# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- THUMP PF02926.17 gi|307594150|ref|YP_003900467.1| - 4e-05 23.8 0.0 4.7e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 THUMP domain Cdc6_C PF09079.11 gi|307594151|ref|YP_003900468.1| - 1.1e-19 70.2 0.0 2.4e-19 69.1 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|307594151|ref|YP_003900468.1| - 1e-09 38.8 0.0 7.4e-09 36.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|307594151|ref|YP_003900468.1| - 5.1e-06 27.0 0.1 4.8e-05 23.8 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.22 gi|307594151|ref|YP_003900468.1| - 0.0028 16.9 0.0 0.0066 15.7 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain IstB_IS21 PF01695.17 gi|307594151|ref|YP_003900468.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|307594151|ref|YP_003900468.1| - 0.025 14.4 0.0 0.25 11.1 0.0 2.4 3 0 0 3 3 3 0 Bacterial dnaA protein 6PF2K PF01591.18 gi|307594151|ref|YP_003900468.1| - 0.049 12.9 0.0 0.1 11.9 0.0 1.5 1 1 0 1 1 1 0 6-phosphofructo-2-kinase AAA PF00004.29 gi|307594151|ref|YP_003900468.1| - 0.062 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PadR PF03551.14 gi|307594151|ref|YP_003900468.1| - 0.077 13.0 0.2 1.9 8.5 0.1 2.4 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family AAA_24 PF13479.6 gi|307594151|ref|YP_003900468.1| - 0.078 12.7 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|307594151|ref|YP_003900468.1| - 0.14 12.5 0.0 0.25 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain HTH_5 PF01022.20 gi|307594152|ref|YP_003900469.1| - 1.8e-05 24.5 0.2 3.5e-05 23.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|307594152|ref|YP_003900469.1| - 0.00027 20.9 0.0 0.00048 20.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2551 PF10826.8 gi|307594152|ref|YP_003900469.1| - 0.0024 18.0 0.2 0.003 17.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) TrmB PF01978.19 gi|307594152|ref|YP_003900469.1| - 0.0031 17.4 0.3 0.0038 17.1 0.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|307594152|ref|YP_003900469.1| - 0.0059 16.1 0.2 0.0092 15.5 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Mga PF05043.13 gi|307594152|ref|YP_003900469.1| - 0.0063 17.1 0.5 0.01 16.4 0.1 1.5 2 0 0 2 2 2 1 Mga helix-turn-helix domain HTH_11 PF08279.12 gi|307594152|ref|YP_003900469.1| - 0.022 14.7 0.4 0.031 14.2 0.4 1.3 1 0 0 1 1 1 0 HTH domain MarR_2 PF12802.7 gi|307594152|ref|YP_003900469.1| - 0.045 13.6 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|307594152|ref|YP_003900469.1| - 0.093 13.1 0.1 0.14 12.5 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator HpcH_HpaI PF03328.14 gi|307594153|ref|YP_003900470.1| - 1.2e-35 122.7 0.1 4.3e-34 117.6 0.1 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|307594153|ref|YP_003900470.1| - 3.4e-15 56.0 0.0 1.5e-09 37.5 0.0 2.1 1 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold BH4 PF02180.17 gi|307594153|ref|YP_003900470.1| - 0.057 13.3 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 Bcl-2 homology region 4 ADH_N PF08240.12 gi|307594154|ref|YP_003900471.1| - 8.7e-22 77.1 0.1 8.3e-21 73.9 0.1 2.2 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|307594154|ref|YP_003900471.1| - 1.9e-17 63.5 0.0 2.9e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|307594154|ref|YP_003900471.1| - 8.5e-12 46.3 0.6 1.3e-11 45.6 0.6 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Epimerase PF01370.21 gi|307594154|ref|YP_003900471.1| - 0.027 13.9 0.1 0.041 13.3 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|307594154|ref|YP_003900471.1| - 0.094 12.6 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 KR domain adh_short PF00106.25 gi|307594154|ref|YP_003900471.1| - 0.15 11.5 0.1 0.21 11.0 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Glycos_transf_2 PF00535.26 gi|307594155|ref|YP_003900472.1| - 1.1e-24 87.1 0.0 1.5e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|307594155|ref|YP_003900472.1| - 2.2e-06 27.7 0.0 3.3e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|307594155|ref|YP_003900472.1| - 0.13 12.8 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 UPF0020 PF01170.18 gi|307594156|ref|YP_003900473.1| - 1.1e-28 100.3 0.0 2.2e-28 99.3 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|307594156|ref|YP_003900473.1| - 4.2e-08 32.9 0.0 6.1e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain THUMP PF02926.17 gi|307594156|ref|YP_003900473.1| - 0.0059 16.7 0.0 0.012 15.7 0.0 1.6 1 1 0 1 1 1 1 THUMP domain Methyltransf_25 PF13649.6 gi|307594156|ref|YP_003900473.1| - 0.0069 17.1 0.0 0.017 15.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|307594156|ref|YP_003900473.1| - 0.031 14.2 0.0 2.3 8.1 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307594156|ref|YP_003900473.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|307594156|ref|YP_003900473.1| - 0.16 11.6 0.0 0.36 10.5 0.0 1.6 2 0 0 2 2 2 0 DNA methylase DUF2192 PF09958.9 gi|307594157|ref|YP_003900474.1| - 2.4e-81 272.6 3.2 2.7e-81 272.5 3.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Ribosomal_L16 PF00252.18 gi|307594158|ref|YP_003900475.1| - 1.5e-33 115.6 0.1 1.8e-33 115.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e HTH_45 PF14947.6 gi|307594159|ref|YP_003900476.1| - 1.1e-08 34.9 0.0 1.3e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|307594159|ref|YP_003900476.1| - 0.00038 20.3 0.0 0.00057 19.7 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|307594159|ref|YP_003900476.1| - 0.0011 18.7 0.1 0.04 13.7 0.0 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|307594159|ref|YP_003900476.1| - 0.0019 17.7 0.0 0.0039 16.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF977 PF06163.11 gi|307594159|ref|YP_003900476.1| - 0.072 13.0 0.1 0.081 12.9 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF2207 PF09972.9 gi|307594160|ref|YP_003900477.1| - 0.81 8.4 11.9 0.61 8.8 1.3 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF2070 PF09843.9 gi|307594160|ref|YP_003900477.1| - 1.1 7.4 11.5 0.37 9.0 8.8 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) NAC PF01849.18 gi|307594162|ref|YP_003900479.1| - 7.5e-08 32.2 0.1 2.1e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 NAC domain UBA_4 PF14555.6 gi|307594162|ref|YP_003900479.1| - 0.00018 21.2 0.0 0.002 17.9 0.0 2.2 2 0 0 2 2 2 1 UBA-like domain HOIP-UBA PF16678.5 gi|307594162|ref|YP_003900479.1| - 0.031 14.3 0.1 0.045 13.8 0.1 1.4 1 0 0 1 1 1 0 HOIP UBA domain pair UBA PF00627.31 gi|307594162|ref|YP_003900479.1| - 0.18 11.8 0.1 0.36 10.8 0.1 1.4 1 0 0 1 1 1 0 UBA/TS-N domain Thioredoxin_4 PF13462.6 gi|307594163|ref|YP_003900480.1| - 2.9e-11 43.8 0.1 8.7e-11 42.3 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin Pilin_N PF07790.11 gi|307594163|ref|YP_003900480.1| - 0.047 14.6 0.3 0.1 13.5 0.3 1.5 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal CbtB PF09489.10 gi|307594163|ref|YP_003900480.1| - 0.071 13.2 0.8 0.19 11.9 0.8 1.7 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) DSBA PF01323.20 gi|307594163|ref|YP_003900480.1| - 0.17 11.6 1.1 0.33 10.7 0.2 1.8 2 0 0 2 2 2 0 DSBA-like thioredoxin domain ABC2_membrane_5 PF13346.6 gi|307594163|ref|YP_003900480.1| - 0.28 10.7 8.0 0.097 12.2 1.8 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein tRNA-synt_2c PF01411.19 gi|307594165|ref|YP_003900482.1| - 1.6e-117 393.3 0.0 2.1e-117 393.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|307594165|ref|YP_003900482.1| - 1.1e-12 47.8 0.2 2.2e-12 46.9 0.2 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|307594165|ref|YP_003900482.1| - 7.4e-05 22.1 0.1 0.00014 21.3 0.1 1.4 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit DHHA1 PF02272.19 gi|307594165|ref|YP_003900482.1| - 0.0014 19.1 0.0 0.0024 18.3 0.0 1.4 1 0 0 1 1 1 1 DHHA1 domain Lactamase_B PF00753.27 gi|307594166|ref|YP_003900483.1| - 1.7e-17 64.1 3.2 2.6e-17 63.5 3.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|307594166|ref|YP_003900483.1| - 8e-07 28.8 0.1 1.7e-06 27.7 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RL10P_insert PF17777.1 gi|307594167|ref|YP_003900484.1| - 4.4e-22 77.9 0.2 2.1e-20 72.5 0.0 2.4 1 1 1 2 2 2 2 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|307594167|ref|YP_003900484.1| - 2.7e-21 75.6 0.3 1.3e-20 73.4 0.0 2.2 2 0 0 2 2 2 1 Ribosomal protein L10 7TMR-HDED PF07697.11 gi|307594167|ref|YP_003900484.1| - 0.036 14.2 0.8 0.036 14.2 0.8 3.0 4 0 0 4 4 4 0 7TM-HD extracellular DUF4326 PF14216.6 gi|307594167|ref|YP_003900484.1| - 0.066 13.9 0.0 0.17 12.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4326) Ribosomal_L1 PF00687.21 gi|307594168|ref|YP_003900485.1| - 6.8e-39 133.7 1.6 8.5e-39 133.4 1.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family RAC_head PF16717.5 gi|307594168|ref|YP_003900485.1| - 0.12 13.4 4.0 5.3 8.1 0.0 3.2 3 1 0 3 3 3 0 Ribosome-associated complex head domain Ribosomal_L11 PF00298.19 gi|307594169|ref|YP_003900486.1| - 4.7e-16 59.0 0.1 8.4e-16 58.2 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|307594169|ref|YP_003900486.1| - 2.1e-10 40.3 0.8 4.8e-10 39.1 0.5 1.7 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Spt5-NGN PF03439.13 gi|307594170|ref|YP_003900487.1| - 3.1e-15 55.8 0.1 4.1e-14 52.2 0.0 2.1 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|307594170|ref|YP_003900487.1| - 0.00017 21.4 2.5 0.00017 21.4 2.5 2.2 2 0 0 2 2 2 1 KOW motif Phage_holin_Dp1 PF16938.5 gi|307594170|ref|YP_003900487.1| - 0.14 12.4 0.2 0.31 11.3 0.1 1.7 1 1 1 2 2 2 0 Putative phage holin Dp-1 MnhB PF04039.13 gi|307594171|ref|YP_003900488.1| - 0.018 15.4 3.7 0.021 15.1 3.7 1.1 1 0 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter FtsX PF02687.21 gi|307594171|ref|YP_003900488.1| - 0.029 14.8 7.5 0.046 14.2 7.5 1.3 1 0 0 1 1 1 0 FtsX-like permease family DUF2207 PF09972.9 gi|307594171|ref|YP_003900488.1| - 0.072 11.8 4.7 0.074 11.8 4.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Coiled-coil_56 PF09813.9 gi|307594171|ref|YP_003900488.1| - 0.18 11.9 0.0 0.24 11.5 0.0 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 56 DHHC PF01529.20 gi|307594171|ref|YP_003900488.1| - 1.2 9.2 4.8 1.5 8.9 4.8 1.2 1 0 0 1 1 1 0 DHHC palmitoyltransferase SRP54 PF00448.22 gi|307594172|ref|YP_003900489.1| - 8e-68 227.9 0.0 1.1e-67 227.5 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|307594172|ref|YP_003900489.1| - 2.5e-06 27.6 0.7 5.9e-06 26.4 0.7 1.6 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|307594172|ref|YP_003900489.1| - 6.1e-05 22.8 0.1 9.1e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|307594172|ref|YP_003900489.1| - 0.0018 18.5 0.1 0.01 16.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|307594172|ref|YP_003900489.1| - 0.002 18.4 0.0 0.0031 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307594172|ref|YP_003900489.1| - 0.0025 18.2 0.0 0.0047 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 gi|307594172|ref|YP_003900489.1| - 0.0032 17.1 0.2 0.022 14.4 0.2 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|307594172|ref|YP_003900489.1| - 0.0052 16.3 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|307594172|ref|YP_003900489.1| - 0.0056 16.6 0.3 0.057 13.3 0.3 2.4 1 1 0 1 1 1 1 NTPase MMR_HSR1 PF01926.23 gi|307594172|ref|YP_003900489.1| - 0.0079 16.3 0.4 0.075 13.1 0.1 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|307594172|ref|YP_003900489.1| - 0.011 16.0 0.1 0.02 15.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|307594172|ref|YP_003900489.1| - 0.02 13.9 0.7 0.4 9.6 0.1 2.5 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|307594172|ref|YP_003900489.1| - 0.021 15.3 0.0 0.031 14.8 0.0 1.4 1 0 0 1 1 1 0 ABC transporter CbiA PF01656.23 gi|307594172|ref|YP_003900489.1| - 0.026 14.6 0.0 0.098 12.7 0.0 2.0 1 1 1 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|307594172|ref|YP_003900489.1| - 0.033 13.5 0.0 0.052 12.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin PPK2 PF03976.14 gi|307594172|ref|YP_003900489.1| - 0.039 13.4 0.0 0.099 12.1 0.0 1.6 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) DUF507 PF04368.13 gi|307594172|ref|YP_003900489.1| - 0.049 13.6 1.0 1.8 8.5 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF507) MobB PF03205.14 gi|307594172|ref|YP_003900489.1| - 0.052 13.4 0.2 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Helicase_RecD PF05127.14 gi|307594172|ref|YP_003900489.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Helicase AAA PF00004.29 gi|307594172|ref|YP_003900489.1| - 0.085 13.3 0.1 0.21 12.0 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|307594172|ref|YP_003900489.1| - 0.086 12.8 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 gi|307594172|ref|YP_003900489.1| - 0.086 13.3 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|307594172|ref|YP_003900489.1| - 0.097 12.6 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_11 PF13086.6 gi|307594172|ref|YP_003900489.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|307594172|ref|YP_003900489.1| - 0.13 11.5 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Prefoldin PF02996.17 gi|307594173|ref|YP_003900490.1| - 1.4e-16 60.5 0.1 2.4e-16 59.8 0.1 1.4 1 1 0 1 1 1 1 Prefoldin subunit DUF3584 PF12128.8 gi|307594173|ref|YP_003900490.1| - 0.00097 16.8 1.4 0.064 10.8 0.2 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) NPV_P10 PF05531.12 gi|307594173|ref|YP_003900490.1| - 0.0093 16.4 4.0 0.14 12.6 0.1 2.3 2 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Prefoldin_2 PF01920.20 gi|307594173|ref|YP_003900490.1| - 0.012 15.5 0.2 1.9 8.5 0.0 2.5 1 1 2 3 3 3 0 Prefoldin subunit Tektin PF03148.14 gi|307594173|ref|YP_003900490.1| - 0.022 13.5 4.7 0.1 11.4 0.2 2.0 2 0 0 2 2 2 0 Tektin family DUF5082 PF16888.5 gi|307594173|ref|YP_003900490.1| - 0.041 14.2 5.1 0.94 9.8 0.2 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) BLOC1_2 PF10046.9 gi|307594173|ref|YP_003900490.1| - 0.15 12.3 2.4 4.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|307594173|ref|YP_003900490.1| - 0.18 10.7 2.9 4.9 5.9 0.1 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein ANAPC_CDC26 PF10471.9 gi|307594173|ref|YP_003900490.1| - 0.23 12.3 0.1 0.23 12.3 0.1 2.3 2 1 0 2 2 2 0 Anaphase-promoting complex APC subunit CDC26 MerR-DNA-bind PF09278.11 gi|307594173|ref|YP_003900490.1| - 0.32 11.6 6.7 9 6.9 2.7 2.7 2 1 0 2 2 2 0 MerR, DNA binding Ribosomal_L18A PF01775.17 gi|307594174|ref|YP_003900491.1| - 1.9e-11 44.1 0.1 2.7e-11 43.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A HTH_3 PF01381.22 gi|307594175|ref|YP_003900492.1| - 1.9e-12 47.0 0.7 3.3e-12 46.3 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|307594175|ref|YP_003900492.1| - 6.1e-09 36.1 0.2 1.2e-08 35.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|307594175|ref|YP_003900492.1| - 1.3e-06 28.3 0.4 2.2e-06 27.6 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|307594175|ref|YP_003900492.1| - 5.1e-06 26.3 0.4 1.1e-05 25.2 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.10 gi|307594175|ref|YP_003900492.1| - 0.0099 16.2 0.5 0.022 15.1 0.5 1.6 1 0 0 1 1 1 1 Archaeal TRASH domain GTP-bdg_N PF13167.6 gi|307594176|ref|YP_003900493.1| - 5.2e-23 81.5 0.1 1.3e-22 80.3 0.0 1.7 2 0 0 2 2 1 1 GTP-binding GTPase N-terminal GTP-bdg_M PF16360.5 gi|307594176|ref|YP_003900493.1| - 9.2e-16 58.2 2.7 1.7e-15 57.4 2.7 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region MMR_HSR1 PF01926.23 gi|307594176|ref|YP_003900493.1| - 2.4e-15 56.6 0.0 5.5e-15 55.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|307594176|ref|YP_003900493.1| - 7.6e-06 25.5 0.0 1.8e-05 24.3 0.0 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|307594176|ref|YP_003900493.1| - 0.0039 17.2 0.0 0.0078 16.2 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|307594176|ref|YP_003900493.1| - 0.0041 17.0 0.0 3.5 7.5 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_28 PF13521.6 gi|307594176|ref|YP_003900493.1| - 0.024 14.9 0.0 0.054 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|307594176|ref|YP_003900493.1| - 0.032 13.8 0.0 7.4 6.1 0.0 2.6 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain PduV-EutP PF10662.9 gi|307594176|ref|YP_003900493.1| - 0.033 13.9 0.0 7.5 6.3 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|307594176|ref|YP_003900493.1| - 0.034 13.6 0.1 0.11 12.0 0.1 1.8 1 1 0 1 1 1 0 ADP-ribosylation factor family Pox_A6 PF04924.12 gi|307594176|ref|YP_003900493.1| - 0.049 12.6 0.0 0.077 11.9 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A6 protein cobW PF02492.19 gi|307594176|ref|YP_003900493.1| - 0.11 12.0 0.4 0.7 9.5 0.0 2.1 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|307594176|ref|YP_003900493.1| - 0.13 12.8 0.0 0.27 11.7 0.0 1.4 1 0 0 1 1 1 0 ABC transporter MnmE_helical PF12631.7 gi|307594176|ref|YP_003900493.1| - 0.14 12.3 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 MnmE helical domain SRPRB PF09439.10 gi|307594176|ref|YP_003900493.1| - 0.15 11.5 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit TsaE PF02367.17 gi|307594176|ref|YP_003900493.1| - 0.15 12.0 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TFIIE_alpha PF02002.17 gi|307594177|ref|YP_003900494.1| - 9.3e-09 35.1 0.4 1.7e-08 34.3 0.4 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|307594177|ref|YP_003900494.1| - 0.0044 17.3 0.1 0.013 15.9 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|307594177|ref|YP_003900494.1| - 0.0094 15.7 0.5 0.016 15.0 0.5 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain NS3 PF17530.2 gi|307594177|ref|YP_003900494.1| - 0.02 14.5 0.2 0.03 13.9 0.2 1.3 1 0 0 1 1 1 0 Non-structural protein NS3 TrmB PF01978.19 gi|307594177|ref|YP_003900494.1| - 0.021 14.7 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB z-alpha PF02295.17 gi|307594177|ref|YP_003900494.1| - 0.053 13.6 0.0 0.093 12.8 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain MarR_2 PF12802.7 gi|307594177|ref|YP_003900494.1| - 0.064 13.1 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|307594177|ref|YP_003900494.1| - 0.078 13.0 0.2 0.18 11.8 0.2 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|307594177|ref|YP_003900494.1| - 0.12 12.2 0.2 0.25 11.2 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|307594177|ref|YP_003900494.1| - 0.43 10.7 2.4 0.24 11.5 0.4 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Pyr_redox_2 PF07992.14 gi|307594178|ref|YP_003900495.1| - 8.7e-63 212.3 3.4 1.1e-62 212.0 3.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307594178|ref|YP_003900495.1| - 8.5e-25 87.1 6.7 7e-23 81.0 0.5 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|307594178|ref|YP_003900495.1| - 3.7e-16 59.4 0.0 3.7e-16 59.4 0.0 2.6 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|307594178|ref|YP_003900495.1| - 2.8e-15 56.3 6.1 1.2e-13 51.0 0.6 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|307594178|ref|YP_003900495.1| - 6.3e-10 39.2 0.6 0.0012 19.0 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|307594178|ref|YP_003900495.1| - 4.5e-09 36.3 12.4 0.0045 16.6 0.6 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|307594178|ref|YP_003900495.1| - 2e-08 33.4 7.0 0.034 12.9 0.4 4.3 3 1 1 4 4 4 3 HI0933-like protein FAD_binding_2 PF00890.24 gi|307594178|ref|YP_003900495.1| - 1.4e-05 24.4 6.6 0.067 12.3 0.7 4.0 4 0 0 4 4 4 2 FAD binding domain GIDA PF01134.22 gi|307594178|ref|YP_003900495.1| - 1.5e-05 24.3 6.9 0.1 11.6 0.0 3.9 4 0 0 4 4 4 2 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|307594178|ref|YP_003900495.1| - 2.1e-05 24.0 7.3 0.017 14.4 0.4 2.7 3 0 0 3 3 2 2 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|307594178|ref|YP_003900495.1| - 7.2e-05 22.1 0.3 0.0086 15.2 0.0 2.6 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.19 gi|307594178|ref|YP_003900495.1| - 0.0002 20.8 0.3 0.016 14.5 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|307594178|ref|YP_003900495.1| - 0.00089 19.7 1.3 1.5 9.3 0.2 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|307594178|ref|YP_003900495.1| - 0.0013 17.9 1.2 0.32 10.0 0.3 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|307594178|ref|YP_003900495.1| - 0.0031 16.9 12.1 0.35 10.2 0.6 3.7 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|307594178|ref|YP_003900495.1| - 0.0056 16.0 0.6 0.19 10.9 0.0 2.4 2 0 0 2 2 2 1 FAD binding domain TrkA_N PF02254.18 gi|307594178|ref|YP_003900495.1| - 0.0057 16.9 0.2 0.35 11.1 0.0 2.5 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_9 PF13454.6 gi|307594178|ref|YP_003900495.1| - 0.016 15.2 8.2 8.6 6.3 0.1 4.1 3 1 0 4 4 4 0 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|307594178|ref|YP_003900495.1| - 0.027 14.3 0.4 0.099 12.5 0.0 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|307594178|ref|YP_003900495.1| - 0.22 10.3 3.3 0.34 9.7 0.0 2.4 3 0 0 3 3 3 0 Tryptophan halogenase DUF5612 PF18462.1 gi|307594178|ref|YP_003900495.1| - 0.81 9.5 4.6 3.2 7.5 0.6 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF5612) SHQ1 PF04925.15 gi|307594179|ref|YP_003900496.1| - 0.086 12.4 2.0 0.55 9.8 0.1 2.7 2 1 1 3 3 3 0 SHQ1 protein DUF5348 PF17295.2 gi|307594179|ref|YP_003900496.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5348) G_glu_transpept PF01019.21 gi|307594180|ref|YP_003900497.1| - 5.1e-117 391.8 0.0 6.3e-117 391.5 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Peripla_BP_2 PF01497.18 gi|307594181|ref|YP_003900498.1| - 9e-26 90.9 0.0 1.2e-25 90.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein PRT_C PF08372.10 gi|307594181|ref|YP_003900498.1| - 0.18 11.6 0.1 0.32 10.7 0.1 1.3 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal FecCD PF01032.18 gi|307594182|ref|YP_003900499.1| - 2.4e-68 230.4 41.8 2.8e-68 230.2 41.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|307594182|ref|YP_003900499.1| - 8.7e-05 22.1 21.9 8.7e-05 22.1 21.9 1.9 1 1 0 1 1 1 1 ABC 3 transport family Gly-zipper_YMGG PF13441.6 gi|307594182|ref|YP_003900499.1| - 0.57 10.0 4.1 0.16 11.8 0.6 1.8 2 0 0 2 2 2 0 YMGG-like Gly-zipper ABC_tran PF00005.27 gi|307594183|ref|YP_003900500.1| - 2.5e-24 86.3 0.0 3.5e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307594183|ref|YP_003900500.1| - 2e-12 47.6 0.2 3e-05 24.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307594183|ref|YP_003900500.1| - 7.4e-09 35.4 0.0 0.0011 18.4 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|307594183|ref|YP_003900500.1| - 1.2e-06 28.5 0.0 0.0015 18.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|307594183|ref|YP_003900500.1| - 7.3e-05 23.4 0.0 8.5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|307594183|ref|YP_003900500.1| - 0.00068 19.7 0.0 0.0057 16.7 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|307594183|ref|YP_003900500.1| - 0.0012 18.5 0.0 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|307594183|ref|YP_003900500.1| - 0.0017 18.8 0.1 0.011 16.1 0.0 2.3 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|307594183|ref|YP_003900500.1| - 0.0027 18.1 0.0 0.0073 16.7 0.0 1.7 3 0 0 3 3 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|307594183|ref|YP_003900500.1| - 0.0094 16.1 0.1 0.024 14.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|307594183|ref|YP_003900500.1| - 0.014 15.3 0.0 0.02 14.8 0.0 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|307594183|ref|YP_003900500.1| - 0.016 14.5 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.19 gi|307594183|ref|YP_003900500.1| - 0.021 14.4 0.2 0.04 13.5 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|307594183|ref|YP_003900500.1| - 0.023 15.0 0.1 0.17 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|307594183|ref|YP_003900500.1| - 0.028 14.0 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|307594183|ref|YP_003900500.1| - 0.029 14.3 0.2 0.081 12.8 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|307594183|ref|YP_003900500.1| - 0.073 12.6 0.0 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|307594183|ref|YP_003900500.1| - 0.086 12.6 0.1 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|307594183|ref|YP_003900500.1| - 0.094 13.1 0.1 0.34 11.2 0.0 1.9 2 1 1 3 3 3 0 AAA domain AAA_35 PF14516.6 gi|307594183|ref|YP_003900500.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain NB-ARC PF00931.22 gi|307594183|ref|YP_003900500.1| - 0.12 11.6 0.0 0.22 10.7 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.6 gi|307594183|ref|YP_003900500.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|307594183|ref|YP_003900500.1| - 0.13 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AFOR_C PF01314.18 gi|307594184|ref|YP_003900501.1| - 2.7e-112 375.5 0.3 3.4e-112 375.2 0.3 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|307594184|ref|YP_003900501.1| - 5e-74 248.5 0.0 9.6e-74 247.5 0.0 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Cob_adeno_trans PF01923.18 gi|307594185|ref|YP_003900502.1| - 2.7e-05 24.4 0.0 3.5e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Cobalamin adenosyltransferase MM_CoA_mutase PF01642.22 gi|307594186|ref|YP_003900503.1| - 3.1e-212 705.7 0.0 3.6e-212 705.5 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase B12-binding PF02310.19 gi|307594187|ref|YP_003900504.1| - 1e-24 86.9 0.3 1.2e-24 86.7 0.3 1.0 1 0 0 1 1 1 1 B12 binding domain PGM_PMM_I PF02878.16 gi|307594187|ref|YP_003900504.1| - 0.0032 17.2 0.0 0.0042 16.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I OKR_DC_1_N PF03709.15 gi|307594187|ref|YP_003900504.1| - 0.038 14.3 0.0 0.053 13.8 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain LytR_C PF13399.6 gi|307594187|ref|YP_003900504.1| - 0.063 14.3 0.0 0.094 13.7 0.0 1.4 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator MeaB PF03308.16 gi|307594188|ref|YP_003900505.1| - 7.2e-73 244.9 0.0 8.6e-72 241.3 0.0 2.0 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Glyoxalase_4 PF13669.6 gi|307594188|ref|YP_003900505.1| - 2e-19 69.9 0.0 3.4e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|307594188|ref|YP_003900505.1| - 2.4e-10 40.8 0.0 3.8e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|307594188|ref|YP_003900505.1| - 1.1e-08 35.3 0.0 2.2e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily cobW PF02492.19 gi|307594188|ref|YP_003900505.1| - 2.2e-08 33.9 0.0 1.2e-07 31.6 0.0 2.2 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|307594188|ref|YP_003900505.1| - 0.0002 20.5 0.1 0.001 18.2 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein DUF87 PF01935.17 gi|307594188|ref|YP_003900505.1| - 0.00022 21.4 0.0 0.00045 20.4 0.0 1.8 2 1 0 2 2 1 1 Helicase HerA, central domain ABC_tran PF00005.27 gi|307594188|ref|YP_003900505.1| - 0.00038 21.0 0.0 0.00075 20.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|307594188|ref|YP_003900505.1| - 0.00096 19.6 0.0 0.0047 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain ATP_bind_1 PF03029.17 gi|307594188|ref|YP_003900505.1| - 0.0016 18.3 0.0 0.0068 16.2 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|307594188|ref|YP_003900505.1| - 0.0017 18.6 0.0 0.0055 17.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|307594188|ref|YP_003900505.1| - 0.0018 18.8 0.2 0.032 14.8 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|307594188|ref|YP_003900505.1| - 0.0026 17.5 0.0 0.0071 16.1 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|307594188|ref|YP_003900505.1| - 0.0084 16.0 0.1 0.025 14.5 0.1 1.8 2 0 0 2 2 1 1 NTPase MMR_HSR1 PF01926.23 gi|307594188|ref|YP_003900505.1| - 0.0097 16.0 0.0 0.021 14.9 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|307594188|ref|YP_003900505.1| - 0.01 15.6 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|307594188|ref|YP_003900505.1| - 0.015 15.2 0.0 1.1 9.2 0.0 2.6 3 0 0 3 3 2 0 RsgA GTPase RNA_helicase PF00910.22 gi|307594188|ref|YP_003900505.1| - 0.022 15.1 0.0 0.062 13.7 0.0 1.8 2 0 0 2 2 1 0 RNA helicase KAP_NTPase PF07693.14 gi|307594188|ref|YP_003900505.1| - 0.025 13.8 0.0 0.042 13.1 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_30 PF13604.6 gi|307594188|ref|YP_003900505.1| - 0.029 14.1 0.0 0.089 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|307594188|ref|YP_003900505.1| - 0.03 14.7 0.0 0.051 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|307594188|ref|YP_003900505.1| - 0.031 14.3 0.0 0.063 13.3 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.14 gi|307594188|ref|YP_003900505.1| - 0.034 14.1 0.1 0.12 12.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_11 PF13086.6 gi|307594188|ref|YP_003900505.1| - 0.036 13.9 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|307594188|ref|YP_003900505.1| - 0.038 12.9 0.1 0.084 11.8 0.0 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_25 PF13481.6 gi|307594188|ref|YP_003900505.1| - 0.052 13.1 0.0 0.14 11.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|307594188|ref|YP_003900505.1| - 0.053 12.9 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_14 PF13173.6 gi|307594188|ref|YP_003900505.1| - 0.072 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|307594188|ref|YP_003900505.1| - 0.072 13.6 0.2 0.25 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|307594188|ref|YP_003900505.1| - 0.082 12.3 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|307594188|ref|YP_003900505.1| - 0.11 12.3 0.0 0.25 11.0 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|307594188|ref|YP_003900505.1| - 0.12 12.9 0.0 0.39 11.1 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|307594188|ref|YP_003900505.1| - 0.12 12.7 0.0 0.29 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF1338 PF07063.13 gi|307594188|ref|YP_003900505.1| - 0.12 11.5 0.0 11 5.1 0.0 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF1338) AAA_33 PF13671.6 gi|307594188|ref|YP_003900505.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|307594188|ref|YP_003900505.1| - 0.13 11.5 0.0 0.31 10.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Viral_helicase1 PF01443.18 gi|307594188|ref|YP_003900505.1| - 0.15 11.7 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|307594188|ref|YP_003900505.1| - 0.19 10.9 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|307594188|ref|YP_003900505.1| - 0.21 11.1 0.0 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2070 PF09843.9 gi|307594189|ref|YP_003900506.1| - 4.3e-124 414.9 10.4 4.8e-124 414.7 10.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF2153 PF09921.9 gi|307594190|ref|YP_003900507.1| - 4.5e-45 152.4 1.9 5.4e-45 152.2 1.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) MTHFR PF02219.17 gi|307594190|ref|YP_003900507.1| - 0.11 11.8 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase Penicillinase_R PF03965.16 gi|307594191|ref|YP_003900508.1| - 5.7e-11 42.8 0.1 6e-11 42.7 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor PadR PF03551.14 gi|307594191|ref|YP_003900508.1| - 0.0097 15.9 0.1 0.019 14.9 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4423 PF14394.6 gi|307594191|ref|YP_003900508.1| - 0.017 14.9 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Sulfolobus_pRN PF05584.11 gi|307594191|ref|YP_003900508.1| - 0.027 14.5 0.2 0.048 13.7 0.2 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein TrmB PF01978.19 gi|307594191|ref|YP_003900508.1| - 0.028 14.3 0.1 0.058 13.3 0.1 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CtsR_C PF17727.1 gi|307594191|ref|YP_003900508.1| - 0.077 13.1 0.3 0.79 9.9 0.0 2.6 2 1 1 3 3 3 0 CtsR C-terminal dimerization domain Met_10 PF02475.16 gi|307594192|ref|YP_003900509.1| - 6.9e-48 163.0 0.0 8.4e-48 162.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|307594192|ref|YP_003900509.1| - 0.0031 16.7 0.0 0.0042 16.3 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|307594192|ref|YP_003900509.1| - 0.055 13.0 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF3328 PF11807.8 gi|307594192|ref|YP_003900509.1| - 0.18 11.6 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3328) ATP-synt_ab PF00006.25 gi|307594193|ref|YP_003900510.1| - 1.8e-65 220.6 0.0 2.3e-65 220.2 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|307594193|ref|YP_003900510.1| - 1.1e-07 32.2 2.4 2e-07 31.4 2.4 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Phage-MuB_C PF09077.11 gi|307594193|ref|YP_003900510.1| - 0.038 13.9 0.0 0.53 10.2 0.0 2.3 2 0 0 2 2 2 0 Mu B transposition protein, C terminal RHH_1 PF01402.21 gi|307594194|ref|YP_003900511.1| - 4.4e-11 42.3 0.1 8.7e-11 41.4 0.0 1.5 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|307594194|ref|YP_003900511.1| - 0.0013 19.0 0.0 0.0013 18.9 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family HicB_lk_antitox PF15919.5 gi|307594194|ref|YP_003900511.1| - 0.049 13.7 0.0 0.092 12.9 0.0 1.5 1 1 1 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system Flavoprotein PF02441.19 gi|307594195|ref|YP_003900512.1| - 6.6e-29 100.7 0.1 8.2e-29 100.4 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein Dak2 PF02734.17 gi|307594195|ref|YP_003900512.1| - 0.084 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 DAK2 domain ATP_bind_3 PF01171.20 gi|307594196|ref|YP_003900513.1| - 7.1e-10 38.9 0.0 1.4e-09 38.0 0.0 1.4 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|307594196|ref|YP_003900513.1| - 0.0017 18.4 0.0 0.0028 17.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.15 gi|307594196|ref|YP_003900513.1| - 0.017 14.7 0.5 0.017 14.7 0.5 2.2 2 0 0 2 2 2 0 RecR protein zn-ribbon_14 PF16503.5 gi|307594196|ref|YP_003900513.1| - 0.045 13.3 1.2 0.045 13.3 1.2 2.4 2 0 0 2 2 2 0 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|307594196|ref|YP_003900513.1| - 0.062 12.1 0.0 0.1 11.4 0.0 1.4 1 1 0 1 1 1 0 tRNA methyl transferase DZR PF12773.7 gi|307594196|ref|YP_003900513.1| - 0.086 12.9 6.0 3.4 7.8 0.4 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-C4pol PF14260.6 gi|307594196|ref|YP_003900513.1| - 0.6 10.6 3.3 24 5.5 0.4 2.6 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta ACT PF01842.25 gi|307594197|ref|YP_003900514.1| - 5.7e-12 45.2 0.3 1.8e-11 43.6 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|307594197|ref|YP_003900514.1| - 5.1e-06 26.4 0.0 8.8e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|307594197|ref|YP_003900514.1| - 6.7e-05 22.6 0.0 0.00012 21.7 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|307594197|ref|YP_003900514.1| - 0.00019 21.9 0.1 0.00041 20.9 0.1 1.6 1 0 0 1 1 1 1 ACT domain UBA_6 PF18039.1 gi|307594197|ref|YP_003900514.1| - 0.0097 15.8 0.0 0.16 11.9 0.0 2.4 2 0 0 2 2 2 1 UBA-like domain DUF4393 PF14337.6 gi|307594197|ref|YP_003900514.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) tRNA-synt_1 PF00133.22 gi|307594198|ref|YP_003900515.1| - 2.1e-117 392.9 0.0 4.9e-116 388.4 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|307594198|ref|YP_003900515.1| - 2.2e-28 99.1 0.1 4e-28 98.3 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|307594198|ref|YP_003900515.1| - 1.6e-27 96.3 0.0 8.5e-16 57.7 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|307594198|ref|YP_003900515.1| - 0.0049 16.4 0.0 0.2 11.2 0.0 2.3 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|307594198|ref|YP_003900515.1| - 0.02 13.8 0.0 1.2 8.0 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) MFS_1 PF07690.16 gi|307594199|ref|YP_003900516.1| - 8.7e-14 51.2 71.8 1.2e-08 34.3 32.9 2.1 1 1 0 2 2 2 2 Major Facilitator Superfamily EF1_GNE PF00736.19 gi|307594200|ref|YP_003900517.1| - 2.2e-15 56.6 0.1 2.5e-15 56.4 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AAA PF00004.29 gi|307594201|ref|YP_003900518.1| - 3.1e-99 328.6 0.0 7.1e-49 165.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|307594201|ref|YP_003900518.1| - 1.7e-31 108.2 0.9 7.5e-30 103.0 1.0 2.8 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|307594201|ref|YP_003900518.1| - 8.7e-31 105.5 10.6 1.1e-16 60.3 0.2 3.4 3 1 0 3 3 2 2 AAA+ lid domain RuvB_N PF05496.12 gi|307594201|ref|YP_003900518.1| - 2.1e-15 56.8 0.0 3.4e-07 30.1 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|307594201|ref|YP_003900518.1| - 2.3e-13 50.9 0.3 1.5e-05 25.4 0.0 4.1 3 1 0 4 4 4 2 AAA ATPase domain AAA_5 PF07728.14 gi|307594201|ref|YP_003900518.1| - 8.5e-13 48.5 0.7 3.7e-05 23.7 0.2 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|307594201|ref|YP_003900518.1| - 9e-13 48.7 0.0 3.6e-06 27.2 0.0 3.2 3 1 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|307594201|ref|YP_003900518.1| - 2.8e-12 47.1 0.2 0.00027 21.2 0.0 4.2 3 1 1 4 4 4 2 AAA domain AAA_14 PF13173.6 gi|307594201|ref|YP_003900518.1| - 7.1e-11 42.3 0.0 8.7e-05 22.6 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.6 gi|307594201|ref|YP_003900518.1| - 7.3e-11 42.4 0.0 0.00011 22.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|307594201|ref|YP_003900518.1| - 9.4e-11 41.3 0.4 2.5e-10 40.0 0.4 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 UFD1 PF03152.14 gi|307594201|ref|YP_003900518.1| - 3.4e-09 36.4 0.2 6.6e-09 35.5 0.2 1.4 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 TIP49 PF06068.13 gi|307594201|ref|YP_003900518.1| - 4.4e-09 36.0 4.2 0.00082 18.7 0.0 3.2 3 0 0 3 3 3 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|307594201|ref|YP_003900518.1| - 1.7e-08 34.4 0.0 0.0095 15.7 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|307594201|ref|YP_003900518.1| - 4e-08 33.9 0.0 0.017 15.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|307594201|ref|YP_003900518.1| - 8.9e-08 32.5 0.0 0.007 16.6 0.0 2.9 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|307594201|ref|YP_003900518.1| - 1.1e-07 31.7 0.0 0.00082 19.3 0.0 3.0 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain Mg_chelatase PF01078.21 gi|307594201|ref|YP_003900518.1| - 6e-07 29.1 1.3 0.027 13.9 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|307594201|ref|YP_003900518.1| - 1.5e-06 28.0 0.1 0.12 12.0 0.0 3.4 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|307594201|ref|YP_003900518.1| - 1.6e-06 28.0 0.0 0.05 13.3 0.0 3.2 3 0 0 3 3 3 2 AAA domain PhoH PF02562.16 gi|307594201|ref|YP_003900518.1| - 5.3e-06 26.0 0.7 0.099 12.1 0.1 2.9 2 0 0 2 2 2 2 PhoH-like protein AAA_7 PF12775.7 gi|307594201|ref|YP_003900518.1| - 1.1e-05 25.1 0.1 0.15 11.5 0.1 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|307594201|ref|YP_003900518.1| - 1.2e-05 25.6 0.0 0.23 11.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Zeta_toxin PF06414.12 gi|307594201|ref|YP_003900518.1| - 1.3e-05 24.6 0.4 0.21 10.8 0.0 3.1 3 0 0 3 3 3 2 Zeta toxin ABC_tran PF00005.27 gi|307594201|ref|YP_003900518.1| - 1.3e-05 25.7 0.0 0.21 12.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter DUF815 PF05673.13 gi|307594201|ref|YP_003900518.1| - 1.5e-05 24.3 0.0 0.11 11.6 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|307594201|ref|YP_003900518.1| - 3.4e-05 23.5 3.0 1.6 8.3 0.0 4.3 4 0 0 4 4 4 2 AAA domain TsaE PF02367.17 gi|307594201|ref|YP_003900518.1| - 9.6e-05 22.4 0.1 0.85 9.6 0.0 2.8 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|307594201|ref|YP_003900518.1| - 0.00027 20.8 0.0 1 9.2 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Guanylate_kin PF00625.21 gi|307594201|ref|YP_003900518.1| - 0.00048 19.9 1.4 20 4.8 0.0 4.7 3 2 2 5 5 4 0 Guanylate kinase AAA_19 PF13245.6 gi|307594201|ref|YP_003900518.1| - 0.00056 20.3 1.4 1.3 9.4 0.1 3.2 3 0 0 3 3 3 1 AAA domain ATPase PF06745.13 gi|307594201|ref|YP_003900518.1| - 0.00065 19.1 7.9 0.26 10.6 0.0 4.0 3 2 1 4 4 3 2 KaiC NACHT PF05729.12 gi|307594201|ref|YP_003900518.1| - 0.00067 19.6 1.0 1.1 9.1 0.1 3.1 3 0 0 3 3 3 1 NACHT domain Parvo_NS1 PF01057.17 gi|307594201|ref|YP_003900518.1| - 0.00077 18.6 0.3 1.1 8.2 0.0 2.5 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|307594201|ref|YP_003900518.1| - 0.00087 19.1 0.4 1.3 8.7 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|307594201|ref|YP_003900518.1| - 0.0016 18.3 0.1 2.1 8.1 0.0 2.7 3 0 0 3 3 2 1 AAA domain Bac_DnaA PF00308.18 gi|307594201|ref|YP_003900518.1| - 0.0017 18.3 0.1 1.2 8.9 0.0 3.5 4 1 0 4 4 3 1 Bacterial dnaA protein DUF2075 PF09848.9 gi|307594201|ref|YP_003900518.1| - 0.0025 17.1 0.1 1.4 8.0 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.6 gi|307594201|ref|YP_003900518.1| - 0.0039 17.3 0.0 1.6 8.9 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain PduV-EutP PF10662.9 gi|307594201|ref|YP_003900518.1| - 0.011 15.5 0.0 2.6 7.8 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.6 gi|307594201|ref|YP_003900518.1| - 0.014 15.8 0.6 12 6.3 0.0 3.6 4 0 0 4 4 2 0 AAA domain ATP-synt_ab PF00006.25 gi|307594201|ref|YP_003900518.1| - 0.016 14.9 0.0 7.6 6.1 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.22 gi|307594201|ref|YP_003900518.1| - 0.017 14.3 0.1 9.8 5.3 0.0 3.1 4 0 0 4 4 3 0 NB-ARC domain AAA_29 PF13555.6 gi|307594201|ref|YP_003900518.1| - 0.02 14.6 0.0 7.2 6.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|307594201|ref|YP_003900518.1| - 0.02 13.9 0.0 6 5.8 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein ResIII PF04851.15 gi|307594201|ref|YP_003900518.1| - 0.022 14.7 0.0 12 5.9 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit SRPRB PF09439.10 gi|307594201|ref|YP_003900518.1| - 0.033 13.6 0.0 3.6 7.0 0.0 2.7 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF4175 PF13779.6 gi|307594201|ref|YP_003900518.1| - 0.04 11.8 1.2 0.063 11.2 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Viral_helicase1 PF01443.18 gi|307594201|ref|YP_003900518.1| - 0.041 13.6 0.0 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Cytidylate_kin PF02224.18 gi|307594201|ref|YP_003900518.1| - 0.046 13.4 0.1 11 5.7 0.0 2.7 2 0 0 2 2 2 0 Cytidylate kinase cobW PF02492.19 gi|307594201|ref|YP_003900518.1| - 0.052 13.1 0.0 14 5.3 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AFG1_ATPase PF03969.16 gi|307594201|ref|YP_003900518.1| - 0.09 11.6 0.1 6.6 5.5 0.0 2.6 3 0 0 3 3 2 0 AFG1-like ATPase SKI PF01202.22 gi|307594201|ref|YP_003900518.1| - 0.13 12.3 0.0 22 5.1 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase IPT PF01745.16 gi|307594201|ref|YP_003900518.1| - 0.15 11.5 0.3 14 4.9 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase Roc PF08477.13 gi|307594201|ref|YP_003900518.1| - 0.15 12.3 0.0 12 6.1 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 gi|307594201|ref|YP_003900518.1| - 0.88 9.5 8.6 16 5.4 0.0 4.5 4 1 1 5 5 4 0 NTPase XPG_I PF00867.18 gi|307594203|ref|YP_003900520.1| - 7e-25 87.2 0.0 1.2e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|307594203|ref|YP_003900520.1| - 3.8e-20 72.2 0.0 7.8e-20 71.2 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|307594203|ref|YP_003900520.1| - 4.7e-06 27.1 0.0 1.7e-05 25.3 0.0 2.0 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HTH_Tnp_1 PF01527.20 gi|307594203|ref|YP_003900520.1| - 0.023 15.0 0.4 0.075 13.4 0.1 1.9 2 0 0 2 2 2 0 Transposase HHH_5 PF14520.6 gi|307594203|ref|YP_003900520.1| - 0.055 14.1 0.1 0.34 11.6 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain NADHdh PF00146.21 gi|307594204|ref|YP_003900521.1| - 8.9e-83 278.0 21.7 1.3e-82 277.5 21.7 1.2 1 0 0 1 1 1 1 NADH dehydrogenase zf-C2H2_4 PF13894.6 gi|307594205|ref|YP_003900522.1| - 0.0001 22.8 0.1 0.00023 21.7 0.1 1.7 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2HC_2 PF13913.6 gi|307594205|ref|YP_003900522.1| - 0.00022 21.0 0.0 0.00035 20.4 0.0 1.3 1 0 0 1 1 1 1 zinc-finger of a C2HC-type zf-C2H2 PF00096.26 gi|307594205|ref|YP_003900522.1| - 0.00031 21.0 0.0 0.00067 20.0 0.0 1.5 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_9 PF16293.5 gi|307594205|ref|YP_003900522.1| - 0.0012 18.6 0.1 0.0014 18.5 0.1 1.2 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) zf-C2H2_jaz PF12171.8 gi|307594205|ref|YP_003900522.1| - 0.006 16.8 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-Di19 PF05605.12 gi|307594205|ref|YP_003900522.1| - 0.015 15.5 0.1 0.021 15.1 0.1 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF3116 PF11313.8 gi|307594205|ref|YP_003900522.1| - 0.042 13.7 0.1 0.068 13.0 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) Zn-C2H2_12 PF18112.1 gi|307594205|ref|YP_003900522.1| - 0.1 13.1 0.1 0.26 11.8 0.1 1.8 1 0 0 1 1 1 0 Autophagy receptor zinc finger-C2H2 domain TBPIP PF07106.13 gi|307594207|ref|YP_003900524.1| - 0.013 15.4 0.3 0.029 14.3 0.3 1.6 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain LMP PF04778.12 gi|307594207|ref|YP_003900524.1| - 0.054 13.4 4.0 0.069 13.1 4.0 1.3 1 1 0 1 1 1 0 LMP repeated region MMR_HSR1_C PF08438.10 gi|307594207|ref|YP_003900524.1| - 0.1 13.2 0.4 0.19 12.3 0.4 1.7 1 1 0 1 1 1 0 GTPase of unknown function C-terminal Sacchrp_dh_C PF16653.5 gi|307594209|ref|YP_003900526.1| - 7.2e-24 85.3 0.0 9.6e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|307594209|ref|YP_003900526.1| - 2.8e-07 30.9 0.0 4.9e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|307594209|ref|YP_003900526.1| - 1.1e-06 28.9 0.0 1.8e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|307594209|ref|YP_003900526.1| - 2.7e-05 24.1 0.1 4.9e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|307594209|ref|YP_003900526.1| - 2.8e-05 24.6 0.1 5.9e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|307594209|ref|YP_003900526.1| - 6.7e-05 23.1 0.1 0.00014 22.1 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain Semialdhyde_dh PF01118.24 gi|307594209|ref|YP_003900526.1| - 8.9e-05 22.9 0.0 0.00015 22.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|307594209|ref|YP_003900526.1| - 0.00029 20.9 0.0 0.00057 19.9 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|307594209|ref|YP_003900526.1| - 0.0024 17.2 0.1 0.0049 16.2 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|307594209|ref|YP_003900526.1| - 0.0046 16.9 0.1 0.0093 16.0 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DapB_N PF01113.20 gi|307594209|ref|YP_003900526.1| - 0.0053 16.9 0.1 0.011 15.9 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Rossmann-like PF10727.9 gi|307594209|ref|YP_003900526.1| - 0.012 15.5 0.2 0.023 14.5 0.2 1.5 1 0 0 1 1 1 0 Rossmann-like domain CoA_binding PF02629.19 gi|307594209|ref|YP_003900526.1| - 0.017 15.8 0.1 0.037 14.7 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain Shikimate_DH PF01488.20 gi|307594209|ref|YP_003900526.1| - 0.017 15.2 0.1 0.033 14.3 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|307594209|ref|YP_003900526.1| - 0.019 14.6 0.2 0.036 13.7 0.2 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 gi|307594209|ref|YP_003900526.1| - 0.021 15.6 0.1 0.034 15.0 0.1 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PDH PF02153.17 gi|307594209|ref|YP_003900526.1| - 0.025 13.6 0.2 0.096 11.7 0.1 2.0 2 1 0 2 2 2 0 Prephenate dehydrogenase AlaDh_PNT_C PF01262.21 gi|307594209|ref|YP_003900526.1| - 0.039 13.3 0.2 0.069 12.4 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_25 PF13649.6 gi|307594209|ref|YP_003900526.1| - 0.067 13.9 0.0 0.16 12.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain UDPG_MGDP_dh_N PF03721.14 gi|307594209|ref|YP_003900526.1| - 0.073 12.6 0.1 0.16 11.6 0.1 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AA_permease_2 PF13520.6 gi|307594210|ref|YP_003900527.1| - 2.7e-35 122.1 51.3 2.7e-35 122.1 51.3 2.7 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|307594210|ref|YP_003900527.1| - 2.3e-19 69.3 44.1 2.3e-19 69.3 44.1 3.2 1 1 2 3 3 3 1 Amino acid permease SID-1_RNA_chan PF13965.6 gi|307594210|ref|YP_003900527.1| - 0.0029 16.1 1.2 0.011 14.2 1.2 2.0 1 0 0 1 1 1 1 dsRNA-gated channel SID-1 AA_permease_2 PF13520.6 gi|307594211|ref|YP_003900528.1| - 1.4e-37 129.5 75.3 1.4e-37 129.5 75.3 2.5 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|307594211|ref|YP_003900528.1| - 1.8e-20 73.0 61.6 1.8e-20 73.0 61.6 2.5 1 1 1 2 2 2 1 Amino acid permease Pyr_redox_2 PF07992.14 gi|307594212|ref|YP_003900529.1| - 5.6e-53 180.1 4.7 7.1e-53 179.7 4.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|307594212|ref|YP_003900529.1| - 5.6e-27 94.2 0.1 1.2e-26 93.1 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|307594212|ref|YP_003900529.1| - 2.3e-19 69.7 9.0 1.7e-18 66.9 1.7 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|307594212|ref|YP_003900529.1| - 1.5e-15 57.3 0.9 1.8e-14 53.7 0.6 1.7 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|307594212|ref|YP_003900529.1| - 1.3e-11 44.3 9.2 2.4e-08 33.5 0.1 3.3 2 1 1 3 3 3 3 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|307594212|ref|YP_003900529.1| - 5.2e-07 29.4 6.0 2.2e-05 24.0 0.1 3.3 3 0 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|307594212|ref|YP_003900529.1| - 4.1e-06 25.7 8.1 0.0026 16.5 0.5 3.6 4 0 0 4 4 4 2 HI0933-like protein Thi4 PF01946.17 gi|307594212|ref|YP_003900529.1| - 1.4e-05 24.4 6.2 0.0013 18.1 0.1 2.8 2 1 1 3 3 3 2 Thi4 family FAD_binding_2 PF00890.24 gi|307594212|ref|YP_003900529.1| - 2e-05 23.8 0.7 2e-05 23.8 0.7 3.0 4 0 0 4 4 4 1 FAD binding domain FAD_binding_3 PF01494.19 gi|307594212|ref|YP_003900529.1| - 6.9e-05 22.2 8.0 0.05 12.8 1.7 2.2 2 0 0 2 2 2 2 FAD binding domain K_oxygenase PF13434.6 gi|307594212|ref|YP_003900529.1| - 0.00079 18.7 0.2 0.0089 15.2 0.0 2.4 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|307594212|ref|YP_003900529.1| - 0.0012 18.5 17.4 0.17 11.4 0.1 3.4 2 1 1 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|307594212|ref|YP_003900529.1| - 0.003 17.7 6.6 0.1 12.8 2.4 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|307594212|ref|YP_003900529.1| - 0.0043 16.2 5.3 0.33 9.9 0.6 2.6 2 1 0 2 2 2 2 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|307594212|ref|YP_003900529.1| - 0.024 14.2 1.6 0.024 14.2 1.6 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|307594212|ref|YP_003900529.1| - 0.027 13.7 1.0 0.21 10.9 0.1 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|307594212|ref|YP_003900529.1| - 0.031 14.7 0.4 9.8 6.7 0.0 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding ThiF PF00899.21 gi|307594212|ref|YP_003900529.1| - 0.057 12.8 3.4 1.2 8.4 0.1 2.7 3 0 0 3 3 3 0 ThiF family 3HCDH_N PF02737.18 gi|307594212|ref|YP_003900529.1| - 2.3 8.1 8.6 0.16 11.8 0.3 2.5 3 0 0 3 3 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2175 PF09943.9 gi|307594213|ref|YP_003900530.1| - 5.7e-35 119.5 0.1 6.4e-35 119.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) DUF1126 PF06565.12 gi|307594213|ref|YP_003900530.1| - 0.013 15.3 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 DUF1126 PH-like domain AAA_5 PF07728.14 gi|307594214|ref|YP_003900531.1| - 1.5e-26 93.0 0.1 5.9e-26 91.1 0.0 2.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|307594214|ref|YP_003900531.1| - 1.2e-06 29.0 0.1 2.2e-05 24.9 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|307594214|ref|YP_003900531.1| - 3.3e-05 23.7 0.0 7.5e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF4363 PF14276.6 gi|307594214|ref|YP_003900531.1| - 0.00037 20.6 3.0 0.00043 20.4 1.3 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4363) IstB_IS21 PF01695.17 gi|307594214|ref|YP_003900531.1| - 0.00073 19.3 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|307594214|ref|YP_003900531.1| - 0.0011 19.4 0.0 0.0033 17.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_11 PF13086.6 gi|307594214|ref|YP_003900531.1| - 0.0099 15.7 0.1 0.045 13.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|307594214|ref|YP_003900531.1| - 0.018 14.6 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|307594214|ref|YP_003900531.1| - 0.019 14.0 0.0 0.043 12.9 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|307594214|ref|YP_003900531.1| - 0.028 14.1 0.0 0.088 12.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|307594214|ref|YP_003900531.1| - 0.037 13.4 0.0 0.087 12.2 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|307594214|ref|YP_003900531.1| - 0.042 13.8 0.0 0.099 12.6 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain NTPase_1 PF03266.15 gi|307594214|ref|YP_003900531.1| - 0.045 13.6 0.0 1.7 8.5 0.0 2.5 2 0 0 2 2 2 0 NTPase AAA_29 PF13555.6 gi|307594214|ref|YP_003900531.1| - 0.046 13.5 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ribonuc_L-PSP PF01042.21 gi|307594214|ref|YP_003900531.1| - 0.1 12.6 0.1 1.4 9.0 0.0 2.6 3 0 0 3 3 3 0 Endoribonuclease L-PSP RuvB_N PF05496.12 gi|307594214|ref|YP_003900531.1| - 0.11 12.3 0.3 0.41 10.4 0.0 2.2 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|307594214|ref|YP_003900531.1| - 0.14 12.4 3.3 1.1 9.5 0.2 3.1 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|307594214|ref|YP_003900531.1| - 0.17 12.2 0.2 1.6 9.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain Glycos_transf_2 PF00535.26 gi|307594216|ref|YP_003900533.1| - 4.6e-15 55.8 0.0 6.5e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|307594216|ref|YP_003900533.1| - 1.7e-11 43.9 0.0 3.2e-11 43.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 gi|307594216|ref|YP_003900533.1| - 1.6e-10 41.3 0.0 3.4e-10 40.2 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|307594216|ref|YP_003900533.1| - 0.056 14.0 0.0 0.11 13.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|307594216|ref|YP_003900533.1| - 0.1 12.5 10.0 0.24 11.3 10.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family group 2 NAD_binding_2 PF03446.15 gi|307594217|ref|YP_003900534.1| - 4.4e-38 130.9 0.2 6.1e-38 130.5 0.2 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|307594217|ref|YP_003900534.1| - 1.7e-27 96.1 0.0 2.7e-27 95.4 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Shikimate_DH PF01488.20 gi|307594217|ref|YP_003900534.1| - 1.1e-05 25.5 0.0 2.2e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|307594217|ref|YP_003900534.1| - 2.2e-05 23.9 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|307594217|ref|YP_003900534.1| - 5.9e-05 23.6 0.1 0.00019 21.9 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|307594217|ref|YP_003900534.1| - 0.00024 20.7 0.0 0.00042 19.9 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 gi|307594217|ref|YP_003900534.1| - 0.003 18.4 0.0 0.0059 17.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.6 gi|307594217|ref|YP_003900534.1| - 0.0033 17.8 0.3 0.65 10.5 0.1 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding MFS_1 PF07690.16 gi|307594218|ref|YP_003900535.1| - 1.2e-47 162.6 96.5 8.4e-39 133.5 60.2 3.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307594218|ref|YP_003900535.1| - 9.1e-09 34.7 25.3 8.8e-06 24.8 10.1 2.4 2 0 0 2 2 2 2 Sugar (and other) transporter PUCC PF03209.15 gi|307594218|ref|YP_003900535.1| - 6.4e-08 32.0 3.4 6.4e-08 32.0 3.4 3.3 2 2 0 3 3 3 1 PUCC protein MFS_3 PF05977.13 gi|307594218|ref|YP_003900535.1| - 0.0066 14.9 13.3 0.013 13.9 1.6 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 gi|307594218|ref|YP_003900535.1| - 2.2 6.5 16.6 2 6.6 0.2 3.6 2 2 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Raffinose_syn PF05691.12 gi|307594219|ref|YP_003900536.1| - 1.2e-41 142.4 0.3 5.5e-24 84.0 0.0 3.6 2 2 2 4 4 4 2 Raffinose synthase or seed imbibition protein Sip1 Melibiase_2 PF16499.5 gi|307594219|ref|YP_003900536.1| - 0.013 14.7 0.0 0.028 13.6 0.0 1.5 1 0 0 1 1 1 0 Alpha galactosidase A DUF3211 PF11485.8 gi|307594220|ref|YP_003900537.1| - 0.12 12.6 0.0 0.14 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3211) MS_channel PF00924.18 gi|307594222|ref|YP_003900539.1| - 6.4e-16 58.5 2.4 1e-15 57.8 1.7 1.7 1 1 0 1 1 1 1 Mechanosensitive ion channel Podoplanin PF05808.11 gi|307594222|ref|YP_003900539.1| - 1.2 9.2 4.5 2.6 8.1 4.5 1.6 1 0 0 1 1 1 0 Podoplanin AFOR_C PF01314.18 gi|307594223|ref|YP_003900540.1| - 4.6e-121 404.4 0.0 5.6e-121 404.1 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|307594223|ref|YP_003900540.1| - 2.3e-70 236.5 0.0 3.5e-70 235.9 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DSPc PF00782.20 gi|307594224|ref|YP_003900541.1| - 9.1e-19 67.6 0.0 1e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain PTPlike_phytase PF14566.6 gi|307594224|ref|YP_003900541.1| - 4.7e-06 26.8 0.0 6.5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase PF00102.27 gi|307594224|ref|YP_003900541.1| - 4.1e-05 23.3 0.0 6.9e-05 22.5 0.0 1.3 1 1 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|307594224|ref|YP_003900541.1| - 0.00015 21.5 0.0 0.00019 21.2 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) DUF442 PF04273.13 gi|307594224|ref|YP_003900541.1| - 0.03 14.4 0.0 0.054 13.6 0.0 1.4 1 0 0 1 1 1 0 Putative phosphatase (DUF442) Sugar_tr PF00083.24 gi|307594225|ref|YP_003900542.1| - 3.7e-16 59.0 36.4 4.6e-14 52.1 13.5 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|307594225|ref|YP_003900542.1| - 5.3e-12 45.3 53.1 5.3e-12 45.3 53.1 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily OATP PF03137.20 gi|307594225|ref|YP_003900542.1| - 0.005 15.2 2.6 0.005 15.2 2.6 1.6 2 0 0 2 2 2 1 Organic Anion Transporter Polypeptide (OATP) family RIO1 PF01163.22 gi|307594226|ref|YP_003900543.1| - 2e-46 158.0 0.0 2.7e-46 157.5 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|307594226|ref|YP_003900543.1| - 2.9e-23 81.9 0.1 5.3e-23 81.0 0.1 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|307594226|ref|YP_003900543.1| - 4.3e-09 36.7 0.8 0.0018 18.2 0.2 3.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|307594226|ref|YP_003900543.1| - 0.0033 16.8 0.0 0.29 10.4 0.1 2.2 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family HrcA_DNA-bdg PF03444.15 gi|307594226|ref|YP_003900543.1| - 0.021 14.5 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Pkinase_fungal PF17667.1 gi|307594226|ref|YP_003900543.1| - 0.022 13.6 0.0 0.029 13.2 0.0 1.2 1 0 0 1 1 1 0 Fungal protein kinase TrmB PF01978.19 gi|307594226|ref|YP_003900543.1| - 0.06 13.2 0.0 0.65 9.9 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|307594226|ref|YP_003900543.1| - 0.11 12.9 0.1 0.33 11.3 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator eIF-5_eIF-2B PF01873.17 gi|307594226|ref|YP_003900543.1| - 0.11 12.3 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Pkinase PF00069.25 gi|307594226|ref|YP_003900543.1| - 0.14 11.5 0.0 0.22 10.8 0.0 1.4 1 1 0 1 1 1 0 Protein kinase domain DUF460 PF04312.13 gi|307594227|ref|YP_003900544.1| - 2e-48 163.7 3.0 3.7e-48 162.8 1.3 2.4 3 0 0 3 3 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|307594227|ref|YP_003900544.1| - 0.00079 19.7 0.1 0.011 16.0 0.0 2.4 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor ADIP PF11559.8 gi|307594227|ref|YP_003900544.1| - 0.004 17.2 2.4 0.013 15.6 2.4 1.8 1 1 0 1 1 1 1 Afadin- and alpha -actinin-Binding Tropomyosin_1 PF12718.7 gi|307594227|ref|YP_003900544.1| - 0.014 15.6 11.2 0.52 10.5 0.1 2.4 1 1 0 2 2 2 0 Tropomyosin like AAA_13 PF13166.6 gi|307594227|ref|YP_003900544.1| - 0.019 13.7 7.2 0.028 13.1 7.2 1.1 1 0 0 1 1 1 0 AAA domain EAP30 PF04157.16 gi|307594227|ref|YP_003900544.1| - 0.032 13.5 0.2 1.5 8.1 0.0 3.0 2 1 0 2 2 2 0 EAP30/Vps36 family Prefoldin_2 PF01920.20 gi|307594227|ref|YP_003900544.1| - 0.035 14.1 6.7 3.8 7.5 2.8 3.0 1 1 0 2 2 2 0 Prefoldin subunit DUF1664 PF07889.12 gi|307594227|ref|YP_003900544.1| - 0.052 13.6 2.8 0.54 10.3 0.8 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF1640 PF07798.11 gi|307594227|ref|YP_003900544.1| - 0.057 13.5 5.7 0.12 12.4 5.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) DUF812 PF05667.11 gi|307594227|ref|YP_003900544.1| - 0.067 12.1 6.4 0.078 11.9 5.5 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Fzo_mitofusin PF04799.13 gi|307594227|ref|YP_003900544.1| - 0.071 12.7 4.6 0.085 12.4 2.3 2.2 1 1 1 2 2 2 0 fzo-like conserved region Phasin PF05597.11 gi|307594227|ref|YP_003900544.1| - 0.092 12.8 4.3 0.69 9.9 4.4 2.3 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Nbl1_Borealin_N PF10444.9 gi|307594227|ref|YP_003900544.1| - 0.18 11.5 11.1 2.1 8.0 0.7 4.2 3 1 0 3 3 3 0 Nbl1 / Borealin N terminal Cas_DxTHG PF09455.10 gi|307594227|ref|YP_003900544.1| - 0.19 11.3 3.6 0.47 10.0 3.6 1.7 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family DUF5082 PF16888.5 gi|307594227|ref|YP_003900544.1| - 0.47 10.7 5.0 0.84 9.9 0.9 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) V_ATPase_I PF01496.19 gi|307594227|ref|YP_003900544.1| - 0.65 7.8 2.3 0.96 7.3 2.3 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.8 gi|307594227|ref|YP_003900544.1| - 0.71 9.9 6.5 6.7 6.8 1.9 3.1 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF4404 PF14357.6 gi|307594227|ref|YP_003900544.1| - 0.75 10.5 2.7 8.5 7.1 0.4 2.9 3 0 0 3 3 2 0 Domain of unknown function (DUF4404) Spectrin PF00435.21 gi|307594227|ref|YP_003900544.1| - 0.76 10.3 4.7 3.1 8.3 2.5 2.4 2 0 0 2 2 2 0 Spectrin repeat Prefoldin_3 PF13758.6 gi|307594227|ref|YP_003900544.1| - 0.91 9.6 6.9 2 8.5 5.3 2.5 1 1 0 1 1 1 0 Prefoldin subunit TMF_TATA_bd PF12325.8 gi|307594227|ref|YP_003900544.1| - 1 9.6 11.9 5.6 7.2 0.1 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Fib_alpha PF08702.10 gi|307594227|ref|YP_003900544.1| - 1.5 9.0 9.3 0.29 11.3 4.7 2.1 2 1 1 3 3 2 0 Fibrinogen alpha/beta chain family COG5 PF10392.9 gi|307594227|ref|YP_003900544.1| - 1.7 8.9 6.6 1 9.5 1.3 3.0 2 1 2 4 4 3 0 Golgi transport complex subunit 5 Phage_Mu_Gam PF07352.12 gi|307594227|ref|YP_003900544.1| - 1.7 8.6 7.1 6 6.8 2.4 3.2 1 1 2 3 3 3 0 Bacteriophage Mu Gam like protein Cep57_MT_bd PF06657.13 gi|307594227|ref|YP_003900544.1| - 3.3 8.2 6.4 24 5.5 0.3 3.2 2 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 FlaC_arch PF05377.11 gi|307594227|ref|YP_003900544.1| - 5.2 7.5 8.8 13 6.2 0.4 3.7 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) DUF4200 PF13863.6 gi|307594227|ref|YP_003900544.1| - 5.4 7.4 14.9 1.7 9.0 3.2 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) TolA_bind_tri PF16331.5 gi|307594227|ref|YP_003900544.1| - 9.3 6.4 10.5 4 7.6 1.9 3.1 3 1 1 4 4 3 0 TolA binding protein trimerisation AdoMet_Synthase PF01941.19 gi|307594228|ref|YP_003900545.1| - 4.8e-174 578.8 2.8 5.5e-174 578.6 2.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.22 gi|307594229|ref|YP_003900546.1| - 4.3e-18 64.8 3.3 4.8e-18 64.6 3.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|307594229|ref|YP_003900546.1| - 9.9e-06 25.6 0.0 1.2e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF2642 PF10842.8 gi|307594229|ref|YP_003900546.1| - 0.0061 16.4 1.9 0.015 15.1 0.1 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF2642) RNA_pol_N PF01194.17 gi|307594230|ref|YP_003900547.1| - 7.2e-27 93.5 0.1 8.2e-27 93.3 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|307594230|ref|YP_003900547.1| - 0.0012 19.1 0.0 0.0018 18.5 0.0 1.3 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) HscB_4_cys PF18256.1 gi|307594230|ref|YP_003900547.1| - 0.0073 16.1 1.2 0.014 15.2 1.2 1.4 1 0 0 1 1 1 1 Co-chaperone HscB tetracysteine metal binding motif Ribosomal_S14 PF00253.21 gi|307594230|ref|YP_003900547.1| - 0.085 12.6 0.8 3.2 7.6 0.2 2.1 1 1 1 2 2 2 0 Ribosomal protein S14p/S29e Ribosomal_S9 PF00380.19 gi|307594231|ref|YP_003900548.1| - 3.1e-32 111.6 0.1 3.8e-32 111.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|307594232|ref|YP_003900549.1| - 2.1e-12 47.4 0.2 4.9e-10 39.7 0.2 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|307594233|ref|YP_003900550.1| - 4.2e-07 29.5 0.1 4.9e-07 29.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|307594233|ref|YP_003900550.1| - 2.7e-05 24.8 0.2 7.1e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PUA_3 PF17785.1 gi|307594233|ref|YP_003900550.1| - 0.046 13.5 0.1 0.078 12.8 0.1 1.4 1 0 0 1 1 1 0 PUA-like domain RNA_pol_A_bac PF01000.26 gi|307594234|ref|YP_003900551.1| - 1.6e-27 96.1 0.0 3.5e-27 95.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|307594234|ref|YP_003900551.1| - 7.6e-14 50.9 0.0 1.2e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_11 PF13247.6 gi|307594234|ref|YP_003900551.1| - 0.075 13.2 0.5 0.15 12.2 0.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF575 PF04746.12 gi|307594235|ref|YP_003900552.1| - 0.13 12.5 0.3 0.27 11.5 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF575) DUF3311 PF11755.8 gi|307594236|ref|YP_003900553.1| - 5.9e-11 42.1 12.7 8.4e-11 41.6 12.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4064 PF13273.6 gi|307594236|ref|YP_003900553.1| - 0.021 15.1 1.3 0.29 11.4 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) DUF2269 PF10027.9 gi|307594236|ref|YP_003900553.1| - 3.6 7.6 9.3 0.78 9.8 3.7 1.8 1 1 1 2 2 2 0 Predicted integral membrane protein (DUF2269) Metallophos_2 PF12850.7 gi|307594237|ref|YP_003900554.1| - 2.8e-20 73.2 0.0 3.5e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|307594237|ref|YP_003900554.1| - 9.3e-17 61.2 0.1 4.9e-13 49.0 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|307594237|ref|YP_003900554.1| - 6.8e-13 49.6 2.2 2.8e-11 44.3 2.2 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Pik1 PF11522.8 gi|307594237|ref|YP_003900554.1| - 0.033 14.1 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 Yeast phosphatidylinositol-4-OH kinase Pik1 YtzH PF14165.6 gi|307594239|ref|YP_003900556.1| - 0.075 13.4 0.0 0.18 12.2 0.0 1.6 1 0 0 1 1 1 0 YtzH-like protein EndIII_4Fe-2S PF10576.9 gi|307594239|ref|YP_003900556.1| - 0.43 11.0 1.6 0.73 10.3 1.6 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III adh_short_C2 PF13561.6 gi|307594240|ref|YP_003900557.1| - 3.1e-53 180.7 0.0 4.3e-53 180.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|307594240|ref|YP_003900557.1| - 1.4e-41 142.1 0.0 1.8e-41 141.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|307594240|ref|YP_003900557.1| - 5.8e-10 39.4 0.1 1.4e-09 38.1 0.0 1.6 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|307594240|ref|YP_003900557.1| - 3.9e-06 26.9 0.0 5.7e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|307594240|ref|YP_003900557.1| - 0.0006 19.7 0.2 0.001 19.0 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PALP PF00291.25 gi|307594240|ref|YP_003900557.1| - 0.019 14.4 0.5 0.032 13.7 0.2 1.4 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme Helicase_C_3 PF13625.6 gi|307594240|ref|YP_003900557.1| - 0.071 13.3 0.0 3.6 7.8 0.0 2.4 2 0 0 2 2 2 0 Helicase conserved C-terminal domain Epimerase PF01370.21 gi|307594240|ref|YP_003900557.1| - 0.12 11.9 0.1 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|307594240|ref|YP_003900557.1| - 0.16 11.5 1.5 0.57 9.7 0.7 2.1 2 1 1 3 3 3 0 NmrA-like family PAC2 PF09754.9 gi|307594241|ref|YP_003900558.1| - 2.6e-35 122.4 0.2 1.3e-34 120.1 0.2 1.8 1 1 0 1 1 1 1 PAC2 family LAGLIDADG_3 PF14528.6 gi|307594242|ref|YP_003900559.1| - 0.00013 22.2 1.7 0.1 12.9 0.1 3.9 4 0 0 4 4 4 1 LAGLIDADG-like domain Syntaxin_2 PF14523.6 gi|307594242|ref|YP_003900559.1| - 0.057 13.8 0.1 0.2 12.0 0.0 2.0 2 0 0 2 2 2 0 Syntaxin-like protein CK2S PF15011.6 gi|307594242|ref|YP_003900559.1| - 0.076 12.9 0.2 0.16 11.8 0.2 1.5 1 0 0 1 1 1 0 Casein Kinase 2 substrate DUF4811 PF16069.5 gi|307594242|ref|YP_003900559.1| - 0.098 12.5 0.3 0.18 11.7 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4811) DUF5382 PF17354.2 gi|307594242|ref|YP_003900559.1| - 0.13 11.1 0.1 0.19 10.5 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5382) LAGLIDADG_WhiA PF14527.6 gi|307594242|ref|YP_003900559.1| - 0.18 11.9 3.5 0.62 10.2 0.0 3.4 4 0 0 4 4 4 0 WhiA LAGLIDADG-like domain Hexapep PF00132.24 gi|307594243|ref|YP_003900560.1| - 3.2e-21 74.2 30.1 5.7e-10 38.5 1.8 4.9 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|307594243|ref|YP_003900560.1| - 1.2e-08 34.5 32.8 7.5e-05 22.4 2.1 4.8 3 2 2 6 6 6 4 Hexapeptide repeat of succinyl-transferase Macro PF01661.21 gi|307594243|ref|YP_003900560.1| - 0.096 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Macro domain DUF4954 PF16314.5 gi|307594243|ref|YP_003900560.1| - 2.4 6.2 6.0 1.6 6.8 1.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) Glycos_transf_1 PF00534.20 gi|307594244|ref|YP_003900561.1| - 2.1e-20 72.9 0.0 6.3e-20 71.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594244|ref|YP_003900561.1| - 1.3e-14 54.8 0.0 3.8e-14 53.3 0.0 1.7 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|307594244|ref|YP_003900561.1| - 1.8e-05 25.1 0.0 3.2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307594244|ref|YP_003900561.1| - 0.0003 20.8 0.1 0.27 11.2 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase Family 4 PGM_PMM_I PF02878.16 gi|307594245|ref|YP_003900562.1| - 3.2e-34 117.6 0.0 7.3e-34 116.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|307594245|ref|YP_003900562.1| - 9.2e-23 80.8 0.0 3.4e-22 79.0 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|307594245|ref|YP_003900562.1| - 1.3e-22 80.1 0.2 6.9e-22 77.8 0.1 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|307594245|ref|YP_003900562.1| - 1.5e-10 41.0 0.0 3.2e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Peptidase_M42 PF05343.14 gi|307594246|ref|YP_003900563.1| - 2.5e-101 338.6 0.0 2.9e-101 338.3 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|307594246|ref|YP_003900563.1| - 1e-09 38.4 0.1 1.9e-09 37.5 0.0 1.4 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|307594246|ref|YP_003900563.1| - 3.2e-07 30.2 0.0 8.3e-06 25.6 0.0 2.2 2 0 0 2 2 2 1 Peptidase family M28 SM-ATX PF14438.6 gi|307594246|ref|YP_003900563.1| - 0.14 12.3 0.4 0.41 10.8 0.1 1.8 2 0 0 2 2 2 0 Ataxin 2 SM domain AIRC PF00731.20 gi|307594246|ref|YP_003900563.1| - 0.15 11.6 0.1 0.54 9.8 0.0 2.0 2 0 0 2 2 2 0 AIR carboxylase Xan_ur_permease PF00860.20 gi|307594247|ref|YP_003900564.1| - 1e-27 96.9 47.8 1e-27 96.9 47.8 2.5 1 1 1 2 2 2 1 Permease family DUF5464 PF17552.2 gi|307594247|ref|YP_003900564.1| - 0.37 11.1 4.0 0.42 10.9 0.0 3.2 3 0 0 3 3 3 0 Family of unknown function (DUF5464) Peptidase_M1 PF01433.20 gi|307594248|ref|YP_003900565.1| - 3.6e-81 271.9 0.0 5.1e-81 271.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M1 domain ERAP1_C PF11838.8 gi|307594248|ref|YP_003900565.1| - 1.1e-28 100.7 0.0 2e-28 99.9 0.0 1.3 1 0 0 1 1 1 1 ERAP1-like C-terminal domain Peptidase_M1_N PF17900.1 gi|307594248|ref|YP_003900565.1| - 3.7e-23 82.7 0.0 1.7e-22 80.5 0.0 2.0 2 1 0 2 2 2 1 Peptidase M1 N-terminal domain Imm-NTF2 PF15655.6 gi|307594248|ref|YP_003900565.1| - 0.051 13.9 0.0 0.23 11.8 0.0 1.9 2 0 0 2 2 2 0 NTF2 fold immunity protein Aminopep PF10023.9 gi|307594248|ref|YP_003900565.1| - 0.084 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative aminopeptidase Peptidase_M48 PF01435.18 gi|307594248|ref|YP_003900565.1| - 0.15 11.8 0.2 0.91 9.3 0.0 2.2 2 1 1 3 3 3 0 Peptidase family M48 AAA_21 PF13304.6 gi|307594249|ref|YP_003900566.1| - 3.7e-23 82.8 0.1 3.4e-15 56.6 0.0 2.6 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|307594249|ref|YP_003900566.1| - 8.8e-23 81.6 0.3 9.5e-13 48.6 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF2813 PF11398.8 gi|307594249|ref|YP_003900566.1| - 7.3e-05 22.2 0.1 0.14 11.4 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) ATP-synt_C PF00137.21 gi|307594251|ref|YP_003900568.1| - 8.2e-16 58.1 18.3 8.2e-16 58.1 18.3 1.8 2 0 0 2 2 2 1 ATP synthase subunit C CrgA PF06781.12 gi|307594251|ref|YP_003900568.1| - 0.042 13.9 0.3 0.042 13.9 0.3 2.0 2 0 0 2 2 2 0 Cell division protein CrgA Peptidase_M20 PF01546.28 gi|307594252|ref|YP_003900569.1| - 1.4e-37 129.4 0.0 2.8e-37 128.4 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|307594252|ref|YP_003900569.1| - 1.3e-06 27.7 0.1 0.0035 16.4 0.1 3.1 3 0 0 3 3 3 3 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|307594252|ref|YP_003900569.1| - 3.1e-05 23.8 0.0 0.00013 21.7 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 ATPase PF06745.13 gi|307594253|ref|YP_003900570.1| - 3.1e-22 79.1 0.0 4.5e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|307594253|ref|YP_003900570.1| - 2.2e-06 26.6 0.7 3.6e-06 25.9 0.7 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein PAXNEB PF05625.11 gi|307594253|ref|YP_003900570.1| - 1.9e-05 24.0 0.1 0.037 13.2 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein AAA_22 PF13401.6 gi|307594253|ref|YP_003900570.1| - 0.00053 20.3 0.0 0.00089 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|307594253|ref|YP_003900570.1| - 0.00063 19.7 1.3 0.14 12.1 0.2 2.6 1 1 2 3 3 3 2 NACHT domain AAA_25 PF13481.6 gi|307594253|ref|YP_003900570.1| - 0.0008 19.0 0.0 0.0019 17.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307594253|ref|YP_003900570.1| - 0.00081 19.8 0.0 0.0012 19.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|307594253|ref|YP_003900570.1| - 0.00089 19.7 0.1 0.0027 18.1 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|307594253|ref|YP_003900570.1| - 0.0011 19.0 0.0 0.0019 18.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|307594253|ref|YP_003900570.1| - 0.0016 18.4 0.0 0.0035 17.3 0.0 1.6 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_35 PF14516.6 gi|307594253|ref|YP_003900570.1| - 0.013 14.3 0.0 0.022 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain CSTF2_hinge PF14327.6 gi|307594253|ref|YP_003900570.1| - 0.053 14.0 1.4 0.33 11.4 0.0 2.7 3 0 0 3 3 3 0 Hinge domain of cleavage stimulation factor subunit 2 AAA_5 PF07728.14 gi|307594253|ref|YP_003900570.1| - 0.056 13.4 0.0 0.19 11.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) GPHR_N PF12537.8 gi|307594253|ref|YP_003900570.1| - 0.13 12.4 0.0 22 5.2 0.0 2.3 2 0 0 2 2 2 0 The Golgi pH Regulator (GPHR) Family N-terminal DUF1871 PF08958.10 gi|307594253|ref|YP_003900570.1| - 0.17 12.3 0.5 2.2 8.7 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1871) TMEM100 PF16311.5 gi|307594255|ref|YP_003900572.1| - 0.16 11.6 4.3 0.15 11.7 2.9 1.6 1 1 1 2 2 2 0 Transmembrane protein 100 PGPGW PF09656.10 gi|307594255|ref|YP_003900572.1| - 3.6 7.2 9.9 0.14 11.7 0.5 2.4 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DUF1673 PF07895.11 gi|307594256|ref|YP_003900573.1| - 0.00056 19.7 5.5 0.00065 19.5 5.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1673) Phage_holin_3_6 PF07332.11 gi|307594256|ref|YP_003900573.1| - 0.072 13.1 3.1 0.092 12.8 3.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2628 PF10947.8 gi|307594256|ref|YP_003900573.1| - 1.4 9.3 6.5 2.1 8.8 6.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF2207 PF09972.9 gi|307594256|ref|YP_003900573.1| - 1.4 7.6 8.5 1.6 7.4 8.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4131 PF13567.6 gi|307594256|ref|YP_003900573.1| - 1.5 8.5 6.5 1.7 8.3 6.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4227 PF14004.6 gi|307594256|ref|YP_003900573.1| - 2.5 8.2 6.3 15 5.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) DUF2070 PF09843.9 gi|307594256|ref|YP_003900573.1| - 4.7 5.4 9.9 4.8 5.3 9.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TraB PF01963.17 gi|307594259|ref|YP_003900576.1| - 0.0027 17.6 0.4 0.059 13.3 0.1 2.1 2 0 0 2 2 2 2 TraB family UBA_5 PF16577.5 gi|307594261|ref|YP_003900578.1| - 0.15 12.2 0.0 0.32 11.2 0.0 1.6 1 1 0 1 1 1 0 UBA domain 7TM_GPCR_Srh PF10318.9 gi|307594264|ref|YP_003900581.1| - 0.00038 19.6 6.4 0.00038 19.6 6.4 2.0 2 0 0 2 2 2 1 Serpentine type 7TM GPCR chemoreceptor Srh SDH_sah PF01972.16 gi|307594264|ref|YP_003900581.1| - 0.025 13.6 0.2 0.025 13.6 0.2 1.9 2 0 0 2 2 2 0 Serine dehydrogenase proteinase DDE_Tnp_1_assoc PF13808.6 gi|307594264|ref|YP_003900581.1| - 0.39 10.8 3.5 0.91 9.6 0.1 2.9 3 0 0 3 3 3 0 DDE_Tnp_1-associated DHHC PF01529.20 gi|307594264|ref|YP_003900581.1| - 0.56 10.3 16.7 0.056 13.5 6.9 2.6 2 1 1 3 3 3 0 DHHC palmitoyltransferase UPF0182 PF03699.13 gi|307594264|ref|YP_003900581.1| - 0.56 8.3 5.6 0.68 8.0 5.6 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) Neurokinin_B PF03823.14 gi|307594264|ref|YP_003900581.1| - 0.62 10.1 0.0 0.62 10.1 0.0 2.9 3 0 0 3 3 3 0 Neurokinin B Ac76 PF05814.11 gi|307594264|ref|YP_003900581.1| - 2.4 8.2 16.5 3.1 7.9 2.8 3.2 3 0 0 3 3 3 0 Orf76 (Ac76) DNA_pol_B_exo1 PF03104.19 gi|307594266|ref|YP_003900583.1| - 0.0026 16.9 0.5 0.008 15.3 0.1 2.1 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|307594266|ref|YP_003900583.1| - 0.0029 17.6 0.0 0.02 14.9 0.0 2.1 1 1 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|307594266|ref|YP_003900583.1| - 0.064 12.9 0.0 0.18 11.5 0.0 1.9 1 1 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB ZipA_C PF04354.13 gi|307594266|ref|YP_003900583.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 ZipA, C-terminal FtsZ-binding domain HNH PF01844.23 gi|307594267|ref|YP_003900584.1| - 0.00082 19.5 0.7 0.00082 19.5 0.7 1.7 2 0 0 2 2 2 1 HNH endonuclease HHH_5 PF14520.6 gi|307594267|ref|YP_003900584.1| - 0.028 15.0 0.0 0.13 12.9 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF411 PF04214.13 gi|307594268|ref|YP_003900585.1| - 0.2 11.6 0.1 1.1 9.2 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function, DUF Methyltransf_11 PF08241.12 gi|307594269|ref|YP_003900586.1| - 1.3e-21 77.0 0.1 9.5e-20 71.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|307594269|ref|YP_003900586.1| - 2.6e-16 59.9 0.0 3.3e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307594269|ref|YP_003900586.1| - 5e-16 59.2 0.0 2e-15 57.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307594269|ref|YP_003900586.1| - 6.1e-12 45.6 0.0 1.5e-11 44.3 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|307594269|ref|YP_003900586.1| - 3e-11 43.9 0.0 1.8e-10 41.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|307594269|ref|YP_003900586.1| - 6e-10 38.9 0.0 2.3e-09 37.0 0.0 1.9 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|307594269|ref|YP_003900586.1| - 2.4e-06 27.3 0.0 3.8e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|307594269|ref|YP_003900586.1| - 5.3e-05 23.2 0.0 0.00014 21.8 0.0 1.6 2 0 0 2 2 2 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|307594269|ref|YP_003900586.1| - 0.0065 15.1 0.0 0.011 14.3 0.0 1.3 2 0 0 2 2 2 1 Putative S-adenosyl-L-methionine-dependent methyltransferase NodS PF05401.11 gi|307594269|ref|YP_003900586.1| - 0.012 15.2 0.0 0.028 14.0 0.0 1.6 1 1 0 1 1 1 0 Nodulation protein S (NodS) DUF4350 PF14258.6 gi|307594269|ref|YP_003900586.1| - 0.019 15.4 0.0 0.05 14.0 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) Methyltransf_9 PF08003.11 gi|307594269|ref|YP_003900586.1| - 0.024 13.6 0.0 0.056 12.4 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) NNMT_PNMT_TEMT PF01234.17 gi|307594269|ref|YP_003900586.1| - 0.061 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family MTS PF05175.14 gi|307594269|ref|YP_003900586.1| - 0.073 12.6 0.0 0.21 11.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|307594269|ref|YP_003900586.1| - 0.077 14.0 0.0 0.24 12.4 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain DREV PF05219.12 gi|307594269|ref|YP_003900586.1| - 0.15 11.2 0.0 0.2 10.7 0.0 1.4 1 1 0 1 1 1 0 DREV methyltransferase Abhydrolase_7 PF12715.7 gi|307594273|ref|YP_003900590.1| - 0.035 13.3 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Abhydrolase family DUF1947 PF09183.10 gi|307594275|ref|YP_003900592.1| - 0.057 13.7 0.6 0.27 11.6 0.6 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) SAC3 PF12209.8 gi|307594276|ref|YP_003900593.1| - 0.13 12.5 0.6 0.47 10.7 0.0 2.2 3 0 0 3 3 3 0 Leucine permease transcriptional regulator helical domain DEAD PF00270.29 gi|307594277|ref|YP_003900594.1| - 0.0032 17.2 0.0 2.2 8.0 0.0 3.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|307594277|ref|YP_003900594.1| - 0.0058 16.6 0.0 0.2 11.7 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit pRN1_helical PF13010.6 gi|307594278|ref|YP_003900595.1| - 0.021 14.8 0.1 0.041 13.9 0.1 1.5 1 0 0 1 1 1 0 Primase helical domain Chal_sti_synt_C PF02797.15 gi|307594278|ref|YP_003900595.1| - 0.034 14.2 0.0 0.044 13.8 0.0 1.2 1 0 0 1 1 1 0 Chalcone and stilbene synthases, C-terminal domain CARD_2 PF16739.5 gi|307594278|ref|YP_003900595.1| - 0.063 13.3 0.1 0.37 10.8 0.0 2.1 2 0 0 2 2 2 0 Caspase recruitment domain TBCC_N PF16752.5 gi|307594278|ref|YP_003900595.1| - 0.11 12.9 0.1 0.23 11.9 0.1 1.6 1 1 0 1 1 1 0 Tubulin-specific chaperone C N-terminal domain Apolipoprotein PF01442.18 gi|307594278|ref|YP_003900595.1| - 0.17 11.8 3.9 0.5 10.2 3.9 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Spc29 PF17082.5 gi|307594278|ref|YP_003900595.1| - 0.18 11.7 0.7 0.22 11.3 0.7 1.2 1 0 0 1 1 1 0 Spindle Pole Component 29 DUF2207 PF09972.9 gi|307594278|ref|YP_003900595.1| - 0.18 10.5 0.0 0.21 10.3 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) YtxH PF12732.7 gi|307594278|ref|YP_003900595.1| - 0.24 12.0 3.6 1.2 9.7 0.0 2.9 2 1 0 2 2 2 0 YtxH-like protein HSBP1 PF06825.12 gi|307594278|ref|YP_003900595.1| - 0.38 10.6 2.6 0.66 9.9 0.2 2.5 3 0 0 3 3 3 0 Heat shock factor binding protein 1 DUF3772 PF12607.8 gi|307594278|ref|YP_003900595.1| - 3.5 7.4 6.5 11 5.8 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3772) TrwB_AAD_bind PF10412.9 gi|307594281|ref|YP_003900598.1| - 2.2e-05 23.5 0.0 6.4e-05 22.0 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|307594281|ref|YP_003900598.1| - 0.00027 21.2 0.5 0.076 13.3 0.1 2.8 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|307594281|ref|YP_003900598.1| - 0.00051 20.5 0.0 0.0033 17.8 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|307594281|ref|YP_003900598.1| - 0.0013 18.3 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_10 PF12846.7 gi|307594281|ref|YP_003900598.1| - 0.0017 17.3 0.0 0.1 11.5 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain DUF853 PF05872.12 gi|307594281|ref|YP_003900598.1| - 0.0064 15.1 0.0 0.8 8.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|307594281|ref|YP_003900598.1| - 0.011 15.9 0.0 0.021 14.9 0.0 1.5 1 1 0 1 1 1 0 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|307594281|ref|YP_003900598.1| - 0.05 13.0 0.0 0.72 9.2 0.0 2.3 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_29 PF13555.6 gi|307594281|ref|YP_003900598.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|307594281|ref|YP_003900598.1| - 0.088 13.2 0.2 1.2 9.5 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|307594281|ref|YP_003900598.1| - 0.091 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|307594281|ref|YP_003900598.1| - 0.14 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|307594281|ref|YP_003900598.1| - 0.15 12.0 0.0 0.46 10.4 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|307594281|ref|YP_003900598.1| - 0.17 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain HalX PF08663.10 gi|307594283|ref|YP_003900600.1| - 0.094 13.0 3.0 3.3 8.1 0.2 3.6 3 1 1 4 4 4 0 HalX domain AAA_lid_4 PF17864.1 gi|307594283|ref|YP_003900600.1| - 0.45 10.3 2.1 20 5.0 0.0 2.6 2 0 0 2 2 2 0 RuvB AAA lid domain DUF87 PF01935.17 gi|307594284|ref|YP_003900601.1| - 7.5e-16 58.9 0.0 1.2e-15 58.2 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|307594284|ref|YP_003900601.1| - 4.8e-07 29.0 0.1 0.0001 21.4 0.0 2.4 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|307594284|ref|YP_003900601.1| - 1.3e-06 27.6 0.0 0.00021 20.4 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|307594284|ref|YP_003900601.1| - 3.6e-06 27.3 0.1 0.0064 16.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|307594284|ref|YP_003900601.1| - 2.4e-05 23.8 0.0 4.8e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF853 PF05872.12 gi|307594284|ref|YP_003900601.1| - 0.00055 18.7 0.0 0.058 12.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_16 PF13191.6 gi|307594284|ref|YP_003900601.1| - 0.0015 18.9 0.0 0.0037 17.7 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain DEAD PF00270.29 gi|307594284|ref|YP_003900601.1| - 0.0057 16.4 0.0 0.097 12.4 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|307594284|ref|YP_003900601.1| - 0.0084 16.1 0.0 0.021 14.8 0.0 1.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|307594284|ref|YP_003900601.1| - 0.023 15.0 0.1 0.076 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|307594284|ref|YP_003900601.1| - 0.025 14.1 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|307594284|ref|YP_003900601.1| - 0.027 13.5 0.0 0.049 12.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|307594284|ref|YP_003900601.1| - 0.043 13.8 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|307594284|ref|YP_003900601.1| - 0.062 13.0 0.1 16 5.2 0.0 2.9 3 0 0 3 3 3 0 AAA domain SRP54 PF00448.22 gi|307594284|ref|YP_003900601.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|307594284|ref|YP_003900601.1| - 0.1 13.1 0.1 0.43 11.0 0.0 2.1 3 0 0 3 3 1 0 ATPase family associated with various cellular activities (AAA) T4SS-DNA_transf PF02534.14 gi|307594284|ref|YP_003900601.1| - 0.2 10.4 0.0 0.59 8.9 0.0 1.6 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer TLP1_add_C PF18313.1 gi|307594286|ref|YP_003900603.1| - 0.034 14.1 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Thiolase-like protein type 1 additional C-terminal domain SpoV PF08183.11 gi|307594289|ref|YP_003900606.1| - 0.24 11.4 1.1 26 4.8 1.2 2.7 3 0 0 3 3 3 0 Stage V sporulation protein family CbiA PF01656.23 gi|307594290|ref|YP_003900607.1| - 4.4e-10 39.7 0.0 5.5e-10 39.4 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|307594290|ref|YP_003900607.1| - 2.4e-07 30.8 0.1 5.1e-07 29.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|307594290|ref|YP_003900607.1| - 2.6e-05 23.8 0.0 5.6e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|307594290|ref|YP_003900607.1| - 0.00012 21.6 0.1 0.00021 20.8 0.1 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|307594290|ref|YP_003900607.1| - 0.0014 17.8 0.3 0.0037 16.5 0.2 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|307594290|ref|YP_003900607.1| - 0.042 13.1 0.0 0.07 12.4 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ AAA_25 PF13481.6 gi|307594290|ref|YP_003900607.1| - 0.092 12.3 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Fer4_NifH PF00142.18 gi|307594290|ref|YP_003900607.1| - 0.13 11.6 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RNA_helicase PF00910.22 gi|307594290|ref|YP_003900607.1| - 0.17 12.3 0.1 0.51 10.8 0.0 1.9 2 0 0 2 2 2 0 RNA helicase T2SSE PF00437.20 gi|307594291|ref|YP_003900608.1| - 2e-23 82.8 0.1 6.6e-23 81.1 0.1 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|307594291|ref|YP_003900608.1| - 0.0026 17.5 0.1 0.0059 16.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|307594291|ref|YP_003900608.1| - 0.0073 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|307594291|ref|YP_003900608.1| - 0.0075 16.8 0.0 0.016 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|307594291|ref|YP_003900608.1| - 0.011 16.3 0.0 0.04 14.4 0.0 2.0 3 0 0 3 3 1 0 AAA domain AAA_16 PF13191.6 gi|307594291|ref|YP_003900608.1| - 0.014 15.7 0.0 0.026 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|307594291|ref|YP_003900608.1| - 0.024 15.1 0.0 0.047 14.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|307594291|ref|YP_003900608.1| - 0.032 13.8 0.0 0.072 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region DEAD PF00270.29 gi|307594291|ref|YP_003900608.1| - 0.042 13.6 0.0 0.41 10.4 0.0 2.3 3 0 0 3 3 3 0 DEAD/DEAH box helicase cobW PF02492.19 gi|307594291|ref|YP_003900608.1| - 0.078 12.6 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|307594291|ref|YP_003900608.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RNA12 PF10443.9 gi|307594291|ref|YP_003900608.1| - 0.15 10.8 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein DUF3592 PF12158.8 gi|307594293|ref|YP_003900610.1| - 0.013 15.5 1.5 0.019 15.0 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3592) Arch_flagellin PF01917.16 gi|307594294|ref|YP_003900611.1| - 0.037 14.2 1.6 2.7 8.1 1.7 2.3 2 0 0 2 2 2 0 Archaebacterial flagellin DUF613 PF04764.12 gi|307594294|ref|YP_003900611.1| - 0.13 12.4 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF613) OppC_N PF12911.7 gi|307594297|ref|YP_003900614.1| - 0.04 13.9 1.0 0.04 13.9 1.0 2.6 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Rad51 PF08423.11 gi|307594299|ref|YP_003900616.1| - 2.1e-36 125.5 0.0 2.6e-36 125.2 0.0 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|307594299|ref|YP_003900616.1| - 2.8e-16 59.6 0.0 4.3e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|307594299|ref|YP_003900616.1| - 5.2e-08 32.7 0.1 7.4e-08 32.2 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|307594299|ref|YP_003900616.1| - 0.00018 21.1 0.1 0.00038 20.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|307594299|ref|YP_003900616.1| - 0.0011 18.3 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|307594299|ref|YP_003900616.1| - 0.0033 17.2 0.0 0.0059 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|307594299|ref|YP_003900616.1| - 0.0092 16.4 0.0 0.027 14.9 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SAM_2 PF07647.17 gi|307594299|ref|YP_003900616.1| - 0.035 14.2 0.2 0.12 12.5 0.1 1.9 2 0 0 2 2 2 0 SAM domain (Sterile alpha motif) ApbA_C PF08546.11 gi|307594300|ref|YP_003900617.1| - 0.13 12.5 0.2 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal RHH_1 PF01402.21 gi|307594303|ref|YP_003900620.1| - 3.1e-05 23.7 0.8 6.9e-05 22.6 0.2 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family VAPB_antitox PF02697.14 gi|307594303|ref|YP_003900620.1| - 0.0034 18.1 0.1 0.005 17.6 0.1 1.5 1 1 0 1 1 1 1 Putative antitoxin DUF2634 PF10934.8 gi|307594303|ref|YP_003900620.1| - 0.09 12.9 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2634) TetR_C_11 PF16859.5 gi|307594303|ref|YP_003900620.1| - 0.12 12.6 0.0 0.27 11.5 0.0 1.5 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain SWIM PF04434.17 gi|307594304|ref|YP_003900621.1| - 0.18 11.5 0.7 0.48 10.1 0.7 1.7 1 1 0 1 1 1 0 SWIM zinc finger DUF2061 PF09834.9 gi|307594306|ref|YP_003900623.1| - 3.6 8.2 11.1 0.79 10.3 2.4 3.1 2 1 1 3 3 3 0 Predicted membrane protein (DUF2061) AAA_5 PF07728.14 gi|307594307|ref|YP_003900624.1| - 2.3e-08 34.1 0.0 0.027 14.4 0.0 3.4 2 1 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|307594307|ref|YP_003900624.1| - 0.00012 21.3 0.0 0.0011 18.1 0.0 2.2 1 1 0 1 1 1 1 MCM P-loop domain AAA_19 PF13245.6 gi|307594307|ref|YP_003900624.1| - 0.0014 19.0 0.0 0.0033 17.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|307594307|ref|YP_003900624.1| - 0.0015 18.3 0.1 0.0031 17.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|307594307|ref|YP_003900624.1| - 0.002 18.6 0.0 0.004 17.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA PF00004.29 gi|307594307|ref|YP_003900624.1| - 0.0041 17.6 0.1 0.012 16.0 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|307594307|ref|YP_003900624.1| - 0.0045 16.4 0.1 0.042 13.2 0.1 2.4 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|307594307|ref|YP_003900624.1| - 0.011 16.1 0.2 0.054 13.9 0.2 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|307594307|ref|YP_003900624.1| - 0.014 15.1 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|307594307|ref|YP_003900624.1| - 0.018 15.1 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|307594307|ref|YP_003900624.1| - 0.033 14.4 0.1 0.1 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|307594307|ref|YP_003900624.1| - 0.038 13.9 0.0 9.9 6.0 0.0 2.2 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|307594307|ref|YP_003900624.1| - 0.049 13.4 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|307594307|ref|YP_003900624.1| - 0.15 11.8 0.0 0.38 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain Sld5 PF05916.11 gi|307594308|ref|YP_003900625.1| - 0.069 13.6 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 GINS complex protein TSNAXIP1_N PF15739.5 gi|307594311|ref|YP_003900628.1| - 0.12 12.8 0.1 0.25 11.8 0.1 1.5 1 0 0 1 1 1 0 Translin-associated factor X-interacting N-terminus DUF87 PF01935.17 gi|307594313|ref|YP_003900630.1| - 6e-08 33.0 0.0 4.3e-07 30.3 0.1 2.0 2 0 0 2 2 2 1 Helicase HerA, central domain AAA PF00004.29 gi|307594313|ref|YP_003900630.1| - 7.8e-08 32.8 0.1 0.00012 22.5 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF853 PF05872.12 gi|307594313|ref|YP_003900630.1| - 5.1e-07 28.7 0.0 0.0044 15.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|307594313|ref|YP_003900630.1| - 2.1e-06 27.3 0.1 1.8e-05 24.2 0.1 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|307594313|ref|YP_003900630.1| - 8.8e-05 22.8 0.0 0.036 14.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.9 gi|307594313|ref|YP_003900630.1| - 0.00012 21.1 0.0 0.00019 20.5 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 gi|307594313|ref|YP_003900630.1| - 0.0028 16.7 0.0 0.0054 15.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.15 gi|307594313|ref|YP_003900630.1| - 0.0046 17.0 0.0 0.46 10.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Zot PF05707.12 gi|307594313|ref|YP_003900630.1| - 0.011 15.3 0.0 0.038 13.6 0.0 1.8 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF2075 PF09848.9 gi|307594313|ref|YP_003900630.1| - 0.015 14.6 0.0 0.48 9.6 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|307594313|ref|YP_003900630.1| - 0.017 14.7 0.0 0.35 10.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|307594313|ref|YP_003900630.1| - 0.027 14.4 0.0 0.067 13.1 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 gi|307594313|ref|YP_003900630.1| - 0.032 14.6 0.0 0.27 11.6 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 gi|307594313|ref|YP_003900630.1| - 0.035 13.6 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DEAD PF00270.29 gi|307594313|ref|YP_003900630.1| - 0.061 13.1 0.0 2 8.1 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_14 PF13173.6 gi|307594313|ref|YP_003900630.1| - 0.074 13.1 0.0 2.5 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 gi|307594313|ref|YP_003900630.1| - 0.081 12.4 0.2 0.14 11.6 0.2 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_10 PF12846.7 gi|307594313|ref|YP_003900630.1| - 0.12 11.2 0.1 14 4.5 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain SRP54 PF00448.22 gi|307594313|ref|YP_003900630.1| - 0.21 11.2 0.1 0.33 10.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain T3SS_ExsE PF18286.1 gi|307594314|ref|YP_003900631.1| - 0.0036 17.2 0.0 0.011 15.7 0.0 1.7 2 0 0 2 2 2 1 Type III secretion system ExsE RPA PF10134.9 gi|307594314|ref|YP_003900631.1| - 0.031 13.8 0.0 0.034 13.6 0.0 1.1 1 0 0 1 1 1 0 Replication initiator protein A NurA PF09376.10 gi|307594314|ref|YP_003900631.1| - 0.032 13.9 0.0 0.039 13.7 0.0 1.1 1 0 0 1 1 1 0 NurA domain DUF4560 PF15118.6 gi|307594314|ref|YP_003900631.1| - 0.078 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4560) NurA PF09376.10 gi|307594315|ref|YP_003900632.1| - 0.0039 16.9 0.0 0.0072 16.0 0.0 1.5 1 1 0 1 1 1 1 NurA domain HTH_45 PF14947.6 gi|307594318|ref|YP_003900635.1| - 3.3e-06 27.0 0.0 5.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix AbiEi_4 PF13338.6 gi|307594318|ref|YP_003900635.1| - 2.4e-05 24.4 0.1 0.00014 22.0 0.1 2.3 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin MarR_2 PF12802.7 gi|307594318|ref|YP_003900635.1| - 0.00023 21.0 0.0 0.0007 19.4 0.0 1.7 2 0 0 2 2 2 1 MarR family Mrr_N PF14338.6 gi|307594318|ref|YP_003900635.1| - 0.00054 20.0 0.0 0.0014 18.7 0.0 1.7 2 0 0 2 2 2 1 Mrr N-terminal domain HTH_5 PF01022.20 gi|307594318|ref|YP_003900635.1| - 0.0012 18.7 0.2 0.0069 16.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|307594318|ref|YP_003900635.1| - 0.0026 17.6 0.0 0.011 15.7 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|307594318|ref|YP_003900635.1| - 0.0027 17.2 0.0 0.0061 16.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|307594318|ref|YP_003900635.1| - 0.0059 17.1 0.0 0.016 15.7 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|307594318|ref|YP_003900635.1| - 0.0061 16.5 0.1 0.014 15.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|307594318|ref|YP_003900635.1| - 0.0093 15.7 0.0 0.021 14.6 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|307594318|ref|YP_003900635.1| - 0.024 14.6 0.0 1 9.4 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|307594318|ref|YP_003900635.1| - 0.036 14.0 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FeoC PF09012.10 gi|307594318|ref|YP_003900635.1| - 0.065 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF1495 PF07381.11 gi|307594318|ref|YP_003900635.1| - 0.073 12.9 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.7 gi|307594321|ref|YP_003900638.1| - 0.001 18.9 0.0 0.0043 16.9 0.0 2.0 1 1 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|307594321|ref|YP_003900638.1| - 0.0086 16.4 0.0 0.023 15.0 0.0 1.7 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 gi|307594321|ref|YP_003900638.1| - 0.032 14.2 0.0 0.11 12.4 0.0 2.0 1 0 0 1 1 1 0 MarR family DUF1803 PF08820.10 gi|307594321|ref|YP_003900638.1| - 0.051 13.6 0.8 0.2 11.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1803) IlvC PF01450.19 gi|307594323|ref|YP_003900640.1| - 0.0035 17.6 0.3 0.58 10.4 0.0 2.7 1 1 1 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain AAA PF00004.29 gi|307594323|ref|YP_003900640.1| - 0.014 15.8 0.1 0.46 10.9 0.0 3.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) IFT57 PF10498.9 gi|307594323|ref|YP_003900640.1| - 0.03 13.3 11.0 0.038 13.0 1.2 2.7 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 THF_DHG_CYH PF00763.23 gi|307594323|ref|YP_003900640.1| - 0.031 14.5 0.0 0.18 12.1 0.0 2.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain cobW PF02492.19 gi|307594323|ref|YP_003900640.1| - 0.037 13.6 0.0 0.093 12.3 0.0 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|307594323|ref|YP_003900640.1| - 0.072 13.4 1.4 2.8 8.2 0.2 3.8 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|307594323|ref|YP_003900640.1| - 0.097 13.0 0.0 0.58 10.5 0.0 2.3 1 0 0 1 1 1 0 AAA ATPase domain MutS_III PF05192.18 gi|307594323|ref|YP_003900640.1| - 0.11 12.7 10.2 11 6.2 5.9 4.2 3 2 0 3 3 3 0 MutS domain III NACHT PF05729.12 gi|307594323|ref|YP_003900640.1| - 0.12 12.3 0.0 0.43 10.5 0.0 2.0 1 0 0 1 1 1 0 NACHT domain PCRF PF03462.18 gi|307594323|ref|YP_003900640.1| - 0.72 9.7 7.1 18 5.1 0.2 4.2 3 1 1 4 4 4 0 PCRF domain DUF948 PF06103.11 gi|307594323|ref|YP_003900640.1| - 0.96 9.7 7.9 20 5.5 0.3 4.5 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|307594323|ref|YP_003900640.1| - 0.98 9.9 17.4 3.7 8.1 0.6 5.3 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Allexi_40kDa PF05549.11 gi|307594323|ref|YP_003900640.1| - 7.2 6.0 8.0 2.9 7.4 0.3 3.2 3 0 0 3 3 3 0 Allexivirus 40kDa protein Syntaxin-6_N PF09177.11 gi|307594324|ref|YP_003900641.1| - 0.0043 17.6 3.6 5.1 7.7 0.1 3.8 2 1 1 3 3 3 1 Syntaxin 6, N-terminal CREPT PF16566.5 gi|307594324|ref|YP_003900641.1| - 0.076 13.2 9.6 1.4 9.0 2.2 3.0 3 0 0 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour ApoLp-III PF07464.11 gi|307594324|ref|YP_003900641.1| - 0.082 13.0 9.8 0.29 11.2 2.0 3.8 4 1 0 4 4 4 0 Apolipophorin-III precursor (apoLp-III) UME PF08064.13 gi|307594324|ref|YP_003900641.1| - 0.1 12.5 1.9 6.6 6.7 0.1 3.6 4 0 0 4 4 3 0 UME (NUC010) domain PX PF00787.24 gi|307594324|ref|YP_003900641.1| - 0.1 12.6 0.9 3.9 7.5 0.1 2.6 2 1 1 3 3 3 0 PX domain RRF PF01765.19 gi|307594324|ref|YP_003900641.1| - 0.11 12.5 4.0 0.12 12.3 0.3 2.9 3 1 0 3 3 3 0 Ribosome recycling factor Cucumopine_C PF18631.1 gi|307594324|ref|YP_003900641.1| - 0.13 12.2 2.0 0.99 9.3 0.1 3.1 4 0 0 4 4 4 0 Cucumopine synthase C-terminal helical bundle domain DASH_Dad1 PF08649.10 gi|307594324|ref|YP_003900641.1| - 0.16 12.2 19.0 0.73 10.1 0.4 6.1 5 2 0 6 6 6 0 DASH complex subunit Dad1 IF-2B PF01008.17 gi|307594324|ref|YP_003900641.1| - 0.24 10.6 2.0 1.4 8.1 1.1 2.3 1 1 1 2 2 2 0 Initiation factor 2 subunit family GLE1 PF07817.13 gi|307594324|ref|YP_003900641.1| - 0.36 10.0 4.0 4.6 6.4 0.3 2.3 2 0 0 2 2 2 0 GLE1-like protein Occludin_ELL PF07303.13 gi|307594324|ref|YP_003900641.1| - 0.36 11.6 8.5 13 6.6 2.2 3.7 3 1 1 4 4 4 0 Occludin homology domain SLATT_4 PF18186.1 gi|307594324|ref|YP_003900641.1| - 0.41 10.3 3.6 0.23 11.1 0.5 2.1 2 1 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 4 BLOC1_2 PF10046.9 gi|307594324|ref|YP_003900641.1| - 0.41 11.0 13.8 0.11 12.8 1.8 4.7 5 1 0 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|307594324|ref|YP_003900641.1| - 0.42 10.6 6.2 1.9 8.5 0.1 3.2 3 0 0 3 3 3 0 Laminin Domain II DUF4168 PF13767.6 gi|307594324|ref|YP_003900641.1| - 0.71 11.1 3.5 1.6 9.9 0.8 2.9 3 1 0 3 3 1 0 Domain of unknown function (DUF4168) H-kinase_dim PF02895.14 gi|307594324|ref|YP_003900641.1| - 0.75 10.2 3.3 1.4e+02 2.9 2.5 4.1 2 2 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain SKA2 PF16740.5 gi|307594324|ref|YP_003900641.1| - 0.97 9.2 8.2 1.5 8.6 0.4 3.8 3 1 1 4 4 4 0 Spindle and kinetochore-associated protein 2 DUF4795 PF16043.5 gi|307594324|ref|YP_003900641.1| - 0.97 9.0 13.4 0.96 9.0 1.5 3.4 1 1 1 3 3 3 0 Domain of unknown function (DUF4795) 4HB_MCP_1 PF12729.7 gi|307594324|ref|YP_003900641.1| - 1.6 8.3 13.1 0.12 11.9 2.8 3.3 4 0 0 4 4 3 0 Four helix bundle sensory module for signal transduction WXG100 PF06013.12 gi|307594324|ref|YP_003900641.1| - 2.2 8.6 4.1 39 4.6 0.1 4.0 2 1 0 2 2 2 0 Proteins of 100 residues with WXG APG17 PF04108.12 gi|307594324|ref|YP_003900641.1| - 2.6 7.1 11.7 4.1 6.4 2.1 2.8 1 1 0 2 2 2 0 Autophagy protein Apg17 MutS_III PF05192.18 gi|307594324|ref|YP_003900641.1| - 2.6 8.2 5.8 79 3.4 5.8 2.5 1 1 0 1 1 1 0 MutS domain III DUF4806 PF16064.5 gi|307594324|ref|YP_003900641.1| - 3.5 8.0 6.7 35 4.8 0.3 3.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4806) Casc1_N PF15927.5 gi|307594324|ref|YP_003900641.1| - 4.2 7.0 11.4 5.4 6.7 0.8 3.3 2 2 1 3 3 3 0 Cancer susceptibility candidate 1 N-terminus Mad3_BUB1_I PF08311.12 gi|307594324|ref|YP_003900641.1| - 4.5 7.3 6.9 1.1 9.3 0.1 3.1 4 0 0 4 4 4 0 Mad3/BUB1 homology region 1 Abi_C PF14355.6 gi|307594324|ref|YP_003900641.1| - 9.5 6.4 10.8 50 4.1 0.5 5.5 6 0 0 6 6 6 0 Abortive infection C-terminus DEAD PF00270.29 gi|307594325|ref|YP_003900642.1| - 3.2e-14 53.1 0.0 1.4e-09 38.0 0.0 2.6 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|307594325|ref|YP_003900642.1| - 3.5e-07 30.6 0.1 1.2e-06 28.8 0.1 2.0 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|307594325|ref|YP_003900642.1| - 3.4e-05 23.9 0.0 0.023 14.7 0.0 2.6 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Phage_int_SAM_5 PF13102.6 gi|307594325|ref|YP_003900642.1| - 0.028 14.7 0.1 0.16 12.3 0.1 2.3 1 0 0 1 1 1 0 Phage integrase SAM-like domain DUF1998 PF09369.10 gi|307594326|ref|YP_003900643.1| - 0.0079 16.9 2.0 0.099 13.4 0.0 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF1998) Baculo_p24 PF05073.12 gi|307594326|ref|YP_003900643.1| - 0.021 14.6 1.5 0.82 9.4 0.8 2.8 2 0 0 2 2 2 0 Baculovirus P24 capsid protein AGOG PF09171.10 gi|307594326|ref|YP_003900643.1| - 0.73 9.1 5.3 1.4 8.2 0.0 3.3 4 0 0 4 4 4 0 N-glycosylase/DNA lyase PLDc_2 PF13091.6 gi|307594327|ref|YP_003900644.1| - 2.8e-10 40.2 0.2 8.3e-10 38.7 0.2 1.7 1 1 0 1 1 1 1 PLD-like domain RE_NgoFVII PF09565.10 gi|307594327|ref|YP_003900644.1| - 0.0049 16.2 0.0 0.0076 15.6 0.0 1.2 1 0 0 1 1 1 1 NgoFVII restriction endonuclease PLDc PF00614.22 gi|307594327|ref|YP_003900644.1| - 0.01 16.0 0.1 0.024 14.8 0.1 1.7 1 0 0 1 1 1 1 Phospholipase D Active site motif Vut_1 PF02592.15 gi|307594328|ref|YP_003900645.1| - 1e-05 25.9 0.1 1.1e-05 25.8 0.1 1.1 1 0 0 1 1 1 1 Putative vitamin uptake transporter Vut_1 PF02592.15 gi|307594329|ref|YP_003900646.1| - 3.8e-10 40.3 4.4 3.8e-10 40.3 4.4 2.0 2 1 0 2 2 2 1 Putative vitamin uptake transporter TGT PF01702.18 gi|307594330|ref|YP_003900647.1| - 4.6e-05 22.7 0.0 0.00014 21.2 0.0 1.8 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase FeoB_Cyto PF17910.1 gi|307594330|ref|YP_003900647.1| - 0.1 13.1 0.0 13 6.4 0.0 3.1 4 0 0 4 4 4 0 FeoB cytosolic helical domain HTH_45 PF14947.6 gi|307594331|ref|YP_003900648.1| - 0.0038 17.2 0.0 0.011 15.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_assoc_C PF09821.9 gi|307594331|ref|YP_003900648.1| - 0.019 15.5 0.1 1.2 9.6 0.0 2.2 2 0 0 2 2 2 0 C-terminal AAA-associated domain DUF2791 PF10923.8 gi|307594332|ref|YP_003900649.1| - 7.2e-11 41.6 0.0 6e-06 25.3 0.0 2.1 2 0 0 2 2 2 2 P-loop Domain of unknown function (DUF2791) ATPase_2 PF01637.18 gi|307594332|ref|YP_003900649.1| - 1.6e-09 38.0 0.0 4.2e-09 36.7 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|307594332|ref|YP_003900649.1| - 0.00034 20.6 0.0 0.086 12.8 0.0 2.2 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.6 gi|307594332|ref|YP_003900649.1| - 0.0034 17.6 0.0 0.059 13.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.9 gi|307594332|ref|YP_003900649.1| - 0.023 13.6 0.0 0.034 13.1 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|307594332|ref|YP_003900649.1| - 0.023 15.1 0.0 0.047 14.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Bac_DnaA PF00308.18 gi|307594332|ref|YP_003900649.1| - 0.086 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein DAP3 PF10236.9 gi|307594332|ref|YP_003900649.1| - 0.13 11.4 0.1 2.8 7.0 0.1 2.3 3 0 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 TGT PF01702.18 gi|307594333|ref|YP_003900650.1| - 4.9e-07 29.2 0.0 5.9e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase GIY-YIG PF01541.24 gi|307594334|ref|YP_003900651.1| - 0.045 14.0 0.1 0.074 13.3 0.1 1.3 1 0 0 1 1 1 0 GIY-YIG catalytic domain 4HB_MCP_1 PF12729.7 gi|307594335|ref|YP_003900652.1| - 0.013 15.1 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction DUF2959 PF11172.8 gi|307594335|ref|YP_003900652.1| - 0.034 14.3 0.0 0.043 14.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) TetR_C_31 PF17940.1 gi|307594335|ref|YP_003900652.1| - 0.097 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain LPD16 PF18830.1 gi|307594336|ref|YP_003900653.1| - 0.0013 18.7 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Large polyvalent protein-associated domain 16 ThiC_Rad_SAM PF01964.18 gi|307594337|ref|YP_003900654.1| - 1.3e-161 538.1 0.0 1.7e-161 537.7 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Sigma70_r1_2 PF00140.20 gi|307594337|ref|YP_003900654.1| - 0.2 11.7 0.9 2.6 8.1 0.1 2.6 2 0 0 2 2 2 0 Sigma-70 factor, region 1.2 IRF-2BP1_2 PF11261.8 gi|307594337|ref|YP_003900654.1| - 0.22 11.1 0.7 0.94 9.1 0.1 2.2 2 0 0 2 2 2 0 Interferon regulatory factor 2-binding protein zinc finger DDE_Tnp_ISL3 PF01610.17 gi|307594338|ref|YP_003900655.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.4 1 1 0 1 1 1 0 Transposase XPC-binding PF09280.11 gi|307594338|ref|YP_003900655.1| - 0.14 11.9 0.0 17 5.3 0.0 2.3 2 0 0 2 2 2 0 XPC-binding domain CbiK PF06180.11 gi|307594338|ref|YP_003900655.1| - 0.17 11.2 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) PaREP1 PF05942.11 gi|307594339|ref|YP_003900656.1| - 3.5e-32 110.7 2.4 3.5e-32 110.7 2.4 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF3242 PF11586.8 gi|307594339|ref|YP_003900656.1| - 0.021 14.6 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3242) Tic110 PF16940.5 gi|307594339|ref|YP_003900656.1| - 0.025 13.1 0.3 0.03 12.8 0.3 1.2 1 0 0 1 1 1 0 Chloroplast envelope transporter HEPN PF05168.14 gi|307594339|ref|YP_003900656.1| - 0.029 14.5 2.3 0.11 12.6 2.3 2.0 1 1 0 1 1 1 0 HEPN domain Semialdhyde_dh PF01118.24 gi|307594340|ref|YP_003900657.1| - 9.8e-34 116.4 0.0 1.5e-33 115.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|307594340|ref|YP_003900657.1| - 7.1e-16 58.8 0.1 1.6e-15 57.7 0.1 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|307594340|ref|YP_003900657.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RimK PF08443.11 gi|307594343|ref|YP_003900660.1| - 1.7e-32 112.5 0.0 2.4e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|307594343|ref|YP_003900660.1| - 6e-11 42.1 0.0 1.8e-10 40.5 0.0 1.7 2 1 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|307594343|ref|YP_003900660.1| - 1.1e-08 35.2 0.0 4e-08 33.5 0.0 1.8 1 1 1 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|307594343|ref|YP_003900660.1| - 1.4e-06 28.0 0.0 0.00034 20.2 0.0 2.1 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus Synapsin_C PF02750.14 gi|307594343|ref|YP_003900660.1| - 0.028 13.9 0.1 0.042 13.4 0.1 1.2 1 0 0 1 1 1 0 Synapsin, ATP binding domain ATPgrasp_ST PF14397.6 gi|307594343|ref|YP_003900660.1| - 0.033 13.4 0.1 0.72 9.0 0.0 2.3 1 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|307594343|ref|YP_003900660.1| - 0.14 11.4 0.0 5.3 6.2 0.0 2.7 1 1 1 2 2 2 0 YheC/D like ATP-grasp Aminotran_3 PF00202.21 gi|307594344|ref|YP_003900661.1| - 6.9e-111 370.8 0.0 8.1e-111 370.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III HMGL-like PF00682.19 gi|307594345|ref|YP_003900662.1| - 1e-32 113.8 0.0 1.3e-32 113.4 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Peptidase_M20 PF01546.28 gi|307594346|ref|YP_003900663.1| - 1e-23 84.1 0.0 2e-23 83.2 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|307594346|ref|YP_003900663.1| - 2.2e-11 43.6 0.0 4.3e-11 42.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|307594346|ref|YP_003900663.1| - 0.067 12.9 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M28 RimK PF08443.11 gi|307594347|ref|YP_003900664.1| - 1.5e-37 129.0 0.0 2e-37 128.6 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|307594347|ref|YP_003900664.1| - 2.9e-12 46.3 0.0 4.4e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|307594347|ref|YP_003900664.1| - 4.3e-10 39.9 0.0 9e-10 38.8 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|307594347|ref|YP_003900664.1| - 6.2e-07 29.1 0.0 3.8e-06 26.5 0.0 2.0 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|307594347|ref|YP_003900664.1| - 1.2e-06 28.0 0.0 0.0012 18.1 0.0 2.4 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.6 gi|307594347|ref|YP_003900664.1| - 7e-05 22.4 0.0 0.0022 17.5 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.22 gi|307594347|ref|YP_003900664.1| - 0.0028 17.2 0.0 0.0065 16.1 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|307594347|ref|YP_003900664.1| - 0.016 14.5 0.0 1.7 7.8 0.0 2.6 1 1 0 1 1 1 0 YheC/D like ATP-grasp R2K_3 PF14243.6 gi|307594347|ref|YP_003900664.1| - 0.029 14.4 0.3 0.042 13.9 0.3 1.2 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 ATPgrasp_Ter PF15632.6 gi|307594347|ref|YP_003900664.1| - 0.11 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon zinc_ribbon_4 PF13717.6 gi|307594348|ref|YP_003900665.1| - 2e-05 24.4 1.0 0.043 13.7 0.2 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|307594348|ref|YP_003900665.1| - 0.00042 20.4 0.2 0.00057 19.9 0.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|307594348|ref|YP_003900665.1| - 0.00049 20.1 0.1 0.00051 20.0 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|307594348|ref|YP_003900665.1| - 0.0019 17.5 1.4 0.18 11.3 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|307594348|ref|YP_003900665.1| - 0.0022 17.9 1.7 0.49 10.3 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich CPXCG zf-HYPF PF07503.12 gi|307594348|ref|YP_003900665.1| - 0.0023 17.7 0.5 0.53 10.1 0.1 2.1 2 0 0 2 2 2 1 HypF finger DZR PF12773.7 gi|307594348|ref|YP_003900665.1| - 0.0025 17.8 0.3 0.0031 17.5 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.6 gi|307594348|ref|YP_003900665.1| - 0.0096 15.8 3.9 0.02 14.8 3.9 1.5 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|307594348|ref|YP_003900665.1| - 0.013 15.2 1.0 1.9 8.3 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 gi|307594348|ref|YP_003900665.1| - 0.013 15.5 0.8 0.067 13.2 0.8 1.9 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.6 gi|307594348|ref|YP_003900665.1| - 0.031 14.0 0.3 0.82 9.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|307594348|ref|YP_003900665.1| - 0.034 14.1 0.1 0.051 13.5 0.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PHD PF00628.29 gi|307594348|ref|YP_003900665.1| - 0.036 13.9 0.8 0.051 13.5 0.8 1.2 1 0 0 1 1 1 0 PHD-finger zinc-ribbons_6 PF07191.12 gi|307594348|ref|YP_003900665.1| - 0.045 13.7 0.7 0.11 12.5 0.7 1.6 1 1 0 1 1 1 0 zinc-ribbons zf-Sec23_Sec24 PF04810.15 gi|307594348|ref|YP_003900665.1| - 0.059 13.4 0.0 10 6.3 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger CpXC PF14353.6 gi|307594348|ref|YP_003900665.1| - 0.06 13.4 1.0 0.32 11.1 0.0 1.9 1 1 1 2 2 2 0 CpXC protein zf-LITAF-like PF10601.9 gi|307594348|ref|YP_003900665.1| - 0.079 13.2 0.5 5.8 7.3 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-CSL PF05207.13 gi|307594348|ref|YP_003900665.1| - 0.079 12.7 1.4 0.13 12.0 1.4 1.4 1 0 0 1 1 1 0 CSL zinc finger ADK_lid PF05191.14 gi|307594348|ref|YP_003900665.1| - 0.08 12.9 0.2 0.84 9.7 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid Sgf11 PF08209.11 gi|307594348|ref|YP_003900665.1| - 0.097 12.3 0.6 1.9 8.1 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf_UBZ PF18439.1 gi|307594348|ref|YP_003900665.1| - 0.12 12.0 0.9 10 5.8 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|307594348|ref|YP_003900665.1| - 0.23 11.0 2.9 2 8.0 3.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding YhfH PF14149.6 gi|307594348|ref|YP_003900665.1| - 0.25 11.3 3.2 5.9 7.0 0.2 2.1 2 0 0 2 2 2 0 YhfH-like protein DNA_RNApol_7kD PF03604.13 gi|307594348|ref|YP_003900665.1| - 0.25 11.0 2.2 1.5 8.6 2.0 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ADD_ATRX PF17981.1 gi|307594348|ref|YP_003900665.1| - 0.26 11.2 2.7 1.8 8.5 0.1 2.0 1 1 1 2 2 2 0 Cysteine Rich ADD domain Lar_restr_allev PF14354.6 gi|307594348|ref|YP_003900665.1| - 0.31 11.5 1.8 4.4 7.8 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2HC_2 PF13913.6 gi|307594348|ref|YP_003900665.1| - 0.42 10.6 3.6 0.51 10.3 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF983 PF06170.12 gi|307594348|ref|YP_003900665.1| - 0.44 11.0 1.9 22 5.5 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) AA_kinase PF00696.28 gi|307594349|ref|YP_003900666.1| - 3e-38 131.8 0.5 3.4e-38 131.6 0.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family Glyco_trans_1_4 PF13692.6 gi|307594349|ref|YP_003900666.1| - 0.081 13.4 0.1 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Aminotran_1_2 PF00155.21 gi|307594350|ref|YP_003900667.1| - 9.4e-59 199.4 0.0 1.1e-58 199.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|307594350|ref|YP_003900667.1| - 9.7e-09 34.2 0.0 1.4e-07 30.4 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|307594350|ref|YP_003900667.1| - 3.3e-05 23.0 0.0 6.8e-05 22.0 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|307594350|ref|YP_003900667.1| - 9.1e-05 21.9 0.0 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family CPSase_sm_chain PF00988.22 gi|307594351|ref|YP_003900668.1| - 2.7e-47 159.8 0.0 3.9e-47 159.3 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|307594351|ref|YP_003900668.1| - 1.5e-40 139.0 0.0 1.9e-40 138.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|307594351|ref|YP_003900668.1| - 8.7e-08 32.2 0.2 3.6e-05 23.6 0.1 2.6 1 1 1 2 2 2 1 Peptidase C26 CPSase_L_D2 PF02786.17 gi|307594352|ref|YP_003900669.1| - 8.4e-92 306.4 0.0 1.1e-60 204.8 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|307594352|ref|YP_003900669.1| - 1e-18 67.8 0.0 2.1e-18 66.8 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.6 gi|307594352|ref|YP_003900669.1| - 3.3e-13 49.5 0.0 3.5e-06 26.8 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|307594352|ref|YP_003900669.1| - 6.5e-10 38.8 0.0 7.7e-06 25.6 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|307594352|ref|YP_003900669.1| - 3.6e-09 36.4 0.0 0.00093 18.8 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|307594352|ref|YP_003900669.1| - 2.1e-07 31.1 0.0 0.00046 20.3 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|307594352|ref|YP_003900669.1| - 3.2e-05 23.8 0.0 0.051 13.3 0.0 2.5 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|307594352|ref|YP_003900669.1| - 0.00015 21.3 0.0 0.0043 16.5 0.0 2.6 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.11 gi|307594352|ref|YP_003900669.1| - 0.0004 20.1 0.0 0.11 12.0 0.0 3.5 4 0 0 4 4 4 1 RimK-like ATP-grasp domain LysR_substrate PF03466.20 gi|307594352|ref|YP_003900669.1| - 0.042 13.2 0.0 0.18 11.1 0.0 2.0 3 0 0 3 3 3 0 LysR substrate binding domain Raf1_HTH PF18579.1 gi|307594352|ref|YP_003900669.1| - 0.14 11.9 0.2 0.42 10.3 0.0 1.9 2 0 0 2 2 2 0 Rubisco accumulation factor 1 helix turn helix domain Lyase_1 PF00206.20 gi|307594353|ref|YP_003900670.1| - 5.6e-32 111.4 0.0 8.4e-32 110.8 0.0 1.3 1 0 0 1 1 1 1 Lyase Meth_synt_2 PF01717.18 gi|307594356|ref|YP_003900673.1| - 8.9e-14 51.5 0.0 5.4e-10 39.1 0.0 2.3 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain URO-D PF01208.17 gi|307594356|ref|YP_003900673.1| - 0.13 11.4 0.0 9.4 5.3 0.0 2.2 2 0 0 2 2 2 0 Uroporphyrinogen decarboxylase (URO-D) Arginosuc_synth PF00764.19 gi|307594357|ref|YP_003900674.1| - 8.9e-145 482.8 0.0 1.1e-144 482.6 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|307594357|ref|YP_003900674.1| - 0.003 17.1 0.0 0.0053 16.3 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|307594357|ref|YP_003900674.1| - 0.027 14.1 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Chorismate_synt PF01264.21 gi|307594358|ref|YP_003900675.1| - 5.9e-119 396.6 0.0 6.6e-119 396.4 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase ATPase_2 PF01637.18 gi|307594359|ref|YP_003900676.1| - 3.3e-23 82.8 0.0 4.9e-23 82.3 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|307594359|ref|YP_003900676.1| - 1.5e-11 44.4 0.0 7.8e-06 25.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|307594359|ref|YP_003900676.1| - 1e-07 32.3 0.0 3.7e-07 30.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307594359|ref|YP_003900676.1| - 8.2e-07 29.6 0.1 2.2e-06 28.2 0.0 1.8 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|307594359|ref|YP_003900676.1| - 0.00043 20.7 0.0 0.0024 18.3 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|307594359|ref|YP_003900676.1| - 0.0039 16.4 0.0 0.0072 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_35 PF14516.6 gi|307594359|ref|YP_003900676.1| - 0.019 13.8 0.0 0.14 11.0 0.0 2.0 1 1 0 1 1 1 0 AAA-like domain RsgA_GTPase PF03193.16 gi|307594359|ref|YP_003900676.1| - 0.022 14.7 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Nre_C PF04895.12 gi|307594359|ref|YP_003900676.1| - 0.084 12.8 0.0 0.23 11.4 0.0 1.8 1 0 0 1 1 1 0 Archaeal Nre, C-terminal PKcGMP_CC PF16808.5 gi|307594359|ref|YP_003900676.1| - 0.085 12.7 0.6 0.2 11.5 0.6 1.7 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase MMR_HSR1 PF01926.23 gi|307594359|ref|YP_003900676.1| - 0.099 12.7 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase CM_2 PF01817.21 gi|307594360|ref|YP_003900677.1| - 7.7e-17 61.4 0.5 1.4e-16 60.6 0.5 1.4 1 0 0 1 1 1 1 Chorismate mutase type II PDH PF02153.17 gi|307594360|ref|YP_003900677.1| - 2.8e-16 59.3 0.0 4.4e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase Rossmann-like PF10727.9 gi|307594360|ref|YP_003900677.1| - 0.012 15.5 0.6 0.026 14.4 0.6 1.5 1 0 0 1 1 1 0 Rossmann-like domain F420_oxidored PF03807.17 gi|307594360|ref|YP_003900677.1| - 0.017 15.7 0.2 3.3 8.3 0.2 2.7 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DAHP_synth_1 PF00793.20 gi|307594361|ref|YP_003900678.1| - 5e-77 258.5 0.0 6.2e-77 258.1 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|307594361|ref|YP_003900678.1| - 1.3e-06 28.1 0.0 7.3e-06 25.6 0.0 2.0 1 1 0 1 1 1 1 NeuB family DHQ_synthase PF01761.20 gi|307594362|ref|YP_003900679.1| - 5.7e-79 265.0 0.0 7.1e-79 264.7 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|307594362|ref|YP_003900679.1| - 1.5e-07 31.4 0.1 2.7e-07 30.5 0.1 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|307594362|ref|YP_003900679.1| - 0.1 11.4 1.6 0.13 11.0 0.2 1.8 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase Shikimate_dh_N PF08501.11 gi|307594363|ref|YP_003900680.1| - 3.7e-24 84.8 0.0 6.5e-24 84.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|307594363|ref|YP_003900680.1| - 4.5e-08 33.3 0.0 6.7e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|307594363|ref|YP_003900680.1| - 0.00018 21.8 0.0 0.0036 17.6 0.0 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain SDH_C PF18317.1 gi|307594363|ref|YP_003900680.1| - 0.0019 17.9 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Pyr_redox PF00070.27 gi|307594363|ref|YP_003900680.1| - 0.01 16.4 0.1 0.13 12.9 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|307594363|ref|YP_003900680.1| - 0.04 13.3 0.0 0.055 12.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|307594363|ref|YP_003900680.1| - 0.083 12.1 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain F420_oxidored PF03807.17 gi|307594363|ref|YP_003900680.1| - 0.14 12.7 0.0 0.25 11.9 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DHquinase_I PF01487.15 gi|307594364|ref|YP_003900681.1| - 2.7e-10 40.9 0.0 4.5e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Type I 3-dehydroquinase GHMP_kinases_N PF00288.26 gi|307594365|ref|YP_003900682.1| - 1.3e-10 41.3 2.0 3.2e-10 40.1 2.0 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|307594365|ref|YP_003900682.1| - 0.0042 17.4 0.1 0.016 15.5 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal Transket_pyr PF02779.24 gi|307594366|ref|YP_003900683.1| - 2.8e-37 128.1 0.0 3.3e-36 124.6 0.0 2.2 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_N PF00456.21 gi|307594366|ref|YP_003900683.1| - 7.1e-36 123.8 0.0 1.1e-35 123.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transketolase_C PF02780.20 gi|307594366|ref|YP_003900683.1| - 6.5e-21 74.5 0.0 1.1e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.6 gi|307594366|ref|YP_003900683.1| - 6.5e-10 38.7 0.0 4.1e-08 32.8 0.0 2.4 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|307594366|ref|YP_003900683.1| - 2.6e-08 33.8 2.6 2.4e-06 27.4 0.3 4.0 4 1 0 4 4 4 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFOR_II PF17147.4 gi|307594366|ref|YP_003900683.1| - 5.1e-05 23.5 0.1 0.00013 22.2 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II XFP_N PF09364.10 gi|307594366|ref|YP_003900683.1| - 7.6e-05 21.7 0.0 0.00011 21.1 0.0 1.3 1 0 0 1 1 1 1 XFP N-terminal domain E1_dh PF00676.20 gi|307594366|ref|YP_003900683.1| - 0.032 13.2 0.0 0.051 12.5 0.0 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component Radical_SAM PF04055.21 gi|307594366|ref|YP_003900683.1| - 0.2 12.0 0.2 2.5 8.4 0.0 2.5 2 1 0 2 2 2 0 Radical SAM superfamily EPSP_synthase PF00275.20 gi|307594367|ref|YP_003900684.1| - 5.5e-73 246.0 0.0 6.3e-73 245.8 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) POR PF01558.18 gi|307594368|ref|YP_003900685.1| - 3.5e-11 43.5 0.0 3.9e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase IGPS PF00218.21 gi|307594369|ref|YP_003900686.1| - 2.4e-50 171.1 0.0 2.8e-50 170.9 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 gi|307594369|ref|YP_003900686.1| - 0.0011 18.2 0.0 0.0016 17.7 0.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|307594369|ref|YP_003900686.1| - 0.0012 18.4 0.3 0.002 17.6 0.3 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein ADH_zinc_N PF00107.26 gi|307594369|ref|YP_003900686.1| - 0.011 15.7 0.0 0.054 13.5 0.0 2.0 1 1 0 1 1 1 0 Zinc-binding dehydrogenase FMN_dh PF01070.18 gi|307594369|ref|YP_003900686.1| - 0.012 14.7 0.6 0.019 14.0 0.6 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase NanE PF04131.14 gi|307594369|ref|YP_003900686.1| - 0.012 14.8 0.0 0.02 14.1 0.0 1.5 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.20 gi|307594370|ref|YP_003900687.1| - 2.4e-26 92.1 0.0 3.4e-26 91.7 0.0 1.1 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 gi|307594370|ref|YP_003900687.1| - 4.1e-05 23.2 0.0 6.7e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 PcrB family NanE PF04131.14 gi|307594370|ref|YP_003900687.1| - 0.00055 19.2 0.0 0.0011 18.2 0.0 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|307594370|ref|YP_003900687.1| - 0.0051 16.3 0.0 0.014 14.9 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|307594370|ref|YP_003900687.1| - 0.0054 15.8 0.2 0.0084 15.2 0.2 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain IGPS PF00218.21 gi|307594370|ref|YP_003900687.1| - 0.0073 15.5 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase G3P_antiterm PF04309.12 gi|307594370|ref|YP_003900687.1| - 0.039 13.4 0.0 0.078 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator PALP PF00291.25 gi|307594371|ref|YP_003900688.1| - 7.2e-51 173.3 0.0 8.4e-51 173.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glycos_transf_3 PF00591.21 gi|307594372|ref|YP_003900689.1| - 1.2e-82 277.3 0.0 1.8e-82 276.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|307594372|ref|YP_003900689.1| - 2e-11 43.6 0.4 4.4e-11 42.5 0.4 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.22 gi|307594373|ref|YP_003900690.1| - 1.2e-23 83.9 0.0 1.5e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Chorismate_bind PF00425.18 gi|307594374|ref|YP_003900691.1| - 1.6e-88 296.6 0.0 1.9e-88 296.4 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|307594374|ref|YP_003900691.1| - 4.6e-07 30.1 0.0 5.9e-05 23.3 0.0 3.2 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|307594375|ref|YP_003900692.1| - 2.6e-51 174.1 0.0 2.9e-51 174.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|307594375|ref|YP_003900692.1| - 2.4e-13 50.4 0.1 5.7e-13 49.1 0.1 1.7 1 1 0 1 1 1 1 Peptidase C26 PPDK_N PF01326.19 gi|307594376|ref|YP_003900693.1| - 6.5e-108 360.9 0.0 9.8e-108 360.3 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|307594376|ref|YP_003900693.1| - 4.8e-79 265.5 0.0 7.4e-79 264.9 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|307594376|ref|YP_003900693.1| - 3.4e-27 94.0 0.7 9.4e-27 92.6 0.7 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain GIDA_assoc PF13932.6 gi|307594376|ref|YP_003900693.1| - 0.026 14.7 0.0 0.05 13.8 0.0 1.4 1 0 0 1 1 1 0 GidA associated domain Radical_SAM PF04055.21 gi|307594376|ref|YP_003900693.1| - 0.13 12.6 0.1 2.8 8.3 0.0 2.7 2 0 0 2 2 2 0 Radical SAM superfamily LysE PF01810.18 gi|307594377|ref|YP_003900694.1| - 1.4e-31 109.5 17.5 1.6e-31 109.3 17.5 1.0 1 0 0 1 1 1 1 LysE type translocator Phtf-FEM1B_bdg PF12129.8 gi|307594377|ref|YP_003900694.1| - 0.0037 17.1 1.1 0.0062 16.4 1.1 1.4 1 0 0 1 1 1 1 Male germ-cell putative homeodomain transcription factor CAAD PF14159.6 gi|307594377|ref|YP_003900694.1| - 8.2 6.3 10.3 0.18 11.6 1.3 2.5 2 1 1 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase MaoC_dehydratas PF01575.19 gi|307594378|ref|YP_003900695.1| - 9.3e-28 96.3 0.0 1.3e-12 47.4 0.0 2.1 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|307594378|ref|YP_003900695.1| - 6.3e-08 32.8 0.0 8.4e-06 26.0 0.0 2.8 2 2 0 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|307594378|ref|YP_003900695.1| - 0.038 14.3 0.2 6.1 7.3 0.0 3.2 3 0 0 3 3 3 0 Thioesterase superfamily MazE_antitoxin PF04014.18 gi|307594379|ref|YP_003900696.1| - 4.1e-05 23.4 0.3 0.0063 16.4 0.1 2.7 2 1 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin Amidohydro_1 PF01979.20 gi|307594380|ref|YP_003900697.1| - 1.7e-17 63.8 0.0 5e-17 62.2 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|307594380|ref|YP_003900697.1| - 1e-07 31.8 0.0 0.0036 16.8 0.0 2.9 3 0 0 3 3 3 2 Amidohydrolase family ABC_tran PF00005.27 gi|307594381|ref|YP_003900698.1| - 5.5e-23 82.0 0.0 7.6e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307594381|ref|YP_003900698.1| - 1.8e-10 41.1 0.0 9.6e-05 22.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307594381|ref|YP_003900698.1| - 2.2e-07 30.5 0.2 0.014 14.8 0.0 2.4 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|307594381|ref|YP_003900698.1| - 0.00069 20.2 0.1 0.0011 19.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|307594381|ref|YP_003900698.1| - 0.0013 18.5 0.0 0.0032 17.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|307594381|ref|YP_003900698.1| - 0.0029 17.8 0.0 0.0045 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|307594381|ref|YP_003900698.1| - 0.0062 15.3 0.0 1.8 7.1 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|307594381|ref|YP_003900698.1| - 0.025 14.1 0.1 0.066 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|307594381|ref|YP_003900698.1| - 0.028 13.6 0.0 0.088 12.0 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.6 gi|307594381|ref|YP_003900698.1| - 0.031 14.0 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|307594381|ref|YP_003900698.1| - 0.033 13.8 0.3 0.11 12.1 0.0 2.0 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|307594381|ref|YP_003900698.1| - 0.05 14.0 0.0 0.061 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|307594381|ref|YP_003900698.1| - 0.052 13.5 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|307594381|ref|YP_003900698.1| - 0.07 13.0 0.1 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase DUF5594 PF18057.1 gi|307594381|ref|YP_003900698.1| - 0.087 12.7 0.0 4.1 7.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5594) AAA_22 PF13401.6 gi|307594381|ref|YP_003900698.1| - 0.097 12.9 0.1 0.21 11.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|307594381|ref|YP_003900698.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|307594381|ref|YP_003900698.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|307594381|ref|YP_003900698.1| - 0.16 12.2 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain UPF0051 PF01458.17 gi|307594382|ref|YP_003900699.1| - 9.5e-60 202.0 0.0 1.2e-59 201.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|307594383|ref|YP_003900700.1| - 2.7e-62 210.3 0.0 3.7e-62 209.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|307594384|ref|YP_003900701.1| - 1.3e-31 110.0 0.0 1.7e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Methyltransf_11 PF08241.12 gi|307594385|ref|YP_003900702.1| - 2.9e-13 50.3 0.0 7.5e-13 48.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|307594385|ref|YP_003900702.1| - 4e-07 30.0 0.0 7.4e-07 29.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307594385|ref|YP_003900702.1| - 9.7e-07 29.4 0.0 2.1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|307594385|ref|YP_003900702.1| - 6.9e-06 25.6 0.0 9.5e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|307594385|ref|YP_003900702.1| - 1.6e-05 25.5 0.0 3.6e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307594385|ref|YP_003900702.1| - 0.0018 18.1 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|307594385|ref|YP_003900702.1| - 0.018 14.9 0.0 0.054 13.3 0.0 1.7 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|307594385|ref|YP_003900702.1| - 0.2 10.2 0.0 0.34 9.4 0.0 1.4 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PhoU PF01895.19 gi|307594386|ref|YP_003900703.1| - 3.1e-20 72.4 9.7 5.3e-16 58.9 1.1 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|307594386|ref|YP_003900703.1| - 5e-08 32.7 0.1 2.4e-07 30.5 0.0 2.3 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Cas_Csn2 PF09711.10 gi|307594386|ref|YP_003900703.1| - 0.013 15.1 0.1 0.35 10.5 0.1 2.4 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csn2) NTPase_1 PF03266.15 gi|307594387|ref|YP_003900704.1| - 7.4e-48 162.6 0.1 8.4e-48 162.4 0.1 1.0 1 0 0 1 1 1 1 NTPase AAA PF00004.29 gi|307594387|ref|YP_003900704.1| - 2.4e-07 31.3 0.0 8.2e-07 29.5 0.0 2.0 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|307594387|ref|YP_003900704.1| - 6.4e-07 29.3 0.0 1.9e-06 27.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|307594387|ref|YP_003900704.1| - 2.6e-06 27.7 0.1 1.2e-05 25.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|307594387|ref|YP_003900704.1| - 4.2e-06 26.8 0.2 0.015 15.3 0.0 2.5 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|307594387|ref|YP_003900704.1| - 5.8e-06 26.9 0.1 1.2e-05 25.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|307594387|ref|YP_003900704.1| - 1.3e-05 25.6 0.1 0.013 15.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|307594387|ref|YP_003900704.1| - 2.4e-05 24.6 0.4 0.00014 22.2 0.0 2.3 3 1 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|307594387|ref|YP_003900704.1| - 3.7e-05 24.1 2.0 0.0028 18.0 0.1 2.9 2 1 0 3 3 3 1 AAA domain MMR_HSR1 PF01926.23 gi|307594387|ref|YP_003900704.1| - 4.1e-05 23.6 0.1 7e-05 22.9 0.1 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|307594387|ref|YP_003900704.1| - 4.7e-05 23.8 0.1 0.00035 21.0 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain ATPase PF06745.13 gi|307594387|ref|YP_003900704.1| - 8.1e-05 22.1 0.0 9.9e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_24 PF13479.6 gi|307594387|ref|YP_003900704.1| - 9.7e-05 22.2 0.0 0.00016 21.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|307594387|ref|YP_003900704.1| - 0.00013 21.9 0.0 0.0016 18.3 0.0 2.0 2 0 0 2 2 2 1 NACHT domain RuvB_N PF05496.12 gi|307594387|ref|YP_003900704.1| - 0.00023 20.9 0.5 0.043 13.5 0.1 2.9 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain cobW PF02492.19 gi|307594387|ref|YP_003900704.1| - 0.00054 19.6 0.0 0.00088 18.9 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|307594387|ref|YP_003900704.1| - 0.00075 19.5 0.1 0.0038 17.2 0.0 2.0 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea Viral_helicase1 PF01443.18 gi|307594387|ref|YP_003900704.1| - 0.00084 19.1 0.0 0.0091 15.8 0.0 2.1 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase MeaB PF03308.16 gi|307594387|ref|YP_003900704.1| - 0.0012 17.9 1.4 0.0026 16.8 1.5 1.6 1 1 1 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|307594387|ref|YP_003900704.1| - 0.0018 18.3 0.0 0.054 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF2478 PF10649.9 gi|307594387|ref|YP_003900704.1| - 0.0024 17.5 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2478) ATP_bind_1 PF03029.17 gi|307594387|ref|YP_003900704.1| - 0.0032 17.3 0.0 0.0077 16.0 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|307594387|ref|YP_003900704.1| - 0.0038 17.4 0.1 0.0067 16.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain Roc PF08477.13 gi|307594387|ref|YP_003900704.1| - 0.0056 16.9 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Sigma54_activat PF00158.26 gi|307594387|ref|YP_003900704.1| - 0.0065 16.2 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|307594387|ref|YP_003900704.1| - 0.0067 16.2 0.0 0.15 11.8 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|307594387|ref|YP_003900704.1| - 0.013 15.4 0.0 0.051 13.5 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain TniB PF05621.11 gi|307594387|ref|YP_003900704.1| - 0.016 14.6 0.1 1 8.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_29 PF13555.6 gi|307594387|ref|YP_003900704.1| - 0.017 14.8 0.1 0.076 12.8 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain MobB PF03205.14 gi|307594387|ref|YP_003900704.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|307594387|ref|YP_003900704.1| - 0.02 15.3 0.0 0.045 14.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|307594387|ref|YP_003900704.1| - 0.022 14.7 0.1 0.061 13.2 0.0 1.8 2 0 0 2 2 1 0 RsgA GTPase AAA_7 PF12775.7 gi|307594387|ref|YP_003900704.1| - 0.028 13.9 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|307594387|ref|YP_003900704.1| - 0.029 13.7 0.8 0.067 12.6 0.1 1.9 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.27 gi|307594387|ref|YP_003900704.1| - 0.04 14.4 0.0 0.062 13.8 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_11 PF13086.6 gi|307594387|ref|YP_003900704.1| - 0.045 13.5 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|307594387|ref|YP_003900704.1| - 0.047 13.3 0.1 0.096 12.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|307594387|ref|YP_003900704.1| - 0.052 12.7 0.1 0.097 11.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain KTI12 PF08433.10 gi|307594387|ref|YP_003900704.1| - 0.053 13.0 0.1 0.13 11.7 0.0 1.7 2 0 0 2 2 1 0 Chromatin associated protein KTI12 SRP54 PF00448.22 gi|307594387|ref|YP_003900704.1| - 0.061 13.0 0.1 0.19 11.4 0.0 1.8 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain FeoB_N PF02421.18 gi|307594387|ref|YP_003900704.1| - 0.066 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B TrwB_AAD_bind PF10412.9 gi|307594387|ref|YP_003900704.1| - 0.088 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TsaE PF02367.17 gi|307594387|ref|YP_003900704.1| - 0.12 12.4 0.1 0.43 10.6 0.1 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_21 PF13304.6 gi|307594387|ref|YP_003900704.1| - 0.13 12.0 0.1 3 7.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system DAP3 PF10236.9 gi|307594387|ref|YP_003900704.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 T2SSE PF00437.20 gi|307594387|ref|YP_003900704.1| - 0.15 11.1 0.0 0.96 8.4 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein KAP_NTPase PF07693.14 gi|307594387|ref|YP_003900704.1| - 0.15 11.3 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain DUF3783 PF12646.7 gi|307594387|ref|YP_003900704.1| - 0.22 11.5 1.1 0.45 10.5 0.3 1.9 3 0 0 3 3 1 0 Domain of unknown function (DUF3783) Metallophos_2 PF12850.7 gi|307594388|ref|YP_003900705.1| - 7e-07 29.6 0.1 0.0003 21.0 0.1 2.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|307594388|ref|YP_003900705.1| - 1.8e-06 28.6 0.8 2.7e-05 24.8 0.8 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|307594388|ref|YP_003900705.1| - 3.8e-06 26.4 0.5 0.022 14.1 0.2 2.5 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily DAHP_snth_FXD PF18152.1 gi|307594388|ref|YP_003900705.1| - 0.039 13.8 0.0 9.6 6.1 0.0 2.8 2 1 0 2 2 2 0 DAHP synthase ferredoxin-like domain OST_IS PF18246.1 gi|307594388|ref|YP_003900705.1| - 0.15 12.4 0.4 15 6.0 0.1 3.0 3 0 0 3 3 3 0 Oligosaccharyltransferase Insert domain Inositol_P PF00459.25 gi|307594389|ref|YP_003900706.1| - 4.2e-16 59.3 0.0 3.8e-15 56.1 0.0 1.9 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|307594389|ref|YP_003900706.1| - 0.00077 19.0 0.1 0.0023 17.5 0.0 1.7 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase, N-terminal domain Lar_restr_allev PF14354.6 gi|307594390|ref|YP_003900707.1| - 8.2e-05 22.9 0.1 0.00011 22.5 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|307594390|ref|YP_003900707.1| - 0.00017 21.1 1.4 0.00024 20.5 1.4 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|307594390|ref|YP_003900707.1| - 0.00045 20.3 0.8 0.00061 19.9 0.8 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|307594390|ref|YP_003900707.1| - 0.01 15.8 0.9 0.019 15.0 0.9 1.6 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Ribosomal_S27 PF01599.19 gi|307594390|ref|YP_003900707.1| - 0.014 15.6 2.0 0.028 14.6 2.0 1.5 1 1 0 1 1 1 0 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|307594390|ref|YP_003900707.1| - 0.014 15.3 0.4 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|307594390|ref|YP_003900707.1| - 0.039 13.6 0.6 0.19 11.4 0.6 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|307594390|ref|YP_003900707.1| - 0.042 13.7 0.6 0.07 13.0 0.6 1.3 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-Mss51 PF13824.6 gi|307594390|ref|YP_003900707.1| - 0.046 13.8 0.8 2.9 8.1 0.1 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Yippee-Mis18 PF03226.14 gi|307594390|ref|YP_003900707.1| - 0.068 13.4 0.1 0.15 12.2 0.0 1.6 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly RNA_POL_M_15KD PF02150.16 gi|307594390|ref|YP_003900707.1| - 0.078 12.9 1.1 0.12 12.3 1.1 1.2 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|307594390|ref|YP_003900707.1| - 0.091 12.5 1.6 8.6 6.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|307594390|ref|YP_003900707.1| - 0.13 12.4 0.9 0.53 10.4 0.9 1.9 1 1 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain Zn_Tnp_IS1595 PF12760.7 gi|307594390|ref|YP_003900707.1| - 0.22 11.5 2.3 11 6.1 2.3 2.2 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Mu-like_Com PF10122.9 gi|307594390|ref|YP_003900707.1| - 1.3 8.6 4.3 2 7.9 0.5 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com SWIM PF04434.17 gi|307594391|ref|YP_003900708.1| - 0.0022 17.6 0.2 0.0038 16.9 0.2 1.3 1 0 0 1 1 1 1 SWIM zinc finger BetaGal_dom3 PF13363.6 gi|307594393|ref|YP_003900710.1| - 0.043 13.4 0.1 0.11 12.1 0.0 1.6 2 0 0 2 2 2 0 Beta-galactosidase, domain 3 Methyltransf_25 PF13649.6 gi|307594395|ref|YP_003900712.1| - 1.7e-13 51.1 0.0 2.7e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|307594395|ref|YP_003900712.1| - 6.1e-13 49.2 0.0 1e-12 48.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|307594395|ref|YP_003900712.1| - 6.4e-13 48.9 0.0 7.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|307594395|ref|YP_003900712.1| - 6.3e-09 36.5 0.0 1.2e-08 35.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307594395|ref|YP_003900712.1| - 9e-05 22.3 0.0 0.00022 21.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|307594395|ref|YP_003900712.1| - 0.0011 18.4 0.0 0.0022 17.4 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family DNAPolymera_Pol PF11590.8 gi|307594395|ref|YP_003900712.1| - 0.061 13.2 0.3 0.15 11.9 0.3 1.6 1 0 0 1 1 1 0 DNA polymerase catalytic subunit Pol AMP-binding PF00501.28 gi|307594396|ref|YP_003900713.1| - 7e-80 268.7 0.0 8.6e-80 268.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|307594396|ref|YP_003900713.1| - 8.4e-22 77.9 0.2 1.5e-21 77.1 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Amidohydro_2 PF04909.14 gi|307594397|ref|YP_003900714.1| - 1.7e-19 70.7 0.0 3e-19 69.9 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.20 gi|307594397|ref|YP_003900714.1| - 0.15 11.4 0.0 0.26 10.5 0.0 1.5 2 0 0 2 2 2 0 Amidohydrolase family TatD_DNase PF01026.21 gi|307594397|ref|YP_003900714.1| - 0.25 10.7 0.0 0.62 9.4 0.0 1.6 1 1 0 1 1 1 0 TatD related DNase ECH_1 PF00378.20 gi|307594398|ref|YP_003900715.1| - 1.9e-52 178.1 0.0 2.1e-52 177.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|307594398|ref|YP_003900715.1| - 6.6e-24 85.0 0.1 1.1e-19 71.1 0.1 2.1 1 1 0 2 2 2 2 Enoyl-CoA hydratase/isomerase OB_aCoA_assoc PF01796.17 gi|307594399|ref|YP_003900716.1| - 1.1e-15 57.4 0.2 2e-15 56.5 0.2 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|307594399|ref|YP_003900716.1| - 1.1e-12 47.5 3.4 2.1e-12 46.6 3.4 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|307594399|ref|YP_003900716.1| - 0.016 15.2 0.1 0.025 14.6 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CpXC PF14353.6 gi|307594399|ref|YP_003900716.1| - 0.063 13.3 0.3 0.24 11.4 0.3 1.8 1 1 0 1 1 1 0 CpXC protein DUF2688 PF10892.8 gi|307594399|ref|YP_003900716.1| - 0.14 11.6 1.3 0.25 10.9 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2688) Thiolase_N PF00108.23 gi|307594400|ref|YP_003900717.1| - 1.9e-23 83.1 0.0 4.4e-22 78.7 0.0 2.3 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|307594400|ref|YP_003900717.1| - 4.3e-08 32.8 0.1 3.2e-06 26.8 0.0 2.8 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|307594400|ref|YP_003900717.1| - 2.3e-06 27.4 7.4 0.00013 21.7 2.3 3.2 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|307594400|ref|YP_003900717.1| - 0.0026 17.6 0.9 0.21 11.5 0.8 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 3HCDH_N PF02737.18 gi|307594401|ref|YP_003900718.1| - 3.3e-71 238.9 0.9 4.7e-71 238.4 0.9 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|307594401|ref|YP_003900718.1| - 9e-65 218.5 0.0 1.2e-64 218.0 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|307594401|ref|YP_003900718.1| - 1.8e-48 163.1 0.3 1.5e-23 83.2 0.0 3.4 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|307594401|ref|YP_003900718.1| - 7.5e-41 140.7 0.0 5.6e-40 137.8 0.0 2.0 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|307594401|ref|YP_003900718.1| - 4.1e-06 27.1 0.2 8.9e-06 26.0 0.2 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|307594401|ref|YP_003900718.1| - 2.3e-05 24.9 0.5 7e-05 23.3 0.5 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|307594401|ref|YP_003900718.1| - 0.00013 21.6 0.3 0.00023 20.8 0.3 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|307594401|ref|YP_003900718.1| - 0.00055 20.0 1.7 0.0015 18.6 1.7 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.21 gi|307594401|ref|YP_003900718.1| - 0.0025 17.2 1.0 0.0046 16.3 1.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|307594401|ref|YP_003900718.1| - 0.02 14.1 0.2 0.033 13.4 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|307594401|ref|YP_003900718.1| - 0.092 12.1 0.7 0.35 10.2 0.2 2.0 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SCP2 PF02036.17 gi|307594402|ref|YP_003900719.1| - 3e-11 43.7 0.0 3.3e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.6 gi|307594402|ref|YP_003900719.1| - 0.00029 21.1 0.0 0.00048 20.4 0.0 1.3 1 1 0 1 1 1 1 Alkyl sulfatase C-terminal SCP_3 PF17844.1 gi|307594402|ref|YP_003900719.1| - 0.045 13.5 0.0 0.063 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial SCP ortholog DUF1856 PF08983.10 gi|307594402|ref|YP_003900719.1| - 0.08 13.2 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1856) 2-Hacid_dh_C PF02826.19 gi|307594403|ref|YP_003900720.1| - 4.5e-54 182.5 0.0 1e-53 181.4 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|307594403|ref|YP_003900720.1| - 5.1e-28 97.4 0.0 6.8e-28 97.0 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.15 gi|307594403|ref|YP_003900720.1| - 0.00019 21.8 0.1 0.74 10.3 0.0 2.3 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Shikimate_DH PF01488.20 gi|307594403|ref|YP_003900720.1| - 0.036 14.1 0.3 2.3 8.3 0.0 2.7 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ThiC_Rad_SAM PF01964.18 gi|307594403|ref|YP_003900720.1| - 0.04 12.7 0.2 11 4.6 0.1 2.9 2 1 1 3 3 3 0 Radical SAM ThiC family F420_oxidored PF03807.17 gi|307594403|ref|YP_003900720.1| - 0.06 13.9 0.8 8.1 7.1 0.0 2.5 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|307594403|ref|YP_003900720.1| - 0.061 13.5 0.1 0.27 11.4 0.0 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TPP_enzyme_N PF02776.18 gi|307594404|ref|YP_003900721.1| - 4.9e-56 189.0 0.3 5e-54 182.5 0.0 3.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|307594404|ref|YP_003900721.1| - 2.5e-41 140.6 0.1 5e-41 139.7 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|307594404|ref|YP_003900721.1| - 6.7e-35 120.1 1.0 4.2e-34 117.6 0.0 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TP_methylase PF00590.20 gi|307594404|ref|YP_003900721.1| - 0.0058 16.6 3.1 0.29 11.0 0.1 2.6 3 0 0 3 3 3 2 Tetrapyrrole (Corrin/Porphyrin) Methylases POR_N PF01855.19 gi|307594404|ref|YP_003900721.1| - 0.026 14.2 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ADH_N PF08240.12 gi|307594405|ref|YP_003900722.1| - 5.5e-30 103.5 0.0 8.4e-30 102.9 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|307594405|ref|YP_003900722.1| - 9.4e-27 93.5 0.0 2.4e-26 92.2 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|307594405|ref|YP_003900722.1| - 9.5e-09 36.4 0.0 2.5e-08 35.1 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|307594405|ref|YP_003900722.1| - 3.1e-07 30.1 0.0 5.3e-07 29.3 0.0 1.3 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|307594405|ref|YP_003900722.1| - 1.5e-05 24.4 0.2 2.4e-05 23.8 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|307594405|ref|YP_003900722.1| - 0.027 14.7 0.0 0.055 13.7 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|307594405|ref|YP_003900722.1| - 0.061 12.7 0.1 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SCP2 PF02036.17 gi|307594406|ref|YP_003900723.1| - 0.0003 21.3 0.0 0.00081 19.8 0.0 1.7 2 0 0 2 2 2 1 SCP-2 sterol transfer family Acyl-CoA_dh_1 PF00441.24 gi|307594407|ref|YP_003900724.1| - 1.7e-26 93.3 0.1 2.6e-26 92.6 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|307594407|ref|YP_003900724.1| - 1.4e-15 57.7 0.0 2.2e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|307594407|ref|YP_003900724.1| - 4e-15 56.5 0.0 7.6e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|307594407|ref|YP_003900724.1| - 3.1e-12 46.5 0.0 6.7e-12 45.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain ADC PF06314.11 gi|307594408|ref|YP_003900725.1| - 1.6e-41 142.5 0.1 1.9e-41 142.2 0.1 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) DUF4131 PF13567.6 gi|307594410|ref|YP_003900727.1| - 0.069 12.8 0.1 0.1 12.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4418 PF14387.6 gi|307594411|ref|YP_003900728.1| - 0.021 15.0 1.3 0.021 15.0 1.3 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4418) DUF5083 PF16890.5 gi|307594411|ref|YP_003900728.1| - 1.4 8.7 20.7 0.16 11.7 4.8 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5083) DAO PF01266.24 gi|307594412|ref|YP_003900729.1| - 6.9e-49 167.3 0.1 4.1e-48 164.7 0.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|307594412|ref|YP_003900729.1| - 6.3e-13 48.9 1.6 1.2e-12 47.9 1.6 1.5 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_3 PF01494.19 gi|307594412|ref|YP_003900729.1| - 4.3e-06 26.2 0.1 0.00065 19.0 0.3 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|307594412|ref|YP_003900729.1| - 6.2e-06 26.4 0.1 1.5e-05 25.1 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|307594412|ref|YP_003900729.1| - 1.5e-05 24.4 0.1 0.0036 16.6 0.1 2.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|307594412|ref|YP_003900729.1| - 1.6e-05 24.2 0.1 4.7e-05 22.7 0.1 1.8 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|307594412|ref|YP_003900729.1| - 3.7e-05 22.6 0.1 0.0026 16.5 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|307594412|ref|YP_003900729.1| - 8.1e-05 22.0 0.1 0.079 12.2 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307594412|ref|YP_003900729.1| - 0.001 19.6 0.3 0.045 14.3 0.4 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|307594412|ref|YP_003900729.1| - 0.001 18.2 0.1 0.091 11.8 0.1 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|307594412|ref|YP_003900729.1| - 0.0014 17.8 1.0 0.0025 17.0 0.3 1.9 2 1 0 2 2 2 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|307594412|ref|YP_003900729.1| - 0.0038 16.8 0.1 0.0057 16.2 0.1 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|307594412|ref|YP_003900729.1| - 0.059 13.0 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|307594412|ref|YP_003900729.1| - 0.065 13.1 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1145 PF06611.12 gi|307594412|ref|YP_003900729.1| - 0.085 12.8 0.1 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1145) SO_alpha_A3 PF17806.1 gi|307594412|ref|YP_003900729.1| - 0.1 12.9 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Sarcosine oxidase A3 domain Sigma_1_2 PF03084.14 gi|307594412|ref|YP_003900729.1| - 0.17 11.1 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 Reoviral Sigma1/Sigma2 family Pyr_redox_2 PF07992.14 gi|307594413|ref|YP_003900730.1| - 7.1e-10 38.6 0.7 3.1e-09 36.5 0.6 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|307594413|ref|YP_003900730.1| - 6.3e-08 32.2 0.3 0.0032 16.8 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|307594413|ref|YP_003900730.1| - 1.3e-07 31.7 0.5 6.8e-07 29.4 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|307594413|ref|YP_003900730.1| - 1.6e-07 31.8 1.0 0.00039 20.9 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|307594413|ref|YP_003900730.1| - 4.3e-05 22.9 0.2 0.00014 21.3 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|307594413|ref|YP_003900730.1| - 0.002 17.3 0.7 0.003 16.7 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.6 gi|307594413|ref|YP_003900730.1| - 0.0095 16.4 0.2 0.024 15.1 0.1 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding Glyco_transf_4 PF13439.6 gi|307594413|ref|YP_003900730.1| - 0.016 15.2 0.0 0.17 11.9 0.0 2.3 2 0 0 2 2 2 0 Glycosyltransferase Family 4 DAO PF01266.24 gi|307594413|ref|YP_003900730.1| - 0.028 14.0 5.0 0.036 13.6 0.8 2.5 3 1 0 3 3 3 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|307594413|ref|YP_003900730.1| - 0.031 13.3 0.1 0.054 12.5 0.1 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|307594413|ref|YP_003900730.1| - 0.041 13.2 0.0 0.064 12.5 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|307594413|ref|YP_003900730.1| - 0.047 12.8 0.1 0.066 12.3 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A FGGY_N PF00370.21 gi|307594414|ref|YP_003900731.1| - 5.8e-24 85.0 0.0 8.4e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|307594414|ref|YP_003900731.1| - 2.2e-23 83.0 0.0 9e-23 81.0 0.0 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain FAD_binding_4 PF01565.23 gi|307594415|ref|YP_003900732.1| - 1e-37 129.0 0.4 1.6e-37 128.4 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|307594415|ref|YP_003900732.1| - 3.2e-29 102.3 0.0 4.5e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain Rieske PF00355.26 gi|307594416|ref|YP_003900733.1| - 1.3e-11 44.2 0.0 1.6e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|307594416|ref|YP_003900733.1| - 1.4e-05 25.0 0.0 2.2e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain gag-asp_proteas PF13975.6 gi|307594417|ref|YP_003900734.1| - 2.8e-07 31.0 0.0 3.9e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|307594417|ref|YP_003900734.1| - 4.9e-07 30.3 0.0 5.8e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease Radical_SAM PF04055.21 gi|307594418|ref|YP_003900735.1| - 1.8e-15 57.7 0.0 3.6e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily DUF4995 PF16386.5 gi|307594418|ref|YP_003900735.1| - 0.01 15.8 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF905 PF06006.12 gi|307594418|ref|YP_003900735.1| - 0.15 12.1 0.1 0.31 11.0 0.1 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF905) Radical_SAM PF04055.21 gi|307594419|ref|YP_003900736.1| - 1.7e-11 44.8 0.1 2.6e-11 44.2 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily VitK2_biosynth PF02621.14 gi|307594420|ref|YP_003900737.1| - 5.4e-26 91.7 0.0 7.7e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 Menaquinone biosynthesis VitK2_biosynth PF02621.14 gi|307594421|ref|YP_003900738.1| - 2.8e-78 263.1 0.1 3.1e-78 262.9 0.1 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis YacG PF03884.14 gi|307594421|ref|YP_003900738.1| - 0.29 10.9 0.1 0.52 10.1 0.1 1.3 1 0 0 1 1 1 0 DNA gyrase inhibitor YacG CoA_transf_3 PF02515.17 gi|307594422|ref|YP_003900739.1| - 1.3e-78 264.7 0.0 1.8e-78 264.3 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III 4HBT PF03061.22 gi|307594423|ref|YP_003900740.1| - 1.1e-15 57.7 1.3 1.9e-15 57.0 1.3 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|307594423|ref|YP_003900740.1| - 1.4e-05 25.5 0.1 1.8e-05 25.1 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Orn_Arg_deC_N PF02784.16 gi|307594424|ref|YP_003900741.1| - 3.5e-34 118.3 0.0 4.8e-34 117.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|307594424|ref|YP_003900741.1| - 1.9e-26 92.2 0.0 2.2e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ribosomal_L5_C PF00673.21 gi|307594425|ref|YP_003900742.1| - 6.8e-20 71.0 0.0 1.2e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|307594425|ref|YP_003900742.1| - 1.4e-19 70.2 0.1 3.1e-19 69.1 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L5 DUF2862 PF11061.8 gi|307594425|ref|YP_003900742.1| - 0.024 14.4 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2862) Sugar_tr PF00083.24 gi|307594426|ref|YP_003900743.1| - 1.3e-46 159.4 23.3 1.8e-46 158.9 23.3 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|307594426|ref|YP_003900743.1| - 1.8e-26 92.9 34.2 1.8e-26 92.9 34.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_4 PF06779.14 gi|307594426|ref|YP_003900743.1| - 0.00081 18.8 7.8 0.00081 18.8 7.8 2.1 2 0 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 gi|307594426|ref|YP_003900743.1| - 0.008 15.1 19.4 0.063 12.1 0.2 3.1 2 2 1 3 3 3 2 MFS_1 like family DUF1129 PF06570.11 gi|307594426|ref|YP_003900743.1| - 0.015 14.8 0.5 0.015 14.8 0.5 3.4 3 1 2 5 5 5 0 Protein of unknown function (DUF1129) HTH_35 PF13693.6 gi|307594426|ref|YP_003900743.1| - 0.16 12.0 0.0 7.7 6.6 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF86 PF01934.17 gi|307594427|ref|YP_003900744.1| - 1.7e-16 60.1 1.2 2.1e-16 59.9 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|307594428|ref|YP_003900745.1| - 3e-14 52.9 0.2 4e-14 52.5 0.2 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|307594428|ref|YP_003900745.1| - 0.0071 16.6 0.9 0.012 15.9 0.9 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Asp_protease_2 PF13650.6 gi|307594429|ref|YP_003900746.1| - 5.3e-08 33.4 0.5 6.9e-08 33.0 0.5 1.3 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|307594429|ref|YP_003900746.1| - 5.7e-08 33.2 0.4 7.6e-08 32.8 0.4 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|307594429|ref|YP_003900746.1| - 0.0023 18.2 0.1 0.0038 17.5 0.1 1.4 1 1 0 1 1 1 1 Retroviral aspartyl protease DUF257 PF03192.13 gi|307594429|ref|YP_003900746.1| - 0.011 15.5 0.1 0.013 15.3 0.1 1.2 1 0 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 Spuma_A9PTase PF03539.14 gi|307594429|ref|YP_003900746.1| - 0.037 14.2 0.0 0.043 13.9 0.0 1.1 1 0 0 1 1 1 0 Spumavirus aspartic protease (A9) Asp_protease PF09668.10 gi|307594429|ref|YP_003900746.1| - 0.048 13.4 0.2 0.078 12.8 0.2 1.5 1 1 0 1 1 1 0 Aspartyl protease RVP_2 PF08284.11 gi|307594429|ref|YP_003900746.1| - 0.067 13.0 0.0 0.081 12.7 0.0 1.2 1 0 0 1 1 1 0 Retroviral aspartyl protease Spc7 PF08317.11 gi|307594430|ref|YP_003900747.1| - 4.9e-05 22.4 9.2 7e-05 21.9 9.2 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF4559 PF15112.6 gi|307594430|ref|YP_003900747.1| - 0.00025 20.9 5.7 0.00033 20.4 5.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) BLOC1_2 PF10046.9 gi|307594430|ref|YP_003900747.1| - 0.0057 16.9 6.8 0.053 13.8 2.7 2.4 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 V_ATPase_I PF01496.19 gi|307594430|ref|YP_003900747.1| - 0.0064 14.5 0.1 0.0083 14.1 0.1 1.2 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family KASH_CCD PF14662.6 gi|307594430|ref|YP_003900747.1| - 0.008 16.0 10.7 0.2 11.5 13.3 2.0 2 1 0 2 2 1 1 Coiled-coil region of CCDC155 or KASH EzrA PF06160.12 gi|307594430|ref|YP_003900747.1| - 0.0088 14.3 5.7 0.013 13.7 5.7 1.3 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA MCPsignal PF00015.21 gi|307594430|ref|YP_003900747.1| - 0.0092 15.8 0.1 0.027 14.3 0.1 1.7 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|307594430|ref|YP_003900747.1| - 0.014 15.7 3.1 0.54 10.6 3.1 2.8 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) RPW8 PF05659.11 gi|307594430|ref|YP_003900747.1| - 0.018 14.8 0.8 0.97 9.1 0.2 2.3 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Exonuc_VII_L PF02601.15 gi|307594430|ref|YP_003900747.1| - 0.018 14.6 6.7 0.028 14.0 6.7 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit RNA_pol_Rpb1_1 PF04997.12 gi|307594430|ref|YP_003900747.1| - 0.019 14.3 2.0 0.024 14.0 0.3 1.9 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 1 Baculo_PEP_C PF04513.12 gi|307594430|ref|YP_003900747.1| - 0.019 15.0 2.7 2.3 8.3 2.8 2.3 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|307594430|ref|YP_003900747.1| - 0.039 14.4 2.8 0.44 11.1 0.6 2.5 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1474 PF07342.11 gi|307594430|ref|YP_003900747.1| - 0.04 14.4 2.8 1.1 9.9 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1474) TelA PF05816.11 gi|307594430|ref|YP_003900747.1| - 0.05 12.7 4.8 0.14 11.2 4.7 1.7 1 1 0 1 1 1 0 Toxic anion resistance protein (TelA) CAF-1_p150 PF11600.8 gi|307594430|ref|YP_003900747.1| - 0.051 13.3 3.0 0.081 12.6 3.0 1.4 1 0 0 1 1 1 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal DASH_Duo1 PF08651.10 gi|307594430|ref|YP_003900747.1| - 0.055 13.2 5.4 3.3 7.6 0.5 2.8 1 1 2 3 3 3 0 DASH complex subunit Duo1 DUF1664 PF07889.12 gi|307594430|ref|YP_003900747.1| - 0.056 13.5 0.7 0.056 13.5 0.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TMF_TATA_bd PF12325.8 gi|307594430|ref|YP_003900747.1| - 0.071 13.3 12.9 0.3 11.3 10.6 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding CcdA PF07362.12 gi|307594430|ref|YP_003900747.1| - 0.088 13.3 2.2 0.82 10.1 2.2 2.6 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA KxDL PF10241.9 gi|307594430|ref|YP_003900747.1| - 0.091 13.0 9.7 0.25 11.6 1.8 3.0 1 1 1 2 2 2 0 Uncharacterized conserved protein DUF16 PF01519.16 gi|307594430|ref|YP_003900747.1| - 0.099 13.1 7.4 0.4 11.2 1.1 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 LPP PF04728.13 gi|307594430|ref|YP_003900747.1| - 0.1 13.0 0.6 1.2 9.6 0.2 2.3 2 0 0 2 2 2 0 Lipoprotein leucine-zipper Taxilin PF09728.9 gi|307594430|ref|YP_003900747.1| - 0.11 11.7 11.1 0.41 9.8 2.3 2.1 1 1 1 2 2 2 0 Myosin-like coiled-coil protein AAA_13 PF13166.6 gi|307594430|ref|YP_003900747.1| - 0.11 11.1 4.1 0.15 10.7 4.1 1.1 1 0 0 1 1 1 0 AAA domain WXG100 PF06013.12 gi|307594430|ref|YP_003900747.1| - 0.11 12.7 3.3 7 7.0 0.1 3.6 1 1 2 3 3 3 0 Proteins of 100 residues with WXG FH2 PF02181.23 gi|307594430|ref|YP_003900747.1| - 0.14 11.3 5.6 0.57 9.2 1.0 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain Nup88 PF10168.9 gi|307594430|ref|YP_003900747.1| - 0.15 9.8 7.8 0.19 9.5 7.8 1.0 1 0 0 1 1 1 0 Nuclear pore component TPR_MLP1_2 PF07926.12 gi|307594430|ref|YP_003900747.1| - 0.15 12.1 13.3 0.43 10.6 6.1 2.2 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein CENP-K PF11802.8 gi|307594430|ref|YP_003900747.1| - 0.18 11.3 8.7 0.28 10.7 8.7 1.3 1 0 0 1 1 1 0 Centromere-associated protein K FUSC PF04632.12 gi|307594430|ref|YP_003900747.1| - 0.19 10.2 7.5 0.23 9.9 7.5 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF745 PF05335.13 gi|307594430|ref|YP_003900747.1| - 0.2 11.4 4.5 0.33 10.6 4.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF745) sCache_like PF16736.5 gi|307594430|ref|YP_003900747.1| - 0.22 11.6 4.2 0.16 12.0 0.9 2.0 1 1 1 2 2 2 0 Single Cache-like QWRF PF04484.12 gi|307594430|ref|YP_003900747.1| - 0.24 11.1 3.0 9.5 5.9 0.7 2.1 2 0 0 2 2 2 0 QWRF family DUF4200 PF13863.6 gi|307594430|ref|YP_003900747.1| - 0.3 11.5 10.7 9.3 6.7 10.7 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) Methyltransf_31 PF13847.6 gi|307594430|ref|YP_003900747.1| - 0.34 10.7 1.4 1.3 8.8 0.4 2.3 2 1 0 2 2 1 0 Methyltransferase domain P22_AR_C PF10548.9 gi|307594430|ref|YP_003900747.1| - 0.39 10.9 3.7 30 4.9 0.1 4.0 1 1 2 4 4 4 0 P22AR C-terminal domain FlaC_arch PF05377.11 gi|307594430|ref|YP_003900747.1| - 0.42 11.1 3.4 0.57 10.6 0.3 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF802 PF05650.11 gi|307594430|ref|YP_003900747.1| - 0.45 11.0 4.5 41 4.7 0.1 3.6 2 1 1 3 3 3 0 Domain of unknown function (DUF802) COG2 PF06148.11 gi|307594430|ref|YP_003900747.1| - 0.49 10.5 7.7 3.2 7.9 1.8 2.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 ARGLU PF15346.6 gi|307594430|ref|YP_003900747.1| - 0.51 10.2 13.2 0.74 9.7 12.1 1.8 1 1 1 2 2 2 0 Arginine and glutamate-rich 1 DHR10 PF18595.1 gi|307594430|ref|YP_003900747.1| - 0.56 10.3 16.8 0.21 11.7 3.4 2.3 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain CENP-H PF05837.12 gi|307594430|ref|YP_003900747.1| - 0.59 10.6 10.6 0.86 10.0 9.1 2.0 1 1 1 2 2 2 0 Centromere protein H (CENP-H) ALIX_LYPXL_bnd PF13949.6 gi|307594430|ref|YP_003900747.1| - 0.7 9.1 10.1 2.4 7.4 10.1 1.8 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV ING PF12998.7 gi|307594430|ref|YP_003900747.1| - 0.73 10.5 9.6 0.24 12.0 4.8 2.1 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding FapA PF03961.13 gi|307594430|ref|YP_003900747.1| - 0.75 8.3 7.6 12 4.4 7.6 2.0 1 1 0 1 1 1 0 Flagellar Assembly Protein A DUF3552 PF12072.8 gi|307594430|ref|YP_003900747.1| - 0.98 8.8 17.1 1.2 8.5 6.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Prefoldin_2 PF01920.20 gi|307594430|ref|YP_003900747.1| - 1.1 9.3 10.9 1.6 8.8 0.4 2.8 1 1 1 2 2 2 0 Prefoldin subunit XhlA PF10779.9 gi|307594430|ref|YP_003900747.1| - 1.2 9.4 10.1 2.8 8.2 0.7 2.7 2 1 0 2 2 2 0 Haemolysin XhlA Laminin_II PF06009.12 gi|307594430|ref|YP_003900747.1| - 1.5 8.8 5.7 4.1 7.4 0.7 2.3 1 1 1 2 2 2 0 Laminin Domain II Jnk-SapK_ap_N PF09744.9 gi|307594430|ref|YP_003900747.1| - 1.6 8.9 18.5 0.5 10.6 12.5 2.6 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 Serine_rich PF08824.10 gi|307594430|ref|YP_003900747.1| - 1.8 8.6 8.5 23 4.9 7.4 3.2 1 1 0 1 1 1 0 Serine rich protein interaction domain TMPIT PF07851.13 gi|307594430|ref|YP_003900747.1| - 2.2 7.5 5.5 2.7 7.2 4.3 1.6 1 1 1 2 2 2 0 TMPIT-like protein Sec34 PF04136.15 gi|307594430|ref|YP_003900747.1| - 2.3 8.1 8.8 9.3 6.1 0.4 2.5 1 1 1 2 2 2 0 Sec34-like family HMMR_N PF15905.5 gi|307594430|ref|YP_003900747.1| - 2.3 7.6 13.0 1.9 7.9 2.0 2.1 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Fib_alpha PF08702.10 gi|307594430|ref|YP_003900747.1| - 2.5 8.3 6.7 5.7 7.1 3.3 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family APG6_N PF17675.1 gi|307594430|ref|YP_003900747.1| - 2.7 8.5 15.0 8.7 6.9 13.2 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region ATG16 PF08614.11 gi|307594430|ref|YP_003900747.1| - 3.6 7.8 16.9 6.9 6.8 6.5 2.2 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) MPS2 PF17060.5 gi|307594430|ref|YP_003900747.1| - 3.9 6.7 9.7 78 2.4 9.7 2.1 1 1 0 1 1 1 0 Monopolar spindle protein 2 CHDCT2 PF08074.11 gi|307594430|ref|YP_003900747.1| - 4 7.6 8.8 14 5.8 8.4 1.8 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain Syntaxin-6_N PF09177.11 gi|307594430|ref|YP_003900747.1| - 4 8.1 8.3 20 5.8 5.1 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Rx_N PF18052.1 gi|307594430|ref|YP_003900747.1| - 4.1 7.7 7.6 0.49 10.7 0.7 2.5 1 1 1 2 2 2 0 Rx N-terminal domain Seryl_tRNA_N PF02403.22 gi|307594430|ref|YP_003900747.1| - 4.7 7.5 7.7 8.8 6.6 4.3 2.4 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Halogen_Hydrol PF10112.9 gi|307594430|ref|YP_003900747.1| - 7.6 6.5 10.0 13 5.8 1.5 2.4 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein CorA PF01544.18 gi|307594430|ref|YP_003900747.1| - 7.7 5.7 12.4 14 4.9 11.7 1.6 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein CENP-Q PF13094.6 gi|307594430|ref|YP_003900747.1| - 8.6 6.5 17.8 3.6 7.8 1.2 1.8 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit tRNA-synt_2c PF01411.19 gi|307594435|ref|YP_003900752.1| - 3.6e-11 42.3 0.0 4.9e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|307594435|ref|YP_003900752.1| - 5.8e-11 42.3 0.1 9.9e-11 41.6 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Peptidase_M20 PF01546.28 gi|307594436|ref|YP_003900753.1| - 6.6e-37 127.2 0.0 1.1e-36 126.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|307594436|ref|YP_003900753.1| - 6.2e-20 71.1 0.0 1.2e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|307594436|ref|YP_003900753.1| - 0.0029 17.3 0.0 0.0052 16.5 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M28 DUF3311 PF11755.8 gi|307594437|ref|YP_003900754.1| - 1.1e-10 41.3 9.5 1.3e-10 41.1 9.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4212 PF13937.6 gi|307594437|ref|YP_003900754.1| - 0.092 13.1 7.4 0.12 12.8 7.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) SSF PF00474.17 gi|307594438|ref|YP_003900755.1| - 5.6e-12 45.2 37.6 1.4e-10 40.6 37.6 2.7 1 1 0 1 1 1 1 Sodium:solute symporter family Herpes_US9 PF06072.11 gi|307594438|ref|YP_003900755.1| - 1.4 8.9 7.2 0.54 10.2 0.1 3.6 3 0 0 3 3 3 0 Alphaherpesvirus tegument protein US9 Aminotran_1_2 PF00155.21 gi|307594439|ref|YP_003900756.1| - 7.3e-28 97.8 0.0 9.7e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II PadR PF03551.14 gi|307594440|ref|YP_003900757.1| - 5.8e-19 67.8 0.0 8.8e-19 67.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|307594440|ref|YP_003900757.1| - 0.00029 20.6 0.0 0.0022 17.8 0.0 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|307594440|ref|YP_003900757.1| - 0.00082 19.2 0.1 0.071 13.0 0.0 2.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB RTP PF02334.16 gi|307594440|ref|YP_003900757.1| - 0.00086 19.9 0.0 0.0012 19.4 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein HTH_42 PF06224.12 gi|307594440|ref|YP_003900757.1| - 0.0013 18.3 0.0 0.0016 18.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|307594440|ref|YP_003900757.1| - 0.013 15.4 0.1 1.8 8.5 0.0 2.3 2 0 0 2 2 2 0 HTH domain DUF505 PF04458.12 gi|307594440|ref|YP_003900757.1| - 0.041 12.2 0.0 0.049 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) FUR PF01475.19 gi|307594440|ref|YP_003900757.1| - 0.12 12.5 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family AphA_like PF14557.6 gi|307594440|ref|YP_003900757.1| - 0.16 11.6 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator TFA2_Winged_2 PF18121.1 gi|307594440|ref|YP_003900757.1| - 0.17 11.6 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 TFA2 Winged helix domain 2 AAA_15 PF13175.6 gi|307594441|ref|YP_003900758.1| - 9e-06 25.6 0.0 1.1e-05 25.3 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|307594441|ref|YP_003900758.1| - 0.0012 19.3 0.0 0.002 18.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307594441|ref|YP_003900758.1| - 0.0022 17.9 0.6 0.0062 16.4 0.0 2.0 3 0 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|307594441|ref|YP_003900758.1| - 0.0023 18.5 0.0 0.0035 17.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|307594441|ref|YP_003900758.1| - 0.005 17.1 0.0 0.25 11.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF2813 PF11398.8 gi|307594441|ref|YP_003900758.1| - 0.037 13.3 0.3 0.053 12.8 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_29 PF13555.6 gi|307594441|ref|YP_003900758.1| - 0.055 13.2 0.3 0.1 12.3 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|307594441|ref|YP_003900758.1| - 0.079 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain cobW PF02492.19 gi|307594441|ref|YP_003900758.1| - 0.14 11.7 0.0 0.36 10.4 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|307594441|ref|YP_003900758.1| - 0.14 12.5 0.0 0.47 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain KTI12 PF08433.10 gi|307594441|ref|YP_003900758.1| - 0.24 10.8 0.0 0.33 10.4 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Aminotran_5 PF00266.19 gi|307594442|ref|YP_003900759.1| - 3.1e-27 95.5 0.0 4e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|307594442|ref|YP_003900759.1| - 4e-06 25.6 0.0 6.7e-06 24.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Sdh_cyt PF01127.22 gi|307594443|ref|YP_003900760.1| - 0.00073 19.6 10.6 0.001 19.1 10.6 1.3 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4405 PF14358.6 gi|307594443|ref|YP_003900760.1| - 0.02 15.5 1.4 0.02 15.5 1.4 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4405) Sex_peptide PF08138.11 gi|307594443|ref|YP_003900760.1| - 0.33 11.1 0.1 0.33 11.1 0.1 2.1 2 1 0 2 2 2 0 Sex peptide (SP) family Sdh_cyt PF01127.22 gi|307594444|ref|YP_003900761.1| - 6.1e-21 74.7 5.3 8.6e-21 74.2 5.3 1.2 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fer2_3 PF13085.6 gi|307594445|ref|YP_003900762.1| - 8.2e-34 115.9 0.0 1.7e-33 114.9 0.0 1.6 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|307594445|ref|YP_003900762.1| - 1.4e-11 44.7 1.1 1.4e-11 44.7 1.1 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307594445|ref|YP_003900762.1| - 5.1e-08 33.4 1.0 5.1e-08 33.4 1.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307594445|ref|YP_003900762.1| - 5.8e-08 32.7 0.8 5.8e-08 32.7 0.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307594445|ref|YP_003900762.1| - 6.9e-08 32.5 1.5 6.9e-08 32.5 1.5 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307594445|ref|YP_003900762.1| - 7.6e-07 29.6 1.0 7.6e-07 29.6 1.0 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307594445|ref|YP_003900762.1| - 1.3e-05 26.1 0.9 1.3e-05 26.1 0.9 2.0 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|307594445|ref|YP_003900762.1| - 0.00015 21.4 1.1 0.00015 21.4 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer2 PF00111.27 gi|307594445|ref|YP_003900762.1| - 0.00028 20.8 0.8 0.00061 19.7 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_13 PF13370.6 gi|307594445|ref|YP_003900762.1| - 0.0012 19.3 0.4 0.0012 19.3 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|307594445|ref|YP_003900762.1| - 0.0017 18.5 3.7 0.03 14.5 0.6 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307594445|ref|YP_003900762.1| - 0.0026 17.7 1.4 0.0026 17.7 1.4 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|307594445|ref|YP_003900762.1| - 0.0032 17.9 0.9 0.0032 17.9 0.9 3.0 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|307594445|ref|YP_003900762.1| - 0.0079 16.4 4.1 0.45 10.7 0.1 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307594445|ref|YP_003900762.1| - 0.013 15.5 1.0 0.013 15.5 1.0 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|307594445|ref|YP_003900762.1| - 0.45 11.3 0.1 0.45 11.3 0.1 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|307594445|ref|YP_003900762.1| - 0.89 10.4 7.0 5.6 7.9 2.9 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain HTH_3 PF01381.22 gi|307594446|ref|YP_003900763.1| - 9e-10 38.5 0.0 2e-09 37.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|307594446|ref|YP_003900763.1| - 2.3e-08 33.9 0.0 5.1e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|307594446|ref|YP_003900763.1| - 2.4e-07 31.0 0.0 5.7e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|307594446|ref|YP_003900763.1| - 0.0022 17.6 1.1 0.34 10.6 0.0 2.8 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|307594446|ref|YP_003900763.1| - 0.0089 15.8 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|307594446|ref|YP_003900763.1| - 0.025 14.1 0.1 0.11 12.0 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|307594446|ref|YP_003900763.1| - 0.034 14.0 0.0 0.085 12.8 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|307594446|ref|YP_003900763.1| - 0.059 13.3 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AAA_17 PF13207.6 gi|307594447|ref|YP_003900764.1| - 4.5e-15 56.3 0.0 6.7e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|307594447|ref|YP_003900764.1| - 6e-11 43.0 0.0 8.4e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|307594447|ref|YP_003900764.1| - 1.5e-06 28.4 0.1 2.7e-06 27.6 0.0 1.5 2 0 0 2 2 2 1 AAA domain SKI PF01202.22 gi|307594447|ref|YP_003900764.1| - 2.3e-05 24.6 0.0 3.5e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate kinase KTI12 PF08433.10 gi|307594447|ref|YP_003900764.1| - 4.6e-05 23.0 0.0 5.1e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 ADK PF00406.22 gi|307594447|ref|YP_003900764.1| - 0.00024 21.3 0.0 0.0011 19.0 0.0 1.8 1 1 0 1 1 1 1 Adenylate kinase Cytidylate_kin2 PF13189.6 gi|307594447|ref|YP_003900764.1| - 0.00053 20.2 0.3 0.0087 16.2 0.0 2.3 1 1 1 2 2 2 1 Cytidylate kinase-like family AAA_30 PF13604.6 gi|307594447|ref|YP_003900764.1| - 0.0044 16.8 0.1 0.46 10.2 0.2 2.6 1 1 1 2 2 2 1 AAA domain CoaE PF01121.20 gi|307594447|ref|YP_003900764.1| - 0.011 15.5 1.1 0.16 11.7 0.4 2.3 2 1 0 2 2 2 0 Dephospho-CoA kinase ATP_bind_2 PF03668.15 gi|307594447|ref|YP_003900764.1| - 0.025 13.9 1.6 0.24 10.7 1.6 2.1 1 1 0 1 1 1 0 P-loop ATPase protein family AAA PF00004.29 gi|307594447|ref|YP_003900764.1| - 0.041 14.3 0.1 0.1 13.0 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|307594447|ref|YP_003900764.1| - 0.055 13.1 0.1 1.7 8.2 0.2 2.3 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Hydin_ADK PF17213.3 gi|307594447|ref|YP_003900764.1| - 0.056 13.7 0.2 0.065 13.5 0.2 1.2 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain APS_kinase PF01583.20 gi|307594447|ref|YP_003900764.1| - 0.098 12.5 0.4 0.24 11.3 0.1 2.0 2 1 0 2 2 2 0 Adenylylsulphate kinase NTPase_1 PF03266.15 gi|307594447|ref|YP_003900764.1| - 0.15 12.0 2.6 1.9 8.3 1.0 2.9 1 1 2 3 3 3 0 NTPase LacI PF00356.21 gi|307594447|ref|YP_003900764.1| - 0.16 11.8 0.6 0.59 10.0 0.2 2.2 2 1 1 3 3 3 0 Bacterial regulatory proteins, lacI family AAA_22 PF13401.6 gi|307594447|ref|YP_003900764.1| - 0.18 12.1 1.2 1.3 9.3 0.9 2.4 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|307594447|ref|YP_003900764.1| - 0.31 10.2 0.5 0.55 9.4 0.5 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TRM PF02005.16 gi|307594448|ref|YP_003900765.1| - 1.4e-85 287.7 0.0 1.6e-85 287.6 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|307594448|ref|YP_003900765.1| - 6.4e-06 26.1 0.0 1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|307594448|ref|YP_003900765.1| - 0.0001 22.0 0.0 0.00015 21.