9.9e-08 32.1 0.2 0.074 13.0 0.0 4.0 4 1 1 5 5 4 2 AAA ATPase domain AAA_33 PF13671.1 gi|307596637|ref|YP_003902954.1| - 2.4e-07 30.6 0.0 0.0015 18.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|307596637|ref|YP_003902954.1| - 9.1e-06 25.3 0.9 0.23 11.2 0.1 3.0 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|307596637|ref|YP_003902954.1| - 1e-05 24.7 0.0 0.083 11.9 0.0 2.5 3 0 0 3 3 2 2 Zeta toxin Vps4_C PF09336.5 gi|307596637|ref|YP_003902954.1| - 1.1e-05 25.2 0.0 0.007 16.2 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain RNA_helicase PF00910.17 gi|307596637|ref|YP_003902954.1| - 2.7e-05 24.2 0.0 0.29 11.3 0.0 2.7 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.7 gi|307596637|ref|YP_003902954.1| - 3.2e-05 23.6 0.1 0.18 11.4 0.0 3.8 3 1 1 4 4 4 1 NACHT domain AAA_24 PF13479.1 gi|307596637|ref|YP_003902954.1| - 3.6e-05 23.4 0.0 0.35 10.3 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.1 gi|307596637|ref|YP_003902954.1| - 6.4e-05 22.9 0.0 0.048 13.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|307596637|ref|YP_003902954.1| - 8e-05 22.1 6.2 0.11 11.9 0.1 4.0 2 2 1 4 4 4 2 AAA domain Arch_ATPase PF01637.13 gi|307596637|ref|YP_003902954.1| - 0.0001 22.1 0.0 6.7 6.3 0.0 3.6 2 1 1 3 3 3 0 Archaeal ATPase TIP49 PF06068.8 gi|307596637|ref|YP_003902954.1| - 0.00014 20.7 0.1 0.21 10.2 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_3 PF07726.6 gi|307596637|ref|YP_003902954.1| - 0.00015 21.3 0.1 0.47 10.0 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|307596637|ref|YP_003902954.1| - 0.00031 20.2 0.0 0.67 9.4 0.0 2.7 3 0 0 3 3 2 2 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|307596637|ref|YP_003902954.1| - 0.00035 20.3 0.7 0.39 10.4 0.0 3.6 3 1 1 4 4 4 1 NTPase SKI PF01202.17 gi|307596637|ref|YP_003902954.1| - 0.00041 20.2 0.0 0.23 11.2 0.0 2.3 2 0 0 2 2 2 1 Shikimate kinase ABC_tran PF00005.22 gi|307596637|ref|YP_003902954.1| - 0.00047 20.4 0.0 0.28 11.4 0.0 2.4 2 0 0 2 2 2 1 ABC transporter DUF815 PF05673.8 gi|307596637|ref|YP_003902954.1| - 0.0023 16.9 0.0 1.1 8.1 0.0 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF815) UPF0079 PF02367.12 gi|307596637|ref|YP_003902954.1| - 0.013 15.0 0.2 0.71 9.5 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 KTI12 PF08433.5 gi|307596637|ref|YP_003902954.1| - 0.015 14.4 0.0 4.8 6.3 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_10 PF12846.2 gi|307596637|ref|YP_003902954.1| - 0.022 14.2 0.3 1.8 7.8 0.0 2.7 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|307596637|ref|YP_003902954.1| - 0.027 13.3 0.0 4 6.2 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain MCM PF00493.18 gi|307596637|ref|YP_003902954.1| - 0.028 13.2 0.1 3.3 6.4 0.0 2.6 3 0 0 3 3 3 0 MCM2/3/5 family AFG1_ATPase PF03969.11 gi|307596637|ref|YP_003902954.1| - 0.034 12.9 0.0 5.2 5.7 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase KaiC PF06745.8 gi|307596637|ref|YP_003902954.1| - 0.041 12.9 0.5 13 4.8 0.0 3.1 3 0 0 3 3 3 0 KaiC PhoH PF02562.11 gi|307596637|ref|YP_003902954.1| - 0.053 12.7 0.2 11 5.2 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|307596637|ref|YP_003902954.1| - 0.073 13.1 0.0 11 6.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|307596637|ref|YP_003902954.1| - 0.096 12.2 0.0 13 5.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|307596637|ref|YP_003902954.1| - 0.18 10.6 0.2 3 6.6 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_30 PF13604.1 gi|307596637|ref|YP_003902954.1| - 0.23 11.0 0.1 5.7 6.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain Rep_fac_C PF08542.6 gi|307596638|ref|YP_003902955.1| - 0.04 13.9 0.1 0.11 12.4 0.1 1.7 1 0 0 1 1 1 0 Replication factor C C-terminal domain Elf1 PF05129.8 gi|307596639|ref|YP_003902956.1| - 0.063 12.9 0.3 9.3 6.0 0.0 2.3 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like DMRL_synthase PF00885.14 gi|307596640|ref|YP_003902957.1| - 4.9e-14 52.2 0.0 5.9e-14 51.9 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Glyco_hydro_57 PF03065.10 gi|307596642|ref|YP_003902959.1| - 2.1e-54 184.8 0.0 8.2e-54 182.8 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57