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|307594448|ref|YP_003900765.1| - 0.0016 18.3 0.0 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307594448|ref|YP_003900765.1| - 0.0016 19.1 0.0 0.0027 18.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|307594448|ref|YP_003900765.1| - 0.027 14.4 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase HTH_3 PF01381.22 gi|307594449|ref|YP_003900766.1| - 2.3e-09 37.2 0.8 1e-08 35.1 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|307594449|ref|YP_003900766.1| - 3.1e-07 30.3 0.3 7.8e-07 29.0 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|307594449|ref|YP_003900766.1| - 7.8e-07 29.4 1.7 1.5e-06 28.4 0.9 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|307594449|ref|YP_003900766.1| - 2.6e-05 24.0 0.0 6.4e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|307594449|ref|YP_003900766.1| - 5.1e-05 22.9 0.2 0.00018 21.2 0.2 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|307594449|ref|YP_003900766.1| - 0.00042 20.3 0.2 0.0012 18.9 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|307594449|ref|YP_003900766.1| - 0.0017 17.9 0.0 0.0044 16.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MerR PF00376.23 gi|307594449|ref|YP_003900766.1| - 0.0017 18.0 0.2 0.0037 17.0 0.2 1.6 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 gi|307594449|ref|YP_003900766.1| - 0.0046 17.0 0.0 0.013 15.6 0.0 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein TnsD PF15978.5 gi|307594449|ref|YP_003900766.1| - 0.0053 15.8 0.0 0.0071 15.4 0.0 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_28 PF13518.6 gi|307594449|ref|YP_003900766.1| - 0.0095 16.1 0.0 0.023 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|307594449|ref|YP_003900766.1| - 0.0097 16.3 0.1 0.02 15.3 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_17 PF12728.7 gi|307594449|ref|YP_003900766.1| - 0.014 15.5 0.0 0.054 13.7 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_25 PF13413.6 gi|307594449|ref|YP_003900766.1| - 0.016 15.1 0.8 0.033 14.0 0.8 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|307594449|ref|YP_003900766.1| - 0.017 14.9 0.1 0.04 13.8 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|307594449|ref|YP_003900766.1| - 0.019 14.7 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_20 PF12840.7 gi|307594449|ref|YP_003900766.1| - 0.021 14.9 0.0 0.045 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|307594449|ref|YP_003900766.1| - 0.027 14.5 0.1 0.069 13.2 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_38 PF13936.6 gi|307594449|ref|YP_003900766.1| - 0.045 13.5 0.0 0.09 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain GP3_package PF16677.5 gi|307594449|ref|YP_003900766.1| - 0.051 13.7 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 DNA-packaging protein gp3 Sigma70_r4 PF04545.16 gi|307594449|ref|YP_003900766.1| - 0.052 13.1 0.4 0.052 13.1 0.4 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_IclR PF09339.10 gi|307594449|ref|YP_003900766.1| - 0.088 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain TetR_N PF00440.23 gi|307594449|ref|YP_003900766.1| - 0.12 12.2 0.0 0.35 10.7 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_8 PF02954.19 gi|307594449|ref|YP_003900766.1| - 0.12 12.1 0.4 0.58 10.0 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family Fibrillarin PF01269.17 gi|307594450|ref|YP_003900767.1| - 2.8e-102 340.6 0.4 3.2e-102 340.5 0.4 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|307594450|ref|YP_003900767.1| - 6.6e-06 26.0 0.0 1.4e-05 24.9 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|307594450|ref|YP_003900767.1| - 0.0017 18.1 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F GCD14 PF08704.10 gi|307594450|ref|YP_003900767.1| - 0.0017 18.1 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.18 gi|307594450|ref|YP_003900767.1| - 0.067 12.5 0.0 0.16 11.3 0.0 1.5 1 1 1 2 2 2 0 ubiE/COQ5 methyltransferase family Nop PF01798.18 gi|307594451|ref|YP_003900768.1| - 2.8e-66 223.3 0.0 5.6e-66 222.3 0.0 1.5 2 0 0 2 2 2 1 snoRNA binding domain, fibrillarin MTBP_mid PF14919.6 gi|307594451|ref|YP_003900768.1| - 0.053 12.7 0.1 0.081 12.1 0.1 1.3 1 0 0 1 1 1 0 MDM2-binding HhH-GPD PF00730.25 gi|307594451|ref|YP_003900768.1| - 0.13 12.7 0.0 0.85 10.1 0.0 2.3 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein US10 PF17617.2 gi|307594452|ref|YP_003900769.1| - 0.25 11.4 1.7 0.44 10.6 0.8 1.8 1 1 0 2 2 2 0 Viral unique short region 10 DUF2768 PF10966.8 gi|307594452|ref|YP_003900769.1| - 6 7.4 12.5 3.9 8.0 5.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2768) TauE PF01925.19 gi|307594454|ref|YP_003900771.1| - 6.9e-49 166.6 40.1 7.8e-49 166.4 40.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1304 PF06993.12 gi|307594454|ref|YP_003900771.1| - 0.031 14.3 0.2 0.031 14.3 0.2 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1304) DUF2206 PF09971.9 gi|307594454|ref|YP_003900771.1| - 0.81 8.4 7.2 1.2 7.9 7.2 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) H_PPase PF03030.16 gi|307594455|ref|YP_003900772.1| - 2.1e-215 717.2 36.3 2.4e-215 717.0 36.3 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase PAC2 PF09754.9 gi|307594456|ref|YP_003900773.1| - 0.09 12.8 0.0 0.26 11.3 0.0 1.8 1 1 0 1 1 1 0 PAC2 family Sld3_N PF18523.1 gi|307594456|ref|YP_003900773.1| - 0.13 12.4 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Sld3 N-terminal domain Peptidase_M24 PF00557.24 gi|307594457|ref|YP_003900774.1| - 1.7e-55 188.0 0.0 2.2e-55 187.6 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|307594457|ref|YP_003900774.1| - 9.6e-13 48.9 0.0 1.6e-12 48.2 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CRAL_TRIO PF00650.20 gi|307594457|ref|YP_003900774.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 CRAL/TRIO domain His_Phos_1 PF00300.22 gi|307594458|ref|YP_003900775.1| - 7.9e-38 130.1 0.0 9.4e-38 129.9 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) DUF2585 PF10755.9 gi|307594458|ref|YP_003900775.1| - 0.072 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2585) Radical_SAM PF04055.21 gi|307594460|ref|YP_003900777.1| - 3.3e-14 53.6 0.0 6.2e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|307594460|ref|YP_003900777.1| - 3.7e-06 27.3 0.0 7e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|307594460|ref|YP_003900777.1| - 0.00058 20.0 0.0 0.0047 17.1 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|307594460|ref|YP_003900777.1| - 0.0066 16.9 0.0 0.016 15.7 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|307594461|ref|YP_003900778.1| - 8e-25 88.1 0.1 2.1e-24 86.8 0.1 1.7 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|307594461|ref|YP_003900778.1| - 4.7e-11 43.0 0.2 1e-10 42.0 0.2 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|307594461|ref|YP_003900778.1| - 5.2e-09 36.5 0.1 1.3e-08 35.2 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|307594461|ref|YP_003900778.1| - 5.6e-09 36.2 0.0 1.1e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Beta-Casp PF10996.8 gi|307594462|ref|YP_003900779.1| - 4.2e-14 52.8 0.0 8.5e-14 51.8 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|307594462|ref|YP_003900779.1| - 7.6e-13 48.9 0.1 2e-12 47.5 0.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|307594462|ref|YP_003900779.1| - 7.5e-12 45.1 0.0 1.3e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|307594462|ref|YP_003900779.1| - 5.7e-11 42.2 0.3 1.5e-10 40.8 0.1 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|307594462|ref|YP_003900779.1| - 3.6e-10 39.7 0.0 6.1e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DRMBL PF07522.14 gi|307594462|ref|YP_003900779.1| - 0.19 11.9 0.0 0.31 11.3 0.0 1.3 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase TIP49 PF06068.13 gi|307594463|ref|YP_003900780.1| - 4.5e-130 433.9 0.0 6.2e-130 433.5 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|307594463|ref|YP_003900780.1| - 3.9e-24 84.5 0.6 3.2e-23 81.6 0.6 2.3 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|307594463|ref|YP_003900780.1| - 5.6e-11 43.0 0.1 5.9e-08 33.2 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|307594463|ref|YP_003900780.1| - 1e-08 35.7 0.1 1.6e-07 31.9 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|307594463|ref|YP_003900780.1| - 1.4e-08 34.7 0.1 5.5e-05 23.0 0.0 3.1 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|307594463|ref|YP_003900780.1| - 0.00023 21.4 0.0 0.073 13.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|307594463|ref|YP_003900780.1| - 0.00032 20.1 0.0 0.00074 18.9 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain Sigma54_activat PF00158.26 gi|307594463|ref|YP_003900780.1| - 0.00034 20.4 0.1 0.098 12.4 0.0 2.8 3 0 0 3 3 3 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|307594463|ref|YP_003900780.1| - 0.00041 19.8 0.1 0.0014 18.0 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|307594463|ref|YP_003900780.1| - 0.00058 19.9 0.1 0.016 15.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|307594463|ref|YP_003900780.1| - 0.00086 18.9 0.1 0.063 12.8 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|307594463|ref|YP_003900780.1| - 0.0032 17.1 0.0 0.0056 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|307594463|ref|YP_003900780.1| - 0.0048 16.8 0.1 0.071 13.0 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 gi|307594463|ref|YP_003900780.1| - 0.0059 16.8 0.0 0.012 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|307594463|ref|YP_003900780.1| - 0.0059 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|307594463|ref|YP_003900780.1| - 0.0063 16.8 0.2 0.056 13.7 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_11 PF13086.6 gi|307594463|ref|YP_003900780.1| - 0.038 13.8 0.1 0.096 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|307594463|ref|YP_003900780.1| - 0.05 12.9 0.0 0.099 11.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DUF3525 PF12039.8 gi|307594463|ref|YP_003900780.1| - 0.072 11.8 0.0 0.16 10.6 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3525) AAA_18 PF13238.6 gi|307594463|ref|YP_003900780.1| - 0.08 13.5 0.0 0.2 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|307594463|ref|YP_003900780.1| - 0.087 13.2 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|307594463|ref|YP_003900780.1| - 0.093 13.2 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter PhoH PF02562.16 gi|307594463|ref|YP_003900780.1| - 0.094 12.2 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_24 PF13479.6 gi|307594463|ref|YP_003900780.1| - 0.1 12.3 0.0 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|307594463|ref|YP_003900780.1| - 0.14 11.4 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|307594463|ref|YP_003900780.1| - 0.54 10.6 4.6 2.3 8.6 2.1 2.6 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|307594463|ref|YP_003900780.1| - 1.6 8.4 4.5 1.1 9.0 0.1 2.7 4 0 0 4 4 4 0 AAA domain PhoU_div PF01865.16 gi|307594465|ref|YP_003900782.1| - 1.6e-20 73.4 8.6 2e-20 73.1 8.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 DUF2480 PF10652.9 gi|307594465|ref|YP_003900782.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2480) DUF3361 PF11841.8 gi|307594465|ref|YP_003900782.1| - 0.25 11.3 2.7 0.53 10.2 0.6 2.3 1 1 2 3 3 3 0 Domain of unknown function (DUF3361) PhoU PF01895.19 gi|307594465|ref|YP_003900782.1| - 0.72 10.4 11.1 2.8 8.5 3.0 2.6 2 1 0 2 2 2 0 PhoU domain TSNAXIP1_N PF15739.5 gi|307594465|ref|YP_003900782.1| - 0.83 10.1 4.5 0.73 10.2 0.7 2.2 2 0 0 2 2 2 0 Translin-associated factor X-interacting N-terminus HAD_2 PF13419.6 gi|307594466|ref|YP_003900783.1| - 2.9e-20 73.1 0.0 4.3e-20 72.5 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|307594466|ref|YP_003900783.1| - 1.1e-14 55.2 0.0 3e-14 53.8 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|307594466|ref|YP_003900783.1| - 1.9e-10 40.6 0.1 3.2e-10 39.9 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|307594466|ref|YP_003900783.1| - 0.00092 19.7 0.2 0.0026 18.2 0.1 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|307594466|ref|YP_003900783.1| - 0.084 13.0 0.0 3.4 7.8 0.0 2.7 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Robl_LC7 PF03259.17 gi|307594467|ref|YP_003900784.1| - 4.7e-06 26.3 0.2 6.1e-06 25.9 0.2 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|307594467|ref|YP_003900784.1| - 1.7e-05 24.6 0.0 1.9e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting LAMTOR5 PF16672.5 gi|307594467|ref|YP_003900784.1| - 0.057 13.4 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 Ragulator complex protein LAMTOR5 Ald_Xan_dh_C2 PF02738.18 gi|307594468|ref|YP_003900785.1| - 4.3e-116 388.5 0.1 5e-114 381.7 0.1 2.0 1 1 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|307594468|ref|YP_003900785.1| - 8.3e-16 58.3 0.0 1.8e-15 57.3 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Cas9_PI PF16595.5 gi|307594469|ref|YP_003900786.1| - 0.023 14.6 0.3 0.029 14.3 0.3 1.1 1 0 0 1 1 1 0 PAM-interacting domain of CRISPR-associated endonuclease Cas9 DUF148 PF02520.17 gi|307594469|ref|YP_003900786.1| - 0.03 14.4 0.2 0.82 9.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF148 MMPL PF03176.15 gi|307594472|ref|YP_003900789.1| - 1.6e-68 231.1 35.6 1.3e-44 152.6 14.8 2.2 2 0 0 2 2 2 2 MMPL family Hamartin PF04388.12 gi|307594472|ref|YP_003900789.1| - 0.064 11.9 0.7 0.38 9.4 0.2 1.9 2 0 0 2 2 2 0 Hamartin protein ABC_tran PF00005.27 gi|307594473|ref|YP_003900790.1| - 2e-32 112.5 0.0 3.4e-32 111.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307594473|ref|YP_003900790.1| - 5.7e-07 29.6 0.0 0.0058 16.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307594473|ref|YP_003900790.1| - 0.0004 19.9 0.1 0.14 11.6 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|307594473|ref|YP_003900790.1| - 0.002 17.8 0.2 0.0043 16.8 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|307594473|ref|YP_003900790.1| - 0.0024 18.2 0.3 0.019 15.2 0.3 2.4 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|307594473|ref|YP_003900790.1| - 0.0042 16.7 0.1 0.016 14.8 0.0 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|307594473|ref|YP_003900790.1| - 0.0062 16.9 0.0 0.011 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|307594473|ref|YP_003900790.1| - 0.0074 16.2 0.1 0.015 15.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase T2SSE PF00437.20 gi|307594473|ref|YP_003900790.1| - 0.012 14.7 0.5 0.026 13.6 0.3 1.6 1 1 0 2 2 2 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|307594473|ref|YP_003900790.1| - 0.013 15.2 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|307594473|ref|YP_003900790.1| - 0.023 14.6 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_25 PF13481.6 gi|307594473|ref|YP_003900790.1| - 0.027 14.0 0.2 0.095 12.3 0.0 1.9 3 0 0 3 3 3 0 AAA domain AAA_13 PF13166.6 gi|307594473|ref|YP_003900790.1| - 0.028 13.1 0.2 5 5.6 0.1 2.1 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|307594473|ref|YP_003900790.1| - 0.11 12.2 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|307594473|ref|YP_003900790.1| - 0.13 12.2 0.4 5.9 6.8 0.2 2.6 1 1 0 2 2 2 0 NTPase AAA_23 PF13476.6 gi|307594473|ref|YP_003900790.1| - 0.14 12.7 0.7 0.56 10.7 0.3 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|307594473|ref|YP_003900790.1| - 0.15 11.8 0.1 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|307594473|ref|YP_003900790.1| - 0.18 11.7 0.7 0.6 10.0 0.1 2.0 1 1 1 2 2 2 0 NACHT domain HBM PF16591.5 gi|307594474|ref|YP_003900791.1| - 0.0026 17.2 5.2 0.0037 16.7 2.2 2.1 1 1 1 2 2 2 1 Helical bimodular sensor domain Med9 PF07544.13 gi|307594474|ref|YP_003900791.1| - 0.0062 16.6 0.3 0.72 10.0 0.0 2.6 2 0 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 SesA PF17107.5 gi|307594474|ref|YP_003900791.1| - 0.012 15.8 0.4 0.1 12.8 0.2 2.3 2 0 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Prefoldin PF02996.17 gi|307594474|ref|YP_003900791.1| - 0.073 13.0 3.0 5.8 6.8 0.0 3.1 2 1 0 2 2 2 0 Prefoldin subunit FliJ PF02050.16 gi|307594474|ref|YP_003900791.1| - 0.16 12.2 2.3 18 5.5 1.2 2.7 2 0 0 2 2 2 0 Flagellar FliJ protein YlbD_coat PF14071.6 gi|307594474|ref|YP_003900791.1| - 0.56 10.5 4.0 2.7 8.3 1.4 2.3 2 0 0 2 2 2 0 Putative coat protein FIVAR PF07554.13 gi|307594474|ref|YP_003900791.1| - 0.58 11.0 19.3 6.6 7.6 2.9 3.8 3 0 0 3 3 3 0 FIVAR domain DHR10 PF18595.1 gi|307594474|ref|YP_003900791.1| - 0.91 9.6 2.5 5.7 7.0 1.1 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain GTP_cyclohydroI PF01227.22 gi|307594475|ref|YP_003900792.1| - 6.9e-48 162.4 0.0 8.5e-48 162.1 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I RNA_binding PF01877.17 gi|307594476|ref|YP_003900793.1| - 1.5e-31 109.2 0.0 1.8e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 RNA binding ILVD_EDD PF00920.21 gi|307594477|ref|YP_003900794.1| - 1.1e-211 704.0 0.1 1.2e-211 703.8 0.1 1.0 1 0 0 1 1 1 1 Dehydratase family MazE_antitoxin PF04014.18 gi|307594477|ref|YP_003900794.1| - 0.28 11.2 3.0 7.9 6.5 0.0 3.2 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin PBP PF01161.20 gi|307594478|ref|YP_003900795.1| - 1.2e-38 132.4 0.0 1.4e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ABC2_membrane PF01061.24 gi|307594479|ref|YP_003900796.1| - 1.4e-32 112.9 21.4 1.4e-32 112.9 21.4 2.1 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|307594479|ref|YP_003900796.1| - 2.1e-14 53.4 22.9 2.1e-14 53.4 22.9 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|307594479|ref|YP_003900796.1| - 0.00016 21.7 7.6 0.00016 21.7 7.6 2.7 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|307594479|ref|YP_003900796.1| - 0.00041 19.7 27.9 0.0068 15.7 27.9 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|307594479|ref|YP_003900796.1| - 0.0013 18.4 15.5 0.0013 18.4 15.5 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein DNA_ligase_C PF17879.1 gi|307594479|ref|YP_003900796.1| - 0.0074 16.3 0.1 0.015 15.4 0.1 1.4 1 0 0 1 1 1 1 DNA ligase C-terminal domain EMP70 PF02990.16 gi|307594479|ref|YP_003900796.1| - 0.66 8.6 10.2 0.095 11.3 0.3 2.2 1 1 1 2 2 2 0 Endomembrane protein 70 ABC_tran PF00005.27 gi|307594480|ref|YP_003900797.1| - 1.8e-31 109.5 0.0 2.9e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter DUF4162 PF13732.6 gi|307594480|ref|YP_003900797.1| - 1.4e-13 51.3 0.4 2.9e-13 50.3 0.2 1.7 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|307594480|ref|YP_003900797.1| - 1.1e-09 38.6 0.1 1.1e-05 25.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|307594480|ref|YP_003900797.1| - 0.001 19.6 0.4 0.0021 18.6 0.4 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|307594480|ref|YP_003900797.1| - 0.0074 16.0 0.0 2.1 8.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SRP54 PF00448.22 gi|307594480|ref|YP_003900797.1| - 0.033 13.8 0.2 0.087 12.4 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|307594480|ref|YP_003900797.1| - 0.06 12.9 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|307594480|ref|YP_003900797.1| - 0.06 13.3 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|307594480|ref|YP_003900797.1| - 0.099 12.4 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|307594480|ref|YP_003900797.1| - 0.1 13.0 0.9 0.68 10.4 0.3 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|307594480|ref|YP_003900797.1| - 0.11 12.2 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|307594480|ref|YP_003900797.1| - 0.11 11.9 0.0 5.6 6.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain CxxCxxCC PF03692.15 gi|307594481|ref|YP_003900798.1| - 6.5e-09 36.4 0.1 1.2e-08 35.5 0.1 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HAD_2 PF13419.6 gi|307594482|ref|YP_003900799.1| - 5.1e-14 52.7 0.0 1.3e-13 51.4 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|307594482|ref|YP_003900799.1| - 6.5e-07 29.9 0.0 3.3e-06 27.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|307594482|ref|YP_003900799.1| - 0.094 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like Staygreen PF12638.7 gi|307594482|ref|YP_003900799.1| - 0.13 12.0 0.0 0.63 9.8 0.0 1.9 2 0 0 2 2 2 0 Staygreen protein GCH_III PF05165.12 gi|307594483|ref|YP_003900800.1| - 2.9e-39 134.8 0.0 6.9e-39 133.6 0.0 1.5 1 1 0 1 1 1 1 GTP cyclohydrolase III HTH_24 PF13412.6 gi|307594484|ref|YP_003900801.1| - 2.3e-08 33.5 0.0 4.3e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|307594484|ref|YP_003900801.1| - 5e-07 29.5 0.1 1.6e-06 27.9 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|307594484|ref|YP_003900801.1| - 2.5e-06 27.3 0.0 9.2e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|307594484|ref|YP_003900801.1| - 5.2e-05 23.1 0.0 0.00016 21.6 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|307594484|ref|YP_003900801.1| - 0.0013 18.8 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|307594484|ref|YP_003900801.1| - 0.003 17.3 0.0 0.0059 16.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|307594484|ref|YP_003900801.1| - 0.0048 17.4 0.0 0.022 15.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|307594484|ref|YP_003900801.1| - 0.0096 15.8 0.0 0.022 14.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|307594484|ref|YP_003900801.1| - 0.014 15.5 0.0 0.031 14.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|307594484|ref|YP_003900801.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 HTH domain RNA_pol_Rpc34 PF05158.12 gi|307594484|ref|YP_003900801.1| - 0.028 13.8 0.8 0.042 13.2 0.0 1.6 2 0 0 2 2 2 0 RNA polymerase Rpc34 subunit Fe_dep_repress PF01325.19 gi|307594484|ref|YP_003900801.1| - 0.056 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.27 gi|307594484|ref|YP_003900801.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family z-alpha PF02295.17 gi|307594484|ref|YP_003900801.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain GntR PF00392.21 gi|307594484|ref|YP_003900801.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4083 PF13314.6 gi|307594484|ref|YP_003900801.1| - 0.18 11.7 1.2 0.52 10.3 1.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) PsbX PF06596.11 gi|307594484|ref|YP_003900801.1| - 5.4 7.1 6.9 0.91 9.6 2.3 2.0 2 0 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) Spore_YpjB PF09577.10 gi|307594485|ref|YP_003900802.1| - 0.0099 15.7 0.4 0.02 14.7 0.3 1.5 1 1 0 1 1 1 1 Sporulation protein YpjB (SpoYpjB) DUF3347 PF11827.8 gi|307594485|ref|YP_003900802.1| - 0.051 13.8 0.3 0.1 12.8 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3347) CSTF2_hinge PF14327.6 gi|307594485|ref|YP_003900802.1| - 0.059 13.8 0.5 0.059 13.8 0.5 2.3 2 1 1 3 3 3 0 Hinge domain of cleavage stimulation factor subunit 2 HAD_2 PF13419.6 gi|307594486|ref|YP_003900803.1| - 4.5e-06 26.9 0.0 2.1e-05 24.7 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|307594486|ref|YP_003900803.1| - 0.00014 22.3 0.1 0.00021 21.8 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|307594486|ref|YP_003900803.1| - 0.00056 20.2 0.0 0.0036 17.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|307594486|ref|YP_003900803.1| - 0.003 17.7 0.1 0.013 15.6 0.1 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|307594486|ref|YP_003900803.1| - 0.0049 16.7 0.1 0.35 10.6 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase VKOR PF07884.14 gi|307594487|ref|YP_003900804.1| - 2.3e-25 89.1 12.4 2.8e-25 88.9 12.4 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family PBP_like PF12727.7 gi|307594488|ref|YP_003900805.1| - 3e-63 212.5 0.0 5.4e-63 211.6 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|307594488|ref|YP_003900805.1| - 1.1e-44 152.0 0.4 1.7e-44 151.3 0.4 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|307594488|ref|YP_003900805.1| - 4.4e-27 94.5 0.1 1e-26 93.3 0.1 1.7 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|307594488|ref|YP_003900805.1| - 3.4e-16 59.2 1.1 2.3e-15 56.5 0.0 2.7 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|307594488|ref|YP_003900805.1| - 1.8e-08 34.4 0.0 3.6e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.20 gi|307594488|ref|YP_003900805.1| - 0.025 14.0 0.0 0.16 11.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|307594488|ref|YP_003900805.1| - 0.056 13.0 0.0 0.098 12.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein IF2_N PF04760.15 gi|307594488|ref|YP_003900805.1| - 0.12 12.2 0.1 0.28 11.0 0.1 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region AMP-binding PF00501.28 gi|307594489|ref|YP_003900806.1| - 1.4e-76 257.8 0.0 1.8e-76 257.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|307594489|ref|YP_003900806.1| - 3.1e-13 50.5 0.0 5.8e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACP_syn_III_C PF08541.10 gi|307594489|ref|YP_003900806.1| - 0.14 12.4 0.0 0.52 10.5 0.0 1.9 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMP-binding PF00501.28 gi|307594490|ref|YP_003900807.1| - 1.7e-72 244.3 0.0 2e-72 244.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|307594490|ref|YP_003900807.1| - 1.2e-16 61.4 1.7 9.9e-16 58.5 0.6 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|307594490|ref|YP_003900807.1| - 2.5e-14 52.9 0.3 4.9e-14 52.0 0.3 1.5 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Glu_synthase PF01645.17 gi|307594491|ref|YP_003900808.1| - 4.4e-22 78.7 12.9 5.9e-20 71.7 10.0 3.6 1 1 1 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|307594491|ref|YP_003900808.1| - 2.3e-20 72.9 4.9 1.3e-14 54.0 2.4 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|307594491|ref|YP_003900808.1| - 7.3e-07 28.9 0.8 1.2e-06 28.1 0.8 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase UbiA PF01040.18 gi|307594492|ref|YP_003900809.1| - 1.5e-26 93.3 27.8 1.5e-26 93.3 27.8 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family Cyt_c_ox_IV PF12270.8 gi|307594492|ref|YP_003900809.1| - 0.0049 17.0 1.7 0.0049 17.0 1.7 2.9 2 1 1 3 3 3 1 Cytochrome c oxidase subunit IV ATP-synt_F PF01990.17 gi|307594493|ref|YP_003900810.1| - 3.4e-17 62.5 0.1 4e-17 62.3 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit CarS-like PF01864.17 gi|307594494|ref|YP_003900811.1| - 1e-44 152.6 3.0 1.2e-44 152.3 3.0 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|307594494|ref|YP_003900811.1| - 4.4e-06 26.7 2.2 4.4e-06 26.7 0.1 1.8 2 0 0 2 2 2 1 Cytidylyltransferase family DUF92 PF01940.16 gi|307594494|ref|YP_003900811.1| - 0.084 12.3 0.5 0.16 11.4 0.5 1.4 1 0 0 1 1 1 0 Integral membrane protein DUF92 zf-C2H2_4 PF13894.6 gi|307594495|ref|YP_003900812.1| - 4.6e-11 42.6 7.4 0.031 15.1 0.1 4.1 4 0 0 4 4 4 3 C2H2-type zinc finger zf-Di19 PF05605.12 gi|307594495|ref|YP_003900812.1| - 1.6e-10 41.1 4.4 1.3e-06 28.6 0.2 3.1 3 0 0 3 3 3 2 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.6 gi|307594495|ref|YP_003900812.1| - 1.4e-08 34.8 7.3 0.2 12.1 0.0 4.4 4 0 0 4 4 4 2 Zinc-finger double domain zf-met PF12874.7 gi|307594495|ref|YP_003900812.1| - 9.5e-07 29.0 6.6 0.00054 20.3 0.0 3.5 4 0 0 4 4 3 2 Zinc-finger of C2H2 type zf-C2H2 PF00096.26 gi|307594495|ref|YP_003900812.1| - 3e-06 27.4 13.2 0.097 13.2 0.2 4.4 4 1 0 4 4 4 3 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.8 gi|307594495|ref|YP_003900812.1| - 4.4e-06 26.8 6.0 0.047 14.0 0.0 3.9 4 0 0 4 4 4 2 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 gi|307594495|ref|YP_003900812.1| - 3.1e-05 24.2 4.9 0.25 11.7 0.2 3.5 1 1 3 4 4 4 2 C2H2 type zinc-finger (2 copies) DZR PF12773.7 gi|307594495|ref|YP_003900812.1| - 3.4e-05 23.8 2.2 0.25 11.4 0.0 2.7 2 1 0 2 2 2 2 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|307594495|ref|YP_003900812.1| - 8.1e-05 23.3 1.0 0.022 15.5 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon family zf-BED PF02892.15 gi|307594495|ref|YP_003900812.1| - 0.00058 19.8 8.2 2.6 8.2 0.2 3.9 4 0 0 4 4 4 2 BED zinc finger Sgf11 PF08209.11 gi|307594495|ref|YP_003900812.1| - 0.001 18.6 7.3 0.017 14.7 0.1 3.9 4 0 0 4 4 4 1 Sgf11 (transcriptional regulation protein) zf_UBZ PF18439.1 gi|307594495|ref|YP_003900812.1| - 0.0029 17.2 5.8 0.35 10.5 0.0 3.6 4 0 0 4 4 3 1 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|307594495|ref|YP_003900812.1| - 0.0033 17.5 7.7 0.14 12.3 2.0 3.6 3 1 1 4 4 4 1 Zinc ribbon domain zf-Sec23_Sec24 PF04810.15 gi|307594495|ref|YP_003900812.1| - 0.0049 16.9 3.8 0.44 10.6 1.3 3.4 3 1 0 3 3 3 1 Sec23/Sec24 zinc finger zinc-ribbons_6 PF07191.12 gi|307594495|ref|YP_003900812.1| - 0.0088 16.0 3.9 0.19 11.7 2.3 2.9 2 1 0 2 2 2 1 zinc-ribbons Jas PF16135.5 gi|307594495|ref|YP_003900812.1| - 0.0097 16.1 1.1 0.44 10.8 0.1 2.3 2 0 0 2 2 2 1 TPL-binding domain in jasmonate signalling zinc_ribbon_9 PF14369.6 gi|307594495|ref|YP_003900812.1| - 0.011 16.0 2.0 21 5.5 0.0 3.8 4 0 0 4 4 4 0 zinc-ribbon Elf1 PF05129.13 gi|307594495|ref|YP_003900812.1| - 0.021 14.9 6.7 0.18 11.8 1.1 3.0 1 1 2 3 3 3 0 Transcription elongation factor Elf1 like Prok-RING_1 PF14446.6 gi|307594495|ref|YP_003900812.1| - 0.028 14.3 7.5 21 5.2 0.1 4.0 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 PRP21_like_P PF12230.8 gi|307594495|ref|YP_003900812.1| - 0.036 13.9 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein zf-CpG_bind_C PF12269.8 gi|307594495|ref|YP_003900812.1| - 0.041 13.6 3.6 3.6 7.3 0.6 2.5 1 1 2 3 3 3 0 CpG binding protein zinc finger C terminal domain zinc_ribbon_2 PF13240.6 gi|307594495|ref|YP_003900812.1| - 0.045 13.5 0.3 0.045 13.5 0.3 3.5 4 0 0 4 4 4 0 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|307594495|ref|YP_003900812.1| - 0.057 13.1 6.6 0.59 9.8 0.4 3.0 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-DNA_Pol PF08996.10 gi|307594495|ref|YP_003900812.1| - 0.09 12.5 0.3 0.13 12.0 0.3 1.3 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Stc1 PF12898.7 gi|307594495|ref|YP_003900812.1| - 0.1 13.2 1.6 0.66 10.6 1.4 2.2 1 1 0 1 1 1 0 Stc1 domain Zn_ribbon_SprT PF17283.2 gi|307594495|ref|YP_003900812.1| - 0.11 12.4 7.9 1.5 8.8 0.0 3.8 3 1 0 3 3 3 0 SprT-like zinc ribbon domain zf-CHY PF05495.12 gi|307594495|ref|YP_003900812.1| - 0.14 12.7 2.1 4.9 7.7 1.3 2.6 1 1 1 2 2 2 0 CHY zinc finger DUF1815 PF08844.10 gi|307594495|ref|YP_003900812.1| - 0.15 12.1 0.5 29 4.7 0.0 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF1815) Ribosomal_L37ae PF01780.19 gi|307594495|ref|YP_003900812.1| - 0.15 12.2 2.4 22 5.2 0.0 3.0 1 1 1 2 2 2 0 Ribosomal L37ae protein family Actin_micro PF17003.5 gi|307594495|ref|YP_003900812.1| - 0.15 11.2 4.7 6.5 5.8 1.0 3.1 1 1 1 2 2 2 0 Putative actin-like family OrfB_Zn_ribbon PF07282.11 gi|307594495|ref|YP_003900812.1| - 0.16 11.9 3.8 0.77 9.7 0.1 2.8 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Zn_ribbon_recom PF13408.6 gi|307594495|ref|YP_003900812.1| - 0.24 11.9 7.6 0.3 11.6 0.8 3.2 2 1 2 4 4 4 0 Recombinase zinc beta ribbon domain zf-RING_7 PF02591.15 gi|307594495|ref|YP_003900812.1| - 0.24 11.6 3.8 19 5.5 0.0 3.5 4 0 0 4 4 3 0 C4-type zinc ribbon domain zf-C2H2_9 PF16293.5 gi|307594495|ref|YP_003900812.1| - 0.3 11.0 3.2 47 3.9 0.0 3.6 4 0 0 4 4 4 0 C2H2 type zinc-finger (1 copy) Vps36-NZF-N PF16988.5 gi|307594495|ref|YP_003900812.1| - 0.32 10.4 5.3 0.68 9.4 0.1 2.7 2 1 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain DUF951 PF06107.11 gi|307594495|ref|YP_003900812.1| - 0.43 10.5 3.4 8.5 6.4 0.1 2.7 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF951) CpXC PF14353.6 gi|307594495|ref|YP_003900812.1| - 0.67 10.0 6.6 7.9 6.6 1.2 3.4 2 2 0 2 2 2 0 CpXC protein zf-C4_Topoisom PF01396.19 gi|307594495|ref|YP_003900812.1| - 0.67 9.8 7.0 2.1 8.2 0.3 3.7 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|307594495|ref|YP_003900812.1| - 0.85 10.3 5.7 1 10.1 1.9 2.8 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.12 gi|307594495|ref|YP_003900812.1| - 0.85 9.2 9.1 2.4 7.7 0.1 3.5 4 0 0 4 4 4 0 TFIIB zinc-binding zf_CopZ PF18423.1 gi|307594495|ref|YP_003900812.1| - 1.1 9.3 7.1 6.2 6.9 0.1 3.5 3 1 1 4 4 4 0 Zinc binding domain Zn_Tnp_IS1595 PF12760.7 gi|307594495|ref|YP_003900812.1| - 1.2 9.2 6.7 5.3 7.1 1.8 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|307594495|ref|YP_003900812.1| - 1.5 8.2 8.0 13 5.2 1.9 3.1 2 1 1 3 3 3 0 Transcription factor zinc-finger zf-ACC PF17848.1 gi|307594495|ref|YP_003900812.1| - 1.6 8.9 0.1 1.6 8.9 0.1 3.1 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-ribbon_3 PF13248.6 gi|307594495|ref|YP_003900812.1| - 1.6 8.2 10.6 0.44 10.0 0.3 3.7 4 0 0 4 4 4 0 zinc-ribbon domain UPF0547 PF10571.9 gi|307594495|ref|YP_003900812.1| - 1.8 8.7 6.0 2.4 8.3 0.1 2.9 3 0 0 3 3 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|307594495|ref|YP_003900812.1| - 1.9 8.5 10.1 1.8 8.6 0.1 3.5 4 0 0 4 4 4 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|307594495|ref|YP_003900812.1| - 2.2 8.3 8.7 1.6 8.8 1.1 3.3 3 1 1 4 4 4 0 PhnA Zinc-Ribbon zf-trcl PF13451.6 gi|307594495|ref|YP_003900812.1| - 2.3 8.2 5.4 45 4.0 0.1 3.2 3 0 0 3 3 3 0 Probable zinc-ribbon domain Lar_restr_allev PF14354.6 gi|307594495|ref|YP_003900812.1| - 3.5 8.1 9.9 0.33 11.4 1.3 3.1 1 1 1 3 3 3 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.10 gi|307594495|ref|YP_003900812.1| - 4.4 7.1 11.6 16 5.4 0.1 3.8 4 0 0 4 4 4 0 A2L zinc ribbon domain HNH_5 PF14279.6 gi|307594495|ref|YP_003900812.1| - 9.7 6.1 10.8 3.4 7.6 0.3 3.0 3 1 0 3 3 2 0 HNH endonuclease OB_aCoA_assoc PF01796.17 gi|307594497|ref|YP_003900814.1| - 6.5e-15 54.9 0.3 9.2e-15 54.4 0.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|307594497|ref|YP_003900814.1| - 3.7e-11 42.7 0.5 8.1e-11 41.6 0.3 1.7 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|307594497|ref|YP_003900814.1| - 0.011 15.7 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|307594497|ref|YP_003900814.1| - 0.029 15.1 0.2 0.041 14.6 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|307594497|ref|YP_003900814.1| - 1.1 8.8 8.0 3.6 7.1 6.8 2.3 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|307594497|ref|YP_003900814.1| - 9.7 6.1 10.2 75 3.2 10.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain OB_aCoA_assoc PF01796.17 gi|307594498|ref|YP_003900815.1| - 4.4e-12 45.8 1.6 6.1e-12 45.4 1.6 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|307594498|ref|YP_003900815.1| - 1.8e-05 24.5 0.1 2.5e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|307594498|ref|YP_003900815.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon Rad50_zn_hook PF04423.14 gi|307594498|ref|YP_003900815.1| - 0.19 11.6 0.1 0.35 10.7 0.1 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C6H2 PF15801.5 gi|307594498|ref|YP_003900815.1| - 0.22 11.9 0.2 0.33 11.3 0.2 1.2 1 0 0 1 1 1 0 zf-MYND-like zinc finger, mRNA-binding Ribosomal_S3_C PF00189.20 gi|307594499|ref|YP_003900816.1| - 1.1e-20 74.0 1.3 2e-20 73.1 1.3 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|307594499|ref|YP_003900816.1| - 2.8e-09 36.6 0.4 7.8e-09 35.2 0.1 1.9 2 0 0 2 2 2 1 KH domain Ribosomal_L29 PF00831.23 gi|307594500|ref|YP_003900817.1| - 2.4e-17 62.6 2.9 3.3e-17 62.2 2.9 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF2299 PF10061.9 gi|307594500|ref|YP_003900817.1| - 0.007 16.1 0.3 0.0074 16.0 0.3 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) DnaB_bind PF10410.9 gi|307594500|ref|YP_003900817.1| - 0.013 15.7 1.6 1.2 9.3 0.3 2.2 1 1 1 2 2 2 0 DnaB-helicase binding domain of primase MgtE_N PF03448.17 gi|307594500|ref|YP_003900817.1| - 0.041 14.5 0.1 0.91 10.2 0.0 2.1 2 0 0 2 2 2 0 MgtE intracellular N domain Rad50_zn_hook PF04423.14 gi|307594500|ref|YP_003900817.1| - 0.055 13.3 0.6 0.1 12.5 0.6 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif Spectrin_like PF18373.1 gi|307594500|ref|YP_003900817.1| - 0.14 12.2 0.2 0.31 11.1 0.1 1.6 2 0 0 2 2 2 0 Spectrin like domain UPF0086 PF01868.16 gi|307594501|ref|YP_003900818.1| - 1e-11 44.6 0.2 1.2e-11 44.4 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 vATP-synt_E PF01991.18 gi|307594502|ref|YP_003900819.1| - 1.8e-13 50.4 6.5 3.4e-13 49.4 6.5 1.5 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HK97-gp10_like PF04883.12 gi|307594502|ref|YP_003900819.1| - 0.013 16.5 0.1 0.041 14.9 0.1 2.0 2 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component RGS PF00615.19 gi|307594502|ref|YP_003900819.1| - 0.061 13.6 0.1 0.099 12.9 0.1 1.4 1 0 0 1 1 1 0 Regulator of G protein signaling domain Ubiquitin_3 PF14836.6 gi|307594502|ref|YP_003900819.1| - 0.071 13.1 0.2 0.22 11.5 0.2 1.9 1 0 0 1 1 1 0 Ubiquitin-like domain CPSase_sm_chain PF00988.22 gi|307594502|ref|YP_003900819.1| - 0.082 12.7 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase small chain, CPSase domain ATP-synt_ab PF00006.25 gi|307594503|ref|YP_003900820.1| - 4.8e-79 264.9 0.0 6.3e-79 264.5 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|307594503|ref|YP_003900820.1| - 1.2e-41 141.4 0.1 2e-41 140.6 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|307594503|ref|YP_003900820.1| - 7.8e-12 45.5 0.6 2.5e-11 43.9 0.6 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|307594503|ref|YP_003900820.1| - 0.017 15.4 0.0 0.062 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain sCache_2 PF17200.4 gi|307594503|ref|YP_003900820.1| - 0.67 9.8 2.3 12 5.7 0.1 2.7 3 0 0 3 3 3 0 Single Cache domain 2 TrmB PF01978.19 gi|307594504|ref|YP_003900821.1| - 0.0043 16.9 0.5 0.0097 15.8 0.1 1.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|307594504|ref|YP_003900821.1| - 0.0069 16.3 0.0 0.048 13.7 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix Ribosomal_S19e PF01090.19 gi|307594504|ref|YP_003900821.1| - 0.0092 15.7 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_Crp_2 PF13545.6 gi|307594504|ref|YP_003900821.1| - 0.022 14.7 0.1 0.049 13.6 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|307594504|ref|YP_003900821.1| - 0.031 14.2 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 gi|307594504|ref|YP_003900821.1| - 0.032 14.0 0.1 0.067 13.0 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|307594504|ref|YP_003900821.1| - 0.068 13.5 0.1 0.16 12.3 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_12 PF08461.10 gi|307594504|ref|YP_003900821.1| - 0.11 12.5 0.7 0.22 11.5 0.7 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_41 PF14502.6 gi|307594504|ref|YP_003900821.1| - 0.19 11.5 1.2 0.83 9.4 0.1 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain tRNA-synt_1e PF01406.19 gi|307594505|ref|YP_003900822.1| - 5.4e-113 377.3 0.0 7.8e-113 376.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|307594505|ref|YP_003900822.1| - 1.5e-10 40.4 0.1 3.6e-05 22.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|307594505|ref|YP_003900822.1| - 5.3e-09 35.5 0.1 3e-05 23.1 0.0 2.8 2 1 1 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|307594505|ref|YP_003900822.1| - 1.3e-08 33.6 0.0 2.2e-07 29.5 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.11 gi|307594505|ref|YP_003900822.1| - 2.7e-08 34.1 0.8 7.8e-08 32.7 0.3 2.0 2 0 0 2 2 2 1 DALR domain Cir_Bir_Yir PF06022.11 gi|307594505|ref|YP_003900822.1| - 0.0025 17.3 0.2 0.0044 16.5 0.2 1.4 1 0 0 1 1 1 1 Plasmodium variant antigen protein Cir/Yir/Bir SOG2 PF10428.9 gi|307594505|ref|YP_003900822.1| - 0.12 11.6 0.2 0.47 9.6 0.2 1.8 1 1 0 1 1 1 0 RAM signalling pathway protein Anticodon_1 PF08264.13 gi|307594505|ref|YP_003900822.1| - 0.17 11.8 1.1 0.28 11.1 0.1 1.9 2 0 0 2 2 2 0 Anticodon-binding domain of tRNA Glyco_hydro_15 PF00723.21 gi|307594506|ref|YP_003900823.1| - 4.5e-19 68.6 1.1 2.2e-11 43.2 0.6 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.13 gi|307594506|ref|YP_003900823.1| - 2.4e-05 23.7 0.3 3.9e-05 23.0 0.3 1.2 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Bac_rhamnosid6H PF17389.2 gi|307594506|ref|YP_003900823.1| - 0.00092 18.6 0.7 0.0018 17.6 0.7 1.4 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Glyco_hydro_36 PF17167.4 gi|307594506|ref|YP_003900823.1| - 0.061 12.0 0.5 0.12 11.1 0.2 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase 36 superfamily, catalytic domain TPR_12 PF13424.6 gi|307594506|ref|YP_003900823.1| - 1.2 9.5 3.5 1.5 9.1 0.9 2.6 3 0 0 3 3 3 0 Tetratricopeptide repeat PFK PF00365.20 gi|307594507|ref|YP_003900824.1| - 9.5e-90 300.8 0.1 1.1e-89 300.6 0.1 1.0 1 0 0 1 1 1 1 Phosphofructokinase DAGK_cat PF00781.24 gi|307594507|ref|YP_003900824.1| - 0.012 15.2 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 gi|307594507|ref|YP_003900824.1| - 0.042 13.0 0.1 0.059 12.6 0.1 1.2 1 0 0 1 1 1 0 ATP-NAD kinase Glyco_transf_4 PF13439.6 gi|307594507|ref|YP_003900824.1| - 0.061 13.3 0.1 3.5 7.6 0.0 2.5 1 1 1 2 2 2 0 Glycosyltransferase Family 4 DeoC PF01791.9 gi|307594508|ref|YP_003900825.1| - 4.9e-39 134.3 0.0 5.8e-39 134.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase Creatininase PF02633.14 gi|307594509|ref|YP_003900826.1| - 1.7e-47 161.9 0.0 1.9e-47 161.8 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF309 PF03745.14 gi|307594511|ref|YP_003900828.1| - 5.1e-18 64.5 0.8 7.7e-18 63.9 0.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) SAF PF08666.12 gi|307594513|ref|YP_003900830.1| - 2.9e-18 66.2 0.3 4.4e-18 65.7 0.3 1.3 1 0 0 1 1 1 1 SAF domain NfeD PF01957.18 gi|307594513|ref|YP_003900830.1| - 0.031 14.7 0.4 4 7.9 0.2 2.2 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding Urease_beta PF00699.20 gi|307594513|ref|YP_003900830.1| - 0.16 12.0 1.0 1.7 8.7 0.2 2.1 2 0 0 2 2 2 0 Urease beta subunit RNase_II_C_S1 PF18614.1 gi|307594513|ref|YP_003900830.1| - 1.7 8.6 5.3 59 3.7 0.0 3.2 2 1 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain GD_AH_C PF04295.13 gi|307594514|ref|YP_003900831.1| - 4.1e-155 516.4 0.2 4.6e-155 516.3 0.2 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus Ligase_CoA PF00549.19 gi|307594514|ref|YP_003900831.1| - 0.071 12.9 0.3 0.3 10.9 0.1 2.2 2 0 0 2 2 2 0 CoA-ligase gag-asp_proteas PF13975.6 gi|307594515|ref|YP_003900832.1| - 0.001 19.5 0.0 0.0023 18.4 0.0 1.7 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|307594515|ref|YP_003900832.1| - 0.0013 19.3 0.0 0.0029 18.2 0.0 1.7 1 1 1 2 2 2 1 Aspartyl protease RVP PF00077.20 gi|307594515|ref|YP_003900832.1| - 0.17 12.2 0.0 0.24 11.7 0.0 1.5 1 1 0 1 1 1 0 Retroviral aspartyl protease NAD_binding_2 PF03446.15 gi|307594516|ref|YP_003900833.1| - 1.8e-52 177.7 0.6 2.6e-52 177.2 0.1 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|307594516|ref|YP_003900833.1| - 3.9e-36 124.0 0.6 5.4e-36 123.5 0.6 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|307594516|ref|YP_003900833.1| - 1.8e-07 30.7 0.0 8.4e-07 28.5 0.0 2.0 2 1 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|307594516|ref|YP_003900833.1| - 2.4e-07 31.2 0.1 1.1e-06 29.1 0.0 2.2 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|307594516|ref|YP_003900833.1| - 0.00029 20.5 0.0 0.00059 19.4 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|307594516|ref|YP_003900833.1| - 0.002 17.8 0.0 0.0031 17.2 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|307594516|ref|YP_003900833.1| - 0.0027 17.6 0.0 0.015 15.2 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|307594516|ref|YP_003900833.1| - 0.0029 17.5 0.2 0.015 15.2 0.0 2.0 2 0 0 2 2 2 1 Rossmann-like domain Shikimate_DH PF01488.20 gi|307594516|ref|YP_003900833.1| - 0.0051 16.9 0.4 0.011 15.8 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase DapB_N PF01113.20 gi|307594516|ref|YP_003900833.1| - 0.019 15.1 0.0 0.044 13.9 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|307594516|ref|YP_003900833.1| - 0.11 13.3 0.0 0.22 12.4 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold MoCF_biosynth PF00994.24 gi|307594517|ref|YP_003900834.1| - 5e-20 71.6 0.1 9.1e-20 70.8 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain HEPN PF05168.14 gi|307594518|ref|YP_003900835.1| - 1e-08 35.3 0.1 1.2e-08 35.0 0.1 1.1 1 0 0 1 1 1 1 HEPN domain HEPN_AbiV PF18728.1 gi|307594518|ref|YP_003900835.1| - 0.035 14.3 0.0 0.06 13.5 0.0 1.4 1 0 0 1 1 1 0 AbiV Polbeta PF18765.1 gi|307594519|ref|YP_003900836.1| - 1.7e-05 24.8 0.0 2.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|307594519|ref|YP_003900836.1| - 4.5e-05 23.7 0.0 5.6e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain PaREP1 PF05942.11 gi|307594520|ref|YP_003900837.1| - 3.5e-35 120.4 4.1 6e-35 119.6 4.1 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family FliS PF02561.14 gi|307594520|ref|YP_003900837.1| - 0.008 16.4 0.1 0.02 15.2 0.1 1.6 2 0 0 2 2 2 1 Flagellar protein FliS PIN_5 PF08745.11 gi|307594520|ref|YP_003900837.1| - 0.011 15.1 0.9 0.018 14.5 0.9 1.3 1 0 0 1 1 1 0 PINc domain ribonuclease HEPN PF05168.14 gi|307594520|ref|YP_003900837.1| - 0.022 14.9 4.3 0.045 13.9 2.6 2.5 2 1 0 2 2 2 0 HEPN domain YfdX PF10938.8 gi|307594520|ref|YP_003900837.1| - 0.023 14.6 0.1 0.047 13.6 0.1 1.6 1 1 0 1 1 1 0 YfdX protein NRDD PF13597.6 gi|307594520|ref|YP_003900837.1| - 0.029 13.2 0.0 0.04 12.7 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF1015 PF06245.11 gi|307594520|ref|YP_003900837.1| - 0.064 12.1 0.1 0.086 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) Amidase_2 PF01510.25 gi|307594520|ref|YP_003900837.1| - 0.16 12.5 0.0 0.22 12.0 0.0 1.3 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase AFOR_N PF02730.15 gi|307594521|ref|YP_003900838.1| - 5e-69 232.1 0.3 5.7e-69 232.0 0.3 1.0 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PaREP1 PF05942.11 gi|307594522|ref|YP_003900839.1| - 6.6e-25 87.3 0.1 8e-25 87.0 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family PaREP1 PF05942.11 gi|307594523|ref|YP_003900840.1| - 2.2e-35 121.0 2.7 3.3e-35 120.5 2.7 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|307594523|ref|YP_003900840.1| - 0.00063 19.8 0.5 0.002 18.1 0.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF357) HEPN PF05168.14 gi|307594523|ref|YP_003900840.1| - 0.0014 18.7 1.1 0.0028 17.8 1.1 1.5 1 0 0 1 1 1 1 HEPN domain FliS PF02561.14 gi|307594523|ref|YP_003900840.1| - 0.037 14.3 0.3 0.056 13.7 0.3 1.4 1 0 0 1 1 1 0 Flagellar protein FliS PaREP1 PF05942.11 gi|307594524|ref|YP_003900841.1| - 1.4e-19 70.1 1.3 2e-19 69.6 1.3 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family MR_MLE_C PF13378.6 gi|307594525|ref|YP_003900842.1| - 3.5e-61 206.6 0.1 7.5e-61 205.5 0.0 1.5 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|307594525|ref|YP_003900842.1| - 1.7e-17 63.7 0.2 1.1e-16 61.1 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Enolase_C PF00113.22 gi|307594525|ref|YP_003900842.1| - 0.096 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain Tetradecapep PF08187.11 gi|307594525|ref|YP_003900842.1| - 0.14 12.3 0.3 0.39 10.8 0.3 1.8 1 0 0 1 1 1 0 Myoactive tetradecapeptides family Glu_dehyd_C PF16912.5 gi|307594526|ref|YP_003900843.1| - 4.5e-68 228.9 0.1 5.8e-68 228.5 0.1 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|307594526|ref|YP_003900843.1| - 4e-14 52.4 0.4 9.9e-14 51.1 0.4 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|307594526|ref|YP_003900843.1| - 1.3e-11 44.6 0.1 2.3e-11 43.8 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|307594526|ref|YP_003900843.1| - 6.9e-06 26.2 0.0 1.6e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.21 gi|307594526|ref|YP_003900843.1| - 0.016 15.3 0.1 0.033 14.3 0.0 1.5 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FAD_binding_3 PF01494.19 gi|307594526|ref|YP_003900843.1| - 0.03 13.6 0.2 0.048 12.9 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain POR_N PF01855.19 gi|307594527|ref|YP_003900844.1| - 3.6e-56 190.5 0.0 5.2e-56 190.0 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|307594527|ref|YP_003900844.1| - 1.4e-35 122.9 0.0 3.4e-35 121.7 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|307594527|ref|YP_003900844.1| - 9.7e-11 41.9 0.1 1.8e-09 37.8 0.1 2.9 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|307594527|ref|YP_003900844.1| - 2.5e-05 24.1 0.1 9.7e-05 22.2 0.0 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|307594527|ref|YP_003900844.1| - 8.8e-05 22.2 0.3 0.00021 20.9 0.3 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ADH_zinc_N PF00107.26 gi|307594528|ref|YP_003900845.1| - 4.9e-29 100.9 0.1 7.9e-29 100.3 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|307594528|ref|YP_003900845.1| - 2.7e-23 82.0 0.0 8.3e-23 80.3 0.0 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|307594528|ref|YP_003900845.1| - 8.5e-16 59.2 0.0 1.6e-15 58.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|307594528|ref|YP_003900845.1| - 2.2e-07 30.7 0.0 5.8e-07 29.4 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Glu_dehyd_C PF16912.5 gi|307594528|ref|YP_003900845.1| - 4e-06 26.5 0.2 5.6e-06 26.0 0.2 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus adh_short PF00106.25 gi|307594528|ref|YP_003900845.1| - 0.00011 21.7 0.8 0.00017 21.1 0.6 1.4 1 1 0 1 1 1 1 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|307594528|ref|YP_003900845.1| - 0.00027 20.3 1.2 0.00044 19.6 1.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.6 gi|307594528|ref|YP_003900845.1| - 0.00039 20.4 0.6 0.00071 19.5 0.6 1.4 1 0 0 1 1 1 1 NAD(P)H-binding LDcluster4 PF18306.1 gi|307594528|ref|YP_003900845.1| - 0.00093 18.8 0.4 0.0014 18.2 0.4 1.2 1 0 0 1 1 1 1 SLOG cluster4 family Epimerase PF01370.21 gi|307594528|ref|YP_003900845.1| - 0.0021 17.6 0.1 0.0036 16.8 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ELFV_dehydrog PF00208.21 gi|307594528|ref|YP_003900845.1| - 0.0057 16.4 0.2 0.011 15.5 0.2 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NmrA PF05368.13 gi|307594528|ref|YP_003900845.1| - 0.026 14.1 0.2 0.037 13.6 0.2 1.3 1 0 0 1 1 1 0 NmrA-like family THF_DHG_CYH_C PF02882.19 gi|307594528|ref|YP_003900845.1| - 0.026 13.9 0.6 0.21 10.9 0.5 2.1 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|307594528|ref|YP_003900845.1| - 0.026 13.9 0.1 0.044 13.1 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E1-N PF14463.6 gi|307594528|ref|YP_003900845.1| - 0.047 13.5 1.3 0.064 13.1 0.3 1.7 2 0 0 2 2 2 0 E1 N-terminal domain TrkA_N PF02254.18 gi|307594528|ref|YP_003900845.1| - 0.062 13.6 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain SIS PF01380.22 gi|307594528|ref|YP_003900845.1| - 0.094 12.6 0.1 11 5.8 0.0 2.9 3 0 0 3 3 3 0 SIS domain DapB_N PF01113.20 gi|307594528|ref|YP_003900845.1| - 0.27 11.4 1.3 0.51 10.5 0.6 1.8 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus HK PF02110.15 gi|307594529|ref|YP_003900846.1| - 1.1e-83 280.4 0.5 1.3e-83 280.2 0.5 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|307594529|ref|YP_003900846.1| - 7.3e-07 28.9 0.1 8.8e-07 28.6 0.1 1.0 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|307594529|ref|YP_003900846.1| - 0.00043 19.7 0.1 0.00055 19.4 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|307594529|ref|YP_003900846.1| - 0.0077 15.6 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase TP_methylase PF00590.20 gi|307594529|ref|YP_003900846.1| - 0.019 14.9 0.5 0.052 13.5 0.1 1.8 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases PDDEXK_10 PF07788.11 gi|307594530|ref|YP_003900847.1| - 5.8e-26 90.2 0.8 1.2e-25 89.2 0.8 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|307594530|ref|YP_003900847.1| - 3.8e-25 87.8 18.3 6.6e-23 80.7 14.9 3.5 1 1 1 2 2 2 1 Protein of unknown function (DUF3782) KASH_CCD PF14662.6 gi|307594530|ref|YP_003900847.1| - 7.2e-05 22.7 16.0 0.0048 16.8 14.1 2.1 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 or KASH YabA PF06156.13 gi|307594530|ref|YP_003900847.1| - 0.00019 22.0 11.6 0.25 12.0 7.5 2.8 1 1 1 2 2 2 2 Initiation control protein YabA DUF948 PF06103.11 gi|307594530|ref|YP_003900847.1| - 0.0023 18.2 0.2 0.54 10.6 0.2 3.0 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF948) V_ATPase_I PF01496.19 gi|307594530|ref|YP_003900847.1| - 0.0028 15.7 2.6 0.0035 15.4 2.6 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family SHE3 PF17078.5 gi|307594530|ref|YP_003900847.1| - 0.0036 17.0 5.3 0.0064 16.2 5.3 1.4 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 ERM PF00769.19 gi|307594530|ref|YP_003900847.1| - 0.0047 16.8 15.8 0.0075 16.1 15.8 1.4 1 0 0 1 1 1 1 Ezrin/radixin/moesin family Baculo_PEP_C PF04513.12 gi|307594530|ref|YP_003900847.1| - 0.0064 16.5 1.0 6 6.9 1.1 2.9 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Mod_r PF07200.13 gi|307594530|ref|YP_003900847.1| - 0.0081 16.3 14.8 0.075 13.1 6.3 2.3 1 1 1 2 2 2 2 Modifier of rudimentary (Mod(r)) protein DUF4709 PF15821.5 gi|307594530|ref|YP_003900847.1| - 0.013 15.8 7.9 0.93 9.8 4.4 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4709) NRBF2 PF08961.10 gi|307594530|ref|YP_003900847.1| - 0.014 15.0 1.6 0.014 15.0 1.6 3.1 1 1 2 3 3 3 0 Nuclear receptor-binding factor 2, autophagy regulator BAR_3 PF16746.5 gi|307594530|ref|YP_003900847.1| - 0.021 14.5 3.3 0.031 14.0 3.3 1.2 1 0 0 1 1 1 0 BAR domain of APPL family PTRF_SDPR PF15237.6 gi|307594530|ref|YP_003900847.1| - 0.022 14.4 8.0 0.022 14.4 5.2 2.0 1 1 1 2 2 2 0 PTRF/SDPR family Peptidase_S15 PF02129.18 gi|307594530|ref|YP_003900847.1| - 0.03 13.9 0.8 3.8 7.0 1.0 2.3 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) LPP PF04728.13 gi|307594530|ref|YP_003900847.1| - 0.063 13.7 3.3 5.2 7.5 0.5 3.7 2 1 1 3 3 3 0 Lipoprotein leucine-zipper Exonuc_VII_L PF02601.15 gi|307594530|ref|YP_003900847.1| - 0.082 12.5 7.6 0.12 11.9 7.6 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4618 PF15397.6 gi|307594530|ref|YP_003900847.1| - 0.084 12.3 9.3 0.28 10.6 7.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Leu_zip PF15294.6 gi|307594530|ref|YP_003900847.1| - 0.087 12.3 11.5 0.2 11.2 11.5 1.5 1 1 0 1 1 1 0 Leucine zipper MutS_III PF05192.18 gi|307594530|ref|YP_003900847.1| - 0.12 12.6 4.4 0.73 10.0 5.4 1.7 1 1 1 2 2 2 0 MutS domain III Sec34 PF04136.15 gi|307594530|ref|YP_003900847.1| - 0.12 12.2 4.0 0.67 9.8 0.8 2.8 1 1 2 3 3 3 0 Sec34-like family Snapin_Pallidin PF14712.6 gi|307594530|ref|YP_003900847.1| - 0.13 12.7 9.7 2.3 8.7 0.2 3.1 1 1 1 2 2 2 0 Snapin/Pallidin APG6_N PF17675.1 gi|307594530|ref|YP_003900847.1| - 0.13 12.7 24.7 0.83 10.2 1.9 2.6 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF1664 PF07889.12 gi|307594530|ref|YP_003900847.1| - 0.15 12.1 5.1 1 9.4 1.1 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) HALZ PF02183.18 gi|307594530|ref|YP_003900847.1| - 0.15 12.3 6.1 9.2 6.6 0.0 3.7 2 1 1 3 3 3 0 Homeobox associated leucine zipper SKA2 PF16740.5 gi|307594530|ref|YP_003900847.1| - 0.17 11.7 4.4 1.1 9.1 1.2 2.8 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 2 Spc7 PF08317.11 gi|307594530|ref|YP_003900847.1| - 0.19 10.6 16.2 0.2 10.5 14.2 1.6 1 1 1 2 2 2 0 Spc7 kinetochore protein ADIP PF11559.8 gi|307594530|ref|YP_003900847.1| - 0.23 11.5 14.0 0.21 11.7 9.8 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding HMMR_N PF15905.5 gi|307594530|ref|YP_003900847.1| - 0.34 10.3 12.5 0.46 9.9 12.5 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Nup88 PF10168.9 gi|307594530|ref|YP_003900847.1| - 0.34 8.7 8.1 0.43 8.3 8.1 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF4795 PF16043.5 gi|307594530|ref|YP_003900847.1| - 0.38 10.3 10.5 2.5 7.7 10.6 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) GIT_CC PF16559.5 gi|307594530|ref|YP_003900847.1| - 0.51 10.2 9.0 2.8 7.9 0.5 3.0 1 1 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor FlaC_arch PF05377.11 gi|307594530|ref|YP_003900847.1| - 0.52 10.7 6.3 10 6.6 0.1 3.9 2 1 0 3 3 3 0 Flagella accessory protein C (FlaC) Phage_GPO PF05929.11 gi|307594530|ref|YP_003900847.1| - 0.55 9.8 3.1 1.6 8.3 1.9 1.8 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Radial_spoke_3 PF06098.11 gi|307594530|ref|YP_003900847.1| - 0.56 9.4 19.3 0.11 11.7 12.2 2.2 2 0 0 2 2 2 0 Radial spoke protein 3 DUF2205 PF10224.9 gi|307594530|ref|YP_003900847.1| - 0.59 10.2 8.6 6 6.9 2.0 3.6 2 1 1 3 3 3 0 Short coiled-coil protein Seryl_tRNA_N PF02403.22 gi|307594530|ref|YP_003900847.1| - 0.65 10.3 12.2 0.6 10.4 8.1 2.4 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.6 gi|307594530|ref|YP_003900847.1| - 0.75 9.1 15.5 1.1 8.5 15.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Taxilin PF09728.9 gi|307594530|ref|YP_003900847.1| - 0.77 8.9 17.1 4.7 6.3 17.3 1.8 1 1 1 2 2 2 0 Myosin-like coiled-coil protein Fib_alpha PF08702.10 gi|307594530|ref|YP_003900847.1| - 0.87 9.8 5.6 0.66 10.2 3.0 1.9 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family BRE1 PF08647.11 gi|307594530|ref|YP_003900847.1| - 0.94 9.6 11.8 4.5 7.4 5.4 2.3 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase zf-C4H2 PF10146.9 gi|307594530|ref|YP_003900847.1| - 0.94 9.7 7.8 2.4 8.4 7.8 1.6 1 1 0 1 1 1 0 Zinc finger-containing protein ZapB PF06005.12 gi|307594530|ref|YP_003900847.1| - 1 9.9 29.7 0.64 10.5 9.5 3.4 1 1 2 3 3 2 0 Cell division protein ZapB TMF_DNA_bd PF12329.8 gi|307594530|ref|YP_003900847.1| - 1.1 9.3 14.2 0.62 10.1 7.9 2.6 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding UCR_UQCRX_QCR9 PF05365.12 gi|307594530|ref|YP_003900847.1| - 1.2 9.1 7.5 32 4.5 0.5 3.9 3 0 0 3 3 3 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DUF745 PF05335.13 gi|307594530|ref|YP_003900847.1| - 1.4 8.6 5.8 2.5 7.8 5.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF745) KxDL PF10241.9 gi|307594530|ref|YP_003900847.1| - 1.5 9.2 6.1 0.71 10.2 2.9 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein TMPIT PF07851.13 gi|307594530|ref|YP_003900847.1| - 1.5 8.0 7.8 9.6 5.4 8.5 1.8 1 1 1 2 2 2 0 TMPIT-like protein DUF3450 PF11932.8 gi|307594530|ref|YP_003900847.1| - 1.5 8.0 16.4 0.26 10.6 4.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DivIC PF04977.15 gi|307594530|ref|YP_003900847.1| - 1.6 8.6 16.3 0.99 9.2 0.4 3.1 2 1 1 3 3 3 0 Septum formation initiator Tropomyosin PF00261.20 gi|307594530|ref|YP_003900847.1| - 1.8 7.9 18.6 15 4.9 18.5 2.1 1 1 0 1 1 1 0 Tropomyosin ARGLU PF15346.6 gi|307594530|ref|YP_003900847.1| - 2 8.3 26.3 6.1 6.7 19.8 2.2 1 1 1 2 2 2 0 Arginine and glutamate-rich 1 DUF4446 PF14584.6 gi|307594530|ref|YP_003900847.1| - 3 7.8 5.1 10 6.1 0.8 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Laminin_II PF06009.12 gi|307594530|ref|YP_003900847.1| - 4.2 7.4 6.1 4.6 7.3 4.3 1.8 1 1 1 2 2 2 0 Laminin Domain II FapA PF03961.13 gi|307594530|ref|YP_003900847.1| - 5.6 5.4 7.5 11 4.5 7.4 1.6 1 1 0 1 1 1 0 Flagellar Assembly Protein A DUF16 PF01519.16 gi|307594530|ref|YP_003900847.1| - 5.9 7.4 11.2 19 5.8 0.6 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 TMF_TATA_bd PF12325.8 gi|307594530|ref|YP_003900847.1| - 7 6.9 16.2 5.6 7.2 11.2 2.7 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF1515 PF07439.11 gi|307594530|ref|YP_003900847.1| - 8.5 6.5 6.5 3 7.9 0.6 2.8 2 1 0 3 3 2 0 Protein of unknown function (DUF1515) HIP1_clath_bdg PF16515.5 gi|307594530|ref|YP_003900847.1| - 9.2 6.9 14.2 1.8 9.2 7.6 2.2 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 UPF0449 PF15136.6 gi|307594530|ref|YP_003900847.1| - 9.3 6.8 12.0 4.7 7.7 0.3 3.1 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 Phage_holin_3_6 PF07332.11 gi|307594531|ref|YP_003900848.1| - 0.00052 20.0 1.3 0.00052 20.0 1.3 1.3 1 1 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF3169 PF11368.8 gi|307594531|ref|YP_003900848.1| - 0.0017 17.9 0.2 0.0019 17.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3169) DUF4131 PF13567.6 gi|307594531|ref|YP_003900848.1| - 0.022 14.4 0.0 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2254 PF10011.9 gi|307594531|ref|YP_003900848.1| - 0.039 12.8 1.0 0.064 12.1 1.0 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF4574 PF15141.6 gi|307594531|ref|YP_003900848.1| - 0.041 13.8 0.1 0.073 13.0 0.1 1.4 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 SARAF PF06682.12 gi|307594531|ref|YP_003900848.1| - 0.11 12.2 1.4 0.58 9.8 0.0 2.0 1 1 0 1 1 1 0 SOCE-associated regulatory factor of calcium homoeostasis DUF3784 PF12650.7 gi|307594531|ref|YP_003900848.1| - 0.35 11.1 7.8 0.58 10.4 7.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF2207 PF09972.9 gi|307594531|ref|YP_003900848.1| - 8.2 5.1 7.6 8.7 5.0 7.6 1.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) AAA_18 PF13238.6 gi|307594532|ref|YP_003900849.1| - 0.00034 21.2 0.0 0.0011 19.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|307594532|ref|YP_003900849.1| - 0.00066 19.5 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 gi|307594532|ref|YP_003900849.1| - 0.0011 19.4 0.0 0.0032 17.9 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|307594532|ref|YP_003900849.1| - 0.0014 18.6 0.0 0.0078 16.2 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.6 gi|307594532|ref|YP_003900849.1| - 0.0016 18.7 0.0 0.0071 16.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|307594532|ref|YP_003900849.1| - 0.0035 17.3 0.0 0.0085 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|307594532|ref|YP_003900849.1| - 0.0037 17.4 0.0 0.0076 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|307594532|ref|YP_003900849.1| - 0.0061 17.1 0.0 0.01 16.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|307594532|ref|YP_003900849.1| - 0.0068 16.7 0.0 0.022 15.0 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|307594532|ref|YP_003900849.1| - 0.0079 16.6 0.0 0.015 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.22 gi|307594532|ref|YP_003900849.1| - 0.008 16.5 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 RNA helicase CLP1_P PF16575.5 gi|307594532|ref|YP_003900849.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Cytidylate_kin PF02224.18 gi|307594532|ref|YP_003900849.1| - 0.015 15.1 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase Zeta_toxin PF06414.12 gi|307594532|ref|YP_003900849.1| - 0.021 14.1 0.0 0.034 13.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin Thymidylate_kin PF02223.17 gi|307594532|ref|YP_003900849.1| - 0.037 13.7 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase AAA_24 PF13479.6 gi|307594532|ref|YP_003900849.1| - 0.039 13.7 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|307594532|ref|YP_003900849.1| - 0.056 13.2 0.0 0.18 11.6 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|307594532|ref|YP_003900849.1| - 0.068 12.7 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain SKI PF01202.22 gi|307594532|ref|YP_003900849.1| - 0.11 12.6 0.5 1.5 8.9 0.0 2.3 2 1 1 3 3 3 0 Shikimate kinase RuvB_N PF05496.12 gi|307594532|ref|YP_003900849.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DUF87 PF01935.17 gi|307594532|ref|YP_003900849.1| - 0.12 12.4 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain CbiA PF01656.23 gi|307594532|ref|YP_003900849.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Mg_chelatase PF01078.21 gi|307594532|ref|YP_003900849.1| - 0.15 11.4 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI KASH_CCD PF14662.6 gi|307594533|ref|YP_003900850.1| - 7.8e-08 32.4 19.5 5.9e-06 26.2 14.1 2.3 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 or KASH YabA PF06156.13 gi|307594533|ref|YP_003900850.1| - 8e-07 29.6 17.0 0.023 15.4 2.3 3.9 1 1 4 5 5 5 5 Initiation control protein YabA DUF1664 PF07889.12 gi|307594533|ref|YP_003900850.1| - 4.8e-05 23.4 9.3 0.026 14.6 0.5 3.4 2 1 2 4 4 3 2 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|307594533|ref|YP_003900850.1| - 6.7e-05 23.4 28.0 0.03 14.8 6.1 3.2 1 1 2 3 3 3 3 Apg6 coiled-coil region Sec34 PF04136.15 gi|307594533|ref|YP_003900850.1| - 7e-05 22.8 4.8 0.038 13.9 0.1 3.1 1 1 2 3 3 3 2 Sec34-like family SHE3 PF17078.5 gi|307594533|ref|YP_003900850.1| - 0.00033 20.5 10.3 0.00061 19.6 10.3 1.4 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 Mod_r PF07200.13 gi|307594533|ref|YP_003900850.1| - 0.00033 20.8 16.1 0.11 12.6 8.8 2.5 1 1 1 2 2 2 2 Modifier of rudimentary (Mod(r)) protein Dor1 PF04124.12 gi|307594533|ref|YP_003900850.1| - 0.00035 19.4 8.6 0.0023 16.7 1.6 3.4 2 1 2 4 4 4 1 Dor1-like family DUF948 PF06103.11 gi|307594533|ref|YP_003900850.1| - 0.00037 20.7 0.8 0.6 10.4 0.1 3.5 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) bZIP_1 PF00170.21 gi|307594533|ref|YP_003900850.1| - 0.00038 20.5 13.8 0.33 11.1 1.4 4.3 1 1 3 4 4 4 2 bZIP transcription factor Syntaxin PF00804.25 gi|307594533|ref|YP_003900850.1| - 0.0004 20.1 8.1 0.0099 15.6 1.7 2.7 1 1 1 2 2 2 1 Syntaxin DUF2408 PF10303.9 gi|307594533|ref|YP_003900850.1| - 0.0004 21.0 6.6 0.084 13.4 0.1 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF2408) GIT_CC PF16559.5 gi|307594533|ref|YP_003900850.1| - 0.00055 19.8 15.3 0.074 12.9 0.5 4.1 3 1 1 4 4 4 1 GIT coiled-coil Rho guanine nucleotide exchange factor HALZ PF02183.18 gi|307594533|ref|YP_003900850.1| - 0.00099 19.3 9.2 0.57 10.4 0.0 4.3 4 1 1 5 5 3 1 Homeobox associated leucine zipper zf-C4H2 PF10146.9 gi|307594533|ref|YP_003900850.1| - 0.0012 19.2 11.9 0.012 16.0 7.9 2.2 1 1 0 2 2 2 1 Zinc finger-containing protein ZapB PF06005.12 gi|307594533|ref|YP_003900850.1| - 0.0015 18.9 33.1 10 6.6 14.1 4.2 1 1 2 3 3 3 0 Cell division protein ZapB FlaC_arch PF05377.11 gi|307594533|ref|YP_003900850.1| - 0.0019 18.5 15.6 3 8.3 0.5 6.1 2 1 2 6 6 6 0 Flagella accessory protein C (FlaC) COG6 PF06419.11 gi|307594533|ref|YP_003900850.1| - 0.0021 16.4 5.1 0.13 10.4 0.3 2.1 1 1 1 2 2 2 2 Conserved oligomeric complex COG6 TMF_DNA_bd PF12329.8 gi|307594533|ref|YP_003900850.1| - 0.0021 18.0 2.5 0.0021 18.0 2.5 3.4 2 1 1 3 3 3 1 TATA element modulatory factor 1 DNA binding Snapin_Pallidin PF14712.6 gi|307594533|ref|YP_003900850.1| - 0.0024 18.3 8.6 2.6 8.5 0.2 3.7 2 1 2 4 4 3 0 Snapin/Pallidin DUF4709 PF15821.5 gi|307594533|ref|YP_003900850.1| - 0.0025 18.1 7.3 0.13 12.5 0.9 2.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4709) Hemerythrin PF01814.23 gi|307594533|ref|YP_003900850.1| - 0.0033 18.1 4.8 0.087 13.4 1.0 2.9 1 1 2 3 3 3 1 Hemerythrin HHE cation binding domain ERM PF00769.19 gi|307594533|ref|YP_003900850.1| - 0.0034 17.2 19.2 0.14 12.0 4.0 2.2 1 1 1 2 2 2 2 Ezrin/radixin/moesin family TMPIT PF07851.13 gi|307594533|ref|YP_003900850.1| - 0.0056 16.0 9.9 0.042 13.1 0.6 2.1 1 1 1 2 2 2 1 TMPIT-like protein PTRF_SDPR PF15237.6 gi|307594533|ref|YP_003900850.1| - 0.0064 16.2 11.3 0.012 15.2 3.7 2.8 1 1 2 3 3 3 1 PTRF/SDPR family PI3K_P85_iSH2 PF16454.5 gi|307594533|ref|YP_003900850.1| - 0.0064 16.1 7.3 0.0064 16.1 7.3 1.8 1 1 1 2 2 2 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain MutS_III PF05192.18 gi|307594533|ref|YP_003900850.1| - 0.0068 16.6 2.2 0.011 16.0 1.7 1.5 1 1 0 1 1 1 1 MutS domain III TACC_C PF05010.14 gi|307594533|ref|YP_003900850.1| - 0.0069 16.2 6.8 0.0069 16.2 6.8 2.1 1 1 1 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal HMMR_C PF15908.5 gi|307594533|ref|YP_003900850.1| - 0.0069 16.7 7.3 0.29 11.4 3.2 3.0 1 1 1 2 2 2 1 Hyaluronan mediated motility receptor C-terminal BRE1 PF08647.11 gi|307594533|ref|YP_003900850.1| - 0.0069 16.4 9.6 0.22 11.6 1.1 2.4 1 1 1 2 2 2 1 BRE1 E3 ubiquitin ligase BLOC1_2 PF10046.9 gi|307594533|ref|YP_003900850.1| - 0.0086 16.3 9.0 0.16 12.3 0.4 3.6 1 1 2 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|307594533|ref|YP_003900850.1| - 0.0087 16.1 3.1 0.55 10.3 2.0 2.9 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus LPP PF04728.13 gi|307594533|ref|YP_003900850.1| - 0.0089 16.4 3.2 6.2 7.3 0.2 4.4 1 1 3 4 4 4 0 Lipoprotein leucine-zipper Nmad5 PF18757.1 gi|307594533|ref|YP_003900850.1| - 0.0092 16.2 8.3 1 9.5 0.8 3.1 1 1 2 3 3 3 1 Nucleotide modification associated domain 5 Cas_DxTHG PF09455.10 gi|307594533|ref|YP_003900850.1| - 0.01 15.5 7.1 0.012 15.3 7.1 1.2 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family DUF16 PF01519.16 gi|307594533|ref|YP_003900850.1| - 0.011 16.3 10.5 0.93 10.0 1.9 3.5 2 1 2 4 4 3 0 Protein of unknown function DUF16 ADIP PF11559.8 gi|307594533|ref|YP_003900850.1| - 0.011 15.9 16.0 0.033 14.3 5.0 2.4 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF4795 PF16043.5 gi|307594533|ref|YP_003900850.1| - 0.012 15.3 6.4 0.52 9.9 6.4 3.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) SKA2 PF16740.5 gi|307594533|ref|YP_003900850.1| - 0.012 15.4 6.2 0.52 10.1 0.5 3.4 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 2 4HB_MCP_1 PF12729.7 gi|307594533|ref|YP_003900850.1| - 0.013 15.1 1.2 0.013 15.1 1.2 2.3 1 1 0 2 2 2 0 Four helix bundle sensory module for signal transduction CENP-F_leu_zip PF10473.9 gi|307594533|ref|YP_003900850.1| - 0.015 15.3 18.5 0.15 12.1 3.7 2.8 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NRBF2 PF08961.10 gi|307594533|ref|YP_003900850.1| - 0.016 14.8 1.7 0.016 14.8 1.7 4.0 1 1 4 5 5 5 0 Nuclear receptor-binding factor 2, autophagy regulator Taxilin PF09728.9 gi|307594533|ref|YP_003900850.1| - 0.018 14.2 14.1 0.1 11.8 13.6 1.9 1 1 1 2 2 2 0 Myosin-like coiled-coil protein RNase_E_G PF10150.9 gi|307594533|ref|YP_003900850.1| - 0.018 14.5 10.7 0.2 11.1 2.0 2.2 1 1 1 2 2 2 0 Ribonuclease E/G family UPF0242 PF06785.11 gi|307594533|ref|YP_003900850.1| - 0.02 15.0 17.9 0.31 11.1 4.8 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus UPF0449 PF15136.6 gi|307594533|ref|YP_003900850.1| - 0.021 15.3 11.7 3.1 8.3 0.4 3.5 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 Leu_zip PF15294.6 gi|307594533|ref|YP_003900850.1| - 0.024 14.2 14.5 0.4 10.2 7.1 2.6 1 1 1 2 2 2 0 Leucine zipper CENP-H PF05837.12 gi|307594533|ref|YP_003900850.1| - 0.026 15.0 16.8 0.67 10.4 5.9 2.8 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Seryl_tRNA_N PF02403.22 gi|307594533|ref|YP_003900850.1| - 0.026 14.7 15.7 0.028 14.7 6.3 2.7 2 1 1 3 3 2 0 Seryl-tRNA synthetase N-terminal domain Fungal_TACC PF12709.7 gi|307594533|ref|YP_003900850.1| - 0.027 14.9 14.1 0.71 10.4 0.7 4.2 1 1 4 5 5 5 0 Fungal Transforming acidic coiled-coil (TACC) proteins DivIC PF04977.15 gi|307594533|ref|YP_003900850.1| - 0.038 13.7 23.3 0.59 9.9 3.1 4.3 2 1 2 4 4 4 0 Septum formation initiator RmuC PF02646.16 gi|307594533|ref|YP_003900850.1| - 0.055 12.6 12.2 0.029 13.5 1.5 3.1 1 1 2 3 3 3 0 RmuC family Laminin_I PF06008.14 gi|307594533|ref|YP_003900850.1| - 0.061 13.0 14.5 0.11 12.2 13.4 1.8 1 1 0 1 1 1 0 Laminin Domain I DUF724 PF05266.14 gi|307594533|ref|YP_003900850.1| - 0.063 13.1 8.5 1.1 9.1 0.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF724) DUF3708 PF12501.8 gi|307594533|ref|YP_003900850.1| - 0.066 13.0 1.0 17 5.2 0.1 3.4 1 1 3 4 4 4 0 Phosphate ATP-binding cassette transporter COG5 PF10392.9 gi|307594533|ref|YP_003900850.1| - 0.066 13.4 4.9 1.7 8.8 1.1 3.3 1 1 2 3 3 3 0 Golgi transport complex subunit 5 JAKMIP_CC3 PF16034.5 gi|307594533|ref|YP_003900850.1| - 0.067 13.1 26.2 1.4 8.8 9.7 2.4 1 1 1 2 2 2 0 JAKMIP CC3 domain Occludin_ELL PF07303.13 gi|307594533|ref|YP_003900850.1| - 0.074 13.8 6.2 3.4 8.4 0.2 3.3 1 1 2 3 3 3 0 Occludin homology domain Prominin PF05478.11 gi|307594533|ref|YP_003900850.1| - 0.088 10.8 7.0 1.6 6.6 0.5 2.2 1 1 1 2 2 2 0 Prominin EzrA PF06160.12 gi|307594533|ref|YP_003900850.1| - 0.13 10.4 11.1 0.31 9.2 10.7 1.7 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA DUF4618 PF15397.6 gi|307594533|ref|YP_003900850.1| - 0.17 11.3 15.2 0.038 13.4 6.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Cytochrom_C_2 PF01322.20 gi|307594533|ref|YP_003900850.1| - 0.18 12.7 5.3 1.9 9.4 2.3 3.2 2 1 1 3 3 2 0 Cytochrome C' Laminin_II PF06009.12 gi|307594533|ref|YP_003900850.1| - 0.18 11.8 10.0 2.9 7.9 3.9 2.5 1 1 1 2 2 2 0 Laminin Domain II Fib_alpha PF08702.10 gi|307594533|ref|YP_003900850.1| - 0.2 11.9 8.8 0.69 10.1 2.3 2.8 2 1 1 3 3 2 0 Fibrinogen alpha/beta chain family TMF_TATA_bd PF12325.8 gi|307594533|ref|YP_003900850.1| - 0.2 11.9 17.9 1.2 9.3 8.0 3.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF3450 PF11932.8 gi|307594533|ref|YP_003900850.1| - 0.25 10.6 17.4 0.68 9.2 5.9 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) GAS PF13851.6 gi|307594533|ref|YP_003900850.1| - 0.29 10.5 18.6 0.66 9.3 12.4 2.7 2 1 1 3 3 2 0 Growth-arrest specific micro-tubule binding CLZ PF16526.5 gi|307594533|ref|YP_003900850.1| - 0.35 11.3 9.0 7.6 7.0 0.5 4.4 2 1 4 6 6 6 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FapA PF03961.13 gi|307594533|ref|YP_003900850.1| - 0.36 9.4 11.3 0.25 9.9 4.5 2.2 1 1 1 2 2 2 0 Flagellar Assembly Protein A TPR_MLP1_2 PF07926.12 gi|307594533|ref|YP_003900850.1| - 0.37 10.8 17.4 0.27 11.3 6.9 2.6 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein OmpH PF03938.14 gi|307594533|ref|YP_003900850.1| - 0.39 11.1 8.6 0.16 12.3 5.2 2.1 1 1 1 2 2 1 0 Outer membrane protein (OmpH-like) DUF1640 PF07798.11 gi|307594533|ref|YP_003900850.1| - 0.4 10.7 15.3 0.53 10.3 3.8 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) DUF2353 PF09789.9 gi|307594533|ref|YP_003900850.1| - 0.43 9.9 12.8 0.78 9.0 12.7 1.4 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) DegS PF05384.11 gi|307594533|ref|YP_003900850.1| - 0.47 9.9 13.9 0.81 9.2 2.9 2.9 1 1 2 3 3 3 0 Sensor protein DegS Nup88 PF10168.9 gi|307594533|ref|YP_003900850.1| - 0.51 8.1 14.5 1.5 6.6 10.4 2.0 1 1 0 1 1 1 0 Nuclear pore component DUF2205 PF10224.9 gi|307594533|ref|YP_003900850.1| - 0.52 10.3 15.4 5 7.2 1.8 4.2 1 1 3 4 4 4 0 Short coiled-coil protein bZIP_Maf PF03131.17 gi|307594533|ref|YP_003900850.1| - 0.61 10.6 14.0 3.6 8.2 0.5 4.0 1 1 4 5 5 5 0 bZIP Maf transcription factor SIKE PF05769.11 gi|307594533|ref|YP_003900850.1| - 0.62 10.0 12.7 0.079 12.9 4.0 2.4 1 1 1 2 2 2 0 SIKE family TLE_N PF03920.15 gi|307594533|ref|YP_003900850.1| - 0.66 10.1 3.3 6.9 6.8 0.1 3.1 1 1 3 4 4 4 0 Groucho/TLE N-terminal Q-rich domain GIT1_C PF12205.8 gi|307594533|ref|YP_003900850.1| - 0.73 10.0 3.4 1.2e+02 2.8 0.1 3.8 2 1 2 4 4 4 0 G protein-coupled receptor kinase-interacting protein 1 C term AAA_13 PF13166.6 gi|307594533|ref|YP_003900850.1| - 0.74 8.4 12.9 0.32 9.6 3.8 2.1 1 1 1 2 2 2 0 AAA domain DUF4201 PF13870.6 gi|307594533|ref|YP_003900850.1| - 0.82 9.4 12.4 4.8 6.9 5.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) AAA_27 PF13514.6 gi|307594533|ref|YP_003900850.1| - 0.83 9.2 7.2 2.5 7.6 0.8 3.1 1 1 2 3 3 3 0 AAA domain HAP1_N PF04849.13 gi|307594533|ref|YP_003900850.1| - 1.2 8.3 17.4 3.7 6.6 17.4 1.7 1 1 0 1 1 1 0 HAP1 N-terminal conserved region JIP_LZII PF16471.5 gi|307594533|ref|YP_003900850.1| - 1.3 9.2 17.4 4 7.7 4.4 3.9 1 1 3 4 4 4 0 JNK-interacting protein leucine zipper II V_ATPase_I PF01496.19 gi|307594533|ref|YP_003900850.1| - 1.6 6.5 9.8 4 5.2 9.9 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family RasGAP_C PF03836.15 gi|307594533|ref|YP_003900850.1| - 2.2 8.4 8.2 14 5.8 1.2 2.8 1 1 1 2 2 2 0 RasGAP C-terminus DUF4446 PF14584.6 gi|307594533|ref|YP_003900850.1| - 2.3 8.2 7.3 6.9 6.6 0.7 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Tho2 PF11262.8 gi|307594533|ref|YP_003900850.1| - 3.1 6.9 13.1 1.6 7.8 2.7 2.3 1 1 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Cep57_CLD_2 PF14197.6 gi|307594533|ref|YP_003900850.1| - 3.6 7.7 14.2 1.2 9.2 1.1 3.8 1 1 1 2 2 1 0 Centrosome localisation domain of PPC89 CtIP_N PF10482.9 gi|307594533|ref|YP_003900850.1| - 3.8 7.6 15.2 10 6.2 10.0 3.0 1 1 2 3 3 3 0 Tumour-suppressor protein CtIP N-terminal domain HMMR_N PF15905.5 gi|307594533|ref|YP_003900850.1| - 4.4 6.7 16.1 0.94 8.9 11.1 1.7 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal FUSC PF04632.12 gi|307594533|ref|YP_003900850.1| - 4.6 5.6 9.4 18 3.7 7.4 2.1 2 1 1 3 3 2 0 Fusaric acid resistance protein family Uso1_p115_C PF04871.13 gi|307594533|ref|YP_003900850.1| - 5.4 7.4 10.4 70 3.8 7.4 3.0 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region PRKG1_interact PF15898.5 gi|307594533|ref|YP_003900850.1| - 6.1 7.8 18.8 3.3 8.6 8.7 3.3 1 1 3 4 4 4 0 cGMP-dependent protein kinase interacting domain Exonuc_VII_L PF02601.15 gi|307594533|ref|YP_003900850.1| - 6.1 6.3 12.1 58 3.1 12.1 2.0 1 1 0 1 1 1 0 Exonuclease VII, large subunit XRCC4 PF06632.12 gi|307594533|ref|YP_003900850.1| - 6.5 5.5 19.3 3.3 6.5 5.9 3.0 1 1 2 3 3 3 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 DivIVA PF05103.13 gi|307594533|ref|YP_003900850.1| - 8.4 6.5 13.4 8.5 6.5 0.5 4.1 1 1 2 3 3 3 0 DivIVA protein MORN_2 PF07661.13 gi|307594533|ref|YP_003900850.1| - 9 6.9 10.2 20 5.8 0.1 4.5 4 1 1 5 5 4 0 MORN repeat variant Yip1 PF04893.17 gi|307594534|ref|YP_003900851.1| - 0.0024 17.6 26.1 0.0036 17.1 26.1 1.2 1 0 0 1 1 1 1 Yip1 domain ApoO PF09769.9 gi|307594534|ref|YP_003900851.1| - 0.0043 17.0 1.3 0.01 15.8 1.3 1.6 1 0 0 1 1 1 1 Apolipoprotein O Gag_p10 PF02337.17 gi|307594534|ref|YP_003900851.1| - 0.084 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Retroviral GAG p10 protein ABC_tran PF00005.27 gi|307594535|ref|YP_003900852.1| - 3.9e-29 101.9 0.0 5.2e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307594535|ref|YP_003900852.1| - 6.1e-11 42.7 1.0 1.5e-05 25.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307594535|ref|YP_003900852.1| - 2.3e-05 23.9 0.1 0.11 11.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|307594535|ref|YP_003900852.1| - 0.002 17.9 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|307594535|ref|YP_003900852.1| - 0.0042 17.3 0.1 0.13 12.6 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|307594535|ref|YP_003900852.1| - 0.0057 17.2 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|307594535|ref|YP_003900852.1| - 0.007 16.0 0.0 0.52 9.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|307594535|ref|YP_003900852.1| - 0.0075 16.5 0.8 0.12 12.7 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|307594535|ref|YP_003900852.1| - 0.029 14.1 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|307594535|ref|YP_003900852.1| - 0.043 14.0 0.2 0.12 12.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain Planc_extracel PF07595.12 gi|307594535|ref|YP_003900852.1| - 0.058 13.2 0.2 0.058 13.2 0.2 2.1 2 0 0 2 2 1 0 Planctomycete extracellular AAA_15 PF13175.6 gi|307594535|ref|YP_003900852.1| - 0.079 12.7 0.0 0.16 11.6 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 gi|307594535|ref|YP_003900852.1| - 0.081 13.3 0.9 0.16 12.4 0.9 1.8 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|307594535|ref|YP_003900852.1| - 0.083 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|307594535|ref|YP_003900852.1| - 0.14 12.1 0.4 0.35 10.8 0.1 1.8 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.17 gi|307594535|ref|YP_003900852.1| - 0.17 11.6 0.0 2.1 8.0 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein cobW PF02492.19 gi|307594535|ref|YP_003900852.1| - 0.17 11.4 0.2 0.43 10.2 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|307594535|ref|YP_003900852.1| - 0.18 11.5 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF11 PF01345.18 gi|307594536|ref|YP_003900853.1| - 0.00021 21.5 0.9 0.00021 21.5 0.9 4.0 4 1 0 4 4 4 1 Domain of unknown function DUF11 CARDB PF07705.11 gi|307594536|ref|YP_003900853.1| - 0.0036 17.5 0.9 0.0036 17.5 0.9 4.1 4 2 0 4 4 4 1 CARDB TRAP_beta PF05753.14 gi|307594536|ref|YP_003900853.1| - 0.014 14.8 9.0 0.065 12.6 0.1 4.1 4 1 0 4 4 4 0 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.9 gi|307594536|ref|YP_003900853.1| - 0.17 12.1 1.7 10 6.4 0.0 4.0 4 1 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Sec23_BS PF08033.12 gi|307594536|ref|YP_003900853.1| - 0.49 11.2 5.5 0.25 12.1 0.9 3.0 3 1 1 4 4 4 0 Sec23/Sec24 beta-sandwich domain CcmD PF04995.14 gi|307594536|ref|YP_003900853.1| - 0.82 9.8 7.2 4.9 7.3 2.8 2.4 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Stevor PF17410.2 gi|307594536|ref|YP_003900853.1| - 2.8 7.4 4.4 5.3 6.5 4.4 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame FtsX PF02687.21 gi|307594537|ref|YP_003900854.1| - 1.4e-12 47.9 7.1 1.4e-12 47.9 7.1 4.0 3 1 0 3 3 3 2 FtsX-like permease family MacB_PCD PF12704.7 gi|307594537|ref|YP_003900854.1| - 3.1e-10 40.7 9.8 3.1e-10 40.7 9.8 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain ATPase_2 PF01637.18 gi|307594538|ref|YP_003900855.1| - 3.9e-10 40.0 0.0 7.3e-10 39.2 0.0 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|307594538|ref|YP_003900855.1| - 2.1e-08 34.3 0.0 0.0025 17.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|307594538|ref|YP_003900855.1| - 5.5e-08 33.4 0.1 2.3e-07 31.4 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|307594538|ref|YP_003900855.1| - 4e-06 27.1 0.0 2.3e-05 24.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|307594538|ref|YP_003900855.1| - 0.018 15.5 0.0 0.28 11.6 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Tetraspanin PF00335.20 gi|307594539|ref|YP_003900856.1| - 1.9 8.1 5.3 1.1 8.9 0.4 2.1 2 0 0 2 2 2 0 Tetraspanin family Saf_2TM PF18303.1 gi|307594539|ref|YP_003900856.1| - 8 6.0 6.5 9.2 5.8 0.2 2.3 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain MazE_antitoxin PF04014.18 gi|307594540|ref|YP_003900857.1| - 5.2e-05 23.1 0.0 0.002 18.0 0.0 2.5 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin DFP PF04127.15 gi|307594541|ref|YP_003900858.1| - 8.1e-42 143.2 0.0 3.9e-41 140.9 0.0 1.9 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|307594541|ref|YP_003900858.1| - 1.5e-35 122.3 0.2 2.3e-35 121.7 0.2 1.3 1 0 0 1 1 1 1 Flavoprotein Sugar_tr PF00083.24 gi|307594542|ref|YP_003900859.1| - 3.2e-28 98.8 32.2 1.6e-21 76.7 10.1 3.1 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_1 PF07690.16 gi|307594542|ref|YP_003900859.1| - 6.9e-23 81.1 83.5 1.5e-20 73.5 52.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily ETF PF01012.21 gi|307594543|ref|YP_003900860.1| - 4.4e-45 153.8 0.0 7.1e-45 153.1 0.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|307594543|ref|YP_003900860.1| - 6.9e-32 109.3 1.6 1.2e-31 108.5 1.6 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.22 gi|307594543|ref|YP_003900860.1| - 0.012 15.4 0.6 7.4 6.3 0.1 2.9 2 1 1 3 3 3 0 Thiamine pyrophosphate enzyme, central domain ETF PF01012.21 gi|307594544|ref|YP_003900861.1| - 4.3e-39 134.3 0.0 6e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Fer4_11 PF13247.6 gi|307594545|ref|YP_003900862.1| - 3.5e-07 30.3 4.3 4.4e-07 30.0 4.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307594545|ref|YP_003900862.1| - 7.5e-07 29.6 8.2 0.0011 19.4 0.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|307594545|ref|YP_003900862.1| - 1.7e-06 28.1 3.7 2.4e-06 27.6 3.7 1.3 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_2 PF12797.7 gi|307594545|ref|YP_003900862.1| - 1.9e-06 27.6 11.5 0.0012 18.8 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307594545|ref|YP_003900862.1| - 0.00011 22.3 12.2 0.00017 21.7 12.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307594545|ref|YP_003900862.1| - 0.00069 19.3 1.7 0.00069 19.3 1.7 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307594545|ref|YP_003900862.1| - 0.00071 19.6 15.0 0.0033 17.5 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307594545|ref|YP_003900862.1| - 0.0036 17.4 10.9 0.01 16.0 11.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307594545|ref|YP_003900862.1| - 0.006 17.0 1.1 0.006 17.0 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|307594545|ref|YP_003900862.1| - 0.0064 17.0 7.0 0.011 16.2 0.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307594545|ref|YP_003900862.1| - 0.0075 17.2 0.7 0.0075 17.2 0.7 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|307594545|ref|YP_003900862.1| - 0.015 15.8 1.8 0.015 15.8 1.8 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307594545|ref|YP_003900862.1| - 0.026 14.6 14.8 0.054 13.6 1.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307594545|ref|YP_003900862.1| - 0.14 13.1 5.2 0.14 13.1 5.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|307594545|ref|YP_003900862.1| - 1 9.9 10.6 0.37 11.4 1.8 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|307594545|ref|YP_003900862.1| - 2 8.2 8.6 0.91 9.3 1.9 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DAO PF01266.24 gi|307594546|ref|YP_003900863.1| - 2.9e-13 50.1 0.5 1.7e-07 31.2 0.1 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|307594546|ref|YP_003900863.1| - 4.9e-12 45.6 0.8 2.9e-08 33.2 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|307594546|ref|YP_003900863.1| - 2.3e-11 43.1 0.7 9e-11 41.1 0.7 1.8 1 1 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|307594546|ref|YP_003900863.1| - 1.4e-10 40.8 1.5 9.7e-10 38.1 1.5 2.0 1 1 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|307594546|ref|YP_003900863.1| - 7.9e-09 35.2 0.1 2.7e-08 33.4 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|307594546|ref|YP_003900863.1| - 2.7e-08 33.9 0.1 6.6e-08 32.7 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|307594546|ref|YP_003900863.1| - 7.9e-08 31.9 0.0 9.7e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|307594546|ref|YP_003900863.1| - 2.7e-07 30.3 0.2 4.4e-07 29.6 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|307594546|ref|YP_003900863.1| - 2e-06 27.1 0.1 2.7e-06 26.7 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.22 gi|307594546|ref|YP_003900863.1| - 2.7e-06 26.7 0.9 6.1e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|307594546|ref|YP_003900863.1| - 1e-05 25.0 0.3 1.9e-05 24.0 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|307594546|ref|YP_003900863.1| - 5.9e-05 22.5 0.1 0.00014 21.3 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|307594546|ref|YP_003900863.1| - 0.00018 22.0 0.1 0.00085 19.8 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|307594546|ref|YP_003900863.1| - 0.0002 20.4 0.1 0.16 10.8 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|307594546|ref|YP_003900863.1| - 0.00029 20.9 0.3 0.0009 19.3 0.3 1.8 1 1 0 1 1 1 1 FAD-NAD(P)-binding GMC_oxred_N PF00732.19 gi|307594546|ref|YP_003900863.1| - 0.0012 18.3 0.0 0.16 11.3 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase 3HCDH_N PF02737.18 gi|307594546|ref|YP_003900863.1| - 0.031 14.2 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|307594546|ref|YP_003900863.1| - 0.04 14.2 0.0 0.1 12.9 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|307594546|ref|YP_003900863.1| - 0.053 14.0 0.1 0.16 12.4 0.0 1.8 2 0 0 2 2 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|307594546|ref|YP_003900863.1| - 0.068 13.2 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|307594546|ref|YP_003900863.1| - 0.076 12.3 0.3 0.27 10.5 0.2 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GDI PF00996.18 gi|307594546|ref|YP_003900863.1| - 0.082 11.4 0.1 1 7.8 0.0 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor Radical_SAM PF04055.21 gi|307594547|ref|YP_003900864.1| - 4.1e-24 85.8 0.0 5.2e-23 82.2 0.0 2.3 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|307594547|ref|YP_003900864.1| - 2.6e-11 43.9 0.1 6.5e-11 42.6 0.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|307594547|ref|YP_003900864.1| - 3e-09 37.3 0.0 9.1e-09 35.7 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|307594547|ref|YP_003900864.1| - 6e-06 26.4 0.0 1.3e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|307594547|ref|YP_003900864.1| - 0.0053 16.2 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.19 gi|307594547|ref|YP_003900864.1| - 0.016 14.8 0.0 0.041 13.4 0.0 1.6 1 1 0 1 1 1 0 HMGL-like HTH_22 PF13309.6 gi|307594547|ref|YP_003900864.1| - 0.041 14.0 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 HTH domain NAD_binding_10 PF13460.6 gi|307594547|ref|YP_003900864.1| - 0.14 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding B12-binding PF02310.19 gi|307594548|ref|YP_003900865.1| - 3e-28 98.3 0.0 5.1e-27 94.3 0.0 2.2 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.21 gi|307594548|ref|YP_003900865.1| - 2.2e-24 86.7 0.3 3.6e-23 82.8 0.1 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|307594548|ref|YP_003900865.1| - 0.0013 19.0 0.0 0.004 17.4 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM_N PF08497.10 gi|307594548|ref|YP_003900865.1| - 0.026 13.8 0.0 12 5.1 0.0 3.0 4 0 0 4 4 4 0 Radical SAM N-terminal Peripla_BP_6 PF13458.6 gi|307594548|ref|YP_003900865.1| - 0.068 12.8 0.0 0.36 10.4 0.0 1.9 1 1 1 2 2 2 0 Periplasmic binding protein Fer4_14 PF13394.6 gi|307594548|ref|YP_003900865.1| - 0.077 13.1 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF4974 PF16344.5 gi|307594549|ref|YP_003900866.1| - 0.0049 16.8 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4974) ArgoMid PF16487.5 gi|307594549|ref|YP_003900866.1| - 0.16 12.2 0.0 17 5.8 0.0 2.4 2 0 0 2 2 2 0 Mid domain of argonaute Ribosomal_S24e PF01282.19 gi|307594550|ref|YP_003900867.1| - 1.1e-18 67.0 0.0 2.1e-18 66.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S24e GYD PF08734.11 gi|307594550|ref|YP_003900867.1| - 0.21 11.6 1.1 1.4 8.9 0.0 2.1 2 0 0 2 2 2 0 GYD domain Spt4 PF06093.13 gi|307594551|ref|YP_003900868.1| - 3.7e-16 59.0 0.4 4.6e-16 58.7 0.4 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger UPF0547 PF10571.9 gi|307594551|ref|YP_003900868.1| - 0.0012 18.9 3.6 0.0017 18.4 3.6 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|307594551|ref|YP_003900868.1| - 0.0014 19.3 0.4 0.0019 18.9 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|307594551|ref|YP_003900868.1| - 0.0017 17.7 3.6 0.0025 17.1 3.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|307594551|ref|YP_003900868.1| - 0.0029 17.6 0.8 0.0042 17.1 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RRN7 PF11781.8 gi|307594551|ref|YP_003900868.1| - 0.0065 16.1 0.2 0.0065 16.1 0.2 2.0 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|307594551|ref|YP_003900868.1| - 0.0084 15.6 1.5 0.038 13.5 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding DUF35_N PF12172.8 gi|307594551|ref|YP_003900868.1| - 0.011 15.6 1.5 0.017 15.0 1.5 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|307594551|ref|YP_003900868.1| - 0.028 14.2 2.7 0.038 13.7 2.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|307594551|ref|YP_003900868.1| - 0.029 14.4 0.4 0.038 14.0 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-FPG_IleRS PF06827.14 gi|307594551|ref|YP_003900868.1| - 0.035 14.0 1.7 0.39 10.6 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS OrfB_Zn_ribbon PF07282.11 gi|307594551|ref|YP_003900868.1| - 0.037 14.0 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF1451 PF07295.11 gi|307594551|ref|YP_003900868.1| - 0.053 13.6 0.5 0.072 13.1 0.5 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|307594551|ref|YP_003900868.1| - 0.32 11.2 3.3 1.4 9.1 3.3 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|307594551|ref|YP_003900868.1| - 1.4 9.3 6.5 0.77 10.1 1.9 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase HhH-GPD PF00730.25 gi|307594552|ref|YP_003900869.1| - 2.3e-11 44.1 0.0 4e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|307594552|ref|YP_003900869.1| - 0.00065 20.3 0.0 0.28 11.8 0.0 2.7 1 1 1 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.23 gi|307594552|ref|YP_003900869.1| - 0.0027 17.5 0.0 0.012 15.5 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif Reoviridae_Vp9 PF08978.10 gi|307594552|ref|YP_003900869.1| - 0.016 14.4 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 Reoviridae VP9 EndIII_4Fe-2S PF10576.9 gi|307594552|ref|YP_003900869.1| - 0.016 15.5 8.2 0.026 14.9 8.2 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Ribo_biogen_C PF04034.13 gi|307594553|ref|YP_003900870.1| - 6e-39 132.7 0.0 7.7e-39 132.3 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|307594553|ref|YP_003900870.1| - 0.0053 16.5 0.0 0.0087 15.9 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DTW PF03942.15 gi|307594553|ref|YP_003900870.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.4 1 1 0 1 1 1 0 DTW domain Ald_Xan_dh_C2 PF02738.18 gi|307594554|ref|YP_003900871.1| - 1.2e-131 439.9 0.0 1.4e-131 439.7 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|307594554|ref|YP_003900871.1| - 2.3e-17 63.3 0.0 4.5e-17 62.4 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FAD_binding_5 PF00941.21 gi|307594555|ref|YP_003900872.1| - 9.1e-51 172.0 0.0 1.5e-50 171.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase Fer2_2 PF01799.20 gi|307594555|ref|YP_003900872.1| - 1.4e-21 76.2 0.1 3e-21 75.2 0.1 1.5 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|307594555|ref|YP_003900872.1| - 5.7e-06 26.2 0.2 1.5e-05 24.9 0.2 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain CO_deh_flav_C PF03450.17 gi|307594555|ref|YP_003900872.1| - 9.2e-06 25.8 0.0 2.9e-05 24.2 0.0 1.9 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_3 PF13085.6 gi|307594555|ref|YP_003900872.1| - 0.00011 22.1 0.1 0.00027 20.9 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|307594555|ref|YP_003900872.1| - 0.1 12.7 0.6 0.2 11.7 0.6 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PaREP1 PF05942.11 gi|307594556|ref|YP_003900873.1| - 7e-24 84.0 0.1 8.9e-24 83.6 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family TM_helix PF05552.12 gi|307594557|ref|YP_003900874.1| - 3.5e-09 36.5 11.3 7.9e-05 22.6 0.1 3.3 4 1 0 4 4 4 2 Conserved TM helix Colicin_V PF02674.16 gi|307594557|ref|YP_003900874.1| - 0.00057 19.9 20.0 0.031 14.3 1.3 3.1 1 1 2 3 3 3 3 Colicin V production protein FtsX PF02687.21 gi|307594557|ref|YP_003900874.1| - 1.1 9.8 21.5 1.1 9.8 5.0 3.2 1 1 1 2 2 2 0 FtsX-like permease family Glycos_transf_1 PF00534.20 gi|307594558|ref|YP_003900875.1| - 4e-29 101.3 0.0 6e-29 100.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594558|ref|YP_003900875.1| - 2.3e-19 70.2 0.2 4.4e-19 69.2 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|307594558|ref|YP_003900875.1| - 1.2e-07 32.1 0.0 2.7e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307594558|ref|YP_003900875.1| - 2.5e-07 30.9 2.3 2.9e-07 30.6 0.1 2.3 3 1 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|307594558|ref|YP_003900875.1| - 2e-05 25.1 0.3 8.8e-05 23.0 0.0 2.2 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain DUF4190 PF13828.6 gi|307594560|ref|YP_003900877.1| - 0.072 12.9 1.0 0.072 12.9 1.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4190) RHH_1 PF01402.21 gi|307594561|ref|YP_003900878.1| - 1e-05 25.3 1.3 1e-05 25.3 1.3 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|307594561|ref|YP_003900878.1| - 0.00094 19.1 0.2 0.0058 16.6 0.1 2.2 2 1 0 2 2 2 1 Ribbon-helix-helix domain RHH_4 PF13467.6 gi|307594561|ref|YP_003900878.1| - 0.0033 17.3 0.3 0.0084 16.0 0.2 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix domain CcdA PF07362.12 gi|307594561|ref|YP_003900878.1| - 0.028 14.9 0.1 0.049 14.1 0.1 1.4 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA RepB-RCR_reg PF10723.9 gi|307594561|ref|YP_003900878.1| - 0.044 13.7 0.0 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 Replication regulatory protein RepB RHH_5 PF07878.11 gi|307594561|ref|YP_003900878.1| - 0.068 13.1 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 CopG_antitoxin PF12441.8 gi|307594561|ref|YP_003900878.1| - 0.073 13.6 0.0 0.12 12.9 0.0 1.3 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system Pox_A14 PF05767.12 gi|307594562|ref|YP_003900879.1| - 0.0059 16.7 2.0 0.0076 16.4 2.0 1.2 1 0 0 1 1 1 1 Poxvirus virion envelope protein A14 Mid2 PF04478.12 gi|307594562|ref|YP_003900879.1| - 5.5 6.8 5.4 3.4 7.5 2.8 1.8 1 1 1 2 2 2 0 Mid2 like cell wall stress sensor Archease PF01951.16 gi|307594563|ref|YP_003900880.1| - 7.6e-40 136.3 0.0 8.5e-40 136.2 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) ATPase_2 PF01637.18 gi|307594564|ref|YP_003900881.1| - 8.7e-16 58.5 0.0 1.9e-15 57.4 0.0 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|307594564|ref|YP_003900881.1| - 3.3e-12 47.1 0.1 5.9e-12 46.3 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307594564|ref|YP_003900881.1| - 2e-10 41.1 0.3 5.7e-10 39.6 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|307594564|ref|YP_003900881.1| - 4.8e-08 33.1 0.1 1.8e-06 28.0 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.6 gi|307594564|ref|YP_003900881.1| - 9.3e-07 28.0 0.0 1.7e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain DUF815 PF05673.13 gi|307594564|ref|YP_003900881.1| - 1.9e-06 27.2 0.1 3.4e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|307594564|ref|YP_003900881.1| - 0.00014 21.4 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA PF00004.29 gi|307594564|ref|YP_003900881.1| - 0.00058 20.3 0.0 0.0017 18.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|307594564|ref|YP_003900881.1| - 0.00099 19.1 0.1 0.0019 18.1 0.1 1.5 1 0 0 1 1 1 1 NTPase ABC_tran PF00005.27 gi|307594564|ref|YP_003900881.1| - 0.0015 19.0 0.3 0.027 15.0 0.1 2.2 1 1 1 2 2 2 1 ABC transporter RuvB_N PF05496.12 gi|307594564|ref|YP_003900881.1| - 0.012 15.4 0.4 0.5 10.1 0.0 2.6 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|307594564|ref|YP_003900881.1| - 0.021 14.8 0.1 0.1 12.5 0.1 2.1 1 1 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|307594564|ref|YP_003900881.1| - 0.031 13.6 0.0 0.053 12.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|307594564|ref|YP_003900881.1| - 0.035 14.0 0.0 0.071 13.0 0.0 1.5 1 1 0 1 1 1 0 RsgA GTPase AAA_19 PF13245.6 gi|307594564|ref|YP_003900881.1| - 0.039 14.3 0.0 0.11 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|307594564|ref|YP_003900881.1| - 0.041 13.6 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Helicase_RecD PF05127.14 gi|307594564|ref|YP_003900881.1| - 0.047 13.5 0.0 0.096 12.5 0.0 1.5 1 0 0 1 1 1 0 Helicase CLP1_P PF16575.5 gi|307594564|ref|YP_003900881.1| - 0.13 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop GFRP PF06399.13 gi|307594564|ref|YP_003900881.1| - 0.14 12.1 0.0 20 5.2 0.0 2.4 2 0 0 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) MobB PF03205.14 gi|307594564|ref|YP_003900881.1| - 0.18 11.7 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|307594567|ref|YP_003900884.1| - 2.7e-28 99.2 0.0 3.4e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307594567|ref|YP_003900884.1| - 1.4e-13 51.3 0.2 6.8e-08 32.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307594567|ref|YP_003900884.1| - 6.3e-10 38.9 0.0 7.5e-06 25.5 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|307594567|ref|YP_003900884.1| - 7.6e-05 23.2 0.1 0.00011 22.6 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|307594567|ref|YP_003900884.1| - 0.00028 20.6 0.0 0.00047 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|307594567|ref|YP_003900884.1| - 0.0005 19.8 0.0 0.0021 17.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|307594567|ref|YP_003900884.1| - 0.001 19.0 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|307594567|ref|YP_003900884.1| - 0.0027 18.3 0.0 0.0066 17.0 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|307594567|ref|YP_003900884.1| - 0.0028 18.0 0.8 0.017 15.4 0.8 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|307594567|ref|YP_003900884.1| - 0.0053 17.3 0.3 0.041 14.4 0.3 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|307594567|ref|YP_003900884.1| - 0.0071 16.3 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|307594567|ref|YP_003900884.1| - 0.018 15.4 0.0 0.061 13.7 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|307594567|ref|YP_003900884.1| - 0.02 14.2 0.0 0.053 12.8 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin T2SSE PF00437.20 gi|307594567|ref|YP_003900884.1| - 0.025 13.7 0.0 0.041 12.9 0.0 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.6 gi|307594567|ref|YP_003900884.1| - 0.036 14.3 0.1 0.47 10.7 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|307594567|ref|YP_003900884.1| - 0.041 13.8 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|307594567|ref|YP_003900884.1| - 0.046 13.7 0.0 0.3 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Cytidylate_kin PF02224.18 gi|307594567|ref|YP_003900884.1| - 0.051 13.3 0.2 0.16 11.7 0.1 1.7 1 1 1 2 2 2 0 Cytidylate kinase AAA_33 PF13671.6 gi|307594567|ref|YP_003900884.1| - 0.071 13.3 0.0 0.15 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF3987 PF13148.6 gi|307594567|ref|YP_003900884.1| - 0.088 11.8 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_19 PF13245.6 gi|307594567|ref|YP_003900884.1| - 0.091 13.1 0.1 0.36 11.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|307594567|ref|YP_003900884.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|307594567|ref|YP_003900884.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|307594567|ref|YP_003900884.1| - 0.16 11.3 0.0 3.5 6.9 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|307594567|ref|YP_003900884.1| - 0.19 10.5 0.2 0.64 8.7 0.0 2.0 2 2 1 3 3 3 0 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|307594567|ref|YP_003900884.1| - 0.28 10.8 0.0 1.7 8.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain PMT_2 PF13231.6 gi|307594568|ref|YP_003900885.1| - 0.0067 16.7 13.8 0.0067 16.7 13.8 4.8 3 1 2 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.26 gi|307594569|ref|YP_003900886.1| - 2.3e-33 115.4 0.2 3.2e-33 114.9 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|307594569|ref|YP_003900886.1| - 9.5e-26 91.1 0.0 1.5e-25 90.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|307594569|ref|YP_003900886.1| - 2.4e-14 53.7 1.0 3.5e-14 53.2 1.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|307594569|ref|YP_003900886.1| - 3.7e-10 39.5 0.7 6.9e-10 38.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|307594569|ref|YP_003900886.1| - 3.3e-06 26.8 0.0 5.4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|307594569|ref|YP_003900886.1| - 1.1e-05 25.8 0.6 1.9e-05 25.1 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 SH3_2 PF07653.17 gi|307594569|ref|YP_003900886.1| - 0.12 12.0 0.0 0.3 10.8 0.0 1.7 1 0 0 1 1 1 0 Variant SH3 domain DUF58 PF01882.18 gi|307594570|ref|YP_003900887.1| - 1.7e-11 44.2 0.0 4.2e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|307594571|ref|YP_003900888.1| - 9.1e-40 135.5 0.0 1.5e-39 134.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|307594571|ref|YP_003900888.1| - 1.9e-17 62.8 0.0 3.8e-17 61.9 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|307594571|ref|YP_003900888.1| - 1.1e-15 57.9 0.0 2.6e-15 56.7 0.0 1.6 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|307594571|ref|YP_003900888.1| - 1.3e-06 28.9 0.0 3.7e-06 27.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|307594571|ref|YP_003900888.1| - 1.1e-05 24.9 0.4 0.0049 16.3 0.1 2.4 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|307594571|ref|YP_003900888.1| - 3.1e-05 24.2 0.0 7.5e-05 22.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|307594571|ref|YP_003900888.1| - 0.00043 20.1 0.1 0.0022 17.8 0.1 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|307594571|ref|YP_003900888.1| - 0.00047 20.6 0.0 0.005 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|307594571|ref|YP_003900888.1| - 0.0013 19.3 0.0 0.0025 18.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|307594571|ref|YP_003900888.1| - 0.0015 19.1 0.2 0.035 14.6 0.2 2.3 2 0 0 2 2 2 1 ABC transporter Sigma54_activat PF00158.26 gi|307594571|ref|YP_003900888.1| - 0.0015 18.3 0.1 1.8 8.2 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_29 PF13555.6 gi|307594571|ref|YP_003900888.1| - 0.0017 18.0 0.1 0.0034 17.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|307594571|ref|YP_003900888.1| - 0.0018 18.8 0.1 0.0027 18.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.11 gi|307594571|ref|YP_003900888.1| - 0.0029 16.6 0.2 1.5 7.6 0.1 2.2 2 0 0 2 2 2 2 PrkA AAA domain AAA_22 PF13401.6 gi|307594571|ref|YP_003900888.1| - 0.0044 17.3 0.0 0.014 15.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|307594571|ref|YP_003900888.1| - 0.0053 16.3 0.3 0.76 9.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|307594571|ref|YP_003900888.1| - 0.0055 16.7 0.2 0.01 15.8 0.2 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|307594571|ref|YP_003900888.1| - 0.0067 16.8 0.0 0.025 15.0 0.0 2.0 2 0 0 2 2 2 1 RNA helicase Polyoma_lg_T_C PF06431.11 gi|307594571|ref|YP_003900888.1| - 0.0099 14.8 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 1 Polyomavirus large T antigen C-terminus AAA_8 PF12780.7 gi|307594571|ref|YP_003900888.1| - 0.011 15.1 0.2 0.022 14.1 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 MCM PF00493.23 gi|307594571|ref|YP_003900888.1| - 0.013 14.6 0.1 0.98 8.5 0.0 2.2 2 0 0 2 2 2 0 MCM P-loop domain MCM_lid PF17855.1 gi|307594571|ref|YP_003900888.1| - 0.027 14.9 0.0 0.063 13.7 0.0 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain AAA_30 PF13604.6 gi|307594571|ref|YP_003900888.1| - 0.032 13.9 0.4 0.23 11.2 0.3 2.0 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|307594571|ref|YP_003900888.1| - 0.046 12.8 0.3 0.076 12.1 0.3 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|307594571|ref|YP_003900888.1| - 0.047 13.4 0.1 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_lid_8 PF17868.1 gi|307594571|ref|YP_003900888.1| - 0.047 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA lid domain dNK PF01712.19 gi|307594571|ref|YP_003900888.1| - 0.06 13.2 0.1 0.1 12.4 0.1 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase CBS PF00571.28 gi|307594571|ref|YP_003900888.1| - 0.1 13.0 0.8 0.77 10.3 0.2 2.7 3 0 0 3 3 2 0 CBS domain AAA_33 PF13671.6 gi|307594571|ref|YP_003900888.1| - 0.11 12.6 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|307594571|ref|YP_003900888.1| - 0.13 11.7 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region G-alpha PF00503.20 gi|307594571|ref|YP_003900888.1| - 0.15 11.2 0.0 0.22 10.7 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit NACHT PF05729.12 gi|307594571|ref|YP_003900888.1| - 0.22 11.4 0.4 0.45 10.4 0.4 1.5 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|307594571|ref|YP_003900888.1| - 0.22 11.7 0.2 0.35 11.1 0.2 1.3 1 0 0 1 1 1 0 AAA domain SRTM1 PF15872.5 gi|307594572|ref|YP_003900889.1| - 0.011 15.8 1.3 0.34 11.1 0.1 2.4 2 0 0 2 2 2 0 Serine-rich and transmembrane domain-containing protein 1 OppC_N PF12911.7 gi|307594572|ref|YP_003900889.1| - 0.029 14.3 0.5 0.029 14.3 0.5 2.8 2 1 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF4129 PF13559.6 gi|307594573|ref|YP_003900890.1| - 7.8e-07 29.3 1.7 1.4e-06 28.4 1.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) HpuA PF16960.5 gi|307594573|ref|YP_003900890.1| - 0.00051 19.3 2.6 0.00089 18.5 2.6 1.3 1 0 0 1 1 1 1 Haemoglobin-haptoglobin utilisation, porphyrin transporter Big_6 PF17936.1 gi|307594573|ref|YP_003900890.1| - 0.0023 18.2 0.6 0.026 14.8 0.2 2.6 2 0 0 2 2 2 1 Bacterial Ig domain CarboxypepD_reg PF13620.6 gi|307594573|ref|YP_003900890.1| - 0.0058 16.9 1.2 0.0058 16.9 1.2 2.9 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain Big_7 PF17957.1 gi|307594573|ref|YP_003900890.1| - 0.0076 17.0 0.8 0.0076 17.0 0.8 3.5 2 1 1 3 3 3 1 Bacterial Ig domain CooC_C PF15976.5 gi|307594573|ref|YP_003900890.1| - 0.048 13.7 0.1 0.14 12.2 0.1 1.8 1 0 0 1 1 1 0 CS1-pili formation C-terminal Big_1 PF02369.16 gi|307594573|ref|YP_003900890.1| - 0.065 13.2 0.5 0.065 13.2 0.5 2.3 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) DUF3784 PF12650.7 gi|307594575|ref|YP_003900892.1| - 0.34 11.1 3.3 0.63 10.3 3.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF1616 PF07760.11 gi|307594576|ref|YP_003900893.1| - 7.4e-32 110.9 8.7 1e-31 110.5 8.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1382 PF07131.11 gi|307594576|ref|YP_003900893.1| - 0.19 11.7 0.0 0.4 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1382) DUF1616 PF07760.11 gi|307594577|ref|YP_003900894.1| - 1.9e-12 47.2 0.0 2.9e-12 46.6 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) DUF997 PF06196.12 gi|307594577|ref|YP_003900894.1| - 0.69 10.0 5.8 8.8 6.4 0.1 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF997) Polysacc_synt PF01943.17 gi|307594579|ref|YP_003900896.1| - 4.4e-09 36.1 35.4 4.4e-09 36.1 35.4 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein MLVIN_C PF18697.1 gi|307594580|ref|YP_003900897.1| - 0.14 12.3 0.2 11 6.2 0.1 3.3 3 0 0 3 3 3 0 Murine leukemia virus (MLV) integrase (IN) C-terminal domain ATPase_2 PF01637.18 gi|307594582|ref|YP_003900899.1| - 3.4e-58 197.3 0.0 4.3e-58 197.0 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|307594582|ref|YP_003900899.1| - 0.0037 17.6 0.0 0.0059 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|307594582|ref|YP_003900899.1| - 0.0054 17.2 0.0 0.014 15.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|307594582|ref|YP_003900899.1| - 0.0065 16.9 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307594582|ref|YP_003900899.1| - 0.015 15.6 0.0 0.029 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|307594582|ref|YP_003900899.1| - 0.016 14.9 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|307594582|ref|YP_003900899.1| - 0.03 14.1 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_30 PF13604.6 gi|307594582|ref|YP_003900899.1| - 0.042 13.6 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|307594582|ref|YP_003900899.1| - 0.045 13.8 0.0 0.082 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|307594582|ref|YP_003900899.1| - 0.07 12.3 0.0 0.17 11.0 0.0 1.6 1 1 1 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 NACHT PF05729.12 gi|307594582|ref|YP_003900899.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain TK PF00265.18 gi|307594582|ref|YP_003900899.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.5 1 1 0 1 1 1 0 Thymidine kinase DEDD_Tnp_IS110 PF01548.17 gi|307594582|ref|YP_003900899.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Transposase AAA_33 PF13671.6 gi|307594582|ref|YP_003900899.1| - 0.16 12.2 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|307594582|ref|YP_003900899.1| - 0.17 12.3 0.0 0.22 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|307594582|ref|YP_003900899.1| - 0.19 11.7 0.0 0.45 10.4 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain Adeno_IVa2 PF02456.15 gi|307594582|ref|YP_003900899.1| - 0.21 10.4 0.1 2.5 6.8 0.0 2.0 1 1 1 2 2 2 0 Adenovirus IVa2 protein PaREP1 PF05942.11 gi|307594583|ref|YP_003900900.1| - 1.3e-32 112.2 3.5 1.6e-32 111.9 3.5 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family PS_pyruv_trans PF04230.13 gi|307594585|ref|YP_003900902.1| - 4.9e-23 82.5 0.8 7.1e-23 81.9 0.8 1.3 1 1 0 1 1 1 1 Polysaccharide pyruvyl transferase Sulfatase PF00884.23 gi|307594586|ref|YP_003900903.1| - 0.00052 19.5 0.0 0.0027 17.1 0.0 1.9 2 0 0 2 2 2 1 Sulfatase AAA_18 PF13238.6 gi|307594587|ref|YP_003900904.1| - 1.9e-07 31.7 0.0 0.00096 19.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|307594587|ref|YP_003900904.1| - 0.00018 22.0 0.0 0.00026 21.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307594587|ref|YP_003900904.1| - 0.00061 20.1 0.0 0.0019 18.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|307594587|ref|YP_003900904.1| - 0.0041 17.6 0.0 0.0064 17.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter NTPase_1 PF03266.15 gi|307594587|ref|YP_003900904.1| - 0.0059 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|307594587|ref|YP_003900904.1| - 0.0066 16.2 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|307594587|ref|YP_003900904.1| - 0.0068 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase CbiA PF01656.23 gi|307594587|ref|YP_003900904.1| - 0.0071 16.4 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|307594587|ref|YP_003900904.1| - 0.01 14.8 0.2 0.014 14.3 0.2 1.1 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_19 PF13245.6 gi|307594587|ref|YP_003900904.1| - 0.011 16.0 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|307594587|ref|YP_003900904.1| - 0.021 15.1 0.0 0.043 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|307594587|ref|YP_003900904.1| - 0.022 14.3 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|307594587|ref|YP_003900904.1| - 0.022 14.7 0.0 0.039 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|307594587|ref|YP_003900904.1| - 0.023 14.5 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ATPase_2 PF01637.18 gi|307594587|ref|YP_003900904.1| - 0.026 14.5 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|307594587|ref|YP_003900904.1| - 0.046 13.9 0.0 0.09 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|307594587|ref|YP_003900904.1| - 0.049 13.5 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_29 PF13555.6 gi|307594587|ref|YP_003900904.1| - 0.067 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.9 gi|307594587|ref|YP_003900904.1| - 0.071 12.0 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain cobW PF02492.19 gi|307594587|ref|YP_003900904.1| - 0.072 12.7 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|307594587|ref|YP_003900904.1| - 0.1 11.7 0.5 1.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|307594587|ref|YP_003900904.1| - 0.13 12.6 0.0 0.22 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|307594587|ref|YP_003900904.1| - 0.14 12.2 0.1 0.29 11.2 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.14 gi|307594587|ref|YP_003900904.1| - 0.21 11.5 0.1 0.43 10.5 0.0 1.5 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_PrkA PF08298.11 gi|307594587|ref|YP_003900904.1| - 0.21 10.4 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain Guanylate_kin PF00625.21 gi|307594587|ref|YP_003900904.1| - 0.22 11.2 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 Guanylate kinase Spore_IV_A PF09547.10 gi|307594587|ref|YP_003900904.1| - 0.25 10.2 0.1 0.38 9.6 0.1 1.2 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) Methyltransf_21 PF05050.12 gi|307594588|ref|YP_003900905.1| - 1.3e-14 54.6 0.1 1.8e-14 54.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|307594588|ref|YP_003900905.1| - 0.00039 20.2 0.1 0.00059 19.6 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|307594588|ref|YP_003900905.1| - 0.0056 16.0 0.2 0.016 14.5 0.2 1.7 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein TSKS PF15358.6 gi|307594588|ref|YP_003900905.1| - 0.22 9.8 0.0 0.33 9.3 0.0 1.1 1 0 0 1 1 1 0 Testis-specific serine kinase substrate Glycos_transf_1 PF00534.20 gi|307594589|ref|YP_003900906.1| - 3.9e-14 52.6 0.0 7.5e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|307594589|ref|YP_003900906.1| - 9.6e-12 45.6 0.2 2.4e-11 44.3 0.3 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|307594589|ref|YP_003900906.1| - 2.8e-11 44.0 0.0 6.5e-11 42.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307594589|ref|YP_003900906.1| - 4.9e-11 42.9 1.4 1.2e-10 41.7 1.4 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|307594589|ref|YP_003900906.1| - 8.5e-06 26.1 0.0 3.3e-05 24.2 0.0 2.0 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|307594589|ref|YP_003900906.1| - 0.024 14.6 0.0 0.057 13.4 0.0 1.5 2 0 0 2 2 2 0 Glycosyl transferase 4-like Galactosyl_T PF01762.21 gi|307594589|ref|YP_003900906.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Galactosyltransferase Epimerase PF01370.21 gi|307594590|ref|YP_003900907.1| - 4.3e-62 209.7 0.1 5.6e-62 209.3 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|307594590|ref|YP_003900907.1| - 2.7e-59 201.3 0.0 3.1e-59 201.1 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|307594590|ref|YP_003900907.1| - 8.1e-27 93.9 0.2 1e-26 93.6 0.2 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|307594590|ref|YP_003900907.1| - 3.9e-20 72.2 0.0 1.7e-19 70.1 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|307594590|ref|YP_003900907.1| - 1.8e-17 63.9 0.0 2.6e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|307594590|ref|YP_003900907.1| - 9.4e-17 61.0 0.0 1.3e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|307594590|ref|YP_003900907.1| - 7.8e-13 48.2 0.6 3.1e-11 42.9 0.6 2.5 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|307594590|ref|YP_003900907.1| - 7.2e-11 42.1 0.0 8.3e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|307594590|ref|YP_003900907.1| - 3.9e-10 39.5 0.0 9.6e-07 28.4 0.0 2.4 2 0 0 2 2 2 2 short chain dehydrogenase KR PF08659.10 gi|307594590|ref|YP_003900907.1| - 0.0003 20.8 0.1 0.002 18.1 0.1 2.1 1 1 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 gi|307594590|ref|YP_003900907.1| - 0.0026 17.4 0.0 0.29 10.6 0.0 2.3 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase 3HCDH_N PF02737.18 gi|307594590|ref|YP_003900907.1| - 0.034 14.0 0.0 0.073 12.9 0.0 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|307594590|ref|YP_003900907.1| - 0.036 14.6 0.0 0.076 13.6 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|307594590|ref|YP_003900907.1| - 0.037 14.3 0.0 0.1 12.9 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|307594590|ref|YP_003900907.1| - 0.05 13.8 0.0 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase PHB_acc_N PF07879.11 gi|307594590|ref|YP_003900907.1| - 0.05 13.7 0.0 3.7 7.7 0.0 2.5 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain UDPG_MGDP_dh_C PF03720.15 gi|307594590|ref|YP_003900907.1| - 0.092 13.2 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Glyco_trans_1_4 PF13692.6 gi|307594591|ref|YP_003900908.1| - 7.2e-13 49.1 0.0 1.2e-12 48.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|307594591|ref|YP_003900908.1| - 8.9e-12 44.9 0.0 1.4e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|307594592|ref|YP_003900909.1| - 8.3e-16 58.3 0.1 1.2e-15 57.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|307594592|ref|YP_003900909.1| - 4.8e-07 29.9 0.0 2.5e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|307594592|ref|YP_003900909.1| - 3.9e-05 23.3 0.1 4.7e-05 23.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|307594592|ref|YP_003900909.1| - 0.14 12.7 0.0 0.58 10.7 0.0 2.0 1 1 0 1 1 1 0 Glycosyl transferase family 2 Methyltransf_21 PF05050.12 gi|307594593|ref|YP_003900910.1| - 1.5e-15 57.7 0.1 2.1e-15 57.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|307594593|ref|YP_003900910.1| - 6.1e-09 35.9 0.2 8.8e-09 35.4 0.2 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|307594593|ref|YP_003900910.1| - 0.045 13.2 0.0 0.067 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_22 PF13383.6 gi|307594593|ref|YP_003900910.1| - 0.063 12.8 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_1 PF00534.20 gi|307594594|ref|YP_003900911.1| - 1.1e-14 54.3 0.0 1.4e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594594|ref|YP_003900911.1| - 1.3e-09 38.6 0.0 1.7e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|307594594|ref|YP_003900911.1| - 0.04 14.3 0.0 0.056 13.8 0.0 1.4 1 1 0 1 1 1 0 Glycosyl transferases group 1 Polysacc_synt_3 PF13440.6 gi|307594596|ref|YP_003900913.1| - 3.9e-31 108.4 17.6 3.9e-31 108.4 17.6 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|307594596|ref|YP_003900913.1| - 1.3e-25 90.4 29.4 1.3e-25 90.4 29.4 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|307594596|ref|YP_003900913.1| - 3.8e-08 33.5 51.6 2.8e-06 27.5 25.8 4.0 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|307594596|ref|YP_003900913.1| - 7.5e-08 32.2 15.1 7.5e-08 32.2 15.1 4.0 3 1 0 3 3 3 1 MatE Glyco_tranf_2_3 PF13641.6 gi|307594597|ref|YP_003900914.1| - 7.3e-10 39.1 0.0 1.1e-09 38.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|307594597|ref|YP_003900914.1| - 1.3e-08 34.8 0.0 2.3e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|307594597|ref|YP_003900914.1| - 1.6e-06 27.7 0.0 2.6e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|307594597|ref|YP_003900914.1| - 4.6e-05 23.4 0.0 6.8e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 CRM1_repeat_2 PF18784.1 gi|307594597|ref|YP_003900914.1| - 0.16 11.6 0.0 0.45 10.2 0.0 1.7 1 0 0 1 1 1 0 CRM1 / Exportin repeat 2 Glycos_transf_1 PF00534.20 gi|307594598|ref|YP_003900915.1| - 1.1e-20 73.9 0.1 6.4e-19 68.1 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594598|ref|YP_003900915.1| - 4.5e-09 36.9 0.0 1.8e-08 34.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|307594598|ref|YP_003900915.1| - 0.00033 21.0 0.0 0.00073 19.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Exostosin PF03016.15 gi|307594598|ref|YP_003900915.1| - 0.035 13.3 0.0 0.052 12.8 0.0 1.2 1 0 0 1 1 1 0 Exostosin family Glycos_transf_2 PF00535.26 gi|307594599|ref|YP_003900916.1| - 5.2e-08 32.9 0.0 5.5e-08 32.8 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferase family 2 CAP59_mtransfer PF11735.8 gi|307594599|ref|YP_003900916.1| - 0.0047 16.6 0.1 0.0049 16.6 0.1 1.0 1 0 0 1 1 1 1 Cryptococcal mannosyltransferase 1 Glycos_transf_1 PF00534.20 gi|307594601|ref|YP_003900918.1| - 1.2e-08 34.6 0.1 3.1e-08 33.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594601|ref|YP_003900918.1| - 1.4e-07 32.0 0.0 2.9e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Polysacc_deac_1 PF01522.21 gi|307594602|ref|YP_003900919.1| - 1.4e-22 79.9 0.0 2.5e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_1 PF00534.20 gi|307594603|ref|YP_003900920.1| - 3.7e-32 111.2 0.1 5.3e-32 110.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594603|ref|YP_003900920.1| - 2.7e-28 99.0 0.1 4.3e-28 98.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307594603|ref|YP_003900920.1| - 2.1e-12 47.4 0.0 3.9e-11 43.2 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|307594603|ref|YP_003900920.1| - 3e-06 27.5 0.0 6.6e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|307594603|ref|YP_003900920.1| - 9.6e-05 22.4 0.0 0.00024 21.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|307594603|ref|YP_003900920.1| - 0.0078 15.9 0.0 0.034 13.8 0.0 1.8 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|307594603|ref|YP_003900920.1| - 0.0085 16.5 0.0 0.061 13.8 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Ago_N_1 PF18351.1 gi|307594603|ref|YP_003900920.1| - 0.095 13.1 0.1 3.4 8.2 0.0 2.5 2 0 0 2 2 2 0 Fungal Argonaute N-terminal domain Glycos_transf_1 PF00534.20 gi|307594606|ref|YP_003900923.1| - 8.8e-23 80.7 0.0 1.4e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594606|ref|YP_003900923.1| - 2.1e-16 60.6 0.0 3.6e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307594606|ref|YP_003900923.1| - 3.6e-13 49.9 0.1 7.9e-13 48.8 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 TetR_C_8 PF14278.6 gi|307594606|ref|YP_003900923.1| - 0.86 9.8 4.7 0.95 9.6 0.0 2.7 3 0 0 3 3 3 0 Transcriptional regulator C-terminal region PaREP1 PF05942.11 gi|307594610|ref|YP_003900927.1| - 2.9e-30 104.6 0.9 4.1e-30 104.0 0.3 1.5 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family ATPase_2 PF01637.18 gi|307594611|ref|YP_003900928.1| - 7.7e-58 196.2 0.0 9.8e-58 195.8 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|307594611|ref|YP_003900928.1| - 0.056 13.7 0.0 0.093 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|307594611|ref|YP_003900928.1| - 0.091 11.9 0.0 0.19 10.9 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_24 PF13479.6 gi|307594611|ref|YP_003900928.1| - 0.13 11.9 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|307594611|ref|YP_003900928.1| - 0.15 10.8 0.0 0.53 9.0 0.0 1.8 2 0 0 2 2 2 0 Adenovirus IVa2 protein ATPase_2 PF01637.18 gi|307594612|ref|YP_003900929.1| - 4.4e-55 187.1 0.0 6.6e-55 186.6 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|307594612|ref|YP_003900929.1| - 0.0074 16.7 0.0 0.016 15.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain SieB PF14163.6 gi|307594612|ref|YP_003900929.1| - 0.05 13.1 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Super-infection exclusion protein B AAA PF00004.29 gi|307594612|ref|YP_003900929.1| - 0.079 13.4 0.1 0.33 11.4 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|307594612|ref|YP_003900929.1| - 0.095 12.7 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|307594612|ref|YP_003900929.1| - 0.13 12.6 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|307594612|ref|YP_003900929.1| - 0.2 11.4 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|307594613|ref|YP_003900930.1| - 7.5e-55 186.4 0.0 2.5e-54 184.7 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|307594613|ref|YP_003900930.1| - 0.049 14.1 0.0 0.25 11.8 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|307594613|ref|YP_003900930.1| - 0.095 13.0 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|307594613|ref|YP_003900930.1| - 0.15 12.2 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|307594613|ref|YP_003900930.1| - 0.2 11.4 0.0 0.39 10.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|307594614|ref|YP_003900931.1| - 2e-55 188.2 0.0 3e-55 187.7 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|307594614|ref|YP_003900931.1| - 0.018 15.5 0.0 0.028 14.8 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|307594614|ref|YP_003900931.1| - 0.033 14.6 0.0 0.069 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|307594614|ref|YP_003900931.1| - 0.06 13.6 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|307594615|ref|YP_003900932.1| - 1.8e-57 195.0 0.0 3.1e-57 194.2 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|307594615|ref|YP_003900932.1| - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|307594615|ref|YP_003900932.1| - 0.012 15.9 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|307594615|ref|YP_003900932.1| - 0.013 16.0 0.0 0.028 14.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|307594615|ref|YP_003900932.1| - 0.021 14.8 0.0 0.046 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|307594615|ref|YP_003900932.1| - 0.028 14.0 0.3 0.14 11.7 0.3 2.0 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|307594615|ref|YP_003900932.1| - 0.19 10.8 0.0 0.43 9.7 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Glycos_transf_2 PF00535.26 gi|307594618|ref|YP_003900935.1| - 4.2e-21 75.5 0.0 7.8e-21 74.6 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|307594618|ref|YP_003900935.1| - 1.3e-06 28.4 0.4 2e-06 27.9 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Phage_holin_3_6 PF07332.11 gi|307594618|ref|YP_003900935.1| - 0.11 12.5 2.3 0.22 11.6 2.3 1.4 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III HAD_2 PF13419.6 gi|307594619|ref|YP_003900936.1| - 5.1e-11 43.0 0.0 6.1e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|307594619|ref|YP_003900936.1| - 1e-08 35.8 0.0 2.7e-06 27.8 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|307594619|ref|YP_003900936.1| - 0.0024 17.9 0.0 0.0048 16.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like NadA PF02445.16 gi|307594624|ref|YP_003900941.1| - 7.4e-99 330.7 0.0 8.7e-99 330.4 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein GARS_N PF02844.15 gi|307594624|ref|YP_003900941.1| - 0.015 16.1 0.1 1.1 10.1 0.0 3.1 1 1 2 3 3 3 0 Phosphoribosylglycinamide synthetase, N domain FleQ PF06490.11 gi|307594624|ref|YP_003900941.1| - 0.038 14.4 0.0 0.98 9.8 0.0 3.0 3 1 0 3 3 3 0 Flagellar regulatory protein FleQ Sua5_yciO_yrdC PF01300.18 gi|307594624|ref|YP_003900941.1| - 0.071 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Telomere recombination FAD_binding_2 PF00890.24 gi|307594625|ref|YP_003900942.1| - 5.5e-76 256.3 1.4 7.2e-76 255.9 1.4 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|307594625|ref|YP_003900942.1| - 1.1e-11 45.0 4.5 1.3e-09 38.1 4.4 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.20 gi|307594625|ref|YP_003900942.1| - 1.1e-10 41.6 0.1 1.6e-08 34.6 0.1 2.4 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|307594625|ref|YP_003900942.1| - 1.5e-09 37.5 0.1 1.9e-05 24.1 0.1 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|307594625|ref|YP_003900942.1| - 9.9e-06 24.9 1.2 0.025 13.7 0.9 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|307594625|ref|YP_003900942.1| - 0.00042 19.1 0.2 0.066 11.9 0.1 2.4 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|307594625|ref|YP_003900942.1| - 0.012 15.8 1.7 0.042 14.1 1.7 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|307594625|ref|YP_003900942.1| - 0.014 14.2 0.8 3.8 6.2 0.3 2.3 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.27 gi|307594625|ref|YP_003900942.1| - 0.043 14.4 1.2 0.15 12.6 0.3 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|307594625|ref|YP_003900942.1| - 0.078 12.3 0.9 0.13 11.6 0.9 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase QRPTase_C PF01729.19 gi|307594626|ref|YP_003900943.1| - 3e-59 199.6 0.1 3.7e-59 199.3 0.1 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|307594626|ref|YP_003900943.1| - 3.9e-21 74.9 0.0 9.2e-21 73.7 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Lambda_tail_I PF06805.12 gi|307594626|ref|YP_003900943.1| - 0.058 13.7 0.0 0.3 11.4 0.0 2.1 2 0 0 2 2 2 0 Bacteriophage lambda tail assembly protein I PRAI PF00697.22 gi|307594626|ref|YP_003900943.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MFS_1 PF07690.16 gi|307594627|ref|YP_003900944.1| - 6.1e-17 61.6 52.3 7.1e-17 61.4 45.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|307594627|ref|YP_003900944.1| - 2.5 6.4 16.8 3.3 6.0 1.4 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector AFOR_C PF01314.18 gi|307594628|ref|YP_003900945.1| - 2e-99 333.2 0.0 2.4e-99 332.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|307594628|ref|YP_003900945.1| - 2.4e-69 233.2 0.1 4.3e-69 232.4 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain CoA_trans PF01144.23 gi|307594630|ref|YP_003900947.1| - 7.7e-31 107.2 0.4 1.4e-25 90.0 0.0 3.2 3 1 0 3 3 3 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|307594630|ref|YP_003900947.1| - 0.00055 18.4 0.0 0.00083 17.8 0.0 1.2 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter Spermine_synth PF01564.17 gi|307594631|ref|YP_003900948.1| - 2.6e-48 163.9 0.0 3.7e-48 163.4 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|307594631|ref|YP_003900948.1| - 3.9e-10 39.5 0.0 7.4e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|307594631|ref|YP_003900948.1| - 1.9e-05 25.3 0.0 6.3e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|307594631|ref|YP_003900948.1| - 0.0016 19.1 0.0 0.003 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|307594631|ref|YP_003900948.1| - 0.0064 15.8 0.2 0.02 14.1 0.1 1.8 1 1 1 2 2 2 1 Branched-chain polyamine synthase A C-terminal domain Cons_hypoth95 PF03602.15 gi|307594631|ref|YP_003900948.1| - 0.019 14.6 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_30 PF05430.11 gi|307594631|ref|YP_003900948.1| - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 2 0 0 2 2 2 0 S-adenosyl-L-methionine-dependent methyltransferase UPF0146 PF03686.13 gi|307594631|ref|YP_003900948.1| - 0.12 12.2 0.2 20 5.0 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0146) Methyltransf_2 PF00891.18 gi|307594631|ref|YP_003900948.1| - 0.13 11.6 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_11 PF08241.12 gi|307594631|ref|YP_003900948.1| - 0.17 12.6 0.0 0.4 11.4 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|307594631|ref|YP_003900948.1| - 0.2 11.2 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Aminotran_3 PF00202.21 gi|307594632|ref|YP_003900949.1| - 2.3e-95 319.6 0.0 2.8e-95 319.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Pab87_oct PF13969.6 gi|307594632|ref|YP_003900949.1| - 0.042 13.9 0.0 3.6 7.7 0.0 2.9 3 0 0 3 3 3 0 Pab87 octamerisation domain Methyltransf_11 PF08241.12 gi|307594633|ref|YP_003900950.1| - 2e-19 70.0 0.0 3.3e-19 69.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307594633|ref|YP_003900950.1| - 1.3e-16 61.1 0.0 2.6e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|307594633|ref|YP_003900950.1| - 3.9e-15 56.1 0.0 5.1e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307594633|ref|YP_003900950.1| - 1.3e-11 44.6 0.0 1.9e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|307594633|ref|YP_003900950.1| - 3.3e-10 40.6 0.0 5.5e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|307594633|ref|YP_003900950.1| - 8.6e-08 31.8 0.0 1.2e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|307594633|ref|YP_003900950.1| - 0.00018 21.0 0.0 0.0003 20.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 gi|307594633|ref|YP_003900950.1| - 0.0007 19.2 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW FtsJ PF01728.19 gi|307594633|ref|YP_003900950.1| - 0.0013 18.9 0.0 0.002 18.2 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.14 gi|307594633|ref|YP_003900950.1| - 0.022 14.3 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain UPF0180 PF03698.13 gi|307594633|ref|YP_003900950.1| - 0.078 13.2 0.0 15 5.9 0.0 2.9 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0180) PCMT PF01135.19 gi|307594633|ref|YP_003900950.1| - 0.12 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|307594633|ref|YP_003900950.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase NTP_transf_5 PF14907.6 gi|307594634|ref|YP_003900951.1| - 4.4e-06 26.5 0.0 6.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase UDPGP PF01704.18 gi|307594634|ref|YP_003900951.1| - 0.11 11.1 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 UTP--glucose-1-phosphate uridylyltransferase ATPase_2 PF01637.18 gi|307594635|ref|YP_003900952.1| - 7.5e-11 42.4 0.0 1.3e-10 41.6 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|307594635|ref|YP_003900952.1| - 5.1e-06 27.0 0.0 1.2e-05 25.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307594635|ref|YP_003900952.1| - 4.9e-05 23.6 0.0 0.00012 22.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|307594635|ref|YP_003900952.1| - 0.00015 21.4 0.0 0.0003 20.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|307594635|ref|YP_003900952.1| - 0.0017 18.2 0.0 0.0047 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Adeno_IVa2 PF02456.15 gi|307594635|ref|YP_003900952.1| - 0.012 14.4 0.0 0.021 13.6 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA PF00004.29 gi|307594635|ref|YP_003900952.1| - 0.017 15.6 0.0 0.1 13.0 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|307594635|ref|YP_003900952.1| - 0.021 14.8 0.0 0.042 13.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|307594635|ref|YP_003900952.1| - 0.032 14.3 0.0 0.088 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|307594635|ref|YP_003900952.1| - 0.039 14.0 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|307594635|ref|YP_003900952.1| - 0.04 13.3 0.0 0.073 12.4 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_23 PF13476.6 gi|307594635|ref|YP_003900952.1| - 0.04 14.4 0.0 0.062 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|307594635|ref|YP_003900952.1| - 0.074 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|307594635|ref|YP_003900952.1| - 0.12 12.7 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Acyltransferase PF01553.21 gi|307594636|ref|YP_003900953.1| - 0.09 12.4 0.0 0.09 12.4 0.0 1.1 1 0 0 1 1 1 0 Acyltransferase DUF86 PF01934.17 gi|307594637|ref|YP_003900954.1| - 2.3e-22 79.1 0.1 2.7e-22 78.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|307594638|ref|YP_003900955.1| - 8e-10 38.7 0.0 1.4e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|307594638|ref|YP_003900955.1| - 3.8e-05 23.9 0.1 5.4e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain PQQ_2 PF13360.6 gi|307594639|ref|YP_003900956.1| - 0.04 13.5 0.0 0.83 9.2 0.0 2.4 2 0 0 2 2 2 0 PQQ-like domain DUF5420 PF17457.2 gi|307594639|ref|YP_003900956.1| - 0.23 11.3 0.3 0.59 10.0 0.1 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5420) Ribosomal_S30 PF04758.14 gi|307594641|ref|YP_003900958.1| - 1.1e-09 38.3 1.9 1.7e-09 37.7 1.9 1.3 1 1 0 1 1 1 1 Ribosomal protein S30 LAGLIDADG_3 PF14528.6 gi|307594642|ref|YP_003900959.1| - 0.00021 21.6 0.7 0.042 14.2 0.1 3.6 4 1 0 4 4 4 1 LAGLIDADG-like domain LAGLIDADG_2 PF03161.13 gi|307594642|ref|YP_003900959.1| - 0.00094 19.2 1.2 0.28 11.2 0.1 2.8 2 1 1 3 3 3 2 LAGLIDADG DNA endonuclease family LAGLIDADG_WhiA PF14527.6 gi|307594642|ref|YP_003900959.1| - 0.071 13.2 0.1 0.33 11.1 0.1 2.1 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain POTRA_2 PF08479.11 gi|307594642|ref|YP_003900959.1| - 0.15 11.9 0.1 0.35 10.7 0.1 1.5 1 0 0 1 1 1 0 POTRA domain, ShlB-type Asp_protease_2 PF13650.6 gi|307594643|ref|YP_003900960.1| - 1.3e-08 35.4 0.7 1.8e-08 34.9 0.7 1.4 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|307594643|ref|YP_003900960.1| - 3.5e-08 33.9 0.3 5.3e-08 33.3 0.3 1.4 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|307594643|ref|YP_003900960.1| - 0.0001 22.5 0.1 0.00026 21.2 0.1 1.7 1 1 0 1 1 1 1 Retroviral aspartyl protease Asp PF00026.23 gi|307594643|ref|YP_003900960.1| - 0.0099 15.3 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 Eukaryotic aspartyl protease DUF257 PF03192.13 gi|307594643|ref|YP_003900960.1| - 0.016 15.1 0.2 0.024 14.4 0.2 1.2 1 0 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 DUF3809 PF12723.7 gi|307594643|ref|YP_003900960.1| - 0.027 14.7 1.1 1 9.6 0.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3809) HEPN PF05168.14 gi|307594644|ref|YP_003900961.1| - 2.2e-34 118.1 0.1 2.7e-34 117.8 0.1 1.0 1 0 0 1 1 1 1 HEPN domain T3SS_needle_E PF08988.10 gi|307594644|ref|YP_003900961.1| - 0.019 15.1 3.1 1.3 9.2 0.1 2.5 2 1 0 2 2 2 0 Type III secretion system, cytoplasmic E component of needle NTP_transf_2 PF01909.23 gi|307594645|ref|YP_003900962.1| - 5.4e-09 36.2 0.0 6.2e-09 36.0 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|307594645|ref|YP_003900962.1| - 1e-06 28.8 0.0 1.4e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase AAA_21 PF13304.6 gi|307594648|ref|YP_003900965.1| - 5.7e-25 88.7 1.6 9.7e-24 84.7 1.6 2.1 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|307594648|ref|YP_003900965.1| - 1.5e-17 64.3 0.0 5.9e-11 42.7 0.2 2.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_27 PF13514.6 gi|307594648|ref|YP_003900965.1| - 2.1e-08 34.0 0.0 3.5e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|307594648|ref|YP_003900965.1| - 1.1e-07 32.5 0.2 1.7e-07 32.0 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|307594648|ref|YP_003900965.1| - 1.4e-05 24.7 0.0 3.3e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|307594648|ref|YP_003900965.1| - 0.00043 20.8 0.1 0.02 15.4 0.1 2.8 2 2 0 2 2 2 1 ABC transporter DUF2813 PF11398.8 gi|307594648|ref|YP_003900965.1| - 0.0017 17.7 0.2 0.047 13.0 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) PYC_OADA PF02436.18 gi|307594648|ref|YP_003900965.1| - 0.0041 16.9 0.0 0.0069 16.2 0.0 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain MMR_HSR1 PF01926.23 gi|307594648|ref|YP_003900965.1| - 0.02 15.0 0.2 0.054 13.6 0.2 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|307594648|ref|YP_003900965.1| - 0.027 13.9 0.0 0.085 12.3 0.0 1.9 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Sld5 PF05916.11 gi|307594651|ref|YP_003900968.1| - 0.00021 21.7 0.3 0.00026 21.4 0.3 1.1 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.23 gi|307594652|ref|YP_003900969.1| - 5.4e-103 342.9 0.0 9.1e-103 342.2 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|307594652|ref|YP_003900969.1| - 6.2e-37 126.3 0.0 1.3e-36 125.3 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|307594652|ref|YP_003900969.1| - 1.1e-30 105.8 2.0 1.1e-30 105.8 2.0 2.1 2 0 0 2 2 2 1 MCM AAA-lid domain MCM_N PF14551.6 gi|307594652|ref|YP_003900969.1| - 1.1e-10 42.1 0.1 2.7e-10 40.8 0.1 1.6 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|307594652|ref|YP_003900969.1| - 2.4e-09 36.9 0.1 3.7e-06 26.5 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|307594652|ref|YP_003900969.1| - 6.6e-08 32.5 0.0 1.5e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|307594652|ref|YP_003900969.1| - 1.5e-05 25.0 0.0 4.4e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.10 gi|307594652|ref|YP_003900969.1| - 0.00042 20.4 1.3 0.00086 19.4 1.3 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Sigma54_activat PF00158.26 gi|307594652|ref|YP_003900969.1| - 0.0048 16.6 0.1 0.024 14.4 0.1 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AbiEi_4 PF13338.6 gi|307594652|ref|YP_003900969.1| - 0.011 15.9 0.0 0.052 13.7 0.0 2.2 2 0 0 2 2 1 0 Transcriptional regulator, AbiEi antitoxin AAA_16 PF13191.6 gi|307594652|ref|YP_003900969.1| - 0.011 16.1 0.5 0.062 13.7 0.3 2.5 1 1 0 1 1 1 0 AAA ATPase domain HypA PF01155.19 gi|307594652|ref|YP_003900969.1| - 0.012 15.6 0.2 0.025 14.6 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|307594652|ref|YP_003900969.1| - 0.014 15.4 0.4 0.024 14.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon AAA PF00004.29 gi|307594652|ref|YP_003900969.1| - 0.015 15.8 0.1 0.065 13.7 0.0 2.2 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Rubredoxin_2 PF18073.1 gi|307594652|ref|YP_003900969.1| - 0.032 14.0 3.7 2.7 7.8 1.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain RuvB_N PF05496.12 gi|307594652|ref|YP_003900969.1| - 0.036 13.8 0.4 0.17 11.6 0.4 2.1 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NTPase_1 PF03266.15 gi|307594652|ref|YP_003900969.1| - 0.036 14.0 0.8 2.3 8.1 0.5 2.6 1 1 1 2 2 2 0 NTPase zinc_ribbon_2 PF13240.6 gi|307594652|ref|YP_003900969.1| - 0.066 12.9 2.5 7.3 6.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain AAA_22 PF13401.6 gi|307594652|ref|YP_003900969.1| - 0.1 12.9 0.3 6 7.1 0.2 3.2 2 1 0 2 2 2 0 AAA domain TF_Zn_Ribbon PF08271.12 gi|307594652|ref|YP_003900969.1| - 0.13 11.8 0.4 19 4.9 0.1 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding Ric8 PF10165.9 gi|307594652|ref|YP_003900969.1| - 0.16 11.0 0.0 0.28 10.2 0.0 1.4 1 0 0 1 1 1 0 Guanine nucleotide exchange factor synembryn AAA_30 PF13604.6 gi|307594652|ref|YP_003900969.1| - 0.17 11.6 1.9 0.41 10.3 1.9 1.5 1 0 0 1 1 1 0 AAA domain zf-ribbon_3 PF13248.6 gi|307594652|ref|YP_003900969.1| - 0.3 10.6 3.7 2.2 7.8 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|307594652|ref|YP_003900969.1| - 0.37 10.7 3.9 0.33 10.8 0.2 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_10 PF10058.9 gi|307594652|ref|YP_003900969.1| - 0.38 10.5 1.6 62 3.4 0.0 3.3 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-tcix PF14952.6 gi|307594652|ref|YP_003900969.1| - 0.76 9.4 2.0 1.9 8.2 0.5 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding LnmK_N_HDF PF18238.1 gi|307594653|ref|YP_003900970.1| - 0.057 13.2 0.0 0.075 12.8 0.0 1.2 1 0 0 1 1 1 0 LnmK N-terminal Hot Dog Fold domain Fer4_21 PF14697.6 gi|307594654|ref|YP_003900971.1| - 1.9e-10 40.7 6.7 2.8e-10 40.1 6.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307594654|ref|YP_003900971.1| - 1.1e-08 34.5 17.1 4e-05 23.2 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307594654|ref|YP_003900971.1| - 1.9e-06 27.9 7.4 3.2e-06 27.2 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307594654|ref|YP_003900971.1| - 2.9e-06 28.1 3.4 0.0089 16.9 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|307594654|ref|YP_003900971.1| - 9.6e-06 26.1 10.0 1.9e-05 25.1 10.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307594654|ref|YP_003900971.1| - 1.3e-05 25.7 2.1 0.078 13.5 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307594654|ref|YP_003900971.1| - 0.00049 20.2 12.0 0.0041 17.2 12.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307594654|ref|YP_003900971.1| - 0.00092 19.2 14.6 0.14 12.3 4.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|307594654|ref|YP_003900971.1| - 0.0011 19.5 1.7 0.0011 19.5 1.7 3.1 4 0 0 4 4 4 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|307594654|ref|YP_003900971.1| - 0.0033 17.9 11.4 0.22 12.0 2.5 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307594654|ref|YP_003900971.1| - 0.0064 17.2 5.7 0.44 11.3 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|307594654|ref|YP_003900971.1| - 0.0076 16.3 14.3 0.39 10.9 5.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|307594654|ref|YP_003900971.1| - 0.011 16.5 1.3 1.3 9.9 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307594654|ref|YP_003900971.1| - 0.016 15.7 9.7 0.083 13.4 1.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307594654|ref|YP_003900971.1| - 3 9.0 16.4 2.6 9.2 6.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|307594655|ref|YP_003900972.1| - 1.1e-51 175.8 0.1 1.5e-51 175.4 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|307594655|ref|YP_003900972.1| - 1.4e-33 115.2 0.1 3.5e-33 113.9 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|307594655|ref|YP_003900972.1| - 8.8e-05 22.4 0.0 0.00035 20.5 0.0 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|307594655|ref|YP_003900972.1| - 0.0051 16.5 0.2 0.011 15.4 0.2 1.6 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|307594656|ref|YP_003900973.1| - 5.9e-15 55.4 0.4 8.2e-15 54.9 0.4 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|307594656|ref|YP_003900973.1| - 0.035 13.3 0.3 0.089 12.0 0.2 1.5 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase DUF4992 PF16383.5 gi|307594656|ref|YP_003900973.1| - 0.092 12.3 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function MFS_1 PF07690.16 gi|307594657|ref|YP_003900974.1| - 1.3e-22 80.2 63.2 1.3e-15 57.2 34.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily FeoB_C PF07664.12 gi|307594657|ref|YP_003900974.1| - 0.84 9.4 0.0 0.84 9.4 0.0 4.1 5 1 0 5 5 5 0 Ferrous iron transport protein B C terminus FAD-oxidase_C PF02913.19 gi|307594658|ref|YP_003900975.1| - 1.3e-64 218.2 0.0 1.8e-64 217.8 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|307594658|ref|YP_003900975.1| - 2.2e-39 134.4 0.6 1.2e-38 132.0 0.6 2.2 1 1 0 1 1 1 1 FAD binding domain LppA PF16708.5 gi|307594658|ref|YP_003900975.1| - 0.18 11.7 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Lipoprotein confined to pathogenic Mycobacterium FAD_binding_4 PF01565.23 gi|307594659|ref|YP_003900976.1| - 1.2e-19 70.4 0.0 1.8e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|307594659|ref|YP_003900976.1| - 0.0014 18.3 0.0 0.0083 15.8 0.0 2.0 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain WYL PF13280.6 gi|307594659|ref|YP_003900976.1| - 0.0086 16.1 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 WYL domain CCG PF02754.16 gi|307594660|ref|YP_003900977.1| - 3.1e-22 78.6 0.0 1.2e-09 38.3 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|307594660|ref|YP_003900977.1| - 7.3e-12 45.6 4.0 7.3e-12 45.6 4.0 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307594660|ref|YP_003900977.1| - 1.7e-11 44.5 3.8 4.2e-11 43.2 3.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307594660|ref|YP_003900977.1| - 1.8e-11 44.4 5.1 4.7e-11 43.1 5.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307594660|ref|YP_003900977.1| - 5.4e-07 29.6 1.9 0.0057 16.8 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307594660|ref|YP_003900977.1| - 1.7e-05 24.4 13.0 0.0087 15.8 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|307594660|ref|YP_003900977.1| - 6.7e-05 22.8 12.8 0.023 14.8 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307594660|ref|YP_003900977.1| - 0.0003 20.9 10.2 0.0092 16.1 11.3 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307594660|ref|YP_003900977.1| - 0.00074 19.8 13.1 0.14 12.7 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307594660|ref|YP_003900977.1| - 0.0036 17.3 15.0 0.03 14.4 2.1 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|307594660|ref|YP_003900977.1| - 0.0047 17.8 9.3 0.023 15.6 9.4 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|307594660|ref|YP_003900977.1| - 0.0056 16.9 0.9 2.9 8.1 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|307594660|ref|YP_003900977.1| - 0.25 11.1 2.9 6.6 6.5 0.2 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|307594660|ref|YP_003900977.1| - 1.1 9.4 16.8 2.7 8.2 11.9 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|307594660|ref|YP_003900977.1| - 1.4 9.8 11.4 2.8 8.8 1.5 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|307594660|ref|YP_003900977.1| - 3.6 8.7 17.4 6.4 8.0 4.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain GHMP_kinases_N PF00288.26 gi|307594661|ref|YP_003900978.1| - 2.7e-15 56.3 3.3 5.9e-15 55.3 2.9 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|307594661|ref|YP_003900978.1| - 1.6e-10 41.2 0.1 4.4e-10 39.8 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal DAO PF01266.24 gi|307594662|ref|YP_003900979.1| - 5.3e-16 59.1 0.2 8.9e-16 58.4 0.2 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|307594662|ref|YP_003900979.1| - 8.5e-06 25.2 0.1 0.00011 21.6 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|307594662|ref|YP_003900979.1| - 0.0042 16.4 0.1 0.0081 15.5 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Imm5 PF14423.6 gi|307594662|ref|YP_003900979.1| - 0.024 14.9 0.1 0.034 14.4 0.1 1.1 1 0 0 1 1 1 0 Immunity protein Imm5 Pyr_redox PF00070.27 gi|307594662|ref|YP_003900979.1| - 0.047 14.2 0.9 0.16 12.6 0.9 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|307594662|ref|YP_003900979.1| - 0.076 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DEAD PF00270.29 gi|307594663|ref|YP_003900980.1| - 9.6e-27 93.9 0.1 5.8e-26 91.3 0.1 2.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|307594663|ref|YP_003900980.1| - 3e-14 53.4 0.1 3e-14 53.4 0.1 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|307594663|ref|YP_003900980.1| - 3.3e-10 40.3 0.0 1.5e-08 34.9 0.0 3.0 2 1 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|307594663|ref|YP_003900980.1| - 3.9e-09 36.8 0.0 5.9e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|307594663|ref|YP_003900980.1| - 9.8e-06 25.6 0.0 6.5e-05 23.0 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|307594663|ref|YP_003900980.1| - 4.9e-05 23.1 0.0 0.00023 20.9 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda SNF2_N PF00176.23 gi|307594663|ref|YP_003900980.1| - 0.0048 15.7 0.1 0.0075 15.0 0.1 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Cdd1 PF11731.8 gi|307594663|ref|YP_003900980.1| - 0.17 12.2 0.0 0.52 10.6 0.0 1.8 2 0 0 2 2 2 0 Pathogenicity locus NTP_transferase PF00483.23 gi|307594664|ref|YP_003900981.1| - 7.4e-28 97.8 0.0 9e-28 97.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|307594664|ref|YP_003900981.1| - 2.3e-07 31.3 0.0 3.2e-07 30.8 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glyco_trans_1_4 PF13692.6 gi|307594665|ref|YP_003900982.1| - 2.4e-16 60.4 0.0 3.9e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|307594665|ref|YP_003900982.1| - 3.6e-14 52.7 0.0 1.1e-13 51.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|307594665|ref|YP_003900982.1| - 6.1e-07 29.7 0.0 9.4e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Peptidase_M20 PF01546.28 gi|307594666|ref|YP_003900983.1| - 5.3e-38 130.8 0.0 6.6e-38 130.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|307594666|ref|YP_003900983.1| - 4.4e-12 45.9 0.0 9.5e-12 44.8 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|307594666|ref|YP_003900983.1| - 0.0029 17.3 0.0 0.0061 16.3 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|307594666|ref|YP_003900983.1| - 0.0083 15.2 0.0 0.063 12.3 0.0 2.0 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Sugar_tr PF00083.24 gi|307594667|ref|YP_003900984.1| - 5.9e-95 318.8 28.3 7e-95 318.5 28.3 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|307594667|ref|YP_003900984.1| - 1.3e-32 113.2 40.3 1.3e-32 113.2 40.3 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|307594667|ref|YP_003900984.1| - 1.1e-06 27.4 2.6 1.1e-06 27.4 2.6 1.9 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) DUF1129 PF06570.11 gi|307594667|ref|YP_003900984.1| - 0.075 12.5 9.1 0.013 15.0 4.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Ribosomal_L22 PF00237.19 gi|307594668|ref|YP_003900985.1| - 4.2e-25 88.0 0.0 5.7e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Formyl_trans_C PF02911.18 gi|307594668|ref|YP_003900985.1| - 0.074 13.3 1.3 1.1 9.5 0.1 2.4 2 1 0 2 2 2 0 Formyl transferase, C-terminal domain PIN_6 PF17146.4 gi|307594669|ref|YP_003900986.1| - 0.00016 22.1 1.3 0.0014 19.1 1.3 2.0 1 1 0 1 1 1 1 PIN domain of ribonuclease NAD_kinase PF01513.21 gi|307594670|ref|YP_003900987.1| - 4.9e-36 124.4 2.7 6.7e-36 124.0 2.7 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|307594670|ref|YP_003900987.1| - 0.0033 17.0 0.0 0.0062 16.2 0.0 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain eIF-5a PF01287.20 gi|307594671|ref|YP_003900988.1| - 6.6e-08 32.5 0.1 1.1e-07 31.8 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|307594671|ref|YP_003900988.1| - 2.8e-07 30.5 0.1 6.9e-07 29.2 0.1 1.6 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|307594671|ref|YP_003900988.1| - 0.0011 19.0 0.1 0.0026 17.7 0.0 1.7 2 0 0 2 2 2 1 Elongation factor P (EF-P) OB domain DUF655 PF04919.12 gi|307594672|ref|YP_003900989.1| - 5.2e-60 202.5 0.3 6e-60 202.3 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|307594672|ref|YP_003900989.1| - 2.3e-05 24.6 0.0 0.00015 22.0 0.0 2.0 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|307594672|ref|YP_003900989.1| - 0.0043 17.3 0.0 0.0088 16.3 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif mIF3 PF14877.6 gi|307594672|ref|YP_003900989.1| - 0.03 14.0 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial translation initiation factor HTH_Tnp_Tc3_2 PF01498.18 gi|307594672|ref|YP_003900989.1| - 0.11 12.8 0.0 1.8 8.8 0.0 2.2 2 0 0 2 2 2 0 Transposase RNA_pol_Rpb4 PF03874.16 gi|307594673|ref|YP_003900990.1| - 1.9e-15 57.3 0.4 2.2e-15 57.1 0.4 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 HHH_5 PF14520.6 gi|307594673|ref|YP_003900990.1| - 0.09 13.4 0.1 0.26 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_L21e PF01157.18 gi|307594674|ref|YP_003900991.1| - 7.7e-31 105.9 0.7 8.7e-31 105.8 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e CSD2 PF17876.1 gi|307594674|ref|YP_003900991.1| - 0.035 14.3 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 Cold shock domain THUMP PF02926.17 gi|307594675|ref|YP_003900992.1| - 2.9e-10 40.4 0.1 9.1e-10 38.8 0.1 1.9 1 0 0 1 1 1 1 THUMP domain RNase_E_G PF10150.9 gi|307594675|ref|YP_003900992.1| - 0.037 13.4 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease E/G family ParD PF09386.10 gi|307594675|ref|YP_003900992.1| - 0.16 12.4 0.0 25 5.4 0.0 2.4 2 0 0 2 2 2 0 Antitoxin ParD LOH1CR12 PF10158.9 gi|307594676|ref|YP_003900993.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Tumour suppressor protein LAGLIDADG_3 PF14528.6 gi|307594676|ref|YP_003900993.1| - 0.22 11.9 0.4 0.51 10.7 0.0 1.7 2 1 1 3 3 3 0 LAGLIDADG-like domain dTDP_sugar_isom PF00908.17 gi|307594677|ref|YP_003900994.1| - 2e-68 229.3 0.0 2.2e-68 229.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase HTH_5 PF01022.20 gi|307594678|ref|YP_003900995.1| - 2.1e-08 33.9 0.0 3.9e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|307594678|ref|YP_003900995.1| - 6.5e-06 25.6 0.1 1.4e-05 24.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|307594678|ref|YP_003900995.1| - 0.00015 21.7 0.0 0.00051 20.0 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|307594678|ref|YP_003900995.1| - 0.00063 19.6 0.0 0.0019 18.1 0.0 1.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|307594678|ref|YP_003900995.1| - 0.00089 19.1 0.1 0.0046 16.8 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|307594678|ref|YP_003900995.1| - 0.0021 18.1 0.0 0.045 13.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|307594678|ref|YP_003900995.1| - 0.0036 17.2 1.1 0.011 15.7 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|307594678|ref|YP_003900995.1| - 0.018 15.1 0.0 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.13 gi|307594678|ref|YP_003900995.1| - 0.029 14.0 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_27 PF13463.6 gi|307594678|ref|YP_003900995.1| - 0.039 14.5 0.0 2.2 8.8 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|307594678|ref|YP_003900995.1| - 0.068 13.4 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GAGA PF09237.11 gi|307594678|ref|YP_003900995.1| - 0.12 12.2 0.2 0.97 9.3 0.0 2.2 2 0 0 2 2 2 0 GAGA factor UPF0179 PF03684.13 gi|307594678|ref|YP_003900995.1| - 0.12 12.2 0.6 0.66 9.9 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0179) DSHCT PF08148.12 gi|307594678|ref|YP_003900995.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 DSHCT (NUC185) domain Robl_LC7 PF03259.17 gi|307594679|ref|YP_003900996.1| - 5.5e-09 35.7 0.3 7.4e-09 35.3 0.3 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain UPF0047 PF01894.17 gi|307594680|ref|YP_003900997.1| - 7.9e-37 125.9 0.0 1e-36 125.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF296 PF03479.15 gi|307594680|ref|YP_003900997.1| - 0.15 12.4 0.0 0.22 11.9 0.0 1.2 1 0 0 1 1 1 0 Plants and Prokaryotes Conserved (PCC) domain DNase-RNase PF02577.14 gi|307594681|ref|YP_003900998.1| - 4.3e-31 107.2 0.4 5.5e-31 106.9 0.4 1.1 1 0 0 1 1 1 1 Bifunctional nuclease RuvB_N PF05496.12 gi|307594681|ref|YP_003900998.1| - 0.092 12.5 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain tRNA-synt_His PF13393.6 gi|307594682|ref|YP_003900999.1| - 1.3e-64 218.5 0.0 1.5e-64 218.2 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|307594682|ref|YP_003900999.1| - 5.5e-11 42.5 0.0 1.5e-10 41.1 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|307594682|ref|YP_003900999.1| - 9.8e-07 28.9 0.0 6.1e-06 26.3 0.0 2.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|307594682|ref|YP_003900999.1| - 0.0029 16.7 0.1 0.12 11.4 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|307594682|ref|YP_003900999.1| - 0.0057 16.2 0.0 0.021 14.3 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) WIYLD PF10440.9 gi|307594682|ref|YP_003900999.1| - 0.042 13.7 0.0 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-binding WIYLD domain TetR_C_1 PF02909.17 gi|307594682|ref|YP_003900999.1| - 0.15 11.9 0.0 14 5.5 0.0 2.4 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Peptidase_A24 PF01478.18 gi|307594683|ref|YP_003901000.1| - 1.1e-09 38.6 10.0 1.1e-09 38.6 10.0 1.9 3 0 0 3 3 3 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|307594683|ref|YP_003901000.1| - 4.2e-05 24.0 0.1 0.00011 22.6 0.1 1.8 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Thiolase_N PF00108.23 gi|307594684|ref|YP_003901001.1| - 0.0018 17.7 0.1 0.0043 16.4 0.1 1.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|307594684|ref|YP_003901001.1| - 0.027 14.1 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|307594685|ref|YP_003901002.1| - 1.9e-10 40.5 0.1 3.8e-09 36.3 0.1 2.2 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|307594685|ref|YP_003901002.1| - 9.6e-07 28.5 0.1 0.0032 17.1 0.0 2.6 3 0 0 3 3 3 2 Thiolase, C-terminal domain Peptidase_M22 PF00814.25 gi|307594685|ref|YP_003901002.1| - 0.074 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Glycoprotease family ACP_syn_III PF08545.10 gi|307594685|ref|YP_003901002.1| - 0.24 11.3 1.5 16 5.4 0.0 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PTE PF02126.18 gi|307594686|ref|YP_003901003.1| - 0.014 14.8 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 Phosphotriesterase family MFS_1 PF07690.16 gi|307594687|ref|YP_003901004.1| - 5.3e-29 101.3 86.0 1e-24 87.2 52.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307594687|ref|YP_003901004.1| - 4.6e-25 88.4 44.0 6.7e-16 58.2 13.6 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter Amdase PF17645.1 gi|307594688|ref|YP_003901005.1| - 4.8e-32 111.4 0.0 6.3e-32 111.0 0.0 1.0 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|307594688|ref|YP_003901005.1| - 6e-17 62.2 0.0 7.1e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Lactamase_B PF00753.27 gi|307594689|ref|YP_003901006.1| - 2.8e-20 73.2 0.1 4.3e-20 72.6 0.1 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|307594689|ref|YP_003901006.1| - 0.00068 19.2 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|307594689|ref|YP_003901006.1| - 0.0058 16.5 0.0 0.0089 15.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|307594689|ref|YP_003901006.1| - 0.091 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Hydantoinase_A PF01968.18 gi|307594690|ref|YP_003901007.1| - 1.1e-97 326.8 4.6 2e-97 325.9 0.3 2.2 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|307594690|ref|YP_003901007.1| - 7.2e-48 162.6 0.0 1.5e-47 161.6 0.0 1.6 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|307594690|ref|YP_003901007.1| - 0.00023 20.8 0.1 0.32 10.4 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.6 gi|307594690|ref|YP_003901007.1| - 0.003 16.2 0.9 0.15 10.7 0.2 2.7 2 1 1 3 3 3 2 MutL protein NTP_transf_5 PF14907.6 gi|307594691|ref|YP_003901008.1| - 2.3e-05 24.1 0.1 3.4e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase TENA_THI-4 PF03070.16 gi|307594692|ref|YP_003901009.1| - 9.9e-27 94.1 0.1 1.2e-26 93.9 0.1 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Ehrlichia_rpt PF09528.10 gi|307594694|ref|YP_003901011.1| - 0.00026 20.4 0.4 0.14 11.7 0.1 2.8 1 1 1 2 2 2 2 Ehrlichia tandem repeat (Ehrlichia_rpt) Pox_A_type_inc PF04508.12 gi|307594694|ref|YP_003901011.1| - 0.0011 18.7 0.9 0.0011 18.7 0.9 2.3 3 0 0 3 3 3 1 Viral A-type inclusion protein repeat ScsC_N PF18312.1 gi|307594694|ref|YP_003901011.1| - 0.006 16.4 5.4 0.014 15.2 0.7 3.1 2 1 1 3 3 3 1 Copper resistance protein ScsC N-terminal domain XPC-binding PF09280.11 gi|307594694|ref|YP_003901011.1| - 0.032 14.0 0.3 0.032 14.0 0.3 1.9 2 0 0 2 2 2 0 XPC-binding domain Fes1 PF08609.10 gi|307594694|ref|YP_003901011.1| - 0.093 13.6 0.2 0.29 12.0 0.1 1.7 2 0 0 2 2 2 0 Nucleotide exchange factor Fes1 HSBP1 PF06825.12 gi|307594694|ref|YP_003901011.1| - 0.42 10.5 3.2 0.76 9.7 1.0 2.2 1 1 1 2 2 2 0 Heat shock factor binding protein 1 Thermopsin PF05317.11 gi|307594695|ref|YP_003901012.1| - 5e-33 114.7 4.4 6.5e-31 107.7 4.4 2.2 1 1 0 1 1 1 1 Thermopsin DUF1899 PF08953.11 gi|307594696|ref|YP_003901013.1| - 0.041 13.8 1.1 0.13 12.1 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1899) Caveolin PF01146.17 gi|307594696|ref|YP_003901013.1| - 0.2 11.6 2.2 0.59 10.1 1.6 1.9 1 1 1 2 2 2 0 Caveolin CAP_N PF01213.19 gi|307594697|ref|YP_003901014.1| - 0.31 10.5 1.9 0.53 9.7 1.9 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal LPD16 PF18830.1 gi|307594698|ref|YP_003901015.1| - 0.0025 17.7 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 Large polyvalent protein-associated domain 16 Cytochrom_B562 PF07361.11 gi|307594700|ref|YP_003901017.1| - 0.017 15.8 1.3 1.1 9.9 0.1 2.6 2 0 0 2 2 2 0 Cytochrome b562 Spore_III_AB PF09548.10 gi|307594700|ref|YP_003901017.1| - 0.065 13.3 0.5 0.21 11.7 0.5 1.9 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) SPOR PF05036.13 gi|307594700|ref|YP_003901017.1| - 0.077 13.4 0.3 1.4 9.3 0.1 2.5 2 0 0 2 2 2 0 Sporulation related domain Vac_Fusion PF02346.16 gi|307594700|ref|YP_003901017.1| - 0.093 12.4 1.9 1.7 8.3 0.1 3.0 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 LAGLIDADG_2 PF03161.13 gi|307594700|ref|YP_003901017.1| - 0.11 12.5 2.3 0.94 9.5 0.1 2.9 3 0 0 3 3 3 0 LAGLIDADG DNA endonuclease family LAGLIDADG_WhiA PF14527.6 gi|307594700|ref|YP_003901017.1| - 0.13 12.4 3.3 0.19 11.8 0.2 3.0 3 1 0 3 3 3 0 WhiA LAGLIDADG-like domain Adeno_E3_CR2 PF02439.15 gi|307594701|ref|YP_003901018.1| - 0.01 15.5 0.1 0.022 14.5 0.1 1.5 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 PaREP1 PF05942.11 gi|307594703|ref|YP_003901020.1| - 1.8e-23 82.6 1.7 1.8e-23 82.6 1.7 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family PIN_10 PF18478.1 gi|307594703|ref|YP_003901020.1| - 0.077 13.2 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 PIN like domain SOR_SNZ PF01680.17 gi|307594704|ref|YP_003901021.1| - 4.3e-94 314.1 0.8 4.3e-94 314.1 0.8 1.3 2 0 0 2 2 2 1 SOR/SNZ family ThiG PF05690.14 gi|307594704|ref|YP_003901021.1| - 6.8e-06 25.6 0.2 6.8e-06 25.6 0.2 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|307594704|ref|YP_003901021.1| - 0.0009 18.4 1.9 0.37 9.8 0.0 3.2 3 0 0 3 3 3 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|307594704|ref|YP_003901021.1| - 0.0018 17.8 1.1 0.14 11.6 0.3 3.0 2 1 0 2 2 2 1 Histidine biosynthesis protein IGPS PF00218.21 gi|307594704|ref|YP_003901021.1| - 0.0052 16.0 0.0 0.13 11.4 0.0 2.4 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase TetR_C_27 PF17935.1 gi|307594704|ref|YP_003901021.1| - 0.028 14.5 0.0 0.056 13.5 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain OMPdecase PF00215.24 gi|307594704|ref|YP_003901021.1| - 0.043 13.4 0.2 0.34 10.5 0.0 2.3 2 1 0 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|307594704|ref|YP_003901021.1| - 0.063 12.5 0.8 0.33 10.1 0.0 2.3 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|307594704|ref|YP_003901021.1| - 0.08 12.3 0.2 0.08 12.3 0.2 1.7 2 0 0 2 2 2 0 Nitronate monooxygenase SNO PF01174.19 gi|307594705|ref|YP_003901022.1| - 4.7e-52 176.6 0.0 5.6e-52 176.3 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.28 gi|307594705|ref|YP_003901022.1| - 7.6e-08 32.4 0.0 7.3e-07 29.1 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|307594705|ref|YP_003901022.1| - 4.4e-07 29.7 0.0 6.7e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|307594705|ref|YP_003901022.1| - 9.7e-07 28.6 0.0 1.4e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 BPL_N PF09825.9 gi|307594705|ref|YP_003901022.1| - 0.061 12.4 0.0 0.38 9.8 0.0 1.9 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal PurS PF02700.14 gi|307594706|ref|YP_003901023.1| - 2.1e-13 50.2 0.0 2.6e-13 49.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 gi|307594707|ref|YP_003901024.1| - 2.2e-37 128.6 0.0 1.3e-36 126.0 0.0 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|307594707|ref|YP_003901024.1| - 1.4e-07 31.4 0.0 2.3e-07 30.8 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|307594707|ref|YP_003901024.1| - 5.7e-07 29.5 0.0 9.2e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|307594707|ref|YP_003901024.1| - 2.3e-06 27.4 0.0 4.7e-06 26.3 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|307594707|ref|YP_003901024.1| - 0.024 14.4 0.1 0.036 13.8 0.1 1.2 1 0 0 1 1 1 0 Peptidase C26 ATP-grasp PF02222.22 gi|307594708|ref|YP_003901025.1| - 2.1e-42 144.6 0.0 3.2e-42 144.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|307594708|ref|YP_003901025.1| - 3.1e-10 39.9 0.0 6.7e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|307594708|ref|YP_003901025.1| - 5.3e-09 35.9 0.0 1.1e-08 34.9 0.0 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain LAL_C2 PF18603.1 gi|307594708|ref|YP_003901025.1| - 1.9e-06 27.9 1.4 5e-05 23.4 0.3 3.3 3 1 0 3 3 3 1 L-amino acid ligase C-terminal domain 2 Pyr_redox PF00070.27 gi|307594708|ref|YP_003901025.1| - 0.00079 19.9 0.7 0.52 10.9 0.1 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase ATP-grasp_3 PF02655.14 gi|307594708|ref|YP_003901025.1| - 0.0011 19.0 0.0 0.0037 17.3 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 gi|307594708|ref|YP_003901025.1| - 0.0024 17.3 0.0 0.0045 16.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PurK_C PF17769.1 gi|307594708|ref|YP_003901025.1| - 0.0085 15.8 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Epimerase PF01370.21 gi|307594708|ref|YP_003901025.1| - 0.0089 15.5 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Pyr_redox_2 PF07992.14 gi|307594708|ref|YP_003901025.1| - 0.031 13.5 0.1 0.11 11.7 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.17 gi|307594708|ref|YP_003901025.1| - 0.093 11.8 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain 3HCDH_N PF02737.18 gi|307594708|ref|YP_003901025.1| - 0.15 11.9 0.2 0.24 11.3 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|307594708|ref|YP_003901025.1| - 0.16 12.2 0.1 0.25 11.5 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ATPgrasp_YheCD PF14398.6 gi|307594708|ref|YP_003901025.1| - 0.21 10.8 0.0 3.5 6.8 0.0 2.1 2 0 0 2 2 2 0 YheC/D like ATP-grasp Sugar_tr PF00083.24 gi|307594709|ref|YP_003901026.1| - 2.4e-42 145.4 26.5 3e-42 145.0 26.5 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|307594709|ref|YP_003901026.1| - 4e-18 65.5 54.4 3.2e-12 46.0 15.0 3.3 2 1 1 3 3 3 3 Major Facilitator Superfamily DUF1129 PF06570.11 gi|307594709|ref|YP_003901026.1| - 0.00023 20.7 1.6 0.00023 20.7 1.6 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1129) B9-C2 PF07162.11 gi|307594709|ref|YP_003901026.1| - 0.21 11.8 0.0 0.36 11.0 0.0 1.2 1 0 0 1 1 1 0 Ciliary basal body-associated, B9 protein GARS_A PF01071.19 gi|307594710|ref|YP_003901027.1| - 1.3e-41 142.5 0.0 1.9e-41 142.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|307594710|ref|YP_003901027.1| - 7.2e-18 65.2 0.1 1.6e-17 64.0 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|307594710|ref|YP_003901027.1| - 1.4e-09 38.1 0.0 3e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_ST PF14397.6 gi|307594710|ref|YP_003901027.1| - 6.5e-05 22.3 0.0 0.00025 20.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|307594710|ref|YP_003901027.1| - 0.00035 20.7 0.0 0.0017 18.4 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|307594710|ref|YP_003901027.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 gi|307594710|ref|YP_003901027.1| - 0.015 14.9 0.2 0.046 13.3 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp domain SAICAR_synt PF01259.18 gi|307594711|ref|YP_003901028.1| - 5.3e-54 183.5 0.0 6.5e-54 183.2 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase AIRS_C PF02769.22 gi|307594712|ref|YP_003901029.1| - 8.4e-20 71.5 0.2 3.5e-19 69.5 0.0 1.9 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|307594712|ref|YP_003901029.1| - 1.1e-14 54.8 0.9 3.3e-14 53.3 0.7 1.8 1 1 1 2 2 2 1 AIR synthase related protein, N-terminal domain Pribosyltran PF00156.27 gi|307594713|ref|YP_003901030.1| - 5.8e-09 35.6 0.3 9.5e-09 35.0 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|307594713|ref|YP_003901030.1| - 0.04 13.4 0.0 0.15 11.6 0.0 1.7 1 1 0 1 1 1 0 Phosphoribosyl transferase GATase_7 PF13537.6 gi|307594714|ref|YP_003901031.1| - 1.1e-15 57.6 0.0 2.6e-15 56.4 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|307594714|ref|YP_003901031.1| - 6e-13 49.2 0.0 1.1e-12 48.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|307594714|ref|YP_003901031.1| - 0.00011 21.8 0.1 0.00023 20.7 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain AIRS_C PF02769.22 gi|307594715|ref|YP_003901032.1| - 2.2e-46 157.8 1.6 9.9e-29 100.5 0.9 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|307594715|ref|YP_003901032.1| - 6.2e-42 142.2 0.4 1.3e-20 73.8 0.0 2.6 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|307594715|ref|YP_003901032.1| - 4.7e-09 36.6 0.1 9.6e-09 35.7 0.1 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain DRMBL PF07522.14 gi|307594715|ref|YP_003901032.1| - 0.2 11.9 0.0 0.66 10.2 0.0 1.7 2 0 0 2 2 2 0 DNA repair metallo-beta-lactamase AIRC PF00731.20 gi|307594716|ref|YP_003901033.1| - 2.3e-65 218.7 0.2 2.6e-65 218.5 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.22 gi|307594717|ref|YP_003901034.1| - 4.3e-52 176.2 0.0 6.1e-52 175.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|307594717|ref|YP_003901034.1| - 7.4e-18 64.0 0.0 2.5e-17 62.3 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|307594717|ref|YP_003901034.1| - 3.5e-05 23.4 0.0 8.3e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|307594717|ref|YP_003901034.1| - 0.00022 20.8 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|307594717|ref|YP_003901034.1| - 0.00026 21.1 0.0 0.00047 20.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 gi|307594717|ref|YP_003901034.1| - 0.002 17.5 0.0 0.0035 16.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|307594717|ref|YP_003901034.1| - 0.045 13.9 0.0 0.11 12.6 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase QueC PF06508.13 gi|307594719|ref|YP_003901036.1| - 2.3e-56 190.6 0.0 3.1e-56 190.2 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.6 gi|307594719|ref|YP_003901036.1| - 1.9e-15 56.9 0.0 3.7e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|307594719|ref|YP_003901036.1| - 1.6e-10 41.3 0.0 3.1e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.14 gi|307594719|ref|YP_003901036.1| - 5e-07 29.5 0.0 1.9e-06 27.6 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|307594719|ref|YP_003901036.1| - 2.5e-05 23.3 0.0 0.0001 21.2 0.0 2.0 1 1 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|307594719|ref|YP_003901036.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 PP-loop family DUF1059 PF06348.11 gi|307594719|ref|YP_003901036.1| - 0.058 13.6 0.7 0.12 12.6 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1059) Asn_synthase PF00733.21 gi|307594719|ref|YP_003901036.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Radical_SAM PF04055.21 gi|307594720|ref|YP_003901037.1| - 9e-13 48.9 0.0 1.2e-12 48.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|307594720|ref|YP_003901037.1| - 1.9e-12 47.4 0.0 2.8e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|307594720|ref|YP_003901037.1| - 1e-07 32.3 0.0 1.4e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain ApbA_C PF08546.11 gi|307594721|ref|YP_003901038.1| - 1.8e-37 128.3 0.1 3.4e-37 127.4 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|307594721|ref|YP_003901038.1| - 1.3e-10 41.1 3.0 4e-10 39.6 0.9 2.5 2 2 1 3 3 3 1 Ketopantoate reductase PanE/ApbA DBI_PRT PF02277.17 gi|307594722|ref|YP_003901039.1| - 6.4e-10 38.8 4.2 9e-10 38.3 4.2 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase Pantoate_transf PF02548.15 gi|307594723|ref|YP_003901040.1| - 2.9e-110 367.7 1.3 3.4e-110 367.5 1.3 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|307594723|ref|YP_003901040.1| - 6.7e-09 35.5 1.3 2.7e-08 33.6 1.3 2.0 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase HEPN_AbiV PF18728.1 gi|307594723|ref|YP_003901040.1| - 0.2 11.8 0.1 1.5 9.0 0.0 2.0 2 0 0 2 2 2 0 AbiV PPS_PS PF02006.16 gi|307594724|ref|YP_003901041.1| - 7.4e-78 260.1 2.3 8.9e-78 259.9 2.3 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase GHMP_kinases_N PF00288.26 gi|307594725|ref|YP_003901042.1| - 8.7e-07 29.1 1.4 1.4e-06 28.4 1.4 1.3 1 0 0 1 1 1 1 GHMP kinases N terminal domain Tir_receptor_C PF07489.11 gi|307594725|ref|YP_003901042.1| - 0.011 15.7 0.2 0.019 15.0 0.2 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus PUB PF09409.10 gi|307594725|ref|YP_003901042.1| - 0.1 12.5 0.0 0.42 10.6 0.0 1.8 1 1 0 1 1 1 0 PUB domain Histidinol_dh PF00815.20 gi|307594726|ref|YP_003901043.1| - 2.2e-111 372.8 0.4 5.7e-110 368.1 0.4 2.0 1 1 0 1 1 1 1 Histidinol dehydrogenase DUF1837 PF08878.11 gi|307594726|ref|YP_003901043.1| - 0.0033 17.2 0.0 0.0057 16.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1837) GATase PF00117.28 gi|307594727|ref|YP_003901044.1| - 7.6e-18 65.0 0.0 1e-17 64.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|307594727|ref|YP_003901044.1| - 0.0002 21.2 0.0 0.06 13.1 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.14 gi|307594727|ref|YP_003901044.1| - 0.0084 15.7 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|307594727|ref|YP_003901044.1| - 0.0085 16.0 0.0 0.11 12.4 0.0 2.1 2 0 0 2 2 2 1 SNO glutamine amidotransferase family PRA-PH PF01503.17 gi|307594728|ref|YP_003901045.1| - 8.7e-19 67.8 0.0 9.9e-19 67.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|307594728|ref|YP_003901045.1| - 6.8e-06 26.2 0.2 1.2e-05 25.4 0.2 1.4 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-CH PF01502.18 gi|307594729|ref|YP_003901046.1| - 1.2e-30 105.1 0.2 1.8e-30 104.6 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase His_biosynth PF00977.21 gi|307594730|ref|YP_003901047.1| - 8.6e-80 267.5 1.5 9.7e-80 267.3 1.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|307594730|ref|YP_003901047.1| - 9.6e-08 31.5 0.1 0.00015 21.0 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|307594730|ref|YP_003901047.1| - 2.7e-07 30.3 5.3 0.002 17.6 0.3 2.1 1 1 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|307594730|ref|YP_003901047.1| - 7.1e-06 25.5 1.2 0.0062 15.9 0.2 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|307594730|ref|YP_003901047.1| - 3.2e-05 23.4 0.2 0.17 11.2 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|307594730|ref|YP_003901047.1| - 0.00027 20.3 0.1 0.0054 16.0 0.0 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|307594730|ref|YP_003901047.1| - 0.00094 18.6 0.2 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator PcrB PF01884.17 gi|307594730|ref|YP_003901047.1| - 0.001 18.6 0.9 0.17 11.3 0.1 2.2 2 0 0 2 2 2 2 PcrB family Trp_syntA PF00290.20 gi|307594730|ref|YP_003901047.1| - 0.06 12.2 1.1 0.47 9.3 0.1 2.0 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DUF1241 PF06840.11 gi|307594730|ref|YP_003901047.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) IGPD PF00475.18 gi|307594731|ref|YP_003901048.1| - 4.3e-45 153.5 0.1 5.3e-45 153.3 0.1 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|307594732|ref|YP_003901049.1| - 1.1e-41 142.8 0.7 1.3e-41 142.6 0.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|307594732|ref|YP_003901049.1| - 0.00028 20.4 0.5 0.022 14.2 0.0 2.1 2 0 0 2 2 2 2 PcrB family Dus PF01207.17 gi|307594732|ref|YP_003901049.1| - 0.012 14.8 0.0 0.057 12.5 0.0 1.8 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) Trp_syntA PF00290.20 gi|307594732|ref|YP_003901049.1| - 0.016 14.0 0.2 2 7.2 0.0 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain HisG PF01634.18 gi|307594733|ref|YP_003901050.1| - 7.7e-43 146.2 0.1 1e-42 145.9 0.1 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|307594733|ref|YP_003901050.1| - 2.9e-20 72.2 1.5 7.3e-20 70.9 0.5 2.2 2 0 0 2 2 2 1 HisG, C-terminal domain Aminotran_1_2 PF00155.21 gi|307594734|ref|YP_003901051.1| - 3.9e-49 167.8 0.0 4.7e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|307594734|ref|YP_003901051.1| - 0.0091 14.9 0.0 0.012 14.6 0.0 1.1 1 0 0 1 1 1 1 Allinase DUF4127 PF13552.6 gi|307594734|ref|YP_003901051.1| - 0.14 10.8 0.0 0.17 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) MFS_1 PF07690.16 gi|307594735|ref|YP_003901052.1| - 1e-20 74.0 51.1 1e-20 74.0 51.1 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307594735|ref|YP_003901052.1| - 6.9e-17 61.4 34.2 5.8e-16 58.4 15.5 2.7 1 1 1 2 2 2 2 Sugar (and other) transporter PALP PF00291.25 gi|307594736|ref|YP_003901053.1| - 8e-70 235.6 2.2 9.3e-70 235.3 2.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme OrfB_Zn_ribbon PF07282.11 gi|307594736|ref|YP_003901053.1| - 0.0096 15.8 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|307594736|ref|YP_003901053.1| - 0.026 13.9 0.5 1.5 8.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|307594736|ref|YP_003901053.1| - 0.027 14.0 0.4 0.049 13.2 0.4 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|307594736|ref|YP_003901053.1| - 0.05 13.3 1.2 0.12 12.1 1.2 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|307594736|ref|YP_003901053.1| - 0.074 13.1 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|307594736|ref|YP_003901053.1| - 0.09 12.9 0.6 0.17 12.0 0.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|307594736|ref|YP_003901053.1| - 0.2 11.7 0.4 0.35 10.9 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|307594736|ref|YP_003901053.1| - 0.44 10.3 4.8 2.3 8.1 4.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-ACC PF17848.1 gi|307594736|ref|YP_003901053.1| - 0.51 10.5 1.5 15 5.7 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn_Tnp_IS1595 PF12760.7 gi|307594736|ref|YP_003901053.1| - 0.58 10.2 1.9 15 5.6 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Mu-like_Com PF10122.9 gi|307594736|ref|YP_003901053.1| - 2.8 7.5 8.3 11 5.5 0.8 2.5 1 1 1 2 2 2 0 Mu-like prophage protein Com Homoserine_dh PF00742.19 gi|307594737|ref|YP_003901054.1| - 1.1e-44 152.4 0.0 1.5e-44 151.9 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|307594737|ref|YP_003901054.1| - 6.5e-07 30.0 0.0 2.1e-06 28.4 0.0 1.9 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|307594737|ref|YP_003901054.1| - 0.048 13.9 0.0 0.17 12.2 0.0 1.9 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|307594737|ref|YP_003901054.1| - 0.074 13.9 0.0 0.31 11.9 0.0 2.0 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|307594738|ref|YP_003901055.1| - 2.9e-28 98.7 0.0 4.2e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|307594738|ref|YP_003901055.1| - 9.5e-23 81.2 0.0 1.4e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 gi|307594738|ref|YP_003901055.1| - 0.015 14.8 0.0 0.021 14.3 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 gi|307594738|ref|YP_003901055.1| - 0.019 15.1 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|307594738|ref|YP_003901055.1| - 0.091 13.5 0.0 0.2 12.4 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase AA_kinase PF00696.28 gi|307594739|ref|YP_003901056.1| - 7.1e-35 120.7 0.0 8.8e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family HALZ PF02183.18 gi|307594740|ref|YP_003901057.1| - 3.4e-05 24.0 4.1 0.00023 21.3 2.2 2.2 1 1 1 2 2 2 1 Homeobox associated leucine zipper GAS PF13851.6 gi|307594740|ref|YP_003901057.1| - 0.0012 18.2 0.4 0.0017 17.7 0.4 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding SHE3 PF17078.5 gi|307594740|ref|YP_003901057.1| - 0.0038 17.0 2.7 0.0056 16.4 2.7 1.2 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 Sec34 PF04136.15 gi|307594740|ref|YP_003901057.1| - 0.013 15.3 1.5 0.021 14.7 1.5 1.2 1 0 0 1 1 1 0 Sec34-like family GIT_CC PF16559.5 gi|307594740|ref|YP_003901057.1| - 0.017 15.0 1.9 0.033 14.1 1.9 1.3 1 0 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor Prefoldin_2 PF01920.20 gi|307594740|ref|YP_003901057.1| - 0.018 15.0 0.5 0.059 13.3 0.1 1.6 1 1 0 1 1 1 0 Prefoldin subunit IFT57 PF10498.9 gi|307594740|ref|YP_003901057.1| - 0.026 13.5 2.2 0.036 13.0 2.2 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DivIC PF04977.15 gi|307594740|ref|YP_003901057.1| - 0.03 14.1 0.1 0.075 12.8 0.1 1.6 1 0 0 1 1 1 0 Septum formation initiator Spc7 PF08317.11 gi|307594740|ref|YP_003901057.1| - 0.03 13.2 0.1 0.04 12.8 0.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein JAKMIP_CC3 PF16034.5 gi|307594740|ref|YP_003901057.1| - 0.038 13.9 1.4 0.082 12.9 1.4 1.5 1 1 0 1 1 1 0 JAKMIP CC3 domain ZapB PF06005.12 gi|307594740|ref|YP_003901057.1| - 0.067 13.6 0.8 0.12 12.8 0.8 1.4 1 0 0 1 1 1 0 Cell division protein ZapB Dynactin_p22 PF07426.11 gi|307594740|ref|YP_003901057.1| - 0.071 13.0 3.2 0.12 12.3 3.2 1.3 1 0 0 1 1 1 0 Dynactin subunit p22 TMF_TATA_bd PF12325.8 gi|307594740|ref|YP_003901057.1| - 0.08 13.2 0.1 0.13 12.5 0.1 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Jnk-SapK_ap_N PF09744.9 gi|307594740|ref|YP_003901057.1| - 0.12 12.6 0.5 0.17 12.1 0.5 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF4407 PF14362.6 gi|307594740|ref|YP_003901057.1| - 0.24 10.7 0.3 0.43 9.9 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Cep57_MT_bd PF06657.13 gi|307594740|ref|YP_003901057.1| - 1 9.8 2.6 4.7 7.7 2.4 1.9 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DUF4389 PF14333.6 gi|307594741|ref|YP_003901058.1| - 0.025 14.5 2.3 0.026 14.4 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4389) Pribosyltran PF00156.27 gi|307594744|ref|YP_003901061.1| - 6.5e-23 81.0 0.1 8.7e-23 80.6 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|307594744|ref|YP_003901061.1| - 0.021 14.3 0.0 0.029 13.8 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase GMP_synt_C PF00958.22 gi|307594745|ref|YP_003901062.1| - 3.4e-21 75.1 0.4 1.6e-15 56.9 0.0 2.7 1 1 2 3 3 3 2 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|307594745|ref|YP_003901062.1| - 2.1e-11 43.4 0.0 4.8e-05 22.6 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.20 gi|307594745|ref|YP_003901062.1| - 9.7e-06 25.5 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|307594745|ref|YP_003901062.1| - 0.0013 18.3 0.0 0.17 11.4 0.0 2.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|307594745|ref|YP_003901062.1| - 0.0017 17.2 0.0 0.2 10.4 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.14 gi|307594745|ref|YP_003901062.1| - 0.0018 17.9 0.0 0.017 14.7 0.0 2.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) GATase PF00117.28 gi|307594746|ref|YP_003901063.1| - 3.5e-31 108.5 0.0 4.3e-31 108.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|307594746|ref|YP_003901063.1| - 2.3e-13 50.4 0.3 1e-11 45.0 0.4 2.7 1 1 1 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|307594746|ref|YP_003901063.1| - 0.0066 16.3 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family AA_permease_2 PF13520.6 gi|307594747|ref|YP_003901064.1| - 6.3e-17 61.5 68.5 7.9e-17 61.2 68.5 1.1 1 0 0 1 1 1 1 Amino acid permease TMEM100 PF16311.5 gi|307594747|ref|YP_003901064.1| - 9.7 5.8 6.2 25 4.4 2.8 3.0 2 1 1 3 3 3 0 Transmembrane protein 100 Amidohydro_1 PF01979.20 gi|307594748|ref|YP_003901065.1| - 5.4e-32 111.5 0.0 6.6e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|307594748|ref|YP_003901065.1| - 1e-06 28.5 0.1 0.006 16.1 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family TauE PF01925.19 gi|307594749|ref|YP_003901066.1| - 4.6e-42 144.3 32.2 4.6e-42 144.3 32.2 2.0 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE CLLAC PF15675.5 gi|307594749|ref|YP_003901066.1| - 0.11 12.0 5.4 1.4 8.5 0.4 3.3 2 0 0 2 2 2 0 CLLAC-motif containing domain DUF1634 PF07843.11 gi|307594750|ref|YP_003901067.1| - 3.3e-29 100.9 7.4 4.2e-29 100.6 7.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) Holin_SPP1 PF04688.13 gi|307594750|ref|YP_003901067.1| - 4.1 7.6 5.2 1.4 9.2 1.5 1.9 2 0 0 2 2 2 0 SPP1 phage holin EamA PF00892.20 gi|307594751|ref|YP_003901068.1| - 5.3e-20 72.0 44.2 2.6e-16 60.1 15.0 2.7 2 1 0 2 2 2 2 EamA-like transporter family PUNUT PF16913.5 gi|307594751|ref|YP_003901068.1| - 0.013 14.8 2.7 0.013 14.8 2.7 2.2 2 0 0 2 2 2 0 Purine nucleobase transmembrane transport DUF3272 PF11676.8 gi|307594751|ref|YP_003901068.1| - 0.32 11.3 5.2 3.2 8.1 0.2 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3272) MFS_1 PF07690.16 gi|307594752|ref|YP_003901069.1| - 6e-35 120.8 68.5 3.8e-28 98.4 43.2 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Thermopsin PF05317.11 gi|307594753|ref|YP_003901070.1| - 8.5e-75 251.6 2.3 8.5e-75 251.6 2.3 2.6 2 1 1 3 3 3 1 Thermopsin DUF996 PF06195.13 gi|307594754|ref|YP_003901071.1| - 5.3e-34 117.4 24.5 4.6e-33 114.4 18.5 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF996) DUF2975 PF11188.8 gi|307594754|ref|YP_003901071.1| - 0.15 12.0 17.0 0.38 10.6 10.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) DUF4818 PF16089.5 gi|307594754|ref|YP_003901071.1| - 0.71 10.3 5.2 7.1 7.1 0.1 2.6 2 2 0 2 2 2 0 Domain of unknown function (DUF4818) Cation_ATPase_C PF00689.21 gi|307594754|ref|YP_003901071.1| - 1.9 8.2 14.6 0.36 10.5 9.7 2.1 1 1 1 2 2 2 0 Cation transporting ATPase, C-terminus DUF2434 PF10361.9 gi|307594754|ref|YP_003901071.1| - 2.9 6.8 8.3 0.42 9.6 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2434) Fijivirus_P9-2 PF06837.11 gi|307594754|ref|YP_003901071.1| - 5.3 6.4 6.9 1.9 7.9 0.8 2.3 1 1 1 2 2 2 0 Fijivirus P9-2 protein DUF973 PF06157.11 gi|307594754|ref|YP_003901071.1| - 5.6 5.9 24.4 23 3.9 24.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF973) tRNA_int_endo PF01974.17 gi|307594755|ref|YP_003901072.1| - 4.3e-24 84.4 0.0 6.9e-24 83.7 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|307594755|ref|YP_003901072.1| - 2.8e-19 68.6 0.1 4.4e-19 67.9 0.1 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|307594755|ref|YP_003901072.1| - 0.068 13.4 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term Molydop_binding PF01568.21 gi|307594756|ref|YP_003901073.1| - 5.3e-05 23.2 1.1 0.024 14.6 0.2 2.1 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|307594756|ref|YP_003901073.1| - 0.00035 20.7 0.2 0.052 13.7 0.1 2.1 1 1 1 2 2 2 2 Cell division protein 48 (CDC48), N-terminal domain DUF498 PF04430.14 gi|307594756|ref|YP_003901073.1| - 0.12 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) TT_ORF1 PF02956.14 gi|307594756|ref|YP_003901073.1| - 0.2 10.3 1.7 0.24 10.0 1.7 1.1 1 0 0 1 1 1 0 TT viral orf 1 zf-B_box PF00643.24 gi|307594757|ref|YP_003901074.1| - 3.9e-05 23.7 24.0 0.0012 19.0 3.0 3.9 3 1 1 4 4 4 3 B-box zinc finger IBD PF10416.9 gi|307594757|ref|YP_003901074.1| - 0.031 14.3 0.3 0.045 13.8 0.3 1.1 1 0 0 1 1 1 0 Transcription-initiator DNA-binding domain IBD Prok-RING_2 PF14445.6 gi|307594757|ref|YP_003901074.1| - 0.035 14.3 9.4 0.035 14.3 9.4 2.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 zf-HIT PF04438.16 gi|307594757|ref|YP_003901074.1| - 0.07 13.0 4.0 0.07 13.0 4.0 3.4 3 1 0 3 3 3 0 HIT zinc finger FYVE PF01363.21 gi|307594757|ref|YP_003901074.1| - 0.81 9.9 31.5 7.7 6.7 15.1 3.7 1 1 1 2 2 2 0 FYVE zinc finger Transp_Tc5_C PF04236.15 gi|307594757|ref|YP_003901074.1| - 1.6 9.1 20.0 1.5 9.2 6.5 2.8 1 1 1 2 2 2 0 Tc5 transposase C-terminal domain C5HCH PF17982.1 gi|307594757|ref|YP_003901074.1| - 1.8 8.7 15.8 3 8.1 6.0 2.9 1 1 1 2 2 2 0 NSD Cys-His rich domain zf-C3HC4_3 PF13920.6 gi|307594757|ref|YP_003901074.1| - 2.5 8.1 26.5 3.5 7.6 9.0 2.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) CBS PF00571.28 gi|307594758|ref|YP_003901075.1| - 5.1e-30 103.7 1.8 4.6e-14 52.6 0.1 2.7 2 0 0 2 2 2 2 CBS domain HrcA_DNA-bdg PF03444.15 gi|307594758|ref|YP_003901075.1| - 1.1e-26 92.3 0.2 2.5e-26 91.1 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.12 gi|307594758|ref|YP_003901075.1| - 4.7e-10 39.3 0.0 2.2e-09 37.1 0.0 2.1 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|307594758|ref|YP_003901075.1| - 6.1e-10 39.3 0.3 1.6e-09 37.9 0.0 1.9 2 0 0 2 2 1 1 Transcriptional regulator TrmB PF01978.19 gi|307594758|ref|YP_003901075.1| - 5.4e-05 23.0 0.1 0.00029 20.7 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|307594758|ref|YP_003901075.1| - 6e-05 22.8 0.0 0.00023 20.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|307594758|ref|YP_003901075.1| - 0.00011 22.3 0.1 0.00029 21.0 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|307594758|ref|YP_003901075.1| - 0.00022 20.9 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_24 PF13412.6 gi|307594758|ref|YP_003901075.1| - 0.00038 19.9 0.5 0.0011 18.5 0.0 2.1 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|307594758|ref|YP_003901075.1| - 0.00043 20.6 0.1 0.0038 17.6 0.0 2.4 3 0 0 3 3 2 1 FaeA-like protein Sigma70_r4_2 PF08281.12 gi|307594758|ref|YP_003901075.1| - 0.0025 17.5 0.2 0.027 14.1 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 GntR PF00392.21 gi|307594758|ref|YP_003901075.1| - 0.0036 16.9 0.0 0.0099 15.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Phage_terminase PF10668.9 gi|307594758|ref|YP_003901075.1| - 0.0056 16.7 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Phage terminase small subunit HTH_27 PF13463.6 gi|307594758|ref|YP_003901075.1| - 0.009 16.5 0.0 0.02 15.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|307594758|ref|YP_003901075.1| - 0.011 15.6 0.0 0.033 14.0 0.0 1.9 1 1 0 1 1 1 0 IclR helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|307594758|ref|YP_003901075.1| - 0.025 14.6 0.0 0.069 13.2 0.0 1.8 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus PaaX PF07848.12 gi|307594758|ref|YP_003901075.1| - 0.033 14.4 0.0 0.16 12.2 0.0 2.1 2 0 0 2 2 2 0 PaaX-like protein MarR_2 PF12802.7 gi|307594758|ref|YP_003901075.1| - 0.035 14.0 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|307594758|ref|YP_003901075.1| - 0.079 13.0 0.0 0.28 11.3 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Rio2_N PF09202.11 gi|307594758|ref|YP_003901075.1| - 0.14 12.4 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Rio2, N-terminal PALP PF00291.25 gi|307594759|ref|YP_003901076.1| - 1.2e-23 83.9 4.1 4.5e-12 46.0 1.4 3.4 2 1 1 3 3 3 2 Pyridoxal-phosphate dependent enzyme TrmB PF01978.19 gi|307594759|ref|YP_003901076.1| - 0.0028 17.5 0.1 0.066 13.1 0.1 3.2 4 0 0 4 4 4 1 Sugar-specific transcriptional regulator TrmB DUF2934 PF11154.8 gi|307594759|ref|YP_003901076.1| - 0.1 12.3 0.0 7.9 6.3 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2934) DUF87 PF01935.17 gi|307594760|ref|YP_003901077.1| - 2.1e-37 129.4 0.1 3.7e-37 128.6 0.1 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|307594760|ref|YP_003901077.1| - 4e-06 26.0 0.0 0.00029 19.9 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 gi|307594760|ref|YP_003901077.1| - 4.2e-05 22.5 0.0 6.3e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer DUF853 PF05872.12 gi|307594760|ref|YP_003901077.1| - 9.9e-05 21.1 0.1 0.054 12.1 0.0 2.6 2 1 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|307594760|ref|YP_003901077.1| - 0.0002 20.8 0.0 0.14 11.5 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family ResIII PF04851.15 gi|307594760|ref|YP_003901077.1| - 0.00023 21.2 0.0 0.0027 17.7 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|307594760|ref|YP_003901077.1| - 0.0032 17.7 0.1 0.63 10.3 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.7 gi|307594760|ref|YP_003901077.1| - 0.0095 14.9 0.2 0.05 12.5 0.2 2.0 2 1 0 2 2 2 1 AAA-like domain AAA PF00004.29 gi|307594760|ref|YP_003901077.1| - 0.016 15.6 0.1 0.075 13.5 0.0 2.2 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|307594760|ref|YP_003901077.1| - 0.026 14.6 0.1 0.074 13.1 0.1 1.8 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DEAD PF00270.29 gi|307594760|ref|YP_003901077.1| - 0.045 13.5 0.0 0.22 11.3 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase DUF2782 PF11191.8 gi|307594760|ref|YP_003901077.1| - 0.086 13.1 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2782) Metallophos PF00149.28 gi|307594761|ref|YP_003901078.1| - 5.7e-11 43.3 0.6 1.2e-10 42.2 0.6 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|307594761|ref|YP_003901078.1| - 8.2e-10 39.1 0.0 1.7e-09 38.1 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Fucokinase PF07959.12 gi|307594761|ref|YP_003901078.1| - 0.29 10.0 0.0 0.4 9.6 0.0 1.1 1 0 0 1 1 1 0 L-fucokinase SMC_N PF02463.19 gi|307594762|ref|YP_003901079.1| - 2.8e-23 82.5 0.0 2e-22 79.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|307594762|ref|YP_003901079.1| - 1.6e-22 81.0 24.7 6.5e-22 79.0 2.5 4.7 2 2 1 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|307594762|ref|YP_003901079.1| - 2.9e-15 56.9 0.2 1.8e-09 37.8 0.0 3.2 4 1 0 4 4 3 2 AAA ATPase domain AAA_13 PF13166.6 gi|307594762|ref|YP_003901079.1| - 4.3e-15 55.4 11.1 1.9e-05 23.6 0.0 4.9 2 1 2 4 4 4 3 AAA domain Baculo_PEP_C PF04513.12 gi|307594762|ref|YP_003901079.1| - 2.5e-11 43.8 0.5 0.12 12.4 0.0 5.5 3 2 2 6 6 6 3 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_21 PF13304.6 gi|307594762|ref|YP_003901079.1| - 1.3e-10 41.6 9.0 7.9e-05 22.6 3.2 2.9 2 2 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Atg14 PF10186.9 gi|307594762|ref|YP_003901079.1| - 3.9e-08 32.8 25.6 0.0025 17.0 0.1 4.3 1 1 3 4 4 4 3 Vacuolar sorting 38 and autophagy-related subunit 14 ABC_tran PF00005.27 gi|307594762|ref|YP_003901079.1| - 4.9e-07 30.3 5.2 0.018 15.6 0.0 4.3 4 1 0 4 4 3 2 ABC transporter GAS PF13851.6 gi|307594762|ref|YP_003901079.1| - 5e-06 26.0 34.2 0.014 14.8 11.3 4.8 2 2 1 4 4 4 3 Growth-arrest specific micro-tubule binding BLOC1_2 PF10046.9 gi|307594762|ref|YP_003901079.1| - 5.7e-06 26.5 17.0 0.17 12.2 4.4 7.0 3 3 3 7 7 7 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|307594762|ref|YP_003901079.1| - 1.3e-05 24.3 42.6 0.0028 16.6 8.3 5.9 2 2 4 6 6 6 3 Spc7 kinetochore protein AAA_29 PF13555.6 gi|307594762|ref|YP_003901079.1| - 1.8e-05 24.4 0.0 3.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4407 PF14362.6 gi|307594762|ref|YP_003901079.1| - 4.5e-05 23.0 12.5 0.12 11.7 4.4 4.3 1 1 1 3 3 3 1 Domain of unknown function (DUF4407) Fez1 PF06818.15 gi|307594762|ref|YP_003901079.1| - 6e-05 23.6 41.0 0.058 13.8 14.3 4.5 1 1 3 4 4 4 1 Fez1 Rad50_zn_hook PF04423.14 gi|307594762|ref|YP_003901079.1| - 8.7e-05 22.3 7.1 0.0015 18.3 0.2 4.9 5 0 0 5 5 2 1 Rad50 zinc hook motif ABC_tran_CTD PF16326.5 gi|307594762|ref|YP_003901079.1| - 0.00041 20.6 49.8 3.9 7.8 0.6 9.1 3 3 6 9 9 9 0 ABC transporter C-terminal domain NPV_P10 PF05531.12 gi|307594762|ref|YP_003901079.1| - 0.00049 20.5 1.4 61 4.2 0.4 6.8 4 3 3 7 7 6 0 Nucleopolyhedrovirus P10 protein HOOK PF05622.12 gi|307594762|ref|YP_003901079.1| - 0.00093 17.5 19.9 0.00093 17.5 19.9 2.3 2 0 0 2 2 2 1 HOOK protein CENP-F_leu_zip PF10473.9 gi|307594762|ref|YP_003901079.1| - 0.001 19.1 60.6 0.0052 16.8 5.4 6.9 2 2 5 7 7 7 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MAD PF05557.13 gi|307594762|ref|YP_003901079.1| - 0.0011 17.4 25.5 0.0011 17.4 25.5 3.4 2 1 0 2 2 2 1 Mitotic checkpoint protein HemX PF04375.14 gi|307594762|ref|YP_003901079.1| - 0.0019 17.6 8.4 4.6 6.4 0.4 4.3 3 1 2 5 5 5 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF948 PF06103.11 gi|307594762|ref|YP_003901079.1| - 0.0021 18.3 4.1 31 4.9 0.1 7.0 6 3 2 8 8 6 0 Bacterial protein of unknown function (DUF948) ATG16 PF08614.11 gi|307594762|ref|YP_003901079.1| - 0.005 17.1 57.1 0.74 10.0 6.5 5.4 2 2 2 4 4 4 1 Autophagy protein 16 (ATG16) APG6_N PF17675.1 gi|307594762|ref|YP_003901079.1| - 0.0052 17.3 56.3 1.5 9.4 3.0 6.2 2 2 2 4 4 4 1 Apg6 coiled-coil region Nup54 PF13874.6 gi|307594762|ref|YP_003901079.1| - 0.0065 16.6 41.5 0.16 12.0 1.9 5.7 2 2 2 4 4 4 1 Nucleoporin complex subunit 54 DUF1664 PF07889.12 gi|307594762|ref|YP_003901079.1| - 0.0073 16.4 19.0 2.1 8.4 0.4 7.0 2 2 5 8 8 8 1 Protein of unknown function (DUF1664) YojJ PF10372.9 gi|307594762|ref|YP_003901079.1| - 0.0074 16.4 8.8 0.3 11.2 0.2 5.8 6 1 1 7 7 5 1 Bacterial membrane-spanning protein N-terminus Laminin_II PF06009.12 gi|307594762|ref|YP_003901079.1| - 0.0099 15.9 21.4 0.026 14.6 1.2 5.7 3 2 0 5 5 5 1 Laminin Domain II Snapin_Pallidin PF14712.6 gi|307594762|ref|YP_003901079.1| - 0.016 15.6 28.9 2 8.9 0.6 6.8 3 2 2 6 6 6 0 Snapin/Pallidin Exonuc_VII_L PF02601.15 gi|307594762|ref|YP_003901079.1| - 0.017 14.7 25.9 0.45 10.0 4.2 4.0 1 1 2 3 3 3 0 Exonuclease VII, large subunit SbcCD_C PF13558.6 gi|307594762|ref|YP_003901079.1| - 0.019 15.2 0.0 0.071 13.3 0.0 2.0 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF4795 PF16043.5 gi|307594762|ref|YP_003901079.1| - 0.019 14.6 18.4 2.7 7.5 11.9 3.9 2 2 0 3 3 3 0 Domain of unknown function (DUF4795) AAA_30 PF13604.6 gi|307594762|ref|YP_003901079.1| - 0.021 14.5 0.2 0.2 11.3 0.1 2.7 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|307594762|ref|YP_003901079.1| - 0.023 15.1 0.0 0.023 15.1 0.0 4.0 3 2 1 4 4 3 0 AAA ATPase domain IFT57 PF10498.9 gi|307594762|ref|YP_003901079.1| - 0.03 13.3 20.1 0.96 8.3 5.2 4.3 2 2 1 4 4 4 0 Intra-flagellar transport protein 57 Sec34 PF04136.15 gi|307594762|ref|YP_003901079.1| - 0.036 14.0 9.6 0.65 9.9 1.3 5.0 2 2 3 5 5 4 0 Sec34-like family NACHT PF05729.12 gi|307594762|ref|YP_003901079.1| - 0.046 13.6 0.3 0.74 9.7 0.0 2.9 3 0 0 3 3 2 0 NACHT domain AAA PF00004.29 gi|307594762|ref|YP_003901079.1| - 0.053 14.0 0.0 0.29 11.6 0.0 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HMMR_N PF15905.5 gi|307594762|ref|YP_003901079.1| - 0.053 13.0 31.4 0.13 11.7 12.3 4.2 2 2 2 4 4 4 0 Hyaluronan mediated motility receptor N-terminal Seryl_tRNA_N PF02403.22 gi|307594762|ref|YP_003901079.1| - 0.06 13.6 38.1 1 9.6 0.8 6.6 3 2 4 8 8 7 0 Seryl-tRNA synthetase N-terminal domain HIP1_clath_bdg PF16515.5 gi|307594762|ref|YP_003901079.1| - 0.085 13.5 39.4 0.99 10.1 4.6 6.8 2 2 2 6 6 5 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Phage_GP20 PF06810.11 gi|307594762|ref|YP_003901079.1| - 0.096 12.5 6.4 11 5.9 1.2 4.8 3 2 1 5 5 4 0 Phage minor structural protein GP20 DHR10 PF18595.1 gi|307594762|ref|YP_003901079.1| - 0.12 12.5 57.7 0.035 14.2 13.2 6.0 2 2 3 6 6 6 0 Designed helical repeat protein 10 domain MscS_porin PF12795.7 gi|307594762|ref|YP_003901079.1| - 0.13 11.8 32.1 0.23 10.9 0.5 5.2 2 2 3 5 5 5 0 Mechanosensitive ion channel porin domain FapA PF03961.13 gi|307594762|ref|YP_003901079.1| - 0.14 10.7 25.3 1.2 7.7 2.2 4.3 1 1 1 4 4 4 0 Flagellar Assembly Protein A bZIP_1 PF00170.21 gi|307594762|ref|YP_003901079.1| - 0.16 12.0 0.0 0.16 12.0 0.0 7.6 7 3 0 7 7 6 0 bZIP transcription factor DUF2730 PF10805.8 gi|307594762|ref|YP_003901079.1| - 0.29 11.2 25.9 4.5 7.4 3.0 7.1 3 2 4 7 7 7 0 Protein of unknown function (DUF2730) Fzo_mitofusin PF04799.13 gi|307594762|ref|YP_003901079.1| - 0.35 10.4 23.7 3.5 7.2 0.2 6.5 2 2 4 6 6 6 0 fzo-like conserved region FlxA PF14282.6 gi|307594762|ref|YP_003901079.1| - 0.4 10.7 0.9 29 4.7 0.2 3.1 2 0 0 2 2 2 0 FlxA-like protein HAUS-augmin3 PF14932.6 gi|307594762|ref|YP_003901079.1| - 0.45 10.1 23.7 3.8 7.0 8.1 4.7 2 2 3 5 5 5 0 HAUS augmin-like complex subunit 3 AAA_27 PF13514.6 gi|307594762|ref|YP_003901079.1| - 0.52 9.9 13.5 0.029 14.0 2.0 4.5 3 3 1 4 4 2 0 AAA domain Fib_alpha PF08702.10 gi|307594762|ref|YP_003901079.1| - 0.53 10.5 10.6 5.1 7.3 0.8 4.6 2 2 5 7 7 6 0 Fibrinogen alpha/beta chain family Surfac_D-trimer PF09006.11 gi|307594762|ref|YP_003901079.1| - 0.66 9.9 8.7 11 6.0 0.0 5.7 6 1 1 7 7 4 0 Lung surfactant protein D coiled-coil trimerisation LMBR1 PF04791.16 gi|307594762|ref|YP_003901079.1| - 0.98 8.3 6.3 0.15 10.9 2.2 1.6 2 0 0 2 2 2 0 LMBR1-like membrane protein Sec8_exocyst PF04048.14 gi|307594762|ref|YP_003901079.1| - 1 9.2 6.0 23 4.9 0.0 4.6 3 1 3 6 6 6 0 Sec8 exocyst complex component specific domain TMF_TATA_bd PF12325.8 gi|307594762|ref|YP_003901079.1| - 1.1 9.5 59.8 0.54 10.5 2.6 7.3 2 2 5 7 7 7 0 TATA element modulatory factor 1 TATA binding Prefoldin_2 PF01920.20 gi|307594762|ref|YP_003901079.1| - 1.2 9.1 29.0 17 5.4 2.1 8.1 5 3 2 7 7 7 0 Prefoldin subunit BRE1 PF08647.11 gi|307594762|ref|YP_003901079.1| - 1.5 9.0 20.3 13 5.9 8.5 5.6 3 2 1 6 6 5 0 BRE1 E3 ubiquitin ligase DUF724 PF05266.14 gi|307594762|ref|YP_003901079.1| - 1.5 8.6 28.7 0.54 10.1 5.4 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF724) FlaC_arch PF05377.11 gi|307594762|ref|YP_003901079.1| - 1.5 9.3 40.4 14 6.2 0.9 9.7 3 3 4 7 7 7 0 Flagella accessory protein C (FlaC) DUF812 PF05667.11 gi|307594762|ref|YP_003901079.1| - 2.2 7.1 32.2 0.74 8.6 21.3 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF812) DUF641 PF04859.12 gi|307594762|ref|YP_003901079.1| - 2.2 8.6 28.6 1.8 8.9 0.0 5.5 4 2 2 6 6 6 0 Plant protein of unknown function (DUF641) CdvA PF18822.1 gi|307594762|ref|YP_003901079.1| - 2.3 8.1 37.0 0.09 12.6 8.7 6.8 4 3 1 5 5 5 0 CdvA-like coiled-coil domain V_ATPase_I PF01496.19 gi|307594762|ref|YP_003901079.1| - 2.5 5.9 14.1 13 3.5 0.0 3.5 2 2 2 4 4 4 0 V-type ATPase 116kDa subunit family Phage_GPO PF05929.11 gi|307594762|ref|YP_003901079.1| - 2.6 7.6 5.2 29 4.1 2.0 2.8 2 1 1 3 3 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Occludin_ELL PF07303.13 gi|307594762|ref|YP_003901079.1| - 2.6 8.8 13.7 14 6.5 2.1 5.4 2 2 4 6 6 5 0 Occludin homology domain OmpH PF03938.14 gi|307594762|ref|YP_003901079.1| - 2.8 8.3 17.2 3.2 8.1 5.7 4.4 2 1 3 5 5 5 0 Outer membrane protein (OmpH-like) AAA_11 PF13086.6 gi|307594762|ref|YP_003901079.1| - 4.1 7.1 0.0 4.1 7.1 0.0 3.9 2 1 1 3 3 2 0 AAA domain Mt_ATP-synt_B PF05405.14 gi|307594762|ref|YP_003901079.1| - 5.1 6.7 7.8 1.8 8.2 3.9 2.2 2 0 0 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) AAA_22 PF13401.6 gi|307594762|ref|YP_003901079.1| - 5.4 7.3 10.8 2.9 8.2 0.0 4.4 4 1 1 5 5 4 0 AAA domain Rootletin PF15035.6 gi|307594762|ref|YP_003901079.1| - 7.4 6.6 42.7 2.4 8.2 1.1 4.8 3 2 2 5 5 4 0 Ciliary rootlet component, centrosome cohesion DUF4140 PF13600.6 gi|307594762|ref|YP_003901079.1| - 8.2 6.9 43.9 40 4.7 0.7 9.1 1 1 3 4 4 2 0 N-terminal domain of unknown function (DUF4140) DUF16 PF01519.16 gi|307594762|ref|YP_003901079.1| - 8.2 7.0 18.3 17 6.0 0.8 5.0 4 1 1 5 5 4 0 Protein of unknown function DUF16 DUF4988 PF16378.5 gi|307594762|ref|YP_003901079.1| - 8.9 5.9 6.3 59 3.3 0.0 4.5 4 2 0 5 5 3 0 Domain of unknown function BST2 PF16716.5 gi|307594762|ref|YP_003901079.1| - 9.6 6.9 19.5 0.15 12.7 2.4 5.6 4 2 4 8 8 3 0 Bone marrow stromal antigen 2 Cauli_AT PF03233.13 gi|307594762|ref|YP_003901079.1| - 9.8 6.1 10.2 59 3.5 0.0 4.2 4 1 0 4 4 3 0 Aphid transmission protein Succ_CoA_lig PF13607.6 gi|307594764|ref|YP_003901081.1| - 8.1e-46 155.3 4.2 1.1e-45 154.9 0.3 2.9 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|307594764|ref|YP_003901081.1| - 1.1e-24 87.1 0.9 1.1e-22 80.7 0.1 3.2 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|307594764|ref|YP_003901081.1| - 6.2e-12 46.0 0.0 2.4e-11 44.1 0.1 2.0 2 0 0 2 2 2 1 CoA binding domain Na_H_Exchanger PF00999.21 gi|307594765|ref|YP_003901082.1| - 1.8e-47 162.0 53.9 2.3e-47 161.6 53.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF5357 PF17310.2 gi|307594765|ref|YP_003901082.1| - 1 7.8 4.5 1.7 7.2 0.6 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5357) YhfC PF10086.9 gi|307594767|ref|YP_003901084.1| - 3e-05 23.5 14.8 0.0012 18.2 6.5 2.5 2 1 0 2 2 2 2 YhfC intramembrane metalloprotease Voltage_CLC PF00654.20 gi|307594768|ref|YP_003901085.1| - 9e-70 235.7 35.1 3e-69 233.9 28.5 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel Methyltransf_11 PF08241.12 gi|307594769|ref|YP_003901086.1| - 8.2e-06 26.4 0.0 1.3e-05 25.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307594769|ref|YP_003901086.1| - 7.9e-05 23.3 0.0 0.00011 22.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|307594769|ref|YP_003901086.1| - 0.0027 17.6 0.1 0.0048 16.7 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307594769|ref|YP_003901086.1| - 0.055 13.3 1.0 0.26 11.1 1.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|307594769|ref|YP_003901086.1| - 0.11 12.2 0.1 0.16 11.7 0.1 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|307594769|ref|YP_003901086.1| - 0.22 11.1 0.1 0.4 10.2 0.1 1.5 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.14 gi|307594769|ref|YP_003901086.1| - 0.28 10.7 0.7 0.54 9.8 0.7 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|307594769|ref|YP_003901086.1| - 0.53 8.8 0.9 8.8 4.7 0.0 2.0 1 1 1 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MFS_1 PF07690.16 gi|307594770|ref|YP_003901087.1| - 2.1e-17 63.1 45.4 2.8e-10 39.7 9.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307594770|ref|YP_003901087.1| - 0.052 12.4 21.2 0.013 14.4 5.1 3.3 2 1 1 3 3 3 0 Sugar (and other) transporter ABC_tran PF00005.27 gi|307594771|ref|YP_003901088.1| - 9.1e-23 81.3 0.0 1.5e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307594771|ref|YP_003901088.1| - 1.4e-11 44.8 1.0 1e-06 28.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307594771|ref|YP_003901088.1| - 0.00022 20.8 0.0 0.32 10.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|307594771|ref|YP_003901088.1| - 0.0038 17.4 0.0 0.018 15.2 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|307594771|ref|YP_003901088.1| - 0.0097 16.3 0.3 0.056 13.9 0.1 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|307594771|ref|YP_003901088.1| - 0.029 14.8 0.1 0.12 12.8 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.25 gi|307594771|ref|YP_003901088.1| - 0.047 13.3 0.0 0.064 12.9 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.6 gi|307594771|ref|YP_003901088.1| - 0.059 13.9 0.1 0.096 13.2 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|307594771|ref|YP_003901088.1| - 0.11 12.3 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|307594771|ref|YP_003901088.1| - 0.11 12.2 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|307594771|ref|YP_003901088.1| - 0.15 11.7 0.0 2.6 7.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.6 gi|307594771|ref|YP_003901088.1| - 0.16 12.3 0.2 0.62 10.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|307594771|ref|YP_003901088.1| - 0.18 11.3 0.0 0.45 10.0 0.1 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region SHS2_Rpb7-N PF03876.17 gi|307594773|ref|YP_003901090.1| - 3.5e-15 56.1 0.2 7.1e-15 55.1 0.2 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|307594773|ref|YP_003901090.1| - 4.4e-11 43.0 2.0 4.4e-11 43.0 2.0 2.3 2 1 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|307594773|ref|YP_003901090.1| - 0.015 15.6 0.0 0.02 15.1 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 SUI1 PF01253.22 gi|307594775|ref|YP_003901092.1| - 5.8e-16 58.8 0.4 9.3e-16 58.1 0.4 1.3 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|307594775|ref|YP_003901092.1| - 0.0032 17.7 0.4 0.0061 16.8 0.4 1.7 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) PNP_UDP_1 PF01048.20 gi|307594777|ref|YP_003901094.1| - 1.2e-36 126.1 0.0 1.4e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DEAD PF00270.29 gi|307594779|ref|YP_003901096.1| - 1.7e-31 109.4 0.2 5.8e-31 107.6 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|307594779|ref|YP_003901096.1| - 1e-23 84.1 0.2 3.4e-23 82.4 0.0 2.0 2 0 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.31 gi|307594779|ref|YP_003901096.1| - 1.9e-18 66.8 0.0 4.9e-16 59.1 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|307594779|ref|YP_003901096.1| - 1.1e-06 28.8 0.0 2.3e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HypA PF01155.19 gi|307594779|ref|YP_003901096.1| - 0.00067 19.7 0.1 0.0015 18.5 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_19 PF13245.6 gi|307594779|ref|YP_003901096.1| - 0.0054 17.1 0.8 0.039 14.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|307594779|ref|YP_003901096.1| - 0.018 14.7 0.4 0.086 12.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|307594779|ref|YP_003901096.1| - 0.085 13.1 1.3 1.3 9.3 0.2 3.2 2 1 0 2 2 2 0 AAA domain SNF2_N PF00176.23 gi|307594779|ref|YP_003901096.1| - 0.1 11.3 0.0 0.21 10.3 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain CbiA PF01656.23 gi|307594780|ref|YP_003901097.1| - 0.00029 20.9 0.1 0.00043 20.3 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|307594780|ref|YP_003901097.1| - 0.0012 18.4 0.4 0.0022 17.5 0.4 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|307594780|ref|YP_003901097.1| - 0.033 13.5 0.1 0.065 12.5 0.1 1.4 1 0 0 1 1 1 0 ATPase MipZ AAA_31 PF13614.6 gi|307594780|ref|YP_003901097.1| - 0.083 12.8 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|307594782|ref|YP_003901099.1| - 2.3e-06 27.7 0.0 3.1e-06 27.3 0.0 1.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|307594782|ref|YP_003901099.1| - 0.00042 20.3 0.2 0.93 9.4 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|307594782|ref|YP_003901099.1| - 0.012 16.2 0.0 0.022 15.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain ParA PF10609.9 gi|307594782|ref|YP_003901099.1| - 0.051 13.0 0.1 0.081 12.4 0.1 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase HpcH_HpaI PF03328.14 gi|307594782|ref|YP_003901099.1| - 0.063 12.4 0.1 0.084 12.0 0.1 1.2 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family CBP_BcsQ PF06564.12 gi|307594782|ref|YP_003901099.1| - 0.18 11.2 0.2 0.33 10.4 0.2 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|307594782|ref|YP_003901099.1| - 0.54 9.8 2.1 13 5.2 0.1 2.4 2 1 0 2 2 2 0 AAA domain BLOC1_2 PF10046.9 gi|307594783|ref|YP_003901100.1| - 0.0015 18.8 2.9 0.0072 16.6 2.9 1.9 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|307594783|ref|YP_003901100.1| - 0.005 17.3 2.4 0.012 16.0 2.4 1.7 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein FapA PF03961.13 gi|307594783|ref|YP_003901100.1| - 0.0053 15.4 2.6 0.0054 15.4 2.6 1.0 1 0 0 1 1 1 1 Flagellar Assembly Protein A Baculo_PEP_C PF04513.12 gi|307594783|ref|YP_003901100.1| - 0.0054 16.8 1.4 0.0076 16.3 1.4 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Seryl_tRNA_N PF02403.22 gi|307594783|ref|YP_003901100.1| - 0.0064 16.7 1.2 0.0087 16.3 1.2 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DASH_Duo1 PF08651.10 gi|307594783|ref|YP_003901100.1| - 0.0085 15.8 1.2 0.022 14.5 0.7 1.9 1 1 1 2 2 2 1 DASH complex subunit Duo1 Snapin_Pallidin PF14712.6 gi|307594783|ref|YP_003901100.1| - 0.022 15.2 2.0 0.055 13.9 2.0 1.7 1 1 0 1 1 1 0 Snapin/Pallidin DUF2205 PF10224.9 gi|307594783|ref|YP_003901100.1| - 0.028 14.4 0.6 0.054 13.5 0.4 1.6 1 1 0 1 1 1 0 Short coiled-coil protein DASH_Dad1 PF08649.10 gi|307594783|ref|YP_003901100.1| - 0.029 14.5 2.6 0.49 10.6 0.1 2.4 2 0 0 2 2 2 0 DASH complex subunit Dad1 WXG100 PF06013.12 gi|307594783|ref|YP_003901100.1| - 0.039 14.2 0.0 0.25 11.6 0.0 2.0 1 1 0 1 1 1 0 Proteins of 100 residues with WXG gpW PF02831.15 gi|307594783|ref|YP_003901100.1| - 0.04 13.8 0.1 0.53 10.2 0.0 2.3 2 0 0 2 2 2 0 gpW RPW8 PF05659.11 gi|307594783|ref|YP_003901100.1| - 0.043 13.5 1.6 0.076 12.7 1.6 1.5 1 1 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF1664 PF07889.12 gi|307594783|ref|YP_003901100.1| - 0.047 13.7 0.6 0.063 13.3 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|307594783|ref|YP_003901100.1| - 0.054 13.8 0.4 0.088 13.1 0.4 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) COG2 PF06148.11 gi|307594783|ref|YP_003901100.1| - 0.057 13.5 0.2 0.078 13.1 0.2 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1722 PF08349.11 gi|307594783|ref|YP_003901100.1| - 0.073 13.4 0.1 0.11 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) Prefoldin PF02996.17 gi|307594783|ref|YP_003901100.1| - 0.13 12.2 2.4 1.5 8.8 0.3 2.3 1 1 1 2 2 2 0 Prefoldin subunit DHR10 PF18595.1 gi|307594783|ref|YP_003901100.1| - 0.17 11.9 5.1 0.039 14.0 1.5 1.8 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain Fib_alpha PF08702.10 gi|307594783|ref|YP_003901100.1| - 0.31 11.2 2.9 1.1 9.4 2.9 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family NYD-SP28_assoc PF14775.6 gi|307594783|ref|YP_003901100.1| - 0.32 11.1 3.6 0.48 10.6 1.5 2.0 1 1 1 2 2 2 0 Sperm tail C-terminal domain FlaC_arch PF05377.11 gi|307594783|ref|YP_003901100.1| - 1.2 9.5 0.1 1.2 9.5 0.1 2.7 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) T2SSE PF00437.20 gi|307594784|ref|YP_003901101.1| - 6.3e-20 71.4 0.0 1.1e-19 70.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|307594784|ref|YP_003901101.1| - 0.00065 19.3 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|307594784|ref|YP_003901101.1| - 0.0042 17.2 0.0 0.0067 16.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|307594784|ref|YP_003901101.1| - 0.01 16.2 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|307594784|ref|YP_003901101.1| - 0.015 14.7 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|307594784|ref|YP_003901101.1| - 0.027 14.6 0.0 0.056 13.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|307594784|ref|YP_003901101.1| - 0.073 12.8 0.2 0.15 11.8 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|307594784|ref|YP_003901101.1| - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|307594784|ref|YP_003901101.1| - 0.18 11.6 0.1 0.25 11.1 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|307594784|ref|YP_003901101.1| - 0.19 11.4 0.0 0.31 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|307594784|ref|YP_003901101.1| - 0.19 12.3 0.0 0.33 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|307594786|ref|YP_003901103.1| - 2.2e-14 53.8 0.0 2.9e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|307594786|ref|YP_003901103.1| - 2.3e-13 50.3 0.0 2.7e-13 50.1 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|307594786|ref|YP_003901103.1| - 3e-06 26.6 0.1 4.7e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|307594786|ref|YP_003901103.1| - 3.7e-06 26.6 0.2 5.7e-06 26.0 0.2 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|307594786|ref|YP_003901103.1| - 0.00099 18.7 0.0 0.0015 18.1 0.0 1.3 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|307594786|ref|YP_003901103.1| - 0.0025 17.2 0.0 0.01 15.1 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ VirC1 PF07015.11 gi|307594786|ref|YP_003901103.1| - 0.018 14.3 0.1 0.029 13.6 0.1 1.3 1 0 0 1 1 1 0 VirC1 protein Fer4_NifH PF00142.18 gi|307594786|ref|YP_003901103.1| - 0.067 12.6 0.0 0.093 12.2 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ATP_bind_1 PF03029.17 gi|307594786|ref|YP_003901103.1| - 0.23 11.2 0.0 1.1 8.9 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein UCR_UQCRX_QCR9 PF05365.12 gi|307594787|ref|YP_003901104.1| - 0.51 10.3 0.1 0.51 10.3 0.1 1.9 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like LTD PF00932.19 gi|307594788|ref|YP_003901105.1| - 0.042 14.2 0.2 0.056 13.8 0.2 1.3 1 0 0 1 1 1 0 Lamin Tail Domain Cation_efflux PF01545.21 gi|307594788|ref|YP_003901105.1| - 0.37 10.5 7.7 0.44 10.3 6.8 1.8 1 1 1 2 2 2 0 Cation efflux family HRG PF16954.5 gi|307594788|ref|YP_003901105.1| - 9.8 6.7 7.9 9.5 6.7 0.3 2.8 2 1 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene Pterin_4a PF01329.19 gi|307594789|ref|YP_003901106.1| - 5.9e-27 93.7 0.1 6.8e-27 93.5 0.1 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase gag-asp_proteas PF13975.6 gi|307594792|ref|YP_003901109.1| - 3.4e-09 37.1 0.1 6.9e-09 36.2 0.1 1.5 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|307594792|ref|YP_003901109.1| - 2.3e-08 34.6 0.2 3.9e-08 33.8 0.2 1.3 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.20 gi|307594792|ref|YP_003901109.1| - 0.063 13.6 0.2 0.24 11.7 0.2 1.9 1 1 0 1 1 1 0 Retroviral aspartyl protease DUF2969 PF11184.8 gi|307594793|ref|YP_003901110.1| - 0.099 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2969) Cyt_bd_oxida_I PF01654.17 gi|307594794|ref|YP_003901111.1| - 1.9e-12 46.6 14.8 1.9e-12 46.6 14.8 2.7 1 1 1 2 2 2 1 Cytochrome bd terminal oxidase subunit I DUF2678 PF10856.8 gi|307594794|ref|YP_003901111.1| - 0.016 15.2 4.4 0.032 14.2 3.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2678) Cyt_bd_oxida_I PF01654.17 gi|307594795|ref|YP_003901112.1| - 1.2e-73 248.2 33.2 2.1e-73 247.4 33.2 1.3 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I EVE PF01878.18 gi|307594796|ref|YP_003901113.1| - 2e-07 31.1 0.0 4.5e-07 30.0 0.0 1.6 2 0 0 2 2 2 1 EVE domain BTAD PF03704.17 gi|307594796|ref|YP_003901113.1| - 0.068 13.6 1.7 0.14 12.5 0.7 1.9 2 0 0 2 2 2 0 Bacterial transcriptional activator domain MFS_1 PF07690.16 gi|307594797|ref|YP_003901114.1| - 1.2e-23 83.6 54.4 1.2e-23 83.6 54.4 2.5 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307594797|ref|YP_003901114.1| - 5.1e-17 61.9 38.9 3.8e-16 59.0 9.7 2.9 1 1 1 2 2 2 2 Sugar (and other) transporter Calici_PP_N PF08405.11 gi|307594797|ref|YP_003901114.1| - 0.22 10.3 2.5 0.18 10.6 0.4 1.8 2 0 0 2 2 2 0 Viral polyprotein N-terminal PLDc_2 PF13091.6 gi|307594798|ref|YP_003901115.1| - 7.6e-13 48.5 0.0 1.3e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 PLD-like domain RE_NgoFVII PF09565.10 gi|307594798|ref|YP_003901115.1| - 0.0011 18.4 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 NgoFVII restriction endonuclease EVE PF01878.18 gi|307594799|ref|YP_003901116.1| - 4.3e-05 23.5 0.0 7.1e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 EVE domain HEPN PF05168.14 gi|307594800|ref|YP_003901117.1| - 1.5e-11 44.4 0.0 1.8e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 HEPN domain DUF1771 PF08590.10 gi|307594800|ref|YP_003901117.1| - 0.0025 18.2 1.7 0.026 14.9 0.3 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1771) DUF2267 PF10025.9 gi|307594800|ref|YP_003901117.1| - 0.01 16.1 0.1 1.7 8.9 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) TPR_10 PF13374.6 gi|307594800|ref|YP_003901117.1| - 0.18 11.7 4.3 0.43 10.5 0.1 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat Polbeta PF18765.1 gi|307594801|ref|YP_003901118.1| - 1.4e-09 37.9 0.0 2e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|307594801|ref|YP_003901118.1| - 1.8e-07 31.4 0.0 2.2e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain PAS_3 PF08447.12 gi|307594801|ref|YP_003901118.1| - 0.022 15.1 0.2 0.041 14.2 0.2 1.5 1 0 0 1 1 1 0 PAS fold DUF294 PF03445.13 gi|307594801|ref|YP_003901118.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Baculo_11_kDa PF06143.11 gi|307594802|ref|YP_003901119.1| - 9.8 5.8 8.2 53 3.5 6.5 2.0 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF3378 PF11858.8 gi|307594803|ref|YP_003901120.1| - 0.013 15.6 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3378) Pribosyltran PF00156.27 gi|307594805|ref|YP_003901122.1| - 2.1e-12 46.9 0.0 2.8e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|307594805|ref|YP_003901122.1| - 0.041 13.4 0.1 0.17 11.4 0.1 1.7 1 1 0 1 1 1 0 Phosphoribosyl transferase DUF1297 PF06973.12 gi|307594806|ref|YP_003901123.1| - 1.1e-73 246.8 0.0 1.4e-73 246.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|307594806|ref|YP_003901123.1| - 1.4e-42 144.6 0.0 2e-42 144.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) CPSase_L_D2 PF02786.17 gi|307594806|ref|YP_003901123.1| - 0.033 13.7 0.0 0.052 13.0 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF1297 PF06973.12 gi|307594807|ref|YP_003901124.1| - 1.1e-77 259.8 0.0 1.4e-77 259.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|307594807|ref|YP_003901124.1| - 2.8e-45 153.2 0.0 5.2e-45 152.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) PEPcase_2 PF14010.6 gi|307594808|ref|YP_003901125.1| - 7.8e-186 618.4 0.0 8.8e-186 618.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PDT PF00800.18 gi|307594809|ref|YP_003901126.1| - 2.8e-46 157.6 0.0 4.3e-46 157.0 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|307594809|ref|YP_003901126.1| - 5.4e-10 38.9 0.0 1.1e-07 31.5 0.0 2.4 2 0 0 2 2 2 2 ACT domain Glu_synthase PF01645.17 gi|307594810|ref|YP_003901127.1| - 3.4e-97 325.9 3.8 2.7e-93 313.1 1.1 2.5 2 1 1 3 3 3 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|307594810|ref|YP_003901127.1| - 9e-18 64.7 0.0 3.2e-06 26.8 0.0 3.2 3 0 0 3 3 3 3 Glutamate synthase central domain FMN_dh PF01070.18 gi|307594810|ref|YP_003901127.1| - 1.5e-09 37.4 6.7 2.7e-06 26.6 2.2 2.8 3 0 0 3 3 3 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|307594810|ref|YP_003901127.1| - 2.9e-07 30.2 2.9 0.00028 20.4 1.6 2.5 2 0 0 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.25 gi|307594810|ref|YP_003901127.1| - 3.4e-07 29.6 4.4 3.2e-05 23.1 1.9 2.3 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|307594810|ref|YP_003901127.1| - 0.0014 17.9 0.6 0.0014 17.9 0.6 2.1 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|307594810|ref|YP_003901127.1| - 0.005 16.1 0.0 0.015 14.5 0.0 1.8 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase GXGXG PF01493.19 gi|307594811|ref|YP_003901128.1| - 9.2e-28 97.1 3.9 1.7e-27 96.3 3.9 1.4 1 0 0 1 1 1 1 GXGXG motif GATase_6 PF13522.6 gi|307594811|ref|YP_003901128.1| - 6.1e-07 29.7 0.1 4.2e-05 23.7 0.1 2.6 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|307594811|ref|YP_003901128.1| - 0.00034 19.4 0.4 0.031 13.0 0.1 2.8 2 1 0 2 2 2 1 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|307594811|ref|YP_003901128.1| - 0.00074 19.4 0.1 0.015 15.2 0.1 2.3 1 1 0 1 1 1 1 Glutamine amidotransferase domain Iso_dh PF00180.20 gi|307594812|ref|YP_003901129.1| - 1.2e-103 347.0 0.4 1.3e-103 346.8 0.4 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|307594812|ref|YP_003901129.1| - 0.0072 15.8 0.0 0.016 14.6 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA DUF166 PF02593.14 gi|307594812|ref|YP_003901129.1| - 0.0086 15.6 0.2 0.036 13.6 0.1 2.1 1 1 2 3 3 3 1 Domain of unknown function Cupin_2 PF07883.11 gi|307594813|ref|YP_003901130.1| - 7.4e-16 57.6 0.2 9.6e-16 57.3 0.2 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|307594813|ref|YP_003901130.1| - 6.4e-10 39.1 0.0 7.8e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|307594813|ref|YP_003901130.1| - 1.9e-07 30.8 0.1 2.5e-07 30.4 0.1 1.1 1 0 0 1 1 1 1 Cupin ARD PF03079.14 gi|307594813|ref|YP_003901130.1| - 9.1e-07 29.2 0.1 1.1e-06 28.9 0.1 1.1 1 0 0 1 1 1 1 ARD/ARD' family MannoseP_isomer PF01050.18 gi|307594813|ref|YP_003901130.1| - 0.00036 20.5 0.2 0.0004 20.3 0.2 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_4 PF08007.12 gi|307594813|ref|YP_003901130.1| - 0.0025 17.3 0.0 0.0028 17.2 0.0 1.2 1 0 0 1 1 1 1 Cupin superfamily protein EutQ PF06249.12 gi|307594813|ref|YP_003901130.1| - 0.004 16.9 0.0 0.0043 16.8 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ CENP-C_C PF11699.8 gi|307594813|ref|YP_003901130.1| - 0.0066 16.6 0.0 0.0092 16.2 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like DUF1971 PF09313.11 gi|307594813|ref|YP_003901130.1| - 0.013 15.5 0.1 0.023 14.7 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1971) JmjC PF02373.22 gi|307594813|ref|YP_003901130.1| - 0.034 14.6 0.0 0.041 14.3 0.0 1.2 1 0 0 1 1 1 0 JmjC domain, hydroxylase Cupin_7 PF12973.7 gi|307594813|ref|YP_003901130.1| - 0.06 13.3 0.1 0.079 12.9 0.1 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain DMSP_lyase PF16867.5 gi|307594813|ref|YP_003901130.1| - 0.067 12.8 0.1 0.092 12.4 0.0 1.2 1 1 0 1 1 1 0 Dimethlysulfonioproprionate lyase KduI PF04962.12 gi|307594813|ref|YP_003901130.1| - 0.085 12.1 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 KduI/IolB family Cupin_8 PF13621.6 gi|307594813|ref|YP_003901130.1| - 0.13 11.9 0.3 3.4 7.3 0.0 2.0 1 1 1 2 2 2 0 Cupin-like domain HMGL-like PF00682.19 gi|307594814|ref|YP_003901131.1| - 2.6e-89 299.3 2.1 4.1e-89 298.6 2.1 1.3 1 0 0 1 1 1 1 HMGL-like Cu_bind_CorA PF18252.1 gi|307594814|ref|YP_003901131.1| - 0.11 12.1 0.3 0.26 10.9 0.1 1.7 2 0 0 2 2 2 0 Copper(I)-binding protein CorA Radical_SAM PF04055.21 gi|307594814|ref|YP_003901131.1| - 0.16 12.4 0.2 1.8 9.0 0.1 2.4 2 1 0 2 2 2 0 Radical SAM superfamily TPP_enzyme_N PF02776.18 gi|307594815|ref|YP_003901132.1| - 1e-55 188.0 0.2 1.3e-53 181.2 0.1 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|307594815|ref|YP_003901132.1| - 1.8e-44 150.8 0.0 6.3e-44 149.0 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|307594815|ref|YP_003901132.1| - 2.8e-42 144.1 0.4 3.3e-41 140.6 0.0 2.7 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain STAS_2 PF13466.6 gi|307594815|ref|YP_003901132.1| - 0.045 14.1 0.6 0.85 10.0 0.1 3.2 4 0 0 4 4 4 0 STAS domain ACT_5 PF13710.6 gi|307594816|ref|YP_003901133.1| - 9.7e-12 44.6 1.1 1.3e-11 44.1 1.1 1.2 1 0 0 1 1 1 1 ACT domain Orthopox_A43R PF06517.11 gi|307594816|ref|YP_003901133.1| - 0.016 15.0 0.2 0.02 14.7 0.2 1.2 1 0 0 1 1 1 0 Orthopoxvirus A43R protein IlvN PF07991.12 gi|307594817|ref|YP_003901134.1| - 6.7e-65 217.7 0.1 1.2e-64 216.9 0.0 1.4 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|307594817|ref|YP_003901134.1| - 4.3e-52 176.2 0.2 5.5e-52 175.9 0.2 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.21 gi|307594817|ref|YP_003901134.1| - 9.8e-06 25.7 0.1 2.1e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|307594817|ref|YP_003901134.1| - 1.9e-05 24.1 0.1 7.5e-05 22.2 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|307594817|ref|YP_003901134.1| - 0.00039 20.9 0.0 0.0011 19.5 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|307594817|ref|YP_003901134.1| - 0.0023 18.1 0.0 0.0045 17.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|307594817|ref|YP_003901134.1| - 0.016 14.8 0.1 0.035 13.7 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NusB PF01029.18 gi|307594817|ref|YP_003901134.1| - 0.059 13.6 0.1 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 NusB family FlpD PF02662.16 gi|307594818|ref|YP_003901135.1| - 1.4e-37 128.4 0.0 7.9e-37 126.0 0.0 2.4 2 0 0 2 2 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|307594818|ref|YP_003901135.1| - 1.7e-34 119.4 10.1 5.3e-12 45.6 0.0 5.0 4 1 0 4 4 4 4 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|307594818|ref|YP_003901135.1| - 3.7e-28 96.2 58.6 2.8e-08 33.2 3.8 7.4 7 0 0 7 7 7 5 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307594818|ref|YP_003901135.1| - 4.8e-22 78.3 42.1 1e-08 35.6 11.4 6.2 4 2 3 7 7 7 6 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307594818|ref|YP_003901135.1| - 1.7e-18 65.8 59.9 1.2e-06 28.4 3.0 7.3 7 0 0 7 7 7 6 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307594818|ref|YP_003901135.1| - 2.7e-16 59.4 37.5 1.2e-07 31.7 5.6 5.4 4 1 1 5 5 5 4 4Fe-4S dicluster domain Pyr_redox_3 PF13738.6 gi|307594818|ref|YP_003901135.1| - 1.4e-14 54.1 3.8 0.00038 19.8 0.0 5.4 3 1 1 4 4 4 4 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.6 gi|307594818|ref|YP_003901135.1| - 3e-13 50.5 38.5 5.3e-05 24.1 0.4 6.7 5 1 2 7 7 7 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|307594818|ref|YP_003901135.1| - 5.5e-13 48.8 50.4 1.6e-06 28.1 12.3 5.8 4 3 3 7 7 6 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307594818|ref|YP_003901135.1| - 6.3e-13 48.7 45.0 1.5e-07 31.5 9.0 4.9 4 2 2 6 6 5 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307594818|ref|YP_003901135.1| - 1.1e-11 45.1 36.0 0.0065 17.0 1.5 6.8 7 0 0 7 7 6 5 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|307594818|ref|YP_003901135.1| - 2e-11 43.9 2.9 2.8e-06 27.5 0.2 3.1 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|307594818|ref|YP_003901135.1| - 4.1e-11 43.3 9.4 4.9e-07 30.2 1.1 5.4 4 2 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|307594818|ref|YP_003901135.1| - 5.7e-10 38.5 10.5 0.00047 19.0 2.6 3.2 3 0 0 3 3 3 3 HI0933-like protein Fer4_2 PF12797.7 gi|307594818|ref|YP_003901135.1| - 1.2e-09 37.7 58.1 0.0014 18.6 3.3 7.2 7 0 0 7 7 6 5 4Fe-4S binding domain GIDA PF01134.22 gi|307594818|ref|YP_003901135.1| - 2.3e-09 36.9 15.2 5.4e-07 29.0 0.1 5.1 4 1 0 5 5 5 1 Glucose inhibited division protein A Fer4_8 PF13183.6 gi|307594818|ref|YP_003901135.1| - 7.5e-09 35.9 30.4 0.026 15.0 0.7 5.8 5 1 0 5 5 5 4 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|307594818|ref|YP_003901135.1| - 1.4e-07 31.2 13.9 7.5e-07 28.8 4.0 2.6 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|307594818|ref|YP_003901135.1| - 5.5e-07 29.0 12.1 1.1e-05 24.7 3.4 2.4 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|307594818|ref|YP_003901135.1| - 8.8e-07 28.4 3.2 3.4e-05 23.3 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|307594818|ref|YP_003901135.1| - 2.7e-06 26.9 7.5 0.0069 15.7 0.7 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|307594818|ref|YP_003901135.1| - 6.6e-05 22.6 18.9 0.00035 20.3 2.9 4.7 5 0 0 5 5 5 2 FAD dependent oxidoreductase Fer4_4 PF12800.7 gi|307594818|ref|YP_003901135.1| - 0.00011 22.4 51.3 0.37 11.4 4.8 6.6 6 0 0 6 6 6 4 4Fe-4S binding domain NAD_binding_9 PF13454.6 gi|307594818|ref|YP_003901135.1| - 0.00031 20.8 3.8 2.3 8.2 0.0 3.9 4 0 0 4 4 3 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|307594818|ref|YP_003901135.1| - 0.00045 20.6 1.2 1.2 9.6 0.0 3.7 4 0 0 4 4 2 1 Putative NAD(P)-binding Thi4 PF01946.17 gi|307594818|ref|YP_003901135.1| - 0.011 14.9 10.0 0.049 12.9 0.2 3.8 2 1 2 4 4 4 0 Thi4 family Lycopene_cycl PF05834.12 gi|307594818|ref|YP_003901135.1| - 0.024 13.7 10.1 0.27 10.2 0.9 3.2 2 1 1 3 3 3 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|307594818|ref|YP_003901135.1| - 0.053 12.7 0.2 1.7 7.7 0.0 2.7 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) ThiF PF00899.21 gi|307594818|ref|YP_003901135.1| - 0.092 12.1 1.6 2.3 7.5 0.1 2.6 2 0 0 2 2 2 0 ThiF family Amino_oxidase PF01593.24 gi|307594818|ref|YP_003901135.1| - 0.13 11.5 12.8 0.13 11.5 0.2 4.7 5 0 0 5 5 5 0 Flavin containing amine oxidoreductase Fer4_3 PF12798.7 gi|307594818|ref|YP_003901135.1| - 0.14 13.2 74.4 0.079 13.9 5.8 7.8 7 0 0 7 7 6 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|307594818|ref|YP_003901135.1| - 0.19 12.6 32.2 0.39 11.6 0.4 6.4 6 0 0 6 6 6 0 4Fe-4S dicluster domain Shikimate_DH PF01488.20 gi|307594818|ref|YP_003901135.1| - 0.2 11.7 4.2 9.7 6.2 0.5 2.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Fer4_15 PF13459.6 gi|307594818|ref|YP_003901135.1| - 0.33 11.7 26.6 0.22 12.3 0.2 5.7 5 1 0 5 5 4 0 4Fe-4S single cluster domain 3HCDH_N PF02737.18 gi|307594818|ref|YP_003901135.1| - 1.9 8.4 5.3 0.56 10.1 0.5 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_13 PF13370.6 gi|307594818|ref|YP_003901135.1| - 3.4 8.3 40.6 2 9.0 0.8 6.4 6 0 0 6 6 6 0 4Fe-4S single cluster domain of Ferredoxin I Trp_halogenase PF04820.14 gi|307594818|ref|YP_003901135.1| - 6.4 5.5 8.4 0.19 10.5 1.7 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Fer4_18 PF13746.6 gi|307594818|ref|YP_003901135.1| - 6.8 6.9 41.3 3.1 8.0 0.3 6.4 4 2 1 6 6 6 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307594819|ref|YP_003901136.1| - 1.5e-10 41.5 17.7 1.9e-07 31.5 9.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307594819|ref|YP_003901136.1| - 3.7e-10 39.8 18.7 8.3e-08 32.3 9.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307594819|ref|YP_003901136.1| - 2.6e-09 37.4 22.1 3.1e-08 33.9 10.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307594819|ref|YP_003901136.1| - 3.6e-09 36.6 8.3 6.9e-09 35.7 8.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307594819|ref|YP_003901136.1| - 1e-07 31.4 12.9 0.00027 20.6 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307594819|ref|YP_003901136.1| - 1.5e-07 31.9 8.4 3.9e-07 30.6 8.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307594819|ref|YP_003901136.1| - 2.8e-07 30.3 8.4 0.0026 17.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307594819|ref|YP_003901136.1| - 6.1e-07 29.2 14.2 0.0028 17.7 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307594819|ref|YP_003901136.1| - 6.3e-06 26.2 7.0 0.011 15.9 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307594819|ref|YP_003901136.1| - 3.1e-05 24.8 12.4 0.0016 19.3 12.7 2.1 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|307594819|ref|YP_003901136.1| - 3.3e-05 24.1 7.9 0.041 14.4 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|307594819|ref|YP_003901136.1| - 0.00082 19.1 4.5 0.031 14.0 0.6 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|307594819|ref|YP_003901136.1| - 0.0022 18.8 17.5 0.051 14.5 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|307594819|ref|YP_003901136.1| - 0.0082 17.0 14.0 0.068 14.0 1.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|307594819|ref|YP_003901136.1| - 0.0085 16.3 6.2 0.17 12.1 0.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307594819|ref|YP_003901136.1| - 0.033 14.9 6.0 0.14 12.9 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|307594819|ref|YP_003901136.1| - 0.26 11.9 11.6 2.1 9.0 2.1 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I POR PF01558.18 gi|307594820|ref|YP_003901137.1| - 1.4e-28 100.2 0.1 1.7e-28 99.9 0.1 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|307594821|ref|YP_003901138.1| - 5.2e-15 54.6 13.8 3.6e-08 32.9 4.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307594821|ref|YP_003901138.1| - 9.8e-11 41.6 7.0 1.5e-10 41.1 7.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307594821|ref|YP_003901138.1| - 7e-10 38.9 20.4 4e-08 33.3 10.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307594821|ref|YP_003901138.1| - 8.9e-10 38.1 12.3 5.6e-05 23.0 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|307594821|ref|YP_003901138.1| - 2.9e-09 36.6 14.4 5.6e-05 23.0 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307594821|ref|YP_003901138.1| - 5.1e-08 33.4 20.2 8.4e-07 29.5 10.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307594821|ref|YP_003901138.1| - 7.8e-08 33.1 8.2 0.0012 19.7 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|307594821|ref|YP_003901138.1| - 1.8e-07 31.2 19.4 2.1e-06 27.8 9.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307594821|ref|YP_003901138.1| - 2.1e-06 28.2 4.0 0.02 15.4 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307594821|ref|YP_003901138.1| - 4.7e-06 27.0 5.8 7.8e-06 26.2 5.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307594821|ref|YP_003901138.1| - 5.6e-05 23.8 11.4 0.058 14.1 0.3 2.9 2 1 1 3 3 3 3 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|307594821|ref|YP_003901138.1| - 0.0007 20.1 12.9 0.013 16.0 1.8 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|307594821|ref|YP_003901138.1| - 0.0021 18.4 11.0 0.02 15.4 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|307594821|ref|YP_003901138.1| - 0.052 14.4 9.8 0.078 13.8 1.2 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|307594821|ref|YP_003901138.1| - 0.84 9.8 7.4 1.2 9.3 0.8 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S POR_N PF01855.19 gi|307594822|ref|YP_003901139.1| - 5.3e-71 239.0 2.2 6.9e-71 238.7 2.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|307594822|ref|YP_003901139.1| - 5.9e-27 94.0 0.2 1.2e-26 93.0 0.2 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|307594822|ref|YP_003901139.1| - 0.00081 19.3 0.2 0.023 14.6 0.0 2.8 2 1 0 2 2 2 1 Transketolase, C-terminal domain ZnuA PF01297.17 gi|307594822|ref|YP_003901139.1| - 0.035 13.5 0.1 0.066 12.6 0.1 1.4 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic TPP_enzyme_C PF02775.21 gi|307594823|ref|YP_003901140.1| - 3.2e-24 85.5 0.2 4.8e-24 84.9 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PK_C PF02887.16 gi|307594823|ref|YP_003901140.1| - 0.061 13.6 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Pyruvate kinase, alpha/beta domain Aconitase PF00330.20 gi|307594824|ref|YP_003901141.1| - 3.5e-74 250.5 0.6 6.4e-72 243.0 0.6 2.5 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|307594824|ref|YP_003901141.1| - 9.6e-05 21.3 0.0 0.00015 20.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.19 gi|307594826|ref|YP_003901143.1| - 3.2e-19 69.6 0.1 4.9e-19 69.0 0.1 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain HMGL-like PF00682.19 gi|307594827|ref|YP_003901144.1| - 1.1e-53 182.5 0.0 1.6e-53 182.0 0.0 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|307594827|ref|YP_003901144.1| - 1.1e-23 83.6 0.2 4.2e-23 81.7 0.0 2.0 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain Bac_luciferase PF00296.20 gi|307594827|ref|YP_003901144.1| - 0.027 13.9 0.0 0.12 11.7 0.0 2.0 3 0 0 3 3 3 0 Luciferase-like monooxygenase PEP_mutase PF13714.6 gi|307594827|ref|YP_003901144.1| - 0.095 12.1 0.1 0.15 11.4 0.1 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase LAGLIDADG_WhiA PF14527.6 gi|307594828|ref|YP_003901145.1| - 0.00026 21.0 0.7 0.044 13.9 0.1 2.7 2 1 1 3 3 3 1 WhiA LAGLIDADG-like domain ADD_ATRX PF17981.1 gi|307594828|ref|YP_003901145.1| - 0.016 15.1 0.2 0.035 14.0 0.2 1.5 1 0 0 1 1 1 0 Cysteine Rich ADD domain YscJ_FliF PF01514.17 gi|307594828|ref|YP_003901145.1| - 0.025 14.2 0.2 0.51 10.0 0.1 2.3 2 0 0 2 2 2 0 Secretory protein of YscJ/FliF family DUF4250 PF14056.6 gi|307594828|ref|YP_003901145.1| - 0.04 13.9 0.1 0.59 10.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) HGTP_anticodon PF03129.20 gi|307594828|ref|YP_003901145.1| - 0.068 13.3 0.7 0.81 9.9 0.1 2.5 2 0 0 2 2 2 0 Anticodon binding domain DUF2294 PF10057.9 gi|307594829|ref|YP_003901146.1| - 0.19 11.9 2.4 11 6.2 2.4 2.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) Ribosomal_S10 PF00338.22 gi|307594830|ref|YP_003901147.1| - 6.7e-26 90.4 0.0 7.5e-26 90.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|307594830|ref|YP_003901147.1| - 0.009 16.8 0.0 0.02 15.7 0.0 1.5 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain GDPD_2 PF13653.6 gi|307594830|ref|YP_003901147.1| - 0.022 15.2 0.1 7.2 7.2 0.0 2.4 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family GTP_EFTU PF00009.27 gi|307594831|ref|YP_003901148.1| - 6.7e-55 185.6 0.0 1.1e-54 185.0 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|307594831|ref|YP_003901148.1| - 1.7e-36 124.9 0.1 1.1e-35 122.3 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|307594831|ref|YP_003901148.1| - 2.8e-17 62.9 4.4 2.8e-17 62.9 4.4 2.7 2 1 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|307594831|ref|YP_003901148.1| - 1.7e-06 27.9 1.8 1.7e-06 27.9 1.8 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|307594831|ref|YP_003901148.1| - 4.9e-05 23.4 0.0 0.00041 20.4 0.0 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|307594831|ref|YP_003901148.1| - 0.0003 20.4 0.2 0.018 14.6 0.0 3.1 2 1 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|307594831|ref|YP_003901148.1| - 0.016 15.1 0.1 0.32 10.9 0.0 2.3 1 1 1 2 2 2 0 RsgA GTPase PDDEXK_10 PF07788.11 gi|307594831|ref|YP_003901148.1| - 0.082 12.8 0.0 0.54 10.2 0.0 2.4 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Dynamin_N PF00350.23 gi|307594831|ref|YP_003901148.1| - 0.1 12.6 0.2 3.7 7.6 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Septin PF00735.18 gi|307594831|ref|YP_003901148.1| - 0.14 11.4 0.0 0.38 10.0 0.0 1.7 1 1 0 1 1 1 0 Septin COXG PF06240.13 gi|307594832|ref|YP_003901149.1| - 4.2e-35 120.5 0.0 4.7e-35 120.4 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|307594832|ref|YP_003901149.1| - 2.2e-09 37.7 0.0 2.6e-09 37.5 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|307594832|ref|YP_003901149.1| - 0.00023 21.4 0.0 0.00031 20.9 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport MFS_1 PF07690.16 gi|307594833|ref|YP_003901150.1| - 2.1e-10 40.1 44.2 2.1e-10 40.1 44.2 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307594833|ref|YP_003901150.1| - 5.5e-09 35.4 12.6 5.5e-09 35.4 12.6 2.6 1 1 0 2 2 2 1 Sugar (and other) transporter VKOR PF07884.14 gi|307594834|ref|YP_003901151.1| - 0.014 15.6 18.7 0.17 12.1 18.7 1.9 1 1 0 1 1 1 0 Vitamin K epoxide reductase family NCE101 PF11654.8 gi|307594834|ref|YP_003901151.1| - 0.072 12.8 2.5 0.81 9.4 0.1 2.5 2 0 0 2 2 2 0 Non-classical export protein 1 YiaAB PF05360.14 gi|307594834|ref|YP_003901151.1| - 0.5 10.7 10.9 0.28 11.4 1.1 2.4 1 1 1 2 2 2 0 yiaA/B two helix domain MoCF_biosynth PF00994.24 gi|307594835|ref|YP_003901152.1| - 2.3e-33 114.9 0.1 2.7e-33 114.6 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain XdhC_C PF13478.6 gi|307594836|ref|YP_003901153.1| - 3.4e-23 82.5 0.1 4.7e-23 82.1 0.1 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain Fer2_2 PF01799.20 gi|307594837|ref|YP_003901154.1| - 1.8e-32 111.1 1.4 2.5e-32 110.7 0.0 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|307594837|ref|YP_003901154.1| - 2.1e-06 27.6 0.9 4e-06 26.7 0.4 1.7 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|307594837|ref|YP_003901154.1| - 0.00011 22.2 0.1 0.00017 21.5 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_M60_C PF18630.1 gi|307594837|ref|YP_003901154.1| - 0.016 15.3 0.1 0.027 14.6 0.1 1.4 1 0 0 1 1 1 0 Peptidase M60 C-terminal domain FAD_binding_5 PF00941.21 gi|307594838|ref|YP_003901155.1| - 6.3e-52 175.8 0.0 8.6e-52 175.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|307594838|ref|YP_003901155.1| - 9.8e-29 99.6 0.2 1.8e-28 98.7 0.2 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain LPD7 PF18821.1 gi|307594838|ref|YP_003901155.1| - 0.087 13.0 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 7 Ald_Xan_dh_C2 PF02738.18 gi|307594839|ref|YP_003901156.1| - 7.1e-154 513.3 0.0 9.7e-154 512.8 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|307594839|ref|YP_003901156.1| - 7.1e-30 103.6 0.0 1.8e-29 102.3 0.0 1.8 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain tRNA-synt_1 PF00133.22 gi|307594840|ref|YP_003901157.1| - 1.4e-66 225.0 0.0 2.9e-65 220.7 0.0 2.5 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|307594840|ref|YP_003901157.1| - 8.6e-20 71.2 0.3 1.6e-19 70.4 0.3 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|307594840|ref|YP_003901157.1| - 2.2e-18 66.2 0.4 2.6e-10 39.6 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|307594840|ref|YP_003901157.1| - 1.4e-10 41.0 0.1 1.2e-09 37.9 0.0 2.4 2 1 1 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|307594840|ref|YP_003901157.1| - 1.1e-08 34.8 0.0 0.0002 20.8 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|307594840|ref|YP_003901157.1| - 0.02 13.8 0.0 6.6 5.5 0.0 2.7 2 1 1 3 3 3 0 tRNA synthetases class I (K) HetR_C PF18460.1 gi|307594840|ref|YP_003901157.1| - 0.092 12.7 1.3 2.4 8.1 0.1 3.0 3 0 0 3 3 3 0 Heterocyst differentiation regulator C-terminal Hood domain CBS PF00571.28 gi|307594841|ref|YP_003901158.1| - 4.2e-25 88.0 5.1 1.1e-13 51.4 0.4 2.1 2 0 0 2 2 2 2 CBS domain PDDEXK_1 PF12705.7 gi|307594843|ref|YP_003901160.1| - 0.0021 18.0 0.0 0.003 17.5 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exo5 PF09810.9 gi|307594843|ref|YP_003901160.1| - 0.056 12.9 0.0 1.3 8.4 0.0 2.0 1 1 1 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease PK PF00224.21 gi|307594844|ref|YP_003901161.1| - 4.4e-83 279.1 0.1 5.8e-83 278.7 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|307594844|ref|YP_003901161.1| - 1.1e-17 64.4 0.0 6.2e-17 61.9 0.0 2.1 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|307594844|ref|YP_003901161.1| - 0.00043 19.5 0.3 0.0031 16.7 0.1 2.0 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Insulin_TMD PF17870.1 gi|307594846|ref|YP_003901163.1| - 0.0033 17.5 3.4 0.0058 16.7 3.4 1.4 1 0 0 1 1 1 1 Insulin receptor trans-membrane segment BatA PF07584.11 gi|307594846|ref|YP_003901163.1| - 0.0077 16.6 1.6 0.17 12.3 2.0 2.3 1 1 1 2 2 2 1 Aerotolerance regulator N-terminal Adeno_E3_CR2 PF02439.15 gi|307594846|ref|YP_003901163.1| - 0.015 15.1 3.1 0.027 14.2 3.1 1.4 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 Orf78 PF06024.12 gi|307594846|ref|YP_003901163.1| - 0.06 13.7 2.6 0.098 13.0 2.6 1.3 1 0 0 1 1 1 0 Orf78 (ac78) Baculo_11_kDa PF06143.11 gi|307594846|ref|YP_003901163.1| - 0.098 12.2 1.3 0.16 11.6 1.3 1.3 1 0 0 1 1 1 0 Baculovirus 11 kDa family TMEM154 PF15102.6 gi|307594846|ref|YP_003901163.1| - 0.15 12.0 1.4 0.22 11.4 1.4 1.2 1 0 0 1 1 1 0 TMEM154 protein family Otopetrin PF03189.13 gi|307594846|ref|YP_003901163.1| - 0.17 10.7 0.9 0.22 10.3 0.9 1.1 1 0 0 1 1 1 0 Otopetrin DUF2207 PF09972.9 gi|307594846|ref|YP_003901163.1| - 0.19 10.5 2.9 0.24 10.1 2.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF5385 PF17359.2 gi|307594846|ref|YP_003901163.1| - 0.32 10.5 1.5 0.44 10.1 1.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5385) SKG6 PF08693.10 gi|307594846|ref|YP_003901163.1| - 0.67 9.4 8.9 1.9 8.0 8.9 1.7 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Stevor PF17410.2 gi|307594846|ref|YP_003901163.1| - 2 7.9 6.2 2.9 7.3 6.2 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame GTP_EFTU PF00009.27 gi|307594847|ref|YP_003901164.1| - 1.3e-25 90.1 0.6 2.9e-24 85.7 0.6 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|307594847|ref|YP_003901164.1| - 4.2e-17 62.2 0.1 8.1e-17 61.3 0.1 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|307594847|ref|YP_003901164.1| - 3.4e-08 33.7 2.1 7.5e-08 32.7 2.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.9 gi|307594847|ref|YP_003901164.1| - 0.0006 19.6 0.2 0.13 12.0 0.1 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|307594847|ref|YP_003901164.1| - 0.00072 19.6 0.0 0.0016 18.5 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|307594847|ref|YP_003901164.1| - 0.00089 19.2 0.1 0.013 15.4 0.3 2.2 2 0 0 2 2 2 1 RsgA GTPase SRPRB PF09439.10 gi|307594847|ref|YP_003901164.1| - 0.15 11.5 0.0 5.4 6.4 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|307594847|ref|YP_003901164.1| - 0.22 11.6 1.0 0.81 9.7 0.2 2.1 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain PIN_9 PF18477.1 gi|307594848|ref|YP_003901165.1| - 6.6e-16 58.7 0.0 7.7e-16 58.4 0.0 1.0 1 0 0 1 1 1 1 PIN like domain Ammonium_transp PF00909.21 gi|307594849|ref|YP_003901166.1| - 4.1e-90 302.3 30.0 4.8e-90 302.1 30.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family DUF1269 PF06897.12 gi|307594849|ref|YP_003901166.1| - 1.6 9.1 6.4 0.47 10.8 1.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Gln-synt_C PF00120.24 gi|307594850|ref|YP_003901167.1| - 1.6e-98 329.9 0.0 2e-98 329.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|307594850|ref|YP_003901167.1| - 6.5e-12 45.0 1.1 1e-11 44.4 0.3 1.8 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain DUF3662 PF12401.8 gi|307594850|ref|YP_003901167.1| - 0.17 12.3 0.0 8.5 6.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2662) DUF2281 PF10047.9 gi|307594851|ref|YP_003901168.1| - 0.00049 20.7 0.0 0.00085 20.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2281) FlaG PF03646.15 gi|307594851|ref|YP_003901168.1| - 0.017 15.2 0.6 0.032 14.4 0.6 1.4 1 0 0 1 1 1 0 FlaG protein GARS_A PF01071.19 gi|307594851|ref|YP_003901168.1| - 0.018 14.8 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF3164 PF11363.8 gi|307594851|ref|YP_003901168.1| - 0.023 14.3 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3164) DUF2457 PF10446.9 gi|307594851|ref|YP_003901168.1| - 0.23 10.6 2.0 0.25 10.4 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Thioredoxin PF00085.20 gi|307594852|ref|YP_003901169.1| - 7.4e-23 80.5 0.0 8.9e-23 80.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|307594852|ref|YP_003901169.1| - 8e-05 23.0 0.6 0.0053 17.2 0.6 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|307594852|ref|YP_003901169.1| - 0.00063 20.0 0.0 0.42 11.0 0.0 2.3 1 1 1 2 2 2 2 Thioredoxin-like OST3_OST6 PF04756.13 gi|307594852|ref|YP_003901169.1| - 0.0015 18.0 0.0 0.0019 17.6 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family TraF PF13728.6 gi|307594852|ref|YP_003901169.1| - 0.0054 16.6 0.0 0.0075 16.1 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|307594852|ref|YP_003901169.1| - 0.0055 16.7 0.1 0.01 15.8 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 gi|307594852|ref|YP_003901169.1| - 0.06 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_7 PF13899.6 gi|307594852|ref|YP_003901169.1| - 0.11 12.6 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like TatD_DNase PF01026.21 gi|307594853|ref|YP_003901170.1| - 1.1e-21 77.4 0.0 1.3e-21 77.2 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase DUF2016 PF09436.10 gi|307594853|ref|YP_003901170.1| - 0.15 11.9 0.2 0.33 10.8 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2016) PhoU PF01895.19 gi|307594854|ref|YP_003901171.1| - 0.078 13.5 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 PhoU domain RNA_Me_trans PF04252.13 gi|307594854|ref|YP_003901171.1| - 0.09 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase Ribosomal_L34e PF01199.18 gi|307594855|ref|YP_003901172.1| - 7.5e-18 64.6 1.4 9.9e-18 64.2 1.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L34e zf-C4_ClpX PF06689.13 gi|307594855|ref|YP_003901172.1| - 0.023 14.6 0.0 1.7 8.6 0.0 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger zf-P11 PF03854.14 gi|307594855|ref|YP_003901172.1| - 0.04 13.6 1.3 2.1 8.1 0.2 2.2 2 0 0 2 2 2 0 P-11 zinc finger DUF4428 PF14471.6 gi|307594855|ref|YP_003901172.1| - 0.093 12.7 0.1 7.3 6.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) DUF2197 PF09963.9 gi|307594855|ref|YP_003901172.1| - 0.16 12.3 1.4 0.18 12.1 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Zn_ribbon_recom PF13408.6 gi|307594855|ref|YP_003901172.1| - 0.87 10.1 4.8 0.15 12.6 0.9 1.7 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Clathrin-link PF09268.10 gi|307594855|ref|YP_003901172.1| - 1.3 8.4 2.7 2.6 7.5 2.7 1.5 1 0 0 1 1 1 0 Clathrin, heavy-chain linker zf-CCHC_2 PF13696.6 gi|307594855|ref|YP_003901172.1| - 3 7.8 8.6 0.6 10.0 2.2 2.2 2 0 0 2 2 2 0 Zinc knuckle Cytidylate_kin2 PF13189.6 gi|307594856|ref|YP_003901173.1| - 5e-27 95.2 4.9 1.9e-25 90.0 4.9 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|307594856|ref|YP_003901173.1| - 2.2e-16 60.2 4.1 6.6e-08 32.6 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|307594856|ref|YP_003901173.1| - 9.9e-15 55.2 0.5 1.4e-14 54.8 0.5 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|307594856|ref|YP_003901173.1| - 5.2e-12 46.4 0.2 9.9e-12 45.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|307594856|ref|YP_003901173.1| - 3.7e-06 27.2 0.7 1.1e-05 25.6 0.7 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.6 gi|307594856|ref|YP_003901173.1| - 5e-06 26.7 0.7 8.6e-05 22.7 0.3 2.5 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|307594856|ref|YP_003901173.1| - 5.8e-06 26.6 0.9 3e-05 24.3 1.1 1.9 1 1 1 2 2 2 1 AAA domain PRK PF00485.18 gi|307594856|ref|YP_003901173.1| - 2.5e-05 24.1 0.6 0.0033 17.2 0.1 2.2 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|307594856|ref|YP_003901173.1| - 3.9e-05 23.6 0.1 0.019 14.8 0.0 2.3 2 1 0 2 2 2 2 Deoxynucleoside kinase CoaE PF01121.20 gi|307594856|ref|YP_003901173.1| - 9.9e-05 22.1 0.1 0.034 13.8 0.0 2.3 2 0 0 2 2 2 2 Dephospho-CoA kinase AAA_16 PF13191.6 gi|307594856|ref|YP_003901173.1| - 0.00012 22.5 0.1 0.00016 22.1 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307594856|ref|YP_003901173.1| - 0.006 16.9 0.0 0.012 15.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain KTI12 PF08433.10 gi|307594856|ref|YP_003901173.1| - 0.0067 15.9 0.0 0.0095 15.4 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 ADK PF00406.22 gi|307594856|ref|YP_003901173.1| - 0.0067 16.5 0.0 0.015 15.4 0.0 1.7 2 0 0 2 2 2 1 Adenylate kinase Zeta_toxin PF06414.12 gi|307594856|ref|YP_003901173.1| - 0.0077 15.5 0.1 0.017 14.4 0.1 1.8 1 1 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|307594856|ref|YP_003901173.1| - 0.012 16.0 0.0 0.025 15.0 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|307594856|ref|YP_003901173.1| - 0.036 13.7 0.3 3.6 7.2 0.0 2.3 1 1 1 2 2 2 0 Thymidylate kinase APS_kinase PF01583.20 gi|307594856|ref|YP_003901173.1| - 0.056 13.3 0.2 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase EF_assoc_1 PF08355.12 gi|307594856|ref|YP_003901173.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.6 1 1 0 1 1 1 0 EF hand associated TMEM206 PF15122.6 gi|307594858|ref|YP_003901175.1| - 0.062 12.5 1.7 0.068 12.3 1.7 1.2 1 0 0 1 1 1 0 TMEM206 protein family Memo PF01875.17 gi|307594859|ref|YP_003901176.1| - 2.6e-77 259.6 0.0 2.9e-77 259.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|307594859|ref|YP_003901176.1| - 0.0017 17.5 0.0 0.0047 16.0 0.0 1.5 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.20 gi|307594860|ref|YP_003901177.1| - 2.4e-21 76.0 0.0 2.5e-14 53.0 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|307594860|ref|YP_003901177.1| - 0.13 11.8 0.2 0.19 11.3 0.2 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain Enolase_C PF00113.22 gi|307594861|ref|YP_003901178.1| - 3.4e-63 213.7 0.0 5e-63 213.1 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|307594861|ref|YP_003901178.1| - 4.4e-33 114.2 0.0 1e-32 113.1 0.0 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|307594861|ref|YP_003901178.1| - 6.8e-10 38.9 0.0 1.3e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like Hydrolase_3 PF08282.12 gi|307594862|ref|YP_003901179.1| - 7e-10 39.1 0.2 2.6e-08 33.9 0.1 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|307594862|ref|YP_003901179.1| - 5.7e-07 30.0 0.0 8.6e-05 22.9 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|307594862|ref|YP_003901179.1| - 6.8e-07 29.9 0.0 1.5e-06 28.8 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|307594862|ref|YP_003901179.1| - 0.093 12.2 0.1 0.21 11.1 0.1 1.5 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) YmgB PF10798.8 gi|307594862|ref|YP_003901179.1| - 0.11 12.4 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Biofilm development protein YmgB/AriR HSP20 PF00011.21 gi|307594863|ref|YP_003901180.1| - 0.0013 18.8 0.1 0.047 13.8 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|307594863|ref|YP_003901180.1| - 0.04 13.5 0.0 0.075 12.6 0.0 1.5 1 1 0 1 1 1 0 HSP20-like domain found in ArsA Carb_kinase PF01256.17 gi|307594864|ref|YP_003901181.1| - 7e-52 176.3 0.9 9.9e-52 175.8 0.9 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|307594864|ref|YP_003901181.1| - 3e-43 147.7 0.2 8.2e-43 146.2 0.0 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|307594864|ref|YP_003901181.1| - 7.9e-07 28.7 0.4 1.5e-06 27.8 0.4 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|307594864|ref|YP_003901181.1| - 0.0004 19.9 0.0 0.00071 19.0 0.0 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase YwiC PF14256.6 gi|307594866|ref|YP_003901183.1| - 0.0082 16.5 15.0 0.035 14.4 6.6 3.1 2 2 0 2 2 2 2 YwiC-like protein Herpes_LMP1 PF05297.11 gi|307594866|ref|YP_003901183.1| - 5.1 6.2 12.0 9.6 5.3 12.0 1.3 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) FANCI_S2 PF14676.6 gi|307594867|ref|YP_003901184.1| - 0.54 10.6 4.3 6.5 7.0 0.1 2.4 1 1 1 2 2 2 0 FANCI solenoid 2 Baculo_PEP_C PF04513.12 gi|307594867|ref|YP_003901184.1| - 3.2 7.8 23.7 2.5 8.2 20.6 2.0 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus PEPCK_GTP PF00821.18 gi|307594868|ref|YP_003901185.1| - 4.1e-111 371.3 0.0 5.2e-111 370.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|307594868|ref|YP_003901185.1| - 1.3e-63 214.5 0.0 1.8e-63 214.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain HEPN PF05168.14 gi|307594869|ref|YP_003901186.1| - 5e-30 104.1 0.0 5.4e-30 103.9 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|307594870|ref|YP_003901187.1| - 1.9e-09 37.6 0.0 2.2e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|307594870|ref|YP_003901187.1| - 5.2e-07 29.7 0.0 7.9e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|307594870|ref|YP_003901187.1| - 0.0025 17.6 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 MFS_1 PF07690.16 gi|307594872|ref|YP_003901189.1| - 3.7e-27 95.2 72.7 4.3e-17 62.1 31.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307594872|ref|YP_003901189.1| - 1e-05 24.6 17.2 1e-05 24.6 17.2 3.0 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|307594872|ref|YP_003901189.1| - 0.0021 17.0 0.3 0.0021 17.0 0.3 4.8 2 2 3 5 5 5 3 MFS_1 like family ThiF PF00899.21 gi|307594873|ref|YP_003901190.1| - 2e-63 214.0 0.1 2.5e-63 213.7 0.1 1.0 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|307594873|ref|YP_003901190.1| - 0.003 17.6 0.9 0.017 15.2 0.1 2.1 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|307594873|ref|YP_003901190.1| - 0.0055 17.0 1.3 0.02 15.2 1.3 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain HEPN PF05168.14 gi|307594873|ref|YP_003901190.1| - 0.1 12.7 0.1 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 HEPN domain DapB_N PF01113.20 gi|307594873|ref|YP_003901190.1| - 0.17 12.0 0.5 0.87 9.7 0.3 2.1 1 1 1 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Rad50_zn_hook PF04423.14 gi|307594873|ref|YP_003901190.1| - 0.2 11.5 0.2 0.56 10.1 0.2 1.8 1 0 0 1 1 1 0 Rad50 zinc hook motif DHHA1 PF02272.19 gi|307594874|ref|YP_003901191.1| - 0.0034 17.8 0.0 0.011 16.2 0.0 1.8 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|307594874|ref|YP_003901191.1| - 0.0055 16.9 0.0 0.024 14.9 0.0 1.9 1 1 0 1 1 1 1 DHH family UPRTase PF14681.6 gi|307594875|ref|YP_003901192.1| - 3.9e-50 170.2 0.2 4.8e-50 169.9 0.2 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|307594875|ref|YP_003901192.1| - 9.3e-09 35.0 0.7 1.8e-08 34.1 0.7 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain NAD_binding_7 PF13241.6 gi|307594876|ref|YP_003901193.1| - 2.9e-23 82.3 0.0 5e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|307594876|ref|YP_003901193.1| - 1.3e-06 28.6 0.1 2.9e-06 27.5 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|307594876|ref|YP_003901193.1| - 0.00058 19.2 0.0 0.00099 18.5 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.13 gi|307594876|ref|YP_003901193.1| - 0.0014 18.2 0.1 0.0019 17.8 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family PrkA PF06798.12 gi|307594876|ref|YP_003901193.1| - 0.012 15.3 0.2 0.021 14.4 0.1 1.5 1 1 0 1 1 1 0 PrkA serine protein kinase C-terminal domain FAD_binding_2 PF00890.24 gi|307594876|ref|YP_003901193.1| - 0.044 12.9 0.0 0.068 12.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_10 PF13460.6 gi|307594876|ref|YP_003901193.1| - 0.059 13.2 0.0 0.084 12.8 0.0 1.2 1 0 0 1 1 1 0 NAD(P)H-binding DUF4145 PF13643.6 gi|307594876|ref|YP_003901193.1| - 0.15 12.2 1.0 7.3 6.8 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4145) ECH_1 PF00378.20 gi|307594878|ref|YP_003901195.1| - 2e-28 99.4 0.0 2.5e-28 99.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|307594878|ref|YP_003901195.1| - 3e-13 50.0 0.0 4.8e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase CLP_protease PF00574.23 gi|307594878|ref|YP_003901195.1| - 0.02 14.8 0.1 0.047 13.6 0.0 1.6 2 0 0 2 2 2 0 Clp protease Transp_cyt_pur PF02133.15 gi|307594879|ref|YP_003901196.1| - 4.2e-63 213.7 47.1 5.5e-63 213.3 47.1 1.2 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin AA_kinase PF00696.28 gi|307594880|ref|YP_003901197.1| - 1.7e-29 103.2 0.0 3.2e-29 102.2 0.0 1.5 1 1 0 1 1 1 1 Amino acid kinase family Gar1 PF04410.14 gi|307594881|ref|YP_003901198.1| - 0.00021 21.1 0.0 0.00022 21.0 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TF_Zn_Ribbon PF08271.12 gi|307594882|ref|YP_003901199.1| - 8.9e-19 66.7 1.0 1.7e-18 65.9 1.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|307594882|ref|YP_003901199.1| - 3.2e-17 62.4 0.4 1.2e-08 34.8 0.2 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat zf-RRN7 PF11781.8 gi|307594882|ref|YP_003901199.1| - 0.0004 20.0 0.2 0.00076 19.1 0.2 1.5 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Ribosomal_S27e PF01667.17 gi|307594882|ref|YP_003901199.1| - 0.0029 17.3 0.5 0.0055 16.4 0.5 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Cyclin_N PF00134.23 gi|307594882|ref|YP_003901199.1| - 0.0038 17.0 0.8 0.094 12.5 0.1 2.2 1 1 0 2 2 2 1 Cyclin, N-terminal domain zf-ribbon_3 PF13248.6 gi|307594882|ref|YP_003901199.1| - 0.007 15.7 0.4 1.8 8.0 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|307594882|ref|YP_003901199.1| - 0.019 14.9 1.2 0.029 14.4 0.1 1.8 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Trm112p PF03966.16 gi|307594882|ref|YP_003901199.1| - 0.031 14.8 1.6 0.61 10.7 1.6 2.6 1 1 0 1 1 1 0 Trm112p-like protein A2L_zn_ribbon PF08792.10 gi|307594882|ref|YP_003901199.1| - 0.035 13.8 0.7 2.2 8.1 1.0 2.4 1 1 1 2 2 2 0 A2L zinc ribbon domain TFIIB_C_1 PF18542.1 gi|307594882|ref|YP_003901199.1| - 0.48 10.5 4.6 0.43 10.6 0.5 2.6 2 1 0 2 2 2 0 Transcription factor IIB C-terminal module 1 RNA_pol_Rpc34 PF05158.12 gi|307594883|ref|YP_003901200.1| - 2.1e-06 27.4 0.1 0.0015 18.0 0.2 2.2 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit MarR PF01047.22 gi|307594883|ref|YP_003901200.1| - 0.00012 21.9 0.0 0.00022 21.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|307594883|ref|YP_003901200.1| - 0.0028 18.1 0.0 0.005 17.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|307594883|ref|YP_003901200.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.6 1 1 0 1 1 1 0 MarR family UPF0220 PF05255.11 gi|307594883|ref|YP_003901200.1| - 0.072 12.6 0.0 0.087 12.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0220) B-block_TFIIIC PF04182.12 gi|307594883|ref|YP_003901200.1| - 0.077 13.2 0.0 0.16 12.2 0.0 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC DED PF01335.21 gi|307594883|ref|YP_003901200.1| - 0.11 12.8 0.1 0.74 10.2 0.0 2.4 4 0 0 4 4 4 0 Death effector domain LigT_PEase PF02834.16 gi|307594884|ref|YP_003901201.1| - 1.4e-30 105.3 0.0 2.4e-20 72.5 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|307594884|ref|YP_003901201.1| - 5.2e-13 49.2 0.0 6.1e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|307594884|ref|YP_003901201.1| - 1.1e-11 45.0 0.0 2.1e-11 44.1 0.0 1.5 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|307594884|ref|YP_003901201.1| - 0.035 13.6 0.0 0.045 13.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein TRIQK PF15168.6 gi|307594885|ref|YP_003901202.1| - 0.018 14.9 4.7 0.019 14.9 0.1 2.0 1 1 1 2 2 2 0 Triple QxxK/R motif-containing protein family DUF5381 PF17353.2 gi|307594885|ref|YP_003901202.1| - 0.058 13.1 1.6 0.064 13.0 1.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5381) DUF4131 PF13567.6 gi|307594885|ref|YP_003901202.1| - 0.093 12.4 2.5 0.1 12.3 2.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF202 PF02656.15 gi|307594885|ref|YP_003901202.1| - 0.11 12.9 5.3 0.2 12.1 5.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF1129 PF06570.11 gi|307594885|ref|YP_003901202.1| - 0.17 11.3 1.3 0.18 11.2 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2207 PF09972.9 gi|307594885|ref|YP_003901202.1| - 1.3 7.8 2.9 1.3 7.7 2.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FeoB_associated PF12669.7 gi|307594885|ref|YP_003901202.1| - 1.7 9.1 4.6 7.8 7.0 0.2 2.2 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein Phage_integrase PF00589.22 gi|307594887|ref|YP_003901204.1| - 3.3e-09 36.7 0.0 1e-08 35.2 0.0 1.6 1 1 0 1 1 1 1 Phage integrase family NPCBM_assoc PF10633.9 gi|307594888|ref|YP_003901205.1| - 3.4e-14 52.8 0.4 0.00041 20.5 0.0 6.1 6 0 0 6 6 6 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|307594888|ref|YP_003901205.1| - 5.2e-07 29.9 4.5 0.02 15.1 0.0 4.4 4 1 0 4 4 4 2 CARDB Wzt_C PF14524.6 gi|307594888|ref|YP_003901205.1| - 0.0082 16.2 0.0 1.9 8.5 0.0 3.5 4 0 0 4 4 4 1 Wzt C-terminal domain TRAP_beta PF05753.14 gi|307594888|ref|YP_003901205.1| - 0.013 14.9 4.6 18 4.6 0.0 4.4 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) RCR PF12273.8 gi|307594888|ref|YP_003901205.1| - 0.019 15.6 0.6 0.057 14.1 0.6 1.7 1 0 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red DUF11 PF01345.18 gi|307594888|ref|YP_003901205.1| - 0.027 14.8 0.3 0.027 14.8 0.3 4.6 3 2 1 4 4 4 0 Domain of unknown function DUF11 Cadherin-like PF12733.7 gi|307594888|ref|YP_003901205.1| - 0.068 13.7 0.0 0.068 13.7 0.0 3.2 4 0 0 4 4 3 0 Cadherin-like beta sandwich domain DUF5305 PF17231.2 gi|307594888|ref|YP_003901205.1| - 0.11 11.9 0.1 0.11 11.9 0.1 2.7 3 0 0 3 3 3 0 Family of unknown function (DUF5305) N_BRCA1_IG PF16158.5 gi|307594888|ref|YP_003901205.1| - 0.11 13.2 0.0 28 5.5 0.0 3.1 3 0 0 3 3 3 0 Ig-like domain from next to BRCA1 gene DUF4469 PF14734.6 gi|307594888|ref|YP_003901205.1| - 0.15 12.2 1.7 30 4.9 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4469) with IG-like fold NS3_envE PF02723.14 gi|307594888|ref|YP_003901205.1| - 0.21 11.7 5.7 0.58 10.3 5.7 1.7 1 0 0 1 1 1 0 Non-structural protein NS3/Small envelope protein E DUF4834 PF16118.5 gi|307594888|ref|YP_003901205.1| - 0.27 12.2 0.3 0.47 11.5 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) MFS_1 PF07690.16 gi|307594889|ref|YP_003901206.1| - 2.5e-49 168.1 44.4 2.5e-49 168.1 44.4 2.2 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307594889|ref|YP_003901206.1| - 8.7e-13 47.9 9.6 8.7e-13 47.9 9.6 3.7 3 1 1 4 4 4 1 Sugar (and other) transporter UPF0444 PF15475.6 gi|307594889|ref|YP_003901206.1| - 0.035 14.4 2.1 0.15 12.4 2.1 2.1 1 0 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 MFS_3 PF05977.13 gi|307594889|ref|YP_003901206.1| - 0.055 11.9 27.3 0.33 9.3 14.4 2.6 2 1 0 2 2 2 0 Transmembrane secretion effector DUF2243 PF10002.9 gi|307594889|ref|YP_003901206.1| - 2.5 8.2 11.5 0.027 14.6 1.3 3.2 3 1 0 3 3 3 0 Predicted membrane protein (DUF2243) AIRS PF00586.24 gi|307594890|ref|YP_003901207.1| - 3.1e-09 37.4 0.0 5.6e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HTH_27 PF13463.6 gi|307594891|ref|YP_003901208.1| - 0.031 14.7 0.1 3.4 8.2 0.0 2.4 3 0 0 3 3 3 0 Winged helix DNA-binding domain DUF92 PF01940.16 gi|307594892|ref|YP_003901209.1| - 7.4e-57 192.5 5.7 9.4e-57 192.1 5.7 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF92 zf-HIT PF04438.16 gi|307594892|ref|YP_003901209.1| - 0.13 12.1 0.1 0.22 11.4 0.1 1.3 1 0 0 1 1 1 0 HIT zinc finger Elf1 PF05129.13 gi|307594893|ref|YP_003901210.1| - 1.2e-19 70.1 0.0 2e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|307594893|ref|YP_003901210.1| - 0.0015 18.9 0.3 0.0031 17.9 0.3 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|307594893|ref|YP_003901210.1| - 0.0022 18.1 0.4 0.2 11.9 0.0 2.3 2 0 0 2 2 2 1 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|307594893|ref|YP_003901210.1| - 0.033 13.6 5.4 0.22 11.0 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|307594893|ref|YP_003901210.1| - 0.036 13.6 1.9 0.11 12.0 1.9 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|307594893|ref|YP_003901210.1| - 0.056 13.5 0.2 0.093 12.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|307594893|ref|YP_003901210.1| - 0.074 12.9 0.3 0.78 9.7 0.4 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|307594893|ref|YP_003901210.1| - 0.12 12.3 1.4 0.24 11.4 1.4 1.5 1 0 0 1 1 1 0 Nudix N-terminal Auto_anti-p27 PF06677.12 gi|307594893|ref|YP_003901210.1| - 0.13 12.4 1.5 0.25 11.5 1.5 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|307594893|ref|YP_003901210.1| - 0.14 11.9 0.2 0.14 11.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Vps36-NZF-N PF16988.5 gi|307594893|ref|YP_003901210.1| - 0.18 11.3 0.8 0.42 10.0 0.8 1.7 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-C2HC5 PF06221.13 gi|307594893|ref|YP_003901210.1| - 0.31 11.0 1.9 4.1 7.5 0.0 2.3 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type Zn_ribbon_recom PF13408.6 gi|307594893|ref|YP_003901210.1| - 0.4 11.2 2.7 3.2 8.3 2.7 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Rubredoxin PF00301.20 gi|307594893|ref|YP_003901210.1| - 0.46 10.5 0.3 0.46 10.5 0.3 2.3 3 0 0 3 3 3 0 Rubredoxin zf-Mss51 PF13824.6 gi|307594893|ref|YP_003901210.1| - 0.87 9.7 3.0 2.4 8.3 0.4 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.7 gi|307594893|ref|YP_003901210.1| - 1.1 9.3 3.1 5 7.2 3.3 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|307594893|ref|YP_003901210.1| - 1.3 9.2 3.6 2.4 8.3 0.4 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|307594893|ref|YP_003901210.1| - 1.8 8.5 4.3 24 5.0 4.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PcrB PF01884.17 gi|307594894|ref|YP_003901211.1| - 7.9e-59 198.8 0.0 9.3e-59 198.6 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|307594894|ref|YP_003901211.1| - 1.2e-11 44.6 0.0 2.9e-11 43.3 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|307594894|ref|YP_003901211.1| - 2.5e-05 23.3 0.1 5.4e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Dus PF01207.17 gi|307594894|ref|YP_003901211.1| - 0.00014 21.1 0.1 0.00039 19.6 0.0 1.7 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|307594894|ref|YP_003901211.1| - 0.00036 19.9 0.2 0.041 13.2 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|307594894|ref|YP_003901211.1| - 0.00044 19.3 0.0 0.0097 14.9 0.0 2.0 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|307594894|ref|YP_003901211.1| - 0.0026 17.2 0.0 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|307594894|ref|YP_003901211.1| - 0.0091 15.3 0.0 0.021 14.2 0.0 1.6 1 0 0 1 1 1 1 Thiamine monophosphate synthase NanE PF04131.14 gi|307594894|ref|YP_003901211.1| - 0.021 14.0 0.0 0.24 10.5 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|307594894|ref|YP_003901211.1| - 0.036 13.3 0.0 0.05 12.8 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Sec61_beta PF03911.16 gi|307594895|ref|YP_003901212.1| - 2.8e-12 46.5 2.2 3.2e-12 46.3 2.2 1.1 1 0 0 1 1 1 1 Sec61beta family EFF-AFF PF14884.6 gi|307594895|ref|YP_003901212.1| - 0.16 10.1 0.2 0.15 10.2 0.2 1.0 1 0 0 1 1 1 0 Type I membrane glycoproteins cell-cell fusogen zf-ZPR1 PF03367.13 gi|307594896|ref|YP_003901213.1| - 2.4e-32 112.0 0.0 2.7e-32 111.8 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain CpXC PF14353.6 gi|307594896|ref|YP_003901213.1| - 0.15 12.1 0.3 1.7 8.7 0.5 2.1 1 1 1 2 2 2 0 CpXC protein DUF5318 PF17249.2 gi|307594896|ref|YP_003901213.1| - 0.17 11.6 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5318) DUF929 PF06053.11 gi|307594896|ref|YP_003901213.1| - 0.19 11.0 0.0 0.33 10.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF929) Rad50_zn_hook PF04423.14 gi|307594896|ref|YP_003901213.1| - 0.61 10.0 2.0 0.59 10.0 0.3 1.8 2 1 1 3 3 3 0 Rad50 zinc hook motif zinc_ribbon_2 PF13240.6 gi|307594896|ref|YP_003901213.1| - 2.9 7.7 6.0 17 5.3 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PSI_PsaH PF03244.14 gi|307594897|ref|YP_003901214.1| - 0.08 12.4 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 Photosystem I reaction centre subunit VI TraQ PF09679.10 gi|307594897|ref|YP_003901214.1| - 0.2 11.6 3.8 0.28 11.1 3.3 1.7 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) HIT PF01230.23 gi|307594898|ref|YP_003901215.1| - 4.7e-28 97.8 0.4 7.5e-28 97.2 0.4 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|307594898|ref|YP_003901215.1| - 7.9e-17 61.8 0.5 1e-16 61.4 0.5 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|307594898|ref|YP_003901215.1| - 0.0021 17.9 1.0 0.0032 17.3 1.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 PrgI PF12666.7 gi|307594899|ref|YP_003901216.1| - 0.05 14.3 11.4 0.071 13.8 11.0 1.5 1 1 0 1 1 1 0 PrgI family protein Oxidored_q2 PF00420.24 gi|307594899|ref|YP_003901216.1| - 1 9.0 12.5 1.5 8.5 12.5 1.4 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF1700 PF08006.11 gi|307594899|ref|YP_003901216.1| - 5 6.6 13.5 6.2 6.3 13.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) MoeA_N PF03453.17 gi|307594901|ref|YP_003901218.1| - 8.9e-34 116.5 0.3 2.1e-32 112.1 0.1 2.4 2 1 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|307594901|ref|YP_003901218.1| - 1.2e-21 76.9 0.1 2.2e-21 76.0 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|307594901|ref|YP_003901218.1| - 4.6e-07 29.9 0.0 1e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) S4_2 PF13275.6 gi|307594901|ref|YP_003901218.1| - 0.026 14.3 0.0 0.1 12.4 0.0 2.0 1 0 0 1 1 1 0 S4 domain Herpes_teg_N PF04843.12 gi|307594902|ref|YP_003901219.1| - 0.037 13.7 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus tegument protein, N-terminal conserved region Otopetrin PF03189.13 gi|307594903|ref|YP_003901220.1| - 0.0073 15.2 0.7 0.0079 15.1 0.7 1.1 1 0 0 1 1 1 1 Otopetrin RDD PF06271.12 gi|307594903|ref|YP_003901220.1| - 0.03 14.5 1.6 0.046 13.9 1.6 1.2 1 0 0 1 1 1 0 RDD family DPM3 PF08285.11 gi|307594903|ref|YP_003901220.1| - 0.091 13.0 1.1 0.14 12.3 1.1 1.3 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) S_4TM PF18159.1 gi|307594903|ref|YP_003901220.1| - 0.095 12.0 2.7 0.13 11.6 2.7 1.1 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain DUF3278 PF11683.8 gi|307594903|ref|YP_003901220.1| - 0.11 12.6 4.6 0.16 12.1 4.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) Wzy_C PF04932.15 gi|307594903|ref|YP_003901220.1| - 0.14 11.8 1.8 0.16 11.6 1.8 1.2 1 0 0 1 1 1 0 O-Antigen ligase Tmpp129 PF10272.9 gi|307594903|ref|YP_003901220.1| - 0.2 10.9 0.6 0.25 10.6 0.6 1.1 1 0 0 1 1 1 0 Putative transmembrane protein precursor DUF2070 PF09843.9 gi|307594903|ref|YP_003901220.1| - 0.23 9.7 4.7 0.32 9.2 4.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Phtf-FEM1B_bdg PF12129.8 gi|307594903|ref|YP_003901220.1| - 0.79 9.5 9.3 1.6 8.6 6.7 2.0 1 1 1 2 2 2 0 Male germ-cell putative homeodomain transcription factor LAGLIDADG_3 PF14528.6 gi|307594905|ref|YP_003901222.1| - 0.002 18.4 0.2 0.011 16.0 0.1 2.4 2 0 0 2 2 2 1 LAGLIDADG-like domain Med22 PF06179.12 gi|307594905|ref|YP_003901222.1| - 0.009 16.2 0.9 0.031 14.5 0.9 1.9 1 0 0 1 1 1 1 Surfeit locus protein 5 subunit 22 of Mediator complex YdiH PF15930.5 gi|307594905|ref|YP_003901222.1| - 0.07 13.3 0.0 0.45 10.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function Cren7 PF11520.8 gi|307594906|ref|YP_003901223.1| - 3.5e-13 49.3 1.5 4.2e-13 49.0 1.5 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 PIN_3 PF13470.6 gi|307594907|ref|YP_003901224.1| - 0.0062 17.3 0.2 0.01 16.6 0.2 1.5 1 1 0 1 1 1 1 PIN domain Gln-synt_N_2 PF16952.5 gi|307594907|ref|YP_003901224.1| - 0.084 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Glutamine synthetase N-terminal domain PIN_12 PF16289.5 gi|307594907|ref|YP_003901224.1| - 0.17 12.4 3.9 0.1 13.1 2.1 1.7 2 1 0 2 2 2 0 PIN domain PIN PF01850.21 gi|307594907|ref|YP_003901224.1| - 0.18 12.3 2.8 0.1 13.1 0.9 1.7 2 1 0 2 2 2 0 PIN domain Sugar_tr PF00083.24 gi|307594909|ref|YP_003901226.1| - 2.1e-27 96.1 41.5 1e-22 80.7 16.9 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|307594909|ref|YP_003901226.1| - 8.2e-25 87.5 75.4 1.4e-20 73.6 40.9 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Herpes_LAMP2 PF06126.11 gi|307594909|ref|YP_003901226.1| - 0.34 9.5 4.2 3.7 6.1 0.3 2.2 2 0 0 2 2 2 0 Herpesvirus Latent membrane protein 2 ATP1G1_PLM_MAT8 PF02038.16 gi|307594909|ref|YP_003901226.1| - 3.2 7.2 4.4 6.4 6.3 0.4 3.4 3 0 0 3 3 3 0 ATP1G1/PLM/MAT8 family POR PF01558.18 gi|307594910|ref|YP_003901227.1| - 1.1e-33 116.8 0.4 1.2e-33 116.6 0.4 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase IstB_IS21 PF01695.17 gi|307594910|ref|YP_003901227.1| - 0.17 11.6 0.2 0.24 11.1 0.2 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein TPP_enzyme_C PF02775.21 gi|307594911|ref|YP_003901228.1| - 6.2e-22 78.0 1.0 2e-21 76.4 1.0 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|307594911|ref|YP_003901228.1| - 4.7e-14 52.7 0.2 1.3e-13 51.2 0.0 1.8 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|307594911|ref|YP_003901228.1| - 1.7e-10 40.2 12.6 8e-08 31.8 4.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307594911|ref|YP_003901228.1| - 1.6e-09 37.3 13.2 1.6e-05 24.7 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|307594911|ref|YP_003901228.1| - 2e-07 30.8 0.4 0.0032 17.1 0.1 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_6 PF12837.7 gi|307594911|ref|YP_003901228.1| - 6.5e-07 29.2 15.2 3.2e-05 23.8 4.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Transketolase_C PF02780.20 gi|307594911|ref|YP_003901228.1| - 2e-05 24.5 0.7 7e-05 22.7 0.1 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4_21 PF14697.6 gi|307594911|ref|YP_003901228.1| - 2.9e-05 24.1 9.1 6.6e-05 23.0 9.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307594911|ref|YP_003901228.1| - 0.00011 22.2 11.5 0.0033 17.5 2.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307594911|ref|YP_003901228.1| - 0.0003 21.3 11.8 0.026 15.1 13.0 2.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307594911|ref|YP_003901228.1| - 0.0011 19.8 7.3 0.0012 19.7 1.2 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|307594911|ref|YP_003901228.1| - 0.0018 18.4 10.6 0.007 16.5 10.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307594911|ref|YP_003901228.1| - 0.016 16.0 4.3 1.2 9.9 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|307594911|ref|YP_003901228.1| - 1.1 10.0 12.6 0.81 10.3 4.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|307594911|ref|YP_003901228.1| - 2.2 8.9 11.1 0.53 10.9 2.2 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307594911|ref|YP_003901228.1| - 2.7 8.6 13.4 5.4 7.6 3.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CarboxypepD_reg PF13620.6 gi|307594912|ref|YP_003901229.1| - 7.2e-09 35.8 11.0 0.00049 20.3 2.0 5.2 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain SdrD_B PF17210.3 gi|307594912|ref|YP_003901229.1| - 0.0021 18.3 2.1 0.22 11.7 0.7 3.3 3 0 0 3 3 3 1 SdrD B-like domain Big_1 PF02369.16 gi|307594912|ref|YP_003901229.1| - 0.0024 17.9 4.0 0.043 13.8 0.1 3.4 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) SpaA PF17802.1 gi|307594912|ref|YP_003901229.1| - 0.42 11.0 3.9 4.8 7.6 1.4 3.2 2 1 1 3 3 3 0 Prealbumin-like fold domain Myc-LZ PF02344.15 gi|307594913|ref|YP_003901230.1| - 0.039 14.1 9.0 6.7 6.9 1.0 3.6 3 0 0 3 3 3 0 Myc leucine zipper domain RHH_1 PF01402.21 gi|307594915|ref|YP_003901232.1| - 5.7e-05 22.9 0.3 0.0014 18.5 0.0 3.1 4 0 0 4 4 4 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 gi|307594915|ref|YP_003901232.1| - 0.0023 18.7 0.1 0.0037 18.0 0.1 1.4 1 0 0 1 1 1 1 Rv0623-like transcription factor RHH_3 PF12651.7 gi|307594915|ref|YP_003901232.1| - 0.052 13.5 0.4 0.13 12.3 0.1 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix domain GFO_IDH_MocA PF01408.22 gi|307594916|ref|YP_003901233.1| - 2.6e-14 54.1 0.0 4.1e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|307594916|ref|YP_003901233.1| - 5.7e-05 23.3 0.5 0.0069 16.6 0.2 2.4 2 0 0 2 2 2 1 TrkA-N domain F420_oxidored PF03807.17 gi|307594916|ref|YP_003901233.1| - 0.0033 18.0 0.0 0.0066 17.0 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 gi|307594916|ref|YP_003901233.1| - 0.0094 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.19 gi|307594916|ref|YP_003901233.1| - 0.022 15.4 0.1 0.041 14.6 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain ADH_zinc_N PF00107.26 gi|307594916|ref|YP_003901233.1| - 0.042 13.8 0.0 0.5 10.4 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase PDH PF02153.17 gi|307594916|ref|YP_003901233.1| - 0.057 12.4 0.0 0.088 11.8 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|307594916|ref|YP_003901233.1| - 0.077 12.6 0.6 0.23 11.0 0.3 1.8 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|307594916|ref|YP_003901233.1| - 0.095 12.0 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|307594916|ref|YP_003901233.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA MazE_antitoxin PF04014.18 gi|307594918|ref|YP_003901235.1| - 5.4e-05 23.0 0.5 0.016 15.1 0.2 2.4 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin ABC_tran PF00005.27 gi|307594920|ref|YP_003901237.1| - 3.3e-39 134.5 0.0 1.5e-19 70.8 0.0 2.4 2 0 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|307594920|ref|YP_003901237.1| - 4.1e-14 52.1 3.5 1.1e-13 50.8 3.5 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|307594920|ref|YP_003901237.1| - 1.8e-12 47.7 0.2 0.0026 17.6 0.0 4.2 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307594920|ref|YP_003901237.1| - 2.7e-09 36.8 2.4 0.0011 18.4 0.1 3.5 2 2 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.27 gi|307594920|ref|YP_003901237.1| - 3.9e-07 29.6 3.1 3.9e-07 29.6 3.1 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_16 PF13191.6 gi|307594920|ref|YP_003901237.1| - 3.2e-06 27.6 0.1 0.0044 17.4 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|307594920|ref|YP_003901237.1| - 6.7e-06 26.6 0.0 0.046 14.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.6 gi|307594920|ref|YP_003901237.1| - 1.1e-05 25.4 8.1 1.9e-05 24.7 8.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain RuvB_N PF05496.12 gi|307594920|ref|YP_003901237.1| - 9.5e-05 22.2 0.1 0.55 10.0 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain Fer4_6 PF12837.7 gi|307594920|ref|YP_003901237.1| - 0.00012 22.0 12.7 0.0017 18.3 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_33 PF13671.6 gi|307594920|ref|YP_003901237.1| - 0.00014 22.1 0.0 0.17 12.0 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|307594920|ref|YP_003901237.1| - 0.00022 21.5 0.1 0.034 14.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|307594920|ref|YP_003901237.1| - 0.00046 20.0 0.0 0.11 12.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|307594920|ref|YP_003901237.1| - 0.0014 18.4 0.2 0.87 9.2 0.1 3.0 2 1 0 3 3 3 1 AAA ATPase domain RecA PF00154.21 gi|307594920|ref|YP_003901237.1| - 0.0015 18.0 0.0 0.096 12.1 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_18 PF13238.6 gi|307594920|ref|YP_003901237.1| - 0.0022 18.5 0.0 0.53 10.8 0.0 2.9 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|307594920|ref|YP_003901237.1| - 0.0024 17.8 0.0 0.24 11.3 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_14 PF13173.6 gi|307594920|ref|YP_003901237.1| - 0.0031 17.6 0.1 2.9 7.9 0.0 2.9 2 0 0 2 2 2 1 AAA domain Fer4_10 PF13237.6 gi|307594920|ref|YP_003901237.1| - 0.0031 17.6 10.2 0.0067 16.5 10.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain RNA_helicase PF00910.22 gi|307594920|ref|YP_003901237.1| - 0.0046 17.3 0.0 0.41 11.0 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_23 PF13476.6 gi|307594920|ref|YP_003901237.1| - 0.0077 16.8 0.1 5.4 7.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|307594920|ref|YP_003901237.1| - 0.014 15.2 0.0 0.68 9.7 0.0 2.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NB-ARC PF00931.22 gi|307594920|ref|YP_003901237.1| - 0.015 14.5 0.1 1 8.5 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain Fer4_9 PF13187.6 gi|307594920|ref|YP_003901237.1| - 0.015 15.4 7.7 0.037 14.2 7.5 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain TsaE PF02367.17 gi|307594920|ref|YP_003901237.1| - 0.02 14.9 0.0 0.92 9.5 0.0 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Fer4_2 PF12797.7 gi|307594920|ref|YP_003901237.1| - 0.021 14.9 3.6 0.021 14.9 3.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF87 PF01935.17 gi|307594920|ref|YP_003901237.1| - 0.024 14.7 0.3 0.16 12.0 0.0 2.3 3 0 0 3 3 2 0 Helicase HerA, central domain MobB PF03205.14 gi|307594920|ref|YP_003901237.1| - 0.035 14.0 0.1 8.4 6.3 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Fer4_7 PF12838.7 gi|307594920|ref|YP_003901237.1| - 0.038 14.6 2.7 0.038 14.6 2.7 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain ATPase_2 PF01637.18 gi|307594920|ref|YP_003901237.1| - 0.041 13.8 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|307594920|ref|YP_003901237.1| - 0.044 13.9 0.1 9.6 6.3 0.0 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase PRK PF00485.18 gi|307594920|ref|YP_003901237.1| - 0.047 13.4 0.0 1.1 8.9 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Lactococcin PF04369.13 gi|307594920|ref|YP_003901237.1| - 0.054 13.6 0.0 1.3 9.2 0.0 2.3 2 0 0 2 2 2 0 Lactococcin-like family ATP-synt_ab PF00006.25 gi|307594920|ref|YP_003901237.1| - 0.055 13.1 0.0 12 5.5 0.0 3.0 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain Thymidylate_kin PF02223.17 gi|307594920|ref|YP_003901237.1| - 0.063 13.0 0.0 0.75 9.4 0.0 2.3 2 0 0 2 2 2 0 Thymidylate kinase NTPase_1 PF03266.15 gi|307594920|ref|YP_003901237.1| - 0.066 13.1 0.2 3.2 7.7 0.0 3.2 3 0 0 3 3 3 0 NTPase RsgA_GTPase PF03193.16 gi|307594920|ref|YP_003901237.1| - 0.084 12.8 0.0 9.3 6.1 0.0 2.8 3 0 0 3 3 3 0 RsgA GTPase SbcCD_C PF13558.6 gi|307594920|ref|YP_003901237.1| - 0.11 12.8 0.0 5.8 7.2 0.0 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 gi|307594920|ref|YP_003901237.1| - 0.12 12.3 0.0 19 5.1 0.0 2.8 3 0 0 3 3 2 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|307594920|ref|YP_003901237.1| - 0.12 11.6 0.2 14 4.9 0.0 2.7 3 0 0 3 3 3 0 Zeta toxin SRP54 PF00448.22 gi|307594920|ref|YP_003901237.1| - 0.14 11.8 0.1 12 5.5 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|307594920|ref|YP_003901237.1| - 0.15 11.6 0.2 1.1 8.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain Fer4_4 PF12800.7 gi|307594920|ref|YP_003901237.1| - 0.7 10.6 11.3 0.37 11.4 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|307594920|ref|YP_003901237.1| - 1.3 9.6 8.5 5.8 7.5 8.5 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307594920|ref|YP_003901237.1| - 7.5 7.1 8.1 28 5.3 8.1 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain PAP2 PF01569.21 gi|307594921|ref|YP_003901238.1| - 9.1e-18 64.3 3.7 9.1e-18 64.3 3.7 2.2 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|307594921|ref|YP_003901238.1| - 4.1e-06 26.6 13.3 4.1e-06 26.6 13.3 3.2 1 1 1 2 2 2 1 PAP2 superfamily GCD14 PF08704.10 gi|307594922|ref|YP_003901239.1| - 1.5e-34 119.8 0.0 3.2e-34 118.7 0.0 1.5 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|307594922|ref|YP_003901239.1| - 1.7e-09 37.7 0.0 2.3e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|307594922|ref|YP_003901239.1| - 4.2e-08 33.2 0.0 6.8e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|307594922|ref|YP_003901239.1| - 4.8e-06 27.2 0.0 8.7e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|307594922|ref|YP_003901239.1| - 0.00033 21.6 0.0 0.00061 20.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|307594922|ref|YP_003901239.1| - 0.00063 19.3 0.0 0.0011 18.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|307594922|ref|YP_003901239.1| - 0.00084 19.9 0.0 0.0016 19.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|307594922|ref|YP_003901239.1| - 0.01 15.3 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_12 PF08242.12 gi|307594922|ref|YP_003901239.1| - 0.016 15.9 0.0 0.029 15.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain GCD14_N PF14801.6 gi|307594922|ref|YP_003901239.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_3 PF01596.17 gi|307594922|ref|YP_003901239.1| - 0.11 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_32 PF13679.6 gi|307594922|ref|YP_003901239.1| - 0.14 12.1 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CxxCxxCC PF03692.15 gi|307594923|ref|YP_003901240.1| - 1.2e-09 38.8 0.2 1.9e-09 38.1 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF5390 PF17365.2 gi|307594923|ref|YP_003901240.1| - 0.064 13.5 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5390) Rap1-DNA-bind PF09197.10 gi|307594923|ref|YP_003901240.1| - 0.18 12.4 0.0 0.23 12.1 0.0 1.2 1 0 0 1 1 1 0 Rap1, DNA-binding Proteasome PF00227.26 gi|307594924|ref|YP_003901241.1| - 2.2e-61 206.7 0.0 3.9e-61 205.9 0.0 1.3 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|307594924|ref|YP_003901241.1| - 8.4e-10 38.1 0.1 8.4e-10 38.1 0.1 2.6 4 0 0 4 4 4 1 Proteasome subunit A N-terminal signature Methyltransf_11 PF08241.12 gi|307594925|ref|YP_003901242.1| - 4.7e-21 75.2 0.0 8.5e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307594925|ref|YP_003901242.1| - 5.4e-18 65.5 0.0 1.1e-17 64.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307594925|ref|YP_003901242.1| - 5.8e-17 61.9 0.0 8e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|307594925|ref|YP_003901242.1| - 2.9e-15 56.8 0.0 4.7e-15 56.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|307594925|ref|YP_003901242.1| - 1.9e-11 44.1 0.0 3.6e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|307594925|ref|YP_003901242.1| - 1.2e-08 34.6 0.0 1.7e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Nitro_FeMo-Co PF02579.17 gi|307594925|ref|YP_003901242.1| - 8.7e-08 32.4 0.1 2.6e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor NodS PF05401.11 gi|307594925|ref|YP_003901242.1| - 9.2e-08 31.9 0.0 1.4e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|307594925|ref|YP_003901242.1| - 2.3e-06 27.1 0.0 3.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain MTS PF05175.14 gi|307594925|ref|YP_003901242.1| - 4.3e-06 26.4 0.0 6.8e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|307594925|ref|YP_003901242.1| - 1.2e-05 25.3 0.0 4.7e-05 23.3 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase TPMT PF05724.11 gi|307594925|ref|YP_003901242.1| - 5.3e-05 23.0 0.0 0.00039 20.1 0.0 2.0 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 gi|307594925|ref|YP_003901242.1| - 0.0015 18.5 0.0 0.0024 17.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|307594925|ref|YP_003901242.1| - 0.0016 17.6 0.0 0.0021 17.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Pox_MCEL PF03291.16 gi|307594925|ref|YP_003901242.1| - 0.0063 15.7 0.2 0.065 12.3 0.2 2.1 1 1 0 1 1 1 1 mRNA capping enzyme Methyltransf_5 PF01795.19 gi|307594925|ref|YP_003901242.1| - 0.098 12.1 0.0 3.4 7.1 0.0 2.1 2 0 0 2 2 2 0 MraW methylase family MetW PF07021.12 gi|307594925|ref|YP_003901242.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Hydrolase_3 PF08282.12 gi|307594927|ref|YP_003901244.1| - 9.4e-29 100.9 0.2 1.2e-20 74.3 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|307594927|ref|YP_003901244.1| - 8.6e-17 61.5 0.0 1.3e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.16 gi|307594927|ref|YP_003901244.1| - 9.2e-07 28.2 0.0 4.4e-06 26.0 0.0 1.8 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase PF00702.26 gi|307594927|ref|YP_003901244.1| - 0.0012 19.1 0.5 0.69 10.2 0.5 2.6 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|307594927|ref|YP_003901244.1| - 0.01 16.0 0.3 0.073 13.1 0.0 2.3 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|307594927|ref|YP_003901244.1| - 0.021 15.2 0.9 1.4 9.3 0.9 2.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|307594927|ref|YP_003901244.1| - 0.063 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like Radical_SAM PF04055.21 gi|307594929|ref|YP_003901246.1| - 8.7e-17 62.0 0.0 2.6e-16 60.4 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily DUF1957 PF09210.11 gi|307594929|ref|YP_003901246.1| - 0.028 14.8 0.0 0.24 11.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1957) Pribosyltran PF00156.27 gi|307594930|ref|YP_003901247.1| - 2.2e-21 76.0 0.0 3e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Band_7 PF01145.25 gi|307594932|ref|YP_003901249.1| - 6.8e-35 120.7 1.7 8.9e-35 120.3 1.7 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|307594932|ref|YP_003901249.1| - 0.00014 21.7 0.4 0.00038 20.2 0.1 1.9 2 1 0 2 2 2 1 SPFH domain-Band 7 family pPIWI_RE_REase PF18154.1 gi|307594932|ref|YP_003901249.1| - 0.003 17.5 0.6 0.012 15.5 0.2 2.2 1 1 2 3 3 3 1 REase associating with pPIWI_RE Glyco_hydro_80 PF13647.6 gi|307594932|ref|YP_003901249.1| - 0.096 12.2 0.1 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A NfeD PF01957.18 gi|307594933|ref|YP_003901250.1| - 8.2e-10 38.9 1.0 8.2e-10 38.9 1.0 2.2 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|307594933|ref|YP_003901250.1| - 2.7e-07 30.7 0.0 4.3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Clp protease DUF2190 PF09956.9 gi|307594933|ref|YP_003901250.1| - 0.0019 18.6 0.8 0.011 16.2 0.2 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2190) SDH_sah PF01972.16 gi|307594933|ref|YP_003901250.1| - 0.011 14.8 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase DUF1614 PF07758.11 gi|307594934|ref|YP_003901251.1| - 4.5e-39 134.2 15.5 4.5e-39 134.2 15.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) HAD_2 PF13419.6 gi|307594935|ref|YP_003901252.1| - 4.2e-39 134.5 0.0 4.8e-39 134.3 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|307594935|ref|YP_003901252.1| - 1.6e-20 74.3 0.2 4.7e-19 69.5 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|307594935|ref|YP_003901252.1| - 5.9e-11 43.1 0.0 9.7e-11 42.4 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|307594935|ref|YP_003901252.1| - 1.7e-07 31.2 0.0 3.1e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.18 gi|307594935|ref|YP_003901252.1| - 8.9e-07 28.8 0.0 8.9e-06 25.6 0.0 2.0 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.6 gi|307594935|ref|YP_003901252.1| - 3.3e-05 23.9 0.0 0.00039 20.5 0.0 2.5 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|307594935|ref|YP_003901252.1| - 0.00021 21.1 1.4 0.051 13.3 0.1 2.8 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|307594935|ref|YP_003901252.1| - 0.038 13.6 0.0 0.4 10.2 0.0 2.1 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) AcrZ PF10766.9 gi|307594936|ref|YP_003901253.1| - 0.26 10.9 3.7 0.47 10.1 3.7 1.4 1 0 0 1 1 1 0 Multidrug efflux pump-associated protein AcrZ PHP_C PF13263.6 gi|307594937|ref|YP_003901254.1| - 1.7e-14 53.3 0.0 3.2e-14 52.4 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|307594937|ref|YP_003901254.1| - 3.4e-08 33.9 0.0 6.3e-08 33.1 0.0 1.5 1 1 0 1 1 1 1 PHP domain AMMECR1 PF01871.17 gi|307594938|ref|YP_003901255.1| - 4.6e-47 159.7 0.0 5.8e-47 159.4 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 ASFV_J13L PF05568.11 gi|307594939|ref|YP_003901256.1| - 0.0045 16.8 5.5 0.65 9.7 0.0 2.0 2 0 0 2 2 2 2 African swine fever virus J13L protein ATP1G1_PLM_MAT8 PF02038.16 gi|307594939|ref|YP_003901256.1| - 0.15 11.5 4.9 6.9 6.2 2.0 2.3 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family SPC25 PF06703.11 gi|307594939|ref|YP_003901256.1| - 0.2 11.4 4.8 0.29 10.9 1.4 1.9 1 1 1 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Spo7 PF03907.13 gi|307594939|ref|YP_003901256.1| - 0.26 10.7 2.6 0.28 10.6 2.6 1.0 1 0 0 1 1 1 0 Spo7-like protein DHHC PF01529.20 gi|307594939|ref|YP_003901256.1| - 0.4 10.8 2.1 0.44 10.7 2.1 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase TssO PF17561.2 gi|307594939|ref|YP_003901256.1| - 0.44 10.6 6.1 1.8 8.7 0.1 2.0 1 1 1 2 2 2 0 Type VI secretion system, TssO SecG PF03840.14 gi|307594939|ref|YP_003901256.1| - 4.1 7.5 10.6 6.5 6.9 3.3 2.2 2 0 0 2 2 2 0 Preprotein translocase SecG subunit Cob_adeno_trans PF01923.18 gi|307594940|ref|YP_003901257.1| - 6.1e-11 42.7 0.0 1.6e-10 41.4 0.0 1.6 1 1 0 1 1 1 1 Cobalamin adenosyltransferase Prok-RING_4 PF14447.6 gi|307594941|ref|YP_003901258.1| - 0.0012 18.6 4.3 0.017 14.9 2.6 2.5 2 1 0 2 2 2 1 Prokaryotic RING finger family 4 zf_UBZ PF18439.1 gi|307594941|ref|YP_003901258.1| - 0.003 17.1 2.4 0.061 12.9 0.0 3.0 3 0 0 3 3 3 1 Ubiquitin-Binding Zinc Finger zf-C2HC_2 PF13913.6 gi|307594941|ref|YP_003901258.1| - 0.81 9.7 0.1 0.81 9.7 0.1 3.5 4 0 0 4 4 4 0 zinc-finger of a C2HC-type Pyr_redox_2 PF07992.14 gi|307594942|ref|YP_003901259.1| - 2.8e-16 59.6 0.1 3.9e-16 59.1 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SO_alpha_A3 PF17806.1 gi|307594942|ref|YP_003901259.1| - 2e-09 37.7 0.0 6.1e-07 29.7 0.0 2.5 2 0 0 2 2 2 1 Sarcosine oxidase A3 domain FAD_binding_2 PF00890.24 gi|307594942|ref|YP_003901259.1| - 2.9e-07 29.9 1.3 4.1e-07 29.4 0.7 1.5 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|307594942|ref|YP_003901259.1| - 2.5e-06 28.0 2.5 0.01 16.4 0.8 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|307594942|ref|YP_003901259.1| - 1e-05 25.0 1.9 1.3e-05 24.6 0.9 1.6 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|307594942|ref|YP_003901259.1| - 2.6e-05 23.6 0.8 5.3e-05 22.6 0.8 1.4 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.12 gi|307594942|ref|YP_003901259.1| - 6e-05 22.3 0.1 9e-05 21.7 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|307594942|ref|YP_003901259.1| - 0.00012 22.3 0.8 0.00026 21.2 0.8 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|307594942|ref|YP_003901259.1| - 0.00023 20.7 0.1 0.00036 20.0 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|307594942|ref|YP_003901259.1| - 0.0008 19.7 0.2 0.015 15.7 0.2 2.5 1 1 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_3 PF13738.6 gi|307594942|ref|YP_003901259.1| - 0.00094 18.5 0.7 0.081 12.2 1.9 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|307594942|ref|YP_003901259.1| - 0.0062 16.2 1.7 0.01 15.5 1.7 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|307594942|ref|YP_003901259.1| - 0.011 14.8 0.2 0.02 14.0 0.2 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|307594942|ref|YP_003901259.1| - 0.046 13.0 0.3 0.56 9.5 0.3 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|307594942|ref|YP_003901259.1| - 0.05 12.3 0.5 0.075 11.7 0.5 1.2 1 0 0 1 1 1 0 HI0933-like protein DAO PF01266.24 gi|307594943|ref|YP_003901260.1| - 2.4e-61 208.3 0.5 2.8e-61 208.1 0.5 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|307594943|ref|YP_003901260.1| - 5.7e-10 38.9 1.7 3e-09 36.5 1.7 1.8 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|307594943|ref|YP_003901260.1| - 9.4e-09 35.4 0.9 3e-08 33.8 0.7 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|307594943|ref|YP_003901260.1| - 1.5e-06 27.7 0.4 1.7e-05 24.2 0.4 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|307594943|ref|YP_003901260.1| - 3.6e-06 26.5 0.3 0.0066 15.7 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|307594943|ref|YP_003901260.1| - 0.0001 21.6 0.3 0.00055 19.3 0.3 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|307594943|ref|YP_003901260.1| - 0.00014 20.7 0.1 0.019 13.7 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|307594943|ref|YP_003901260.1| - 0.00084 19.9 2.3 0.024 15.2 1.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|307594943|ref|YP_003901260.1| - 0.0011 18.3 0.6 0.0018 17.6 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|307594943|ref|YP_003901260.1| - 0.0028 16.8 1.7 0.043 12.9 0.3 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|307594943|ref|YP_003901260.1| - 0.0066 15.8 0.1 0.012 15.0 0.1 1.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|307594943|ref|YP_003901260.1| - 0.0081 16.1 0.1 0.012 15.5 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|307594943|ref|YP_003901260.1| - 0.036 13.4 0.3 0.12 11.6 0.0 1.8 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase ApbA PF02558.16 gi|307594943|ref|YP_003901260.1| - 0.041 13.5 0.2 0.068 12.8 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|307594943|ref|YP_003901260.1| - 0.047 13.3 1.2 0.081 12.5 1.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|307594943|ref|YP_003901260.1| - 0.076 12.1 0.6 0.21 10.6 0.1 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|307594943|ref|YP_003901260.1| - 0.08 12.9 0.3 0.9 9.5 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|307594943|ref|YP_003901260.1| - 0.087 12.1 0.3 0.15 11.3 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|307594943|ref|YP_003901260.1| - 0.13 12.5 0.1 0.24 11.7 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain MCRA PF06100.11 gi|307594943|ref|YP_003901260.1| - 0.24 10.1 0.1 0.33 9.7 0.1 1.1 1 0 0 1 1 1 0 MCRA family HSP20 PF00011.21 gi|307594944|ref|YP_003901261.1| - 3.9e-09 36.6 0.0 5.1e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|307594944|ref|YP_003901261.1| - 0.0037 16.8 0.1 0.015 14.8 0.1 2.0 1 1 0 1 1 1 1 HSP20-like domain found in ArsA MMR_HSR1 PF01926.23 gi|307594944|ref|YP_003901261.1| - 0.034 14.2 0.0 0.046 13.8 0.0 1.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase GvpH PF05455.11 gi|307594944|ref|YP_003901261.1| - 0.056 13.5 0.1 0.073 13.1 0.1 1.3 1 0 0 1 1 1 0 GvpH PhoU PF01895.19 gi|307594945|ref|YP_003901262.1| - 4.5e-19 68.7 7.1 1.2e-16 61.0 0.4 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|307594945|ref|YP_003901262.1| - 8.9e-11 41.5 0.1 5.6e-10 38.9 0.1 2.3 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin ATP-synt_E_2 PF08112.11 gi|307594945|ref|YP_003901262.1| - 0.017 15.4 0.4 0.061 13.6 0.4 1.9 1 0 0 1 1 1 0 ATP synthase epsilon subunit eIF-1a PF01176.19 gi|307594945|ref|YP_003901262.1| - 0.056 13.3 0.0 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 Glyco_trans_4_5 PF16994.5 gi|307594945|ref|YP_003901262.1| - 0.1 12.2 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Glycosyl-transferase family 4 TOBE PF03459.17 gi|307594945|ref|YP_003901262.1| - 0.11 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 TOBE domain RTA1 PF04479.13 gi|307594945|ref|YP_003901262.1| - 0.21 11.2 0.0 0.37 10.4 0.0 1.3 1 0 0 1 1 1 0 RTA1 like protein MTS PF05175.14 gi|307594946|ref|YP_003901263.1| - 2.3e-10 40.3 0.0 3.1e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|307594946|ref|YP_003901263.1| - 1.2e-06 28.2 0.3 1.5e-06 27.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|307594946|ref|YP_003901263.1| - 0.00079 19.1 0.0 0.0011 18.7 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|307594946|ref|YP_003901263.1| - 0.002 18.8 0.0 0.0031 18.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|307594946|ref|YP_003901263.1| - 0.0036 17.1 0.0 0.0048 16.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|307594946|ref|YP_003901263.1| - 0.0054 16.5 0.0 0.0061 16.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|307594946|ref|YP_003901263.1| - 0.01 15.1 0.0 0.014 14.7 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase UPF0020 PF01170.18 gi|307594946|ref|YP_003901263.1| - 0.018 14.8 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|307594946|ref|YP_003901263.1| - 0.18 11.6 0.0 1.4 8.8 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|307594946|ref|YP_003901263.1| - 0.24 11.4 0.0 0.35 10.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain HTH_5 PF01022.20 gi|307594947|ref|YP_003901264.1| - 3e-05 23.8 0.1 6.5e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|307594947|ref|YP_003901264.1| - 0.0025 17.7 0.0 0.0052 16.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|307594947|ref|YP_003901264.1| - 0.0051 16.7 0.1 0.015 15.3 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|307594947|ref|YP_003901264.1| - 0.0086 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|307594947|ref|YP_003901264.1| - 0.01 16.3 0.2 0.022 15.3 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|307594947|ref|YP_003901264.1| - 0.036 13.8 0.2 0.077 12.7 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|307594947|ref|YP_003901264.1| - 0.083 12.8 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 MarR family Ribosomal_S25 PF03297.15 gi|307594949|ref|YP_003901266.1| - 2e-21 76.1 2.2 2.4e-21 75.8 2.2 1.1 1 0 0 1 1 1 1 S25 ribosomal protein TBP PF00352.21 gi|307594950|ref|YP_003901267.1| - 1.2e-63 211.1 0.0 4.4e-31 106.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|307594950|ref|YP_003901267.1| - 0.00037 20.5 0.0 0.033 14.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Hjc PF01870.18 gi|307594952|ref|YP_003901269.1| - 6.6e-28 96.6 0.0 8.1e-28 96.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|307594952|ref|YP_003901269.1| - 0.0068 16.9 0.0 0.013 16.0 0.0 1.5 1 1 0 1 1 1 1 Nuclease-related domain Lactamase_B_3 PF13483.6 gi|307594954|ref|YP_003901271.1| - 6.3e-27 94.5 0.1 8.1e-27 94.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|307594954|ref|YP_003901271.1| - 8e-27 94.1 0.0 1.1e-26 93.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|307594954|ref|YP_003901271.1| - 1e-07 32.2 0.4 5.1e-07 29.9 0.4 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FAD_binding_3 PF01494.19 gi|307594955|ref|YP_003901272.1| - 5.8e-12 45.5 0.0 7.8e-05 22.1 0.1 3.2 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.24 gi|307594955|ref|YP_003901272.1| - 1.1e-11 45.0 1.7 3.8e-05 23.4 0.0 2.9 1 1 2 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|307594955|ref|YP_003901272.1| - 3.8e-10 39.4 0.1 3.4e-05 23.1 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|307594955|ref|YP_003901272.1| - 9.2e-10 38.4 0.7 0.00047 19.6 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|307594955|ref|YP_003901272.1| - 4.8e-09 35.6 0.0 0.00037 19.5 0.0 2.9 2 1 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.22 gi|307594955|ref|YP_003901272.1| - 6.9e-06 25.4 0.3 1e-05 24.9 0.3 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|307594955|ref|YP_003901272.1| - 8.8e-06 25.1 0.2 2.2e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|307594955|ref|YP_003901272.1| - 2.3e-05 24.6 1.6 3.7e-05 23.9 0.2 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|307594955|ref|YP_003901272.1| - 0.00015 21.0 0.4 0.18 10.8 0.0 3.1 3 0 0 3 3 3 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|307594955|ref|YP_003901272.1| - 0.00019 20.7 0.7 0.00038 19.8 0.4 1.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|307594955|ref|YP_003901272.1| - 0.00033 19.5 0.1 0.00055 18.7 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein ApbA PF02558.16 gi|307594955|ref|YP_003901272.1| - 0.0054 16.4 0.0 0.0088 15.7 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|307594955|ref|YP_003901272.1| - 0.0078 16.1 0.1 0.013 15.4 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|307594955|ref|YP_003901272.1| - 0.079 13.5 0.2 0.36 11.4 0.2 2.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IF-2B PF01008.17 gi|307594956|ref|YP_003901273.1| - 7.2e-78 261.6 0.0 8.8e-78 261.4 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Peptidase_M32 PF02074.15 gi|307594957|ref|YP_003901274.1| - 2.7e-157 524.4 0.0 3.1e-157 524.3 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase 4HB_MCP_1 PF12729.7 gi|307594957|ref|YP_003901274.1| - 0.048 13.2 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction DUF1493 PF07377.12 gi|307594957|ref|YP_003901274.1| - 0.073 13.5 0.0 1.1 9.7 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1493) Mrr_cat PF04471.12 gi|307594958|ref|YP_003901275.1| - 2e-07 31.0 0.3 3e-07 30.4 0.3 1.2 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.17 gi|307594958|ref|YP_003901275.1| - 1.7e-05 24.9 0.2 2.9e-05 24.2 0.2 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NucS PF01939.16 gi|307594958|ref|YP_003901275.1| - 0.00023 20.6 0.3 0.00032 20.1 0.3 1.3 1 0 0 1 1 1 1 Endonuclease NucS DUF4143 PF13635.6 gi|307594958|ref|YP_003901275.1| - 0.0016 18.6 0.1 0.0027 17.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) MlaD PF02470.20 gi|307594958|ref|YP_003901275.1| - 0.016 15.5 0.3 0.026 14.8 0.3 1.4 1 0 0 1 1 1 0 MlaD protein MTES_1575 PF18741.1 gi|307594958|ref|YP_003901275.1| - 0.027 14.6 0.0 0.047 13.9 0.0 1.4 1 0 0 1 1 1 0 REase_MTES_1575 RNase_PH PF01138.21 gi|307594959|ref|YP_003901276.1| - 1.1e-32 113.4 0.0 1.6e-32 112.8 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|307594959|ref|YP_003901276.1| - 1.7e-07 31.2 0.3 1.3e-06 28.3 0.1 2.2 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|307594960|ref|YP_003901277.1| - 7.1e-37 126.9 0.0 1e-36 126.3 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|307594960|ref|YP_003901277.1| - 2.2e-14 53.2 0.0 4.1e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Acetyltransf_1 PF00583.25 gi|307594961|ref|YP_003901278.1| - 2.1e-18 66.7 0.0 2.6e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|307594961|ref|YP_003901278.1| - 5.4e-15 55.5 0.0 6.8e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|307594961|ref|YP_003901278.1| - 1.8e-14 53.9 0.0 2.5e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|307594961|ref|YP_003901278.1| - 9.3e-11 42.1 0.0 1.1e-10 41.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|307594961|ref|YP_003901278.1| - 1.3e-10 41.5 0.1 2.9e-10 40.3 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|307594961|ref|YP_003901278.1| - 8.5e-08 32.1 0.0 1.4e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|307594961|ref|YP_003901278.1| - 3.3e-05 24.6 0.0 4.3e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|307594961|ref|YP_003901278.1| - 0.00057 19.4 0.1 0.0017 17.9 0.1 1.8 1 1 0 1 1 1 1 Putative acetyl-transferase AstA PF04958.12 gi|307594961|ref|YP_003901278.1| - 0.002 16.8 0.4 0.046 12.3 0.1 2.0 1 1 1 2 2 2 1 Arginine N-succinyltransferase beta subunit Acetyltransf_16 PF05301.11 gi|307594961|ref|YP_003901278.1| - 0.0029 17.4 0.0 0.0049 16.7 0.0 1.5 1 1 0 1 1 1 1 GNAT acetyltransferase, Mec-17 Acetyltransf_CG PF14542.6 gi|307594961|ref|YP_003901278.1| - 0.0052 16.9 0.0 0.0087 16.2 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|307594961|ref|YP_003901278.1| - 0.0055 16.3 0.0 0.0083 15.7 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_8 PF13523.6 gi|307594961|ref|YP_003901278.1| - 0.017 14.8 0.0 0.028 14.1 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4821 PF16092.5 gi|307594961|ref|YP_003901278.1| - 0.02 14.5 0.1 0.029 14.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) Acetyltransf_6 PF13480.7 gi|307594961|ref|YP_003901278.1| - 0.079 13.1 0.5 0.25 11.5 0.5 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain MOZ_SAS PF01853.18 gi|307594961|ref|YP_003901278.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.5 1 1 1 2 2 2 0 MOZ/SAS family Glyco_tranf_2_3 PF13641.6 gi|307594963|ref|YP_003901280.1| - 2.9e-23 83.0 0.0 3.7e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|307594963|ref|YP_003901280.1| - 1.5e-19 70.5 0.0 2.5e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|307594963|ref|YP_003901280.1| - 3.2e-17 63.1 3.0 5.9e-17 62.2 3.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|307594963|ref|YP_003901280.1| - 0.00024 20.6 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|307594963|ref|YP_003901280.1| - 0.0091 14.7 0.0 0.0091 14.7 0.0 2.0 2 0 0 2 2 2 1 Chitin synthase UvrA_inter PF17760.1 gi|307594963|ref|YP_003901280.1| - 0.15 12.1 0.1 0.43 10.7 0.1 1.8 1 0 0 1 1 1 0 UvrA interaction domain AAA_21 PF13304.6 gi|307594964|ref|YP_003901281.1| - 3.6e-11 43.4 0.0 0.00014 21.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|307594964|ref|YP_003901281.1| - 5.7e-08 32.9 0.0 3.7e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|307594964|ref|YP_003901281.1| - 3.3e-07 31.0 0.0 4.7e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|307594964|ref|YP_003901281.1| - 5.3e-06 26.1 0.1 9.9e-06 25.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|307594964|ref|YP_003901281.1| - 2.5e-05 23.8 0.0 9e-05 22.0 0.0 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|307594964|ref|YP_003901281.1| - 0.00045 19.6 0.5 0.0009 18.6 0.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) ABC_tran PF00005.27 gi|307594964|ref|YP_003901281.1| - 0.0032 18.0 0.0 0.0059 17.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|307594964|ref|YP_003901281.1| - 0.0043 17.3 0.0 0.092 13.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|307594964|ref|YP_003901281.1| - 0.0053 16.1 0.1 0.014 14.8 0.1 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_30 PF13604.6 gi|307594964|ref|YP_003901281.1| - 0.021 14.5 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|307594964|ref|YP_003901281.1| - 0.025 14.5 0.6 0.051 13.5 0.0 1.7 2 0 0 2 2 2 0 NACHT domain DUF3987 PF13148.6 gi|307594964|ref|YP_003901281.1| - 0.065 12.2 0.0 0.095 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) ATP_bind_1 PF03029.17 gi|307594964|ref|YP_003901281.1| - 0.08 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|307594964|ref|YP_003901281.1| - 0.082 12.8 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|307594964|ref|YP_003901281.1| - 0.086 13.2 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|307594964|ref|YP_003901281.1| - 0.12 12.0 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Pox_A32 PF04665.12 gi|307594964|ref|YP_003901281.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_25 PF13481.6 gi|307594964|ref|YP_003901281.1| - 0.13 11.8 0.0 0.35 10.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|307594964|ref|YP_003901281.1| - 0.15 10.9 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain HIT PF01230.23 gi|307594966|ref|YP_003901283.1| - 3.1e-09 37.5 0.0 4.5e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|307594966|ref|YP_003901283.1| - 5e-08 32.8 0.3 1.9e-07 31.0 0.3 1.8 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|307594966|ref|YP_003901283.1| - 2.2e-07 31.3 0.0 3.5e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding ALS_ss_C PF10369.9 gi|307594967|ref|YP_003901284.1| - 0.14 12.4 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Small subunit of acetolactate synthase Hist_deacetyl PF00850.19 gi|307594968|ref|YP_003901285.1| - 3.8e-74 249.9 0.0 6e-74 249.3 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain DNA_RNApol_7kD PF03604.13 gi|307594969|ref|YP_003901286.1| - 0.0001 21.9 3.6 0.00026 20.6 3.6 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|307594969|ref|YP_003901286.1| - 0.00027 20.8 0.8 0.04 13.9 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|307594969|ref|YP_003901286.1| - 0.0009 19.3 0.1 0.0013 18.8 0.1 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|307594969|ref|YP_003901286.1| - 0.0016 18.4 0.1 0.0018 18.2 0.1 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type zf-C2H2 PF00096.26 gi|307594969|ref|YP_003901286.1| - 0.015 15.8 2.2 2 9.0 0.0 2.4 2 1 0 2 2 2 0 Zinc finger, C2H2 type DZR PF12773.7 gi|307594969|ref|YP_003901286.1| - 0.016 15.2 0.3 0.054 13.5 0.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|307594969|ref|YP_003901286.1| - 0.017 15.1 0.1 0.018 15.1 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TFIIS_C PF01096.18 gi|307594969|ref|YP_003901286.1| - 0.023 14.5 0.7 5.3 7.0 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 gi|307594969|ref|YP_003901286.1| - 0.027 13.9 2.3 0.039 13.4 0.7 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|307594969|ref|YP_003901286.1| - 0.037 14.8 1.6 3.7 8.6 0.0 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf_UBZ PF18439.1 gi|307594969|ref|YP_003901286.1| - 0.058 13.0 0.4 0.8 9.4 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Cys_rich_CPXG PF14255.6 gi|307594969|ref|YP_003901286.1| - 0.073 13.0 0.8 0.095 12.6 0.1 1.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG Ribosomal_L37e PF01907.19 gi|307594969|ref|YP_003901286.1| - 0.076 13.2 1.9 0.33 11.1 1.9 1.9 1 1 0 1 1 1 0 Ribosomal protein L37e zf-CSL PF05207.13 gi|307594969|ref|YP_003901286.1| - 0.078 12.7 1.3 0.26 11.1 1.3 1.8 1 1 0 1 1 1 0 CSL zinc finger DUF2072 PF09845.9 gi|307594969|ref|YP_003901286.1| - 0.082 13.2 0.2 0.094 13.0 0.2 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-UBP PF02148.19 gi|307594969|ref|YP_003901286.1| - 0.084 13.2 0.4 0.16 12.3 0.4 1.7 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zinc_ribbon_2 PF13240.6 gi|307594969|ref|YP_003901286.1| - 0.12 12.1 3.1 0.44 10.3 0.6 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|307594969|ref|YP_003901286.1| - 0.17 11.4 2.7 0.41 10.2 2.7 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding CTP_transf_like PF01467.26 gi|307594970|ref|YP_003901287.1| - 1.7e-11 44.5 0.0 4e-11 43.3 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase-like ATP-sulfurylase PF01747.17 gi|307594970|ref|YP_003901287.1| - 0.023 14.2 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 ATP-sulfurylase 4HBT PF03061.22 gi|307594971|ref|YP_003901288.1| - 4.9e-31 106.9 1.9 1.4e-14 54.2 0.3 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.6 gi|307594971|ref|YP_003901288.1| - 0.00015 22.2 0.0 0.00088 19.8 0.0 2.0 1 1 1 2 2 2 1 Thioesterase-like superfamily DUF2870 PF11069.8 gi|307594971|ref|YP_003901288.1| - 0.076 13.4 0.7 2.5 8.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2870) KH_6 PF15985.5 gi|307594972|ref|YP_003901289.1| - 2e-09 37.6 0.1 3.9e-09 36.7 0.1 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|307594972|ref|YP_003901289.1| - 0.00023 20.9 0.1 0.00068 19.4 0.1 1.8 1 1 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|307594972|ref|YP_003901289.1| - 0.00024 20.9 0.0 0.00066 19.4 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|307594972|ref|YP_003901289.1| - 0.11 12.4 0.1 0.32 10.9 0.1 1.8 1 1 0 1 1 1 0 KH domain SBDS PF01172.18 gi|307594973|ref|YP_003901290.1| - 2.6e-21 75.5 0.0 4e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|307594973|ref|YP_003901290.1| - 2.2e-17 63.1 0.5 3.3e-17 62.6 0.5 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF1949 PF09186.11 gi|307594973|ref|YP_003901290.1| - 0.0045 16.8 0.2 0.028 14.3 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|307594973|ref|YP_003901290.1| - 0.027 14.5 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus KorB PF08535.10 gi|307594973|ref|YP_003901290.1| - 0.076 13.1 0.1 0.23 11.5 0.1 1.8 1 0 0 1 1 1 0 KorB domain ABC2_membrane PF01061.24 gi|307594974|ref|YP_003901291.1| - 0.0036 16.7 26.7 0.0036 16.7 26.7 1.5 1 1 0 1 1 1 1 ABC-2 type transporter YbjM PF11045.8 gi|307594974|ref|YP_003901291.1| - 0.09 12.9 0.8 0.09 12.9 0.8 3.0 2 1 1 3 3 3 0 Putative inner membrane protein of Enterobacteriaceae ABC_tran PF00005.27 gi|307594975|ref|YP_003901292.1| - 2.6e-26 92.8 0.0 3.4e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307594975|ref|YP_003901292.1| - 1.4e-13 51.3 0.0 1.8e-07 31.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|307594975|ref|YP_003901292.1| - 0.0016 18.3 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|307594975|ref|YP_003901292.1| - 0.0038 16.9 0.0 0.0072 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|307594975|ref|YP_003901292.1| - 0.0059 17.1 0.0 0.0089 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|307594975|ref|YP_003901292.1| - 0.0084 16.5 0.0 0.038 14.4 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|307594975|ref|YP_003901292.1| - 0.015 14.8 0.0 4.9 6.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|307594975|ref|YP_003901292.1| - 0.018 15.5 0.0 0.032 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|307594975|ref|YP_003901292.1| - 0.033 14.5 0.0 0.056 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|307594975|ref|YP_003901292.1| - 0.044 13.5 0.1 0.062 13.0 0.1 1.3 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|307594975|ref|YP_003901292.1| - 0.07 13.4 0.0 0.26 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|307594975|ref|YP_003901292.1| - 0.077 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|307594975|ref|YP_003901292.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|307594975|ref|YP_003901292.1| - 0.13 10.8 0.0 0.73 8.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain MukB PF04310.12 gi|307594975|ref|YP_003901292.1| - 0.14 12.0 0.1 0.23 11.2 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal RNA_helicase PF00910.22 gi|307594975|ref|YP_003901292.1| - 0.14 12.6 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|307594975|ref|YP_003901292.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|307594975|ref|YP_003901292.1| - 0.14 12.7 0.0 0.25 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|307594975|ref|YP_003901292.1| - 0.15 12.1 0.0 2.7 8.1 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|307594975|ref|YP_003901292.1| - 0.19 11.9 0.0 0.39 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain S4 PF01479.25 gi|307594976|ref|YP_003901293.1| - 2.2e-16 59.3 0.4 4.2e-16 58.4 0.4 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|307594976|ref|YP_003901293.1| - 0.0023 18.8 1.1 0.0053 17.6 0.8 1.6 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Macro_2 PF14519.6 gi|307594976|ref|YP_003901293.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Macro-like domain FapA PF03961.13 gi|307594977|ref|YP_003901294.1| - 0.0015 17.2 0.4 0.0022 16.7 0.4 1.3 1 0 0 1 1 1 1 Flagellar Assembly Protein A APG17 PF04108.12 gi|307594977|ref|YP_003901294.1| - 0.0046 16.1 6.4 0.005 16.0 5.4 1.6 1 1 1 2 2 2 1 Autophagy protein Apg17 Vac_Fusion PF02346.16 gi|307594977|ref|YP_003901294.1| - 0.011 15.4 1.5 0.064 12.9 0.5 2.4 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 RmuC PF02646.16 gi|307594977|ref|YP_003901294.1| - 0.012 14.8 1.2 0.025 13.7 0.2 1.9 2 1 0 2 2 2 0 RmuC family Apolipoprotein PF01442.18 gi|307594977|ref|YP_003901294.1| - 0.013 15.4 0.3 0.013 15.4 0.3 1.7 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain DUF3552 PF12072.8 gi|307594977|ref|YP_003901294.1| - 0.013 14.9 2.1 0.013 14.9 2.1 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF3552) BAR PF03114.18 gi|307594977|ref|YP_003901294.1| - 0.023 14.4 3.5 0.26 10.9 0.7 2.3 1 1 1 2 2 2 0 BAR domain DUF4795 PF16043.5 gi|307594977|ref|YP_003901294.1| - 0.048 13.3 0.4 0.048 13.3 0.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Exonuc_VII_L PF02601.15 gi|307594977|ref|YP_003901294.1| - 0.049 13.2 0.3 0.062 12.9 0.3 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit TMPIT PF07851.13 gi|307594977|ref|YP_003901294.1| - 0.051 12.8 0.0 0.084 12.1 0.0 1.4 1 0 0 1 1 1 0 TMPIT-like protein Baculo_PEP_C PF04513.12 gi|307594977|ref|YP_003901294.1| - 0.054 13.5 0.0 0.092 12.8 0.0 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus HSBP1 PF06825.12 gi|307594977|ref|YP_003901294.1| - 0.088 12.7 3.5 6.6 6.7 3.2 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 YkyA PF10368.9 gi|307594977|ref|YP_003901294.1| - 0.1 12.3 5.7 0.097 12.3 2.3 2.2 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein DUF5638 PF18688.1 gi|307594977|ref|YP_003901294.1| - 0.14 12.5 0.8 0.37 11.1 0.8 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5638) HJURP_C PF12347.8 gi|307594977|ref|YP_003901294.1| - 0.18 11.8 4.8 2.9 8.0 1.5 3.2 2 1 1 3 3 3 0 Holliday junction regulator protein family C-terminal repeat KxDL PF10241.9 gi|307594977|ref|YP_003901294.1| - 0.19 12.0 1.2 4.5 7.6 0.3 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein Occludin_ELL PF07303.13 gi|307594977|ref|YP_003901294.1| - 0.26 12.0 4.1 0.79 10.5 1.7 2.7 2 1 0 2 2 2 0 Occludin homology domain V_ATPase_I PF01496.19 gi|307594977|ref|YP_003901294.1| - 0.29 9.0 3.1 0.32 8.9 3.1 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ABATE PF07336.11 gi|307594977|ref|YP_003901294.1| - 0.53 10.9 2.1 2.6 8.7 2.1 1.9 1 1 0 1 1 1 0 Putative stress-induced transcription regulator CLZ PF16526.5 gi|307594977|ref|YP_003901294.1| - 0.55 10.6 6.3 0.19 12.1 1.1 2.6 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels RecG_N PF17190.4 gi|307594977|ref|YP_003901294.1| - 0.65 10.8 8.8 0.13 13.0 2.4 2.6 2 1 1 3 3 3 0 RecG N-terminal helical domain DUF16 PF01519.16 gi|307594977|ref|YP_003901294.1| - 5.9 7.4 8.0 1.2 9.7 1.2 2.6 2 2 0 2 2 2 0 Protein of unknown function DUF16 XhlA PF10779.9 gi|307594977|ref|YP_003901294.1| - 6.1 7.1 6.5 0.91 9.8 0.7 2.4 2 1 1 3 3 2 0 Haemolysin XhlA Polbeta PF18765.1 gi|307594978|ref|YP_003901295.1| - 1.1e-08 35.1 0.0 1.3e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|307594978|ref|YP_003901295.1| - 6.9e-06 26.3 0.1 8e-06 26.1 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.9 gi|307594978|ref|YP_003901295.1| - 0.00027 20.8 0.0 0.00036 20.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG HEPN PF05168.14 gi|307594979|ref|YP_003901296.1| - 4.4e-26 91.3 0.1 5.2e-26 91.1 0.1 1.0 1 0 0 1 1 1 1 HEPN domain gag-asp_proteas PF13975.6 gi|307594980|ref|YP_003901297.1| - 4.6e-09 36.7 0.4 6.4e-09 36.2 0.4 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|307594980|ref|YP_003901297.1| - 1.5e-08 35.2 0.2 2.3e-08 34.6 0.2 1.4 1 1 0 1 1 1 1 Aspartyl protease RVP PF00077.20 gi|307594980|ref|YP_003901297.1| - 0.0027 18.0 0.0 0.0043 17.3 0.0 1.6 1 1 0 1 1 1 1 Retroviral aspartyl protease Asp_protease PF09668.10 gi|307594980|ref|YP_003901297.1| - 0.092 12.5 0.2 0.12 12.2 0.2 1.2 1 0 0 1 1 1 0 Aspartyl protease ATPase_2 PF01637.18 gi|307594981|ref|YP_003901298.1| - 8.8e-19 68.3 0.0 1.9e-18 67.3 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|307594981|ref|YP_003901298.1| - 3.2e-12 46.6 0.0 7.5e-05 22.8 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|307594981|ref|YP_003901298.1| - 2.5e-10 41.0 0.0 4.4e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307594981|ref|YP_003901298.1| - 4.7e-07 30.2 0.0 1.6e-06 28.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|307594981|ref|YP_003901298.1| - 0.0018 18.7 0.0 0.0056 17.1 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|307594981|ref|YP_003901298.1| - 0.049 12.8 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) CobA_CobO_BtuR PF02572.15 gi|307594981|ref|YP_003901298.1| - 0.12 12.6 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DUF3782 PF12644.7 gi|307594985|ref|YP_003901302.1| - 3.9e-24 84.6 1.1 3.9e-24 84.6 1.1 5.8 5 2 0 5 5 5 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|307594985|ref|YP_003901302.1| - 7.9e-21 73.8 2.9 1.2e-20 73.2 1.4 2.2 2 0 0 2 2 1 1 PD-(D/E)XK nuclease superfamily Sec34 PF04136.15 gi|307594985|ref|YP_003901302.1| - 2.6e-09 37.1 11.1 0.00046 20.1 0.0 4.7 2 2 4 6 6 6 2 Sec34-like family APG6_N PF17675.1 gi|307594985|ref|YP_003901302.1| - 2.6e-07 31.2 47.6 0.0052 17.3 14.0 4.5 1 1 3 4 4 4 2 Apg6 coiled-coil region DUF948 PF06103.11 gi|307594985|ref|YP_003901302.1| - 9.5e-07 29.0 12.8 0.055 13.7 1.0 4.8 1 1 4 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|307594985|ref|YP_003901302.1| - 4.4e-06 26.7 21.2 0.021 14.9 1.6 4.4 1 1 2 4 4 4 3 Protein of unknown function (DUF1664) YabA PF06156.13 gi|307594985|ref|YP_003901302.1| - 5.8e-06 26.9 32.8 0.0025 18.4 4.3 5.1 1 1 2 4 4 4 2 Initiation control protein YabA KASH_CCD PF14662.6 gi|307594985|ref|YP_003901302.1| - 1.7e-05 24.7 40.8 1.7e-05 24.7 23.1 3.6 2 1 1 3 3 3 2 Coiled-coil region of CCDC155 or KASH EzrA PF06160.12 gi|307594985|ref|YP_003901302.1| - 3.6e-05 22.2 25.7 0.024 12.8 11.4 3.5 1 1 2 3 3 3 3 Septation ring formation regulator, EzrA BLOC1_2 PF10046.9 gi|307594985|ref|YP_003901302.1| - 0.00025 21.3 25.8 0.071 13.4 4.2 5.0 1 1 1 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 SHE3 PF17078.5 gi|307594985|ref|YP_003901302.1| - 0.00041 20.1 15.5 0.00059 19.6 11.1 2.4 2 0 0 2 2 2 1 SWI5-dependent HO expression protein 3 CENP-H PF05837.12 gi|307594985|ref|YP_003901302.1| - 0.00048 20.5 37.4 0.014 15.8 4.1 4.2 2 1 2 4 4 4 2 Centromere protein H (CENP-H) Syntaxin_2 PF14523.6 gi|307594985|ref|YP_003901302.1| - 0.00078 19.8 16.9 0.37 11.2 0.1 3.7 2 1 1 3 3 3 2 Syntaxin-like protein COG6 PF06419.11 gi|307594985|ref|YP_003901302.1| - 0.001 17.4 21.1 0.034 12.4 6.3 3.2 1 1 1 3 3 3 2 Conserved oligomeric complex COG6 Mod_r PF07200.13 gi|307594985|ref|YP_003901302.1| - 0.0011 19.1 34.0 1.6 8.8 8.0 4.9 1 1 5 6 6 6 2 Modifier of rudimentary (Mod(r)) protein Prominin PF05478.11 gi|307594985|ref|YP_003901302.1| - 0.0033 15.5 18.3 0.0031 15.5 10.6 2.2 1 1 0 2 2 2 1 Prominin Cluap1 PF10234.9 gi|307594985|ref|YP_003901302.1| - 0.0047 16.4 27.1 0.42 10.0 7.1 3.3 1 1 1 3 3 3 3 Clusterin-associated protein-1 TFA2_Winged_2 PF18121.1 gi|307594985|ref|YP_003901302.1| - 0.007 16.0 7.0 1.8 8.3 0.1 4.0 3 0 0 3 3 3 1 TFA2 Winged helix domain 2 zf-C4H2 PF10146.9 gi|307594985|ref|YP_003901302.1| - 0.0089 16.4 10.5 0.0089 16.4 10.5 3.1 1 1 2 3 3 3 1 Zinc finger-containing protein Tweety PF04906.13 gi|307594985|ref|YP_003901302.1| - 0.01 14.6 15.9 0.03 13.0 0.9 3.2 1 1 2 3 3 3 2 Tweety Dor1 PF04124.12 gi|307594985|ref|YP_003901302.1| - 0.011 14.5 21.3 0.19 10.4 6.7 3.5 1 1 2 3 3 3 0 Dor1-like family DUF4709 PF15821.5 gi|307594985|ref|YP_003901302.1| - 0.013 15.7 17.6 0.44 10.8 4.0 4.1 2 1 3 5 5 5 0 Domain of unknown function (DUF4709) HALZ PF02183.18 gi|307594985|ref|YP_003901302.1| - 0.014 15.6 24.1 0.093 13.0 0.0 5.9 3 1 1 5 5 5 0 Homeobox associated leucine zipper DUF4407 PF14362.6 gi|307594985|ref|YP_003901302.1| - 0.015 14.7 20.1 0.094 12.1 6.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) ZapB PF06005.12 gi|307594985|ref|YP_003901302.1| - 0.016 15.6 55.2 1.5 9.3 12.6 5.9 2 2 4 6 6 6 0 Cell division protein ZapB NPV_P10 PF05531.12 gi|307594985|ref|YP_003901302.1| - 0.018 15.5 15.4 3.7 8.1 0.9 4.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein TMPIT PF07851.13 gi|307594985|ref|YP_003901302.1| - 0.025 13.8 20.9 1.2 8.3 6.4 3.1 2 1 1 3 3 3 0 TMPIT-like protein Spc7 PF08317.11 gi|307594985|ref|YP_003901302.1| - 0.025 13.4 34.9 0.062 12.2 20.5 2.9 1 1 1 2 2 2 0 Spc7 kinetochore protein SKA2 PF16740.5 gi|307594985|ref|YP_003901302.1| - 0.025 14.3 27.7 2.5 7.9 6.6 5.6 1 1 5 6 6 6 0 Spindle and kinetochore-associated protein 2 GMP_synt_C PF00958.22 gi|307594985|ref|YP_003901302.1| - 0.028 14.4 0.2 13 5.9 0.0 3.7 2 1 1 3 3 3 0 GMP synthase C terminal domain Gly_kinase PF02595.15 gi|307594985|ref|YP_003901302.1| - 0.032 13.2 0.1 1.7 7.5 0.1 2.4 2 0 0 2 2 2 0 Glycerate kinase family IncF PF17626.2 gi|307594985|ref|YP_003901302.1| - 0.042 14.2 0.0 0.093 13.1 0.0 1.6 1 0 0 1 1 1 0 Inclusion membrane protein F HMMR_C PF15908.5 gi|307594985|ref|YP_003901302.1| - 0.061 13.6 24.1 9.5 6.5 0.3 3.5 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor C-terminal HapK PF11639.8 gi|307594985|ref|YP_003901302.1| - 0.064 13.7 0.2 0.38 11.3 0.0 2.3 2 0 0 2 2 2 0 REDY-like protein HapK BAR_3 PF16746.5 gi|307594985|ref|YP_003901302.1| - 0.068 12.9 15.8 0.2 11.4 0.4 3.5 1 1 1 3 3 3 0 BAR domain of APPL family MCPsignal PF00015.21 gi|307594985|ref|YP_003901302.1| - 0.068 13.0 13.7 1.8 8.3 2.2 3.3 1 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain RasGAP_C PF03836.15 gi|307594985|ref|YP_003901302.1| - 0.13 12.5 20.1 0.089 12.9 2.0 3.8 2 2 3 5 5 4 0 RasGAP C-terminus DUF1993 PF09351.10 gi|307594985|ref|YP_003901302.1| - 0.18 11.9 6.9 0.16 12.1 0.5 3.1 2 2 1 3 3 3 0 Domain of unknown function (DUF1993) Seryl_tRNA_N PF02403.22 gi|307594985|ref|YP_003901302.1| - 0.2 11.9 36.1 1 9.6 8.7 4.6 3 1 2 5 5 4 0 Seryl-tRNA synthetase N-terminal domain HOOK PF05622.12 gi|307594985|ref|YP_003901302.1| - 0.21 9.7 34.2 0.17 10.0 3.1 2.8 1 1 2 3 3 3 0 HOOK protein UPF0242 PF06785.11 gi|307594985|ref|YP_003901302.1| - 0.26 11.4 34.1 1.2 9.2 11.8 3.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus TMF_TATA_bd PF12325.8 gi|307594985|ref|YP_003901302.1| - 0.38 11.0 37.0 2.7 8.2 15.1 4.5 2 2 0 3 3 3 0 TATA element modulatory factor 1 TATA binding DUF2935 PF11155.8 gi|307594985|ref|YP_003901302.1| - 0.44 10.9 11.0 36 4.7 5.2 4.0 1 1 2 3 3 2 0 Domain of unknown function (DUF2935) DUF5082 PF16888.5 gi|307594985|ref|YP_003901302.1| - 0.47 10.7 29.5 0.12 12.6 3.9 5.1 2 2 2 5 5 5 0 Domain of unknown function (DUF5082) Fib_alpha PF08702.10 gi|307594985|ref|YP_003901302.1| - 0.48 10.6 23.9 0.42 10.8 0.7 3.5 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family Tektin PF03148.14 gi|307594985|ref|YP_003901302.1| - 0.51 9.0 39.1 0.045 12.5 2.3 4.5 2 1 2 4 4 4 0 Tektin family DUF5315 PF17242.2 gi|307594985|ref|YP_003901302.1| - 0.51 10.2 27.3 0.43 10.4 4.7 7.0 3 2 4 7 7 6 0 Disordered region of unknown function (DUF5315) Snapin_Pallidin PF14712.6 gi|307594985|ref|YP_003901302.1| - 0.64 10.5 32.2 7.5 7.0 1.7 6.7 2 2 5 7 7 7 0 Snapin/Pallidin DUF4201 PF13870.6 gi|307594985|ref|YP_003901302.1| - 0.65 9.7 29.7 0.24 11.1 4.6 4.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4201) Jnk-SapK_ap_N PF09744.9 gi|307594985|ref|YP_003901302.1| - 0.79 9.9 34.0 0.27 11.5 4.7 4.1 1 1 3 4 4 4 0 JNK_SAPK-associated protein-1 V_ATPase_I PF01496.19 gi|307594985|ref|YP_003901302.1| - 0.87 7.4 16.7 0.23 9.3 1.9 2.8 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family HAP1_N PF04849.13 gi|307594985|ref|YP_003901302.1| - 0.88 8.7 39.5 1.1 8.4 8.0 2.4 1 1 1 2 2 2 0 HAP1 N-terminal conserved region TMF_DNA_bd PF12329.8 gi|307594985|ref|YP_003901302.1| - 1.2 9.2 32.6 0.15 12.1 0.3 4.6 3 2 2 5 5 4 0 TATA element modulatory factor 1 DNA binding DUF4795 PF16043.5 gi|307594985|ref|YP_003901302.1| - 1.2 8.7 26.7 3.5 7.2 4.6 3.8 1 1 2 3 3 2 0 Domain of unknown function (DUF4795) Laminin_II PF06009.12 gi|307594985|ref|YP_003901302.1| - 1.2 9.1 25.3 1.1 9.3 4.6 3.6 1 1 1 3 3 3 0 Laminin Domain II DUF16 PF01519.16 gi|307594985|ref|YP_003901302.1| - 1.8 9.1 31.3 0.85 10.1 2.6 5.2 1 1 3 4 4 3 0 Protein of unknown function DUF16 ERM PF00769.19 gi|307594985|ref|YP_003901302.1| - 2.2 8.0 39.0 0.6 9.9 17.6 3.2 2 1 1 3 3 3 0 Ezrin/radixin/moesin family ATG16 PF08614.11 gi|307594985|ref|YP_003901302.1| - 2.4 8.4 32.4 31 4.7 15.3 3.6 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) Laminin_I PF06008.14 gi|307594985|ref|YP_003901302.1| - 2.5 7.7 33.2 9.2 5.9 24.6 3.5 1 1 0 2 2 2 0 Laminin Domain I GAS PF13851.6 gi|307594985|ref|YP_003901302.1| - 2.6 7.4 37.2 1.8 7.8 8.1 3.4 1 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding Occludin_ELL PF07303.13 gi|307594985|ref|YP_003901302.1| - 2.6 8.8 16.6 1.1 10.0 1.7 4.3 2 2 3 5 5 4 0 Occludin homology domain bZIP_1 PF00170.21 gi|307594985|ref|YP_003901302.1| - 2.8 8.1 35.2 1.9 8.6 0.2 5.8 2 1 4 6 6 5 0 bZIP transcription factor AAA_27 PF13514.6 gi|307594985|ref|YP_003901302.1| - 2.9 7.4 11.4 0.38 10.3 0.4 3.6 1 1 4 5 5 5 0 AAA domain DUF4530 PF15039.6 gi|307594985|ref|YP_003901302.1| - 3.1 8.0 26.4 0.17 12.0 2.6 4.0 2 1 1 4 4 3 0 Domain of unknown function (DUF4530) HTH_OrfB_IS605 PF12323.8 gi|307594985|ref|YP_003901302.1| - 3.2 7.3 8.2 2.4 7.7 0.6 3.7 3 1 0 3 3 2 0 Helix-turn-helix domain Cytochrom_C_2 PF01322.20 gi|307594985|ref|YP_003901302.1| - 3.5 8.5 10.6 18 6.2 2.3 4.0 1 1 2 4 4 3 0 Cytochrome C' DUF5347 PF17282.2 gi|307594985|ref|YP_003901302.1| - 5.2 7.4 11.9 14 6.1 0.6 3.8 2 2 2 4 4 4 0 Family of unknown function (DUF5347) PTRF_SDPR PF15237.6 gi|307594985|ref|YP_003901302.1| - 5.2 6.6 24.5 0.042 13.5 3.6 3.6 1 1 2 3 3 2 0 PTRF/SDPR family FlaC_arch PF05377.11 gi|307594985|ref|YP_003901302.1| - 5.6 7.4 29.1 2.6 8.5 0.9 6.5 3 2 2 6 6 6 0 Flagella accessory protein C (FlaC) BRE1 PF08647.11 gi|307594985|ref|YP_003901302.1| - 5.9 7.0 30.2 0.15 12.2 9.1 4.5 2 2 2 4 4 4 0 BRE1 E3 ubiquitin ligase FapA PF03961.13 gi|307594985|ref|YP_003901302.1| - 8.2 4.9 30.2 0.093 11.3 6.3 3.2 1 1 2 3 3 3 0 Flagellar Assembly Protein A JIP_LZII PF16471.5 gi|307594985|ref|YP_003901302.1| - 8.8 6.6 36.2 5.4 7.3 3.4 4.7 2 2 2 4 4 3 0 JNK-interacting protein leucine zipper II CENP-F_leu_zip PF10473.9 gi|307594985|ref|YP_003901302.1| - 8.8 6.3 38.8 12 5.9 17.1 3.7 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF86 PF01934.17 gi|307594986|ref|YP_003901303.1| - 2.1e-12 47.0 0.1 6e-12 45.5 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|307594986|ref|YP_003901303.1| - 7.5e-12 45.2 0.0 1.5e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase ATPase_2 PF01637.18 gi|307594987|ref|YP_003901304.1| - 2.5e-57 194.5 0.0 3.1e-57 194.2 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DAP3 PF10236.9 gi|307594987|ref|YP_003901304.1| - 0.022 13.9 0.0 0.16 11.1 0.0 2.2 2 1 1 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 AAA PF00004.29 gi|307594987|ref|YP_003901304.1| - 0.052 14.0 0.0 0.21 12.0 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|307594987|ref|YP_003901304.1| - 0.09 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|307594987|ref|YP_003901304.1| - 0.097 13.1 0.0 0.18 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 gi|307594987|ref|YP_003901304.1| - 0.16 12.0 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|307594987|ref|YP_003901304.1| - 0.17 12.1 0.0 0.35 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain zf-ribbon_3 PF13248.6 gi|307594990|ref|YP_003901307.1| - 0.052 13.0 0.2 0.079 12.4 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|307594990|ref|YP_003901307.1| - 0.085 13.4 3.9 0.15 12.6 3.9 1.6 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Cbl_N PF02262.16 gi|307594990|ref|YP_003901307.1| - 0.13 12.3 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 CBL proto-oncogene N-terminal domain 1 PaREP1 PF05942.11 gi|307594992|ref|YP_003901309.1| - 2e-31 108.3 1.1 3.5e-31 107.5 0.1 1.7 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family BLI1 PF17324.2 gi|307594992|ref|YP_003901309.1| - 0.037 14.7 0.3 0.074 13.7 0.3 1.4 1 0 0 1 1 1 0 BLOC-1 interactor 1 TrwB_AAD_bind PF10412.9 gi|307594992|ref|YP_003901309.1| - 0.1 11.5 0.1 0.15 10.9 0.1 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Myb_DNA-binding PF00249.31 gi|307594992|ref|YP_003901309.1| - 0.22 11.7 1.7 5.6 7.2 0.2 3.0 2 1 0 2 2 2 0 Myb-like DNA-binding domain Iron_permease PF04120.12 gi|307594992|ref|YP_003901309.1| - 0.27 11.0 0.9 4.5 7.1 0.2 2.1 2 0 0 2 2 2 0 Low affinity iron permease PaREP1 PF05942.11 gi|307594993|ref|YP_003901310.1| - 1.8e-29 102.0 1.3 2.3e-29 101.6 1.3 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Glycos_transf_2 PF00535.26 gi|307594995|ref|YP_003901312.1| - 5.7e-20 71.8 0.0 8.1e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|307594995|ref|YP_003901312.1| - 5.2e-14 52.7 0.0 2e-13 50.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|307594995|ref|YP_003901312.1| - 4.9e-07 29.9 0.0 7e-07 29.4 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|307594995|ref|YP_003901312.1| - 0.0036 16.8 0.0 0.0053 16.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|307594995|ref|YP_003901312.1| - 0.061 13.8 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|307594996|ref|YP_003901313.1| - 1.9e-07 30.8 0.0 3.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594996|ref|YP_003901313.1| - 0.00087 19.7 0.0 0.0017 18.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3880 PF12996.7 gi|307594996|ref|YP_003901313.1| - 0.01 15.9 0.0 0.029 14.4 0.0 1.7 1 0 0 1 1 1 0 DUF based on E. rectale Gene description (DUF3880) Glyco_transf_4 PF13439.6 gi|307594996|ref|YP_003901313.1| - 0.019 15.0 0.2 0.033 14.2 0.2 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|307594996|ref|YP_003901313.1| - 0.031 14.7 0.8 0.051 14.0 0.8 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|307594996|ref|YP_003901313.1| - 0.092 13.2 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|307594997|ref|YP_003901314.1| - 2.8e-14 53.0 0.0 4.5e-14 52.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594997|ref|YP_003901314.1| - 1.6e-05 25.4 0.0 2.4e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|307594997|ref|YP_003901314.1| - 0.0015 18.9 0.0 0.0031 17.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307594997|ref|YP_003901314.1| - 0.028 14.4 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|307594998|ref|YP_003901315.1| - 1.1e-14 54.6 0.0 1.7e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|307594998|ref|YP_003901315.1| - 2.2e-06 27.8 0.0 5.3e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|307594998|ref|YP_003901315.1| - 3.1e-05 24.0 0.1 4.7e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|307594998|ref|YP_003901315.1| - 0.019 14.4 0.1 0.55 9.7 0.1 2.1 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Anp1 PF03452.14 gi|307594998|ref|YP_003901315.1| - 0.15 11.5 0.1 0.24 10.8 0.1 1.2 1 0 0 1 1 1 0 Anp1 Glyco_transf_21 PF13506.6 gi|307594998|ref|YP_003901315.1| - 0.2 11.1 0.0 0.61 9.5 0.0 1.8 2 1 0 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.20 gi|307594999|ref|YP_003901316.1| - 2.3e-21 76.1 0.0 1e-20 74.0 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307594999|ref|YP_003901316.1| - 1.7e-17 64.1 0.1 2.9e-17 63.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307594999|ref|YP_003901316.1| - 2.1e-05 24.6 0.0 5.9e-05 23.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|307594999|ref|YP_003901316.1| - 0.0099 16.2 0.0 0.024 15.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|307594999|ref|YP_003901316.1| - 0.042 14.3 0.0 0.74 10.2 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Epimerase_2 PF02350.19 gi|307594999|ref|YP_003901316.1| - 0.14 10.9 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase YabA PF06156.13 gi|307595000|ref|YP_003901317.1| - 1.5e-08 35.2 25.1 0.059 14.0 3.7 4.9 1 1 5 6 6 6 4 Initiation control protein YabA KASH_CCD PF14662.6 gi|307595000|ref|YP_003901317.1| - 2e-08 34.3 32.0 0.00012 21.9 22.6 2.7 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 or KASH APG6_N PF17675.1 gi|307595000|ref|YP_003901317.1| - 9.6e-08 32.6 46.2 0.056 14.0 6.9 4.5 1 1 3 4 4 4 4 Apg6 coiled-coil region DUF1664 PF07889.12 gi|307595000|ref|YP_003901317.1| - 1.7e-06 28.1 18.1 0.0094 16.0 0.9 4.4 2 1 3 5 5 4 2 Protein of unknown function (DUF1664) Dor1 PF04124.12 gi|307595000|ref|YP_003901317.1| - 2.1e-06 26.6 14.0 0.0011 17.7 3.9 3.9 1 1 2 3 3 3 3 Dor1-like family zf-C4H2 PF10146.9 gi|307595000|ref|YP_003901317.1| - 5.3e-06 26.9 22.3 0.014 15.7 1.9 3.5 1 1 2 3 3 3 2 Zinc finger-containing protein Prominin PF05478.11 gi|307595000|ref|YP_003901317.1| - 8.2e-06 24.1 5.0 2.3e-05 22.6 4.1 1.9 1 1 1 2 2 2 1 Prominin SHE3 PF17078.5 gi|307595000|ref|YP_003901317.1| - 1.7e-05 24.7 16.8 0.00049 19.9 6.1 2.3 1 1 1 2 2 2 2 SWI5-dependent HO expression protein 3 DUF948 PF06103.11 gi|307595000|ref|YP_003901317.1| - 2.3e-05 24.6 7.3 0.36 11.1 0.2 5.1 2 1 3 5 5 5 1 Bacterial protein of unknown function (DUF948) Sec34 PF04136.15 gi|307595000|ref|YP_003901317.1| - 3.1e-05 23.9 10.8 0.23 11.3 0.1 3.8 1 1 1 3 3 3 3 Sec34-like family Syntaxin PF00804.25 gi|307595000|ref|YP_003901317.1| - 5.9e-05 22.8 15.9 0.0042 16.8 1.0 3.6 1 1 3 4 4 4 2 Syntaxin CENP-F_leu_zip PF10473.9 gi|307595000|ref|YP_003901317.1| - 0.00011 22.2 28.7 0.081 12.9 10.1 3.4 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PI3K_P85_iSH2 PF16454.5 gi|307595000|ref|YP_003901317.1| - 0.00011 21.8 20.0 0.058 13.0 5.1 2.9 1 1 1 2 2 2 2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain BLOC1_2 PF10046.9 gi|307595000|ref|YP_003901317.1| - 0.00043 20.5 16.2 0.011 16.0 0.3 4.4 1 1 4 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Snapin_Pallidin PF14712.6 gi|307595000|ref|YP_003901317.1| - 0.00046 20.6 18.5 1.1 9.7 0.2 5.5 1 1 5 6 6 6 1 Snapin/Pallidin SKA2 PF16740.5 gi|307595000|ref|YP_003901317.1| - 0.00053 19.8 13.4 0.61 9.9 0.4 4.5 1 1 2 3 3 3 1 Spindle and kinetochore-associated protein 2 Occludin_ELL PF07303.13 gi|307595000|ref|YP_003901317.1| - 0.00089 19.9 12.1 4.1 8.2 1.1 4.5 1 1 3 4 4 4 0 Occludin homology domain DegS PF05384.11 gi|307595000|ref|YP_003901317.1| - 0.00091 18.8 0.3 0.00091 18.8 0.3 4.3 1 1 1 3 3 3 1 Sensor protein DegS Leu_zip PF15294.6 gi|307595000|ref|YP_003901317.1| - 0.0025 17.4 21.7 0.021 14.4 16.1 3.2 1 1 2 3 3 3 1 Leucine zipper ZapB PF06005.12 gi|307595000|ref|YP_003901317.1| - 0.0032 17.9 52.6 6.6 7.3 9.0 5.6 1 1 3 4 4 4 0 Cell division protein ZapB TMF_DNA_bd PF12329.8 gi|307595000|ref|YP_003901317.1| - 0.0032 17.4 2.7 0.0032 17.4 2.7 4.0 3 1 1 4 4 4 2 TATA element modulatory factor 1 DNA binding LPP PF04728.13 gi|307595000|ref|YP_003901317.1| - 0.0033 17.8 10.1 8.9 6.8 0.3 6.3 2 1 5 8 8 7 0 Lipoprotein leucine-zipper bZIP_1 PF00170.21 gi|307595000|ref|YP_003901317.1| - 0.0034 17.4 25.2 0.58 10.3 0.9 5.7 1 1 6 7 7 7 1 bZIP transcription factor DivIC PF04977.15 gi|307595000|ref|YP_003901317.1| - 0.0035 17.1 38.4 0.68 9.8 3.6 6.4 1 1 4 6 6 6 2 Septum formation initiator DUF724 PF05266.14 gi|307595000|ref|YP_003901317.1| - 0.0044 16.9 20.2 0.12 12.2 10.5 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF724) ERM PF00769.19 gi|307595000|ref|YP_003901317.1| - 0.0046 16.8 32.6 0.34 10.7 7.6 3.1 1 1 2 3 3 3 3 Ezrin/radixin/moesin family BRE1 PF08647.11 gi|307595000|ref|YP_003901317.1| - 0.0048 16.9 24.0 0.11 12.5 5.3 3.6 1 1 3 4 4 4 1 BRE1 E3 ubiquitin ligase DUF4709 PF15821.5 gi|307595000|ref|YP_003901317.1| - 0.0058 16.9 14.2 0.58 10.5 1.3 3.7 1 1 3 4 4 4 2 Domain of unknown function (DUF4709) DUF16 PF01519.16 gi|307595000|ref|YP_003901317.1| - 0.0064 17.0 25.5 1.6 9.2 2.7 4.5 2 1 3 5 5 4 1 Protein of unknown function DUF16 DUF3782 PF12644.7 gi|307595000|ref|YP_003901317.1| - 0.008 16.3 1.4 0.008 16.3 1.4 5.8 1 1 2 4 4 3 1 Protein of unknown function (DUF3782) PTRF_SDPR PF15237.6 gi|307595000|ref|YP_003901317.1| - 0.0082 15.8 17.8 0.27 10.8 5.5 4.1 1 1 3 4 4 4 1 PTRF/SDPR family GIT_CC PF16559.5 gi|307595000|ref|YP_003901317.1| - 0.0098 15.7 26.5 0.64 9.9 0.6 5.7 1 1 5 7 7 7 2 GIT coiled-coil Rho guanine nucleotide exchange factor COG5 PF10392.9 gi|307595000|ref|YP_003901317.1| - 0.01 16.0 8.5 11 6.2 0.1 4.2 1 1 3 4 4 4 0 Golgi transport complex subunit 5 HALZ PF02183.18 gi|307595000|ref|YP_003901317.1| - 0.011 16.0 16.5 0.77 10.0 0.1 6.2 3 2 5 8 8 5 0 Homeobox associated leucine zipper DUF4618 PF15397.6 gi|307595000|ref|YP_003901317.1| - 0.012 15.0 25.9 0.25 10.7 8.8 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) CENP-H PF05837.12 gi|307595000|ref|YP_003901317.1| - 0.015 15.7 28.6 0.17 12.3 4.6 4.2 1 1 2 3 3 3 0 Centromere protein H (CENP-H) HAP1_N PF04849.13 gi|307595000|ref|YP_003901317.1| - 0.016 14.4 30.4 0.5 9.5 10.6 2.8 1 1 1 2 2 2 0 HAP1 N-terminal conserved region Taxilin PF09728.9 gi|307595000|ref|YP_003901317.1| - 0.023 13.9 26.2 0.061 12.5 26.2 1.8 1 1 0 1 1 1 0 Myosin-like coiled-coil protein DUF4201 PF13870.6 gi|307595000|ref|YP_003901317.1| - 0.029 14.1 23.0 1.6 8.4 4.9 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) Laminin_I PF06008.14 gi|307595000|ref|YP_003901317.1| - 0.029 14.1 24.9 1.5 8.5 7.5 2.7 1 1 1 2 2 2 0 Laminin Domain I GAS PF13851.6 gi|307595000|ref|YP_003901317.1| - 0.034 13.5 31.3 0.065 12.6 5.1 3.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding PDDEXK_10 PF07788.11 gi|307595000|ref|YP_003901317.1| - 0.037 14.0 1.4 0.098 12.6 1.4 1.7 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF3708 PF12501.8 gi|307595000|ref|YP_003901317.1| - 0.041 13.7 4.2 16 5.2 0.1 4.4 1 1 3 4 4 4 0 Phosphate ATP-binding cassette transporter FlaC_arch PF05377.11 gi|307595000|ref|YP_003901317.1| - 0.047 14.1 23.0 5 7.6 0.5 6.9 1 1 7 8 8 8 0 Flagella accessory protein C (FlaC) TMPIT PF07851.13 gi|307595000|ref|YP_003901317.1| - 0.049 12.9 18.7 0.5 9.6 0.2 3.0 1 1 2 3 3 3 0 TMPIT-like protein UPF0242 PF06785.11 gi|307595000|ref|YP_003901317.1| - 0.057 13.5 31.4 3.1 7.9 10.5 3.0 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus UPF0449 PF15136.6 gi|307595000|ref|YP_003901317.1| - 0.064 13.7 21.9 1.3 9.5 0.7 4.5 1 1 3 4 4 4 0 Uncharacterised protein family UPF0449 COG6 PF06419.11 gi|307595000|ref|YP_003901317.1| - 0.073 11.3 14.9 0.73 8.0 3.7 3.1 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 DUF4795 PF16043.5 gi|307595000|ref|YP_003901317.1| - 0.073 12.7 17.1 38 3.8 17.3 3.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) MutS_III PF05192.18 gi|307595000|ref|YP_003901317.1| - 0.08 13.2 11.4 0.21 11.8 8.7 2.5 2 1 0 2 2 2 0 MutS domain III RmuC PF02646.16 gi|307595000|ref|YP_003901317.1| - 0.084 12.0 20.4 0.18 10.9 1.7 3.8 1 1 1 3 3 3 0 RmuC family AKNA PF12443.8 gi|307595000|ref|YP_003901317.1| - 0.09 13.4 4.2 7.2 7.3 0.1 3.4 2 1 2 4 4 3 0 AT-hook-containing transcription factor DUF5347 PF17282.2 gi|307595000|ref|YP_003901317.1| - 0.1 12.9 14.3 0.89 9.9 0.9 4.6 2 1 2 4 4 4 0 Family of unknown function (DUF5347) Spc7 PF08317.11 gi|307595000|ref|YP_003901317.1| - 0.14 11.1 28.2 0.59 9.0 15.1 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein Uso1_p115_C PF04871.13 gi|307595000|ref|YP_003901317.1| - 0.15 12.5 19.5 3.6 8.0 2.5 3.6 1 1 2 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region TMF_TATA_bd PF12325.8 gi|307595000|ref|YP_003901317.1| - 0.24 11.6 32.0 2.6 8.3 4.8 4.6 2 1 3 5 5 4 0 TATA element modulatory factor 1 TATA binding TACC_C PF05010.14 gi|307595000|ref|YP_003901317.1| - 0.3 10.9 22.6 0.35 10.6 17.3 2.7 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal RasGAP_C PF03836.15 gi|307595000|ref|YP_003901317.1| - 0.31 11.2 17.9 7.1 6.8 0.6 4.2 1 1 4 5 5 5 0 RasGAP C-terminus Laminin_II PF06009.12 gi|307595000|ref|YP_003901317.1| - 0.34 10.9 21.3 2.4 8.2 7.0 4.5 2 1 3 5 5 5 0 Laminin Domain II Mod_r PF07200.13 gi|307595000|ref|YP_003901317.1| - 0.37 10.9 34.8 0.64 10.1 3.5 4.1 2 1 4 6 6 5 0 Modifier of rudimentary (Mod(r)) protein bZIP_Maf PF03131.17 gi|307595000|ref|YP_003901317.1| - 0.38 11.3 26.3 8.9 6.9 2.1 5.2 1 1 4 5 5 5 0 bZIP Maf transcription factor YscO PF07321.12 gi|307595000|ref|YP_003901317.1| - 0.71 9.8 40.9 4.2 7.3 9.1 4.5 2 1 2 4 4 4 0 Type III secretion protein YscO FapA PF03961.13 gi|307595000|ref|YP_003901317.1| - 0.72 8.4 24.3 1.3 7.6 2.2 3.1 1 1 2 3 3 3 0 Flagellar Assembly Protein A Tweety PF04906.13 gi|307595000|ref|YP_003901317.1| - 0.82 8.3 5.8 1.1 7.9 0.5 2.6 1 1 2 3 3 3 0 Tweety DASH_Dad3 PF08656.10 gi|307595000|ref|YP_003901317.1| - 1.1 9.4 11.6 1.1e+02 3.0 0.0 4.6 2 1 1 3 3 3 0 DASH complex subunit Dad3 TLE_N PF03920.15 gi|307595000|ref|YP_003901317.1| - 1.1 9.3 11.6 10 6.2 0.1 4.4 1 1 3 5 5 5 0 Groucho/TLE N-terminal Q-rich domain DUF2379 PF09543.10 gi|307595000|ref|YP_003901317.1| - 1.1 9.5 8.1 0.54 10.5 0.1 4.0 2 1 2 4 4 3 0 Protein of unknown function (DUF2379) JIP_LZII PF16471.5 gi|307595000|ref|YP_003901317.1| - 1.1 9.4 29.1 3.9 7.7 4.3 5.3 1 1 5 6 6 6 0 JNK-interacting protein leucine zipper II OmpH PF03938.14 gi|307595000|ref|YP_003901317.1| - 1.2 9.5 21.2 0.25 11.7 5.5 2.5 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) ADIP PF11559.8 gi|307595000|ref|YP_003901317.1| - 1.3 9.1 30.9 1.6 8.8 3.0 3.2 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding DUF2353 PF09789.9 gi|307595000|ref|YP_003901317.1| - 1.4 8.2 23.0 4 6.7 23.2 1.6 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Cep57_CLD_2 PF14197.6 gi|307595000|ref|YP_003901317.1| - 1.5 9.0 26.1 0.69 10.1 1.2 4.8 1 1 3 4 4 4 0 Centrosome localisation domain of PPC89 Cbl_N PF02262.16 gi|307595000|ref|YP_003901317.1| - 1.5 8.8 4.0 7.4 6.6 0.1 3.1 1 1 2 3 3 3 0 CBL proto-oncogene N-terminal domain 1 Exonuc_VII_L PF02601.15 gi|307595000|ref|YP_003901317.1| - 1.7 8.2 20.0 1.6 8.3 12.2 2.1 1 1 1 2 2 2 0 Exonuclease VII, large subunit AAA_27 PF13514.6 gi|307595000|ref|YP_003901317.1| - 1.9 8.0 13.9 20 4.7 0.1 4.3 1 1 1 3 3 3 0 AAA domain DUF2019 PF09450.10 gi|307595000|ref|YP_003901317.1| - 3.4 7.7 6.8 24 5.0 0.0 4.8 1 1 3 5 5 5 0 Domain of unknown function (DUF2019) Cytochrom_C_2 PF01322.20 gi|307595000|ref|YP_003901317.1| - 3.4 8.6 14.4 44 5.0 0.2 3.9 1 1 2 3 3 3 0 Cytochrome C' DUF5082 PF16888.5 gi|307595000|ref|YP_003901317.1| - 3.4 7.9 31.9 14 5.9 0.5 5.2 2 1 3 5 5 4 0 Domain of unknown function (DUF5082) Fungal_TACC PF12709.7 gi|307595000|ref|YP_003901317.1| - 3.6 8.1 25.0 1.1 9.8 0.2 5.6 1 1 6 7 7 6 0 Fungal Transforming acidic coiled-coil (TACC) proteins FUSC PF04632.12 gi|307595000|ref|YP_003901317.1| - 4.6 5.6 16.4 15 4.0 15.9 1.9 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF1640 PF07798.11 gi|307595000|ref|YP_003901317.1| - 5.6 7.0 24.1 0.068 13.2 5.4 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1640) DUF2205 PF10224.9 gi|307595000|ref|YP_003901317.1| - 6 6.9 25.8 2.7 8.1 1.1 5.5 1 1 5 6 6 6 0 Short coiled-coil protein Vps54_N PF10475.9 gi|307595000|ref|YP_003901317.1| - 7.2 5.8 7.8 13 4.9 3.1 2.8 1 1 0 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex COG2 PF06148.11 gi|307595000|ref|YP_003901317.1| - 8 6.6 20.9 21 5.2 0.5 5.3 2 1 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 PRKG1_interact PF15898.5 gi|307595000|ref|YP_003901317.1| - 8 7.4 31.6 31 5.6 9.8 3.9 1 1 2 3 3 2 0 cGMP-dependent protein kinase interacting domain NTP_transf_3 PF12804.7 gi|307595001|ref|YP_003901318.1| - 1.5e-16 61.2 0.0 1.8e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|307595001|ref|YP_003901318.1| - 2.8e-07 30.7 0.0 3.1e-07 30.5 0.0 1.2 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|307595001|ref|YP_003901318.1| - 0.0014 18.3 0.0 0.002 17.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|307595001|ref|YP_003901318.1| - 0.0027 17.5 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_N PF04413.16 gi|307595001|ref|YP_003901318.1| - 0.0072 16.0 0.1 0.0097 15.6 0.1 1.2 1 0 0 1 1 1 1 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NTP_transf_3 PF12804.7 gi|307595002|ref|YP_003901319.1| - 1.6e-24 87.0 0.0 2.3e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.16 gi|307595002|ref|YP_003901319.1| - 7.9e-05 21.9 0.6 0.00018 20.8 0.1 1.7 2 0 0 2 2 2 1 Guanylyl transferase CofC like CTP_transf_3 PF02348.19 gi|307595002|ref|YP_003901319.1| - 0.028 14.4 0.0 0.05 13.5 0.0 1.4 1 1 0 1 1 1 0 Cytidylyltransferase Sm_multidrug_ex PF06695.11 gi|307595003|ref|YP_003901320.1| - 0.026 15.2 1.2 0.026 15.2 1.2 2.6 1 1 1 2 2 2 0 Putative small multi-drug export protein DUF5313 PF17240.2 gi|307595003|ref|YP_003901320.1| - 0.11 13.0 0.4 0.11 13.0 0.4 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5313) Hist_deacetyl PF00850.19 gi|307595004|ref|YP_003901321.1| - 6.3e-84 282.1 0.0 1.1e-83 281.2 0.0 1.4 1 1 0 1 1 1 1 Histone deacetylase domain Rab_bind PF16704.5 gi|307595005|ref|YP_003901322.1| - 0.02 14.9 0.2 0.056 13.5 0.0 1.7 2 0 0 2 2 2 0 Rab binding domain GAT PF03127.14 gi|307595005|ref|YP_003901322.1| - 0.046 14.0 1.2 0.69 10.3 1.2 2.0 1 1 0 1 1 1 0 GAT domain DUF3073 PF11273.8 gi|307595005|ref|YP_003901322.1| - 0.11 13.2 0.3 0.18 12.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) FbpA PF05833.11 gi|307595006|ref|YP_003901323.1| - 1.5e-37 129.4 0.1 2e-37 129.0 0.1 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|307595006|ref|YP_003901323.1| - 7.6e-26 90.9 0.0 1.4e-25 90.0 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain Prefoldin_2 PF01920.20 gi|307595006|ref|YP_003901323.1| - 5.7e-05 23.0 1.4 0.029 14.3 0.1 2.6 2 0 0 2 2 2 1 Prefoldin subunit FlaC_arch PF05377.11 gi|307595006|ref|YP_003901323.1| - 0.0016 18.8 6.7 0.11 12.9 1.2 2.8 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) Apolipoprotein PF01442.18 gi|307595006|ref|YP_003901323.1| - 0.0024 17.8 1.2 0.0084 16.0 1.2 1.8 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain TPR_MLP1_2 PF07926.12 gi|307595006|ref|YP_003901323.1| - 0.0025 17.8 3.2 0.92 9.6 0.0 2.3 2 0 0 2 2 2 2 TPR/MLP1/MLP2-like protein DUF2205 PF10224.9 gi|307595006|ref|YP_003901323.1| - 0.0062 16.5 5.8 0.027 14.5 0.9 2.6 2 1 1 3 3 3 1 Short coiled-coil protein CENP-F_leu_zip PF10473.9 gi|307595006|ref|YP_003901323.1| - 0.014 15.4 7.1 0.9 9.6 2.1 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NFACT-R_2 PF18297.1 gi|307595006|ref|YP_003901323.1| - 0.019 15.2 0.0 0.046 13.9 0.0 1.6 1 0 0 1 1 1 0 NFACT protein RNA binding domain Tektin PF03148.14 gi|307595006|ref|YP_003901323.1| - 0.028 13.2 3.7 0.34 9.6 0.1 2.2 2 0 0 2 2 2 0 Tektin family Apo-CIII PF05778.12 gi|307595006|ref|YP_003901323.1| - 0.037 13.6 0.2 0.28 10.8 0.1 2.4 2 0 0 2 2 2 0 Apolipoprotein CIII (Apo-CIII) ZapB PF06005.12 gi|307595006|ref|YP_003901323.1| - 0.038 14.4 0.7 0.038 14.4 0.7 2.4 2 1 0 2 2 2 0 Cell division protein ZapB DUF2203 PF09969.9 gi|307595006|ref|YP_003901323.1| - 0.044 14.5 1.1 10 6.9 0.1 2.7 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DHR10 PF18595.1 gi|307595006|ref|YP_003901323.1| - 0.064 13.3 8.2 0.39 10.8 2.1 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain DUF812 PF05667.11 gi|307595006|ref|YP_003901323.1| - 0.068 12.1 1.4 6.1 5.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF812) CASP_C PF08172.12 gi|307595006|ref|YP_003901323.1| - 0.096 12.0 2.5 0.18 11.1 2.5 1.3 1 0 0 1 1 1 0 CASP C terminal BLOC1_2 PF10046.9 gi|307595006|ref|YP_003901323.1| - 0.1 12.9 2.4 8.1 6.8 0.2 2.5 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4140 PF13600.6 gi|307595006|ref|YP_003901323.1| - 0.11 13.0 1.3 1.5 9.3 0.2 2.6 3 0 0 3 3 2 0 N-terminal domain of unknown function (DUF4140) PspA_IM30 PF04012.12 gi|307595006|ref|YP_003901323.1| - 0.11 12.1 3.0 0.38 10.3 0.4 2.2 2 0 0 2 2 2 0 PspA/IM30 family CENP-Q PF13094.6 gi|307595006|ref|YP_003901323.1| - 0.12 12.5 2.1 0.13 12.5 0.2 1.8 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit ADIP PF11559.8 gi|307595006|ref|YP_003901323.1| - 0.15 12.1 1.6 6.8 6.8 0.4 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding XhlA PF10779.9 gi|307595006|ref|YP_003901323.1| - 0.25 11.6 4.2 1.3 9.3 1.0 2.8 2 0 0 2 2 2 0 Haemolysin XhlA Prefoldin PF02996.17 gi|307595006|ref|YP_003901323.1| - 0.28 11.1 2.8 5.1 7.0 0.7 2.4 2 0 0 2 2 2 0 Prefoldin subunit HalX PF08663.10 gi|307595006|ref|YP_003901323.1| - 0.28 11.5 8.2 0.39 11.1 1.2 2.9 3 0 0 3 3 2 0 HalX domain GrpE PF01025.19 gi|307595006|ref|YP_003901323.1| - 0.39 10.4 5.9 1.1 8.9 0.7 2.6 2 0 0 2 2 2 0 GrpE ATG16 PF08614.11 gi|307595006|ref|YP_003901323.1| - 0.4 10.9 6.0 1.4 9.1 1.4 2.2 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) CENP-H PF05837.12 gi|307595006|ref|YP_003901323.1| - 0.42 11.0 4.2 5.1 7.6 0.1 2.3 2 0 0 2 2 2 0 Centromere protein H (CENP-H) PI3K_P85_iSH2 PF16454.5 gi|307595006|ref|YP_003901323.1| - 0.44 10.1 6.1 27 4.3 6.1 2.2 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Tropomyosin_1 PF12718.7 gi|307595006|ref|YP_003901323.1| - 0.45 10.7 4.9 0.43 10.7 0.6 2.1 2 0 0 2 2 2 0 Tropomyosin like Tup_N PF08581.10 gi|307595006|ref|YP_003901323.1| - 0.5 10.7 5.5 8.5 6.8 0.1 2.8 3 0 0 3 3 2 0 Tup N-terminal MerR-DNA-bind PF09278.11 gi|307595006|ref|YP_003901323.1| - 0.53 10.8 3.1 14 6.3 0.1 2.4 2 0 0 2 2 2 0 MerR, DNA binding CLZ PF16526.5 gi|307595006|ref|YP_003901323.1| - 0.67 10.4 3.7 1.9 8.9 0.8 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Ax_dynein_light PF10211.9 gi|307595006|ref|YP_003901323.1| - 1.2 9.1 6.6 3.2 7.7 1.5 2.2 2 0 0 2 2 2 0 Axonemal dynein light chain DivIC PF04977.15 gi|307595006|ref|YP_003901323.1| - 1.3 8.8 4.4 4 7.3 2.2 2.5 2 0 0 2 2 2 0 Septum formation initiator DUF3584 PF12128.8 gi|307595006|ref|YP_003901323.1| - 2 5.8 5.1 0.49 7.8 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) DUF4164 PF13747.6 gi|307595006|ref|YP_003901323.1| - 2.2 8.6 7.3 12 6.2 1.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) TMF_DNA_bd PF12329.8 gi|307595006|ref|YP_003901323.1| - 2.4 8.2 6.9 20 5.3 3.5 2.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding SHE3 PF17078.5 gi|307595006|ref|YP_003901323.1| - 2.6 7.7 5.7 6.9 6.3 0.3 2.2 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 DUF1664 PF07889.12 gi|307595006|ref|YP_003901323.1| - 2.7 8.0 4.0 80 3.3 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) MAP65_ASE1 PF03999.12 gi|307595006|ref|YP_003901323.1| - 3.1 6.4 5.1 7.3 5.2 5.1 1.5 1 1 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) APG6_N PF17675.1 gi|307595006|ref|YP_003901323.1| - 4.7 7.8 10.6 9.9 6.7 2.2 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4200 PF13863.6 gi|307595006|ref|YP_003901323.1| - 6.8 7.1 9.5 8.9 6.7 2.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Mut7-C PF01927.16 gi|307595007|ref|YP_003901324.1| - 1.1e-27 96.9 0.0 1.3e-27 96.7 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain MqsA_antitoxin PF15731.5 gi|307595007|ref|YP_003901324.1| - 0.0068 16.5 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA DNA_ligase_ZBD PF03119.16 gi|307595007|ref|YP_003901324.1| - 0.012 15.7 0.2 0.028 14.4 0.2 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain ADK_lid PF05191.14 gi|307595007|ref|YP_003901324.1| - 0.025 14.6 0.3 8.2 6.5 0.1 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid SAM_2 PF07647.17 gi|307595007|ref|YP_003901324.1| - 0.098 12.8 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) TF_Zn_Ribbon PF08271.12 gi|307595007|ref|YP_003901324.1| - 0.11 12.0 1.2 0.92 9.1 1.2 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding zf_CopZ PF18423.1 gi|307595007|ref|YP_003901324.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Zinc binding domain DUF35_N PF12172.8 gi|307595007|ref|YP_003901324.1| - 1.1 9.2 3.6 24 5.0 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) AMMECR1 PF01871.17 gi|307595008|ref|YP_003901325.1| - 3.2e-20 72.4 0.0 4.1e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 AMMECR1 Thioredoxin_3 PF13192.6 gi|307595009|ref|YP_003901326.1| - 0.0022 18.0 0.0 0.0022 18.0 0.0 2.3 3 0 0 3 3 3 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|307595009|ref|YP_003901326.1| - 0.033 14.4 0.0 0.051 13.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin Ribosomal_L35Ae PF01247.18 gi|307595010|ref|YP_003901327.1| - 2.2e-06 27.8 0.0 3.5e-06 27.1 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L35Ae LGFP PF08310.11 gi|307595010|ref|YP_003901327.1| - 0.044 14.3 0.1 0.078 13.5 0.1 1.4 1 0 0 1 1 1 0 LGFP repeat V_ATPase_I PF01496.19 gi|307595011|ref|YP_003901328.1| - 3.6e-23 81.5 19.9 1.8e-17 62.6 0.2 4.5 5 1 0 5 5 5 2 V-type ATPase 116kDa subunit family Tup_N PF08581.10 gi|307595011|ref|YP_003901328.1| - 0.016 15.5 0.4 4.2 7.7 0.1 3.6 3 0 0 3 3 3 0 Tup N-terminal CCDC144C PF14915.6 gi|307595011|ref|YP_003901328.1| - 0.024 13.8 0.1 0.34 10.0 0.0 2.1 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region DUF2730 PF10805.8 gi|307595011|ref|YP_003901328.1| - 0.025 14.7 0.1 0.93 9.6 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2730) MnmE_helical PF12631.7 gi|307595011|ref|YP_003901328.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.7 1 1 0 1 1 1 0 MnmE helical domain Baculo_PEP_C PF04513.12 gi|307595011|ref|YP_003901328.1| - 0.054 13.5 0.1 1.9 8.6 0.0 2.6 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spectrin_like PF18373.1 gi|307595011|ref|YP_003901328.1| - 0.069 13.2 0.1 2.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Spectrin like domain Vac_Fusion PF02346.16 gi|307595011|ref|YP_003901328.1| - 0.074 12.7 0.8 25 4.6 0.1 3.5 3 0 0 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 DUF2156 PF09924.9 gi|307595011|ref|YP_003901328.1| - 0.16 11.0 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) Lebercilin PF15619.6 gi|307595011|ref|YP_003901328.1| - 0.17 11.5 0.3 1.9 8.1 0.0 2.3 3 0 0 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease HalX PF08663.10 gi|307595011|ref|YP_003901328.1| - 0.19 12.1 3.7 14 6.1 0.4 3.5 3 0 0 3 3 3 0 HalX domain Laminin_I PF06008.14 gi|307595011|ref|YP_003901328.1| - 0.24 11.1 0.0 44 3.7 0.0 2.9 3 0 0 3 3 3 0 Laminin Domain I DUF5063 PF16702.5 gi|307595011|ref|YP_003901328.1| - 0.88 9.9 2.6 5.6 7.3 0.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF5063) CBS PF00571.28 gi|307595012|ref|YP_003901329.1| - 7.3e-32 109.6 10.1 2.3e-17 63.1 1.7 2.3 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|307595012|ref|YP_003901329.1| - 0.012 15.8 3.1 1.3 9.3 0.1 3.2 1 1 2 4 4 4 0 Translation initiation factor IF-3, N-terminal domain Orthopox_F6 PF06601.12 gi|307595012|ref|YP_003901329.1| - 0.021 14.9 0.1 0.059 13.5 0.1 1.8 1 0 0 1 1 1 0 Orthopoxvirus F6 protein DUF3659 PF12396.8 gi|307595012|ref|YP_003901329.1| - 0.024 14.6 0.7 3.5 7.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Translat_reg PF01818.17 gi|307595012|ref|YP_003901329.1| - 0.036 14.1 0.5 0.2 11.6 0.1 2.0 1 1 1 2 2 2 0 Bacteriophage translational regulator DUF2117 PF09890.9 gi|307595012|ref|YP_003901329.1| - 0.037 13.5 3.7 0.046 13.2 3.2 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2117) Acetyltransf_10 PF13673.7 gi|307595012|ref|YP_003901329.1| - 0.045 13.7 0.1 0.35 10.8 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain sCache_3_2 PF17203.4 gi|307595012|ref|YP_003901329.1| - 0.066 13.3 0.5 0.18 12.0 0.5 1.8 1 1 0 1 1 1 0 Single cache domain 3 Lys_export PF03956.13 gi|307595013|ref|YP_003901330.1| - 1.2e-44 152.1 18.3 1.2e-44 152.1 18.3 2.0 2 0 0 2 2 2 2 Lysine exporter LysO Rad51 PF08423.11 gi|307595014|ref|YP_003901331.1| - 1.3e-72 244.1 0.1 1.6e-72 243.8 0.1 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|307595014|ref|YP_003901331.1| - 5.8e-10 39.6 0.1 1.7e-09 38.1 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|307595014|ref|YP_003901331.1| - 1.1e-09 38.1 0.0 1.7e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|307595014|ref|YP_003901331.1| - 1.6e-07 31.1 0.0 2.6e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF4332 PF14229.6 gi|307595014|ref|YP_003901331.1| - 0.00017 21.8 0.1 0.00087 19.5 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) HHH PF00633.23 gi|307595014|ref|YP_003901331.1| - 0.00095 18.9 0.1 0.0052 16.6 0.1 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_24 PF13479.6 gi|307595014|ref|YP_003901331.1| - 0.0048 16.6 0.0 0.0091 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdd1 PF11731.8 gi|307595014|ref|YP_003901331.1| - 0.02 15.1 0.0 0.041 14.1 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus AAA_18 PF13238.6 gi|307595014|ref|YP_003901331.1| - 0.028 14.9 0.1 0.13 12.8 0.1 2.1 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|307595014|ref|YP_003901331.1| - 0.08 13.5 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Sigma70_r3 PF04539.16 gi|307595014|ref|YP_003901331.1| - 0.096 12.8 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 IMS_HHH PF11798.8 gi|307595014|ref|YP_003901331.1| - 0.096 13.1 0.2 0.23 11.9 0.2 1.7 1 0 0 1 1 1 0 IMS family HHH motif TGS PF02824.21 gi|307595015|ref|YP_003901332.1| - 9e-18 64.1 0.0 1.8e-17 63.1 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|307595015|ref|YP_003901332.1| - 3.2e-16 59.3 1.1 5.9e-16 58.4 1.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|307595015|ref|YP_003901332.1| - 9.5e-10 38.6 0.0 3.8e-09 36.6 0.0 2.0 1 1 1 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|307595015|ref|YP_003901332.1| - 2.6e-05 23.8 0.4 0.00013 21.5 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|307595015|ref|YP_003901332.1| - 0.00011 21.8 0.1 1.6 8.2 0.0 3.2 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.13 gi|307595015|ref|YP_003901332.1| - 0.00052 20.2 0.1 0.022 14.9 0.1 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF933) Roc PF08477.13 gi|307595015|ref|YP_003901332.1| - 0.00084 19.5 0.0 0.0078 16.4 0.0 2.3 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_28 PF13521.6 gi|307595015|ref|YP_003901332.1| - 0.0023 18.2 0.0 0.071 13.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain Dynamin_N PF00350.23 gi|307595015|ref|YP_003901332.1| - 0.0033 17.5 0.1 0.047 13.7 0.0 2.3 2 0 0 2 2 2 1 Dynamin family Ras PF00071.22 gi|307595015|ref|YP_003901332.1| - 0.0082 15.7 0.0 3.4 7.2 0.1 2.3 2 0 0 2 2 2 2 Ras family AAA_21 PF13304.6 gi|307595015|ref|YP_003901332.1| - 0.025 14.4 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|307595015|ref|YP_003901332.1| - 0.04 14.4 0.1 0.24 11.9 0.0 2.1 1 1 1 2 2 2 0 ABC transporter AAA_16 PF13191.6 gi|307595015|ref|YP_003901332.1| - 0.041 14.2 0.0 0.094 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|307595015|ref|YP_003901332.1| - 0.052 13.1 0.4 2.4 7.7 0.5 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|307595015|ref|YP_003901332.1| - 0.12 12.3 0.7 13 5.6 0.1 2.7 2 1 0 2 2 2 0 RsgA GTPase AAA_29 PF13555.6 gi|307595015|ref|YP_003901332.1| - 0.17 11.7 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T3SchapCesA PF11439.8 gi|307595016|ref|YP_003901333.1| - 0.047 13.8 0.9 0.27 11.4 0.0 2.3 1 1 1 2 2 2 0 Type III secretion system filament chaperone CesA DHR10 PF18595.1 gi|307595016|ref|YP_003901333.1| - 0.25 11.4 3.6 0.15 12.1 0.9 1.9 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain YmgB PF10798.8 gi|307595016|ref|YP_003901333.1| - 0.5 10.2 4.2 1.2 9.0 0.3 2.8 3 0 0 3 3 3 0 Biofilm development protein YmgB/AriR AAA PF00004.29 gi|307595017|ref|YP_003901334.1| - 1.2e-17 64.5 0.0 5.2e-17 62.5 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|307595017|ref|YP_003901334.1| - 1.1e-14 54.6 0.0 7.6e-11 42.1 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|307595017|ref|YP_003901334.1| - 1.1e-13 51.4 0.0 2.5e-13 50.2 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain RuvB_N PF05496.12 gi|307595017|ref|YP_003901334.1| - 6.9e-08 32.4 0.0 2e-07 30.9 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|307595017|ref|YP_003901334.1| - 1.5e-07 31.8 0.1 0.0098 16.2 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|307595017|ref|YP_003901334.1| - 3.6e-07 30.3 0.0 7e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|307595017|ref|YP_003901334.1| - 1.8e-06 28.2 0.0 5.2e-06 26.7 0.0 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_16 PF13191.6 gi|307595017|ref|YP_003901334.1| - 2.5e-06 28.0 0.0 0.0046 17.4 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain Mg_chelatase PF01078.21 gi|307595017|ref|YP_003901334.1| - 1.5e-05 24.4 0.0 0.00038 19.9 0.0 2.2 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|307595017|ref|YP_003901334.1| - 5.8e-05 23.1 0.1 0.00022 21.2 0.0 2.0 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|307595017|ref|YP_003901334.1| - 5.9e-05 22.7 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|307595017|ref|YP_003901334.1| - 6.7e-05 22.9 0.0 0.00018 21.5 0.0 1.8 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_3 PF07726.11 gi|307595017|ref|YP_003901334.1| - 6.9e-05 22.7 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|307595017|ref|YP_003901334.1| - 0.00013 21.8 0.0 0.00036 20.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|307595017|ref|YP_003901334.1| - 0.00016 21.2 0.0 0.056 12.9 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein IstB_IS21 PF01695.17 gi|307595017|ref|YP_003901334.1| - 0.00025 20.8 0.0 0.00048 19.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|307595017|ref|YP_003901334.1| - 0.00028 20.7 0.1 0.0012 18.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|307595017|ref|YP_003901334.1| - 0.00041 20.4 0.0 0.0067 16.4 0.0 2.0 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|307595017|ref|YP_003901334.1| - 0.00045 20.8 0.0 0.0027 18.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|307595017|ref|YP_003901334.1| - 0.0015 17.8 0.0 0.0023 17.2 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_11 PF13086.6 gi|307595017|ref|YP_003901334.1| - 0.0041 17.0 0.0 0.018 14.9 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|307595017|ref|YP_003901334.1| - 0.006 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region MCM PF00493.23 gi|307595017|ref|YP_003901334.1| - 0.012 14.8 0.0 0.024 13.8 0.0 1.5 1 0 0 1 1 1 0 MCM P-loop domain AAA_19 PF13245.6 gi|307595017|ref|YP_003901334.1| - 0.013 15.8 0.2 0.21 11.9 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|307595017|ref|YP_003901334.1| - 0.014 15.5 0.0 0.035 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|307595017|ref|YP_003901334.1| - 0.02 15.3 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MeaB PF03308.16 gi|307595017|ref|YP_003901334.1| - 0.021 13.8 1.4 0.12 11.3 0.1 2.7 3 1 1 4 4 4 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|307595017|ref|YP_003901334.1| - 0.029 14.6 0.0 0.053 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|307595017|ref|YP_003901334.1| - 0.033 13.3 0.0 0.11 11.6 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein PEPCK_ATP PF01293.20 gi|307595017|ref|YP_003901334.1| - 0.05 12.3 0.0 0.076 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Sigma54_activat PF00158.26 gi|307595017|ref|YP_003901334.1| - 0.052 13.2 0.0 4.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain Viral_helicase1 PF01443.18 gi|307595017|ref|YP_003901334.1| - 0.053 13.3 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|307595017|ref|YP_003901334.1| - 0.063 13.2 0.0 0.82 9.6 0.0 2.4 1 1 1 2 2 2 0 NTPase DEAD PF00270.29 gi|307595017|ref|YP_003901334.1| - 0.073 12.8 0.2 0.94 9.2 0.1 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_23 PF13476.6 gi|307595017|ref|YP_003901334.1| - 0.083 13.4 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|307595017|ref|YP_003901334.1| - 0.1 12.5 0.0 0.27 11.1 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|307595017|ref|YP_003901334.1| - 0.11 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|307595017|ref|YP_003901334.1| - 0.12 11.6 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain TniB PF05621.11 gi|307595017|ref|YP_003901334.1| - 0.13 11.7 0.1 7.7 5.9 0.0 2.3 1 1 0 2 2 2 0 Bacterial TniB protein Parvo_NS1 PF01057.17 gi|307595017|ref|YP_003901334.1| - 0.13 11.3 0.0 0.34 10.0 0.0 1.7 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 tRNA_lig_kinase PF08303.11 gi|307595017|ref|YP_003901334.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 tRNA ligase kinase domain NACHT PF05729.12 gi|307595017|ref|YP_003901334.1| - 0.18 11.7 0.0 1.8 8.5 0.0 2.2 1 1 0 1 1 1 0 NACHT domain DUF2075 PF09848.9 gi|307595017|ref|YP_003901334.1| - 0.19 10.9 0.0 0.87 8.8 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TFIIB PF00382.19 gi|307595018|ref|YP_003901335.1| - 4.1e-35 119.7 2.6 5.9e-17 61.5 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|307595018|ref|YP_003901335.1| - 1e-16 60.2 0.2 1.6e-16 59.5 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|307595018|ref|YP_003901335.1| - 5.2e-05 23.0 0.5 0.014 15.2 0.1 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain zf-RRN7 PF11781.8 gi|307595018|ref|YP_003901335.1| - 5.6e-05 22.7 0.9 9.1e-05 22.1 0.9 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Ribosomal_S27e PF01667.17 gi|307595018|ref|YP_003901335.1| - 5.9e-05 22.7 1.1 0.00011 21.8 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|307595018|ref|YP_003901335.1| - 0.0057 16.0 1.5 2.2 7.8 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|307595018|ref|YP_003901335.1| - 0.0065 16.8 0.1 0.014 15.8 0.1 1.6 1 0 0 1 1 1 1 Restriction alleviation protein Lar Sigma70_r4 PF04545.16 gi|307595018|ref|YP_003901335.1| - 0.011 15.2 0.4 0.35 10.4 0.1 3.2 3 0 0 3 3 3 0 Sigma-70, region 4 zf-RING_9 PF13901.6 gi|307595018|ref|YP_003901335.1| - 0.013 15.5 0.2 0.03 14.3 0.2 1.5 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon Cyclin_C PF02984.19 gi|307595018|ref|YP_003901335.1| - 0.013 15.5 0.1 4.2 7.5 0.0 2.9 3 0 0 3 3 3 0 Cyclin, C-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|307595018|ref|YP_003901335.1| - 0.026 14.5 1.0 0.088 12.8 1.1 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|307595018|ref|YP_003901335.1| - 0.029 14.1 0.6 0.088 12.6 0.6 1.8 1 0 0 1 1 1 0 zinc-ribbon domain HTH_Tnp_ISL3 PF13542.6 gi|307595018|ref|YP_003901335.1| - 0.036 13.5 2.6 0.67 9.4 0.2 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 Zn-ribbon_8 PF09723.10 gi|307595018|ref|YP_003901335.1| - 0.064 13.4 0.1 6.6 6.9 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain TFIIB_C_1 PF18542.1 gi|307595018|ref|YP_003901335.1| - 0.072 13.1 2.1 0.44 10.6 0.2 2.8 1 1 2 3 3 3 0 Transcription factor IIB C-terminal module 1 zinc_ribbon_2 PF13240.6 gi|307595018|ref|YP_003901335.1| - 0.073 12.8 1.9 8.3 6.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|307595018|ref|YP_003901335.1| - 0.076 13.3 0.2 0.16 12.3 0.2 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF1936 PF09151.10 gi|307595018|ref|YP_003901335.1| - 0.12 12.3 0.2 1.6 8.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Auto_anti-p27 PF06677.12 gi|307595018|ref|YP_003901335.1| - 0.19 11.9 0.9 0.36 11.0 0.9 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF35_N PF12172.8 gi|307595018|ref|YP_003901335.1| - 0.2 11.6 0.5 5.9 6.9 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HIT PF01230.23 gi|307595019|ref|YP_003901336.1| - 0.00051 20.7 0.1 0.00073 20.2 0.1 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|307595019|ref|YP_003901336.1| - 0.0016 18.3 1.0 0.0029 17.5 1.0 1.5 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|307595019|ref|YP_003901336.1| - 0.0062 17.0 0.3 0.0093 16.4 0.3 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Ribosomal_L13e PF01294.18 gi|307595022|ref|YP_003901339.1| - 2e-09 37.5 2.5 5.2e-09 36.2 2.5 1.8 1 1 0 1 1 1 1 Ribosomal protein L13e Ribosomal_L15e PF00827.17 gi|307595022|ref|YP_003901339.1| - 7.1e-05 22.6 0.3 0.00014 21.6 0.3 1.5 1 0 0 1 1 1 1 Ribosomal L15 HAD_2 PF13419.6 gi|307595023|ref|YP_003901340.1| - 4.3e-15 56.3 0.1 7.2e-15 55.5 0.1 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|307595023|ref|YP_003901340.1| - 2.2e-09 37.9 0.0 2.2e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|307595023|ref|YP_003901340.1| - 0.0076 16.3 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|307595023|ref|YP_003901340.1| - 0.0099 16.0 0.1 0.026 14.6 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase RNA_binding PF01877.17 gi|307595024|ref|YP_003901341.1| - 5e-18 65.5 0.1 1.2e-17 64.3 0.1 1.6 1 1 0 1 1 1 1 RNA binding Pribosyltran_N PF13793.6 gi|307595025|ref|YP_003901342.1| - 4e-22 78.3 0.0 1.6e-18 66.7 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|307595025|ref|YP_003901342.1| - 6.7e-17 61.5 0.1 5.4e-16 58.5 0.0 2.1 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|307595025|ref|YP_003901342.1| - 4.8e-11 43.0 0.5 8.6e-11 42.2 0.5 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|307595025|ref|YP_003901342.1| - 0.00018 21.0 0.0 0.00037 20.0 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase T2SSF PF00482.23 gi|307595026|ref|YP_003901343.1| - 6.5e-11 42.3 6.8 3.1e-07 30.4 0.0 4.2 3 1 0 3 3 3 2 Type II secretion system (T2SS), protein F CorA PF01544.18 gi|307595026|ref|YP_003901343.1| - 0.049 12.9 2.9 0.15 11.4 2.9 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Rhodanese_C PF12368.8 gi|307595027|ref|YP_003901344.1| - 0.00026 21.3 2.8 0.00033 21.0 2.8 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal Prok-RING_1 PF14446.6 gi|307595027|ref|YP_003901344.1| - 0.002 18.0 10.3 0.0052 16.7 10.4 1.6 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 HscB_4_cys PF18256.1 gi|307595027|ref|YP_003901344.1| - 0.0022 17.8 4.3 0.0022 17.8 4.3 2.8 2 1 1 3 3 3 1 Co-chaperone HscB tetracysteine metal binding motif DZR PF12773.7 gi|307595027|ref|YP_003901344.1| - 0.0023 17.9 6.9 0.21 11.6 6.9 2.5 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|307595027|ref|YP_003901344.1| - 0.0066 16.1 0.9 0.0066 16.1 0.9 2.1 1 1 1 2 2 2 1 A2L zinc ribbon domain zf-C3HC4_3 PF13920.6 gi|307595027|ref|YP_003901344.1| - 0.012 15.5 6.5 0.079 12.8 6.5 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Nudix_N_2 PF14803.6 gi|307595027|ref|YP_003901344.1| - 0.029 14.3 8.6 0.34 10.9 0.8 3.1 3 0 0 3 3 3 0 Nudix N-terminal zf-P11 PF03854.14 gi|307595027|ref|YP_003901344.1| - 0.061 13.0 8.1 0.1 12.3 8.1 1.5 1 1 0 1 1 1 0 P-11 zinc finger zf-AN1 PF01428.16 gi|307595027|ref|YP_003901344.1| - 0.062 13.5 9.6 0.29 11.3 9.6 1.9 1 1 0 1 1 1 0 AN1-like Zinc finger DUF4428 PF14471.6 gi|307595027|ref|YP_003901344.1| - 0.35 10.8 8.1 0.59 10.1 1.7 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) C1_2 PF03107.16 gi|307595027|ref|YP_003901344.1| - 0.42 11.0 13.4 0.31 11.4 9.1 2.0 1 1 1 2 2 2 0 C1 domain HypA PF01155.19 gi|307595027|ref|YP_003901344.1| - 0.43 10.6 5.6 2 8.4 5.6 1.9 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|307595027|ref|YP_003901344.1| - 0.77 9.7 17.4 5.4 7.0 9.5 3.0 1 1 1 2 2 2 0 HIT zinc finger Auto_anti-p27 PF06677.12 gi|307595027|ref|YP_003901344.1| - 1 9.6 10.6 0.34 11.1 1.0 2.9 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NOB1_Zn_bind PF08772.11 gi|307595027|ref|YP_003901344.1| - 1.3 9.2 9.3 2.5 8.3 9.3 1.5 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|307595027|ref|YP_003901344.1| - 1.4 8.7 15.4 0.14 11.9 4.3 3.3 2 1 1 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|307595027|ref|YP_003901344.1| - 1.8 8.1 15.8 21 4.7 6.6 3.8 2 1 1 3 3 3 0 zinc-ribbon domain ADK_lid PF05191.14 gi|307595027|ref|YP_003901344.1| - 2.8 8.0 9.7 17 5.5 0.1 2.9 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-NADH-PPase PF09297.11 gi|307595027|ref|YP_003901344.1| - 3.2 7.5 12.4 3.6 7.3 0.6 3.8 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|307595027|ref|YP_003901344.1| - 5.3 7.1 10.7 1.7 8.7 0.4 2.8 3 1 1 4 4 4 0 PhnA Zinc-Ribbon zf_UBZ PF18439.1 gi|307595027|ref|YP_003901344.1| - 7.3 6.3 11.6 0.83 9.3 0.3 3.2 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-TFIIB PF13453.6 gi|307595027|ref|YP_003901344.1| - 8.5 5.8 11.6 20 4.6 0.3 3.7 4 0 0 4 4 4 0 Transcription factor zinc-finger DUF1035 PF06281.12 gi|307595028|ref|YP_003901345.1| - 0.092 12.8 0.7 0.15 12.1 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1035) XRN1_D2_D3 PF18334.1 gi|307595028|ref|YP_003901345.1| - 0.12 12.6 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 Exoribonuclease Xrn1 D2/D3 domain Adenosine_kin PF04008.14 gi|307595029|ref|YP_003901346.1| - 4.9e-73 244.0 0.1 5.6e-73 243.8 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase T2SSE PF00437.20 gi|307595032|ref|YP_003901349.1| - 1.9e-40 138.7 0.0 2.5e-40 138.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|307595032|ref|YP_003901349.1| - 0.0013 18.0 0.0 0.0022 17.3 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.6 gi|307595032|ref|YP_003901349.1| - 0.0062 16.3 0.4 0.022 14.5 0.1 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|307595032|ref|YP_003901349.1| - 0.01 16.4 0.0 0.043 14.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|307595032|ref|YP_003901349.1| - 0.011 16.0 0.0 0.019 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|307595032|ref|YP_003901349.1| - 0.017 15.0 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|307595032|ref|YP_003901349.1| - 0.021 15.2 0.0 0.048 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|307595032|ref|YP_003901349.1| - 0.036 14.1 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|307595032|ref|YP_003901349.1| - 0.043 14.3 0.0 0.11 13.1 0.0 1.8 1 1 0 1 1 1 0 ABC transporter AAA_14 PF13173.6 gi|307595032|ref|YP_003901349.1| - 0.061 13.4 0.0 0.18 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|307595032|ref|YP_003901349.1| - 0.072 13.4 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|307595032|ref|YP_003901349.1| - 0.079 12.8 0.1 0.32 10.8 0.0 1.9 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_23 PF13476.6 gi|307595032|ref|YP_003901349.1| - 0.099 13.1 0.1 0.099 13.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|307595032|ref|YP_003901349.1| - 0.12 12.8 0.0 0.22 11.9 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|307595032|ref|YP_003901349.1| - 0.15 11.6 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Lung_7-TM_R PF06814.13 gi|307595033|ref|YP_003901350.1| - 0.0082 15.4 0.5 0.012 14.9 0.5 1.1 1 0 0 1 1 1 1 Lung seven transmembrane receptor LTD PF00932.19 gi|307595034|ref|YP_003901351.1| - 2.8e-05 24.5 0.3 3.5e-05 24.1 0.3 1.3 1 0 0 1 1 1 1 Lamin Tail Domain eIF-1a PF01176.19 gi|307595034|ref|YP_003901351.1| - 0.047 13.5 0.0 0.18 11.7 0.0 1.9 1 1 0 1 1 1 0 Translation initiation factor 1A / IF-1 Ribosomal_S5 PF00333.20 gi|307595035|ref|YP_003901352.1| - 7.1e-24 83.6 1.9 1.3e-23 82.7 1.9 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|307595035|ref|YP_003901352.1| - 1.5e-22 78.8 0.0 2.8e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|307595036|ref|YP_003901353.1| - 8.7e-14 51.1 0.0 1.5e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|307595037|ref|YP_003901354.1| - 1.5e-20 74.2 1.0 1.6e-20 74.1 0.2 1.4 1 1 1 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ANAPC2 PF08672.11 gi|307595037|ref|YP_003901354.1| - 0.016 15.7 0.0 0.03 14.8 0.0 1.4 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 TrmB PF01978.19 gi|307595037|ref|YP_003901354.1| - 0.059 13.3 0.1 0.13 12.2 0.1 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FeoC PF09012.10 gi|307595037|ref|YP_003901354.1| - 0.073 13.2 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_45 PF14947.6 gi|307595037|ref|YP_003901354.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix SecY PF00344.20 gi|307595038|ref|YP_003901355.1| - 6.8e-58 196.3 28.7 8.5e-58 196.0 28.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|307595038|ref|YP_003901355.1| - 0.0051 16.6 1.0 0.019 14.8 1.0 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p Methyltrn_RNA_3 PF02598.17 gi|307595040|ref|YP_003901357.1| - 3.7e-56 190.7 0.0 4.2e-56 190.5 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase GGDEF_2 PF17853.1 gi|307595040|ref|YP_003901357.1| - 0.047 14.0 0.0 0.079 13.2 0.0 1.3 1 0 0 1 1 1 0 GGDEF-like domain Ribosomal_L10 PF00466.20 gi|307595040|ref|YP_003901357.1| - 0.047 13.8 0.0 0.097 12.8 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L10 SPOUT_MTase_2 PF14419.6 gi|307595040|ref|YP_003901357.1| - 0.057 12.8 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP Ribosomal_L3 PF00297.22 gi|307595041|ref|YP_003901358.1| - 4.7e-70 236.4 0.0 7.8e-70 235.7 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 QCR10 PF09796.9 gi|307595041|ref|YP_003901358.1| - 0.068 13.2 0.2 0.15 12.1 0.2 1.5 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) ATP-grasp_2 PF08442.10 gi|307595041|ref|YP_003901358.1| - 0.16 11.5 0.0 0.22 11.0 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain Ribosomal_L4 PF00573.22 gi|307595042|ref|YP_003901359.1| - 1.9e-38 132.1 0.1 2.3e-38 131.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|307595043|ref|YP_003901360.1| - 8.4e-17 61.3 6.0 9e-16 58.0 6.0 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 NAD_binding_7 PF13241.6 gi|307595043|ref|YP_003901360.1| - 0.032 14.7 0.2 0.038 14.4 0.2 1.0 1 0 0 1 1 1 0 Putative NAD(P)-binding TusA PF01206.17 gi|307595043|ref|YP_003901360.1| - 0.036 13.9 0.3 0.047 13.5 0.3 1.1 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF961 PF06125.11 gi|307595043|ref|YP_003901360.1| - 0.038 14.3 0.1 0.043 14.2 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF961) DUF45 PF01863.17 gi|307595043|ref|YP_003901360.1| - 0.076 13.1 0.1 0.081 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF45 Coilin_N PF15862.5 gi|307595044|ref|YP_003901361.1| - 0.046 13.5 7.8 0.063 13.1 7.8 1.3 1 0 0 1 1 1 0 Coilin N-terminus AP3D1 PF06375.11 gi|307595044|ref|YP_003901361.1| - 0.25 11.5 13.9 0.35 11.1 13.9 1.3 1 0 0 1 1 1 0 AP-3 complex subunit delta-1 Peptidase_S49_N PF08496.10 gi|307595044|ref|YP_003901361.1| - 0.49 10.4 8.1 0.43 10.6 5.9 1.9 2 0 0 2 2 2 0 Peptidase family S49 N-terminal UNC-79 PF14776.6 gi|307595044|ref|YP_003901361.1| - 0.58 8.9 1.9 0.71 8.6 1.9 1.1 1 0 0 1 1 1 0 Cation-channel complex subunit UNC-79 DUF1764 PF08576.10 gi|307595044|ref|YP_003901361.1| - 3.7 8.5 12.6 5.9 7.9 12.6 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF1764) SMN PF06003.12 gi|307595044|ref|YP_003901361.1| - 6.5 5.9 10.3 9.1 5.4 10.3 1.1 1 0 0 1 1 1 0 Survival motor neuron protein (SMN) MDFI PF15316.6 gi|307595044|ref|YP_003901361.1| - 7 6.7 6.8 8.5 6.4 6.8 1.1 1 0 0 1 1 1 0 MyoD family inhibitor Thioredoxin_3 PF13192.6 gi|307595045|ref|YP_003901362.1| - 3.6e-16 59.0 1.6 1.6e-09 37.7 0.4 2.6 3 0 0 3 3 3 2 Thioredoxin domain Thioredoxin PF00085.20 gi|307595045|ref|YP_003901362.1| - 8.8e-08 32.1 0.0 0.00012 22.0 0.0 2.6 2 1 0 2 2 2 2 Thioredoxin TraF PF13728.6 gi|307595045|ref|YP_003901362.1| - 0.0068 16.2 0.0 0.24 11.2 0.0 2.4 3 0 0 3 3 3 1 F plasmid transfer operon protein RNA_pol_Rpb5_C PF01191.19 gi|307595045|ref|YP_003901362.1| - 0.0074 16.1 0.8 0.025 14.4 0.0 2.2 3 0 0 3 3 3 1 RNA polymerase Rpb5, C-terminal domain Thioredoxin_9 PF14595.6 gi|307595045|ref|YP_003901362.1| - 0.0089 15.8 0.0 0.18 11.6 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|307595045|ref|YP_003901362.1| - 0.0092 16.4 2.7 0.39 11.2 0.6 3.4 2 2 0 2 2 2 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|307595045|ref|YP_003901362.1| - 0.037 13.4 0.0 6.5 6.0 0.0 2.1 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family Thioredoxin_8 PF13905.6 gi|307595045|ref|YP_003901362.1| - 0.05 13.9 0.3 1.2 9.5 0.0 2.9 2 1 0 2 2 2 0 Thioredoxin-like Glutaredoxin PF00462.24 gi|307595045|ref|YP_003901362.1| - 0.15 12.3 6.5 0.19 12.0 0.3 3.5 3 1 0 3 3 3 0 Glutaredoxin Ham1p_like PF01725.16 gi|307595046|ref|YP_003901363.1| - 3.5e-42 144.5 0.0 3.9e-42 144.3 0.0 1.0 1 0 0 1 1 1 1 Ham1 family CGI-121 PF08617.10 gi|307595047|ref|YP_003901364.1| - 0.00052 20.2 0.7 0.0023 18.1 0.4 2.0 2 0 0 2 2 2 1 Kinase binding protein CGI-121 zf-RRN7 PF11781.8 gi|307595048|ref|YP_003901365.1| - 1.3e-06 28.0 0.1 1.6e-06 27.7 0.1 1.1 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|307595048|ref|YP_003901365.1| - 0.00074 18.8 1.8 0.52 9.8 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|307595048|ref|YP_003901365.1| - 0.0018 17.9 2.4 0.036 13.8 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|307595048|ref|YP_003901365.1| - 0.0044 17.1 0.2 0.0048 17.0 0.2 1.2 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like OrfB_Zn_ribbon PF07282.11 gi|307595048|ref|YP_003901365.1| - 0.027 14.4 0.2 0.038 13.9 0.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.13 gi|307595048|ref|YP_003901365.1| - 0.046 13.7 0.5 0.07 13.1 0.5 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF35_N PF12172.8 gi|307595048|ref|YP_003901365.1| - 0.062 13.2 1.0 9 6.3 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|307595048|ref|YP_003901365.1| - 0.076 13.0 1.1 0.19 11.8 1.1 1.7 1 1 0 1 1 1 0 Double zinc ribbon RNA_pol_Rpb2_4 PF04566.13 gi|307595048|ref|YP_003901365.1| - 0.1 12.9 0.0 0.14 12.5 0.0 1.3 1 1 0 1 1 1 0 RNA polymerase Rpb2, domain 4 Herpes_UL49_1 PF03117.14 gi|307595048|ref|YP_003901365.1| - 0.11 11.7 2.1 1.2 8.4 0.1 2.0 1 1 1 2 2 2 0 UL49 family TF_Zn_Ribbon PF08271.12 gi|307595048|ref|YP_003901365.1| - 0.6 9.7 3.3 3.6 7.2 3.3 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding DEAD PF00270.29 gi|307595049|ref|YP_003901366.1| - 5e-31 107.8 0.0 1.6e-30 106.1 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|307595049|ref|YP_003901366.1| - 1.4e-23 83.7 0.1 4.2e-23 82.1 0.1 1.9 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|307595049|ref|YP_003901366.1| - 2.9e-19 69.4 0.0 7.8e-18 64.8 0.2 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|307595049|ref|YP_003901366.1| - 4e-08 33.5 0.0 1.1e-07 32.0 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HypA PF01155.19 gi|307595049|ref|YP_003901366.1| - 0.016 15.2 0.1 0.038 14.0 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|307595049|ref|YP_003901366.1| - 0.082 13.0 0.3 0.18 12.0 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_19 PF13245.6 gi|307595049|ref|YP_003901366.1| - 0.1 12.9 0.1 0.78 10.1 0.1 2.5 1 1 0 1 1 1 0 AAA domain Zn_Tnp_IS1595 PF12760.7 gi|307595049|ref|YP_003901366.1| - 0.77 9.8 3.9 0.43 10.6 0.4 2.5 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Hexapep PF00132.24 gi|307595050|ref|YP_003901367.1| - 4.1e-07 29.5 1.4 0.17 11.6 0.0 4.2 3 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_4 PF13562.6 gi|307595050|ref|YP_003901367.1| - 2.3e-05 24.7 0.0 5.1e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 Sugar nucleotidyl transferase CYTH PF01928.21 gi|307595051|ref|YP_003901368.1| - 2.9e-36 125.1 2.5 3.3e-36 124.9 2.5 1.0 1 0 0 1 1 1 1 CYTH domain FA_desaturase_2 PF03405.14 gi|307595051|ref|YP_003901368.1| - 0.076 11.8 0.1 0.11 11.3 0.1 1.2 1 0 0 1 1 1 0 Fatty acid desaturase AA_permease_2 PF13520.6 gi|307595052|ref|YP_003901369.1| - 9.7e-18 64.2 67.8 1.2e-17 63.9 67.8 1.0 1 0 0 1 1 1 1 Amino acid permease Ycf4 PF02392.16 gi|307595052|ref|YP_003901369.1| - 3.8 7.0 7.5 1.2 8.7 0.3 2.5 2 0 0 2 2 2 0 Ycf4 SBP_bac_11 PF13531.6 gi|307595053|ref|YP_003901370.1| - 1.4e-36 126.4 0.2 1.8e-36 126.1 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein B277 PF17623.2 gi|307595053|ref|YP_003901370.1| - 0.92 8.5 12.7 0.045 12.8 6.8 1.8 2 0 0 2 2 2 0 Domain of unknown function BPD_transp_1 PF00528.22 gi|307595054|ref|YP_003901371.1| - 1.2e-17 64.2 20.3 1.2e-17 64.2 20.3 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PsbI PF02532.14 gi|307595054|ref|YP_003901371.1| - 9.1 6.3 7.6 5.4 7.1 2.7 3.1 2 1 1 3 3 3 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) ABC_tran PF00005.27 gi|307595055|ref|YP_003901372.1| - 6.7e-32 110.9 0.0 9.8e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307595055|ref|YP_003901372.1| - 4e-09 36.7 0.9 0.00014 21.8 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307595055|ref|YP_003901372.1| - 1.4e-06 27.9 0.0 0.00021 20.8 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TrkA_C PF02080.21 gi|307595055|ref|YP_003901372.1| - 0.00011 22.0 0.0 0.045 13.6 0.0 2.5 2 0 0 2 2 2 1 TrkA-C domain TniB PF05621.11 gi|307595055|ref|YP_003901372.1| - 0.00024 20.6 0.2 0.0049 16.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial TniB protein TOBE_2 PF08402.10 gi|307595055|ref|YP_003901372.1| - 0.00067 19.8 0.1 0.0017 18.5 0.1 1.7 1 0 0 1 1 1 1 TOBE domain AAA_30 PF13604.6 gi|307595055|ref|YP_003901372.1| - 0.0016 18.2 0.1 0.0063 16.3 0.0 2.0 2 1 1 3 3 2 1 AAA domain AAA_23 PF13476.6 gi|307595055|ref|YP_003901372.1| - 0.0018 18.8 0.0 0.0026 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|307595055|ref|YP_003901372.1| - 0.0029 17.3 0.0 0.0058 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 gi|307595055|ref|YP_003901372.1| - 0.0071 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|307595055|ref|YP_003901372.1| - 0.011 15.7 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|307595055|ref|YP_003901372.1| - 0.012 15.8 0.1 0.27 11.5 0.1 2.5 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|307595055|ref|YP_003901372.1| - 0.015 15.2 0.1 0.024 14.6 0.1 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_ATPase PF09818.9 gi|307595055|ref|YP_003901372.1| - 0.019 13.8 0.1 6.1 5.5 0.1 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 gi|307595055|ref|YP_003901372.1| - 0.025 14.7 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|307595055|ref|YP_003901372.1| - 0.032 14.5 0.7 0.12 12.7 0.7 1.9 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|307595055|ref|YP_003901372.1| - 0.036 13.0 0.0 0.059 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_25 PF13481.6 gi|307595055|ref|YP_003901372.1| - 0.054 13.1 0.0 4.5 6.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|307595055|ref|YP_003901372.1| - 0.066 13.1 0.4 0.12 12.3 0.2 1.6 1 1 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|307595055|ref|YP_003901372.1| - 0.072 13.0 0.2 0.25 11.2 0.0 1.8 2 0 0 2 2 2 0 NTPase TOBE PF03459.17 gi|307595055|ref|YP_003901372.1| - 0.078 13.3 0.3 0.25 11.7 0.1 2.0 2 0 0 2 2 2 0 TOBE domain AAA_16 PF13191.6 gi|307595055|ref|YP_003901372.1| - 0.082 13.3 0.1 0.18 12.2 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|307595055|ref|YP_003901372.1| - 0.087 12.8 0.1 1.3 9.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|307595055|ref|YP_003901372.1| - 0.11 12.5 0.6 0.23 11.6 0.6 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_28 PF13521.6 gi|307595055|ref|YP_003901372.1| - 0.12 12.6 0.3 1.2 9.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|307595055|ref|YP_003901372.1| - 0.14 12.6 0.3 0.96 9.9 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|307595055|ref|YP_003901372.1| - 0.15 11.4 0.0 0.43 9.9 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family cobW PF02492.19 gi|307595055|ref|YP_003901372.1| - 0.18 11.4 0.2 0.32 10.6 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|307595055|ref|YP_003901372.1| - 0.18 10.4 0.0 0.37 9.4 0.1 1.4 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|307595055|ref|YP_003901372.1| - 0.19 10.5 0.0 0.3 9.8 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein Malic_M PF03949.15 gi|307595056|ref|YP_003901373.1| - 1.1e-26 93.6 1.2 3.5e-25 88.8 1.2 2.1 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|307595056|ref|YP_003901373.1| - 6.2e-25 88.0 0.0 7.4e-18 65.0 0.0 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain ThiF PF00899.21 gi|307595056|ref|YP_003901373.1| - 0.02 14.2 0.4 0.047 13.0 0.4 1.5 1 0 0 1 1 1 0 ThiF family UPF0147 PF03685.13 gi|307595057|ref|YP_003901374.1| - 2.4e-30 104.4 0.1 3.4e-30 103.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HTH_24 PF13412.6 gi|307595058|ref|YP_003901375.1| - 3.2e-15 55.4 1.2 3.2e-15 55.4 1.2 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|307595058|ref|YP_003901375.1| - 8.5e-13 48.1 0.0 1.3e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|307595058|ref|YP_003901375.1| - 7.3e-12 44.9 1.5 8.4e-12 44.7 0.1 1.9 3 0 0 3 3 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|307595058|ref|YP_003901375.1| - 3.7e-08 33.2 0.7 1.2e-07 31.6 0.7 1.9 1 1 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|307595058|ref|YP_003901375.1| - 1.7e-06 28.0 0.0 3.5e-06 27.0 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.22 gi|307595058|ref|YP_003901375.1| - 6.5e-06 26.0 0.6 1.3e-05 25.1 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|307595058|ref|YP_003901375.1| - 2.8e-05 23.9 0.7 4.9e-05 23.1 0.1 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|307595058|ref|YP_003901375.1| - 2.9e-05 24.1 0.0 4.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.6 gi|307595058|ref|YP_003901375.1| - 6.8e-05 22.6 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain TrmB PF01978.19 gi|307595058|ref|YP_003901375.1| - 0.00013 21.8 0.1 0.00044 20.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|307595058|ref|YP_003901375.1| - 0.00023 20.9 0.0 0.00063 19.5 0.0 1.7 2 0 0 2 2 1 1 HTH DNA binding domain HTH_DeoR PF08220.12 gi|307595058|ref|YP_003901375.1| - 0.00028 20.6 0.1 0.00054 19.7 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_WhiA PF02650.14 gi|307595058|ref|YP_003901375.1| - 0.00054 20.2 0.4 0.0013 19.1 0.1 1.8 2 0 0 2 2 1 1 WhiA C-terminal HTH domain HTH_IclR PF09339.10 gi|307595058|ref|YP_003901375.1| - 0.00067 19.4 0.0 0.0023 17.7 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|307595058|ref|YP_003901375.1| - 0.00084 19.3 0.2 0.0014 18.5 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|307595058|ref|YP_003901375.1| - 0.0026 17.6 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|307595058|ref|YP_003901375.1| - 0.0035 17.1 0.0 0.0063 16.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Mga PF08280.11 gi|307595058|ref|YP_003901375.1| - 0.0038 17.2 3.1 0.0065 16.5 3.1 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.7 gi|307595058|ref|YP_003901375.1| - 0.0049 17.0 0.1 0.011 15.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.13 gi|307595058|ref|YP_003901375.1| - 0.0053 17.3 0.1 0.011 16.3 0.1 1.4 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_8 PF02954.19 gi|307595058|ref|YP_003901375.1| - 0.0098 15.7 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family DDRGK PF09756.9 gi|307595058|ref|YP_003901375.1| - 0.013 15.1 0.2 0.019 14.6 0.2 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_Crp_2 PF13545.6 gi|307595058|ref|YP_003901375.1| - 0.019 14.9 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|307595058|ref|YP_003901375.1| - 0.019 15.1 0.0 0.038 14.1 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_6 PF01418.17 gi|307595058|ref|YP_003901375.1| - 0.03 14.3 0.1 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_22 PF13309.6 gi|307595058|ref|YP_003901375.1| - 0.032 14.3 0.0 0.072 13.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.17 gi|307595058|ref|YP_003901375.1| - 0.038 13.8 0.2 0.28 11.1 0.2 2.0 2 0 0 2 2 2 0 TFIIE alpha subunit FUR PF01475.19 gi|307595058|ref|YP_003901375.1| - 0.047 13.8 0.1 0.15 12.2 0.0 1.8 2 0 0 2 2 2 0 Ferric uptake regulator family Fe_dep_repress PF01325.19 gi|307595058|ref|YP_003901375.1| - 0.047 13.9 0.1 0.13 12.5 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|307595058|ref|YP_003901375.1| - 0.05 13.4 0.0 0.14 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|307595058|ref|YP_003901375.1| - 0.057 13.6 0.1 0.12 12.7 0.0 1.6 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_34 PF13601.6 gi|307595058|ref|YP_003901375.1| - 0.082 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_1_2 PF13022.6 gi|307595058|ref|YP_003901375.1| - 0.093 12.9 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_1 PF00126.27 gi|307595058|ref|YP_003901375.1| - 0.12 12.3 0.0 0.31 11.0 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.6 gi|307595058|ref|YP_003901375.1| - 0.14 12.7 0.2 0.29 11.7 0.1 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain DNA_pol_B PF00136.21 gi|307595059|ref|YP_003901376.1| - 7.3e-66 222.7 0.0 1.2e-65 222.0 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|307595059|ref|YP_003901376.1| - 4.7e-41 141.0 0.2 1.5e-39 136.0 0.1 2.7 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|307595059|ref|YP_003901376.1| - 9e-11 41.9 0.0 2e-10 40.7 0.0 1.6 1 1 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|307595059|ref|YP_003901376.1| - 4.3e-10 39.8 0.0 8e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|307595059|ref|YP_003901376.1| - 0.0072 15.2 0.2 0.016 14.1 0.2 1.6 1 1 0 1 1 1 1 DNA polymerase type B, organellar and viral RPN7 PF10602.9 gi|307595059|ref|YP_003901376.1| - 0.14 11.9 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 26S proteasome subunit RPN7 Toprim_4 PF13662.6 gi|307595060|ref|YP_003901377.1| - 1.4e-07 31.8 0.1 4.7e-07 30.2 0.1 1.9 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|307595060|ref|YP_003901377.1| - 0.00012 22.4 0.0 0.00032 21.1 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|307595060|ref|YP_003901377.1| - 0.0041 17.3 0.1 0.018 15.2 0.1 2.2 1 1 0 1 1 1 1 Toprim domain Pex14_N PF04695.13 gi|307595060|ref|YP_003901377.1| - 0.0097 16.6 12.2 0.02 15.6 12.2 1.4 1 0 0 1 1 1 1 Peroxisomal membrane anchor protein (Pex14p) conserved region PAT1 PF09770.9 gi|307595060|ref|YP_003901377.1| - 0.02 13.2 9.0 0.027 12.8 9.0 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 PBSX_XtrA PF17356.2 gi|307595060|ref|YP_003901377.1| - 0.033 14.1 0.4 0.95 9.4 0.1 2.8 2 0 0 2 2 2 0 Phage-like element PBSX protein XtrA FAM222A PF15258.6 gi|307595060|ref|YP_003901377.1| - 0.28 10.2 12.5 0.38 9.8 12.5 1.1 1 0 0 1 1 1 0 Protein family of FAM222A Lin-8 PF03353.15 gi|307595060|ref|YP_003901377.1| - 1.5 8.3 7.0 2.4 7.6 7.0 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist TFIIA PF03153.13 gi|307595060|ref|YP_003901377.1| - 8.6 6.2 13.4 12 5.7 13.4 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Peptidase_M24 PF00557.24 gi|307595061|ref|YP_003901378.1| - 1.1e-37 129.7 0.0 1.4e-37 129.4 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Prenyltransf PF01255.19 gi|307595062|ref|YP_003901379.1| - 2.5e-69 233.2 0.0 2.9e-69 233.0 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Epimerase PF01370.21 gi|307595063|ref|YP_003901380.1| - 3.1e-23 82.5 0.0 5.5e-23 81.7 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|307595063|ref|YP_003901380.1| - 1.9e-18 66.9 0.0 5.5e-17 62.2 0.0 2.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|307595063|ref|YP_003901380.1| - 0.00044 19.5 0.0 0.00084 18.5 0.0 1.5 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|307595063|ref|YP_003901380.1| - 0.0007 18.8 0.0 0.0012 18.0 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Glyco_transf_4 PF13439.6 gi|307595063|ref|YP_003901380.1| - 0.0022 18.0 0.1 0.0044 17.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 KR PF08659.10 gi|307595063|ref|YP_003901380.1| - 0.0091 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 KR domain UDPG_MGDP_dh_N PF03721.14 gi|307595063|ref|YP_003901380.1| - 0.029 13.9 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Orthopox_A49R PF06489.11 gi|307595063|ref|YP_003901380.1| - 0.052 13.8 0.0 0.18 12.0 0.1 1.8 2 0 0 2 2 2 0 Orthopoxvirus A49R protein tRNA-Thr_ED PF08915.11 gi|307595064|ref|YP_003901381.1| - 6.6e-47 159.0 0.0 1.2e-46 158.2 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|307595064|ref|YP_003901381.1| - 8.1e-22 77.2 1.2 2e-21 75.9 0.6 2.1 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|307595064|ref|YP_003901381.1| - 1.2e-17 64.5 0.5 2.4e-17 63.5 0.5 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) INT_SG_DDX_CT_C PF15300.6 gi|307595064|ref|YP_003901381.1| - 0.025 14.4 0.1 0.12 12.2 0.1 2.2 2 0 0 2 2 2 0 INTS6/SAGE1/DDX26B/CT45 C-terminus HGTP_anticodon2 PF12745.7 gi|307595064|ref|YP_003901381.1| - 0.056 12.9 0.0 0.098 12.2 0.0 1.3 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs DUF981 PF06168.11 gi|307595065|ref|YP_003901382.1| - 1.5e-61 207.6 20.6 1.9e-61 207.3 20.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) Herpes_TK PF00693.18 gi|307595065|ref|YP_003901382.1| - 0.09 12.0 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Thymidine kinase from herpesvirus Nre_N PF04894.12 gi|307595066|ref|YP_003901383.1| - 2.5e-80 270.2 0.0 3.3e-80 269.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|307595066|ref|YP_003901383.1| - 1.2e-34 118.5 0.0 4.4e-32 110.3 0.0 2.3 2 0 0 2 2 2 2 Archaeal Nre, C-terminal UbiA PF01040.18 gi|307595067|ref|YP_003901384.1| - 1.8e-44 152.0 24.8 2.3e-44 151.6 24.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Bac_export_3 PF01313.19 gi|307595067|ref|YP_003901384.1| - 0.018 15.0 0.3 0.018 15.0 0.3 3.9 5 0 0 5 5 5 0 Bacterial export proteins, family 3 DUF87 PF01935.17 gi|307595068|ref|YP_003901385.1| - 1.1e-36 127.1 0.0 1.6e-36 126.6 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|307595068|ref|YP_003901385.1| - 0.0001 21.4 0.0 0.0023 16.9 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain DUF853 PF05872.12 gi|307595068|ref|YP_003901385.1| - 0.01 14.4 0.0 1.2 7.6 0.0 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Phage_Gp17 PF17549.2 gi|307595068|ref|YP_003901385.1| - 0.071 13.1 0.1 0.19 11.8 0.1 1.7 1 0 0 1 1 1 0 Gene Product 17 AAA_22 PF13401.6 gi|307595068|ref|YP_003901385.1| - 0.15 12.3 0.0 2.7 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain T4SS-DNA_transf PF02534.14 gi|307595068|ref|YP_003901385.1| - 0.31 9.8 0.2 2.1 7.1 0.0 2.0 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer DUF2848 PF11010.8 gi|307595071|ref|YP_003901388.1| - 1.5e-62 210.7 0.0 1.8e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2848) Ribosomal_L37ae PF01780.19 gi|307595073|ref|YP_003901390.1| - 9.4e-31 105.8 3.4 1.1e-30 105.5 3.4 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_ribbon_SprT PF17283.2 gi|307595073|ref|YP_003901390.1| - 0.0007 19.4 5.4 0.14 12.1 0.7 2.3 2 0 0 2 2 2 2 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|307595073|ref|YP_003901390.1| - 0.0008 19.3 3.8 0.0013 18.7 3.8 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|307595073|ref|YP_003901390.1| - 0.0018 17.6 0.4 0.0033 16.7 0.4 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger IBR PF01485.21 gi|307595073|ref|YP_003901390.1| - 0.0065 16.7 0.4 0.0094 16.2 0.4 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain Zn-ribbon_8 PF09723.10 gi|307595073|ref|YP_003901390.1| - 0.0065 16.6 0.4 1.8 8.8 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|307595073|ref|YP_003901390.1| - 0.0075 15.6 2.9 1.1 8.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|307595073|ref|YP_003901390.1| - 0.0078 16.0 0.3 4 7.3 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO zf-ISL3 PF14690.6 gi|307595073|ref|YP_003901390.1| - 0.0083 16.8 1.5 3.8 8.3 0.2 2.5 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.19 gi|307595073|ref|YP_003901390.1| - 0.012 15.6 0.1 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|307595073|ref|YP_003901390.1| - 0.016 15.1 1.6 0.024 14.5 1.6 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.11 gi|307595073|ref|YP_003901390.1| - 0.016 15.1 0.3 0.024 14.6 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-LITAF-like PF10601.9 gi|307595073|ref|YP_003901390.1| - 0.019 15.2 0.8 0.3 11.4 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DZR PF12773.7 gi|307595073|ref|YP_003901390.1| - 0.021 14.8 1.1 0.072 13.1 1.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-HIT PF04438.16 gi|307595073|ref|YP_003901390.1| - 0.033 14.1 2.1 3.6 7.5 0.4 2.2 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_4 PF13717.6 gi|307595073|ref|YP_003901390.1| - 0.045 13.7 4.4 1.4 8.9 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|307595073|ref|YP_003901390.1| - 0.056 13.2 1.5 4.6 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|307595073|ref|YP_003901390.1| - 0.068 13.2 1.9 3.8 7.7 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|307595073|ref|YP_003901390.1| - 0.079 12.6 1.2 4.1 7.1 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2225 PF09986.9 gi|307595073|ref|YP_003901390.1| - 0.098 12.4 0.9 0.17 11.6 0.9 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF1610 PF07754.11 gi|307595073|ref|YP_003901390.1| - 0.12 12.4 1.0 6.2 6.9 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF4379 PF14311.6 gi|307595073|ref|YP_003901390.1| - 0.14 12.6 3.7 1.3 9.5 0.2 2.3 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|307595073|ref|YP_003901390.1| - 0.14 11.9 3.3 3.2 7.5 3.4 2.1 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Rubredoxin PF00301.20 gi|307595073|ref|YP_003901390.1| - 0.19 11.8 2.5 2.6 8.1 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin CpXC PF14353.6 gi|307595073|ref|YP_003901390.1| - 0.2 11.7 2.3 5.8 7.0 0.2 2.1 1 1 1 2 2 2 0 CpXC protein zf_C2H2_10 PF18414.1 gi|307595073|ref|YP_003901390.1| - 0.24 10.9 7.3 0.76 9.4 0.2 2.5 3 0 0 3 3 3 0 C2H2 type zinc-finger zf-H2C2_2 PF13465.6 gi|307595073|ref|YP_003901390.1| - 0.49 10.9 7.3 20 5.8 7.3 2.3 1 1 0 1 1 1 0 Zinc-finger double domain UPF0547 PF10571.9 gi|307595073|ref|YP_003901390.1| - 0.49 10.5 7.4 16 5.7 7.4 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|307595073|ref|YP_003901390.1| - 1.5 8.6 8.7 0.83 9.4 0.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-CCHC_5 PF14787.6 gi|307595073|ref|YP_003901390.1| - 1.8 8.3 7.3 5.4 6.8 1.4 2.3 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger TF_Zn_Ribbon PF08271.12 gi|307595073|ref|YP_003901390.1| - 5.1 6.7 5.5 60 3.3 5.6 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|307595073|ref|YP_003901390.1| - 8.2 6.3 8.0 1.3e+02 2.5 8.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Bromodomain PF00439.25 gi|307595074|ref|YP_003901391.1| - 0.17 11.9 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Bromodomain Pcc1 PF09341.10 gi|307595075|ref|YP_003901392.1| - 2.2e-05 24.5 0.1 2.6e-05 24.3 0.1 1.3 1 1 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.20 gi|307595076|ref|YP_003901393.1| - 5.2e-23 81.0 14.1 5.9e-23 80.9 14.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF3584 PF12128.8 gi|307595076|ref|YP_003901393.1| - 0.00047 17.8 3.5 0.00054 17.6 3.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.9 gi|307595076|ref|YP_003901393.1| - 0.00048 20.2 10.9 0.013 15.5 1.0 2.1 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2353 PF09789.9 gi|307595076|ref|YP_003901393.1| - 0.0041 16.5 6.5 0.0048 16.3 6.5 1.0 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) Enkurin PF13864.6 gi|307595076|ref|YP_003901393.1| - 0.0049 17.3 0.9 0.0049 17.3 0.9 2.2 2 0 0 2 2 2 1 Calmodulin-binding DMPK_coil PF08826.10 gi|307595076|ref|YP_003901393.1| - 0.0057 16.7 4.3 0.0057 16.7 4.3 2.7 2 1 0 2 2 2 1 DMPK coiled coil domain like TMCO5 PF14992.6 gi|307595076|ref|YP_003901393.1| - 0.007 16.0 8.4 0.0092 15.6 8.4 1.1 1 0 0 1 1 1 1 TMCO5 family IDEAL PF08858.10 gi|307595076|ref|YP_003901393.1| - 0.017 14.8 1.1 0.017 14.8 1.1 2.5 2 1 0 2 2 2 0 IDEAL domain Fic_N PF13784.6 gi|307595076|ref|YP_003901393.1| - 0.029 14.4 2.5 0.13 12.3 0.1 2.2 2 0 0 2 2 2 0 Fic/DOC family N-terminal HlyD_2 PF12700.7 gi|307595076|ref|YP_003901393.1| - 0.03 13.1 6.9 0.039 12.7 6.9 1.0 1 0 0 1 1 1 0 HlyD family secretion protein DUF3450 PF11932.8 gi|307595076|ref|YP_003901393.1| - 0.032 13.5 9.8 0.47 9.7 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Prefoldin PF02996.17 gi|307595076|ref|YP_003901393.1| - 0.034 14.1 11.0 3 7.8 11.0 2.5 1 1 0 1 1 1 0 Prefoldin subunit DUF2203 PF09969.9 gi|307595076|ref|YP_003901393.1| - 0.045 14.5 6.4 12 6.6 6.4 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF724 PF05266.14 gi|307595076|ref|YP_003901393.1| - 0.06 13.2 8.5 0.1 12.4 8.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF724) PAF-AH_p_II PF03403.13 gi|307595076|ref|YP_003901393.1| - 0.083 11.4 0.4 0.099 11.1 0.4 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF4510 PF14971.6 gi|307595076|ref|YP_003901393.1| - 0.087 13.2 4.4 0.11 12.9 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4510) TPR_MLP1_2 PF07926.12 gi|307595076|ref|YP_003901393.1| - 0.092 12.8 15.5 0.33 11.0 2.9 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.22 gi|307595076|ref|YP_003901393.1| - 0.11 12.8 9.4 1.3 9.3 1.1 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Tropomyosin_1 PF12718.7 gi|307595076|ref|YP_003901393.1| - 0.12 12.6 10.6 0.68 10.1 1.7 2.1 2 0 0 2 2 2 0 Tropomyosin like Snf7 PF03357.21 gi|307595076|ref|YP_003901393.1| - 0.12 11.9 7.7 0.41 10.2 1.2 2.0 1 1 1 2 2 2 0 Snf7 Utp12 PF04003.12 gi|307595076|ref|YP_003901393.1| - 0.14 12.5 2.9 0.14 12.5 0.2 2.1 2 1 0 2 2 2 0 Dip2/Utp12 Family Rogdi_lz PF10259.9 gi|307595076|ref|YP_003901393.1| - 0.19 11.2 5.2 0.26 10.7 1.3 2.1 1 1 0 2 2 2 0 Rogdi leucine zipper containing protein MscS_porin PF12795.7 gi|307595076|ref|YP_003901393.1| - 0.22 11.0 14.3 0.45 10.0 0.9 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain COG2 PF06148.11 gi|307595076|ref|YP_003901393.1| - 0.24 11.5 6.3 1 9.4 1.0 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Med30 PF11315.8 gi|307595076|ref|YP_003901393.1| - 0.25 11.5 8.1 0.39 10.9 8.1 1.3 1 1 0 1 1 1 0 Mediator complex subunit 30 IL2 PF00715.17 gi|307595076|ref|YP_003901393.1| - 0.29 11.1 6.3 1.9 8.4 3.3 2.0 1 1 1 2 2 2 0 Interleukin 2 K-box PF01486.17 gi|307595076|ref|YP_003901393.1| - 0.31 11.2 12.0 1.6 8.9 1.2 2.2 2 0 0 2 2 2 0 K-box region FlaC_arch PF05377.11 gi|307595076|ref|YP_003901393.1| - 0.34 11.3 8.5 4.2 7.8 1.2 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) JAKMIP_CC3 PF16034.5 gi|307595076|ref|YP_003901393.1| - 0.36 10.8 8.3 0.48 10.3 8.3 1.2 1 0 0 1 1 1 0 JAKMIP CC3 domain DUF1664 PF07889.12 gi|307595076|ref|YP_003901393.1| - 0.39 10.8 8.3 0.91 9.6 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF919 PF06034.11 gi|307595076|ref|YP_003901393.1| - 0.39 10.6 5.9 0.15 11.9 1.2 2.5 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) LPP PF04728.13 gi|307595076|ref|YP_003901393.1| - 0.52 10.7 5.0 4.5 7.7 0.1 2.5 2 1 0 2 2 2 0 Lipoprotein leucine-zipper DUF2408 PF10303.9 gi|307595076|ref|YP_003901393.1| - 0.53 10.8 7.4 1.4 9.5 7.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) LUC7 PF03194.15 gi|307595076|ref|YP_003901393.1| - 0.54 9.9 4.2 1.5 8.5 0.3 2.0 1 1 1 2 2 2 0 LUC7 N_terminus GAS PF13851.6 gi|307595076|ref|YP_003901393.1| - 0.59 9.4 14.6 2.9 7.2 14.6 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding RasGAP_C PF03836.15 gi|307595076|ref|YP_003901393.1| - 0.69 10.1 9.2 0.56 10.3 2.3 2.1 1 1 0 2 2 2 0 RasGAP C-terminus ATG16 PF08614.11 gi|307595076|ref|YP_003901393.1| - 0.71 10.1 11.6 0.82 9.9 0.8 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Fmp27_WPPW PF10359.9 gi|307595076|ref|YP_003901393.1| - 0.72 8.6 5.4 1.1 8.0 5.4 1.3 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Spc7 PF08317.11 gi|307595076|ref|YP_003901393.1| - 0.72 8.7 14.2 0.24 10.3 2.6 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF948 PF06103.11 gi|307595076|ref|YP_003901393.1| - 0.8 10.0 4.3 2.7 8.3 1.0 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Filament PF00038.21 gi|307595076|ref|YP_003901393.1| - 0.82 9.2 12.2 2.5 7.6 1.9 2.0 1 1 0 2 2 2 0 Intermediate filament protein YojJ PF10372.9 gi|307595076|ref|YP_003901393.1| - 0.88 9.7 9.4 2.9 8.0 3.1 2.3 2 1 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus DivIC PF04977.15 gi|307595076|ref|YP_003901393.1| - 0.95 9.3 13.6 2 8.3 2.0 2.5 2 1 0 2 2 2 0 Septum formation initiator Nup54 PF13874.6 gi|307595076|ref|YP_003901393.1| - 1.1 9.3 8.1 4.9 7.3 8.1 1.8 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Tektin PF03148.14 gi|307595076|ref|YP_003901393.1| - 1.3 7.7 10.5 2 7.1 2.4 2.0 2 0 0 2 2 2 0 Tektin family NPV_P10 PF05531.12 gi|307595076|ref|YP_003901393.1| - 1.3 9.5 6.2 3.7 8.1 0.9 2.5 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein CENP-Q PF13094.6 gi|307595076|ref|YP_003901393.1| - 1.4 9.1 11.0 2.4 8.4 2.1 2.1 1 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3086 PF11285.8 gi|307595076|ref|YP_003901393.1| - 1.4 8.0 8.5 0.9 8.6 2.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) Cortex-I_coil PF09304.10 gi|307595076|ref|YP_003901393.1| - 1.4 9.2 11.7 1.9 8.8 4.3 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil HMMR_N PF15905.5 gi|307595076|ref|YP_003901393.1| - 1.7 8.0 15.0 2.8 7.3 5.5 1.9 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Fzo_mitofusin PF04799.13 gi|307595076|ref|YP_003901393.1| - 1.8 8.1 9.1 0.36 10.4 0.8 2.1 1 1 1 2 2 2 0 fzo-like conserved region Spc24 PF08286.11 gi|307595076|ref|YP_003901393.1| - 1.9 8.8 11.2 3.3 8.0 2.7 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 ALIX_LYPXL_bnd PF13949.6 gi|307595076|ref|YP_003901393.1| - 1.9 7.7 11.0 7.1 5.8 11.0 1.6 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV DHR10 PF18595.1 gi|307595076|ref|YP_003901393.1| - 1.9 8.5 18.1 58 3.8 18.1 2.0 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain CdvA PF18822.1 gi|307595076|ref|YP_003901393.1| - 2.1 8.2 11.2 5.1 6.9 0.8 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain APG6_N PF17675.1 gi|307595076|ref|YP_003901393.1| - 2.9 8.4 15.6 6.6 7.3 14.5 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region Laminin_II PF06009.12 gi|307595076|ref|YP_003901393.1| - 3.8 7.5 9.8 11 6.1 9.8 1.6 1 1 0 1 1 1 0 Laminin Domain II AAA_23 PF13476.6 gi|307595076|ref|YP_003901393.1| - 4.3 7.8 17.5 4.5 7.7 2.5 2.0 2 0 0 2 2 2 0 AAA domain HemX PF04375.14 gi|307595076|ref|YP_003901393.1| - 4.4 6.5 11.1 69 2.6 11.1 2.0 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4795 PF16043.5 gi|307595076|ref|YP_003901393.1| - 4.6 6.8 12.3 17 4.9 12.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) YabA PF06156.13 gi|307595076|ref|YP_003901393.1| - 5.8 7.6 8.8 13 6.5 0.9 2.1 1 1 0 2 2 2 0 Initiation control protein YabA Swi5 PF07061.11 gi|307595076|ref|YP_003901393.1| - 5.9 7.0 10.1 35 4.6 2.4 2.9 1 1 1 2 2 2 0 Swi5 DUF4140 PF13600.6 gi|307595076|ref|YP_003901393.1| - 6.8 7.2 10.7 1.5e+03 -0.4 10.7 2.8 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Atg14 PF10186.9 gi|307595076|ref|YP_003901393.1| - 8.9 5.3 10.4 25 3.8 10.5 1.6 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 SlyX PF04102.12 gi|307595076|ref|YP_003901393.1| - 9.2 7.0 10.1 7.9 7.2 2.1 2.5 2 0 0 2 2 2 0 SlyX Mod_r PF07200.13 gi|307595076|ref|YP_003901393.1| - 9.2 6.4 14.3 2 8.5 4.8 2.1 1 1 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein AHD PF17793.1 gi|307595076|ref|YP_003901393.1| - 9.7 6.1 9.7 8.7 6.2 1.1 3.0 2 1 0 2 2 2 0 ANC1 homology domain (AHD) DUF3194 PF11419.8 gi|307595077|ref|YP_003901394.1| - 3.7e-08 33.6 2.4 1.9e-07 31.3 1.3 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3194) DUF1548 PF07579.11 gi|307595077|ref|YP_003901394.1| - 0.082 13.2 0.4 0.84 10.0 0.2 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1548) DHH PF01368.20 gi|307595078|ref|YP_003901395.1| - 4.8e-11 42.8 0.0 7.9e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|307595078|ref|YP_003901395.1| - 7.1e-09 36.2 0.1 1.2e-08 35.5 0.1 1.4 1 0 0 1 1 1 1 DHHA1 domain CTP_transf_like PF01467.26 gi|307595078|ref|YP_003901395.1| - 0.059 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase-like T2SSE PF00437.20 gi|307595080|ref|YP_003901397.1| - 2.2e-50 171.3 0.0 3.3e-50 170.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|307595080|ref|YP_003901397.1| - 0.0036 17.8 0.0 0.0081 16.7 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|307595080|ref|YP_003901397.1| - 0.0043 17.4 0.0 0.0082 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|307595080|ref|YP_003901397.1| - 0.0087 15.8 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain PIF1 PF05970.14 gi|307595080|ref|YP_003901397.1| - 0.033 13.3 0.0 0.059 12.5 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase DUF87 PF01935.17 gi|307595080|ref|YP_003901397.1| - 0.068 13.3 0.1 0.81 9.7 0.0 2.5 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|307595080|ref|YP_003901397.1| - 0.13 12.8 0.1 0.28 11.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|307595080|ref|YP_003901397.1| - 0.15 12.1 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Dynamin family FapA PF03961.13 gi|307595081|ref|YP_003901398.1| - 0.0046 15.6 1.4 0.005 15.5 1.4 1.0 1 0 0 1 1 1 1 Flagellar Assembly Protein A ProRS-C_2 PF09181.10 gi|307595081|ref|YP_003901398.1| - 0.11 12.6 0.4 0.11 12.6 0.4 2.2 2 1 0 2 2 2 0 Prolyl-tRNA synthetase, C-terminal DHDPS PF00701.22 gi|307595081|ref|YP_003901398.1| - 0.14 10.8 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family TBK1_CCD1 PF18394.1 gi|307595081|ref|YP_003901398.1| - 0.19 11.3 2.8 0.3 10.6 2.7 1.3 1 1 0 1 1 1 0 TANK-binding kinase 1 coiled-coil domain 1 DASH_Dam1 PF08653.10 gi|307595081|ref|YP_003901398.1| - 0.34 10.7 4.0 0.34 10.8 0.7 2.1 2 0 0 2 2 2 0 DASH complex subunit Dam1 EI24 PF07264.11 gi|307595082|ref|YP_003901399.1| - 3.2 8.0 8.9 7.9 6.7 7.9 2.1 2 1 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) Herpes_glycop PF01528.16 gi|307595082|ref|YP_003901399.1| - 7.9 5.2 8.1 12 4.6 8.1 1.2 1 0 0 1 1 1 0 Herpesvirus glycoprotein M TENA_THI-4 PF03070.16 gi|307595085|ref|YP_003901402.1| - 0.012 15.5 0.2 0.032 14.0 0.0 1.7 2 0 0 2 2 2 0 TENA/THI-4/PQQC family RE_Alw26IDE PF09665.10 gi|307595085|ref|YP_003901402.1| - 0.028 13.6 0.3 0.032 13.4 0.3 1.0 1 0 0 1 1 1 0 Type II restriction endonuclease (RE_Alw26IDE) Snapin_Pallidin PF14712.6 gi|307595086|ref|YP_003901403.1| - 0.05 14.0 0.4 9.9 6.7 0.0 2.2 2 0 0 2 2 2 0 Snapin/Pallidin FlaC_arch PF05377.11 gi|307595086|ref|YP_003901403.1| - 0.067 13.6 3.2 2.5 8.6 0.1 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) BORCS7 PF16088.5 gi|307595086|ref|YP_003901403.1| - 0.077 13.3 0.7 2.9 8.2 0.0 2.1 2 0 0 2 2 2 0 BLOC-1-related complex sub-unit 7 Sec34 PF04136.15 gi|307595086|ref|YP_003901403.1| - 0.079 12.8 0.3 5.5 6.9 0.0 2.1 2 0 0 2 2 2 0 Sec34-like family Prefoldin_2 PF01920.20 gi|307595086|ref|YP_003901403.1| - 0.087 12.8 0.8 2.2 8.3 0.2 2.1 2 0 0 2 2 2 0 Prefoldin subunit DASH_Duo1 PF08651.10 gi|307595086|ref|YP_003901403.1| - 0.094 12.5 0.8 0.6 9.9 0.2 2.1 2 0 0 2 2 2 0 DASH complex subunit Duo1 ALIX_LYPXL_bnd PF13949.6 gi|307595086|ref|YP_003901403.1| - 0.12 11.6 0.2 0.18 11.1 0.2 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV VAPB_antitox PF02697.14 gi|307595088|ref|YP_003901405.1| - 0.015 16.0 1.8 0.023 15.5 1.8 1.3 1 0 0 1 1 1 0 Putative antitoxin RHH_3 PF12651.7 gi|307595088|ref|YP_003901405.1| - 0.097 12.6 1.1 0.7 9.9 0.1 2.2 2 1 0 2 2 2 0 Ribbon-helix-helix domain Helicase_RecD PF05127.14 gi|307595089|ref|YP_003901406.1| - 3.6e-57 193.1 0.0 5.9e-57 192.4 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|307595089|ref|YP_003901406.1| - 3.6e-43 147.6 0.0 5e-29 101.3 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|307595089|ref|YP_003901406.1| - 2.4e-27 94.7 0.0 1.1e-26 92.6 0.0 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|307595089|ref|YP_003901406.1| - 3.1e-06 27.4 0.0 9.3e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|307595089|ref|YP_003901406.1| - 0.0021 18.5 0.0 0.0063 16.9 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TniB PF05621.11 gi|307595089|ref|YP_003901406.1| - 0.0042 16.5 0.0 0.0088 15.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein tRNA_bind_2 PF13725.6 gi|307595089|ref|YP_003901406.1| - 0.0057 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_16 PF13191.6 gi|307595089|ref|YP_003901406.1| - 0.007 16.8 0.0 0.028 14.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Acetyltransf_10 PF13673.7 gi|307595089|ref|YP_003901406.1| - 0.011 15.6 0.0 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|307595089|ref|YP_003901406.1| - 0.05 13.6 0.1 0.28 11.2 0.0 2.1 2 0 0 2 2 2 0 FR47-like protein Acetyltransf_9 PF13527.7 gi|307595089|ref|YP_003901406.1| - 0.067 13.3 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA_30 PF13604.6 gi|307595089|ref|YP_003901406.1| - 0.2 11.4 0.0 1.2 8.8 0.0 2.1 1 1 0 2 2 2 0 AAA domain Proton_antipo_M PF00361.20 gi|307595091|ref|YP_003901408.1| - 1.9e-34 119.2 29.7 1.9e-34 119.2 29.7 1.9 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|307595092|ref|YP_003901409.1| - 1.5e-33 116.3 28.9 1.2e-28 100.2 25.5 3.5 2 1 0 2 2 2 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|307595092|ref|YP_003901409.1| - 0.00049 20.1 3.2 0.00049 20.1 3.2 3.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LUD_dom PF02589.15 gi|307595093|ref|YP_003901410.1| - 2.1e-46 158.1 0.0 2.9e-46 157.6 0.0 1.2 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|307595093|ref|YP_003901410.1| - 2.2e-09 37.6 0.8 3.9e-09 36.8 0.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307595093|ref|YP_003901410.1| - 3.3e-08 33.9 3.5 6.1e-07 29.9 5.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307595093|ref|YP_003901410.1| - 3e-07 30.9 4.3 5.4e-07 30.1 4.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307595093|ref|YP_003901410.1| - 4.4e-05 23.5 8.6 0.018 15.2 10.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307595093|ref|YP_003901410.1| - 0.00014 21.5 8.1 0.0029 17.4 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307595093|ref|YP_003901410.1| - 0.00039 20.5 4.6 0.0038 17.4 5.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307595093|ref|YP_003901410.1| - 0.00059 19.8 6.6 0.005 16.9 0.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307595093|ref|YP_003901410.1| - 0.0021 18.1 9.2 0.045 13.9 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|307595093|ref|YP_003901410.1| - 0.014 15.2 1.4 0.082 12.7 0.0 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|307595093|ref|YP_003901410.1| - 0.042 14.0 1.6 0.87 9.8 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307595093|ref|YP_003901410.1| - 0.045 14.7 8.7 0.33 11.9 8.7 2.2 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|307595093|ref|YP_003901410.1| - 0.11 13.4 5.3 0.18 12.6 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307595093|ref|YP_003901410.1| - 0.22 12.1 6.7 0.66 10.6 1.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307595093|ref|YP_003901410.1| - 0.54 10.4 6.1 1.4 9.1 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307595093|ref|YP_003901410.1| - 3.2 8.4 5.7 9.8 6.8 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I AIRS_C PF02769.22 gi|307595094|ref|YP_003901411.1| - 9e-22 77.9 0.2 1.4e-21 77.3 0.2 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|307595094|ref|YP_003901411.1| - 8.3e-13 48.8 0.2 2.3e-12 47.4 0.2 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF2007 PF09413.10 gi|307595094|ref|YP_003901411.1| - 0.0032 17.6 1.3 2.1 8.5 0.1 3.1 3 0 0 3 3 3 2 Putative prokaryotic signal transducing protein PALP PF00291.25 gi|307595095|ref|YP_003901412.1| - 6.7e-89 298.2 5.0 8.1e-89 297.9 5.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|307595095|ref|YP_003901412.1| - 9.1e-09 34.9 0.1 3.5e-08 33.1 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|307595095|ref|YP_003901412.1| - 0.0026 17.7 0.0 0.0077 16.2 0.0 1.9 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|307595095|ref|YP_003901412.1| - 0.046 14.3 0.1 0.27 11.8 0.0 2.4 3 0 0 3 3 3 0 ACT domain M20_dimer PF07687.14 gi|307595095|ref|YP_003901412.1| - 0.047 13.6 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 Peptidase dimerisation domain Radical_SAM PF04055.21 gi|307595095|ref|YP_003901412.1| - 0.13 12.6 0.0 23 5.3 0.0 3.1 3 0 0 3 3 3 0 Radical SAM superfamily Lactamase_B_3 PF13483.6 gi|307595095|ref|YP_003901412.1| - 0.15 11.9 0.0 0.42 10.5 0.0 1.7 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Ribonuc_L-PSP PF01042.21 gi|307595096|ref|YP_003901413.1| - 2.5e-40 137.3 0.0 2.7e-40 137.1 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Exo5 PF09810.9 gi|307595097|ref|YP_003901414.1| - 6.7e-11 42.3 0.5 0.00054 19.6 0.3 3.0 2 1 0 3 3 3 2 Exonuclease V - a 5' deoxyribonuclease PDDEXK_1 PF12705.7 gi|307595097|ref|YP_003901414.1| - 0.00017 21.6 0.0 0.00057 19.9 0.0 1.7 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily HSDR_N PF04313.14 gi|307595097|ref|YP_003901414.1| - 0.0067 16.4 0.1 0.02 14.9 0.0 1.6 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DivIVA PF05103.13 gi|307595098|ref|YP_003901415.1| - 0.023 14.8 0.5 0.04 14.0 0.5 1.5 1 0 0 1 1 1 0 DivIVA protein MoeA_N PF03453.17 gi|307595099|ref|YP_003901416.1| - 3e-39 134.3 0.0 4.7e-39 133.7 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|307595099|ref|YP_003901416.1| - 2.1e-26 92.3 0.0 3.4e-26 91.6 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|307595099|ref|YP_003901416.1| - 1.5e-15 57.1 0.1 3.8e-15 55.8 0.1 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) NurA PF09376.10 gi|307595101|ref|YP_003901418.1| - 1.5e-23 83.7 2.8 1.2e-22 80.8 2.8 2.1 1 1 0 1 1 1 1 NurA domain Sec61_beta PF03911.16 gi|307595102|ref|YP_003901419.1| - 0.48 10.5 4.9 0.79 9.8 4.9 1.3 1 0 0 1 1 1 0 Sec61beta family Thioredoxin_3 PF13192.6 gi|307595103|ref|YP_003901420.1| - 3.9e-09 36.4 0.0 1.1e-08 35.0 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|307595103|ref|YP_003901420.1| - 6e-08 32.8 0.0 2.7e-07 30.7 0.0 2.1 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|307595103|ref|YP_003901420.1| - 0.0011 19.1 0.0 0.021 15.0 0.0 2.5 2 0 0 2 2 2 1 Thioredoxin YdjO PF14169.6 gi|307595103|ref|YP_003901420.1| - 0.032 14.0 0.1 1.9 8.3 0.0 3.1 3 0 0 3 3 3 0 Cold-inducible protein YdjO Radical_SAM PF04055.21 gi|307595104|ref|YP_003901421.1| - 6.9e-14 52.6 0.0 1.7e-13 51.3 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|307595104|ref|YP_003901421.1| - 1.9e-05 24.8 0.2 6e-05 23.2 0.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif T2SSK PF03934.13 gi|307595104|ref|YP_003901421.1| - 0.25 10.7 0.0 0.43 9.9 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K HEPN PF05168.14 gi|307595105|ref|YP_003901422.1| - 5.8e-34 116.7 0.4 6.5e-34 116.6 0.4 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|307595105|ref|YP_003901422.1| - 2.2e-05 24.3 0.1 4.3e-05 23.4 0.1 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Sigma70_ner PF04546.13 gi|307595105|ref|YP_003901422.1| - 0.049 13.5 0.0 0.09 12.6 0.0 1.5 2 0 0 2 2 2 0 Sigma-70, non-essential region HEPN_AbiV PF18728.1 gi|307595105|ref|YP_003901422.1| - 0.2 11.8 1.2 0.52 10.5 0.8 1.8 2 0 0 2 2 2 0 AbiV Polbeta PF18765.1 gi|307595106|ref|YP_003901423.1| - 4.8e-08 33.0 0.1 7.6e-08 32.3 0.1 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|307595106|ref|YP_003901423.1| - 4.9e-08 33.2 0.0 7.2e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.13 gi|307595106|ref|YP_003901423.1| - 0.0032 17.3 0.0 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 P5CR_dimer PF14748.6 gi|307595107|ref|YP_003901424.1| - 0.012 15.8 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation Baculo_PEP_C PF04513.12 gi|307595109|ref|YP_003901426.1| - 2.4e-05 24.4 0.0 3.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus XhlA PF10779.9 gi|307595109|ref|YP_003901426.1| - 0.00054 20.1 0.8 0.00054 20.1 0.8 2.3 3 1 0 3 3 2 1 Haemolysin XhlA DUF5082 PF16888.5 gi|307595109|ref|YP_003901426.1| - 0.00079 19.7 0.1 0.0016 18.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5082) Prefoldin_2 PF01920.20 gi|307595109|ref|YP_003901426.1| - 0.0013 18.7 0.3 0.0013 18.7 0.3 1.7 2 0 0 2 2 1 1 Prefoldin subunit DUF1664 PF07889.12 gi|307595109|ref|YP_003901426.1| - 0.0019 18.2 0.3 0.011 15.8 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) ABC_tran_CTD PF16326.5 gi|307595109|ref|YP_003901426.1| - 0.0035 17.6 1.4 0.034 14.4 0.1 2.9 2 1 0 2 2 2 1 ABC transporter C-terminal domain DUF4315 PF14193.6 gi|307595109|ref|YP_003901426.1| - 0.0039 17.2 2.3 2.5 8.2 0.1 3.3 3 2 0 3 3 3 1 Domain of unknown function (DUF4315) HSBP1 PF06825.12 gi|307595109|ref|YP_003901426.1| - 0.012 15.5 5.9 0.018 14.9 1.1 3.0 2 1 1 3 3 3 0 Heat shock factor binding protein 1 FliD_C PF07195.12 gi|307595109|ref|YP_003901426.1| - 0.014 14.8 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Tropomyosin PF00261.20 gi|307595109|ref|YP_003901426.1| - 0.015 14.7 0.8 0.032 13.6 0.8 1.6 1 0 0 1 1 1 0 Tropomyosin Fzo_mitofusin PF04799.13 gi|307595109|ref|YP_003901426.1| - 0.016 14.8 0.2 0.029 13.9 0.2 1.4 1 0 0 1 1 1 0 fzo-like conserved region DUF4988 PF16378.5 gi|307595109|ref|YP_003901426.1| - 0.016 14.9 0.3 0.028 14.1 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function CLZ PF16526.5 gi|307595109|ref|YP_003901426.1| - 0.017 15.4 0.8 0.066 13.6 0.8 1.9 1 1 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Dynactin_p22 PF07426.11 gi|307595109|ref|YP_003901426.1| - 0.024 14.5 0.3 0.024 14.5 0.3 1.7 2 0 0 2 2 1 0 Dynactin subunit p22 Tektin PF03148.14 gi|307595109|ref|YP_003901426.1| - 0.027 13.3 0.2 0.038 12.7 0.2 1.2 1 0 0 1 1 1 0 Tektin family CdvA PF18822.1 gi|307595109|ref|YP_003901426.1| - 0.029 14.2 0.8 0.082 12.7 0.2 1.9 2 0 0 2 2 2 0 CdvA-like coiled-coil domain DASH_Spc19 PF08287.11 gi|307595109|ref|YP_003901426.1| - 0.03 14.2 0.2 0.089 12.7 0.4 1.6 2 0 0 2 2 2 0 Spc19 Fib_alpha PF08702.10 gi|307595109|ref|YP_003901426.1| - 0.031 14.5 0.8 0.045 13.9 0.2 1.5 2 0 0 2 2 1 0 Fibrinogen alpha/beta chain family Mistic PF11458.8 gi|307595109|ref|YP_003901426.1| - 0.036 14.0 0.0 0.078 13.0 0.0 1.5 1 0 0 1 1 1 0 Membrane-integrating protein Mistic DUF4164 PF13747.6 gi|307595109|ref|YP_003901426.1| - 0.051 13.9 1.4 0.051 13.9 1.4 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4164) DUF3287 PF11690.8 gi|307595109|ref|YP_003901426.1| - 0.051 13.3 0.7 0.24 11.1 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3287) TMF_DNA_bd PF12329.8 gi|307595109|ref|YP_003901426.1| - 0.058 13.4 1.6 0.13 12.2 1.6 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Tropomyosin_1 PF12718.7 gi|307595109|ref|YP_003901426.1| - 0.065 13.4 0.1 0.13 12.5 0.1 1.5 1 0 0 1 1 1 0 Tropomyosin like FlaC_arch PF05377.11 gi|307595109|ref|YP_003901426.1| - 0.092 13.2 1.1 0.092 13.2 1.1 2.9 3 1 1 4 4 2 0 Flagella accessory protein C (FlaC) Med4 PF10018.9 gi|307595109|ref|YP_003901426.1| - 0.098 12.3 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4795 PF16043.5 gi|307595109|ref|YP_003901426.1| - 0.12 11.9 0.4 0.17 11.5 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Tnp_22_trimer PF17489.2 gi|307595109|ref|YP_003901426.1| - 0.18 11.8 4.3 1.5 8.9 1.2 3.1 1 1 1 2 2 2 0 L1 transposable element trimerization domain YvrJ PF12841.7 gi|307595109|ref|YP_003901426.1| - 0.31 10.6 2.0 3 7.4 0.2 3.1 2 1 1 3 3 3 0 YvrJ protein family TRAF_BIRC3_bd PF16673.5 gi|307595109|ref|YP_003901426.1| - 0.36 10.6 4.7 0.37 10.6 0.5 3.0 2 2 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain DUF1192 PF06698.11 gi|307595109|ref|YP_003901426.1| - 0.45 10.6 3.6 16 5.7 0.1 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1192) FYVE_2 PF02318.16 gi|307595109|ref|YP_003901426.1| - 0.6 10.3 2.2 5.6 7.2 0.1 2.2 2 0 0 2 2 2 0 FYVE-type zinc finger BRI3BP PF14965.6 gi|307595109|ref|YP_003901426.1| - 4.4 6.8 7.1 1.8 8.1 1.0 3.2 2 1 0 3 3 3 0 Negative regulator of p53/TP53 GreA_GreB_N PF03449.15 gi|307595109|ref|YP_003901426.1| - 6.4 7.0 7.4 6.4 7.0 0.3 3.5 2 1 2 4 4 4 0 Transcription elongation factor, N-terminal MarC PF01914.17 gi|307595111|ref|YP_003901428.1| - 8.8e-34 116.7 16.4 9.9e-34 116.5 16.4 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF3810 PF12725.7 gi|307595111|ref|YP_003901428.1| - 5.3 6.3 5.2 0.73 9.1 1.3 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) DUF202 PF02656.15 gi|307595111|ref|YP_003901428.1| - 9.7 6.7 9.2 0.59 10.6 1.6 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Meth_synt_2 PF01717.18 gi|307595112|ref|YP_003901429.1| - 1.2e-31 110.2 0.0 2.2e-18 66.6 0.1 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|307595112|ref|YP_003901429.1| - 1.5e-08 34.5 0.0 0.017 14.7 0.0 3.2 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain tRNA-synt_2 PF00152.20 gi|307595113|ref|YP_003901430.1| - 2e-57 194.6 0.0 2.5e-57 194.3 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) GATase_3 PF07685.14 gi|307595114|ref|YP_003901431.1| - 1.4e-36 126.0 0.0 2.2e-36 125.3 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|307595114|ref|YP_003901431.1| - 4.7e-19 68.7 0.0 7.9e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|307595114|ref|YP_003901431.1| - 3.1e-14 53.3 0.0 3.9e-13 49.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|307595114|ref|YP_003901431.1| - 0.013 15.4 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B GATase_5 PF13507.6 gi|307595114|ref|YP_003901431.1| - 0.14 11.2 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain MarR_2 PF12802.7 gi|307595115|ref|YP_003901432.1| - 2e-12 46.8 0.6 3.5e-12 46.0 0.6 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|307595115|ref|YP_003901432.1| - 4.2e-09 35.8 0.8 7.4e-09 35.0 0.8 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|307595115|ref|YP_003901432.1| - 2.3e-08 33.8 0.3 4.4e-08 32.9 0.3 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|307595115|ref|YP_003901432.1| - 9.6e-07 28.7 0.8 1.8e-06 27.8 0.8 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|307595115|ref|YP_003901432.1| - 0.00027 21.0 1.1 0.00055 20.0 1.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|307595115|ref|YP_003901432.1| - 0.00036 20.4 0.2 0.00063 19.6 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|307595115|ref|YP_003901432.1| - 0.00051 19.5 1.2 0.0013 18.2 1.2 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.10 gi|307595115|ref|YP_003901432.1| - 0.00054 19.7 0.2 0.00098 18.9 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|307595115|ref|YP_003901432.1| - 0.00092 19.1 0.6 0.0017 18.2 0.6 1.4 1 0 0 1 1 1 1 HTH domain AbiEi_4 PF13338.6 gi|307595115|ref|YP_003901432.1| - 0.0016 18.5 2.0 0.0038 17.3 2.0 1.7 1 1 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin Crp PF00325.20 gi|307595115|ref|YP_003901432.1| - 0.0019 17.8 0.2 0.0038 16.8 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_27 PF13463.6 gi|307595115|ref|YP_003901432.1| - 0.0026 18.2 0.2 0.0045 17.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|307595115|ref|YP_003901432.1| - 0.0051 16.6 0.3 0.0051 16.6 0.3 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain FaeA PF04703.12 gi|307595115|ref|YP_003901432.1| - 0.0052 17.1 0.1 0.011 16.1 0.1 1.7 1 0 0 1 1 1 1 FaeA-like protein HTH_20 PF12840.7 gi|307595115|ref|YP_003901432.1| - 0.007 16.4 0.2 0.015 15.4 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|307595115|ref|YP_003901432.1| - 0.0093 16.4 0.1 0.021 15.3 0.1 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_36 PF13730.6 gi|307595115|ref|YP_003901432.1| - 0.016 15.1 0.1 0.039 13.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|307595115|ref|YP_003901432.1| - 0.017 14.9 0.2 0.028 14.2 0.2 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_23 PF13384.6 gi|307595115|ref|YP_003901432.1| - 0.017 14.9 1.2 0.023 14.5 0.4 1.7 2 0 0 2 2 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|307595115|ref|YP_003901432.1| - 0.018 15.1 0.4 0.033 14.2 0.4 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Penicillinase_R PF03965.16 gi|307595115|ref|YP_003901432.1| - 0.026 14.9 0.1 0.04 14.3 0.1 1.2 1 0 0 1 1 1 0 Penicillinase repressor RNA_pol_Rpc34 PF05158.12 gi|307595115|ref|YP_003901432.1| - 0.033 13.6 0.1 0.039 13.3 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit GntR PF00392.21 gi|307595115|ref|YP_003901432.1| - 0.057 13.1 1.0 0.11 12.2 1.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family KORA PF16509.5 gi|307595115|ref|YP_003901432.1| - 0.09 13.1 0.1 0.19 12.0 0.1 1.6 1 1 0 1 1 1 0 TrfB plasmid transcriptional repressor Mit_proteolip PF08039.11 gi|307595115|ref|YP_003901432.1| - 0.11 12.9 0.3 0.27 11.7 0.3 1.6 1 0 0 1 1 1 0 Mitochondrial proteolipid HTH_45 PF14947.6 gi|307595116|ref|YP_003901433.1| - 1.5e-09 37.7 0.0 2.2e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Sulfolobus_pRN PF05584.11 gi|307595116|ref|YP_003901433.1| - 0.00044 20.2 0.2 0.001 19.0 0.1 1.6 1 1 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_Crp_2 PF13545.6 gi|307595116|ref|YP_003901433.1| - 0.0069 16.3 0.0 0.0096 15.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|307595116|ref|YP_003901433.1| - 0.016 15.5 0.0 0.089 13.2 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator TrmB PF01978.19 gi|307595116|ref|YP_003901433.1| - 0.064 13.2 0.0 0.13 12.2 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|307595116|ref|YP_003901433.1| - 0.073 13.0 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4382 PF14321.6 gi|307595117|ref|YP_003901434.1| - 4.4e-22 78.8 0.1 5.3e-22 78.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) AA_permease_2 PF13520.6 gi|307595118|ref|YP_003901435.1| - 1.3e-40 139.5 50.4 1.7e-40 139.1 50.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|307595118|ref|YP_003901435.1| - 4.1e-28 98.2 48.9 7.8e-28 97.3 48.4 1.6 1 1 0 1 1 1 1 Amino acid permease Dpy-30 PF05186.13 gi|307595118|ref|YP_003901435.1| - 0.19 11.5 0.2 1.2 8.9 0.0 2.5 3 0 0 3 3 3 0 Dpy-30 motif TrkA_N PF02254.18 gi|307595119|ref|YP_003901436.1| - 2.9e-14 53.3 0.5 4.7e-14 52.6 0.5 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|307595119|ref|YP_003901436.1| - 2.5e-11 43.2 0.2 7.3e-11 41.7 0.2 1.8 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|307595119|ref|YP_003901436.1| - 0.0028 18.1 0.1 0.013 16.0 0.1 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|307595119|ref|YP_003901436.1| - 0.036 14.6 0.0 0.065 13.7 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain PfkB PF00294.24 gi|307595120|ref|YP_003901437.1| - 4.6e-53 180.5 0.0 5.2e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|307595120|ref|YP_003901437.1| - 0.0012 18.3 0.0 0.0018 17.7 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase GrpE PF01025.19 gi|307595120|ref|YP_003901437.1| - 0.12 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 GrpE Ion_trans_2 PF07885.16 gi|307595122|ref|YP_003901439.1| - 2.8e-16 59.3 4.9 6.3e-16 58.1 4.9 1.6 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.18 gi|307595122|ref|YP_003901439.1| - 1.3e-09 38.3 2.0 2.6e-09 37.3 0.8 2.0 1 1 1 2 2 2 1 TrkA-N domain Ion_trans PF00520.31 gi|307595122|ref|YP_003901439.1| - 5.1e-09 35.7 6.4 8e-09 35.1 6.4 1.2 1 0 0 1 1 1 1 Ion transport protein TrkA_C PF02080.21 gi|307595122|ref|YP_003901439.1| - 4.1e-06 26.5 1.0 1.7e-05 24.6 0.2 2.2 2 0 0 2 2 2 1 TrkA-C domain Castor_Poll_mid PF06241.12 gi|307595122|ref|YP_003901439.1| - 1.6e-05 24.8 0.9 5.5e-05 23.1 0.2 2.2 3 0 0 3 3 3 1 Castor and Pollux, part of voltage-gated ion channel IRK PF01007.20 gi|307595122|ref|YP_003901439.1| - 0.013 15.4 0.1 0.022 14.5 0.1 1.3 1 0 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain PmrD PF11183.8 gi|307595122|ref|YP_003901439.1| - 0.018 15.2 0.3 2.7 8.2 0.0 2.6 2 0 0 2 2 2 0 Polymyxin resistance protein PmrD BK_channel_a PF03493.18 gi|307595122|ref|YP_003901439.1| - 0.02 15.0 0.1 2.2 8.5 0.0 2.5 1 1 1 2 2 2 0 Calcium-activated BK potassium channel alpha subunit MpPF26 PF07666.11 gi|307595122|ref|YP_003901439.1| - 0.17 12.0 5.0 0.38 10.9 4.5 1.9 1 1 0 1 1 1 0 M penetrans paralogue family 26 HEM4 PF02602.15 gi|307595123|ref|YP_003901440.1| - 2e-30 105.8 0.0 2.5e-30 105.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD POC1 PF10450.9 gi|307595123|ref|YP_003901440.1| - 0.0084 15.1 0.1 0.012 14.6 0.1 1.2 1 0 0 1 1 1 1 POC1 chaperone GDP_Man_Dehyd PF16363.5 gi|307595124|ref|YP_003901441.1| - 8.6e-53 179.9 0.0 1e-52 179.6 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|307595124|ref|YP_003901441.1| - 8.9e-52 175.9 0.0 1.1e-51 175.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|307595124|ref|YP_003901441.1| - 9.4e-17 61.1 0.0 5.6e-16 58.5 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|307595124|ref|YP_003901441.1| - 1.2e-15 57.4 0.0 1.7e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|307595124|ref|YP_003901441.1| - 2.3e-15 56.3 0.0 3.2e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|307595124|ref|YP_003901441.1| - 3.8e-11 42.7 1.3 7.2e-07 28.6 0.0 2.5 1 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|307595124|ref|YP_003901441.1| - 1.5e-05 25.0 0.0 2.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|307595124|ref|YP_003901441.1| - 0.00019 21.0 0.0 0.0092 15.5 0.0 2.5 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|307595124|ref|YP_003901441.1| - 0.0049 16.5 0.3 0.033 13.7 0.1 2.1 2 0 0 2 2 2 1 NmrA-like family UPF0146 PF03686.13 gi|307595124|ref|YP_003901441.1| - 0.011 15.6 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) KR PF08659.10 gi|307595124|ref|YP_003901441.1| - 0.026 14.4 0.0 0.072 13.0 0.0 1.7 2 0 0 2 2 2 0 KR domain CbiX PF01903.17 gi|307595127|ref|YP_003901444.1| - 0.034 14.5 0.0 1 9.8 0.0 2.4 2 0 0 2 2 2 0 CbiX CobD_Cbib PF03186.13 gi|307595128|ref|YP_003901445.1| - 6.5e-77 258.4 1.4 8e-77 258.2 1.4 1.1 1 0 0 1 1 1 1 CobD/Cbib protein AsnC_trans_reg PF01037.21 gi|307595129|ref|YP_003901446.1| - 8.3e-10 38.5 0.2 1.5e-09 37.7 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_Crp_2 PF13545.6 gi|307595129|ref|YP_003901446.1| - 1.2e-07 31.5 0.1 2.8e-07 30.4 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|307595129|ref|YP_003901446.1| - 7.1e-07 29.2 0.2 4.3e-06 26.7 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|307595129|ref|YP_003901446.1| - 1.1e-06 28.4 0.5 5.9e-06 26.0 0.2 2.4 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|307595129|ref|YP_003901446.1| - 2e-06 27.6 0.5 6.4e-06 26.0 0.2 2.0 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|307595129|ref|YP_003901446.1| - 1.9e-05 24.1 0.1 0.00014 21.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding RP-C PF03428.13 gi|307595129|ref|YP_003901446.1| - 0.00076 19.2 0.1 0.0017 18.1 0.1 1.5 1 1 0 1 1 1 1 Replication protein C N-terminal domain HTH_11 PF08279.12 gi|307595129|ref|YP_003901446.1| - 0.001 19.0 0.9 0.011 15.6 0.4 2.8 2 1 0 2 2 2 1 HTH domain LexA_DNA_bind PF01726.16 gi|307595129|ref|YP_003901446.1| - 0.002 17.9 0.7 0.0059 16.4 0.7 1.8 1 1 0 1 1 1 1 LexA DNA binding domain MarR PF01047.22 gi|307595129|ref|YP_003901446.1| - 0.0071 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|307595129|ref|YP_003901446.1| - 0.0074 16.2 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|307595129|ref|YP_003901446.1| - 0.0083 15.8 0.2 0.022 14.5 0.2 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) HTH_10 PF04967.12 gi|307595129|ref|YP_003901446.1| - 0.0086 15.9 1.5 0.5 10.2 0.0 2.8 3 0 0 3 3 3 1 HTH DNA binding domain HTH_8 PF02954.19 gi|307595129|ref|YP_003901446.1| - 0.016 15.0 0.3 0.056 13.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_34 PF13601.6 gi|307595129|ref|YP_003901446.1| - 0.019 15.1 0.0 0.04 14.1 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|307595129|ref|YP_003901446.1| - 0.055 13.6 0.0 0.12 12.6 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|307595129|ref|YP_003901446.1| - 0.12 12.3 3.7 0.61 10.0 0.3 3.3 3 1 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF357 PF04010.13 gi|307595130|ref|YP_003901447.1| - 3e-19 68.9 0.7 4.7e-19 68.2 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|307595130|ref|YP_003901447.1| - 2.4e-09 37.5 0.0 5.9e-09 36.3 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase-like DUF5388 PF17363.2 gi|307595130|ref|YP_003901447.1| - 0.15 12.3 0.2 0.48 10.7 0.1 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5388) Zn_peptidase_2 PF04298.12 gi|307595131|ref|YP_003901448.1| - 0.44 9.9 3.8 0.57 9.5 3.8 1.2 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase PaaB PF06243.11 gi|307595132|ref|YP_003901449.1| - 0.16 12.3 0.0 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 Phenylacetic acid degradation B tRNA-synt_2b PF00587.25 gi|307595133|ref|YP_003901450.1| - 2.8e-27 95.8 0.0 4.6e-27 95.1 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|307595133|ref|YP_003901450.1| - 5.3e-23 81.0 0.2 1.2e-22 79.9 0.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|307595133|ref|YP_003901450.1| - 3.3e-11 43.2 0.0 5.4e-10 39.3 0.0 2.4 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal WIYLD PF10440.9 gi|307595133|ref|YP_003901450.1| - 0.1 12.4 0.0 1 9.2 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-binding WIYLD domain Fer4 PF00037.27 gi|307595134|ref|YP_003901451.1| - 3.5e-11 42.4 8.9 5.5e-06 26.0 3.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307595134|ref|YP_003901451.1| - 3.7e-11 43.4 32.5 1e-06 29.2 12.0 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307595134|ref|YP_003901451.1| - 1.7e-09 37.7 18.6 3.7e-07 30.2 9.2 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307595134|ref|YP_003901451.1| - 2.4e-09 36.9 9.0 0.0003 20.7 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307595134|ref|YP_003901451.1| - 6.6e-08 32.2 10.4 0.00048 20.1 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307595134|ref|YP_003901451.1| - 5.8e-07 29.5 23.5 6.5e-05 23.0 11.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307595134|ref|YP_003901451.1| - 8.4e-07 29.8 7.3 0.0014 19.5 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|307595134|ref|YP_003901451.1| - 1.1e-06 29.1 5.8 0.004 17.7 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307595134|ref|YP_003901451.1| - 1.6e-06 28.1 20.5 0.00016 21.7 11.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307595134|ref|YP_003901451.1| - 7.2e-05 23.2 13.8 0.024 15.1 2.6 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|307595134|ref|YP_003901451.1| - 0.00022 22.0 7.7 0.037 14.9 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307595134|ref|YP_003901451.1| - 0.00039 20.9 6.8 0.018 15.5 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|307595134|ref|YP_003901451.1| - 0.0027 18.1 10.7 0.032 14.7 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|307595134|ref|YP_003901451.1| - 0.0029 18.3 10.1 0.046 14.5 1.0 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|307595134|ref|YP_003901451.1| - 0.21 11.8 8.9 4.1 7.6 8.8 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|307595134|ref|YP_003901451.1| - 0.22 12.6 17.6 2.2 9.4 5.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain RIO1 PF01163.22 gi|307595136|ref|YP_003901453.1| - 0.00019 21.1 0.0 0.0003 20.4 0.0 1.3 1 0 0 1 1 1 1 RIO1 family FTA2 PF13095.6 gi|307595136|ref|YP_003901453.1| - 0.0061 16.2 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 Kinetochore Sim4 complex subunit FTA2 HTH_43 PF09904.9 gi|307595136|ref|YP_003901453.1| - 0.023 14.6 0.0 0.057 13.4 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn helix Choline_kinase PF01633.20 gi|307595136|ref|YP_003901453.1| - 0.13 11.8 0.0 0.41 10.2 0.0 1.6 1 1 1 2 2 2 0 Choline/ethanolamine kinase PUA PF01472.20 gi|307595137|ref|YP_003901454.1| - 9e-22 76.8 0.4 1.3e-21 76.3 0.4 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|307595137|ref|YP_003901454.1| - 7.6e-07 29.3 0.1 2.5e-06 27.7 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|307595137|ref|YP_003901454.1| - 0.0027 17.9 0.1 0.0041 17.3 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain tRNA_bind PF01588.20 gi|307595138|ref|YP_003901455.1| - 9.1e-27 93.0 0.0 1e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain Peptidase_M16 PF00675.20 gi|307595139|ref|YP_003901456.1| - 6.1e-20 71.7 0.0 1.1e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|307595139|ref|YP_003901456.1| - 1.2e-11 45.0 0.1 2.9e-11 43.7 0.0 1.6 2 0 0 2 2 2 1 Peptidase M16 inactive domain SWC7 PF17330.2 gi|307595139|ref|YP_003901456.1| - 0.26 11.4 1.4 41 4.3 0.0 3.2 3 1 1 4 4 4 0 SWR1 chromatin-remodelling complex, sub-unit Swc7 SIR2 PF02146.17 gi|307595140|ref|YP_003901457.1| - 4.6e-50 170.0 0.0 5.7e-50 169.7 0.0 1.1 1 0 0 1 1 1 1 Sir2 family ADK_lid PF05191.14 gi|307595140|ref|YP_003901457.1| - 7e-05 22.7 0.5 0.00012 21.9 0.5 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid TPP_enzyme_M PF00205.22 gi|307595140|ref|YP_003901457.1| - 0.00012 21.8 0.0 0.0065 16.2 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Nudix_N_2 PF14803.6 gi|307595140|ref|YP_003901457.1| - 0.2 11.6 1.2 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Glyco_transf_4 PF13439.6 gi|307595141|ref|YP_003901458.1| - 2.4e-11 43.9 0.7 3.1e-11 43.6 0.7 1.1 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|307595141|ref|YP_003901458.1| - 3.4e-07 30.9 0.0 4.3e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|307595141|ref|YP_003901458.1| - 6.6e-07 29.3 0.3 0.0053 16.5 0.2 2.2 1 1 1 2 2 2 2 Starch synthase catalytic domain Rrf2 PF02082.20 gi|307595142|ref|YP_003901459.1| - 0.00017 21.9 0.2 0.00024 21.4 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|307595142|ref|YP_003901459.1| - 0.00025 20.7 0.4 0.00061 19.4 0.4 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RPA_C PF08784.11 gi|307595142|ref|YP_003901459.1| - 0.0019 18.8 0.1 0.0023 18.5 0.1 1.1 1 0 0 1 1 1 1 Replication protein A C terminal TRM PF02005.16 gi|307595142|ref|YP_003901459.1| - 0.015 14.5 0.3 0.016 14.4 0.3 1.0 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Rad60-SLD PF11976.8 gi|307595142|ref|YP_003901459.1| - 0.036 13.9 0.4 0.06 13.2 0.4 1.4 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like HTH_Crp_2 PF13545.6 gi|307595142|ref|YP_003901459.1| - 0.049 13.6 0.1 0.08 12.9 0.1 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|307595142|ref|YP_003901459.1| - 0.057 13.3 0.2 0.081 12.8 0.2 1.2 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|307595142|ref|YP_003901459.1| - 0.075 13.0 0.0 0.47 10.4 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_15 PF12324.8 gi|307595142|ref|YP_003901459.1| - 0.083 12.9 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Glyco_hydro_57 PF03065.15 gi|307595143|ref|YP_003901460.1| - 1.3e-34 119.9 1.0 1.5e-27 96.7 0.0 2.3 1 1 0 2 2 2 2 Glycosyl hydrolase family 57 Arrestin_C PF02752.22 gi|307595143|ref|YP_003901460.1| - 0.12 12.9 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain Amidohydro_1 PF01979.20 gi|307595144|ref|YP_003901461.1| - 7.7e-08 32.0 0.0 1.1e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|307595144|ref|YP_003901461.1| - 0.012 15.1 0.3 2.4 7.5 0.1 2.2 2 0 0 2 2 2 0 Amidohydrolase family Pyr_redox_2 PF07992.14 gi|307595145|ref|YP_003901462.1| - 0.029 13.6 0.0 0.04 13.1 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase VWA_CoxE PF05762.14 gi|307595146|ref|YP_003901463.1| - 0.0002 20.8 0.1 0.0041 16.5 0.0 2.4 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|307595146|ref|YP_003901463.1| - 0.0016 19.1 0.3 0.0084 16.7 0.3 2.2 1 1 0 1 1 1 1 von Willebrand factor type A domain RAI16-like PF10257.9 gi|307595146|ref|YP_003901463.1| - 0.085 11.7 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Retinoic acid induced 16-like protein PTPS PF01242.19 gi|307595147|ref|YP_003901464.1| - 1.3e-11 44.5 0.0 1.4e-11 44.4 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase TP_methylase PF00590.20 gi|307595148|ref|YP_003901465.1| - 4.7e-44 150.9 0.3 5.6e-44 150.6 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peptidase_M54 PF07998.11 gi|307595149|ref|YP_003901466.1| - 1.8e-27 96.6 0.0 2e-27 96.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|307595149|ref|YP_003901466.1| - 8.3e-05 22.5 0.0 9.6e-05 22.3 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.6 gi|307595149|ref|YP_003901466.1| - 0.00011 22.8 0.0 0.00013 22.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|307595149|ref|YP_003901466.1| - 0.0071 16.0 0.0 0.01 15.5 0.0 1.3 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|307595149|ref|YP_003901466.1| - 0.012 14.3 0.2 0.017 13.8 0.2 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_5 PF13688.6 gi|307595149|ref|YP_003901466.1| - 0.012 15.8 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_2 PF13574.6 gi|307595149|ref|YP_003901466.1| - 0.013 15.4 0.0 0.015 15.2 0.0 1.1 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|307595149|ref|YP_003901466.1| - 0.034 13.1 0.0 0.046 12.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 N6_N4_Mtase PF01555.18 gi|307595150|ref|YP_003901467.1| - 5e-05 23.1 0.0 8.7e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 DNA methylase MTS PF05175.14 gi|307595150|ref|YP_003901467.1| - 5.8e-05 22.7 0.0 0.00011 21.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain N6_Mtase PF02384.16 gi|307595150|ref|YP_003901467.1| - 0.0014 17.9 0.0 0.0037 16.6 0.0 1.7 2 1 0 2 2 2 1 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|307595150|ref|YP_003901467.1| - 0.0048 16.7 0.0 0.0074 16.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307595150|ref|YP_003901467.1| - 0.0094 16.6 0.0 0.019 15.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|307595150|ref|YP_003901467.1| - 0.094 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|307595150|ref|YP_003901467.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein DUF3853 PF12964.7 gi|307595151|ref|YP_003901468.1| - 0.012 15.7 0.0 0.013 15.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3853) DUF87 PF01935.17 gi|307595152|ref|YP_003901469.1| - 1.4e-15 58.0 0.1 3.8e-15 56.6 0.1 1.6 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|307595152|ref|YP_003901469.1| - 1.2e-08 34.3 0.0 0.00014 21.0 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|307595152|ref|YP_003901469.1| - 3.1e-08 33.0 0.0 6.7e-08 31.8 0.0 1.5 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|307595152|ref|YP_003901469.1| - 4.9e-08 32.6 0.1 3.5e-06 26.6 0.0 2.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|307595152|ref|YP_003901469.1| - 5.9e-06 26.6 3.4 0.012 15.9 0.3 3.1 2 1 0 2 2 2 2 AAA domain Zot PF05707.12 gi|307595152|ref|YP_003901469.1| - 7.9e-06 25.6 0.1 0.00011 21.9 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DUF853 PF05872.12 gi|307595152|ref|YP_003901469.1| - 4.5e-05 22.2 0.1 0.041 12.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|307595152|ref|YP_003901469.1| - 0.00012 22.1 0.0 0.052 13.6 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|307595152|ref|YP_003901469.1| - 0.00086 19.7 0.5 0.0048 17.3 0.5 2.3 1 1 0 1 1 1 1 AAA ATPase domain DEAD PF00270.29 gi|307595152|ref|YP_003901469.1| - 0.0012 18.7 0.5 0.38 10.5 0.5 2.5 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|307595152|ref|YP_003901469.1| - 0.0015 18.3 0.1 0.35 10.6 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA PF00004.29 gi|307595152|ref|YP_003901469.1| - 0.0016 18.9 0.5 0.45 10.9 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Septin PF00735.18 gi|307595152|ref|YP_003901469.1| - 0.0029 16.9 0.0 0.0042 16.4 0.0 1.3 1 0 0 1 1 1 1 Septin NACHT PF05729.12 gi|307595152|ref|YP_003901469.1| - 0.0031 17.5 0.0 0.0064 16.4 0.0 1.5 1 0 0 1 1 1 1 NACHT domain T2SSE PF00437.20 gi|307595152|ref|YP_003901469.1| - 0.0042 16.2 0.0 0.0097 15.0 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|307595152|ref|YP_003901469.1| - 0.0043 16.8 0.0 0.013 15.2 0.0 1.8 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_7 PF12775.7 gi|307595152|ref|YP_003901469.1| - 0.0045 16.5 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|307595152|ref|YP_003901469.1| - 0.0048 17.2 0.4 0.024 15.0 0.4 2.2 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|307595152|ref|YP_003901469.1| - 0.0067 15.9 0.4 0.055 12.9 0.0 2.5 4 0 0 4 4 3 1 PhoH-like protein AAA_14 PF13173.6 gi|307595152|ref|YP_003901469.1| - 0.0067 16.5 0.1 0.31 11.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 gi|307595152|ref|YP_003901469.1| - 0.008 16.0 0.1 0.017 14.9 0.1 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_29 PF13555.6 gi|307595152|ref|YP_003901469.1| - 0.013 15.2 0.1 0.043 13.6 0.0 1.9 2 0 0 2 2 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|307595152|ref|YP_003901469.1| - 0.017 15.7 0.6 0.043 14.3 0.6 1.8 1 1 0 1 1 1 0 ABC transporter DUF2075 PF09848.9 gi|307595152|ref|YP_003901469.1| - 0.017 14.4 0.5 1.2 8.3 0.1 2.5 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|307595152|ref|YP_003901469.1| - 0.019 14.7 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Pox_A32 PF04665.12 gi|307595152|ref|YP_003901469.1| - 0.027 13.9 2.5 0.11 12.0 0.1 2.6 3 0 0 3 3 3 0 Poxvirus A32 protein cobW PF02492.19 gi|307595152|ref|YP_003901469.1| - 0.033 13.8 0.1 0.077 12.6 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP-synt_ab PF00006.25 gi|307595152|ref|YP_003901469.1| - 0.034 13.8 0.0 0.073 12.7 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.15 gi|307595152|ref|YP_003901469.1| - 0.035 14.0 0.1 1.3 8.9 0.1 2.7 2 0 0 2 2 2 0 NTPase CLP1_P PF16575.5 gi|307595152|ref|YP_003901469.1| - 0.035 13.9 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RNA_helicase PF00910.22 gi|307595152|ref|YP_003901469.1| - 0.044 14.2 0.0 0.23 11.9 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Roc PF08477.13 gi|307595152|ref|YP_003901469.1| - 0.057 13.6 0.1 0.17 12.1 0.1 1.8 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ATPase_2 PF01637.18 gi|307595152|ref|YP_003901469.1| - 0.061 13.2 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|307595152|ref|YP_003901469.1| - 0.092 13.3 0.0 0.7 10.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|307595152|ref|YP_003901469.1| - 0.11 12.4 0.2 0.32 10.9 0.2 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|307595152|ref|YP_003901469.1| - 0.14 12.3 0.0 0.42 10.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain T4SS-DNA_transf PF02534.14 gi|307595152|ref|YP_003901469.1| - 0.19 10.5 0.0 0.29 9.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_23 PF13476.6 gi|307595152|ref|YP_003901469.1| - 0.23 11.9 0.0 2.8 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|307595153|ref|YP_003901470.1| - 5e-07 30.0 0.0 2.5e-06 27.7 0.1 2.0 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|307595153|ref|YP_003901470.1| - 6.2e-06 26.5 0.0 0.016 15.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.7 gi|307595153|ref|YP_003901470.1| - 9.7e-05 21.4 0.0 0.0019 17.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain ResIII PF04851.15 gi|307595153|ref|YP_003901470.1| - 0.00016 21.7 0.0 0.013 15.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_23 PF13476.6 gi|307595153|ref|YP_003901470.1| - 0.00035 21.1 0.0 0.00073 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|307595153|ref|YP_003901470.1| - 0.00036 20.0 0.0 0.00074 18.9 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|307595153|ref|YP_003901470.1| - 0.0012 19.3 0.0 0.0025 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|307595153|ref|YP_003901470.1| - 0.0012 19.3 0.0 0.011 16.2 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|307595153|ref|YP_003901470.1| - 0.0017 18.4 0.0 0.0037 17.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 gi|307595153|ref|YP_003901470.1| - 0.0017 17.3 0.1 0.01 14.8 0.0 2.1 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.16 gi|307595153|ref|YP_003901470.1| - 0.002 17.6 0.0 0.0072 15.8 0.0 1.8 2 0 0 2 2 2 1 PhoH-like protein ABC_tran PF00005.27 gi|307595153|ref|YP_003901470.1| - 0.0026 18.3 0.0 0.0048 17.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter RuvB_N PF05496.12 gi|307595153|ref|YP_003901470.1| - 0.003 17.3 0.0 0.0063 16.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|307595153|ref|YP_003901470.1| - 0.003 17.3 0.0 0.007 16.1 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein DEAD PF00270.29 gi|307595153|ref|YP_003901470.1| - 0.0037 17.0 0.0 0.13 12.0 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase NACHT PF05729.12 gi|307595153|ref|YP_003901470.1| - 0.0054 16.7 0.0 0.029 14.3 0.0 2.1 2 0 0 2 2 2 1 NACHT domain Sigma54_activat PF00158.26 gi|307595153|ref|YP_003901470.1| - 0.013 15.2 0.0 0.091 12.5 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF853 PF05872.12 gi|307595153|ref|YP_003901470.1| - 0.026 13.1 0.0 0.94 8.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) T4SS-DNA_transf PF02534.14 gi|307595153|ref|YP_003901470.1| - 0.026 13.3 0.0 0.054 12.3 0.0 1.5 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_29 PF13555.6 gi|307595153|ref|YP_003901470.1| - 0.028 14.1 0.0 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|307595153|ref|YP_003901470.1| - 0.029 14.0 0.0 0.08 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|307595153|ref|YP_003901470.1| - 0.031 13.5 0.0 0.49 9.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) T2SSE PF00437.20 gi|307595153|ref|YP_003901470.1| - 0.031 13.3 0.0 0.067 12.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein SRP54 PF00448.22 gi|307595153|ref|YP_003901470.1| - 0.032 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|307595153|ref|YP_003901470.1| - 0.051 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 gi|307595153|ref|YP_003901470.1| - 0.098 12.8 0.1 0.33 11.1 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.6 gi|307595153|ref|YP_003901470.1| - 0.11 12.2 0.0 0.47 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|307595153|ref|YP_003901470.1| - 0.12 12.4 0.2 4.7 7.3 0.0 2.7 3 0 0 3 3 2 0 AAA domain Mg_chelatase PF01078.21 gi|307595153|ref|YP_003901470.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|307595153|ref|YP_003901470.1| - 0.12 11.5 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain MeaB PF03308.16 gi|307595153|ref|YP_003901470.1| - 0.13 11.3 0.0 0.23 10.4 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|307595153|ref|YP_003901470.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|307595153|ref|YP_003901470.1| - 0.18 12.2 0.3 1.2 9.4 0.3 2.2 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|307595153|ref|YP_003901470.1| - 0.18 11.3 0.0 0.35 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Zot PF05707.12 gi|307595153|ref|YP_003901470.1| - 0.22 11.2 0.0 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF5313 PF17240.2 gi|307595153|ref|YP_003901470.1| - 8.2 6.9 8.3 0.2 12.1 0.4 2.2 2 0 0 2 2 1 0 Family of unknown function (DUF5313) AdoMet_dc PF02675.15 gi|307595154|ref|YP_003901471.1| - 1.2e-35 122.0 0.1 1.4e-35 121.8 0.1 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SIS PF01380.22 gi|307595155|ref|YP_003901472.1| - 3.7e-17 62.4 0.0 6.3e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|307595155|ref|YP_003901472.1| - 7.9e-11 42.1 2.3 1.7e-06 28.1 0.9 2.4 1 1 1 2 2 2 2 SIS domain Glyco_trans_1_4 PF13692.6 gi|307595155|ref|YP_003901472.1| - 0.022 15.2 0.1 0.038 14.4 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 PRMT5 PF05185.16 gi|307595155|ref|YP_003901472.1| - 0.025 14.4 2.4 0.75 9.6 0.1 2.3 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase Cas_Cas02710 PF09670.10 gi|307595155|ref|YP_003901472.1| - 0.046 12.5 0.0 0.059 12.2 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) LigB PF02900.18 gi|307595155|ref|YP_003901472.1| - 0.062 12.4 0.1 0.38 9.8 0.0 2.0 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase PhoH PF02562.16 gi|307595156|ref|YP_003901473.1| - 1.3e-50 171.7 0.0 1.7e-50 171.4 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|307595156|ref|YP_003901473.1| - 7.6e-08 32.1 5.0 7.5e-07 28.9 2.9 2.4 1 1 1 2 2 2 1 KH domain KH_5 PF13184.6 gi|307595156|ref|YP_003901473.1| - 3.5e-05 23.8 0.7 0.034 14.2 0.1 2.6 2 0 0 2 2 2 2 NusA-like KH domain KH_1 PF00013.29 gi|307595156|ref|YP_003901473.1| - 0.00022 21.0 0.6 0.0015 18.3 0.2 2.3 2 0 0 2 2 2 1 KH domain AAA_30 PF13604.6 gi|307595156|ref|YP_003901473.1| - 0.014 15.1 0.0 0.13 12.0 0.0 2.3 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|307595156|ref|YP_003901473.1| - 0.015 15.1 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|307595156|ref|YP_003901473.1| - 0.026 15.0 0.3 0.12 12.9 0.3 2.2 1 1 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 gi|307595156|ref|YP_003901473.1| - 0.16 12.2 1.1 1.3 9.3 1.1 2.2 1 1 0 1 1 1 0 AAA domain KH_4 PF13083.6 gi|307595156|ref|YP_003901473.1| - 0.25 11.2 2.9 0.57 10.1 1.3 2.4 2 1 1 3 3 3 0 KH domain LDcluster4 PF18306.1 gi|307595157|ref|YP_003901474.1| - 2.1e-14 53.4 0.0 2.4e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|307595157|ref|YP_003901474.1| - 0.0037 17.4 0.1 0.0076 16.4 0.1 1.6 1 1 1 2 2 2 1 Possible lysine decarboxylase LSDAT_prok PF18171.1 gi|307595157|ref|YP_003901474.1| - 0.0067 15.7 0.0 0.015 14.6 0.0 1.5 2 0 0 2 2 2 1 SLOG in TRPM, prokaryote Nuc_deoxyrib_tr PF05014.15 gi|307595157|ref|YP_003901474.1| - 0.18 11.8 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Cutinase PF01083.22 gi|307595157|ref|YP_003901474.1| - 0.22 11.4 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Cutinase NOG1_N PF17835.1 gi|307595158|ref|YP_003901475.1| - 1.3e-27 96.7 0.0 2e-27 96.1 0.0 1.2 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|307595158|ref|YP_003901475.1| - 1.1e-21 76.4 0.0 2.4e-21 75.3 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|307595158|ref|YP_003901475.1| - 8.3e-17 61.3 0.0 1.4e-16 60.6 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|307595158|ref|YP_003901475.1| - 3e-12 46.3 0.1 4.1e-12 45.9 0.1 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Ras PF00071.22 gi|307595158|ref|YP_003901475.1| - 0.00038 20.1 0.0 0.0011 18.6 0.0 1.7 1 1 0 1 1 1 1 Ras family RsgA_GTPase PF03193.16 gi|307595158|ref|YP_003901475.1| - 0.0029 17.5 0.0 1.3 8.9 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AIG1 PF04548.16 gi|307595158|ref|YP_003901475.1| - 0.013 14.8 0.1 0.037 13.4 0.0 1.8 1 1 1 2 2 2 0 AIG1 family PduV-EutP PF10662.9 gi|307595158|ref|YP_003901475.1| - 0.031 14.0 0.0 0.067 12.9 0.0 1.6 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|307595158|ref|YP_003901475.1| - 0.055 12.9 0.0 0.14 11.6 0.0 1.8 1 1 0 1 1 1 0 ADP-ribosylation factor family SRPRB PF09439.10 gi|307595158|ref|YP_003901475.1| - 0.091 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|307595158|ref|YP_003901475.1| - 0.16 12.0 0.7 2.9 7.9 0.0 2.4 1 1 1 2 2 2 0 Dynamin family DUF998 PF06197.13 gi|307595159|ref|YP_003901476.1| - 2.6e-20 72.8 19.2 3.2e-20 72.5 19.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF4690 PF15756.5 gi|307595160|ref|YP_003901477.1| - 0.27 11.9 2.5 0.72 10.5 2.5 1.7 1 0 0 1 1 1 0 Small Novel Rich in Cartilage MazE_antitoxin PF04014.18 gi|307595162|ref|YP_003901479.1| - 5.1e-09 35.9 0.4 3.3e-07 30.1 0.2 2.3 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|307595162|ref|YP_003901479.1| - 0.12 12.8 0.1 0.91 10.0 0.0 2.0 2 0 0 2 2 2 0 prlF antitoxin for toxin YhaV_toxin DUF2079 PF09852.9 gi|307595163|ref|YP_003901480.1| - 3e-52 178.0 38.6 5.1e-52 177.2 38.6 1.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2079) Metallophos PF00149.28 gi|307595164|ref|YP_003901481.1| - 6.7e-11 43.1 0.0 8.4e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|307595164|ref|YP_003901481.1| - 1.4e-08 35.1 0.0 3.2e-08 33.9 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Glyco_hydro_98C PF08307.11 gi|307595164|ref|YP_003901481.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 98 C-terminal domain Acetyltransf_1 PF00583.25 gi|307595165|ref|YP_003901482.1| - 2.7e-17 63.1 0.0 3.6e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|307595165|ref|YP_003901482.1| - 4.8e-11 42.9 0.0 7e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|307595165|ref|YP_003901482.1| - 8.2e-11 41.9 0.0 1e-10 41.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|307595165|ref|YP_003901482.1| - 5.1e-09 36.0 0.0 7.5e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|307595165|ref|YP_003901482.1| - 1.4e-05 25.1 0.0 8e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|307595165|ref|YP_003901482.1| - 3.1e-05 23.7 0.0 0.00092 18.9 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|307595165|ref|YP_003901482.1| - 0.00027 21.1 0.0 0.00039 20.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|307595165|ref|YP_003901482.1| - 0.00053 20.2 0.0 0.00067 19.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|307595165|ref|YP_003901482.1| - 0.069 12.7 0.0 0.14 11.7 0.0 1.5 1 1 1 2 2 2 0 GNAT acetyltransferase Acetyltransf_3 PF13302.7 gi|307595165|ref|YP_003901482.1| - 0.18 12.4 0.0 0.22 12.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Pyr_redox_2 PF07992.14 gi|307595166|ref|YP_003901483.1| - 4.9e-18 65.4 0.0 2.3e-17 63.2 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307595166|ref|YP_003901483.1| - 6e-06 26.7 3.9 0.0097 16.4 0.8 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|307595166|ref|YP_003901483.1| - 6.1e-05 23.0 0.2 0.0024 17.9 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding DAO PF01266.24 gi|307595166|ref|YP_003901483.1| - 0.00011 21.9 4.3 0.0004 20.1 2.0 2.3 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|307595166|ref|YP_003901483.1| - 0.00042 20.5 0.1 0.00091 19.4 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|307595166|ref|YP_003901483.1| - 0.001 18.0 0.6 0.0017 17.3 0.6 1.3 1 0 0 1 1 1 1 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|307595166|ref|YP_003901483.1| - 0.0084 15.4 0.5 0.076 12.2 0.4 2.2 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|307595166|ref|YP_003901483.1| - 0.023 13.8 0.2 0.037 13.1 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|307595166|ref|YP_003901483.1| - 0.024 13.8 0.0 0.056 12.6 0.0 1.6 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|307595166|ref|YP_003901483.1| - 0.035 13.2 0.3 0.065 12.3 0.3 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_7 PF13241.6 gi|307595166|ref|YP_003901483.1| - 0.064 13.7 0.1 0.14 12.6 0.1 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|307595166|ref|YP_003901483.1| - 0.091 12.0 0.1 0.17 11.1 0.1 1.4 1 0 0 1 1 1 0 Thi4 family Lactamase_B PF00753.27 gi|307595167|ref|YP_003901484.1| - 6e-27 94.9 0.2 8.6e-27 94.4 0.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|307595167|ref|YP_003901484.1| - 0.00036 20.1 0.0 0.00082 18.9 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|307595167|ref|YP_003901484.1| - 0.039 13.4 0.0 0.06 12.8 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Phage_holin_3_3 PF16083.5 gi|307595168|ref|YP_003901485.1| - 0.14 12.2 8.4 4.3 7.5 1.9 3.1 2 0 0 2 2 2 0 LydA holin phage, holin superfamily III Cys_Met_Meta_PP PF01053.20 gi|307595169|ref|YP_003901486.1| - 1.5e-123 412.1 0.0 1.7e-123 411.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|307595169|ref|YP_003901486.1| - 3.6e-06 26.2 0.3 5.3e-06 25.6 0.3 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|307595169|ref|YP_003901486.1| - 0.009 14.9 0.1 0.014 14.3 0.1 1.1 1 0 0 1 1 1 1 Glycine cleavage system P-protein DegT_DnrJ_EryC1 PF01041.17 gi|307595169|ref|YP_003901486.1| - 0.022 14.1 0.0 0.19 11.0 0.0 2.2 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|307595169|ref|YP_003901486.1| - 0.023 14.0 0.0 0.68 9.2 0.0 2.3 1 1 0 1 1 1 0 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|307595169|ref|YP_003901486.1| - 0.039 12.5 0.1 0.061 11.8 0.1 1.4 1 0 0 1 1 1 0 Methionine gamma-lyase P5CR_dimer PF14748.6 gi|307595170|ref|YP_003901487.1| - 4.4e-29 100.8 0.0 7.5e-29 100.0 0.0 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|307595170|ref|YP_003901487.1| - 7.8e-20 71.3 0.2 1.5e-19 70.4 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|307595170|ref|YP_003901487.1| - 6.8e-08 32.3 0.8 1.5e-07 31.2 0.8 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|307595170|ref|YP_003901487.1| - 1.2e-06 28.6 0.4 3.8e-06 27.0 0.4 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|307595170|ref|YP_003901487.1| - 3.7e-06 27.2 0.1 3.2e-05 24.2 0.1 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|307595170|ref|YP_003901487.1| - 0.00057 20.0 0.1 0.00094 19.3 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|307595170|ref|YP_003901487.1| - 0.0024 17.4 0.1 0.0037 16.9 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Rossmann-like PF10727.9 gi|307595170|ref|YP_003901487.1| - 0.004 17.0 0.8 0.0086 15.9 0.7 1.7 1 1 0 1 1 1 1 Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|307595170|ref|YP_003901487.1| - 0.0076 15.6 0.1 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDH PF02153.17 gi|307595170|ref|YP_003901487.1| - 0.012 14.6 0.5 0.016 14.2 0.5 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase ThiF PF00899.21 gi|307595170|ref|YP_003901487.1| - 0.027 13.8 1.6 0.09 12.1 0.2 2.0 1 1 1 2 2 2 0 ThiF family TrkA_N PF02254.18 gi|307595170|ref|YP_003901487.1| - 0.027 14.7 0.2 0.05 13.9 0.2 1.4 1 0 0 1 1 1 0 TrkA-N domain DapB_N PF01113.20 gi|307595170|ref|YP_003901487.1| - 0.15 12.2 1.0 0.22 11.6 0.1 1.8 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Metallophos_2 PF12850.7 gi|307595171|ref|YP_003901488.1| - 2.1e-05 24.8 0.1 0.00011 22.4 0.1 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|307595171|ref|YP_003901488.1| - 0.068 13.7 6.2 0.98 9.9 6.2 2.2 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase DUF3782 PF12644.7 gi|307595172|ref|YP_003901489.1| - 1.4e-27 95.6 1.5 1.4e-27 95.6 1.5 3.3 1 1 2 3 3 3 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|307595172|ref|YP_003901489.1| - 1.8e-27 95.1 6.1 4.8e-27 93.7 6.1 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily ScsC_N PF18312.1 gi|307595172|ref|YP_003901489.1| - 0.0014 18.4 0.5 1.3 8.9 0.1 3.0 1 1 1 2 2 2 2 Copper resistance protein ScsC N-terminal domain V_ATPase_I PF01496.19 gi|307595172|ref|YP_003901489.1| - 0.012 13.5 0.7 0.012 13.5 0.7 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Lipoprotein_7 PF01540.16 gi|307595172|ref|YP_003901489.1| - 0.014 14.7 5.0 0.02 14.2 5.0 1.3 1 0 0 1 1 1 0 Adhesin lipoprotein DUF883 PF05957.13 gi|307595172|ref|YP_003901489.1| - 0.028 15.0 8.3 0.18 12.4 1.3 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Vac14_Fig4_bd PF11916.8 gi|307595172|ref|YP_003901489.1| - 0.037 13.7 1.3 0.38 10.4 1.3 2.1 1 1 0 1 1 1 0 Vacuolar protein 14 C-terminal Fig4p binding PCRF PF03462.18 gi|307595172|ref|YP_003901489.1| - 0.04 13.8 5.8 0.062 13.2 5.8 1.3 1 0 0 1 1 1 0 PCRF domain NAPRTase_C PF17956.1 gi|307595172|ref|YP_003901489.1| - 0.044 14.2 6.6 2.1 8.8 0.3 2.4 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase C-terminal domain DUF4795 PF16043.5 gi|307595172|ref|YP_003901489.1| - 0.058 13.0 16.0 0.18 11.4 15.9 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Fib_alpha PF08702.10 gi|307595172|ref|YP_003901489.1| - 0.073 13.3 8.4 0.13 12.5 8.4 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF885 PF05960.11 gi|307595172|ref|YP_003901489.1| - 0.077 12.6 4.2 0.1 12.2 4.2 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Atypical_Card PF18461.1 gi|307595172|ref|YP_003901489.1| - 0.087 13.0 0.5 0.21 11.8 0.2 1.8 1 1 0 1 1 1 0 Atypical caspase recruitment domain HMMR_C PF15908.5 gi|307595172|ref|YP_003901489.1| - 0.096 12.9 7.4 1.1 9.6 6.7 2.3 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor C-terminal Syntaxin_2 PF14523.6 gi|307595172|ref|YP_003901489.1| - 0.11 12.9 7.2 3 8.2 0.7 3.1 1 1 2 3 3 3 0 Syntaxin-like protein DUF4407 PF14362.6 gi|307595172|ref|YP_003901489.1| - 0.15 11.4 1.9 0.21 10.9 1.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) YtxH PF12732.7 gi|307595172|ref|YP_003901489.1| - 0.16 12.6 8.9 1 9.9 7.8 2.4 2 1 0 2 2 1 0 YtxH-like protein Atg14 PF10186.9 gi|307595172|ref|YP_003901489.1| - 0.75 8.8 8.2 1.1 8.3 8.2 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2730 PF10805.8 gi|307595172|ref|YP_003901489.1| - 0.87 9.7 8.5 1.5 9.0 6.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) Seryl_tRNA_N PF02403.22 gi|307595172|ref|YP_003901489.1| - 1.2 9.5 12.5 5.3 7.3 12.7 2.0 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain OmpH PF03938.14 gi|307595172|ref|YP_003901489.1| - 1.2 9.5 13.1 2.3 8.6 13.1 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) YabA PF06156.13 gi|307595172|ref|YP_003901489.1| - 1.2 9.8 10.4 3.9 8.2 10.4 1.9 1 1 0 1 1 1 0 Initiation control protein YabA Seadorna_VP6 PF07407.11 gi|307595172|ref|YP_003901489.1| - 1.3 7.9 5.9 0.35 9.8 3.0 1.5 2 0 0 2 2 2 0 Seadornavirus VP6 protein Phlebovirus_NSM PF07246.11 gi|307595172|ref|YP_003901489.1| - 1.3 8.3 8.9 2.2 7.6 8.9 1.3 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M LPD5 PF18799.1 gi|307595172|ref|YP_003901489.1| - 1.3 9.4 9.0 0.27 11.6 2.7 2.2 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 5 DUF1664 PF07889.12 gi|307595172|ref|YP_003901489.1| - 1.4 9.0 9.8 7.7 6.6 10.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) YojJ PF10372.9 gi|307595172|ref|YP_003901489.1| - 1.4 9.0 7.7 9.3 6.4 3.6 3.3 2 1 3 5 5 4 0 Bacterial membrane-spanning protein N-terminus FlaC_arch PF05377.11 gi|307595172|ref|YP_003901489.1| - 1.5 9.3 12.7 1.7 9.1 3.7 3.4 1 1 2 3 3 2 0 Flagella accessory protein C (FlaC) COMM_domain PF07258.14 gi|307595172|ref|YP_003901489.1| - 1.9 8.6 5.7 9.3 6.5 0.1 3.1 1 1 2 3 3 3 0 COMM domain DUF932 PF06067.11 gi|307595172|ref|YP_003901489.1| - 2.2 8.0 7.4 5.7 6.6 7.3 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF932) THOC7 PF05615.13 gi|307595172|ref|YP_003901489.1| - 2.6 8.3 16.2 0.98 9.7 11.3 2.1 1 1 1 2 2 2 0 Tho complex subunit 7 RPN7 PF10602.9 gi|307595172|ref|YP_003901489.1| - 3.1 7.5 9.8 8.6 6.0 8.9 1.9 1 1 1 2 2 2 0 26S proteasome subunit RPN7 COG2 PF06148.11 gi|307595172|ref|YP_003901489.1| - 7.7 6.6 10.6 1.7e+02 2.3 10.7 2.2 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2203 PF09969.9 gi|307595172|ref|YP_003901489.1| - 9.4 7.0 8.8 77 4.0 8.8 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF996 PF06195.13 gi|307595173|ref|YP_003901490.1| - 2.4e-33 115.3 21.6 4.1e-33 114.5 21.6 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF996) Flavi_M PF01004.19 gi|307595173|ref|YP_003901490.1| - 0.39 10.5 0.2 0.39 10.5 0.2 2.3 2 1 0 2 2 2 0 Flavivirus envelope glycoprotein M CENP-F_leu_zip PF10473.9 gi|307595174|ref|YP_003901491.1| - 0.0013 18.8 0.1 0.0026 17.8 0.1 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1479 PF07350.12 gi|307595174|ref|YP_003901491.1| - 0.0081 15.0 0.0 0.01 14.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1479) FlaC_arch PF05377.11 gi|307595174|ref|YP_003901491.1| - 0.037 14.4 1.5 0.046 14.1 0.2 2.0 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|307595174|ref|YP_003901491.1| - 0.051 12.5 0.0 0.092 11.6 0.0 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Filament PF00038.21 gi|307595174|ref|YP_003901491.1| - 0.053 13.1 0.8 0.58 9.7 0.7 1.8 1 1 1 2 2 2 0 Intermediate filament protein Laminin_II PF06009.12 gi|307595174|ref|YP_003901491.1| - 0.1 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Laminin Domain II PaREP1 PF05942.11 gi|307595175|ref|YP_003901492.1| - 2.1e-20 72.8 0.0 3.3e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Aldo_ket_red PF00248.21 gi|307595176|ref|YP_003901493.1| - 6.3e-38 130.6 0.0 7.8e-38 130.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family His_biosynth PF00977.21 gi|307595180|ref|YP_003901497.1| - 0.092 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein PP-binding PF00550.25 gi|307595180|ref|YP_003901497.1| - 0.095 13.1 0.0 0.21 11.9 0.0 1.7 1 0 0 1 1 1 0 Phosphopantetheine attachment site TPP_enzyme_C PF02775.21 gi|307595181|ref|YP_003901498.1| - 1.5e-31 109.2 0.2 3.2e-31 108.2 0.2 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|307595181|ref|YP_003901498.1| - 2.5e-24 85.2 0.3 4.4e-24 84.4 0.3 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal 2_5_RNA_ligase2 PF13563.6 gi|307595182|ref|YP_003901499.1| - 6.8e-12 45.6 0.0 8e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|307595182|ref|YP_003901499.1| - 0.00082 19.5 0.0 0.095 12.9 0.0 2.3 2 0 0 2 2 2 2 LigT like Phosphoesterase CPDase PF07823.11 gi|307595182|ref|YP_003901499.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Cyclic phosphodiesterase-like protein DUF3673 PF12425.8 gi|307595182|ref|YP_003901499.1| - 0.2 11.6 0.0 0.36 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3673) DM PF00751.18 gi|307595183|ref|YP_003901500.1| - 0.068 13.1 0.3 0.13 12.2 0.1 1.5 2 0 0 2 2 2 0 DM DNA binding domain EMP24_GP25L PF01105.24 gi|307595184|ref|YP_003901501.1| - 0.061 13.3 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD AAA_14 PF13173.6 gi|307595185|ref|YP_003901502.1| - 0.00092 19.3 0.4 0.66 10.0 0.0 2.7 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|307595185|ref|YP_003901502.1| - 0.055 13.2 0.7 10 5.8 0.0 2.5 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|307595185|ref|YP_003901502.1| - 0.059 13.7 0.1 0.42 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|307595185|ref|YP_003901502.1| - 0.062 13.6 0.3 0.17 12.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|307595185|ref|YP_003901502.1| - 0.11 12.8 0.2 0.23 11.7 0.2 1.5 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|307595185|ref|YP_003901502.1| - 1.6 8.2 4.2 1.1 8.6 0.1 2.4 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit OrfB_Zn_ribbon PF07282.11 gi|307595186|ref|YP_003901503.1| - 1.9e-14 53.3 0.0 3.7e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF4556 PF15094.6 gi|307595186|ref|YP_003901503.1| - 0.017 14.4 0.0 0.08 12.2 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4556) Ribosomal_S27 PF01599.19 gi|307595186|ref|YP_003901503.1| - 0.019 15.2 2.3 0.033 14.4 2.3 1.4 1 0 0 1 1 1 0 Ribosomal protein S27a DUF1610 PF07754.11 gi|307595186|ref|YP_003901503.1| - 0.041 13.9 0.1 0.14 12.2 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) DZR PF12773.7 gi|307595186|ref|YP_003901503.1| - 0.088 12.9 0.5 0.17 11.9 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.23 gi|307595186|ref|YP_003901503.1| - 0.089 13.1 1.1 0.24 11.7 1.1 1.7 1 1 0 1 1 1 0 Ribosomal L32p protein family Auto_anti-p27 PF06677.12 gi|307595186|ref|YP_003901503.1| - 0.26 11.5 1.7 0.48 10.6 1.7 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|307595186|ref|YP_003901503.1| - 3 7.7 8.2 6.3 6.7 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|307595186|ref|YP_003901503.1| - 6.2 6.4 7.8 1.4 8.4 3.6 2.1 2 1 0 2 2 2 0 zinc-ribbon domain CbiZ PF01955.18 gi|307595187|ref|YP_003901504.1| - 1.5e-36 126.4 1.5 1.7e-36 126.2 1.5 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase OCD_Mu_crystall PF02423.15 gi|307595188|ref|YP_003901505.1| - 1.1e-64 218.4 0.6 1.6e-64 217.9 0.6 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|307595188|ref|YP_003901505.1| - 7.6e-08 32.5 0.0 1.2e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|307595188|ref|YP_003901505.1| - 0.019 15.5 0.1 0.055 14.0 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|307595188|ref|YP_003901505.1| - 0.036 14.2 0.1 0.075 13.2 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ClpS PF02617.17 gi|307595188|ref|YP_003901505.1| - 0.091 12.6 0.1 0.47 10.3 0.0 2.1 1 1 1 2 2 2 0 ATP-dependent Clp protease adaptor protein ClpS BAR PF03114.18 gi|307595188|ref|YP_003901505.1| - 0.22 11.1 0.1 0.32 10.6 0.1 1.1 1 0 0 1 1 1 0 BAR domain NTP_transf_3 PF12804.7 gi|307595190|ref|YP_003901507.1| - 6.7e-42 143.6 0.1 8.5e-42 143.2 0.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|307595190|ref|YP_003901507.1| - 3.1e-07 30.4 0.0 4.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.16 gi|307595190|ref|YP_003901507.1| - 2.7e-05 23.5 0.0 5.3e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 Guanylyl transferase CofC like CTP_transf_3 PF02348.19 gi|307595190|ref|YP_003901507.1| - 0.19 11.7 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase SNARE_assoc PF09335.11 gi|307595191|ref|YP_003901508.1| - 1.6e-20 73.8 11.1 1.6e-20 73.8 11.1 1.6 2 0 0 2 2 2 1 SNARE associated Golgi protein Gly-zipper_Omp PF13488.6 gi|307595191|ref|YP_003901508.1| - 0.035 14.1 0.3 0.077 13.0 0.3 1.5 1 0 0 1 1 1 0 Glycine zipper DUF2873 PF11395.8 gi|307595191|ref|YP_003901508.1| - 1.6 8.6 3.8 7.9 6.4 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2873) Glycos_trans_3N PF02885.17 gi|307595192|ref|YP_003901509.1| - 0.052 13.4 0.4 0.084 12.7 0.4 1.5 1 1 0 1 1 1 0 Glycosyl transferase family, helical bundle domain CARD PF00619.21 gi|307595192|ref|YP_003901509.1| - 0.084 12.9 0.4 0.18 11.9 0.4 1.6 1 1 0 1 1 1 0 Caspase recruitment domain ATPase_2 PF01637.18 gi|307595194|ref|YP_003901511.1| - 1.7e-20 74.0 0.0 2.8e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|307595194|ref|YP_003901511.1| - 9.8e-09 35.3 0.1 0.00074 19.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|307595194|ref|YP_003901511.1| - 9.4e-08 32.6 0.0 2.5e-07 31.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307595194|ref|YP_003901511.1| - 0.0011 19.3 0.0 0.012 15.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain GhoS PF11080.8 gi|307595194|ref|YP_003901511.1| - 0.066 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Endoribonuclease GhoS ATPase_2 PF01637.18 gi|307595195|ref|YP_003901512.1| - 1.5e-17 64.3 0.0 2.7e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|307595195|ref|YP_003901512.1| - 6.6e-12 45.9 0.0 2.3e-11 44.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|307595195|ref|YP_003901512.1| - 1.7e-10 41.0 0.0 1.7e-08 34.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307595195|ref|YP_003901512.1| - 5.6e-07 30.1 0.3 1.5e-06 28.7 0.1 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|307595195|ref|YP_003901512.1| - 5.3e-06 26.9 0.0 1.9e-05 25.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.14 gi|307595195|ref|YP_003901512.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 KAP family P-loop domain Asp_protease_2 PF13650.6 gi|307595196|ref|YP_003901513.1| - 2.6e-07 31.2 0.0 1.6e-06 28.6 0.0 1.9 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|307595196|ref|YP_003901513.1| - 3.7e-05 24.2 0.0 6.5e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|307595196|ref|YP_003901513.1| - 0.027 14.8 0.0 0.052 13.9 0.0 1.5 1 1 0 1 1 1 0 Retroviral aspartyl protease PIN PF01850.21 gi|307595197|ref|YP_003901514.1| - 2.2e-07 31.4 0.2 2.8e-07 31.1 0.2 1.1 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|307595198|ref|YP_003901515.1| - 4.7e-09 36.0 0.4 6.5e-09 35.5 0.4 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF2959 PF11172.8 gi|307595198|ref|YP_003901515.1| - 0.019 15.1 0.1 0.022 14.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) PrlF_antitoxin PF15937.5 gi|307595198|ref|YP_003901515.1| - 0.098 13.1 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin PaREP1 PF05942.11 gi|307595199|ref|YP_003901516.1| - 3.5e-21 75.3 0.0 5.4e-21 74.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Polbeta PF18765.1 gi|307595200|ref|YP_003901517.1| - 5.6e-23 80.8 0.0 1.2e-22 79.7 0.0 1.6 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|307595200|ref|YP_003901517.1| - 7e-09 35.9 0.1 1.5e-08 34.8 0.1 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|307595200|ref|YP_003901517.1| - 2.1e-07 30.8 0.1 6.2e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF86 DUF4145 PF13643.6 gi|307595200|ref|YP_003901517.1| - 0.046 13.8 0.0 0.13 12.4 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) RlaP PF10127.9 gi|307595200|ref|YP_003901517.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family PA14 PF07691.12 gi|307595201|ref|YP_003901518.1| - 1.8e-05 24.6 0.2 4.3e-05 23.3 0.2 1.7 1 1 0 1 1 1 1 PA14 domain GLEYA PF10528.9 gi|307595201|ref|YP_003901518.1| - 0.0024 18.3 0.2 0.0024 18.3 0.2 2.7 3 0 0 3 3 3 1 GLEYA domain MazE_antitoxin PF04014.18 gi|307595207|ref|YP_003901524.1| - 3.1e-06 27.0 0.2 0.0018 18.2 0.0 2.3 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin T2SSF PF00482.23 gi|307595208|ref|YP_003901525.1| - 8.2e-12 45.2 5.0 8.2e-12 45.2 5.0 2.7 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F STIMATE PF12400.8 gi|307595208|ref|YP_003901525.1| - 7.9 7.0 12.9 0.094 13.3 2.3 2.3 2 0 0 2 2 2 0 STIMATE family T2SSE PF00437.20 gi|307595209|ref|YP_003901526.1| - 6.6e-48 163.1 0.0 9.7e-48 162.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|307595209|ref|YP_003901526.1| - 2e-06 28.4 0.0 3.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|307595209|ref|YP_003901526.1| - 2.8e-05 23.7 0.0 5.6e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|307595209|ref|YP_003901526.1| - 4.2e-05 23.5 0.0 7.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|307595209|ref|YP_003901526.1| - 0.00018 22.1 0.1 0.00033 21.2 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307595209|ref|YP_003901526.1| - 0.00023 21.6 0.0 0.00053 20.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|307595209|ref|YP_003901526.1| - 0.00048 20.1 0.0 0.00093 19.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase cobW PF02492.19 gi|307595209|ref|YP_003901526.1| - 0.0028 17.3 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|307595209|ref|YP_003901526.1| - 0.0093 16.2 0.0 0.022 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|307595209|ref|YP_003901526.1| - 0.014 15.5 0.0 0.032 14.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|307595209|ref|YP_003901526.1| - 0.038 13.5 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|307595209|ref|YP_003901526.1| - 0.039 14.0 0.0 0.082 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ArsR PF09824.9 gi|307595209|ref|YP_003901526.1| - 0.04 13.5 0.0 0.21 11.2 0.0 2.1 2 0 0 2 2 2 0 ArsR transcriptional regulator AAA_24 PF13479.6 gi|307595209|ref|YP_003901526.1| - 0.05 13.3 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|307595209|ref|YP_003901526.1| - 0.059 13.6 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|307595209|ref|YP_003901526.1| - 0.063 13.0 0.0 0.085 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.27 gi|307595209|ref|YP_003901526.1| - 0.064 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain SMC_N PF02463.19 gi|307595209|ref|YP_003901526.1| - 0.069 12.6 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|307595209|ref|YP_003901526.1| - 0.078 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|307595209|ref|YP_003901526.1| - 0.092 11.6 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain IstB_IS21 PF01695.17 gi|307595209|ref|YP_003901526.1| - 0.094 12.4 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Adeno_IVa2 PF02456.15 gi|307595209|ref|YP_003901526.1| - 0.099 11.4 0.0 0.15 10.8 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein NACHT PF05729.12 gi|307595209|ref|YP_003901526.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.18 gi|307595209|ref|YP_003901526.1| - 0.13 11.6 0.1 0.25 10.7 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SSF PF00482.23 gi|307595210|ref|YP_003901527.1| - 5.4e-08 32.8 3.7 5.4e-08 32.8 3.7 2.4 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Ssl1 PF04056.14 gi|307595210|ref|YP_003901527.1| - 0.038 13.8 0.1 0.064 13.1 0.1 1.3 1 0 0 1 1 1 0 Ssl1-like DUF4330 PF14221.6 gi|307595211|ref|YP_003901528.1| - 0.0071 16.6 0.5 0.0078 16.4 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4330) GPI-anchored PF10342.9 gi|307595211|ref|YP_003901528.1| - 0.022 15.5 1.7 0.11 13.2 1.7 2.0 1 1 0 1 1 1 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family LTD PF00932.19 gi|307595211|ref|YP_003901528.1| - 0.038 14.3 0.2 0.05 14.0 0.2 1.2 1 0 0 1 1 1 0 Lamin Tail Domain LTD PF00932.19 gi|307595212|ref|YP_003901529.1| - 0.0062 16.9 0.1 0.009 16.4 0.1 1.3 1 0 0 1 1 1 1 Lamin Tail Domain ACT PF01842.25 gi|307595214|ref|YP_003901531.1| - 4.2e-06 26.4 0.1 9.2e-06 25.3 0.1 1.7 1 0 0 1 1 1 1 ACT domain PAE PF03283.13 gi|307595215|ref|YP_003901532.1| - 9.1e-09 34.9 0.0 2.1e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 Pectinacetylesterase Abhydrolase_3 PF07859.13 gi|307595215|ref|YP_003901532.1| - 0.086 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Fer4 PF00037.27 gi|307595216|ref|YP_003901533.1| - 1.4e-11 43.6 12.5 4.1e-06 26.4 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307595216|ref|YP_003901533.1| - 1.9e-10 41.2 5.2 3.5e-10 40.3 5.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307595216|ref|YP_003901533.1| - 6.9e-09 35.7 5.8 1.2e-08 34.9 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307595216|ref|YP_003901533.1| - 1.6e-08 34.6 7.2 2.6e-08 33.9 7.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307595216|ref|YP_003901533.1| - 9.3e-08 32.9 8.0 0.0008 20.3 0.7 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|307595216|ref|YP_003901533.1| - 4.2e-07 30.3 1.8 0.022 15.2 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307595216|ref|YP_003901533.1| - 9.6e-07 29.3 1.4 0.035 14.7 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307595216|ref|YP_003901533.1| - 1.6e-06 27.9 13.2 0.0011 18.9 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307595216|ref|YP_003901533.1| - 1.8e-06 28.0 18.3 3.7e-05 23.7 10.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307595216|ref|YP_003901533.1| - 2e-05 24.4 9.7 0.025 14.7 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307595216|ref|YP_003901533.1| - 0.00065 20.5 17.7 0.093 13.7 5.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|307595216|ref|YP_003901533.1| - 0.0011 19.3 12.9 0.045 14.3 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|307595216|ref|YP_003901533.1| - 0.0015 18.3 4.7 0.088 12.6 0.4 2.2 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_5 PF12801.7 gi|307595216|ref|YP_003901533.1| - 0.0078 16.1 2.2 0.2 11.6 0.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|307595216|ref|YP_003901533.1| - 0.18 12.0 12.3 0.24 11.6 2.5 2.5 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307595216|ref|YP_003901533.1| - 0.19 12.3 14.5 0.29 11.7 2.5 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|307595216|ref|YP_003901533.1| - 0.61 10.9 14.1 2.4 9.0 3.9 3.2 2 2 0 2 2 2 0 4Fe-4S single cluster domain HTH_IclR PF09339.10 gi|307595217|ref|YP_003901534.1| - 1.4e-07 31.2 0.0 4.2e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|307595217|ref|YP_003901534.1| - 7.9e-07 28.9 0.1 0.00037 20.3 0.0 3.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|307595217|ref|YP_003901534.1| - 8.6e-05 22.0 0.1 0.007 15.9 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|307595217|ref|YP_003901534.1| - 0.00024 20.9 0.0 0.00057 19.7 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|307595217|ref|YP_003901534.1| - 0.0024 17.8 0.0 0.016 15.1 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|307595217|ref|YP_003901534.1| - 0.0054 16.7 0.0 0.03 14.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix RP-C PF03428.13 gi|307595217|ref|YP_003901534.1| - 0.0075 15.9 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_5 PF01022.20 gi|307595217|ref|YP_003901534.1| - 0.0098 15.7 0.0 0.03 14.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family AbiEi_4 PF13338.6 gi|307595217|ref|YP_003901534.1| - 0.034 14.3 0.0 0.062 13.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_27 PF13463.6 gi|307595217|ref|YP_003901534.1| - 0.069 13.6 0.0 0.26 11.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|307595217|ref|YP_003901534.1| - 0.22 11.2 0.0 0.47 10.1 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) CoA_binding PF02629.19 gi|307595218|ref|YP_003901535.1| - 9.9e-31 106.3 0.8 9.9e-31 106.3 0.8 2.3 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|307595218|ref|YP_003901535.1| - 1.4e-16 60.6 0.1 2.3e-16 60.0 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|307595218|ref|YP_003901535.1| - 1.8e-13 50.5 0.1 1.3e-12 47.7 0.0 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|307595218|ref|YP_003901535.1| - 3.8e-10 40.3 0.0 6.7e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|307595218|ref|YP_003901535.1| - 0.015 16.1 0.0 0.041 14.7 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|307595218|ref|YP_003901535.1| - 0.14 12.3 3.2 0.34 11.0 0.2 2.4 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus PHP PF02811.19 gi|307595218|ref|YP_003901535.1| - 0.14 12.5 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 PHP domain PutA_N PF18083.1 gi|307595218|ref|YP_003901535.1| - 0.14 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Proline utilization A N-terminal domain ATP-grasp_2 PF08442.10 gi|307595219|ref|YP_003901536.1| - 1.7e-52 178.0 0.4 6.3e-52 176.1 0.1 1.8 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|307595219|ref|YP_003901536.1| - 1.6e-19 70.3 0.7 2.5e-19 69.6 0.7 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|307595219|ref|YP_003901536.1| - 2.4e-07 30.4 0.8 2e-06 27.4 0.2 2.5 2 1 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|307595219|ref|YP_003901536.1| - 0.048 13.5 0.0 0.091 12.6 0.0 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain OKR_DC_1_N PF03709.15 gi|307595219|ref|YP_003901536.1| - 0.096 13.0 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain ZipA_C PF04354.13 gi|307595220|ref|YP_003901537.1| - 0.029 14.2 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 ZipA, C-terminal FtsZ-binding domain TrmB PF01978.19 gi|307595222|ref|YP_003901539.1| - 3.5e-09 36.4 0.0 1.7e-08 34.2 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|307595222|ref|YP_003901539.1| - 1.2e-05 24.8 0.0 2.9e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|307595222|ref|YP_003901539.1| - 0.00051 19.8 0.0 0.00099 18.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|307595222|ref|YP_003901539.1| - 0.0014 18.5 0.0 0.0031 17.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|307595222|ref|YP_003901539.1| - 0.0031 17.4 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|307595222|ref|YP_003901539.1| - 0.0096 15.7 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|307595222|ref|YP_003901539.1| - 0.017 14.9 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.20 gi|307595222|ref|YP_003901539.1| - 0.018 14.9 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|307595222|ref|YP_003901539.1| - 0.027 14.4 0.0 0.056 13.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 gi|307595222|ref|YP_003901539.1| - 0.06 13.5 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|307595222|ref|YP_003901539.1| - 0.15 12.2 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TMEM154 PF15102.6 gi|307595222|ref|YP_003901539.1| - 0.18 11.7 0.1 0.18 11.7 0.1 1.9 2 0 0 2 2 1 0 TMEM154 protein family AdoHcyase PF05221.17 gi|307595223|ref|YP_003901540.1| - 9.5e-74 248.2 0.0 1.4e-73 247.7 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|307595223|ref|YP_003901540.1| - 4.7e-53 179.6 0.5 7.6e-53 178.9 0.5 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|307595223|ref|YP_003901540.1| - 7.4e-07 28.7 0.2 1.4e-06 27.8 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|307595223|ref|YP_003901540.1| - 1.2e-05 25.0 0.2 2.2e-05 24.1 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain THF_DHG_CYH_C PF02882.19 gi|307595223|ref|YP_003901540.1| - 2.8 7.2 4.9 4.8 6.5 2.2 2.5 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABC_tran PF00005.27 gi|307595224|ref|YP_003901541.1| - 2.9e-31 108.8 0.0 4.8e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|307595224|ref|YP_003901541.1| - 6.9e-08 33.2 0.1 2.3e-07 31.5 0.1 2.0 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|307595224|ref|YP_003901541.1| - 4.4e-06 26.7 0.0 0.0054 16.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system GlcV_C_terminal PF17847.1 gi|307595224|ref|YP_003901541.1| - 4.4e-06 27.0 1.6 1.1e-05 25.8 1.6 1.7 1 0 0 1 1 1 1 Glucose ABC transporter C-terminal domain TOBE_2 PF08402.10 gi|307595224|ref|YP_003901541.1| - 2.5e-05 24.4 0.0 7.5e-05 22.8 0.0 1.9 1 0 0 1 1 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|307595224|ref|YP_003901541.1| - 5.7e-05 23.6 0.5 0.0014 19.2 0.2 2.6 2 0 0 2 2 2 1 CysA C-terminal regulatory domain ABC_ATPase PF09818.9 gi|307595224|ref|YP_003901541.1| - 0.0023 16.8 0.0 3 6.5 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|307595224|ref|YP_003901541.1| - 0.0053 16.7 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|307595224|ref|YP_003901541.1| - 0.0086 16.5 0.1 0.016 15.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307595224|ref|YP_003901541.1| - 0.016 15.5 0.1 0.057 13.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|307595224|ref|YP_003901541.1| - 0.019 14.7 0.0 0.048 13.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|307595224|ref|YP_003901541.1| - 0.019 14.7 0.1 0.052 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|307595224|ref|YP_003901541.1| - 0.028 14.8 0.1 0.38 11.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|307595224|ref|YP_003901541.1| - 0.049 13.5 0.0 0.079 12.9 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|307595224|ref|YP_003901541.1| - 0.07 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|307595224|ref|YP_003901541.1| - 0.07 13.4 0.1 0.55 10.5 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 gi|307595224|ref|YP_003901541.1| - 0.098 11.5 0.3 0.31 9.8 0.0 1.7 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_25 PF13481.6 gi|307595224|ref|YP_003901541.1| - 0.17 11.4 0.0 1 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain OTCace_N PF02729.21 gi|307595226|ref|YP_003901543.1| - 2.1e-44 151.1 0.0 2.9e-44 150.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|307595226|ref|YP_003901543.1| - 2.2e-27 96.1 0.0 3.4e-27 95.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|307595227|ref|YP_003901544.1| - 3.1e-33 113.9 0.2 4e-33 113.5 0.2 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|307595227|ref|YP_003901544.1| - 6.2e-19 67.6 1.1 7.6e-19 67.4 0.4 1.5 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Pribosyltran PF00156.27 gi|307595228|ref|YP_003901545.1| - 8.6e-20 70.9 0.3 1.3e-19 70.3 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|307595228|ref|YP_003901545.1| - 0.0044 16.5 0.0 0.0057 16.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Vac14_Fig4_bd PF11916.8 gi|307595228|ref|YP_003901545.1| - 0.063 12.9 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Vacuolar protein 14 C-terminal Fig4p binding CPT PF07931.12 gi|307595228|ref|YP_003901545.1| - 0.15 11.9 0.7 2.6 7.8 0.1 2.0 1 1 1 2 2 2 0 Chloramphenicol phosphotransferase-like protein DHO_dh PF01180.21 gi|307595229|ref|YP_003901546.1| - 9.2e-43 146.5 0.0 1.2e-42 146.1 0.0 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|307595229|ref|YP_003901546.1| - 0.16 11.3 0.1 0.22 10.9 0.1 1.1 1 0 0 1 1 1 0 Nitronate monooxygenase Peptidase_M50 PF02163.22 gi|307595230|ref|YP_003901547.1| - 7.3e-05 22.2 11.7 0.0034 16.7 4.6 2.8 1 1 1 2 2 2 2 Peptidase family M50 DUF4346 PF14251.6 gi|307595231|ref|YP_003901548.1| - 0.067 13.2 0.0 0.22 11.6 0.1 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4346) PUA PF01472.20 gi|307595231|ref|YP_003901548.1| - 0.12 12.4 0.0 0.34 10.9 0.0 1.8 1 0 0 1 1 1 0 PUA domain DUF996 PF06195.13 gi|307595232|ref|YP_003901549.1| - 0.0005 20.4 14.3 0.0005 20.4 14.3 3.2 3 1 1 4 4 4 1 Protein of unknown function (DUF996) 2-Hacid_dh_C PF02826.19 gi|307595234|ref|YP_003901551.1| - 5.5e-36 123.6 0.0 7.5e-36 123.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|307595234|ref|YP_003901551.1| - 4.7e-14 52.2 0.0 6e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|307595234|ref|YP_003901551.1| - 0.0015 19.0 0.0 0.012 16.1 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|307595234|ref|YP_003901551.1| - 0.042 14.0 0.0 0.061 13.5 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|307595234|ref|YP_003901551.1| - 0.1 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Yqai PF09466.10 gi|307595234|ref|YP_003901551.1| - 0.45 10.9 1.9 27 5.2 0.2 3.1 3 0 0 3 3 3 0 Hypothetical protein Yqai Ribosomal_S14 PF00253.21 gi|307595235|ref|YP_003901552.1| - 5.1e-12 45.4 4.3 6.5e-12 45.0 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|307595235|ref|YP_003901552.1| - 0.0018 18.1 5.4 0.0027 17.5 5.4 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS91 PF14319.6 gi|307595235|ref|YP_003901552.1| - 0.0056 16.7 0.3 0.0056 16.7 0.3 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-CCHC_3 PF13917.6 gi|307595235|ref|YP_003901552.1| - 0.035 14.1 1.9 0.5 10.4 0.1 2.4 2 0 0 2 2 2 0 Zinc knuckle zf_UBZ PF18439.1 gi|307595235|ref|YP_003901552.1| - 0.11 12.1 0.7 8.3 6.1 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-CCHC_2 PF13696.6 gi|307595235|ref|YP_003901552.1| - 2.5 8.0 7.2 1.1 9.2 0.8 2.2 2 0 0 2 2 2 0 Zinc knuckle AGOG PF09171.10 gi|307595236|ref|YP_003901553.1| - 0.0051 16.2 0.0 0.0074 15.6 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase EndIII_4Fe-2S PF10576.9 gi|307595236|ref|YP_003901553.1| - 0.13 12.6 5.1 0.22 11.9 5.1 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III DUF711 PF05167.12 gi|307595237|ref|YP_003901554.1| - 1.7e-36 126.0 0.0 6.7e-35 120.8 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised ACR (DUF711) PNP_UDP_1 PF01048.20 gi|307595238|ref|YP_003901555.1| - 9.2e-37 126.5 0.2 1e-36 126.4 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Polbeta PF18765.1 gi|307595240|ref|YP_003901557.1| - 1.2e-21 76.6 0.0 2.4e-21 75.6 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|307595240|ref|YP_003901557.1| - 7.9e-18 64.5 0.1 1.3e-17 63.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.23 gi|307595240|ref|YP_003901557.1| - 9.3e-11 41.9 0.1 1.7e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain RlaP PF10127.9 gi|307595240|ref|YP_003901557.1| - 0.11 12.0 0.1 0.56 9.8 0.0 2.0 1 1 0 2 2 2 0 RNA repair pathway DNA polymerase beta family RseC_MucC PF04246.12 gi|307595241|ref|YP_003901558.1| - 2.2 8.2 8.5 2.9 7.8 1.7 2.4 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF2070 PF09843.9 gi|307595241|ref|YP_003901558.1| - 2.7 6.2 13.1 3.6 5.8 13.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) AbrB PF05145.12 gi|307595242|ref|YP_003901559.1| - 0.0023 17.0 0.1 0.0039 16.2 0.1 1.3 1 0 0 1 1 1 1 Transition state regulatory protein AbrB Thg1 PF04446.12 gi|307595243|ref|YP_003901560.1| - 1.3e-16 60.8 0.0 2e-16 60.2 0.0 1.3 1 1 0 1 1 1 1 tRNAHis guanylyltransferase TENA_THI-4 PF03070.16 gi|307595244|ref|YP_003901561.1| - 2e-25 89.8 0.6 2.7e-25 89.4 0.6 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DUF4070 PF13282.6 gi|307595244|ref|YP_003901561.1| - 0.04 14.0 0.3 1.9 8.6 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4070) DLP_helical PF18709.1 gi|307595244|ref|YP_003901561.1| - 0.071 12.3 0.1 0.099 11.8 0.1 1.1 1 0 0 1 1 1 0 Dynamin-like helical domain HSBP1 PF06825.12 gi|307595245|ref|YP_003901562.1| - 4.3e-06 26.5 10.6 0.0025 17.6 2.2 3.8 1 1 2 3 3 3 2 Heat shock factor binding protein 1 BLOC1_2 PF10046.9 gi|307595245|ref|YP_003901562.1| - 1.9e-05 24.9 0.1 3.4e-05 24.1 0.1 1.4 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Hemagglutinin PF00509.18 gi|307595245|ref|YP_003901562.1| - 0.0012 17.4 0.4 0.0013 17.2 0.4 1.1 1 0 0 1 1 1 1 Haemagglutinin NPV_P10 PF05531.12 gi|307595245|ref|YP_003901562.1| - 0.0016 18.8 0.1 0.037 14.5 0.0 2.1 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|307595245|ref|YP_003901562.1| - 0.0066 16.5 0.2 0.02 15.0 0.2 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1664) DUF1640 PF07798.11 gi|307595245|ref|YP_003901562.1| - 0.011 15.8 0.2 0.013 15.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) Baculo_PEP_C PF04513.12 gi|307595245|ref|YP_003901562.1| - 0.013 15.5 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4455 PF14643.6 gi|307595245|ref|YP_003901562.1| - 0.014 14.0 0.0 0.017 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) BAR PF03114.18 gi|307595245|ref|YP_003901562.1| - 0.016 14.9 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 BAR domain Spc7 PF08317.11 gi|307595245|ref|YP_003901562.1| - 0.017 14.0 0.0 0.021 13.7 0.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF16 PF01519.16 gi|307595245|ref|YP_003901562.1| - 0.02 15.4 0.1 0.031 14.8 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 UPF0128 PF03673.13 gi|307595245|ref|YP_003901562.1| - 0.023 14.2 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0128) DUF4795 PF16043.5 gi|307595245|ref|YP_003901562.1| - 0.026 14.2 1.1 0.03 13.9 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) CdvA PF18822.1 gi|307595245|ref|YP_003901562.1| - 0.029 14.2 1.0 0.098 12.5 1.0 2.0 1 1 0 1 1 1 0 CdvA-like coiled-coil domain LPP PF04728.13 gi|307595245|ref|YP_003901562.1| - 0.031 14.6 0.1 9 6.8 0.1 3.1 1 1 0 1 1 1 0 Lipoprotein leucine-zipper MutS_IV PF05190.18 gi|307595245|ref|YP_003901562.1| - 0.047 14.0 0.4 0.39 11.1 0.2 2.1 1 1 1 2 2 2 0 MutS family domain IV ABC_tran_CTD PF16326.5 gi|307595245|ref|YP_003901562.1| - 0.048 13.9 0.0 1.1 9.6 0.0 2.2 1 1 1 2 2 2 0 ABC transporter C-terminal domain DUF244 PF03112.14 gi|307595245|ref|YP_003901562.1| - 0.053 13.4 0.8 0.17 11.7 0.2 1.8 1 1 1 2 2 2 0 Uncharacterized protein family (ORF7) DUF TssO PF17561.2 gi|307595245|ref|YP_003901562.1| - 0.054 13.6 0.3 0.77 9.9 0.2 2.2 1 1 0 1 1 1 0 Type VI secretion system, TssO CorA PF01544.18 gi|307595245|ref|YP_003901562.1| - 0.058 12.7 0.2 0.071 12.4 0.2 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2730 PF10805.8 gi|307595245|ref|YP_003901562.1| - 0.068 13.3 0.1 0.13 12.4 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) TraF_2 PF13729.6 gi|307595245|ref|YP_003901562.1| - 0.072 12.5 1.0 0.3 10.4 1.0 1.8 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein Apolipoprotein PF01442.18 gi|307595245|ref|YP_003901562.1| - 0.077 12.9 0.0 0.093 12.6 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Syntaxin_2 PF14523.6 gi|307595245|ref|YP_003901562.1| - 0.079 13.3 0.8 0.34 11.3 0.7 1.9 1 1 0 1 1 1 0 Syntaxin-like protein DUF913 PF06025.12 gi|307595245|ref|YP_003901562.1| - 0.082 11.9 0.1 0.1 11.5 0.1 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) Fzo_mitofusin PF04799.13 gi|307595245|ref|YP_003901562.1| - 0.1 12.2 0.2 0.48 10.0 0.1 1.7 1 1 1 2 2 2 0 fzo-like conserved region MtrG PF04210.13 gi|307595245|ref|YP_003901562.1| - 0.11 12.4 1.1 17 5.3 0.1 2.8 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF3921 PF13060.6 gi|307595245|ref|YP_003901562.1| - 0.11 12.5 0.5 7.5 6.7 0.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3921) KxDL PF10241.9 gi|307595245|ref|YP_003901562.1| - 0.12 12.7 0.3 0.62 10.4 0.3 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein HalX PF08663.10 gi|307595245|ref|YP_003901562.1| - 0.13 12.6 0.3 0.3 11.4 0.3 1.8 1 1 0 1 1 1 0 HalX domain XhlA PF10779.9 gi|307595245|ref|YP_003901562.1| - 0.21 11.8 0.8 3.8 7.8 0.7 2.4 1 1 0 1 1 1 0 Haemolysin XhlA Pilin_N PF07790.11 gi|307595246|ref|YP_003901563.1| - 0.042 14.8 3.3 0.067 14.1 3.3 1.3 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Vpu PF00558.19 gi|307595246|ref|YP_003901563.1| - 0.068 12.9 2.8 0.12 12.2 2.8 1.3 1 0 0 1 1 1 0 Vpu protein EamA PF00892.20 gi|307595247|ref|YP_003901564.1| - 1.8e-34 118.9 35.3 3.3e-18 66.2 17.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|307595247|ref|YP_003901564.1| - 0.0014 18.1 17.3 0.002 17.5 17.3 1.3 1 0 0 1 1 1 1 Triose-phosphate Transporter family Lactamase_B PF00753.27 gi|307595249|ref|YP_003901566.1| - 1.4e-28 100.3 1.0 1.8e-28 99.9 1.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|307595249|ref|YP_003901566.1| - 0.01 15.3 0.1 0.013 15.0 0.1 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|307595249|ref|YP_003901566.1| - 0.011 15.6 0.1 0.015 15.2 0.1 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF973 PF06157.11 gi|307595252|ref|YP_003901569.1| - 1.5e-05 24.2 39.0 1.5e-05 24.2 39.0 2.5 2 1 1 3 3 3 1 Protein of unknown function (DUF973) PaREP1 PF05942.11 gi|307595252|ref|YP_003901569.1| - 0.045 13.7 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family Polbeta PF18765.1 gi|307595253|ref|YP_003901570.1| - 1.1e-09 38.3 0.0 1.7e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|307595254|ref|YP_003901571.1| - 7.3e-16 58.1 0.0 9.7e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF2250 PF10007.9 gi|307595254|ref|YP_003901571.1| - 0.026 14.6 0.0 0.041 14.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Creatininase PF02633.14 gi|307595255|ref|YP_003901572.1| - 1.7e-63 214.3 0.0 2e-63 214.1 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ODV-E18 PF10717.9 gi|307595256|ref|YP_003901573.1| - 0.028 14.3 1.4 0.028 14.3 1.4 2.6 3 0 0 3 3 3 0 Occlusion-derived virus envelope protein ODV-E18 NICE-3 PF07406.11 gi|307595257|ref|YP_003901574.1| - 3.3 7.6 4.9 3.1 7.7 4.9 1.0 1 0 0 1 1 1 0 NICE-3 protein Aldedh PF00171.22 gi|307595258|ref|YP_003901575.1| - 3.1e-157 523.8 0.0 3.5e-157 523.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Vut_1 PF02592.15 gi|307595260|ref|YP_003901577.1| - 1.4e-25 90.4 11.4 1.4e-25 90.4 11.4 1.8 2 0 0 2 2 2 1 Putative vitamin uptake transporter DUF1664 PF07889.12 gi|307595262|ref|YP_003901579.1| - 4e-05 23.7 0.1 0.31 11.1 0.8 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Phage_Mu_Gam PF07352.12 gi|307595262|ref|YP_003901579.1| - 4.3e-05 23.5 0.4 0.017 15.0 0.0 2.1 2 0 0 2 2 2 1 Bacteriophage Mu Gam like protein Baculo_PEP_C PF04513.12 gi|307595262|ref|YP_003901579.1| - 0.00031 20.8 0.0 0.44 10.6 0.0 2.0 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus HSBP1 PF06825.12 gi|307595262|ref|YP_003901579.1| - 0.00049 19.9 10.9 0.27 11.1 1.6 4.4 1 1 3 4 4 4 2 Heat shock factor binding protein 1 DUF2046 PF09755.9 gi|307595262|ref|YP_003901579.1| - 0.001 18.4 0.3 0.0012 18.2 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein H4 (DUF2046) HalX PF08663.10 gi|307595262|ref|YP_003901579.1| - 0.0013 19.0 0.5 0.77 10.1 0.0 3.1 1 1 2 3 3 3 1 HalX domain Phasin PF05597.11 gi|307595262|ref|YP_003901579.1| - 0.0016 18.5 1.6 0.0033 17.4 1.6 1.6 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) AAA_13 PF13166.6 gi|307595262|ref|YP_003901579.1| - 0.0018 17.0 0.3 0.002 16.8 0.3 1.0 1 0 0 1 1 1 1 AAA domain DUF4407 PF14362.6 gi|307595262|ref|YP_003901579.1| - 0.0023 17.4 0.1 0.0033 16.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) OmpH PF03938.14 gi|307595262|ref|YP_003901579.1| - 0.0044 17.3 0.1 0.0064 16.8 0.1 1.3 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) FliD_C PF07195.12 gi|307595262|ref|YP_003901579.1| - 0.0047 16.4 0.2 0.19 11.2 0.2 2.1 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus Apolipoprotein PF01442.18 gi|307595262|ref|YP_003901579.1| - 0.0056 16.6 0.0 0.0074 16.2 0.0 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain MtrG PF04210.13 gi|307595262|ref|YP_003901579.1| - 0.0081 16.0 4.1 7.3 6.5 0.0 3.4 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G SHE3 PF17078.5 gi|307595262|ref|YP_003901579.1| - 0.0084 15.9 1.9 0.028 14.1 1.9 1.8 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 DUF4164 PF13747.6 gi|307595262|ref|YP_003901579.1| - 0.009 16.3 4.1 0.57 10.5 4.0 2.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4164) NPV_P10 PF05531.12 gi|307595262|ref|YP_003901579.1| - 0.0099 16.3 0.3 0.71 10.4 0.0 2.7 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein CdvA PF18822.1 gi|307595262|ref|YP_003901579.1| - 0.011 15.6 4.3 0.34 10.7 0.4 2.6 1 1 2 3 3 3 0 CdvA-like coiled-coil domain XhlA PF10779.9 gi|307595262|ref|YP_003901579.1| - 0.012 15.8 5.0 0.24 11.6 1.1 3.2 1 1 2 3 3 3 0 Haemolysin XhlA REF PF05755.12 gi|307595262|ref|YP_003901579.1| - 0.019 14.8 0.8 0.2 11.4 0.8 2.1 1 1 0 1 1 1 0 Rubber elongation factor protein (REF) COG2 PF06148.11 gi|307595262|ref|YP_003901579.1| - 0.019 15.1 0.2 0.74 9.9 0.2 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_II PF06009.12 gi|307595262|ref|YP_003901579.1| - 0.019 15.0 1.4 0.03 14.3 1.4 1.4 1 1 0 1 1 1 0 Laminin Domain II BLOC1_2 PF10046.9 gi|307595262|ref|YP_003901579.1| - 0.021 15.1 1.9 0.29 11.5 1.6 2.2 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FadA PF09403.10 gi|307595262|ref|YP_003901579.1| - 0.024 15.1 1.0 0.075 13.5 1.0 2.1 1 1 0 1 1 1 0 Adhesion protein FadA FPP PF05911.11 gi|307595262|ref|YP_003901579.1| - 0.038 12.2 2.1 0.044 12.0 2.1 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil MerR-DNA-bind PF09278.11 gi|307595262|ref|YP_003901579.1| - 0.043 14.4 3.1 23 5.6 0.1 3.5 1 1 2 3 3 3 0 MerR, DNA binding TRPM_tetra PF16519.5 gi|307595262|ref|YP_003901579.1| - 0.045 13.8 1.4 0.18 12.0 0.2 2.5 2 1 1 3 3 3 0 Tetramerisation domain of TRPM CLZ PF16526.5 gi|307595262|ref|YP_003901579.1| - 0.046 14.1 0.9 0.82 10.1 0.9 2.5 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FAM76 PF16046.5 gi|307595262|ref|YP_003901579.1| - 0.075 12.4 0.3 0.081 12.3 0.3 1.1 1 0 0 1 1 1 0 FAM76 protein Nup54 PF13874.6 gi|307595262|ref|YP_003901579.1| - 0.1 12.7 0.1 0.31 11.2 0.1 1.9 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Spc42p PF11544.8 gi|307595262|ref|YP_003901579.1| - 0.11 12.4 2.1 3.5 7.7 0.9 2.9 2 1 0 2 2 2 0 Spindle pole body component Spc42p DUF1640 PF07798.11 gi|307595262|ref|YP_003901579.1| - 0.16 12.0 3.0 3.3 7.7 1.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) ING PF12998.7 gi|307595262|ref|YP_003901579.1| - 0.16 12.6 2.7 0.54 10.9 2.7 2.1 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding CpXC PF14353.6 gi|307595262|ref|YP_003901579.1| - 0.64 10.1 3.6 3.1 7.9 0.2 2.4 2 1 1 3 3 3 0 CpXC protein Hemagglutinin PF00509.18 gi|307595262|ref|YP_003901579.1| - 1 7.7 2.7 2.7 6.3 0.4 2.0 1 1 1 2 2 2 0 Haemagglutinin ATP-synt_E_2 PF08112.11 gi|307595262|ref|YP_003901579.1| - 4.4 7.7 10.2 0.4 11.0 1.7 2.8 2 2 1 3 3 3 0 ATP synthase epsilon subunit 5-FTHF_cyc-lig PF01812.20 gi|307595263|ref|YP_003901580.1| - 1e-29 103.8 0.0 1.2e-29 103.5 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Csa1 PF06023.12 gi|307595265|ref|YP_003901582.1| - 4.6e-18 65.6 0.3 1.8e-16 60.4 0.0 2.3 2 1 0 2 2 2 1 CRISPR-associated exonuclease Csa1 Cas_Cas4 PF01930.17 gi|307595265|ref|YP_003901582.1| - 0.0017 18.5 0.0 0.013 15.6 0.0 2.1 2 1 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|307595265|ref|YP_003901582.1| - 0.01 15.7 0.1 0.75 9.7 0.1 2.1 1 1 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Ocular_alb PF02101.15 gi|307595265|ref|YP_003901582.1| - 0.11 11.3 0.0 0.54 9.1 0.0 1.8 2 0 0 2 2 2 0 Ocular albinism type 1 protein CRISPR_Cas6 PF10040.9 gi|307595266|ref|YP_003901583.1| - 5e-15 55.9 0.3 2.2e-14 53.8 0.1 1.9 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|307595266|ref|YP_003901583.1| - 0.0021 18.3 0.0 0.0034 17.7 0.0 1.3 1 0 0 1 1 1 1 Cas6 N-terminal domain Cas_DxTHG PF09455.10 gi|307595267|ref|YP_003901584.1| - 7e-13 48.9 0.0 4.9e-11 42.8 0.0 2.2 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family QSregVF PF13652.6 gi|307595267|ref|YP_003901584.1| - 0.09 12.8 0.2 3.2 7.8 0.0 2.3 2 0 0 2 2 2 0 Putative quorum-sensing-regulated virulence factor Cas_APE2256 PF09651.10 gi|307595268|ref|YP_003901585.1| - 3.6e-35 120.8 0.0 5.2e-35 120.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Csm1_B PF18211.1 gi|307595271|ref|YP_003901588.1| - 5.4e-09 35.8 0.0 2.3e-08 33.8 0.0 2.1 2 0 0 2 2 2 1 Csm1 subunit domain B CRISPR_Cas6 PF10040.9 gi|307595273|ref|YP_003901590.1| - 0.097 13.3 0.0 0.17 12.5 0.0 1.5 1 0 0 1 1 1 0 CRISPR-associated endoribonuclease Cas6 RAMPs PF03787.15 gi|307595274|ref|YP_003901591.1| - 1.9e-08 34.6 0.1 8.9e-08 32.4 0.1 1.9 1 1 0 1 1 1 1 RAMP superfamily Csm2_III-A PF03750.13 gi|307595275|ref|YP_003901592.1| - 2.2e-06 28.5 0.1 3e-06 28.1 0.1 1.1 1 0 0 1 1 1 1 Csm2 Type III-A Phage_min_cap2 PF06152.11 gi|307595275|ref|YP_003901592.1| - 0.011 14.6 0.0 0.014 14.4 0.0 1.0 1 0 0 1 1 1 0 Phage minor capsid protein 2 AAA_15 PF13175.6 gi|307595276|ref|YP_003901593.1| - 1.2e-10 41.7 0.0 8.4e-05 22.4 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|307595276|ref|YP_003901593.1| - 1.6e-07 31.4 1.2 0.00097 19.0 0.1 2.6 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|307595276|ref|YP_003901593.1| - 0.055 14.0 0.0 0.092 13.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_23 PF13476.6 gi|307595276|ref|YP_003901593.1| - 0.23 11.9 0.1 0.37 11.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain NurA PF09376.10 gi|307595278|ref|YP_003901595.1| - 5.6e-07 29.5 0.3 9.5e-07 28.8 0.3 1.4 1 0 0 1 1 1 1 NurA domain EIF_2_alpha PF07541.12 gi|307595278|ref|YP_003901595.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 2 alpha subunit DUF87 PF01935.17 gi|307595279|ref|YP_003901596.1| - 1.3e-11 45.0 0.0 4.5e-11 43.3 0.0 1.9 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|307595279|ref|YP_003901596.1| - 1.3e-10 40.5 1.5 1.3e-05 24.0 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|307595279|ref|YP_003901596.1| - 3.8e-08 33.0 1.7 1.5e-06 27.8 0.1 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|307595279|ref|YP_003901596.1| - 4.5e-07 30.2 0.4 0.0015 18.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|307595279|ref|YP_003901596.1| - 2.4e-06 28.0 0.9 0.059 13.8 0.1 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|307595279|ref|YP_003901596.1| - 1.9e-05 23.9 0.0 2.8e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.9 gi|307595279|ref|YP_003901596.1| - 2.5e-05 23.4 0.2 0.00015 20.8 0.1 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.9 gi|307595279|ref|YP_003901596.1| - 7.9e-05 22.0 0.2 0.25 10.5 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Pox_A32 PF04665.12 gi|307595279|ref|YP_003901596.1| - 8.3e-05 22.2 0.1 0.00016 21.3 0.1 1.3 1 0 0 1 1 1 1 Poxvirus A32 protein AAA_10 PF12846.7 gi|307595279|ref|YP_003901596.1| - 0.00018 20.5 0.2 0.013 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain ResIII PF04851.15 gi|307595279|ref|YP_003901596.1| - 0.0004 20.4 0.3 0.034 14.1 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|307595279|ref|YP_003901596.1| - 0.00042 20.1 0.1 0.34 10.6 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase SRP54 PF00448.22 gi|307595279|ref|YP_003901596.1| - 0.00068 19.3 0.2 0.0011 18.7 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|307595279|ref|YP_003901596.1| - 0.0017 18.8 0.1 0.039 14.4 0.1 2.3 2 0 0 2 2 2 1 AAA ATPase domain Zot PF05707.12 gi|307595279|ref|YP_003901596.1| - 0.0031 17.2 0.1 0.013 15.1 0.0 2.0 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) MeaB PF03308.16 gi|307595279|ref|YP_003901596.1| - 0.0041 16.1 0.1 0.0078 15.2 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|307595279|ref|YP_003901596.1| - 0.0046 16.9 0.3 0.01 15.7 0.3 1.6 1 0 0 1 1 1 1 NACHT domain RuvB_N PF05496.12 gi|307595279|ref|YP_003901596.1| - 0.0054 16.5 0.1 0.013 15.3 0.1 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Viral_helicase1 PF01443.18 gi|307595279|ref|YP_003901596.1| - 0.0068 16.2 0.1 0.021 14.6 0.1 1.8 2 0 0 2 2 1 1 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|307595279|ref|YP_003901596.1| - 0.0072 15.6 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin ABC_tran PF00005.27 gi|307595279|ref|YP_003901596.1| - 0.0077 16.7 0.0 0.017 15.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_7 PF12775.7 gi|307595279|ref|YP_003901596.1| - 0.0086 15.6 0.2 0.014 14.9 0.2 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region IPT PF01745.16 gi|307595279|ref|YP_003901596.1| - 0.009 15.4 0.3 0.23 10.8 0.0 2.4 3 0 0 3 3 2 1 Isopentenyl transferase PduV-EutP PF10662.9 gi|307595279|ref|YP_003901596.1| - 0.0091 15.7 0.2 0.018 14.8 0.2 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.6 gi|307595279|ref|YP_003901596.1| - 0.0092 16.1 0.3 0.029 14.5 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|307595279|ref|YP_003901596.1| - 0.011 16.3 0.5 0.03 14.9 0.1 2.0 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|307595279|ref|YP_003901596.1| - 0.015 15.1 0.6 0.067 12.9 0.2 2.0 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|307595279|ref|YP_003901596.1| - 0.018 14.4 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Arf PF00025.21 gi|307595279|ref|YP_003901596.1| - 0.023 14.2 0.3 0.04 13.4 0.3 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family cobW PF02492.19 gi|307595279|ref|YP_003901596.1| - 0.031 13.9 0.3 0.06 12.9 0.3 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|307595279|ref|YP_003901596.1| - 0.032 14.0 0.1 0.068 12.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|307595279|ref|YP_003901596.1| - 0.036 13.6 1.0 0.27 10.8 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|307595279|ref|YP_003901596.1| - 0.037 14.3 1.0 0.059 13.6 0.1 1.8 2 0 0 2 2 1 0 AAA domain HTH_Tnp_4 PF13613.6 gi|307595279|ref|YP_003901596.1| - 0.044 13.5 0.0 0.097 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease G-alpha PF00503.20 gi|307595279|ref|YP_003901596.1| - 0.06 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit UvrD-helicase PF00580.21 gi|307595279|ref|YP_003901596.1| - 0.066 12.7 0.7 0.12 11.8 0.7 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain CbiA PF01656.23 gi|307595279|ref|YP_003901596.1| - 0.086 12.9 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|307595279|ref|YP_003901596.1| - 0.1 12.5 0.4 0.18 11.7 0.4 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRPRB PF09439.10 gi|307595279|ref|YP_003901596.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit ATPase_2 PF01637.18 gi|307595279|ref|YP_003901596.1| - 0.11 12.4 0.0 0.33 10.8 0.0 1.8 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|307595279|ref|YP_003901596.1| - 0.12 12.7 0.3 0.33 11.3 0.2 1.8 2 0 0 2 2 1 0 AAA domain AAA_23 PF13476.6 gi|307595279|ref|YP_003901596.1| - 0.12 12.8 0.0 0.2 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|307595279|ref|YP_003901596.1| - 0.16 12.0 0.1 0.43 10.7 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|307595279|ref|YP_003901596.1| - 0.17 11.9 0.0 0.44 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|307595279|ref|YP_003901596.1| - 0.18 11.0 0.1 0.29 10.3 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain Cas_APE2256 PF09651.10 gi|307595280|ref|YP_003901597.1| - 3.6e-18 65.8 0.0 4.8e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) RAMPs PF03787.15 gi|307595281|ref|YP_003901598.1| - 0.00016 21.8 0.3 0.0038 17.3 0.3 2.4 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|307595282|ref|YP_003901599.1| - 1.5e-07 31.7 0.1 1.2e-06 28.8 0.1 2.1 1 1 0 1 1 1 1 RAMP superfamily DUF4497 PF14924.6 gi|307595282|ref|YP_003901599.1| - 0.22 12.0 0.0 0.72 10.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4497) Cas_Cmr5 PF09701.10 gi|307595283|ref|YP_003901600.1| - 1.9e-05 24.9 0.1 0.00027 21.2 0.1 2.1 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) MIT PF04212.18 gi|307595283|ref|YP_003901600.1| - 0.045 13.8 1.0 4.2 7.5 0.0 3.1 2 2 1 3 3 3 0 MIT (microtubule interacting and transport) domain RAMPs PF03787.15 gi|307595284|ref|YP_003901601.1| - 1.6e-26 93.6 0.0 2e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily DUF3692 PF12469.8 gi|307595285|ref|YP_003901602.1| - 1.5e-28 99.2 0.0 3.4e-28 98.1 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated protein Cas_Cmr3 PF09700.10 gi|307595286|ref|YP_003901603.1| - 0.014 14.8 0.2 0.24 10.8 0.2 2.4 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Cmr3) AAA_33 PF13671.6 gi|307595287|ref|YP_003901604.1| - 0.0063 16.7 0.0 0.0069 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|307595287|ref|YP_003901604.1| - 0.007 16.3 0.0 0.0086 16.0 0.0 1.1 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 gi|307595287|ref|YP_003901604.1| - 0.033 14.6 0.0 0.039 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|307595287|ref|YP_003901604.1| - 0.066 13.6 0.0 0.13 12.7 0.0 1.5 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|307595287|ref|YP_003901604.1| - 0.067 12.4 0.1 0.12 11.5 0.1 1.6 1 1 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 gi|307595287|ref|YP_003901604.1| - 0.085 12.2 0.1 0.12 11.7 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF2075 PF09848.9 gi|307595287|ref|YP_003901604.1| - 0.17 11.1 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PaREP1 PF05942.11 gi|307595291|ref|YP_003901608.1| - 1.5e-27 95.8 0.6 1.8e-27 95.6 0.6 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SMC_hinge PF06470.13 gi|307595291|ref|YP_003901608.1| - 0.04 14.2 0.0 0.066 13.5 0.0 1.4 1 0 0 1 1 1 0 SMC proteins Flexible Hinge Domain FtsQ PF03799.15 gi|307595291|ref|YP_003901608.1| - 0.063 14.1 0.4 0.53 11.1 0.4 2.0 1 1 0 1 1 1 0 Cell division protein FtsQ DUF973 PF06157.11 gi|307595292|ref|YP_003901609.1| - 3e-06 26.5 23.1 4.1e-06 26.1 23.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF973) TMCCDC2 PF15844.5 gi|307595292|ref|YP_003901609.1| - 0.15 12.0 1.9 0.15 11.9 0.5 1.7 1 1 1 2 2 2 0 Transmembrane and coiled-coil domain-containing protein 2 DUF2310 PF10071.9 gi|307595292|ref|YP_003901609.1| - 0.21 10.8 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) DUF4184 PF13803.6 gi|307595292|ref|YP_003901609.1| - 0.97 9.1 8.5 0.66 9.6 2.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4184) MFS_1 PF07690.16 gi|307595293|ref|YP_003901610.1| - 1.5e-33 116.2 58.3 1.4e-25 90.0 33.8 3.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|307595293|ref|YP_003901610.1| - 6e-07 28.6 12.5 1.8e-06 27.0 2.4 2.3 1 1 1 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.13 gi|307595293|ref|YP_003901610.1| - 0.0018 16.8 15.9 0.0024 16.3 15.9 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector HEV_ORF1 PF02444.16 gi|307595293|ref|YP_003901610.1| - 0.0039 17.7 0.1 0.011 16.3 0.1 1.7 1 0 0 1 1 1 1 Hepatitis E virus ORF-2 (Putative capsid protein) Sugar_tr PF00083.24 gi|307595293|ref|YP_003901610.1| - 0.089 11.6 21.2 0.03 13.2 2.4 3.4 1 1 0 3 3 3 0 Sugar (and other) transporter Arg_repressor_C PF02863.18 gi|307595293|ref|YP_003901610.1| - 0.16 11.8 0.8 0.57 10.1 0.1 2.3 3 0 0 3 3 3 0 Arginine repressor, C-terminal domain DUF3782 PF12644.7 gi|307595294|ref|YP_003901611.1| - 3.3e-24 84.8 0.6 1.6e-23 82.6 0.4 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|307595294|ref|YP_003901611.1| - 1.8e-15 56.6 1.0 4.5e-15 55.3 1.0 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily SlyX PF04102.12 gi|307595294|ref|YP_003901611.1| - 0.00011 22.8 0.3 0.016 15.8 0.1 2.4 1 1 1 2 2 2 1 SlyX Atg14 PF10186.9 gi|307595294|ref|YP_003901611.1| - 0.00051 19.2 0.3 0.00073 18.7 0.3 1.3 1 1 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 TFA2_Winged_2 PF18121.1 gi|307595294|ref|YP_003901611.1| - 0.0012 18.5 3.3 0.0098 15.6 3.3 2.5 1 1 0 1 1 1 1 TFA2 Winged helix domain 2 COMP PF11598.8 gi|307595294|ref|YP_003901611.1| - 0.0016 18.9 3.0 0.018 15.5 0.0 2.9 2 1 1 3 3 3 1 Cartilage oligomeric matrix protein KASH_CCD PF14662.6 gi|307595294|ref|YP_003901611.1| - 0.0018 18.1 0.7 0.0027 17.6 0.7 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH DUF16 PF01519.16 gi|307595294|ref|YP_003901611.1| - 0.0019 18.6 1.6 0.031 14.8 1.1 2.2 1 1 1 2 2 2 1 Protein of unknown function DUF16 Fib_alpha PF08702.10 gi|307595294|ref|YP_003901611.1| - 0.0027 17.9 1.7 0.074 13.2 0.1 2.2 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family Mod_r PF07200.13 gi|307595294|ref|YP_003901611.1| - 0.0029 17.7 0.6 0.0044 17.1 0.6 1.2 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein SYCE1 PF15233.6 gi|307595294|ref|YP_003901611.1| - 0.015 15.4 0.7 0.025 14.7 0.7 1.3 1 0 0 1 1 1 0 Synaptonemal complex central element protein 1 Wtap PF17098.5 gi|307595294|ref|YP_003901611.1| - 0.026 14.5 0.3 0.047 13.6 0.3 1.5 1 0 0 1 1 1 0 WTAP/Mum2p family XhlA PF10779.9 gi|307595294|ref|YP_003901611.1| - 0.026 14.7 2.0 1.6 9.0 0.1 2.7 2 1 1 3 3 2 0 Haemolysin XhlA Baculo_PEP_C PF04513.12 gi|307595294|ref|YP_003901611.1| - 0.026 14.6 0.1 0.049 13.7 0.1 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus BRE1 PF08647.11 gi|307595294|ref|YP_003901611.1| - 0.028 14.5 0.1 0.052 13.6 0.1 1.4 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase KxDL PF10241.9 gi|307595294|ref|YP_003901611.1| - 0.03 14.6 0.1 0.053 13.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein DUF812 PF05667.11 gi|307595294|ref|YP_003901611.1| - 0.033 13.1 0.1 0.041 12.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) MIP-T3_C PF17749.1 gi|307595294|ref|YP_003901611.1| - 0.041 13.8 0.3 0.37 10.7 0.1 2.3 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Tweety PF04906.13 gi|307595294|ref|YP_003901611.1| - 0.042 12.5 0.2 0.057 12.1 0.2 1.1 1 0 0 1 1 1 0 Tweety TMF_DNA_bd PF12329.8 gi|307595294|ref|YP_003901611.1| - 0.066 13.2 5.6 2 8.5 0.2 2.6 2 1 0 3 3 3 0 TATA element modulatory factor 1 DNA binding ADIP PF11559.8 gi|307595294|ref|YP_003901611.1| - 0.068 13.2 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding HEAT_2 PF13646.6 gi|307595294|ref|YP_003901611.1| - 0.069 13.5 0.1 0.56 10.6 0.0 2.3 1 1 1 2 2 2 0 HEAT repeats Sec34 PF04136.15 gi|307595294|ref|YP_003901611.1| - 0.071 13.0 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Sec34-like family ATG16 PF08614.11 gi|307595294|ref|YP_003901611.1| - 0.088 13.0 0.7 0.23 11.7 0.3 1.7 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|307595294|ref|YP_003901611.1| - 0.092 11.4 0.1 0.11 11.2 0.1 1.0 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.12 gi|307595294|ref|YP_003901611.1| - 0.099 12.7 3.0 0.15 12.1 1.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) NRBF2 PF08961.10 gi|307595294|ref|YP_003901611.1| - 0.11 12.1 0.2 0.19 11.3 0.2 1.4 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator Spc7 PF08317.11 gi|307595294|ref|YP_003901611.1| - 0.11 11.3 0.4 0.14 11.0 0.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF1216 PF06746.11 gi|307595294|ref|YP_003901611.1| - 0.12 12.4 0.8 0.18 11.8 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1216) Acetyltransf_11 PF13720.6 gi|307595294|ref|YP_003901611.1| - 0.12 12.8 0.1 0.29 11.6 0.1 1.7 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Spc29 PF17082.5 gi|307595294|ref|YP_003901611.1| - 0.18 11.6 0.2 0.22 11.4 0.2 1.2 1 0 0 1 1 1 0 Spindle Pole Component 29 DUF948 PF06103.11 gi|307595294|ref|YP_003901611.1| - 0.2 11.9 1.5 0.37 11.1 1.5 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF5082 PF16888.5 gi|307595294|ref|YP_003901611.1| - 0.28 11.5 1.6 2.7 8.3 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) FlaC_arch PF05377.11 gi|307595294|ref|YP_003901611.1| - 0.49 10.8 9.4 48 4.5 0.1 3.9 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) TMF_TATA_bd PF12325.8 gi|307595294|ref|YP_003901611.1| - 0.5 10.6 4.1 1.3 9.2 1.2 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding bZIP_1 PF00170.21 gi|307595294|ref|YP_003901611.1| - 0.7 10.0 5.8 1.5 9.0 0.5 3.1 3 1 1 4 4 3 0 bZIP transcription factor Hydantoinase_B PF02538.14 gi|307595295|ref|YP_003901612.1| - 9.5e-191 634.7 0.3 1.1e-190 634.5 0.3 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase NTP_transf_2 PF01909.23 gi|307595296|ref|YP_003901613.1| - 6.3e-10 39.2 0.0 7.7e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|307595296|ref|YP_003901613.1| - 4.2e-06 26.8 0.0 6.9e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|307595296|ref|YP_003901613.1| - 0.051 13.8 0.0 0.072 13.3 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm TrmB PF01978.19 gi|307595298|ref|YP_003901615.1| - 4.2e-05 23.3 0.4 0.077 12.9 0.0 4.0 3 1 1 4 4 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|307595298|ref|YP_003901615.1| - 5.1e-05 22.7 0.0 0.00083 18.9 0.0 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Apolipoprotein PF01442.18 gi|307595298|ref|YP_003901615.1| - 7.7e-05 22.6 1.5 0.00055 19.9 0.1 2.8 3 0 0 3 3 3 1 Apolipoprotein A1/A4/E domain MarR_2 PF12802.7 gi|307595298|ref|YP_003901615.1| - 9.9e-05 22.1 0.0 1.3 9.0 0.0 3.7 2 1 1 3 3 3 1 MarR family MarR PF01047.22 gi|307595298|ref|YP_003901615.1| - 0.00036 20.4 0.1 0.012 15.5 0.0 3.2 3 0 0 3 3 3 1 MarR family AAA_16 PF13191.6 gi|307595298|ref|YP_003901615.1| - 0.00072 20.0 0.5 0.36 11.2 0.0 3.9 2 2 1 3 3 3 1 AAA ATPase domain DUF4618 PF15397.6 gi|307595298|ref|YP_003901615.1| - 0.0029 17.0 0.6 0.0051 16.3 0.1 1.6 2 0 0 2 2 1 1 Domain of unknown function (DUF4618) HTH_45 PF14947.6 gi|307595298|ref|YP_003901615.1| - 0.0059 16.6 0.0 0.39 10.7 0.0 3.1 2 0 0 2 2 2 1 Winged helix-turn-helix Baculo_PEP_C PF04513.12 gi|307595298|ref|YP_003901615.1| - 0.0067 16.5 14.1 0.15 12.1 2.3 4.2 2 1 3 5 5 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF815 PF05673.13 gi|307595298|ref|YP_003901615.1| - 0.0075 15.5 1.4 0.018 14.2 0.0 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF815) DUF4795 PF16043.5 gi|307595298|ref|YP_003901615.1| - 0.013 15.2 5.4 0.078 12.6 4.2 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) AAA_29 PF13555.6 gi|307595298|ref|YP_003901615.1| - 0.018 14.8 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Dynamin_M PF01031.20 gi|307595298|ref|YP_003901615.1| - 0.019 14.2 2.0 1.3 8.2 0.2 2.6 1 1 1 2 2 2 0 Dynamin central region Spc7 PF08317.11 gi|307595298|ref|YP_003901615.1| - 0.02 13.8 1.0 0.045 12.6 1.0 1.5 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF2791 PF10923.8 gi|307595298|ref|YP_003901615.1| - 0.024 13.5 0.0 0.13 11.1 0.0 2.3 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) CorA PF01544.18 gi|307595298|ref|YP_003901615.1| - 0.034 13.5 3.2 0.076 12.3 2.1 2.2 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein EF-hand_9 PF14658.6 gi|307595298|ref|YP_003901615.1| - 0.034 14.5 0.0 1.7 9.0 0.0 2.9 2 0 0 2 2 2 0 EF-hand domain Nbl1_Borealin_N PF10444.9 gi|307595298|ref|YP_003901615.1| - 0.036 13.7 0.2 0.14 11.8 0.2 2.0 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal DUF2250 PF10007.9 gi|307595298|ref|YP_003901615.1| - 0.043 13.9 0.1 3.4 7.9 0.0 3.1 3 0 0 3 3 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1664 PF07889.12 gi|307595298|ref|YP_003901615.1| - 0.045 13.8 0.9 15 5.6 0.1 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) B-block_TFIIIC PF04182.12 gi|307595298|ref|YP_003901615.1| - 0.086 13.0 0.0 1.2 9.3 0.0 2.6 3 0 0 3 3 2 0 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.6 gi|307595298|ref|YP_003901615.1| - 0.1 12.6 0.0 1.3 9.1 0.0 3.0 3 0 0 3 3 2 0 Crp-like helix-turn-helix domain Fib_alpha PF08702.10 gi|307595298|ref|YP_003901615.1| - 0.12 12.5 1.0 0.37 11.0 0.8 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family TFIIE_alpha PF02002.17 gi|307595298|ref|YP_003901615.1| - 0.14 12.0 1.0 1.7 8.6 0.0 3.3 3 0 0 3 3 3 0 TFIIE alpha subunit AAA_13 PF13166.6 gi|307595298|ref|YP_003901615.1| - 0.16 10.6 0.9 0.24 10.0 0.2 1.6 2 0 0 2 2 2 0 AAA domain ApoLp-III PF07464.11 gi|307595298|ref|YP_003901615.1| - 0.36 10.9 1.6 1.1 9.3 0.1 2.7 3 1 1 4 4 2 0 Apolipophorin-III precursor (apoLp-III) NPV_P10 PF05531.12 gi|307595298|ref|YP_003901615.1| - 7.5 7.1 9.7 13 6.3 3.6 3.9 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Cbl_N PF02262.16 gi|307595299|ref|YP_003901616.1| - 0.17 11.9 0.3 3.6 7.6 0.1 2.1 1 1 1 2 2 2 0 CBL proto-oncogene N-terminal domain 1 NurA PF09376.10 gi|307595300|ref|YP_003901617.1| - 1.8e-05 24.5 1.2 0.0049 16.6 1.2 2.2 1 1 0 1 1 1 1 NurA domain DUF99 PF01949.16 gi|307595303|ref|YP_003901620.1| - 9.4e-61 204.4 0.0 1.1e-60 204.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DHDPS PF00701.22 gi|307595307|ref|YP_003901624.1| - 3.4e-48 163.8 0.0 4.1e-48 163.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HALZ PF02183.18 gi|307595307|ref|YP_003901624.1| - 0.13 12.5 4.8 0.96 9.7 0.2 3.5 4 0 0 4 4 4 0 Homeobox associated leucine zipper AAA_23 PF13476.6 gi|307595308|ref|YP_003901625.1| - 4.5e-18 66.5 7.2 4.5e-18 66.5 7.2 4.7 1 1 2 3 3 1 1 AAA domain SMC_N PF02463.19 gi|307595308|ref|YP_003901625.1| - 1e-16 61.1 0.0 5.3e-10 39.1 0.1 2.5 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|307595308|ref|YP_003901625.1| - 3e-12 46.9 16.2 9.7e-06 25.5 16.2 4.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|307595308|ref|YP_003901625.1| - 2.9e-09 36.2 34.9 0.0034 16.1 6.7 4.3 3 1 1 4 4 4 3 AAA domain AAA_21 PF13304.6 gi|307595308|ref|YP_003901625.1| - 1.5e-08 34.9 14.2 1.3e-05 25.2 1.9 3.5 3 2 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad50_zn_hook PF04423.14 gi|307595308|ref|YP_003901625.1| - 3.3e-05 23.6 2.0 3.3e-05 23.6 2.0 6.0 6 2 2 8 8 6 1 Rad50 zinc hook motif AAA_29 PF13555.6 gi|307595308|ref|YP_003901625.1| - 4.9e-05 23.0 0.0 8.7e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MscS_porin PF12795.7 gi|307595308|ref|YP_003901625.1| - 0.00094 18.8 34.9 0.0079 15.8 4.7 4.9 3 3 0 3 3 3 2 Mechanosensitive ion channel porin domain NADH-G_4Fe-4S_3 PF10588.9 gi|307595308|ref|YP_003901625.1| - 0.0014 18.1 0.2 0.0036 16.8 0.2 1.6 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fib_alpha PF08702.10 gi|307595308|ref|YP_003901625.1| - 0.0024 18.1 1.6 0.0024 18.1 1.6 6.1 2 1 4 6 6 6 1 Fibrinogen alpha/beta chain family Uteroglobin PF01099.17 gi|307595308|ref|YP_003901625.1| - 0.0031 17.8 3.1 1.3 9.4 0.0 3.9 4 0 0 4 4 3 1 Uteroglobin family AAA_27 PF13514.6 gi|307595308|ref|YP_003901625.1| - 0.0055 16.3 0.0 0.0055 16.3 0.0 3.7 4 0 0 4 4 4 1 AAA domain DUF1664 PF07889.12 gi|307595308|ref|YP_003901625.1| - 0.0066 16.5 26.2 0.37 10.8 0.2 6.4 2 2 2 5 5 5 2 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|307595308|ref|YP_003901625.1| - 0.0069 16.4 19.3 1.7 8.7 0.3 5.9 3 1 2 6 6 5 1 Baculovirus polyhedron envelope protein, PEP, C terminus Mce4_CUP1 PF11887.8 gi|307595308|ref|YP_003901625.1| - 0.0095 15.4 2.7 0.67 9.4 0.1 3.3 3 0 0 3 3 3 1 Cholesterol uptake porter CUP1 of Mce4, putative SKA2 PF16740.5 gi|307595308|ref|YP_003901625.1| - 0.011 15.5 23.2 0.2 11.5 0.1 6.4 4 3 2 6 6 6 0 Spindle and kinetochore-associated protein 2 Mut7-C PF01927.16 gi|307595308|ref|YP_003901625.1| - 0.013 15.6 4.0 0.24 11.5 4.0 2.9 1 1 0 1 1 1 0 Mut7-C RNAse domain MCPsignal PF00015.21 gi|307595308|ref|YP_003901625.1| - 0.019 14.8 5.9 0.32 10.8 0.4 3.9 3 1 0 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain NPV_P10 PF05531.12 gi|307595308|ref|YP_003901625.1| - 0.026 15.0 25.0 3.7 8.1 0.7 7.7 5 2 2 7 7 7 0 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.13 gi|307595308|ref|YP_003901625.1| - 0.027 15.2 30.8 0.5 11.1 4.0 5.9 3 3 2 5 5 5 0 Occludin homology domain DUF3800 PF12686.7 gi|307595308|ref|YP_003901625.1| - 0.028 15.0 2.6 9.6 6.9 2.6 3.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) EzrA PF06160.12 gi|307595308|ref|YP_003901625.1| - 0.035 12.3 45.8 0.28 9.3 29.5 2.9 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA GAS PF13851.6 gi|307595308|ref|YP_003901625.1| - 0.055 12.8 46.7 0.34 10.2 1.4 5.4 2 2 4 6 6 6 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.11 gi|307595308|ref|YP_003901625.1| - 0.059 12.2 49.6 0.16 10.8 3.0 4.5 1 1 5 6 6 6 0 Spc7 kinetochore protein She9_MDM33 PF05546.11 gi|307595308|ref|YP_003901625.1| - 0.082 12.7 19.2 0.045 13.6 0.9 4.3 2 1 2 4 4 4 0 She9 / Mdm33 family Vps39_2 PF10367.9 gi|307595308|ref|YP_003901625.1| - 0.18 12.3 1.0 16 6.0 0.2 3.4 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 HycH PF07450.11 gi|307595308|ref|YP_003901625.1| - 0.19 12.1 2.6 0.36 11.2 0.1 2.7 3 0 0 3 3 2 0 Formate hydrogenlyase maturation protein HycH Med15_fungi PF05397.12 gi|307595308|ref|YP_003901625.1| - 0.19 12.0 3.6 1.7 9.0 0.5 4.0 2 1 1 3 3 3 0 Mediator complex subunit 15 FUSC PF04632.12 gi|307595308|ref|YP_003901625.1| - 0.2 10.1 9.2 0.73 8.3 1.1 3.0 2 1 0 3 3 3 0 Fusaric acid resistance protein family AAA_22 PF13401.6 gi|307595308|ref|YP_003901625.1| - 0.2 11.9 11.3 0.65 10.3 3.0 4.7 1 1 2 3 3 3 0 AAA domain DUF16 PF01519.16 gi|307595308|ref|YP_003901625.1| - 0.31 11.6 28.8 1.2 9.7 0.9 5.8 3 2 1 4 4 3 0 Protein of unknown function DUF16 3-PAP PF12578.8 gi|307595308|ref|YP_003901625.1| - 0.41 10.4 3.7 2.8 7.7 0.0 3.7 4 1 0 4 4 3 0 Myotubularin-associated protein ABC_tran PF00005.27 gi|307595308|ref|YP_003901625.1| - 0.48 10.9 11.1 4.2 7.9 0.0 4.9 2 1 0 2 2 1 0 ABC transporter AAA PF00004.29 gi|307595308|ref|YP_003901625.1| - 0.78 10.2 0.0 0.78 10.2 0.0 3.5 4 1 0 4 4 2 0 ATPase family associated with various cellular activities (AAA) Allexi_40kDa PF05549.11 gi|307595308|ref|YP_003901625.1| - 0.84 9.1 22.6 1.1 8.7 0.5 4.5 2 2 2 4 4 4 0 Allexivirus 40kDa protein TMPIT PF07851.13 gi|307595308|ref|YP_003901625.1| - 0.86 8.8 23.9 3.4 6.8 1.0 4.2 2 1 2 4 4 4 0 TMPIT-like protein DUF3347 PF11827.8 gi|307595308|ref|YP_003901625.1| - 1.5 9.0 14.8 0.14 12.4 1.8 3.5 3 1 1 4 4 3 0 Protein of unknown function (DUF3347) HAUS6_N PF14661.6 gi|307595308|ref|YP_003901625.1| - 1.6 8.2 25.7 0.54 9.8 1.4 4.1 2 1 0 3 3 3 0 HAUS augmin-like complex subunit 6 N-terminus DUF2203 PF09969.9 gi|307595308|ref|YP_003901625.1| - 2.3 8.9 28.6 4.5 8.0 3.2 5.6 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) BLOC1_2 PF10046.9 gi|307595308|ref|YP_003901625.1| - 2.5 8.5 43.5 0.1 12.9 2.8 6.9 4 2 4 8 8 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_16 PF13191.6 gi|307595308|ref|YP_003901625.1| - 3.2 8.1 11.9 5.6e+02 0.8 11.8 4.2 1 1 0 1 1 1 0 AAA ATPase domain Rop-like PF05082.13 gi|307595308|ref|YP_003901625.1| - 4.3 7.2 9.3 0.95 9.3 0.1 4.2 4 0 0 4 4 3 0 Rop-like Syntaxin_2 PF14523.6 gi|307595308|ref|YP_003901625.1| - 4.7 7.6 29.9 28 5.2 1.7 6.2 3 2 2 5 5 4 0 Syntaxin-like protein DUF948 PF06103.11 gi|307595308|ref|YP_003901625.1| - 4.8 7.5 15.9 4.5 7.6 0.2 5.1 4 2 1 5 5 3 0 Bacterial protein of unknown function (DUF948) COG2 PF06148.11 gi|307595308|ref|YP_003901625.1| - 5.5 7.1 41.6 4.7 7.3 0.9 7.8 3 2 4 8 8 8 0 COG (conserved oligomeric Golgi) complex component, COG2 Bacillus_HBL PF05791.11 gi|307595308|ref|YP_003901625.1| - 5.8 6.7 16.2 8.8 6.1 1.3 4.5 3 1 1 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) Syntaxin-6_N PF09177.11 gi|307595308|ref|YP_003901625.1| - 7 7.3 37.2 0.6 10.7 2.5 6.1 2 2 3 5 5 5 0 Syntaxin 6, N-terminal TTRAP PF14203.6 gi|307595309|ref|YP_003901626.1| - 0.12 12.3 0.0 0.23 11.5 0.0 1.5 1 1 1 2 2 2 0 Putative tranposon-transfer assisting protein EzrA PF06160.12 gi|307595310|ref|YP_003901627.1| - 0.00041 18.7 1.5 0.00062 18.1 1.5 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA BLOC1_2 PF10046.9 gi|307595310|ref|YP_003901627.1| - 0.00068 19.9 1.1 0.0015 18.8 1.1 1.5 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|307595310|ref|YP_003901627.1| - 0.00088 19.3 1.7 0.0014 18.7 1.7 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4988 PF16378.5 gi|307595310|ref|YP_003901627.1| - 0.00094 18.9 3.0 0.019 14.7 0.2 2.2 2 0 0 2 2 2 1 Domain of unknown function HSBP1 PF06825.12 gi|307595310|ref|YP_003901627.1| - 0.014 15.2 0.4 0.014 15.2 0.4 2.6 3 0 0 3 3 3 0 Heat shock factor binding protein 1 DUF3567 PF12091.8 gi|307595310|ref|YP_003901627.1| - 0.014 15.5 0.0 0.048 13.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) AAA_13 PF13166.6 gi|307595310|ref|YP_003901627.1| - 0.033 12.8 0.1 0.047 12.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.12 gi|307595310|ref|YP_003901627.1| - 0.041 13.9 0.6 0.069 13.2 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Snapin_Pallidin PF14712.6 gi|307595310|ref|YP_003901627.1| - 0.043 14.2 2.1 0.098 13.1 2.1 1.5 1 1 0 1 1 1 0 Snapin/Pallidin Fmp27_WPPW PF10359.9 gi|307595310|ref|YP_003901627.1| - 0.055 12.3 0.2 0.072 11.9 0.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CorA PF01544.18 gi|307595310|ref|YP_003901627.1| - 0.061 12.6 0.8 0.095 12.0 0.8 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein FlaC_arch PF05377.11 gi|307595310|ref|YP_003901627.1| - 0.063 13.7 2.3 0.18 12.2 2.3 1.9 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ABC_tran_CTD PF16326.5 gi|307595310|ref|YP_003901627.1| - 0.067 13.4 0.1 0.13 12.5 0.1 1.5 1 0 0 1 1 1 0 ABC transporter C-terminal domain Prefoldin PF02996.17 gi|307595310|ref|YP_003901627.1| - 0.072 13.0 0.6 11 6.0 0.1 2.6 2 1 1 3 3 3 0 Prefoldin subunit Vps53_N PF04100.12 gi|307595310|ref|YP_003901627.1| - 0.077 11.9 1.0 0.11 11.5 1.0 1.1 1 0 0 1 1 1 0 Vps53-like, N-terminal GOLGA2L5 PF15070.6 gi|307595310|ref|YP_003901627.1| - 0.079 11.6 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 CCDC-167 PF15188.6 gi|307595310|ref|YP_003901627.1| - 0.087 13.2 2.7 0.15 12.4 2.7 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 NPV_P10 PF05531.12 gi|307595310|ref|YP_003901627.1| - 0.094 13.2 3.8 0.23 11.9 3.8 1.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Phasin PF05597.11 gi|307595310|ref|YP_003901627.1| - 0.15 12.1 0.3 0.25 11.3 0.3 1.4 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) MtrB PF05440.12 gi|307595310|ref|YP_003901627.1| - 0.18 12.2 0.3 1.7 9.1 0.2 2.3 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B YvrJ PF12841.7 gi|307595310|ref|YP_003901627.1| - 0.2 11.2 6.1 11 5.6 1.2 3.6 3 0 0 3 3 3 0 YvrJ protein family Syntaxin-6_N PF09177.11 gi|307595310|ref|YP_003901627.1| - 0.3 11.7 1.3 2 9.0 0.7 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal XhlA PF10779.9 gi|307595310|ref|YP_003901627.1| - 1.9 8.8 6.7 1.5e+02 2.7 6.8 2.5 1 1 0 1 1 1 0 Haemolysin XhlA Actin PF00022.19 gi|307595311|ref|YP_003901628.1| - 3.2e-09 35.9 0.0 1.3e-05 24.0 0.0 2.1 1 1 1 2 2 2 2 Actin Docking PF08990.11 gi|307595312|ref|YP_003901629.1| - 0.65 9.7 2.4 1.1 9.0 2.4 1.3 1 0 0 1 1 1 0 Erythronolide synthase docking Cyclophil_like PF04126.13 gi|307595313|ref|YP_003901630.1| - 8.8e-05 22.3 0.0 0.00011 22.0 0.0 1.2 1 0 0 1 1 1 1 Cyclophilin-like Alba PF01918.21 gi|307595314|ref|YP_003901631.1| - 5.6e-13 48.5 0.2 8e-13 48.0 0.2 1.3 1 0 0 1 1 1 1 Alba DUF3894 PF13033.6 gi|307595314|ref|YP_003901631.1| - 0.042 14.0 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3894) ATP_bind_1 PF03029.17 gi|307595315|ref|YP_003901632.1| - 1.2e-13 51.4 0.1 5.7e-08 32.8 0.0 2.4 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|307595315|ref|YP_003901632.1| - 6.1e-12 45.3 0.0 1.7e-11 43.9 0.0 1.6 1 1 0 1 1 1 1 ADP-ribosylation factor family Roc PF08477.13 gi|307595315|ref|YP_003901632.1| - 2.8e-08 34.0 0.0 4.5e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|307595315|ref|YP_003901632.1| - 1.5e-07 31.0 0.0 2.3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|307595315|ref|YP_003901632.1| - 4.2e-05 23.2 0.0 8.9e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 Ras family AAA_24 PF13479.6 gi|307595315|ref|YP_003901632.1| - 0.00011 22.0 0.0 0.00013 21.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.27 gi|307595315|ref|YP_003901632.1| - 0.00047 19.7 0.0 0.00079 19.0 0.0 1.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|307595315|ref|YP_003901632.1| - 0.00055 20.0 0.0 0.00084 19.4 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|307595315|ref|YP_003901632.1| - 0.0018 18.2 0.2 0.025 14.5 0.1 2.3 2 1 0 2 2 2 1 NTPase RsgA_GTPase PF03193.16 gi|307595315|ref|YP_003901632.1| - 0.0022 17.9 0.2 0.01 15.7 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_28 PF13521.6 gi|307595315|ref|YP_003901632.1| - 0.0032 17.7 0.0 0.0089 16.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|307595315|ref|YP_003901632.1| - 0.0038 17.2 0.0 0.0063 16.5 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE dNK PF01712.19 gi|307595315|ref|YP_003901632.1| - 0.0044 16.9 0.0 0.0065 16.3 0.0 1.3 1 0 0 1 1 1 1 Deoxynucleoside kinase Septin PF00735.18 gi|307595315|ref|YP_003901632.1| - 0.0052 16.1 0.4 0.0093 15.3 0.0 1.5 2 0 0 2 2 2 1 Septin AAA_18 PF13238.6 gi|307595315|ref|YP_003901632.1| - 0.0066 17.0 0.1 0.0086 16.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|307595315|ref|YP_003901632.1| - 0.011 15.7 0.0 0.13 12.2 0.0 2.1 1 1 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|307595315|ref|YP_003901632.1| - 0.015 15.8 0.0 0.019 15.5 0.0 1.3 1 1 0 1 1 1 0 ABC transporter AAA_29 PF13555.6 gi|307595315|ref|YP_003901632.1| - 0.029 14.1 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|307595315|ref|YP_003901632.1| - 0.04 14.1 0.0 0.05 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|307595315|ref|YP_003901632.1| - 0.047 13.4 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|307595315|ref|YP_003901632.1| - 0.05 13.5 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|307595315|ref|YP_003901632.1| - 0.061 13.6 0.0 0.099 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|307595315|ref|YP_003901632.1| - 0.062 12.9 0.0 0.094 12.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|307595315|ref|YP_003901632.1| - 0.07 12.5 0.0 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|307595315|ref|YP_003901632.1| - 0.075 12.1 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|307595315|ref|YP_003901632.1| - 0.094 12.4 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.12 gi|307595315|ref|YP_003901632.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.5 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region RNA12 PF10443.9 gi|307595315|ref|YP_003901632.1| - 0.17 10.6 0.0 0.23 10.1 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein Robl_LC7 PF03259.17 gi|307595316|ref|YP_003901633.1| - 0.0084 15.9 0.1 0.021 14.6 0.1 1.7 1 1 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|307595316|ref|YP_003901633.1| - 0.012 15.4 0.6 0.018 14.8 0.6 1.4 1 1 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting Arcadin_1 PF18653.1 gi|307595317|ref|YP_003901634.1| - 4.3e-33 113.7 0.4 4.7e-33 113.6 0.4 1.0 1 0 0 1 1 1 1 Arcadin 1 Molydop_binding PF01568.21 gi|307595317|ref|YP_003901634.1| - 0.042 13.9 0.0 0.077 13.0 0.0 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain RNA_pol_Rpb6 PF01192.22 gi|307595318|ref|YP_003901635.1| - 3.3e-13 49.3 0.0 4.7e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Pox_RNA_Pol_19 PF05320.12 gi|307595318|ref|YP_003901635.1| - 0.003 17.6 0.0 0.0035 17.3 0.0 1.1 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase 19 kDa subunit Cpn60_TCP1 PF00118.24 gi|307595319|ref|YP_003901636.1| - 3e-179 596.8 10.4 3.4e-179 596.6 10.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Peptidase_S24 PF00717.23 gi|307595320|ref|YP_003901637.1| - 0.00066 19.6 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like Acetyltransf_1 PF00583.25 gi|307595321|ref|YP_003901638.1| - 1.3e-14 54.5 0.1 1.7e-14 54.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|307595321|ref|YP_003901638.1| - 1.3e-07 31.9 0.1 2.4e-07 31.1 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|307595321|ref|YP_003901638.1| - 1e-05 25.4 0.0 1.7e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|307595321|ref|YP_003901638.1| - 6.9e-05 22.8 0.1 0.00012 22.0 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|307595321|ref|YP_003901638.1| - 0.00013 22.1 0.1 0.00019 21.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Complex1_51K PF01512.17 gi|307595321|ref|YP_003901638.1| - 0.052 13.4 0.1 0.089 12.7 0.1 1.3 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase 51 Kd subunit Acetyltransf_3 PF13302.7 gi|307595321|ref|YP_003901638.1| - 0.1 13.3 0.1 0.16 12.7 0.1 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PhosphMutase PF10143.9 gi|307595322|ref|YP_003901639.1| - 1.6e-48 164.8 0.0 2.3e-48 164.3 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|307595322|ref|YP_003901639.1| - 1.6e-37 129.2 0.0 1.9e-37 129.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|307595322|ref|YP_003901639.1| - 0.012 15.2 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.20 gi|307595322|ref|YP_003901639.1| - 0.2 10.6 0.1 1.1 8.1 0.0 1.8 1 1 0 1 1 1 0 Alkaline phosphatase CutA1 PF03091.15 gi|307595323|ref|YP_003901640.1| - 3.8e-35 119.7 0.0 4.2e-35 119.5 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Pept_S41_N PF18294.1 gi|307595323|ref|YP_003901640.1| - 0.09 12.8 0.1 0.39 10.7 0.0 2.0 2 0 0 2 2 2 0 Peptidase S41 N-terminal domain Aldo_ket_red PF00248.21 gi|307595324|ref|YP_003901641.1| - 7e-72 242.1 0.0 7.9e-72 241.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family TMP-TENI PF02581.17 gi|307595325|ref|YP_003901642.1| - 1.3e-56 190.7 0.1 1.5e-56 190.6 0.1 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|307595325|ref|YP_003901642.1| - 0.00013 21.5 0.8 0.00021 20.8 0.7 1.3 1 1 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|307595325|ref|YP_003901642.1| - 0.0015 17.9 0.2 0.0042 16.4 0.1 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|307595325|ref|YP_003901642.1| - 0.024 13.8 0.0 0.29 10.2 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF561) MS_channel PF00924.18 gi|307595326|ref|YP_003901643.1| - 5.5e-19 68.5 5.4 5.5e-19 68.5 5.4 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel Tmpp129 PF10272.9 gi|307595326|ref|YP_003901643.1| - 0.19 11.0 1.6 0.27 10.5 1.6 1.1 1 0 0 1 1 1 0 Putative transmembrane protein precursor FtsK_4TM PF13491.6 gi|307595326|ref|YP_003901643.1| - 2.7 7.7 16.8 0.32 10.7 11.4 1.9 2 0 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE Vma12 PF11712.8 gi|307595326|ref|YP_003901643.1| - 9.2 6.3 8.4 12 5.9 7.4 1.8 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase MMR_HSR1_C PF08438.10 gi|307595327|ref|YP_003901644.1| - 3.3e-36 124.3 0.0 5.2e-36 123.6 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|307595327|ref|YP_003901644.1| - 9.3e-19 67.6 0.0 3.3e-18 65.8 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|307595327|ref|YP_003901644.1| - 1.6e-07 31.0 0.1 3.6e-05 23.3 0.0 2.6 2 0 0 2 2 2 2 Ferrous iron transport protein B TGS PF02824.21 gi|307595327|ref|YP_003901644.1| - 1.5e-06 28.1 0.1 3e-06 27.2 0.1 1.5 1 0 0 1 1 1 1 TGS domain GTP_EFTU PF00009.27 gi|307595327|ref|YP_003901644.1| - 0.0012 18.4 0.2 0.12 11.9 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain tRNA-synt_1d PF00750.19 gi|307595328|ref|YP_003901645.1| - 1.6e-36 126.0 0.0 4e-25 88.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|307595328|ref|YP_003901645.1| - 2.8e-25 88.8 0.2 1.6e-24 86.4 0.0 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain Seryl_tRNA_N PF02403.22 gi|307595328|ref|YP_003901645.1| - 0.018 15.3 0.1 0.044 14.0 0.1 1.7 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain tRNA-synt_1e PF01406.19 gi|307595328|ref|YP_003901645.1| - 0.021 14.2 0.2 0.16 11.3 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|307595328|ref|YP_003901645.1| - 0.043 12.7 0.0 1.1 8.1 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|307595328|ref|YP_003901645.1| - 0.097 11.4 0.1 8.2 5.1 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (M) RNA_pol_Rpb5_C PF01191.19 gi|307595329|ref|YP_003901646.1| - 3.6e-28 97.2 0.0 4.5e-28 96.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.28 gi|307595330|ref|YP_003901647.1| - 3e-132 441.4 0.0 4.2e-132 440.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|307595330|ref|YP_003901647.1| - 1.5e-57 194.4 0.1 2.1e-57 193.9 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|307595330|ref|YP_003901647.1| - 8.9e-33 113.5 0.0 2e-32 112.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|307595330|ref|YP_003901647.1| - 2.7e-30 104.6 0.0 5.1e-30 103.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|307595330|ref|YP_003901647.1| - 7.9e-28 96.4 0.1 2.1e-27 95.1 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|307595330|ref|YP_003901647.1| - 1.9e-21 76.1 5.8 3.9e-21 75.1 3.0 2.7 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|307595330|ref|YP_003901647.1| - 7.2e-09 36.1 1.1 3.1e-08 34.1 1.1 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|307595331|ref|YP_003901648.1| - 2.9e-98 329.0 0.0 4.2e-98 328.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|307595331|ref|YP_003901648.1| - 4.7e-74 248.1 0.0 7.9e-74 247.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|307595331|ref|YP_003901648.1| - 2.8e-34 118.3 0.0 5.5e-34 117.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|307595331|ref|YP_003901648.1| - 3.4e-27 95.5 0.1 7.7e-27 94.4 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.17 gi|307595331|ref|YP_003901648.1| - 1e-26 92.9 0.0 2.1e-26 91.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 MqsA_antitoxin PF15731.5 gi|307595331|ref|YP_003901648.1| - 0.091 12.9 0.2 0.34 11.0 0.0 2.0 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA DZR PF12773.7 gi|307595331|ref|YP_003901648.1| - 0.092 12.8 1.6 4 7.5 1.6 2.3 1 1 0 1 1 1 0 Double zinc ribbon CpXC PF14353.6 gi|307595331|ref|YP_003901648.1| - 0.12 12.5 0.1 1.4 9.0 0.0 2.5 2 0 0 2 2 2 0 CpXC protein DpnD-PcfM PF14207.6 gi|307595331|ref|YP_003901648.1| - 0.12 12.2 0.8 0.5 10.3 0.8 2.1 1 0 0 1 1 1 0 DpnD/PcfM-like protein Zn_Tnp_IS1595 PF12760.7 gi|307595331|ref|YP_003901648.1| - 0.63 10.1 2.2 0.73 9.9 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|307595331|ref|YP_003901648.1| - 0.7 10.1 4.4 2.4 8.4 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|307595331|ref|YP_003901648.1| - 0.8 9.2 5.9 1.1 8.8 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|307595331|ref|YP_003901648.1| - 1.8 8.8 8.5 5.4 7.3 0.5 3.9 4 0 0 4 4 4 0 C4-type zinc ribbon domain Nudix_N_2 PF14803.6 gi|307595331|ref|YP_003901648.1| - 4.7 7.2 8.9 1.6 8.7 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal zf-ISL3 PF14690.6 gi|307595331|ref|YP_003901648.1| - 5.6 7.7 7.3 7.1 7.4 0.3 3.4 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_pol_Rpb1_5 PF04998.17 gi|307595332|ref|YP_003901649.1| - 3.5e-51 174.2 1.1 6.5e-51 173.3 1.1 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Syntaxin-6_N PF09177.11 gi|307595332|ref|YP_003901649.1| - 0.3 11.7 1.8 38 4.9 0.0 2.8 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Ribosomal_L7Ae PF01248.26 gi|307595333|ref|YP_003901650.1| - 1e-18 66.8 0.0 1.3e-18 66.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|307595334|ref|YP_003901651.1| - 5.8e-17 61.3 3.7 9.5e-11 41.4 0.3 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|307595334|ref|YP_003901651.1| - 4.2e-12 46.0 2.1 1.9e-11 43.9 0.3 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.29 gi|307595334|ref|YP_003901651.1| - 1.6e-05 24.6 1.3 0.0028 17.4 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|307595334|ref|YP_003901651.1| - 0.0018 18.1 0.2 0.0049 16.7 0.0 1.8 2 0 0 2 2 2 1 KH domain Ribosom_S12_S23 PF00164.25 gi|307595335|ref|YP_003901652.1| - 1.1e-42 144.3 0.4 1.3e-42 144.0 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 DUF5456 PF17539.2 gi|307595335|ref|YP_003901652.1| - 0.15 11.9 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5456) DUF4493 PF14900.6 gi|307595336|ref|YP_003901653.1| - 0.0044 16.9 0.3 0.0075 16.2 0.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4493) Phage_holin_3_5 PF16085.5 gi|307595336|ref|YP_003901653.1| - 0.14 12.3 0.1 0.18 11.9 0.1 1.3 1 0 0 1 1 1 0 Bacteriophage holin Hol, superfamily III Macro PF01661.21 gi|307595337|ref|YP_003901654.1| - 7.2e-38 129.3 0.0 9.9e-38 128.8 0.0 1.2 1 0 0 1 1 1 1 Macro domain ATPase_2 PF01637.18 gi|307595338|ref|YP_003901655.1| - 1e-19 71.4 0.0 1.5e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|307595338|ref|YP_003901655.1| - 7.2e-09 35.8 0.0 0.0027 17.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|307595338|ref|YP_003901655.1| - 1.9e-07 31.6 0.1 4.3e-07 30.5 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307595338|ref|YP_003901655.1| - 1.1e-06 29.0 0.0 2.6e-06 27.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain TPR_2 PF07719.17 gi|307595338|ref|YP_003901655.1| - 0.0058 16.7 0.1 4 7.8 0.0 3.2 2 0 0 2 2 2 2 Tetratricopeptide repeat AAA PF00004.29 gi|307595338|ref|YP_003901655.1| - 0.09 13.2 0.0 0.31 11.5 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|307595338|ref|YP_003901655.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MFS_1 PF07690.16 gi|307595340|ref|YP_003901657.1| - 1.8e-31 109.4 61.0 7.9e-18 64.5 35.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307595340|ref|YP_003901657.1| - 6.8e-05 21.9 0.3 6.8e-05 21.9 0.3 3.6 1 1 2 4 4 4 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|307595340|ref|YP_003901657.1| - 0.00039 19.4 26.8 0.064 12.1 26.3 3.8 1 1 0 1 1 1 1 MFS_1 like family Lig_chan PF00060.26 gi|307595340|ref|YP_003901657.1| - 1.9 8.3 5.2 2.2 8.1 0.1 2.3 2 0 0 2 2 2 0 Ligand-gated ion channel DUF3810 PF12725.7 gi|307595340|ref|YP_003901657.1| - 5.4 6.3 14.6 2.1 7.6 3.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) DrsE PF02635.15 gi|307595341|ref|YP_003901658.1| - 0.00023 21.5 0.0 0.00028 21.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DUF5071 PF16804.5 gi|307595343|ref|YP_003901660.1| - 0.0095 16.2 0.8 0.1 12.8 0.3 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF5071) DUF2573 PF10835.8 gi|307595343|ref|YP_003901660.1| - 0.035 14.4 3.3 1.3 9.4 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2573) CENP-X PF09415.10 gi|307595343|ref|YP_003901660.1| - 0.1 13.0 5.1 0.61 10.5 0.9 3.3 3 0 0 3 3 3 0 CENP-S associating Centromere protein X Snapin_Pallidin PF14712.6 gi|307595343|ref|YP_003901660.1| - 0.53 10.7 0.1 0.53 10.7 0.1 3.6 4 1 1 5 5 5 0 Snapin/Pallidin DUF4145 PF13643.6 gi|307595343|ref|YP_003901660.1| - 2.4 8.4 5.8 6.1 7.0 0.0 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4145) Bacillus_HBL PF05791.11 gi|307595343|ref|YP_003901660.1| - 3.4 7.5 10.2 0.78 9.5 1.8 3.0 3 0 0 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF1870 PF08965.10 gi|307595343|ref|YP_003901660.1| - 5.9 7.0 10.1 8.5 6.4 0.4 4.3 3 2 1 5 5 5 0 Domain of unknown function (DUF1870) PfkB PF00294.24 gi|307595344|ref|YP_003901661.1| - 3.6e-32 111.9 0.0 4.4e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Sugar_tr PF00083.24 gi|307595345|ref|YP_003901662.1| - 8.1e-14 51.3 23.9 2e-13 50.0 10.4 2.6 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|307595345|ref|YP_003901662.1| - 6.5e-12 45.0 51.1 9.8e-06 24.7 25.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily EzrA PF06160.12 gi|307595346|ref|YP_003901663.1| - 0.0002 19.7 0.3 0.00028 19.2 0.3 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Tropomyosin PF00261.20 gi|307595346|ref|YP_003901663.1| - 0.00068 19.1 0.2 0.0014 18.1 0.2 1.5 1 0 0 1 1 1 1 Tropomyosin EF-G-binding_N PF07299.11 gi|307595346|ref|YP_003901663.1| - 0.0016 18.9 2.4 0.018 15.6 0.1 2.5 2 1 1 3 3 3 1 Elongation factor G-binding protein, N-terminal SHE3 PF17078.5 gi|307595346|ref|YP_003901663.1| - 0.0023 17.7 0.5 0.0028 17.4 0.5 1.2 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 RmuC PF02646.16 gi|307595346|ref|YP_003901663.1| - 0.0028 16.8 0.1 0.0045 16.2 0.1 1.3 1 0 0 1 1 1 1 RmuC family DUF4795 PF16043.5 gi|307595346|ref|YP_003901663.1| - 0.0034 17.0 1.8 0.0036 16.9 0.3 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4795) Phage_Mu_Gam PF07352.12 gi|307595346|ref|YP_003901663.1| - 0.0034 17.3 0.8 0.0046 16.9 0.1 1.6 2 0 0 2 2 1 1 Bacteriophage Mu Gam like protein DHC_N2 PF08393.13 gi|307595346|ref|YP_003901663.1| - 0.0035 16.5 0.6 0.006 15.7 0.6 1.3 1 0 0 1 1 1 1 Dynein heavy chain, N-terminal region 2 Baculo_PEP_C PF04513.12 gi|307595346|ref|YP_003901663.1| - 0.0069 16.4 0.0 0.025 14.6 0.0 2.0 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Occludin_ELL PF07303.13 gi|307595346|ref|YP_003901663.1| - 0.007 17.1 0.4 0.015 16.0 0.4 1.6 1 0 0 1 1 1 1 Occludin homology domain DUF1664 PF07889.12 gi|307595346|ref|YP_003901663.1| - 0.009 16.1 1.5 0.084 12.9 0.3 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF1664) DUF3552 PF12072.8 gi|307595346|ref|YP_003901663.1| - 0.0098 15.3 1.1 0.0098 15.3 1.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF3552) XhlA PF10779.9 gi|307595346|ref|YP_003901663.1| - 0.023 14.9 1.2 0.088 13.0 1.2 2.1 1 0 0 1 1 1 0 Haemolysin XhlA Apolipoprotein PF01442.18 gi|307595346|ref|YP_003901663.1| - 0.026 14.4 0.0 0.046 13.6 0.0 1.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain TipAS PF07739.13 gi|307595346|ref|YP_003901663.1| - 0.026 15.1 0.1 0.66 10.5 0.0 2.2 2 0 0 2 2 2 0 TipAS antibiotic-recognition domain DUF16 PF01519.16 gi|307595346|ref|YP_003901663.1| - 0.027 14.9 1.9 0.26 11.8 0.5 2.5 1 1 2 3 3 3 0 Protein of unknown function DUF16 IFT57 PF10498.9 gi|307595346|ref|YP_003901663.1| - 0.028 13.4 0.0 0.039 12.9 0.0 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Sigma70_ner PF04546.13 gi|307595346|ref|YP_003901663.1| - 0.029 14.2 2.3 0.042 13.7 0.2 2.1 2 1 0 2 2 2 0 Sigma-70, non-essential region FapA PF03961.13 gi|307595346|ref|YP_003901663.1| - 0.029 13.0 0.1 0.047 12.3 0.1 1.4 1 0 0 1 1 1 0 Flagellar Assembly Protein A Fib_alpha PF08702.10 gi|307595346|ref|YP_003901663.1| - 0.041 14.1 0.1 0.064 13.5 0.1 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family HSBP1 PF06825.12 gi|307595346|ref|YP_003901663.1| - 0.053 13.4 2.0 4.5 7.2 2.4 2.8 1 1 1 2 2 2 0 Heat shock factor binding protein 1 Prefoldin_2 PF01920.20 gi|307595346|ref|YP_003901663.1| - 0.07 13.1 1.3 0.28 11.1 0.9 2.2 1 1 1 2 2 2 0 Prefoldin subunit BLOC1_2 PF10046.9 gi|307595346|ref|YP_003901663.1| - 0.076 13.3 0.2 0.26 11.6 0.2 1.9 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Med4 PF10018.9 gi|307595346|ref|YP_003901663.1| - 0.082 12.6 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF2089 PF09862.9 gi|307595346|ref|YP_003901663.1| - 0.085 12.9 5.0 0.16 12.0 1.0 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF2089) TMPIT PF07851.13 gi|307595346|ref|YP_003901663.1| - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 TMPIT-like protein APG17 PF04108.12 gi|307595346|ref|YP_003901663.1| - 0.14 11.3 2.9 0.38 9.8 0.3 2.2 1 1 2 3 3 3 0 Autophagy protein Apg17 Lipoprotein_2 PF00921.17 gi|307595346|ref|YP_003901663.1| - 0.2 11.1 0.3 0.49 9.9 0.1 1.7 1 1 1 2 2 2 0 Borrelia lipoprotein DLP_helical PF18709.1 gi|307595346|ref|YP_003901663.1| - 0.33 10.1 3.0 0.3 10.2 2.1 1.5 1 1 0 1 1 1 0 Dynamin-like helical domain KxDL PF10241.9 gi|307595346|ref|YP_003901663.1| - 0.61 10.4 2.8 0.92 9.8 0.6 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein FTCD_C PF04961.12 gi|307595346|ref|YP_003901663.1| - 0.78 9.5 1.8 16 5.2 0.3 2.5 2 1 1 3 3 3 0 Formiminotransferase-cyclodeaminase DUF1366 PF07104.11 gi|307595346|ref|YP_003901663.1| - 1.2 8.9 4.0 1.8 8.2 1.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1366) DUF4375 PF14300.6 gi|307595346|ref|YP_003901663.1| - 2 8.7 6.4 15 5.9 3.7 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4375) Vpu PF00558.19 gi|307595346|ref|YP_003901663.1| - 3.1 7.6 5.3 15 5.5 1.0 2.6 1 1 1 2 2 2 0 Vpu protein MtrG PF04210.13 gi|307595346|ref|YP_003901663.1| - 6.8 6.6 6.1 36 4.3 3.0 3.1 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G eRF1_3 PF03465.15 gi|307595347|ref|YP_003901664.1| - 7.9e-17 61.8 0.1 3.9e-16 59.5 0.1 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|307595347|ref|YP_003901664.1| - 2.2e-13 50.4 0.0 3.3e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 STN PF07660.14 gi|307595347|ref|YP_003901664.1| - 0.17 11.7 0.0 0.4 10.5 0.0 1.7 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain Auto_anti-p27 PF06677.12 gi|307595348|ref|YP_003901665.1| - 4.2e-14 52.4 1.5 6.2e-14 51.9 1.5 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.14 gi|307595348|ref|YP_003901665.1| - 5e-06 26.8 0.1 0.025 14.9 0.0 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.11 gi|307595348|ref|YP_003901665.1| - 0.00024 21.0 0.1 0.00039 20.3 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|307595348|ref|YP_003901665.1| - 0.00024 20.5 2.0 0.00045 19.7 2.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|307595348|ref|YP_003901665.1| - 0.00025 20.9 1.7 0.00035 20.4 1.7 1.2 1 0 0 1 1 1 1 SprT-like zinc ribbon domain DZR PF12773.7 gi|307595348|ref|YP_003901665.1| - 0.0016 18.4 0.2 0.0025 17.8 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-FPG_IleRS PF06827.14 gi|307595348|ref|YP_003901665.1| - 0.0042 16.9 1.9 0.007 16.2 1.9 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DNA_ligase_ZBD PF03119.16 gi|307595348|ref|YP_003901665.1| - 0.0043 17.1 2.8 0.0094 16.0 2.8 1.7 1 1 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|307595348|ref|YP_003901665.1| - 0.005 16.9 0.5 3.6 7.8 0.1 2.4 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|307595348|ref|YP_003901665.1| - 0.023 14.7 0.2 0.032 14.2 0.2 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|307595348|ref|YP_003901665.1| - 0.032 14.0 0.1 0.06 13.1 0.1 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|307595348|ref|YP_003901665.1| - 0.035 14.1 0.1 0.057 13.4 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_9 PF14369.6 gi|307595348|ref|YP_003901665.1| - 0.044 14.1 0.2 3.1 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon Nudix_N_2 PF14803.6 gi|307595348|ref|YP_003901665.1| - 0.044 13.7 0.2 3.3 7.7 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.13 gi|307595348|ref|YP_003901665.1| - 0.047 13.4 0.9 0.84 9.4 0.3 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|307595348|ref|YP_003901665.1| - 0.051 13.3 2.0 0.68 9.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain C1_2 PF03107.16 gi|307595348|ref|YP_003901665.1| - 0.053 13.8 0.1 0.084 13.2 0.1 1.3 1 0 0 1 1 1 0 C1 domain Sgf11 PF08209.11 gi|307595348|ref|YP_003901665.1| - 0.055 13.0 1.4 0.73 9.5 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) CpXC PF14353.6 gi|307595348|ref|YP_003901665.1| - 0.086 12.9 0.4 0.14 12.2 0.4 1.5 1 1 0 1 1 1 0 CpXC protein zf-TFIIB PF13453.6 gi|307595348|ref|YP_003901665.1| - 0.13 11.7 1.3 0.29 10.5 1.3 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|307595348|ref|YP_003901665.1| - 0.25 11.0 0.5 7.7 6.2 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|307595348|ref|YP_003901665.1| - 0.29 10.6 3.4 1.3 8.5 3.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|307595348|ref|YP_003901665.1| - 0.31 10.8 2.5 13 5.6 0.1 2.8 2 1 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|307595348|ref|YP_003901665.1| - 1.2 9.1 6.5 1.8 8.5 3.6 2.0 1 1 1 2 2 2 0 HIT zinc finger Oxidored_FMN PF00724.20 gi|307595349|ref|YP_003901666.1| - 1.1e-63 215.6 0.0 1.5e-63 215.1 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family NAD_binding_8 PF13450.6 gi|307595349|ref|YP_003901666.1| - 4e-09 36.6 0.0 8.8e-09 35.5 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|307595349|ref|YP_003901666.1| - 1.5e-08 35.1 1.3 2.7e-05 24.7 0.8 3.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|307595349|ref|YP_003901666.1| - 5.5e-06 25.8 0.0 4.3e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|307595349|ref|YP_003901666.1| - 2.5e-05 24.0 0.1 0.00042 20.0 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Dus PF01207.17 gi|307595349|ref|YP_003901666.1| - 5e-05 22.5 0.0 0.00011 21.4 0.0 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) GIDA PF01134.22 gi|307595349|ref|YP_003901666.1| - 0.00044 19.5 0.1 0.00063 18.9 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|307595349|ref|YP_003901666.1| - 0.00053 19.9 0.0 0.00089 19.2 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|307595349|ref|YP_003901666.1| - 0.0016 17.6 0.2 0.0023 17.1 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|307595349|ref|YP_003901666.1| - 0.0018 17.7 0.3 0.003 17.0 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase PcrB PF01884.17 gi|307595349|ref|YP_003901666.1| - 0.0025 17.3 0.0 0.0094 15.4 0.0 1.9 2 0 0 2 2 2 1 PcrB family HI0933_like PF03486.14 gi|307595349|ref|YP_003901666.1| - 0.0085 14.8 0.6 0.016 14.0 0.6 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|307595349|ref|YP_003901666.1| - 0.011 15.0 0.9 0.017 14.4 0.9 1.2 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.21 gi|307595349|ref|YP_003901666.1| - 0.024 13.9 0.0 0.042 13.1 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|307595349|ref|YP_003901666.1| - 0.04 13.2 0.0 0.066 12.5 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Trp_syntA PF00290.20 gi|307595349|ref|YP_003901666.1| - 0.1 11.5 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Thi4 PF01946.17 gi|307595349|ref|YP_003901666.1| - 0.13 11.5 0.2 0.24 10.6 0.2 1.4 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.6 gi|307595349|ref|YP_003901666.1| - 0.21 10.8 0.0 0.4 9.9 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Aldo_ket_red PF00248.21 gi|307595350|ref|YP_003901667.1| - 6.1e-63 212.7 0.0 2.1e-61 207.7 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family ECH_1 PF00378.20 gi|307595351|ref|YP_003901668.1| - 1.7e-21 76.7 0.0 2.2e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|307595351|ref|YP_003901668.1| - 4.6e-17 62.5 0.0 5e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Cytochrom_B_N_2 PF13631.6 gi|307595352|ref|YP_003901669.1| - 1.3e-41 142.4 5.6 1.3e-41 142.4 5.6 3.1 3 0 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|307595352|ref|YP_003901669.1| - 3.9e-20 72.5 13.1 1.1e-19 71.0 13.1 1.8 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|307595352|ref|YP_003901669.1| - 5e-05 23.5 1.9 5e-05 23.5 1.9 3.5 5 1 0 5 5 5 1 Cytochrome b(C-terminal)/b6/petD SecG PF03840.14 gi|307595352|ref|YP_003901669.1| - 0.31 11.1 0.1 0.31 11.1 0.1 4.2 4 0 0 4 4 4 0 Preprotein translocase SecG subunit DUF2254 PF10011.9 gi|307595352|ref|YP_003901669.1| - 0.55 9.0 6.9 0.042 12.7 1.3 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2254) Rieske PF00355.26 gi|307595353|ref|YP_003901670.1| - 9.4e-12 44.7 0.0 1.6e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain CytB6-F_Fe-S PF08802.10 gi|307595353|ref|YP_003901670.1| - 0.032 14.2 0.5 0.1 12.6 0.5 1.9 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit EB_dh PF09459.10 gi|307595354|ref|YP_003901671.1| - 4.7e-59 200.4 0.0 5.5e-59 200.1 0.0 1.0 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase HTH_5 PF01022.20 gi|307595357|ref|YP_003901674.1| - 8.2e-12 44.8 0.2 1.4e-11 44.0 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|307595357|ref|YP_003901674.1| - 5.7e-06 26.3 0.1 1.1e-05 25.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|307595357|ref|YP_003901674.1| - 3.7e-05 23.2 0.2 6.4e-05 22.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|307595357|ref|YP_003901674.1| - 5.2e-05 23.1 0.1 8e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|307595357|ref|YP_003901674.1| - 6.5e-05 22.7 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|307595357|ref|YP_003901674.1| - 0.00018 21.4 0.0 0.00031 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|307595357|ref|YP_003901674.1| - 0.001 18.9 0.1 0.0018 18.2 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|307595357|ref|YP_003901674.1| - 0.0011 18.9 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|307595357|ref|YP_003901674.1| - 0.0037 17.3 0.0 0.0056 16.8 0.0 1.2 1 0 0 1 1 1 1 DprA winged helix domain HTH_12 PF08461.10 gi|307595357|ref|YP_003901674.1| - 0.0043 17.0 0.4 0.0076 16.2 0.4 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain MarR PF01047.22 gi|307595357|ref|YP_003901674.1| - 0.0069 16.3 0.1 0.012 15.6 0.1 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|307595357|ref|YP_003901674.1| - 0.012 15.9 0.0 0.019 15.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|307595357|ref|YP_003901674.1| - 0.021 14.6 0.1 0.038 13.8 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Sigma70_r4_2 PF08281.12 gi|307595357|ref|YP_003901674.1| - 0.023 14.4 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 DUF4423 PF14394.6 gi|307595357|ref|YP_003901674.1| - 0.024 14.4 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|307595357|ref|YP_003901674.1| - 0.043 14.3 0.2 0.08 13.5 0.2 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|307595357|ref|YP_003901674.1| - 0.048 13.8 0.0 0.089 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|307595357|ref|YP_003901674.1| - 0.05 13.6 0.1 0.098 12.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|307595357|ref|YP_003901674.1| - 0.056 13.6 0.0 0.096 12.9 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2089 PF09862.9 gi|307595357|ref|YP_003901674.1| - 0.057 13.5 0.1 0.084 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) TnsD PF15978.5 gi|307595357|ref|YP_003901674.1| - 0.07 12.1 0.0 0.07 12.1 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D FaeA PF04703.12 gi|307595357|ref|YP_003901674.1| - 0.071 13.5 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein GerE PF00196.19 gi|307595357|ref|YP_003901674.1| - 0.091 12.3 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.6 gi|307595357|ref|YP_003901674.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FeoC PF09012.10 gi|307595357|ref|YP_003901674.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator Fe_dep_repress PF01325.19 gi|307595357|ref|YP_003901674.1| - 0.12 12.6 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DrsE PF02635.15 gi|307595359|ref|YP_003901676.1| - 2.8e-05 24.4 0.0 7.1e-05 23.2 0.0 1.6 1 1 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|307595359|ref|YP_003901676.1| - 0.001 19.0 0.3 0.72 9.7 0.0 2.1 2 0 0 2 2 2 2 DsrE/DsrF/DrsH-like family TusA PF01206.17 gi|307595360|ref|YP_003901677.1| - 5.6e-24 83.8 0.0 6.4e-24 83.6 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|307595360|ref|YP_003901677.1| - 0.0013 18.6 0.0 0.034 14.0 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) Acylphosphatase PF00708.18 gi|307595361|ref|YP_003901678.1| - 3.3e-24 85.1 0.0 7.2e-24 84.0 0.0 1.6 1 0 0 1 1 1 1 Acylphosphatase TusA PF01206.17 gi|307595362|ref|YP_003901679.1| - 7.5e-15 54.5 0.1 8.3e-15 54.4 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|307595362|ref|YP_003901679.1| - 0.00047 20.0 0.0 0.0011 18.7 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) PseudoU_synth_1 PF01416.20 gi|307595363|ref|YP_003901680.1| - 9.2e-18 64.7 0.0 6.3e-16 58.8 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase MCD_N PF17408.2 gi|307595364|ref|YP_003901681.1| - 0.12 12.6 0.3 0.84 9.8 0.0 2.4 2 1 1 3 3 3 0 Malonyl-CoA decarboxylase N-terminal domain Radical_SAM PF04055.21 gi|307595365|ref|YP_003901682.1| - 8.8e-16 58.7 0.0 1.9e-15 57.6 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|307595365|ref|YP_003901682.1| - 0.0082 16.2 0.0 0.022 14.8 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain DUF945 PF06097.11 gi|307595365|ref|YP_003901682.1| - 0.019 14.1 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) TAL_effector PF03377.13 gi|307595365|ref|YP_003901682.1| - 0.064 13.6 0.0 0.16 12.3 0.0 1.7 1 0 0 1 1 1 0 TAL effector repeat eIF-6 PF01912.18 gi|307595366|ref|YP_003901683.1| - 2.4e-60 203.3 6.0 2.9e-60 203.1 6.0 1.1 1 0 0 1 1 1 1 eIF-6 family Nit_Regul_Hom PF10126.9 gi|307595366|ref|YP_003901683.1| - 0.037 14.1 1.1 0.29 11.2 0.1 2.6 1 1 2 3 3 3 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF402 PF04167.13 gi|307595367|ref|YP_003901684.1| - 4e-12 46.1 0.8 9.3e-12 45.0 0.8 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|307595367|ref|YP_003901684.1| - 0.0034 16.8 0.0 0.0055 16.2 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family Exo84_C PF16528.5 gi|307595367|ref|YP_003901684.1| - 0.17 11.7 0.4 2.2 8.1 0.1 2.1 2 0 0 2 2 2 0 Exocyst component 84 C-terminal Ribosomal_S12 PF17487.2 gi|307595368|ref|YP_003901685.1| - 0.014 16.1 5.8 0.014 16.1 5.8 1.7 1 1 1 2 2 2 0 Ribosomal protein S12 Cytochrom_B_C PF00032.17 gi|307595368|ref|YP_003901685.1| - 0.26 11.6 8.3 0.49 10.7 7.7 1.6 1 1 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD OST3_OST6 PF04756.13 gi|307595368|ref|YP_003901685.1| - 0.62 9.4 7.9 1.2 8.4 7.9 1.6 1 1 0 1 1 1 0 OST3 / OST6 family, transporter family Wzy_C PF04932.15 gi|307595368|ref|YP_003901685.1| - 1.4 8.5 14.4 1.7 8.3 14.4 1.2 1 0 0 1 1 1 0 O-Antigen ligase MAP17 PF15807.5 gi|307595368|ref|YP_003901685.1| - 2.9 8.1 4.5 0.63 10.3 0.3 1.9 1 1 1 2 2 2 0 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 MARVEL PF01284.23 gi|307595368|ref|YP_003901685.1| - 6.7 6.7 12.1 12 5.9 12.1 1.5 1 1 0 1 1 1 0 Membrane-associating domain PaREP1 PF05942.11 gi|307595369|ref|YP_003901686.1| - 4.1e-32 110.5 2.4 6.7e-32 109.8 0.9 1.8 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|307595369|ref|YP_003901686.1| - 0.023 14.8 0.3 0.046 13.9 0.3 1.5 1 0 0 1 1 1 0 HEPN domain Hydant_A_N PF05378.13 gi|307595369|ref|YP_003901686.1| - 0.087 12.5 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region AAA_31 PF13614.6 gi|307595370|ref|YP_003901687.1| - 1.6e-10 41.2 0.0 2.2e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|307595370|ref|YP_003901687.1| - 5.1e-07 29.8 0.0 6.5e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|307595370|ref|YP_003901687.1| - 0.00011 21.7 0.3 0.00018 21.0 0.3 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|307595370|ref|YP_003901687.1| - 0.0012 18.2 0.2 0.004 16.5 0.2 1.8 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|307595370|ref|YP_003901687.1| - 0.0031 17.0 0.0 0.0038 16.8 0.0 1.1 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Metallophos_2 PF12850.7 gi|307595371|ref|YP_003901688.1| - 2.1e-08 34.5 0.1 3e-08 34.0 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|307595371|ref|YP_003901688.1| - 8.7e-07 29.6 0.2 5.4e-05 23.8 0.1 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase TIM PF00121.18 gi|307595374|ref|YP_003901691.1| - 2.2e-11 43.6 0.0 1.1e-09 38.0 0.0 2.1 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|307595374|ref|YP_003901691.1| - 4.8e-08 32.6 0.1 6.4e-08 32.2 0.1 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|307595374|ref|YP_003901691.1| - 8.2e-07 28.4 0.0 1.9e-06 27.2 0.0 1.6 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|307595374|ref|YP_003901691.1| - 8.2e-06 25.4 0.1 1.8e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|307595374|ref|YP_003901691.1| - 2.3e-05 23.4 0.2 4e-05 22.6 0.2 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain NMO PF03060.15 gi|307595374|ref|YP_003901691.1| - 0.0012 18.3 0.1 0.002 17.6 0.1 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|307595374|ref|YP_003901691.1| - 0.012 14.7 0.1 0.031 13.3 0.0 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase NanE PF04131.14 gi|307595374|ref|YP_003901691.1| - 0.027 13.7 0.1 0.041 13.1 0.1 1.3 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|307595374|ref|YP_003901691.1| - 0.036 13.3 0.0 0.051 12.8 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF1129 PF06570.11 gi|307595375|ref|YP_003901692.1| - 0.012 15.1 0.5 0.012 15.1 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF2721 PF11026.8 gi|307595375|ref|YP_003901692.1| - 0.056 13.3 0.3 0.056 13.3 0.3 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2721) Aconitase PF00330.20 gi|307595376|ref|YP_003901693.1| - 8.6e-166 552.5 0.0 1.1e-165 552.1 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|307595376|ref|YP_003901693.1| - 5.4e-37 127.0 0.0 8.8e-37 126.4 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Ykof PF07615.11 gi|307595378|ref|YP_003901695.1| - 0.051 14.0 0.0 0.096 13.2 0.0 1.4 1 0 0 1 1 1 0 YKOF-related Family NAD_kinase PF01513.21 gi|307595380|ref|YP_003901697.1| - 4.3e-32 111.5 0.8 6.7e-32 110.9 0.8 1.3 1 0 0 1 1 1 1 ATP-NAD kinase HTH_24 PF13412.6 gi|307595380|ref|YP_003901697.1| - 3.1e-05 23.4 1.4 7.7e-05 22.2 1.4 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|307595380|ref|YP_003901697.1| - 0.00013 21.8 0.2 0.00027 20.8 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_9 PF08221.11 gi|307595380|ref|YP_003901697.1| - 0.00015 21.8 0.1 0.00034 20.7 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_11 PF08279.12 gi|307595380|ref|YP_003901697.1| - 0.00086 19.2 0.8 0.002 18.1 0.8 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|307595380|ref|YP_003901697.1| - 0.00095 19.0 0.1 0.0026 17.6 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|307595380|ref|YP_003901697.1| - 0.0064 16.1 0.3 0.019 14.6 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|307595380|ref|YP_003901697.1| - 0.025 14.5 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 gi|307595380|ref|YP_003901697.1| - 0.037 13.8 0.3 0.072 12.8 0.3 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|307595380|ref|YP_003901697.1| - 0.039 13.8 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|307595380|ref|YP_003901697.1| - 0.1 13.1 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain RNA_pol_L_2 PF13656.6 gi|307595383|ref|YP_003901700.1| - 2.2e-18 65.8 0.0 2.6e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2976 PF11190.8 gi|307595385|ref|YP_003901702.1| - 0.063 13.1 0.3 0.11 12.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) DUF4245 PF14030.6 gi|307595385|ref|YP_003901702.1| - 0.085 12.9 0.5 0.16 12.0 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4245) LEA_2 PF03168.13 gi|307595385|ref|YP_003901702.1| - 0.09 13.3 0.4 0.25 11.9 0.4 1.7 1 1 0 1 1 1 0 Late embryogenesis abundant protein CBS PF00571.28 gi|307595386|ref|YP_003901703.1| - 2.2e-43 146.5 14.6 2.1e-12 47.3 0.1 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|307595386|ref|YP_003901703.1| - 0.0061 17.3 3.6 0.032 15.0 1.6 2.4 2 0 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein GAF PF01590.26 gi|307595386|ref|YP_003901703.1| - 0.1 13.2 0.1 12 6.6 0.0 3.0 2 1 1 3 3 3 0 GAF domain DUF2122 PF09895.9 gi|307595387|ref|YP_003901704.1| - 1.4e-29 102.6 0.1 1.9e-29 102.1 0.1 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) Ysc84 PF04366.12 gi|307595387|ref|YP_003901704.1| - 0.038 13.8 0.0 0.17 11.7 0.0 1.7 1 1 1 2 2 2 0 Las17-binding protein actin regulator Oxidored_q4 PF00507.19 gi|307595388|ref|YP_003901705.1| - 1.6e-09 37.8 0.9 1.6e-09 37.8 0.9 1.9 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Pox_P21 PF05313.12 gi|307595388|ref|YP_003901705.1| - 0.41 10.2 12.2 1.4 8.5 6.3 2.1 2 0 0 2 2 2 0 Poxvirus P21 membrane protein VirB3 PF05101.13 gi|307595388|ref|YP_003901705.1| - 0.84 9.9 15.0 0.38 11.0 1.5 2.3 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein Complex1_30kDa PF00329.19 gi|307595389|ref|YP_003901706.1| - 1.4e-27 96.8 0.1 2.3e-27 96.1 0.1 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|307595389|ref|YP_003901706.1| - 3.2e-20 72.3 0.1 5.8e-20 71.5 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|307595390|ref|YP_003901707.1| - 7.4e-89 297.4 0.0 9.9e-89 297.0 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NurA PF09376.10 gi|307595392|ref|YP_003901709.1| - 5.6e-17 62.3 0.0 9.9e-17 61.4 0.0 1.4 1 1 0 1 1 1 1 NurA domain ParA PF10609.9 gi|307595394|ref|YP_003901711.1| - 0.0044 16.5 0.3 0.018 14.5 0.1 2.0 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Zeta_toxin PF06414.12 gi|307595394|ref|YP_003901711.1| - 0.0084 15.4 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.14 gi|307595394|ref|YP_003901711.1| - 0.012 15.6 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|307595394|ref|YP_003901711.1| - 0.014 14.4 0.1 0.027 13.5 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|307595394|ref|YP_003901711.1| - 0.019 14.2 0.0 0.04 13.2 0.0 1.6 1 0 0 1 1 1 0 ATPase MipZ CbiA PF01656.23 gi|307595394|ref|YP_003901711.1| - 0.085 12.9 2.0 0.23 11.5 0.9 2.3 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain Pyridox_ox_2 PF12900.7 gi|307595395|ref|YP_003901712.1| - 1.9e-35 121.9 0.0 2.4e-35 121.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Acyl-CoA_dh_1 PF00441.24 gi|307595396|ref|YP_003901713.1| - 7.9e-16 58.6 0.0 1.5e-15 57.7 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|307595396|ref|YP_003901713.1| - 0.00012 22.3 0.0 0.00021 21.6 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|307595397|ref|YP_003901714.1| - 2.4e-20 72.5 0.0 3.9e-20 71.9 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|307595397|ref|YP_003901714.1| - 4.2e-17 62.8 0.0 1.4e-16 61.1 0.0 1.9 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|307595397|ref|YP_003901714.1| - 1.5e-15 57.7 1.2 9e-14 51.9 1.2 2.2 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.28 gi|307595398|ref|YP_003901715.1| - 3.9e-84 282.7 0.0 5.1e-84 282.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|307595398|ref|YP_003901715.1| - 4.4e-22 78.9 1.8 3.2e-21 76.1 0.7 2.5 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Thiolase_C PF02803.18 gi|307595399|ref|YP_003901716.1| - 1.5e-06 27.8 0.1 5.9e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|307595399|ref|YP_003901716.1| - 0.0025 17.2 0.0 0.0054 16.1 0.0 1.4 1 1 0 1 1 1 1 Thiolase, N-terminal domain DUF35_N PF12172.8 gi|307595400|ref|YP_003901717.1| - 8.8e-07 28.7 4.2 1.4e-06 28.0 4.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|307595400|ref|YP_003901717.1| - 3.6e-06 26.9 0.7 6.8e-06 26.0 0.7 1.4 1 1 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated HypA PF01155.19 gi|307595400|ref|YP_003901717.1| - 3.4e-05 23.8 0.1 4.5e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|307595400|ref|YP_003901717.1| - 0.00016 20.7 0.3 0.00018 20.5 0.3 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase zf-TFIIB PF13453.6 gi|307595400|ref|YP_003901717.1| - 0.0016 17.7 0.1 1.2 8.5 0.0 2.3 2 0 0 2 2 2 2 Transcription factor zinc-finger zf-ISL3 PF14690.6 gi|307595400|ref|YP_003901717.1| - 0.0062 17.2 0.8 0.15 12.8 0.0 2.3 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin_2 PF18073.1 gi|307595400|ref|YP_003901717.1| - 0.0074 16.0 3.6 0.011 15.4 3.6 1.3 1 0 0 1 1 1 1 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|307595400|ref|YP_003901717.1| - 0.01 15.9 3.5 0.025 14.7 3.5 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_L32p PF01783.23 gi|307595400|ref|YP_003901717.1| - 0.011 16.0 0.9 0.017 15.4 0.9 1.2 1 0 0 1 1 1 0 Ribosomal L32p protein family DZR PF12773.7 gi|307595400|ref|YP_003901717.1| - 0.011 15.7 0.3 0.016 15.2 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|307595400|ref|YP_003901717.1| - 0.016 14.6 2.4 0.24 10.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TackOD1 PF18551.1 gi|307595400|ref|YP_003901717.1| - 0.017 14.8 0.1 0.022 14.4 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 FdhE PF04216.12 gi|307595400|ref|YP_003901717.1| - 0.017 15.0 0.2 0.023 14.6 0.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation NOB1_Zn_bind PF08772.11 gi|307595400|ref|YP_003901717.1| - 0.022 14.9 0.7 0.044 14.0 0.7 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.12 gi|307595400|ref|YP_003901717.1| - 0.023 14.2 0.7 0.26 10.8 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.6 gi|307595400|ref|YP_003901717.1| - 0.035 13.8 4.7 2.9 7.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain NfeD PF01957.18 gi|307595400|ref|YP_003901717.1| - 0.051 14.0 0.2 0.082 13.3 0.2 1.4 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding UPF0547 PF10571.9 gi|307595400|ref|YP_003901717.1| - 0.23 11.6 3.8 2.2 8.4 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1936 PF09151.10 gi|307595400|ref|YP_003901717.1| - 0.24 11.4 2.5 1.8 8.5 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zinc_ribbon_2 PF13240.6 gi|307595400|ref|YP_003901717.1| - 0.25 11.1 3.8 1.3 8.8 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|307595400|ref|YP_003901717.1| - 0.27 11.0 4.2 1.6 8.5 0.3 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|307595400|ref|YP_003901717.1| - 0.62 10.1 4.6 2 8.5 0.5 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|307595400|ref|YP_003901717.1| - 6.9 6.7 8.7 17 5.5 0.7 3.0 3 1 0 4 4 4 0 zinc-ribbon domain 3HCDH_N PF02737.18 gi|307595401|ref|YP_003901718.1| - 1.8e-58 197.4 0.0 2.6e-58 196.8 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|307595401|ref|YP_003901718.1| - 9.7e-22 77.4 0.7 2.4e-13 50.5 0.2 3.6 3 1 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|307595401|ref|YP_003901718.1| - 1.4e-05 25.3 0.1 3.7e-05 23.9 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|307595401|ref|YP_003901718.1| - 0.0067 15.8 0.0 0.014 14.7 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|307595401|ref|YP_003901718.1| - 0.0068 16.4 0.0 0.023 14.7 0.0 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.6 gi|307595401|ref|YP_003901718.1| - 0.082 13.4 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.21 gi|307595401|ref|YP_003901718.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 ThiF family B3_4 PF03483.17 gi|307595402|ref|YP_003901719.1| - 1.3e-23 83.6 0.0 1.7e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain ECR1_N PF14382.6 gi|307595403|ref|YP_003901720.1| - 4.3e-07 29.6 0.1 7.8e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region zf-ribbon_3 PF13248.6 gi|307595403|ref|YP_003901720.1| - 5.9e-06 25.5 1.1 0.1 12.1 0.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|307595403|ref|YP_003901720.1| - 0.00038 20.3 1.0 0.00067 19.5 1.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|307595403|ref|YP_003901720.1| - 0.00061 19.4 1.9 0.36 10.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-RING_7 PF02591.15 gi|307595403|ref|YP_003901720.1| - 0.00097 19.3 0.3 0.15 12.3 0.0 2.5 2 0 0 2 2 2 1 C4-type zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|307595403|ref|YP_003901720.1| - 0.0019 18.1 0.6 2 8.4 0.1 2.6 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|307595403|ref|YP_003901720.1| - 0.0027 17.8 2.1 0.0057 16.7 2.1 1.6 1 1 0 1 1 1 1 Zinc ribbon domain DUF35_N PF12172.8 gi|307595403|ref|YP_003901720.1| - 0.0027 17.5 2.3 0.65 9.9 0.3 2.7 3 0 0 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.13 gi|307595403|ref|YP_003901720.1| - 0.0031 17.2 0.9 0.01 15.5 0.9 1.8 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|307595403|ref|YP_003901720.1| - 0.0043 17.0 0.2 0.0072 16.3 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|307595403|ref|YP_003901720.1| - 0.0053 16.4 4.5 0.013 15.2 4.5 1.7 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|307595403|ref|YP_003901720.1| - 0.015 15.3 0.2 0.027 14.4 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ACC PF17848.1 gi|307595403|ref|YP_003901720.1| - 0.015 15.4 0.8 2 8.6 0.1 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Nudix_N_2 PF14803.6 gi|307595403|ref|YP_003901720.1| - 0.015 15.2 2.8 1.2 9.1 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal Ogr_Delta PF04606.12 gi|307595403|ref|YP_003901720.1| - 0.019 14.9 1.2 3.5 7.7 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DNA_ligase_ZBD PF03119.16 gi|307595403|ref|YP_003901720.1| - 0.022 14.8 3.5 3 8.0 0.2 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.12 gi|307595403|ref|YP_003901720.1| - 0.026 14.5 0.1 0.04 13.9 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons PCB_OB PF17092.5 gi|307595403|ref|YP_003901720.1| - 0.041 14.6 0.6 1.3 9.8 0.0 2.6 1 1 0 2 2 2 0 Penicillin-binding protein OB-like domain TF_Zn_Ribbon PF08271.12 gi|307595403|ref|YP_003901720.1| - 0.053 13.1 2.5 0.2 11.2 2.5 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.6 gi|307595403|ref|YP_003901720.1| - 0.064 13.3 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain HypA PF01155.19 gi|307595403|ref|YP_003901720.1| - 0.067 13.2 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3797 PF12677.7 gi|307595403|ref|YP_003901720.1| - 0.071 13.0 3.0 3.3 7.7 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) DiS_P_DiS PF06750.13 gi|307595403|ref|YP_003901720.1| - 0.083 13.0 0.0 0.75 10.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-ISL3 PF14690.6 gi|307595403|ref|YP_003901720.1| - 0.11 13.2 2.7 7.6 7.3 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 EXOSC1 PF10447.9 gi|307595403|ref|YP_003901720.1| - 0.12 13.0 7.1 1.1 9.9 0.6 3.0 2 2 0 3 3 3 0 Exosome component EXOSC1/CSL4 YacG PF03884.14 gi|307595403|ref|YP_003901720.1| - 0.2 11.4 1.4 4 7.3 0.1 2.2 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG zf-C4_Topoisom PF01396.19 gi|307595403|ref|YP_003901720.1| - 0.28 11.0 2.7 8 6.3 0.2 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-FPG_IleRS PF06827.14 gi|307595403|ref|YP_003901720.1| - 0.34 10.8 5.2 2 8.4 1.0 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_ribbon_recom PF13408.6 gi|307595403|ref|YP_003901720.1| - 0.38 11.3 2.8 8.1 7.0 0.3 2.3 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain HscB_4_cys PF18256.1 gi|307595403|ref|YP_003901720.1| - 0.42 10.5 4.7 0.74 9.7 4.7 1.4 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif Zn_Tnp_IS1595 PF12760.7 gi|307595403|ref|YP_003901720.1| - 1.2 9.1 6.3 3.8 7.6 0.3 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.11 gi|307595403|ref|YP_003901720.1| - 1.9 8.5 5.7 8.4 6.5 1.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin_2 PF18073.1 gi|307595403|ref|YP_003901720.1| - 2.3 8.0 4.4 20 5.0 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-TFIIB PF13453.6 gi|307595403|ref|YP_003901720.1| - 3 7.2 5.6 35 3.9 5.8 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger SurE PF01975.17 gi|307595404|ref|YP_003901721.1| - 5.1e-47 160.2 0.0 6.1e-47 159.9 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE tRNA-synt_1 PF00133.22 gi|307595406|ref|YP_003901723.1| - 2.1e-164 548.1 2.2 2.8e-164 547.7 2.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|307595406|ref|YP_003901723.1| - 5.4e-24 84.9 0.6 4.2e-23 82.0 0.1 2.7 3 0 0 3 3 3 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|307595406|ref|YP_003901723.1| - 8.3e-24 84.1 1.4 3.6e-07 29.3 0.7 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|307595406|ref|YP_003901723.1| - 1.4e-06 28.0 0.1 4.5e-06 26.3 0.1 1.8 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|307595406|ref|YP_003901723.1| - 0.00014 21.3 0.0 0.045 13.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|307595406|ref|YP_003901723.1| - 0.01 14.8 0.1 0.05 12.5 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) HscB_4_cys PF18256.1 gi|307595406|ref|YP_003901723.1| - 2 8.3 6.6 0.87 9.5 0.9 2.3 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif ASCH PF04266.14 gi|307595407|ref|YP_003901724.1| - 1.6e-07 31.9 0.0 2.8e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 ASCH domain Wzy_C PF04932.15 gi|307595408|ref|YP_003901725.1| - 0.0012 18.5 0.9 0.0016 18.1 0.9 1.1 1 0 0 1 1 1 1 O-Antigen ligase DUF4492 PF14899.6 gi|307595408|ref|YP_003901725.1| - 0.014 15.3 0.9 0.06 13.3 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4492) Baculo_11_kDa PF06143.11 gi|307595408|ref|YP_003901725.1| - 0.021 14.4 1.5 0.025 14.2 0.2 1.7 2 0 0 2 2 2 0 Baculovirus 11 kDa family Ac76 PF05814.11 gi|307595408|ref|YP_003901725.1| - 0.036 14.1 0.1 0.33 11.0 0.0 2.0 2 0 0 2 2 2 0 Orf76 (Ac76) ATP-synt_8 PF00895.20 gi|307595408|ref|YP_003901725.1| - 0.074 13.5 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 ATP synthase protein 8 DUF2207 PF09972.9 gi|307595408|ref|YP_003901725.1| - 0.17 10.6 1.2 0.2 10.4 1.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF1772 PF08592.11 gi|307595408|ref|YP_003901725.1| - 0.38 11.1 1.9 0.61 10.4 1.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) ATP-cone PF03477.16 gi|307595409|ref|YP_003901726.1| - 3.1e-06 27.7 1.4 3.6e-06 27.5 1.4 1.1 1 0 0 1 1 1 1 ATP cone domain SKI PF01202.22 gi|307595409|ref|YP_003901726.1| - 0.011 15.9 0.1 0.017 15.2 0.1 1.3 1 0 0 1 1 1 0 Shikimate kinase KNOX1 PF03790.13 gi|307595409|ref|YP_003901726.1| - 0.051 13.3 0.1 0.12 12.2 0.1 1.6 2 0 0 2 2 2 0 KNOX1 domain CLP1_P PF16575.5 gi|307595410|ref|YP_003901727.1| - 1.2e-31 109.9 0.1 1.8e-31 109.4 0.1 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|307595410|ref|YP_003901727.1| - 0.00046 20.2 0.3 0.0014 18.7 0.3 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|307595410|ref|YP_003901727.1| - 0.0088 15.9 0.1 0.02 14.8 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NusG_add PF18298.1 gi|307595410|ref|YP_003901727.1| - 0.0098 16.1 0.1 0.031 14.5 0.1 1.8 1 0 0 1 1 1 1 NusG additional domain AAA_31 PF13614.6 gi|307595410|ref|YP_003901727.1| - 0.011 15.7 0.5 0.026 14.4 0.5 1.7 1 1 0 1 1 1 0 AAA domain DUF1611 PF07755.11 gi|307595410|ref|YP_003901727.1| - 0.043 13.1 0.1 3.5 6.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain Sm_like PF16243.5 gi|307595410|ref|YP_003901727.1| - 0.055 13.6 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Sm_like domain ParA PF10609.9 gi|307595410|ref|YP_003901727.1| - 0.14 11.6 2.2 0.31 10.5 2.2 1.7 1 1 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase WbqC PF08889.11 gi|307595411|ref|YP_003901728.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 WbqC-like protein family AAA_5 PF07728.14 gi|307595412|ref|YP_003901729.1| - 9.3e-22 77.5 0.0 1.8e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|307595412|ref|YP_003901729.1| - 1.1e-20 73.8 0.0 1.9e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|307595412|ref|YP_003901729.1| - 3.8e-13 49.5 0.0 1.8e-12 47.3 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|307595412|ref|YP_003901729.1| - 7.7e-10 39.2 0.0 1.8e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|307595412|ref|YP_003901729.1| - 9.5e-10 38.2 0.3 8.2e-08 31.9 0.3 2.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|307595412|ref|YP_003901729.1| - 4e-09 37.0 0.0 1.2e-08 35.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_PrkA PF08298.11 gi|307595412|ref|YP_003901729.1| - 8.8e-08 31.4 0.0 0.0012 17.9 0.0 2.2 1 1 1 2 2 2 2 PrkA AAA domain MCM PF00493.23 gi|307595412|ref|YP_003901729.1| - 1.2e-07 31.0 0.0 2.1e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain AAA_16 PF13191.6 gi|307595412|ref|YP_003901729.1| - 6e-06 26.8 0.0 3.3e-05 24.3 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|307595412|ref|YP_003901729.1| - 1.5e-05 24.8 1.0 0.0037 17.0 0.2 2.4 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|307595412|ref|YP_003901729.1| - 1.8e-05 24.8 0.0 3.8e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|307595412|ref|YP_003901729.1| - 5.1e-05 23.1 0.0 8.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|307595412|ref|YP_003901729.1| - 6.8e-05 23.0 0.0 0.0002 21.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.6 gi|307595412|ref|YP_003901729.1| - 0.00023 21.3 0.0 0.00094 19.3 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_32 PF13654.6 gi|307595412|ref|YP_003901729.1| - 0.00047 19.1 0.1 0.026 13.3 0.0 2.5 2 1 1 3 3 3 1 AAA domain NTPase_1 PF03266.15 gi|307595412|ref|YP_003901729.1| - 0.0014 18.5 0.0 0.052 13.5 0.0 2.5 3 0 0 3 3 2 1 NTPase ATP-synt_ab PF00006.25 gi|307595412|ref|YP_003901729.1| - 0.002 17.8 0.2 0.014 15.1 0.2 2.0 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 gi|307595412|ref|YP_003901729.1| - 0.0029 17.1 0.0 0.0055 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region NACHT PF05729.12 gi|307595412|ref|YP_003901729.1| - 0.0033 17.4 0.0 0.0093 15.9 0.0 1.9 2 1 0 2 2 2 1 NACHT domain TsaE PF02367.17 gi|307595412|ref|YP_003901729.1| - 0.0035 17.4 0.0 0.0076 16.3 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|307595412|ref|YP_003901729.1| - 0.0055 16.4 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|307595412|ref|YP_003901729.1| - 0.0061 17.1 0.0 0.016 15.8 0.0 1.7 1 0 0 1 1 1 1 ABC transporter IstB_IS21 PF01695.17 gi|307595412|ref|YP_003901729.1| - 0.0062 16.3 0.1 0.17 11.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein DEAD PF00270.29 gi|307595412|ref|YP_003901729.1| - 0.0068 16.2 0.0 1.2 8.8 0.0 2.6 2 1 1 3 3 3 1 DEAD/DEAH box helicase RsgA_GTPase PF03193.16 gi|307595412|ref|YP_003901729.1| - 0.0074 16.2 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|307595412|ref|YP_003901729.1| - 0.019 15.5 0.0 0.042 14.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|307595412|ref|YP_003901729.1| - 0.054 13.8 0.3 0.93 9.8 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|307595412|ref|YP_003901729.1| - 0.063 13.4 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|307595412|ref|YP_003901729.1| - 0.065 13.5 0.1 0.15 12.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|307595412|ref|YP_003901729.1| - 0.078 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TIP49 PF06068.13 gi|307595412|ref|YP_003901729.1| - 0.078 12.2 0.0 0.17 11.1 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain FliL PF03748.14 gi|307595412|ref|YP_003901729.1| - 0.12 12.9 0.0 0.4 11.3 0.0 1.9 1 0 0 1 1 1 0 Flagellar basal body-associated protein FliL VWA PF00092.28 gi|307595413|ref|YP_003901730.1| - 2.8e-19 70.0 0.0 1.1e-18 68.1 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|307595413|ref|YP_003901730.1| - 5.9e-15 55.8 0.0 3.3e-14 53.4 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|307595413|ref|YP_003901730.1| - 5.3e-11 42.7 0.0 2.1e-10 40.7 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|307595413|ref|YP_003901730.1| - 2e-09 37.2 2.1 8.1e-09 35.2 1.2 2.3 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein DUF58 PF01882.18 gi|307595413|ref|YP_003901730.1| - 5.9e-06 26.5 0.0 2e-05 24.8 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function DUF58 Ku_N PF03731.15 gi|307595413|ref|YP_003901730.1| - 0.0081 15.9 1.2 0.33 10.7 0.1 3.1 3 0 0 3 3 3 1 Ku70/Ku80 N-terminal alpha/beta domain Radical_SAM PF04055.21 gi|307595413|ref|YP_003901730.1| - 0.018 15.4 0.1 1.4 9.2 0.0 2.6 2 0 0 2 2 2 0 Radical SAM superfamily DNA_primase_lrg PF04104.14 gi|307595414|ref|YP_003901731.1| - 4.2e-28 98.5 0.0 5.9e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit FPL PF09758.9 gi|307595414|ref|YP_003901731.1| - 0.013 15.5 0.0 0.082 12.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised conserved protein Vps36-NZF-N PF16988.5 gi|307595414|ref|YP_003901731.1| - 0.098 12.1 0.1 0.22 10.9 0.1 1.6 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain DUF2204 PF09970.9 gi|307595416|ref|YP_003901733.1| - 1.7e-52 177.7 6.8 1.9e-52 177.5 6.8 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.6 gi|307595416|ref|YP_003901733.1| - 0.031 13.9 0.1 0.04 13.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised nucleotidyltransferase Ribosomal_L6 PF00347.23 gi|307595417|ref|YP_003901734.1| - 3e-20 72.7 4.9 1.4e-09 38.4 0.9 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF4245 PF14030.6 gi|307595418|ref|YP_003901735.1| - 0.06 13.4 0.0 0.098 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4245) Invasin_D3 PF09134.10 gi|307595418|ref|YP_003901735.1| - 0.35 11.2 10.6 0.28 11.5 8.1 2.0 2 1 0 2 2 2 0 Invasin, domain 3 Big_1 PF02369.16 gi|307595418|ref|YP_003901735.1| - 2.9 7.9 15.3 2.8 8.0 11.1 3.0 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 1) DUF2341 PF10102.9 gi|307595420|ref|YP_003901737.1| - 0.04 14.5 1.7 0.064 13.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2341) SMP_2 PF10144.9 gi|307595421|ref|YP_003901738.1| - 0.066 12.9 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 Bacterial virulence factor haemolysin Flp1_like PF16982.5 gi|307595421|ref|YP_003901738.1| - 0.59 9.6 5.0 0.48 9.9 3.0 1.8 2 0 0 2 2 2 0 Putative Flagellin, Flp1-like, domain PMT_4TMC PF16192.5 gi|307595422|ref|YP_003901739.1| - 0.084 12.5 2.6 0.13 11.9 0.2 2.1 2 0 0 2 2 2 0 C-terminal four TMM region of protein-O-mannosyltransferase Flp1_like PF16982.5 gi|307595423|ref|YP_003901740.1| - 0.12 11.8 0.6 2.3 7.7 0.2 2.4 2 0 0 2 2 2 0 Putative Flagellin, Flp1-like, domain Polbeta PF18765.1 gi|307595424|ref|YP_003901741.1| - 2.1e-08 34.1 0.0 3.6e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|307595425|ref|YP_003901742.1| - 1.9e-15 56.8 0.3 2.1e-15 56.6 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF87 PF01935.17 gi|307595426|ref|YP_003901743.1| - 1.2e-19 71.3 0.1 2.1e-19 70.6 0.1 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|307595426|ref|YP_003901743.1| - 9.5e-08 31.3 0.1 4.8e-07 29.0 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|307595426|ref|YP_003901743.1| - 4e-05 23.9 0.0 0.018 15.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|307595426|ref|YP_003901743.1| - 0.00017 20.6 0.1 0.00034 19.7 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB FtsK_SpoIIIE PF01580.18 gi|307595426|ref|YP_003901743.1| - 0.00047 19.6 0.2 0.045 13.1 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|307595426|ref|YP_003901743.1| - 0.0015 18.9 0.1 0.011 16.2 0.1 2.2 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|307595426|ref|YP_003901743.1| - 0.0021 18.1 0.0 0.007 16.4 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|307595426|ref|YP_003901743.1| - 0.0043 17.0 0.6 0.019 14.9 0.0 2.0 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_10 PF12846.7 gi|307595426|ref|YP_003901743.1| - 0.0066 15.4 0.0 1.2 8.0 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain DUF815 PF05673.13 gi|307595426|ref|YP_003901743.1| - 0.0071 15.5 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DUF853 PF05872.12 gi|307595426|ref|YP_003901743.1| - 0.0084 14.7 0.1 0.02 13.5 0.0 1.5 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.27 gi|307595426|ref|YP_003901743.1| - 0.0086 16.6 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter IstB_IS21 PF01695.17 gi|307595426|ref|YP_003901743.1| - 0.056 13.2 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|307595426|ref|YP_003901743.1| - 0.058 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_19 PF13245.6 gi|307595426|ref|YP_003901743.1| - 0.097 13.0 0.1 1.2 9.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|307595426|ref|YP_003901743.1| - 0.1 13.0 0.0 0.21 12.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|307595426|ref|YP_003901743.1| - 0.18 12.4 0.0 0.49 10.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AA_permease_2 PF13520.6 gi|307595427|ref|YP_003901744.1| - 5.6e-43 147.3 49.1 5.6e-43 147.3 49.1 2.1 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|307595427|ref|YP_003901744.1| - 1.6e-28 99.6 58.5 1.6e-28 99.6 58.5 2.9 1 1 2 3 3 3 1 Amino acid permease OMPdecase PF00215.24 gi|307595428|ref|YP_003901745.1| - 1.1e-18 67.7 0.0 1.4e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family ComA PF02679.15 gi|307595428|ref|YP_003901745.1| - 0.0074 15.8 0.0 0.11 11.9 0.0 2.0 2 0 0 2 2 2 1 (2R)-phospho-3-sulfolactate synthase (ComA) Fibrillarin_2 PF10113.9 gi|307595428|ref|YP_003901745.1| - 0.11 11.1 0.1 0.14 10.8 0.1 1.1 1 0 0 1 1 1 0 Fibrillarin-like archaeal protein AsnC_trans_reg PF01037.21 gi|307595429|ref|YP_003901746.1| - 9.2e-17 60.8 0.0 1.5e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|307595429|ref|YP_003901746.1| - 8.1e-11 41.3 1.6 1.3e-10 40.7 1.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|307595429|ref|YP_003901746.1| - 7.6e-10 38.5 2.7 1.3e-09 37.7 2.7 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|307595429|ref|YP_003901746.1| - 0.00041 20.2 0.2 0.00082 19.3 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|307595429|ref|YP_003901746.1| - 0.0038 17.1 0.3 0.0071 16.3 0.3 1.4 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|307595429|ref|YP_003901746.1| - 0.012 15.3 0.5 0.019 14.6 0.5 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|307595429|ref|YP_003901746.1| - 0.053 13.6 0.2 0.12 12.5 0.2 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain E3_UFM1_ligase PF09743.9 gi|307595429|ref|YP_003901746.1| - 0.066 12.8 0.1 0.083 12.5 0.1 1.1 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 TrmB PF01978.19 gi|307595429|ref|YP_003901746.1| - 0.07 13.0 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|307595429|ref|YP_003901746.1| - 0.073 13.4 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Fer4 PF00037.27 gi|307595430|ref|YP_003901747.1| - 5.7e-11 41.8 19.3 8.2e-10 38.1 4.7 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|307595430|ref|YP_003901747.1| - 2.4e-10 40.0 15.7 4.6e-10 39.1 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307595430|ref|YP_003901747.1| - 2.7e-09 37.0 8.7 3.5e-09 36.6 8.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307595430|ref|YP_003901747.1| - 4e-09 37.3 4.9 2.5e-05 25.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|307595430|ref|YP_003901747.1| - 4.1e-09 36.9 7.7 2.1e-08 34.6 7.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307595430|ref|YP_003901747.1| - 5.1e-08 32.5 11.0 7.4e-08 32.0 3.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307595430|ref|YP_003901747.1| - 7e-08 32.5 6.3 7e-08 32.5 6.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307595430|ref|YP_003901747.1| - 4.7e-07 30.5 1.0 4.7e-07 30.5 1.0 2.5 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_9 PF13187.6 gi|307595430|ref|YP_003901747.1| - 9e-07 29.0 6.6 1.7e-06 28.0 6.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307595430|ref|YP_003901747.1| - 5.3e-05 23.4 13.0 9.3e-05 22.7 3.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307595430|ref|YP_003901747.1| - 7.3e-05 23.4 17.4 0.00084 20.1 6.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|307595430|ref|YP_003901747.1| - 0.00056 20.4 8.1 0.006 17.1 1.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307595430|ref|YP_003901747.1| - 0.0011 19.3 9.7 0.15 12.6 8.9 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|307595430|ref|YP_003901747.1| - 0.0027 18.5 3.5 0.011 16.5 0.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|307595430|ref|YP_003901747.1| - 0.0064 16.6 3.0 0.013 15.6 3.0 1.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307595430|ref|YP_003901747.1| - 0.026 15.1 13.5 0.55 10.8 12.5 2.5 2 1 0 2 2 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|307595430|ref|YP_003901747.1| - 4 7.7 12.6 0.48 10.6 3.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain TatD_DNase PF01026.21 gi|307595431|ref|YP_003901748.1| - 1.5e-50 171.9 0.0 1.8e-50 171.7 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Ribosomal_S17 PF00366.20 gi|307595432|ref|YP_003901749.1| - 1.8e-18 66.4 1.1 2.9e-18 65.7 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S17 Peptidase_M11 PF05548.11 gi|307595432|ref|YP_003901749.1| - 0.028 13.6 0.1 0.037 13.2 0.1 1.1 1 0 0 1 1 1 0 Gametolysin peptidase M11 HAS-barrel PF09378.10 gi|307595432|ref|YP_003901749.1| - 0.028 14.5 1.3 0.14 12.4 0.1 2.2 2 1 0 2 2 2 0 HAS barrel domain zf-C3H1 PF10650.9 gi|307595432|ref|YP_003901749.1| - 0.049 13.4 1.0 0.096 12.4 1.0 1.4 1 0 0 1 1 1 0 Putative zinc-finger domain CxC5 PF18718.1 gi|307595432|ref|YP_003901749.1| - 0.15 12.2 0.1 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases PALP PF00291.25 gi|307595434|ref|YP_003901751.1| - 7.8e-49 166.7 0.0 2e-48 165.3 0.0 1.5 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Ceramidse_alk_C PF17048.5 gi|307595435|ref|YP_003901752.1| - 0.0086 16.0 0.4 0.0097 15.8 0.4 1.1 1 0 0 1 1 1 1 Neutral/alkaline non-lysosomal ceramidase, C-terminal Aminotran_3 PF00202.21 gi|307595436|ref|YP_003901753.1| - 8.4e-121 403.4 0.0 1e-120 403.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Cyt_bd_oxida_I PF01654.17 gi|307595439|ref|YP_003901756.1| - 4e-17 62.0 19.7 4e-17 62.0 19.7 2.6 2 1 1 3 3 3 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_I PF01654.17 gi|307595440|ref|YP_003901757.1| - 2.2e-62 211.0 42.3 2.6e-61 207.5 42.3 2.0 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Pyr_redox_2 PF07992.14 gi|307595441|ref|YP_003901758.1| - 8.7e-55 186.0 0.2 1.3e-54 185.5 0.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307595441|ref|YP_003901758.1| - 2.2e-22 79.4 3.1 6.8e-17 61.8 0.4 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|307595441|ref|YP_003901758.1| - 5.7e-18 65.2 0.1 8.7e-14 51.5 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|307595441|ref|YP_003901758.1| - 1.5e-15 57.4 0.0 3.2e-15 56.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.14 gi|307595441|ref|YP_003901758.1| - 5.5e-11 41.8 3.6 0.00058 18.7 0.1 4.0 3 1 1 4 4 4 2 HI0933-like protein DAO PF01266.24 gi|307595441|ref|YP_003901758.1| - 1.5e-09 38.0 11.2 0.00023 20.9 0.2 3.8 1 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|307595441|ref|YP_003901758.1| - 1.4e-08 34.9 6.0 0.017 15.1 0.1 3.7 4 0 0 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|307595441|ref|YP_003901758.1| - 6.4e-08 32.7 0.4 2.5e-05 24.4 0.1 2.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|307595441|ref|YP_003901758.1| - 5.1e-06 25.8 0.5 0.0004 19.6 0.0 3.0 3 1 1 4 4 4 1 FAD binding domain Amino_oxidase PF01593.24 gi|307595441|ref|YP_003901758.1| - 4.2e-05 23.0 0.3 0.0015 17.9 0.0 2.9 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|307595441|ref|YP_003901758.1| - 4.8e-05 22.6 0.8 0.0094 15.0 0.1 2.7 2 1 1 3 3 3 1 Lycopene cyclase protein GIDA PF01134.22 gi|307595441|ref|YP_003901758.1| - 4.9e-05 22.6 4.2 0.04 13.0 0.1 3.8 3 1 1 4 4 4 1 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|307595441|ref|YP_003901758.1| - 8.5e-05 21.8 0.1 0.018 14.2 0.0 2.8 2 1 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.19 gi|307595441|ref|YP_003901758.1| - 0.00067 19.1 0.2 0.018 14.4 0.0 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|307595441|ref|YP_003901758.1| - 0.0019 17.5 0.3 0.0046 16.2 0.0 1.8 2 0 0 2 2 2 1 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|307595441|ref|YP_003901758.1| - 0.0069 16.0 0.1 0.026 14.1 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Rib_5-P_isom_A PF06026.14 gi|307595441|ref|YP_003901758.1| - 0.01 15.5 0.1 0.029 14.0 0.0 1.7 2 0 0 2 2 2 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 3HCDH_N PF02737.18 gi|307595441|ref|YP_003901758.1| - 0.012 15.5 1.7 0.028 14.3 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|307595441|ref|YP_003901758.1| - 0.017 14.4 0.5 0.051 12.9 0.2 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|307595441|ref|YP_003901758.1| - 0.021 15.0 0.3 5.1 7.4 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain Trp_halogenase PF04820.14 gi|307595441|ref|YP_003901758.1| - 0.024 13.5 0.2 0.049 12.5 0.0 1.6 2 0 0 2 2 2 0 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|307595441|ref|YP_003901758.1| - 0.029 13.6 0.7 1.1 8.5 0.1 2.3 2 0 0 2 2 2 0 FAD binding domain F420_oxidored PF03807.17 gi|307595441|ref|YP_003901758.1| - 0.09 13.4 4.5 3.4 8.3 1.5 3.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|307595441|ref|YP_003901758.1| - 0.097 13.5 0.2 15 6.5 0.0 2.7 3 0 0 3 3 2 0 Oxidoreductase family, NAD-binding Rossmann fold FAD_oxidored PF12831.7 gi|307595441|ref|YP_003901758.1| - 0.1 11.9 0.4 0.46 9.8 0.4 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase ATP-synt_ab PF00006.25 gi|307595441|ref|YP_003901758.1| - 0.16 11.6 0.0 0.32 10.6 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Rubrerythrin PF02915.17 gi|307595442|ref|YP_003901759.1| - 0.0022 18.4 0.6 1 9.7 0.2 2.9 2 1 0 2 2 2 1 Rubrerythrin AA_permease_2 PF13520.6 gi|307595443|ref|YP_003901760.1| - 1e-09 37.8 68.3 1.7e-09 37.0 68.3 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|307595443|ref|YP_003901760.1| - 1.8e-05 23.5 61.7 2.8e-05 22.9 61.7 1.2 1 0 0 1 1 1 1 Amino acid permease DELLA PF12041.8 gi|307595444|ref|YP_003901761.1| - 0.098 12.6 0.1 0.2 11.6 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator DELLA protein N terminal Nre_N PF04894.12 gi|307595445|ref|YP_003901762.1| - 2.4e-106 355.5 0.0 3e-106 355.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|307595445|ref|YP_003901762.1| - 4.9e-38 129.4 0.0 7.6e-38 128.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Radical_SAM PF04055.21 gi|307595446|ref|YP_003901763.1| - 2e-08 34.8 0.0 3.1e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|307595446|ref|YP_003901763.1| - 0.16 11.6 8.0 1.6 8.4 3.8 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF1848) B12-binding PF02310.19 gi|307595446|ref|YP_003901763.1| - 0.19 11.8 0.0 0.94 9.5 0.0 2.1 2 1 0 2 2 2 0 B12 binding domain SIMPL PF04402.14 gi|307595447|ref|YP_003901764.1| - 0.089 13.2 0.0 0.089 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) dsrm PF00035.26 gi|307595447|ref|YP_003901764.1| - 0.12 13.1 0.2 0.2 12.4 0.2 1.4 1 0 0 1 1 1 0 Double-stranded RNA binding motif PIN PF01850.21 gi|307595448|ref|YP_003901765.1| - 1.5e-11 44.8 0.4 1.8e-11 44.6 0.4 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|307595448|ref|YP_003901765.1| - 0.0046 17.7 0.1 0.0052 17.5 0.1 1.2 1 0 0 1 1 1 1 PIN domain Spheroidin PF05541.12 gi|307595448|ref|YP_003901765.1| - 0.13 10.0 0.0 0.17 9.7 0.0 1.1 1 0 0 1 1 1 0 Entomopoxvirus spheroidin protein MoCF_biosynth PF00994.24 gi|307595450|ref|YP_003901767.1| - 1.5e-33 115.5 0.0 2.2e-33 114.9 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain Resolvase PF00239.21 gi|307595452|ref|YP_003901769.1| - 2.8e-31 108.6 0.1 3.6e-31 108.2 0.1 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.6 gi|307595452|ref|YP_003901769.1| - 3.3e-05 23.5 0.2 3.3e-05 23.5 0.2 1.9 2 0 0 2 2 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|307595452|ref|YP_003901769.1| - 0.0002 20.8 6.1 0.0085 15.6 0.4 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 Complex1_LYR PF05347.15 gi|307595452|ref|YP_003901769.1| - 0.0025 17.8 1.6 0.0044 17.0 0.3 2.1 2 0 0 2 2 2 1 Complex 1 protein (LYR family) Sigma70_r4_2 PF08281.12 gi|307595452|ref|YP_003901769.1| - 0.0048 16.5 0.3 0.011 15.4 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Zn_Tnp_IS1595 PF12760.7 gi|307595452|ref|YP_003901769.1| - 0.013 15.4 0.6 5.4 7.1 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain GerE PF00196.19 gi|307595452|ref|YP_003901769.1| - 0.016 14.7 0.1 0.049 13.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|307595452|ref|YP_003901769.1| - 0.022 14.5 1.0 0.035 13.9 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|307595452|ref|YP_003901769.1| - 0.022 14.3 1.2 0.099 12.2 0.1 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GCP_N_terminal PF17681.1 gi|307595452|ref|YP_003901769.1| - 0.027 14.1 0.0 0.033 13.8 0.0 1.1 1 0 0 1 1 1 0 Gamma tubulin complex component N-terminal zf-TFIIB PF13453.6 gi|307595452|ref|YP_003901769.1| - 0.051 12.9 0.8 0.92 8.9 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger HTH_29 PF13551.6 gi|307595452|ref|YP_003901769.1| - 0.067 13.2 0.1 0.25 11.4 0.1 2.0 1 0 0 1 1 1 0 Winged helix-turn helix Lar_restr_allev PF14354.6 gi|307595452|ref|YP_003901769.1| - 0.098 13.0 0.4 0.17 12.2 0.4 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|307595452|ref|YP_003901769.1| - 0.12 11.9 0.8 7.8 6.1 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-HIT PF04438.16 gi|307595452|ref|YP_003901769.1| - 0.29 11.0 4.2 0.31 10.9 0.7 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.6 gi|307595452|ref|YP_003901769.1| - 4.2 6.9 5.7 1.6 8.2 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain 2-Hacid_dh_C PF02826.19 gi|307595453|ref|YP_003901770.1| - 5.9e-59 198.4 0.0 8.5e-59 197.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|307595453|ref|YP_003901770.1| - 1.5e-35 121.7 0.1 1.7e-35 121.6 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|307595453|ref|YP_003901770.1| - 4.7e-05 23.6 0.3 9.2e-05 22.7 0.3 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|307595453|ref|YP_003901770.1| - 0.0022 18.1 0.2 0.0044 17.1 0.2 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ish1 PF10281.9 gi|307595453|ref|YP_003901770.1| - 0.03 14.6 0.0 0.065 13.5 0.0 1.6 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein Gp_dh_N PF00044.24 gi|307595453|ref|YP_003901770.1| - 0.073 13.4 0.1 0.14 12.5 0.1 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Hom_end PF05204.14 gi|307595454|ref|YP_003901771.1| - 0.0052 16.9 0.0 0.0062 16.7 0.0 1.2 1 0 0 1 1 1 1 Homing endonuclease DnaB_bind PF10410.9 gi|307595454|ref|YP_003901771.1| - 0.11 12.7 0.1 0.34 11.1 0.0 1.8 2 0 0 2 2 2 0 DnaB-helicase binding domain of primase DrsE PF02635.15 gi|307595455|ref|YP_003901772.1| - 1e-13 51.6 0.1 1.2e-13 51.4 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|307595455|ref|YP_003901772.1| - 4.6e-05 23.5 0.2 5.9e-05 23.1 0.2 1.1 1 0 0 1 1 1 1 DsrH like protein DrsE_2 PF13686.6 gi|307595455|ref|YP_003901772.1| - 0.0066 16.4 0.0 0.012 15.5 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family SBP_bac_11 PF13531.6 gi|307595456|ref|YP_003901773.1| - 8.5e-07 28.9 0.0 1.2e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF5615 PF18480.1 gi|307595457|ref|YP_003901774.1| - 0.028 14.2 0.3 6.3 6.6 0.1 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF5615) CcdA PF07362.12 gi|307595458|ref|YP_003901775.1| - 0.00011 22.6 0.9 0.00016 22.1 0.7 1.4 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA DnaB_bind PF10410.9 gi|307595458|ref|YP_003901775.1| - 0.0086 16.2 1.5 0.013 15.7 1.1 1.6 2 0 0 2 2 2 1 DnaB-helicase binding domain of primase RHH_1 PF01402.21 gi|307595458|ref|YP_003901775.1| - 0.025 14.5 0.3 0.025 14.5 0.3 2.6 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family RE_HindIII PF09518.10 gi|307595458|ref|YP_003901775.1| - 0.06 12.6 0.1 0.062 12.5 0.1 1.1 1 0 0 1 1 1 0 HindIII restriction endonuclease RHH_3 PF12651.7 gi|307595458|ref|YP_003901775.1| - 0.16 12.0 2.2 0.21 11.6 0.3 2.2 2 1 0 2 2 2 0 Ribbon-helix-helix domain UIM PF02809.20 gi|307595458|ref|YP_003901775.1| - 1.2 9.2 7.7 5.7 7.1 2.0 3.2 3 0 0 3 3 3 0 Ubiquitin interaction motif AP_endonuc_2 PF01261.24 gi|307595459|ref|YP_003901776.1| - 3.5e-26 92.0 0.2 7e-26 91.0 0.1 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|307595459|ref|YP_003901776.1| - 0.00036 19.9 0.0 0.00065 19.0 0.0 1.4 1 0 0 1 1 1 1 UV-endonuclease UvdE DUF4121 PF13497.6 gi|307595459|ref|YP_003901776.1| - 0.0058 15.8 0.2 0.0099 15.1 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4121) DegS PF05384.11 gi|307595459|ref|YP_003901776.1| - 0.042 13.3 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 Sensor protein DegS Macro_2 PF14519.6 gi|307595459|ref|YP_003901776.1| - 0.081 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Macro-like domain NTP_transf_2 PF01909.23 gi|307595460|ref|YP_003901777.1| - 9.3e-10 38.7 0.1 1e-09 38.5 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|307595460|ref|YP_003901777.1| - 2.6e-05 24.2 0.0 4.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|307595460|ref|YP_003901777.1| - 0.13 12.1 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|307595461|ref|YP_003901778.1| - 4.6e-30 104.2 0.0 5.3e-30 104.0 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|307595461|ref|YP_003901778.1| - 0.071 13.0 0.0 0.099 12.6 0.0 1.6 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family Radical_SAM PF04055.21 gi|307595462|ref|YP_003901779.1| - 6e-25 88.5 0.0 5.6e-24 85.4 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily DZR PF12773.7 gi|307595462|ref|YP_003901779.1| - 0.0033 17.4 0.1 0.0033 17.4 0.1 2.4 3 0 0 3 3 2 1 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|307595462|ref|YP_003901779.1| - 0.015 15.1 0.4 4.1 7.3 0.0 2.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.11 gi|307595462|ref|YP_003901779.1| - 0.016 14.8 1.9 0.31 10.7 0.1 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Fer4_12 PF13353.6 gi|307595462|ref|YP_003901779.1| - 0.025 14.8 0.0 0.07 13.4 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|307595462|ref|YP_003901779.1| - 0.061 12.8 8.3 0.11 11.9 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|307595462|ref|YP_003901779.1| - 0.14 11.7 3.1 6.8 6.3 0.1 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding tRNA-synt_1f PF01921.18 gi|307595462|ref|YP_003901779.1| - 0.14 11.0 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (K) zinc_ribbon_2 PF13240.6 gi|307595462|ref|YP_003901779.1| - 0.26 11.1 11.3 0.79 9.5 0.3 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|307595462|ref|YP_003901779.1| - 0.41 10.8 2.9 6.1 7.0 2.9 2.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.11 gi|307595462|ref|YP_003901779.1| - 1.2 9.1 4.5 0.31 11.0 0.3 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|307595462|ref|YP_003901779.1| - 2.5 7.8 6.9 3.3 7.4 0.2 2.9 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Mu-like_Com PF10122.9 gi|307595462|ref|YP_003901779.1| - 2.5 7.6 8.4 2.7 7.5 0.1 3.1 3 0 0 3 3 3 0 Mu-like prophage protein Com zinc_ribbon_4 PF13717.6 gi|307595462|ref|YP_003901779.1| - 4.3 7.3 8.7 2.2 8.3 2.1 3.2 3 1 0 3 3 3 0 zinc-ribbon domain CpXC PF14353.6 gi|307595462|ref|YP_003901779.1| - 6.4 6.8 7.3 0.91 9.6 0.7 2.5 2 1 1 3 3 2 0 CpXC protein Agarase_CBM PF17992.1 gi|307595463|ref|YP_003901780.1| - 0.096 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Agarase CBM like domain Chordopox_A13L PF05961.11 gi|307595463|ref|YP_003901780.1| - 0.11 12.8 0.3 0.19 12.0 0.3 1.4 1 0 0 1 1 1 0 Chordopoxvirus A13L protein TcdB_N PF12918.7 gi|307595464|ref|YP_003901781.1| - 0.13 12.6 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain Glyco_trans_4_3 PF12000.8 gi|307595465|ref|YP_003901782.1| - 0.14 11.9 0.1 0.2 11.3 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 4 group DDRGK PF09756.9 gi|307595465|ref|YP_003901782.1| - 0.2 11.2 5.7 2.1 7.9 0.1 2.7 1 1 1 2 2 2 0 DDRGK domain DUF4870 PF09685.10 gi|307595466|ref|YP_003901783.1| - 2.3e-05 24.4 10.1 3.1e-05 24.0 10.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) Abhydrolase_9_N PF15420.6 gi|307595466|ref|YP_003901783.1| - 0.61 10.0 7.9 0.9 9.5 0.2 2.2 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus Tenui_PVC2 PF06656.11 gi|307595466|ref|YP_003901783.1| - 0.87 7.4 3.7 0.85 7.4 3.7 1.0 1 0 0 1 1 1 0 Tenuivirus PVC2 protein T_cell_tran_alt PF15128.6 gi|307595466|ref|YP_003901783.1| - 1.7 8.5 4.2 1.1 9.1 2.7 1.6 1 1 0 1 1 1 0 T-cell leukemia translocation-altered RNA_pol_L_2 PF13656.6 gi|307595467|ref|YP_003901784.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Thermopsin PF05317.11 gi|307595469|ref|YP_003901786.1| - 1.3e-70 237.9 8.7 1.3e-70 237.9 8.7 2.8 2 1 0 2 2 2 1 Thermopsin DUF1883 PF08980.10 gi|307595469|ref|YP_003901786.1| - 0.015 15.2 0.0 0.064 13.2 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1883) GATase_6 PF13522.6 gi|307595470|ref|YP_003901787.1| - 2.7e-05 24.4 0.0 4.4e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|307595470|ref|YP_003901787.1| - 0.025 13.5 0.1 0.039 12.9 0.1 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II AAA_31 PF13614.6 gi|307595471|ref|YP_003901788.1| - 6.3e-16 58.8 0.0 9.3e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|307595471|ref|YP_003901788.1| - 3.1e-14 53.1 0.0 5.1e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|307595471|ref|YP_003901788.1| - 5e-07 29.5 0.1 1.1e-06 28.3 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.9 gi|307595471|ref|YP_003901788.1| - 1.1e-05 25.1 1.0 0.0001 21.8 1.0 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|307595471|ref|YP_003901788.1| - 2.5e-05 23.6 1.2 0.00022 20.5 0.1 2.9 3 1 0 3 3 3 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|307595471|ref|YP_003901788.1| - 6.7e-05 22.7 0.1 0.00029 20.6 0.1 2.0 2 1 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|307595471|ref|YP_003901788.1| - 0.00018 21.1 0.1 0.0021 17.6 0.1 2.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|307595471|ref|YP_003901788.1| - 0.00034 20.0 0.0 0.007 15.7 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.6 gi|307595471|ref|YP_003901788.1| - 0.00061 19.4 0.7 0.0022 17.6 0.7 1.9 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|307595471|ref|YP_003901788.1| - 0.0029 17.7 0.2 0.24 11.4 0.0 3.3 1 1 1 2 2 2 1 AAA domain VirC1 PF07015.11 gi|307595471|ref|YP_003901788.1| - 0.0067 15.8 0.2 0.012 14.9 0.2 1.4 1 0 0 1 1 1 1 VirC1 protein CLP1_P PF16575.5 gi|307595471|ref|YP_003901788.1| - 0.09 12.6 0.1 0.37 10.6 0.0 2.0 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ATP_bind_1 PF03029.17 gi|307595471|ref|YP_003901788.1| - 0.12 12.1 0.4 1.1 9.0 0.4 2.3 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein PhoH PF02562.16 gi|307595471|ref|YP_003901788.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DnaB_C PF03796.15 gi|307595471|ref|YP_003901788.1| - 0.14 11.5 0.1 0.34 10.2 0.0 1.6 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain MeaB PF03308.16 gi|307595471|ref|YP_003901788.1| - 0.16 10.9 0.0 0.32 10.0 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|307595471|ref|YP_003901788.1| - 0.19 11.0 0.0 0.38 10.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Abhydrolase_1 PF00561.20 gi|307595473|ref|YP_003901790.1| - 3.9e-31 108.6 0.0 9.1e-30 104.1 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|307595473|ref|YP_003901790.1| - 1.6e-24 86.5 0.0 2e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|307595473|ref|YP_003901790.1| - 2.5e-20 74.1 0.1 2.9e-20 73.8 0.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.14 gi|307595473|ref|YP_003901790.1| - 1.1e-06 27.5 0.0 1.3e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Ndr family DLH PF01738.18 gi|307595473|ref|YP_003901790.1| - 0.00062 19.4 0.0 0.042 13.4 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family PGAP1 PF07819.13 gi|307595473|ref|YP_003901790.1| - 0.0014 18.4 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 PGAP1-like protein Peptidase_S9 PF00326.21 gi|307595473|ref|YP_003901790.1| - 0.0018 17.8 0.0 0.013 15.0 0.0 2.1 2 0 0 2 2 2 1 Prolyl oligopeptidase family FSH1 PF03959.13 gi|307595473|ref|YP_003901790.1| - 0.0038 16.9 0.0 0.069 12.8 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Thioesterase PF00975.20 gi|307595473|ref|YP_003901790.1| - 0.01 16.0 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.10 gi|307595473|ref|YP_003901790.1| - 0.019 15.1 0.0 0.03 14.4 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_5 PF12695.7 gi|307595473|ref|YP_003901790.1| - 0.027 14.2 0.0 0.059 13.1 0.0 1.6 2 0 0 2 2 2 0 Alpha/beta hydrolase family Palm_thioest PF02089.15 gi|307595473|ref|YP_003901790.1| - 0.038 13.8 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Abhydrolase_2 PF02230.16 gi|307595473|ref|YP_003901790.1| - 0.052 13.4 0.0 4.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase LIDHydrolase PF10230.9 gi|307595473|ref|YP_003901790.1| - 0.064 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Lipid-droplet associated hydrolase Nucleo_P87 PF07267.11 gi|307595473|ref|YP_003901790.1| - 0.1 11.4 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 Esterase PF00756.20 gi|307595473|ref|YP_003901790.1| - 0.19 11.3 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Radical_SAM PF04055.21 gi|307595474|ref|YP_003901791.1| - 1.3e-19 71.1 0.0 7.7e-19 68.7 0.0 2.1 2 1 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|307595474|ref|YP_003901791.1| - 1.4e-19 70.2 0.0 3.1e-19 69.1 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation DUF3883 PF13020.6 gi|307595474|ref|YP_003901791.1| - 0.049 13.7 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) ILEI PF15711.5 gi|307595474|ref|YP_003901791.1| - 0.14 12.7 0.0 0.35 11.4 0.0 1.6 1 0 0 1 1 1 0 Interleukin-like EMT inducer TrmO PF01980.16 gi|307595475|ref|YP_003901792.1| - 1.4e-29 102.8 0.0 2.2e-29 102.1 0.0 1.2 1 0 0 1 1 1 1 tRNA-methyltransferase O Methyltransf_23 PF13489.6 gi|307595476|ref|YP_003901793.1| - 4.7e-13 49.3 0.0 5.9e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|307595476|ref|YP_003901793.1| - 7.1e-13 49.0 0.0 1.1e-12 48.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307595476|ref|YP_003901793.1| - 1.4e-11 44.9 0.0 2.2e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|307595476|ref|YP_003901793.1| - 1.5e-09 38.5 0.0 2.7e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307595476|ref|YP_003901793.1| - 4e-06 26.7 0.0 7e-06 25.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|307595476|ref|YP_003901793.1| - 0.0005 19.5 0.0 0.00069 19.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|307595476|ref|YP_003901793.1| - 0.24 11.1 0.0 0.35 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HEPN PF05168.14 gi|307595477|ref|YP_003901794.1| - 2.1e-19 69.8 0.2 7.4e-19 68.0 0.2 1.7 1 1 0 1 1 1 1 HEPN domain TPR_2 PF07719.17 gi|307595477|ref|YP_003901794.1| - 0.12 12.5 0.2 10 6.5 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|307595478|ref|YP_003901795.1| - 3.5e-07 30.4 0.1 4.5e-07 30.1 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|307595478|ref|YP_003901795.1| - 0.011 15.8 0.0 0.014 15.5 0.0 1.2 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase DUF1129 PF06570.11 gi|307595479|ref|YP_003901796.1| - 0.085 12.3 0.1 0.093 12.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Form-deh_trans PF09163.11 gi|307595479|ref|YP_003901796.1| - 0.27 11.0 3.9 1.8 8.4 0.5 2.2 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane Thioredox_DsbH PF03190.15 gi|307595480|ref|YP_003901797.1| - 5e-59 198.9 0.0 8.5e-59 198.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|307595480|ref|YP_003901797.1| - 2.2e-11 43.8 0.0 3.7e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|307595480|ref|YP_003901797.1| - 0.003 17.5 0.1 0.0059 16.6 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin Sigma70_r4 PF04545.16 gi|307595480|ref|YP_003901797.1| - 0.0044 16.5 0.0 0.0092 15.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Clathrin-link PF09268.10 gi|307595480|ref|YP_003901797.1| - 0.03 13.7 2.6 0.065 12.6 0.5 2.8 3 0 0 3 3 3 0 Clathrin, heavy-chain linker HTH_17 PF12728.7 gi|307595480|ref|YP_003901797.1| - 0.031 14.5 0.0 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain C5-epim_C PF06662.13 gi|307595480|ref|YP_003901797.1| - 0.032 13.7 1.2 0.36 10.3 0.0 3.0 4 1 0 4 4 4 0 D-glucuronyl C5-epimerase C-terminus HTH_10 PF04967.12 gi|307595480|ref|YP_003901797.1| - 0.037 13.8 0.2 0.11 12.4 0.2 1.8 1 0 0 1 1 1 0 HTH DNA binding domain Thioredoxin_2 PF13098.6 gi|307595480|ref|YP_003901797.1| - 0.1 13.1 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like domain Glyco_hydro_76 PF03663.14 gi|307595480|ref|YP_003901797.1| - 0.13 11.7 0.0 0.29 10.6 0.0 1.5 1 1 0 1 1 1 0 Glycosyl hydrolase family 76 Rhodanese PF00581.20 gi|307595481|ref|YP_003901798.1| - 6.9e-30 103.7 0.0 4.4e-17 62.6 0.0 2.4 2 1 1 3 3 3 2 Rhodanese-like domain DrsE_2 PF13686.6 gi|307595482|ref|YP_003901799.1| - 9.7e-08 32.1 0.0 1.7e-07 31.2 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|307595482|ref|YP_003901799.1| - 8.2e-06 26.2 0.0 1.5e-05 25.4 0.0 1.5 1 1 0 1 1 1 1 DsrE/DsrF-like family AF0941-like PF14591.6 gi|307595482|ref|YP_003901799.1| - 0.097 13.2 0.1 0.85 10.2 0.2 1.9 2 0 0 2 2 2 0 AF0941-like Lyase_1 PF00206.20 gi|307595483|ref|YP_003901800.1| - 3.3e-85 286.2 0.0 4.6e-85 285.8 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|307595483|ref|YP_003901800.1| - 3e-11 43.6 0.8 1.3e-10 41.6 0.0 2.4 3 0 0 3 3 3 1 Fumarase C C-terminus Pirin PF02678.16 gi|307595484|ref|YP_003901801.1| - 2e-36 124.3 0.0 3.8e-36 123.3 0.0 1.5 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 gi|307595484|ref|YP_003901801.1| - 5.2e-31 107.1 0.0 4.7e-30 104.0 0.0 2.2 3 0 0 3 3 3 1 Pirin C-terminal cupin domain Cupin_2 PF07883.11 gi|307595484|ref|YP_003901801.1| - 4e-05 23.2 3.0 0.026 14.2 0.4 2.8 2 1 0 2 2 2 2 Cupin domain Cupin_3 PF05899.12 gi|307595484|ref|YP_003901801.1| - 0.017 14.8 0.4 0.19 11.4 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF861) HTH_5 PF01022.20 gi|307595485|ref|YP_003901802.1| - 1.9e-15 56.5 0.1 3.7e-15 55.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|307595485|ref|YP_003901802.1| - 1.9e-09 37.4 0.0 2.7e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|307595485|ref|YP_003901802.1| - 7.3e-08 31.8 0.1 1.3e-07 31.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|307595485|ref|YP_003901802.1| - 9.2e-06 25.5 0.2 1.6e-05 24.6 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|307595485|ref|YP_003901802.1| - 0.00043 20.1 0.0 0.0007 19.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|307595485|ref|YP_003901802.1| - 0.001 18.8 0.0 0.0023 17.7 0.0 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|307595485|ref|YP_003901802.1| - 0.0012 18.6 0.8 0.0033 17.2 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|307595485|ref|YP_003901802.1| - 0.0038 17.5 0.1 0.0068 16.7 0.1 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.6 gi|307595485|ref|YP_003901802.1| - 0.0058 16.8 0.0 0.012 15.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|307595485|ref|YP_003901802.1| - 0.0092 15.7 0.0 0.027 14.2 0.0 1.6 1 1 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_9 PF08221.11 gi|307595485|ref|YP_003901802.1| - 0.022 14.8 0.1 0.04 14.0 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|307595485|ref|YP_003901802.1| - 0.029 14.1 0.0 0.063 13.0 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain HTH_45 PF14947.6 gi|307595485|ref|YP_003901802.1| - 0.032 14.2 0.3 0.09 12.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix Penicillinase_R PF03965.16 gi|307595485|ref|YP_003901802.1| - 0.04 14.3 0.1 0.068 13.5 0.0 1.5 1 1 0 1 1 1 0 Penicillinase repressor FeoC PF09012.10 gi|307595485|ref|YP_003901802.1| - 0.086 12.9 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF1857 PF08982.11 gi|307595485|ref|YP_003901802.1| - 0.089 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1857) HTH_Tnp_Tc3_1 PF11427.8 gi|307595485|ref|YP_003901802.1| - 0.13 12.2 0.2 0.29 11.0 0.2 1.7 1 0 0 1 1 1 0 Tc3 transposase Redoxin PF08534.10 gi|307595486|ref|YP_003901803.1| - 3.1e-11 43.2 0.0 4e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|307595486|ref|YP_003901803.1| - 7e-09 35.7 0.0 1.4e-08 34.7 0.0 1.4 2 0 0 2 2 2 1 AhpC/TSA family DUF929 PF06053.11 gi|307595486|ref|YP_003901803.1| - 4.9e-05 22.8 4.0 6.1e-05 22.5 4.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF929) Thioredoxin_8 PF13905.6 gi|307595486|ref|YP_003901803.1| - 0.00064 20.0 0.0 0.0015 18.8 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|307595486|ref|YP_003901803.1| - 0.11 13.0 0.2 1.1 9.8 0.1 2.1 1 1 1 2 2 2 0 Thioredoxin-like domain Thioredoxin PF00085.20 gi|307595486|ref|YP_003901803.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin YHS PF04945.13 gi|307595488|ref|YP_003901805.1| - 1.4e-05 25.1 0.5 1.9e-05 24.7 0.5 1.1 1 0 0 1 1 1 1 YHS domain Ta0938 PF11494.8 gi|307595488|ref|YP_003901805.1| - 7.4e-05 23.0 0.2 8e-05 22.9 0.2 1.1 1 0 0 1 1 1 1 Ta0938 Arc_trans_TRASH PF08394.10 gi|307595488|ref|YP_003901805.1| - 0.00015 22.0 4.1 0.0002 21.6 4.1 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|307595488|ref|YP_003901805.1| - 0.0005 20.0 3.2 0.00075 19.4 3.2 1.3 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif PhnA_Zn_Ribbon PF08274.12 gi|307595488|ref|YP_003901805.1| - 0.00092 19.1 6.3 0.4 10.7 3.1 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zf-HC3 PF16827.5 gi|307595488|ref|YP_003901805.1| - 0.01 16.0 0.1 0.011 16.0 0.1 1.1 1 0 0 1 1 1 0 zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|307595488|ref|YP_003901805.1| - 0.02 14.9 3.6 0.037 14.0 3.6 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|307595488|ref|YP_003901805.1| - 0.021 14.9 4.6 1.8 8.7 2.8 2.1 2 0 0 2 2 2 0 Zinc ribbon domain ATPase-cat_bd PF12156.8 gi|307595488|ref|YP_003901805.1| - 0.022 15.5 5.2 0.026 15.2 5.2 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase DUF2318 PF10080.9 gi|307595488|ref|YP_003901805.1| - 0.023 14.8 2.0 0.069 13.3 0.0 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-C3HC4_3 PF13920.6 gi|307595488|ref|YP_003901805.1| - 0.44 10.4 7.7 3.3 7.6 7.8 1.9 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Pyr_redox_2 PF07992.14 gi|307595489|ref|YP_003901806.1| - 1.6e-60 204.9 0.3 2.1e-60 204.5 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|307595489|ref|YP_003901806.1| - 1.4e-28 99.3 0.1 2.6e-28 98.5 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|307595489|ref|YP_003901806.1| - 1.8e-15 57.0 3.6 6.7e-14 51.8 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307595489|ref|YP_003901806.1| - 7.3e-12 45.7 2.3 8.1e-12 45.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|307595489|ref|YP_003901806.1| - 3.9e-08 32.8 4.6 0.00072 18.7 1.5 3.9 3 1 0 3 3 3 2 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|307595489|ref|YP_003901806.1| - 0.0016 17.7 0.0 0.0053 16.0 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 gi|307595489|ref|YP_003901806.1| - 0.0022 16.7 1.3 3.3 6.3 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.7 gi|307595489|ref|YP_003901806.1| - 0.027 13.8 0.9 0.19 11.1 0.0 2.5 2 1 1 3 3 3 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|307595489|ref|YP_003901806.1| - 0.029 13.5 2.6 3.3 6.7 0.7 3.1 2 1 0 3 3 3 0 FAD binding domain CoA_binding_2 PF13380.6 gi|307595489|ref|YP_003901806.1| - 0.078 13.5 0.2 0.33 11.5 0.1 2.1 2 0 0 2 2 2 0 CoA binding domain DrsE PF02635.15 gi|307595490|ref|YP_003901807.1| - 0.023 15.1 0.0 0.029 14.7 0.0 1.3 1 1 0 1 1 1 0 DsrE/DsrF-like family FpoO PF10621.9 gi|307595490|ref|YP_003901807.1| - 0.19 12.1 0.0 0.26 11.6 0.0 1.2 1 0 0 1 1 1 0 F420H2 dehydrogenase subunit FpoO Rhodanese PF00581.20 gi|307595492|ref|YP_003901809.1| - 5e-39 133.1 0.1 2.3e-20 73.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain DUF3885 PF13021.6 gi|307595492|ref|YP_003901809.1| - 0.045 13.9 0.1 14 5.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3885) DUF1641 PF07849.11 gi|307595493|ref|YP_003901810.1| - 7.8e-15 54.5 0.4 1.2e-14 53.9 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) PmbA_TldD PF01523.16 gi|307595494|ref|YP_003901811.1| - 1.2e-27 97.5 0.2 1.6e-27 97.1 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|307595495|ref|YP_003901812.1| - 2.7e-54 184.9 0.1 4e-54 184.4 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase bPH_2 PF03703.14 gi|307595496|ref|YP_003901813.1| - 3.5e-05 23.9 0.0 6.2e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 Bacterial PH domain ABC_tran PF00005.27 gi|307595497|ref|YP_003901814.1| - 1.8e-27 96.5 0.0 2.3e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|307595497|ref|YP_003901814.1| - 2.8e-19 69.4 0.1 4.8e-19 68.6 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|307595497|ref|YP_003901814.1| - 4.2e-07 30.1 0.4 0.00026 20.9 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307595497|ref|YP_003901814.1| - 1.6e-06 27.7 0.0 2.4e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|307595497|ref|YP_003901814.1| - 4e-06 27.2 0.1 0.00012 22.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|307595497|ref|YP_003901814.1| - 6.5e-06 25.8 0.0 1.3e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TniB PF05621.11 gi|307595497|ref|YP_003901814.1| - 0.00011 21.6 0.1 0.036 13.5 0.1 2.4 2 0 0 2 2 2 1 Bacterial TniB protein AAA_16 PF13191.6 gi|307595497|ref|YP_003901814.1| - 0.00051 20.5 0.0 0.0011 19.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|307595497|ref|YP_003901814.1| - 0.0017 18.8 0.0 0.013 15.9 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|307595497|ref|YP_003901814.1| - 0.0029 17.4 0.1 0.013 15.3 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|307595497|ref|YP_003901814.1| - 0.006 16.2 0.2 0.037 13.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|307595497|ref|YP_003901814.1| - 0.021 14.8 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|307595497|ref|YP_003901814.1| - 0.053 13.6 0.1 0.16 12.1 0.0 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain Mg_chelatase PF01078.21 gi|307595497|ref|YP_003901814.1| - 0.053 12.9 0.0 0.14 11.5 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|307595497|ref|YP_003901814.1| - 0.065 13.4 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|307595497|ref|YP_003901814.1| - 0.07 12.3 0.0 0.093 11.9 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain NACHT PF05729.12 gi|307595497|ref|YP_003901814.1| - 0.099 12.6 0.1 0.2 11.5 0.0 1.6 1 1 1 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|307595497|ref|YP_003901814.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|307595497|ref|YP_003901814.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DnaB_C PF03796.15 gi|307595497|ref|YP_003901814.1| - 0.15 11.3 0.1 11 5.3 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain CbiA PF01656.23 gi|307595497|ref|YP_003901814.1| - 0.16 12.0 0.1 0.6 10.2 0.0 1.9 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.6 gi|307595497|ref|YP_003901814.1| - 0.17 12.4 0.0 0.38 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|307595498|ref|YP_003901815.1| - 7.1e-35 120.5 0.0 9.4e-35 120.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|307595498|ref|YP_003901815.1| - 2.4e-18 66.4 0.0 4.3e-18 65.6 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|307595498|ref|YP_003901815.1| - 1.5e-08 34.8 0.8 8.3e-05 22.5 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|307595498|ref|YP_003901815.1| - 2e-07 31.4 0.1 9.7e-07 29.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|307595498|ref|YP_003901815.1| - 1.8e-06 27.5 0.1 4.1e-06 26.4 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|307595498|ref|YP_003901815.1| - 0.00074 18.3 0.2 0.67 8.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|307595498|ref|YP_003901815.1| - 0.0017 18.0 1.3 0.48 10.0 0.3 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|307595498|ref|YP_003901815.1| - 0.004 16.9 0.1 0.0076 16.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|307595498|ref|YP_003901815.1| - 0.0072 16.7 0.6 0.016 15.6 0.6 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|307595498|ref|YP_003901815.1| - 0.01 16.3 0.1 0.26 11.7 0.0 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|307595498|ref|YP_003901815.1| - 0.012 15.5 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|307595498|ref|YP_003901815.1| - 0.012 15.8 0.2 0.12 12.6 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase PF06745.13 gi|307595498|ref|YP_003901815.1| - 0.025 13.9 0.0 0.049 13.0 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_15 PF13175.6 gi|307595498|ref|YP_003901815.1| - 0.027 14.2 0.0 0.066 12.9 0.0 1.5 1 1 0 2 2 2 0 AAA ATPase domain DLIC PF05783.11 gi|307595498|ref|YP_003901815.1| - 0.034 13.0 0.0 0.048 12.5 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 gi|307595498|ref|YP_003901815.1| - 0.055 14.0 0.0 0.12 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|307595498|ref|YP_003901815.1| - 0.094 13.2 0.1 0.16 12.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|307595498|ref|YP_003901815.1| - 0.096 12.6 0.2 0.24 11.3 0.1 1.7 2 0 0 2 2 2 0 NACHT domain HECW1_helix PF18436.1 gi|307595498|ref|YP_003901815.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Helical box domain of E3 ubiquitin-protein ligase HECW1 AAA_5 PF07728.14 gi|307595498|ref|YP_003901815.1| - 0.16 12.0 0.1 2.6 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|307595498|ref|YP_003901815.1| - 0.2 11.8 0.5 0.64 10.2 0.5 1.9 1 1 0 1 1 1 0 AAA domain SBP_bac_5 PF00496.22 gi|307595499|ref|YP_003901816.1| - 5.7e-66 223.0 4.1 5.7e-66 223.0 4.1 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|307595500|ref|YP_003901817.1| - 2.9e-44 151.0 12.5 2.9e-44 151.0 12.5 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UL42 PF17638.2 gi|307595500|ref|YP_003901817.1| - 0.041 13.9 1.9 7.7 6.5 0.2 3.5 3 0 0 3 3 3 0 HCMV UL42 Sigma_reg_N PF13800.6 gi|307595500|ref|YP_003901817.1| - 1.4 9.3 10.4 6.1 7.2 0.4 3.4 3 0 0 3 3 3 0 Sigma factor regulator N-terminal Vma12 PF11712.8 gi|307595500|ref|YP_003901817.1| - 4.5 7.3 5.5 8.9 6.4 0.2 2.4 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase BPD_transp_1 PF00528.22 gi|307595501|ref|YP_003901818.1| - 6.3e-26 91.3 12.5 6.3e-26 91.3 12.5 2.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3169 PF11368.8 gi|307595501|ref|YP_003901818.1| - 1.5 8.3 7.3 0.094 12.2 2.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) PaREP1 PF05942.11 gi|307595502|ref|YP_003901819.1| - 1.5e-27 95.8 0.6 1.7e-27 95.6 0.6 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family AA_permease_2 PF13520.6 gi|307595503|ref|YP_003901820.1| - 2.6e-31 108.9 54.0 2.6e-31 108.9 54.0 2.6 1 1 0 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|307595503|ref|YP_003901820.1| - 1.1e-19 70.4 55.7 1.1e-19 70.4 55.7 2.3 1 1 0 2 2 2 1 Amino acid permease HTH_11 PF08279.12 gi|307595504|ref|YP_003901821.1| - 5.3e-05 23.1 0.1 0.00014 21.7 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|307595504|ref|YP_003901821.1| - 0.02 14.7 0.0 0.046 13.5 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain RP-C PF03428.13 gi|307595504|ref|YP_003901821.1| - 0.067 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_45 PF14947.6 gi|307595504|ref|YP_003901821.1| - 0.068 13.2 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix Abhydrolase_3 PF07859.13 gi|307595505|ref|YP_003901822.1| - 1e-74 251.0 0.0 1.3e-74 250.6 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|307595505|ref|YP_003901822.1| - 4.3e-15 55.6 0.2 1.4e-14 53.8 0.2 1.7 1 1 0 1 1 1 1 Carboxylesterase family Chlorophyllase2 PF12740.7 gi|307595505|ref|YP_003901822.1| - 1.1e-07 31.1 0.0 1.5e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Peptidase_S9 PF00326.21 gi|307595505|ref|YP_003901822.1| - 1.2e-05 24.9 0.0 6.2e-05 22.6 0.0 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|307595505|ref|YP_003901822.1| - 3.9e-05 24.4 0.7 8.7e-05 23.2 0.7 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Say1_Mug180 PF10340.9 gi|307595505|ref|YP_003901822.1| - 0.00024 20.1 0.0 0.00033 19.6 0.0 1.2 1 0 0 1 1 1 1 Steryl acetyl hydrolase Chlorophyllase PF07224.11 gi|307595505|ref|YP_003901822.1| - 0.00065 18.8 0.0 0.00088 18.4 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase Thioesterase PF00975.20 gi|307595505|ref|YP_003901822.1| - 0.011 15.8 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain AXE1 PF05448.12 gi|307595505|ref|YP_003901822.1| - 0.035 12.8 0.0 1.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) DUF2974 PF11187.8 gi|307595505|ref|YP_003901822.1| - 0.071 12.7 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Hydrolase_4 PF12146.8 gi|307595505|ref|YP_003901822.1| - 0.087 12.1 0.0 0.2 10.9 0.0 1.7 1 1 0 1 1 1 0 Serine aminopeptidase, S33 FeoA PF04023.14 gi|307595506|ref|YP_003901823.1| - 3.6e-05 23.9 0.1 4.3e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|307595507|ref|YP_003901824.1| - 1.1e-46 158.2 0.1 1.7e-46 157.6 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|307595507|ref|YP_003901824.1| - 2.4e-26 92.2 18.3 5e-21 75.1 5.5 4.0 3 1 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|307595507|ref|YP_003901824.1| - 1.9e-15 56.9 0.1 3.8e-15 56.0 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|307595507|ref|YP_003901824.1| - 2.9e-07 30.1 0.0 5e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|307595507|ref|YP_003901824.1| - 2.1e-05 24.2 0.0 0.00015 21.3 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|307595507|ref|YP_003901824.1| - 0.00025 20.5 0.0 0.00051 19.5 0.0 1.5 1 0 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.9 gi|307595507|ref|YP_003901824.1| - 0.035 13.8 0.0 0.095 12.4 0.0 1.8 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|307595507|ref|YP_003901824.1| - 0.039 13.8 0.0 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|307595507|ref|YP_003901824.1| - 0.16 12.6 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2182 PF09948.9 gi|307595508|ref|YP_003901825.1| - 1.6 8.6 9.4 0.38 10.6 1.5 2.4 2 0 0 2 2 2 0 Predicted metal-binding integral membrane protein (DUF2182) ALAD PF00490.21 gi|307595509|ref|YP_003901826.1| - 9.8e-149 494.8 0.1 1.1e-148 494.6 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_1_2 PF00155.21 gi|307595510|ref|YP_003901827.1| - 2.6e-43 148.6 0.0 3e-43 148.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|307595510|ref|YP_003901827.1| - 3.7e-14 52.3 0.0 5.3e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 gi|307595510|ref|YP_003901827.1| - 0.006 15.9 0.0 0.0093 15.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family ECH_1 PF00378.20 gi|307595510|ref|YP_003901827.1| - 0.17 11.2 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase DUF87 PF01935.17 gi|307595511|ref|YP_003901828.1| - 8.4e-10 39.1 0.2 4.2e-09 36.8 0.2 2.3 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|307595511|ref|YP_003901828.1| - 0.00017 20.7 0.0 0.0019 17.2 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|307595511|ref|YP_003901828.1| - 0.00039 20.7 0.0 0.029 14.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|307595511|ref|YP_003901828.1| - 0.00047 19.2 0.3 0.0048 15.9 0.0 2.2 2 1 0 2 2 2 1 AAA-like domain AAA PF00004.29 gi|307595511|ref|YP_003901828.1| - 0.00048 20.6 0.1 0.052 14.0 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|307595511|ref|YP_003901828.1| - 0.0014 18.5 0.2 0.031 14.2 0.0 2.3 2 0 0 2 2 2 1 Rad17 P-loop domain Viral_helicase1 PF01443.18 gi|307595511|ref|YP_003901828.1| - 0.0029 17.4 0.0 0.0048 16.7 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|307595511|ref|YP_003901828.1| - 0.0047 17.3 0.0 0.012 16.0 0.0 1.7 1 0 0 1 1 1 1 RNA helicase ATPase_2 PF01637.18 gi|307595511|ref|YP_003901828.1| - 0.0083 16.1 0.3 0.59 10.0 0.0 2.3 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|307595511|ref|YP_003901828.1| - 0.0085 16.1 0.3 0.11 12.6 0.0 2.5 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.12 gi|307595511|ref|YP_003901828.1| - 0.01 15.1 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 gi|307595511|ref|YP_003901828.1| - 0.033 14.6 0.0 0.069 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|307595511|ref|YP_003901828.1| - 0.039 13.9 0.2 0.16 11.9 0.0 2.1 3 0 0 3 3 2 0 NACHT domain MMR_HSR1 PF01926.23 gi|307595511|ref|YP_003901828.1| - 0.046 13.8 0.0 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|307595511|ref|YP_003901828.1| - 0.047 13.7 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.14 gi|307595511|ref|YP_003901828.1| - 0.059 12.6 0.0 0.08 12.2 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain AAA_19 PF13245.6 gi|307595511|ref|YP_003901828.1| - 0.065 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|307595511|ref|YP_003901828.1| - 0.087 13.0 0.0 0.27 11.4 0.0 1.8 3 0 0 3 3 1 0 AAA domain Mg_chelatase PF01078.21 gi|307595511|ref|YP_003901828.1| - 0.098 12.0 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.18 gi|307595511|ref|YP_003901828.1| - 0.13 11.6 0.0 0.52 9.6 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_7 PF12775.7 gi|307595511|ref|YP_003901828.1| - 0.14 11.7 0.0 0.32 10.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|307595511|ref|YP_003901828.1| - 0.2 11.4 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|307595511|ref|YP_003901828.1| - 0.23 11.2 0.0 0.48 10.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain MTHFR PF02219.17 gi|307595512|ref|YP_003901829.1| - 0.00054 19.4 0.0 0.0012 18.2 0.0 1.7 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase DUF4159 PF13709.6 gi|307595512|ref|YP_003901829.1| - 0.019 14.4 0.0 0.037 13.4 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) ParA PF10609.9 gi|307595513|ref|YP_003901830.1| - 2.2e-89 299.1 0.0 2.7e-89 298.8 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|307595513|ref|YP_003901830.1| - 2.1e-12 47.2 0.0 2.1e-11 44.0 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|307595513|ref|YP_003901830.1| - 0.00014 21.1 0.4 0.00028 20.2 0.4 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|307595513|ref|YP_003901830.1| - 0.00017 21.6 0.2 0.00095 19.1 0.1 2.0 1 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|307595513|ref|YP_003901830.1| - 0.0091 15.6 0.3 0.019 14.6 0.3 1.5 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|307595513|ref|YP_003901830.1| - 0.022 13.8 0.5 0.041 12.9 0.1 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|307595513|ref|YP_003901830.1| - 0.031 13.7 0.0 0.12 11.7 0.1 1.9 2 1 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|307595513|ref|YP_003901830.1| - 0.039 13.2 0.0 0.073 12.4 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ RC-P840_PscD PF10657.9 gi|307595513|ref|YP_003901830.1| - 0.083 13.0 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD AAA_26 PF13500.6 gi|307595513|ref|YP_003901830.1| - 0.17 11.7 0.1 15 5.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|307595513|ref|YP_003901830.1| - 0.18 11.6 0.1 0.75 9.5 0.1 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein GTP_EFTU PF00009.27 gi|307595514|ref|YP_003901831.1| - 2.3e-59 200.2 0.1 3.5e-59 199.6 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|307595514|ref|YP_003901831.1| - 1.1e-29 102.7 0.0 4.7e-29 100.6 0.0 2.2 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|307595514|ref|YP_003901831.1| - 9e-24 83.4 0.1 2.3e-23 82.1 0.1 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|307595514|ref|YP_003901831.1| - 3.8e-23 81.3 0.0 1.1e-22 79.9 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|307595514|ref|YP_003901831.1| - 1.4e-15 57.5 0.2 4.4e-15 55.8 0.2 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|307595514|ref|YP_003901831.1| - 0.0035 17.4 0.0 0.0075 16.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|307595514|ref|YP_003901831.1| - 0.022 14.5 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain Ras PF00071.22 gi|307595514|ref|YP_003901831.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Ras family DUF910 PF06014.11 gi|307595515|ref|YP_003901832.1| - 0.018 15.0 0.0 0.043 13.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF910) Reprolysin_5 PF13688.6 gi|307595515|ref|YP_003901832.1| - 0.035 14.2 2.2 0.076 13.2 0.3 2.3 2 1 1 3 3 3 0 Metallo-peptidase family M12 Lactamase_B PF00753.27 gi|307595516|ref|YP_003901833.1| - 1.5e-10 41.5 0.8 1.8e-10 41.1 0.8 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|307595516|ref|YP_003901833.1| - 0.00011 21.8 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Toxin_6 PF05453.12 gi|307595516|ref|YP_003901833.1| - 0.16 12.5 0.1 0.3 11.6 0.1 1.4 1 0 0 1 1 1 0 BmTXKS1/BmP02 toxin family DEK_C PF08766.11 gi|307595516|ref|YP_003901833.1| - 0.18 11.7 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 DEK C terminal domain Cas_Cas2CT1978 PF09707.10 gi|307595517|ref|YP_003901834.1| - 0.041 13.9 0.6 3.3 7.8 0.1 2.1 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Cas2CT1978) FaeA PF04703.12 gi|307595518|ref|YP_003901835.1| - 0.066 13.6 0.1 0.12 12.7 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein RIFIN PF02009.16 gi|307595518|ref|YP_003901835.1| - 0.38 10.6 3.4 0.39 10.6 3.4 1.2 1 0 0 1 1 1 0 Rifin DUF5305 PF17231.2 gi|307595518|ref|YP_003901835.1| - 0.63 9.4 6.5 1 8.7 6.5 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5305) MaoC_dehydratas PF01575.19 gi|307595519|ref|YP_003901836.1| - 6.9e-28 96.7 0.1 9e-28 96.3 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|307595519|ref|YP_003901836.1| - 3.4e-09 36.9 0.1 5.5e-09 36.3 0.1 1.3 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|307595519|ref|YP_003901836.1| - 0.00093 19.5 0.1 0.0027 18.0 0.1 1.8 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|307595519|ref|YP_003901836.1| - 0.012 16.1 0.0 0.014 15.9 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily FlaC_arch PF05377.11 gi|307595520|ref|YP_003901837.1| - 6.6e-06 26.4 6.9 0.0014 19.0 1.0 3.8 2 1 2 4 4 4 2 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 gi|307595520|ref|YP_003901837.1| - 2e-05 25.0 0.1 0.099 13.1 0.0 3.0 2 1 1 3 3 3 2 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|307595520|ref|YP_003901837.1| - 2.5e-05 24.3 1.6 0.00084 19.4 0.0 2.4 2 1 1 3 3 2 1 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|307595520|ref|YP_003901837.1| - 4.3e-05 23.7 0.2 0.014 15.6 0.0 2.3 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.9 gi|307595520|ref|YP_003901837.1| - 6.1e-05 23.1 6.9 0.0011 19.1 1.0 3.0 2 1 3 5 5 4 3 Haemolysin XhlA DUF3450 PF11932.8 gi|307595520|ref|YP_003901837.1| - 8.7e-05 21.9 0.1 0.00037 19.9 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3450) Seryl_tRNA_N PF02403.22 gi|307595520|ref|YP_003901837.1| - 0.00017 21.8 0.1 0.071 13.3 0.0 2.5 2 1 1 3 3 2 2 Seryl-tRNA synthetase N-terminal domain DUF16 PF01519.16 gi|307595520|ref|YP_003901837.1| - 0.00018 22.0 0.5 0.029 14.9 0.0 2.5 2 1 1 3 3 2 2 Protein of unknown function DUF16 Tropomyosin PF00261.20 gi|307595520|ref|YP_003901837.1| - 0.00019 20.9 0.8 0.00042 19.8 0.8 1.6 1 1 0 1 1 1 1 Tropomyosin CENP-F_leu_zip PF10473.9 gi|307595520|ref|YP_003901837.1| - 0.0003 20.8 0.4 0.0018 18.3 0.1 1.9 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ABC_tran_CTD PF16326.5 gi|307595520|ref|YP_003901837.1| - 0.00038 20.6 0.2 0.0021 18.2 0.1 2.3 2 1 1 3 3 1 1 ABC transporter C-terminal domain Tropomyosin_1 PF12718.7 gi|307595520|ref|YP_003901837.1| - 0.00047 20.3 0.1 0.00088 19.4 0.1 1.4 1 0 0 1 1 1 1 Tropomyosin like DUF2730 PF10805.8 gi|307595520|ref|YP_003901837.1| - 0.00056 20.0 0.2 0.0038 17.3 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) CLZ PF16526.5 gi|307595520|ref|YP_003901837.1| - 0.00077 19.8 0.8 0.24 11.8 0.5 2.9 1 1 1 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels EzrA PF06160.12 gi|307595520|ref|YP_003901837.1| - 0.00093 17.5 0.1 0.0017 16.6 0.1 1.4 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA GAS PF13851.6 gi|307595520|ref|YP_003901837.1| - 0.00097 18.5 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding TMPIT PF07851.13 gi|307595520|ref|YP_003901837.1| - 0.0012 18.1 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 TMPIT-like protein DUF948 PF06103.11 gi|307595520|ref|YP_003901837.1| - 0.0014 18.8 0.5 0.16 12.3 0.0 2.8 2 1 2 4 4 4 1 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.12 gi|307595520|ref|YP_003901837.1| - 0.0019 18.3 0.2 0.0066 16.5 0.0 1.9 2 1 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Prefoldin_2 PF01920.20 gi|307595520|ref|YP_003901837.1| - 0.0033 17.3 0.2 2 8.4 0.0 3.1 1 1 3 4 4 4 1 Prefoldin subunit EMP24_GP25L PF01105.24 gi|307595520|ref|YP_003901837.1| - 0.0036 17.3 0.2 0.021 14.7 0.2 2.1 1 1 0 1 1 1 1 emp24/gp25L/p24 family/GOLD Laminin_II PF06009.12 gi|307595520|ref|YP_003901837.1| - 0.0038 17.2 0.4 0.022 14.7 0.1 2.2 2 1 0 2 2 2 1 Laminin Domain II Nsp1_C PF05064.13 gi|307595520|ref|YP_003901837.1| - 0.0063 16.3 0.0 0.018 14.8 0.0 1.6 1 1 0 1 1 1 1 Nsp1-like C-terminal region TelA PF05816.11 gi|307595520|ref|YP_003901837.1| - 0.0068 15.5 0.2 0.023 13.8 0.1 1.9 2 1 0 2 2 1 1 Toxic anion resistance protein (TelA) DUF4164 PF13747.6 gi|307595520|ref|YP_003901837.1| - 0.0082 16.4 5.6 0.21 11.9 2.0 3.5 2 1 1 3 3 3 1 Domain of unknown function (DUF4164) Filament PF00038.21 gi|307595520|ref|YP_003901837.1| - 0.0092 15.6 0.2 0.015 14.9 0.2 1.4 1 0 0 1 1 1 1 Intermediate filament protein Snapin_Pallidin PF14712.6 gi|307595520|ref|YP_003901837.1| - 0.0095 16.3 0.3 0.11 12.9 0.0 2.6 2 1 0 2 2 1 1 Snapin/Pallidin HAUS-augmin3 PF14932.6 gi|307595520|ref|YP_003901837.1| - 0.0096 15.5 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 RmuC PF02646.16 gi|307595520|ref|YP_003901837.1| - 0.0099 15.0 0.2 0.28 10.3 0.0 2.1 1 1 1 2 2 2 2 RmuC family PTRF_SDPR PF15237.6 gi|307595520|ref|YP_003901837.1| - 0.011 15.3 0.3 0.028 14.0 0.2 1.7 1 1 0 1 1 1 0 PTRF/SDPR family DUF4988 PF16378.5 gi|307595520|ref|YP_003901837.1| - 0.013 15.2 1.1 2 8.0 0.1 3.0 1 1 2 3 3 3 0 Domain of unknown function CorA PF01544.18 gi|307595520|ref|YP_003901837.1| - 0.019 14.3 1.0 0.082 12.2 0.7 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein HrpB7 PF09486.10 gi|307595520|ref|YP_003901837.1| - 0.02 15.3 2.5 0.059 13.8 0.3 2.3 2 1 1 3 3 2 0 Bacterial type III secretion protein (HrpB7) CCDC-167 PF15188.6 gi|307595520|ref|YP_003901837.1| - 0.027 14.8 3.7 1.2 9.6 3.2 2.6 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 COG6 PF06419.11 gi|307595520|ref|YP_003901837.1| - 0.027 12.7 0.1 1.9 6.6 0.0 2.1 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 DUF5082 PF16888.5 gi|307595520|ref|YP_003901837.1| - 0.028 14.7 0.3 0.31 11.3 0.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF5082) Myosin_tail_1 PF01576.19 gi|307595520|ref|YP_003901837.1| - 0.031 12.1 0.3 0.041 11.7 0.3 1.1 1 0 0 1 1 1 0 Myosin tail Vac_Fusion PF02346.16 gi|307595520|ref|YP_003901837.1| - 0.031 13.9 0.6 0.15 11.7 0.5 2.3 1 1 1 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 LPP PF04728.13 gi|307595520|ref|YP_003901837.1| - 0.034 14.5 0.2 0.91 10.0 0.0 2.7 2 1 1 3 3 2 0 Lipoprotein leucine-zipper Spc7 PF08317.11 gi|307595520|ref|YP_003901837.1| - 0.036 13.0 0.0 0.055 12.3 0.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Syntaxin PF00804.25 gi|307595520|ref|YP_003901837.1| - 0.036 13.7 0.2 0.066 12.9 0.2 1.4 1 0 0 1 1 1 0 Syntaxin DUF677 PF05055.12 gi|307595520|ref|YP_003901837.1| - 0.04 12.8 0.3 0.057 12.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DHR10 PF18595.1 gi|307595520|ref|YP_003901837.1| - 0.041 13.9 0.0 0.51 10.4 0.0 2.2 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain Fib_alpha PF08702.10 gi|307595520|ref|YP_003901837.1| - 0.041 14.1 0.1 0.17 12.1 0.1 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF3552 PF12072.8 gi|307595520|ref|YP_003901837.1| - 0.041 13.3 0.1 0.062 12.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Fez1 PF06818.15 gi|307595520|ref|YP_003901837.1| - 0.042 14.3 0.0 0.074 13.5 0.0 1.4 1 0 0 1 1 1 0 Fez1 Glyco_H_20C_C PF18088.1 gi|307595520|ref|YP_003901837.1| - 0.042 13.7 0.4 0.08 12.8 0.4 1.5 1 1 0 1 1 1 0 Glycoside Hydrolase 20C C-terminal domain Laminin_I PF06008.14 gi|307595520|ref|YP_003901837.1| - 0.044 13.5 0.1 0.28 10.9 0.1 2.0 1 1 0 1 1 1 0 Laminin Domain I FPP PF05911.11 gi|307595520|ref|YP_003901837.1| - 0.053 11.7 0.0 0.065 11.4 0.0 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil CALCOCO1 PF07888.11 gi|307595520|ref|YP_003901837.1| - 0.056 12.3 0.1 0.077 11.9 0.1 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Sugarporin_N PF11471.8 gi|307595520|ref|YP_003901837.1| - 0.06 13.3 0.0 0.14 12.1 0.0 1.7 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension DUF4349 PF14257.6 gi|307595520|ref|YP_003901837.1| - 0.06 12.8 1.9 17 4.8 0.0 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) ATG16 PF08614.11 gi|307595520|ref|YP_003901837.1| - 0.062 13.5 0.2 0.088 13.0 0.2 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) FliD_C PF07195.12 gi|307595520|ref|YP_003901837.1| - 0.064 12.7 0.0 0.17 11.3 0.0 1.8 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus AAA_13 PF13166.6 gi|307595520|ref|YP_003901837.1| - 0.064 11.9 0.0 0.085 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Tektin PF03148.14 gi|307595520|ref|YP_003901837.1| - 0.069 11.9 0.2 0.14 10.9 0.2 1.4 1 0 0 1 1 1 0 Tektin family MscS_porin PF12795.7 gi|307595520|ref|YP_003901837.1| - 0.073 12.6 0.0 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Allexi_40kDa PF05549.11 gi|307595520|ref|YP_003901837.1| - 0.075 12.5 0.1 0.23 11.0 0.1 1.7 1 1 0 1 1 1 0 Allexivirus 40kDa protein Lebercilin PF15619.6 gi|307595520|ref|YP_003901837.1| - 0.08 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Med11 PF10280.9 gi|307595520|ref|YP_003901837.1| - 0.083 13.3 0.0 0.26 11.8 0.0 2.0 1 1 0 1 1 1 0 Mediator complex protein TRPM_tetra PF16519.5 gi|307595520|ref|YP_003901837.1| - 0.086 13.0 0.1 0.086 13.0 0.1 3.0 2 1 1 3 3 3 0 Tetramerisation domain of TRPM LXG PF04740.12 gi|307595520|ref|YP_003901837.1| - 0.092 12.4 0.1 0.41 10.3 0.1 2.0 1 1 0 1 1 1 0 LXG domain of WXG superfamily Rx_N PF18052.1 gi|307595520|ref|YP_003901837.1| - 0.093 13.0 0.7 11 6.4 0.2 2.4 1 1 1 2 2 2 0 Rx N-terminal domain Osmo_CC PF08946.10 gi|307595520|ref|YP_003901837.1| - 0.11 12.7 1.3 16 5.8 0.2 2.5 1 1 0 2 2 2 0 Osmosensory transporter coiled coil B2 PF11473.8 gi|307595520|ref|YP_003901837.1| - 0.13 12.1 0.1 0.97 9.3 0.0 2.3 2 1 1 3 3 2 0 RNA binding protein B2 IFT57 PF10498.9 gi|307595520|ref|YP_003901837.1| - 0.13 11.2 0.1 0.3 10.0 0.1 1.5 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 DUF4795 PF16043.5 gi|307595520|ref|YP_003901837.1| - 0.16 11.6 0.1 0.29 10.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Filo_VP35 PF02097.15 gi|307595520|ref|YP_003901837.1| - 0.19 10.8 0.3 0.78 8.7 0.1 2.0 1 1 1 2 2 2 0 Filoviridae VP35 WXG100 PF06013.12 gi|307595520|ref|YP_003901837.1| - 0.19 12.0 0.1 39 4.6 0.0 2.9 2 1 1 3 3 2 0 Proteins of 100 residues with WXG Helo_like_N PF17111.5 gi|307595520|ref|YP_003901837.1| - 0.2 11.0 0.9 5 6.4 0.4 2.1 1 1 1 2 2 2 0 Fungal N-terminal domain of STAND proteins V_ATPase_I PF01496.19 gi|307595520|ref|YP_003901837.1| - 0.23 9.3 0.0 0.27 9.1 0.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family UPF0184 PF03670.13 gi|307595520|ref|YP_003901837.1| - 0.36 11.2 2.1 0.5 10.8 0.2 2.3 3 1 0 3 3 1 0 Uncharacterised protein family (UPF0184) COG2 PF06148.11 gi|307595520|ref|YP_003901837.1| - 0.38 10.8 3.6 3.8 7.6 1.7 2.6 2 1 0 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 SNARE PF05739.19 gi|307595520|ref|YP_003901837.1| - 8.1 6.5 7.5 43 4.2 0.0 3.6 3 1 1 4 4 4 0 SNARE domain Radical_SAM PF04055.21 gi|307595521|ref|YP_003901838.1| - 9.4e-20 71.6 0.2 1.4e-19 71.1 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|307595521|ref|YP_003901838.1| - 3.6e-05 23.9 0.1 9.6e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|307595521|ref|YP_003901838.1| - 0.022 15.0 0.1 0.16 12.3 0.2 2.0 1 1 1 2 2 2 0 4Fe-4S single cluster domain Haem_degrading PF03928.14 gi|307595522|ref|YP_003901839.1| - 1.7e-46 157.2 0.4 6.9e-28 97.1 0.3 2.0 2 0 0 2 2 2 2 Haem-degrading DAO PF01266.24 gi|307595523|ref|YP_003901840.1| - 3.5e-44 151.8 0.0 4e-44 151.6 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|307595523|ref|YP_003901840.1| - 6.4e-10 38.7 0.1 5.3e-06 25.9 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|307595523|ref|YP_003901840.1| - 6.6e-09 35.9 0.1 2.2e-08 34.2 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|307595523|ref|YP_003901840.1| - 3.6e-08 33.8 1.3 0.00091 19.7 0.1 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|307595523|ref|YP_003901840.1| - 3.3e-07 29.9 0.3 1.3e-05 24.6 0.0 2.3 3 0 0 3 3 3 1 FAD binding domain Lycopene_cycl PF05834.12 gi|307595523|ref|YP_003901840.1| - 1.1e-06 27.9 0.3 0.00018 20.7 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|307595523|ref|YP_003901840.1| - 1.7e-05 24.3 1.6 0.018 14.3 0.3 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|307595523|ref|YP_003901840.1| - 3.5e-05 22.7 0.6 0.0085 14.8 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Trp_halogenase PF04820.14 gi|307595523|ref|YP_003901840.1| - 0.00048 19.1 0.7 0.3 9.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.22 gi|307595523|ref|YP_003901840.1| - 0.00052 19.2 0.0 0.0027 16.9 0.0 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|307595523|ref|YP_003901840.1| - 0.00062 19.1 0.1 0.0037 16.6 0.0 2.1 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|307595523|ref|YP_003901840.1| - 0.0012 18.0 0.6 0.002 17.3 0.2 1.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.6 gi|307595523|ref|YP_003901840.1| - 0.0019 18.2 0.2 0.1 12.6 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|307595523|ref|YP_003901840.1| - 0.0029 16.9 0.0 1.9 7.7 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase TrkA_N PF02254.18 gi|307595523|ref|YP_003901840.1| - 0.0055 17.0 0.1 0.011 16.0 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain Mqo PF06039.15 gi|307595523|ref|YP_003901840.1| - 0.012 14.2 0.2 0.021 13.4 0.1 1.4 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) 3HCDH_N PF02737.18 gi|307595523|ref|YP_003901840.1| - 0.071 13.0 0.4 0.17 11.8 0.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|307595523|ref|YP_003901840.1| - 0.095 12.0 0.1 1.3 8.3 0.2 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Radical_SAM PF04055.21 gi|307595524|ref|YP_003901841.1| - 1e-20 74.8 0.1 4.3e-20 72.7 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|307595524|ref|YP_003901841.1| - 0.00027 21.1 0.0 0.00053 20.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|307595524|ref|YP_003901841.1| - 0.00027 21.2 0.0 0.00053 20.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SGT1 PF07093.11 gi|307595524|ref|YP_003901841.1| - 0.19 10.1 0.0 0.27 9.6 0.0 1.1 1 0 0 1 1 1 0 SGT1 protein SCP2 PF02036.17 gi|307595525|ref|YP_003901842.1| - 0.015 15.8 0.0 0.022 15.2 0.0 1.3 1 0 0 1 1 1 0 SCP-2 sterol transfer family HTH_27 PF13463.6 gi|307595526|ref|YP_003901843.1| - 0.029 14.9 0.0 0.037 14.5 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain BPD_transp_1 PF00528.22 gi|307595527|ref|YP_003901844.1| - 1.4e-15 57.5 58.7 2e-10 40.7 30.3 4.2 1 1 3 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|307595528|ref|YP_003901845.1| - 1.2e-14 55.0 2.1 2.5e-14 53.9 2.1 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|307595528|ref|YP_003901845.1| - 1.6e-08 34.8 0.3 3.6e-08 33.5 0.3 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|307595528|ref|YP_003901845.1| - 0.015 15.1 0.6 0.93 9.2 0.1 2.6 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein VirB8 PF04335.13 gi|307595528|ref|YP_003901845.1| - 0.34 10.7 2.1 0.66 9.8 2.1 1.4 1 0 0 1 1 1 0 VirB8 protein Lactamase_B_2 PF12706.7 gi|307595529|ref|YP_003901846.1| - 5.1e-22 78.4 0.4 6e-22 78.2 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|307595529|ref|YP_003901846.1| - 2.5e-08 34.2 0.2 2.5e-08 34.2 0.2 1.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|307595529|ref|YP_003901846.1| - 0.00011 22.1 0.1 0.00028 20.8 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|307595529|ref|YP_003901846.1| - 0.00065 19.2 0.0 0.0014 18.1 0.0 1.5 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_4 PF13691.6 gi|307595529|ref|YP_003901846.1| - 0.14 11.9 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 tRNase Z endonuclease Epimerase PF01370.21 gi|307595531|ref|YP_003901848.1| - 8.9e-19 67.9 0.0 1.2e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|307595531|ref|YP_003901848.1| - 1.1e-07 31.2 0.0 4.1e-07 29.4 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|307595531|ref|YP_003901848.1| - 3.3e-07 30.0 0.1 2.4e-06 27.2 0.0 2.2 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|307595531|ref|YP_003901848.1| - 7.5e-06 25.3 0.0 2.4e-05 23.6 0.0 1.8 1 1 1 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.19 gi|307595531|ref|YP_003901848.1| - 0.00016 20.8 0.0 0.00022 20.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Sacchrp_dh_NADP PF03435.18 gi|307595531|ref|YP_003901848.1| - 0.00041 20.6 0.0 0.0007 19.9 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|307595531|ref|YP_003901848.1| - 0.00043 20.4 0.0 0.0018 18.4 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|307595531|ref|YP_003901848.1| - 0.0018 18.2 0.0 0.0027 17.6 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_2 PF03446.15 gi|307595531|ref|YP_003901848.1| - 0.078 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase MFS_1 PF07690.16 gi|307595532|ref|YP_003901849.1| - 1.6e-39 135.8 72.6 3.2e-37 128.3 69.8 3.2 2 1 0 2 2 2 2 Major Facilitator Superfamily FMN_dh PF01070.18 gi|307595534|ref|YP_003901851.1| - 1.9e-24 86.4 2.4 2.8e-16 59.5 2.1 2.2 1 1 0 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|307595534|ref|YP_003901851.1| - 2e-07 30.5 0.8 1.3e-06 27.8 0.4 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.25 gi|307595534|ref|YP_003901851.1| - 0.00033 19.8 8.1 0.0028 16.7 7.9 2.6 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|307595534|ref|YP_003901851.1| - 0.069 12.3 2.4 0.11 11.7 2.1 1.4 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase Zn_Tnp_IS1595 PF12760.7 gi|307595535|ref|YP_003901852.1| - 0.00042 20.2 0.3 0.0049 16.8 0.4 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|307595535|ref|YP_003901852.1| - 0.0012 18.6 2.7 0.11 12.4 2.7 2.3 1 1 0 1 1 1 1 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.12 gi|307595535|ref|YP_003901852.1| - 0.0064 16.0 0.1 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|307595535|ref|YP_003901852.1| - 0.0091 16.4 0.2 0.014 15.8 0.1 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|307595535|ref|YP_003901852.1| - 0.01 15.8 0.3 0.029 14.3 0.1 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|307595535|ref|YP_003901852.1| - 0.049 13.8 0.2 5.4 7.2 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|307595535|ref|YP_003901852.1| - 0.059 13.4 1.1 8.8 6.4 0.1 3.1 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HYPF PF07503.12 gi|307595535|ref|YP_003901852.1| - 0.082 12.7 1.6 0.13 12.1 0.1 2.0 2 0 0 2 2 2 0 HypF finger UPF0547 PF10571.9 gi|307595535|ref|YP_003901852.1| - 0.69 10.0 4.4 3.4 7.8 0.3 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2752 PF10825.8 gi|307595535|ref|YP_003901852.1| - 4.4 7.4 4.7 1.5 8.9 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2752) Ribosomal_L2_C PF03947.18 gi|307595536|ref|YP_003901853.1| - 6.4e-42 142.7 1.1 1e-41 142.0 1.1 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|307595536|ref|YP_003901853.1| - 7.3e-14 51.5 0.3 1.8e-13 50.3 0.0 1.8 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain tRNA_int_endo PF01974.17 gi|307595537|ref|YP_003901854.1| - 1.9e-09 37.4 0.0 3.1e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain NSP10 PF09401.10 gi|307595538|ref|YP_003901855.1| - 0.19 11.8 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 RNA synthesis protein NSP10 Radical_SAM PF04055.21 gi|307595539|ref|YP_003901856.1| - 6.3e-12 46.2 0.1 6.1e-11 43.0 0.1 2.2 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|307595539|ref|YP_003901856.1| - 2.8e-07 30.7 0.0 5.2e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|307595539|ref|YP_003901856.1| - 1.1e-05 25.7 0.0 1.8e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rhomboid PF01694.22 gi|307595540|ref|YP_003901857.1| - 4.1e-20 72.3 12.9 4.1e-20 72.3 12.9 1.7 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|307595540|ref|YP_003901857.1| - 0.00046 20.7 0.8 0.00046 20.7 0.8 2.1 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) Romo1 PF10247.9 gi|307595540|ref|YP_003901857.1| - 0.019 15.3 3.4 4 7.9 0.1 2.6 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Sdh_cyt PF01127.22 gi|307595540|ref|YP_003901857.1| - 6.8 6.7 13.2 0.65 10.0 0.5 2.4 2 1 0 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PNGaseA PF12222.8 gi|307595541|ref|YP_003901858.1| - 3.1e-30 105.4 0.4 1.8e-28 99.6 0.4 2.1 1 1 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A DUF4536 PF15055.6 gi|307595543|ref|YP_003901860.1| - 0.54 10.5 0.0 0.54 10.5 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4536) PaREP1 PF05942.11 gi|307595544|ref|YP_003901861.1| - 1.2e-08 34.9 0.6 4.2e-08 33.1 0.6 1.7 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|307595544|ref|YP_003901861.1| - 0.00012 22.2 1.0 0.00019 21.5 1.0 1.3 1 1 0 1 1 1 1 HEPN domain DUF5618 PF18498.1 gi|307595544|ref|YP_003901861.1| - 0.0022 18.2 0.2 0.0034 17.6 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF5618) DUF72 PF01904.18 gi|307595545|ref|YP_003901862.1| - 6.2e-44 150.7 0.3 7.2e-44 150.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Sugar_tr PF00083.24 gi|307595546|ref|YP_003901863.1| - 2.5e-15 56.3 12.6 2.5e-15 56.3 12.6 2.1 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|307595546|ref|YP_003901863.1| - 3e-13 49.4 55.2 3e-13 49.4 55.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily UbiA PF01040.18 gi|307595547|ref|YP_003901864.1| - 6.8e-22 78.0 23.8 6.8e-22 78.0 23.8 1.8 1 1 1 2 2 2 1 UbiA prenyltransferase family UbiD PF01977.16 gi|307595548|ref|YP_003901865.1| - 3.3e-115 385.2 0.0 3.8e-115 385.0 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NAD_binding_2 PF03446.15 gi|307595549|ref|YP_003901866.1| - 5.5e-25 88.4 0.1 8.6e-25 87.7 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|307595549|ref|YP_003901866.1| - 2.5e-11 43.9 0.0 4.4e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|307595549|ref|YP_003901866.1| - 1.4e-06 28.8 0.1 2.8e-06 27.8 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|307595549|ref|YP_003901866.1| - 5.2e-05 22.7 0.1 8.2e-05 22.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|307595549|ref|YP_003901866.1| - 0.00023 21.1 0.4 0.00049 20.0 0.3 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|307595549|ref|YP_003901866.1| - 0.00054 20.2 0.6 0.026 14.8 0.1 2.6 1 1 1 2 2 2 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|307595549|ref|YP_003901866.1| - 0.0027 17.3 0.8 0.012 15.2 0.6 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 gi|307595549|ref|YP_003901866.1| - 0.014 15.0 0.1 0.037 13.6 0.1 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DpaA_N PF16924.5 gi|307595549|ref|YP_003901866.1| - 0.026 14.6 0.0 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain ApbA PF02558.16 gi|307595549|ref|YP_003901866.1| - 0.098 12.3 0.4 0.17 11.6 0.4 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AAA_21 PF13304.6 gi|307595551|ref|YP_003901868.1| - 5.7e-09 36.2 0.0 1.2e-05 25.3 0.0 2.4 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|307595551|ref|YP_003901868.1| - 8.2e-08 32.3 0.1 0.00025 20.9 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|307595551|ref|YP_003901868.1| - 0.00016 21.2 0.1 0.41 10.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|307595551|ref|YP_003901868.1| - 0.031 14.8 0.1 0.079 13.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF2779 PF11074.8 gi|307595551|ref|YP_003901868.1| - 0.047 14.2 0.0 0.086 13.3 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function(DUF2779) DUF2813 PF11398.8 gi|307595551|ref|YP_003901868.1| - 0.13 11.5 3.4 0.55 9.4 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) RmlD_sub_bind PF04321.17 gi|307595552|ref|YP_003901869.1| - 6.5e-57 192.8 0.0 6.8e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|307595552|ref|YP_003901869.1| - 8.6e-19 67.9 0.1 1.2e-18 67.5 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|307595552|ref|YP_003901869.1| - 9e-13 48.3 0.0 1.4e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|307595552|ref|YP_003901869.1| - 8.6e-11 41.5 0.0 1.2e-09 37.7 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|307595552|ref|YP_003901869.1| - 1.5e-06 27.6 0.0 4e-06 26.2 0.0 1.6 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 gi|307595552|ref|YP_003901869.1| - 1.6e-05 24.1 0.0 2.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family PNP_UDP_1 PF01048.20 gi|307595552|ref|YP_003901869.1| - 0.14 11.4 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphorylase superfamily ATPase_2 PF01637.18 gi|307595553|ref|YP_003901870.1| - 2.2e-11 44.1 0.0 3.7e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|307595553|ref|YP_003901870.1| - 6.4e-08 33.2 0.1 1.3e-07 32.1 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|307595553|ref|YP_003901870.1| - 4.3e-07 30.0 0.0 0.0019 18.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|307595553|ref|YP_003901870.1| - 4.4e-05 23.8 0.0 0.00028 21.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|307595553|ref|YP_003901870.1| - 0.0096 16.4 0.0 0.076 13.4 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_IclR PF09339.10 gi|307595553|ref|YP_003901870.1| - 0.088 12.6 0.0 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain Radical_SAM PF04055.21 gi|307595554|ref|YP_003901871.1| - 0.0013 19.2 2.2 0.061 13.7 2.2 2.6 1 1 0 1 1 1 1 Radical SAM superfamily PaREP1 PF05942.11 gi|307595555|ref|YP_003901872.1| - 2.4e-26 91.9 0.2 2.9e-26 91.6 0.2 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family NIR_SIR PF01077.22 gi|307595556|ref|YP_003901873.1| - 4.7e-25 87.9 0.0 5.1e-17 61.8 0.0 2.6 2 1 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|307595556|ref|YP_003901873.1| - 8.7e-15 54.3 0.0 5.6e-06 26.1 0.0 2.7 2 0 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain EamA PF00892.20 gi|307595557|ref|YP_003901874.1| - 5.3e-31 107.6 40.5 2.9e-16 59.9 15.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family CRT-like PF08627.10 gi|307595557|ref|YP_003901874.1| - 5.2e-05 22.4 6.4 5.2e-05 22.4 6.4 1.8 3 0 0 3 3 3 1 CRT-like, chloroquine-resistance transporter-like Fer4 PF00037.27 gi|307595558|ref|YP_003901875.1| - 2.5e-10 39.7 13.5 2.9e-08 33.2 4.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|307595558|ref|YP_003901875.1| - 8.4e-09 36.2 1.7 0.00015 22.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|307595558|ref|YP_003901875.1| - 1.7e-08 34.9 6.1 4.4e-08 33.6 6.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307595558|ref|YP_003901875.1| - 5.9e-08 32.7 7.0 8.5e-08 32.2 7.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307595558|ref|YP_003901875.1| - 6.5e-08 32.3 3.2 6.5e-08 32.3 3.2 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307595558|ref|YP_003901875.1| - 8.2e-07 28.8 2.5 8.2e-07 28.8 2.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307595558|ref|YP_003901875.1| - 1.1e-06 28.7 6.3 2.1e-06 27.8 6.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307595558|ref|YP_003901875.1| - 3.4e-06 27.1 8.3 1.2e-05 25.3 8.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307595558|ref|YP_003901875.1| - 4.6e-05 23.9 8.5 0.0054 17.2 1.1 2.3 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307595558|ref|YP_003901875.1| - 0.00013 22.2 3.8 0.00013 22.2 3.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307595558|ref|YP_003901875.1| - 0.00016 22.4 16.0 0.0012 19.6 6.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|307595558|ref|YP_003901875.1| - 0.00091 20.0 0.7 0.0057 17.5 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307595558|ref|YP_003901875.1| - 0.0012 19.6 10.2 0.035 14.8 10.2 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|307595558|ref|YP_003901875.1| - 0.0033 17.8 8.2 0.026 15.0 2.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|307595558|ref|YP_003901875.1| - 0.013 15.6 0.4 0.013 15.6 0.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|307595558|ref|YP_003901875.1| - 0.05 13.7 2.1 0.083 13.0 2.1 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307595558|ref|YP_003901875.1| - 0.062 13.8 11.8 2.7 8.6 11.8 2.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Nitrate_red_del PF02613.15 gi|307595559|ref|YP_003901876.1| - 8.7e-07 29.0 0.0 1.2e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit PPP4R2 PF09184.11 gi|307595559|ref|YP_003901876.1| - 0.0024 17.5 0.6 0.003 17.2 0.6 1.1 1 0 0 1 1 1 1 PPP4R2 Qua1 PF16274.5 gi|307595559|ref|YP_003901876.1| - 0.079 12.8 0.2 0.3 11.0 0.0 2.0 1 1 1 2 2 2 0 Qua1 domain Fer4_11 PF13247.6 gi|307595560|ref|YP_003901877.1| - 1.7e-37 127.6 5.7 1.7e-37 127.6 5.7 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Nitr_red_bet_C PF14711.6 gi|307595560|ref|YP_003901877.1| - 2.8e-26 91.0 0.0 4.7e-26 90.3 0.0 1.4 1 0 0 1 1 1 1 Respiratory nitrate reductase beta C-terminal Fer4_10 PF13237.6 gi|307595560|ref|YP_003901877.1| - 3.6e-09 36.6 15.3 1.7e-06 28.0 3.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307595560|ref|YP_003901877.1| - 1.2e-07 31.5 18.8 0.0065 16.5 0.1 4.0 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307595560|ref|YP_003901877.1| - 2.3e-07 31.3 20.5 0.00085 19.9 7.8 3.5 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307595560|ref|YP_003901877.1| - 0.00012 22.4 17.9 0.066 13.7 1.1 3.7 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4 PF00037.27 gi|307595560|ref|YP_003901877.1| - 0.00019 21.1 20.9 0.03 14.1 2.3 4.7 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307595560|ref|YP_003901877.1| - 0.00028 21.0 19.7 0.0017 18.5 4.3 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307595560|ref|YP_003901877.1| - 0.0018 18.2 28.7 0.028 14.5 2.3 4.0 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_13 PF13370.6 gi|307595560|ref|YP_003901877.1| - 0.03 14.9 7.8 0.1 13.1 0.2 3.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|307595560|ref|YP_003901877.1| - 0.24 11.6 23.9 0.1 12.7 2.8 3.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307595560|ref|YP_003901877.1| - 0.45 11.1 18.9 2.1 9.0 0.9 3.8 3 1 0 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|307595561|ref|YP_003901878.1| - 5.3e-152 506.7 0.0 6.4e-152 506.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|307595561|ref|YP_003901878.1| - 2.7e-22 78.9 0.5 5.5e-22 77.9 0.5 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Nitr_red_alph_N PF14710.6 gi|307595561|ref|YP_003901878.1| - 1.4e-08 35.1 4.1 3.5e-08 33.8 4.1 1.7 1 0 0 1 1 1 1 Respiratory nitrate reductase alpha N-terminal Molybdop_Fe4S4 PF04879.16 gi|307595561|ref|YP_003901878.1| - 0.00034 20.5 0.1 0.0016 18.4 0.1 2.1 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Nitrate_red_gam PF02665.14 gi|307595562|ref|YP_003901879.1| - 3.6e-79 265.3 17.2 4.3e-79 265.1 17.2 1.0 1 0 0 1 1 1 1 Nitrate reductase gamma subunit MFS_1 PF07690.16 gi|307595563|ref|YP_003901880.1| - 3.5e-33 115.0 72.3 2.4e-18 66.2 40.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily P5-ATPase PF12409.8 gi|307595563|ref|YP_003901880.1| - 0.061 13.4 1.6 0.23 11.6 1.3 2.1 2 0 0 2 2 2 0 P5-type ATPase cation transporter 7tm_1 PF00001.21 gi|307595563|ref|YP_003901880.1| - 0.32 10.3 3.9 4.3 6.6 0.5 2.6 1 1 1 2 2 2 0 7 transmembrane receptor (rhodopsin family) Gram_pos_anchor PF00746.21 gi|307595563|ref|YP_003901880.1| - 0.58 10.2 0.0 0.58 10.2 0.0 5.2 6 0 0 6 6 6 0 LPXTG cell wall anchor motif Hemerythrin PF01814.23 gi|307595564|ref|YP_003901881.1| - 4.2e-16 59.8 0.1 6e-16 59.3 0.1 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain CdiI_4 PF18624.1 gi|307595564|ref|YP_003901881.1| - 0.1 13.1 0.0 0.22 12.0 0.0 1.6 1 1 0 1 1 1 0 CDI immunity protein DUF2250 PF10007.9 gi|307595565|ref|YP_003901882.1| - 3.1e-34 117.0 0.3 3.7e-34 116.7 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|307595565|ref|YP_003901882.1| - 6.5e-05 22.7 0.1 9.9e-05 22.2 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|307595565|ref|YP_003901882.1| - 0.00061 19.5 0.0 0.00076 19.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|307595565|ref|YP_003901882.1| - 0.00068 19.9 0.2 0.0011 19.3 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|307595565|ref|YP_003901882.1| - 0.0016 18.3 0.0 0.0099 15.7 0.0 2.1 1 1 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|307595565|ref|YP_003901882.1| - 0.023 14.8 0.2 0.035 14.2 0.2 1.4 1 1 0 1 1 1 0 DprA winged helix domain MarR PF01047.22 gi|307595565|ref|YP_003901882.1| - 0.031 14.2 0.0 0.34 10.9 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|307595565|ref|YP_003901882.1| - 0.045 13.8 0.4 0.092 12.8 0.1 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain PAPS_reduct PF01507.19 gi|307595565|ref|YP_003901882.1| - 0.046 13.8 0.0 0.051 13.6 0.0 1.1 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family HTH_24 PF13412.6 gi|307595565|ref|YP_003901882.1| - 0.051 13.1 0.1 0.13 11.8 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding BLACT_WH PF17778.1 gi|307595565|ref|YP_003901882.1| - 0.19 11.7 0.2 0.19 11.7 0.2 1.7 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain PaREP1 PF05942.11 gi|307595566|ref|YP_003901883.1| - 6.2e-25 87.4 0.7 7.6e-25 87.1 0.7 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family TrmO PF01980.16 gi|307595567|ref|YP_003901884.1| - 3.1e-29 101.6 0.0 4.2e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 tRNA-methyltransferase O DUF3809 PF12723.7 gi|307595568|ref|YP_003901885.1| - 0.0046 17.2 0.1 1.1 9.5 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3809) VWA_3_C PF18571.1 gi|307595568|ref|YP_003901885.1| - 0.1 12.5 1.3 10 6.1 0.1 3.0 2 1 1 3 3 3 0 von Willebrand factor type A C-terminal domain Keratin_2_head PF16208.5 gi|307595568|ref|YP_003901885.1| - 0.15 12.2 0.1 0.17 12.0 0.1 1.1 1 0 0 1 1 1 0 Keratin type II head HTH_10 PF04967.12 gi|307595569|ref|YP_003901886.1| - 7.3e-17 60.9 0.2 1.6e-16 59.8 0.2 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|307595569|ref|YP_003901886.1| - 2.9e-08 33.1 0.2 2.9e-08 33.1 0.2 1.7 2 0 0 2 2 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|307595569|ref|YP_003901886.1| - 0.00017 21.4 0.0 0.081 12.8 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|307595569|ref|YP_003901886.1| - 0.00026 20.5 0.1 0.00095 18.7 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|307595569|ref|YP_003901886.1| - 0.00039 20.2 0.0 0.0013 18.4 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|307595569|ref|YP_003901886.1| - 0.0011 18.9 0.1 0.0021 17.9 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|307595569|ref|YP_003901886.1| - 0.0058 16.6 1.2 0.091 12.8 0.0 3.0 4 0 0 4 4 4 1 Crp-like helix-turn-helix domain HTH_Mga PF08280.11 gi|307595569|ref|YP_003901886.1| - 0.0075 16.3 0.3 0.02 14.9 0.3 1.8 1 1 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_26 PF13443.6 gi|307595569|ref|YP_003901886.1| - 0.0099 16.3 0.0 0.021 15.3 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain LacI PF00356.21 gi|307595569|ref|YP_003901886.1| - 0.014 15.1 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Sigma70_r3 PF04539.16 gi|307595569|ref|YP_003901886.1| - 0.016 15.3 0.0 0.039 14.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 Sigma70_r4_2 PF08281.12 gi|307595569|ref|YP_003901886.1| - 0.021 14.5 0.4 0.062 13.0 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 Mga PF05043.13 gi|307595569|ref|YP_003901886.1| - 0.037 14.6 0.0 0.082 13.5 0.0 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_20 PF12840.7 gi|307595569|ref|YP_003901886.1| - 0.042 13.9 1.2 4.1 7.5 0.1 3.3 2 2 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|307595569|ref|YP_003901886.1| - 0.053 13.4 0.8 0.38 10.6 0.0 2.7 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family HTH_3 PF01381.22 gi|307595569|ref|YP_003901886.1| - 0.055 13.5 0.1 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix DUF2228 PF10228.9 gi|307595569|ref|YP_003901886.1| - 0.056 13.2 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2228) Fe_dep_repress PF01325.19 gi|307595569|ref|YP_003901886.1| - 0.06 13.6 0.0 0.25 11.6 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_17 PF12728.7 gi|307595569|ref|YP_003901886.1| - 0.08 13.1 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|307595569|ref|YP_003901886.1| - 0.081 12.7 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|307595569|ref|YP_003901886.1| - 0.087 12.8 0.1 0.52 10.3 0.0 2.3 2 0 0 2 2 2 0 HTH domain GerE PF00196.19 gi|307595569|ref|YP_003901886.1| - 0.11 12.0 0.4 0.38 10.3 0.4 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_AraC PF00165.23 gi|307595569|ref|YP_003901886.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_8 PF02954.19 gi|307595569|ref|YP_003901886.1| - 0.14 12.0 1.1 1 9.2 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family DUF488 PF04343.13 gi|307595570|ref|YP_003901887.1| - 2.9e-30 105.4 0.2 3.3e-30 105.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 COX1 PF00115.20 gi|307595571|ref|YP_003901888.1| - 1.2e-32 113.3 55.4 1.2e-32 113.3 55.4 2.6 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I GWT1 PF06423.12 gi|307595571|ref|YP_003901888.1| - 0.035 14.2 3.0 0.1 12.7 0.0 2.8 2 0 0 2 2 2 0 GWT1 MerE PF05052.12 gi|307595571|ref|YP_003901888.1| - 0.087 12.8 0.1 0.087 12.8 0.1 3.0 3 1 1 4 4 4 0 MerE protein PaREP1 PF05942.11 gi|307595572|ref|YP_003901889.1| - 1.1e-18 67.3 0.3 1.4e-18 66.9 0.3 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF3323 PF11796.8 gi|307595572|ref|YP_003901889.1| - 0.03 14.2 0.3 0.056 13.3 0.3 1.4 2 0 0 2 2 2 0 Protein of unknown function N-terminus (DUF3323) POR_N PF01855.19 gi|307595574|ref|YP_003901891.1| - 1.6e-61 208.0 0.0 2.5e-61 207.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|307595574|ref|YP_003901891.1| - 3.5e-35 121.7 0.0 1.1e-34 120.1 0.0 1.8 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|307595574|ref|YP_003901891.1| - 1.7e-09 37.9 0.1 4.5e-09 36.5 0.1 1.8 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|307595574|ref|YP_003901891.1| - 3.2e-05 23.8 0.0 7.6e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|307595574|ref|YP_003901891.1| - 3.8e-05 23.4 0.0 0.00013 21.6 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|307595575|ref|YP_003901892.1| - 3e-28 98.5 0.2 5.5e-28 97.7 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|307595575|ref|YP_003901892.1| - 4.7e-19 68.3 0.1 9.3e-19 67.3 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal ATPase PF06745.13 gi|307595576|ref|YP_003901893.1| - 1.3e-64 217.7 0.1 1.4e-64 217.6 0.1 1.0 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|307595576|ref|YP_003901893.1| - 0.00022 20.8 0.0 0.00045 19.8 0.0 1.5 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|307595576|ref|YP_003901893.1| - 0.00055 19.6 0.0 0.001 18.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|307595576|ref|YP_003901893.1| - 0.0016 17.1 0.7 0.0046 15.6 0.7 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein DEAD PF00270.29 gi|307595576|ref|YP_003901893.1| - 0.0067 16.2 0.0 0.0089 15.8 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DnaB_C PF03796.15 gi|307595576|ref|YP_003901893.1| - 0.0072 15.7 0.0 0.0094 15.3 0.0 1.3 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain Rad51 PF08423.11 gi|307595576|ref|YP_003901893.1| - 0.019 14.3 0.1 0.029 13.6 0.1 1.2 1 0 0 1 1 1 0 Rad51 ResIII PF04851.15 gi|307595576|ref|YP_003901893.1| - 0.03 14.3 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PAXNEB PF05625.11 gi|307595576|ref|YP_003901893.1| - 0.056 12.6 0.2 0.079 12.1 0.2 1.2 1 0 0 1 1 1 0 PAXNEB protein DUF2075 PF09848.9 gi|307595576|ref|YP_003901893.1| - 0.11 11.7 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|307595576|ref|YP_003901893.1| - 0.16 12.4 0.0 0.22 11.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|307595576|ref|YP_003901893.1| - 0.17 12.1 0.4 1 9.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain ADH_N PF08240.12 gi|307595577|ref|YP_003901894.1| - 2.9e-31 107.6 0.0 5.4e-31 106.7 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|307595577|ref|YP_003901894.1| - 2e-26 92.5 0.0 2.8e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|307595577|ref|YP_003901894.1| - 9.1e-07 28.6 0.0 1.3e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|307595577|ref|YP_003901894.1| - 1.6e-06 29.2 0.0 2.7e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|307595577|ref|YP_003901894.1| - 9e-05 22.3 1.1 0.0002 21.2 1.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Shikimate_DH PF01488.20 gi|307595577|ref|YP_003901894.1| - 0.00016 21.7 0.0 0.00027 21.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|307595577|ref|YP_003901894.1| - 0.00016 21.1 0.1 0.0017 17.8 0.1 2.0 2 0 0 2 2 2 1 ThiF family TrkA_N PF02254.18 gi|307595577|ref|YP_003901894.1| - 0.00022 21.4 0.1 0.00038 20.7 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|307595577|ref|YP_003901894.1| - 0.00052 20.3 0.1 0.0014 18.9 0.0 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|307595577|ref|YP_003901894.1| - 0.0013 19.4 0.0 0.002 18.7 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|307595577|ref|YP_003901894.1| - 0.0064 15.8 0.0 0.0097 15.2 0.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|307595577|ref|YP_003901894.1| - 0.012 14.9 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain MR_MLE_C PF13378.6 gi|307595578|ref|YP_003901895.1| - 7.4e-44 149.9 0.0 9.7e-44 149.5 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|307595578|ref|YP_003901895.1| - 1.3e-12 47.9 0.0 2.3e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ADH_N PF08240.12 gi|307595580|ref|YP_003901897.1| - 6.3e-26 90.4 0.1 1.1e-25 89.6 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|307595580|ref|YP_003901897.1| - 3.8e-20 72.2 0.0 1e-19 70.8 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|307595580|ref|YP_003901897.1| - 5.2e-08 34.0 0.0 1.2e-07 32.8 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|307595580|ref|YP_003901897.1| - 0.019 15.2 0.0 0.055 13.7 0.0 1.8 1 1 0 1 1 1 0 TrkA-N domain OB_aCoA_assoc PF01796.17 gi|307595580|ref|YP_003901897.1| - 1.5 8.9 3.9 4.4 7.4 0.0 3.3 4 0 0 4 4 4 0 DUF35 OB-fold domain, acyl-CoA-associated Sugar_tr PF00083.24 gi|307595581|ref|YP_003901898.1| - 1.3e-38 133.0 34.9 1.6e-38 132.7 34.9 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|307595581|ref|YP_003901898.1| - 3e-29 102.1 47.7 3e-29 102.1 47.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily HTH_10 PF04967.12 gi|307595582|ref|YP_003901899.1| - 2.1e-16 59.4 0.0 5.8e-16 58.0 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_22 PF13309.6 gi|307595582|ref|YP_003901899.1| - 0.00061 19.8 0.0 0.0014 18.6 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|307595582|ref|YP_003901899.1| - 0.0013 18.2 1.1 0.0041 16.7 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|307595582|ref|YP_003901899.1| - 0.0016 18.4 0.3 0.011 15.7 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.11 gi|307595582|ref|YP_003901899.1| - 0.0027 17.7 0.1 0.006 16.6 0.1 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_3 PF01381.22 gi|307595582|ref|YP_003901899.1| - 0.0039 17.2 0.1 0.011 15.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_5 PF01022.20 gi|307595582|ref|YP_003901899.1| - 0.005 16.7 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|307595582|ref|YP_003901899.1| - 0.0079 16.1 0.1 4.6 7.3 0.0 2.9 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain Mga PF05043.13 gi|307595582|ref|YP_003901899.1| - 0.016 15.8 0.2 0.038 14.6 0.2 1.7 1 1 0 1 1 1 0 Mga helix-turn-helix domain HTH_IclR PF09339.10 gi|307595582|ref|YP_003901899.1| - 0.023 14.5 0.0 0.077 12.8 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|307595582|ref|YP_003901899.1| - 0.025 14.4 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain PCI PF01399.27 gi|307595582|ref|YP_003901899.1| - 0.041 14.4 0.3 0.11 13.0 0.2 1.7 2 0 0 2 2 2 0 PCI domain MerR_1 PF13411.6 gi|307595582|ref|YP_003901899.1| - 0.069 13.2 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_36 PF13730.6 gi|307595582|ref|YP_003901899.1| - 0.089 12.8 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_AlpA PF05930.12 gi|307595582|ref|YP_003901899.1| - 0.094 12.6 0.0 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Prophage CP4-57 regulatory protein (AlpA) MarR_2 PF12802.7 gi|307595582|ref|YP_003901899.1| - 0.11 12.4 0.0 0.69 9.9 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_50 PF18024.1 gi|307595582|ref|YP_003901899.1| - 0.12 12.0 0.1 8.4 6.1 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|307595582|ref|YP_003901899.1| - 0.17 12.4 0.1 0.46 11.0 0.1 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_AsnC-type PF13404.6 gi|307595582|ref|YP_003901899.1| - 0.2 11.5 0.6 0.6 10.0 0.0 2.1 3 0 0 3 3 2 0 AsnC-type helix-turn-helix domain Inos-1-P_synth PF01658.17 gi|307595583|ref|YP_003901900.1| - 1.4e-21 76.8 0.0 3.2e-21 75.6 0.0 1.6 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|307595583|ref|YP_003901900.1| - 0.008 15.6 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase DUF3185 PF11381.8 gi|307595584|ref|YP_003901901.1| - 0.00028 20.8 2.7 0.00028 20.8 2.7 2.6 3 0 0 3 3 3 2 Protein of unknown function (DUF3185) CRPA PF05745.11 gi|307595584|ref|YP_003901901.1| - 0.017 15.1 3.9 0.048 13.7 0.2 2.3 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) Tetraspanin PF00335.20 gi|307595584|ref|YP_003901901.1| - 0.16 11.6 4.2 4.4 6.9 0.2 2.1 2 0 0 2 2 2 0 Tetraspanin family PorA PF11271.8 gi|307595584|ref|YP_003901901.1| - 1.7 7.8 5.9 11 5.1 2.5 2.1 2 0 0 2 2 2 0 Porin PorA SHR3_chaperone PF08229.11 gi|307595584|ref|YP_003901901.1| - 1.8 7.5 4.7 2.7 6.9 1.6 2.0 2 0 0 2 2 2 0 ER membrane protein SH3 DUF3040 PF11239.8 gi|307595584|ref|YP_003901901.1| - 7.1 7.0 9.8 9.1 6.6 0.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) DUF202 PF02656.15 gi|307595584|ref|YP_003901901.1| - 8.2 7.0 6.5 13 6.3 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF872 PF05915.12 gi|307595584|ref|YP_003901901.1| - 9.5 6.4 10.5 11 6.2 2.6 2.5 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Thymidylate_kin PF02223.17 gi|307595585|ref|YP_003901902.1| - 3e-45 154.2 0.0 3.3e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|307595585|ref|YP_003901902.1| - 7.7e-06 26.5 0.0 0.0019 18.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain dNK PF01712.19 gi|307595585|ref|YP_003901902.1| - 2.9e-05 24.0 0.1 0.0028 17.5 0.1 2.2 1 1 0 1 1 1 1 Deoxynucleoside kinase MeaB PF03308.16 gi|307595585|ref|YP_003901902.1| - 0.00067 18.7 0.0 0.00086 18.4 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|307595585|ref|YP_003901902.1| - 0.0016 18.4 0.1 0.02 14.8 0.0 2.1 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.6 gi|307595585|ref|YP_003901902.1| - 0.002 17.9 0.0 0.0025 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307595585|ref|YP_003901902.1| - 0.0048 17.3 0.0 0.0052 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.6 gi|307595585|ref|YP_003901902.1| - 0.016 15.6 0.0 1.1 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|307595585|ref|YP_003901902.1| - 0.023 15.0 0.0 0.029 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|307595585|ref|YP_003901902.1| - 0.025 14.9 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Ploopntkinase1 PF18748.1 gi|307595585|ref|YP_003901902.1| - 0.043 13.3 0.0 0.72 9.3 0.0 2.0 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 MMR_HSR1 PF01926.23 gi|307595585|ref|YP_003901902.1| - 0.059 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase APS_kinase PF01583.20 gi|307595585|ref|YP_003901902.1| - 0.062 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase ABC_tran PF00005.27 gi|307595585|ref|YP_003901902.1| - 0.094 13.2 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 ABC transporter PPK2 PF03976.14 gi|307595585|ref|YP_003901902.1| - 0.15 11.5 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) CbiA PF01656.23 gi|307595585|ref|YP_003901902.1| - 0.17 12.0 0.1 0.42 10.7 0.0 1.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MoaC PF01967.21 gi|307595586|ref|YP_003901903.1| - 2.6e-62 208.9 2.4 3.8e-35 120.9 0.4 2.1 2 0 0 2 2 2 2 MoaC family NTP_transferase PF00483.23 gi|307595587|ref|YP_003901904.1| - 1.5e-35 123.0 0.0 1.8e-35 122.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|307595587|ref|YP_003901904.1| - 8.8e-14 52.2 0.0 1.7e-13 51.2 0.0 1.4 1 1 0 2 2 2 1 MobA-like NTP transferase domain IspD PF01128.19 gi|307595587|ref|YP_003901904.1| - 2.6e-05 24.1 0.0 5.4e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.6 gi|307595587|ref|YP_003901904.1| - 0.045 13.6 0.1 0.084 12.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) DHBP_synthase PF00926.19 gi|307595588|ref|YP_003901905.1| - 3.8e-48 163.6 0.0 4.4e-48 163.3 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Cren7 PF11520.8 gi|307595589|ref|YP_003901906.1| - 1.8e-13 50.2 1.5 2.4e-13 49.8 1.5 1.2 1 0 0 1 1 1 1 Chromatin protein Cren7 RsgA_GTPase PF03193.16 gi|307595590|ref|YP_003901907.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 RsgA GTPase Radical_SAM PF04055.21 gi|307595591|ref|YP_003901908.1| - 4.8e-13 49.8 0.1 1e-12 48.7 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|307595591|ref|YP_003901908.1| - 0.00012 22.4 0.0 0.00022 21.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|307595591|ref|YP_003901908.1| - 0.01 15.9 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain RecG_wedge PF17191.4 gi|307595591|ref|YP_003901908.1| - 0.12 12.0 0.1 0.34 10.5 0.0 1.6 1 1 0 1 1 1 0 RecG wedge domain DUF1512 PF07431.12 gi|307595592|ref|YP_003901909.1| - 3.1e-132 440.9 1.0 3.6e-132 440.7 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) SSPI PF14098.6 gi|307595592|ref|YP_003901909.1| - 0.024 14.8 0.7 0.064 13.4 0.1 2.0 2 0 0 2 2 2 0 Small, acid-soluble spore protein I EzrA PF06160.12 gi|307595593|ref|YP_003901910.1| - 0.032 12.4 0.2 0.037 12.2 0.2 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA SP_C-Propep PF08999.10 gi|307595593|ref|YP_003901910.1| - 0.032 14.0 0.1 0.051 13.4 0.1 1.3 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide tRNA-synt_2 PF00152.20 gi|307595594|ref|YP_003901911.1| - 1.3e-89 300.4 0.0 1.6e-89 300.1 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|307595594|ref|YP_003901911.1| - 5e-12 45.6 0.1 9.2e-12 44.8 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|307595594|ref|YP_003901911.1| - 0.004 16.7 0.1 0.067 12.7 0.0 2.6 2 1 0 2 2 2 1 tRNA synthetases class II core domain (F) BOF PF04076.13 gi|307595594|ref|YP_003901911.1| - 0.027 14.6 0.0 0.039 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial OB fold (BOF) protein FGFR3_TM PF18123.1 gi|307595594|ref|YP_003901911.1| - 0.073 12.6 0.1 0.14 11.7 0.1 1.5 1 0 0 1 1 1 0 Fibroblast growth factor receptor 3 transmembrane domain AAA_18 PF13238.6 gi|307595595|ref|YP_003901912.1| - 9.9e-15 55.2 0.0 1.5e-14 54.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|307595595|ref|YP_003901912.1| - 0.00018 21.3 0.1 0.00032 20.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain SKI PF01202.22 gi|307595595|ref|YP_003901912.1| - 0.00065 19.9 0.0 0.0024 18.0 0.0 1.8 1 1 0 1 1 1 1 Shikimate kinase Hydin_ADK PF17213.3 gi|307595595|ref|YP_003901912.1| - 0.0009 19.6 0.0 0.0013 19.0 0.0 1.2 1 0 0 1 1 1 1 Hydin Adenylate kinase-like domain AAA_33 PF13671.6 gi|307595595|ref|YP_003901912.1| - 0.0012 19.1 0.0 0.0018 18.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|307595595|ref|YP_003901912.1| - 0.0038 17.1 0.2 0.0082 16.1 0.2 1.6 1 1 0 1 1 1 1 NTPase KTI12 PF08433.10 gi|307595595|ref|YP_003901912.1| - 0.0045 16.5 0.0 0.01 15.3 0.0 1.7 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_17 PF13207.6 gi|307595595|ref|YP_003901912.1| - 0.0051 17.2 0.0 0.078 13.4 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|307595595|ref|YP_003901912.1| - 0.0072 16.3 0.1 0.019 15.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|307595595|ref|YP_003901912.1| - 0.0078 16.6 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|307595595|ref|YP_003901912.1| - 0.019 15.0 0.0 0.024 14.7 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 gi|307595595|ref|YP_003901912.1| - 0.022 15.1 0.3 0.051 14.0 0.3 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|307595595|ref|YP_003901912.1| - 0.026 14.8 0.0 0.061 13.6 0.0 1.8 1 1 1 2 2 2 0 AAA domain Rad17 PF03215.15 gi|307595595|ref|YP_003901912.1| - 0.029 14.3 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|307595595|ref|YP_003901912.1| - 0.034 14.4 0.2 0.071 13.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|307595595|ref|YP_003901912.1| - 0.044 14.1 0.0 0.082 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|307595595|ref|YP_003901912.1| - 0.062 13.0 0.0 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|307595595|ref|YP_003901912.1| - 0.13 11.8 0.1 0.25 10.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|307595595|ref|YP_003901912.1| - 0.19 11.1 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CitMHS PF03600.16 gi|307595597|ref|YP_003901914.1| - 1.3e-39 136.2 26.7 1.3e-38 133.0 26.7 2.0 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.15 gi|307595597|ref|YP_003901914.1| - 1.7e-13 50.8 22.1 2.2e-13 50.4 22.1 1.1 1 0 0 1 1 1 1 Arsenical pump membrane protein DUF3397 PF11877.8 gi|307595597|ref|YP_003901914.1| - 0.022 15.0 0.1 0.022 15.0 0.1 4.0 3 2 1 4 4 4 0 Protein of unknown function (DUF3397) CobS PF02654.15 gi|307595598|ref|YP_003901915.1| - 5.7e-33 114.8 16.2 6.7e-33 114.6 16.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase SUR7 PF06687.12 gi|307595598|ref|YP_003901915.1| - 0.091 12.4 9.7 0.012 15.2 5.7 1.6 2 0 0 2 2 2 0 SUR7/PalI family DUF3267 PF11667.8 gi|307595598|ref|YP_003901915.1| - 4.2 7.7 17.6 0.23 11.7 6.2 2.8 2 1 1 3 3 3 0 Putative zincin peptidase Phosphorylase PF00343.20 gi|307595599|ref|YP_003901916.1| - 9e-16 57.3 0.0 1.9e-14 53.0 0.0 2.6 1 1 1 2 2 2 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|307595599|ref|YP_003901916.1| - 3.4e-07 30.0 0.0 8.4e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307595599|ref|YP_003901916.1| - 0.00017 22.0 0.0 0.00077 19.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307595599|ref|YP_003901916.1| - 0.0054 16.7 0.1 0.15 12.0 0.1 2.7 3 0 0 3 3 3 1 Glycosyltransferase Family 4 zf-C2H2_4 PF13894.6 gi|307595600|ref|YP_003901917.1| - 2.8e-07 30.8 5.5 0.002 18.8 0.1 2.6 3 0 0 3 3 2 2 C2H2-type zinc finger zf-C2H2_9 PF16293.5 gi|307595600|ref|YP_003901917.1| - 2e-05 24.3 1.7 0.027 14.3 0.1 2.1 2 0 0 2 2 2 2 C2H2 type zinc-finger (1 copy) zf-C2H2 PF00096.26 gi|307595600|ref|YP_003901917.1| - 0.00064 20.0 11.1 0.0013 19.1 0.2 2.8 4 0 0 4 4 3 2 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|307595600|ref|YP_003901917.1| - 0.0009 19.5 1.5 0.0013 19.0 1.5 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_2 PF12756.7 gi|307595600|ref|YP_003901917.1| - 0.0013 19.0 1.2 0.17 12.2 0.3 2.1 1 1 1 2 2 2 1 C2H2 type zinc-finger (2 copies) Zn-ribbon_8 PF09723.10 gi|307595600|ref|YP_003901917.1| - 0.0023 18.0 1.6 0.0079 16.3 1.6 1.9 1 1 0 1 1 1 1 Zinc ribbon domain zf-C2HC_2 PF13913.6 gi|307595600|ref|YP_003901917.1| - 0.0028 17.5 3.2 0.13 12.2 0.1 2.4 2 0 0 2 2 2 1 zinc-finger of a C2HC-type zf-C2HE PF16278.5 gi|307595600|ref|YP_003901917.1| - 0.0078 16.6 2.2 1.9 9.0 0.5 2.1 2 0 0 2 2 2 2 C2HE / C2H2 / C2HC zinc-binding finger ADK_lid PF05191.14 gi|307595600|ref|YP_003901917.1| - 0.0078 16.2 1.5 0.031 14.2 1.4 1.8 1 1 1 2 2 2 1 Adenylate kinase, active site lid zf_CopZ PF18423.1 gi|307595600|ref|YP_003901917.1| - 0.0092 15.9 0.1 0.041 13.8 0.0 1.9 2 0 0 2 2 2 1 Zinc binding domain TF_Zn_Ribbon PF08271.12 gi|307595600|ref|YP_003901917.1| - 0.017 14.6 0.8 0.38 10.3 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C2H2_6 PF13912.6 gi|307595600|ref|YP_003901917.1| - 0.018 15.0 0.2 0.018 15.0 0.2 3.1 2 2 0 2 2 2 0 C2H2-type zinc finger zf_ZIC PF18366.1 gi|307595600|ref|YP_003901917.1| - 0.021 14.9 0.4 0.044 13.9 0.1 1.7 1 1 1 2 2 2 0 Zic proteins zinc finger domain PHF5 PF03660.14 gi|307595600|ref|YP_003901917.1| - 0.035 14.3 0.3 0.039 14.2 0.3 1.1 1 0 0 1 1 1 0 PHF5-like protein zf-C2H2_jaz PF12171.8 gi|307595600|ref|YP_003901917.1| - 0.046 14.0 1.6 1.3 9.4 0.2 2.6 2 1 0 2 2 2 0 Zinc-finger double-stranded RNA-binding zf-RRN7 PF11781.8 gi|307595600|ref|YP_003901917.1| - 0.07 12.8 1.0 0.55 10.0 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin PF00301.20 gi|307595600|ref|YP_003901917.1| - 0.09 12.8 0.9 0.54 10.3 0.9 1.9 1 1 0 1 1 1 0 Rubredoxin zf-C2H2_3 PF13878.6 gi|307595600|ref|YP_003901917.1| - 0.26 11.1 1.7 3.3 7.6 0.2 2.5 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Rad50_zn_hook PF04423.14 gi|307595600|ref|YP_003901917.1| - 0.29 11.0 6.7 2.5 8.0 1.9 2.4 1 1 1 2 2 2 0 Rad50 zinc hook motif YhfH PF14149.6 gi|307595600|ref|YP_003901917.1| - 0.34 10.9 2.6 8.4 6.5 0.0 2.6 2 1 1 3 3 3 0 YhfH-like protein FYVE PF01363.21 gi|307595600|ref|YP_003901917.1| - 0.73 10.0 5.7 4.2 7.6 1.7 2.2 1 1 1 2 2 2 0 FYVE zinc finger Zn_Tnp_IS1595 PF12760.7 gi|307595600|ref|YP_003901917.1| - 0.92 9.5 5.5 0.31 11.0 1.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_11 PF16622.5 gi|307595600|ref|YP_003901917.1| - 1.1 9.0 8.3 1.9 8.3 1.3 2.5 3 0 0 3 3 3 0 zinc-finger C2H2-type DUF763 PF05559.11 gi|307595602|ref|YP_003901919.1| - 2.9e-117 391.3 0.0 3.5e-117 391.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Methyltransf_19 PF04672.12 gi|307595602|ref|YP_003901919.1| - 0.05 13.1 0.1 0.085 12.3 0.1 1.3 1 0 0 1 1 1 0 S-adenosyl methyltransferase Acyl-CoA_dh_1 PF00441.24 gi|307595603|ref|YP_003901920.1| - 1e-37 129.6 1.5 1.5e-37 129.1 1.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|307595603|ref|YP_003901920.1| - 1.2e-19 71.0 0.1 4.4e-19 69.2 0.0 2.1 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|307595603|ref|YP_003901920.1| - 1.1e-18 67.8 0.1 1.7e-18 67.2 0.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|307595603|ref|YP_003901920.1| - 4.5e-14 52.4 0.1 8.3e-14 51.6 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DUF973 PF06157.11 gi|307595605|ref|YP_003901922.1| - 1.9 7.5 13.4 2.6 7.0 13.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Peptidase_M28 PF04389.17 gi|307595608|ref|YP_003901925.1| - 7.7e-16 58.4 0.1 9.8e-15 54.8 0.1 2.1 1 1 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|307595608|ref|YP_003901925.1| - 0.00034 20.6 0.0 0.00059 19.8 0.0 1.4 1 0 0 1 1 1 1 PA domain DUF1852 PF08908.11 gi|307595608|ref|YP_003901925.1| - 0.00071 18.7 0.3 0.0011 18.0 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1852) CEP170_C PF15308.6 gi|307595608|ref|YP_003901925.1| - 0.11 11.0 0.1 0.15 10.6 0.1 1.1 1 0 0 1 1 1 0 CEP170 C-terminus CTP_transf_like PF01467.26 gi|307595609|ref|YP_003901926.1| - 1.7e-14 54.2 0.0 2.2e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|307595609|ref|YP_003901926.1| - 0.017 15.0 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase PhoU PF01895.19 gi|307595610|ref|YP_003901927.1| - 4.7e-11 43.0 2.1 4.7e-11 43.0 2.1 2.5 2 1 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|307595610|ref|YP_003901927.1| - 1.7e-06 27.8 1.0 4.8e-06 26.4 1.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin GAT PF03127.14 gi|307595610|ref|YP_003901927.1| - 0.013 15.8 1.5 0.013 15.8 1.5 1.9 2 0 0 2 2 2 0 GAT domain Synaptonemal_3 PF15191.6 gi|307595610|ref|YP_003901927.1| - 0.12 12.2 0.1 0.12 12.2 0.1 2.1 3 0 0 3 3 3 0 Synaptonemal complex central element protein 3 Mer2 PF09074.10 gi|307595610|ref|YP_003901927.1| - 0.28 11.0 3.4 0.41 10.4 3.4 1.2 1 0 0 1 1 1 0 Mer2 Methyltransf_31 PF13847.6 gi|307595611|ref|YP_003901928.1| - 1.1e-16 61.0 0.0 1.5e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|307595611|ref|YP_003901928.1| - 3.6e-15 55.9 0.1 5.6e-15 55.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|307595611|ref|YP_003901928.1| - 1.3e-14 54.7 0.1 4.1e-14 53.1 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|307595611|ref|YP_003901928.1| - 2e-12 47.1 0.2 2.8e-12 46.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|307595611|ref|YP_003901928.1| - 4.8e-11 42.6 0.0 6.5e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|307595611|ref|YP_003901928.1| - 1.8e-10 40.8 0.2 1.7e-09 37.7 0.2 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|307595611|ref|YP_003901928.1| - 6.1e-10 39.6 0.0 1.7e-09 38.2 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|307595611|ref|YP_003901928.1| - 4.1e-08 33.9 0.0 6.3e-08 33.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|307595611|ref|YP_003901928.1| - 1.2e-07 31.7 0.0 1.5e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|307595611|ref|YP_003901928.1| - 6.3e-07 28.9 0.0 8.4e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_15 PF09445.10 gi|307595611|ref|YP_003901928.1| - 7.3e-07 28.9 0.1 1.1e-06 28.3 0.1 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.18 gi|307595611|ref|YP_003901928.1| - 3.5e-06 26.5 0.0 6.9e-06 25.6 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.16 gi|307595611|ref|YP_003901928.1| - 2.6e-05 24.1 0.1 3.2e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TehB PF03848.14 gi|307595611|ref|YP_003901928.1| - 3.3e-05 23.4 0.1 8.8e-05 22.0 0.0 1.6 1 1 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|307595611|ref|YP_003901928.1| - 4e-05 23.5 0.0 5.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|307595611|ref|YP_003901928.1| - 0.00037 20.2 0.0 0.00075 19.2 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|307595611|ref|YP_003901928.1| - 0.00042 19.8 0.3 0.00097 18.6 0.1 1.7 2 0 0 2 2 2 1 Putative methyltransferase FtsJ PF01728.19 gi|307595611|ref|YP_003901928.1| - 0.00071 19.7 0.0 0.00083 19.5 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_16 PF10294.9 gi|307595611|ref|YP_003901928.1| - 0.0009 19.0 0.6 0.0087 15.8 0.1 2.4 2 1 0 2 2 2 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|307595611|ref|YP_003901928.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.9 gi|307595611|ref|YP_003901928.1| - 0.0025 17.0 0.0 0.0035 16.5 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase ADH_zinc_N PF00107.26 gi|307595611|ref|YP_003901928.1| - 0.0026 17.7 0.0 0.0048 16.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase N6-adenineMlase PF10237.9 gi|307595611|ref|YP_003901928.1| - 0.011 15.5 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase Methyltransf_9 PF08003.11 gi|307595611|ref|YP_003901928.1| - 0.013 14.4 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) GidB PF02527.15 gi|307595611|ref|YP_003901928.1| - 0.014 14.7 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_32 PF13679.6 gi|307595611|ref|YP_003901928.1| - 0.015 15.3 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|307595611|ref|YP_003901928.1| - 0.033 13.9 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) N6_N4_Mtase PF01555.18 gi|307595611|ref|YP_003901928.1| - 0.077 12.7 0.1 0.2 11.3 0.0 1.6 2 0 0 2 2 2 0 DNA methylase tRNA_U5-meth_tr PF05958.11 gi|307595611|ref|YP_003901928.1| - 0.084 11.8 0.2 0.28 10.1 0.1 1.8 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.20 gi|307595611|ref|YP_003901928.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.17 gi|307595611|ref|YP_003901928.1| - 0.13 11.4 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_8 PF05148.15 gi|307595611|ref|YP_003901928.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Hypothetical methyltransferase DAHP_snth_FXD PF18152.1 gi|307595612|ref|YP_003901929.1| - 0.11 12.4 0.6 9.5 6.1 0.0 2.6 2 0 0 2 2 2 0 DAHP synthase ferredoxin-like domain A2M PF00207.22 gi|307595613|ref|YP_003901930.1| - 0.041 13.7 0.1 0.077 12.9 0.0 1.5 1 1 0 1 1 1 0 Alpha-2-macroglobulin family DUF2232 PF09991.9 gi|307595613|ref|YP_003901930.1| - 0.054 12.7 1.1 0.065 12.4 1.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) Aminotran_1_2 PF00155.21 gi|307595615|ref|YP_003901932.1| - 4.7e-13 49.0 0.0 1.4e-12 47.5 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II DUF1884 PF08967.10 gi|307595615|ref|YP_003901932.1| - 0.092 13.0 0.1 0.23 11.7 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) FGGY_N PF00370.21 gi|307595616|ref|YP_003901933.1| - 1.3e-71 241.0 0.0 1.7e-71 240.7 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|307595616|ref|YP_003901933.1| - 1.4e-55 188.1 0.1 4e-55 186.6 0.0 1.7 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|307595616|ref|YP_003901933.1| - 0.014 15.0 0.1 0.039 13.4 0.0 1.7 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Sugar_tr PF00083.24 gi|307595617|ref|YP_003901934.1| - 1e-65 222.4 30.2 1.2e-65 222.2 30.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|307595617|ref|YP_003901934.1| - 1.1e-32 113.4 46.9 1.1e-32 113.4 46.9 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily GDPD PF03009.17 gi|307595618|ref|YP_003901935.1| - 1.6e-48 165.7 0.0 2e-48 165.4 0.0 1.1 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|307595618|ref|YP_003901935.1| - 7.2e-10 39.0 0.3 4.7e-08 33.2 0.3 2.6 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family 30K_MP_C_Ter PF11330.8 gi|307595618|ref|YP_003901935.1| - 0.13 11.6 0.5 0.22 10.8 0.1 1.5 2 0 0 2 2 2 0 C-Terminal of 30K viral movement proteins DAO PF01266.24 gi|307595619|ref|YP_003901936.1| - 1.6e-44 152.9 1.4 1.9e-44 152.7 1.4 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|307595619|ref|YP_003901936.1| - 1.5e-05 24.5 10.3 0.00022 20.7 10.3 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|307595619|ref|YP_003901936.1| - 0.00099 18.4 1.3 0.0031 16.8 1.3 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|307595619|ref|YP_003901936.1| - 0.0022 17.3 2.5 0.0022 17.3 2.5 2.3 2 1 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|307595619|ref|YP_003901936.1| - 0.0035 16.6 6.4 0.2 10.9 6.4 2.5 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|307595619|ref|YP_003901936.1| - 0.0042 15.8 1.2 0.0067 15.2 1.2 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|307595619|ref|YP_003901936.1| - 0.0068 15.5 3.8 0.0068 15.5 3.8 2.5 2 1 1 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|307595619|ref|YP_003901936.1| - 0.07 13.4 5.8 0.13 12.5 4.7 2.0 2 1 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|307595619|ref|YP_003901936.1| - 0.12 11.4 3.4 0.18 10.8 1.7 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A MSV199 PF10553.9 gi|307595619|ref|YP_003901936.1| - 0.23 11.7 0.0 0.42 10.9 0.0 1.4 1 0 0 1 1 1 0 MSV199 domain COXG PF06240.13 gi|307595620|ref|YP_003901937.1| - 2.9e-15 56.2 0.0 3.7e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|307595620|ref|YP_003901937.1| - 0.0019 18.5 0.0 0.0025 18.1 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|307595620|ref|YP_003901937.1| - 0.018 15.2 0.0 0.028 14.6 0.0 1.4 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport Hydrolase_4 PF12146.8 gi|307595621|ref|YP_003901938.1| - 1.3e-66 224.3 0.0 1.5e-66 224.1 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|307595621|ref|YP_003901938.1| - 1.2e-17 64.4 0.4 1.2e-12 48.1 0.6 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|307595621|ref|YP_003901938.1| - 3.7e-11 44.0 0.0 4.6e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|307595621|ref|YP_003901938.1| - 2.8e-08 33.5 0.2 6.1e-06 25.9 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family AXE1 PF05448.12 gi|307595621|ref|YP_003901938.1| - 1.8e-05 23.5 0.0 0.0081 14.9 0.0 2.2 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) LCAT PF02450.15 gi|307595621|ref|YP_003901938.1| - 7.3e-05 22.1 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase Abhydrolase_2 PF02230.16 gi|307595621|ref|YP_003901938.1| - 0.00011 22.1 0.2 0.04 13.7 0.0 2.3 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase DLH PF01738.18 gi|307595621|ref|YP_003901938.1| - 0.00053 19.6 0.0 0.0023 17.5 0.0 1.9 2 0 0 2 2 2 1 Dienelactone hydrolase family DUF900 PF05990.12 gi|307595621|ref|YP_003901938.1| - 0.012 15.2 0.2 0.13 11.8 0.0 2.4 2 1 1 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF900) Peptidase_S15 PF02129.18 gi|307595621|ref|YP_003901938.1| - 0.026 14.1 0.0 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) PGAP1 PF07819.13 gi|307595621|ref|YP_003901938.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein GFO_IDH_MocA PF01408.22 gi|307595622|ref|YP_003901939.1| - 2.3e-19 70.4 0.0 3.4e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|307595622|ref|YP_003901939.1| - 5.7e-05 23.1 0.0 0.0001 22.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Flavin_Reduct PF01613.18 gi|307595623|ref|YP_003901940.1| - 7e-21 74.9 0.0 8.8e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain ATPase_2 PF01637.18 gi|307595624|ref|YP_003901941.1| - 2.8e-05 24.1 0.1 8.2e-05 22.6 0.1 1.7 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|307595624|ref|YP_003901941.1| - 5.4e-05 23.6 0.3 0.0056 17.1 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|307595624|ref|YP_003901941.1| - 9.8e-05 22.6 0.1 0.00039 20.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|307595624|ref|YP_003901941.1| - 0.0005 20.1 0.1 0.11 12.6 0.0 2.2 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.6 gi|307595624|ref|YP_003901941.1| - 0.0007 19.3 0.6 0.0046 16.7 0.1 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA PF00004.29 gi|307595624|ref|YP_003901941.1| - 0.0012 19.2 0.0 0.0021 18.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|307595624|ref|YP_003901941.1| - 0.0013 17.9 0.0 0.0022 17.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|307595624|ref|YP_003901941.1| - 0.0015 18.1 0.1 0.0024 17.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region ABC_tran PF00005.27 gi|307595624|ref|YP_003901941.1| - 0.0024 18.4 0.1 0.0051 17.3 0.1 1.5 1 0 0 1 1 1 1 ABC transporter Rad17 PF03215.15 gi|307595624|ref|YP_003901941.1| - 0.0049 16.8 0.1 0.12 12.3 0.1 2.1 1 1 1 2 2 2 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|307595624|ref|YP_003901941.1| - 0.0055 16.4 0.1 0.0091 15.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|307595624|ref|YP_003901941.1| - 0.0075 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.6 gi|307595624|ref|YP_003901941.1| - 0.0081 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|307595624|ref|YP_003901941.1| - 0.0092 15.9 0.1 0.02 14.8 0.0 1.6 1 1 0 1 1 1 1 NTPase Pox_A32 PF04665.12 gi|307595624|ref|YP_003901941.1| - 0.011 15.3 0.1 0.021 14.3 0.1 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein NACHT PF05729.12 gi|307595624|ref|YP_003901941.1| - 0.011 15.7 0.1 0.042 13.8 0.0 1.9 2 0 0 2 2 2 0 NACHT domain PRK PF00485.18 gi|307595624|ref|YP_003901941.1| - 0.014 15.1 0.0 0.043 13.5 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.6 gi|307595624|ref|YP_003901941.1| - 0.017 15.4 0.1 0.03 14.7 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|307595624|ref|YP_003901941.1| - 0.023 14.5 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|307595624|ref|YP_003901941.1| - 0.035 13.0 0.1 0.049 12.5 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ATP_bind_1 PF03029.17 gi|307595624|ref|YP_003901941.1| - 0.043 13.6 0.0 0.072 12.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.17 gi|307595624|ref|YP_003901941.1| - 0.046 13.4 0.0 0.068 12.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.9 gi|307595624|ref|YP_003901941.1| - 0.054 12.4 0.0 0.082 11.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.6 gi|307595624|ref|YP_003901941.1| - 0.07 12.8 0.2 0.099 12.4 0.2 1.4 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|307595624|ref|YP_003901941.1| - 0.073 12.4 0.1 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activat PF00158.26 gi|307595624|ref|YP_003901941.1| - 0.077 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain RsgA_GTPase PF03193.16 gi|307595624|ref|YP_003901941.1| - 0.084 12.8 0.3 0.32 10.9 0.2 1.7 1 1 1 2 2 2 0 RsgA GTPase ResIII PF04851.15 gi|307595624|ref|YP_003901941.1| - 0.086 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit cobW PF02492.19 gi|307595624|ref|YP_003901941.1| - 0.092 12.3 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|307595624|ref|YP_003901941.1| - 0.11 13.0 0.0 0.19 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|307595624|ref|YP_003901941.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|307595624|ref|YP_003901941.1| - 0.14 11.9 0.1 0.33 10.7 0.1 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|307595624|ref|YP_003901941.1| - 0.17 11.1 0.0 0.21 10.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CRM1_repeat PF18777.1 gi|307595625|ref|YP_003901942.1| - 0.25 10.9 1.6 23 4.6 0.0 3.4 3 0 0 3 3 3 0 Chromosome region maintenance or exportin repeat Metallophos PF00149.28 gi|307595626|ref|YP_003901943.1| - 1.3e-29 104.2 0.7 1.7e-29 103.8 0.7 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|307595626|ref|YP_003901943.1| - 0.011 15.9 0.0 0.037 14.2 0.0 1.8 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain FAD_binding_3 PF01494.19 gi|307595627|ref|YP_003901944.1| - 4e-19 69.1 0.2 3.2e-16 59.5 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|307595627|ref|YP_003901944.1| - 1.1e-07 31.6 0.1 1.7e-07 30.9 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|307595627|ref|YP_003901944.1| - 5.9e-07 28.5 0.1 8.3e-07 28.0 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.24 gi|307595627|ref|YP_003901944.1| - 7.7e-06 25.7 0.5 0.00033 20.3 0.2 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|307595627|ref|YP_003901944.1| - 1.1e-05 24.4 0.3 0.0037 16.2 0.0 2.9 3 0 0 3 3 3 1 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|307595627|ref|YP_003901944.1| - 1.2e-05 24.6 0.4 0.0077 15.3 0.1 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|307595627|ref|YP_003901944.1| - 2.2e-05 23.8 0.1 3.2e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|307595627|ref|YP_003901944.1| - 3.1e-05 23.3 0.1 5.4e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|307595627|ref|YP_003901944.1| - 3.7e-05 23.0 0.1 0.00011 21.4 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|307595627|ref|YP_003901944.1| - 4.1e-05 23.7 0.0 0.00015 21.9 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|307595627|ref|YP_003901944.1| - 0.0003 21.3 0.2 0.0046 17.5 0.1 2.3 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|307595627|ref|YP_003901944.1| - 0.0014 17.9 0.1 0.0021 17.4 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|307595627|ref|YP_003901944.1| - 0.0047 16.2 0.1 0.0077 15.6 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|307595627|ref|YP_003901944.1| - 0.012 14.9 0.3 0.024 13.9 0.0 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|307595627|ref|YP_003901944.1| - 0.2 11.6 0.1 0.29 11.0 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.26 gi|307595628|ref|YP_003901945.1| - 1.3e-22 80.4 0.1 2.5e-22 79.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|307595628|ref|YP_003901945.1| - 1e-16 61.5 11.9 1e-16 61.5 11.9 2.9 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|307595628|ref|YP_003901945.1| - 3.4e-16 59.8 0.0 4.6e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|307595628|ref|YP_003901945.1| - 3.5e-11 42.9 0.0 5.5e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|307595628|ref|YP_003901945.1| - 1.5e-05 24.7 0.6 2.2e-05 24.1 0.1 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 DUF2067 PF09840.9 gi|307595629|ref|YP_003901946.1| - 8.2e-49 165.7 3.8 9.3e-49 165.5 3.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) Peptidase_U57 PF05582.12 gi|307595629|ref|YP_003901946.1| - 0.058 12.6 0.0 0.076 12.3 0.0 1.1 1 0 0 1 1 1 0 YabG peptidase U57 Cation_efflux PF01545.21 gi|307595630|ref|YP_003901947.1| - 4.6e-38 131.0 15.6 6.2e-38 130.5 15.6 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|307595630|ref|YP_003901947.1| - 2.1e-37 127.1 14.6 2.7e-19 69.1 4.1 3.2 2 1 1 3 3 3 3 Dimerisation domain of Zinc Transporter SpoVG PF04026.12 gi|307595630|ref|YP_003901947.1| - 0.11 12.7 0.8 0.6 10.3 0.3 2.4 2 0 0 2 2 2 0 SpoVG AMP-binding_C_2 PF14535.6 gi|307595630|ref|YP_003901947.1| - 0.47 10.8 6.5 0.18 12.2 0.9 2.8 3 0 0 3 3 3 0 AMP-binding enzyme C-terminal domain LysE PF01810.18 gi|307595631|ref|YP_003901948.1| - 0.0027 17.2 1.3 0.0027 17.2 1.3 2.3 2 0 0 2 2 2 1 LysE type translocator CdvA PF18822.1 gi|307595632|ref|YP_003901949.1| - 3.7e-05 23.6 10.6 0.054 13.3 10.1 3.1 1 1 1 2 2 2 2 CdvA-like coiled-coil domain DUF948 PF06103.11 gi|307595632|ref|YP_003901949.1| - 6.1e-05 23.2 5.3 0.069 13.4 0.3 3.2 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF948) T3SSipB PF16535.5 gi|307595632|ref|YP_003901949.1| - 0.00056 20.4 0.7 0.4 11.2 0.1 2.3 2 0 0 2 2 2 2 Type III cell invasion protein SipB GOLGA2L5 PF15070.6 gi|307595632|ref|YP_003901949.1| - 0.0032 16.2 2.3 0.0042 15.8 1.6 1.4 1 1 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 AcylCoA_dehyd_C PF12186.8 gi|307595632|ref|YP_003901949.1| - 0.0065 16.6 1.7 4.1 7.6 0.1 3.0 3 1 0 3 3 3 1 Acyl-CoA dehydrogenase C terminal TPR_MLP1_2 PF07926.12 gi|307595632|ref|YP_003901949.1| - 0.012 15.6 3.9 0.19 11.8 0.3 2.6 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF2524 PF10732.9 gi|307595632|ref|YP_003901949.1| - 0.019 15.2 2.7 1.8 8.9 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2524) Imm3 PF14425.6 gi|307595632|ref|YP_003901949.1| - 0.03 14.4 7.1 0.11 12.5 6.1 2.3 1 1 1 2 2 2 0 Immunity protein Imm3 Syntaxin PF00804.25 gi|307595632|ref|YP_003901949.1| - 0.038 13.7 3.5 0.051 13.3 3.5 1.3 1 0 0 1 1 1 0 Syntaxin SLATT_6 PF18169.1 gi|307595632|ref|YP_003901949.1| - 0.043 13.4 4.1 0.3 10.7 0.2 2.2 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 Rab5-bind PF09311.11 gi|307595632|ref|YP_003901949.1| - 0.048 13.1 7.4 0.62 9.4 0.6 2.2 1 1 1 2 2 2 0 Rabaptin-like protein KxDL PF10241.9 gi|307595632|ref|YP_003901949.1| - 0.065 13.5 5.4 11 6.4 0.0 3.8 3 1 0 4 4 4 0 Uncharacterized conserved protein GvpG PF05120.12 gi|307595632|ref|YP_003901949.1| - 0.07 13.1 0.5 0.07 13.1 0.5 2.3 3 0 0 3 3 3 0 Gas vesicle protein G Taxilin PF09728.9 gi|307595632|ref|YP_003901949.1| - 0.078 12.1 6.0 0.12 11.5 0.7 2.1 1 1 1 2 2 2 0 Myosin-like coiled-coil protein AAA_13 PF13166.6 gi|307595632|ref|YP_003901949.1| - 0.09 11.4 5.7 0.17 10.5 5.5 1.4 1 1 0 1 1 1 0 AAA domain CorA PF01544.18 gi|307595632|ref|YP_003901949.1| - 0.092 12.0 5.4 0.1 11.9 5.0 1.3 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein TMPIT PF07851.13 gi|307595632|ref|YP_003901949.1| - 0.096 11.9 4.1 1.2 8.3 0.5 2.1 1 1 1 2 2 2 0 TMPIT-like protein ApoLp-III PF07464.11 gi|307595632|ref|YP_003901949.1| - 0.097 12.8 3.7 2.3 8.3 3.2 2.6 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Rootletin PF15035.6 gi|307595632|ref|YP_003901949.1| - 0.12 12.3 4.1 11 5.9 1.1 2.7 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion FadA PF09403.10 gi|307595632|ref|YP_003901949.1| - 0.13 12.8 7.0 3.3 8.2 0.6 2.6 2 1 0 2 2 2 0 Adhesion protein FadA LOH1CR12 PF10158.9 gi|307595632|ref|YP_003901949.1| - 0.16 12.0 1.2 0.29 11.2 0.4 1.9 2 1 0 2 2 2 0 Tumour suppressor protein TSNAXIP1_N PF15739.5 gi|307595632|ref|YP_003901949.1| - 0.16 12.4 6.7 0.068 13.6 2.7 2.3 1 1 2 3 3 3 0 Translin-associated factor X-interacting N-terminus DUF4363 PF14276.6 gi|307595632|ref|YP_003901949.1| - 0.17 12.0 12.3 5.4 7.2 10.4 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4363) FapA PF03961.13 gi|307595632|ref|YP_003901949.1| - 0.23 10.0 7.2 0.061 11.9 2.2 2.1 1 1 1 2 2 2 0 Flagellar Assembly Protein A YkyA PF10368.9 gi|307595632|ref|YP_003901949.1| - 0.26 11.0 14.3 1.7 8.2 4.9 2.4 2 1 0 2 2 2 0 Putative cell-wall binding lipoprotein Mce4_CUP1 PF11887.8 gi|307595632|ref|YP_003901949.1| - 0.26 10.7 1.6 3.7 6.9 0.2 2.1 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative FRB_dom PF08771.11 gi|307595632|ref|YP_003901949.1| - 0.32 11.4 2.8 0.97 9.9 0.5 2.5 2 1 0 2 2 2 0 FKBP12-rapamycin binding domain Fib_alpha PF08702.10 gi|307595632|ref|YP_003901949.1| - 0.33 11.1 8.9 5.5 7.2 2.9 2.6 2 2 0 2 2 2 0 Fibrinogen alpha/beta chain family Syntaxin-6_N PF09177.11 gi|307595632|ref|YP_003901949.1| - 0.51 10.9 8.0 4 8.1 3.1 2.9 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF5082 PF16888.5 gi|307595632|ref|YP_003901949.1| - 0.85 9.9 9.4 2.6 8.3 3.5 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF5082) COG5 PF10392.9 gi|307595632|ref|YP_003901949.1| - 1.1 9.4 7.0 2.5 8.3 2.1 2.9 1 1 2 3 3 3 0 Golgi transport complex subunit 5 DUF16 PF01519.16 gi|307595632|ref|YP_003901949.1| - 1.2 9.7 5.9 42 4.7 3.5 3.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 Mt_ATP-synt_D PF05873.12 gi|307595632|ref|YP_003901949.1| - 1.3 8.8 5.6 3.6 7.4 0.6 2.7 1 1 2 3 3 3 0 ATP synthase D chain, mitochondrial (ATP5H) FlaC_arch PF05377.11 gi|307595632|ref|YP_003901949.1| - 2.3 8.7 12.0 13 6.3 0.2 4.5 3 2 3 6 6 6 0 Flagella accessory protein C (FlaC) APG6_N PF17675.1 gi|307595632|ref|YP_003901949.1| - 4 8.0 7.7 17 6.0 6.8 2.2 1 1 0 1 1 1 0 Apg6 coiled-coil region Osmo_CC PF08946.10 gi|307595632|ref|YP_003901949.1| - 4.8 7.5 8.0 18 5.7 0.1 3.7 4 0 0 4 4 4 0 Osmosensory transporter coiled coil CdvA PF18822.1 gi|307595633|ref|YP_003901950.1| - 2.4e-05 24.1 14.7 0.011 15.5 0.6 2.9 1 1 0 2 2 2 2 CdvA-like coiled-coil domain SHOCT PF09851.9 gi|307595633|ref|YP_003901950.1| - 0.0033 17.1 10.4 0.15 11.9 1.8 3.5 3 0 0 3 3 3 2 Short C-terminal domain Nmad5 PF18757.1 gi|307595633|ref|YP_003901950.1| - 0.0067 16.7 3.6 0.012 15.9 3.6 1.4 1 0 0 1 1 1 1 Nucleotide modification associated domain 5 RRF PF01765.19 gi|307595633|ref|YP_003901950.1| - 0.0087 16.0 3.7 0.0087 16.0 3.7 2.7 1 1 2 3 3 3 1 Ribosome recycling factor Cep57_MT_bd PF06657.13 gi|307595633|ref|YP_003901950.1| - 0.014 15.9 3.6 2.2 8.8 0.3 2.9 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 GvpG PF05120.12 gi|307595633|ref|YP_003901950.1| - 0.09 12.8 1.6 4 7.5 0.1 2.5 2 0 0 2 2 2 0 Gas vesicle protein G Spectrin PF00435.21 gi|307595633|ref|YP_003901950.1| - 0.097 13.2 7.7 0.056 13.9 2.8 2.3 1 1 1 2 2 2 0 Spectrin repeat Baculo_PEP_C PF04513.12 gi|307595633|ref|YP_003901950.1| - 0.1 12.7 1.9 0.79 9.8 0.1 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|307595633|ref|YP_003901950.1| - 0.11 13.0 0.3 0.11 13.0 0.3 2.7 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein CHDCT2 PF08074.11 gi|307595633|ref|YP_003901950.1| - 0.25 11.5 4.5 1 9.5 0.4 2.3 1 1 0 2 2 2 0 CHDCT2 (NUC038) domain ABC_tran_CTD PF16326.5 gi|307595633|ref|YP_003901950.1| - 0.3 11.4 4.1 1.4 9.2 0.2 3.0 1 1 1 2 2 2 0 ABC transporter C-terminal domain WXG100 PF06013.12 gi|307595633|ref|YP_003901950.1| - 0.3 11.3 4.6 7.7 6.8 0.1 3.0 3 0 0 3 3 3 0 Proteins of 100 residues with WXG Syntaxin-6_N PF09177.11 gi|307595633|ref|YP_003901950.1| - 0.32 11.6 7.4 2.3 8.8 0.4 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Uds1 PF15456.6 gi|307595633|ref|YP_003901950.1| - 0.32 11.2 5.1 0.31 11.2 3.4 1.8 1 1 0 1 1 1 0 Up-regulated During Septation Syntaxin_2 PF14523.6 gi|307595633|ref|YP_003901950.1| - 0.34 11.3 12.0 1.5 9.2 3.1 2.6 1 1 1 2 2 2 0 Syntaxin-like protein Prefoldin PF02996.17 gi|307595633|ref|YP_003901950.1| - 0.58 10.1 8.8 0.24 11.3 1.0 3.1 3 0 0 3 3 3 0 Prefoldin subunit CorA PF01544.18 gi|307595633|ref|YP_003901950.1| - 1 8.6 6.0 1.1 8.5 4.8 1.6 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein ZnuA PF01297.17 gi|307595633|ref|YP_003901950.1| - 1 8.7 10.0 0.35 10.2 0.3 3.1 1 1 3 4 4 4 0 Zinc-uptake complex component A periplasmic DUF4363 PF14276.6 gi|307595633|ref|YP_003901950.1| - 1.2 9.2 11.9 0.36 11.0 2.6 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4363) DASH_Spc19 PF08287.11 gi|307595633|ref|YP_003901950.1| - 1.5 8.7 9.5 0.6 10.0 1.8 2.4 2 1 0 2 2 2 0 Spc19 CLZ PF16526.5 gi|307595633|ref|YP_003901950.1| - 2 8.9 8.8 2.5 8.5 0.6 3.7 3 1 1 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF4200 PF13863.6 gi|307595633|ref|YP_003901950.1| - 5 7.5 12.7 1.7 9.1 7.5 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) YtxH PF12732.7 gi|307595633|ref|YP_003901950.1| - 6.5 7.4 6.9 1.4e+02 3.1 6.9 3.1 1 1 0 1 1 1 0 YtxH-like protein GrpE PF01025.19 gi|307595633|ref|YP_003901950.1| - 6.9 6.3 11.9 1.8 8.2 0.7 3.0 2 1 0 2 2 2 0 GrpE Occludin_ELL PF07303.13 gi|307595633|ref|YP_003901950.1| - 8.8 7.1 10.9 3.7 8.3 1.2 3.3 3 1 1 4 4 4 0 Occludin homology domain NTP_transferase PF00483.23 gi|307595634|ref|YP_003901951.1| - 5.6e-23 81.8 0.0 6.9e-23 81.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|307595634|ref|YP_003901951.1| - 0.0001 22.7 0.0 0.00012 22.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2218 PF09981.9 gi|307595635|ref|YP_003901952.1| - 0.037 14.4 0.0 0.054 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) HTH_5 PF01022.20 gi|307595635|ref|YP_003901952.1| - 0.047 13.6 0.0 0.77 9.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family PfkB PF00294.24 gi|307595636|ref|YP_003901953.1| - 7.3e-49 166.7 0.0 9e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|307595636|ref|YP_003901953.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase DNA_ligase_A_M PF01068.21 gi|307595638|ref|YP_003901955.1| - 8e-66 221.6 0.1 1.3e-65 220.9 0.1 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|307595638|ref|YP_003901955.1| - 7.1e-39 133.9 0.0 2.8e-38 132.0 0.0 1.9 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|307595638|ref|YP_003901955.1| - 1.4e-21 76.9 0.0 1.1e-20 74.0 0.0 2.3 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|307595638|ref|YP_003901955.1| - 1.9e-09 38.1 0.3 3.3e-09 37.3 0.3 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|307595638|ref|YP_003901955.1| - 0.032 14.3 0.6 0.17 11.9 0.0 2.5 4 0 0 4 4 4 0 DNA ligase OB-like domain SHMT PF00464.19 gi|307595639|ref|YP_003901956.1| - 3.6e-79 266.2 0.0 4.6e-79 265.9 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|307595639|ref|YP_003901956.1| - 5.8e-13 48.7 0.0 1.2e-12 47.7 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|307595639|ref|YP_003901956.1| - 7.6e-10 38.5 0.0 1.2e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|307595639|ref|YP_003901956.1| - 2.3e-06 26.8 0.1 3.1e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|307595639|ref|YP_003901956.1| - 0.00014 21.3 0.0 0.011 15.1 0.0 2.3 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|307595639|ref|YP_003901956.1| - 0.0041 15.7 0.1 0.028 13.0 0.0 2.1 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme ProRS-C_2 PF09181.10 gi|307595639|ref|YP_003901956.1| - 0.064 13.4 0.4 0.32 11.2 0.1 2.2 2 0 0 2 2 2 0 Prolyl-tRNA synthetase, C-terminal SelA PF03841.13 gi|307595639|ref|YP_003901956.1| - 0.08 11.9 0.0 0.22 10.4 0.0 1.7 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase MAF_flag10 PF01973.18 gi|307595640|ref|YP_003901957.1| - 4.6e-09 36.2 0.0 7.1e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 PhoU PF01895.19 gi|307595640|ref|YP_003901957.1| - 0.048 14.1 0.4 0.081 13.4 0.4 1.3 1 0 0 1 1 1 0 PhoU domain Ribosomal_S4e PF00900.20 gi|307595641|ref|YP_003901958.1| - 8.7e-28 96.0 0.2 1.9e-27 95.0 0.0 1.7 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|307595641|ref|YP_003901958.1| - 1.2e-13 50.9 3.5 1.9e-13 50.3 3.5 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|307595641|ref|YP_003901958.1| - 1.7e-10 40.4 1.0 4.2e-10 39.2 0.2 2.1 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|307595641|ref|YP_003901958.1| - 0.058 13.4 0.3 0.19 11.7 0.3 1.9 1 0 0 1 1 1 0 KOW motif Ribosomal_L26 PF16906.5 gi|307595642|ref|YP_003901959.1| - 7.3e-32 109.7 0.4 1.2e-31 109.0 0.4 1.3 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|307595642|ref|YP_003901959.1| - 1.2e-07 31.4 2.1 1.2e-07 31.4 2.1 2.2 3 0 0 3 3 3 1 KOW motif IF2_assoc PF08364.11 gi|307595642|ref|YP_003901959.1| - 0.013 15.7 2.2 0.019 15.2 0.5 2.3 2 0 0 2 2 2 0 Bacterial translation initiation factor IF-2 associated region Nucleoporin2 PF04096.14 gi|307595642|ref|YP_003901959.1| - 0.019 15.0 0.1 0.034 14.3 0.1 1.3 1 0 0 1 1 1 0 Nucleoporin autopeptidase EamA PF00892.20 gi|307595643|ref|YP_003901960.1| - 7.5e-32 110.4 42.7 3.8e-16 59.5 17.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family Phage_holin_3_1 PF05106.12 gi|307595643|ref|YP_003901960.1| - 0.95 9.9 7.3 12 6.4 1.7 3.1 2 1 0 2 2 2 0 Phage holin family (Lysis protein S) MTS PF05175.14 gi|307595644|ref|YP_003901961.1| - 4.4e-41 140.2 0.0 5.1e-41 140.0 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|307595644|ref|YP_003901961.1| - 1e-14 54.6 0.3 1.3e-14 54.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|307595644|ref|YP_003901961.1| - 1.4e-14 54.2 0.0 1.7e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307595644|ref|YP_003901961.1| - 4.7e-10 40.0 0.0 7.4e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|307595644|ref|YP_003901961.1| - 1.3e-07 32.2 0.0 2.2e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|307595644|ref|YP_003901961.1| - 5.1e-07 30.3 0.0 7.9e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|307595644|ref|YP_003901961.1| - 9.6e-07 28.8 0.0 1.3e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|307595644|ref|YP_003901961.1| - 1.9e-06 27.9 0.0 2.5e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|307595644|ref|YP_003901961.1| - 3.5e-06 26.9 0.1 4.7e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Met_10 PF02475.16 gi|307595644|ref|YP_003901961.1| - 4.6e-06 26.5 0.1 6.4e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein tRNA_U5-meth_tr PF05958.11 gi|307595644|ref|YP_003901961.1| - 0.00013 21.1 0.1 0.00025 20.2 0.1 1.4 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Cons_hypoth95 PF03602.15 gi|307595644|ref|YP_003901961.1| - 0.00016 21.4 0.0 0.0002 21.1 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PCMT PF01135.19 gi|307595644|ref|YP_003901961.1| - 0.0013 18.6 0.1 0.0018 18.1 0.1 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_Mtase PF02384.16 gi|307595644|ref|YP_003901961.1| - 0.019 14.2 0.0 0.025 13.9 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_32 PF13679.6 gi|307595644|ref|YP_003901961.1| - 0.02 14.9 0.0 0.027 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|307595644|ref|YP_003901961.1| - 0.026 14.0 0.1 0.037 13.4 0.1 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|307595644|ref|YP_003901961.1| - 0.037 13.5 0.4 0.1 12.0 0.1 1.8 2 0 0 2 2 2 0 Putative methyltransferase Ubie_methyltran PF01209.18 gi|307595644|ref|YP_003901961.1| - 0.069 12.5 0.1 0.13 11.6 0.1 1.5 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltr_RsmB-F PF01189.17 gi|307595644|ref|YP_003901961.1| - 0.073 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|307595644|ref|YP_003901961.1| - 0.088 12.1 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TRM PF02005.16 gi|307595644|ref|YP_003901961.1| - 0.099 11.8 0.1 0.12 11.5 0.1 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Peptidase_M1 PF01433.20 gi|307595645|ref|YP_003901962.1| - 1.2e-53 182.0 0.2 2e-53 181.2 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M1 domain HEAT_2 PF13646.6 gi|307595645|ref|YP_003901962.1| - 1.6e-33 114.9 6.1 2.4e-15 56.7 3.0 4.2 2 1 1 4 4 4 3 HEAT repeats Peptidase_M1_N PF17900.1 gi|307595645|ref|YP_003901962.1| - 1.9e-17 64.0 0.0 3e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT PF02985.22 gi|307595645|ref|YP_003901962.1| - 1.6e-15 55.8 0.8 0.084 13.2 0.0 6.0 6 0 0 6 6 6 4 HEAT repeat HEAT_PBS PF03130.16 gi|307595645|ref|YP_003901962.1| - 3.1e-11 42.8 19.5 0.0002 21.7 0.9 7.9 8 0 0 8 8 8 3 PBS lyase HEAT-like repeat Vitellogenin_N PF01347.22 gi|307595645|ref|YP_003901962.1| - 5.7e-05 21.7 0.0 0.0047 15.4 0.0 2.3 1 1 1 2 2 2 2 Lipoprotein amino terminal region HEAT_EZ PF13513.6 gi|307595645|ref|YP_003901962.1| - 0.00017 22.0 6.1 0.0035 17.8 1.4 4.3 3 1 1 4 4 4 1 HEAT-like repeat BMFP PF04380.13 gi|307595645|ref|YP_003901962.1| - 0.09 13.3 3.6 0.27 11.7 3.6 1.8 1 0 0 1 1 1 0 Membrane fusogenic activity Peptidase_M61 PF05299.12 gi|307595645|ref|YP_003901962.1| - 0.13 12.7 3.9 1.5 9.3 3.9 2.5 1 1 0 1 1 1 0 M61 glycyl aminopeptidase ALF PF03752.13 gi|307595645|ref|YP_003901962.1| - 3.1 7.9 6.6 4.3 7.4 2.5 3.0 2 1 1 3 3 3 0 Short repeats of unknown function TusA PF01206.17 gi|307595646|ref|YP_003901963.1| - 5.7e-08 32.5 0.0 6.4e-08 32.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Peptidase_S24 PF00717.23 gi|307595646|ref|YP_003901963.1| - 0.0022 17.9 0.0 0.0028 17.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase S24-like DUF5446 PF17522.2 gi|307595647|ref|YP_003901964.1| - 0.01 16.0 2.4 0.043 14.0 0.8 2.4 2 1 0 2 2 2 0 Family of unknown function (DUF5446) Bet_v_1 PF00407.19 gi|307595647|ref|YP_003901964.1| - 0.072 13.0 0.3 0.73 9.7 0.0 2.1 2 0 0 2 2 2 0 Pathogenesis-related protein Bet v I family AMP-binding PF00501.28 gi|307595648|ref|YP_003901965.1| - 2.1e-96 323.1 0.0 2.6e-96 322.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|307595648|ref|YP_003901965.1| - 4.2e-28 98.1 0.7 2.5e-27 95.6 0.5 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|307595648|ref|YP_003901965.1| - 1.3e-20 73.1 0.4 1.3e-20 73.1 0.4 1.8 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus ADPrib_exo_Tox PF03496.14 gi|307595648|ref|YP_003901965.1| - 0.081 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme Gpr1_Fun34_YaaH PF01184.19 gi|307595649|ref|YP_003901966.1| - 1.5e-38 132.5 28.0 2.2e-38 131.9 28.0 1.3 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Thy1 PF02511.15 gi|307595650|ref|YP_003901967.1| - 2.5e-39 135.0 0.0 3e-39 134.8 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Polysacc_synt PF01943.17 gi|307595651|ref|YP_003901968.1| - 2.3e-05 23.9 31.4 2.3e-05 23.9 31.4 3.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NTP_transferase PF00483.23 gi|307595652|ref|YP_003901969.1| - 1e-42 146.5 0.0 1.2e-42 146.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|307595652|ref|YP_003901969.1| - 1e-10 42.2 0.0 1.4e-10 41.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Bactofilin PF04519.13 gi|307595652|ref|YP_003901969.1| - 3.9e-05 23.9 1.8 7.2e-05 23.0 1.8 1.3 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|307595652|ref|YP_003901969.1| - 0.0005 19.7 5.3 0.0046 16.6 0.2 3.5 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Lyase_8_N PF08124.11 gi|307595652|ref|YP_003901969.1| - 0.0096 14.9 0.0 0.014 14.3 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide lyase family 8, N terminal alpha-helical domain Glycos_transf_2 PF00535.26 gi|307595652|ref|YP_003901969.1| - 0.022 14.6 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Epimerase PF01370.21 gi|307595653|ref|YP_003901970.1| - 3.4e-35 121.7 0.0 4.1e-35 121.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|307595653|ref|YP_003901970.1| - 4.5e-22 78.9 0.0 8.1e-22 78.0 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|307595653|ref|YP_003901970.1| - 1.6e-12 47.1 0.0 2e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|307595653|ref|YP_003901970.1| - 4.7e-11 42.2 0.0 6.3e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|307595653|ref|YP_003901970.1| - 1.5e-07 31.5 0.0 2.5e-07 30.8 0.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|307595653|ref|YP_003901970.1| - 0.00045 19.4 0.1 0.0059 15.8 0.0 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein XhlA PF10779.9 gi|307595654|ref|YP_003901971.1| - 1.2e-15 57.5 19.6 7.2e-07 29.3 4.7 3.7 2 1 1 3 3 3 2 Haemolysin XhlA Tropomyosin PF00261.20 gi|307595654|ref|YP_003901971.1| - 3.1e-11 43.1 7.5 5e-11 42.4 7.5 1.3 1 0 0 1 1 1 1 Tropomyosin FlaC_arch PF05377.11 gi|307595654|ref|YP_003901971.1| - 7.5e-11 42.3 18.1 0.0022 18.4 3.0 4.5 1 1 3 4 4 4 4 Flagella accessory protein C (FlaC) EzrA PF06160.12 gi|307595654|ref|YP_003901971.1| - 6.3e-10 37.9 6.3 6.3e-10 37.9 6.3 1.4 2 0 0 2 2 1 1 Septation ring formation regulator, EzrA DUF1664 PF07889.12 gi|307595654|ref|YP_003901971.1| - 8.2e-09 35.6 7.9 0.00034 20.7 5.0 2.8 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|307595654|ref|YP_003901971.1| - 9.7e-09 35.4 2.9 0.0081 16.4 0.6 3.7 2 1 1 3 3 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|307595654|ref|YP_003901971.1| - 1.3e-08 34.9 0.4 0.00057 19.9 1.2 2.4 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF16 PF01519.16 gi|307595654|ref|YP_003901971.1| - 2.5e-08 34.3 11.1 5.5e-06 26.8 3.8 3.1 1 1 3 4 4 3 2 Protein of unknown function DUF16 ABC_tran_CTD PF16326.5 gi|307595654|ref|YP_003901971.1| - 4.1e-08 33.3 9.3 0.15 12.3 1.1 5.1 1 1 2 3 3 3 2 ABC transporter C-terminal domain AAA_13 PF13166.6 gi|307595654|ref|YP_003901971.1| - 4.8e-08 32.1 3.4 8.7e-08 31.3 3.4 1.4 1 0 0 1 1 1 1 AAA domain Laminin_II PF06009.12 gi|307595654|ref|YP_003901971.1| - 7.6e-08 32.5 2.1 0.00017 21.7 0.8 2.3 1 1 1 2 2 2 2 Laminin Domain II MscS_porin PF12795.7 gi|307595654|ref|YP_003901971.1| - 1.8e-07 31.0 0.0 0.00048 19.8 0.1 2.3 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain Snapin_Pallidin PF14712.6 gi|307595654|ref|YP_003901971.1| - 2.6e-07 31.0 11.9 0.12 12.8 1.0 4.8 2 1 2 4 4 3 3 Snapin/Pallidin HrpB7 PF09486.10 gi|307595654|ref|YP_003901971.1| - 5.9e-07 30.0 3.1 0.011 16.1 0.7 2.2 1 1 1 2 2 2 2 Bacterial type III secretion protein (HrpB7) Tropomyosin_1 PF12718.7 gi|307595654|ref|YP_003901971.1| - 1e-06 28.9 5.9 0.026 14.7 0.3 3.1 2 1 0 3 3 2 1 Tropomyosin like Sugarporin_N PF11471.8 gi|307595654|ref|YP_003901971.1| - 1.9e-06 27.7 8.8 0.98 9.4 0.0 5.9 2 1 4 6 6 5 1 Maltoporin periplasmic N-terminal extension Prefoldin_2 PF01920.20 gi|307595654|ref|YP_003901971.1| - 1.9e-06 27.8 6.9 0.37 10.8 0.1 4.2 1 1 3 4 4 4 3 Prefoldin subunit RmuC PF02646.16 gi|307595654|ref|YP_003901971.1| - 2.3e-06 27.0 2.4 0.036 13.2 0.8 2.5 1 1 1 2 2 2 2 RmuC family Fib_alpha PF08702.10 gi|307595654|ref|YP_003901971.1| - 2.4e-06 27.8 10.4 0.0002 21.5 2.7 2.7 2 1 1 3 3 2 2 Fibrinogen alpha/beta chain family Myosin_tail_1 PF01576.19 gi|307595654|ref|YP_003901971.1| - 2.4e-06 25.7 4.8 3.4e-06 25.2 4.8 1.2 1 0 0 1 1 1 1 Myosin tail SlyX PF04102.12 gi|307595654|ref|YP_003901971.1| - 3.8e-06 27.4 7.4 0.088 13.4 0.6 4.0 3 1 1 4 4 3 1 SlyX COG6 PF06419.11 gi|307595654|ref|YP_003901971.1| - 3.9e-06 25.4 1.9 0.021 13.1 1.1 2.2 1 1 1 2 2 2 2 Conserved oligomeric complex COG6 Tektin PF03148.14 gi|307595654|ref|YP_003901971.1| - 4.7e-06 25.6 7.4 0.0057 15.4 2.0 2.3 1 1 1 2 2 2 2 Tektin family Vac_Fusion PF02346.16 gi|307595654|ref|YP_003901971.1| - 5.1e-06 26.0 15.7 0.1 12.2 1.7 4.3 1 1 5 6 6 6 4 Chordopoxvirus multifunctional envelope protein A27 IFT57 PF10498.9 gi|307595654|ref|YP_003901971.1| - 1.3e-05 24.4 4.3 0.021 13.8 0.1 2.1 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 HemX PF04375.14 gi|307595654|ref|YP_003901971.1| - 1.4e-05 24.5 0.0 0.01 15.2 0.0 2.6 2 1 1 3 3 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase Spc7 PF08317.11 gi|307595654|ref|YP_003901971.1| - 1.6e-05 24.0 3.0 2.6e-05 23.3 3.0 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein Exonuc_VII_L PF02601.15 gi|307595654|ref|YP_003901971.1| - 1.8e-05 24.5 0.2 6e-05 22.8 0.2 1.8 1 1 0 1 1 1 1 Exonuclease VII, large subunit SKA1 PF07160.12 gi|307595654|ref|YP_003901971.1| - 2e-05 24.6 2.1 0.48 10.2 0.1 3.2 1 1 2 3 3 3 1 Spindle and kinetochore-associated protein 1 CENP-F_leu_zip PF10473.9 gi|307595654|ref|YP_003901971.1| - 2.1e-05 24.6 4.9 3.2e-05 24.0 4.9 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CLZ PF16526.5 gi|307595654|ref|YP_003901971.1| - 2.2e-05 24.7 7.1 0.12 12.7 0.2 3.9 2 1 3 5 5 4 4 C-terminal leucine zipper domain of cyclic nucleotide-gated channels NPV_P10 PF05531.12 gi|307595654|ref|YP_003901971.1| - 2.3e-05 24.8 3.7 0.028 14.9 2.1 3.5 2 1 1 3 3 2 1 Nucleopolyhedrovirus P10 protein DUF3450 PF11932.8 gi|307595654|ref|YP_003901971.1| - 3.4e-05 23.3 0.8 0.057 12.7 0.6 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) TMPIT PF07851.13 gi|307595654|ref|YP_003901971.1| - 3.5e-05 23.2 0.4 0.17 11.1 0.1 2.2 1 1 1 2 2 2 2 TMPIT-like protein Nup54 PF13874.6 gi|307595654|ref|YP_003901971.1| - 5.3e-05 23.3 1.6 0.0012 19.0 1.7 2.3 1 1 0 1 1 1 1 Nucleoporin complex subunit 54 WASH_WAHD PF11945.8 gi|307595654|ref|YP_003901971.1| - 6.5e-05 22.6 17.6 0.084 12.4 2.6 3.3 1 1 2 3 3 3 3 WAHD domain of WASH complex ADIP PF11559.8 gi|307595654|ref|YP_003901971.1| - 7e-05 23.0 2.0 0.0012 19.0 0.7 2.2 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding FPP PF05911.11 gi|307595654|ref|YP_003901971.1| - 8.4e-05 21.0 0.8 0.00015 20.2 0.8 1.4 1 1 0 1 1 1 1 Filament-like plant protein, long coiled-coil FliD_C PF07195.12 gi|307595654|ref|YP_003901971.1| - 8.7e-05 22.1 2.0 0.045 13.2 0.6 3.1 1 1 1 2 2 2 1 Flagellar hook-associated protein 2 C-terminus DUF2802 PF10975.8 gi|307595654|ref|YP_003901971.1| - 9.3e-05 22.5 1.9 5.2 7.3 0.1 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF2802) Sec34 PF04136.15 gi|307595654|ref|YP_003901971.1| - 0.00012 22.0 0.3 0.13 12.2 0.2 2.5 1 1 1 2 2 2 1 Sec34-like family Fmp27_WPPW PF10359.9 gi|307595654|ref|YP_003901971.1| - 0.00013 20.9 8.9 0.0065 15.4 1.7 2.1 1 1 1 2 2 2 2 RNA pol II promoter Fmp27 protein domain Nsp1_C PF05064.13 gi|307595654|ref|YP_003901971.1| - 0.00015 21.5 1.8 0.15 11.9 1.9 3.0 1 1 1 2 2 2 1 Nsp1-like C-terminal region DUF4140 PF13600.6 gi|307595654|ref|YP_003901971.1| - 0.00016 22.0 4.1 0.5 10.8 3.6 3.7 1 1 0 1 1 1 1 N-terminal domain of unknown function (DUF4140) BRE1 PF08647.11 gi|307595654|ref|YP_003901971.1| - 0.00016 21.6 0.7 0.00087 19.3 0.2 2.2 1 1 0 2 2 1 1 BRE1 E3 ubiquitin ligase DUF2730 PF10805.8 gi|307595654|ref|YP_003901971.1| - 0.00018 21.6 0.9 0.83 9.8 0.5 3.5 1 1 2 3 3 3 1 Protein of unknown function (DUF2730) DHR10 PF18595.1 gi|307595654|ref|YP_003901971.1| - 0.00018 21.5 1.9 0.1 12.7 0.8 2.7 1 1 1 2 2 2 1 Designed helical repeat protein 10 domain SPATA24 PF15175.6 gi|307595654|ref|YP_003901971.1| - 0.00019 21.4 5.9 0.0057 16.6 2.3 2.5 1 1 1 2 2 2 1 Spermatogenesis-associated protein 24 SesA PF17107.5 gi|307595654|ref|YP_003901971.1| - 0.00025 21.2 0.1 0.91 9.7 0.2 2.5 1 1 1 2 2 2 2 N-terminal domain on NACHT_NTPase and P-loop NTPases FliJ PF02050.16 gi|307595654|ref|YP_003901971.1| - 0.00026 21.2 0.3 0.44 10.8 0.0 2.3 1 1 1 2 2 2 2 Flagellar FliJ protein CCDC53 PF10152.9 gi|307595654|ref|YP_003901971.1| - 0.0003 21.2 6.8 2.5 8.5 0.6 3.7 2 1 2 4 4 3 0 Subunit CCDC53 of WASH complex DUF4988 PF16378.5 gi|307595654|ref|YP_003901971.1| - 0.00031 20.5 15.9 0.064 12.9 1.8 4.1 1 1 3 4 4 4 2 Domain of unknown function Lebercilin PF15619.6 gi|307595654|ref|YP_003901971.1| - 0.00032 20.4 1.5 0.00067 19.4 1.4 1.5 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Sipho_Gp157 PF05565.11 gi|307595654|ref|YP_003901971.1| - 0.00037 20.5 9.6 0.015 15.3 3.1 2.5 1 1 1 2 2 2 1 Siphovirus Gp157 PI3K_P85_iSH2 PF16454.5 gi|307595654|ref|YP_003901971.1| - 0.00038 20.1 0.7 0.00064 19.4 0.7 1.3 1 0 0 1 1 1 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain TRPM_tetra PF16519.5 gi|307595654|ref|YP_003901971.1| - 0.00042 20.3 19.2 0.011 15.8 2.3 4.1 2 1 2 5 5 4 2 Tetramerisation domain of TRPM HMMR_N PF15905.5 gi|307595654|ref|YP_003901971.1| - 0.0006 19.4 1.3 0.00098 18.7 1.3 1.3 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Laminin_I PF06008.14 gi|307595654|ref|YP_003901971.1| - 0.00064 19.5 2.1 0.012 15.3 0.4 2.1 1 1 1 2 2 2 1 Laminin Domain I ATG16 PF08614.11 gi|307595654|ref|YP_003901971.1| - 0.0007 19.9 0.6 0.062 13.5 0.2 2.2 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) COG2 PF06148.11 gi|307595654|ref|YP_003901971.1| - 0.00081 19.5 3.6 0.21 11.7 0.7 3.1 2 1 1 3 3 2 1 COG (conserved oligomeric Golgi) complex component, COG2 DUF4164 PF13747.6 gi|307595654|ref|YP_003901971.1| - 0.001 19.3 10.6 0.31 11.4 8.4 3.2 1 1 2 3 3 3 1 Domain of unknown function (DUF4164) DUF4795 PF16043.5 gi|307595654|ref|YP_003901971.1| - 0.001 18.7 1.2 0.099 12.2 1.0 2.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) DUF948 PF06103.11 gi|307595654|ref|YP_003901971.1| - 0.001 19.3 0.0 0.56 10.5 0.0 2.6 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) FmiP_Thoc5 PF09766.9 gi|307595654|ref|YP_003901971.1| - 0.001 18.4 0.2 0.15 11.3 0.1 2.4 1 1 1 2 2 2 1 Fms-interacting protein/Thoc5 DASH_Spc19 PF08287.11 gi|307595654|ref|YP_003901971.1| - 0.0011 18.8 4.4 0.65 9.9 1.6 3.1 1 1 2 3 3 3 1 Spc19 DUF3584 PF12128.8 gi|307595654|ref|YP_003901971.1| - 0.0013 16.4 1.3 0.0013 16.4 1.3 1.3 2 0 0 2 2 1 1 Protein of unknown function (DUF3584) Phage_tail_NK PF16532.5 gi|307595654|ref|YP_003901971.1| - 0.0016 18.1 0.5 0.053 13.1 0.1 2.9 1 1 2 3 3 2 1 Sf6-type phage tail needle knob or tip of some Caudovirales DUF812 PF05667.11 gi|307595654|ref|YP_003901971.1| - 0.0017 17.3 4.6 0.12 11.2 4.6 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF812) GAS PF13851.6 gi|307595654|ref|YP_003901971.1| - 0.0018 17.6 1.1 0.11 11.8 1.0 2.1 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding HOOK PF05622.12 gi|307595654|ref|YP_003901971.1| - 0.0019 16.5 3.6 0.0022 16.2 3.6 1.1 1 0 0 1 1 1 1 HOOK protein Allexi_40kDa PF05549.11 gi|307595654|ref|YP_003901971.1| - 0.002 17.7 1.1 0.034 13.7 0.6 2.1 1 1 1 2 2 2 1 Allexivirus 40kDa protein Occludin_ELL PF07303.13 gi|307595654|ref|YP_003901971.1| - 0.0023 18.7 0.5 0.45 11.3 0.1 2.8 1 1 1 2 2 2 1 Occludin homology domain DUF5082 PF16888.5 gi|307595654|ref|YP_003901971.1| - 0.0025 18.1 14.1 0.039 14.2 0.5 3.5 1 1 2 3 3 3 2 Domain of unknown function (DUF5082) Cep57_CLD PF14073.6 gi|307595654|ref|YP_003901971.1| - 0.003 17.6 0.7 0.021 14.9 0.7 2.2 1 1 0 1 1 1 1 Centrosome localisation domain of Cep57 TBK1_CCD1 PF18394.1 gi|307595654|ref|YP_003901971.1| - 0.0036 16.9 3.7 0.81 9.2 0.8 3.3 1 1 2 3 3 3 1 TANK-binding kinase 1 coiled-coil domain 1 Spectrin PF00435.21 gi|307595654|ref|YP_003901971.1| - 0.0038 17.7 0.8 0.018 15.5 0.1 2.5 2 1 0 2 2 1 1 Spectrin repeat Atg14 PF10186.9 gi|307595654|ref|YP_003901971.1| - 0.0041 16.3 2.3 0.0057 15.8 2.3 1.4 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3552 PF12072.8 gi|307595654|ref|YP_003901971.1| - 0.0043 16.5 8.6 0.28 10.6 0.6 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) DUF4200 PF13863.6 gi|307595654|ref|YP_003901971.1| - 0.0047 17.3 6.0 0.096 13.1 6.0 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4200) Jnk-SapK_ap_N PF09744.9 gi|307595654|ref|YP_003901971.1| - 0.0051 17.1 1.0 0.54 10.5 0.3 2.4 1 1 1 2 2 2 1 JNK_SAPK-associated protein-1 DUF724 PF05266.14 gi|307595654|ref|YP_003901971.1| - 0.0058 16.5 5.5 0.087 12.6 2.5 2.6 2 1 0 2 2 1 1 Protein of unknown function (DUF724) MAD PF05557.13 gi|307595654|ref|YP_003901971.1| - 0.0061 15.0 2.8 0.0086 14.5 2.8 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein Fez1 PF06818.15 gi|307595654|ref|YP_003901971.1| - 0.0069 16.9 2.5 0.095 13.1 2.5 2.1 1 1 0 1 1 1 1 Fez1 ERM PF00769.19 gi|307595654|ref|YP_003901971.1| - 0.0075 16.1 1.3 0.0095 15.8 1.3 1.3 1 0 0 1 1 1 1 Ezrin/radixin/moesin family Vps5 PF09325.10 gi|307595654|ref|YP_003901971.1| - 0.0087 15.6 3.1 0.27 10.8 0.3 2.8 1 1 0 2 2 2 1 Vps5 C terminal like V_ATPase_I PF01496.19 gi|307595654|ref|YP_003901971.1| - 0.0094 13.9 4.7 0.057 11.3 4.7 1.9 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family Troponin PF00992.20 gi|307595654|ref|YP_003901971.1| - 0.0095 16.2 9.6 0.01 16.2 5.6 2.2 1 1 1 2 2 2 1 Troponin Filo_VP35 PF02097.15 gi|307595654|ref|YP_003901971.1| - 0.0099 15.0 2.9 7.3 5.6 0.6 3.2 1 1 2 3 3 3 0 Filoviridae VP35 PTRF_SDPR PF15237.6 gi|307595654|ref|YP_003901971.1| - 0.01 15.5 8.1 0.033 13.8 4.6 2.3 1 1 1 2 2 2 0 PTRF/SDPR family Med9 PF07544.13 gi|307595654|ref|YP_003901971.1| - 0.011 15.9 10.6 0.036 14.1 3.7 2.8 2 1 1 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 Tnp_22_trimer PF17489.2 gi|307595654|ref|YP_003901971.1| - 0.011 15.6 26.4 0.28 11.2 0.7 5.4 1 1 3 5 5 5 0 L1 transposable element trimerization domain DUF241 PF03087.14 gi|307595654|ref|YP_003901971.1| - 0.013 15.4 5.8 0.16 11.7 0.5 2.6 1 1 1 2 2 2 0 Arabidopsis protein of unknown function CdvA PF18822.1 gi|307595654|ref|YP_003901971.1| - 0.013 15.4 9.1 0.79 9.6 3.3 3.0 1 1 2 3 3 3 0 CdvA-like coiled-coil domain DUF4446 PF14584.6 gi|307595654|ref|YP_003901971.1| - 0.013 15.5 3.0 2.4 8.2 0.8 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Flagellin_C PF00700.21 gi|307595654|ref|YP_003901971.1| - 0.014 15.7 4.6 3 8.2 0.6 3.4 1 1 2 3 3 3 0 Bacterial flagellin C-terminal helical region SKA2 PF16740.5 gi|307595654|ref|YP_003901971.1| - 0.015 15.1 0.5 0.45 10.3 0.5 2.9 1 1 0 1 1 1 0 Spindle and kinetochore-associated protein 2 Uso1_p115_C PF04871.13 gi|307595654|ref|YP_003901971.1| - 0.015 15.6 0.0 5 7.5 0.0 2.3 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF677 PF05055.12 gi|307595654|ref|YP_003901971.1| - 0.016 14.1 4.4 0.036 13.0 1.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF677) phiKZ_IP PF12699.7 gi|307595654|ref|YP_003901971.1| - 0.016 14.4 7.9 0.7 9.0 0.3 3.1 2 1 1 3 3 2 0 phiKZ-like phage internal head proteins DUF2959 PF11172.8 gi|307595654|ref|YP_003901971.1| - 0.017 15.3 4.8 1.2 9.2 0.1 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) UPF0242 PF06785.11 gi|307595654|ref|YP_003901971.1| - 0.017 15.2 0.4 0.027 14.6 0.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus HSBP1 PF06825.12 gi|307595654|ref|YP_003901971.1| - 0.018 14.9 16.6 0.24 11.3 0.3 4.7 1 1 3 4 4 4 0 Heat shock factor binding protein 1 Spc24 PF08286.11 gi|307595654|ref|YP_003901971.1| - 0.018 15.3 5.5 0.98 9.7 0.6 3.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 V-SNARE_C PF12352.8 gi|307595654|ref|YP_003901971.1| - 0.019 15.3 6.9 2.4 8.5 0.1 4.1 1 1 4 5 5 5 0 Snare region anchored in the vesicle membrane C-terminus SOAR PF16533.5 gi|307595654|ref|YP_003901971.1| - 0.02 14.9 4.6 5.7 7.0 0.2 3.3 1 1 2 3 3 3 0 STIM1 Orai1-activating region APG17 PF04108.12 gi|307595654|ref|YP_003901971.1| - 0.022 13.9 3.9 0.23 10.5 0.3 2.2 1 1 1 2 2 2 0 Autophagy protein Apg17 EMP24_GP25L PF01105.24 gi|307595654|ref|YP_003901971.1| - 0.03 14.3 7.2 26 4.7 7.2 3.0 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Prominin PF05478.11 gi|307595654|ref|YP_003901971.1| - 0.03 12.3 4.6 0.31 8.9 0.7 2.1 1 1 1 2 2 2 0 Prominin ISG65-75 PF11727.8 gi|307595654|ref|YP_003901971.1| - 0.03 13.6 2.6 2.7 7.2 1.5 2.4 1 1 1 2 2 2 0 Invariant surface glycoprotein CCDC144C PF14915.6 gi|307595654|ref|YP_003901971.1| - 0.031 13.4 2.1 0.21 10.7 1.8 1.9 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region THOC7 PF05615.13 gi|307595654|ref|YP_003901971.1| - 0.031 14.5 5.4 0.023 15.0 2.9 2.0 2 1 0 2 2 1 0 Tho complex subunit 7 Prefoldin PF02996.17 gi|307595654|ref|YP_003901971.1| - 0.033 14.1 6.1 1.2 9.1 0.3 3.8 1 1 4 5 5 5 0 Prefoldin subunit CALCOCO1 PF07888.11 gi|307595654|ref|YP_003901971.1| - 0.035 13.0 6.9 0.014 14.3 4.5 1.6 2 0 0 2 2 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Noelin-1 PF12308.8 gi|307595654|ref|YP_003901971.1| - 0.038 14.0 2.8 2 8.5 0.2 2.9 1 1 2 3 3 3 0 Neurogenesis glycoprotein DUF4472 PF14739.6 gi|307595654|ref|YP_003901971.1| - 0.039 14.7 2.3 1.2 9.9 1.1 2.7 2 1 2 4 4 3 0 Domain of unknown function (DUF4472) CorA PF01544.18 gi|307595654|ref|YP_003901971.1| - 0.047 13.0 14.1 0.029 13.7 8.9 2.6 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein DUF4600 PF15372.6 gi|307595654|ref|YP_003901971.1| - 0.048 14.1 1.4 0.048 14.1 1.4 2.4 2 1 1 3 3 2 0 Domain of unknown function (DUF4600) Vps53_N PF04100.12 gi|307595654|ref|YP_003901971.1| - 0.055 12.4 7.0 0.12 11.4 7.0 1.6 1 1 0 1 1 1 0 Vps53-like, N-terminal Tho2 PF11262.8 gi|307595654|ref|YP_003901971.1| - 0.057 12.6 1.3 0.16 11.2 0.9 1.8 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 PEARLI-4 PF05278.12 gi|307595654|ref|YP_003901971.1| - 0.057 13.0 4.4 1.6 8.3 0.4 2.8 1 1 2 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) TraF_2 PF13729.6 gi|307595654|ref|YP_003901971.1| - 0.063 12.7 3.1 3 7.1 0.5 2.4 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Sec3_C PF09763.9 gi|307595654|ref|YP_003901971.1| - 0.063 11.7 4.4 0.24 9.7 1.2 2.2 1 1 2 3 3 3 0 Exocyst complex component Sec3 DUF2721 PF11026.8 gi|307595654|ref|YP_003901971.1| - 0.077 12.9 10.6 0.65 9.9 1.1 3.6 2 1 2 4 4 3 0 Protein of unknown function (DUF2721) YkyA PF10368.9 gi|307595654|ref|YP_003901971.1| - 0.081 12.6 6.8 0.56 9.8 6.9 2.2 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein PspA_IM30 PF04012.12 gi|307595654|ref|YP_003901971.1| - 0.092 12.3 0.8 6.6 6.2 0.1 2.3 1 1 1 2 2 2 0 PspA/IM30 family DUF4349 PF14257.6 gi|307595654|ref|YP_003901971.1| - 0.094 12.1 12.6 0.19 11.2 1.2 3.7 2 1 2 4 4 3 0 Domain of unknown function (DUF4349) COG5 PF10392.9 gi|307595654|ref|YP_003901971.1| - 0.099 12.8 1.6 1.3 9.2 0.5 2.9 1 1 2 4 4 2 0 Golgi transport complex subunit 5 CEP209_CC5 PF16574.5 gi|307595654|ref|YP_003901971.1| - 0.1 12.7 6.9 0.81 9.9 6.3 2.6 1 1 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 Fungal_trans_2 PF11951.8 gi|307595654|ref|YP_003901971.1| - 0.11 11.3 0.8 0.41 9.4 0.4 1.9 1 1 1 2 2 2 0 Fungal specific transcription factor domain DUF3251 PF11622.8 gi|307595654|ref|YP_003901971.1| - 0.11 12.1 0.4 25 4.5 0.0 3.2 1 1 3 4 4 3 0 Protein of unknown function (DUF3251) STAT_alpha PF01017.20 gi|307595654|ref|YP_003901971.1| - 0.12 12.3 4.7 3.4 7.5 0.4 3.4 1 1 1 2 2 2 0 STAT protein, all-alpha domain DUF1465 PF07323.12 gi|307595654|ref|YP_003901971.1| - 0.13 12.2 0.6 1.4 8.8 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) CCDC-167 PF15188.6 gi|307595654|ref|YP_003901971.1| - 0.13 12.6 18.9 6.8 7.1 5.2 4.5 1 1 3 4 4 4 0 Coiled-coil domain-containing protein 167 YabA PF06156.13 gi|307595654|ref|YP_003901971.1| - 0.14 12.9 6.5 62 4.3 6.5 3.2 1 1 0 1 1 1 0 Initiation control protein YabA Ax_dynein_light PF10211.9 gi|307595654|ref|YP_003901971.1| - 0.14 12.1 6.2 2.7 7.9 1.6 2.7 1 1 1 2 2 2 0 Axonemal dynein light chain Med4 PF10018.9 gi|307595654|ref|YP_003901971.1| - 0.15 11.7 6.7 1.9 8.1 2.0 3.2 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF489 PF04356.12 gi|307595654|ref|YP_003901971.1| - 0.2 11.7 1.6 4 7.4 1.6 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF489) HJURP_C PF12347.8 gi|307595654|ref|YP_003901971.1| - 0.2 11.7 0.2 0.77 9.8 0.1 2.0 2 0 0 2 2 1 0 Holliday junction regulator protein family C-terminal repeat MCPsignal PF00015.21 gi|307595654|ref|YP_003901971.1| - 0.2 11.4 12.1 0.085 12.7 4.8 2.8 2 1 1 3 3 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Cluap1 PF10234.9 gi|307595654|ref|YP_003901971.1| - 0.23 10.8 6.0 1.8 7.9 2.7 2.2 1 1 1 2 2 2 0 Clusterin-associated protein-1 DUF4455 PF14643.6 gi|307595654|ref|YP_003901971.1| - 0.24 10.0 4.9 0.21 10.2 2.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4455) Uds1 PF15456.6 gi|307595654|ref|YP_003901971.1| - 0.27 11.4 3.3 10 6.3 0.6 3.1 1 1 1 2 2 2 0 Up-regulated During Septation TMF_DNA_bd PF12329.8 gi|307595654|ref|YP_003901971.1| - 0.29 11.2 4.2 4 7.5 0.5 2.9 1 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Cauli_AT PF03233.13 gi|307595654|ref|YP_003901971.1| - 0.31 11.0 12.5 1.5e+02 2.2 12.4 3.0 1 1 1 2 2 2 0 Aphid transmission protein Matrilin_ccoil PF10393.9 gi|307595654|ref|YP_003901971.1| - 0.32 10.9 3.2 48 3.9 0.3 4.4 3 1 1 4 4 3 0 Trimeric coiled-coil oligomerisation domain of matrilin YojJ PF10372.9 gi|307595654|ref|YP_003901971.1| - 0.38 10.9 2.6 9.1 6.5 0.3 3.4 1 1 2 3 3 3 0 Bacterial membrane-spanning protein N-terminus Rx_N PF18052.1 gi|307595654|ref|YP_003901971.1| - 0.43 10.9 4.8 16 5.8 0.4 3.4 2 1 2 4 4 3 0 Rx N-terminal domain Dynactin_p22 PF07426.11 gi|307595654|ref|YP_003901971.1| - 0.49 10.2 10.7 5.3 6.9 2.4 3.1 2 1 1 3 3 2 0 Dynactin subunit p22 DUF3847 PF12958.7 gi|307595654|ref|YP_003901971.1| - 0.54 10.4 4.3 21 5.3 1.8 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3847) TMF_TATA_bd PF12325.8 gi|307595654|ref|YP_003901971.1| - 0.57 10.4 6.1 2.7 8.3 1.4 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Paralemmin PF03285.15 gi|307595654|ref|YP_003901971.1| - 0.59 9.7 10.8 0.24 10.9 1.9 2.8 1 1 2 3 3 3 0 Paralemmin SMODS PF18144.1 gi|307595654|ref|YP_003901971.1| - 0.64 10.2 4.7 23 5.1 0.2 3.3 1 1 1 2 2 2 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain TolA_bind_tri PF16331.5 gi|307595654|ref|YP_003901971.1| - 0.67 10.1 7.7 3.7 7.7 1.0 3.7 2 2 2 4 4 3 0 TolA binding protein trimerisation MtrG PF04210.13 gi|307595654|ref|YP_003901971.1| - 0.95 9.4 18.7 10 6.1 0.7 5.1 2 1 2 4 4 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF4315 PF14193.6 gi|307595654|ref|YP_003901971.1| - 1.3 9.1 13.1 1.9 8.6 1.7 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4315) Syntaxin_2 PF14523.6 gi|307595654|ref|YP_003901971.1| - 1.4 9.3 8.7 22 5.5 8.8 2.3 1 1 0 1 1 1 0 Syntaxin-like protein DivIC PF04977.15 gi|307595654|ref|YP_003901971.1| - 1.9 8.3 8.4 13 5.7 0.4 3.4 1 1 2 3 3 3 0 Septum formation initiator LegC3_N PF18654.1 gi|307595654|ref|YP_003901971.1| - 2 7.6 17.0 6.3 5.9 6.9 2.7 1 1 1 2 2 2 0 LegC3 N-terminal coiled-coil domain ZapB PF06005.12 gi|307595654|ref|YP_003901971.1| - 2.7 8.5 9.8 9.6 6.7 2.8 2.9 1 1 1 2 2 2 0 Cell division protein ZapB PriC PF07445.12 gi|307595654|ref|YP_003901971.1| - 3.1 7.7 10.4 57 3.6 7.8 3.0 1 1 0 1 1 1 0 Primosomal replication protein priC Sin3_corepress PF08295.12 gi|307595654|ref|YP_003901971.1| - 3.2 7.9 7.7 3.6 7.7 1.3 2.6 1 1 1 2 2 2 0 Sin3 family co-repressor DUF3782 PF12644.7 gi|307595654|ref|YP_003901971.1| - 3.5 7.8 8.4 46 4.3 0.6 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3782) Prefoldin_3 PF13758.6 gi|307595654|ref|YP_003901971.1| - 5.6 7.1 16.4 16 5.6 0.4 4.0 1 1 1 3 3 3 0 Prefoldin subunit Trns_repr_metal PF02583.17 gi|307595654|ref|YP_003901971.1| - 6.2 7.3 8.9 8.6 6.8 2.2 3.1 1 1 0 2 2 2 0 Metal-sensitive transcriptional repressor DUF3287 PF11690.8 gi|307595654|ref|YP_003901971.1| - 6.4 6.5 12.0 15 5.3 2.3 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3287) zf-C4H2 PF10146.9 gi|307595654|ref|YP_003901971.1| - 8.8 6.6 11.8 49 4.1 11.4 2.1 1 1 0 1 1 1 0 Zinc finger-containing protein PaREP1 PF05942.11 gi|307595655|ref|YP_003901972.1| - 4.7e-29 100.7 0.1 1.1e-28 99.4 0.0 1.6 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family ATPase_2 PF01637.18 gi|307595656|ref|YP_003901973.1| - 2e-58 198.0 0.0 2.6e-58 197.7 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|307595656|ref|YP_003901973.1| - 0.002 18.6 0.0 0.0054 17.1 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|307595656|ref|YP_003901973.1| - 0.0063 16.9 0.0 0.0091 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|307595656|ref|YP_003901973.1| - 0.018 15.3 0.0 0.036 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|307595656|ref|YP_003901973.1| - 0.018 15.4 0.0 0.03 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|307595656|ref|YP_003901973.1| - 0.038 13.7 0.0 0.064 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|307595656|ref|YP_003901973.1| - 0.067 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|307595656|ref|YP_003901973.1| - 0.11 11.3 0.1 3.6 6.3 0.0 2.1 1 1 1 2 2 2 0 Adenovirus IVa2 protein NACHT PF05729.12 gi|307595656|ref|YP_003901973.1| - 0.12 12.3 0.0 0.42 10.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain DAP3 PF10236.9 gi|307595656|ref|YP_003901973.1| - 0.13 11.4 0.0 0.27 10.4 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_14 PF13173.6 gi|307595656|ref|YP_003901973.1| - 0.15 12.1 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|307595656|ref|YP_003901973.1| - 0.19 12.2 0.0 0.35 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Glycos_transf_1 PF00534.20 gi|307595657|ref|YP_003901974.1| - 3e-16 59.4 0.0 6.1e-16 58.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307595657|ref|YP_003901974.1| - 1.5e-10 41.4 0.1 3.1e-10 40.3 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|307595657|ref|YP_003901974.1| - 2e-10 41.2 0.0 5.8e-10 39.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|307595657|ref|YP_003901974.1| - 4.7e-05 23.9 0.0 9.6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF2079 PF09852.9 gi|307595658|ref|YP_003901975.1| - 7.8e-27 94.2 42.4 7.8e-27 94.2 42.4 2.9 2 1 0 2 2 2 1 Predicted membrane protein (DUF2079) Methyltransf_21 PF05050.12 gi|307595659|ref|YP_003901976.1| - 2.5e-18 66.7 0.3 3.5e-18 66.2 0.3 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|307595659|ref|YP_003901976.1| - 2.3e-06 27.1 2.0 3.7e-06 26.4 2.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|307595659|ref|YP_003901976.1| - 3.7e-06 26.8 0.6 6.8e-06 26.0 0.6 1.5 1 1 0 1 1 1 1 Met-10+ like-protein DUF4525 PF15027.6 gi|307595659|ref|YP_003901976.1| - 0.025 14.3 0.2 0.057 13.1 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4525) Methyltransf_15 PF09445.10 gi|307595659|ref|YP_003901976.1| - 0.086 12.4 0.2 0.18 11.3 0.1 1.6 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Glycos_transf_2 PF00535.26 gi|307595661|ref|YP_003901978.1| - 5.2e-06 26.4 0.0 8.8e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|307595662|ref|YP_003901979.1| - 4.8e-14 52.3 0.0 1.1e-13 51.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|307595662|ref|YP_003901979.1| - 3.9e-12 46.8 0.0 6.3e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 FAM86 PF14904.6 gi|307595662|ref|YP_003901979.1| - 0.084 13.0 0.1 22 5.2 0.1 2.5 2 0 0 2 2 2 0 Family of unknown function Carbam_trans_C PF16861.5 gi|307595663|ref|YP_003901980.1| - 4.9e-63 211.7 0.0 7.6e-63 211.1 0.0 1.3 1 0 0 1 1 1 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 gi|307595663|ref|YP_003901980.1| - 2.3e-50 172.2 0.0 6e-50 170.8 0.0 1.7 1 1 0 1 1 1 1 Carbamoyltransferase N-terminus Sua5_yciO_yrdC PF01300.18 gi|307595663|ref|YP_003901980.1| - 0.045 13.3 0.0 0.14 11.7 0.0 1.8 1 1 0 1 1 1 0 Telomere recombination DUF2283 PF10049.9 gi|307595667|ref|YP_003901984.1| - 0.073 13.3 0.7 0.11 12.8 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) DUF1048 PF06304.11 gi|307595668|ref|YP_003901985.1| - 0.1 13.1 0.0 0.11 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1048) betaPIX_CC PF16523.5 gi|307595670|ref|YP_003901987.1| - 0.052 13.4 2.0 0.76 9.6 1.0 2.3 1 1 1 2 2 2 0 betaPIX coiled coil HEPN PF05168.14 gi|307595671|ref|YP_003901988.1| - 6e-31 107.0 0.1 6.9e-31 106.8 0.1 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|307595671|ref|YP_003901988.1| - 0.00073 19.4 0.1 0.0012 18.7 0.1 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.6 gi|307595671|ref|YP_003901988.1| - 0.0064 17.1 1.2 0.038 14.6 0.9 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) Vir_act_alpha_C PF10400.9 gi|307595671|ref|YP_003901988.1| - 0.017 15.8 1.1 0.94 10.2 0.4 2.2 2 0 0 2 2 2 0 Virulence activator alpha C-term TPR_2 PF07719.17 gi|307595671|ref|YP_003901988.1| - 0.073 13.2 2.9 0.77 10.0 1.6 2.9 1 1 1 2 2 2 0 Tetratricopeptide repeat Bclx_interact PF08945.10 gi|307595671|ref|YP_003901988.1| - 0.086 12.6 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain PSD3 PF07626.11 gi|307595671|ref|YP_003901988.1| - 0.18 12.3 0.1 0.18 12.3 0.1 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1587) zf-RING_9 PF13901.6 gi|307595671|ref|YP_003901988.1| - 0.19 11.7 0.0 0.23 11.4 0.0 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon NTP_transf_2 PF01909.23 gi|307595672|ref|YP_003901989.1| - 2e-06 28.0 0.0 2.7e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|307595672|ref|YP_003901989.1| - 0.00014 21.9 0.0 0.0002 21.4 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase OppC_N PF12911.7 gi|307595674|ref|YP_003901991.1| - 0.045 13.7 0.0 0.045 13.7 0.0 4.2 4 1 1 5 5 5 0 N-terminal TM domain of oligopeptide transport permease C CHB_HEX_C_1 PF13290.6 gi|307595674|ref|YP_003901991.1| - 0.29 11.2 4.1 0.13 12.3 0.5 2.2 2 0 0 2 2 2 0 Chitobiase/beta-hexosaminidase C-terminal domain Serpulina_VSP PF05540.11 gi|307595675|ref|YP_003901992.1| - 0.11 11.5 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Serpulina hyodysenteriae variable surface protein Proteasome PF00227.26 gi|307595676|ref|YP_003901993.1| - 1.7e-50 171.2 0.3 1.9e-50 171.0 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit ThiI PF02568.14 gi|307595677|ref|YP_003901994.1| - 9e-56 188.6 0.0 1.3e-55 188.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|307595677|ref|YP_003901994.1| - 9.9e-23 80.8 0.4 1.9e-22 79.9 0.4 1.5 1 0 0 1 1 1 1 THUMP domain Rhodanese PF00581.20 gi|307595677|ref|YP_003901994.1| - 1.9e-07 31.6 0.0 4.6e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Rhodanese-like domain QueC PF06508.13 gi|307595677|ref|YP_003901994.1| - 0.0026 17.3 0.0 1.2 8.6 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Endonuclease_5 PF04493.14 gi|307595678|ref|YP_003901995.1| - 1.6e-54 184.6 0.0 2e-54 184.3 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF3857 PF12969.7 gi|307595678|ref|YP_003901995.1| - 0.065 13.3 0.0 0.099 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3857) AA_permease_2 PF13520.6 gi|307595681|ref|YP_003901998.1| - 6.9e-30 104.2 50.9 6.9e-30 104.2 50.9 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|307595681|ref|YP_003901998.1| - 2.4e-29 102.3 51.5 2.4e-29 102.3 51.5 2.1 1 1 1 2 2 2 1 Amino acid permease FUSC PF04632.12 gi|307595681|ref|YP_003901998.1| - 0.19 10.2 7.2 0.46 8.9 7.2 1.6 1 0 0 1 1 1 0 Fusaric acid resistance protein family Thioredoxin_3 PF13192.6 gi|307595682|ref|YP_003901999.1| - 0.00012 22.1 0.0 0.00023 21.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Imm2 PF14426.6 gi|307595682|ref|YP_003901999.1| - 0.13 12.3 0.5 0.41 10.7 0.2 1.9 2 0 0 2 2 2 0 Immunity protein Imm2 DUF2427 PF10348.9 gi|307595683|ref|YP_003902000.1| - 0.04 13.7 4.3 0.058 13.2 4.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) DHHC PF01529.20 gi|307595683|ref|YP_003902000.1| - 1.7 8.8 3.3 0.91 9.6 1.5 1.6 1 1 1 2 2 2 0 DHHC palmitoyltransferase Band_7 PF01145.25 gi|307595684|ref|YP_003902001.1| - 1.5e-19 70.7 2.0 2.1e-19 70.2 2.0 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|307595684|ref|YP_003902001.1| - 4.5e-16 59.2 0.5 8.5e-16 58.3 0.5 1.4 1 1 0 1 1 1 1 SPFH domain-Band 7 family PaREP1 PF05942.11 gi|307595686|ref|YP_003902003.1| - 2e-23 82.5 0.1 3e-23 81.9 0.1 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Sigma70_r1_2 PF00140.20 gi|307595686|ref|YP_003902003.1| - 0.11 12.6 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 factor, region 1.2 ABC_tran PF00005.27 gi|307595687|ref|YP_003902004.1| - 3e-26 92.6 0.0 4.4e-26 92.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307595687|ref|YP_003902004.1| - 6.8e-12 45.8 0.1 4.6e-06 26.7 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|307595687|ref|YP_003902004.1| - 1.4e-08 35.5 0.2 3e-08 34.4 0.2 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|307595687|ref|YP_003902004.1| - 2.4e-08 33.7 0.2 8.9e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|307595687|ref|YP_003902004.1| - 4.5e-06 26.3 0.0 8.2e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|307595687|ref|YP_003902004.1| - 0.00027 20.8 0.0 0.00054 19.8 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|307595687|ref|YP_003902004.1| - 0.0084 16.0 0.1 0.015 15.2 0.1 1.3 1 0 0 1 1 1 1 NACHT domain AAA_30 PF13604.6 gi|307595687|ref|YP_003902004.1| - 0.0085 15.8 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF3584 PF12128.8 gi|307595687|ref|YP_003902004.1| - 0.0087 13.6 0.1 0.012 13.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_28 PF13521.6 gi|307595687|ref|YP_003902004.1| - 0.015 15.6 0.0 0.034 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|307595687|ref|YP_003902004.1| - 0.015 14.9 0.1 0.043 13.4 0.1 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|307595687|ref|YP_003902004.1| - 0.016 15.6 0.1 0.032 14.6 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|307595687|ref|YP_003902004.1| - 0.017 14.7 0.0 0.042 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|307595687|ref|YP_003902004.1| - 0.018 14.1 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_ATPase PF09818.9 gi|307595687|ref|YP_003902004.1| - 0.024 13.4 0.3 0.037 12.8 0.3 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA PF00004.29 gi|307595687|ref|YP_003902004.1| - 0.033 14.6 0.2 0.086 13.3 0.1 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|307595687|ref|YP_003902004.1| - 0.044 13.7 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|307595687|ref|YP_003902004.1| - 0.045 14.0 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|307595687|ref|YP_003902004.1| - 0.05 13.8 0.0 0.082 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|307595687|ref|YP_003902004.1| - 0.055 13.8 0.4 0.42 10.9 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|307595687|ref|YP_003902004.1| - 0.058 12.0 0.0 0.14 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|307595687|ref|YP_003902004.1| - 0.066 13.1 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|307595687|ref|YP_003902004.1| - 0.15 11.6 0.1 0.43 10.1 0.1 1.8 1 1 1 2 2 2 0 AAA domain OFeT_1 PF16955.5 gi|307595689|ref|YP_003902006.1| - 1.5e-105 351.5 14.8 1.7e-105 351.3 14.8 1.0 1 0 0 1 1 1 1 Ferrous iron uptake permease, iron-lead transporter MNHE PF01899.16 gi|307595689|ref|YP_003902006.1| - 1.3 8.7 8.9 1.4 8.6 4.0 2.2 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit PaREP1 PF05942.11 gi|307595690|ref|YP_003902007.1| - 5.6e-30 103.6 0.4 7.5e-30 103.2 0.4 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Syntaxin-6_N PF09177.11 gi|307595690|ref|YP_003902007.1| - 0.051 14.1 0.1 0.097 13.2 0.1 1.5 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Cupin_2 PF07883.11 gi|307595691|ref|YP_003902008.1| - 3.4e-21 74.7 0.0 4.4e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|307595691|ref|YP_003902008.1| - 3.8e-12 46.4 0.0 4.2e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|307595691|ref|YP_003902008.1| - 6.4e-10 39.1 0.0 8.5e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Auxin_BP PF02041.16 gi|307595691|ref|YP_003902008.1| - 8.2e-08 32.1 0.1 3.1e-07 30.2 0.1 1.8 1 1 0 1 1 1 1 Auxin binding protein Cupin_1 PF00190.22 gi|307595691|ref|YP_003902008.1| - 3e-05 23.7 0.0 3.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Cupin DMSP_lyase PF16867.5 gi|307595691|ref|YP_003902008.1| - 0.00031 20.4 0.0 0.00042 20.0 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_7 PF12973.7 gi|307595691|ref|YP_003902008.1| - 0.00042 20.2 0.0 0.00056 19.8 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Ectoine_synth PF06339.12 gi|307595691|ref|YP_003902008.1| - 0.00043 20.5 0.0 0.00052 20.2 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_3 PF05899.12 gi|307595691|ref|YP_003902008.1| - 0.0064 16.2 0.0 0.009 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|307595691|ref|YP_003902008.1| - 0.022 14.5 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Lyx_isomer PF07385.12 gi|307595691|ref|YP_003902008.1| - 0.07 12.4 0.0 2.4 7.3 0.0 2.0 1 1 1 2 2 2 0 D-lyxose isomerase Cupin_6 PF12852.7 gi|307595691|ref|YP_003902008.1| - 0.075 12.7 0.0 0.088 12.5 0.0 1.1 1 0 0 1 1 1 0 Cupin AraC_N PF06719.13 gi|307595691|ref|YP_003902008.1| - 0.079 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus Asp_Arg_Hydrox PF05118.15 gi|307595691|ref|YP_003902008.1| - 0.088 12.6 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase SLATT_1 PF18181.1 gi|307595692|ref|YP_003902009.1| - 0.0094 15.9 0.9 0.015 15.3 0.9 1.2 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain 1 ABC2_membrane_3 PF12698.7 gi|307595692|ref|YP_003902009.1| - 0.06 12.4 1.7 0.082 12.0 1.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4282 PF14110.6 gi|307595692|ref|YP_003902009.1| - 0.28 11.9 4.5 0.43 11.3 4.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF4407 PF14362.6 gi|307595692|ref|YP_003902009.1| - 0.84 8.9 2.5 1.1 8.5 2.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF983 PF06170.12 gi|307595692|ref|YP_003902009.1| - 1.4 9.3 4.6 2.6 8.5 4.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF983) FeoB_associated PF12669.7 gi|307595693|ref|YP_003902010.1| - 0.33 11.4 1.4 1.4 9.4 1.4 2.1 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein NTP_transf_2 PF01909.23 gi|307595694|ref|YP_003902011.1| - 2.5e-11 43.7 0.4 3.2e-11 43.3 0.4 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|307595694|ref|YP_003902011.1| - 7.8e-06 25.9 0.1 1.1e-05 25.4 0.1 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|307595694|ref|YP_003902011.1| - 0.00014 22.0 0.0 0.00017 21.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm HTH_48 PF17906.1 gi|307595694|ref|YP_003902011.1| - 0.049 13.8 0.0 0.34 11.1 0.0 2.1 2 0 0 2 2 2 0 HTH domain in Mos1 transposase HEPN PF05168.14 gi|307595695|ref|YP_003902012.1| - 5.7e-25 87.7 0.1 6.3e-25 87.6 0.1 1.0 1 0 0 1 1 1 1 HEPN domain DUF447 PF04289.12 gi|307595695|ref|YP_003902012.1| - 0.13 12.0 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF447) NTP_transf_2 PF01909.23 gi|307595696|ref|YP_003902013.1| - 1.5e-07 31.6 0.0 2.1e-07 31.1 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|307595696|ref|YP_003902013.1| - 3.6e-06 27.0 0.0 5.3e-06 26.4 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|307595696|ref|YP_003902013.1| - 0.16 11.8 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Glyco_transf_9 PF01075.17 gi|307595696|ref|YP_003902013.1| - 0.16 11.2 0.0 0.21 10.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) HEPN PF05168.14 gi|307595697|ref|YP_003902014.1| - 2e-31 108.6 0.5 2.2e-31 108.4 0.5 1.0 1 0 0 1 1 1 1 HEPN domain MFS_1 PF07690.16 gi|307595698|ref|YP_003902015.1| - 7.4e-45 153.4 46.5 7.4e-45 153.4 46.5 2.2 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307595698|ref|YP_003902015.1| - 1e-11 44.4 6.5 1e-11 44.4 6.5 2.8 3 0 0 3 3 3 2 Sugar (and other) transporter OATP PF03137.20 gi|307595698|ref|YP_003902015.1| - 2.4e-05 22.8 18.4 0.0065 14.8 2.0 3.4 2 1 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family AAA_23 PF13476.6 gi|307595699|ref|YP_003902016.1| - 0.011 16.2 1.6 0.013 16.1 1.6 1.0 1 0 0 1 1 1 0 AAA domain DUF3685 PF12452.8 gi|307595699|ref|YP_003902016.1| - 0.073 12.8 1.0 0.079 12.7 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3685) DUF2797 PF10977.8 gi|307595699|ref|YP_003902016.1| - 0.093 12.6 0.2 0.1 12.5 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2797) PKcGMP_CC PF16808.5 gi|307595699|ref|YP_003902016.1| - 7.6 6.5 12.7 7.8 6.4 8.2 2.9 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Glyco_hydro_1 PF00232.18 gi|307595700|ref|YP_003902017.1| - 5e-65 219.7 6.9 7.3e-57 192.8 3.4 3.0 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Glycos_transf_2 PF00535.26 gi|307595701|ref|YP_003902018.1| - 0.00096 19.0 0.0 0.001 18.9 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferase family 2 YvfG PF09628.10 gi|307595702|ref|YP_003902019.1| - 0.007 16.7 0.2 0.42 11.0 0.1 2.5 2 0 0 2 2 2 2 YvfG protein DUF4064 PF13273.6 gi|307595703|ref|YP_003902020.1| - 0.29 11.4 9.4 1.2 9.5 1.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Pox_EPC_I2-L1 PF12575.8 gi|307595703|ref|YP_003902020.1| - 1 9.6 5.4 0.69 10.2 0.9 2.4 2 0 0 2 2 2 0 Poxvirus entry protein complex L1 and I2 TMEM154 PF15102.6 gi|307595703|ref|YP_003902020.1| - 1.1 9.1 7.8 0.086 12.8 2.3 1.9 2 0 0 2 2 2 0 TMEM154 protein family Big_7 PF17957.1 gi|307595703|ref|YP_003902020.1| - 2 9.3 7.2 1 10.1 1.6 2.5 2 2 0 2 2 2 0 Bacterial Ig domain Orf78 PF06024.12 gi|307595703|ref|YP_003902020.1| - 2.2 8.6 6.5 0.85 9.9 1.8 2.1 2 0 0 2 2 2 0 Orf78 (ac78) DUF3671 PF12420.8 gi|307595703|ref|YP_003902020.1| - 2.5 8.2 7.8 8 6.6 4.2 2.1 2 0 0 2 2 2 0 Protein of unknown function Shisa PF13908.6 gi|307595703|ref|YP_003902020.1| - 5.2 7.3 7.4 11 6.2 0.7 2.1 2 0 0 2 2 2 0 Wnt and FGF inhibitory regulator TPP_enzyme_C PF02775.21 gi|307595704|ref|YP_003902021.1| - 2.7e-30 105.2 0.0 3.5e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Fer4 PF00037.27 gi|307595705|ref|YP_003902022.1| - 2.8e-11 42.8 15.0 9.9e-06 25.2 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307595705|ref|YP_003902022.1| - 4.6e-09 36.3 17.2 1e-06 28.8 8.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307595705|ref|YP_003902022.1| - 1.1e-08 35.5 5.6 0.0013 19.3 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307595705|ref|YP_003902022.1| - 1.9e-08 34.0 14.9 0.00055 19.9 4.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307595705|ref|YP_003902022.1| - 1e-07 31.6 11.0 0.0011 19.0 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307595705|ref|YP_003902022.1| - 3.6e-07 30.2 7.9 0.0013 18.8 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307595705|ref|YP_003902022.1| - 1.7e-06 28.9 6.6 0.0089 16.9 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|307595705|ref|YP_003902022.1| - 5.6e-06 26.4 12.2 0.0014 19.0 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307595705|ref|YP_003902022.1| - 1.3e-05 25.2 8.8 5e-05 23.3 9.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307595705|ref|YP_003902022.1| - 4.3e-05 23.9 6.2 0.031 14.7 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307595705|ref|YP_003902022.1| - 0.00041 20.8 11.1 0.11 13.1 11.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307595705|ref|YP_003902022.1| - 0.0013 19.2 9.9 0.12 12.9 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|307595705|ref|YP_003902022.1| - 0.0049 17.6 9.5 0.023 15.5 2.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|307595705|ref|YP_003902022.1| - 0.0073 17.1 8.0 0.42 11.5 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|307595705|ref|YP_003902022.1| - 0.059 14.3 13.4 0.69 11.0 4.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|307595705|ref|YP_003902022.1| - 0.086 13.0 6.5 2.5 8.3 0.5 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|307595705|ref|YP_003902022.1| - 0.11 12.7 2.0 0.15 12.2 2.0 1.3 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S POR PF01558.18 gi|307595706|ref|YP_003902023.1| - 1.9e-21 76.9 0.0 2.4e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase CBS PF00571.28 gi|307595707|ref|YP_003902024.1| - 1.1e-21 77.1 2.0 5.7e-12 45.9 0.9 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|307595707|ref|YP_003902024.1| - 0.047 14.0 0.2 3.5 8.0 0.1 2.6 2 1 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain ECH_1 PF00378.20 gi|307595708|ref|YP_003902025.1| - 1.2e-42 146.0 0.0 1.4e-42 145.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|307595708|ref|YP_003902025.1| - 4e-15 56.1 0.0 7.5e-15 55.3 0.0 1.5 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|307595708|ref|YP_003902025.1| - 0.19 11.6 0.0 2.8 7.9 0.0 2.1 2 0 0 2 2 2 0 Peptidase family S49 FAD_binding_4 PF01565.23 gi|307595709|ref|YP_003902026.1| - 1.8e-39 134.6 0.2 4.1e-39 133.5 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|307595709|ref|YP_003902026.1| - 5e-21 75.5 0.1 7.3e-21 74.9 0.1 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain Hydrolase_4 PF12146.8 gi|307595710|ref|YP_003902027.1| - 5e-10 39.1 0.1 3.4e-09 36.3 0.0 2.2 3 1 0 3 3 3 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|307595710|ref|YP_003902027.1| - 6.9e-09 35.7 0.0 4e-08 33.2 0.0 2.2 2 1 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|307595710|ref|YP_003902027.1| - 1.3e-08 35.7 0.1 1.9e-08 35.2 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|307595710|ref|YP_003902027.1| - 0.046 13.4 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein Abhydrolase_5 PF12695.7 gi|307595710|ref|YP_003902027.1| - 0.13 12.0 0.0 0.31 10.8 0.0 1.5 2 0 0 2 2 2 0 Alpha/beta hydrolase family Peptidase_S28 PF05577.12 gi|307595710|ref|YP_003902027.1| - 0.21 10.3 0.0 0.42 9.3 0.0 1.4 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Thermopsin PF05317.11 gi|307595711|ref|YP_003902028.1| - 3.1e-77 259.6 16.7 3.1e-77 259.6 16.7 2.8 2 2 0 2 2 2 1 Thermopsin MFS_1 PF07690.16 gi|307595712|ref|YP_003902029.1| - 2.9e-35 121.8 48.5 2.9e-35 121.8 48.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|307595712|ref|YP_003902029.1| - 0.22 10.3 28.8 0.077 11.8 14.9 2.4 1 1 1 2 2 2 0 MFS_1 like family AA_permease PF00324.21 gi|307595713|ref|YP_003902030.1| - 2.7e-34 118.6 35.6 2.7e-34 118.6 35.6 2.0 2 0 0 2 2 2 1 Amino acid permease AA_permease_2 PF13520.6 gi|307595713|ref|YP_003902030.1| - 3.9e-26 91.9 58.0 1.4e-25 90.0 57.5 1.7 1 1 0 1 1 1 1 Amino acid permease ODV-E18 PF10717.9 gi|307595713|ref|YP_003902030.1| - 0.054 13.4 0.1 0.054 13.4 0.1 4.1 4 0 0 4 4 4 0 Occlusion-derived virus envelope protein ODV-E18 Cellulase PF00150.18 gi|307595714|ref|YP_003902031.1| - 7.7e-05 22.3 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_1 PF00232.18 gi|307595714|ref|YP_003902031.1| - 0.0082 14.6 0.1 0.014 13.8 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 1 DUF4434 PF14488.6 gi|307595714|ref|YP_003902031.1| - 0.0084 16.1 0.0 0.18 11.8 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4434) Glyco_hydro_2_C PF02836.17 gi|307595714|ref|YP_003902031.1| - 0.03 13.5 0.0 0.37 9.9 0.0 2.4 2 1 0 2 2 2 0 Glycosyl hydrolases family 2, TIM barrel domain ABC_membrane PF00664.23 gi|307595715|ref|YP_003902032.1| - 6.4e-07 29.3 6.9 6.4e-07 29.3 6.9 1.9 2 0 0 2 2 2 1 ABC transporter transmembrane region Glyco_hydro_12 PF01670.16 gi|307595716|ref|YP_003902033.1| - 9.6e-12 45.3 3.3 1.2e-11 45.0 3.3 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 ABC_tran PF00005.27 gi|307595717|ref|YP_003902034.1| - 2.5e-32 112.3 0.0 3.7e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|307595717|ref|YP_003902034.1| - 1.1e-18 67.5 0.1 3.5e-18 65.9 0.0 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|307595717|ref|YP_003902034.1| - 2.7e-06 27.7 0.2 9.8e-06 25.9 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|307595717|ref|YP_003902034.1| - 0.00085 19.2 6.1 0.052 13.3 1.2 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|307595717|ref|YP_003902034.1| - 0.00092 19.6 0.0 0.0014 19.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|307595717|ref|YP_003902034.1| - 0.001 18.8 0.1 0.0022 17.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|307595717|ref|YP_003902034.1| - 0.0042 17.3 0.1 0.041 14.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|307595717|ref|YP_003902034.1| - 0.0095 15.8 0.1 0.017 15.0 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|307595717|ref|YP_003902034.1| - 0.013 16.0 0.0 0.032 14.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|307595717|ref|YP_003902034.1| - 0.02 14.1 0.1 0.27 10.4 0.0 2.2 2 1 0 2 2 2 0 G-protein alpha subunit Sigma54_activat PF00158.26 gi|307595717|ref|YP_003902034.1| - 0.025 14.3 0.0 0.32 10.7 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|307595717|ref|YP_003902034.1| - 0.034 13.3 0.0 0.082 12.1 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain DUF87 PF01935.17 gi|307595717|ref|YP_003902034.1| - 0.042 13.9 0.3 0.1 12.7 0.3 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain RNA_helicase PF00910.22 gi|307595717|ref|YP_003902034.1| - 0.052 13.9 0.0 0.096 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|307595717|ref|YP_003902034.1| - 0.057 13.3 0.2 0.12 12.2 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.6 gi|307595717|ref|YP_003902034.1| - 0.079 13.5 0.1 0.17 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|307595717|ref|YP_003902034.1| - 0.087 12.5 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|307595717|ref|YP_003902034.1| - 0.34 9.5 0.9 7.1 5.1 0.0 2.5 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|307595718|ref|YP_003902035.1| - 4.5e-25 88.8 0.0 6.1e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|307595718|ref|YP_003902035.1| - 1.2e-19 70.5 0.0 2e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|307595718|ref|YP_003902035.1| - 1.3e-05 25.2 3.6 0.003 17.4 0.4 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|307595718|ref|YP_003902035.1| - 0.00016 21.3 0.0 0.00032 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|307595718|ref|YP_003902035.1| - 0.0032 17.2 0.1 0.02 14.6 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein PhoH PF02562.16 gi|307595718|ref|YP_003902035.1| - 0.01 15.3 0.1 0.022 14.2 0.1 1.7 1 1 0 1 1 1 0 PhoH-like protein SMC_N PF02463.19 gi|307595718|ref|YP_003902035.1| - 0.019 14.4 0.3 0.062 12.7 0.3 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|307595718|ref|YP_003902035.1| - 0.041 13.6 0.1 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|307595718|ref|YP_003902035.1| - 0.046 14.2 0.3 0.088 13.3 0.1 1.5 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|307595718|ref|YP_003902035.1| - 0.055 12.1 0.1 0.88 8.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|307595718|ref|YP_003902035.1| - 0.064 13.5 0.8 0.33 11.2 0.8 2.1 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|307595718|ref|YP_003902035.1| - 0.085 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|307595718|ref|YP_003902035.1| - 0.093 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|307595718|ref|YP_003902035.1| - 0.16 11.9 0.0 0.34 10.8 0.0 1.6 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.22 gi|307595719|ref|YP_003902036.1| - 4.8e-14 52.5 24.5 4.8e-14 52.5 24.5 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|307595719|ref|YP_003902036.1| - 0.0016 18.4 0.1 0.0016 18.4 0.1 4.3 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|307595720|ref|YP_003902037.1| - 2.6e-28 99.0 24.7 2.6e-28 99.0 24.7 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|307595721|ref|YP_003902038.1| - 2.9e-39 135.1 12.2 4.3e-39 134.6 12.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF3302 PF11742.8 gi|307595721|ref|YP_003902038.1| - 0.52 10.5 8.0 20 5.4 5.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3302) ASFV_J13L PF05568.11 gi|307595721|ref|YP_003902038.1| - 3 7.5 9.0 0.68 9.7 3.8 2.3 2 0 0 2 2 2 0 African swine fever virus J13L protein Stevor PF17410.2 gi|307595721|ref|YP_003902038.1| - 5.3 6.5 6.6 8.4 5.8 6.6 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Orf78 PF06024.12 gi|307595721|ref|YP_003902038.1| - 6.8 7.1 10.0 0.053 13.8 1.7 1.8 2 0 0 2 2 2 0 Orf78 (ac78) Transp_cyt_pur PF02133.15 gi|307595722|ref|YP_003902039.1| - 1.6e-37 129.3 46.3 3.7e-37 128.1 46.3 1.6 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin Methyltransf_21 PF05050.12 gi|307595723|ref|YP_003902040.1| - 5.8e-08 33.0 0.1 1.7e-07 31.4 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|307595723|ref|YP_003902040.1| - 0.00019 21.2 0.4 0.00056 19.7 0.4 1.8 1 1 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|307595723|ref|YP_003902040.1| - 0.093 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 SNARE_assoc PF09335.11 gi|307595723|ref|YP_003902040.1| - 0.099 13.1 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 SNARE associated Golgi protein Methyltransf_25 PF13649.6 gi|307595723|ref|YP_003902040.1| - 0.11 13.2 0.0 0.45 11.2 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Lactamase_B PF00753.27 gi|307595724|ref|YP_003902041.1| - 2.9e-26 92.7 0.0 4.1e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|307595724|ref|YP_003902041.1| - 0.011 15.2 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HSM3_N PF18795.1 gi|307595724|ref|YP_003902041.1| - 0.02 14.3 0.1 0.036 13.5 0.1 1.3 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain Beta-lactamase PF00144.24 gi|307595725|ref|YP_003902042.1| - 1.5e-63 215.0 0.0 2.5e-63 214.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.6 gi|307595725|ref|YP_003902042.1| - 5e-33 113.1 0.3 9.5e-33 112.2 0.3 1.5 1 0 0 1 1 1 1 Pab87 octamerisation domain Cupin_2 PF07883.11 gi|307595727|ref|YP_003902044.1| - 4.8e-17 61.4 0.0 6.2e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|307595727|ref|YP_003902044.1| - 3.3e-09 36.8 0.0 4.8e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|307595727|ref|YP_003902044.1| - 7.9e-08 32.3 0.0 9.3e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|307595727|ref|YP_003902044.1| - 3e-07 30.2 0.0 5.2e-07 29.4 0.0 1.3 1 1 0 1 1 1 1 Cupin Ectoine_synth PF06339.12 gi|307595727|ref|YP_003902044.1| - 7.8e-05 22.9 0.0 8.8e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_3 PF05899.12 gi|307595727|ref|YP_003902044.1| - 0.00032 20.3 0.0 0.00053 19.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|307595727|ref|YP_003902044.1| - 0.00098 19.0 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain DMSP_lyase PF16867.5 gi|307595727|ref|YP_003902044.1| - 0.0059 16.3 0.0 0.0068 16.1 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase PCO_ADO PF07847.12 gi|307595727|ref|YP_003902044.1| - 0.0071 15.8 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 PCO_ADO CENP-C_C PF11699.8 gi|307595727|ref|YP_003902044.1| - 0.0096 16.1 0.0 0.013 15.7 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like AraC_binding_2 PF14525.6 gi|307595727|ref|YP_003902044.1| - 0.063 13.0 0.0 0.082 12.6 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain EutQ PF06249.12 gi|307595727|ref|YP_003902044.1| - 0.12 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cupin_6 PF12852.7 gi|307595727|ref|YP_003902044.1| - 0.15 11.7 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Cupin Aminotran_1_2 PF00155.21 gi|307595728|ref|YP_003902045.1| - 2.9e-74 250.4 0.0 3.3e-74 250.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|307595728|ref|YP_003902045.1| - 5.3e-12 45.7 0.0 8.9e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|307595728|ref|YP_003902045.1| - 2.6e-08 33.2 0.0 7.2e-08 31.8 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|307595728|ref|YP_003902045.1| - 4.1e-07 28.9 0.0 7e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|307595728|ref|YP_003902045.1| - 0.0076 15.6 0.0 0.018 14.4 0.0 1.6 2 1 0 2 2 2 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|307595728|ref|YP_003902045.1| - 0.025 13.3 0.0 0.058 12.1 0.0 1.6 1 1 1 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain DUF3226 PF11536.8 gi|307595728|ref|YP_003902045.1| - 0.041 13.5 0.0 5.4 6.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3226) Phage_CII PF05269.11 gi|307595730|ref|YP_003902047.1| - 0.068 13.4 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CII protein PI-PLC-X PF00388.19 gi|307595730|ref|YP_003902047.1| - 0.15 11.7 0.1 0.23 11.1 0.1 1.3 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain PLDc_2 PF13091.6 gi|307595731|ref|YP_003902048.1| - 3.8e-28 98.0 0.1 5e-16 58.8 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|307595731|ref|YP_003902048.1| - 2.1e-06 27.7 2.4 0.0036 17.4 0.1 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif PP_kinase_C PF13090.6 gi|307595731|ref|YP_003902048.1| - 0.0011 18.4 0.2 0.17 11.3 0.0 2.3 2 0 0 2 2 2 2 Polyphosphate kinase C-terminal domain 2 YukC PF10140.9 gi|307595731|ref|YP_003902048.1| - 0.0048 15.8 0.4 0.0077 15.1 0.4 1.2 1 0 0 1 1 1 1 WXG100 protein secretion system (Wss), protein YukC Regulator_TrmB PF11495.8 gi|307595731|ref|YP_003902048.1| - 0.014 14.6 0.1 0.062 12.5 0.0 1.9 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB RIFIN PF02009.16 gi|307595731|ref|YP_003902048.1| - 0.13 12.1 0.6 0.21 11.4 0.6 1.4 1 0 0 1 1 1 0 Rifin DUF2615 PF11027.8 gi|307595731|ref|YP_003902048.1| - 0.17 12.0 0.1 0.36 11.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2615) FixQ PF05545.11 gi|307595731|ref|YP_003902048.1| - 0.17 11.8 0.0 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF3671 PF12420.8 gi|307595731|ref|YP_003902048.1| - 3.1 7.9 6.0 1.4 9.1 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function adh_short_C2 PF13561.6 gi|307595732|ref|YP_003902049.1| - 9.8e-74 247.8 0.6 1.1e-73 247.6 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|307595732|ref|YP_003902049.1| - 6.7e-66 221.5 0.7 8.1e-66 221.2 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|307595732|ref|YP_003902049.1| - 4.1e-15 56.1 0.1 5.7e-15 55.7 0.1 1.2 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.19 gi|307595732|ref|YP_003902049.1| - 0.0011 18.0 0.1 0.0015 17.6 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family DUF1776 PF08643.10 gi|307595732|ref|YP_003902049.1| - 0.014 14.8 0.0 0.64 9.3 0.0 2.1 2 0 0 2 2 2 0 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|307595732|ref|YP_003902049.1| - 0.035 13.6 0.1 0.047 13.2 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|307595732|ref|YP_003902049.1| - 0.06 13.2 0.8 0.17 11.7 0.3 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Tox-REase-7 PF15649.6 gi|307595732|ref|YP_003902049.1| - 0.085 13.2 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 7 ABC_tran PF00005.27 gi|307595733|ref|YP_003902050.1| - 7.8e-30 104.2 0.0 1.2e-29 103.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter DUF4162 PF13732.6 gi|307595733|ref|YP_003902050.1| - 1.8e-13 51.0 0.4 4e-13 49.9 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|307595733|ref|YP_003902050.1| - 3.2e-13 50.2 0.0 1.6e-07 31.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|307595733|ref|YP_003902050.1| - 0.0011 19.5 0.0 0.0018 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|307595733|ref|YP_003902050.1| - 0.012 15.4 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|307595733|ref|YP_003902050.1| - 0.012 15.2 0.1 0.023 14.4 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|307595733|ref|YP_003902050.1| - 0.028 14.9 0.0 0.27 11.7 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|307595733|ref|YP_003902050.1| - 0.037 13.7 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|307595733|ref|YP_003902050.1| - 0.051 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|307595733|ref|YP_003902050.1| - 0.064 13.5 0.0 0.16 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|307595733|ref|YP_003902050.1| - 0.081 12.9 0.2 2.2 8.3 0.0 2.6 2 1 0 3 3 3 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|307595733|ref|YP_003902050.1| - 0.13 12.0 1.1 2 8.2 0.0 2.5 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|307595733|ref|YP_003902050.1| - 0.13 12.5 0.0 0.24 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|307595733|ref|YP_003902050.1| - 0.16 12.2 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase TsaE PF02367.17 gi|307595733|ref|YP_003902050.1| - 0.17 11.9 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|307595733|ref|YP_003902050.1| - 0.18 11.9 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Abhydrolase_8 PF06259.12 gi|307595733|ref|YP_003902050.1| - 0.19 11.4 0.0 0.7 9.5 0.0 1.8 2 0 0 2 2 2 0 Alpha/beta hydrolase ABC2_membrane PF01061.24 gi|307595734|ref|YP_003902051.1| - 2.2e-34 118.7 21.2 2.2e-34 118.7 21.2 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|307595734|ref|YP_003902051.1| - 4.3e-14 52.4 28.9 5.3e-14 52.1 28.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|307595734|ref|YP_003902051.1| - 4.5e-08 32.7 20.2 5.1e-08 32.5 19.2 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|307595734|ref|YP_003902051.1| - 0.00062 19.8 12.1 0.00062 19.8 12.1 2.4 1 1 1 2 2 2 1 ABC-2 family transporter protein T2SSF PF00482.23 gi|307595736|ref|YP_003902053.1| - 1.2e-16 60.8 2.3 9.8e-10 38.5 0.1 3.5 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF677 PF05055.12 gi|307595736|ref|YP_003902053.1| - 0.037 12.9 1.1 0.06 12.2 0.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF677) CbiA PF01656.23 gi|307595737|ref|YP_003902054.1| - 6.9e-10 39.1 0.0 1e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|307595737|ref|YP_003902054.1| - 8e-08 32.4 1.4 2e-07 31.1 1.4 1.6 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|307595737|ref|YP_003902054.1| - 3.2e-07 30.1 1.2 7.6e-05 22.3 0.0 2.4 3 0 0 3 3 3 2 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|307595737|ref|YP_003902054.1| - 0.023 14.0 0.3 0.041 13.1 0.2 1.5 1 1 0 1 1 1 0 ATPase MipZ CBP_BcsQ PF06564.12 gi|307595737|ref|YP_003902054.1| - 0.047 13.2 0.1 0.16 11.4 0.2 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|307595737|ref|YP_003902054.1| - 0.05 12.8 0.1 0.077 12.2 0.1 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_25 PF13481.6 gi|307595737|ref|YP_003902054.1| - 0.17 11.4 0.2 0.36 10.4 0.2 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|307595737|ref|YP_003902054.1| - 0.18 11.2 0.1 0.24 10.8 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein Mntp PF02659.15 gi|307595738|ref|YP_003902055.1| - 0.00043 20.1 0.9 0.00045 20.0 0.9 1.0 1 0 0 1 1 1 1 Putative manganese efflux pump Sensor PF13796.6 gi|307595738|ref|YP_003902055.1| - 0.0066 16.5 0.0 0.0072 16.4 0.0 1.0 1 0 0 1 1 1 1 Putative sensor Herpes_LMP2 PF07415.11 gi|307595738|ref|YP_003902055.1| - 0.013 14.4 0.2 0.014 14.3 0.2 1.0 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein MgtC PF02308.16 gi|307595738|ref|YP_003902055.1| - 0.13 12.7 3.2 0.15 12.4 3.2 1.1 1 0 0 1 1 1 0 MgtC family Halogen_Hydrol PF10112.9 gi|307595738|ref|YP_003902055.1| - 0.15 12.1 0.1 0.16 11.9 0.1 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF3098 PF11297.8 gi|307595738|ref|YP_003902055.1| - 0.2 11.3 8.4 2.2 7.9 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) IncE PF17627.2 gi|307595738|ref|YP_003902055.1| - 0.24 11.4 1.9 0.25 11.3 1.9 1.1 1 0 0 1 1 1 0 Inclusion membrane protein E DUF973 PF06157.11 gi|307595738|ref|YP_003902055.1| - 0.29 10.1 12.1 0.33 10.0 12.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) PGPGW PF09656.10 gi|307595738|ref|YP_003902055.1| - 0.31 10.6 6.7 2.6 7.6 0.2 2.2 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) Claudin_2 PF13903.6 gi|307595738|ref|YP_003902055.1| - 0.85 9.3 4.0 1.1 9.0 4.0 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction RseC_MucC PF04246.12 gi|307595738|ref|YP_003902055.1| - 1.1 9.2 3.1 1.3 9.0 3.1 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF872 PF05915.12 gi|307595738|ref|YP_003902055.1| - 2.1 8.5 4.6 2.7 8.2 4.6 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF3040 PF11239.8 gi|307595738|ref|YP_003902055.1| - 8.2 6.8 8.5 39 4.6 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) RNase_HII PF01351.18 gi|307595739|ref|YP_003902056.1| - 2.4e-45 154.8 0.0 2.7e-45 154.6 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII 3Beta_HSD PF01073.19 gi|307595740|ref|YP_003902057.1| - 0.049 12.6 0.1 0.078 12.0 0.1 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF4129 PF13559.6 gi|307595740|ref|YP_003902057.1| - 0.21 11.8 0.0 0.33 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) Transglut_core PF01841.19 gi|307595741|ref|YP_003902058.1| - 1.4e-09 38.4 0.0 2.2e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily AAA_3 PF07726.11 gi|307595742|ref|YP_003902059.1| - 7.3e-64 213.5 0.0 1.1e-63 212.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|307595742|ref|YP_003902059.1| - 5.4e-20 71.0 0.5 9.7e-20 70.2 0.5 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|307595742|ref|YP_003902059.1| - 1.2e-13 51.2 0.0 2.3e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|307595742|ref|YP_003902059.1| - 3.4e-05 23.1 0.0 0.00033 19.8 0.0 2.3 1 1 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|307595742|ref|YP_003902059.1| - 7e-05 23.3 0.0 0.00027 21.4 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|307595742|ref|YP_003902059.1| - 0.00071 19.4 0.0 0.0068 16.2 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|307595742|ref|YP_003902059.1| - 0.00085 19.1 0.0 0.002 17.8 0.0 1.6 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|307595742|ref|YP_003902059.1| - 0.0018 17.7 0.2 2 7.7 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|307595742|ref|YP_003902059.1| - 0.013 15.9 0.1 0.055 13.9 0.0 2.0 2 2 0 3 3 3 0 AAA ATPase domain AAA_lid_8 PF17868.1 gi|307595742|ref|YP_003902059.1| - 0.029 14.3 0.1 0.052 13.4 0.1 1.4 1 0 0 1 1 1 0 AAA lid domain DUF58 PF01882.18 gi|307595743|ref|YP_003902060.1| - 0.00076 19.7 0.0 0.0021 18.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF58 Acyl-CoA_dh_1 PF00441.24 gi|307595745|ref|YP_003902062.1| - 2.2e-46 157.8 0.3 3.3e-46 157.2 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|307595745|ref|YP_003902062.1| - 2.5e-28 99.0 0.0 5.7e-28 97.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|307595745|ref|YP_003902062.1| - 1.9e-23 82.4 0.0 3.7e-23 81.5 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|307595745|ref|YP_003902062.1| - 1.6e-17 64.1 0.0 2.5e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|307595746|ref|YP_003902063.1| - 1e-40 139.4 2.7 1.5e-40 138.9 2.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|307595746|ref|YP_003902063.1| - 6.5e-24 84.0 0.0 1e-23 83.3 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|307595746|ref|YP_003902063.1| - 3.9e-22 79.0 0.0 8.2e-22 78.0 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|307595746|ref|YP_003902063.1| - 2.4e-16 60.2 0.2 3.9e-16 59.5 0.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain FapA PF03961.13 gi|307595746|ref|YP_003902063.1| - 0.015 14.0 0.0 0.022 13.4 0.0 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A HpaB_N PF11794.8 gi|307595746|ref|YP_003902063.1| - 0.077 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal KIP1 PF07765.12 gi|307595746|ref|YP_003902063.1| - 0.15 12.2 0.0 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 KIP1-like protein UDG PF03167.19 gi|307595747|ref|YP_003902064.1| - 1.2e-34 119.6 0.0 1.4e-34 119.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily PUA PF01472.20 gi|307595748|ref|YP_003902065.1| - 4.8e-16 58.5 1.2 7e-16 57.9 1.2 1.3 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|307595748|ref|YP_003902065.1| - 1.1e-12 47.8 0.0 1.8e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase UPF0113 PF03657.13 gi|307595748|ref|YP_003902065.1| - 1.1e-05 25.5 0.3 6.1e-05 23.2 0.1 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain TruB-C_2 PF09157.11 gi|307595748|ref|YP_003902065.1| - 6.7e-05 22.8 0.1 0.00014 21.8 0.1 1.7 1 0 0 1 1 1 1 Pseudouridine synthase II TruB, C-terminal PUA_3 PF17785.1 gi|307595748|ref|YP_003902065.1| - 0.0013 18.5 0.0 0.0028 17.4 0.0 1.5 1 0 0 1 1 1 1 PUA-like domain DUF5016 PF16408.5 gi|307595748|ref|YP_003902065.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5016) tRNA-synt_1b PF00579.25 gi|307595749|ref|YP_003902066.1| - 1.1e-26 93.8 0.0 5.1e-26 91.7 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Peptidase_M19 PF01244.21 gi|307595750|ref|YP_003902067.1| - 1.1e-81 274.5 0.0 1.2e-81 274.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) FBPase_3 PF01950.16 gi|307595751|ref|YP_003902068.1| - 3.3e-174 579.2 0.0 4e-174 579.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase DUF1908 PF08926.11 gi|307595751|ref|YP_003902068.1| - 0.13 11.4 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) DNA_methylase PF00145.17 gi|307595752|ref|YP_003902069.1| - 1.7e-47 162.4 0.0 8.4e-32 110.8 0.0 2.1 2 0 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|307595752|ref|YP_003902069.1| - 0.044 13.4 0.1 0.098 12.2 0.1 1.5 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase RNA_POL_M_15KD PF02150.16 gi|307595753|ref|YP_003902070.1| - 0.0058 16.5 0.1 0.0058 16.5 0.1 2.0 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit Spore_YhaL PF14147.6 gi|307595753|ref|YP_003902070.1| - 0.07 12.8 2.6 1.4 8.6 1.0 2.6 1 1 1 2 2 2 0 Sporulation protein YhaL Abhydrolase_1 PF00561.20 gi|307595755|ref|YP_003902072.1| - 3e-14 53.3 0.0 2.7e-10 40.3 0.1 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|307595755|ref|YP_003902072.1| - 2.3e-10 41.5 0.0 7.9e-05 23.4 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|307595755|ref|YP_003902072.1| - 1e-05 24.9 0.0 0.011 15.0 0.0 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 UPF0227 PF05728.12 gi|307595755|ref|YP_003902072.1| - 0.0025 17.8 0.0 0.0034 17.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Abhydrolase_5 PF12695.7 gi|307595755|ref|YP_003902072.1| - 0.012 15.3 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family DLH PF01738.18 gi|307595755|ref|YP_003902072.1| - 0.2 11.2 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family ABC_tran PF00005.27 gi|307595757|ref|YP_003902074.1| - 0.00022 21.8 0.0 0.00031 21.3 0.0 1.6 1 1 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|307595757|ref|YP_003902074.1| - 0.0018 18.6 0.0 0.0033 17.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|307595757|ref|YP_003902074.1| - 0.002 17.9 0.0 0.18 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|307595757|ref|YP_003902074.1| - 0.0082 15.4 0.0 0.018 14.3 0.0 1.6 1 0 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|307595757|ref|YP_003902074.1| - 0.014 15.8 0.0 0.021 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain SpecificRecomb PF10136.9 gi|307595757|ref|YP_003902074.1| - 0.014 13.7 0.0 2.8 6.1 0.0 2.1 2 0 0 2 2 2 0 Site-specific recombinase AAA_30 PF13604.6 gi|307595757|ref|YP_003902074.1| - 0.032 13.9 0.0 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|307595757|ref|YP_003902074.1| - 0.036 14.0 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|307595757|ref|YP_003902074.1| - 0.037 13.5 0.0 0.077 12.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Pox_A32 PF04665.12 gi|307595757|ref|YP_003902074.1| - 0.038 13.5 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein RsgA_GTPase PF03193.16 gi|307595757|ref|YP_003902074.1| - 0.041 13.8 0.0 0.084 12.8 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|307595757|ref|YP_003902074.1| - 0.061 13.2 0.2 0.19 11.6 0.1 1.8 2 0 0 2 2 2 0 NACHT domain AAA_29 PF13555.6 gi|307595757|ref|YP_003902074.1| - 0.081 12.7 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain GatB_Yqey PF02637.18 gi|307595757|ref|YP_003902074.1| - 0.15 11.9 0.2 13 5.7 0.0 2.9 2 1 1 3 3 3 0 GatB domain PduV-EutP PF10662.9 gi|307595757|ref|YP_003902074.1| - 0.2 11.4 1.6 0.96 9.2 0.1 2.7 2 1 1 3 3 3 0 Ethanolamine utilisation - propanediol utilisation PaREP1 PF05942.11 gi|307595758|ref|YP_003902075.1| - 1.4e-19 70.1 0.0 2.5e-19 69.3 0.0 1.5 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family MFS_1 PF07690.16 gi|307595759|ref|YP_003902076.1| - 7.5e-44 150.1 64.9 8e-35 120.4 19.9 2.8 2 1 0 2 2 2 2 Major Facilitator Superfamily MR_MLE_C PF13378.6 gi|307595760|ref|YP_003902077.1| - 9.2e-61 205.2 0.1 1.3e-60 204.7 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|307595760|ref|YP_003902077.1| - 4e-15 56.1 0.0 7.6e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AP_endonuc_2 PF01261.24 gi|307595760|ref|YP_003902077.1| - 0.014 14.9 0.0 0.63 9.4 0.0 2.2 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF2250 PF10007.9 gi|307595761|ref|YP_003902078.1| - 0.00038 20.5 0.0 0.0013 18.8 0.0 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Sun2_CC2 PF18580.1 gi|307595761|ref|YP_003902078.1| - 0.013 15.7 0.0 0.038 14.2 0.0 1.9 2 0 0 2 2 2 0 SUN2 coiled coil domain 2 DUF4423 PF14394.6 gi|307595761|ref|YP_003902078.1| - 0.073 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Peripla_BP_2 PF01497.18 gi|307595762|ref|YP_003902079.1| - 1.4e-15 57.5 0.0 2e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Pan3_PK PF18101.1 gi|307595764|ref|YP_003902081.1| - 0.08 12.9 0.0 0.14 12.1 0.0 1.4 1 1 0 1 1 1 0 Pan3 Pseudokinase domain Aldedh PF00171.22 gi|307595765|ref|YP_003902082.1| - 5.5e-168 559.2 0.1 6.6e-168 559.0 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|307595765|ref|YP_003902082.1| - 0.011 15.2 0.0 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) DUF779 PF05610.11 gi|307595767|ref|YP_003902084.1| - 1.6e-21 76.4 0.0 1.9e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF779) PCMT PF01135.19 gi|307595768|ref|YP_003902085.1| - 1.1e-66 224.6 0.0 1.3e-66 224.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|307595768|ref|YP_003902085.1| - 3.9e-07 30.0 0.0 6.2e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|307595768|ref|YP_003902085.1| - 2.4e-06 27.4 0.0 3.3e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.6 gi|307595768|ref|YP_003902085.1| - 6.4e-05 23.9 0.0 0.0001 23.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307595768|ref|YP_003902085.1| - 6.8e-05 23.5 0.0 0.00012 22.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|307595768|ref|YP_003902085.1| - 0.00074 18.7 0.0 0.0011 18.2 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.6 gi|307595768|ref|YP_003902085.1| - 0.015 15.1 0.0 0.026 14.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|307595768|ref|YP_003902085.1| - 0.017 14.9 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) CMAS PF02353.20 gi|307595768|ref|YP_003902085.1| - 0.018 14.4 0.0 0.024 13.9 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.17 gi|307595768|ref|YP_003902085.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Methyltransf_11 PF08241.12 gi|307595768|ref|YP_003902085.1| - 0.022 15.4 0.0 0.047 14.3 0.0 1.6 2 0 0 2 2 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|307595768|ref|YP_003902085.1| - 0.029 14.0 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Met_10 PF02475.16 gi|307595768|ref|YP_003902085.1| - 0.07 12.9 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein MFS_1 PF07690.16 gi|307595769|ref|YP_003902086.1| - 3e-43 148.1 60.8 3e-43 148.1 60.8 3.2 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307595769|ref|YP_003902086.1| - 4e-07 29.3 13.2 4e-07 29.3 13.2 3.8 2 1 1 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|307595769|ref|YP_003902086.1| - 0.0017 16.8 8.8 0.0017 16.8 8.8 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1 PF07690.16 gi|307595770|ref|YP_003902087.1| - 1.4e-26 93.3 56.4 1.4e-26 93.3 56.4 1.7 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307595770|ref|YP_003902087.1| - 8.8e-15 54.5 42.1 2.7e-10 39.7 19.1 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter Bunya_G2 PF03563.13 gi|307595770|ref|YP_003902087.1| - 0.47 9.7 3.0 1.1 8.5 3.0 1.5 1 0 0 1 1 1 0 Bunyavirus glycoprotein G2 PNP_UDP_1 PF01048.20 gi|307595771|ref|YP_003902088.1| - 5.2e-39 133.9 1.5 6.4e-39 133.6 1.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Zn-ribbon_8 PF09723.10 gi|307595772|ref|YP_003902089.1| - 0.05 13.7 1.3 0.091 12.9 1.3 1.4 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|307595772|ref|YP_003902089.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|307595772|ref|YP_003902089.1| - 0.37 10.3 0.1 0.37 10.3 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain DEAD PF00270.29 gi|307595773|ref|YP_003902090.1| - 9.5e-26 90.6 0.0 1.6e-25 89.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|307595773|ref|YP_003902090.1| - 1.2e-17 64.2 0.0 4.4e-15 56.0 0.0 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|307595773|ref|YP_003902090.1| - 3.9e-13 49.9 0.0 1.7e-12 47.9 0.0 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|307595773|ref|YP_003902090.1| - 0.028 14.4 0.0 0.046 13.7 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit HTH_45 PF14947.6 gi|307595773|ref|YP_003902090.1| - 0.12 12.4 0.0 0.36 10.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix Flavi_DEAD PF07652.14 gi|307595773|ref|YP_003902090.1| - 0.17 11.8 0.4 2.8 7.9 0.0 2.7 4 0 0 4 4 4 0 Flavivirus DEAD domain Kazal_2 PF07648.15 gi|307595773|ref|YP_003902090.1| - 0.33 11.1 3.5 0.64 10.2 3.5 1.4 1 0 0 1 1 1 0 Kazal-type serine protease inhibitor domain LPG_synthase_TM PF03706.13 gi|307595774|ref|YP_003902091.1| - 5.3e-18 65.6 35.3 8.7e-18 64.9 35.3 1.3 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Isochorismatase PF00857.20 gi|307595776|ref|YP_003902093.1| - 5.9e-44 150.3 0.1 7.3e-44 150.0 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family TTSSLRR PF12468.8 gi|307595776|ref|YP_003902093.1| - 0.16 12.2 0.0 0.36 11.1 0.0 1.6 2 0 0 2 2 2 0 Type III secretion system leucine rich repeat protein HMG-CoA_red PF00368.18 gi|307595778|ref|YP_003902095.1| - 1.3e-130 435.7 5.0 1.5e-130 435.5 5.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CagZ PF09053.10 gi|307595778|ref|YP_003902095.1| - 0.012 15.2 0.3 0.15 11.7 0.0 2.2 2 0 0 2 2 2 0 CagZ Thiolase_N PF00108.23 gi|307595779|ref|YP_003902096.1| - 8.9e-11 41.6 0.1 3.2e-10 39.8 0.1 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|307595779|ref|YP_003902096.1| - 8.6e-07 28.6 0.2 6.1e-06 25.9 0.1 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ploopntkinase1 PF18748.1 gi|307595779|ref|YP_003902096.1| - 0.016 14.7 0.1 0.025 14.1 0.1 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase1 ACP_syn_III PF08545.10 gi|307595779|ref|YP_003902096.1| - 0.099 12.5 0.5 0.37 10.7 0.1 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|307595780|ref|YP_003902097.1| - 8.7e-11 41.7 0.1 1.4e-10 41.0 0.1 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|307595780|ref|YP_003902097.1| - 4.4e-09 36.0 2.3 6.8e-09 35.4 2.3 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ATPase PF06745.13 gi|307595782|ref|YP_003902099.1| - 5.5e-30 104.4 0.1 7e-28 97.5 0.1 2.5 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|307595782|ref|YP_003902099.1| - 2.1e-06 27.4 0.9 2.7e-05 23.8 0.7 2.7 2 1 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|307595782|ref|YP_003902099.1| - 0.00068 19.1 0.0 0.0015 17.9 0.0 1.8 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|307595782|ref|YP_003902099.1| - 0.0015 18.3 0.1 0.03 14.0 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein GvpD PF07088.11 gi|307595782|ref|YP_003902099.1| - 0.0017 17.0 0.0 0.0029 16.3 0.0 1.3 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_16 PF13191.6 gi|307595782|ref|YP_003902099.1| - 0.0034 17.8 0.1 0.0052 17.2 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain RecA PF00154.21 gi|307595782|ref|YP_003902099.1| - 0.0059 16.1 0.2 0.49 9.8 0.0 2.3 2 1 0 2 2 2 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|307595782|ref|YP_003902099.1| - 0.014 14.7 0.0 0.097 11.9 0.0 2.3 2 1 0 2 2 2 0 Rad51 Inhibitor_I69 PF13734.6 gi|307595782|ref|YP_003902099.1| - 0.033 14.6 0.1 0.1 13.0 0.1 1.8 2 0 0 2 2 1 0 Spi protease inhibitor DUF2075 PF09848.9 gi|307595782|ref|YP_003902099.1| - 0.039 13.2 0.0 0.059 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MMR_HSR1 PF01926.23 gi|307595782|ref|YP_003902099.1| - 0.047 13.8 0.0 0.16 12.1 0.0 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase SafA PF17073.5 gi|307595782|ref|YP_003902099.1| - 0.09 12.7 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Two-component-system connector protein AAA_22 PF13401.6 gi|307595782|ref|YP_003902099.1| - 0.17 12.2 0.2 0.43 10.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain Elong_Iki1 PF10483.9 gi|307595782|ref|YP_003902099.1| - 0.19 11.2 0.1 4.3 6.7 0.0 2.1 1 1 0 2 2 2 0 Elongator subunit Iki1 DUF2209 PF09974.9 gi|307595783|ref|YP_003902100.1| - 0.0092 16.3 3.9 0.76 10.1 0.2 3.5 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2209) FlgN PF05130.12 gi|307595783|ref|YP_003902100.1| - 0.26 11.8 3.5 0.62 10.6 3.5 1.6 1 0 0 1 1 1 0 FlgN protein BLOC1_2 PF10046.9 gi|307595783|ref|YP_003902100.1| - 0.28 11.5 3.6 0.84 10.0 0.1 3.1 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 APG12 PF04110.13 gi|307595783|ref|YP_003902100.1| - 0.34 11.3 2.7 1.4 9.4 1.7 2.5 2 0 0 2 2 2 0 Ubiquitin-like autophagy protein Apg12 Vac_Fusion PF02346.16 gi|307595783|ref|YP_003902100.1| - 0.42 10.3 3.5 5.5 6.7 0.0 3.4 3 0 0 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 Wx5_PLAF3D7 PF09688.10 gi|307595783|ref|YP_003902100.1| - 5 7.1 13.9 0.089 12.8 4.1 3.0 3 1 1 4 4 4 0 Protein of unknown function (Wx5_PLAF3D7) DUF1771 PF08590.10 gi|307595783|ref|YP_003902100.1| - 5.6 7.4 6.9 12 6.4 0.7 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1771) GlutR_dimer PF00745.20 gi|307595783|ref|YP_003902100.1| - 9.3 6.8 8.6 60 4.2 3.3 3.5 3 1 0 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain EamA PF00892.20 gi|307595784|ref|YP_003902101.1| - 3.2e-17 63.0 43.2 1.4e-11 44.7 16.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|307595784|ref|YP_003902101.1| - 0.00018 20.7 3.3 0.00018 20.7 3.3 2.5 2 1 0 2 2 2 1 Magnesium transporter NIPA Glyco_hydro_15 PF00723.21 gi|307595785|ref|YP_003902102.1| - 9.1e-09 34.6 0.3 5.7e-07 28.7 0.6 2.3 2 0 0 2 2 2 2 Glycosyl hydrolases family 15 Pilin_N PF07790.11 gi|307595785|ref|YP_003902102.1| - 2.4 9.1 9.1 0.21 12.5 3.2 2.2 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal KH_7 PF17214.3 gi|307595786|ref|YP_003902103.1| - 4.4e-24 84.2 1.0 1.2e-23 82.8 1.0 1.8 1 0 0 1 1 1 1 KH domain Beta-Casp PF10996.8 gi|307595786|ref|YP_003902103.1| - 1.6e-22 79.9 0.0 5.1e-22 78.3 0.0 1.9 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|307595786|ref|YP_003902103.1| - 3.5e-16 58.9 0.1 1.2e-15 57.1 0.0 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|307595786|ref|YP_003902103.1| - 1.7e-14 54.3 0.6 6.9e-14 52.3 0.4 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|307595786|ref|YP_003902103.1| - 7.1e-14 51.7 0.0 1.6e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|307595786|ref|YP_003902103.1| - 2.5e-09 37.0 0.0 7.8e-09 35.3 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain YolD PF08863.10 gi|307595786|ref|YP_003902103.1| - 0.032 14.3 0.2 13 5.9 0.0 3.6 3 0 0 3 3 3 0 YolD-like protein Lactamase_B_3 PF13483.6 gi|307595786|ref|YP_003902103.1| - 0.037 13.9 0.0 0.094 12.6 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain LAGLIDADG_3 PF14528.6 gi|307595787|ref|YP_003902104.1| - 0.002 18.4 0.2 0.67 10.3 0.1 3.0 3 0 0 3 3 3 2 LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.6 gi|307595787|ref|YP_003902104.1| - 0.003 17.6 0.2 0.15 12.2 0.0 3.2 3 1 0 3 3 3 1 WhiA LAGLIDADG-like domain Asp_protease_2 PF13650.6 gi|307595789|ref|YP_003902106.1| - 5.4e-07 30.2 0.0 1.1e-06 29.2 0.0 1.5 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|307595789|ref|YP_003902106.1| - 0.0011 19.5 0.0 0.0018 18.8 0.0 1.4 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease AbiEi_4 PF13338.6 gi|307595790|ref|YP_003902107.1| - 0.078 13.1 0.0 0.23 11.6 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin FmdA_AmdA PF03069.15 gi|307595792|ref|YP_003902109.1| - 2.5e-08 33.2 0.1 3e-08 32.9 0.1 1.0 1 0 0 1 1 1 1 Acetamidase/Formamidase family SH3_2 PF07653.17 gi|307595792|ref|YP_003902109.1| - 0.1 12.3 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Variant SH3 domain Lysis_col PF02402.16 gi|307595792|ref|YP_003902109.1| - 0.14 11.8 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Lysis protein AA_permease PF00324.21 gi|307595793|ref|YP_003902110.1| - 1.2e-05 24.1 2.1 1.3e-05 24.1 2.1 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|307595793|ref|YP_003902110.1| - 0.0061 15.4 2.4 0.0066 15.3 2.4 1.1 1 0 0 1 1 1 1 Amino acid permease HTH_39 PF14090.6 gi|307595794|ref|YP_003902111.1| - 0.047 13.4 0.0 0.14 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_5 PF07728.14 gi|307595795|ref|YP_003902112.1| - 1.5e-11 44.5 0.0 3.7e-09 36.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|307595795|ref|YP_003902112.1| - 4.1e-08 33.8 0.2 9.2e-07 29.4 0.2 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|307595795|ref|YP_003902112.1| - 1.9e-06 28.3 0.0 6.9e-06 26.5 0.0 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|307595795|ref|YP_003902112.1| - 0.00012 22.3 0.0 0.00022 21.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|307595795|ref|YP_003902112.1| - 0.00027 20.3 0.0 0.00064 19.0 0.0 1.6 2 0 0 2 2 2 1 TIP49 P-loop domain RuvB_N PF05496.12 gi|307595795|ref|YP_003902112.1| - 0.00034 20.4 0.0 0.00069 19.4 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|307595795|ref|YP_003902112.1| - 0.0021 18.6 1.5 0.0067 17.0 0.1 2.5 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|307595795|ref|YP_003902112.1| - 0.0061 16.3 0.0 0.019 14.7 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|307595795|ref|YP_003902112.1| - 0.02 15.2 0.1 0.085 13.1 0.1 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|307595795|ref|YP_003902112.1| - 0.026 13.9 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|307595795|ref|YP_003902112.1| - 0.062 13.2 0.0 1.4 8.8 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|307595795|ref|YP_003902112.1| - 0.066 12.8 0.1 0.62 9.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|307595795|ref|YP_003902112.1| - 0.079 12.1 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.12 gi|307595795|ref|YP_003902112.1| - 0.081 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|307595795|ref|YP_003902112.1| - 0.097 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 NTPase Roc PF08477.13 gi|307595795|ref|YP_003902112.1| - 0.15 12.3 0.1 0.45 10.7 0.1 1.8 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase RNA_helicase PF00910.22 gi|307595795|ref|YP_003902112.1| - 0.17 12.3 0.0 0.73 10.2 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|307595795|ref|YP_003902112.1| - 0.2 11.2 0.3 0.39 10.2 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region CRISPR_Cas6 PF10040.9 gi|307595796|ref|YP_003902113.1| - 2e-09 38.0 0.1 4.4e-09 36.9 0.1 1.6 1 1 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 HD PF01966.22 gi|307595797|ref|YP_003902114.1| - 0.0006 20.0 0.3 0.0016 18.7 0.2 1.8 1 1 0 1 1 1 1 HD domain Helicase_C PF00271.31 gi|307595798|ref|YP_003902115.1| - 4.6e-12 46.3 0.6 1.1e-11 45.1 0.6 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|307595798|ref|YP_003902115.1| - 1.3e-10 41.3 0.1 3.5e-09 36.7 0.0 2.7 3 1 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|307595798|ref|YP_003902115.1| - 3.2e-05 24.0 0.0 6.8e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Cas_Cas5d PF09704.10 gi|307595800|ref|YP_003902117.1| - 1.8e-05 24.8 0.0 0.00011 22.1 0.0 2.0 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.16 gi|307595801|ref|YP_003902118.1| - 2.2e-43 148.3 0.0 2.9e-43 147.9 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Tricorn_C1 PF14684.6 gi|307595802|ref|YP_003902119.1| - 0.11 12.5 0.1 5.8 7.1 0.0 2.3 1 1 1 2 2 2 0 Tricorn protease C1 domain Abi_C PF14355.6 gi|307595802|ref|YP_003902119.1| - 0.29 11.3 1.4 1.6 8.8 0.1 2.2 2 0 0 2 2 2 0 Abortive infection C-terminus Penicillinase_R PF03965.16 gi|307595803|ref|YP_003902120.1| - 5.9e-05 23.4 0.0 9.3e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 gi|307595803|ref|YP_003902120.1| - 0.00077 19.3 0.2 0.0053 16.6 0.2 2.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|307595803|ref|YP_003902120.1| - 0.0046 16.8 0.0 0.17 11.8 0.0 2.4 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|307595803|ref|YP_003902120.1| - 0.038 14.2 0.3 0.097 12.9 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TBPIP PF07106.13 gi|307595803|ref|YP_003902120.1| - 0.083 12.8 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain MarR PF01047.22 gi|307595803|ref|YP_003902120.1| - 0.15 12.0 0.0 0.76 9.7 0.0 1.9 2 0 0 2 2 2 0 MarR family Mnd1 PF03962.15 gi|307595803|ref|YP_003902120.1| - 0.18 12.1 0.0 0.31 11.4 0.0 1.3 1 0 0 1 1 1 0 Mnd1 HTH domain Cas_Cas4 PF01930.17 gi|307595805|ref|YP_003902122.1| - 3.6e-17 62.9 2.6 5.2e-17 62.4 2.6 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|307595805|ref|YP_003902122.1| - 9e-12 45.4 0.5 2.4e-11 44.1 0.1 1.7 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Dna2 PF08696.11 gi|307595805|ref|YP_003902122.1| - 0.0043 16.9 3.7 0.45 10.3 0.2 2.7 2 1 0 2 2 2 2 DNA replication factor Dna2 CRISPR_Cas2 PF09827.9 gi|307595806|ref|YP_003902123.1| - 3.6e-15 55.9 0.2 4e-15 55.7 0.2 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|307595807|ref|YP_003902124.1| - 1.2e-61 208.4 0.0 1.5e-61 208.1 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Csa1 PF06023.12 gi|307595808|ref|YP_003902125.1| - 3.7e-59 200.5 0.0 4e-57 193.8 0.0 2.0 1 1 0 1 1 1 1 CRISPR-associated exonuclease Csa1 Cas_Cas4 PF01930.17 gi|307595808|ref|YP_003902125.1| - 0.00024 21.2 0.0 0.14 12.3 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 Dna2 PF08696.11 gi|307595808|ref|YP_003902125.1| - 0.0061 16.4 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 DNA replication factor Dna2 GIY-YIG PF01541.24 gi|307595809|ref|YP_003902126.1| - 0.027 14.7 0.0 0.054 13.8 0.0 1.5 1 0 0 1 1 1 0 GIY-YIG catalytic domain Lac_bphage_repr PF06543.12 gi|307595809|ref|YP_003902126.1| - 0.25 11.4 0.6 0.78 9.8 0.1 1.9 2 1 0 2 2 2 0 Lactococcus bacteriophage repressor Peptidase_A4 PF01828.17 gi|307595810|ref|YP_003902127.1| - 4.3e-33 114.5 6.0 5.2e-33 114.3 6.0 1.1 1 0 0 1 1 1 1 Peptidase A4 family CdiI_2 PF18593.1 gi|307595810|ref|YP_003902127.1| - 0.12 13.1 0.0 0.18 12.5 0.0 1.3 1 0 0 1 1 1 0 CdiI immunity protein Myco_19_kDa PF05481.12 gi|307595810|ref|YP_003902127.1| - 0.67 10.2 4.8 6.7 7.0 1.2 3.2 2 1 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen AhpC-TSA PF00578.21 gi|307595811|ref|YP_003902128.1| - 7.2e-41 139.0 0.0 8.2e-41 138.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|307595811|ref|YP_003902128.1| - 6.7e-27 94.0 0.0 8.1e-27 93.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|307595811|ref|YP_003902128.1| - 1.3e-06 28.4 0.0 2.2e-06 27.6 0.0 1.5 1 1 0 1 1 1 1 SCO1/SenC GSHPx PF00255.19 gi|307595811|ref|YP_003902128.1| - 1.3e-05 24.7 0.0 4.4e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 Glutathione peroxidase AhpC-TSA_2 PF13911.6 gi|307595811|ref|YP_003902128.1| - 0.006 16.7 0.0 0.0072 16.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Lipocalin_2 PF08212.12 gi|307595811|ref|YP_003902128.1| - 0.048 13.6 0.0 0.08 12.9 0.0 1.7 1 1 0 1 1 1 0 Lipocalin-like domain Thioredoxin_8 PF13905.6 gi|307595811|ref|YP_003902128.1| - 0.11 12.8 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like RTC PF01137.21 gi|307595813|ref|YP_003902130.1| - 3.7e-85 284.6 0.1 4.2e-85 284.5 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|307595813|ref|YP_003902130.1| - 2.9e-28 98.4 0.2 4.9e-28 97.7 0.2 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Sugar_tr PF00083.24 gi|307595814|ref|YP_003902131.1| - 3.8e-34 118.3 31.9 6.4e-24 84.6 8.0 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|307595814|ref|YP_003902131.1| - 3e-23 82.3 80.4 3.6e-22 78.8 48.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|307595814|ref|YP_003902131.1| - 6.2e-05 22.5 21.6 6.2e-05 22.5 21.6 1.5 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB YrhC PF14143.6 gi|307595814|ref|YP_003902131.1| - 1 9.5 5.2 2.2 8.4 1.3 3.3 2 0 0 2 2 2 0 YrhC-like protein NUDIX PF00293.28 gi|307595815|ref|YP_003902132.1| - 4.6e-19 68.8 1.1 5.9e-19 68.4 0.6 1.4 2 0 0 2 2 2 1 NUDIX domain NUDIX_4 PF14815.6 gi|307595815|ref|YP_003902132.1| - 0.011 15.7 0.0 0.02 14.9 0.0 1.7 1 1 0 1 1 1 0 NUDIX domain Polyketide_cyc2 PF10604.9 gi|307595817|ref|YP_003902134.1| - 2.6e-05 24.5 0.0 3.8e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|307595817|ref|YP_003902134.1| - 6.7e-05 23.1 0.0 7.6e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Sugar_tr PF00083.24 gi|307595818|ref|YP_003902135.1| - 1.9e-47 162.2 25.1 2.4e-47 161.8 25.1 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|307595818|ref|YP_003902135.1| - 2.5e-38 131.9 82.6 1.6e-33 116.1 43.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Hydrolase_6 PF13344.6 gi|307595819|ref|YP_003902136.1| - 4.2e-20 71.7 0.0 9e-19 67.5 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|307595819|ref|YP_003902136.1| - 4.5e-20 71.5 0.0 9e-20 70.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|307595819|ref|YP_003902136.1| - 1.2e-07 32.3 0.0 7.5e-07 29.6 0.0 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|307595819|ref|YP_003902136.1| - 1.9e-07 31.3 0.0 9.6e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|307595819|ref|YP_003902136.1| - 0.0019 17.8 0.0 0.0043 16.7 0.0 1.5 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase RibD_C PF01872.17 gi|307595819|ref|YP_003902136.1| - 0.0019 18.0 0.0 0.0052 16.6 0.0 1.6 2 0 0 2 2 2 1 RibD C-terminal domain DUF1967 PF09269.11 gi|307595819|ref|YP_003902136.1| - 0.089 12.7 0.0 21 5.1 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1967) DUF2120 PF09893.9 gi|307595820|ref|YP_003902137.1| - 0.02 15.0 0.1 0.027 14.6 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) PPR PF01535.20 gi|307595820|ref|YP_003902137.1| - 0.25 11.7 1.3 14 6.2 0.1 2.6 2 0 0 2 2 2 0 PPR repeat TPR_16 PF13432.6 gi|307595821|ref|YP_003902138.1| - 0.017 15.7 1.0 0.075 13.7 0.0 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|307595821|ref|YP_003902138.1| - 0.03 15.1 0.1 0.084 13.7 0.0 1.8 1 1 1 2 2 2 0 Tetratricopeptide repeat Tower PF09121.10 gi|307595821|ref|YP_003902138.1| - 0.038 14.2 0.9 0.06 13.6 0.0 1.8 2 0 0 2 2 2 0 Tower Ribosomal_L38e PF01781.18 gi|307595822|ref|YP_003902139.1| - 0.00033 20.7 0.4 0.00041 20.4 0.4 1.2 1 0 0 1 1 1 1 Ribosomal L38e protein family Sigma70_ner PF04546.13 gi|307595822|ref|YP_003902139.1| - 0.093 12.6 0.0 0.096 12.6 0.0 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region FAD_binding_3 PF01494.19 gi|307595823|ref|YP_003902140.1| - 6.1e-16 58.6 0.5 7.1e-06 25.5 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.24 gi|307595823|ref|YP_003902140.1| - 8.9e-06 25.5 0.3 0.00044 19.9 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|307595823|ref|YP_003902140.1| - 3.6e-05 23.2 0.0 0.00017 20.9 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|307595823|ref|YP_003902140.1| - 5e-05 23.4 0.1 0.00032 20.9 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|307595823|ref|YP_003902140.1| - 0.00062 18.9 0.1 0.0074 15.4 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|307595823|ref|YP_003902140.1| - 0.013 14.4 0.0 0.048 12.5 0.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.21 gi|307595823|ref|YP_003902140.1| - 0.023 14.1 0.1 0.048 13.0 0.1 1.5 2 0 0 2 2 2 0 ThiF family NAD_binding_9 PF13454.6 gi|307595823|ref|YP_003902140.1| - 0.026 14.5 0.0 0.064 13.3 0.0 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding Thi4 PF01946.17 gi|307595823|ref|YP_003902140.1| - 0.033 13.4 0.3 0.13 11.5 0.1 1.9 2 0 0 2 2 2 0 Thi4 family HI0933_like PF03486.14 gi|307595823|ref|YP_003902140.1| - 0.039 12.7 0.0 0.055 12.2 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein TrkA_N PF02254.18 gi|307595823|ref|YP_003902140.1| - 0.073 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain polyprenyl_synt PF00348.17 gi|307595824|ref|YP_003902141.1| - 3e-45 154.3 0.0 3.8e-45 154.0 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Phi-29_GP3 PF05435.11 gi|307595824|ref|YP_003902141.1| - 0.046 13.2 0.1 0.06 12.8 0.1 1.2 1 0 0 1 1 1 0 Phi-29 DNA terminal protein GP3 RHH_1 PF01402.21 gi|307595825|ref|YP_003902142.1| - 1.9e-05 24.4 0.4 7e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RRF_GI PF12614.8 gi|307595825|ref|YP_003902142.1| - 0.14 12.3 0.5 0.27 11.4 0.4 1.5 1 1 0 1 1 1 0 Ribosome recycling factor Protoglobin PF11563.8 gi|307595826|ref|YP_003902143.1| - 2e-18 66.8 0.0 2.7e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Protoglobin Copper-bind PF00127.20 gi|307595827|ref|YP_003902144.1| - 9.4e-06 26.0 0.1 3e-05 24.4 0.1 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SoxE PF06525.11 gi|307595827|ref|YP_003902144.1| - 6.2e-05 22.5 9.6 8.6e-05 22.1 2.2 3.3 3 1 0 3 3 3 1 Sulfocyanin (SoxE) domain Cu-oxidase_3 PF07732.15 gi|307595827|ref|YP_003902144.1| - 0.031 14.3 3.3 0.032 14.2 1.3 1.9 2 0 0 2 2 2 0 Multicopper oxidase DUF4083 PF13314.6 gi|307595828|ref|YP_003902145.1| - 0.0064 16.4 0.8 0.0076 16.2 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4083) EphA2_TM PF14575.6 gi|307595828|ref|YP_003902145.1| - 0.013 16.4 0.1 0.015 16.1 0.1 1.1 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain HemY_N PF07219.13 gi|307595828|ref|YP_003902145.1| - 0.032 14.4 0.2 0.039 14.1 0.2 1.1 1 0 0 1 1 1 0 HemY protein N-terminus Baculo_11_kDa PF06143.11 gi|307595828|ref|YP_003902145.1| - 0.05 13.2 0.0 0.058 13.0 0.0 1.0 1 0 0 1 1 1 0 Baculovirus 11 kDa family DUF4834 PF16118.5 gi|307595828|ref|YP_003902145.1| - 0.055 14.4 0.2 0.066 14.2 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) TMEM156 PF15106.6 gi|307595828|ref|YP_003902145.1| - 0.066 12.6 1.3 0.077 12.4 1.3 1.0 1 0 0 1 1 1 0 TMEM156 protein family Glycophorin_A PF01102.18 gi|307595828|ref|YP_003902145.1| - 0.11 12.8 0.1 0.13 12.5 0.1 1.1 1 0 0 1 1 1 0 Glycophorin A ODV-E18 PF10717.9 gi|307595828|ref|YP_003902145.1| - 0.16 11.8 0.8 0.2 11.6 0.8 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF5385 PF17359.2 gi|307595828|ref|YP_003902145.1| - 0.16 11.5 0.1 0.19 11.3 0.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5385) WSS_VP PF12175.8 gi|307595828|ref|YP_003902145.1| - 0.22 11.0 0.1 0.23 10.9 0.1 1.0 1 0 0 1 1 1 0 White spot syndrome virus structural envelope protein VP DUF2244 PF10003.9 gi|307595828|ref|YP_003902145.1| - 0.27 10.9 2.4 0.32 10.7 2.4 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) ASFV_J13L PF05568.11 gi|307595828|ref|YP_003902145.1| - 0.29 10.8 0.3 0.31 10.8 0.3 1.1 1 0 0 1 1 1 0 African swine fever virus J13L protein Ycf1 PF05758.12 gi|307595828|ref|YP_003902145.1| - 0.57 8.0 2.7 0.66 7.8 2.7 1.0 1 0 0 1 1 1 0 Ycf1 Syndecan PF01034.20 gi|307595828|ref|YP_003902145.1| - 1.4 8.9 4.7 2 8.4 4.7 1.1 1 0 0 1 1 1 0 Syndecan domain DUF2207 PF09972.9 gi|307595828|ref|YP_003902145.1| - 1.7 7.3 4.4 1.8 7.2 4.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2873 PF11395.8 gi|307595828|ref|YP_003902145.1| - 3 7.8 8.1 4.4 7.2 8.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2873) MarR_2 PF12802.7 gi|307595829|ref|YP_003902146.1| - 3.5e-06 26.8 0.0 5.5e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|307595829|ref|YP_003902146.1| - 1.7e-05 24.6 0.5 4.3e-05 23.3 0.2 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|307595829|ref|YP_003902146.1| - 0.00086 18.8 0.0 0.0016 18.0 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|307595829|ref|YP_003902146.1| - 0.0053 16.7 0.1 0.0099 15.8 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|307595829|ref|YP_003902146.1| - 0.015 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|307595829|ref|YP_003902146.1| - 0.091 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|307595829|ref|YP_003902146.1| - 0.1 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FAA_hydrolase PF01557.18 gi|307595830|ref|YP_003902147.1| - 1.3e-70 237.5 0.0 1.6e-70 237.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Pyr_redox_2 PF07992.14 gi|307595831|ref|YP_003902148.1| - 2.1e-35 122.4 0.7 2.6e-35 122.1 0.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|307595831|ref|YP_003902148.1| - 7.7e-10 38.5 2.7 2.5e-06 27.0 0.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|307595831|ref|YP_003902148.1| - 3.6e-09 36.7 4.6 0.002 17.8 0.0 3.1 3 0 0 3 3 3 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|307595831|ref|YP_003902148.1| - 8e-08 32.4 1.0 1.2e-05 25.4 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|307595831|ref|YP_003902148.1| - 2.8e-07 31.0 8.7 0.00084 19.9 1.8 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|307595831|ref|YP_003902148.1| - 3e-06 26.6 5.9 0.14 11.2 0.3 3.9 4 0 0 4 4 4 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|307595831|ref|YP_003902148.1| - 3.9e-05 23.1 0.1 0.13 11.6 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|307595831|ref|YP_003902148.1| - 8.4e-05 21.4 4.0 0.0013 17.5 0.2 2.7 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|307595831|ref|YP_003902148.1| - 0.00029 20.2 0.9 0.0039 16.5 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain Shikimate_DH PF01488.20 gi|307595831|ref|YP_003902148.1| - 0.00042 20.4 0.9 0.41 10.7 0.2 2.9 3 0 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase FAD_oxidored PF12831.7 gi|307595831|ref|YP_003902148.1| - 0.00072 19.0 2.9 0.12 11.7 0.7 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|307595831|ref|YP_003902148.1| - 0.0022 17.3 0.5 0.0061 15.8 0.1 1.9 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|307595831|ref|YP_003902148.1| - 0.0024 17.8 1.8 0.054 13.4 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|307595831|ref|YP_003902148.1| - 0.0068 15.5 7.7 0.18 10.8 0.3 2.8 2 1 1 3 3 3 2 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|307595831|ref|YP_003902148.1| - 0.067 13.2 0.7 0.3 11.1 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|307595831|ref|YP_003902148.1| - 0.093 12.0 0.0 4.8 6.4 0.0 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase DUF89 PF01937.19 gi|307595833|ref|YP_003902150.1| - 7e-19 68.0 0.4 1.6e-17 63.6 0.4 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF89 Glyco_trans_4_4 PF13579.6 gi|307595833|ref|YP_003902150.1| - 0.0012 19.3 0.0 0.0018 18.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DoxD PF04173.13 gi|307595833|ref|YP_003902150.1| - 0.013 15.4 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 TQO small subunit DoxD IF-2B PF01008.17 gi|307595834|ref|YP_003902151.1| - 1.2e-22 80.5 0.0 3.8e-21 75.5 0.0 2.2 1 1 0 1 1 1 1 Initiation factor 2 subunit family CxxCxxCC PF03692.15 gi|307595835|ref|YP_003902152.1| - 9.2e-11 42.3 1.4 1.3e-10 41.9 1.4 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DegT_DnrJ_EryC1 PF01041.17 gi|307595836|ref|YP_003902153.1| - 3.2e-121 405.0 0.0 4.1e-121 404.7 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|307595836|ref|YP_003902153.1| - 3.1e-07 29.9 0.0 4.8e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|307595836|ref|YP_003902153.1| - 1.1e-06 27.9 1.0 1.5e-05 24.1 0.2 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|307595836|ref|YP_003902153.1| - 1.2e-05 24.8 0.0 1.8e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|307595836|ref|YP_003902153.1| - 0.00029 19.5 0.1 0.00043 18.9 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.19 gi|307595836|ref|YP_003902153.1| - 0.061 11.9 0.2 0.099 11.2 0.2 1.3 1 0 0 1 1 1 0 Serine hydroxymethyltransferase Cren7 PF11520.8 gi|307595837|ref|YP_003902154.1| - 1.1e-13 50.8 1.5 1.5e-13 50.5 1.5 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 PRC PF05239.16 gi|307595838|ref|YP_003902155.1| - 3.2e-05 23.9 0.5 8e-05 22.6 0.5 1.7 1 0 0 1 1 1 1 PRC-barrel domain ISG65-75 PF11727.8 gi|307595838|ref|YP_003902155.1| - 0.00064 19.0 0.2 0.00076 18.8 0.2 1.1 1 0 0 1 1 1 1 Invariant surface glycoprotein CdvA PF18822.1 gi|307595838|ref|YP_003902155.1| - 0.0023 17.8 10.4 0.052 13.4 7.5 2.3 1 1 1 2 2 2 2 CdvA-like coiled-coil domain MukB PF04310.12 gi|307595838|ref|YP_003902155.1| - 0.0024 17.7 0.8 0.0024 17.7 0.8 1.4 2 0 0 2 2 2 1 MukB N-terminal CorA PF01544.18 gi|307595838|ref|YP_003902155.1| - 0.011 15.1 4.7 0.016 14.5 4.7 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MuF_C PF18819.1 gi|307595838|ref|YP_003902155.1| - 0.018 15.0 0.2 0.053 13.5 0.2 1.9 1 1 0 1 1 1 0 Phage MuF-C-terminal domain NPV_P10 PF05531.12 gi|307595838|ref|YP_003902155.1| - 0.019 15.4 2.0 4.5 7.8 2.0 3.1 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein MlaD PF02470.20 gi|307595838|ref|YP_003902155.1| - 0.034 14.4 0.2 0.053 13.8 0.2 1.4 1 0 0 1 1 1 0 MlaD protein DUF4041 PF13250.6 gi|307595838|ref|YP_003902155.1| - 0.06 13.2 0.3 0.25 11.3 0.0 2.3 2 1 1 3 3 2 0 Domain of unknown function (DUF4041) SesA PF17107.5 gi|307595838|ref|YP_003902155.1| - 0.07 13.3 0.8 0.44 10.7 0.3 2.0 1 1 1 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases BshC PF10079.9 gi|307595838|ref|YP_003902155.1| - 0.076 11.7 0.2 0.095 11.4 0.2 1.1 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC Peptidase_S29 PF02907.15 gi|307595838|ref|YP_003902155.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease Glycoprot_B_PH2 PF17417.2 gi|307595838|ref|YP_003902155.1| - 0.14 12.5 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B PH-like domain Baculo_p24 PF05073.12 gi|307595838|ref|YP_003902155.1| - 0.22 11.3 3.0 2.1 8.1 0.3 2.3 1 1 1 2 2 2 0 Baculovirus P24 capsid protein Rx_N PF18052.1 gi|307595838|ref|YP_003902155.1| - 0.26 11.6 5.6 4.9 7.5 2.1 3.1 1 1 2 3 3 3 0 Rx N-terminal domain Spc7 PF08317.11 gi|307595838|ref|YP_003902155.1| - 0.32 9.8 4.9 0.32 9.8 3.2 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein FliX PF10768.9 gi|307595838|ref|YP_003902155.1| - 1 9.9 4.8 0.43 11.1 1.7 1.9 1 1 1 2 2 2 0 Class II flagellar assembly regulator TSC22 PF01166.18 gi|307595838|ref|YP_003902155.1| - 1 9.7 3.8 3.4 8.0 0.1 2.5 2 0 0 2 2 2 0 TSC-22/dip/bun family Snapin_Pallidin PF14712.6 gi|307595838|ref|YP_003902155.1| - 1.1 9.7 7.3 0.26 11.7 1.8 2.5 2 1 0 2 2 2 0 Snapin/Pallidin CCDC-167 PF15188.6 gi|307595838|ref|YP_003902155.1| - 7.5 7.0 13.3 2.7 8.4 6.1 2.4 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 Lar_restr_allev PF14354.6 gi|307595839|ref|YP_003902156.1| - 0.0013 19.1 0.1 0.0013 19.0 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-trcl PF13451.6 gi|307595839|ref|YP_003902156.1| - 0.0031 17.4 0.8 0.079 12.9 0.1 2.1 2 0 0 2 2 2 1 Probable zinc-ribbon domain Cys_rich_KTR PF14205.6 gi|307595839|ref|YP_003902156.1| - 0.16 11.8 3.3 0.45 10.3 3.3 1.8 1 1 0 1 1 1 0 Cysteine-rich KTR DUF3797 PF12677.7 gi|307595839|ref|YP_003902156.1| - 0.18 11.7 2.7 2.6 8.0 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf_UBZ PF18439.1 gi|307595839|ref|YP_003902156.1| - 0.25 11.0 1.6 5.8 6.6 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger RimK PF08443.11 gi|307595840|ref|YP_003902157.1| - 1e-26 93.7 0.0 1.3e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|307595840|ref|YP_003902157.1| - 2.8e-16 59.4 0.0 1.6e-15 57.0 0.1 1.9 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|307595840|ref|YP_003902157.1| - 2.5e-10 40.6 0.1 3.6e-10 40.1 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|307595840|ref|YP_003902157.1| - 9.5e-08 31.6 0.2 8.9e-05 21.9 0.0 3.0 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|307595840|ref|YP_003902157.1| - 1.4e-06 27.7 0.0 0.0088 15.3 0.0 2.9 1 1 0 2 2 2 2 YheC/D like ATP-grasp Baculo_11_kDa PF06143.11 gi|307595841|ref|YP_003902158.1| - 0.063 12.9 9.8 0.26 10.9 0.8 3.2 3 0 0 3 3 3 0 Baculovirus 11 kDa family SIT PF15330.6 gi|307595841|ref|YP_003902158.1| - 1.2 9.6 0.0 1.2 9.6 0.0 2.1 3 0 0 3 3 3 0 SHP2-interacting transmembrane adaptor protein, SIT DUF4328 PF14219.6 gi|307595841|ref|YP_003902158.1| - 1.3 8.5 5.1 32 4.0 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4328) SirB PF04247.12 gi|307595841|ref|YP_003902158.1| - 3.4 7.8 14.6 1 9.5 7.3 2.7 2 1 0 2 2 2 0 Invasion gene expression up-regulator, SirB YlaC PF10777.9 gi|307595841|ref|YP_003902158.1| - 4.5 7.1 10.4 3.5 7.4 0.9 3.0 3 0 0 3 3 3 0 Inner membrane protein YlaC DUF3180 PF11377.8 gi|307595841|ref|YP_003902158.1| - 6.8 6.8 12.3 0.73 10.0 2.6 2.9 1 1 1 3 3 3 0 Protein of unknown function (DUF3180) zf-ribbon_3 PF13248.6 gi|307595842|ref|YP_003902159.1| - 0.00014 21.1 0.8 0.087 12.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|307595842|ref|YP_003902159.1| - 0.0031 17.4 1.0 1.4 8.9 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|307595842|ref|YP_003902159.1| - 0.0032 17.0 1.2 0.85 9.2 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|307595842|ref|YP_003902159.1| - 0.0053 17.4 1.4 0.97 10.2 0.1 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 gi|307595842|ref|YP_003902159.1| - 0.0065 16.4 0.4 1.1 9.3 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|307595842|ref|YP_003902159.1| - 0.0065 16.2 2.0 0.092 12.6 0.2 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger DUF3797 PF12677.7 gi|307595842|ref|YP_003902159.1| - 0.0069 16.2 0.4 2.4 8.1 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3797) NRDD PF13597.6 gi|307595842|ref|YP_003902159.1| - 0.0078 15.1 0.2 0.0089 14.9 0.2 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|307595842|ref|YP_003902159.1| - 0.0094 16.1 0.2 3 8.0 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|307595842|ref|YP_003902159.1| - 0.011 15.4 1.0 1.1 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|307595842|ref|YP_003902159.1| - 0.013 15.5 1.3 0.77 9.8 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_15 PF17032.5 gi|307595842|ref|YP_003902159.1| - 0.014 16.1 0.1 0.017 15.9 0.1 1.1 1 0 0 1 1 1 0 zinc-ribbon family zf-TFIIB PF13453.6 gi|307595842|ref|YP_003902159.1| - 0.014 14.7 0.2 2.2 7.7 0.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger IBR PF01485.21 gi|307595842|ref|YP_003902159.1| - 0.019 15.2 0.1 0.025 14.8 0.1 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zf-LITAF-like PF10601.9 gi|307595842|ref|YP_003902159.1| - 0.032 14.5 0.4 5.2 7.4 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Terminase_GpA PF05876.12 gi|307595842|ref|YP_003902159.1| - 0.037 12.6 0.0 0.038 12.5 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-NADH-PPase PF09297.11 gi|307595842|ref|YP_003902159.1| - 0.039 13.6 2.0 4.2 7.1 0.3 2.6 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TackOD1 PF18551.1 gi|307595842|ref|YP_003902159.1| - 0.04 13.6 1.1 0.16 11.6 1.1 1.7 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 zf-ACC PF17848.1 gi|307595842|ref|YP_003902159.1| - 0.041 14.0 3.8 0.4 10.8 0.4 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DNA_ligase_ZBD PF03119.16 gi|307595842|ref|YP_003902159.1| - 0.043 13.8 1.6 0.49 10.5 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|307595842|ref|YP_003902159.1| - 0.047 13.7 1.3 1.4 9.0 1.8 2.0 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_9 PF14369.6 gi|307595842|ref|YP_003902159.1| - 0.052 13.8 0.3 12 6.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|307595842|ref|YP_003902159.1| - 0.07 13.1 1.6 0.52 10.3 1.5 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|307595842|ref|YP_003902159.1| - 0.076 13.1 0.3 4.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Auto_anti-p27 PF06677.12 gi|307595842|ref|YP_003902159.1| - 0.078 13.2 0.7 12 6.1 0.0 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF35_N PF12172.8 gi|307595842|ref|YP_003902159.1| - 0.14 12.1 1.1 4.7 7.2 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Mss51 PF13824.6 gi|307595842|ref|YP_003902159.1| - 0.19 11.8 1.7 0.52 10.5 0.0 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-H2C2_2 PF13465.6 gi|307595842|ref|YP_003902159.1| - 0.2 12.1 2.2 16 6.2 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-IS66 PF13005.7 gi|307595842|ref|YP_003902159.1| - 0.39 11.2 4.7 13 6.3 4.7 2.4 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 zf-RING_7 PF02591.15 gi|307595842|ref|YP_003902159.1| - 1.4 9.1 6.1 6.3 7.1 0.5 2.3 1 1 1 2 2 2 0 C4-type zinc ribbon domain FRG1 PF06229.12 gi|307595844|ref|YP_003902161.1| - 0.047 13.4 0.1 0.052 13.2 0.1 1.0 1 0 0 1 1 1 0 FRG1-like domain SspH PF08141.12 gi|307595844|ref|YP_003902161.1| - 0.048 13.8 2.3 0.46 10.6 0.9 2.3 2 0 0 2 2 2 0 Small acid-soluble spore protein H family PHB_acc_N PF07879.11 gi|307595844|ref|YP_003902161.1| - 0.13 12.4 2.7 3.4 7.8 0.6 2.8 2 1 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain PfkB PF00294.24 gi|307595846|ref|YP_003902163.1| - 2.7e-18 66.3 0.0 1.3e-17 64.0 0.0 1.9 1 1 0 1 1 1 1 pfkB family carbohydrate kinase MarR_2 PF12802.7 gi|307595847|ref|YP_003902164.1| - 4.2e-13 49.0 0.2 1.1e-12 47.7 0.3 1.6 2 0 0 2 2 1 1 MarR family TrmB PF01978.19 gi|307595847|ref|YP_003902164.1| - 6.5e-11 42.0 0.0 1.2e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|307595847|ref|YP_003902164.1| - 9e-09 34.8 0.2 2e-08 33.6 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|307595847|ref|YP_003902164.1| - 9.3e-09 35.0 0.1 1.7e-08 34.1 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|307595847|ref|YP_003902164.1| - 1.6e-08 34.3 0.0 3.5e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|307595847|ref|YP_003902164.1| - 7.2e-08 32.3 0.1 1.3e-07 31.5 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|307595847|ref|YP_003902164.1| - 1.2e-07 31.7 0.1 1.8e-07 31.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|307595847|ref|YP_003902164.1| - 1.5e-06 28.0 0.0 4.3e-06 26.5 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|307595847|ref|YP_003902164.1| - 7e-06 25.7 0.6 1.4e-05 24.7 0.4 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|307595847|ref|YP_003902164.1| - 1.9e-05 24.5 0.0 4.2e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|307595847|ref|YP_003902164.1| - 3.2e-05 23.6 0.2 5.8e-05 22.8 0.2 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|307595847|ref|YP_003902164.1| - 3.4e-05 23.3 0.2 8.4e-05 22.0 0.2 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|307595847|ref|YP_003902164.1| - 7.2e-05 22.9 0.0 0.00017 21.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 gi|307595847|ref|YP_003902164.1| - 0.00015 21.6 0.2 0.00032 20.5 0.0 1.6 2 0 0 2 2 1 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|307595847|ref|YP_003902164.1| - 0.00025 21.4 0.0 0.0005 20.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.6 gi|307595847|ref|YP_003902164.1| - 0.00028 21.0 0.4 0.00041 20.4 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|307595847|ref|YP_003902164.1| - 0.0004 20.8 0.1 0.00068 20.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|307595847|ref|YP_003902164.1| - 0.00056 20.3 0.0 0.0016 18.7 0.0 1.8 2 1 0 2 2 1 1 Penicillinase repressor DUF2250 PF10007.9 gi|307595847|ref|YP_003902164.1| - 0.00099 19.2 0.0 0.0018 18.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_AsnC-type PF13404.6 gi|307595847|ref|YP_003902164.1| - 0.0012 18.6 0.2 0.0022 17.8 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain CENP-B_N PF04218.13 gi|307595847|ref|YP_003902164.1| - 0.0018 17.9 0.0 0.0081 15.8 0.0 2.0 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain RP-C PF03428.13 gi|307595847|ref|YP_003902164.1| - 0.0025 17.5 0.1 0.0057 16.3 0.1 1.6 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_3 PF01381.22 gi|307595847|ref|YP_003902164.1| - 0.0041 17.1 0.0 0.011 15.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|307595847|ref|YP_003902164.1| - 0.0045 16.4 0.0 0.0092 15.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.6 gi|307595847|ref|YP_003902164.1| - 0.0048 16.9 0.1 0.0075 16.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Crp PF00325.20 gi|307595847|ref|YP_003902164.1| - 0.0088 15.7 0.0 0.023 14.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family DUF742 PF05331.11 gi|307595847|ref|YP_003902164.1| - 0.0096 15.7 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_17 PF12728.7 gi|307595847|ref|YP_003902164.1| - 0.011 15.9 0.1 0.022 14.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AbiEi_4 PF13338.6 gi|307595847|ref|YP_003902164.1| - 0.012 15.7 0.4 0.38 11.0 0.3 2.2 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Sigma70_r4_2 PF08281.12 gi|307595847|ref|YP_003902164.1| - 0.012 15.2 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 RPA_C PF08784.11 gi|307595847|ref|YP_003902164.1| - 0.052 14.2 0.0 0.11 13.2 0.0 1.7 1 1 0 1 1 1 0 Replication protein A C terminal PaaX PF07848.12 gi|307595847|ref|YP_003902164.1| - 0.063 13.5 0.3 0.33 11.2 0.2 2.2 1 1 1 2 2 2 0 PaaX-like protein GntR PF00392.21 gi|307595847|ref|YP_003902164.1| - 0.068 12.8 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Phage_CI_repr PF07022.13 gi|307595847|ref|YP_003902164.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_47 PF16221.5 gi|307595847|ref|YP_003902164.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.5 1 1 0 1 1 1 0 winged helix-turn-helix HTH_1 PF00126.27 gi|307595847|ref|YP_003902164.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family MerR PF00376.23 gi|307595847|ref|YP_003902164.1| - 0.18 11.6 1.0 1.4 8.8 1.0 2.1 1 1 0 1 1 1 0 MerR family regulatory protein Peptidase_M24 PF00557.24 gi|307595849|ref|YP_003902166.1| - 6.1e-61 205.8 0.4 7.7e-61 205.4 0.4 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|307595849|ref|YP_003902166.1| - 8.5e-09 36.2 0.0 2e-08 35.0 0.0 1.7 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain HD PF01966.22 gi|307595851|ref|YP_003902168.1| - 1.2e-08 35.1 0.1 3.5e-08 33.7 0.1 1.8 1 0 0 1 1 1 1 HD domain Lycopene_cycl PF05834.12 gi|307595852|ref|YP_003902169.1| - 3.2e-06 26.5 0.0 0.052 12.6 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|307595852|ref|YP_003902169.1| - 2.4e-05 24.1 0.0 0.0066 16.1 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|307595852|ref|YP_003902169.1| - 0.00015 21.1 0.2 0.0031 16.8 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|307595852|ref|YP_003902169.1| - 0.00022 21.4 0.0 0.00095 19.3 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain SE PF08491.10 gi|307595852|ref|YP_003902169.1| - 0.00031 19.9 0.1 0.00046 19.3 0.1 1.3 1 0 0 1 1 1 1 Squalene epoxidase Thi4 PF01946.17 gi|307595852|ref|YP_003902169.1| - 0.00048 19.4 0.1 0.0013 18.1 0.0 1.7 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|307595852|ref|YP_003902169.1| - 0.0035 16.1 0.0 0.0054 15.5 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|307595852|ref|YP_003902169.1| - 0.0048 16.9 0.0 0.012 15.6 0.0 1.7 1 0 0 1 1 1 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|307595852|ref|YP_003902169.1| - 0.024 13.9 0.0 0.032 13.4 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307595852|ref|YP_003902169.1| - 0.026 15.1 0.0 0.1 13.2 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|307595852|ref|YP_003902169.1| - 0.051 12.4 0.0 2.3 7.0 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|307595852|ref|YP_003902169.1| - 0.17 11.1 0.0 0.3 10.3 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase tRNA-synt_1b PF00579.25 gi|307595853|ref|YP_003902170.1| - 1e-40 139.9 0.0 2e-40 138.9 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Methyltrn_RNA_2 PF04013.12 gi|307595853|ref|YP_003902170.1| - 0.026 14.2 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase DUF371 PF04027.13 gi|307595854|ref|YP_003902171.1| - 2.8e-50 169.7 0.1 3.4e-50 169.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) TFA2_Winged_2 PF18121.1 gi|307595855|ref|YP_003902172.1| - 0.13 12.0 0.1 0.3 10.8 0.1 1.6 1 0 0 1 1 1 0 TFA2 Winged helix domain 2 ERGIC_N PF13850.6 gi|307595855|ref|YP_003902172.1| - 0.3 11.5 0.1 0.3 11.5 0.1 2.2 3 0 0 3 3 3 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) IlvN PF07991.12 gi|307595856|ref|YP_003902173.1| - 1.2e-56 190.8 0.1 1.9e-56 190.2 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|307595856|ref|YP_003902173.1| - 1e-33 116.6 0.0 1.4e-33 116.2 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.15 gi|307595856|ref|YP_003902173.1| - 1.8e-08 34.7 0.0 3.3e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|307595856|ref|YP_003902173.1| - 2.2e-07 31.4 0.0 4.4e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|307595856|ref|YP_003902173.1| - 9.7e-07 29.0 0.0 3.6e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|307595856|ref|YP_003902173.1| - 1.1e-05 24.9 0.0 2.2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|307595856|ref|YP_003902173.1| - 0.0026 17.6 0.0 0.0046 16.8 0.0 1.4 1 0 0 1 1 1 1 Rossmann-like domain PDH PF02153.17 gi|307595856|ref|YP_003902173.1| - 0.0027 16.8 0.0 0.0039 16.2 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase Porphobil_deam PF01379.20 gi|307595857|ref|YP_003902174.1| - 7.2e-68 228.1 0.0 8.6e-68 227.9 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|307595857|ref|YP_003902174.1| - 4.9e-14 52.4 0.1 8.6e-14 51.7 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.20 gi|307595857|ref|YP_003902174.1| - 0.0011 18.4 0.0 0.0026 17.2 0.0 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 Ribonucleas_3_2 PF11469.8 gi|307595857|ref|YP_003902174.1| - 0.099 13.1 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease III AAA_18 PF13238.6 gi|307595858|ref|YP_003902175.1| - 6.6e-06 26.7 0.0 2.1e-05 25.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|307595858|ref|YP_003902175.1| - 0.0004 20.8 0.0 0.0014 19.0 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|307595858|ref|YP_003902175.1| - 0.026 14.9 0.0 0.14 12.5 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain RuvB_N PF05496.12 gi|307595858|ref|YP_003902175.1| - 0.059 13.1 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain CAMSAP_CKK PF08683.11 gi|307595858|ref|YP_003902175.1| - 0.092 12.9 0.0 0.89 9.7 0.0 2.2 2 0 0 2 2 2 0 Microtubule-binding calmodulin-regulated spectrin-associated AAA_22 PF13401.6 gi|307595858|ref|YP_003902175.1| - 0.11 12.7 0.0 0.28 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Hydin_ADK PF17213.3 gi|307595858|ref|YP_003902175.1| - 6.5 7.0 6.5 0.78 10.0 0.1 2.3 2 1 0 2 2 2 0 Hydin Adenylate kinase-like domain HTH_23 PF13384.6 gi|307595859|ref|YP_003902176.1| - 1.6e-07 30.9 0.0 2.8e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|307595859|ref|YP_003902176.1| - 4.9e-07 29.3 0.0 3.2e-06 26.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|307595859|ref|YP_003902176.1| - 1.6e-05 25.2 0.1 4.7e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|307595859|ref|YP_003902176.1| - 3.1e-05 24.0 0.0 5.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0122 PF04297.14 gi|307595859|ref|YP_003902176.1| - 8.6e-05 22.7 1.9 8.6e-05 22.7 1.9 1.8 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like Terminase_5 PF06056.12 gi|307595859|ref|YP_003902176.1| - 9.9e-05 22.1 0.0 0.00018 21.3 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_11 PF08279.12 gi|307595859|ref|YP_003902176.1| - 0.0003 20.7 0.3 0.00091 19.1 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|307595859|ref|YP_003902176.1| - 0.00036 20.0 0.0 0.00091 18.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_17 PF12728.7 gi|307595859|ref|YP_003902176.1| - 0.00078 19.6 0.0 0.0024 18.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|307595859|ref|YP_003902176.1| - 0.0017 18.0 0.0 0.0037 17.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|307595859|ref|YP_003902176.1| - 0.0023 17.5 0.0 0.0036 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TnsD PF15978.5 gi|307595859|ref|YP_003902176.1| - 0.0031 16.5 0.1 0.0034 16.4 0.1 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_30 PF13556.6 gi|307595859|ref|YP_003902176.1| - 0.004 16.9 0.0 0.0078 16.0 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.16 gi|307595859|ref|YP_003902176.1| - 0.0042 16.6 0.0 0.013 15.0 0.0 1.9 3 0 0 3 3 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|307595859|ref|YP_003902176.1| - 0.0043 17.0 0.0 0.0072 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_ECF PF07638.11 gi|307595859|ref|YP_003902176.1| - 0.0066 16.4 0.0 0.013 15.4 0.0 1.5 1 1 0 1 1 1 1 ECF sigma factor DegS PF05384.11 gi|307595859|ref|YP_003902176.1| - 0.01 15.4 1.6 0.32 10.5 0.1 2.1 2 0 0 2 2 2 0 Sensor protein DegS HTH_22 PF13309.6 gi|307595859|ref|YP_003902176.1| - 0.014 15.5 0.1 0.049 13.7 0.0 2.0 2 0 0 2 2 1 0 HTH domain HTH_3 PF01381.22 gi|307595859|ref|YP_003902176.1| - 0.015 15.3 0.4 0.053 13.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix RPA_C PF08784.11 gi|307595859|ref|YP_003902176.1| - 0.017 15.7 0.1 0.067 13.9 0.0 2.0 1 1 1 2 2 2 0 Replication protein A C terminal HTH_7 PF02796.15 gi|307595859|ref|YP_003902176.1| - 0.019 15.0 0.0 0.039 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Tnp_1_2 PF13022.6 gi|307595859|ref|YP_003902176.1| - 0.022 14.9 0.3 0.037 14.2 0.3 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_Tnp_1 PF01527.20 gi|307595859|ref|YP_003902176.1| - 0.024 15.0 0.0 0.045 14.1 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_8 PF02954.19 gi|307595859|ref|YP_003902176.1| - 0.03 14.1 0.0 0.07 12.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_36 PF13730.6 gi|307595859|ref|YP_003902176.1| - 0.035 14.1 0.0 0.098 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 gi|307595859|ref|YP_003902176.1| - 0.045 14.3 0.2 0.045 14.3 0.2 1.7 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_10 PF04967.12 gi|307595859|ref|YP_003902176.1| - 0.072 12.9 0.2 0.17 11.7 0.0 1.7 2 0 0 2 2 1 0 HTH DNA binding domain NUMOD1 PF07453.13 gi|307595859|ref|YP_003902176.1| - 0.085 13.1 0.1 0.21 11.9 0.1 1.7 1 0 0 1 1 1 0 NUMOD1 domain DUF3791 PF12668.7 gi|307595859|ref|YP_003902176.1| - 0.14 12.2 0.1 0.27 11.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) IF2_N PF04760.15 gi|307595859|ref|YP_003902176.1| - 0.19 11.6 2.4 0.33 10.8 0.1 2.5 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region UPF0449 PF15136.6 gi|307595859|ref|YP_003902176.1| - 0.48 10.9 3.1 2.9 8.4 0.6 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 XLF PF09302.11 gi|307595859|ref|YP_003902176.1| - 1.5 9.0 4.5 11 6.1 0.8 2.1 1 1 1 2 2 2 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component Asparaginase_2 PF01112.18 gi|307595860|ref|YP_003902177.1| - 5.6e-87 291.6 2.8 6.8e-87 291.3 2.8 1.0 1 0 0 1 1 1 1 Asparaginase Amidohydro_1 PF01979.20 gi|307595861|ref|YP_003902178.1| - 6.1e-58 196.8 0.0 7.2e-58 196.5 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|307595861|ref|YP_003902178.1| - 5.1e-16 59.2 0.1 4.6e-10 39.6 0.0 2.3 2 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|307595861|ref|YP_003902178.1| - 0.00027 20.4 0.0 0.0004 19.8 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Diphthami_syn_2 PF01902.17 gi|307595862|ref|YP_003902179.1| - 2.7e-56 190.5 0.0 3e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|307595862|ref|YP_003902179.1| - 0.0093 15.5 0.0 0.029 13.9 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC zinc_ribbon_4 PF13717.6 gi|307595863|ref|YP_003902180.1| - 7.5e-06 25.8 0.3 0.13 12.2 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|307595863|ref|YP_003902180.1| - 8.2e-05 22.6 3.0 0.014 15.5 0.8 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|307595863|ref|YP_003902180.1| - 8.3e-05 21.9 1.5 0.086 12.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|307595863|ref|YP_003902180.1| - 0.00041 20.4 0.8 0.0011 19.0 0.8 1.7 1 1 0 1 1 1 1 Zinc ribbon domain CpXC PF14353.6 gi|307595863|ref|YP_003902180.1| - 0.00058 19.9 0.1 0.69 10.0 0.0 2.1 2 0 0 2 2 2 2 CpXC protein Cys_rich_CPXG PF14255.6 gi|307595863|ref|YP_003902180.1| - 0.00063 19.6 1.3 0.1 12.5 0.2 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf-C2HC_2 PF13913.6 gi|307595863|ref|YP_003902180.1| - 0.00075 19.3 4.8 0.015 15.2 0.4 2.3 2 0 0 2 2 2 1 zinc-finger of a C2HC-type zinc_ribbon_5 PF13719.6 gi|307595863|ref|YP_003902180.1| - 0.0015 18.2 0.8 0.94 9.3 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|307595863|ref|YP_003902180.1| - 0.0029 18.3 1.2 2.6 9.1 0.1 2.3 2 0 0 2 2 2 1 C2H2-type zinc finger ADK_lid PF05191.14 gi|307595863|ref|YP_003902180.1| - 0.0036 17.2 0.5 0.89 9.6 0.0 2.2 2 0 0 2 2 2 1 Adenylate kinase, active site lid zinc_ribbon_9 PF14369.6 gi|307595863|ref|YP_003902180.1| - 0.0051 17.1 0.4 2.3 8.6 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon DZR PF12773.7 gi|307595863|ref|YP_003902180.1| - 0.0062 16.5 0.1 0.01 15.8 0.1 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-IS66 PF13005.7 gi|307595863|ref|YP_003902180.1| - 0.0064 16.9 0.1 1.5 9.2 0.0 2.3 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|307595863|ref|YP_003902180.1| - 0.0064 16.5 0.1 0.0083 16.1 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|307595863|ref|YP_003902180.1| - 0.0065 16.0 1.0 0.95 9.0 0.1 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding FYDLN_acid PF09538.10 gi|307595863|ref|YP_003902180.1| - 0.007 17.0 0.4 3.2 8.5 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) zf-Di19 PF05605.12 gi|307595863|ref|YP_003902180.1| - 0.008 16.4 0.5 0.98 9.8 0.2 2.1 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding Zn_ribbon_17 PF17120.5 gi|307595863|ref|YP_003902180.1| - 0.0083 15.7 0.2 0.012 15.2 0.2 1.2 1 0 0 1 1 1 1 Zinc-ribbon, C4HC2 type PhnA_Zn_Ribbon PF08274.12 gi|307595863|ref|YP_003902180.1| - 0.0089 16.0 0.3 0.38 10.8 0.0 2.3 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Lar_restr_allev PF14354.6 gi|307595863|ref|YP_003902180.1| - 0.0099 16.2 0.5 0.013 15.8 0.5 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF983 PF06170.12 gi|307595863|ref|YP_003902180.1| - 0.01 16.2 0.1 1.4 9.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zf-CHCC PF10276.9 gi|307595863|ref|YP_003902180.1| - 0.011 15.8 1.8 0.42 10.7 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger domain zf-ISL3 PF14690.6 gi|307595863|ref|YP_003902180.1| - 0.011 16.4 0.2 4.4 8.0 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|307595863|ref|YP_003902180.1| - 0.011 15.4 5.8 0.78 9.5 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|307595863|ref|YP_003902180.1| - 0.012 15.5 0.5 4.3 7.3 0.1 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-H2C2_2 PF13465.6 gi|307595863|ref|YP_003902180.1| - 0.014 15.8 0.4 6.9 7.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.26 gi|307595863|ref|YP_003902180.1| - 0.015 15.7 3.1 3.1 8.4 0.6 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type TerY_C PF15616.6 gi|307595863|ref|YP_003902180.1| - 0.015 15.4 0.2 0.035 14.2 0.2 1.6 1 1 0 1 1 1 0 TerY-C metal binding domain zf-AN1 PF01428.16 gi|307595863|ref|YP_003902180.1| - 0.017 15.3 1.1 4.2 7.6 0.1 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-BED PF02892.15 gi|307595863|ref|YP_003902180.1| - 0.018 15.1 0.3 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 BED zinc finger Nudix_N_2 PF14803.6 gi|307595863|ref|YP_003902180.1| - 0.018 14.9 1.0 1.3 9.0 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-RING_2 PF13639.6 gi|307595863|ref|YP_003902180.1| - 0.024 14.9 0.4 0.044 14.1 0.4 1.4 1 1 0 1 1 1 0 Ring finger domain YacG PF03884.14 gi|307595863|ref|YP_003902180.1| - 0.029 14.1 0.3 6.1 6.7 0.0 2.2 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG Acetone_carb_G PF08882.11 gi|307595863|ref|YP_003902180.1| - 0.034 14.3 1.0 0.36 11.0 0.1 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit IBR PF01485.21 gi|307595863|ref|YP_003902180.1| - 0.038 14.2 0.7 0.065 13.5 0.7 1.4 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain Elf1 PF05129.13 gi|307595863|ref|YP_003902180.1| - 0.039 14.0 0.0 0.056 13.5 0.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like CxC7 PF18866.1 gi|307595863|ref|YP_003902180.1| - 0.043 14.0 1.0 2 8.6 0.1 2.1 1 1 0 2 2 2 0 CxC7 like cysteine cluster associated with KDZ transposases zf-DNL PF05180.12 gi|307595863|ref|YP_003902180.1| - 0.047 13.6 0.3 0.054 13.4 0.3 1.2 1 0 0 1 1 1 0 DNL zinc finger Zn_Tnp_IS1595 PF12760.7 gi|307595863|ref|YP_003902180.1| - 0.049 13.6 4.0 2.7 8.1 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Mu-like_Com PF10122.9 gi|307595863|ref|YP_003902180.1| - 0.051 13.0 4.1 1.9 8.0 0.1 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-RING_7 PF02591.15 gi|307595863|ref|YP_003902180.1| - 0.051 13.8 0.7 6 7.1 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf_UBZ PF18439.1 gi|307595863|ref|YP_003902180.1| - 0.052 13.2 5.1 0.2 11.3 0.1 2.4 3 0 0 3 3 2 0 Ubiquitin-Binding Zinc Finger DUF2256 PF10013.9 gi|307595863|ref|YP_003902180.1| - 0.064 13.4 1.3 5.5 7.2 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF35_N PF12172.8 gi|307595863|ref|YP_003902180.1| - 0.068 13.1 2.4 5.5 7.0 0.1 2.7 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF3268 PF11672.8 gi|307595863|ref|YP_003902180.1| - 0.08 13.3 0.6 0.1 12.9 0.6 1.2 1 0 0 1 1 1 0 zinc-finger-containing domain Trm112p PF03966.16 gi|307595863|ref|YP_003902180.1| - 0.086 13.4 0.2 8.9 7.0 0.0 2.2 2 0 0 2 2 2 0 Trm112p-like protein Sgf11 PF08209.11 gi|307595863|ref|YP_003902180.1| - 0.095 12.3 1.5 0.68 9.5 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-HYPF PF07503.12 gi|307595863|ref|YP_003902180.1| - 0.11 12.3 1.8 0.56 10.0 0.2 2.1 2 0 0 2 2 2 0 HypF finger Ogr_Delta PF04606.12 gi|307595863|ref|YP_003902180.1| - 0.14 12.1 1.7 7.8 6.6 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger TFIIS_C PF01096.18 gi|307595863|ref|YP_003902180.1| - 0.15 12.0 1.3 14 5.6 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-tcix PF14952.6 gi|307595863|ref|YP_003902180.1| - 0.18 11.5 2.5 9 6.0 0.3 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-C2H2_12 PF18112.1 gi|307595863|ref|YP_003902180.1| - 0.65 10.5 4.4 17 5.9 0.5 2.4 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-C2H2_6 PF13912.6 gi|307595863|ref|YP_003902180.1| - 0.75 9.9 4.2 10 6.2 0.4 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf_C2H2_10 PF18414.1 gi|307595863|ref|YP_003902180.1| - 1.5 8.5 4.3 1.1 8.8 0.3 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger DnaGprimase_HBD PF16730.5 gi|307595864|ref|YP_003902181.1| - 0.0099 16.0 1.6 1.5 8.9 0.0 2.3 2 0 0 2 2 2 2 DnaG-primase C-terminal, helicase-binding domain DUF445 PF04286.12 gi|307595864|ref|YP_003902181.1| - 0.027 14.3 0.3 0.031 14.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Sec16_C PF12931.7 gi|307595864|ref|YP_003902181.1| - 0.035 13.8 0.1 0.043 13.5 0.1 1.2 1 0 0 1 1 1 0 Sec23-binding domain of Sec16 partial_CstF PF15861.5 gi|307595864|ref|YP_003902181.1| - 0.3 10.9 1.5 1.6 8.6 0.1 2.6 2 1 1 3 3 3 0 Partial cleavage stimulation factor domain Ldh_1_N PF00056.23 gi|307595865|ref|YP_003902182.1| - 9.9e-39 132.7 0.1 1.4e-38 132.2 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|307595865|ref|YP_003902182.1| - 7.9e-22 78.0 0.0 1.4e-21 77.2 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|307595865|ref|YP_003902182.1| - 0.00013 21.5 0.0 0.00029 20.5 0.0 1.5 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|307595865|ref|YP_003902182.1| - 0.002 17.7 0.1 0.0044 16.6 0.1 1.6 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF2785 PF10978.8 gi|307595865|ref|YP_003902182.1| - 0.032 14.0 0.0 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2785) Anthrax_toxA PF03497.16 gi|307595865|ref|YP_003902182.1| - 0.15 12.2 0.0 1.9 8.6 0.0 2.2 2 0 0 2 2 2 0 Anthrax toxin LF subunit Sua5_yciO_yrdC PF01300.18 gi|307595866|ref|YP_003902183.1| - 4e-53 179.6 0.0 5.5e-53 179.1 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|307595866|ref|YP_003902183.1| - 9.5e-28 97.4 0.0 1.4e-27 96.9 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding FeS_assembly_P PF01883.19 gi|307595867|ref|YP_003902184.1| - 5.2e-17 61.8 0.1 7.4e-17 61.3 0.1 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|307595867|ref|YP_003902184.1| - 0.11 12.6 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 NifU-like domain NolV PF06635.12 gi|307595868|ref|YP_003902185.1| - 0.019 14.4 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein NolV TrmB PF01978.19 gi|307595869|ref|YP_003902186.1| - 2.4e-09 37.0 1.9 3.3e-09 36.5 0.4 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|307595869|ref|YP_003902186.1| - 9.9e-09 34.9 0.5 2.8e-08 33.5 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|307595869|ref|YP_003902186.1| - 5.4e-08 32.6 0.1 1.8e-07 31.0 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.6 gi|307595869|ref|YP_003902186.1| - 1.1e-06 28.3 0.1 2.5e-06 27.1 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|307595869|ref|YP_003902186.1| - 2.8e-06 27.1 0.1 2.8e-06 27.1 0.1 1.9 2 1 0 2 2 2 1 HTH domain MarR PF01047.22 gi|307595869|ref|YP_003902186.1| - 1.6e-05 24.8 0.1 2.9e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|307595869|ref|YP_003902186.1| - 1.6e-05 24.6 0.0 3.2e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|307595869|ref|YP_003902186.1| - 2.2e-05 24.3 0.1 5.5e-05 23.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|307595869|ref|YP_003902186.1| - 3.2e-05 24.2 2.0 8.2e-05 22.9 0.2 2.3 2 1 1 3 3 2 1 Transcriptional regulator HTH_24 PF13412.6 gi|307595869|ref|YP_003902186.1| - 5.7e-05 22.6 0.1 0.00018 21.0 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|307595869|ref|YP_003902186.1| - 6.4e-05 22.5 1.4 9.4e-05 22.0 0.3 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|307595869|ref|YP_003902186.1| - 8.1e-05 22.6 0.2 0.00017 21.6 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|307595869|ref|YP_003902186.1| - 0.00033 20.6 0.1 0.00069 19.5 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|307595869|ref|YP_003902186.1| - 0.00037 20.0 0.4 0.00064 19.2 0.1 1.7 2 0 0 2 2 1 1 Sigma-70, region 4 Dimerisation2 PF16864.5 gi|307595869|ref|YP_003902186.1| - 0.00039 20.3 0.0 0.00093 19.1 0.0 1.6 2 0 0 2 2 1 1 Dimerisation domain Penicillinase_R PF03965.16 gi|307595869|ref|YP_003902186.1| - 0.00078 19.8 0.2 0.0011 19.3 0.2 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_40 PF14493.6 gi|307595869|ref|YP_003902186.1| - 0.00084 19.8 0.0 0.0019 18.6 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|307595869|ref|YP_003902186.1| - 0.00094 18.8 1.3 0.0079 15.8 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Sigma70_r4_2 PF08281.12 gi|307595869|ref|YP_003902186.1| - 0.0016 18.1 3.0 0.01 15.5 1.1 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|307595869|ref|YP_003902186.1| - 0.0026 17.9 0.1 0.0058 16.8 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Phage_rep_org_N PF09681.10 gi|307595869|ref|YP_003902186.1| - 0.0028 17.6 1.5 1 9.3 0.2 2.2 1 1 1 2 2 2 2 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_29 PF13551.6 gi|307595869|ref|YP_003902186.1| - 0.0034 17.4 0.0 0.0059 16.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_9 PF08221.11 gi|307595869|ref|YP_003902186.1| - 0.0045 17.1 0.2 0.017 15.2 0.1 2.1 2 0 0 2 2 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_23 PF13384.6 gi|307595869|ref|YP_003902186.1| - 0.0063 16.3 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain RuvB_C PF05491.13 gi|307595869|ref|YP_003902186.1| - 0.0077 16.1 1.1 0.63 10.0 0.1 2.5 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain TnsD PF15978.5 gi|307595869|ref|YP_003902186.1| - 0.0081 15.2 0.1 0.0092 15.0 0.1 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_27 PF13463.6 gi|307595869|ref|YP_003902186.1| - 0.0086 16.5 0.1 0.028 14.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain KorB PF08535.10 gi|307595869|ref|YP_003902186.1| - 0.02 14.9 0.1 0.057 13.5 0.1 1.8 1 1 0 1 1 1 0 KorB domain LexA_DNA_bind PF01726.16 gi|307595869|ref|YP_003902186.1| - 0.02 14.6 0.2 0.055 13.2 0.1 1.8 2 0 0 2 2 1 0 LexA DNA binding domain HTH_DeoR PF08220.12 gi|307595869|ref|YP_003902186.1| - 0.022 14.5 0.0 0.064 13.0 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sigma70_ECF PF07638.11 gi|307595869|ref|YP_003902186.1| - 0.035 14.0 0.1 0.059 13.3 0.1 1.4 1 0 0 1 1 1 0 ECF sigma factor Phage_antitermQ PF06530.12 gi|307595869|ref|YP_003902186.1| - 0.039 13.9 1.2 0.06 13.3 0.2 1.7 2 0 0 2 2 2 0 Phage antitermination protein Q Replic_Relax PF13814.6 gi|307595869|ref|YP_003902186.1| - 0.047 13.7 0.1 0.058 13.5 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation RP-C PF03428.13 gi|307595869|ref|YP_003902186.1| - 0.052 13.2 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF4423 PF14394.6 gi|307595869|ref|YP_003902186.1| - 0.062 13.0 0.3 0.13 11.9 0.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) IF2_N PF04760.15 gi|307595869|ref|YP_003902186.1| - 0.072 12.9 0.9 0.69 9.8 0.1 2.5 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_CodY PF08222.11 gi|307595869|ref|YP_003902186.1| - 0.078 12.5 0.1 0.35 10.5 0.0 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain DUF2250 PF10007.9 gi|307595869|ref|YP_003902186.1| - 0.16 12.1 1.8 2.3 8.4 0.1 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) OCD_Mu_crystall PF02423.15 gi|307595870|ref|YP_003902187.1| - 4.6e-78 262.4 3.2 5.6e-78 262.1 3.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|307595870|ref|YP_003902187.1| - 2.7e-11 43.7 0.2 4.6e-11 42.9 0.2 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|307595870|ref|YP_003902187.1| - 0.0095 16.2 0.1 0.015 15.6 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DUF2760 PF10816.8 gi|307595870|ref|YP_003902187.1| - 0.01 15.7 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2760) Semialdhyde_dh PF01118.24 gi|307595870|ref|YP_003902187.1| - 0.018 15.5 0.0 0.055 13.9 0.0 1.8 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DUF3027 PF11228.8 gi|307595871|ref|YP_003902188.1| - 0.0077 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3027) C1_1 PF00130.22 gi|307595871|ref|YP_003902188.1| - 0.32 10.9 5.4 2.5 8.0 1.5 2.5 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_2 PF03107.16 gi|307595871|ref|YP_003902188.1| - 0.42 11.0 0.4 0.42 11.0 0.4 3.0 3 0 0 3 3 3 0 C1 domain Peptidase_S9 PF00326.21 gi|307595872|ref|YP_003902189.1| - 1.2e-11 44.6 0.0 1.6e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|307595872|ref|YP_003902189.1| - 4.1e-10 39.3 0.0 0.00024 20.4 0.0 2.1 1 1 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|307595872|ref|YP_003902189.1| - 1.1e-08 36.0 0.0 3.4e-08 34.4 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|307595872|ref|YP_003902189.1| - 1.9e-07 31.0 0.0 9.7e-05 22.1 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|307595872|ref|YP_003902189.1| - 1.6e-06 28.2 0.0 5.2e-06 26.5 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 gi|307595872|ref|YP_003902189.1| - 3.4e-06 26.9 0.0 0.0062 16.3 0.0 2.1 2 0 0 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|307595872|ref|YP_003902189.1| - 5e-06 26.5 0.1 0.036 13.9 0.0 2.5 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase DLH PF01738.18 gi|307595872|ref|YP_003902189.1| - 2.6e-05 23.9 0.0 0.00021 20.9 0.0 1.9 1 1 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|307595872|ref|YP_003902189.1| - 4.1e-05 23.4 0.0 0.00015 21.5 0.0 1.9 1 1 1 2 2 2 1 Serine hydrolase (FSH1) Esterase PF00756.20 gi|307595872|ref|YP_003902189.1| - 0.0001 22.1 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 Putative esterase BAAT_C PF08840.11 gi|307595872|ref|YP_003902189.1| - 0.00019 21.5 0.0 0.00091 19.2 0.0 1.9 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Lipase_3 PF01764.25 gi|307595872|ref|YP_003902189.1| - 0.00036 20.4 0.0 0.0007 19.5 0.0 1.4 1 0 0 1 1 1 1 Lipase (class 3) UPF0227 PF05728.12 gi|307595872|ref|YP_003902189.1| - 0.0029 17.6 0.1 0.027 14.4 0.1 2.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) Peptidase_S15 PF02129.18 gi|307595872|ref|YP_003902189.1| - 0.0043 16.7 0.0 1.7 8.1 0.0 2.1 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Thioesterase PF00975.20 gi|307595872|ref|YP_003902189.1| - 0.0086 16.2 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Thioesterase domain Ser_hydrolase PF06821.13 gi|307595872|ref|YP_003902189.1| - 0.01 15.7 0.0 0.017 15.0 0.0 1.3 1 1 0 1 1 1 0 Serine hydrolase PhoPQ_related PF10142.9 gi|307595872|ref|YP_003902189.1| - 0.012 14.3 0.0 0.017 13.8 0.0 1.2 1 1 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein DUF2974 PF11187.8 gi|307595872|ref|YP_003902189.1| - 0.015 14.9 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) PGAP1 PF07819.13 gi|307595872|ref|YP_003902189.1| - 0.021 14.5 0.0 0.05 13.3 0.0 1.6 2 0 0 2 2 2 0 PGAP1-like protein LIDHydrolase PF10230.9 gi|307595872|ref|YP_003902189.1| - 0.077 12.5 0.0 7.6 6.0 0.0 2.1 2 0 0 2 2 2 0 Lipid-droplet associated hydrolase LIP PF03583.14 gi|307595872|ref|YP_003902189.1| - 0.11 11.7 0.1 0.22 10.8 0.0 1.5 2 0 0 2 2 2 0 Secretory lipase DUF829 PF05705.14 gi|307595872|ref|YP_003902189.1| - 0.18 11.7 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) AA_kinase PF00696.28 gi|307595874|ref|YP_003902191.1| - 6.2e-30 104.6 0.0 7.4e-30 104.3 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family polyprenyl_synt PF00348.17 gi|307595875|ref|YP_003902192.1| - 8.4e-53 179.0 0.0 1e-52 178.7 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase HEAT_2 PF13646.6 gi|307595875|ref|YP_003902192.1| - 0.036 14.4 0.8 67 4.0 0.0 4.0 4 0 0 4 4 4 0 HEAT repeats Thiolase_N PF00108.23 gi|307595876|ref|YP_003902193.1| - 2.7e-78 262.9 0.0 3.3e-78 262.6 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|307595876|ref|YP_003902193.1| - 1.4e-41 141.0 0.9 3e-41 139.9 0.1 2.1 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|307595876|ref|YP_003902193.1| - 1.4e-05 24.8 0.7 3.2e-05 23.6 0.4 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|307595876|ref|YP_003902193.1| - 0.024 14.5 0.5 3.9 7.4 0.1 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peptidase_S49 PF01343.18 gi|307595876|ref|YP_003902193.1| - 0.16 11.9 0.0 0.67 9.9 0.0 1.9 2 0 0 2 2 2 0 Peptidase family S49 eRF1_2 PF03464.15 gi|307595877|ref|YP_003902194.1| - 5e-32 111.0 0.0 8.3e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|307595877|ref|YP_003902194.1| - 7.4e-13 48.9 0.0 1.5e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|307595877|ref|YP_003902194.1| - 9.4e-11 42.1 0.0 1.5e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 Ribosomal_L7Ae PF01248.26 gi|307595877|ref|YP_003902194.1| - 8.6e-06 25.4 0.2 1.9e-05 24.3 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_3 PF03465.15 gi|307595877|ref|YP_003902194.1| - 1e-05 26.0 1.3 0.00012 22.5 1.3 2.5 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|307595877|ref|YP_003902194.1| - 0.017 15.1 0.0 0.046 13.7 0.0 1.7 1 1 0 1 1 1 0 eRF1 domain 1 Ribosomal_S8 PF00410.19 gi|307595877|ref|YP_003902194.1| - 0.12 12.3 0.7 0.96 9.4 0.5 2.7 2 1 0 2 2 2 0 Ribosomal protein S8 SpoU_sub_bind PF08032.12 gi|307595877|ref|YP_003902194.1| - 0.15 12.3 0.1 3.4 8.0 0.0 2.7 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding ThiS PF02597.20 gi|307595878|ref|YP_003902195.1| - 1.1e-14 54.8 0.0 1.3e-14 54.6 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|307595878|ref|YP_003902195.1| - 2.2e-06 27.9 0.1 2.4e-06 27.8 0.1 1.0 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) NLE PF08154.12 gi|307595878|ref|YP_003902195.1| - 0.019 15.5 0.3 0.026 15.0 0.3 1.4 1 1 0 1 1 1 0 NLE (NUC135) domain ThiS PF02597.20 gi|307595879|ref|YP_003902196.1| - 2.1e-10 41.1 0.0 2.5e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|307595879|ref|YP_003902196.1| - 5.5e-05 23.4 0.0 5.9e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) DUF1641 PF07849.11 gi|307595880|ref|YP_003902197.1| - 5.1e-17 61.5 1.9 1.1e-16 60.4 1.9 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HisKA PF00512.25 gi|307595880|ref|YP_003902197.1| - 0.018 15.1 0.4 0.096 12.7 0.3 2.1 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain ATP-synt PF00231.19 gi|307595880|ref|YP_003902197.1| - 0.14 11.9 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 ATP synthase Pyr_redox_2 PF07992.14 gi|307595881|ref|YP_003902198.1| - 3.4e-17 62.6 0.0 4.1e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307595881|ref|YP_003902198.1| - 6.2e-06 26.7 0.9 0.0083 16.7 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|307595881|ref|YP_003902198.1| - 0.19 11.7 0.3 6 6.8 0.2 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding DAO PF01266.24 gi|307595881|ref|YP_003902198.1| - 0.31 10.6 0.6 36 3.8 1.5 2.4 2 0 0 2 2 2 0 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|307595881|ref|YP_003902198.1| - 0.43 9.4 0.6 0.75 8.6 0.2 1.5 2 0 0 2 2 2 0 Tryptophan halogenase MacB_PCD PF12704.7 gi|307595883|ref|YP_003902200.1| - 5.1e-15 56.3 4.8 5.1e-15 56.3 4.8 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|307595883|ref|YP_003902200.1| - 1.7e-10 41.2 14.2 1.7e-10 41.2 14.2 3.2 3 1 0 3 3 3 1 FtsX-like permease family Radical_SAM PF04055.21 gi|307595884|ref|YP_003902201.1| - 1.2e-23 84.3 0.0 2.2e-23 83.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|307595884|ref|YP_003902201.1| - 1.2e-22 79.8 0.0 2.4e-22 78.8 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|307595884|ref|YP_003902201.1| - 0.00025 21.0 0.1 0.00072 19.5 0.1 1.8 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|307595884|ref|YP_003902201.1| - 0.0054 16.9 0.1 0.04 14.1 0.1 2.4 1 1 0 1 1 1 1 TRAM domain Alpha_adaptin_C PF02296.16 gi|307595884|ref|YP_003902201.1| - 0.047 13.9 0.0 12 6.2 0.0 2.5 2 0 0 2 2 2 0 Alpha adaptin AP2, C-terminal domain Big_3_5 PF16640.5 gi|307595885|ref|YP_003902202.1| - 2.5e-14 53.2 36.6 7.2e-07 29.3 4.3 6.3 6 0 0 6 6 6 4 Bacterial Ig-like domain (group 3) Filamin PF00630.19 gi|307595885|ref|YP_003902202.1| - 0.0029 18.4 0.7 3.6 8.5 0.1 4.1 3 1 0 3 3 3 1 Filamin/ABP280 repeat Big_3 PF07523.12 gi|307595885|ref|YP_003902202.1| - 0.061 13.6 0.6 3.9 7.9 0.1 3.2 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) Y_Y_Y PF07495.13 gi|307595885|ref|YP_003902202.1| - 0.17 11.8 13.2 2 8.5 0.2 5.0 5 0 0 5 5 5 0 Y_Y_Y domain CarboxypepD_reg PF13620.6 gi|307595885|ref|YP_003902202.1| - 1.2 9.5 10.8 21 5.4 0.0 5.5 5 1 0 5 5 5 0 Carboxypeptidase regulatory-like domain HAD_2 PF13419.6 gi|307595886|ref|YP_003902203.1| - 3e-11 43.7 0.0 3.6e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|307595886|ref|YP_003902203.1| - 1.3e-05 25.6 0.0 0.0041 17.4 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|307595886|ref|YP_003902203.1| - 0.00032 21.2 0.0 0.00052 20.5 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PBP_like PF12727.7 gi|307595887|ref|YP_003902204.1| - 1.9e-39 134.8 0.0 2.6e-39 134.4 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.27 gi|307595887|ref|YP_003902204.1| - 2.7e-06 27.2 0.0 4.7e-05 23.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family ATP_bind_1 PF03029.17 gi|307595888|ref|YP_003902205.1| - 1.4e-62 211.6 0.0 1.7e-62 211.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|307595888|ref|YP_003902205.1| - 4e-07 29.8 0.1 0.0095 15.5 0.0 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|307595888|ref|YP_003902205.1| - 9.6e-07 28.6 0.1 9.5e-05 22.1 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain GTP_EFTU PF00009.27 gi|307595888|ref|YP_003902205.1| - 3e-06 26.9 0.1 0.00017 21.2 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|307595888|ref|YP_003902205.1| - 1.2e-05 25.8 0.0 5e-05 23.7 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain PduV-EutP PF10662.9 gi|307595888|ref|YP_003902205.1| - 2.9e-05 23.8 0.0 0.24 11.2 0.0 3.1 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|307595888|ref|YP_003902205.1| - 5.5e-05 23.1 0.3 0.0086 16.0 0.0 2.4 2 1 0 2 2 2 1 NTPase RsgA_GTPase PF03193.16 gi|307595888|ref|YP_003902205.1| - 0.00013 22.0 0.4 3.9 7.3 0.0 3.6 3 1 1 4 4 4 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|307595888|ref|YP_003902205.1| - 0.00013 22.0 0.0 0.0015 18.6 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase MeaB PF03308.16 gi|307595888|ref|YP_003902205.1| - 0.00014 21.0 0.0 0.0013 17.8 0.0 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|307595888|ref|YP_003902205.1| - 0.00014 21.9 0.0 0.00025 21.1 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CLP1_P PF16575.5 gi|307595888|ref|YP_003902205.1| - 0.00024 21.0 0.1 0.035 13.9 0.0 2.8 2 1 1 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_22 PF13401.6 gi|307595888|ref|YP_003902205.1| - 0.00026 21.3 0.0 0.00066 20.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|307595888|ref|YP_003902205.1| - 0.00033 19.9 0.0 0.00044 19.5 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase MobB PF03205.14 gi|307595888|ref|YP_003902205.1| - 0.00058 19.8 0.0 0.0015 18.4 0.0 1.7 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.17 gi|307595888|ref|YP_003902205.1| - 0.00062 19.9 0.6 0.0036 17.4 0.0 2.2 2 1 0 2 2 2 1 Helicase HerA, central domain NACHT PF05729.12 gi|307595888|ref|YP_003902205.1| - 0.00084 19.3 0.0 0.002 18.1 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_30 PF13604.6 gi|307595888|ref|YP_003902205.1| - 0.00097 18.9 0.0 0.0023 17.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|307595888|ref|YP_003902205.1| - 0.0025 18.4 0.0 0.006 17.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_5 PF07728.14 gi|307595888|ref|YP_003902205.1| - 0.0032 17.5 0.0 0.011 15.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) KTI12 PF08433.10 gi|307595888|ref|YP_003902205.1| - 0.004 16.7 0.0 0.066 12.7 0.0 2.1 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_24 PF13479.6 gi|307595888|ref|YP_003902205.1| - 0.0041 16.9 0.0 0.006 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|307595888|ref|YP_003902205.1| - 0.0042 16.6 0.0 0.0084 15.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_31 PF13614.6 gi|307595888|ref|YP_003902205.1| - 0.0056 16.6 0.0 0.072 13.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain MMR_HSR1_Xtn PF16897.5 gi|307595888|ref|YP_003902205.1| - 0.0062 16.5 0.1 2.2 8.4 0.1 2.8 2 1 1 3 3 3 1 C-terminal region of MMR_HSR1 domain PhoH PF02562.16 gi|307595888|ref|YP_003902205.1| - 0.0065 15.9 0.0 0.12 11.8 0.0 2.1 2 0 0 2 2 2 1 PhoH-like protein Zeta_toxin PF06414.12 gi|307595888|ref|YP_003902205.1| - 0.0065 15.8 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 gi|307595888|ref|YP_003902205.1| - 0.0066 16.7 0.2 0.054 13.7 0.1 2.4 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|307595888|ref|YP_003902205.1| - 0.008 16.7 0.0 0.019 15.5 0.0 1.7 2 0 0 2 2 1 1 ABC transporter T2SSE PF00437.20 gi|307595888|ref|YP_003902205.1| - 0.01 14.9 0.0 0.022 13.8 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein Ras PF00071.22 gi|307595888|ref|YP_003902205.1| - 0.012 15.2 0.1 1.7 8.2 0.0 2.3 2 0 0 2 2 2 0 Ras family NB-ARC PF00931.22 gi|307595888|ref|YP_003902205.1| - 0.013 14.7 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|307595888|ref|YP_003902205.1| - 0.015 15.2 0.0 0.036 14.0 0.0 1.6 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|307595888|ref|YP_003902205.1| - 0.017 14.5 0.7 0.16 11.3 0.7 2.2 1 1 0 1 1 1 0 KaiC SRPRB PF09439.10 gi|307595888|ref|YP_003902205.1| - 0.018 14.5 0.1 5.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit TrwB_AAD_bind PF10412.9 gi|307595888|ref|YP_003902205.1| - 0.035 13.0 0.0 0.055 12.4 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Roc PF08477.13 gi|307595888|ref|YP_003902205.1| - 0.036 14.3 0.0 0.53 10.5 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Septin PF00735.18 gi|307595888|ref|YP_003902205.1| - 0.038 13.3 0.4 0.062 12.6 0.4 1.6 1 1 0 1 1 1 0 Septin AAA_19 PF13245.6 gi|307595888|ref|YP_003902205.1| - 0.042 14.2 0.2 0.16 12.3 0.0 2.0 3 0 0 3 3 2 0 AAA domain HisG PF01634.18 gi|307595888|ref|YP_003902205.1| - 0.052 13.5 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 ATP phosphoribosyltransferase AAA_33 PF13671.6 gi|307595888|ref|YP_003902205.1| - 0.055 13.6 0.0 0.079 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|307595888|ref|YP_003902205.1| - 0.061 13.4 0.0 0.14 12.2 0.0 1.8 2 1 0 2 2 1 0 AAA domain AAA_29 PF13555.6 gi|307595888|ref|YP_003902205.1| - 0.065 13.0 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain PIN PF01850.21 gi|307595888|ref|YP_003902205.1| - 0.079 13.5 0.2 0.6 10.6 0.0 2.1 2 0 0 2 2 2 0 PIN domain Arf PF00025.21 gi|307595888|ref|YP_003902205.1| - 0.08 12.4 1.2 5.3 6.5 0.2 2.5 2 1 0 2 2 2 0 ADP-ribosylation factor family APS_kinase PF01583.20 gi|307595888|ref|YP_003902205.1| - 0.092 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF2075 PF09848.9 gi|307595888|ref|YP_003902205.1| - 0.097 11.9 0.0 0.43 9.8 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NOG1 PF06858.14 gi|307595888|ref|YP_003902205.1| - 0.1 12.4 0.1 0.3 10.9 0.1 1.9 1 1 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) Thymidylate_kin PF02223.17 gi|307595888|ref|YP_003902205.1| - 0.17 11.5 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase TsaE PF02367.17 gi|307595888|ref|YP_003902205.1| - 0.2 11.6 0.1 0.87 9.6 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MFS_1 PF07690.16 gi|307595889|ref|YP_003902206.1| - 2.1e-17 63.1 38.3 6.9e-13 48.2 11.8 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily IncF PF17626.2 gi|307595890|ref|YP_003902207.1| - 0.26 11.7 4.8 0.22 11.9 2.8 1.9 1 1 1 2 2 2 0 Inclusion membrane protein F PTS_2-RNA PF01885.16 gi|307595891|ref|YP_003902208.1| - 8.4e-25 87.9 0.1 1e-24 87.6 0.1 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|307595891|ref|YP_003902208.1| - 0.12 11.9 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase catalytic domain CoA_trans PF01144.23 gi|307595893|ref|YP_003902210.1| - 2.5e-18 66.3 0.0 3.2e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Coenzyme A transferase CoA_trans PF01144.23 gi|307595894|ref|YP_003902211.1| - 9.9e-28 97.0 0.1 1.2e-27 96.7 0.1 1.1 1 0 0 1 1 1 1 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|307595894|ref|YP_003902211.1| - 0.019 13.4 0.0 0.025 12.9 0.0 1.1 1 0 0 1 1 1 0 Malonate decarboxylase, alpha subunit, transporter ThiS PF02597.20 gi|307595895|ref|YP_003902212.1| - 1.1e-11 45.2 0.0 1.3e-11 44.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family BRAP2 PF07576.12 gi|307595895|ref|YP_003902212.1| - 0.033 14.4 0.0 0.036 14.3 0.0 1.1 1 0 0 1 1 1 0 BRCA1-associated protein 2 SLBB PF10531.9 gi|307595895|ref|YP_003902212.1| - 0.053 13.4 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 SLBB domain Urm1 PF09138.11 gi|307595895|ref|YP_003902212.1| - 0.1 13.0 0.1 0.12 12.8 0.1 1.1 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Ub-Mut7C PF14451.6 gi|307595895|ref|YP_003902212.1| - 0.11 12.4 0.0 0.57 10.1 0.0 1.9 1 1 1 2 2 2 0 Mut7-C ubiquitin NUDIX PF00293.28 gi|307595897|ref|YP_003902214.1| - 2.3e-21 76.2 0.0 2.8e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|307595897|ref|YP_003902214.1| - 0.0052 16.8 0.0 0.0069 16.3 0.0 1.3 1 1 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|307595897|ref|YP_003902214.1| - 0.2 11.1 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4916) Acylphosphatase PF00708.18 gi|307595898|ref|YP_003902215.1| - 4.9e-29 100.6 0.2 5.4e-29 100.4 0.2 1.0 1 0 0 1 1 1 1 Acylphosphatase Pkinase PF00069.25 gi|307595899|ref|YP_003902216.1| - 1.1e-35 123.3 0.0 1.8e-35 122.6 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|307595899|ref|YP_003902216.1| - 6.8e-23 81.3 0.0 1e-22 80.7 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|307595899|ref|YP_003902216.1| - 0.097 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|307595899|ref|YP_003902216.1| - 0.15 11.9 0.0 1.9 8.3 0.0 2.0 1 1 1 2 2 2 0 Phosphotransferase enzyme family FHA PF00498.26 gi|307595900|ref|YP_003902217.1| - 5.5e-15 55.5 0.0 7.4e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|307595900|ref|YP_003902217.1| - 2e-07 31.2 0.0 3.1e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Ribosomal_S26e PF01283.19 gi|307595901|ref|YP_003902218.1| - 6.9e-29 100.4 2.7 8.6e-29 100.1 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.17 gi|307595901|ref|YP_003902218.1| - 0.0079 16.1 0.3 6 6.9 0.1 2.5 2 0 0 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger Nudix_N_2 PF14803.6 gi|307595901|ref|YP_003902218.1| - 0.016 15.1 0.3 2.1 8.4 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|307595901|ref|YP_003902218.1| - 0.049 13.1 0.1 0.049 13.1 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|307595901|ref|YP_003902218.1| - 0.098 12.9 0.1 0.25 11.5 0.1 1.7 1 0 0 1 1 1 0 C4-type zinc ribbon domain Lar_restr_allev PF14354.6 gi|307595901|ref|YP_003902218.1| - 0.12 12.8 0.8 0.58 10.6 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Radical_SAM PF04055.21 gi|307595902|ref|YP_003902219.1| - 2.7e-17 63.6 0.1 1.1e-15 58.5 0.0 2.6 3 1 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|307595902|ref|YP_003902219.1| - 0.0011 19.3 0.0 0.0021 18.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TF_Zn_Ribbon PF08271.12 gi|307595902|ref|YP_003902219.1| - 0.029 13.9 0.3 3.1 7.4 0.0 2.8 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.7 gi|307595902|ref|YP_003902219.1| - 0.78 9.8 0.0 0.78 9.8 0.0 2.9 3 1 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|307595902|ref|YP_003902219.1| - 2.4 7.7 7.8 1.3 8.6 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Molybdopterin PF00384.22 gi|307595904|ref|YP_003902221.1| - 3.4e-10 39.5 0.0 2.3e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|307595904|ref|YP_003902221.1| - 6.4e-06 26.2 0.1 0.0008 19.4 0.0 2.4 2 0 0 2 2 2 2 Molydopterin dinucleotide binding domain DAO PF01266.24 gi|307595905|ref|YP_003902222.1| - 3.9e-51 174.7 0.0 4.4e-51 174.5 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|307595905|ref|YP_003902222.1| - 8.6e-09 35.0 0.5 2.4e-07 30.2 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|307595905|ref|YP_003902222.1| - 3e-08 33.3 0.6 7.1e-07 28.7 0.6 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|307595905|ref|YP_003902222.1| - 3.1e-07 30.5 0.2 7.3e-07 29.3 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|307595905|ref|YP_003902222.1| - 2.1e-06 27.2 0.4 4.3e-06 26.1 0.1 1.6 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|307595905|ref|YP_003902222.1| - 2.8e-05 24.5 0.1 0.017 15.5 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|307595905|ref|YP_003902222.1| - 3.1e-05 23.4 0.9 5e-05 22.7 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|307595905|ref|YP_003902222.1| - 3.4e-05 23.4 0.2 4.6e-05 23.0 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|307595905|ref|YP_003902222.1| - 0.00033 19.8 0.8 0.0019 17.4 0.1 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|307595905|ref|YP_003902222.1| - 0.00073 18.4 1.0 0.0024 16.6 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|307595905|ref|YP_003902222.1| - 0.0023 18.4 2.2 0.27 11.8 0.4 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|307595905|ref|YP_003902222.1| - 0.0023 17.2 0.2 0.07 12.4 0.1 2.2 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|307595905|ref|YP_003902222.1| - 0.0026 17.7 0.2 0.0048 16.8 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|307595905|ref|YP_003902222.1| - 0.0046 16.6 0.4 0.0082 15.7 0.4 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.6 gi|307595905|ref|YP_003902222.1| - 0.0063 16.5 0.2 0.03 14.3 0.0 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding ApbA PF02558.16 gi|307595905|ref|YP_003902222.1| - 0.01 15.5 0.2 0.017 14.8 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|307595905|ref|YP_003902222.1| - 0.011 15.9 0.1 0.029 14.4 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|307595905|ref|YP_003902222.1| - 0.021 15.1 0.5 0.065 13.5 0.2 1.9 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 gi|307595905|ref|YP_003902222.1| - 0.04 14.4 0.0 0.086 13.4 0.0 1.6 1 1 0 1 1 1 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|307595905|ref|YP_003902222.1| - 0.041 14.2 0.1 0.11 12.8 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain GDI PF00996.18 gi|307595905|ref|YP_003902222.1| - 0.051 12.1 0.0 0.086 11.3 0.0 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor DUF5488 PF17590.2 gi|307595905|ref|YP_003902222.1| - 0.061 13.1 0.2 0.28 10.9 0.0 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5488) Trp_halogenase PF04820.14 gi|307595905|ref|YP_003902222.1| - 0.31 9.8 2.0 0.5 9.1 0.3 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Amidohydro_3 PF07969.11 gi|307595906|ref|YP_003902223.1| - 3.3e-112 376.4 0.0 3.8e-112 376.2 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|307595906|ref|YP_003902223.1| - 1.5e-16 60.7 0.0 8.9e-12 45.0 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase family AP_endonuc_2 PF01261.24 gi|307595906|ref|YP_003902223.1| - 0.048 13.1 0.0 0.14 11.6 0.0 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Acetyltransf_1 PF00583.25 gi|307595909|ref|YP_003902226.1| - 6.3e-17 61.9 0.1 1.3e-16 60.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|307595909|ref|YP_003902226.1| - 1.1e-08 35.1 0.0 2e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|307595909|ref|YP_003902226.1| - 8.7e-08 32.5 0.0 2.2e-07 31.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|307595909|ref|YP_003902226.1| - 1.7e-06 27.9 0.0 3.7e-06 26.8 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|307595909|ref|YP_003902226.1| - 1.8e-06 28.0 0.0 6.2e-06 26.3 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|307595909|ref|YP_003902226.1| - 8e-06 26.6 0.1 1.4e-05 25.7 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|307595909|ref|YP_003902226.1| - 0.00011 21.9 0.0 0.00089 18.9 0.0 2.0 2 0 0 2 2 2 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|307595909|ref|YP_003902226.1| - 0.00015 21.9 0.0 0.0019 18.3 0.0 2.2 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|307595909|ref|YP_003902226.1| - 0.0016 18.6 0.0 0.0032 17.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|307595909|ref|YP_003902226.1| - 0.0085 15.8 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|307595909|ref|YP_003902226.1| - 0.058 13.5 0.0 0.098 12.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CLP1_P PF16575.5 gi|307595910|ref|YP_003902227.1| - 3.2e-34 118.4 0.0 5.1e-34 117.7 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|307595910|ref|YP_003902227.1| - 0.042 13.9 0.0 0.056 13.5 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.27 gi|307595910|ref|YP_003902227.1| - 0.066 12.7 0.8 0.13 11.7 0.4 1.6 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain MobB PF03205.14 gi|307595910|ref|YP_003902227.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 gi|307595910|ref|YP_003902227.1| - 0.16 11.8 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4147 PF13660.6 gi|307595911|ref|YP_003902228.1| - 2.3e-70 236.7 0.1 3.2e-70 236.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|307595911|ref|YP_003902228.1| - 3.4e-27 94.8 3.4 1.6e-26 92.6 1.8 2.2 2 0 0 2 2 2 1 MOFRL family Enolase_like_N PF18374.1 gi|307595911|ref|YP_003902228.1| - 0.054 12.9 0.1 0.099 12.0 0.1 1.4 1 0 0 1 1 1 0 Enolase N-terminal domain-like SinI PF08671.10 gi|307595911|ref|YP_003902228.1| - 0.062 13.1 0.2 5 7.0 0.0 3.1 3 0 0 3 3 3 0 Anti-repressor SinI Translin PF01997.16 gi|307595912|ref|YP_003902229.1| - 9.7e-16 58.4 1.5 3.1e-14 53.5 1.5 2.1 1 1 0 1 1 1 1 Translin family PhoU PF01895.19 gi|307595912|ref|YP_003902229.1| - 0.035 14.6 1.4 0.097 13.1 0.1 2.3 2 1 0 2 2 2 0 PhoU domain Seryl_tRNA_N PF02403.22 gi|307595912|ref|YP_003902229.1| - 0.046 14.0 0.9 3.2 8.0 0.0 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DBINO PF13892.6 gi|307595912|ref|YP_003902229.1| - 0.088 13.2 0.1 0.89 9.9 0.0 2.0 2 0 0 2 2 2 0 DNA-binding domain AA_permease_2 PF13520.6 gi|307595913|ref|YP_003902230.1| - 4.1e-42 144.5 52.4 4.1e-42 144.5 52.4 2.7 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|307595913|ref|YP_003902230.1| - 4.4e-17 61.8 61.0 4.4e-17 61.8 61.0 2.5 1 1 1 2 2 2 1 Amino acid permease Deltameth_res PF16020.5 gi|307595913|ref|YP_003902230.1| - 5.9 6.8 7.7 2.4 8.1 0.0 4.3 3 1 1 4 4 4 0 Deltamethrin resistance Nitroreductase PF00881.24 gi|307595914|ref|YP_003902231.1| - 1.1e-22 80.9 0.0 1.3e-22 80.6 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF2258 PF10015.9 gi|307595915|ref|YP_003902232.1| - 3.5e-24 84.7 4.2 7.7e-24 83.6 2.0 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) DUF211 PF02680.14 gi|307595916|ref|YP_003902233.1| - 4.1e-31 107.0 5.2 4.5e-31 106.9 5.2 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 BRCT PF00533.26 gi|307595916|ref|YP_003902233.1| - 0.059 13.8 0.0 0.084 13.3 0.0 1.2 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain DUF4064 PF13273.6 gi|307595917|ref|YP_003902234.1| - 0.0078 16.5 6.7 0.014 15.7 6.3 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF4064) Tmemb_14 PF03647.13 gi|307595917|ref|YP_003902234.1| - 0.061 14.1 10.6 0.064 14.0 5.5 2.1 2 0 0 2 2 2 0 Transmembrane proteins 14C DUF2651 PF10852.8 gi|307595917|ref|YP_003902234.1| - 7.6 7.2 18.4 0.57 10.8 7.5 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF2651) Trm112p PF03966.16 gi|307595918|ref|YP_003902235.1| - 1.8e-13 50.9 2.9 1.8e-13 50.8 2.0 1.5 2 0 0 2 2 2 1 Trm112p-like protein zf-RING_7 PF02591.15 gi|307595918|ref|YP_003902235.1| - 0.92 9.7 4.8 1.5 9.0 1.5 3.0 2 1 1 3 3 3 0 C4-type zinc ribbon domain FAD_binding_2 PF00890.24 gi|307595919|ref|YP_003902236.1| - 5.1e-109 365.1 0.0 6.1e-109 364.9 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|307595919|ref|YP_003902236.1| - 1.9e-41 141.1 0.0 3.1e-41 140.3 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|307595919|ref|YP_003902236.1| - 1.1e-05 24.9 0.1 0.0031 16.8 0.1 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|307595919|ref|YP_003902236.1| - 0.0069 15.7 0.9 0.84 8.8 0.1 2.7 3 0 0 3 3 3 2 Thi4 family FAD_oxidored PF12831.7 gi|307595919|ref|YP_003902236.1| - 0.095 12.0 0.1 15 4.8 0.1 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|307595919|ref|YP_003902236.1| - 0.23 10.5 0.5 1.5 7.8 0.5 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Jnk-SapK_ap_N PF09744.9 gi|307595920|ref|YP_003902237.1| - 0.00027 21.2 13.4 0.00027 21.2 13.4 3.2 2 1 1 3 3 3 1 JNK_SAPK-associated protein-1 Baculo_PEP_C PF04513.12 gi|307595920|ref|YP_003902237.1| - 0.00037 20.6 13.5 0.0092 16.0 0.9 3.0 2 2 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.6 gi|307595920|ref|YP_003902237.1| - 0.00054 18.8 37.5 0.0023 16.6 24.4 2.2 1 1 1 2 2 2 2 AAA domain FliJ PF02050.16 gi|307595920|ref|YP_003902237.1| - 0.001 19.3 35.2 1.1 9.5 0.1 4.3 2 2 2 4 4 4 2 Flagellar FliJ protein GAS PF13851.6 gi|307595920|ref|YP_003902237.1| - 0.002 17.5 13.9 0.002 17.5 13.9 3.4 2 1 1 3 3 3 1 Growth-arrest specific micro-tubule binding YtxH PF12732.7 gi|307595920|ref|YP_003902237.1| - 0.0022 18.5 15.2 9.3e+03 -2.7 15.2 5.1 1 1 0 1 1 0 0 YtxH-like protein Seryl_tRNA_N PF02403.22 gi|307595920|ref|YP_003902237.1| - 0.003 17.8 9.9 0.003 17.8 9.9 4.8 2 2 2 4 4 4 3 Seryl-tRNA synthetase N-terminal domain Med29 PF11568.8 gi|307595920|ref|YP_003902237.1| - 0.004 17.4 7.0 0.15 12.3 2.0 2.6 1 1 1 2 2 2 1 Mediator complex subunit 29 Laminin_II PF06009.12 gi|307595920|ref|YP_003902237.1| - 0.0055 16.7 35.5 0.014 15.4 12.0 3.7 2 2 1 3 3 3 1 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|307595920|ref|YP_003902237.1| - 0.006 16.6 10.8 0.006 16.6 10.8 4.4 2 2 2 4 4 4 1 TPR/MLP1/MLP2-like protein ADIP PF11559.8 gi|307595920|ref|YP_003902237.1| - 0.0073 16.4 10.3 0.0073 16.4 10.3 3.8 1 1 3 4 4 4 1 Afadin- and alpha -actinin-Binding HsbA PF12296.8 gi|307595920|ref|YP_003902237.1| - 0.008 16.6 0.7 1.7 9.1 0.1 3.2 2 1 1 3 3 3 1 Hydrophobic surface binding protein A Rab5-bind PF09311.11 gi|307595920|ref|YP_003902237.1| - 0.0092 15.4 40.8 0.0094 15.4 10.4 3.3 2 1 1 3 3 3 1 Rabaptin-like protein APG6_N PF17675.1 gi|307595920|ref|YP_003902237.1| - 0.011 16.2 59.3 0.075 13.6 11.6 5.1 1 1 4 5 5 5 0 Apg6 coiled-coil region DUF1192 PF06698.11 gi|307595920|ref|YP_003902237.1| - 0.012 15.7 6.7 0.012 15.7 6.7 6.9 5 3 3 8 8 6 0 Protein of unknown function (DUF1192) Mod_r PF07200.13 gi|307595920|ref|YP_003902237.1| - 0.013 15.6 42.3 0.064 13.4 12.1 3.9 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Tup_N PF08581.10 gi|307595920|ref|YP_003902237.1| - 0.016 15.5 32.4 0.028 14.7 1.1 5.5 2 2 3 5 5 4 0 Tup N-terminal Nup54 PF13874.6 gi|307595920|ref|YP_003902237.1| - 0.018 15.1 32.4 0.15 12.1 1.3 3.8 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 TMF_TATA_bd PF12325.8 gi|307595920|ref|YP_003902237.1| - 0.02 15.1 15.6 0.02 15.1 15.6 4.2 2 2 2 4 4 3 0 TATA element modulatory factor 1 TATA binding Bacillus_HBL PF05791.11 gi|307595920|ref|YP_003902237.1| - 0.021 14.6 21.9 0.4 10.5 7.1 3.7 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) CENP-F_leu_zip PF10473.9 gi|307595920|ref|YP_003902237.1| - 0.03 14.3 58.6 0.22 11.6 18.9 4.8 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fez1 PF06818.15 gi|307595920|ref|YP_003902237.1| - 0.032 14.7 47.3 0.085 13.3 15.2 3.3 1 1 2 3 3 3 0 Fez1 DUF4407 PF14362.6 gi|307595920|ref|YP_003902237.1| - 0.05 13.0 25.9 0.077 12.3 3.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) ATG16 PF08614.11 gi|307595920|ref|YP_003902237.1| - 0.067 13.4 48.6 0.094 12.9 15.0 3.5 2 2 2 4 4 4 0 Autophagy protein 16 (ATG16) MtrB PF05440.12 gi|307595920|ref|YP_003902237.1| - 0.068 13.6 1.0 10 6.6 0.1 2.9 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Sec34 PF04136.15 gi|307595920|ref|YP_003902237.1| - 0.089 12.7 19.0 0.03 14.2 1.9 3.3 2 2 2 4 4 3 0 Sec34-like family DUF4201 PF13870.6 gi|307595920|ref|YP_003902237.1| - 0.09 12.5 53.6 0.081 12.7 10.2 4.2 2 2 2 4 4 4 0 Domain of unknown function (DUF4201) DinB_2 PF12867.7 gi|307595920|ref|YP_003902237.1| - 0.099 13.2 1.0 11 6.5 0.1 3.6 1 1 1 2 2 2 0 DinB superfamily Spc7 PF08317.11 gi|307595920|ref|YP_003902237.1| - 0.1 11.4 52.0 0.087 11.7 14.2 3.4 1 1 1 3 3 3 0 Spc7 kinetochore protein STAT_alpha PF01017.20 gi|307595920|ref|YP_003902237.1| - 0.11 12.4 36.7 0.058 13.3 8.6 3.5 2 2 1 3 3 3 0 STAT protein, all-alpha domain DUF948 PF06103.11 gi|307595920|ref|YP_003902237.1| - 0.15 12.3 10.4 2.5 8.4 0.2 4.3 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) MscS_porin PF12795.7 gi|307595920|ref|YP_003902237.1| - 0.16 11.5 38.3 0.024 14.2 7.0 3.2 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain LPP PF04728.13 gi|307595920|ref|YP_003902237.1| - 0.17 12.3 15.6 8.4 6.9 1.3 5.5 3 2 3 6 6 5 0 Lipoprotein leucine-zipper TMPIT PF07851.13 gi|307595920|ref|YP_003902237.1| - 0.2 10.9 31.5 0.043 13.0 4.2 3.3 2 1 1 3 3 3 0 TMPIT-like protein Atg14 PF10186.9 gi|307595920|ref|YP_003902237.1| - 0.22 10.6 51.3 0.33 10.0 15.1 2.8 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Cucumopine_C PF18631.1 gi|307595920|ref|YP_003902237.1| - 0.26 11.2 2.4 7.7 6.5 0.2 3.4 2 2 1 3 3 3 0 Cucumopine synthase C-terminal helical bundle domain DUF3450 PF11932.8 gi|307595920|ref|YP_003902237.1| - 0.26 10.6 39.1 0.068 12.5 12.7 3.4 1 1 1 3 3 3 0 Protein of unknown function (DUF3450) Filament PF00038.21 gi|307595920|ref|YP_003902237.1| - 0.27 10.8 45.3 0.35 10.4 39.6 3.0 1 1 1 2 2 2 0 Intermediate filament protein GLE1 PF07817.13 gi|307595920|ref|YP_003902237.1| - 0.38 9.9 17.8 0.043 13.0 2.1 3.1 2 2 1 3 3 3 0 GLE1-like protein DUF1664 PF07889.12 gi|307595920|ref|YP_003902237.1| - 0.43 10.6 28.3 0.33 11.0 3.4 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) OmpH PF03938.14 gi|307595920|ref|YP_003902237.1| - 0.54 10.6 45.6 0.26 11.6 7.9 3.6 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) NPV_P10 PF05531.12 gi|307595920|ref|YP_003902237.1| - 0.63 10.5 16.4 1.2 9.7 4.1 3.8 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Lectin_N PF03954.14 gi|307595920|ref|YP_003902237.1| - 0.65 9.7 13.6 1.1 9.0 3.1 2.9 3 1 0 3 3 2 0 Hepatic lectin, N-terminal domain RasGEF_N_2 PF14663.6 gi|307595920|ref|YP_003902237.1| - 0.83 10.1 6.5 0.27 11.7 1.6 2.5 2 1 0 2 2 2 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Ku_PK_bind PF08785.11 gi|307595920|ref|YP_003902237.1| - 0.91 9.7 10.8 0.071 13.3 2.7 2.9 1 1 0 3 3 2 0 Ku C terminal domain like DUF3584 PF12128.8 gi|307595920|ref|YP_003902237.1| - 0.91 6.9 40.8 0.26 8.7 9.6 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Herpes_UL92 PF03048.14 gi|307595920|ref|YP_003902237.1| - 1 9.1 5.9 9.8 5.9 0.7 2.4 2 0 0 2 2 2 0 UL92 family ERM PF00769.19 gi|307595920|ref|YP_003902237.1| - 1.3 8.8 47.7 0.097 12.5 11.8 2.9 1 1 0 2 2 2 0 Ezrin/radixin/moesin family APG17 PF04108.12 gi|307595920|ref|YP_003902237.1| - 1.4 8.0 25.7 0.36 9.9 4.1 3.3 1 1 2 3 3 3 0 Autophagy protein Apg17 FUSC PF04632.12 gi|307595920|ref|YP_003902237.1| - 1.4 7.3 8.6 1.2 7.6 0.1 2.2 1 1 0 2 2 2 0 Fusaric acid resistance protein family TACC_C PF05010.14 gi|307595920|ref|YP_003902237.1| - 1.4 8.6 40.5 0.033 14.0 10.0 2.7 2 1 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal SF-assemblin PF06705.11 gi|307595920|ref|YP_003902237.1| - 1.5 8.1 41.7 0.14 11.5 19.5 3.2 1 1 2 3 3 3 0 SF-assemblin/beta giardin DUF724 PF05266.14 gi|307595920|ref|YP_003902237.1| - 1.7 8.4 42.7 1.2 8.9 7.7 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF724) DUF2203 PF09969.9 gi|307595920|ref|YP_003902237.1| - 1.8 9.3 32.0 0.18 12.5 2.5 4.5 1 1 4 5 5 5 0 Uncharacterized conserved protein (DUF2203) Fib_alpha PF08702.10 gi|307595920|ref|YP_003902237.1| - 2 8.6 35.2 0.93 9.7 12.4 4.0 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Golgin_A5 PF09787.9 gi|307595920|ref|YP_003902237.1| - 2.2 7.7 44.5 0.63 9.4 13.1 2.5 1 1 0 2 2 2 0 Golgin subfamily A member 5 Spectrin PF00435.21 gi|307595920|ref|YP_003902237.1| - 2.6 8.6 31.8 1.1 9.7 9.8 4.5 2 2 3 5 5 5 0 Spectrin repeat DUF148 PF02520.17 gi|307595920|ref|YP_003902237.1| - 3 8.0 23.1 0.6 10.2 4.0 3.7 2 1 1 3 3 3 0 Domain of unknown function DUF148 Allexi_40kDa PF05549.11 gi|307595920|ref|YP_003902237.1| - 3.2 7.2 17.3 3.7 7.0 1.3 2.7 1 1 0 2 2 2 0 Allexivirus 40kDa protein GCN5L1 PF06320.13 gi|307595920|ref|YP_003902237.1| - 3.3 7.9 27.1 2.7 8.2 6.6 3.9 2 2 2 4 4 4 0 GCN5-like protein 1 (GCN5L1) HMMR_N PF15905.5 gi|307595920|ref|YP_003902237.1| - 3.8 6.9 49.5 0.55 9.6 23.2 2.4 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal UPF0184 PF03670.13 gi|307595920|ref|YP_003902237.1| - 3.9 7.9 19.5 0.19 12.1 1.7 4.5 2 2 3 5 5 5 0 Uncharacterised protein family (UPF0184) DUF885 PF05960.11 gi|307595920|ref|YP_003902237.1| - 4.2 6.9 13.1 0.68 9.5 3.8 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF885) YabA PF06156.13 gi|307595920|ref|YP_003902237.1| - 4.3 8.0 41.6 0.16 12.6 5.6 4.9 2 2 2 4 4 4 0 Initiation control protein YabA FlaC_arch PF05377.11 gi|307595920|ref|YP_003902237.1| - 4.4 7.8 40.0 0.78 10.2 5.9 6.7 2 2 6 8 8 8 0 Flagella accessory protein C (FlaC) Gon7 PF08738.10 gi|307595920|ref|YP_003902237.1| - 4.9 7.3 11.3 1.4 9.1 4.4 2.8 2 1 1 3 3 2 0 Gon7 family Phage_GPO PF05929.11 gi|307595920|ref|YP_003902237.1| - 5.3 6.6 17.3 2.7 7.6 2.2 2.5 2 1 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Orbi_NS3 PF01616.16 gi|307595920|ref|YP_003902237.1| - 5.4 6.7 6.5 0.45 10.2 0.4 2.2 2 1 0 2 2 1 0 Orbivirus NS3 Tho2 PF11262.8 gi|307595920|ref|YP_003902237.1| - 6.5 5.9 29.2 0.67 9.1 5.4 3.2 1 1 2 4 4 4 0 Transcription factor/nuclear export subunit protein 2 DivIC PF04977.15 gi|307595920|ref|YP_003902237.1| - 7.1 6.5 54.2 0.31 10.8 1.1 6.7 3 2 3 6 6 4 0 Septum formation initiator GldM_N PF12081.8 gi|307595920|ref|YP_003902237.1| - 9.2 6.3 23.8 11 6.0 6.1 3.7 1 1 1 2 2 2 0 GldM N-terminal domain CENP-H PF05837.12 gi|307595920|ref|YP_003902237.1| - 9.3 6.7 47.9 1.3 9.4 1.4 4.5 2 2 2 4 4 4 0 Centromere protein H (CENP-H) PMC2NT PF08066.12 gi|307595920|ref|YP_003902237.1| - 9.5 7.0 15.2 24 5.7 1.9 4.3 1 1 4 5 5 4 0 PMC2NT (NUC016) domain DUF373 PF04123.13 gi|307595921|ref|YP_003902238.1| - 6e-87 292.2 13.6 7.6e-87 291.9 13.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) TssN PF17555.2 gi|307595921|ref|YP_003902238.1| - 7.2 5.9 21.4 3.5 6.9 7.9 2.1 2 0 0 2 2 2 0 Type VI secretion system, TssN UPF0020 PF01170.18 gi|307595922|ref|YP_003902239.1| - 2.3e-14 53.5 0.0 1.8e-07 31.0 0.0 2.2 1 1 1 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|307595922|ref|YP_003902239.1| - 2.3e-10 40.6 0.0 8.4e-08 32.2 0.0 2.2 2 0 0 2 2 2 2 DNA methylase MethyltransfD12 PF02086.15 gi|307595922|ref|YP_003902239.1| - 1e-05 25.3 0.2 3.2e-05 23.8 0.0 1.8 1 1 1 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_11 PF08241.12 gi|307595922|ref|YP_003902239.1| - 0.00018 22.1 0.0 0.0012 19.5 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307595922|ref|YP_003902239.1| - 0.051 14.3 0.0 0.17 12.6 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|307595922|ref|YP_003902239.1| - 0.057 13.1 0.1 0.67 9.6 0.0 2.5 2 1 0 2 2 2 0 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|307595922|ref|YP_003902239.1| - 0.068 12.4 0.0 0.5 9.6 0.0 1.9 1 1 0 1 1 1 0 N-6 DNA Methylase OMPdecase PF00215.24 gi|307595923|ref|YP_003902240.1| - 2.9e-23 82.7 1.3 3.5e-23 82.4 1.3 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|307595923|ref|YP_003902240.1| - 0.00073 19.0 1.1 0.0055 16.1 1.0 2.2 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|307595923|ref|YP_003902240.1| - 0.011 15.5 0.2 0.088 12.6 0.0 2.0 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain 4HFCP_synth PF04476.13 gi|307595923|ref|YP_003902240.1| - 0.053 13.2 0.6 0.65 9.7 0.0 2.6 2 1 1 3 3 3 0 4-HFC-P synthase FATC PF02260.20 gi|307595923|ref|YP_003902240.1| - 0.25 11.2 0.4 2 8.3 0.1 2.5 3 0 0 3 3 3 0 FATC domain Prefoldin PF02996.17 gi|307595924|ref|YP_003902241.1| - 0.022 14.6 0.7 2.4 8.1 0.2 2.2 2 0 0 2 2 2 0 Prefoldin subunit DUF3755 PF12579.8 gi|307595924|ref|YP_003902241.1| - 0.024 14.3 0.2 0.068 12.8 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3755) Cortex-I_coil PF09304.10 gi|307595924|ref|YP_003902241.1| - 0.039 14.2 0.4 8.4 6.7 0.1 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil MerR-DNA-bind PF09278.11 gi|307595924|ref|YP_003902241.1| - 0.069 13.7 0.1 2.4 8.8 0.0 2.2 2 0 0 2 2 2 0 MerR, DNA binding PKcGMP_CC PF16808.5 gi|307595924|ref|YP_003902241.1| - 0.085 12.7 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase ABC_tran_CTD PF16326.5 gi|307595924|ref|YP_003902241.1| - 0.1 12.9 0.4 0.24 11.7 0.1 1.7 2 0 0 2 2 2 0 ABC transporter C-terminal domain tRNA_NucTransf2 PF09249.11 gi|307595925|ref|YP_003902242.1| - 4e-40 136.6 0.0 7.6e-40 135.7 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|307595925|ref|YP_003902242.1| - 6e-10 39.3 0.0 1.4e-09 38.1 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|307595925|ref|YP_003902242.1| - 2.6e-07 31.0 0.0 7.6e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Pescadillo_N PF06732.11 gi|307595925|ref|YP_003902242.1| - 0.088 12.3 0.1 0.48 9.9 0.1 1.9 2 0 0 2 2 2 0 Pescadillo N-terminus RPN7 PF10602.9 gi|307595926|ref|YP_003902243.1| - 0.0056 16.4 0.5 0.023 14.4 0.1 2.3 3 0 0 3 3 3 1 26S proteasome subunit RPN7 TPR_16 PF13432.6 gi|307595926|ref|YP_003902243.1| - 0.16 12.6 2.2 24 5.7 0.2 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|307595926|ref|YP_003902243.1| - 0.19 11.9 4.0 5.9 7.3 0.3 3.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|307595926|ref|YP_003902243.1| - 0.22 11.8 1.5 13 6.3 0.1 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|307595926|ref|YP_003902243.1| - 0.65 10.3 4.6 2.4 8.5 0.7 2.9 1 1 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|307595926|ref|YP_003902243.1| - 0.65 11.0 2.3 17 6.5 0.0 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat NTP_transferase PF00483.23 gi|307595927|ref|YP_003902244.1| - 1.8e-40 139.1 0.0 2.2e-40 138.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|307595927|ref|YP_003902244.1| - 1.4e-14 53.2 9.9 8.2e-07 28.5 0.6 3.9 2 2 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|307595927|ref|YP_003902244.1| - 7e-07 29.7 0.0 9.1e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|307595927|ref|YP_003902244.1| - 2.5e-06 27.1 4.5 0.0028 17.4 0.2 3.0 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|307595927|ref|YP_003902244.1| - 0.00051 18.3 0.5 0.00076 17.7 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Ribosomal_S13 PF00416.22 gi|307595928|ref|YP_003902245.1| - 1.4e-35 122.5 0.0 1.7e-35 122.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH PF00633.23 gi|307595928|ref|YP_003902245.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Acetyltransf_1 PF00583.25 gi|307595929|ref|YP_003902246.1| - 1.7e-13 50.8 0.0 2.2e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|307595929|ref|YP_003902246.1| - 3.3e-10 40.0 0.0 4.8e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|307595929|ref|YP_003902246.1| - 9.5e-07 29.2 0.0 2e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|307595929|ref|YP_003902246.1| - 0.00013 21.8 0.0 0.00044 20.2 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|307595929|ref|YP_003902246.1| - 0.00017 22.3 0.0 0.00024 21.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|307595929|ref|YP_003902246.1| - 0.00021 21.3 0.0 0.00037 20.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|307595929|ref|YP_003902246.1| - 0.00024 21.2 0.0 0.0023 18.0 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|307595929|ref|YP_003902246.1| - 0.003 17.2 0.0 0.0048 16.5 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_6 PF13480.7 gi|307595929|ref|YP_003902246.1| - 0.072 13.2 0.0 0.088 13.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain EMG1 PF03587.14 gi|307595930|ref|YP_003902247.1| - 2.7e-41 141.4 0.0 3.2e-41 141.1 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase SIS PF01380.22 gi|307595931|ref|YP_003902248.1| - 1.1e-44 151.4 0.4 3e-29 101.5 0.4 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|307595931|ref|YP_003902248.1| - 2.3e-24 86.1 0.0 4.5e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|307595931|ref|YP_003902248.1| - 5.1e-20 71.6 0.0 9.8e-20 70.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|307595931|ref|YP_003902248.1| - 3.2e-05 24.0 0.6 0.00016 21.7 0.3 2.2 1 1 0 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|307595931|ref|YP_003902248.1| - 0.011 14.6 0.0 0.025 13.5 0.0 1.5 1 0 0 1 1 1 0 Glutamine amidotransferases class-II FtsJ PF01728.19 gi|307595931|ref|YP_003902248.1| - 0.18 11.9 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase Hexapep PF00132.24 gi|307595932|ref|YP_003902249.1| - 4.9e-16 57.7 11.7 3.5e-06 26.5 2.5 6.0 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.23 gi|307595932|ref|YP_003902249.1| - 4.1e-12 46.2 0.0 5.7e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.6 gi|307595932|ref|YP_003902249.1| - 1.5e-06 27.9 12.1 0.032 14.0 0.1 4.8 2 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|307595932|ref|YP_003902249.1| - 5e-06 27.0 0.0 7.1e-06 26.5 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain DUF4954 PF16314.5 gi|307595932|ref|YP_003902249.1| - 0.0012 17.1 0.1 0.0018 16.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) PCNA_N PF00705.18 gi|307595934|ref|YP_003902251.1| - 4.8e-14 52.2 0.0 2e-13 50.2 0.0 2.0 1 1 1 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|307595934|ref|YP_003902251.1| - 2.4e-08 34.2 0.2 1.1e-07 32.0 0.1 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|307595934|ref|YP_003902251.1| - 0.0033 16.9 0.0 0.0049 16.4 0.0 1.3 1 0 0 1 1 1 1 Rad9 DNA_pol_phi PF04931.13 gi|307595934|ref|YP_003902251.1| - 6 4.8 8.4 9.2 4.2 8.4 1.3 1 0 0 1 1 1 0 DNA polymerase phi DUF1743 PF08489.11 gi|307595935|ref|YP_003902252.1| - 1.6e-24 86.2 0.0 2.8e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) Rad50_zn_hook PF04423.14 gi|307595935|ref|YP_003902252.1| - 0.038 13.8 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-TFIIB PF13453.6 gi|307595935|ref|YP_003902252.1| - 0.049 13.0 2.1 0.11 11.8 2.1 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|307595935|ref|YP_003902252.1| - 0.062 13.3 1.0 0.11 12.4 1.0 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|307595935|ref|YP_003902252.1| - 0.79 9.4 3.3 2 8.1 3.3 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RRN7 PF11781.8 gi|307595935|ref|YP_003902252.1| - 1.6 8.4 5.7 1.6 8.5 0.7 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Trehalose_PPase PF02358.16 gi|307595937|ref|YP_003902254.1| - 5.9e-08 32.1 0.0 1.8e-07 30.6 0.0 1.7 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|307595937|ref|YP_003902254.1| - 6.3e-07 29.4 0.0 2.7e-05 24.1 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|307595937|ref|YP_003902254.1| - 0.0017 18.8 0.0 0.038 14.4 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF3097 PF11296.8 gi|307595937|ref|YP_003902254.1| - 0.039 13.2 0.0 0.055 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3097) DUF521 PF04412.13 gi|307595938|ref|YP_003902255.1| - 6.6e-102 341.2 0.0 7.3e-102 341.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Acid_phosphat_B PF03767.14 gi|307595939|ref|YP_003902256.1| - 2.9e-11 43.4 0.0 3.7e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase PF00702.26 gi|307595939|ref|YP_003902256.1| - 2.2e-06 28.1 0.0 0.0072 16.6 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|307595939|ref|YP_003902256.1| - 0.00023 21.2 0.0 0.00052 20.1 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD_SAK_2 PF18143.1 gi|307595939|ref|YP_003902256.1| - 0.014 15.7 0.0 0.027 14.8 0.0 1.5 1 1 0 1 1 1 0 HAD domain in Swiss Army Knife RNA repair proteins HAD_2 PF13419.6 gi|307595939|ref|YP_003902256.1| - 0.027 14.6 0.0 3.3 7.8 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD_SAK_1 PF10307.9 gi|307595939|ref|YP_003902256.1| - 0.047 13.5 0.0 0.065 13.0 0.0 1.1 1 0 0 1 1 1 0 HAD domain family 1 in Swiss Army Knife RNA repair proteins Hydrolase_3 PF08282.12 gi|307595939|ref|YP_003902256.1| - 0.062 13.0 0.2 0.7 9.6 0.0 2.3 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase 5-nucleotidase PF06189.12 gi|307595939|ref|YP_003902256.1| - 0.082 11.8 0.1 2.7 6.8 0.0 2.4 2 1 0 2 2 2 0 5'-nucleotidase GATase_3 PF07685.14 gi|307595940|ref|YP_003902257.1| - 1.1e-10 41.5 0.0 2.2e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|307595940|ref|YP_003902257.1| - 4.3e-07 30.0 0.0 7.2e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|307595940|ref|YP_003902257.1| - 2.1e-05 24.5 0.7 0.0025 17.6 0.7 2.4 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|307595940|ref|YP_003902257.1| - 0.022 14.2 0.3 0.052 13.0 0.3 1.5 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase GATase_5 PF13507.6 gi|307595940|ref|YP_003902257.1| - 0.032 13.3 0.0 0.064 12.3 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain AAA_31 PF13614.6 gi|307595940|ref|YP_003902257.1| - 0.23 11.4 0.4 0.49 10.3 0.4 1.5 1 0 0 1 1 1 0 AAA domain CPBP PF02517.16 gi|307595941|ref|YP_003902258.1| - 5.8e-12 45.8 14.3 8.3e-11 42.1 14.2 2.7 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DNA_pol_B PF00136.21 gi|307595942|ref|YP_003902259.1| - 1.7e-50 172.0 0.0 3.4e-50 171.1 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|307595942|ref|YP_003902259.1| - 5.4e-32 111.2 1.8 5.6e-32 111.2 0.4 1.7 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|307595942|ref|YP_003902259.1| - 9.9e-05 22.1 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|307595942|ref|YP_003902259.1| - 0.00015 21.8 0.1 0.00015 21.8 0.1 1.9 2 0 0 2 2 2 1 RNase_H superfamily BRE PF06113.12 gi|307595942|ref|YP_003902259.1| - 0.0039 16.1 0.0 0.0094 14.8 0.0 1.5 1 0 0 1 1 1 1 Brain and reproductive organ-expressed protein (BRE) DNA_pol_B_2 PF03175.13 gi|307595942|ref|YP_003902259.1| - 0.026 13.4 0.0 0.054 12.4 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral DUF2286 PF10051.9 gi|307595943|ref|YP_003902260.1| - 3e-45 153.4 6.2 3.4e-45 153.2 6.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) TCTP PF00838.17 gi|307595943|ref|YP_003902260.1| - 0.0097 16.3 1.0 0.68 10.3 0.2 2.2 2 0 0 2 2 2 2 Translationally controlled tumour protein CDP-OH_P_transf PF01066.21 gi|307595944|ref|YP_003902261.1| - 9.7e-13 48.7 7.3 2.1e-11 44.4 1.6 2.6 2 1 0 2 2 2 2 CDP-alcohol phosphatidyltransferase NapE PF06796.11 gi|307595944|ref|YP_003902261.1| - 0.45 10.1 2.5 0.97 9.0 2.5 1.5 1 0 0 1 1 1 0 Periplasmic nitrate reductase protein NapE PadR PF03551.14 gi|307595945|ref|YP_003902262.1| - 4.1e-09 36.3 0.1 6.1e-09 35.7 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_12 PF08461.10 gi|307595945|ref|YP_003902262.1| - 0.006 16.5 0.2 0.0088 16.0 0.2 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain RTP PF02334.16 gi|307595945|ref|YP_003902262.1| - 0.019 15.6 0.2 0.029 15.0 0.2 1.4 1 1 0 1 1 1 0 Replication terminator protein TrmB PF01978.19 gi|307595945|ref|YP_003902262.1| - 0.11 12.4 0.3 0.26 11.2 0.2 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB ELFV_dehydrog PF00208.21 gi|307595946|ref|YP_003902263.1| - 3e-72 243.2 0.2 4e-72 242.9 0.2 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|307595946|ref|YP_003902263.1| - 3.2e-54 182.3 0.0 5.6e-54 181.5 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|307595946|ref|YP_003902263.1| - 0.0013 18.1 0.1 0.0022 17.4 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|307595946|ref|YP_003902263.1| - 0.046 13.8 0.6 0.093 12.8 0.4 1.6 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|307595946|ref|YP_003902263.1| - 0.079 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Bac_GDH PF05088.12 gi|307595946|ref|YP_003902263.1| - 0.13 9.7 0.0 0.18 9.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase CTP_transf_like PF01467.26 gi|307595950|ref|YP_003902267.1| - 1.7e-10 41.3 0.0 7.8e-10 39.1 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_synt PF00285.21 gi|307595951|ref|YP_003902268.1| - 4e-127 424.2 0.0 4.6e-127 424.0 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain NucS PF01939.16 gi|307595954|ref|YP_003902271.1| - 1.2e-57 195.0 0.0 1.6e-57 194.5 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS UPF0102 PF02021.17 gi|307595954|ref|YP_003902271.1| - 0.00011 22.3 0.1 0.00033 20.8 0.0 1.8 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 PDDEXK_9 PF08011.11 gi|307595954|ref|YP_003902271.1| - 0.0019 18.1 0.0 0.0033 17.3 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.6 gi|307595954|ref|YP_003902271.1| - 0.0026 18.0 0.1 0.0038 17.4 0.1 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N PF04313.14 gi|307595954|ref|YP_003902271.1| - 0.004 17.1 0.1 0.0094 15.9 0.1 1.5 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Mrr_cat PF04471.12 gi|307595954|ref|YP_003902271.1| - 0.0043 17.0 0.0 0.0072 16.3 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease Cas_Cas4 PF01930.17 gi|307595954|ref|YP_003902271.1| - 0.0069 16.5 0.0 0.012 15.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 HSDR_N_2 PF13588.6 gi|307595954|ref|YP_003902271.1| - 0.018 15.0 0.0 0.031 14.3 0.0 1.4 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) YhcG_C PF06250.11 gi|307595954|ref|YP_003902271.1| - 0.15 11.9 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain SpoIIM PF01944.17 gi|307595955|ref|YP_003902272.1| - 0.73 9.9 11.3 1 9.4 11.3 1.2 1 0 0 1 1 1 0 Stage II sporulation protein M Pribosyltran PF00156.27 gi|307595956|ref|YP_003902273.1| - 5.9e-17 61.6 0.0 8.9e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|307595956|ref|YP_003902273.1| - 0.0017 17.8 0.0 0.0027 17.2 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase EamA PF00892.20 gi|307595957|ref|YP_003902274.1| - 2.7e-28 98.9 45.1 1.1e-16 61.2 18.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family ERCC4 PF02732.15 gi|307595958|ref|YP_003902275.1| - 4.6e-20 72.4 0.1 1.4e-19 70.9 0.0 1.8 2 0 0 2 2 2 1 ERCC4 domain HHH_5 PF14520.6 gi|307595958|ref|YP_003902275.1| - 7.1e-05 23.3 0.1 0.00026 21.5 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|307595958|ref|YP_003902275.1| - 0.00013 21.7 0.0 0.00038 20.2 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|307595958|ref|YP_003902275.1| - 0.015 15.6 0.0 0.05 14.0 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif 5_3_exonuc PF01367.20 gi|307595958|ref|YP_003902275.1| - 0.085 13.5 0.0 0.21 12.2 0.0 1.7 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold TFIIS_C PF01096.18 gi|307595959|ref|YP_003902276.1| - 2.2e-05 24.2 1.4 2.7e-05 23.9 1.4 1.2 1 0 0 1 1 1 1 Transcription factor S-II (TFIIS) DUF929 PF06053.11 gi|307595959|ref|YP_003902276.1| - 0.006 15.9 0.2 0.006 15.9 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF929) DUF35_N PF12172.8 gi|307595959|ref|YP_003902276.1| - 0.0061 16.4 0.6 0.25 11.3 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|307595959|ref|YP_003902276.1| - 0.018 14.4 8.5 0.12 11.8 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|307595959|ref|YP_003902276.1| - 0.019 14.9 0.9 0.084 12.8 1.0 1.8 1 1 1 2 2 2 0 Cysteine-rich CPXCG CpXC PF14353.6 gi|307595959|ref|YP_003902276.1| - 0.019 15.0 0.9 0.39 10.8 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Elf1 PF05129.13 gi|307595959|ref|YP_003902276.1| - 0.025 14.6 0.5 0.028 14.5 0.5 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_4 PF13717.6 gi|307595959|ref|YP_003902276.1| - 0.049 13.6 5.3 1.5 8.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|307595959|ref|YP_003902276.1| - 0.064 13.0 5.6 0.85 9.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF951 PF06107.11 gi|307595959|ref|YP_003902276.1| - 0.08 12.9 0.6 0.27 11.2 0.6 1.8 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_5 PF13719.6 gi|307595959|ref|YP_003902276.1| - 0.3 10.9 4.4 5.5 6.8 0.5 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|307595959|ref|YP_003902276.1| - 1 9.6 7.7 1.8 8.8 0.9 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-C2H2 PF00096.26 gi|307595959|ref|YP_003902276.1| - 1.1 9.9 7.8 8.9 7.0 2.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type CBFD_NFYB_HMF PF00808.23 gi|307595960|ref|YP_003902277.1| - 6.5e-14 52.0 0.1 7.5e-14 51.8 0.1 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|307595960|ref|YP_003902277.1| - 1.3e-08 35.3 0.1 1.4e-08 35.1 0.1 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|307595960|ref|YP_003902277.1| - 1.6e-05 25.0 0.0 1.7e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|307595960|ref|YP_003902277.1| - 2.9e-05 24.4 0.1 3.4e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein TAF PF02969.17 gi|307595960|ref|YP_003902277.1| - 3.7e-05 23.8 0.1 3.9e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.15 gi|307595960|ref|YP_003902277.1| - 8.6e-05 22.6 0.0 0.00011 22.3 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID-18kDa PF02269.16 gi|307595960|ref|YP_003902277.1| - 0.01 15.9 0.0 0.011 15.7 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Bromo_TP PF07524.13 gi|307595960|ref|YP_003902277.1| - 0.023 14.7 0.0 0.029 14.4 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated Bromo_TP_like PF17027.5 gi|307595960|ref|YP_003902277.1| - 0.031 14.4 0.0 0.037 14.2 0.0 1.2 1 1 0 1 1 1 0 Histone-fold protein PCP_red PF08369.10 gi|307595960|ref|YP_003902277.1| - 0.038 14.2 0.2 0.37 11.0 0.1 2.0 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit DUF1931 PF09123.11 gi|307595960|ref|YP_003902277.1| - 0.079 13.1 0.2 0.088 12.9 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) GATase_6 PF13522.6 gi|307595960|ref|YP_003902277.1| - 0.085 13.1 0.0 0.097 12.9 0.0 1.1 1 0 0 1 1 1 0 Glutamine amidotransferase domain AdoMet_dc PF02675.15 gi|307595961|ref|YP_003902278.1| - 8.1e-34 116.1 0.0 9.3e-34 115.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.6 gi|307595961|ref|YP_003902278.1| - 0.015 15.0 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Stage VI sporulation protein F CMAS PF02353.20 gi|307595962|ref|YP_003902279.1| - 0.0027 17.0 0.0 0.0031 16.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|307595962|ref|YP_003902279.1| - 0.013 15.3 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|307595962|ref|YP_003902279.1| - 0.032 13.9 0.0 0.09 12.4 0.0 1.8 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 N6_Mtase PF02384.16 gi|307595962|ref|YP_003902279.1| - 0.063 12.5 0.0 0.084 12.1 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase Diphthamide_syn PF01866.17 gi|307595963|ref|YP_003902280.1| - 3.1e-36 125.4 0.0 4.6e-36 124.8 0.0 1.2 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Glyco_hydro_4C PF11975.8 gi|307595963|ref|YP_003902280.1| - 0.19 11.8 0.0 0.29 11.2 0.0 1.2 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Cpn60_TCP1 PF00118.24 gi|307595964|ref|YP_003902281.1| - 8.5e-178 592.0 12.1 9.7e-178 591.8 12.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3422 PF11902.8 gi|307595965|ref|YP_003902282.1| - 0.89 8.6 6.0 0.47 9.5 2.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3422) T2SSE PF00437.20 gi|307595966|ref|YP_003902283.1| - 6.5e-21 74.6 0.1 1.2e-20 73.8 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|307595966|ref|YP_003902283.1| - 0.003 17.3 0.0 0.0084 15.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|307595966|ref|YP_003902283.1| - 0.0034 17.6 0.0 0.0098 16.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|307595966|ref|YP_003902283.1| - 0.0053 17.0 0.2 0.055 13.7 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|307595966|ref|YP_003902283.1| - 0.012 16.0 0.0 0.028 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|307595966|ref|YP_003902283.1| - 0.021 14.2 0.1 0.052 12.9 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|307595966|ref|YP_003902283.1| - 0.031 14.8 0.0 0.13 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|307595966|ref|YP_003902283.1| - 0.034 14.2 0.0 0.11 12.6 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|307595966|ref|YP_003902283.1| - 0.041 14.4 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|307595966|ref|YP_003902283.1| - 0.081 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|307595966|ref|YP_003902283.1| - 0.087 13.3 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter KTI12 PF08433.10 gi|307595966|ref|YP_003902283.1| - 0.12 11.8 0.0 0.44 9.9 0.0 2.0 1 0 0 1 1 1 0 Chromatin associated protein KTI12 HTH_12 PF08461.10 gi|307595967|ref|YP_003902284.1| - 0.00098 19.0 0.4 0.29 11.1 0.0 2.6 2 0 0 2 2 2 2 Ribonuclease R winged-helix domain TFIIB PF00382.19 gi|307595967|ref|YP_003902284.1| - 0.0016 18.4 0.3 0.051 13.6 0.0 2.7 2 1 1 3 3 3 1 Transcription factor TFIIB repeat MerR PF00376.23 gi|307595967|ref|YP_003902284.1| - 0.027 14.2 0.0 0.067 13.0 0.0 1.7 1 0 0 1 1 1 0 MerR family regulatory protein MerR_1 PF13411.6 gi|307595967|ref|YP_003902284.1| - 0.085 13.0 0.1 0.32 11.1 0.0 2.0 2 0 0 2 2 2 0 MerR HTH family regulatory protein RNA_pol_RpbG PF16992.5 gi|307595968|ref|YP_003902285.1| - 2.5e-05 24.3 0.7 3.1e-05 24.0 0.7 1.1 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G PilZ PF07238.14 gi|307595968|ref|YP_003902285.1| - 0.06 13.7 0.1 14 6.1 0.0 2.1 1 1 1 2 2 2 0 PilZ domain Lsm_C PF14894.6 gi|307595969|ref|YP_003902286.1| - 1.2e-24 85.8 1.2 2.9e-24 84.6 0.4 1.9 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.22 gi|307595969|ref|YP_003902286.1| - 5.3e-08 32.4 0.8 9.9e-08 31.6 0.8 1.5 1 0 0 1 1 1 1 LSM domain Gemin6 PF06372.12 gi|307595969|ref|YP_003902286.1| - 1.8e-05 24.3 0.1 2.3e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 Gemin6 protein SM-ATX PF14438.6 gi|307595969|ref|YP_003902286.1| - 0.00017 21.7 0.1 0.0003 20.8 0.1 1.5 1 0 0 1 1 1 1 Ataxin 2 SM domain BPL_C PF02237.17 gi|307595969|ref|YP_003902286.1| - 0.0076 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain LSM14 PF12701.7 gi|307595969|ref|YP_003902286.1| - 0.03 14.4 0.4 0.085 13.0 0.4 2.0 1 1 0 1 1 1 0 Scd6-like Sm domain FAM70 PF14967.6 gi|307595969|ref|YP_003902286.1| - 0.049 13.1 0.2 0.11 12.0 0.2 1.4 1 1 0 1 1 1 0 FAM70 protein TGT PF01702.18 gi|307595970|ref|YP_003902287.1| - 1.7e-74 251.1 0.0 2.7e-74 250.4 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|307595970|ref|YP_003902287.1| - 1.9e-12 47.3 0.0 3e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|307595971|ref|YP_003902288.1| - 2.7e-38 132.1 0.0 3.1e-38 131.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family SlyX PF04102.12 gi|307595971|ref|YP_003902288.1| - 0.16 12.6 0.0 0.27 11.9 0.0 1.4 1 0 0 1 1 1 0 SlyX Ribosomal_S17e PF00833.18 gi|307595972|ref|YP_003902289.1| - 2.1e-18 66.4 0.0 2.1e-18 66.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 CSD2 PF17876.1 gi|307595972|ref|YP_003902289.1| - 0.039 14.1 0.0 0.044 14.0 0.0 1.2 1 0 0 1 1 1 0 Cold shock domain DUF4290 PF14123.6 gi|307595972|ref|YP_003902289.1| - 0.05 13.1 0.3 0.066 12.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) HSP20 PF00011.21 gi|307595973|ref|YP_003902290.1| - 5.6e-12 45.7 1.7 2.2e-10 40.6 1.7 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|307595973|ref|YP_003902290.1| - 2.3e-10 39.9 0.1 3.2e-10 39.4 0.1 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|307595973|ref|YP_003902290.1| - 0.001 20.0 0.3 0.0018 19.2 0.2 1.5 1 1 0 1 1 1 1 CS domain GvpH PF05455.11 gi|307595973|ref|YP_003902290.1| - 0.013 15.5 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 GvpH tRNA-synt_1g PF09334.11 gi|307595974|ref|YP_003902291.1| - 5.5e-151 502.8 0.0 6.6e-151 502.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|307595974|ref|YP_003902291.1| - 1.3e-12 46.8 0.1 4.1e-06 25.3 0.0 4.0 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|307595974|ref|YP_003902291.1| - 8.2e-05 22.6 0.2 0.00027 20.9 0.0 1.9 3 0 0 3 3 3 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|307595974|ref|YP_003902291.1| - 0.00042 19.8 0.0 0.012 15.0 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|307595974|ref|YP_003902291.1| - 0.14 11.1 0.0 3.9 6.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf-RING_7 PF02591.15 gi|307595974|ref|YP_003902291.1| - 0.41 10.9 6.9 2 8.7 0.4 3.6 3 0 0 3 3 3 0 C4-type zinc ribbon domain DZR PF12773.7 gi|307595974|ref|YP_003902291.1| - 0.44 10.6 3.5 1.3 9.1 3.2 1.6 1 1 1 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|307595974|ref|YP_003902291.1| - 3.8 7.1 5.0 2.6 7.7 1.8 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding dUTPase PF00692.19 gi|307595975|ref|YP_003902292.1| - 3.6e-15 55.8 0.0 9.3e-14 51.2 0.0 2.1 1 1 1 2 2 2 1 dUTPase DCD PF06559.11 gi|307595975|ref|YP_003902292.1| - 0.0037 16.1 0.0 3.9 6.2 0.0 2.9 2 1 0 3 3 3 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF2067 PF09840.9 gi|307595976|ref|YP_003902293.1| - 0.031 13.9 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) PALP PF00291.25 gi|307595977|ref|YP_003902294.1| - 4.9e-77 259.2 1.7 6.3e-77 258.9 1.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Lactamase_B_3 PF13483.6 gi|307595977|ref|YP_003902294.1| - 0.0059 16.5 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Oxidored_nitro PF00148.19 gi|307595977|ref|YP_003902294.1| - 0.047 12.4 0.6 0.99 8.1 0.1 2.1 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase RNase_PH_C PF03725.15 gi|307595977|ref|YP_003902294.1| - 0.09 12.8 0.3 0.4 10.7 0.0 2.2 3 0 0 3 3 3 0 3' exoribonuclease family, domain 2 DUF4307 PF14155.6 gi|307595978|ref|YP_003902295.1| - 0.2 11.5 0.9 0.95 9.3 0.9 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF2574 PF10836.8 gi|307595978|ref|YP_003902295.1| - 1.2 9.0 4.2 2.1 8.3 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2574) AhpC-TSA PF00578.21 gi|307595981|ref|YP_003902298.1| - 5.3e-35 120.0 0.0 6.5e-35 119.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|307595981|ref|YP_003902298.1| - 3.1e-21 75.6 0.0 3.7e-21 75.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|307595981|ref|YP_003902298.1| - 0.0066 16.4 0.0 0.0085 16.0 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.6 gi|307595981|ref|YP_003902298.1| - 0.012 15.7 0.0 0.14 12.3 0.0 2.1 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|307595981|ref|YP_003902298.1| - 0.084 12.4 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Oxidored_molyb PF00174.19 gi|307595982|ref|YP_003902299.1| - 4.8e-42 143.5 0.1 1.3e-41 142.1 0.1 1.7 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Spo0A_C PF08769.11 gi|307595982|ref|YP_003902299.1| - 0.0039 17.2 0.0 0.012 15.6 0.0 1.8 1 0 0 1 1 1 1 Sporulation initiation factor Spo0A C terminal TAT_signal PF10518.9 gi|307595982|ref|YP_003902299.1| - 0.024 14.5 3.0 0.039 13.8 3.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Ni_hydr_CYTB PF01292.20 gi|307595983|ref|YP_003902300.1| - 0.00079 19.1 5.2 0.00079 19.1 5.2 1.5 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 DnaGprimase_HBD PF16730.5 gi|307595984|ref|YP_003902301.1| - 0.0037 17.3 0.2 0.0058 16.7 0.1 1.4 1 1 0 1 1 1 1 DnaG-primase C-terminal, helicase-binding domain GerD PF17898.1 gi|307595984|ref|YP_003902301.1| - 0.029 14.3 0.0 0.051 13.5 0.0 1.5 1 1 0 1 1 1 0 Spore germination GerD central core domain TetR_C_11 PF16859.5 gi|307595984|ref|YP_003902301.1| - 0.099 13.0 0.0 0.39 11.1 0.0 1.7 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF1039 PF06287.11 gi|307595984|ref|YP_003902301.1| - 0.11 12.9 0.3 1.1 9.7 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1039) UNC45-central PF11701.8 gi|307595985|ref|YP_003902302.1| - 0.036 14.0 0.0 0.041 13.9 0.0 1.1 1 0 0 1 1 1 0 Myosin-binding striated muscle assembly central PAPS_reduct PF01507.19 gi|307595986|ref|YP_003902303.1| - 1.8e-40 138.8 0.0 2.5e-40 138.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4 PF00037.27 gi|307595986|ref|YP_003902303.1| - 1.2e-06 28.1 10.1 2.2e-05 24.1 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307595986|ref|YP_003902303.1| - 7.7e-06 26.4 7.7 1.6e-05 25.4 7.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307595986|ref|YP_003902303.1| - 2.9e-05 23.9 10.8 0.00059 19.8 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307595986|ref|YP_003902303.1| - 3.4e-05 23.9 11.9 0.0035 17.4 2.3 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307595986|ref|YP_003902303.1| - 9.7e-05 22.5 7.7 0.00024 21.2 7.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307595986|ref|YP_003902303.1| - 0.00018 21.6 10.6 0.016 15.4 2.3 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307595986|ref|YP_003902303.1| - 0.00089 19.2 12.9 0.00089 19.2 0.9 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|307595986|ref|YP_003902303.1| - 0.00091 20.1 10.2 0.0085 17.0 0.8 2.8 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|307595986|ref|YP_003902303.1| - 0.0056 17.1 8.3 0.1 13.0 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|307595986|ref|YP_003902303.1| - 0.0063 16.7 3.0 0.013 15.7 3.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307595986|ref|YP_003902303.1| - 0.032 14.8 6.9 1.2 9.7 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|307595986|ref|YP_003902303.1| - 0.036 15.0 14.2 0.88 10.7 3.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|307595986|ref|YP_003902303.1| - 4 8.1 13.1 0.11 13.0 2.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Rnk_N PF14760.6 gi|307595988|ref|YP_003902305.1| - 0.045 14.2 0.1 0.069 13.6 0.1 1.3 1 0 0 1 1 1 0 Rnk N-terminus PG_binding_1 PF01471.18 gi|307595989|ref|YP_003902306.1| - 0.016 15.4 0.0 0.025 14.8 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain HTH_Tnp_Tc5 PF03221.16 gi|307595991|ref|YP_003902308.1| - 0.059 13.4 0.0 0.39 10.8 0.0 2.1 2 1 0 2 2 2 0 Tc5 transposase DNA-binding domain AAA_16 PF13191.6 gi|307595992|ref|YP_003902309.1| - 0.032 14.6 0.2 0.1 13.0 0.1 1.8 2 0 0 2 2 2 0 AAA ATPase domain DUF2379 PF09543.10 gi|307595992|ref|YP_003902309.1| - 0.036 14.3 1.8 0.1 12.8 0.7 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2379) Aminotran_5 PF00266.19 gi|307595993|ref|YP_003902310.1| - 1.1e-33 116.8 0.0 3.9e-33 114.9 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|307595993|ref|YP_003902310.1| - 6.4e-10 38.7 0.0 5.9e-08 32.3 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|307595993|ref|YP_003902310.1| - 3.3e-07 29.9 0.0 5.3e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|307595993|ref|YP_003902310.1| - 0.00026 19.7 0.0 0.00043 18.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme QueC PF06508.13 gi|307595994|ref|YP_003902311.1| - 4.7e-47 160.2 0.0 5.5e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|307595994|ref|YP_003902311.1| - 2.1e-12 47.1 0.0 3.8e-10 39.7 0.0 2.3 2 1 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|307595994|ref|YP_003902311.1| - 6.1e-06 25.3 0.0 1.5e-05 24.0 0.0 1.6 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|307595994|ref|YP_003902311.1| - 2.8e-05 24.0 0.0 3.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|307595994|ref|YP_003902311.1| - 0.0002 20.5 0.0 0.022 13.9 0.0 2.1 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.20 gi|307595994|ref|YP_003902311.1| - 0.0012 18.7 0.0 0.0024 17.7 0.0 1.6 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.19 gi|307595994|ref|YP_003902311.1| - 0.0023 17.3 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase Mu-like_Com PF10122.9 gi|307595994|ref|YP_003902311.1| - 0.033 13.6 0.1 0.07 12.6 0.1 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com Diphthami_syn_2 PF01902.17 gi|307595994|ref|YP_003902311.1| - 0.17 11.4 0.0 1.1 8.7 0.0 2.2 2 1 0 2 2 2 0 Diphthamide synthase MmgE_PrpD PF03972.14 gi|307595995|ref|YP_003902312.1| - 1.1e-137 459.2 0.0 1.3e-137 458.9 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Topo-VIb_trans PF09239.11 gi|307595996|ref|YP_003902313.1| - 2.3e-61 206.3 0.1 3.9e-61 205.5 0.1 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|307595996|ref|YP_003902313.1| - 2e-12 47.6 0.0 4.3e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|307595996|ref|YP_003902313.1| - 3.7e-09 36.5 0.0 8.5e-09 35.4 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|307595996|ref|YP_003902313.1| - 0.016 14.0 0.0 0.043 12.6 0.0 1.6 2 0 0 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) Trypan_glycop PF00913.19 gi|307595996|ref|YP_003902313.1| - 0.087 12.1 0.3 0.14 11.4 0.3 1.2 1 0 0 1 1 1 0 Trypanosome variant surface glycoprotein (A-type) DUF123 PF01986.16 gi|307595997|ref|YP_003902314.1| - 6.6e-12 45.8 0.0 8.8e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 Stealth_CR4 PF17103.5 gi|307595997|ref|YP_003902314.1| - 0.085 12.8 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 Stealth protein CR4, conserved region 4 GGDEF_2 PF17853.1 gi|307595997|ref|YP_003902314.1| - 0.12 12.6 0.0 0.15 12.3 0.0 1.4 1 1 0 1 1 1 0 GGDEF-like domain TruB_N PF01509.18 gi|307595999|ref|YP_003902316.1| - 1.2e-24 87.4 0.0 5.3e-21 75.5 0.0 3.3 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|307595999|ref|YP_003902316.1| - 1.1e-21 76.7 0.3 2.3e-21 75.7 0.1 1.7 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|307595999|ref|YP_003902316.1| - 8.4e-21 73.7 0.4 1.6e-20 72.8 0.4 1.5 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|307595999|ref|YP_003902316.1| - 3.5e-14 52.6 0.1 9e-14 51.3 0.1 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF3173 PF11372.8 gi|307595999|ref|YP_003902316.1| - 0.0034 17.2 0.1 0.0065 16.3 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3173) UPF0113 PF03657.13 gi|307595999|ref|YP_003902316.1| - 0.066 13.5 0.2 0.23 11.7 0.1 1.9 2 0 0 2 2 2 0 UPF0113 PUA domain Radical_SAM PF04055.21 gi|307596000|ref|YP_003902317.1| - 2.4e-25 89.9 0.0 4.4e-25 89.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|307596000|ref|YP_003902317.1| - 6.2e-09 36.2 0.6 1.4e-08 35.1 0.6 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|307596000|ref|YP_003902317.1| - 5.5e-08 33.2 0.0 9.9e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|307596000|ref|YP_003902317.1| - 3.1e-05 24.1 0.0 5.3e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain FR47 PF08445.10 gi|307596001|ref|YP_003902318.1| - 9.3e-15 54.4 0.0 1.4e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.25 gi|307596001|ref|YP_003902318.1| - 1.8e-11 44.3 0.1 3.9e-11 43.2 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|307596001|ref|YP_003902318.1| - 1.7e-07 31.2 0.0 2.8e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|307596001|ref|YP_003902318.1| - 2.3e-07 30.6 0.0 3.4e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_7 PF13508.7 gi|307596001|ref|YP_003902318.1| - 1.3e-05 25.5 0.0 2.8e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|307596001|ref|YP_003902318.1| - 0.0041 16.6 0.0 0.01 15.3 0.0 1.5 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_3 PF13302.7 gi|307596001|ref|YP_003902318.1| - 0.0087 16.7 0.0 0.018 15.7 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|307596001|ref|YP_003902318.1| - 0.018 15.1 0.0 0.095 12.8 0.0 2.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.10 gi|307596001|ref|YP_003902318.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region Acetyltransf_CG PF14542.6 gi|307596001|ref|YP_003902318.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DJ-1_PfpI PF01965.24 gi|307596002|ref|YP_003902319.1| - 1.2e-50 171.6 0.0 1.4e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|307596002|ref|YP_003902319.1| - 0.00045 19.9 0.0 0.00082 19.0 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|307596002|ref|YP_003902319.1| - 0.002 17.8 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|307596002|ref|YP_003902319.1| - 0.0025 17.6 0.0 0.0032 17.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|307596002|ref|YP_003902319.1| - 0.0076 15.9 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 1 ThiJ/PfpI family-like FAA_hydrolase PF01557.18 gi|307596003|ref|YP_003902320.1| - 1.2e-51 175.5 0.0 1.5e-51 175.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Lactamase_B PF00753.27 gi|307596004|ref|YP_003902321.1| - 1.8e-25 90.1 0.1 2.6e-25 89.6 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily ABC_tran PF00005.27 gi|307596005|ref|YP_003902322.1| - 1.4e-24 87.2 0.0 2e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307596005|ref|YP_003902322.1| - 2.2e-10 40.8 0.0 3.4e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|307596005|ref|YP_003902322.1| - 1.5e-05 24.8 0.3 0.00011 22.0 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307596005|ref|YP_003902322.1| - 0.001 19.5 0.0 0.0014 19.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|307596005|ref|YP_003902322.1| - 0.0017 18.8 0.0 0.012 16.1 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|307596005|ref|YP_003902322.1| - 0.0055 17.0 0.1 0.07 13.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|307596005|ref|YP_003902322.1| - 0.0069 16.4 0.0 0.13 12.3 0.0 2.4 1 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain SMC_N PF02463.19 gi|307596005|ref|YP_003902322.1| - 0.0074 15.7 0.0 0.96 8.8 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|307596005|ref|YP_003902322.1| - 0.0089 16.6 0.0 0.013 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|307596005|ref|YP_003902322.1| - 0.011 15.3 0.1 0.038 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|307596005|ref|YP_003902322.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|307596005|ref|YP_003902322.1| - 0.017 14.7 0.1 0.03 14.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|307596005|ref|YP_003902322.1| - 0.027 14.6 0.0 0.7 10.0 0.1 2.7 2 2 1 3 3 3 0 AAA domain Arm-DNA-bind_3 PF13356.6 gi|307596005|ref|YP_003902322.1| - 0.036 14.4 0.1 0.083 13.3 0.1 1.6 1 0 0 1 1 1 0 Arm DNA-binding domain SH3_12 PF18129.1 gi|307596005|ref|YP_003902322.1| - 0.044 13.9 0.2 3.7 7.7 0.1 2.8 2 0 0 2 2 2 0 Xrn1 SH3-like domain AAA_24 PF13479.6 gi|307596005|ref|YP_003902322.1| - 0.066 12.9 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|307596005|ref|YP_003902322.1| - 0.095 12.7 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|307596005|ref|YP_003902322.1| - 0.095 12.6 0.1 0.27 11.2 0.0 1.8 2 0 0 2 2 1 0 NTPase AAA_27 PF13514.6 gi|307596005|ref|YP_003902322.1| - 0.14 11.7 0.0 0.31 10.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|307596005|ref|YP_003902322.1| - 0.18 11.1 0.3 0.8 8.9 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin DLIC PF05783.11 gi|307596005|ref|YP_003902322.1| - 0.18 10.6 0.0 0.26 10.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC2_membrane PF01061.24 gi|307596006|ref|YP_003902323.1| - 8.5e-14 51.5 27.7 8.5e-14 51.5 27.7 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|307596006|ref|YP_003902323.1| - 2.8e-08 33.3 27.7 2.8e-08 33.3 27.7 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein CbiZ PF01955.18 gi|307596007|ref|YP_003902324.1| - 9.8e-61 205.2 0.4 1.1e-60 205.0 0.4 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase CobN-Mg_chel PF02514.16 gi|307596009|ref|YP_003902326.1| - 0 1053.0 0.0 0 1052.7 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase AAA_lid_2 PF17863.1 gi|307596010|ref|YP_003902327.1| - 4.2e-18 65.0 0.5 4.2e-18 65.0 0.5 1.7 2 0 0 2 2 2 1 AAA lid domain Mg_chelatase PF01078.21 gi|307596010|ref|YP_003902327.1| - 3.6e-13 49.4 0.6 8.3e-07 28.6 0.0 4.0 4 0 0 4 4 4 2 Magnesium chelatase, subunit ChlI VWA_2 PF13519.6 gi|307596010|ref|YP_003902327.1| - 1.3e-12 48.3 0.0 5.4e-12 46.3 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|307596010|ref|YP_003902327.1| - 5.4e-10 39.4 0.3 0.0001 22.3 0.0 2.6 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|307596010|ref|YP_003902327.1| - 3.2e-05 23.1 0.0 0.015 14.4 0.0 3.3 2 1 0 2 2 2 1 MCM P-loop domain VWA PF00092.28 gi|307596010|ref|YP_003902327.1| - 5.7e-05 23.4 0.0 0.0001 22.6 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_16 PF13191.6 gi|307596010|ref|YP_003902327.1| - 7.3e-05 23.2 0.1 0.0004 20.8 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|307596010|ref|YP_003902327.1| - 0.0046 16.7 0.0 2.6 7.7 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_22 PF13401.6 gi|307596010|ref|YP_003902327.1| - 0.0078 16.5 0.0 0.034 14.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|307596010|ref|YP_003902327.1| - 0.0098 15.9 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|307596010|ref|YP_003902327.1| - 0.014 15.8 0.0 0.11 12.9 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) VWA_CoxE PF05762.14 gi|307596010|ref|YP_003902327.1| - 0.019 14.4 0.2 0.11 11.9 0.2 2.2 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein NACHT PF05729.12 gi|307596010|ref|YP_003902327.1| - 0.022 14.7 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|307596010|ref|YP_003902327.1| - 0.038 13.5 0.0 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|307596010|ref|YP_003902327.1| - 0.13 12.6 0.0 4 7.8 0.0 3.0 3 1 0 3 3 3 0 AAA domain AAA_3 PF07726.11 gi|307596010|ref|YP_003902327.1| - 0.16 11.9 0.0 21 5.0 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|307596010|ref|YP_003902327.1| - 0.19 10.8 0.0 0.68 9.1 0.0 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|307596011|ref|YP_003902328.1| - 1.3e-27 97.0 0.0 1.7e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307596011|ref|YP_003902328.1| - 3.6e-07 30.3 0.0 1.7e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307596011|ref|YP_003902328.1| - 3.1e-06 26.8 0.4 0.00028 20.4 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|307596011|ref|YP_003902328.1| - 7.3e-05 23.4 0.0 0.00012 22.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307596011|ref|YP_003902328.1| - 0.0011 19.4 0.0 0.0046 17.3 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|307596011|ref|YP_003902328.1| - 0.0012 18.8 0.0 0.0032 17.4 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|307596011|ref|YP_003902328.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|307596011|ref|YP_003902328.1| - 0.0017 18.8 0.0 0.0037 17.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|307596011|ref|YP_003902328.1| - 0.018 14.7 0.0 0.042 13.6 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|307596011|ref|YP_003902328.1| - 0.028 14.0 0.1 0.36 10.4 0.0 2.3 2 1 1 3 3 3 0 AAA domain SbcCD_C PF13558.6 gi|307596011|ref|YP_003902328.1| - 0.03 14.6 0.0 0.74 10.1 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|307596011|ref|YP_003902328.1| - 0.039 14.1 0.0 0.07 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|307596011|ref|YP_003902328.1| - 0.041 14.0 0.1 0.1 12.7 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|307596011|ref|YP_003902328.1| - 0.044 13.4 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|307596011|ref|YP_003902328.1| - 0.045 14.0 0.3 0.16 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|307596011|ref|YP_003902328.1| - 0.12 12.1 0.2 0.7 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|307596011|ref|YP_003902328.1| - 0.12 12.1 0.3 0.68 9.6 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein TsaE PF02367.17 gi|307596011|ref|YP_003902328.1| - 0.14 12.2 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE FecCD PF01032.18 gi|307596012|ref|YP_003902329.1| - 7.3e-79 265.0 36.5 8.8e-79 264.7 36.5 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|307596013|ref|YP_003902330.1| - 1.3e-15 57.6 0.0 3.8e-15 56.1 0.0 1.7 2 0 0 2 2 2 1 Periplasmic binding protein TP_methylase PF00590.20 gi|307596015|ref|YP_003902332.1| - 6.6e-51 173.3 4.3 8.1e-51 173.0 4.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exog_C PF18026.1 gi|307596015|ref|YP_003902332.1| - 0.029 14.4 0.0 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 Endo/exonuclease (EXOG) C-terminal domain SecD_SecF PF02355.16 gi|307596015|ref|YP_003902332.1| - 0.059 12.8 0.5 0.21 11.0 0.5 1.9 1 1 0 1 1 1 0 Protein export membrane protein CMD PF02627.20 gi|307596015|ref|YP_003902332.1| - 0.16 12.0 0.8 2.5 8.2 0.5 2.6 2 1 0 2 2 2 0 Carboxymuconolactone decarboxylase family TP_methylase PF00590.20 gi|307596016|ref|YP_003902333.1| - 6.7e-35 121.0 0.0 7.5e-35 120.8 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.6 gi|307596017|ref|YP_003902334.1| - 4.8e-08 32.9 0.0 9.5e-08 32.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307596017|ref|YP_003902334.1| - 1.8e-07 31.8 0.0 3.4e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|307596017|ref|YP_003902334.1| - 1.9e-07 30.8 0.0 2.6e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|307596017|ref|YP_003902334.1| - 1.9e-07 31.1 0.4 2.8e-07 30.5 0.4 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|307596017|ref|YP_003902334.1| - 2.6e-07 30.3 0.1 3.6e-07 29.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|307596017|ref|YP_003902334.1| - 6.8e-07 29.0 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|307596017|ref|YP_003902334.1| - 9.5e-07 28.9 0.0 1.3e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|307596017|ref|YP_003902334.1| - 6.3e-06 27.2 0.1 9.4e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|307596017|ref|YP_003902334.1| - 1.6e-05 24.2 0.0 2.3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Cons_hypoth95 PF03602.15 gi|307596017|ref|YP_003902334.1| - 2.4e-05 24.0 0.0 3.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DOT1 PF08123.13 gi|307596017|ref|YP_003902334.1| - 5.9e-05 22.7 0.0 8.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Met_10 PF02475.16 gi|307596017|ref|YP_003902334.1| - 0.00014 21.7 0.0 0.00018 21.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein GCD14 PF08704.10 gi|307596017|ref|YP_003902334.1| - 0.00019 21.2 0.0 0.00028 20.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltr_RsmB-F PF01189.17 gi|307596017|ref|YP_003902334.1| - 0.00022 20.9 0.0 0.00032 20.4 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F UPF0020 PF01170.18 gi|307596017|ref|YP_003902334.1| - 0.00022 21.0 0.0 0.0012 18.6 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.20 gi|307596017|ref|YP_003902334.1| - 0.00036 19.7 0.0 0.00048 19.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|307596017|ref|YP_003902334.1| - 0.0015 18.4 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|307596017|ref|YP_003902334.1| - 0.0018 18.9 0.0 0.0034 18.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|307596017|ref|YP_003902334.1| - 0.0041 16.4 0.0 0.0079 15.5 0.0 1.6 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|307596017|ref|YP_003902334.1| - 0.013 14.8 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_16 PF10294.9 gi|307596017|ref|YP_003902334.1| - 0.018 14.8 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_12 PF08242.12 gi|307596017|ref|YP_003902334.1| - 0.056 14.2 0.0 0.085 13.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|307596017|ref|YP_003902334.1| - 0.064 13.2 0.0 0.084 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.15 gi|307596017|ref|YP_003902334.1| - 0.12 11.7 0.1 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G CbiD PF01888.17 gi|307596018|ref|YP_003902335.1| - 3.9e-69 232.8 6.3 3.9e-69 232.8 6.3 1.7 2 0 0 2 2 2 1 CbiD TP_methylase PF00590.20 gi|307596019|ref|YP_003902336.1| - 7.1e-37 127.4 0.1 8.5e-37 127.2 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.15 gi|307596020|ref|YP_003902337.1| - 7.5e-45 153.0 0.8 9.7e-45 152.6 0.8 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiX PF01903.17 gi|307596020|ref|YP_003902337.1| - 4e-13 49.6 0.0 2.1e-12 47.3 0.0 2.1 2 0 0 2 2 2 1 CbiX TMEM234 PF10639.9 gi|307596020|ref|YP_003902337.1| - 0.06 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Putative transmembrane family 234 NTP_transferase PF00483.23 gi|307596020|ref|YP_003902337.1| - 0.1 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase TP_methylase PF00590.20 gi|307596021|ref|YP_003902338.1| - 7.7e-33 114.2 0.0 9.4e-33 113.9 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|307596022|ref|YP_003902339.1| - 9.4e-28 96.0 0.6 2.3e-27 94.8 0.6 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|307596022|ref|YP_003902339.1| - 6e-19 68.7 0.9 1.1e-17 64.7 0.2 2.3 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus ClpS PF02617.17 gi|307596025|ref|YP_003902342.1| - 0.012 15.4 0.0 0.028 14.2 0.0 1.7 1 0 0 1 1 1 0 ATP-dependent Clp protease adaptor protein ClpS MFS_1 PF07690.16 gi|307596026|ref|YP_003902343.1| - 3.8e-07 29.4 15.1 4.5e-07 29.1 15.1 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|307596026|ref|YP_003902343.1| - 0.001 18.0 4.2 0.001 18.0 4.2 1.2 1 0 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|307596026|ref|YP_003902343.1| - 0.0011 17.9 9.6 0.011 14.6 9.1 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter DUF2530 PF10745.9 gi|307596026|ref|YP_003902343.1| - 0.18 12.0 2.3 0.42 10.9 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) adh_short_C2 PF13561.6 gi|307596027|ref|YP_003902344.1| - 3.1e-64 216.7 0.1 3.8e-64 216.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|307596027|ref|YP_003902344.1| - 2.7e-44 151.0 0.2 3.2e-44 150.7 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|307596027|ref|YP_003902344.1| - 5.1e-17 62.4 0.1 7.4e-17 61.8 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|307596027|ref|YP_003902344.1| - 5.4e-05 22.8 0.1 0.00017 21.2 0.0 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|307596027|ref|YP_003902344.1| - 0.023 14.1 0.1 0.11 11.8 0.1 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.13 gi|307596027|ref|YP_003902344.1| - 0.029 13.9 0.1 0.053 13.1 0.1 1.4 1 0 0 1 1 1 0 NmrA-like family DUF3104 PF11302.8 gi|307596027|ref|YP_003902344.1| - 0.033 13.9 0.0 2.1 8.1 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3104) Polysacc_synt_2 PF02719.15 gi|307596027|ref|YP_003902344.1| - 0.038 13.1 0.1 0.066 12.3 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein LDcluster4 PF18306.1 gi|307596027|ref|YP_003902344.1| - 0.08 12.5 0.3 0.42 10.2 0.0 2.0 2 0 0 2 2 2 0 SLOG cluster4 family NTP_transf_5 PF14907.6 gi|307596028|ref|YP_003902345.1| - 0.002 17.8 0.1 0.88 9.1 0.0 2.6 2 1 0 2 2 2 2 Uncharacterised nucleotidyltransferase DUF2007 PF09413.10 gi|307596028|ref|YP_003902345.1| - 0.096 12.9 1.5 0.17 12.1 0.1 2.1 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein PEP_mutase PF13714.6 gi|307596029|ref|YP_003902346.1| - 6.3e-60 202.6 0.2 7.5e-60 202.4 0.2 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|307596029|ref|YP_003902346.1| - 8.1e-14 51.0 0.1 1.4e-13 50.2 0.1 1.4 1 0 0 1 1 1 1 Isocitrate lyase family Pantoate_transf PF02548.15 gi|307596029|ref|YP_003902346.1| - 0.035 13.5 0.0 0.26 10.7 0.0 2.1 1 1 1 2 2 2 0 Ketopantoate hydroxymethyltransferase 3HCDH_N PF02737.18 gi|307596030|ref|YP_003902347.1| - 7.4e-67 224.7 0.1 1.1e-66 224.2 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|307596030|ref|YP_003902347.1| - 4.3e-65 219.5 0.0 6.5e-65 218.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|307596030|ref|YP_003902347.1| - 2.8e-50 168.9 0.0 3.4e-26 91.7 0.0 2.7 3 0 0 3 3 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|307596030|ref|YP_003902347.1| - 1.9e-45 155.8 0.0 3.3e-41 141.9 0.1 2.3 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|307596030|ref|YP_003902347.1| - 5.2e-06 26.5 0.0 1.5e-05 25.0 0.0 1.8 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|307596030|ref|YP_003902347.1| - 9.7e-06 25.8 0.0 2.1e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|307596030|ref|YP_003902347.1| - 0.0011 19.5 0.0 0.0034 17.9 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|307596030|ref|YP_003902347.1| - 0.0056 16.3 0.1 0.024 14.2 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|307596030|ref|YP_003902347.1| - 0.0076 16.8 0.3 0.025 15.1 0.3 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|307596030|ref|YP_003902347.1| - 0.014 14.7 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|307596030|ref|YP_003902347.1| - 0.041 13.2 0.2 0.11 11.8 0.1 1.7 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|307596030|ref|YP_003902347.1| - 0.066 13.7 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.21 gi|307596030|ref|YP_003902347.1| - 0.07 12.5 0.2 0.13 11.6 0.2 1.4 1 0 0 1 1 1 0 ThiF family AlaDh_PNT_C PF01262.21 gi|307596030|ref|YP_003902347.1| - 0.081 12.2 0.1 0.14 11.4 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peptidase_S49 PF01343.18 gi|307596030|ref|YP_003902347.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S49 SDH_sah PF01972.16 gi|307596030|ref|YP_003902347.1| - 0.13 11.2 0.3 0.63 9.0 0.1 2.1 2 1 0 2 2 2 0 Serine dehydrogenase proteinase BPD_transp_1 PF00528.22 gi|307596031|ref|YP_003902348.1| - 1.2e-10 41.4 18.2 1.2e-10 41.4 18.2 2.6 1 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|307596032|ref|YP_003902349.1| - 1.5e-20 73.9 0.0 2.1e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein EpuA PF11772.8 gi|307596032|ref|YP_003902349.1| - 0.53 10.0 2.8 1.2 8.8 2.8 1.6 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta TYW3 PF02676.14 gi|307596033|ref|YP_003902350.1| - 2.7e-34 118.4 0.0 4.1e-34 117.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 ABC_tran PF00005.27 gi|307596034|ref|YP_003902351.1| - 7e-29 101.1 0.0 1e-28 100.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307596034|ref|YP_003902351.1| - 6.8e-07 29.4 0.0 0.039 13.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|307596034|ref|YP_003902351.1| - 0.0023 18.3 0.0 0.0035 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307596034|ref|YP_003902351.1| - 0.0026 18.0 0.2 0.023 15.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|307596034|ref|YP_003902351.1| - 0.0032 18.0 0.1 0.0066 17.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|307596034|ref|YP_003902351.1| - 0.004 17.6 0.3 0.065 13.6 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|307596034|ref|YP_003902351.1| - 0.021 14.5 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|307596034|ref|YP_003902351.1| - 0.026 14.0 0.1 0.56 9.6 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain PhoH PF02562.16 gi|307596034|ref|YP_003902351.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.6 gi|307596034|ref|YP_003902351.1| - 0.13 12.6 0.0 0.33 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|307596034|ref|YP_003902351.1| - 0.15 12.1 0.1 0.83 9.7 0.1 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain ResIII PF04851.15 gi|307596034|ref|YP_003902351.1| - 0.18 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit BPD_transp_1 PF00528.22 gi|307596035|ref|YP_003902352.1| - 1.9e-24 86.4 45.8 4.2e-14 52.7 15.0 3.4 3 0 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component Ribosomal_L14 PF00238.19 gi|307596037|ref|YP_003902354.1| - 1.4e-32 112.3 0.1 1.7e-32 112.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.12 gi|307596037|ref|YP_003902354.1| - 0.005 17.1 0.1 0.013 15.7 0.0 1.7 2 0 0 2 2 2 1 PAS fold HGTP_anticodon PF03129.20 gi|307596038|ref|YP_003902355.1| - 2.6e-21 75.6 0.2 5.2e-21 74.6 0.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|307596038|ref|YP_003902355.1| - 6e-07 29.6 0.0 1.9e-06 28.0 0.0 1.8 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-C2HC_2 PF13913.6 gi|307596038|ref|YP_003902355.1| - 0.054 13.4 4.5 0.075 13.0 0.1 2.7 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Rad50_zn_hook PF04423.14 gi|307596038|ref|YP_003902355.1| - 0.061 13.2 1.7 1 9.2 0.0 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.10 gi|307596038|ref|YP_003902355.1| - 0.46 10.7 1.3 42 4.4 0.1 2.8 3 0 0 3 3 3 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|307596038|ref|YP_003902355.1| - 0.96 10.0 2.4 7.8 7.2 0.1 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type Prim_Zn_Ribbon PF08273.12 gi|307596038|ref|YP_003902355.1| - 2.6 8.4 3.9 0.87 9.9 0.7 1.8 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Arginase PF00491.21 gi|307596039|ref|YP_003902356.1| - 8.4e-55 186.2 0.0 9.6e-55 186.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family POR PF01558.18 gi|307596041|ref|YP_003902358.1| - 4.8e-35 121.2 0.0 5.6e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|307596042|ref|YP_003902359.1| - 1.3e-14 53.3 16.2 3.8e-08 32.8 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307596042|ref|YP_003902359.1| - 2.6e-11 43.5 7.3 3.7e-11 43.0 7.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307596042|ref|YP_003902359.1| - 7.7e-10 38.3 12.1 3.7e-05 23.5 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307596042|ref|YP_003902359.1| - 4.7e-09 36.2 20.8 2.8e-07 30.6 10.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307596042|ref|YP_003902359.1| - 2.9e-08 34.5 9.8 0.0013 19.6 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|307596042|ref|YP_003902359.1| - 3.3e-08 33.3 16.7 0.00061 19.7 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307596042|ref|YP_003902359.1| - 4.1e-08 33.7 8.8 8.3e-08 32.7 8.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307596042|ref|YP_003902359.1| - 6.2e-07 29.5 9.0 5.3e-06 26.5 9.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307596042|ref|YP_003902359.1| - 6.3e-06 26.5 6.4 1e-05 25.8 6.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307596042|ref|YP_003902359.1| - 1.8e-05 25.4 12.0 0.013 16.2 0.4 2.9 2 1 1 3 3 3 3 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|307596042|ref|YP_003902359.1| - 0.00052 20.5 15.2 0.0094 16.5 3.7 2.5 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|307596042|ref|YP_003902359.1| - 0.0019 18.7 11.4 0.043 14.4 12.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307596042|ref|YP_003902359.1| - 0.0047 17.3 11.3 0.046 14.2 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|307596042|ref|YP_003902359.1| - 0.0079 17.0 8.9 0.02 15.7 0.8 2.1 1 1 2 3 3 3 1 4Fe-4S dicluster domain POR_N PF01855.19 gi|307596043|ref|YP_003902360.1| - 1.3e-73 247.6 1.5 1.7e-73 247.1 1.5 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|307596043|ref|YP_003902360.1| - 4.5e-26 91.1 0.1 8.3e-26 90.3 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|307596043|ref|YP_003902360.1| - 0.00019 21.3 0.0 0.00041 20.2 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|307596044|ref|YP_003902361.1| - 1.6e-24 86.4 0.1 4e-24 85.1 0.1 1.7 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LTD PF00932.19 gi|307596046|ref|YP_003902363.1| - 0.00054 20.3 0.0 0.00073 19.9 0.0 1.3 1 1 0 1 1 1 1 Lamin Tail Domain FlgD_ig PF13860.6 gi|307596046|ref|YP_003902363.1| - 0.02 14.8 0.0 0.034 14.0 0.0 1.4 1 1 0 1 1 1 0 FlgD Ig-like domain MF_alpha PF04648.12 gi|307596046|ref|YP_003902363.1| - 0.34 11.3 3.1 0.35 11.2 0.0 2.6 3 0 0 3 3 3 0 Yeast mating factor alpha hormone DUF996 PF06195.13 gi|307596047|ref|YP_003902364.1| - 0.0078 16.5 4.2 0.0078 16.5 4.2 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF996) UBA_2 PF08587.11 gi|307596047|ref|YP_003902364.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Ubiquitin associated domain (UBA) ESSS PF10183.9 gi|307596047|ref|YP_003902364.1| - 0.11 12.7 0.1 0.2 11.9 0.1 1.3 1 0 0 1 1 1 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) CAAD PF14159.6 gi|307596047|ref|YP_003902364.1| - 1.3 9.0 9.5 0.092 12.6 4.0 2.0 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Phage_holin_3_6 PF07332.11 gi|307596047|ref|YP_003902364.1| - 5.5 7.1 7.8 1.8 8.6 0.2 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III NMN_transporter PF04973.12 gi|307596047|ref|YP_003902364.1| - 7.8 6.4 17.7 1.1 9.2 5.4 2.1 1 1 0 2 2 2 0 Nicotinamide mononucleotide transporter DUF58 PF01882.18 gi|307596048|ref|YP_003902365.1| - 2.8e-24 85.2 0.0 4.9e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 BatD PF13584.6 gi|307596048|ref|YP_003902365.1| - 0.0082 15.0 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 1 Oxygen tolerance AAA_3 PF07726.11 gi|307596049|ref|YP_003902366.1| - 1e-63 213.0 0.0 1.7e-63 212.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|307596049|ref|YP_003902366.1| - 6.4e-15 54.8 0.0 1.2e-14 53.9 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|307596049|ref|YP_003902366.1| - 7.6e-12 45.4 0.0 1.5e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|307596049|ref|YP_003902366.1| - 0.00016 21.4 0.0 0.0017 18.0 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|307596049|ref|YP_003902366.1| - 0.00025 20.5 0.1 0.25 10.7 0.1 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|307596049|ref|YP_003902366.1| - 0.00076 19.9 0.0 0.0043 17.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|307596049|ref|YP_003902366.1| - 0.0054 16.5 0.0 0.25 11.1 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|307596049|ref|YP_003902366.1| - 0.0065 16.6 0.0 0.54 10.3 0.0 3.0 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) MCM PF00493.23 gi|307596049|ref|YP_003902366.1| - 0.044 12.9 0.0 0.11 11.5 0.0 1.7 1 1 0 1 1 1 0 MCM P-loop domain WHIM1 PF15612.6 gi|307596050|ref|YP_003902367.1| - 0.041 13.4 0.2 0.5 10.0 0.0 2.5 2 0 0 2 2 2 0 WSTF, HB1, Itc1p, MBD9 motif 1 DUF4129 PF13559.6 gi|307596051|ref|YP_003902368.1| - 0.0034 17.6 0.0 0.0052 17.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) FtsX PF02687.21 gi|307596051|ref|YP_003902368.1| - 0.13 12.7 3.8 4.4 7.9 0.2 2.3 2 0 0 2 2 2 0 FtsX-like permease family Corona_NS3b PF03053.14 gi|307596051|ref|YP_003902368.1| - 0.13 12.0 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 ORF3b coronavirus protein HN PF00423.19 gi|307596051|ref|YP_003902368.1| - 0.63 8.8 3.6 0.87 8.3 3.6 1.1 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase DUF4834 PF16118.5 gi|307596051|ref|YP_003902368.1| - 1.3 10.1 4.6 1.8 9.5 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4834) DUF973 PF06157.11 gi|307596052|ref|YP_003902369.1| - 0.13 11.3 36.2 0.29 10.1 36.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF973) Lactamase_B PF00753.27 gi|307596053|ref|YP_003902370.1| - 5.2e-10 39.6 0.2 7.9e-10 39.1 0.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|307596053|ref|YP_003902370.1| - 1.5e-05 24.6 0.0 2.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.28 gi|307596054|ref|YP_003902371.1| - 1.4e-85 287.4 0.0 1.7e-85 287.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|307596054|ref|YP_003902371.1| - 1.6e-21 77.0 0.0 3.4e-21 76.0 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Exo_endo_phos PF03372.23 gi|307596055|ref|YP_003902372.1| - 5.9e-14 52.1 0.0 1.3e-13 51.0 0.0 1.5 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|307596055|ref|YP_003902372.1| - 6.1e-06 26.1 0.0 1.1e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Sulf_transp PF04143.14 gi|307596057|ref|YP_003902374.1| - 9.9e-28 97.6 17.2 9.9e-28 97.6 17.2 1.9 2 0 0 2 2 2 1 Sulphur transport Ribosomal_S6e PF01092.19 gi|307596058|ref|YP_003902375.1| - 4.9e-32 110.5 0.0 6.2e-32 110.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e Cren7 PF11520.8 gi|307596059|ref|YP_003902376.1| - 2.5e-17 62.5 3.7 3e-17 62.3 3.7 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 AceK PF06315.11 gi|307596059|ref|YP_003902376.1| - 0.038 12.5 0.0 0.038 12.5 0.0 1.0 1 0 0 1 1 1 0 Isocitrate dehydrogenase kinase/phosphatase (AceK) UDG PF03167.19 gi|307596060|ref|YP_003902377.1| - 1.8e-47 161.2 0.0 2.3e-47 160.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Glyco_trans_2_3 PF13632.6 gi|307596061|ref|YP_003902378.1| - 1.7e-18 67.2 2.8 3.5e-18 66.2 2.8 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|307596061|ref|YP_003902378.1| - 4.9e-12 46.0 0.0 7e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|307596061|ref|YP_003902378.1| - 1.3e-11 44.8 0.0 2.4e-11 44.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|307596061|ref|YP_003902378.1| - 1.9e-07 30.8 0.0 2.7e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|307596061|ref|YP_003902378.1| - 0.015 15.8 0.0 0.033 14.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Phage_holin_2_2 PF10746.9 gi|307596061|ref|YP_003902378.1| - 7.5 6.3 7.2 9.9 5.9 0.5 2.6 2 0 0 2 2 2 0 Phage holin T7 family, holin superfamily II Pribosyltran PF00156.27 gi|307596062|ref|YP_003902379.1| - 2.4e-11 43.4 0.1 3.5e-11 42.9 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|307596062|ref|YP_003902379.1| - 0.00014 21.4 0.0 0.00024 20.6 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_31 PF13560.6 gi|307596062|ref|YP_003902379.1| - 0.005 17.2 0.0 0.46 10.9 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain PRTase_2 PF15609.6 gi|307596062|ref|YP_003902379.1| - 0.03 13.8 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_3 PF01381.22 gi|307596062|ref|YP_003902379.1| - 0.057 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix ssDBP_DBD PF18361.1 gi|307596063|ref|YP_003902380.1| - 2.5e-49 166.9 1.1 4e-49 166.3 1.1 1.3 1 0 0 1 1 1 1 Single stranded DNA-binding protein ss DNA binding domain bZIP_1 PF00170.21 gi|307596063|ref|YP_003902380.1| - 4.4e-05 23.5 9.3 0.00011 22.2 9.3 1.7 1 1 0 1 1 1 1 bZIP transcription factor Cep57_CLD_2 PF14197.6 gi|307596063|ref|YP_003902380.1| - 5.2e-05 23.3 8.2 0.00011 22.2 8.2 1.5 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 HOOK PF05622.12 gi|307596063|ref|YP_003902380.1| - 8.7e-05 20.9 2.4 0.00012 20.4 2.4 1.1 1 0 0 1 1 1 1 HOOK protein BLOC1_2 PF10046.9 gi|307596063|ref|YP_003902380.1| - 8.8e-05 22.7 0.2 0.00016 21.9 0.2 1.4 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 EMP24_GP25L PF01105.24 gi|307596063|ref|YP_003902380.1| - 0.00016 21.7 0.3 0.00021 21.3 0.3 1.2 1 0 0 1 1 1 1 emp24/gp25L/p24 family/GOLD YabA PF06156.13 gi|307596063|ref|YP_003902380.1| - 0.0002 22.0 4.1 0.00047 20.8 4.1 1.5 1 0 0 1 1 1 1 Initiation control protein YabA FlaC_arch PF05377.11 gi|307596063|ref|YP_003902380.1| - 0.00025 21.4 3.4 0.00025 21.4 3.4 2.0 3 0 0 3 3 1 1 Flagella accessory protein C (FlaC) ZapB PF06005.12 gi|307596063|ref|YP_003902380.1| - 0.00051 20.4 9.4 0.0011 19.3 9.4 1.5 1 0 0 1 1 1 1 Cell division protein ZapB NRBF2 PF08961.10 gi|307596063|ref|YP_003902380.1| - 0.00058 19.5 2.1 0.00081 19.1 2.1 1.2 1 0 0 1 1 1 1 Nuclear receptor-binding factor 2, autophagy regulator KASH_CCD PF14662.6 gi|307596063|ref|YP_003902380.1| - 0.00074 19.4 4.7 0.0017 18.2 4.7 1.6 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH DUF3450 PF11932.8 gi|307596063|ref|YP_003902380.1| - 0.0013 18.1 0.7 0.0021 17.4 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) CALCOCO1 PF07888.11 gi|307596063|ref|YP_003902380.1| - 0.0016 17.4 2.4 0.0024 16.8 2.4 1.3 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like HALZ PF02183.18 gi|307596063|ref|YP_003902380.1| - 0.0017 18.5 9.7 0.059 13.6 3.4 2.5 1 1 1 2 2 2 2 Homeobox associated leucine zipper JIP_LZII PF16471.5 gi|307596063|ref|YP_003902380.1| - 0.0024 18.0 7.8 0.03 14.5 1.7 2.4 1 1 1 2 2 2 1 JNK-interacting protein leucine zipper II bZIP_2 PF07716.15 gi|307596063|ref|YP_003902380.1| - 0.0028 17.7 9.6 0.0095 16.0 8.0 2.3 1 1 1 2 2 2 1 Basic region leucine zipper Leu_zip PF15294.6 gi|307596063|ref|YP_003902380.1| - 0.0061 16.1 2.3 0.0092 15.5 2.3 1.2 1 0 0 1 1 1 1 Leucine zipper DUF812 PF05667.11 gi|307596063|ref|YP_003902380.1| - 0.0087 15.0 0.2 0.0087 15.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Taxilin PF09728.9 gi|307596063|ref|YP_003902380.1| - 0.01 15.0 2.5 0.02 14.1 2.5 1.4 1 0 0 1 1 1 0 Myosin-like coiled-coil protein TraF_2 PF13729.6 gi|307596063|ref|YP_003902380.1| - 0.011 15.2 0.1 0.018 14.4 0.1 1.3 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein PI3K_P85_iSH2 PF16454.5 gi|307596063|ref|YP_003902380.1| - 0.011 15.3 0.5 0.02 14.5 0.5 1.4 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2205 PF10224.9 gi|307596063|ref|YP_003902380.1| - 0.013 15.5 4.1 0.029 14.3 4.1 1.5 1 0 0 1 1 1 0 Short coiled-coil protein UPF0242 PF06785.11 gi|307596063|ref|YP_003902380.1| - 0.014 15.5 0.3 0.022 14.9 0.3 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus CENP-F_leu_zip PF10473.9 gi|307596063|ref|YP_003902380.1| - 0.015 15.3 5.3 0.041 13.9 3.7 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DivIC PF04977.15 gi|307596063|ref|YP_003902380.1| - 0.015 15.0 9.8 0.081 12.7 5.3 2.5 1 1 1 2 2 2 0 Septum formation initiator CENP-F_N PF10481.9 gi|307596063|ref|YP_003902380.1| - 0.018 14.7 0.7 0.12 11.9 0.0 2.0 1 1 1 2 2 2 0 Cenp-F N-terminal domain TolA_bind_tri PF16331.5 gi|307596063|ref|YP_003902380.1| - 0.018 15.1 3.2 0.042 13.9 3.2 1.6 1 0 0 1 1 1 0 TolA binding protein trimerisation Shugoshin_N PF07558.11 gi|307596063|ref|YP_003902380.1| - 0.019 14.8 4.5 0.052 13.4 4.3 1.9 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region MctB PF11382.8 gi|307596063|ref|YP_003902380.1| - 0.022 14.5 0.3 0.034 13.9 0.3 1.3 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB Nup54 PF13874.6 gi|307596063|ref|YP_003902380.1| - 0.023 14.8 1.1 0.034 14.3 1.1 1.3 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 TSC22 PF01166.18 gi|307596063|ref|YP_003902380.1| - 0.023 15.0 9.3 0.28 11.5 9.3 2.4 1 1 0 1 1 1 0 TSC-22/dip/bun family CtIP_N PF10482.9 gi|307596063|ref|YP_003902380.1| - 0.025 14.6 3.3 0.042 13.9 3.3 1.3 1 0 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain Occludin_ELL PF07303.13 gi|307596063|ref|YP_003902380.1| - 0.026 15.3 0.3 0.053 14.3 0.3 1.5 1 0 0 1 1 1 0 Occludin homology domain DUF4061 PF13270.6 gi|307596063|ref|YP_003902380.1| - 0.027 14.8 0.6 0.065 13.6 0.4 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4061) CLZ PF16526.5 gi|307596063|ref|YP_003902380.1| - 0.029 14.7 5.0 0.075 13.4 5.0 1.7 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Mod_r PF07200.13 gi|307596063|ref|YP_003902380.1| - 0.029 14.5 2.1 0.055 13.6 2.1 1.5 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Atg14 PF10186.9 gi|307596063|ref|YP_003902380.1| - 0.032 13.3 1.3 0.041 13.0 1.3 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 HAUS-augmin3 PF14932.6 gi|307596063|ref|YP_003902380.1| - 0.032 13.8 3.0 0.047 13.3 3.0 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF1664 PF07889.12 gi|307596063|ref|YP_003902380.1| - 0.043 13.9 0.3 0.075 13.1 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|307596063|ref|YP_003902380.1| - 0.046 13.9 4.6 0.17 12.1 4.6 2.0 1 0 0 1 1 1 0 Haemolysin XhlA Cnn_1N PF07989.11 gi|307596063|ref|YP_003902380.1| - 0.047 13.9 6.0 0.12 12.5 6.0 1.7 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 APG6_N PF17675.1 gi|307596063|ref|YP_003902380.1| - 0.051 14.1 4.6 0.093 13.3 4.6 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF4482 PF14818.6 gi|307596063|ref|YP_003902380.1| - 0.052 14.4 6.8 0.13 13.1 6.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4482) DUF641 PF04859.12 gi|307596063|ref|YP_003902380.1| - 0.061 13.7 1.4 0.1 12.9 1.4 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Snapin_Pallidin PF14712.6 gi|307596063|ref|YP_003902380.1| - 0.061 13.7 1.1 0.11 12.9 1.1 1.5 1 0 0 1 1 1 0 Snapin/Pallidin DUF4140 PF13600.6 gi|307596063|ref|YP_003902380.1| - 0.061 13.8 1.6 0.12 12.9 1.6 1.5 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF948 PF06103.11 gi|307596063|ref|YP_003902380.1| - 0.062 13.6 0.3 0.18 12.1 0.2 1.8 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF948) DUF2461 PF09365.10 gi|307596063|ref|YP_003902380.1| - 0.1 12.6 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) TMF_DNA_bd PF12329.8 gi|307596063|ref|YP_003902380.1| - 0.1 12.6 8.7 0.2 11.7 8.7 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding GrpE PF01025.19 gi|307596063|ref|YP_003902380.1| - 0.11 12.2 5.0 0.21 11.2 5.0 1.4 1 0 0 1 1 1 0 GrpE Spc24 PF08286.11 gi|307596063|ref|YP_003902380.1| - 0.14 12.4 4.5 0.47 10.7 4.5 1.9 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Spc7 PF08317.11 gi|307596063|ref|YP_003902380.1| - 0.15 11.0 3.7 0.25 10.2 3.7 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein CENP-H PF05837.12 gi|307596063|ref|YP_003902380.1| - 0.16 12.4 4.4 0.3 11.5 4.4 1.4 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Ax_dynein_light PF10211.9 gi|307596063|ref|YP_003902380.1| - 0.16 11.9 4.6 0.29 11.1 4.6 1.4 1 0 0 1 1 1 0 Axonemal dynein light chain SHE3 PF17078.5 gi|307596063|ref|YP_003902380.1| - 0.16 11.7 4.6 0.26 11.0 4.6 1.3 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 Sec34 PF04136.15 gi|307596063|ref|YP_003902380.1| - 0.17 11.8 0.9 0.21 11.4 0.2 1.5 2 0 0 2 2 1 0 Sec34-like family Seryl_tRNA_N PF02403.22 gi|307596063|ref|YP_003902380.1| - 0.18 12.1 4.6 0.16 12.2 2.6 1.9 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain Prefoldin_2 PF01920.20 gi|307596063|ref|YP_003902380.1| - 0.29 11.1 5.2 0.75 9.8 5.2 1.7 1 0 0 1 1 1 0 Prefoldin subunit PikAIV_N PF18605.1 gi|307596063|ref|YP_003902380.1| - 0.3 10.7 11.2 2.2 7.9 2.8 2.5 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain NYD-SP28_assoc PF14775.6 gi|307596063|ref|YP_003902380.1| - 0.47 10.6 6.1 0.85 9.8 3.0 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain FmiP_Thoc5 PF09766.9 gi|307596063|ref|YP_003902380.1| - 0.5 9.6 6.0 0.71 9.1 6.0 1.1 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 SlyX PF04102.12 gi|307596063|ref|YP_003902380.1| - 0.6 10.8 4.0 2.7 8.7 1.3 2.3 1 1 1 2 2 2 0 SlyX DUF2381 PF09544.10 gi|307596063|ref|YP_003902380.1| - 0.6 9.6 4.6 0.97 8.9 4.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2381) CASP_C PF08172.12 gi|307596063|ref|YP_003902380.1| - 1.1 8.6 8.3 1.6 8.0 8.3 1.2 1 0 0 1 1 1 0 CASP C terminal GED PF02212.18 gi|307596063|ref|YP_003902380.1| - 1.1 9.4 4.8 71 3.6 5.5 2.7 2 1 0 2 2 2 0 Dynamin GTPase effector domain Rho_Binding PF08912.11 gi|307596063|ref|YP_003902380.1| - 1.6 9.6 9.8 3.9 8.4 0.6 2.6 2 1 1 3 3 2 0 Rho Binding Uso1_p115_C PF04871.13 gi|307596063|ref|YP_003902380.1| - 5.9 7.3 11.1 0.079 13.3 3.7 1.6 2 0 0 2 2 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF1192 PF06698.11 gi|307596063|ref|YP_003902380.1| - 9.2 6.4 10.0 0.28 11.3 1.7 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF1192) PBP PF01161.20 gi|307596064|ref|YP_003902381.1| - 3.7e-26 92.0 0.0 4.7e-26 91.7 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein tRNA_synthFbeta PF17759.1 gi|307596065|ref|YP_003902382.1| - 3e-38 131.4 0.0 6.3e-38 130.4 0.0 1.6 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|307596065|ref|YP_003902382.1| - 1.4e-16 60.5 0.0 4.3e-12 46.1 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|307596065|ref|YP_003902382.1| - 1.6e-12 47.4 0.0 3.1e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|307596065|ref|YP_003902382.1| - 0.0045 17.2 0.0 0.23 11.7 0.0 2.8 2 1 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain tRNA_deacylase PF04414.12 gi|307596066|ref|YP_003902383.1| - 5.6e-52 176.3 0.0 6.6e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF429 PF04250.13 gi|307596067|ref|YP_003902384.1| - 3.9e-06 26.8 0.0 4.7e-05 23.3 0.0 2.5 1 1 0 1 1 1 1 Protein of unknown function (DUF429) zf-TFIIB PF13453.6 gi|307596069|ref|YP_003902386.1| - 0.0024 17.2 1.3 0.0034 16.7 1.3 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-RRPl_C4 PF17026.5 gi|307596069|ref|YP_003902386.1| - 0.014 15.5 0.6 0.017 15.3 0.6 1.2 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type YacG PF03884.14 gi|307596069|ref|YP_003902386.1| - 0.019 14.7 0.2 6 6.7 0.0 2.4 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG zf-Di19 PF05605.12 gi|307596069|ref|YP_003902386.1| - 0.056 13.7 0.3 9.3 6.6 0.0 2.4 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.6 gi|307596069|ref|YP_003902386.1| - 0.06 13.1 1.3 0.25 11.1 1.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|307596069|ref|YP_003902386.1| - 0.067 13.2 4.0 0.17 11.9 4.0 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|307596069|ref|YP_003902386.1| - 0.069 12.7 0.5 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|307596069|ref|YP_003902386.1| - 0.083 12.9 0.3 0.12 12.4 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Thioredoxin_3 PF13192.6 gi|307596069|ref|YP_003902386.1| - 0.14 12.2 0.4 2.8 8.0 0.0 2.2 1 1 1 2 2 2 0 Thioredoxin domain zf-Mss51 PF13824.6 gi|307596069|ref|YP_003902386.1| - 0.21 11.7 1.3 1.2 9.3 1.9 1.9 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.6 gi|307596069|ref|YP_003902386.1| - 0.32 11.4 2.3 2.4 8.6 2.2 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Thioredoxin_4 PF13462.6 gi|307596069|ref|YP_003902386.1| - 0.35 11.0 0.1 0.35 11.0 0.1 1.8 1 1 1 2 2 2 0 Thioredoxin zf-C4_Topoisom PF01396.19 gi|307596069|ref|YP_003902386.1| - 0.4 10.5 4.5 5.3 6.9 4.7 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1595 PF12760.7 gi|307596069|ref|YP_003902386.1| - 0.45 10.5 3.4 4.1 7.5 3.4 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|307596069|ref|YP_003902386.1| - 0.9 9.6 3.4 4.7 7.3 3.4 2.0 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|307596069|ref|YP_003902386.1| - 1.7 8.1 5.8 3.2 7.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|307596071|ref|YP_003902388.1| - 3e-16 58.9 0.7 4.7e-16 58.3 0.7 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|307596071|ref|YP_003902388.1| - 1.4e-13 50.6 0.7 2.2e-13 50.0 0.7 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated HypA PF01155.19 gi|307596071|ref|YP_003902388.1| - 0.0051 16.8 0.2 0.0085 16.1 0.2 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|307596071|ref|YP_003902388.1| - 0.016 15.3 0.1 0.026 14.5 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|307596071|ref|YP_003902388.1| - 0.019 14.4 2.6 2.3 7.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|307596071|ref|YP_003902388.1| - 0.03 14.0 4.7 0.057 13.2 4.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|307596071|ref|YP_003902388.1| - 0.13 11.7 1.6 3.6 7.2 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|307596071|ref|YP_003902388.1| - 0.14 12.3 5.3 0.49 10.6 5.3 1.9 1 1 0 1 1 1 0 Zinc ribbon domain CpXC PF14353.6 gi|307596071|ref|YP_003902388.1| - 0.29 11.2 1.6 4.5 7.3 1.0 2.5 2 1 1 3 3 3 0 CpXC protein zf-C2H2_3 PF13878.6 gi|307596071|ref|YP_003902388.1| - 1.5 8.7 3.7 0.46 10.3 0.7 1.8 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Thiolase_N PF00108.23 gi|307596072|ref|YP_003902389.1| - 9.6e-21 74.3 1.0 4.5e-20 72.1 1.0 1.9 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|307596072|ref|YP_003902389.1| - 9e-13 47.9 3.1 7.8e-11 41.7 0.0 3.5 4 0 0 4 4 4 2 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|307596072|ref|YP_003902389.1| - 2.6e-07 30.5 6.5 4.5e-05 23.1 2.6 2.7 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|307596072|ref|YP_003902389.1| - 1.4e-05 24.9 1.9 0.00041 20.2 0.8 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|307596072|ref|YP_003902389.1| - 0.00028 20.9 0.2 0.29 11.1 0.0 3.4 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain Presenilin PF01080.17 gi|307596074|ref|YP_003902391.1| - 6.8e-13 48.1 35.7 3.4e-07 29.4 7.8 2.1 1 1 1 2 2 2 2 Presenilin SPP PF06550.11 gi|307596074|ref|YP_003902391.1| - 0.02 14.4 30.0 0.042 13.3 19.6 2.1 2 0 0 2 2 2 0 Signal-peptide peptidase, presenilin aspartyl protease Gemini_mov PF01708.16 gi|307596074|ref|YP_003902391.1| - 0.22 11.3 6.4 2.9 7.7 0.3 2.8 2 1 0 2 2 2 0 Geminivirus putative movement protein tRNA-synt_2d PF01409.20 gi|307596075|ref|YP_003902392.1| - 1.7e-81 273.4 0.0 2.3e-81 272.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|307596075|ref|YP_003902392.1| - 2.4e-05 23.9 0.0 5.9e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|307596075|ref|YP_003902392.1| - 3.2e-05 23.2 0.7 0.22 10.6 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) DUF4364 PF14277.6 gi|307596075|ref|YP_003902392.1| - 0.00054 19.8 0.8 0.58 9.9 0.1 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4364) AAA_assoc_C PF09821.9 gi|307596075|ref|YP_003902392.1| - 0.0022 18.5 0.3 0.024 15.1 0.0 2.4 2 1 0 2 2 2 1 C-terminal AAA-associated domain HTH_27 PF13463.6 gi|307596075|ref|YP_003902392.1| - 0.0026 18.2 0.1 0.011 16.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|307596075|ref|YP_003902392.1| - 0.0097 15.9 4.1 1.3 9.0 0.2 3.8 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|307596075|ref|YP_003902392.1| - 0.011 15.4 0.0 3.3 7.4 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|307596075|ref|YP_003902392.1| - 0.011 15.7 0.6 0.25 11.3 0.1 3.2 3 0 0 3 3 3 0 MarR family Rrf2 PF02082.20 gi|307596075|ref|YP_003902392.1| - 0.014 15.7 0.3 1.4 9.3 0.1 2.6 2 0 0 2 2 2 0 Transcriptional regulator HTH_36 PF13730.6 gi|307596075|ref|YP_003902392.1| - 0.06 13.3 0.0 0.3 11.1 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain CtsR_C PF17727.1 gi|307596075|ref|YP_003902392.1| - 0.12 12.5 1.3 0.28 11.3 1.3 1.7 1 0 0 1 1 1 0 CtsR C-terminal dimerization domain DUF4331 PF14224.6 gi|307596075|ref|YP_003902392.1| - 0.16 11.2 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4331) LexA_DNA_bind PF01726.16 gi|307596075|ref|YP_003902392.1| - 0.23 11.2 1.0 48 3.8 0.1 3.4 3 1 0 3 3 3 0 LexA DNA binding domain ETF PF01012.21 gi|307596076|ref|YP_003902393.1| - 2.8e-44 151.2 3.2 3.7e-44 150.8 3.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain TPR_10 PF13374.6 gi|307596076|ref|YP_003902393.1| - 2.8 7.9 5.8 7.4 6.6 0.2 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat ETF_alpha PF00766.19 gi|307596077|ref|YP_003902394.1| - 2.5e-31 107.5 0.0 8.4e-31 105.8 0.0 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|307596077|ref|YP_003902394.1| - 1.7e-08 34.6 0.9 3e-08 33.8 0.9 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain CCG PF02754.16 gi|307596078|ref|YP_003902395.1| - 3.7e-27 94.4 0.2 1.1e-12 48.0 0.2 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|307596078|ref|YP_003902395.1| - 2.2e-11 44.0 5.6 5.6e-11 42.7 5.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307596078|ref|YP_003902395.1| - 9.2e-10 38.5 6.9 9.2e-10 38.5 6.9 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307596078|ref|YP_003902395.1| - 4.5e-09 36.3 6.5 4.5e-09 36.3 6.5 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307596078|ref|YP_003902395.1| - 1.7e-07 32.0 6.6 1.7e-07 32.0 6.6 2.1 3 0 0 3 3 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|307596078|ref|YP_003902395.1| - 6.1e-06 26.7 10.0 3.8e-05 24.2 10.2 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596078|ref|YP_003902395.1| - 1.1e-05 25.8 9.9 1.6e-05 25.3 7.9 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307596078|ref|YP_003902395.1| - 0.00027 20.8 13.9 0.077 13.1 3.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|307596078|ref|YP_003902395.1| - 0.00099 19.4 9.8 0.022 15.2 0.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307596078|ref|YP_003902395.1| - 0.0054 16.8 5.9 0.25 11.5 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|307596078|ref|YP_003902395.1| - 0.033 14.4 3.1 1.6 8.9 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307596078|ref|YP_003902395.1| - 0.044 14.5 5.4 2.6 8.8 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|307596078|ref|YP_003902395.1| - 0.053 14.4 7.1 2.7 8.9 0.0 3.1 4 0 0 4 4 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307596078|ref|YP_003902395.1| - 0.083 12.7 17.4 0.12 12.2 4.9 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|307596078|ref|YP_003902395.1| - 0.11 12.2 2.7 2.6 7.8 0.0 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|307596078|ref|YP_003902395.1| - 0.16 13.0 20.1 0.37 11.8 5.2 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|307596078|ref|YP_003902395.1| - 0.2 11.8 20.9 0.92 9.7 5.0 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|307596078|ref|YP_003902395.1| - 1.8 9.1 8.8 7.6 7.2 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I RIO1 PF01163.22 gi|307596079|ref|YP_003902396.1| - 2.3e-10 40.4 0.0 2.8e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|307596079|ref|YP_003902396.1| - 1.1e-09 38.0 0.0 1.8e-09 37.4 0.0 1.3 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|307596079|ref|YP_003902396.1| - 1.4e-08 35.0 0.1 0.0049 16.8 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|307596079|ref|YP_003902396.1| - 2.9e-07 30.1 0.0 1.3e-06 27.9 0.0 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|307596079|ref|YP_003902396.1| - 0.0012 18.2 0.0 0.0014 18.0 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|307596079|ref|YP_003902396.1| - 0.014 15.0 0.1 0.025 14.2 0.1 1.4 1 1 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Ribosomal_S13_N PF08069.12 gi|307596080|ref|YP_003902397.1| - 6.8e-25 86.9 0.2 1.1e-24 86.2 0.2 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|307596080|ref|YP_003902397.1| - 2.1e-16 59.9 0.1 2.8e-16 59.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF5340 PF17275.2 gi|307596080|ref|YP_003902397.1| - 0.055 13.6 0.0 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5340) MFS_5 PF05631.14 gi|307596080|ref|YP_003902397.1| - 0.13 11.2 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Sugar-tranasporters, 12 TM UPF0179 PF03684.13 gi|307596081|ref|YP_003902398.1| - 4.3e-31 107.7 0.2 5.1e-31 107.4 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Coagulin PF02035.15 gi|307596081|ref|YP_003902398.1| - 0.054 13.4 0.0 0.066 13.1 0.0 1.1 1 0 0 1 1 1 0 Coagulin Peptidase_M42 PF05343.14 gi|307596082|ref|YP_003902399.1| - 1.1e-87 293.7 0.0 1.3e-87 293.5 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|307596082|ref|YP_003902399.1| - 2.2e-06 27.5 0.0 3.6e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|307596082|ref|YP_003902399.1| - 2.5e-06 27.4 0.0 0.0003 20.5 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M28 Gp_dh_C PF02800.20 gi|307596083|ref|YP_003902400.1| - 1.9e-17 63.3 0.0 2.7e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|307596083|ref|YP_003902400.1| - 3.1e-10 40.2 0.3 6e-10 39.3 0.3 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|307596083|ref|YP_003902400.1| - 9.2e-05 22.7 1.1 0.00096 19.5 0.6 2.8 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|307596083|ref|YP_003902400.1| - 0.0004 21.2 0.0 0.00083 20.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|307596083|ref|YP_003902400.1| - 0.0059 16.0 2.4 0.027 13.8 0.4 2.6 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|307596083|ref|YP_003902400.1| - 0.055 14.1 0.8 0.23 12.1 0.8 2.2 1 1 0 1 1 1 0 PglD N-terminal domain F420_oxidored PF03807.17 gi|307596083|ref|YP_003902400.1| - 0.1 13.2 0.5 0.83 10.3 0.5 2.4 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|307596083|ref|YP_003902400.1| - 0.12 13.0 0.0 0.43 11.2 0.0 1.9 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain PGK PF00162.19 gi|307596084|ref|YP_003902401.1| - 3.9e-101 338.8 0.1 5.1e-101 338.4 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase KH_1 PF00013.29 gi|307596085|ref|YP_003902402.1| - 4.8e-06 26.3 4.4 0.016 15.0 0.5 2.4 2 0 0 2 2 2 2 KH domain DUF1786 PF08735.10 gi|307596085|ref|YP_003902402.1| - 0.098 11.9 0.2 0.31 10.3 0.2 1.8 1 1 0 1 1 1 0 Putative pyruvate format-lyase activating enzyme (DUF1786) KH_8 PF17903.1 gi|307596085|ref|YP_003902402.1| - 0.11 12.6 0.1 0.25 11.5 0.1 1.6 1 0 0 1 1 1 0 Krr1 KH1 domain Ribosomal_S3Ae PF01015.18 gi|307596086|ref|YP_003902403.1| - 8.4e-63 211.6 0.3 9.9e-63 211.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Pcc1 PF09341.10 gi|307596087|ref|YP_003902404.1| - 0.0038 17.3 0.0 0.0047 17.0 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Radical_SAM PF04055.21 gi|307596089|ref|YP_003902406.1| - 1.3e-22 81.0 1.2 3.5e-22 79.5 0.0 2.3 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|307596089|ref|YP_003902406.1| - 2.6e-06 27.6 0.1 1.2e-05 25.4 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|307596089|ref|YP_003902406.1| - 6.7e-06 26.4 0.0 1.5e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SAVED PF18145.1 gi|307596089|ref|YP_003902406.1| - 0.0096 15.7 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 1 SMODS-associated and fused to various effectors sensor domain ComA PF02679.15 gi|307596089|ref|YP_003902406.1| - 0.028 13.9 0.0 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) zf-Di19 PF05605.12 gi|307596089|ref|YP_003902406.1| - 2.6 8.4 5.2 14 6.0 0.3 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|307596089|ref|YP_003902406.1| - 8.6 6.0 6.8 30 4.2 0.0 3.9 4 0 0 4 4 4 0 TFIIB zinc-binding TrmB PF01978.19 gi|307596090|ref|YP_003902407.1| - 4e-21 74.7 0.3 1.1e-20 73.2 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|307596090|ref|YP_003902407.1| - 0.00012 21.9 0.0 0.00054 19.7 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|307596090|ref|YP_003902407.1| - 0.007 16.8 0.0 0.063 13.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|307596090|ref|YP_003902407.1| - 0.02 15.2 0.0 0.055 13.8 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_24 PF13412.6 gi|307596090|ref|YP_003902407.1| - 0.023 14.3 0.0 0.16 11.6 0.0 2.3 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding AcetylCoA_hydro PF02550.15 gi|307596090|ref|YP_003902407.1| - 0.03 14.3 0.3 0.078 13.0 0.0 1.8 2 0 0 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain HTH_9 PF08221.11 gi|307596090|ref|YP_003902407.1| - 0.049 13.7 0.0 0.22 11.6 0.0 2.1 2 1 1 3 3 3 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.7 gi|307596090|ref|YP_003902407.1| - 0.083 12.8 0.0 0.3 11.0 0.0 2.0 1 1 1 2 2 2 0 MarR family Phage_rep_org_N PF09681.10 gi|307596090|ref|YP_003902407.1| - 0.099 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) MarR PF01047.22 gi|307596090|ref|YP_003902407.1| - 0.1 12.6 0.0 0.68 9.9 0.0 2.1 2 0 0 2 2 2 0 MarR family tRNA-synt_2b PF00587.25 gi|307596091|ref|YP_003902408.1| - 7.3e-36 123.8 0.1 2e-35 122.3 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|307596091|ref|YP_003902408.1| - 3.8e-22 78.6 8.6 6.7e-22 77.8 8.6 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain APG6_N PF17675.1 gi|307596091|ref|YP_003902408.1| - 0.012 16.1 4.4 0.025 15.1 4.4 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region CREPT PF16566.5 gi|307596091|ref|YP_003902408.1| - 0.033 14.3 1.1 0.16 12.2 0.7 2.0 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour DUF948 PF06103.11 gi|307596091|ref|YP_003902408.1| - 0.064 13.5 0.2 0.14 12.4 0.2 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DivIC PF04977.15 gi|307596091|ref|YP_003902408.1| - 0.085 12.6 5.4 1.5 8.6 0.1 2.5 1 1 1 2 2 2 0 Septum formation initiator HCMV_UL139 PF12507.8 gi|307596091|ref|YP_003902408.1| - 0.18 12.2 1.0 0.41 11.0 1.0 1.5 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein PhoU_div PF01865.16 gi|307596091|ref|YP_003902408.1| - 0.24 10.7 4.6 0.76 9.1 1.8 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF47 MREG PF15812.5 gi|307596091|ref|YP_003902408.1| - 4.6 7.5 8.5 3.4 8.0 2.9 2.5 3 0 0 3 3 3 0 Melanoregulin TPP_enzyme_C PF02775.21 gi|307596092|ref|YP_003902409.1| - 3.7e-23 82.0 0.2 5.5e-23 81.4 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|307596092|ref|YP_003902409.1| - 0.00092 18.5 0.0 0.0012 18.1 0.0 1.1 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|307596092|ref|YP_003902409.1| - 0.014 14.3 0.2 0.021 13.8 0.2 1.1 1 0 0 1 1 1 0 Dehydrogenase E1 component Amidohydro_2 PF04909.14 gi|307596092|ref|YP_003902409.1| - 0.095 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase POR_N PF01855.19 gi|307596093|ref|YP_003902410.1| - 1.2e-63 215.0 0.1 1.5e-63 214.7 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|307596093|ref|YP_003902410.1| - 7.1e-25 87.3 0.1 4.5e-24 84.7 0.0 2.4 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|307596093|ref|YP_003902410.1| - 0.0016 18.3 0.0 0.0036 17.2 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|307596093|ref|YP_003902410.1| - 0.0045 16.6 0.7 0.0064 16.1 0.7 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain T2SS-T3SS_pil_N PF13629.6 gi|307596093|ref|YP_003902410.1| - 0.12 12.2 0.3 0.24 11.2 0.3 1.5 1 0 0 1 1 1 0 Pilus formation protein N terminal region Fer4 PF00037.27 gi|307596094|ref|YP_003902411.1| - 2.5e-16 58.7 17.3 2.4e-08 33.4 6.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307596094|ref|YP_003902411.1| - 8.9e-13 48.6 20.6 1.5e-09 38.3 9.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307596094|ref|YP_003902411.1| - 1.3e-11 44.1 13.9 4.4e-06 26.5 4.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307596094|ref|YP_003902411.1| - 1.1e-10 41.4 8.6 1.4e-10 41.1 8.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307596094|ref|YP_003902411.1| - 4.3e-10 40.4 7.3 2.2e-05 25.3 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|307596094|ref|YP_003902411.1| - 1.4e-09 37.9 21.2 1.4e-06 28.3 11.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307596094|ref|YP_003902411.1| - 5.3e-08 32.5 12.4 0.00027 20.8 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307596094|ref|YP_003902411.1| - 7.3e-08 32.5 9.3 1.9e-07 31.1 9.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307596094|ref|YP_003902411.1| - 5.4e-07 30.0 3.4 0.0068 16.8 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596094|ref|YP_003902411.1| - 1.1e-06 29.0 3.2 0.015 15.9 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307596094|ref|YP_003902411.1| - 8.4e-05 23.2 10.1 0.15 12.8 0.3 2.8 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|307596094|ref|YP_003902411.1| - 0.00032 21.0 11.6 0.042 14.3 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|307596094|ref|YP_003902411.1| - 0.00087 19.8 10.1 0.026 15.1 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|307596094|ref|YP_003902411.1| - 0.008 17.0 10.3 0.03 15.2 1.3 2.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain MerT PF02411.15 gi|307596094|ref|YP_003902411.1| - 0.056 13.5 0.1 0.08 13.0 0.1 1.2 1 0 0 1 1 1 0 MerT mercuric transport protein Fer4_3 PF12798.7 gi|307596094|ref|YP_003902411.1| - 0.093 13.7 6.0 0.093 13.7 6.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|307596094|ref|YP_003902411.1| - 0.65 10.2 10.2 1.7 8.9 2.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF3343 PF11823.8 gi|307596094|ref|YP_003902411.1| - 1 8.9 4.4 8.9 5.9 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3343) POR PF01558.18 gi|307596095|ref|YP_003902412.1| - 3.6e-26 92.3 0.0 7.8e-26 91.2 0.0 1.5 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase CxxCxxCC PF03692.15 gi|307596096|ref|YP_003902413.1| - 8.4e-19 68.1 1.5 1.1e-18 67.6 1.5 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF1264 PF06884.11 gi|307596096|ref|YP_003902413.1| - 0.22 11.1 0.0 0.28 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1264) DUF3109 PF11307.8 gi|307596096|ref|YP_003902413.1| - 0.87 9.4 4.8 4.9 6.9 4.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3109) Thiamine_BP PF01910.17 gi|307596097|ref|YP_003902414.1| - 4.8e-27 93.7 0.3 5.3e-27 93.6 0.3 1.0 1 0 0 1 1 1 1 Thiamine-binding protein E1-E2_ATPase PF00122.20 gi|307596098|ref|YP_003902415.1| - 1.1e-47 161.8 0.2 1.1e-47 161.8 0.2 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|307596098|ref|YP_003902415.1| - 5.1e-37 128.2 1.4 9e-37 127.4 1.4 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|307596098|ref|YP_003902415.1| - 7.4e-19 68.0 0.1 2.1e-13 50.5 0.1 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|307596098|ref|YP_003902415.1| - 4.9e-05 23.2 1.3 9.2e-05 22.3 0.9 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|307596098|ref|YP_003902415.1| - 0.00015 22.2 0.1 0.00081 19.8 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Neurensin PF14927.6 gi|307596098|ref|YP_003902415.1| - 0.05 13.3 0.8 7 6.4 0.1 2.6 2 0 0 2 2 2 0 Neurensin HTH_22 PF13309.6 gi|307596098|ref|YP_003902415.1| - 0.14 12.3 0.0 30 4.8 0.0 2.5 2 0 0 2 2 2 0 HTH domain YHS PF04945.13 gi|307596099|ref|YP_003902416.1| - 9.5e-19 67.2 0.7 1.1e-18 67.1 0.7 1.1 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|307596099|ref|YP_003902416.1| - 0.0026 18.0 1.5 0.0043 17.4 1.5 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|307596099|ref|YP_003902416.1| - 0.0042 17.0 0.7 0.0072 16.2 0.5 1.5 1 1 1 2 2 2 1 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|307596099|ref|YP_003902416.1| - 0.029 13.9 0.0 0.036 13.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function Arc_trans_TRASH PF08394.10 gi|307596100|ref|YP_003902417.1| - 3.1e-13 49.8 7.1 5.7e-13 49.0 7.1 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.6 gi|307596100|ref|YP_003902417.1| - 6.8e-12 44.8 0.2 1.8e-11 43.4 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|307596100|ref|YP_003902417.1| - 1.3e-10 41.0 0.0 4.7e-10 39.2 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|307596100|ref|YP_003902417.1| - 1.8e-09 37.3 1.1 4.3e-09 36.0 1.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|307596100|ref|YP_003902417.1| - 4e-08 33.0 0.1 8.6e-08 32.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|307596100|ref|YP_003902417.1| - 4.3e-08 33.0 1.4 1.1e-07 31.7 0.2 2.2 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|307596100|ref|YP_003902417.1| - 1.1e-07 31.5 0.0 1.9e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|307596100|ref|YP_003902417.1| - 4.1e-07 29.6 0.1 9.2e-07 28.5 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_22 PF13309.6 gi|307596100|ref|YP_003902417.1| - 5.1e-06 26.5 0.7 9.5e-06 25.6 0.2 1.8 2 0 0 2 2 1 1 HTH domain HTH_36 PF13730.6 gi|307596100|ref|YP_003902417.1| - 6.4e-06 26.0 0.0 1.6e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|307596100|ref|YP_003902417.1| - 9.9e-06 25.4 0.0 2.3e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|307596100|ref|YP_003902417.1| - 1.5e-05 24.9 0.0 2.8e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|307596100|ref|YP_003902417.1| - 2.9e-05 23.6 0.1 5.5e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|307596100|ref|YP_003902417.1| - 3.6e-05 23.6 0.1 0.00011 22.1 0.1 1.8 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_17 PF12728.7 gi|307596100|ref|YP_003902417.1| - 4.9e-05 23.4 0.3 0.0004 20.5 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|307596100|ref|YP_003902417.1| - 6.8e-05 22.9 0.1 0.00017 21.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_5 PF01022.20 gi|307596100|ref|YP_003902417.1| - 9.5e-05 22.2 0.0 0.00021 21.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|307596100|ref|YP_003902417.1| - 0.00011 21.8 0.4 0.00024 20.8 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|307596100|ref|YP_003902417.1| - 0.00016 21.3 0.3 0.00059 19.5 0.1 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|307596100|ref|YP_003902417.1| - 0.00022 21.0 0.2 0.00056 19.7 0.1 1.7 2 0 0 2 2 1 1 HTH DNA binding domain HTH_28 PF13518.6 gi|307596100|ref|YP_003902417.1| - 0.00051 20.1 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.19 gi|307596100|ref|YP_003902417.1| - 0.00061 19.5 0.1 0.0012 18.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family TetR_N PF00440.23 gi|307596100|ref|YP_003902417.1| - 0.00065 19.5 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_20 PF12840.7 gi|307596100|ref|YP_003902417.1| - 0.00077 19.5 0.0 0.0017 18.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF977 PF06163.11 gi|307596100|ref|YP_003902417.1| - 0.00094 19.1 0.2 0.0017 18.3 0.2 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) Rrf2 PF02082.20 gi|307596100|ref|YP_003902417.1| - 0.001 19.3 0.0 0.002 18.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Cys_rich_CPXG PF14255.6 gi|307596100|ref|YP_003902417.1| - 0.0017 18.2 0.2 0.0039 17.1 0.2 1.7 1 0 0 1 1 1 1 Cysteine-rich CPXCG Sigma70_r4_2 PF08281.12 gi|307596100|ref|YP_003902417.1| - 0.0019 17.8 0.8 0.0038 16.9 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|307596100|ref|YP_003902417.1| - 0.0029 17.9 0.7 0.0055 17.0 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|307596100|ref|YP_003902417.1| - 0.0031 17.0 0.1 0.0073 15.8 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|307596100|ref|YP_003902417.1| - 0.0033 16.8 1.2 0.008 15.6 0.5 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 RPA_C PF08784.11 gi|307596100|ref|YP_003902417.1| - 0.0033 18.0 0.0 0.0052 17.4 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal Zn_ribbon_recom PF13408.6 gi|307596100|ref|YP_003902417.1| - 0.0066 16.9 4.0 0.011 16.2 4.0 1.3 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain HTH_27 PF13463.6 gi|307596100|ref|YP_003902417.1| - 0.0079 16.7 0.0 0.015 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_6 PF01418.17 gi|307596100|ref|YP_003902417.1| - 0.01 15.8 0.2 0.021 14.8 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain, rpiR family Penicillinase_R PF03965.16 gi|307596100|ref|YP_003902417.1| - 0.012 15.9 0.0 0.024 15.0 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_32 PF13565.6 gi|307596100|ref|YP_003902417.1| - 0.014 16.0 0.1 0.028 15.0 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_40 PF14493.6 gi|307596100|ref|YP_003902417.1| - 0.022 15.2 0.0 0.078 13.4 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|307596100|ref|YP_003902417.1| - 0.026 14.7 0.0 0.052 13.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_9 PF08221.11 gi|307596100|ref|YP_003902417.1| - 0.028 14.5 0.0 0.061 13.4 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_CodY PF08222.11 gi|307596100|ref|YP_003902417.1| - 0.028 14.0 0.2 0.066 12.8 0.2 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain FeoC PF09012.10 gi|307596100|ref|YP_003902417.1| - 0.039 14.0 0.0 0.22 11.6 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator Sigma70_ECF PF07638.11 gi|307596100|ref|YP_003902417.1| - 0.047 13.6 0.1 0.087 12.7 0.1 1.4 1 0 0 1 1 1 0 ECF sigma factor Mga PF05043.13 gi|307596100|ref|YP_003902417.1| - 0.049 14.2 0.0 0.086 13.4 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|307596100|ref|YP_003902417.1| - 0.062 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase SepF PF04472.12 gi|307596100|ref|YP_003902417.1| - 0.069 13.4 0.1 0.13 12.5 0.1 1.5 1 0 0 1 1 1 0 Cell division protein SepF Dimerisation2 PF16864.5 gi|307596100|ref|YP_003902417.1| - 0.089 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain TnsD PF15978.5 gi|307596100|ref|YP_003902417.1| - 0.11 11.5 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D LacI PF00356.21 gi|307596100|ref|YP_003902417.1| - 0.11 12.2 0.5 0.61 9.9 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_Mga PF08280.11 gi|307596100|ref|YP_003902417.1| - 0.12 12.5 0.1 0.42 10.7 0.0 1.9 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain Crp PF00325.20 gi|307596100|ref|YP_003902417.1| - 0.12 12.1 0.8 0.34 10.6 0.1 2.2 2 0 0 2 2 1 0 Bacterial regulatory proteins, crp family HTH_3 PF01381.22 gi|307596100|ref|YP_003902417.1| - 0.13 12.4 0.1 0.3 11.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix DUF3489 PF11994.8 gi|307596100|ref|YP_003902417.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) Glyco_hydro_57 PF03065.15 gi|307596102|ref|YP_003902419.1| - 1.9e-46 158.8 0.9 5.4e-44 150.7 0.9 2.3 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF3267 PF11667.8 gi|307596102|ref|YP_003902419.1| - 5.1 7.4 6.6 1.3 9.4 1.5 2.7 2 0 0 2 2 2 0 Putative zincin peptidase BPD_transp_1 PF00528.22 gi|307596103|ref|YP_003902420.1| - 7e-17 61.8 24.7 7e-17 61.8 24.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|307596104|ref|YP_003902421.1| - 6.7e-16 58.6 23.3 6.7e-16 58.6 23.3 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|307596104|ref|YP_003902421.1| - 0.039 14.1 1.2 0.13 12.4 1.2 1.8 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters SBP_bac_8 PF13416.6 gi|307596105|ref|YP_003902422.1| - 3.4e-21 76.3 5.2 3.4e-21 76.3 5.2 1.7 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|307596105|ref|YP_003902422.1| - 4.5e-15 56.4 1.3 8.8e-15 55.4 1.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein VSP PF03302.13 gi|307596105|ref|YP_003902422.1| - 0.0027 16.6 2.0 0.0042 16.0 2.0 1.2 1 0 0 1 1 1 1 Giardia variant-specific surface protein Podoplanin PF05808.11 gi|307596105|ref|YP_003902422.1| - 0.72 9.9 3.7 1.3 9.1 3.7 1.4 1 0 0 1 1 1 0 Podoplanin Alpha-amylase PF00128.24 gi|307596106|ref|YP_003902423.1| - 9.9e-48 163.4 0.9 1.4e-43 149.8 0.9 3.0 1 1 0 1 1 1 1 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 gi|307596106|ref|YP_003902423.1| - 2.6e-08 33.9 0.0 6e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase ThiS PF02597.20 gi|307596107|ref|YP_003902424.1| - 2.3e-14 53.8 0.0 2.7e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|307596107|ref|YP_003902424.1| - 1.1e-05 25.6 0.0 1.3e-05 25.5 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) tRNA-synt_1f PF01921.18 gi|307596108|ref|YP_003902425.1| - 1.5e-100 336.7 0.2 2.2e-100 336.1 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) zinc_ribbon_10 PF10058.9 gi|307596108|ref|YP_003902425.1| - 0.087 12.6 0.3 0.2 11.4 0.3 1.6 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-RING_7 PF02591.15 gi|307596108|ref|YP_003902425.1| - 0.27 11.5 1.0 1.6 9.0 0.1 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain TMEM169 PF15052.6 gi|307596109|ref|YP_003902426.1| - 1.1 9.3 7.1 0.092 12.9 2.2 1.7 2 0 0 2 2 2 0 TMEM169 protein family DHHC PF01529.20 gi|307596109|ref|YP_003902426.1| - 4.3 7.4 8.0 0.91 9.6 3.9 1.7 1 1 1 2 2 2 0 DHHC palmitoyltransferase DUF4231 PF14015.6 gi|307596109|ref|YP_003902426.1| - 7.3 7.1 8.6 0.31 11.5 2.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) Spc7 PF08317.11 gi|307596110|ref|YP_003902427.1| - 2e-10 40.1 92.2 0.00085 18.3 12.0 4.6 1 1 3 4 4 4 4 Spc7 kinetochore protein DUF3552 PF12072.8 gi|307596110|ref|YP_003902427.1| - 9.7e-06 25.1 106.5 0.058 12.8 26.3 6.5 1 1 6 7 7 7 4 Domain of unknown function (DUF3552) ATG16 PF08614.11 gi|307596110|ref|YP_003902427.1| - 0.00018 21.8 94.9 0.16 12.1 15.9 5.5 1 1 4 5 5 5 3 Autophagy protein 16 (ATG16) OmpH PF03938.14 gi|307596110|ref|YP_003902427.1| - 0.00023 21.5 74.8 0.13 12.6 5.9 5.9 1 1 3 4 4 3 3 Outer membrane protein (OmpH-like) DUF948 PF06103.11 gi|307596110|ref|YP_003902427.1| - 0.00025 21.2 40.7 0.019 15.2 3.3 7.1 3 2 4 7 7 7 3 Bacterial protein of unknown function (DUF948) MscS_porin PF12795.7 gi|307596110|ref|YP_003902427.1| - 0.00028 20.5 86.2 0.24 10.9 1.6 5.6 1 1 4 5 5 5 4 Mechanosensitive ion channel porin domain FPP PF05911.11 gi|307596110|ref|YP_003902427.1| - 0.0003 19.1 53.3 0.0003 19.1 53.3 2.6 1 1 1 2 2 2 1 Filament-like plant protein, long coiled-coil Laminin_II PF06009.12 gi|307596110|ref|YP_003902427.1| - 0.00032 20.7 6.7 0.00032 20.7 6.7 6.0 1 1 5 6 6 6 2 Laminin Domain II AAA_13 PF13166.6 gi|307596110|ref|YP_003902427.1| - 0.00066 18.5 70.9 0.003 16.3 16.2 3.7 1 1 3 4 4 4 4 AAA domain LXG PF04740.12 gi|307596110|ref|YP_003902427.1| - 0.0028 17.4 13.4 0.0028 17.4 13.4 5.4 2 1 2 4 4 3 1 LXG domain of WXG superfamily Baculo_PEP_C PF04513.12 gi|307596110|ref|YP_003902427.1| - 0.0042 17.1 57.2 7.1 6.7 0.4 6.5 1 1 3 4 4 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus HAUS-augmin3 PF14932.6 gi|307596110|ref|YP_003902427.1| - 0.0043 16.7 76.9 0.017 14.7 4.8 5.2 1 1 4 5 5 5 3 HAUS augmin-like complex subunit 3 YkyA PF10368.9 gi|307596110|ref|YP_003902427.1| - 0.0053 16.5 6.5 0.0053 16.5 6.5 5.3 1 1 6 7 7 6 2 Putative cell-wall binding lipoprotein Atg14 PF10186.9 gi|307596110|ref|YP_003902427.1| - 0.0053 15.9 78.9 0.084 12.0 15.2 4.3 1 1 3 4 4 4 2 Vacuolar sorting 38 and autophagy-related subunit 14 TACC_C PF05010.14 gi|307596110|ref|YP_003902427.1| - 0.0067 16.2 7.0 0.0067 16.2 7.0 4.9 1 1 3 5 5 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF4200 PF13863.6 gi|307596110|ref|YP_003902427.1| - 0.0097 16.3 95.1 0.4 11.1 2.1 7.0 2 1 4 6 6 6 2 Domain of unknown function (DUF4200) Jnk-SapK_ap_N PF09744.9 gi|307596110|ref|YP_003902427.1| - 0.011 15.9 2.1 0.011 15.9 2.1 5.9 1 1 5 6 6 4 0 JNK_SAPK-associated protein-1 FlgN PF05130.12 gi|307596110|ref|YP_003902427.1| - 0.023 15.2 5.1 0.023 15.2 5.1 5.8 1 1 4 5 5 4 0 FlgN protein Sec34 PF04136.15 gi|307596110|ref|YP_003902427.1| - 0.038 13.9 58.0 0.2 11.5 4.9 6.6 1 1 3 6 6 6 0 Sec34-like family FUSC PF04632.12 gi|307596110|ref|YP_003902427.1| - 0.11 11.0 30.6 0.39 9.2 2.7 3.5 1 1 2 3 3 3 0 Fusaric acid resistance protein family Syntaxin_2 PF14523.6 gi|307596110|ref|YP_003902427.1| - 0.12 12.8 62.1 0.18 12.2 9.6 6.1 3 2 2 5 5 5 0 Syntaxin-like protein NPV_P10 PF05531.12 gi|307596110|ref|YP_003902427.1| - 0.13 12.7 48.7 0.14 12.7 0.5 8.0 2 1 5 7 7 7 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|307596110|ref|YP_003902427.1| - 0.14 12.2 58.2 0.081 13.0 4.1 6.6 1 1 4 6 6 6 0 Protein of unknown function (DUF1664) Fez1 PF06818.15 gi|307596110|ref|YP_003902427.1| - 0.33 11.4 79.0 6.3 7.2 20.4 5.1 1 1 4 5 5 5 0 Fez1 Mce4_CUP1 PF11887.8 gi|307596110|ref|YP_003902427.1| - 0.35 10.3 17.2 0.16 11.4 2.2 4.1 2 2 1 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative UPF0242 PF06785.11 gi|307596110|ref|YP_003902427.1| - 0.45 10.6 89.1 0.15 12.2 23.7 5.4 1 1 5 6 6 6 0 Uncharacterised protein family (UPF0242) N-terminus DUF2203 PF09969.9 gi|307596110|ref|YP_003902427.1| - 0.45 11.3 56.6 1.3 9.8 4.5 6.7 1 1 5 6 6 5 0 Uncharacterized conserved protein (DUF2203) Exonuc_VII_L PF02601.15 gi|307596110|ref|YP_003902427.1| - 1.4 8.4 71.5 3.7 7.0 10.4 4.1 1 1 2 3 3 2 0 Exonuclease VII, large subunit MCPsignal PF00015.21 gi|307596110|ref|YP_003902427.1| - 2 8.2 30.5 0.12 12.1 6.7 5.0 2 1 4 6 6 6 0 Methyl-accepting chemotaxis protein (MCP) signalling domain IFT57 PF10498.9 gi|307596110|ref|YP_003902427.1| - 2.2 7.2 70.2 0.049 12.6 8.6 5.2 1 1 3 4 4 4 0 Intra-flagellar transport protein 57 DUF4201 PF13870.6 gi|307596110|ref|YP_003902427.1| - 3.2 7.5 90.4 0.3 10.8 20.2 5.9 1 1 2 5 5 5 0 Domain of unknown function (DUF4201) Fib_alpha PF08702.10 gi|307596110|ref|YP_003902427.1| - 7.5 6.7 67.0 0.039 14.1 10.1 5.5 1 1 5 6 6 6 0 Fibrinogen alpha/beta chain family Laminin_I PF06008.14 gi|307596110|ref|YP_003902427.1| - 9.9 5.8 84.9 0.37 10.4 8.2 5.1 1 1 3 4 4 3 0 Laminin Domain I HSBP1 PF06825.12 gi|307596111|ref|YP_003902428.1| - 3.2e-05 23.7 3.0 1 9.2 0.4 3.6 2 1 1 3 3 3 2 Heat shock factor binding protein 1 NPV_P10 PF05531.12 gi|307596111|ref|YP_003902428.1| - 8.6e-05 22.9 9.1 0.07 13.6 0.3 3.3 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|307596111|ref|YP_003902428.1| - 0.00011 22.2 6.4 0.062 13.3 0.1 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|307596111|ref|YP_003902428.1| - 0.00029 20.9 11.5 0.0011 19.1 3.9 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.11 gi|307596111|ref|YP_003902428.1| - 0.0003 19.8 8.4 0.001 18.0 8.2 1.7 1 1 0 1 1 1 1 Spc7 kinetochore protein Laminin_II PF06009.12 gi|307596111|ref|YP_003902428.1| - 0.00082 19.4 11.2 0.14 12.2 0.7 2.1 1 1 1 2 2 2 2 Laminin Domain II Uds1 PF15456.6 gi|307596111|ref|YP_003902428.1| - 0.0011 19.2 5.1 0.43 10.7 0.8 2.5 1 1 1 2 2 2 2 Up-regulated During Septation PspA_IM30 PF04012.12 gi|307596111|ref|YP_003902428.1| - 0.0017 18.0 3.4 0.0032 17.1 1.5 2.0 1 1 1 2 2 2 1 PspA/IM30 family DUF4407 PF14362.6 gi|307596111|ref|YP_003902428.1| - 0.002 17.6 0.4 0.0024 17.3 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Spectrin PF00435.21 gi|307596111|ref|YP_003902428.1| - 0.002 18.6 2.7 1.2 9.6 0.8 2.7 1 1 1 2 2 2 1 Spectrin repeat IFT57 PF10498.9 gi|307596111|ref|YP_003902428.1| - 0.0027 16.7 6.6 0.12 11.3 0.6 2.1 1 1 0 2 2 2 2 Intra-flagellar transport protein 57 COG2 PF06148.11 gi|307596111|ref|YP_003902428.1| - 0.0028 17.8 9.0 0.35 11.0 1.8 2.4 1 1 0 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 CENP-Q PF13094.6 gi|307596111|ref|YP_003902428.1| - 0.0034 17.6 8.7 0.11 12.7 0.3 3.0 2 1 1 3 3 3 1 CENP-Q, a CENPA-CAD centromere complex subunit TBK1_CCD1 PF18394.1 gi|307596111|ref|YP_003902428.1| - 0.0037 16.9 8.9 0.027 14.0 5.9 2.0 1 1 1 2 2 2 1 TANK-binding kinase 1 coiled-coil domain 1 FliJ PF02050.16 gi|307596111|ref|YP_003902428.1| - 0.005 17.1 1.7 0.062 13.5 0.1 2.4 1 1 1 2 2 2 1 Flagellar FliJ protein BLOC1_2 PF10046.9 gi|307596111|ref|YP_003902428.1| - 0.0055 17.0 9.5 0.11 12.8 0.3 3.3 1 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.9 gi|307596111|ref|YP_003902428.1| - 0.0073 16.5 7.4 0.031 14.5 0.4 3.1 3 0 0 3 3 3 1 Haemolysin XhlA APG17 PF04108.12 gi|307596111|ref|YP_003902428.1| - 0.0074 15.5 3.7 0.011 14.8 3.7 1.3 1 0 0 1 1 1 1 Autophagy protein Apg17 Fib_alpha PF08702.10 gi|307596111|ref|YP_003902428.1| - 0.01 16.0 1.4 0.01 16.0 1.4 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Matrilin_ccoil PF10393.9 gi|307596111|ref|YP_003902428.1| - 0.01 15.6 5.2 0.061 13.2 0.1 3.2 3 1 0 3 3 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Filament PF00038.21 gi|307596111|ref|YP_003902428.1| - 0.011 15.3 7.6 0.24 11.0 0.5 2.1 1 1 1 2 2 2 0 Intermediate filament protein DUF3450 PF11932.8 gi|307596111|ref|YP_003902428.1| - 0.011 15.0 7.5 0.11 11.7 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) STAT_alpha PF01017.20 gi|307596111|ref|YP_003902428.1| - 0.012 15.5 2.1 0.021 14.7 1.9 1.6 1 1 0 1 1 1 0 STAT protein, all-alpha domain AAA_13 PF13166.6 gi|307596111|ref|YP_003902428.1| - 0.014 14.1 4.0 0.063 11.9 4.0 1.7 1 1 0 1 1 1 0 AAA domain Seryl_tRNA_N PF02403.22 gi|307596111|ref|YP_003902428.1| - 0.015 15.5 5.1 0.44 10.8 0.4 2.4 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Occludin_ELL PF07303.13 gi|307596111|ref|YP_003902428.1| - 0.018 15.8 1.1 1.3 9.7 0.0 2.7 1 1 2 3 3 3 0 Occludin homology domain HSCB_C PF07743.13 gi|307596111|ref|YP_003902428.1| - 0.019 15.5 5.3 0.028 14.9 2.1 2.6 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain ADIP PF11559.8 gi|307596111|ref|YP_003902428.1| - 0.019 15.1 6.5 0.052 13.6 0.2 2.4 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding CLZ PF16526.5 gi|307596111|ref|YP_003902428.1| - 0.019 15.3 8.0 0.055 13.8 0.5 3.4 1 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Troponin PF00992.20 gi|307596111|ref|YP_003902428.1| - 0.02 15.2 3.0 0.043 14.1 0.3 2.1 2 0 0 2 2 2 0 Troponin DUF4988 PF16378.5 gi|307596111|ref|YP_003902428.1| - 0.021 14.5 3.8 0.11 12.2 0.1 2.4 2 1 1 3 3 2 0 Domain of unknown function DUF4795 PF16043.5 gi|307596111|ref|YP_003902428.1| - 0.025 14.2 6.5 1.1 8.8 6.5 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) MscS_porin PF12795.7 gi|307596111|ref|YP_003902428.1| - 0.025 14.1 11.2 0.17 11.4 5.3 2.6 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain MCPsignal PF00015.21 gi|307596111|ref|YP_003902428.1| - 0.025 14.4 3.6 0.57 10.0 0.9 2.4 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain SKA2 PF16740.5 gi|307596111|ref|YP_003902428.1| - 0.026 14.3 4.3 0.73 9.6 0.4 2.6 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 Tropomyosin PF00261.20 gi|307596111|ref|YP_003902428.1| - 0.028 13.8 5.4 0.1 12.0 0.2 2.2 1 1 0 2 2 2 0 Tropomyosin FlaC_arch PF05377.11 gi|307596111|ref|YP_003902428.1| - 0.03 14.7 12.7 0.094 13.1 1.0 3.9 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) TACC_C PF05010.14 gi|307596111|ref|YP_003902428.1| - 0.031 14.0 2.9 1.6 8.4 0.2 2.2 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TetR PF13972.6 gi|307596111|ref|YP_003902428.1| - 0.032 13.9 0.3 1.3 8.7 0.1 2.2 1 1 0 2 2 2 0 Bacterial transcriptional repressor Sec34 PF04136.15 gi|307596111|ref|YP_003902428.1| - 0.037 13.9 7.7 0.63 9.9 0.4 2.6 1 1 2 3 3 3 0 Sec34-like family DUF16 PF01519.16 gi|307596111|ref|YP_003902428.1| - 0.045 14.3 5.1 2.9 8.4 0.2 2.8 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF812 PF05667.11 gi|307596111|ref|YP_003902428.1| - 0.047 12.6 7.2 0.21 10.4 7.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF2730 PF10805.8 gi|307596111|ref|YP_003902428.1| - 0.052 13.6 6.0 0.068 13.3 0.4 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF2730) Med8 PF10232.9 gi|307596111|ref|YP_003902428.1| - 0.054 13.1 4.7 0.4 10.2 0.4 2.3 1 1 1 2 2 2 0 Mediator of RNA polymerase II transcription complex subunit 8 UPF0184 PF03670.13 gi|307596111|ref|YP_003902428.1| - 0.056 13.8 0.2 0.056 13.8 0.2 2.4 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0184) YPEB PF14620.6 gi|307596111|ref|YP_003902428.1| - 0.06 12.7 5.0 2.3 7.5 0.2 2.1 1 1 0 2 2 2 0 YpeB sporulation DUF2203 PF09969.9 gi|307596111|ref|YP_003902428.1| - 0.073 13.8 3.6 5.4 7.7 0.5 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) HMMR_N PF15905.5 gi|307596111|ref|YP_003902428.1| - 0.076 12.5 6.5 0.14 11.6 6.5 1.4 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Snapin_Pallidin PF14712.6 gi|307596111|ref|YP_003902428.1| - 0.076 13.4 9.8 2.5 8.6 3.1 3.0 1 1 2 3 3 3 0 Snapin/Pallidin Syntaxin PF00804.25 gi|307596111|ref|YP_003902428.1| - 0.08 12.6 4.5 0.27 10.9 1.2 2.2 2 0 0 2 2 2 0 Syntaxin DUF948 PF06103.11 gi|307596111|ref|YP_003902428.1| - 0.082 13.2 6.1 1.7 9.0 0.2 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DASH_Dam1 PF08653.10 gi|307596111|ref|YP_003902428.1| - 0.084 12.7 5.6 0.87 9.4 0.3 3.2 3 0 0 3 3 3 0 DASH complex subunit Dam1 ABC_tran_CTD PF16326.5 gi|307596111|ref|YP_003902428.1| - 0.089 13.0 2.8 3.1 8.1 0.0 3.2 1 1 0 2 2 2 0 ABC transporter C-terminal domain DUF4559 PF15112.6 gi|307596111|ref|YP_003902428.1| - 0.095 12.4 6.0 0.98 9.0 1.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) TMF_TATA_bd PF12325.8 gi|307596111|ref|YP_003902428.1| - 0.098 12.9 11.3 1.5 9.1 4.3 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding LRRFIP PF09738.9 gi|307596111|ref|YP_003902428.1| - 0.1 12.1 7.6 0.48 9.9 2.1 2.1 1 1 0 2 2 2 0 LRRFIP family FemAB PF02388.16 gi|307596111|ref|YP_003902428.1| - 0.1 11.4 1.2 0.4 9.5 0.2 1.9 1 1 0 2 2 2 0 FemAB family DASH_Hsk3 PF08227.11 gi|307596111|ref|YP_003902428.1| - 0.12 12.8 0.3 0.12 12.8 0.3 2.9 3 0 0 3 3 2 0 DASH complex subunit Hsk3 like Prefoldin_2 PF01920.20 gi|307596111|ref|YP_003902428.1| - 0.13 12.2 8.7 0.72 9.8 0.5 3.1 2 1 1 3 3 3 0 Prefoldin subunit Spc24 PF08286.11 gi|307596111|ref|YP_003902428.1| - 0.14 12.5 10.7 0.61 10.3 0.7 3.0 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 YgaB PF14182.6 gi|307596111|ref|YP_003902428.1| - 0.14 12.5 5.1 0.21 12.0 1.2 2.7 1 1 2 3 3 3 0 YgaB-like protein Syntaxin_2 PF14523.6 gi|307596111|ref|YP_003902428.1| - 0.15 12.4 8.8 57 4.2 8.8 2.4 1 1 0 1 1 1 0 Syntaxin-like protein LPP PF04728.13 gi|307596111|ref|YP_003902428.1| - 0.15 12.4 0.4 0.15 12.4 0.4 3.3 3 0 0 3 3 3 0 Lipoprotein leucine-zipper TPR_MLP1_2 PF07926.12 gi|307596111|ref|YP_003902428.1| - 0.18 11.9 8.8 2 8.5 2.5 2.7 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein APG6_N PF17675.1 gi|307596111|ref|YP_003902428.1| - 0.18 12.3 3.9 3.2 8.3 0.0 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region CorA PF01544.18 gi|307596111|ref|YP_003902428.1| - 0.2 10.9 8.1 0.7 9.2 7.8 1.9 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein LXG PF04740.12 gi|307596111|ref|YP_003902428.1| - 0.22 11.2 4.2 0.28 10.9 0.6 2.4 1 1 2 3 3 3 0 LXG domain of WXG superfamily DivIC PF04977.15 gi|307596111|ref|YP_003902428.1| - 0.24 11.2 0.2 0.24 11.2 0.2 3.1 2 1 0 3 3 3 0 Septum formation initiator Sas10_Utp3 PF04000.15 gi|307596111|ref|YP_003902428.1| - 0.24 12.1 3.0 24 5.7 0.2 3.3 3 0 0 3 3 3 0 Sas10/Utp3/C1D family Tektin PF03148.14 gi|307596111|ref|YP_003902428.1| - 0.26 10.0 7.9 0.17 10.6 0.4 2.3 2 1 0 2 2 2 0 Tektin family SKA1 PF07160.12 gi|307596111|ref|YP_003902428.1| - 0.27 11.1 7.6 0.91 9.3 1.0 2.6 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 TRPM_tetra PF16519.5 gi|307596111|ref|YP_003902428.1| - 0.3 11.2 6.7 4.9 7.3 0.1 3.4 3 0 0 3 3 3 0 Tetramerisation domain of TRPM TBCC_N PF16752.5 gi|307596111|ref|YP_003902428.1| - 0.31 11.5 6.1 6.5 7.2 0.2 3.0 1 1 1 3 3 3 0 Tubulin-specific chaperone C N-terminal domain TMF_DNA_bd PF12329.8 gi|307596111|ref|YP_003902428.1| - 0.31 11.1 9.2 0.46 10.5 0.9 3.2 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding V_ATPase_I PF01496.19 gi|307596111|ref|YP_003902428.1| - 0.32 8.8 2.9 4.3 5.1 0.1 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family bZIP_1 PF00170.21 gi|307596111|ref|YP_003902428.1| - 0.35 11.0 7.2 1.7 8.8 0.7 3.3 3 1 0 3 3 2 0 bZIP transcription factor DHR10 PF18595.1 gi|307596111|ref|YP_003902428.1| - 0.44 10.6 9.2 0.94 9.6 0.3 2.8 1 1 0 2 2 2 0 Designed helical repeat protein 10 domain Exonuc_VII_L PF02601.15 gi|307596111|ref|YP_003902428.1| - 0.45 10.0 4.9 1.1 8.8 4.9 1.6 1 1 0 1 1 1 0 Exonuclease VII, large subunit MbeD_MobD PF04899.12 gi|307596111|ref|YP_003902428.1| - 0.48 10.6 4.2 0.6 10.3 0.2 2.8 2 1 0 2 2 2 0 MbeD/MobD like CENP-H PF05837.12 gi|307596111|ref|YP_003902428.1| - 0.56 10.6 9.3 0.37 11.2 1.9 2.3 1 1 1 2 2 2 0 Centromere protein H (CENP-H) ZapB PF06005.12 gi|307596111|ref|YP_003902428.1| - 0.56 10.7 10.6 4.2 7.9 0.5 2.5 2 1 0 2 2 2 0 Cell division protein ZapB DUF3552 PF12072.8 gi|307596111|ref|YP_003902428.1| - 0.62 9.4 5.9 3.9 6.9 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Nup54 PF13874.6 gi|307596111|ref|YP_003902428.1| - 0.63 10.1 6.6 22 5.2 6.2 2.2 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 TolA_bind_tri PF16331.5 gi|307596111|ref|YP_003902428.1| - 0.67 10.1 11.5 0.23 11.6 0.9 2.9 2 1 1 3 3 3 0 TolA binding protein trimerisation Lebercilin PF15619.6 gi|307596111|ref|YP_003902428.1| - 0.75 9.4 8.4 1.4 8.6 1.1 2.3 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease CENP-F_leu_zip PF10473.9 gi|307596111|ref|YP_003902428.1| - 0.96 9.5 12.2 0.38 10.8 2.4 2.3 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin_1 PF12718.7 gi|307596111|ref|YP_003902428.1| - 0.97 9.6 6.2 1.7 8.8 0.3 2.3 1 1 1 2 2 2 0 Tropomyosin like Csm1_N PF18504.1 gi|307596111|ref|YP_003902428.1| - 0.99 9.8 8.3 0.48 10.8 0.2 2.9 2 1 0 2 2 2 0 Csm1 N-terminal domain DUF5082 PF16888.5 gi|307596111|ref|YP_003902428.1| - 1 9.7 8.7 2.6 8.4 5.6 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) SlyX PF04102.12 gi|307596111|ref|YP_003902428.1| - 1.2 9.9 6.4 2.1 9.0 0.3 3.2 2 1 1 3 3 3 0 SlyX ACCA PF03255.14 gi|307596111|ref|YP_003902428.1| - 1.2 9.0 4.0 32 4.4 0.2 2.7 1 1 3 4 4 4 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EMP24_GP25L PF01105.24 gi|307596111|ref|YP_003902428.1| - 1.3 9.0 4.0 4.1 7.3 0.1 2.6 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Med4 PF10018.9 gi|307596111|ref|YP_003902428.1| - 1.7 8.3 4.6 16 5.1 4.6 2.3 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF724 PF05266.14 gi|307596111|ref|YP_003902428.1| - 2 8.2 5.0 10 5.9 1.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) YabA PF06156.13 gi|307596111|ref|YP_003902428.1| - 2.5 8.8 6.4 3.7e+02 1.8 6.4 2.9 1 1 0 1 1 1 0 Initiation control protein YabA Sec2p PF06428.11 gi|307596111|ref|YP_003902428.1| - 2.9 7.9 7.7 4.7 7.3 0.4 3.1 2 1 1 3 3 3 0 GDP/GTP exchange factor Sec2p PRKG1_interact PF15898.5 gi|307596111|ref|YP_003902428.1| - 3.4 8.6 8.3 16 6.4 2.2 2.2 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Hexapep PF00132.24 gi|307596112|ref|YP_003902429.1| - 1.2e-29 100.9 37.5 4.4e-09 35.7 3.4 5.3 3 1 1 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|307596112|ref|YP_003902429.1| - 4.3e-15 55.2 37.4 1.4e-08 34.3 3.1 5.2 4 2 1 5 5 5 4 Hexapeptide repeat of succinyl-transferase AAA PF00004.29 gi|307596113|ref|YP_003902430.1| - 7.6e-100 330.5 0.0 6.8e-50 168.9 0.0 2.9 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|307596113|ref|YP_003902430.1| - 3.5e-32 110.0 2.2 8.8e-16 57.4 0.0 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|307596113|ref|YP_003902430.1| - 5.3e-32 109.8 0.1 7.5e-31 106.2 0.4 2.8 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|307596113|ref|YP_003902430.1| - 1.2e-15 57.6 0.0 3e-07 30.3 0.0 3.0 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|307596113|ref|YP_003902430.1| - 6.7e-14 52.6 0.1 8e-06 26.3 0.0 4.2 3 2 1 4 4 4 2 AAA ATPase domain AAA_2 PF07724.14 gi|307596113|ref|YP_003902430.1| - 1.4e-13 51.3 0.0 2.7e-07 30.8 0.0 2.7 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|307596113|ref|YP_003902430.1| - 3.7e-12 46.7 0.1 0.00059 20.1 0.0 4.3 3 1 1 4 4 4 2 AAA domain AAA_5 PF07728.14 gi|307596113|ref|YP_003902430.1| - 8.6e-12 45.2 1.2 0.00023 21.2 0.3 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|307596113|ref|YP_003902430.1| - 2.4e-11 43.8 0.0 3.5e-05 23.9 0.0 3.1 2 1 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|307596113|ref|YP_003902430.1| - 7.2e-11 42.4 0.0 0.00012 22.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|307596113|ref|YP_003902430.1| - 4.4e-10 39.3 0.1 0.00065 19.0 0.0 3.0 3 0 0 3 3 3 2 TIP49 P-loop domain Vps4_C PF09336.10 gi|307596113|ref|YP_003902430.1| - 2e-09 37.3 1.1 0.0018 18.2 0.0 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain IstB_IS21 PF01695.17 gi|307596113|ref|YP_003902430.1| - 8.9e-09 35.3 0.0 0.004 16.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|307596113|ref|YP_003902430.1| - 1.1e-08 35.6 0.0 0.0067 17.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|307596113|ref|YP_003902430.1| - 1.5e-08 34.3 0.0 8.9e-08 31.8 0.0 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_28 PF13521.6 gi|307596113|ref|YP_003902430.1| - 7.1e-08 32.9 0.0 0.0059 16.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|307596113|ref|YP_003902430.1| - 5.6e-07 29.2 0.9 0.028 13.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|307596113|ref|YP_003902430.1| - 1.5e-06 28.1 0.1 0.095 12.4 0.0 3.4 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|307596113|ref|YP_003902430.1| - 3.2e-06 27.0 0.1 0.038 13.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|307596113|ref|YP_003902430.1| - 5.2e-06 26.1 0.0 0.077 12.5 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region PhoH PF02562.16 gi|307596113|ref|YP_003902430.1| - 7.2e-06 25.6 0.2 0.11 11.9 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein DUF815 PF05673.13 gi|307596113|ref|YP_003902430.1| - 8.8e-06 25.1 0.0 0.039 13.1 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|307596113|ref|YP_003902430.1| - 1e-05 25.9 0.0 0.29 11.5 0.0 2.8 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.27 gi|307596113|ref|YP_003902430.1| - 1.6e-05 25.4 0.0 0.19 12.2 0.0 2.7 2 0 0 2 2 2 2 ABC transporter Zeta_toxin PF06414.12 gi|307596113|ref|YP_003902430.1| - 2.4e-05 23.7 0.1 0.19 11.0 0.0 2.9 3 0 0 3 3 3 2 Zeta toxin ATPase PF06745.13 gi|307596113|ref|YP_003902430.1| - 4.5e-05 22.9 0.7 0.34 10.2 0.1 3.2 2 1 1 3 3 3 2 KaiC TsaE PF02367.17 gi|307596113|ref|YP_003902430.1| - 0.0001 22.3 0.1 0.81 9.7 0.0 2.7 2 1 1 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|307596113|ref|YP_003902430.1| - 0.00021 21.2 0.2 0.6 10.0 0.0 3.2 3 0 0 3 3 3 1 NACHT domain Guanylate_kin PF00625.21 gi|307596113|ref|YP_003902430.1| - 0.00025 20.8 0.2 16 5.1 0.0 4.3 2 2 2 4 4 4 0 Guanylate kinase AAA_3 PF07726.11 gi|307596113|ref|YP_003902430.1| - 0.00044 20.1 0.0 0.98 9.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|307596113|ref|YP_003902430.1| - 0.00047 19.8 7.4 1.7 8.1 0.0 4.5 3 1 2 5 5 4 2 AAA domain AAA_30 PF13604.6 gi|307596113|ref|YP_003902430.1| - 0.0006 19.6 2.7 0.79 9.4 0.0 3.7 4 0 0 4 4 3 1 AAA domain DUF2075 PF09848.9 gi|307596113|ref|YP_003902430.1| - 0.00066 19.0 0.0 0.3 10.3 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|307596113|ref|YP_003902430.1| - 0.0018 18.7 4.6 2.1 8.7 1.8 3.8 3 1 0 3 3 2 1 AAA domain AAA_11 PF13086.6 gi|307596113|ref|YP_003902430.1| - 0.0018 18.1 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.17 gi|307596113|ref|YP_003902430.1| - 0.0021 17.2 0.1 1.9 7.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.6 gi|307596113|ref|YP_003902430.1| - 0.0029 17.7 0.0 0.98 9.5 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|307596113|ref|YP_003902430.1| - 0.0039 17.1 0.4 3 7.7 0.1 3.2 2 2 1 3 3 2 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|307596113|ref|YP_003902430.1| - 0.004 17.0 0.0 1.2 8.9 0.0 2.9 3 1 0 3 3 2 1 Bacterial dnaA protein AAA_17 PF13207.6 gi|307596113|ref|YP_003902430.1| - 0.0052 17.2 0.0 3.2 8.2 0.0 2.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|307596113|ref|YP_003902430.1| - 0.0052 16.0 0.0 5.3 6.1 0.0 3.0 3 0 0 3 3 3 0 NB-ARC domain T2SSE PF00437.20 gi|307596113|ref|YP_003902430.1| - 0.0053 15.9 0.0 1.8 7.5 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|307596113|ref|YP_003902430.1| - 0.0096 15.7 0.0 2.7 7.7 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ATP-synt_ab PF00006.25 gi|307596113|ref|YP_003902430.1| - 0.013 15.2 0.0 1.9 8.1 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|307596113|ref|YP_003902430.1| - 0.022 14.5 0.0 0.55 9.9 0.0 2.6 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|307596113|ref|YP_003902430.1| - 0.028 14.4 0.0 10 6.1 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|307596113|ref|YP_003902430.1| - 0.03 14.1 0.0 7.5 6.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Cytidylate_kin PF02224.18 gi|307596113|ref|YP_003902430.1| - 0.031 14.0 0.1 11 5.7 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|307596113|ref|YP_003902430.1| - 0.032 13.1 0.1 12 4.7 0.0 3.1 4 0 0 4 4 3 0 AFG1-like ATPase UFD1 PF03152.14 gi|307596113|ref|YP_003902430.1| - 0.035 13.6 0.0 0.19 11.2 0.0 2.2 1 1 1 2 2 2 0 Ubiquitin fusion degradation protein UFD1 SRPRB PF09439.10 gi|307596113|ref|YP_003902430.1| - 0.067 12.6 0.0 5.3 6.4 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit SKI PF01202.22 gi|307596113|ref|YP_003902430.1| - 0.11 12.6 0.0 21 5.2 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase NTPase_1 PF03266.15 gi|307596113|ref|YP_003902430.1| - 0.12 12.3 6.9 16 5.4 0.0 4.8 5 1 1 6 6 4 0 NTPase HEPN_SAV_6107 PF18726.1 gi|307596113|ref|YP_003902430.1| - 0.13 12.8 0.3 2.7 8.6 0.1 2.6 2 0 0 2 2 2 0 SAV_6107-like HEPN MazE_antitoxin PF04014.18 gi|307596113|ref|YP_003902430.1| - 0.16 12.0 0.6 1.3 9.0 0.2 2.6 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin Roc PF08477.13 gi|307596113|ref|YP_003902430.1| - 0.19 12.0 0.0 14 5.9 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|307596113|ref|YP_003902430.1| - 0.19 11.3 0.1 16 5.0 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SapB_1 PF05184.15 gi|307596116|ref|YP_003902433.1| - 0.15 12.1 0.8 0.53 10.4 0.3 2.1 1 1 1 2 2 2 0 Saposin-like type B, region 1 ACP_syn_III_C PF08541.10 gi|307596117|ref|YP_003902434.1| - 1.3e-14 54.1 0.0 4.4e-14 52.4 0.0 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|307596117|ref|YP_003902434.1| - 6.3e-09 35.6 0.1 1.4e-08 34.4 0.0 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|307596117|ref|YP_003902434.1| - 0.00025 20.8 0.1 0.0064 16.2 0.0 2.1 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|307596117|ref|YP_003902434.1| - 0.0026 17.6 0.0 0.0057 16.5 0.0 1.5 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|307596117|ref|YP_003902434.1| - 0.017 15.0 0.7 0.077 12.9 0.2 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.26 gi|307596117|ref|YP_003902434.1| - 0.033 13.8 0.2 0.58 9.7 0.0 2.4 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain HTH_24 PF13412.6 gi|307596118|ref|YP_003902435.1| - 2.5e-08 33.3 1.3 2.5e-08 33.3 0.3 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|307596118|ref|YP_003902435.1| - 1.3e-06 28.4 0.0 2.1e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain FaeA PF04703.12 gi|307596118|ref|YP_003902435.1| - 1.3e-05 25.4 0.0 1.8e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_Mga PF08280.11 gi|307596118|ref|YP_003902435.1| - 2.4e-05 24.3 0.3 3.5e-05 23.7 0.3 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.19 gi|307596118|ref|YP_003902435.1| - 3.1e-05 23.8 0.1 6.4e-05 22.8 0.1 1.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|307596118|ref|YP_003902435.1| - 6.4e-05 22.7 0.8 8.6e-05 22.3 0.2 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|307596118|ref|YP_003902435.1| - 9.6e-05 22.2 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|307596118|ref|YP_003902435.1| - 0.00087 19.1 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|307596118|ref|YP_003902435.1| - 0.0014 18.6 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_27 PF13463.6 gi|307596118|ref|YP_003902435.1| - 0.0018 18.7 0.1 0.005 17.3 0.0 1.8 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|307596118|ref|YP_003902435.1| - 0.002 18.1 0.1 0.0023 17.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Penicillinase_R PF03965.16 gi|307596118|ref|YP_003902435.1| - 0.0027 18.1 0.4 0.0034 17.7 0.4 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.7 gi|307596118|ref|YP_003902435.1| - 0.0047 17.0 0.1 0.0086 16.1 0.0 1.4 2 0 0 2 2 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|307596118|ref|YP_003902435.1| - 0.0057 16.5 1.8 0.014 15.3 1.8 1.6 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_micro PF17007.5 gi|307596118|ref|YP_003902435.1| - 0.0058 15.5 0.4 0.0065 15.3 0.4 1.0 1 0 0 1 1 1 1 HTH-like GntR PF00392.21 gi|307596118|ref|YP_003902435.1| - 0.0063 16.1 1.1 0.077 12.7 0.2 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_46 PF15977.5 gi|307596118|ref|YP_003902435.1| - 0.0076 16.2 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA binding HTH_41 PF14502.6 gi|307596118|ref|YP_003902435.1| - 0.0077 15.9 2.3 0.07 12.8 0.1 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|307596118|ref|YP_003902435.1| - 0.0089 15.9 0.9 0.011 15.7 0.2 1.5 2 0 0 2 2 2 1 MarR family PheRS_DBD1 PF18552.1 gi|307596118|ref|YP_003902435.1| - 0.0099 15.6 0.3 0.021 14.5 0.1 1.6 2 0 0 2 2 2 1 PheRS DNA binding domain 1 HTH_11 PF08279.12 gi|307596118|ref|YP_003902435.1| - 0.015 15.3 0.2 0.023 14.7 0.2 1.3 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.12 gi|307596118|ref|YP_003902435.1| - 0.024 14.4 0.1 0.049 13.4 0.1 1.6 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|307596118|ref|YP_003902435.1| - 0.026 14.4 0.0 0.46 10.4 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain FUR PF01475.19 gi|307596118|ref|YP_003902435.1| - 0.032 14.4 0.2 0.053 13.7 0.2 1.4 1 1 0 1 1 1 0 Ferric uptake regulator family RNA_pol_Rpc34 PF05158.12 gi|307596118|ref|YP_003902435.1| - 0.056 12.8 0.4 0.065 12.6 0.4 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Rrf2 PF02082.20 gi|307596118|ref|YP_003902435.1| - 0.07 13.5 0.1 0.08 13.3 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator B-block_TFIIIC PF04182.12 gi|307596118|ref|YP_003902435.1| - 0.085 13.0 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FeoB_Cyto PF17910.1 gi|307596118|ref|YP_003902435.1| - 0.1 13.1 2.5 0.18 12.4 2.5 1.5 1 1 0 1 1 1 0 FeoB cytosolic helical domain CTP-dep_RFKase PF01982.16 gi|307596119|ref|YP_003902436.1| - 1.1e-44 151.4 0.0 2e-44 150.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.6 gi|307596119|ref|YP_003902436.1| - 0.0006 19.7 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|307596119|ref|YP_003902436.1| - 0.0019 18.1 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|307596119|ref|YP_003902436.1| - 0.0081 16.3 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|307596119|ref|YP_003902436.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|307596119|ref|YP_003902436.1| - 0.012 15.1 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MazE_antitoxin PF04014.18 gi|307596119|ref|YP_003902436.1| - 0.04 13.9 0.0 0.44 10.5 0.1 2.4 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin Fe_dep_repress PF01325.19 gi|307596119|ref|YP_003902436.1| - 0.049 13.8 0.1 0.14 12.4 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Aldolase_II PF00596.21 gi|307596120|ref|YP_003902437.1| - 7.2e-46 156.5 0.0 8.2e-46 156.3 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Amidohydro_2 PF04909.14 gi|307596121|ref|YP_003902438.1| - 5.2e-29 102.0 0.3 7.5e-29 101.4 0.3 1.2 1 0 0 1 1 1 1 Amidohydrolase AP_endonuc_2 PF01261.24 gi|307596121|ref|YP_003902438.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Amidohydro_1 PF01979.20 gi|307596121|ref|YP_003902438.1| - 0.14 11.4 0.0 0.2 11.0 0.0 1.4 1 1 0 1 1 1 0 Amidohydrolase family TM_helix PF05552.12 gi|307596123|ref|YP_003902440.1| - 5.2e-12 45.5 15.1 5.5e-09 35.9 7.1 5.5 5 2 2 7 7 7 2 Conserved TM helix NADH-u_ox-rdase PF10785.9 gi|307596123|ref|YP_003902440.1| - 1.7 9.4 7.4 4.1 8.2 0.1 3.7 4 1 1 5 5 5 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit SNARE_assoc PF09335.11 gi|307596124|ref|YP_003902441.1| - 0.00016 22.1 2.8 0.00016 22.1 2.8 2.2 2 1 0 2 2 2 1 SNARE associated Golgi protein GGDEF_2 PF17853.1 gi|307596124|ref|YP_003902441.1| - 0.029 14.6 0.0 0.045 14.0 0.0 1.3 1 0 0 1 1 1 0 GGDEF-like domain Lon_C PF05362.13 gi|307596125|ref|YP_003902442.1| - 1.1e-10 41.5 0.1 1.8e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF2808 PF10989.8 gi|307596125|ref|YP_003902442.1| - 0.0032 17.5 0.0 0.0084 16.1 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2808) Sel1 PF08238.12 gi|307596125|ref|YP_003902442.1| - 0.027 15.1 0.4 4.8 8.0 0.5 3.0 2 0 0 2 2 2 0 Sel1 repeat ChlI PF13541.6 gi|307596125|ref|YP_003902442.1| - 0.03 14.2 0.0 0.12 12.2 0.0 2.0 2 0 0 2 2 2 0 Subunit ChlI of Mg-chelatase MscS_porin PF12795.7 gi|307596125|ref|YP_003902442.1| - 0.37 10.3 5.8 0.044 13.3 1.1 1.8 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain CoatB PF10389.9 gi|307596125|ref|YP_003902442.1| - 0.84 9.5 3.9 8 6.4 2.7 2.8 2 0 0 2 2 2 0 Bacteriophage coat protein B DASH_Dad2 PF08654.10 gi|307596125|ref|YP_003902442.1| - 2.3 8.7 3.6 1.1 9.7 0.1 2.4 3 0 0 3 3 3 0 DASH complex subunit Dad2 OTCace PF00185.24 gi|307596126|ref|YP_003902443.1| - 4.9e-58 195.6 0.0 2e-56 190.4 0.0 2.1 2 0 0 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|307596126|ref|YP_003902443.1| - 2.4e-47 160.7 0.0 3.5e-47 160.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TP6A_N PF04406.14 gi|307596127|ref|YP_003902444.1| - 1.5e-21 76.1 0.1 2.9e-21 75.2 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|307596127|ref|YP_003902444.1| - 0.15 11.9 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Radical_SAM PF04055.21 gi|307596128|ref|YP_003902445.1| - 1.8e-26 93.5 0.0 2.5e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|307596128|ref|YP_003902445.1| - 2e-22 79.5 0.0 3.1e-22 78.9 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|307596128|ref|YP_003902445.1| - 5.2e-06 26.8 0.0 9.3e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|307596128|ref|YP_003902445.1| - 5.8e-06 26.4 0.0 1.1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain QueF PF14489.6 gi|307596129|ref|YP_003902446.1| - 1.1e-07 31.9 0.0 1.5e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 QueF-like protein Pullulanase_Ins PF18494.1 gi|307596129|ref|YP_003902446.1| - 0.11 12.9 0.0 0.19 12.2 0.0 1.6 1 1 0 1 1 1 0 Pullulanase Ins domain TrbL PF04610.14 gi|307596130|ref|YP_003902447.1| - 0.0044 16.8 2.5 0.0064 16.3 2.5 1.2 1 0 0 1 1 1 1 TrbL/VirB6 plasmid conjugal transfer protein NAD_synthase PF02540.17 gi|307596131|ref|YP_003902448.1| - 1.1e-79 266.9 0.0 1.3e-79 266.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|307596131|ref|YP_003902448.1| - 2e-09 36.7 0.0 2.4e-07 29.9 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|307596131|ref|YP_003902448.1| - 0.00038 20.0 0.0 0.0008 19.0 0.0 1.5 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|307596131|ref|YP_003902448.1| - 0.0031 17.2 0.0 0.0045 16.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 gi|307596131|ref|YP_003902448.1| - 0.074 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) SQHop_cyclase_N PF13249.6 gi|307596131|ref|YP_003902448.1| - 0.16 11.0 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Squalene-hopene cyclase N-terminal domain CN_hydrolase PF00795.22 gi|307596132|ref|YP_003902449.1| - 1.2e-49 169.0 0.0 1.3e-49 168.9 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Iso_dh PF00180.20 gi|307596133|ref|YP_003902450.1| - 1.3e-105 353.4 0.0 1.6e-105 353.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TP_methylase PF00590.20 gi|307596134|ref|YP_003902451.1| - 5.7e-29 101.6 0.1 7e-29 101.3 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases UPRTase PF14681.6 gi|307596134|ref|YP_003902451.1| - 0.0025 17.3 0.0 0.0036 16.8 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase MJ1316 PF04457.12 gi|307596135|ref|YP_003902452.1| - 2.4e-16 60.2 0.3 2.7e-16 60.1 0.3 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain YcxB PF14317.6 gi|307596135|ref|YP_003902452.1| - 0.016 14.9 0.1 0.071 12.8 0.0 1.8 2 0 0 2 2 2 0 YcxB-like protein 2-Hacid_dh_C PF02826.19 gi|307596136|ref|YP_003902453.1| - 1.9e-64 216.3 0.0 2.5e-64 215.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|307596136|ref|YP_003902453.1| - 4.8e-27 94.2 0.0 5.8e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|307596136|ref|YP_003902453.1| - 5.1e-09 36.5 0.0 1.4e-08 35.1 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|307596136|ref|YP_003902453.1| - 0.00012 22.6 0.0 0.0003 21.3 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|307596136|ref|YP_003902453.1| - 0.014 15.4 0.2 0.18 11.8 0.0 2.3 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.21 gi|307596136|ref|YP_003902453.1| - 0.034 14.2 0.1 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NUDIX PF00293.28 gi|307596137|ref|YP_003902454.1| - 2.5e-14 53.4 0.0 3.2e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DBC1 PF14443.6 gi|307596137|ref|YP_003902454.1| - 0.02 14.8 0.0 0.052 13.5 0.0 1.6 2 0 0 2 2 2 0 DBC1 Cyclase PF04199.13 gi|307596138|ref|YP_003902455.1| - 4e-29 101.6 0.0 5.6e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Glu_dehyd_C PF16912.5 gi|307596140|ref|YP_003902457.1| - 4.5e-66 222.3 0.1 5.7e-66 222.0 0.1 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|307596140|ref|YP_003902457.1| - 3.6e-13 49.4 0.1 6.6e-13 48.5 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|307596140|ref|YP_003902457.1| - 8.8e-09 35.4 0.1 1.5e-08 34.7 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|307596140|ref|YP_003902457.1| - 6e-07 29.6 0.0 1.1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|307596140|ref|YP_003902457.1| - 0.2 11.0 0.2 0.66 9.3 0.1 1.7 2 0 0 2 2 2 0 ThiF family NDK PF00334.19 gi|307596141|ref|YP_003902458.1| - 8.3e-44 148.9 0.0 1.1e-22 80.5 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase Aminotran_3 PF00202.21 gi|307596142|ref|YP_003902459.1| - 4.2e-66 223.3 0.0 5.3e-66 222.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|307596142|ref|YP_003902459.1| - 0.00068 18.9 0.0 0.00082 18.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II GlutR_N PF05201.15 gi|307596143|ref|YP_003902460.1| - 1.8e-25 89.4 0.0 1.1e-24 86.8 0.0 2.0 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|307596143|ref|YP_003902460.1| - 1.9e-15 57.2 1.8 3.7e-15 56.2 0.1 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|307596143|ref|YP_003902460.1| - 9.5e-13 48.4 5.0 1.3e-12 47.9 3.8 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain Sacchrp_dh_NADP PF03435.18 gi|307596143|ref|YP_003902460.1| - 6e-05 23.3 0.2 0.00049 20.4 0.0 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|307596143|ref|YP_003902460.1| - 0.00059 20.4 0.1 0.0046 17.5 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|307596143|ref|YP_003902460.1| - 0.00066 20.1 0.3 0.0023 18.3 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|307596143|ref|YP_003902460.1| - 0.0046 17.2 0.4 0.026 14.8 0.4 2.3 1 1 0 1 1 1 1 TrkA-N domain MetRS-N PF09635.10 gi|307596143|ref|YP_003902460.1| - 0.017 15.7 0.5 0.036 14.6 0.5 1.5 1 0 0 1 1 1 0 MetRS-N binding domain SBP_bac_3 PF00497.20 gi|307596143|ref|YP_003902460.1| - 0.18 11.2 0.1 9 5.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 Peptidase_M20 PF01546.28 gi|307596144|ref|YP_003902461.1| - 1.3e-30 106.7 0.0 1.6e-30 106.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|307596144|ref|YP_003902461.1| - 1.9e-18 66.3 0.0 3.5e-18 65.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|307596144|ref|YP_003902461.1| - 0.00032 20.5 0.0 0.00047 19.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 THUMP PF02926.17 gi|307596145|ref|YP_003902462.1| - 3.8e-15 56.2 0.0 6.2e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Ribosomal_L15e PF00827.17 gi|307596147|ref|YP_003902464.1| - 1.3e-62 210.9 6.5 1.5e-62 210.7 6.5 1.0 1 0 0 1 1 1 1 Ribosomal L15 Rpn9_C PF18261.1 gi|307596147|ref|YP_003902464.1| - 0.02 14.5 0.2 0.039 13.5 0.2 1.4 1 0 0 1 1 1 0 Rpn9 C-terminal helix RNA_binding PF01877.17 gi|307596148|ref|YP_003902465.1| - 2.8e-26 92.1 0.0 3.1e-26 92.0 0.0 1.0 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.16 gi|307596149|ref|YP_003902466.1| - 3.1e-13 49.7 0.8 1.2e-12 47.8 1.1 1.6 2 0 0 2 2 2 1 RNase P subunit p30 Peptidase_C47 PF05543.13 gi|307596149|ref|YP_003902466.1| - 0.022 14.3 0.1 0.033 13.8 0.1 1.2 1 0 0 1 1 1 0 Staphopain peptidase C47 RNase_P_Rpp14 PF01900.19 gi|307596150|ref|YP_003902467.1| - 0.015 15.5 0.2 0.022 15.0 0.2 1.4 1 1 0 1 1 1 0 Rpp14/Pop5 family Flavin_Reduct PF01613.18 gi|307596151|ref|YP_003902468.1| - 1.4e-40 138.8 0.0 1.6e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain ABC_tran PF00005.27 gi|307596152|ref|YP_003902469.1| - 8.7e-31 107.3 0.0 1.1e-30 106.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|307596152|ref|YP_003902469.1| - 1.3e-19 70.5 0.3 2.2e-19 69.7 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|307596152|ref|YP_003902469.1| - 0.00044 20.5 0.8 0.0029 17.9 0.8 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|307596152|ref|YP_003902469.1| - 0.0054 16.2 0.2 0.15 11.5 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|307596152|ref|YP_003902469.1| - 0.0086 16.5 0.0 0.031 14.7 0.0 1.8 1 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|307596152|ref|YP_003902469.1| - 0.023 14.5 1.1 1.2 8.9 0.1 2.2 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|307596152|ref|YP_003902469.1| - 0.024 14.4 0.1 0.041 13.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|307596152|ref|YP_003902469.1| - 0.026 13.9 0.1 0.046 13.1 0.1 1.3 1 0 0 1 1 1 0 KaiC NACHT PF05729.12 gi|307596152|ref|YP_003902469.1| - 0.044 13.7 0.1 0.08 12.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|307596152|ref|YP_003902469.1| - 0.065 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|307596152|ref|YP_003902469.1| - 0.094 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|307596152|ref|YP_003902469.1| - 0.096 13.2 0.0 0.18 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|307596152|ref|YP_003902469.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|307596152|ref|YP_003902469.1| - 0.14 12.1 0.4 0.35 10.8 0.1 1.7 2 0 0 2 2 2 0 NTPase Septin PF00735.18 gi|307596152|ref|YP_003902469.1| - 0.17 11.2 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 Septin DUF3987 PF13148.6 gi|307596152|ref|YP_003902469.1| - 0.18 10.8 0.0 0.28 10.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) APS_kinase PF01583.20 gi|307596152|ref|YP_003902469.1| - 0.2 11.6 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_13 PF13166.6 gi|307596152|ref|YP_003902469.1| - 0.23 10.1 0.5 6.4 5.3 0.3 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|307596153|ref|YP_003902470.1| - 3.2e-32 111.9 0.0 4.5e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|307596153|ref|YP_003902470.1| - 9.9e-18 64.4 0.0 1.8e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|307596153|ref|YP_003902470.1| - 3.5e-08 33.6 0.1 8e-05 22.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|307596153|ref|YP_003902470.1| - 6.7e-05 22.4 0.2 0.014 14.9 0.0 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|307596153|ref|YP_003902470.1| - 0.00025 21.3 0.2 0.0036 17.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307596153|ref|YP_003902470.1| - 0.00052 20.4 0.0 0.00075 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|307596153|ref|YP_003902470.1| - 0.00091 19.2 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|307596153|ref|YP_003902470.1| - 0.0012 18.6 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|307596153|ref|YP_003902470.1| - 0.0012 18.4 0.1 0.0024 17.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|307596153|ref|YP_003902470.1| - 0.0018 17.7 0.1 0.11 11.9 0.1 2.2 2 0 0 2 2 2 1 Bacterial TniB protein NACHT PF05729.12 gi|307596153|ref|YP_003902470.1| - 0.0022 17.9 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DUF87 PF01935.17 gi|307596153|ref|YP_003902470.1| - 0.0031 17.6 0.0 0.0072 16.4 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_5 PF07728.14 gi|307596153|ref|YP_003902470.1| - 0.0085 16.1 0.0 0.086 12.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|307596153|ref|YP_003902470.1| - 0.0093 15.7 0.0 0.074 12.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|307596153|ref|YP_003902470.1| - 0.014 15.1 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|307596153|ref|YP_003902470.1| - 0.016 15.6 0.0 0.045 14.2 0.0 1.8 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.17 gi|307596153|ref|YP_003902470.1| - 0.016 14.9 0.1 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_13 PF13166.6 gi|307596153|ref|YP_003902470.1| - 0.035 12.8 0.0 0.85 8.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|307596153|ref|YP_003902470.1| - 0.043 12.7 0.0 0.069 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain APS_kinase PF01583.20 gi|307596153|ref|YP_003902470.1| - 0.048 13.5 0.0 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|307596153|ref|YP_003902470.1| - 0.053 13.7 0.0 0.099 12.8 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA PF00004.29 gi|307596153|ref|YP_003902470.1| - 0.1 13.0 0.1 0.66 10.4 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF1499 PF07386.11 gi|307596153|ref|YP_003902470.1| - 0.11 13.1 0.0 19 5.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1499) AAA_18 PF13238.6 gi|307596153|ref|YP_003902470.1| - 0.13 12.8 0.0 0.29 11.7 0.0 1.6 2 0 0 2 2 1 0 AAA domain Sigma54_activat PF00158.26 gi|307596153|ref|YP_003902470.1| - 0.15 11.8 0.1 0.36 10.5 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|307596153|ref|YP_003902470.1| - 0.17 11.0 0.0 0.29 10.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|307596153|ref|YP_003902470.1| - 0.19 11.8 0.0 0.38 10.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.25 gi|307596153|ref|YP_003902470.1| - 0.2 11.3 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.6 gi|307596153|ref|YP_003902470.1| - 0.25 11.0 0.0 0.37 10.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|307596154|ref|YP_003902471.1| - 7.6e-24 84.5 26.7 1.4e-23 83.6 22.6 2.4 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|307596155|ref|YP_003902472.1| - 1.2e-28 100.1 17.0 1.2e-28 100.1 17.0 2.6 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|307596156|ref|YP_003902473.1| - 5.7e-15 55.2 4.3 3.7e-10 39.3 0.0 3.3 2 2 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle PRIMA1 PF16101.5 gi|307596156|ref|YP_003902473.1| - 0.03 14.4 10.6 0.07 13.2 10.6 1.6 1 0 0 1 1 1 0 Proline-rich membrane anchor 1 Mito_fiss_reg PF05308.11 gi|307596156|ref|YP_003902473.1| - 1.8 8.6 4.3 2.8 7.9 4.3 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator Ribosomal_L39 PF00832.20 gi|307596158|ref|YP_003902475.1| - 9.6e-19 66.7 6.9 1.2e-18 66.5 6.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.20 gi|307596159|ref|YP_003902476.1| - 7.5e-24 84.2 11.8 1e-23 83.7 11.8 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain RE_XamI PF09572.10 gi|307596159|ref|YP_003902476.1| - 0.028 14.1 1.0 0.04 13.6 0.9 1.3 1 1 0 1 1 1 0 XamI restriction endonuclease DUF4404 PF14357.6 gi|307596159|ref|YP_003902476.1| - 0.096 13.3 3.8 0.12 13.1 2.5 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) AAA_28 PF13521.6 gi|307596159|ref|YP_003902476.1| - 0.45 10.8 4.0 5 7.4 2.0 2.0 1 1 1 2 2 2 0 AAA domain Ribosomal_S19e PF01090.19 gi|307596160|ref|YP_003902477.1| - 2.5e-49 166.5 0.0 2.9e-49 166.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|307596160|ref|YP_003902477.1| - 0.00092 19.0 0.0 0.05 13.5 0.0 2.3 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|307596160|ref|YP_003902477.1| - 0.0076 16.2 0.0 0.017 15.1 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix HemN_C PF06969.16 gi|307596160|ref|YP_003902477.1| - 0.041 13.9 0.0 0.08 13.0 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain TFIIS_C PF01096.18 gi|307596161|ref|YP_003902478.1| - 3.6e-20 71.5 14.2 1.7e-19 69.4 4.6 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|307596161|ref|YP_003902478.1| - 1.7e-10 40.6 6.8 4.1e-08 33.0 0.2 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|307596161|ref|YP_003902478.1| - 5.6e-07 29.4 12.2 0.0002 21.3 2.1 2.5 2 1 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|307596161|ref|YP_003902478.1| - 5.2e-06 26.3 7.3 0.014 15.3 1.0 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|307596161|ref|YP_003902478.1| - 1.1e-05 25.3 3.6 0.0014 18.6 0.0 2.6 2 1 0 2 2 2 1 PhnA Zinc-Ribbon zf-TFIIB PF13453.6 gi|307596161|ref|YP_003902478.1| - 3.2e-05 23.2 0.7 3.2e-05 23.2 0.7 2.8 2 1 0 2 2 2 1 Transcription factor zinc-finger Lar_restr_allev PF14354.6 gi|307596161|ref|YP_003902478.1| - 3.6e-05 24.1 7.1 0.04 14.3 0.4 2.3 2 0 0 2 2 2 2 Restriction alleviation protein Lar DUF2387 PF09526.10 gi|307596161|ref|YP_003902478.1| - 4.4e-05 23.5 6.9 0.0052 16.9 0.3 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) UPF0547 PF10571.9 gi|307596161|ref|YP_003902478.1| - 4.9e-05 23.3 13.7 1.4 9.1 0.1 4.2 4 0 0 4 4 4 3 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|307596161|ref|YP_003902478.1| - 5.4e-05 22.6 8.0 0.0086 15.6 0.6 2.9 2 1 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|307596161|ref|YP_003902478.1| - 5.6e-05 23.1 7.1 0.045 13.8 0.6 2.6 2 1 0 2 2 2 2 Double zinc ribbon Nudix_N_2 PF14803.6 gi|307596161|ref|YP_003902478.1| - 0.00093 19.1 9.3 0.27 11.2 2.2 3.5 3 1 0 3 3 3 2 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|307596161|ref|YP_003902478.1| - 0.0046 16.3 14.8 1.6 8.2 0.6 4.2 4 0 0 4 4 4 1 zinc-ribbon domain IBR PF01485.21 gi|307596161|ref|YP_003902478.1| - 0.0059 16.8 10.1 0.018 15.3 1.3 2.8 2 1 1 3 3 3 1 IBR domain, a half RING-finger domain A2L_zn_ribbon PF08792.10 gi|307596161|ref|YP_003902478.1| - 0.012 15.3 9.7 0.073 12.8 0.4 3.3 3 1 0 3 3 3 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|307596161|ref|YP_003902478.1| - 0.015 15.0 21.0 0.17 11.6 0.2 4.2 4 0 0 4 4 4 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|307596161|ref|YP_003902478.1| - 0.016 15.2 0.6 0.016 15.2 0.6 3.1 3 1 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|307596161|ref|YP_003902478.1| - 0.021 15.0 11.7 8.6 6.6 0.1 4.1 3 1 1 4 4 4 0 Zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|307596161|ref|YP_003902478.1| - 0.024 14.4 8.3 0.27 11.0 1.2 3.2 3 0 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Rubredoxin PF00301.20 gi|307596161|ref|YP_003902478.1| - 0.028 14.5 15.2 1.2 9.3 0.2 4.1 4 0 0 4 4 4 0 Rubredoxin PHD_4 PF16866.5 gi|307596161|ref|YP_003902478.1| - 0.05 13.7 3.6 0.81 9.8 1.0 2.5 2 0 0 2 2 2 0 PHD-finger GFA PF04828.14 gi|307596161|ref|YP_003902478.1| - 0.063 13.6 6.1 1.7 9.0 0.2 3.0 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme Auto_anti-p27 PF06677.12 gi|307596161|ref|YP_003902478.1| - 0.091 12.9 2.0 0.091 12.9 2.0 3.1 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|307596161|ref|YP_003902478.1| - 0.097 12.7 7.5 0.12 12.4 0.7 2.6 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|307596161|ref|YP_003902478.1| - 0.11 12.5 14.3 3.7 7.5 3.9 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|307596161|ref|YP_003902478.1| - 0.13 12.8 0.5 0.13 12.8 0.5 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Elf1 PF05129.13 gi|307596161|ref|YP_003902478.1| - 0.14 12.2 7.8 0.25 11.4 0.4 2.8 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like HalOD2 PF18547.1 gi|307596161|ref|YP_003902478.1| - 0.15 12.0 0.1 0.15 12.0 0.1 3.3 4 0 0 4 4 3 0 Halobacterial output domain 2 NRDD PF13597.6 gi|307596161|ref|YP_003902478.1| - 0.22 10.2 3.6 0.97 8.1 0.3 2.0 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-ISL3 PF14690.6 gi|307596161|ref|YP_003902478.1| - 0.23 12.1 14.2 3.9 8.2 0.4 3.7 3 1 1 4 4 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Mss51 PF13824.6 gi|307596161|ref|YP_003902478.1| - 0.24 11.5 10.5 4.6 7.4 0.8 3.2 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_ribbon_SprT PF17283.2 gi|307596161|ref|YP_003902478.1| - 0.27 11.2 16.6 2.7 8.0 1.1 3.8 3 1 0 4 4 4 0 SprT-like zinc ribbon domain zf-ACC PF17848.1 gi|307596161|ref|YP_003902478.1| - 0.36 10.9 11.7 33 4.7 0.3 4.3 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain eIF-5_eIF-2B PF01873.17 gi|307596161|ref|YP_003902478.1| - 0.38 10.7 4.4 2.4 8.1 0.6 2.2 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zf-C4_Topoisom PF01396.19 gi|307596161|ref|YP_003902478.1| - 0.41 10.5 13.8 3.7 7.4 0.2 3.7 4 0 0 4 4 3 0 Topoisomerase DNA binding C4 zinc finger DUF4379 PF14311.6 gi|307596161|ref|YP_003902478.1| - 0.54 10.7 16.9 19 5.7 10.8 3.5 2 1 1 3 3 3 0 Probable Zinc-ribbon domain DUF2072 PF09845.9 gi|307596161|ref|YP_003902478.1| - 0.6 10.4 6.7 1.8 8.8 0.3 2.7 1 1 1 3 3 3 0 Zn-ribbon containing protein Baculo_LEF5_C PF11792.8 gi|307596161|ref|YP_003902478.1| - 0.63 9.8 0.0 0.63 9.8 0.0 3.2 4 0 0 4 4 3 0 Baculoviridae late expression factor 5 C-terminal domain Zn_Tnp_IS91 PF14319.6 gi|307596161|ref|YP_003902478.1| - 0.77 9.8 10.8 2.7 8.1 0.4 3.3 2 2 1 3 3 3 0 Transposase zinc-binding domain Anti-TRAP PF15777.5 gi|307596161|ref|YP_003902478.1| - 0.83 9.7 7.8 4.7 7.3 2.3 3.2 3 1 0 3 3 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Ogr_Delta PF04606.12 gi|307596161|ref|YP_003902478.1| - 0.85 9.7 10.8 12 6.0 0.0 3.5 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger Rubredoxin_2 PF18073.1 gi|307596161|ref|YP_003902478.1| - 0.91 9.3 20.2 0.64 9.8 0.5 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf_C2H2_10 PF18414.1 gi|307596161|ref|YP_003902478.1| - 1.1 8.8 17.0 1.5 8.4 0.3 3.8 4 0 0 4 4 4 0 C2H2 type zinc-finger YhfH PF14149.6 gi|307596161|ref|YP_003902478.1| - 1.1 9.2 9.8 2.8 8.0 0.2 3.9 4 0 0 4 4 4 0 YhfH-like protein Cys_rich_KTR PF14205.6 gi|307596161|ref|YP_003902478.1| - 1.4 8.8 9.1 3 7.7 0.5 3.3 2 1 1 3 3 3 0 Cysteine-rich KTR Terminase_GpA PF05876.12 gi|307596161|ref|YP_003902478.1| - 1.5 7.2 6.6 2 6.9 1.1 2.1 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) zinc_ribbon_13 PF09855.9 gi|307596161|ref|YP_003902478.1| - 1.7 8.8 11.4 3.8 7.8 0.1 3.8 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc-ribbons_6 PF07191.12 gi|307596161|ref|YP_003902478.1| - 1.7 8.6 8.8 1.3 9.0 0.8 2.7 2 2 1 3 3 3 0 zinc-ribbons zinc_ribbon_9 PF14369.6 gi|307596161|ref|YP_003902478.1| - 1.8 8.9 9.1 32 4.9 0.0 3.8 3 1 1 4 4 4 0 zinc-ribbon zf-tcix PF14952.6 gi|307596161|ref|YP_003902478.1| - 2.1 8.1 15.1 3.6 7.3 0.4 4.0 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding C1_1 PF00130.22 gi|307596161|ref|YP_003902478.1| - 2.2 8.3 10.0 0.28 11.1 1.1 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_RNApol_7kD PF03604.13 gi|307596161|ref|YP_003902478.1| - 2.3 7.9 12.8 0.36 10.5 0.6 3.4 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|307596161|ref|YP_003902478.1| - 2.5 7.8 14.2 2.9 7.6 0.1 4.0 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger FdhE PF04216.12 gi|307596161|ref|YP_003902478.1| - 3.8 7.3 6.7 0.23 11.3 0.2 2.0 2 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation Ribosomal_L37ae PF01780.19 gi|307596161|ref|YP_003902478.1| - 4.4 7.5 9.7 0.36 11.0 0.8 2.8 2 1 0 2 2 2 0 Ribosomal L37ae protein family zf-LITAF-like PF10601.9 gi|307596161|ref|YP_003902478.1| - 4.9 7.5 8.6 35 4.7 0.0 3.5 3 1 0 3 3 3 0 LITAF-like zinc ribbon domain ADK_lid PF05191.14 gi|307596161|ref|YP_003902478.1| - 8.4 6.5 10.5 3.5 7.7 0.1 3.7 3 1 0 3 3 3 0 Adenylate kinase, active site lid PCNA_N PF00705.18 gi|307596162|ref|YP_003902479.1| - 1.7e-13 50.4 0.1 2.7e-11 43.2 0.0 2.3 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|307596162|ref|YP_003902479.1| - 1.6e-10 41.3 0.6 4.7e-09 36.5 0.3 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|307596162|ref|YP_003902479.1| - 2.8e-06 26.6 0.0 0.0041 16.2 0.0 2.1 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|307596162|ref|YP_003902479.1| - 0.0015 18.1 0.0 0.0019 17.7 0.0 1.3 1 1 0 1 1 1 1 Rad9 DNA_primase_S PF01896.19 gi|307596163|ref|YP_003902480.1| - 8.8e-24 84.5 0.0 1.5e-23 83.8 0.0 1.4 1 0 0 1 1 1 1 DNA primase small subunit MRP-S27 PF10037.9 gi|307596164|ref|YP_003902481.1| - 0.0039 16.1 0.4 0.0045 15.9 0.4 1.0 1 0 0 1 1 1 1 Mitochondrial 28S ribosomal protein S27 Ribosomal_L44 PF00935.19 gi|307596165|ref|YP_003902482.1| - 5.6e-27 94.0 6.8 8.2e-27 93.5 6.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 RNA_POL_M_15KD PF02150.16 gi|307596165|ref|YP_003902482.1| - 0.0046 16.8 0.9 0.06 13.2 0.1 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|307596165|ref|YP_003902482.1| - 0.0063 16.4 2.0 2.5 8.1 0.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|307596165|ref|YP_003902482.1| - 0.046 14.0 1.0 0.91 9.8 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Auto_anti-p27 PF06677.12 gi|307596165|ref|YP_003902482.1| - 0.064 13.4 3.5 2.2 8.5 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin_2 PF18073.1 gi|307596165|ref|YP_003902482.1| - 0.068 12.9 2.7 1.1 9.1 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|307596165|ref|YP_003902482.1| - 0.083 12.3 2.2 1.2 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|307596165|ref|YP_003902482.1| - 0.13 12.4 2.0 6.1 7.0 2.4 2.2 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 RecR PF02132.15 gi|307596165|ref|YP_003902482.1| - 0.13 11.8 1.7 0.76 9.4 0.2 2.3 2 0 0 2 2 2 0 RecR protein Ribosomal_L33 PF00471.20 gi|307596165|ref|YP_003902482.1| - 0.59 10.6 0.3 0.59 10.6 0.3 2.8 2 1 1 3 3 2 0 Ribosomal protein L33 Zn_Tnp_IS1 PF03811.13 gi|307596165|ref|YP_003902482.1| - 0.87 9.4 6.2 0.23 11.2 1.5 2.2 2 1 0 2 2 2 0 InsA N-terminal domain PriA_CRR PF18319.1 gi|307596165|ref|YP_003902482.1| - 1.2 9.2 5.6 6 6.9 0.5 2.4 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain Ribosomal_S27e PF01667.17 gi|307596166|ref|YP_003902483.1| - 2.2e-21 75.3 0.7 2.6e-21 75.1 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|307596166|ref|YP_003902483.1| - 0.00051 19.5 1.6 0.00064 19.2 1.6 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|307596166|ref|YP_003902483.1| - 0.0023 17.3 0.5 0.28 10.7 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|307596166|ref|YP_003902483.1| - 0.013 15.3 0.5 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit HypA PF01155.19 gi|307596166|ref|YP_003902483.1| - 0.038 14.0 0.1 0.046 13.8 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|307596166|ref|YP_003902483.1| - 0.054 13.6 0.2 0.094 12.8 0.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain HalOD2 PF18547.1 gi|307596166|ref|YP_003902483.1| - 0.077 12.9 1.1 3.5 7.6 0.0 2.2 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-BED PF02892.15 gi|307596166|ref|YP_003902483.1| - 0.11 12.5 0.2 10 6.3 0.0 2.1 2 0 0 2 2 2 0 BED zinc finger Desulfoferrod_N PF06397.12 gi|307596166|ref|YP_003902483.1| - 0.16 11.7 9.6 0.74 9.5 0.8 2.3 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_4 PF13717.6 gi|307596166|ref|YP_003902483.1| - 0.17 11.8 4.9 2.5 8.1 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|307596166|ref|YP_003902483.1| - 0.35 10.8 3.1 13 5.7 3.1 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.13 gi|307596166|ref|YP_003902483.1| - 0.36 10.6 5.5 3.5 7.4 1.1 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|307596166|ref|YP_003902483.1| - 0.47 10.2 3.0 1.2 8.9 0.7 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF3797 PF12677.7 gi|307596166|ref|YP_003902483.1| - 0.87 9.5 5.5 6.5 6.7 1.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) EIF_2_alpha PF07541.12 gi|307596167|ref|YP_003902484.1| - 6.6e-23 81.0 0.0 1.3e-22 80.1 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|307596167|ref|YP_003902484.1| - 3.4e-07 30.5 2.6 8.7e-07 29.2 0.0 2.6 3 0 0 3 3 3 1 S1 RNA binding domain Nop10p PF04135.12 gi|307596168|ref|YP_003902485.1| - 2.3e-22 78.7 2.6 3e-22 78.4 2.6 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|307596168|ref|YP_003902485.1| - 0.0001 22.1 0.7 0.00018 21.3 0.7 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L32p PF01783.23 gi|307596168|ref|YP_003902485.1| - 0.0051 17.0 1.2 0.0093 16.2 1.2 1.5 1 0 0 1 1 1 1 Ribosomal L32p protein family zinc-ribbons_6 PF07191.12 gi|307596168|ref|YP_003902485.1| - 0.01 15.8 0.4 0.015 15.3 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbons DUF1272 PF06906.11 gi|307596168|ref|YP_003902485.1| - 0.011 15.8 2.0 0.017 15.2 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF1258 PF06869.12 gi|307596168|ref|YP_003902485.1| - 0.039 13.4 0.2 0.048 13.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) TF_Zn_Ribbon PF08271.12 gi|307596168|ref|YP_003902485.1| - 0.042 13.4 3.3 3 7.4 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding NRDD PF13597.6 gi|307596168|ref|YP_003902485.1| - 0.048 12.4 1.1 0.062 12.1 1.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase RecR PF02132.15 gi|307596168|ref|YP_003902485.1| - 0.06 12.9 1.0 0.087 12.4 1.0 1.2 1 0 0 1 1 1 0 RecR protein HypA PF01155.19 gi|307596168|ref|YP_003902485.1| - 0.069 13.2 0.7 0.094 12.7 0.7 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|307596168|ref|YP_003902485.1| - 0.073 13.1 1.9 0.19 11.8 2.0 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|307596168|ref|YP_003902485.1| - 0.14 12.3 3.3 0.68 10.1 3.4 1.9 1 1 1 2 2 2 0 Zinc ribbon domain PolC_DP2 PF03833.13 gi|307596168|ref|YP_003902485.1| - 0.15 9.9 0.0 0.15 9.9 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-RING_7 PF02591.15 gi|307596168|ref|YP_003902485.1| - 0.18 12.0 7.8 12 6.2 0.8 3.2 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|307596168|ref|YP_003902485.1| - 0.38 10.2 8.9 1.5 8.3 7.3 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|307596168|ref|YP_003902485.1| - 0.4 10.5 7.2 1.9 8.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain STT3 PF02516.14 gi|307596169|ref|YP_003902486.1| - 1.8e-15 56.9 57.0 3.9e-15 55.7 57.0 1.6 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Aldose_epim PF01263.20 gi|307596170|ref|YP_003902487.1| - 1.4e-38 132.9 0.0 1.7e-38 132.6 0.0 1.1 1 0 0 1 1 1 1 Aldose 1-epimerase XPC-binding PF09280.11 gi|307596172|ref|YP_003902489.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 XPC-binding domain DUF5618 PF18498.1 gi|307596174|ref|YP_003902491.1| - 0.00066 19.9 0.0 0.0012 19.1 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF5618) PaREP1 PF05942.11 gi|307596174|ref|YP_003902491.1| - 0.0007 19.5 0.7 0.0021 18.0 0.7 1.7 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|307596174|ref|YP_003902491.1| - 0.044 13.9 2.1 0.22 11.7 2.1 2.2 1 1 0 1 1 1 0 HEPN domain TauE PF01925.19 gi|307596176|ref|YP_003902493.1| - 2.3e-35 122.4 33.4 2.3e-35 122.4 33.4 1.3 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE Thermopsin PF05317.11 gi|307596177|ref|YP_003902494.1| - 0.00087 18.8 10.0 0.12 11.9 5.1 2.9 1 1 1 2 2 2 2 Thermopsin DUF1435 PF07256.12 gi|307596178|ref|YP_003902495.1| - 0.22 11.6 6.8 0.086 12.9 2.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1435) S_4TM PF18159.1 gi|307596178|ref|YP_003902495.1| - 6.1 6.0 8.8 3.8 6.7 3.0 2.0 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain Phage_holin_2_4 PF16082.5 gi|307596178|ref|YP_003902495.1| - 9.7 6.0 8.4 2 8.2 3.3 2.3 2 1 1 3 3 3 0 Bacteriophage holin family, superfamily II-like TauE PF01925.19 gi|307596179|ref|YP_003902496.1| - 7.4e-41 140.3 33.1 9.2e-41 140.0 33.1 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Caveolin PF01146.17 gi|307596179|ref|YP_003902496.1| - 0.34 10.9 0.1 0.34 10.9 0.1 2.9 4 0 0 4 4 4 0 Caveolin TauE PF01925.19 gi|307596180|ref|YP_003902497.1| - 2.4e-41 141.9 30.8 2.4e-41 141.9 30.8 1.8 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE TauE PF01925.19 gi|307596181|ref|YP_003902498.1| - 8.7e-42 143.4 33.8 8.7e-42 143.4 33.8 2.6 2 1 0 2 2 2 1 Sulfite exporter TauE/SafE DUF1634 PF07843.11 gi|307596181|ref|YP_003902498.1| - 9.2e-24 83.5 13.6 9.2e-24 83.5 13.6 3.5 3 1 1 4 4 4 1 Protein of unknown function (DUF1634) AAA_32 PF13654.6 gi|307596182|ref|YP_003902499.1| - 0.018 13.9 0.1 0.025 13.4 0.1 1.1 1 0 0 1 1 1 0 AAA domain TrmB PF01978.19 gi|307596185|ref|YP_003902502.1| - 2.7e-05 24.0 0.7 0.22 11.4 0.2 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|307596185|ref|YP_003902502.1| - 0.15 11.7 0.0 0.37 10.5 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) FUR PF01475.19 gi|307596185|ref|YP_003902502.1| - 0.18 11.9 0.0 0.41 10.8 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family GATase_3 PF07685.14 gi|307596186|ref|YP_003902503.1| - 1.7e-27 96.3 0.1 2.9e-27 95.5 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|307596186|ref|YP_003902503.1| - 6.2e-15 55.5 2.0 2.1e-10 40.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain CbiA PF01656.23 gi|307596186|ref|YP_003902503.1| - 2.1e-14 53.7 0.0 3.7e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|307596186|ref|YP_003902503.1| - 0.0013 18.3 0.0 0.0029 17.1 0.0 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|307596186|ref|YP_003902503.1| - 0.01 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DJ-1_PfpI PF01965.24 gi|307596186|ref|YP_003902503.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 DJ-1/PfpI family VirC1 PF07015.11 gi|307596186|ref|YP_003902503.1| - 0.02 14.2 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein MipZ PF09140.11 gi|307596186|ref|YP_003902503.1| - 0.032 13.5 0.0 0.091 12.0 0.0 1.7 2 0 0 2 2 2 0 ATPase MipZ SNO PF01174.19 gi|307596186|ref|YP_003902503.1| - 0.085 12.7 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 SNO glutamine amidotransferase family IncF PF17626.2 gi|307596186|ref|YP_003902503.1| - 0.13 12.6 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Inclusion membrane protein F TP_methylase PF00590.20 gi|307596187|ref|YP_003902504.1| - 2.2e-38 132.3 0.0 2.8e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases SMC_ScpB PF04079.16 gi|307596188|ref|YP_003902505.1| - 0.0046 16.6 0.1 0.009 15.6 0.1 1.4 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_24 PF13412.6 gi|307596188|ref|YP_003902505.1| - 0.039 13.5 0.1 0.1 12.2 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|307596188|ref|YP_003902505.1| - 0.075 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Tubulin_3 PF14881.6 gi|307596189|ref|YP_003902506.1| - 0.092 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Tubulin domain NitrOD2 PF18550.1 gi|307596190|ref|YP_003902507.1| - 0.16 12.2 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Nitrososphaera output domain 2 DUF4953 PF16313.5 gi|307596190|ref|YP_003902507.1| - 0.18 11.0 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 Met-zincin ATP-sulfurylase PF01747.17 gi|307596191|ref|YP_003902508.1| - 3.6e-74 248.8 0.0 5.3e-74 248.3 0.0 1.3 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|307596191|ref|YP_003902508.1| - 2.4e-39 134.6 0.0 3.5e-39 134.0 0.0 1.2 1 0 0 1 1 1 1 PUA-like domain DUF309 PF03745.14 gi|307596191|ref|YP_003902508.1| - 0.013 15.1 0.0 0.11 12.2 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF309) KH_10 PF17905.1 gi|307596191|ref|YP_003902508.1| - 0.059 13.8 0.0 0.1 13.1 0.0 1.4 1 0 0 1 1 1 0 GLD-3 KH domain 5 FAD_binding_2 PF00890.24 gi|307596192|ref|YP_003902509.1| - 1.5e-13 50.6 0.0 3.1e-12 46.3 0.0 2.4 2 1 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|307596192|ref|YP_003902509.1| - 2.7e-08 33.9 0.1 5.7e-08 32.8 0.1 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|307596192|ref|YP_003902509.1| - 0.00015 21.5 0.1 0.012 15.2 0.1 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|307596192|ref|YP_003902509.1| - 0.037 14.3 0.4 0.18 12.0 0.1 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|307596192|ref|YP_003902509.1| - 0.043 12.7 0.1 0.062 12.1 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase GIDA PF01134.22 gi|307596192|ref|YP_003902509.1| - 0.045 12.8 0.3 0.31 10.1 0.2 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A APS-reductase_C PF12139.8 gi|307596193|ref|YP_003902510.1| - 9.3e-25 86.7 0.0 1.2e-24 86.3 0.0 1.2 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4_7 PF12838.7 gi|307596193|ref|YP_003902510.1| - 4.2e-12 46.5 10.6 7.7e-12 45.6 10.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307596193|ref|YP_003902510.1| - 3.3e-11 42.5 12.7 5.2e-06 26.1 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307596193|ref|YP_003902510.1| - 6.8e-11 42.2 9.6 1.2e-10 41.4 9.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307596193|ref|YP_003902510.1| - 6.6e-10 39.0 22.0 1.9e-07 31.1 13.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307596193|ref|YP_003902510.1| - 1.2e-08 34.7 13.4 6.3e-06 26.0 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|307596193|ref|YP_003902510.1| - 2.7e-07 31.4 3.8 0.0048 17.8 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|307596193|ref|YP_003902510.1| - 9.2e-06 25.7 7.1 0.014 15.5 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307596193|ref|YP_003902510.1| - 1e-05 25.7 13.9 0.00054 20.3 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307596193|ref|YP_003902510.1| - 4.1e-05 23.4 14.3 0.00072 19.5 4.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307596193|ref|YP_003902510.1| - 6.6e-05 23.6 17.2 0.01 16.7 4.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|307596193|ref|YP_003902510.1| - 0.00019 21.8 11.4 0.088 13.3 3.5 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596193|ref|YP_003902510.1| - 0.00025 21.5 13.3 0.011 16.2 13.3 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|307596193|ref|YP_003902510.1| - 0.0015 18.7 9.6 0.24 11.6 3.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307596193|ref|YP_003902510.1| - 0.021 15.4 11.3 0.07 13.7 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|307596193|ref|YP_003902510.1| - 0.11 13.3 8.3 0.27 12.1 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307596193|ref|YP_003902510.1| - 0.13 13.1 4.7 0.8 10.5 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Nitrate_red_gam PF02665.14 gi|307596194|ref|YP_003902511.1| - 2.4 7.6 19.6 0.1 12.1 3.5 2.9 2 1 1 3 3 3 0 Nitrate reductase gamma subunit DUF2070 PF09843.9 gi|307596194|ref|YP_003902511.1| - 10 4.3 6.8 5.4 5.2 5.1 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) ANAPC4_WD40 PF12894.7 gi|307596195|ref|YP_003902512.1| - 0.027 14.8 0.0 1.9 8.9 0.0 2.5 1 1 1 2 2 2 0 Anaphase-promoting complex subunit 4 WD40 domain TrmB PF01978.19 gi|307596195|ref|YP_003902512.1| - 0.098 12.6 0.6 0.28 11.1 0.6 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB UPF0113_N PF17833.1 gi|307596195|ref|YP_003902512.1| - 0.25 11.9 2.1 2.8 8.6 0.0 2.5 2 1 0 2 2 2 0 UPF0113 Pre-PUA domain Fer4_8 PF13183.6 gi|307596196|ref|YP_003902513.1| - 3.3e-12 46.7 2.0 7.8e-12 45.5 2.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307596196|ref|YP_003902513.1| - 1.7e-09 38.2 18.3 1.2e-07 32.2 8.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307596196|ref|YP_003902513.1| - 3.7e-09 36.6 1.8 0.00094 19.3 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596196|ref|YP_003902513.1| - 7.3e-09 36.0 1.6 2.1e-08 34.6 1.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307596196|ref|YP_003902513.1| - 5.7e-08 33.6 6.0 1.5e-06 29.1 4.9 2.7 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|307596196|ref|YP_003902513.1| - 7.3e-08 32.4 8.0 8e-07 29.1 9.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307596196|ref|YP_003902513.1| - 3.4e-07 30.0 12.9 0.0015 18.5 3.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain CCG PF02754.16 gi|307596196|ref|YP_003902513.1| - 3.7e-06 27.1 0.1 6.7e-05 23.0 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4 PF00037.27 gi|307596196|ref|YP_003902513.1| - 4.3e-06 26.3 12.7 0.00077 19.2 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|307596196|ref|YP_003902513.1| - 5.1e-06 26.7 0.8 0.029 14.6 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307596196|ref|YP_003902513.1| - 1.6e-05 24.9 4.2 0.034 14.3 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307596196|ref|YP_003902513.1| - 3.4e-05 24.0 10.5 0.0077 16.7 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307596196|ref|YP_003902513.1| - 0.00023 21.1 18.2 0.00037 20.4 3.8 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307596196|ref|YP_003902513.1| - 0.0037 18.1 16.1 0.034 15.1 5.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|307596196|ref|YP_003902513.1| - 0.045 14.5 2.3 0.32 11.8 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|307596196|ref|YP_003902513.1| - 0.21 12.4 9.5 0.29 12.0 0.3 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Nitrate_red_gam PF02665.14 gi|307596197|ref|YP_003902514.1| - 4.3e-30 104.9 25.5 1.3e-28 100.1 13.5 2.6 2 1 0 2 2 2 2 Nitrate reductase gamma subunit ATP1G1_PLM_MAT8 PF02038.16 gi|307596197|ref|YP_003902514.1| - 5.4 6.5 12.8 10 5.6 0.7 3.3 3 0 0 3 3 3 0 ATP1G1/PLM/MAT8 family Sigma70_r1_1 PF03979.14 gi|307596198|ref|YP_003902515.1| - 0.00015 21.8 0.0 0.0003 20.8 0.0 1.6 1 1 0 1 1 1 1 Sigma-70 factor, region 1.1 DUF1652 PF07865.11 gi|307596198|ref|YP_003902515.1| - 0.03 14.1 0.3 2.1 8.2 0.0 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF1652) Pyr_redox_2 PF07992.14 gi|307596199|ref|YP_003902516.1| - 1.4e-19 70.5 0.0 1.6e-09 37.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307596199|ref|YP_003902516.1| - 0.0028 18.2 0.4 7 7.3 0.0 3.3 3 1 1 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|307596199|ref|YP_003902516.1| - 0.0031 17.5 0.0 0.48 10.4 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding DUF1344 PF07076.11 gi|307596199|ref|YP_003902516.1| - 0.035 14.0 0.4 0.22 11.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1344) DUF1641 PF07849.11 gi|307596200|ref|YP_003902517.1| - 8.2e-06 25.6 0.5 1.8e-05 24.5 0.3 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) NIR_SIR PF01077.22 gi|307596201|ref|YP_003902518.1| - 4.3e-20 71.8 0.0 6.3e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|307596201|ref|YP_003902518.1| - 1.1e-05 25.2 0.0 1.9e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain NIR_SIR PF01077.22 gi|307596202|ref|YP_003902519.1| - 3.3e-33 114.4 0.0 5.5e-33 113.7 0.0 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|307596202|ref|YP_003902519.1| - 3.1e-07 30.1 0.0 5.4e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.7 gi|307596202|ref|YP_003902519.1| - 0.00013 22.4 1.4 0.00045 20.7 1.4 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307596202|ref|YP_003902519.1| - 0.00024 21.8 2.5 0.12 13.1 0.0 3.0 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4 PF00037.27 gi|307596202|ref|YP_003902519.1| - 0.0011 18.7 10.9 0.023 14.5 4.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|307596202|ref|YP_003902519.1| - 0.0025 18.3 9.7 0.017 15.6 0.5 2.7 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_9 PF13187.6 gi|307596202|ref|YP_003902519.1| - 0.015 15.5 1.2 0.045 13.9 1.2 1.8 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307596202|ref|YP_003902519.1| - 0.034 14.6 0.3 0.19 12.2 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307596202|ref|YP_003902519.1| - 0.1 12.7 11.2 0.065 13.3 4.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307596202|ref|YP_003902519.1| - 3.2 7.9 9.6 0.3 11.2 3.6 2.3 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307596202|ref|YP_003902519.1| - 9.4 6.5 12.6 0.72 10.0 4.4 2.4 2 1 0 3 3 3 0 4Fe-4S dicluster domain Yop-YscD_ppl PF16693.5 gi|307596203|ref|YP_003902520.1| - 0.09 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Inner membrane component of T3SS, periplasmic domain DsrC PF04358.13 gi|307596204|ref|YP_003902521.1| - 3e-34 117.8 0.0 3.4e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein HEPN PF05168.14 gi|307596205|ref|YP_003902522.1| - 1.4e-23 83.2 0.2 1.6e-23 83.1 0.2 1.0 1 0 0 1 1 1 1 HEPN domain MIT PF04212.18 gi|307596205|ref|YP_003902522.1| - 0.029 14.4 0.1 0.054 13.6 0.1 1.4 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain TPR_10 PF13374.6 gi|307596205|ref|YP_003902522.1| - 0.073 13.0 0.4 1.5 8.8 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|307596206|ref|YP_003902523.1| - 4.5e-09 36.5 0.1 7e-09 35.9 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|307596206|ref|YP_003902523.1| - 2.3e-07 30.8 0.0 3.4e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|307596206|ref|YP_003902523.1| - 0.017 14.9 0.0 0.11 12.4 0.0 1.9 2 0 0 2 2 2 0 Putative nucleotidyltransferase DUF294 RlaP PF10127.9 gi|307596206|ref|YP_003902523.1| - 0.068 12.7 0.3 0.13 11.9 0.0 1.6 2 1 0 2 2 2 0 RNA repair pathway DNA polymerase beta family HTH_36 PF13730.6 gi|307596207|ref|YP_003902524.1| - 0.002 18.1 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Cdc6_C PF09079.11 gi|307596207|ref|YP_003902524.1| - 0.03 14.3 0.1 0.051 13.6 0.1 1.6 1 1 0 1 1 1 0 CDC6, C terminal winged helix domain DUF4364 PF14277.6 gi|307596207|ref|YP_003902524.1| - 0.054 13.2 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Aldo_ket_red PF00248.21 gi|307596208|ref|YP_003902525.1| - 2.1e-59 201.1 0.0 3.6e-57 193.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DUF1664 PF07889.12 gi|307596210|ref|YP_003902527.1| - 0.0076 16.3 0.3 0.0088 16.1 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) HSBP1 PF06825.12 gi|307596210|ref|YP_003902527.1| - 0.058 13.3 0.0 0.067 13.1 0.0 1.2 1 0 0 1 1 1 0 Heat shock factor binding protein 1 NDUFB11 PF17250.2 gi|307596210|ref|YP_003902527.1| - 0.11 13.1 1.1 0.12 13.0 1.1 1.0 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase 11 kDa subunit vATP-synt_AC39 PF01992.16 gi|307596211|ref|YP_003902528.1| - 4.6e-31 108.6 0.1 5.3e-31 108.4 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit hnRNP_Q_AcD PF18360.1 gi|307596211|ref|YP_003902528.1| - 0.098 12.6 0.4 2.2 8.3 0.0 2.8 3 0 0 3 3 3 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain Apolipoprotein PF01442.18 gi|307596212|ref|YP_003902529.1| - 0.00021 21.2 2.9 0.0003 20.7 2.8 1.2 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain V-ATPase_G_2 PF16999.5 gi|307596212|ref|YP_003902529.1| - 0.00078 19.8 4.1 0.0021 18.5 4.0 1.6 1 1 1 2 2 2 1 Vacuolar (H+)-ATPase G subunit ApoLp-III PF07464.11 gi|307596212|ref|YP_003902529.1| - 0.00091 19.3 5.8 0.012 15.7 5.8 2.0 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) DUF3510 PF12022.8 gi|307596212|ref|YP_003902529.1| - 0.0017 18.7 1.1 0.003 18.0 0.5 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF3510) Fib_alpha PF08702.10 gi|307596212|ref|YP_003902529.1| - 0.0025 18.0 9.3 0.012 15.8 6.3 2.0 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family Sld5 PF05916.11 gi|307596212|ref|YP_003902529.1| - 0.0031 17.9 1.2 0.0037 17.7 1.2 1.4 1 1 0 1 1 1 1 GINS complex protein Col_cuticle_N PF01484.17 gi|307596212|ref|YP_003902529.1| - 0.0074 16.3 0.5 0.053 13.6 0.1 2.2 2 0 0 2 2 2 1 Nematode cuticle collagen N-terminal domain Drf_FH3 PF06367.16 gi|307596212|ref|YP_003902529.1| - 0.011 15.4 2.2 0.011 15.4 2.2 1.4 1 1 0 1 1 1 0 Diaphanous FH3 Domain Phasin PF05597.11 gi|307596212|ref|YP_003902529.1| - 0.014 15.4 7.4 0.035 14.1 2.9 2.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF2884 PF11101.8 gi|307596212|ref|YP_003902529.1| - 0.015 14.9 1.7 0.2 11.2 1.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) DUF2451 PF10474.9 gi|307596212|ref|YP_003902529.1| - 0.016 15.0 1.8 0.046 13.5 1.8 1.8 1 1 0 1 1 1 0 Protein of unknown function C-terminus (DUF2451) Mer2 PF09074.10 gi|307596212|ref|YP_003902529.1| - 0.017 15.0 5.1 0.02 14.7 5.1 1.1 1 0 0 1 1 1 0 Mer2 REF PF05755.12 gi|307596212|ref|YP_003902529.1| - 0.018 14.9 2.6 0.023 14.5 1.7 1.4 1 1 0 1 1 1 0 Rubber elongation factor protein (REF) ARGLU PF15346.6 gi|307596212|ref|YP_003902529.1| - 0.02 14.8 13.0 0.026 14.4 13.0 1.2 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 Lipoprotein_7 PF01540.16 gi|307596212|ref|YP_003902529.1| - 0.023 14.0 7.7 0.029 13.7 7.7 1.1 1 0 0 1 1 1 0 Adhesin lipoprotein Spore_III_AB PF09548.10 gi|307596212|ref|YP_003902529.1| - 0.054 13.6 0.8 0.07 13.2 0.8 1.3 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) HSCB_C PF07743.13 gi|307596212|ref|YP_003902529.1| - 0.056 13.9 6.1 36 5.0 6.1 2.6 1 1 0 1 1 1 0 HSCB C-terminal oligomerisation domain DUF148 PF02520.17 gi|307596212|ref|YP_003902529.1| - 0.056 13.5 6.1 0.26 11.4 2.4 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF148 OmpH PF03938.14 gi|307596212|ref|YP_003902529.1| - 0.067 13.5 6.0 0.12 12.7 6.0 1.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Meckelin PF09773.9 gi|307596212|ref|YP_003902529.1| - 0.071 11.2 0.8 0.087 10.9 0.8 1.0 1 0 0 1 1 1 0 Meckelin (Transmembrane protein 67) Leuk-A4-hydro_C PF09127.11 gi|307596212|ref|YP_003902529.1| - 0.073 13.2 0.8 0.35 10.9 0.1 1.9 1 1 1 2 2 2 0 Leukotriene A4 hydrolase, C-terminal DUF445 PF04286.12 gi|307596212|ref|YP_003902529.1| - 0.075 12.8 7.2 0.14 11.9 7.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF445) Phage_Gp19 PF09355.10 gi|307596212|ref|YP_003902529.1| - 0.08 13.4 3.1 0.11 13.0 0.3 1.9 1 1 1 2 2 2 0 Phage protein Gp19/Gp15/Gp42 Occludin_ELL PF07303.13 gi|307596212|ref|YP_003902529.1| - 0.085 13.6 5.2 0.13 13.0 5.2 1.3 1 0 0 1 1 1 0 Occludin homology domain Taeniidae_ag PF05596.11 gi|307596212|ref|YP_003902529.1| - 0.087 12.8 5.2 0.27 11.2 0.6 2.6 2 1 1 3 3 3 0 Taeniidae antigen Baculo_PEP_C PF04513.12 gi|307596212|ref|YP_003902529.1| - 0.095 12.7 0.2 0.21 11.6 0.2 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Z1 PF10593.9 gi|307596212|ref|YP_003902529.1| - 0.1 12.1 2.0 0.12 11.9 2.0 1.2 1 0 0 1 1 1 0 Z1 domain CBFD_NFYB_HMF PF00808.23 gi|307596212|ref|YP_003902529.1| - 0.15 12.4 1.7 0.51 10.7 0.3 2.2 1 1 0 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Prominin PF05478.11 gi|307596212|ref|YP_003902529.1| - 0.16 9.9 3.7 0.22 9.4 3.7 1.3 1 0 0 1 1 1 0 Prominin DUF1542 PF07564.11 gi|307596212|ref|YP_003902529.1| - 0.21 11.7 6.2 4.5 7.5 0.6 2.3 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1542) UTP15_C PF09384.10 gi|307596212|ref|YP_003902529.1| - 0.26 10.9 4.7 3.7 7.2 0.6 2.1 1 1 1 2 2 2 0 UTP15 C terminal V-ATPase_G PF03179.15 gi|307596212|ref|YP_003902529.1| - 0.28 11.7 9.0 0.38 11.3 8.1 1.6 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit RPN7 PF10602.9 gi|307596212|ref|YP_003902529.1| - 0.28 10.9 6.3 2.9 7.6 0.6 2.1 2 0 0 2 2 2 0 26S proteasome subunit RPN7 RuvA_C PF07499.13 gi|307596212|ref|YP_003902529.1| - 0.29 11.6 3.4 15 6.2 0.4 2.3 2 0 0 2 2 2 0 RuvA, C-terminal domain Phe_tRNA-synt_N PF02912.18 gi|307596212|ref|YP_003902529.1| - 0.32 11.0 4.0 1.6 8.7 1.2 2.5 1 1 1 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain cwf21 PF08312.12 gi|307596212|ref|YP_003902529.1| - 0.32 11.2 13.7 0.088 13.0 3.5 3.2 1 1 1 2 2 2 0 cwf21 domain Ribosomal_S13 PF00416.22 gi|307596212|ref|YP_003902529.1| - 0.39 11.1 5.6 0.34 11.3 3.9 1.7 1 1 1 2 2 2 0 Ribosomal protein S13/S18 RICH PF05062.12 gi|307596212|ref|YP_003902529.1| - 0.6 10.5 9.3 12 6.3 9.3 2.8 1 1 0 1 1 1 0 RICH domain DUF826 PF05696.11 gi|307596212|ref|YP_003902529.1| - 0.74 9.9 7.4 0.42 10.7 0.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF826) PdaC PF13739.6 gi|307596212|ref|YP_003902529.1| - 0.88 10.6 6.9 7.3 7.7 5.3 2.2 1 1 1 2 2 2 0 Deacetylase PdaC YtxH PF12732.7 gi|307596212|ref|YP_003902529.1| - 1.3 9.6 7.3 37 4.9 7.3 2.4 1 1 0 1 1 1 0 YtxH-like protein Spore_GerAC PF05504.11 gi|307596212|ref|YP_003902529.1| - 1.4 9.1 10.6 34 4.6 10.6 2.1 1 1 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal dCache_2 PF08269.11 gi|307596212|ref|YP_003902529.1| - 1.6 7.8 9.8 0.47 9.6 5.3 1.7 1 1 1 2 2 2 0 Cache domain Mt_ATP-synt_D PF05873.12 gi|307596212|ref|YP_003902529.1| - 1.8 8.4 9.8 2.4 8.0 1.9 2.1 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) Spore_II_R PF09551.10 gi|307596212|ref|YP_003902529.1| - 1.8 9.0 6.4 2.8 8.4 6.4 1.4 1 1 0 1 1 1 0 Stage II sporulation protein R (spore_II_R) FeoB_Cyto PF17910.1 gi|307596212|ref|YP_003902529.1| - 2 9.0 10.0 6.6 7.3 4.3 2.2 1 1 1 2 2 2 0 FeoB cytosolic helical domain LMBR1 PF04791.16 gi|307596212|ref|YP_003902529.1| - 4.2 6.2 4.9 4.5 6.1 4.9 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein PsiE PF06146.12 gi|307596213|ref|YP_003902530.1| - 5e-11 42.8 7.9 5e-11 42.8 7.9 1.8 2 1 0 2 2 2 1 Phosphate-starvation-inducible E TraE PF05309.11 gi|307596213|ref|YP_003902530.1| - 2.3 7.6 10.7 0.14 11.5 2.3 2.2 2 1 0 2 2 2 0 TraE protein NrsF PF06532.11 gi|307596213|ref|YP_003902530.1| - 2.7 7.6 14.9 0.18 11.5 8.1 1.9 1 1 1 2 2 2 0 Negative regulator of sigma F AsnC_trans_reg2 PF17805.1 gi|307596214|ref|YP_003902531.1| - 1.6e-36 124.3 0.2 4.5e-17 62.0 0.1 2.4 2 0 0 2 2 2 2 AsnC-like ligand binding domain Vault_4 PF17796.1 gi|307596215|ref|YP_003902532.1| - 0.097 12.8 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Major Vault Protein repeat domain Methyltr_RsmB-F PF01189.17 gi|307596216|ref|YP_003902533.1| - 1e-38 133.0 0.0 7.6e-38 130.2 0.0 1.9 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|307596216|ref|YP_003902533.1| - 3.6e-17 62.1 1.1 8.3e-17 60.9 1.1 1.6 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.6 gi|307596216|ref|YP_003902533.1| - 9.4e-05 22.2 0.0 0.00023 21.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|307596216|ref|YP_003902533.1| - 0.00077 19.6 0.0 0.0014 18.7 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase UPF0113 PF03657.13 gi|307596216|ref|YP_003902533.1| - 0.0034 17.6 0.1 0.0072 16.6 0.1 1.5 1 0 0 1 1 1 1 UPF0113 PUA domain Methyltr_RsmF_N PF17125.5 gi|307596216|ref|YP_003902533.1| - 0.013 16.0 0.0 0.087 13.3 0.0 2.1 2 0 0 2 2 2 0 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_11 PF08241.12 gi|307596216|ref|YP_003902533.1| - 0.019 15.6 0.0 0.069 13.8 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307596216|ref|YP_003902533.1| - 0.066 13.9 0.0 4.6 8.0 0.0 2.8 2 1 0 2 2 2 0 Methyltransferase domain tRNA_edit PF04073.15 gi|307596217|ref|YP_003902534.1| - 1.2e-27 96.4 0.1 1.4e-27 96.2 0.1 1.0 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain GHMP_kinases_N PF00288.26 gi|307596218|ref|YP_003902535.1| - 7.9e-14 51.6 0.2 7.9e-14 51.6 0.2 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|307596218|ref|YP_003902535.1| - 9.8e-13 48.3 0.1 3.3e-12 46.6 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|307596218|ref|YP_003902535.1| - 1.5e-10 40.4 0.0 2.7e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GalP_UDP_tr_C PF02744.17 gi|307596219|ref|YP_003902536.1| - 1.6e-18 67.0 0.0 2.4e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain GalP_UDP_transf PF01087.22 gi|307596219|ref|YP_003902536.1| - 4.8e-17 63.0 0.0 1.9e-16 61.0 0.0 1.9 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain DUF4921 PF16268.5 gi|307596219|ref|YP_003902536.1| - 7.9e-05 21.6 0.0 0.00011 21.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4921) DcpS_C PF11969.8 gi|307596219|ref|YP_003902536.1| - 0.0026 18.2 1.1 0.025 15.1 0.6 2.1 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.23 gi|307596219|ref|YP_003902536.1| - 0.0028 18.3 0.1 0.17 12.7 0.1 2.2 2 0 0 2 2 2 1 HIT domain DUF4931 PF16285.5 gi|307596219|ref|YP_003902536.1| - 0.0076 15.6 0.2 0.024 13.9 0.0 1.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4931) Pyr_redox_2 PF07992.14 gi|307596220|ref|YP_003902537.1| - 7e-49 166.6 0.2 8.8e-49 166.3 0.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|307596220|ref|YP_003902537.1| - 7.1e-29 101.0 2.2 8.6e-23 81.0 0.0 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307596220|ref|YP_003902537.1| - 7.3e-18 64.9 1.8 2.7e-13 50.3 0.0 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|307596220|ref|YP_003902537.1| - 2.2e-09 36.9 1.5 9.2e-07 28.3 0.1 3.1 3 0 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 gi|307596220|ref|YP_003902537.1| - 3.2e-09 36.7 1.8 1.1e-07 31.6 0.1 2.5 2 1 1 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|307596220|ref|YP_003902537.1| - 3.5e-09 36.3 8.6 2e-05 23.9 1.1 4.1 4 1 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|307596220|ref|YP_003902537.1| - 5.4e-09 35.3 1.8 9.1e-05 21.3 0.5 3.9 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|307596220|ref|YP_003902537.1| - 6.9e-08 32.1 1.0 0.00062 19.1 0.8 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|307596220|ref|YP_003902537.1| - 1.6e-06 28.2 1.7 0.0031 17.7 0.4 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|307596220|ref|YP_003902537.1| - 4.2e-06 26.1 0.0 0.00023 20.4 0.0 2.4 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|307596220|ref|YP_003902537.1| - 7.5e-06 25.4 1.4 0.0012 18.2 0.3 2.3 2 0 0 2 2 2 2 Thi4 family NAD_binding_9 PF13454.6 gi|307596220|ref|YP_003902537.1| - 8.3e-05 22.6 0.8 0.19 11.7 0.0 3.2 3 0 0 3 3 3 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|307596220|ref|YP_003902537.1| - 8.5e-05 23.0 0.1 0.071 13.6 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding DAO PF01266.24 gi|307596220|ref|YP_003902537.1| - 0.0011 18.7 12.1 0.0028 17.3 3.7 3.2 3 1 1 4 4 4 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|307596220|ref|YP_003902537.1| - 0.0017 17.5 0.7 0.17 10.9 0.3 2.7 2 1 1 3 3 3 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|307596220|ref|YP_003902537.1| - 0.003 16.9 0.5 0.23 10.8 0.3 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain PALP PF00291.25 gi|307596220|ref|YP_003902537.1| - 0.038 13.4 0.4 1.7 8.0 0.1 2.6 3 0 0 3 3 3 0 Pyridoxal-phosphate dependent enzyme DUF5510 PF17629.2 gi|307596220|ref|YP_003902537.1| - 0.13 12.2 0.8 0.37 10.8 0.1 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5510) Trp_halogenase PF04820.14 gi|307596220|ref|YP_003902537.1| - 0.56 9.0 4.6 1.2 7.9 1.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase HTH_DeoR PF08220.12 gi|307596221|ref|YP_003902538.1| - 0.0084 15.8 0.2 0.062 13.1 0.0 2.4 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|307596221|ref|YP_003902538.1| - 0.0087 16.0 0.0 0.021 14.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|307596221|ref|YP_003902538.1| - 0.023 14.7 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_micro PF17007.5 gi|307596221|ref|YP_003902538.1| - 0.024 13.5 0.1 0.034 13.0 0.1 1.1 1 0 0 1 1 1 0 HTH-like DUF1641 PF07849.11 gi|307596222|ref|YP_003902539.1| - 0.0031 17.4 1.1 0.0031 17.4 1.1 3.9 5 0 0 5 5 5 2 Protein of unknown function (DUF1641) Mod_r PF07200.13 gi|307596222|ref|YP_003902539.1| - 0.41 10.7 3.8 6.6 6.8 0.1 3.0 3 1 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein HEAT_2 PF13646.6 gi|307596222|ref|YP_003902539.1| - 0.56 10.6 3.3 6.1 7.3 0.4 3.1 2 1 0 2 2 2 0 HEAT repeats Pyr_redox_2 PF07992.14 gi|307596223|ref|YP_003902540.1| - 3.9e-18 65.7 0.0 2e-16 60.1 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|307596223|ref|YP_003902540.1| - 1.9e-05 24.7 0.0 0.15 12.1 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|307596223|ref|YP_003902540.1| - 0.00011 22.7 0.0 0.2 12.2 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|307596223|ref|YP_003902540.1| - 0.00021 21.5 0.0 0.00057 20.1 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|307596223|ref|YP_003902540.1| - 0.00035 19.4 0.0 0.0054 15.5 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|307596223|ref|YP_003902540.1| - 0.0019 17.3 0.0 0.084 11.9 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.24 gi|307596223|ref|YP_003902540.1| - 0.0031 17.2 0.0 0.15 11.7 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|307596223|ref|YP_003902540.1| - 0.013 14.7 0.0 0.025 13.8 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_7 PF13241.6 gi|307596223|ref|YP_003902540.1| - 0.023 15.1 0.0 0.041 14.3 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|307596223|ref|YP_003902540.1| - 0.046 14.0 0.0 0.096 13.0 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain DUF1188 PF06690.11 gi|307596223|ref|YP_003902540.1| - 0.078 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) Pyr_redox_3 PF13738.6 gi|307596223|ref|YP_003902540.1| - 0.088 12.0 0.0 0.33 10.2 0.0 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|307596223|ref|YP_003902540.1| - 0.089 11.9 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.14 gi|307596223|ref|YP_003902540.1| - 0.15 10.9 0.0 0.36 9.6 0.0 1.6 2 0 0 2 2 2 0 Tryptophan halogenase TusA PF01206.17 gi|307596224|ref|YP_003902541.1| - 4.6e-19 68.0 0.0 5.3e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|307596224|ref|YP_003902541.1| - 0.1 12.5 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|307596225|ref|YP_003902542.1| - 1.2e-15 57.7 1.2 3.1e-07 30.4 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|307596225|ref|YP_003902542.1| - 2.2e-09 37.7 0.0 2.7e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.10 gi|307596225|ref|YP_003902542.1| - 0.051 13.4 3.4 0.53 10.1 0.1 2.8 3 0 0 3 3 3 0 Anti-repressor SinI AA_permease PF00324.21 gi|307596226|ref|YP_003902543.1| - 4.4e-30 104.7 49.2 5.6e-30 104.4 49.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|307596226|ref|YP_003902543.1| - 5.1e-15 55.2 59.7 6.4e-15 54.9 59.7 1.1 1 0 0 1 1 1 1 Amino acid permease Aminotran_3 PF00202.21 gi|307596227|ref|YP_003902544.1| - 7.7e-108 360.7 0.0 9.3e-108 360.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|307596227|ref|YP_003902544.1| - 0.065 12.4 0.0 0.2 10.8 0.0 1.7 1 1 0 1 1 1 0 Aminotransferase class I and II Fe-ADH_2 PF13685.6 gi|307596228|ref|YP_003902545.1| - 1.3e-50 172.5 0.0 2.5e-50 171.5 0.0 1.4 1 1 1 2 2 2 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|307596228|ref|YP_003902545.1| - 2.8e-26 92.2 0.4 1.6e-24 86.4 0.4 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|307596228|ref|YP_003902545.1| - 2.3e-12 46.7 0.1 5.5e-12 45.4 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF2526 PF10735.9 gi|307596229|ref|YP_003902546.1| - 0.014 15.5 0.2 0.022 14.9 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2526) IBB PF01749.20 gi|307596229|ref|YP_003902546.1| - 0.016 15.7 0.2 0.018 15.4 0.2 1.1 1 0 0 1 1 1 0 Importin beta binding domain BTHB PF18410.1 gi|307596229|ref|YP_003902546.1| - 0.046 13.5 0.9 0.052 13.4 0.9 1.2 1 0 0 1 1 1 0 Basic tilted helix bundle domain DUF4974 PF16344.5 gi|307596230|ref|YP_003902547.1| - 0.069 13.2 0.0 0.14 12.2 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4974) DUF4439 PF14530.6 gi|307596231|ref|YP_003902548.1| - 0.1 13.3 0.0 0.12 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4439) Pyr_redox_2 PF07992.14 gi|307596232|ref|YP_003902549.1| - 1e-13 51.2 2.0 0.00025 20.4 0.2 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|307596232|ref|YP_003902549.1| - 2e-09 36.7 0.0 2.3e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|307596232|ref|YP_003902549.1| - 8.8e-09 34.9 2.0 0.0013 17.9 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|307596232|ref|YP_003902549.1| - 4e-08 33.2 0.6 0.00024 20.8 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|307596232|ref|YP_003902549.1| - 2.6e-07 30.2 0.7 0.029 13.6 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|307596232|ref|YP_003902549.1| - 2e-06 27.2 0.1 9.5e-05 21.6 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|307596232|ref|YP_003902549.1| - 5.4e-05 23.3 0.0 0.00048 20.3 0.0 2.6 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|307596232|ref|YP_003902549.1| - 6.7e-05 22.2 0.3 0.00039 19.7 0.1 2.3 3 0 0 3 3 3 1 Thi4 family FAD_binding_2 PF00890.24 gi|307596232|ref|YP_003902549.1| - 9.9e-05 21.6 2.4 0.00062 19.0 0.1 2.7 3 0 0 3 3 3 1 FAD binding domain Pyr_redox PF00070.27 gi|307596232|ref|YP_003902549.1| - 0.0012 19.3 0.1 3.4 8.3 0.0 3.5 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|307596232|ref|YP_003902549.1| - 0.0017 18.4 0.0 0.0065 16.5 0.0 2.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|307596232|ref|YP_003902549.1| - 0.0022 17.3 0.0 0.0045 16.3 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|307596232|ref|YP_003902549.1| - 0.03 13.7 0.4 0.047 13.0 0.4 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|307596232|ref|YP_003902549.1| - 0.037 12.9 0.0 0.057 12.3 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Adenylsucc_synt PF00709.21 gi|307596233|ref|YP_003902550.1| - 3.5e-72 243.6 1.0 2.6e-36 125.5 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Lyase_1 PF00206.20 gi|307596234|ref|YP_003902551.1| - 6.6e-39 134.1 0.0 9.1e-39 133.7 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|307596234|ref|YP_003902551.1| - 1.4e-31 108.9 0.0 3e-31 107.9 0.0 1.6 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF5082 PF16888.5 gi|307596234|ref|YP_003902551.1| - 0.063 13.5 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) MazE_antitoxin PF04014.18 gi|307596237|ref|YP_003902554.1| - 1.5e-14 53.5 2.9 1.6e-14 53.4 0.5 1.9 1 1 1 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|307596237|ref|YP_003902554.1| - 7.3e-06 26.3 0.2 1e-05 25.9 0.2 1.3 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin AbrB-like PF14250.6 gi|307596237|ref|YP_003902554.1| - 0.0075 16.3 0.2 0.023 14.8 0.1 1.7 2 0 0 2 2 2 1 AbrB-like transcriptional regulator DUF1905 PF08922.11 gi|307596237|ref|YP_003902554.1| - 0.048 13.7 0.0 0.087 12.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) PIN PF01850.21 gi|307596238|ref|YP_003902555.1| - 4e-07 30.6 0.6 4.2e-07 30.5 0.6 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|307596238|ref|YP_003902555.1| - 0.023 15.5 0.1 0.024 15.4 0.1 1.0 1 0 0 1 1 1 0 PIN domain DUF2299 PF10061.9 gi|307596238|ref|YP_003902555.1| - 0.065 13.0 0.2 0.067 12.9 0.2 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) PIN PF01850.21 gi|307596239|ref|YP_003902556.1| - 0.00026 21.5 0.2 0.00031 21.2 0.2 1.1 1 0 0 1 1 1 1 PIN domain ADC PF06314.11 gi|307596240|ref|YP_003902557.1| - 1.3e-44 152.6 0.0 1.5e-44 152.3 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) CCG PF02754.16 gi|307596241|ref|YP_003902558.1| - 7.4e-06 26.1 0.0 0.00015 21.9 0.0 2.3 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_8 PF13183.6 gi|307596242|ref|YP_003902559.1| - 7.7e-11 42.3 2.9 9.8e-11 41.9 2.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596242|ref|YP_003902559.1| - 1.8e-08 34.8 3.9 2.3e-08 34.5 3.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307596242|ref|YP_003902559.1| - 3e-07 30.4 3.0 0.0011 19.0 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307596242|ref|YP_003902559.1| - 2.5e-06 27.9 9.1 2.6e-05 24.7 9.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307596242|ref|YP_003902559.1| - 4.1e-06 26.9 3.2 0.0066 16.6 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|307596242|ref|YP_003902559.1| - 0.0012 19.7 4.7 0.0025 18.7 4.7 1.5 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|307596242|ref|YP_003902559.1| - 0.0024 17.6 3.7 0.017 14.9 0.2 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|307596242|ref|YP_003902559.1| - 0.0025 17.9 5.7 0.41 10.8 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|307596242|ref|YP_003902559.1| - 0.0059 16.8 2.4 0.089 13.0 0.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307596242|ref|YP_003902559.1| - 0.0078 16.0 12.8 0.036 13.9 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Ank_4 PF13637.6 gi|307596242|ref|YP_003902559.1| - 0.038 14.6 0.0 0.069 13.8 0.0 1.4 1 0 0 1 1 1 0 Ankyrin repeats (many copies) Fer4_22 PF17179.4 gi|307596242|ref|YP_003902559.1| - 0.049 14.5 5.7 1.3 9.9 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307596242|ref|YP_003902559.1| - 0.34 11.1 11.7 0.51 10.5 2.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|307596242|ref|YP_003902559.1| - 1.2 9.8 11.3 1.5 9.5 2.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307596242|ref|YP_003902559.1| - 2.1 9.5 16.3 2.2 9.4 5.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|307596242|ref|YP_003902559.1| - 7.1 6.9 12.2 13 6.0 1.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain FAD-oxidase_C PF02913.19 gi|307596243|ref|YP_003902560.1| - 1.6e-42 145.9 0.0 2.3e-42 145.3 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|307596243|ref|YP_003902560.1| - 6.4e-37 126.4 0.7 1.4e-36 125.3 0.7 1.6 1 0 0 1 1 1 1 FAD binding domain MazE_antitoxin PF04014.18 gi|307596244|ref|YP_003902561.1| - 1.1e-06 28.4 0.3 0.00032 20.5 0.0 2.6 3 0 0 3 3 3 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|307596244|ref|YP_003902561.1| - 0.1 13.1 0.1 0.6 10.6 0.0 2.1 2 1 0 2 2 2 0 prlF antitoxin for toxin YhaV_toxin CBS PF00571.28 gi|307596247|ref|YP_003902564.1| - 1.4e-21 76.7 10.2 3e-11 43.6 3.0 2.3 2 0 0 2 2 2 2 CBS domain SatRNA_48 PF17485.2 gi|307596247|ref|YP_003902564.1| - 0.056 12.6 0.3 0.062 12.4 0.3 1.1 1 0 0 1 1 1 0 Satellite RNA 48 kDa protein MFS_1 PF07690.16 gi|307596248|ref|YP_003902565.1| - 1.5 7.6 63.3 16 4.3 63.4 2.5 1 1 0 1 1 1 0 Major Facilitator Superfamily UPF0560 PF10577.9 gi|307596248|ref|YP_003902565.1| - 2.9 6.3 4.1 4.4 5.7 4.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0560 Radical_SAM PF04055.21 gi|307596249|ref|YP_003902566.1| - 5.9e-14 52.8 0.1 1.4e-13 51.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Hexokinase_2 PF03727.16 gi|307596249|ref|YP_003902566.1| - 0.093 12.1 0.0 0.37 10.2 0.0 1.8 2 0 0 2 2 2 0 Hexokinase B12-binding PF02310.19 gi|307596249|ref|YP_003902566.1| - 0.12 12.4 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain eIF-5_eIF-2B PF01873.17 gi|307596250|ref|YP_003902567.1| - 1.5e-29 102.2 0.0 1.9e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|307596250|ref|YP_003902567.1| - 0.0031 17.0 1.1 0.0052 16.3 1.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|307596250|ref|YP_003902567.1| - 0.006 16.9 0.4 0.01 16.2 0.4 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar USP7_ICP0_bdg PF12436.8 gi|307596250|ref|YP_003902567.1| - 0.02 14.2 0.0 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 ICP0-binding domain of Ubiquitin-specific protease 7 Rubredoxin_2 PF18073.1 gi|307596250|ref|YP_003902567.1| - 0.021 14.6 0.2 8.2 6.3 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|307596250|ref|YP_003902567.1| - 0.074 13.2 0.1 13 6.0 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain HTH_38 PF13936.6 gi|307596250|ref|YP_003902567.1| - 0.077 12.8 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Elf1 PF05129.13 gi|307596250|ref|YP_003902567.1| - 0.12 12.4 0.1 0.22 11.6 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF35_N PF12172.8 gi|307596250|ref|YP_003902567.1| - 0.86 9.5 4.3 0.64 10.0 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PhnA_Zn_Ribbon PF08274.12 gi|307596250|ref|YP_003902567.1| - 1.1 9.3 3.7 0.51 10.3 1.0 1.8 2 1 0 2 2 2 0 PhnA Zinc-Ribbon ACT_4 PF13291.6 gi|307596251|ref|YP_003902568.1| - 0.079 13.6 1.1 1.1 9.9 0.1 3.0 2 1 0 2 2 2 0 ACT domain ACT PF01842.25 gi|307596251|ref|YP_003902568.1| - 0.093 12.5 0.1 1.3 8.8 0.0 2.3 2 0 0 2 2 2 0 ACT domain Adenosine_kin PF04008.14 gi|307596251|ref|YP_003902568.1| - 0.099 12.4 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Adenosine specific kinase CCG PF02754.16 gi|307596252|ref|YP_003902569.1| - 1.2e-07 31.8 0.0 3.4e-06 27.2 0.0 2.3 2 0 0 2 2 2 1 Cysteine-rich domain zf-IS66 PF13005.7 gi|307596252|ref|YP_003902569.1| - 0.15 12.4 0.3 4.9 7.6 0.0 2.8 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 sCache_2 PF17200.4 gi|307596253|ref|YP_003902570.1| - 0.019 14.8 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Single Cache domain 2 DUF4596 PF15363.6 gi|307596253|ref|YP_003902570.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4596) Peptidase_M24 PF00557.24 gi|307596254|ref|YP_003902571.1| - 9.2e-39 133.3 0.0 1.2e-38 133.0 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|307596254|ref|YP_003902571.1| - 4.6e-17 62.9 0.0 8.7e-17 62.0 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF998 PF06197.13 gi|307596255|ref|YP_003902572.1| - 1.5e-26 93.1 18.8 1.8e-26 92.9 18.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Thioredoxin_4 PF13462.6 gi|307596256|ref|YP_003902573.1| - 8.8e-09 35.7 0.0 1.2e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|307596256|ref|YP_003902573.1| - 7.1e-06 26.4 0.0 2.2e-05 24.9 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|307596256|ref|YP_003902573.1| - 0.00054 19.8 1.0 0.067 13.0 0.0 2.4 1 1 1 2 2 2 2 DSBA-like thioredoxin domain ZYG-11_interact PF05884.12 gi|307596257|ref|YP_003902574.1| - 0.36 10.2 7.3 0.55 9.6 7.3 1.3 1 0 0 1 1 1 0 Interactor of ZYG-11 Proton_antipo_M PF00361.20 gi|307596258|ref|YP_003902575.1| - 5.4e-23 81.6 32.3 5.4e-23 81.6 32.3 3.3 1 1 1 2 2 2 1 Proton-conducting membrane transporter DUF2537 PF10801.8 gi|307596258|ref|YP_003902575.1| - 0.017 15.3 2.8 0.017 15.3 2.8 4.5 2 2 2 5 5 5 0 Protein of unknown function (DUF2537) Oxidored_q2 PF00420.24 gi|307596259|ref|YP_003902576.1| - 1.2e-05 24.9 10.5 2.7e-05 23.7 10.5 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Fun_ATP-synt_8 PF05933.13 gi|307596259|ref|YP_003902576.1| - 0.061 13.5 7.4 0.33 11.2 0.7 2.4 2 0 0 2 2 2 0 Fungal ATP synthase protein 8 (A6L) Oxidored_q3 PF00499.20 gi|307596260|ref|YP_003902577.1| - 0.0057 16.4 21.2 0.0082 15.9 21.2 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF3810 PF12725.7 gi|307596260|ref|YP_003902577.1| - 6.3 6.1 8.3 6.4 6.0 7.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) CobA_CobO_BtuR PF02572.15 gi|307596261|ref|YP_003902578.1| - 4.9e-43 147.4 0.0 6.3e-43 147.0 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TniB PF05621.11 gi|307596261|ref|YP_003902578.1| - 0.0015 18.0 0.0 0.0022 17.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial TniB protein EF-hand_6 PF13405.6 gi|307596261|ref|YP_003902578.1| - 0.078 12.9 0.0 5.2 7.3 0.0 2.7 2 0 0 2 2 2 0 EF-hand domain AAA PF00004.29 gi|307596261|ref|YP_003902578.1| - 0.087 13.2 0.1 0.6 10.5 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HHH_7 PF14635.6 gi|307596261|ref|YP_003902578.1| - 0.09 13.1 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif AAA_16 PF13191.6 gi|307596261|ref|YP_003902578.1| - 0.095 13.1 0.5 0.2 12.0 0.5 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 gi|307596261|ref|YP_003902578.1| - 0.17 11.9 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|307596261|ref|YP_003902578.1| - 0.69 9.4 2.3 5.3 6.6 2.3 2.0 1 1 0 1 1 1 0 AAA domain BtpA PF03437.15 gi|307596262|ref|YP_003902579.1| - 8.6e-79 264.6 0.8 9.9e-79 264.4 0.8 1.0 1 0 0 1 1 1 1 BtpA family HTH_5 PF01022.20 gi|307596264|ref|YP_003902581.1| - 1.3e-09 37.7 0.3 3.5e-09 36.4 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|307596264|ref|YP_003902581.1| - 6.1e-06 26.2 0.0 1.3e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|307596264|ref|YP_003902581.1| - 0.00023 21.1 0.0 0.0006 19.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_11 PF08279.12 gi|307596264|ref|YP_003902581.1| - 0.00034 20.5 0.0 0.00034 20.5 0.0 1.6 2 0 0 2 2 1 1 HTH domain HTH_28 PF13518.6 gi|307596264|ref|YP_003902581.1| - 0.00037 20.6 0.0 0.0056 16.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|307596264|ref|YP_003902581.1| - 0.00039 20.2 0.1 0.00096 19.0 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|307596264|ref|YP_003902581.1| - 0.00059 19.3 0.1 0.0013 18.3 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|307596264|ref|YP_003902581.1| - 0.0027 18.2 0.1 0.0058 17.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|307596264|ref|YP_003902581.1| - 0.0061 16.3 0.0 0.057 13.2 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_12 PF08461.10 gi|307596264|ref|YP_003902581.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain MarR PF01047.22 gi|307596264|ref|YP_003902581.1| - 0.04 13.8 0.4 0.08 12.9 0.1 1.7 2 0 0 2 2 2 0 MarR family MarR_2 PF12802.7 gi|307596264|ref|YP_003902581.1| - 0.061 13.2 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.12 gi|307596264|ref|YP_003902581.1| - 0.083 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_38 PF13936.6 gi|307596264|ref|YP_003902581.1| - 0.13 12.0 0.1 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HALZ PF02183.18 gi|307596265|ref|YP_003902582.1| - 0.00035 20.7 4.3 0.0017 18.5 2.4 2.1 1 1 1 2 2 2 2 Homeobox associated leucine zipper HemX PF04375.14 gi|307596265|ref|YP_003902582.1| - 0.0032 16.8 0.2 0.0044 16.4 0.2 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase BBP1_C PF15272.6 gi|307596265|ref|YP_003902582.1| - 0.0054 16.6 1.4 0.0083 16.0 1.4 1.2 1 0 0 1 1 1 1 Spindle pole body component BBP1, C-terminal BLOC1_2 PF10046.9 gi|307596265|ref|YP_003902582.1| - 0.0089 16.3 5.5 0.014 15.7 5.5 1.2 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|307596265|ref|YP_003902582.1| - 0.0099 14.8 0.1 0.014 14.3 0.1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein OmpH PF03938.14 gi|307596265|ref|YP_003902582.1| - 0.012 16.0 0.1 0.019 15.3 0.1 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) KASH_CCD PF14662.6 gi|307596265|ref|YP_003902582.1| - 0.014 15.3 0.8 0.019 14.8 0.8 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH DUF3450 PF11932.8 gi|307596265|ref|YP_003902582.1| - 0.018 14.4 0.4 0.025 13.9 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF4472 PF14739.6 gi|307596265|ref|YP_003902582.1| - 0.02 15.6 1.1 0.036 14.8 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4472) GAS PF13851.6 gi|307596265|ref|YP_003902582.1| - 0.026 13.9 0.9 0.037 13.4 0.9 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding FliD_N PF02465.18 gi|307596265|ref|YP_003902582.1| - 0.027 15.2 3.2 0.027 15.2 3.2 2.3 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus FPP PF05911.11 gi|307596265|ref|YP_003902582.1| - 0.035 12.3 0.3 0.048 11.9 0.3 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil TMF_TATA_bd PF12325.8 gi|307596265|ref|YP_003902582.1| - 0.043 14.0 0.2 0.072 13.3 0.2 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Taxilin PF09728.9 gi|307596265|ref|YP_003902582.1| - 0.065 12.4 0.9 0.088 12.0 0.9 1.0 1 0 0 1 1 1 0 Myosin-like coiled-coil protein ADIP PF11559.8 gi|307596265|ref|YP_003902582.1| - 0.067 13.3 0.8 0.1 12.7 0.8 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DivIC PF04977.15 gi|307596265|ref|YP_003902582.1| - 0.068 12.9 0.3 0.14 12.0 0.3 1.4 1 0 0 1 1 1 0 Septum formation initiator Biotin_lipoyl_2 PF13533.6 gi|307596265|ref|YP_003902582.1| - 0.079 12.8 0.1 7 6.6 0.0 2.3 2 0 0 2 2 2 0 Biotin-lipoyl like EzrA PF06160.12 gi|307596265|ref|YP_003902582.1| - 0.099 10.8 1.6 0.13 10.4 1.6 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA APG6_N PF17675.1 gi|307596265|ref|YP_003902582.1| - 0.1 13.1 1.6 0.15 12.6 1.6 1.1 1 0 0 1 1 1 0 Apg6 coiled-coil region IFT57 PF10498.9 gi|307596265|ref|YP_003902582.1| - 0.15 11.0 2.5 0.21 10.5 2.5 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 ZapB PF06005.12 gi|307596265|ref|YP_003902582.1| - 0.27 11.7 2.8 0.65 10.5 2.8 1.5 1 1 0 1 1 1 0 Cell division protein ZapB DUF3552 PF12072.8 gi|307596265|ref|YP_003902582.1| - 0.29 10.5 0.0 0.45 9.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Mod_r PF07200.13 gi|307596265|ref|YP_003902582.1| - 0.43 10.7 4.9 0.67 10.1 4.9 1.1 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein rRNA_proc-arch PF13234.6 gi|307596265|ref|YP_003902582.1| - 0.68 9.8 3.0 1.1 9.2 3.0 1.2 1 0 0 1 1 1 0 rRNA-processing arch domain bZIP_1 PF00170.21 gi|307596265|ref|YP_003902582.1| - 0.76 9.9 1.9 1.1 9.4 1.9 1.2 1 0 0 1 1 1 0 bZIP transcription factor DUF4307 PF14155.6 gi|307596265|ref|YP_003902582.1| - 1.1 9.1 3.4 4.5 7.1 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) Fer4 PF00037.27 gi|307596266|ref|YP_003902583.1| - 1.3e-21 75.4 38.6 5.9e-08 32.2 2.2 5.0 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|307596266|ref|YP_003902583.1| - 1.9e-19 70.0 29.0 4.9e-08 33.4 11.9 3.6 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307596266|ref|YP_003902583.1| - 3.9e-15 55.7 31.2 1.3e-07 31.6 10.2 3.9 3 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307596266|ref|YP_003902583.1| - 1.2e-14 54.1 48.2 6.1e-08 32.7 6.1 3.6 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307596266|ref|YP_003902583.1| - 2e-13 49.8 47.9 7.9e-06 25.7 1.3 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|307596266|ref|YP_003902583.1| - 5e-13 49.8 26.4 0.0029 18.5 0.5 4.9 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|307596266|ref|YP_003902583.1| - 7.9e-13 48.3 33.6 1.1e-05 25.5 10.1 4.3 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307596266|ref|YP_003902583.1| - 3.4e-08 33.8 22.3 0.01 16.3 0.5 4.6 4 1 0 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307596266|ref|YP_003902583.1| - 1.1e-07 31.5 36.6 0.001 19.0 3.0 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307596266|ref|YP_003902583.1| - 5e-05 23.9 46.6 0.013 16.4 4.3 5.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_15 PF13459.6 gi|307596266|ref|YP_003902583.1| - 0.00022 21.9 25.2 0.072 13.8 0.4 4.7 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|307596266|ref|YP_003902583.1| - 0.00026 21.8 22.9 0.22 12.4 1.0 4.8 6 0 0 6 6 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596266|ref|YP_003902583.1| - 0.00027 21.4 35.4 0.14 12.7 3.1 5.2 3 2 0 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307596266|ref|YP_003902583.1| - 0.0008 19.9 29.2 0.29 11.7 2.3 5.1 4 1 1 5 5 4 3 4Fe-4S single cluster domain of Ferredoxin I FlpD PF02662.16 gi|307596266|ref|YP_003902583.1| - 0.0028 17.6 0.0 0.008 16.2 0.0 1.8 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_4 PF12800.7 gi|307596266|ref|YP_003902583.1| - 0.013 15.9 46.2 0.046 14.2 3.1 5.5 6 0 0 6 6 4 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|307596266|ref|YP_003902583.1| - 0.052 13.7 8.1 1.3 9.1 0.9 2.5 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Zn-ribbon_8 PF09723.10 gi|307596266|ref|YP_003902583.1| - 0.15 12.2 0.0 0.15 12.2 0.0 3.8 3 2 0 3 3 2 0 Zinc ribbon domain Fer4_18 PF13746.6 gi|307596266|ref|YP_003902583.1| - 8.1 6.7 27.6 0.25 11.5 1.8 4.0 2 2 1 3 3 3 0 4Fe-4S dicluster domain Nitrate_red_del PF02613.15 gi|307596267|ref|YP_003902584.1| - 2.3e-13 50.4 0.0 4.6e-13 49.3 0.0 1.5 2 0 0 2 2 2 1 Nitrate reductase delta subunit Fer4_11 PF13247.6 gi|307596268|ref|YP_003902585.1| - 8.9e-22 77.1 6.5 8.9e-22 77.1 6.5 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307596268|ref|YP_003902585.1| - 5.5e-15 55.7 19.8 1.2e-07 32.2 7.2 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307596268|ref|YP_003902585.1| - 4.5e-13 48.4 30.0 2e-06 27.4 6.0 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307596268|ref|YP_003902585.1| - 8.9e-12 44.9 20.5 4.1e-08 33.2 9.4 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307596268|ref|YP_003902585.1| - 2.6e-11 43.1 31.2 1.3e-05 25.1 4.4 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|307596268|ref|YP_003902585.1| - 1.6e-10 41.0 38.8 5.5e-06 26.5 9.3 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307596268|ref|YP_003902585.1| - 9.4e-08 31.7 33.4 8.2e-05 22.5 3.3 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|307596268|ref|YP_003902585.1| - 3.4e-07 30.7 35.0 0.023 15.6 6.1 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|307596268|ref|YP_003902585.1| - 3.4e-07 31.1 17.9 0.011 16.7 0.6 4.2 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|307596268|ref|YP_003902585.1| - 1.1e-05 25.6 35.8 0.0031 17.9 3.6 4.6 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307596268|ref|YP_003902585.1| - 0.00097 19.2 26.6 0.0014 18.7 9.6 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596268|ref|YP_003902585.1| - 0.0012 19.4 23.7 0.13 12.8 3.7 4.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307596268|ref|YP_003902585.1| - 0.014 15.8 27.5 1.2 9.6 11.9 3.7 2 2 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307596268|ref|YP_003902585.1| - 4.2 8.2 13.4 6.8 7.5 0.6 3.9 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|307596268|ref|YP_003902585.1| - 6 7.8 18.9 3.4 8.6 1.6 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Molydop_binding PF01568.21 gi|307596269|ref|YP_003902586.1| - 2.2e-17 63.1 0.0 8.6e-17 61.2 0.0 2.0 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|307596269|ref|YP_003902586.1| - 1e-05 25.2 3.8 1.6e-05 24.6 3.0 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|307596269|ref|YP_003902586.1| - 0.18 11.1 0.9 0.88 9.0 0.9 2.2 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NrfD PF03916.14 gi|307596270|ref|YP_003902587.1| - 1.7e-24 87.0 38.8 3.2e-24 86.1 38.8 1.3 1 1 0 1 1 1 1 Polysulphide reductase, NrfD TrmB PF01978.19 gi|307596271|ref|YP_003902588.1| - 0.00016 21.5 0.4 0.011 15.6 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|307596271|ref|YP_003902588.1| - 0.0098 15.7 0.1 0.02 14.7 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|307596271|ref|YP_003902588.1| - 0.042 13.8 0.9 0.12 12.3 0.2 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix HTH_11 PF08279.12 gi|307596271|ref|YP_003902588.1| - 0.075 13.0 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 HTH domain FUR PF01475.19 gi|307596271|ref|YP_003902588.1| - 0.15 12.2 0.1 0.27 11.4 0.1 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_24 PF13412.6 gi|307596271|ref|YP_003902588.1| - 0.32 10.6 0.0 0.32 10.6 0.0 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Mrr_N PF14338.6 gi|307596272|ref|YP_003902589.1| - 0.0082 16.2 0.1 0.098 12.8 0.0 2.4 1 1 1 2 2 2 1 Mrr N-terminal domain HTH_45 PF14947.6 gi|307596272|ref|YP_003902589.1| - 0.014 15.3 0.1 0.027 14.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.10 gi|307596272|ref|YP_003902589.1| - 0.064 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DoxD PF04173.13 gi|307596273|ref|YP_003902590.1| - 1.1e-55 188.1 4.0 1.2e-55 188.0 4.0 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.12 gi|307596273|ref|YP_003902590.1| - 0.00086 19.9 7.6 0.00086 19.9 7.6 2.1 2 1 0 2 2 2 1 DoxX DoxA PF07680.11 gi|307596274|ref|YP_003902591.1| - 2e-40 137.7 0.0 2.4e-40 137.5 0.0 1.1 1 0 0 1 1 1 1 TQO small subunit DoxA PaREP1 PF05942.11 gi|307596275|ref|YP_003902592.1| - 7.4e-29 100.0 2.9 9.4e-29 99.7 2.9 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SMC_hinge PF06470.13 gi|307596275|ref|YP_003902592.1| - 0.021 15.1 0.1 0.042 14.2 0.1 1.7 2 0 0 2 2 2 0 SMC proteins Flexible Hinge Domain Transp_inhibit PF18791.1 gi|307596276|ref|YP_003902593.1| - 0.018 14.6 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Transport inhibitor response 1 protein domain TatC PF00902.18 gi|307596278|ref|YP_003902595.1| - 3.1e-44 151.3 28.1 5.6e-44 150.5 28.1 1.4 1 1 0 1 1 1 1 Sec-independent protein translocase protein (TatC) HTH_1 PF00126.27 gi|307596279|ref|YP_003902596.1| - 7.5e-16 57.8 0.0 1.3e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.6 gi|307596279|ref|YP_003902596.1| - 1.6e-05 24.8 0.1 2.4e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|307596279|ref|YP_003902596.1| - 0.00015 21.5 0.0 0.00028 20.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|307596279|ref|YP_003902596.1| - 0.006 16.4 0.0 0.009 15.9 0.0 1.3 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_28 PF13518.6 gi|307596279|ref|YP_003902596.1| - 0.021 14.9 0.1 0.036 14.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|307596279|ref|YP_003902596.1| - 0.028 14.4 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF2089 PF09862.9 gi|307596279|ref|YP_003902596.1| - 0.039 14.0 0.0 0.07 13.2 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_8 PF02954.19 gi|307596279|ref|YP_003902596.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_45 PF14947.6 gi|307596279|ref|YP_003902596.1| - 0.074 13.0 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|307596279|ref|YP_003902596.1| - 0.095 12.1 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Rho_N PF07498.12 gi|307596280|ref|YP_003902597.1| - 0.00032 20.5 0.1 0.0024 17.8 0.1 2.1 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain DUF4974 PF16344.5 gi|307596280|ref|YP_003902597.1| - 0.004 17.1 0.1 0.15 12.0 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4974) FAS_I_H PF18314.1 gi|307596280|ref|YP_003902597.1| - 0.0053 16.4 0.4 0.0058 16.3 0.4 1.0 1 0 0 1 1 1 1 Fatty acid synthase type I helical domain APG17 PF04108.12 gi|307596280|ref|YP_003902597.1| - 0.021 13.9 0.3 0.046 12.8 0.4 1.4 1 1 1 2 2 2 0 Autophagy protein Apg17 FliG_N PF14842.6 gi|307596280|ref|YP_003902597.1| - 0.075 13.6 0.0 0.34 11.5 0.0 1.8 1 1 1 2 2 2 0 FliG N-terminal domain CcdA PF07362.12 gi|307596280|ref|YP_003902597.1| - 0.32 11.5 0.2 0.32 11.5 0.2 2.0 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA MttA_Hcf106 PF02416.16 gi|307596281|ref|YP_003902598.1| - 3.8e-12 45.3 0.5 1.7e-11 43.3 0.5 2.0 1 1 0 1 1 1 1 mttA/Hcf106 family Rho_N PF07498.12 gi|307596281|ref|YP_003902598.1| - 3.2e-05 23.7 0.0 0.0011 18.9 0.0 2.4 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain Hom_end PF05204.14 gi|307596281|ref|YP_003902598.1| - 0.013 15.7 0.1 2.5 8.3 0.0 2.3 1 1 1 2 2 2 0 Homing endonuclease SAP PF02037.27 gi|307596281|ref|YP_003902598.1| - 0.053 13.3 0.1 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 SAP domain Sigma70_r3 PF04539.16 gi|307596281|ref|YP_003902598.1| - 0.063 13.4 0.3 2.2 8.4 0.1 2.3 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_Tnp_1 PF01527.20 gi|307596281|ref|YP_003902598.1| - 0.099 13.0 0.1 1.6 9.1 0.0 2.3 2 0 0 2 2 2 0 Transposase DUF1682 PF07946.14 gi|307596281|ref|YP_003902598.1| - 0.1 11.8 0.1 2.9 7.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1682) AhpC-TSA PF00578.21 gi|307596283|ref|YP_003902600.1| - 7.7e-30 103.4 0.0 1.5e-29 102.4 0.0 1.5 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.10 gi|307596283|ref|YP_003902600.1| - 2.5e-17 63.0 0.0 3.5e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|307596283|ref|YP_003902600.1| - 3.9e-10 39.4 0.0 6.7e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|307596283|ref|YP_003902600.1| - 0.058 13.5 0.0 0.066 13.3 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF126 PF01989.16 gi|307596284|ref|YP_003902601.1| - 3e-24 84.6 1.1 4.9e-24 83.9 1.1 1.3 1 0 0 1 1 1 1 Aconitase X swivel domain SelB-wing_2 PF09106.11 gi|307596285|ref|YP_003902602.1| - 0.019 15.1 0.2 0.051 13.8 0.0 1.9 1 1 1 2 2 2 0 Elongation factor SelB, winged helix AGOG PF09171.10 gi|307596286|ref|YP_003902603.1| - 2.1e-71 240.2 0.0 2.6e-71 239.9 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Cdd1 PF11731.8 gi|307596286|ref|YP_003902603.1| - 0.12 12.6 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus TCR_zetazeta PF11628.8 gi|307596287|ref|YP_003902604.1| - 0.31 10.8 4.7 0.19 11.4 0.6 2.4 2 0 0 2 2 2 0 T-cell surface glycoprotein CD3 zeta chain Peptidase_M50 PF02163.22 gi|307596288|ref|YP_003902605.1| - 1e-19 70.8 5.9 2e-19 69.9 5.9 1.5 1 0 0 1 1 1 1 Peptidase family M50 Tricorn_PDZ PF14685.6 gi|307596288|ref|YP_003902605.1| - 0.025 14.5 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 Tricorn protease PDZ domain PDZ_6 PF17820.1 gi|307596288|ref|YP_003902605.1| - 0.031 14.1 0.0 0.062 13.2 0.0 1.4 1 0 0 1 1 1 0 PDZ domain PDZ_1 PF12812.7 gi|307596288|ref|YP_003902605.1| - 0.15 12.1 0.0 0.41 10.7 0.0 1.7 1 0 0 1 1 1 0 PDZ-like domain DUF2576 PF10845.8 gi|307596289|ref|YP_003902606.1| - 0.085 12.5 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) DUF2208 PF09973.9 gi|307596290|ref|YP_003902607.1| - 5.7e-22 78.5 19.6 2e-21 76.7 19.6 1.7 1 1 0 1 1 1 1 Predicted membrane protein (DUF2208) Virul_fac_BrkB PF03631.15 gi|307596290|ref|YP_003902607.1| - 0.0018 17.9 3.3 0.0018 17.9 3.3 2.2 2 0 0 2 2 2 1 Virulence factor BrkB Peptidase_M56 PF05569.11 gi|307596290|ref|YP_003902607.1| - 0.0062 15.8 1.1 0.011 14.9 1.1 1.4 1 1 0 1 1 1 1 BlaR1 peptidase M56 Phage_holin_3_6 PF07332.11 gi|307596290|ref|YP_003902607.1| - 0.034 14.2 5.7 1.8 8.6 1.2 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III EMC3_TMCO1 PF01956.16 gi|307596290|ref|YP_003902607.1| - 0.05 13.3 9.5 0.13 12.0 9.4 1.7 1 1 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like DUF3278 PF11683.8 gi|307596290|ref|YP_003902607.1| - 0.34 11.0 15.5 0.27 11.3 1.5 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3278) YajC PF02699.15 gi|307596290|ref|YP_003902607.1| - 0.75 9.7 0.1 0.75 9.7 0.1 2.9 3 0 0 3 3 3 0 Preprotein translocase subunit DUF2207 PF09972.9 gi|307596290|ref|YP_003902607.1| - 9.8 4.8 19.3 0.075 11.8 2.8 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Ribosomal_60s PF00428.19 gi|307596291|ref|YP_003902608.1| - 3.2e-15 56.5 30.6 4.6e-14 52.8 30.6 1.9 1 1 0 1 1 1 1 60s Acidic ribosomal protein EF-hand_14 PF17959.1 gi|307596291|ref|YP_003902608.1| - 0.021 15.1 0.0 0.032 14.6 0.0 1.3 1 0 0 1 1 1 0 EF-hand domain PepSY_2 PF13670.6 gi|307596291|ref|YP_003902608.1| - 0.098 12.7 9.4 3.1 7.9 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF3824 PF12868.7 gi|307596291|ref|YP_003902608.1| - 1.9 9.2 6.6 2.7 8.7 6.6 1.2 1 0 0 1 1 1 0 Domain of unknwon function (DUF3824) ECH_1 PF00378.20 gi|307596293|ref|YP_003902610.1| - 2.7e-55 187.4 0.0 3.1e-55 187.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|307596293|ref|YP_003902610.1| - 1.9e-31 109.8 0.0 1e-27 97.5 0.0 2.2 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase AFOR_C PF01314.18 gi|307596294|ref|YP_003902611.1| - 1.2e-100 337.2 0.0 1.5e-100 336.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|307596294|ref|YP_003902611.1| - 3e-72 242.6 0.1 5.4e-72 241.8 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain OB_Dis3 PF17849.1 gi|307596294|ref|YP_003902611.1| - 0.14 12.2 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 Dis3-like cold-shock domain 2 (CSD2) Ubie_methyltran PF01209.18 gi|307596295|ref|YP_003902612.1| - 6.5e-16 58.4 0.0 7.1e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|307596295|ref|YP_003902612.1| - 8.3e-08 32.8 0.0 1.2e-07 32.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|307596295|ref|YP_003902612.1| - 2e-05 25.2 0.0 2.9e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|307596295|ref|YP_003902612.1| - 0.023 14.5 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307596295|ref|YP_003902612.1| - 0.03 14.1 0.0 0.93 9.3 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain PTH2 PF01981.16 gi|307596296|ref|YP_003902613.1| - 6.2e-42 142.6 0.0 6.9e-42 142.4 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 FAD_oxidored PF12831.7 gi|307596297|ref|YP_003902614.1| - 2e-07 30.7 0.3 9e-06 25.3 0.6 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|307596297|ref|YP_003902614.1| - 2.5e-06 27.6 1.5 6.3e-06 26.3 1.5 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|307596297|ref|YP_003902614.1| - 3.4e-06 26.9 5.0 0.0085 15.7 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|307596297|ref|YP_003902614.1| - 3.9e-06 26.3 1.0 0.00088 18.6 0.4 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|307596297|ref|YP_003902614.1| - 5.9e-06 25.6 6.0 0.0006 19.0 1.0 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|307596297|ref|YP_003902614.1| - 8.3e-06 25.1 4.7 0.00088 18.5 2.3 2.1 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 gi|307596297|ref|YP_003902614.1| - 2.3e-05 23.8 1.0 2.3e-05 23.8 1.0 2.4 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.19 gi|307596297|ref|YP_003902614.1| - 5.7e-05 22.5 1.5 8.9e-05 21.9 1.5 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|307596297|ref|YP_003902614.1| - 0.0003 19.6 0.3 0.00047 19.0 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.24 gi|307596297|ref|YP_003902614.1| - 0.00099 18.5 0.1 0.0029 17.0 0.0 1.7 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|307596297|ref|YP_003902614.1| - 0.0058 15.5 0.7 1.3 7.7 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.14 gi|307596297|ref|YP_003902614.1| - 0.027 14.0 1.1 0.042 13.4 1.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_3 PF13738.6 gi|307596297|ref|YP_003902614.1| - 0.21 10.8 0.2 0.32 10.2 0.2 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|307596297|ref|YP_003902614.1| - 0.51 9.3 2.7 2.1 7.3 0.8 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein ROK PF00480.20 gi|307596298|ref|YP_003902615.1| - 2.7e-62 210.9 0.0 3e-62 210.7 0.0 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|307596298|ref|YP_003902615.1| - 0.0017 17.9 0.1 0.052 13.0 0.1 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|307596298|ref|YP_003902615.1| - 0.013 15.0 0.1 0.02 14.5 0.1 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Cas_Cas4 PF01930.17 gi|307596299|ref|YP_003902616.1| - 9.1e-09 35.6 0.0 1.4e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|307596299|ref|YP_003902616.1| - 0.00032 20.7 0.1 0.00076 19.5 0.1 1.6 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.6 gi|307596299|ref|YP_003902616.1| - 0.044 13.8 0.0 0.1 12.6 0.0 1.6 1 1 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Usp PF00582.26 gi|307596300|ref|YP_003902617.1| - 1.4e-36 126.1 0.1 1.7e-36 125.8 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|307596300|ref|YP_003902617.1| - 0.021 15.5 0.1 0.026 15.2 0.1 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase ROK PF00480.20 gi|307596300|ref|YP_003902617.1| - 0.028 13.9 0.0 0.035 13.6 0.0 1.1 1 0 0 1 1 1 0 ROK family Acetyltransf_1 PF00583.25 gi|307596300|ref|YP_003902617.1| - 0.068 13.4 0.2 11 6.3 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family MS_channel PF00924.18 gi|307596301|ref|YP_003902618.1| - 2.6e-10 40.2 0.6 2.6e-10 40.2 0.6 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel YwiC PF14256.6 gi|307596301|ref|YP_003902618.1| - 0.33 11.3 5.7 0.47 10.8 5.7 1.2 1 0 0 1 1 1 0 YwiC-like protein DUF2070 PF09843.9 gi|307596301|ref|YP_003902618.1| - 0.89 7.8 9.1 1.3 7.2 9.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TrkA_N PF02254.18 gi|307596302|ref|YP_003902619.1| - 1.5e-24 86.5 1.2 2.8e-24 85.6 1.2 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|307596302|ref|YP_003902619.1| - 3.4e-10 39.6 0.7 6.1e-09 35.6 0.1 2.5 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|307596302|ref|YP_003902619.1| - 2.2e-05 24.8 0.7 4.2e-05 23.9 0.3 1.6 2 1 0 2 2 2 1 Putative NAD(P)-binding dCMP_cyt_deam_1 PF00383.23 gi|307596303|ref|YP_003902620.1| - 6.4e-15 54.9 0.0 8e-15 54.6 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|307596303|ref|YP_003902620.1| - 3.7e-07 30.4 0.0 5.1e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|307596303|ref|YP_003902620.1| - 0.0026 17.4 0.9 0.76 9.4 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DUF1610 PF07754.11 gi|307596304|ref|YP_003902621.1| - 2.9e-12 46.3 4.1 2.9e-12 46.3 4.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) DZR PF12773.7 gi|307596304|ref|YP_003902621.1| - 0.00043 20.2 11.6 0.031 14.3 11.6 2.1 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|307596304|ref|YP_003902621.1| - 0.002 17.8 5.1 0.002 17.8 5.1 3.5 2 2 0 2 2 2 1 zinc-ribbon domain Rhodanese_C PF12368.8 gi|307596304|ref|YP_003902621.1| - 0.0025 18.1 3.6 0.003 17.9 3.6 1.2 1 0 0 1 1 1 1 Rhodanase C-terminal zf-CHY PF05495.12 gi|307596304|ref|YP_003902621.1| - 0.0032 17.9 7.3 0.096 13.2 8.3 2.0 1 1 1 2 2 2 2 CHY zinc finger C1_2 PF03107.16 gi|307596304|ref|YP_003902621.1| - 0.0033 17.7 9.2 0.031 14.6 2.1 2.1 1 1 1 2 2 2 2 C1 domain HscB_4_cys PF18256.1 gi|307596304|ref|YP_003902621.1| - 0.0079 16.0 1.5 0.0079 16.0 1.5 3.0 1 1 2 3 3 3 1 Co-chaperone HscB tetracysteine metal binding motif PhnA_Zn_Ribbon PF08274.12 gi|307596304|ref|YP_003902621.1| - 0.0095 15.9 11.7 0.4 10.7 0.1 4.0 2 1 2 4 4 4 1 PhnA Zinc-Ribbon zf_UBZ PF18439.1 gi|307596304|ref|YP_003902621.1| - 0.012 15.2 12.8 0.078 12.6 0.1 3.9 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|307596304|ref|YP_003902621.1| - 0.013 15.6 10.3 0.015 15.3 0.6 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS91 PF14319.6 gi|307596304|ref|YP_003902621.1| - 0.022 14.8 0.3 0.022 14.8 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-binding domain zf-NADH-PPase PF09297.11 gi|307596304|ref|YP_003902621.1| - 0.028 14.1 2.4 0.028 14.1 2.4 3.3 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-MYND PF01753.18 gi|307596304|ref|YP_003902621.1| - 0.05 13.7 6.8 0.92 9.7 2.8 2.2 1 1 1 2 2 2 0 MYND finger zf_C2H2_13 PF18508.1 gi|307596304|ref|YP_003902621.1| - 0.056 13.0 1.0 0.056 13.0 1.0 2.8 2 2 1 3 3 3 0 Zinc finger domain zf-H2C2_2 PF13465.6 gi|307596304|ref|YP_003902621.1| - 0.062 13.8 15.5 0.89 10.1 1.1 4.1 3 1 1 4 4 4 0 Zinc-finger double domain OrfB_Zn_ribbon PF07282.11 gi|307596304|ref|YP_003902621.1| - 0.071 13.0 1.0 0.071 13.0 1.0 2.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-RING_5 PF14634.6 gi|307596304|ref|YP_003902621.1| - 0.075 13.0 11.7 3.9 7.5 11.7 2.7 1 1 0 1 1 1 0 zinc-RING finger domain zf-ribbon_3 PF13248.6 gi|307596304|ref|YP_003902621.1| - 0.1 12.1 18.8 0.21 11.1 0.2 3.7 4 0 0 4 4 4 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|307596304|ref|YP_003902621.1| - 0.12 12.4 22.2 1.4 8.9 14.5 3.7 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-UBP PF02148.19 gi|307596304|ref|YP_003902621.1| - 0.19 12.1 6.1 1.9 8.9 0.7 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Desulfoferrod_N PF06397.12 gi|307596304|ref|YP_003902621.1| - 0.27 10.9 12.7 0.95 9.1 0.4 3.6 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain NRDD PF13597.6 gi|307596304|ref|YP_003902621.1| - 0.45 9.2 11.6 0.97 8.1 6.0 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase NMD3 PF04981.13 gi|307596304|ref|YP_003902621.1| - 0.58 9.6 7.9 0.69 9.3 7.9 1.0 1 0 0 1 1 1 0 NMD3 family zf-TFIIB PF13453.6 gi|307596304|ref|YP_003902621.1| - 0.59 9.5 12.8 1.8 8.0 7.3 3.2 2 1 0 2 2 2 0 Transcription factor zinc-finger DUF2752 PF10825.8 gi|307596304|ref|YP_003902621.1| - 0.7 10.0 0.1 0.7 10.0 0.1 2.5 3 0 0 3 3 2 0 Protein of unknown function (DUF2752) TF_Zn_Ribbon PF08271.12 gi|307596304|ref|YP_003902621.1| - 1.4 8.5 15.9 0.61 9.6 4.3 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.11 gi|307596304|ref|YP_003902621.1| - 1.4 9.1 9.4 0.18 12.0 4.0 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2HC5 PF06221.13 gi|307596304|ref|YP_003902621.1| - 1.7 8.7 11.1 1.3 9.1 4.1 2.5 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type PolC_DP2 PF03833.13 gi|307596304|ref|YP_003902621.1| - 2.2 6.0 5.1 2.5 5.8 5.1 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Elf1 PF05129.13 gi|307596304|ref|YP_003902621.1| - 2.5 8.2 7.8 3.4 7.8 6.2 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 gi|307596304|ref|YP_003902621.1| - 2.6 8.2 16.9 1.6 8.9 5.2 3.3 1 1 1 2 2 2 0 Zinc ribbon domain DUF2321 PF10083.9 gi|307596304|ref|YP_003902621.1| - 3.5 7.2 6.1 0.52 9.9 1.0 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-C2H2_4 PF13894.6 gi|307596304|ref|YP_003902621.1| - 3.5 8.7 14.9 14 6.8 0.4 4.1 4 0 0 4 4 4 0 C2H2-type zinc finger Ribosomal_L32p PF01783.23 gi|307596304|ref|YP_003902621.1| - 4.6 7.6 11.0 0.34 11.2 2.7 2.7 1 1 0 2 2 2 0 Ribosomal L32p protein family zf-C2H2 PF00096.26 gi|307596304|ref|YP_003902621.1| - 5.2 7.7 17.0 11 6.7 0.6 4.1 3 1 1 4 4 4 0 Zinc finger, C2H2 type zf-dskA_traR PF01258.17 gi|307596304|ref|YP_003902621.1| - 7 6.7 13.0 1 9.4 0.2 3.7 2 2 1 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Sgf11 PF08209.11 gi|307596304|ref|YP_003902621.1| - 7.3 6.2 17.3 1.7 8.3 0.3 4.0 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) SpoIIM PF01944.17 gi|307596306|ref|YP_003902623.1| - 1.2e-12 48.2 17.9 1.9e-12 47.5 17.8 1.3 1 1 0 1 1 1 1 Stage II sporulation protein M ATP-synt_D PF01813.17 gi|307596307|ref|YP_003902624.1| - 2.7e-30 105.7 1.7 3e-30 105.5 1.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Med4 PF10018.9 gi|307596307|ref|YP_003902624.1| - 0.089 12.5 0.4 0.37 10.4 0.2 1.8 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 MMR_HSR1 PF01926.23 gi|307596308|ref|YP_003902625.1| - 4.1e-19 68.7 0.1 1e-13 51.4 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|307596308|ref|YP_003902625.1| - 1.2e-09 37.9 0.4 2.3e-06 27.2 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|307596308|ref|YP_003902625.1| - 2.5e-08 34.0 0.0 6e-08 32.8 0.0 1.6 1 1 0 1 1 1 1 RsgA GTPase GTP_EFTU PF00009.27 gi|307596308|ref|YP_003902625.1| - 9.6e-08 31.8 0.0 7e-06 25.7 0.0 3.2 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|307596308|ref|YP_003902625.1| - 1.4e-05 25.3 0.2 0.025 14.6 0.0 3.1 3 0 0 3 3 3 1 Dynamin family Arf PF00025.21 gi|307596308|ref|YP_003902625.1| - 0.00014 21.4 0.0 0.018 14.5 0.0 2.2 1 1 1 2 2 2 1 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 gi|307596308|ref|YP_003902625.1| - 0.001 19.0 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AIG1 PF04548.16 gi|307596308|ref|YP_003902625.1| - 0.0012 18.2 0.0 0.021 14.2 0.0 2.1 2 0 0 2 2 2 1 AIG1 family cobW PF02492.19 gi|307596308|ref|YP_003902625.1| - 0.0045 16.6 0.0 0.066 12.8 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|307596308|ref|YP_003902625.1| - 0.023 15.2 0.0 0.073 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|307596308|ref|YP_003902625.1| - 0.03 13.3 0.2 0.23 10.4 0.0 2.1 1 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ras PF00071.22 gi|307596308|ref|YP_003902625.1| - 0.059 13.0 0.0 11 5.6 0.0 2.1 2 0 0 2 2 2 0 Ras family Roc PF08477.13 gi|307596308|ref|YP_003902625.1| - 0.07 13.4 0.0 2 8.7 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase CdhD PF03599.16 gi|307596308|ref|YP_003902625.1| - 0.12 11.0 0.0 0.24 10.1 0.0 1.4 2 0 0 2 2 2 0 CO dehydrogenase/acetyl-CoA synthase delta subunit NTPase_1 PF03266.15 gi|307596308|ref|YP_003902625.1| - 0.2 11.6 0.5 20 5.0 0.0 2.4 2 1 0 2 2 2 0 NTPase DUF2207 PF09972.9 gi|307596310|ref|YP_003902627.1| - 5.2 5.7 8.1 1.1e+02 1.3 8.1 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Mrr_cat PF04471.12 gi|307596312|ref|YP_003902629.1| - 0.0041 17.1 0.0 0.0088 16.1 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease Hjc PF01870.18 gi|307596312|ref|YP_003902629.1| - 0.12 12.4 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) GTP_EFTU_D4 PF14578.6 gi|307596313|ref|YP_003902630.1| - 4.9e-39 132.1 3.8 1.4e-38 130.7 3.8 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|307596313|ref|YP_003902630.1| - 2.3e-28 99.1 0.0 1e-27 97.0 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|307596313|ref|YP_003902630.1| - 5.1e-17 61.9 0.4 1.8e-16 60.1 0.1 2.0 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|307596313|ref|YP_003902630.1| - 1e-08 35.4 7.7 2.8e-08 34.0 0.1 3.5 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|307596313|ref|YP_003902630.1| - 5.7e-05 23.2 0.0 0.00015 21.9 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|307596313|ref|YP_003902630.1| - 0.01 16.1 0.0 0.022 15.0 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|307596313|ref|YP_003902630.1| - 0.034 13.7 0.0 0.41 10.2 0.0 2.2 1 1 0 1 1 1 0 Ras family ATP_bind_1 PF03029.17 gi|307596313|ref|YP_003902630.1| - 0.098 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PALP PF00291.25 gi|307596314|ref|YP_003902631.1| - 1.1e-37 130.0 0.0 1.3e-37 129.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme AAA_14 PF13173.6 gi|307596315|ref|YP_003902632.1| - 1.8e-25 89.5 0.1 4.2e-25 88.3 0.1 1.6 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|307596315|ref|YP_003902632.1| - 2.5e-07 30.9 0.5 6.1e-07 29.6 0.1 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea HTH_11 PF08279.12 gi|307596315|ref|YP_003902632.1| - 1.5e-05 24.8 0.2 3.8e-05 23.5 0.2 1.7 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|307596315|ref|YP_003902632.1| - 3.6e-05 23.2 0.3 7.4e-05 22.2 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PuR_N PF09182.10 gi|307596315|ref|YP_003902632.1| - 0.00042 20.2 0.5 0.014 15.3 0.1 2.6 2 0 0 2 2 2 1 Bacterial purine repressor, N-terminal DUF4143 PF13635.6 gi|307596315|ref|YP_003902632.1| - 0.0017 18.5 0.1 0.0028 17.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) NUMOD1 PF07453.13 gi|307596315|ref|YP_003902632.1| - 0.0017 18.5 0.4 0.0047 17.2 0.4 1.7 1 0 0 1 1 1 1 NUMOD1 domain HTH_36 PF13730.6 gi|307596315|ref|YP_003902632.1| - 0.0028 17.6 0.1 0.0063 16.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain AAA PF00004.29 gi|307596315|ref|YP_003902632.1| - 0.0042 17.5 0.0 0.0092 16.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HTH_23 PF13384.6 gi|307596315|ref|YP_003902632.1| - 0.0055 16.5 0.0 0.017 14.9 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain RNA_helicase PF00910.22 gi|307596315|ref|YP_003902632.1| - 0.01 16.2 0.0 0.022 15.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase HTH_AsnC-type PF13404.6 gi|307596315|ref|YP_003902632.1| - 0.018 14.8 0.0 0.041 13.7 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|307596315|ref|YP_003902632.1| - 0.028 14.6 0.1 0.056 13.7 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|307596315|ref|YP_003902632.1| - 0.028 14.2 0.0 0.063 13.1 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Mga PF08280.11 gi|307596315|ref|YP_003902632.1| - 0.029 14.4 0.2 0.11 12.6 0.2 2.0 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Cdc6_C PF09079.11 gi|307596315|ref|YP_003902632.1| - 0.049 13.6 0.2 0.18 11.8 0.0 2.0 2 0 0 2 2 1 0 CDC6, C terminal winged helix domain GerE PF00196.19 gi|307596315|ref|YP_003902632.1| - 0.077 12.6 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family AAA_22 PF13401.6 gi|307596315|ref|YP_003902632.1| - 0.1 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain GntR PF00392.21 gi|307596315|ref|YP_003902632.1| - 0.1 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|307596315|ref|YP_003902632.1| - 0.12 12.5 0.0 0.36 11.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_16 PF13191.6 gi|307596315|ref|YP_003902632.1| - 0.16 12.4 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain PMBR PF09373.10 gi|307596315|ref|YP_003902632.1| - 1.4 9.2 6.0 1.2 9.4 0.1 3.6 4 0 0 4 4 3 0 Pseudomurein-binding repeat HpaB_N PF11794.8 gi|307596316|ref|YP_003902633.1| - 9.9e-84 281.2 2.8 1.4e-83 280.7 2.8 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|307596316|ref|YP_003902633.1| - 2.1e-54 183.7 1.5 2.8e-54 183.3 1.5 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.19 gi|307596316|ref|YP_003902633.1| - 9.5e-05 22.5 0.0 0.0002 21.5 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 gi|307596317|ref|YP_003902634.1| - 1.4e-44 151.9 0.6 2.2e-44 151.3 0.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|307596317|ref|YP_003902634.1| - 1.7e-28 99.5 0.1 3.4e-28 98.6 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|307596317|ref|YP_003902634.1| - 3.4e-24 84.9 0.0 7.8e-24 83.7 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|307596317|ref|YP_003902634.1| - 3.2e-22 79.2 0.1 4.7e-22 78.7 0.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|307596317|ref|YP_003902634.1| - 0.0017 18.1 0.1 0.0038 16.9 0.1 1.5 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|307596317|ref|YP_003902634.1| - 0.069 12.2 0.2 0.13 11.3 0.2 1.4 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal AMP-binding PF00501.28 gi|307596318|ref|YP_003902635.1| - 1.8e-86 290.4 0.0 2.2e-86 290.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|307596318|ref|YP_003902635.1| - 2.1e-21 76.7 1.3 3.5e-21 75.9 0.4 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Amidohydro_2 PF04909.14 gi|307596319|ref|YP_003902636.1| - 3.2e-16 60.0 0.0 4.9e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase MFS_1 PF07690.16 gi|307596321|ref|YP_003902638.1| - 8.3e-28 97.3 56.9 8.3e-28 97.3 56.9 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily Aim19 PF10315.9 gi|307596321|ref|YP_003902638.1| - 0.02 15.2 2.4 0.02 15.2 2.4 2.5 3 0 0 3 3 3 0 Altered inheritance of mitochondria protein 19 AA_permease PF00324.21 gi|307596322|ref|YP_003902639.1| - 2.6e-29 102.2 48.0 3.6e-29 101.7 48.0 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|307596322|ref|YP_003902639.1| - 4.8e-17 61.9 50.0 7.8e-17 61.2 49.9 1.3 1 1 0 1 1 1 1 Amino acid permease HCV_NS4a PF01006.20 gi|307596322|ref|YP_003902639.1| - 0.2 11.4 2.5 1.3 8.9 2.5 2.5 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a DUF364 PF04016.12 gi|307596324|ref|YP_003902641.1| - 9.3e-29 99.9 0.0 1.5e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|307596324|ref|YP_003902641.1| - 4.2e-08 33.3 0.0 7.3e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF473 PF04322.12 gi|307596324|ref|YP_003902641.1| - 0.032 14.1 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF473) DUF72 PF01904.18 gi|307596325|ref|YP_003902642.1| - 9.1e-33 114.2 0.0 1.1e-32 113.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Asp_protease_2 PF13650.6 gi|307596326|ref|YP_003902643.1| - 1.5e-06 28.7 0.0 1.6e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|307596326|ref|YP_003902643.1| - 0.00021 21.8 0.0 0.00023 21.7 0.0 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease PIN PF01850.21 gi|307596327|ref|YP_003902644.1| - 1.1e-11 45.3 0.1 1.3e-11 45.0 0.1 1.1 1 0 0 1 1 1 1 PIN domain RHH_6 PF16762.5 gi|307596328|ref|YP_003902645.1| - 0.011 16.3 0.0 0.016 15.8 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix domain RibD_C PF01872.17 gi|307596329|ref|YP_003902646.1| - 1.1e-56 191.8 0.0 1.3e-56 191.7 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF359 PF04019.12 gi|307596330|ref|YP_003902647.1| - 8.9e-31 106.2 0.0 1.2e-30 105.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) ADH_zinc_N PF00107.26 gi|307596330|ref|YP_003902647.1| - 0.14 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Mis12 PF05859.12 gi|307596330|ref|YP_003902647.1| - 0.19 11.8 0.1 0.38 10.8 0.1 1.5 1 1 0 1 1 1 0 Mis12 protein Prok-RING_2 PF14445.6 gi|307596332|ref|YP_003902649.1| - 0.03 14.5 0.3 0.03 14.5 0.3 1.8 2 0 0 2 2 2 0 Prokaryotic RING finger family 2 Tnp_zf-ribbon_2 PF13842.6 gi|307596332|ref|YP_003902649.1| - 0.037 14.8 0.4 0.094 13.5 0.4 1.6 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon zf-UDP PF14569.6 gi|307596332|ref|YP_003902649.1| - 0.051 13.7 0.8 0.18 11.9 0.6 1.8 1 1 1 2 2 2 0 Zinc-binding RING-finger TruD PF01142.18 gi|307596333|ref|YP_003902650.1| - 2.1e-132 441.9 0.0 2.4e-132 441.7 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) E_Pc_C PF06752.12 gi|307596335|ref|YP_003902652.1| - 0.043 13.9 8.5 0.11 12.6 8.5 1.6 1 0 0 1 1 1 0 Enhancer of Polycomb C-terminus eIF-5_eIF-2B PF01873.17 gi|307596335|ref|YP_003902652.1| - 0.12 12.3 0.2 6 6.8 0.0 3.0 3 0 0 3 3 3 0 Domain found in IF2B/IF5 Phage_holin_3_2 PF04550.12 gi|307596335|ref|YP_003902652.1| - 1.8 9.1 6.0 19 5.9 2.7 3.3 3 0 0 3 3 3 0 Phage holin family 2 DUF89 PF01937.19 gi|307596336|ref|YP_003902653.1| - 2.1e-19 69.7 0.2 2e-12 46.7 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function DUF89 Oxidored_molyb PF00174.19 gi|307596337|ref|YP_003902654.1| - 7e-34 116.9 0.0 9.2e-34 116.5 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Linocin_M18 PF04454.12 gi|307596338|ref|YP_003902655.1| - 3.5e-32 111.7 0.0 5.2e-32 111.1 0.0 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|307596338|ref|YP_003902655.1| - 1.2e-07 32.2 0.4 2.1e-07 31.4 0.1 1.5 2 0 0 2 2 2 1 Rubrerythrin Ferritin PF00210.24 gi|307596338|ref|YP_003902655.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Ferritin-like domain DUF2202 PF09968.9 gi|307596338|ref|YP_003902655.1| - 0.019 14.8 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) DUF2383 PF09537.10 gi|307596338|ref|YP_003902655.1| - 0.058 13.7 0.1 0.12 12.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) UPF0126 PF03458.13 gi|307596339|ref|YP_003902656.1| - 3.4e-40 135.8 24.8 5.3e-23 80.7 8.6 2.5 3 0 0 3 3 3 2 UPF0126 domain EI24 PF07264.11 gi|307596339|ref|YP_003902656.1| - 0.0025 18.1 3.5 0.0071 16.6 3.6 1.6 1 1 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) DUF485 PF04341.12 gi|307596339|ref|YP_003902656.1| - 2.3 8.2 11.0 1.5 8.9 1.0 2.7 3 0 0 3 3 3 0 Protein of unknown function, DUF485 T3SS_TC PF06511.11 gi|307596340|ref|YP_003902657.1| - 0.048 13.0 0.0 0.053 12.9 0.0 1.1 1 0 0 1 1 1 0 Type III secretion systems tip complex components EFP PF01132.20 gi|307596340|ref|YP_003902657.1| - 0.1 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain AAA PF00004.29 gi|307596341|ref|YP_003902658.1| - 2e-15 57.4 0.1 3.8e-14 53.3 0.0 2.7 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) RFC1 PF08519.12 gi|307596341|ref|YP_003902658.1| - 2.7e-09 37.4 0.1 4.1e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain RuvB_N PF05496.12 gi|307596341|ref|YP_003902658.1| - 2.1e-08 34.1 0.0 4.9e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|307596341|ref|YP_003902658.1| - 2.2e-07 31.0 0.0 8.3e-07 29.1 0.0 2.0 2 0 0 2 2 2 1 Rad17 P-loop domain DNA_pol3_delta PF06144.13 gi|307596341|ref|YP_003902658.1| - 1.5e-06 28.1 0.0 2.9e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_33 PF13671.6 gi|307596341|ref|YP_003902658.1| - 5.5e-06 26.6 0.0 1.2e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|307596341|ref|YP_003902658.1| - 6.1e-06 25.7 0.0 1.1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_assoc_2 PF16193.5 gi|307596341|ref|YP_003902658.1| - 9.9e-06 25.8 0.1 2.3e-05 24.7 0.1 1.6 1 0 0 1 1 1 1 AAA C-terminal domain AAA_5 PF07728.14 gi|307596341|ref|YP_003902658.1| - 1.1e-05 25.5 0.2 0.00013 22.0 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|307596341|ref|YP_003902658.1| - 3.8e-05 24.0 0.0 9.6e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|307596341|ref|YP_003902658.1| - 3.9e-05 24.1 0.0 0.00021 21.8 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.13 gi|307596341|ref|YP_003902658.1| - 5e-05 22.6 0.0 0.00018 20.8 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|307596341|ref|YP_003902658.1| - 5.5e-05 23.0 0.0 0.00016 21.5 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|307596341|ref|YP_003902658.1| - 8.1e-05 23.2 0.2 0.00044 20.8 0.0 2.3 3 0 0 3 3 1 1 AAA domain AAA_14 PF13173.6 gi|307596341|ref|YP_003902658.1| - 0.0002 21.4 0.0 0.0004 20.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|307596341|ref|YP_003902658.1| - 0.00025 21.0 0.0 0.32 10.9 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.6 gi|307596341|ref|YP_003902658.1| - 0.00025 21.3 0.9 0.0038 17.5 0.0 3.0 2 1 2 4 4 3 1 AAA domain AAA_7 PF12775.7 gi|307596341|ref|YP_003902658.1| - 0.00035 20.1 0.0 0.00057 19.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|307596341|ref|YP_003902658.1| - 0.00069 19.2 0.0 0.0019 17.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|307596341|ref|YP_003902658.1| - 0.00086 18.6 0.0 0.0017 17.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|307596341|ref|YP_003902658.1| - 0.0034 17.1 0.0 0.0062 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|307596341|ref|YP_003902658.1| - 0.0035 17.8 0.7 0.021 15.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain PPV_E1_C PF00519.17 gi|307596341|ref|YP_003902658.1| - 0.0039 16.1 0.0 0.034 13.0 0.0 2.0 2 0 0 2 2 2 1 Papillomavirus helicase NB-ARC PF00931.22 gi|307596341|ref|YP_003902658.1| - 0.0068 15.6 0.0 0.069 12.3 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain Mg_chelatase PF01078.21 gi|307596341|ref|YP_003902658.1| - 0.0068 15.8 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Bac_DnaA PF00308.18 gi|307596341|ref|YP_003902658.1| - 0.0087 15.9 0.0 0.036 13.9 0.0 1.9 1 1 0 1 1 1 1 Bacterial dnaA protein ATPase PF06745.13 gi|307596341|ref|YP_003902658.1| - 0.0093 15.3 0.0 0.045 13.1 0.0 2.1 2 0 0 2 2 2 1 KaiC PhoH PF02562.16 gi|307596341|ref|YP_003902658.1| - 0.0098 15.4 0.0 0.03 13.8 0.0 1.8 2 0 0 2 2 1 1 PhoH-like protein ABC_tran PF00005.27 gi|307596341|ref|YP_003902658.1| - 0.014 15.9 0.1 0.054 14.0 0.0 1.9 2 0 0 2 2 2 0 ABC transporter RNA_helicase PF00910.22 gi|307596341|ref|YP_003902658.1| - 0.019 15.3 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|307596341|ref|YP_003902658.1| - 0.023 14.4 0.1 0.055 13.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|307596341|ref|YP_003902658.1| - 0.026 14.3 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation T2SSE PF00437.20 gi|307596341|ref|YP_003902658.1| - 0.026 13.6 0.0 0.071 12.2 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|307596341|ref|YP_003902658.1| - 0.039 14.1 0.0 0.17 12.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain Sigma54_activat PF00158.26 gi|307596341|ref|YP_003902658.1| - 0.041 13.6 0.0 0.12 12.0 0.0 1.9 2 0 0 2 2 1 0 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|307596341|ref|YP_003902658.1| - 0.043 12.9 0.0 0.09 11.9 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.6 gi|307596341|ref|YP_003902658.1| - 0.044 13.6 0.0 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_6 PF12774.7 gi|307596341|ref|YP_003902658.1| - 0.047 12.7 0.0 0.084 11.8 0.0 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region TniB PF05621.11 gi|307596341|ref|YP_003902658.1| - 0.049 13.0 0.1 2 7.8 0.0 2.6 2 1 1 3 3 3 0 Bacterial TniB protein IPT PF01745.16 gi|307596341|ref|YP_003902658.1| - 0.05 13.0 0.0 0.097 12.1 0.0 1.5 1 0 0 1 1 1 0 Isopentenyl transferase AAA_2 PF07724.14 gi|307596341|ref|YP_003902658.1| - 0.062 13.4 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) ResIII PF04851.15 gi|307596341|ref|YP_003902658.1| - 0.067 13.2 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TsaE PF02367.17 gi|307596341|ref|YP_003902658.1| - 0.07 13.1 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|307596341|ref|YP_003902658.1| - 0.076 12.9 0.0 0.22 11.4 0.0 1.8 2 0 0 2 2 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|307596341|ref|YP_003902658.1| - 0.081 13.0 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|307596341|ref|YP_003902658.1| - 0.11 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PT-TG PF14449.6 gi|307596341|ref|YP_003902658.1| - 0.12 12.3 0.1 0.36 10.7 0.1 1.8 1 0 0 1 1 1 0 Pre-toxin TG NTPase_1 PF03266.15 gi|307596341|ref|YP_003902658.1| - 0.12 12.3 0.0 0.38 10.7 0.0 1.8 2 0 0 2 2 1 0 NTPase Rep_fac_C PF08542.11 gi|307596342|ref|YP_003902659.1| - 2.9e-21 75.7 0.0 8.2e-21 74.2 0.0 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|307596342|ref|YP_003902659.1| - 1.1e-17 64.6 0.0 3.7e-17 63.0 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|307596342|ref|YP_003902659.1| - 2.2e-16 60.1 0.0 2.9e-11 43.4 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|307596342|ref|YP_003902659.1| - 1.8e-09 37.6 0.0 4.2e-09 36.4 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|307596342|ref|YP_003902659.1| - 2.6e-07 30.9 0.0 1.1e-06 28.8 0.0 2.1 1 0 0 1 1 1 1 AAA C-terminal domain AAA_16 PF13191.6 gi|307596342|ref|YP_003902659.1| - 8.4e-07 29.5 0.0 0.00037 20.9 0.0 2.6 2 1 1 3 3 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|307596342|ref|YP_003902659.1| - 1e-06 28.8 0.0 2.2e-06 27.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|307596342|ref|YP_003902659.1| - 2.3e-06 27.5 0.0 5.6e-06 26.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.6 gi|307596342|ref|YP_003902659.1| - 2.5e-06 27.8 0.1 0.003 17.8 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|307596342|ref|YP_003902659.1| - 1.1e-05 25.2 0.0 1.8e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|307596342|ref|YP_003902659.1| - 3e-05 24.0 0.0 5.9e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain T2SSE PF00437.20 gi|307596342|ref|YP_003902659.1| - 4.4e-05 22.7 0.0 0.0032 16.6 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein ResIII PF04851.15 gi|307596342|ref|YP_003902659.1| - 4.6e-05 23.5 0.0 0.00021 21.3 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|307596342|ref|YP_003902659.1| - 5e-05 22.8 0.0 0.0016 17.9 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|307596342|ref|YP_003902659.1| - 0.00016 21.7 0.1 0.00053 20.0 0.0 1.9 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|307596342|ref|YP_003902659.1| - 0.0002 20.9 0.0 0.078 12.4 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|307596342|ref|YP_003902659.1| - 0.0002 21.2 0.5 0.00083 19.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|307596342|ref|YP_003902659.1| - 0.0003 20.6 0.0 0.0013 18.5 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_3 PF07726.11 gi|307596342|ref|YP_003902659.1| - 0.00056 19.8 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|307596342|ref|YP_003902659.1| - 0.00061 19.6 0.0 0.00099 19.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|307596342|ref|YP_003902659.1| - 0.00076 20.0 0.0 0.0034 17.9 0.0 2.1 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|307596342|ref|YP_003902659.1| - 0.00097 18.4 0.0 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain DEAD PF00270.29 gi|307596342|ref|YP_003902659.1| - 0.0011 18.7 0.2 0.062 13.1 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase DUF815 PF05673.13 gi|307596342|ref|YP_003902659.1| - 0.0013 18.0 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|307596342|ref|YP_003902659.1| - 0.0022 17.9 0.0 0.014 15.4 0.0 2.0 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|307596342|ref|YP_003902659.1| - 0.0035 16.9 0.0 0.0061 16.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region NB-ARC PF00931.22 gi|307596342|ref|YP_003902659.1| - 0.0038 16.5 0.0 0.0064 15.7 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain ATPase PF06745.13 gi|307596342|ref|YP_003902659.1| - 0.004 16.5 0.0 0.018 14.4 0.0 2.0 2 0 0 2 2 2 1 KaiC RNA_helicase PF00910.22 gi|307596342|ref|YP_003902659.1| - 0.0049 17.3 0.0 0.012 16.0 0.0 1.8 1 1 0 1 1 1 1 RNA helicase TniB PF05621.11 gi|307596342|ref|YP_003902659.1| - 0.0053 16.2 0.0 0.4 10.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein AAA_19 PF13245.6 gi|307596342|ref|YP_003902659.1| - 0.0062 16.9 0.5 0.11 12.9 0.1 2.5 2 1 1 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|307596342|ref|YP_003902659.1| - 0.0075 16.4 0.0 0.019 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain Parvo_NS1 PF01057.17 gi|307596342|ref|YP_003902659.1| - 0.01 14.9 0.0 0.022 13.9 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.26 gi|307596342|ref|YP_003902659.1| - 0.014 15.1 0.0 0.64 9.7 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain DNA_pol3_delta PF06144.13 gi|307596342|ref|YP_003902659.1| - 0.015 15.1 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit MeaB PF03308.16 gi|307596342|ref|YP_003902659.1| - 0.019 13.9 0.1 0.67 8.9 0.0 2.4 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF2075 PF09848.9 gi|307596342|ref|YP_003902659.1| - 0.021 14.1 0.0 0.44 9.7 0.0 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|307596342|ref|YP_003902659.1| - 0.026 14.2 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MCM PF00493.23 gi|307596342|ref|YP_003902659.1| - 0.035 13.2 0.0 0.081 12.0 0.0 1.6 1 0 0 1 1 1 0 MCM P-loop domain AAA_23 PF13476.6 gi|307596342|ref|YP_003902659.1| - 0.038 14.5 0.0 0.068 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|307596342|ref|YP_003902659.1| - 0.041 14.1 1.0 0.12 12.6 0.0 2.3 3 1 0 3 3 2 0 AAA domain DNA_pol3_gamma3 PF12169.8 gi|307596342|ref|YP_003902659.1| - 0.043 13.7 0.2 3.8 7.4 0.0 3.1 2 1 1 3 3 3 0 DNA polymerase III subunits gamma and tau domain III DUF2884 PF11101.8 gi|307596342|ref|YP_003902659.1| - 0.073 12.6 0.1 0.16 11.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) NACHT PF05729.12 gi|307596342|ref|YP_003902659.1| - 0.083 12.8 0.0 1.2 9.0 0.0 2.2 1 1 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|307596342|ref|YP_003902659.1| - 0.085 12.9 0.0 0.25 11.4 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_17 PF13207.6 gi|307596342|ref|YP_003902659.1| - 0.12 12.8 0.3 0.66 10.4 0.1 2.4 2 1 0 2 2 2 0 AAA domain SNF2_N PF00176.23 gi|307596342|ref|YP_003902659.1| - 0.2 10.3 0.0 0.34 9.6 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain Ribosomal_S7 PF00177.21 gi|307596343|ref|YP_003902660.1| - 3.9e-44 149.9 0.4 5.3e-44 149.5 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e RtcB PF01139.17 gi|307596344|ref|YP_003902661.1| - 9.8e-157 522.4 0.0 1.3e-156 521.9 0.0 1.2 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.15 gi|307596344|ref|YP_003902661.1| - 0.069 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Complex 1 protein (LYR family) TPR_MalT PF17874.1 gi|307596345|ref|YP_003902662.1| - 0.2 11.0 0.0 0.2 11.0 0.0 1.0 1 0 0 1 1 1 0 MalT-like TPR region MFS_1 PF07690.16 gi|307596347|ref|YP_003902664.1| - 3.3e-09 36.1 45.7 3.3e-09 36.1 45.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily GatB_N PF02934.15 gi|307596348|ref|YP_003902665.1| - 5.9e-67 225.9 0.0 7.7e-67 225.5 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|307596348|ref|YP_003902665.1| - 6.5e-11 42.3 0.0 1.5e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 GAD domain GatB_Yqey PF02637.18 gi|307596348|ref|YP_003902665.1| - 1e-10 41.7 0.2 1.2e-09 38.2 0.2 2.2 1 1 0 1 1 1 1 GatB domain YqeY PF09424.10 gi|307596348|ref|YP_003902665.1| - 0.038 14.1 0.2 0.22 11.6 0.0 2.1 2 0 0 2 2 2 0 Yqey-like protein Sugar_tr PF00083.24 gi|307596349|ref|YP_003902666.1| - 6.7e-37 127.4 23.7 8.4e-37 127.1 23.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|307596349|ref|YP_003902666.1| - 8.2e-26 90.8 41.9 9.7e-22 77.4 23.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3501 PF12007.8 gi|307596350|ref|YP_003902667.1| - 2e-49 168.2 0.0 2.4e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) Pre-PUA PF17832.1 gi|307596350|ref|YP_003902667.1| - 0.07 13.8 0.1 0.27 11.9 0.0 1.9 2 0 0 2 2 2 0 Pre-PUA-like domain Rubrerythrin PF02915.17 gi|307596351|ref|YP_003902668.1| - 3e-28 98.9 11.3 1.1e-20 74.4 4.4 2.1 1 1 1 2 2 2 2 Rubrerythrin Ferritin PF00210.24 gi|307596351|ref|YP_003902668.1| - 9.3e-08 32.1 3.6 0.00063 19.7 0.5 2.2 1 1 1 2 2 2 2 Ferritin-like domain Ferritin_2 PF13668.6 gi|307596351|ref|YP_003902668.1| - 0.0014 18.8 0.6 0.0021 18.3 0.4 1.3 1 1 0 1 1 1 1 Ferritin-like domain FUR PF01475.19 gi|307596352|ref|YP_003902669.1| - 3.1e-25 88.7 0.0 3.5e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family DUF2551 PF10826.8 gi|307596352|ref|YP_003902669.1| - 9.4e-05 22.6 0.1 0.00019 21.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2551) HTH_20 PF12840.7 gi|307596352|ref|YP_003902669.1| - 0.001 19.1 0.0 0.0018 18.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|307596352|ref|YP_003902669.1| - 0.0043 17.4 0.0 0.0066 16.8 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|307596352|ref|YP_003902669.1| - 0.011 15.6 0.1 0.026 14.3 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|307596352|ref|YP_003902669.1| - 0.02 14.8 0.0 0.095 12.6 0.0 2.1 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_32 PF13565.6 gi|307596352|ref|YP_003902669.1| - 0.068 13.8 0.0 0.12 13.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.20 gi|307596352|ref|YP_003902669.1| - 0.095 12.6 0.5 1.1 9.2 0.1 2.7 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family Thiolase_N PF00108.23 gi|307596353|ref|YP_003902670.1| - 1.2e-59 201.8 0.0 1.6e-59 201.4 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|307596353|ref|YP_003902670.1| - 7.5e-48 161.2 0.4 2.2e-47 159.7 0.2 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|307596353|ref|YP_003902670.1| - 1.9e-07 31.0 0.3 5.5e-06 26.2 0.1 2.6 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|307596353|ref|YP_003902670.1| - 0.11 12.5 0.1 27 4.8 0.1 3.2 2 1 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain HTH_7 PF02796.15 gi|307596354|ref|YP_003902671.1| - 2.9e-05 24.1 0.0 0.00066 19.7 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_3 PF01381.22 gi|307596354|ref|YP_003902671.1| - 3.5e-05 23.8 0.0 0.0001 22.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_40 PF14493.6 gi|307596354|ref|YP_003902671.1| - 0.00017 22.0 0.4 0.00053 20.4 0.4 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|307596354|ref|YP_003902671.1| - 0.0003 20.2 0.2 0.074 12.6 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|307596354|ref|YP_003902671.1| - 0.00032 20.4 0.0 0.0009 19.0 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|307596354|ref|YP_003902671.1| - 0.00087 18.9 0.1 0.0028 17.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|307596354|ref|YP_003902671.1| - 0.00089 19.0 0.0 0.0021 17.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|307596354|ref|YP_003902671.1| - 0.00096 19.1 0.1 0.012 15.6 0.0 2.6 3 0 0 3 3 3 1 HTH domain HTH_20 PF12840.7 gi|307596354|ref|YP_003902671.1| - 0.002 18.2 0.0 0.013 15.6 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|307596354|ref|YP_003902671.1| - 0.0027 17.2 0.2 0.014 15.0 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 gi|307596354|ref|YP_003902671.1| - 0.0039 16.7 0.3 0.13 11.9 0.0 2.6 3 0 0 3 3 3 1 CodY helix-turn-helix domain HTH_IclR PF09339.10 gi|307596354|ref|YP_003902671.1| - 0.0055 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|307596354|ref|YP_003902671.1| - 0.0083 16.0 0.0 0.019 14.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|307596354|ref|YP_003902671.1| - 0.018 15.0 0.0 0.16 12.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix HTH_10 PF04967.12 gi|307596354|ref|YP_003902671.1| - 0.022 14.6 0.0 0.054 13.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_31 PF13560.6 gi|307596354|ref|YP_003902671.1| - 0.048 14.0 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|307596354|ref|YP_003902671.1| - 0.05 13.2 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_AsnC-type PF13404.6 gi|307596354|ref|YP_003902671.1| - 0.063 13.1 0.2 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 gi|307596354|ref|YP_003902671.1| - 0.079 12.7 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|307596354|ref|YP_003902671.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.6 gi|307596354|ref|YP_003902671.1| - 0.19 11.9 0.8 2.1 8.5 0.0 2.8 3 0 0 3 3 3 0 MerR HTH family regulatory protein ATPase PF06745.13 gi|307596355|ref|YP_003902672.1| - 2.5e-85 285.5 0.4 3.3e-85 285.1 0.0 1.3 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.6 gi|307596355|ref|YP_003902672.1| - 0.00076 19.1 0.3 0.0036 16.9 0.1 2.2 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|307596355|ref|YP_003902672.1| - 0.0016 17.7 0.1 0.0016 17.7 0.1 1.8 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|307596355|ref|YP_003902672.1| - 0.0038 17.3 0.0 0.0087 16.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|307596355|ref|YP_003902672.1| - 0.015 15.0 0.3 0.055 13.2 0.0 2.0 3 0 0 3 3 3 0 AAA domain N6_N4_Mtase PF01555.18 gi|307596355|ref|YP_003902672.1| - 0.021 14.5 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 DNA methylase Rad51 PF08423.11 gi|307596355|ref|YP_003902672.1| - 0.032 13.5 0.0 0.11 11.8 0.0 1.7 2 0 0 2 2 2 0 Rad51 AAA_16 PF13191.6 gi|307596355|ref|YP_003902672.1| - 0.046 14.1 0.1 0.098 13.0 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|307596355|ref|YP_003902672.1| - 0.1 12.9 0.0 0.2 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain TSC22 PF01166.18 gi|307596355|ref|YP_003902672.1| - 0.12 12.7 1.9 10 6.5 0.0 2.5 2 0 0 2 2 2 0 TSC-22/dip/bun family PAXNEB PF05625.11 gi|307596355|ref|YP_003902672.1| - 0.14 11.3 0.0 0.3 10.2 0.0 1.5 2 0 0 2 2 2 0 PAXNEB protein Viral_helicase1 PF01443.18 gi|307596355|ref|YP_003902672.1| - 0.14 11.9 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|307596355|ref|YP_003902672.1| - 0.33 11.3 1.4 0.55 10.6 0.1 1.9 2 1 0 2 2 2 0 AAA domain HU-DNA_bdg PF14848.6 gi|307596356|ref|YP_003902673.1| - 0.018 15.1 0.3 0.047 13.7 0.2 1.7 1 1 1 2 2 2 0 DNA-binding domain DUF2067 PF09840.9 gi|307596356|ref|YP_003902673.1| - 0.023 14.2 1.4 2.4 7.7 0.0 2.6 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2067) DUF3864 PF12980.7 gi|307596356|ref|YP_003902673.1| - 0.024 14.9 0.6 0.45 10.9 0.1 2.4 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3864) CbiA PF01656.23 gi|307596358|ref|YP_003902675.1| - 1.2e-09 38.2 0.3 2.2e-09 37.5 0.3 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|307596358|ref|YP_003902675.1| - 7.7e-09 35.7 0.7 1.2e-08 35.1 0.7 1.3 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|307596358|ref|YP_003902675.1| - 4.1e-06 26.5 0.0 5.8e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|307596358|ref|YP_003902675.1| - 0.00046 19.7 1.3 0.001 18.6 0.2 1.9 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|307596358|ref|YP_003902675.1| - 0.0036 16.5 1.2 0.0053 16.0 0.4 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|307596358|ref|YP_003902675.1| - 0.024 14.1 0.4 0.068 12.6 0.1 1.8 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|307596358|ref|YP_003902675.1| - 0.032 13.5 0.7 0.08 12.2 0.7 1.7 1 1 0 1 1 1 0 ATPase MipZ LEP503 PF15221.6 gi|307596358|ref|YP_003902675.1| - 0.15 12.4 0.1 0.31 11.4 0.1 1.5 1 0 0 1 1 1 0 Lens epithelial cell protein LEP503 T2SSE PF00437.20 gi|307596359|ref|YP_003902676.1| - 4.9e-17 61.9 0.0 1.2e-16 60.6 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|307596359|ref|YP_003902676.1| - 0.0011 19.5 0.2 0.0041 17.6 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|307596359|ref|YP_003902676.1| - 0.0075 16.0 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|307596359|ref|YP_003902676.1| - 0.012 16.2 0.0 0.04 14.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|307596359|ref|YP_003902676.1| - 0.014 15.9 0.0 0.039 14.4 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|307596359|ref|YP_003902676.1| - 0.02 14.9 0.0 0.055 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) TsaE PF02367.17 gi|307596359|ref|YP_003902676.1| - 0.022 14.8 0.0 0.3 11.1 0.0 2.6 3 0 0 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|307596359|ref|YP_003902676.1| - 0.026 14.1 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|307596359|ref|YP_003902676.1| - 0.032 14.0 0.0 0.098 12.4 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activ_2 PF14532.6 gi|307596359|ref|YP_003902676.1| - 0.033 14.3 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain SMC_N PF02463.19 gi|307596359|ref|YP_003902676.1| - 0.049 13.1 0.0 0.093 12.1 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|307596359|ref|YP_003902676.1| - 0.11 11.7 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|307596359|ref|YP_003902676.1| - 0.19 12.0 0.0 0.59 10.4 0.0 1.9 1 0 0 1 1 1 0 AAA domain TetR_C_16 PF17920.1 gi|307596360|ref|YP_003902677.1| - 0.11 12.7 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Peptidase_C25_C PF03785.14 gi|307596361|ref|YP_003902678.1| - 0.0066 16.3 2.8 0.0066 16.3 2.8 2.3 2 1 1 3 3 3 1 Peptidase family C25, C terminal ig-like domain Colicin_M PF14859.6 gi|307596361|ref|YP_003902678.1| - 0.022 13.9 3.3 0.027 13.6 3.3 1.1 1 0 0 1 1 1 0 Colicin M DUF4957 PF16318.5 gi|307596361|ref|YP_003902678.1| - 0.037 14.0 0.3 0.059 13.3 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4957) DUF805 PF05656.14 gi|307596361|ref|YP_003902678.1| - 0.054 13.9 1.0 0.078 13.4 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF805) PATR PF12951.7 gi|307596361|ref|YP_003902678.1| - 0.06 13.5 3.8 0.06 13.5 3.8 3.2 4 0 0 4 4 4 0 Passenger-associated-transport-repeat ComS PF17584.2 gi|307596361|ref|YP_003902678.1| - 1.2 8.7 9.3 1.1 8.9 1.2 3.1 3 0 0 3 3 3 0 Bacillus competence protein S DUF4006 PF13179.6 gi|307596364|ref|YP_003902681.1| - 0.022 14.7 2.0 0.035 14.0 2.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF4006) AcrZ PF10766.9 gi|307596364|ref|YP_003902681.1| - 1.7 8.3 5.9 2.6 7.7 5.9 1.3 1 0 0 1 1 1 0 Multidrug efflux pump-associated protein AcrZ DUF3659 PF12396.8 gi|307596365|ref|YP_003902682.1| - 0.011 15.7 0.1 0.039 13.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) DUF4423 PF14394.6 gi|307596366|ref|YP_003902683.1| - 0.0046 16.7 0.8 0.018 14.8 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) FCD PF07729.12 gi|307596366|ref|YP_003902683.1| - 0.051 14.0 7.4 1.3 9.4 0.1 3.8 3 2 1 4 4 4 0 FCD domain HTH_10 PF04967.12 gi|307596366|ref|YP_003902683.1| - 0.053 13.3 0.6 1.4 8.8 0.1 2.9 3 0 0 3 3 3 0 HTH DNA binding domain HTH_24 PF13412.6 gi|307596366|ref|YP_003902683.1| - 0.12 12.0 1.4 13 5.5 0.0 3.8 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding Complex1_LYR_2 PF13233.6 gi|307596366|ref|YP_003902683.1| - 0.27 12.0 1.6 0.52 11.1 0.1 2.3 3 0 0 3 3 3 0 Complex1_LYR-like PCI PF01399.27 gi|307596366|ref|YP_003902683.1| - 0.39 11.2 9.0 21 5.7 0.6 4.8 4 1 0 4 4 4 0 PCI domain ATP_bind_3 PF01171.20 gi|307596367|ref|YP_003902684.1| - 1.9e-17 63.6 0.0 4e-17 62.6 0.0 1.5 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|307596367|ref|YP_003902684.1| - 0.00031 20.8 0.0 0.00048 20.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.15 gi|307596367|ref|YP_003902684.1| - 0.0018 17.8 0.9 0.0018 17.8 0.9 3.0 3 0 0 3 3 3 1 RecR protein ThiS PF02597.20 gi|307596367|ref|YP_003902684.1| - 0.0024 18.5 0.7 0.05 14.2 0.4 2.5 2 0 0 2 2 2 1 ThiS family C1_2 PF03107.16 gi|307596367|ref|YP_003902684.1| - 0.0044 17.3 1.0 0.38 11.1 0.2 3.2 3 0 0 3 3 3 1 C1 domain ThiS-like PF14453.6 gi|307596367|ref|YP_003902684.1| - 0.0045 17.0 0.2 0.0098 15.9 0.2 1.6 1 0 0 1 1 1 1 ThiS-like ubiquitin tRNA_Me_trans PF03054.16 gi|307596367|ref|YP_003902684.1| - 0.0055 15.5 0.0 0.008 15.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase EF-hand_8 PF13833.6 gi|307596367|ref|YP_003902684.1| - 0.13 12.1 0.0 0.35 10.8 0.0 1.7 1 0 0 1 1 1 0 EF-hand domain pair CdhD PF03599.16 gi|307596367|ref|YP_003902684.1| - 0.19 10.4 0.0 0.31 9.7 0.0 1.2 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit C5HCH PF17982.1 gi|307596367|ref|YP_003902684.1| - 0.31 11.2 3.9 14 5.9 2.5 2.8 2 0 0 2 2 2 0 NSD Cys-His rich domain Vps36-NZF-N PF16988.5 gi|307596367|ref|YP_003902684.1| - 1.2 8.6 3.7 1.8 8.0 0.0 2.7 3 0 0 3 3 3 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-RRN7 PF11781.8 gi|307596367|ref|YP_003902684.1| - 1.4 8.7 6.2 3.8 7.3 0.1 3.0 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-HIT PF04438.16 gi|307596367|ref|YP_003902684.1| - 9.7 6.2 16.6 7.2 6.6 0.2 4.0 3 1 1 4 4 4 0 HIT zinc finger His_Phos_1 PF00300.22 gi|307596368|ref|YP_003902685.1| - 4.3e-08 33.1 0.0 6.7e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) tRNA-synt_1e PF01406.19 gi|307596368|ref|YP_003902685.1| - 0.17 11.2 0.0 0.23 10.8 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain DUF1922 PF09082.10 gi|307596369|ref|YP_003902686.1| - 4.7e-07 30.0 0.4 5.5e-07 29.8 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) TF_Zn_Ribbon PF08271.12 gi|307596369|ref|YP_003902686.1| - 1.2e-05 24.7 1.7 2.3e-05 23.8 1.7 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|307596369|ref|YP_003902686.1| - 0.00019 20.7 3.4 0.00067 19.0 3.4 1.8 1 1 0 1 1 1 1 zinc-ribbon domain Ogr_Delta PF04606.12 gi|307596369|ref|YP_003902686.1| - 0.0014 18.6 0.7 1.2 9.1 0.1 2.2 1 1 1 2 2 2 2 Ogr/Delta-like zinc finger Ribosomal_S27e PF01667.17 gi|307596369|ref|YP_003902686.1| - 0.0017 18.0 0.2 0.0024 17.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S27 CpXC PF14353.6 gi|307596369|ref|YP_003902686.1| - 0.0017 18.4 1.8 0.017 15.1 0.0 2.1 1 1 1 2 2 2 1 CpXC protein zinc_ribbon_2 PF13240.6 gi|307596369|ref|YP_003902686.1| - 0.0029 17.3 5.2 0.037 13.7 5.2 2.2 1 1 0 1 1 1 1 zinc-ribbon domain Mu-like_Com PF10122.9 gi|307596369|ref|YP_003902686.1| - 0.0035 16.8 1.5 0.14 11.6 0.3 2.4 1 1 1 2 2 2 1 Mu-like prophage protein Com zf-ISL3 PF14690.6 gi|307596369|ref|YP_003902686.1| - 0.0045 17.6 6.7 0.48 11.1 0.7 2.8 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.11 gi|307596369|ref|YP_003902686.1| - 0.0047 16.8 0.7 0.007 16.3 0.7 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|307596369|ref|YP_003902686.1| - 0.008 16.2 0.6 0.013 15.6 0.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS91 PF14319.6 gi|307596369|ref|YP_003902686.1| - 0.013 15.5 0.2 0.015 15.4 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain Ribosomal_L37ae PF01780.19 gi|307596369|ref|YP_003902686.1| - 0.018 15.1 0.2 0.02 15.0 0.2 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family RNA_POL_M_15KD PF02150.16 gi|307596369|ref|YP_003902686.1| - 0.028 14.3 0.3 0.054 13.4 0.3 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|307596369|ref|YP_003902686.1| - 0.03 14.5 3.0 0.24 11.6 3.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF3268 PF11672.8 gi|307596369|ref|YP_003902686.1| - 0.036 14.4 1.8 0.39 11.1 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain RecR PF02132.15 gi|307596369|ref|YP_003902686.1| - 0.036 13.6 2.1 0.29 10.8 2.0 2.2 1 1 0 1 1 1 0 RecR protein zf_C2H2_10 PF18414.1 gi|307596369|ref|YP_003902686.1| - 0.037 13.6 1.8 3.2 7.4 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger Zn_ribbon_SprT PF17283.2 gi|307596369|ref|YP_003902686.1| - 0.038 13.9 3.6 0.073 13.0 3.6 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|307596369|ref|YP_003902686.1| - 0.048 13.4 1.1 4.1 7.2 2.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|307596369|ref|YP_003902686.1| - 0.067 13.2 1.7 6.5 6.8 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_4 PF13717.6 gi|307596369|ref|YP_003902686.1| - 0.069 13.1 3.4 2.1 8.3 2.9 2.3 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|307596369|ref|YP_003902686.1| - 0.072 13.2 5.2 0.29 11.2 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|307596369|ref|YP_003902686.1| - 0.078 13.0 5.5 0.66 10.0 5.8 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|307596369|ref|YP_003902686.1| - 0.083 12.9 0.2 0.099 12.7 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYDLN_acid PF09538.10 gi|307596369|ref|YP_003902686.1| - 0.1 13.3 0.4 0.54 11.0 0.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Cys_rich_CPCC PF14206.6 gi|307596369|ref|YP_003902686.1| - 0.17 11.8 2.7 1.6 8.6 3.7 1.8 1 1 1 2 2 2 0 Cysteine-rich CPCC Cys_rich_CPXG PF14255.6 gi|307596369|ref|YP_003902686.1| - 0.17 11.8 2.5 2.2 8.2 0.4 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-H2C2_2 PF13465.6 gi|307596369|ref|YP_003902686.1| - 0.2 12.1 2.3 0.66 10.5 0.4 2.1 2 0 0 2 2 2 0 Zinc-finger double domain YacG PF03884.14 gi|307596369|ref|YP_003902686.1| - 0.22 11.3 1.6 1.9 8.3 2.3 1.9 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG zf_UBZ PF18439.1 gi|307596369|ref|YP_003902686.1| - 0.27 10.9 1.0 9.5 5.9 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF3797 PF12677.7 gi|307596369|ref|YP_003902686.1| - 0.34 10.8 6.1 0.55 10.2 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-Di19 PF05605.12 gi|307596369|ref|YP_003902686.1| - 0.35 11.2 2.7 1.4 9.2 0.2 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Lar_restr_allev PF14354.6 gi|307596369|ref|YP_003902686.1| - 0.37 11.2 2.8 0.71 10.3 2.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-Mss51 PF13824.6 gi|307596369|ref|YP_003902686.1| - 0.9 9.7 4.5 7 6.8 4.7 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1 PF03811.13 gi|307596369|ref|YP_003902686.1| - 1.5 8.6 6.6 7.5 6.4 6.6 2.0 1 1 0 1 1 1 0 InsA N-terminal domain zf-C2HC_2 PF13913.6 gi|307596369|ref|YP_003902686.1| - 3 7.8 7.4 1.5 8.8 1.1 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ribonuc_red_lgC PF02867.15 gi|307596370|ref|YP_003902687.1| - 4.8e-153 510.5 0.0 6e-153 510.1 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|307596370|ref|YP_003902687.1| - 5.2e-24 84.0 0.1 1.3e-23 82.8 0.1 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|307596370|ref|YP_003902687.1| - 0.0018 18.8 0.0 0.0048 17.4 0.0 1.8 1 0 0 1 1 1 1 ATP cone domain AOX PF01786.17 gi|307596370|ref|YP_003902687.1| - 0.0067 16.0 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Alternative oxidase Topoisom_bac PF01131.20 gi|307596371|ref|YP_003902688.1| - 2.1e-81 274.1 0.0 2.8e-81 273.6 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|307596371|ref|YP_003902688.1| - 5.7e-21 74.7 0.0 2.7e-20 72.5 0.0 2.3 2 0 0 2 2 1 1 Toprim domain zf_Rg PF17915.1 gi|307596371|ref|YP_003902688.1| - 2.2e-15 55.8 0.6 5.4e-15 54.5 0.6 1.6 1 0 0 1 1 1 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|307596371|ref|YP_003902688.1| - 8.9e-15 54.9 0.0 2.5e-14 53.4 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|307596371|ref|YP_003902688.1| - 7.6e-06 26.3 0.9 0.043 14.2 0.3 4.4 3 1 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|307596371|ref|YP_003902688.1| - 1.3e-05 25.3 0.0 3.2e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|307596371|ref|YP_003902688.1| - 0.00032 20.3 0.1 0.0016 18.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|307596371|ref|YP_003902688.1| - 0.0012 18.2 3.4 0.053 12.9 0.0 3.8 3 1 2 5 5 5 1 KaiC PIN_2 PF10130.9 gi|307596371|ref|YP_003902688.1| - 0.039 14.2 0.2 0.38 11.0 0.0 2.6 2 0 0 2 2 2 0 PIN domain CbiA PF01656.23 gi|307596371|ref|YP_003902688.1| - 0.047 13.8 0.1 8.8 6.4 0.0 3.4 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain SecA_DEAD PF07517.14 gi|307596371|ref|YP_003902688.1| - 0.05 12.9 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 SecA DEAD-like domain SRP54 PF00448.22 gi|307596371|ref|YP_003902688.1| - 0.097 12.3 0.0 0.38 10.3 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AroM PF07302.11 gi|307596371|ref|YP_003902688.1| - 0.1 12.0 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 AroM protein AAA_30 PF13604.6 gi|307596371|ref|YP_003902688.1| - 0.18 11.5 0.0 0.52 10.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain Fer2_BFD PF04324.15 gi|307596371|ref|YP_003902688.1| - 0.39 11.1 2.3 57 4.2 0.1 4.1 4 0 0 4 4 4 0 BFD-like [2Fe-2S] binding domain Tho1_MOS11_C PF18592.1 gi|307596371|ref|YP_003902688.1| - 0.77 9.6 3.7 2.7 7.8 3.7 2.0 1 0 0 1 1 1 0 Tho1/MOS11 C-terminal domain DUF87 PF01935.17 gi|307596371|ref|YP_003902688.1| - 0.93 9.5 5.2 0.74 9.9 1.7 2.5 2 1 0 2 2 1 0 Helicase HerA, central domain DUF2540 PF10802.8 gi|307596371|ref|YP_003902688.1| - 3.6 7.7 8.2 0.42 10.7 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2540) RIO1 PF01163.22 gi|307596375|ref|YP_003902692.1| - 7.9e-52 175.6 0.0 1.2e-51 175.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|307596375|ref|YP_003902692.1| - 0.0038 17.2 0.0 0.13 12.1 0.1 2.4 2 1 0 2 2 2 1 Phosphotransferase enzyme family Fer4 PF00037.27 gi|307596377|ref|YP_003902694.1| - 8.9e-11 41.1 13.7 6e-06 25.9 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|307596377|ref|YP_003902694.1| - 1.4e-08 35.6 4.6 0.0022 18.9 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|307596377|ref|YP_003902694.1| - 1.7e-08 34.9 8.2 3.3e-08 34.0 8.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307596377|ref|YP_003902694.1| - 2e-07 31.1 29.4 3.4e-05 23.9 10.5 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307596377|ref|YP_003902694.1| - 4.7e-07 29.6 14.7 0.00067 19.6 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307596377|ref|YP_003902694.1| - 6.8e-07 29.0 11.5 0.00057 19.8 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307596377|ref|YP_003902694.1| - 9.5e-07 28.8 9.1 4.8e-05 23.4 11.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|307596377|ref|YP_003902694.1| - 3.4e-06 27.2 8.7 0.014 15.9 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|307596377|ref|YP_003902694.1| - 1.4e-05 25.1 11.1 6.1e-05 23.1 11.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|307596377|ref|YP_003902694.1| - 8.9e-05 22.9 4.4 0.041 14.3 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596377|ref|YP_003902694.1| - 0.0016 19.0 10.9 0.14 12.7 3.3 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|307596377|ref|YP_003902694.1| - 0.0032 18.0 10.0 0.18 12.4 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|307596377|ref|YP_003902694.1| - 0.014 15.6 10.9 10 6.4 10.9 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|307596377|ref|YP_003902694.1| - 1.8 9.4 9.4 6 7.8 2.5 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|307596377|ref|YP_003902694.1| - 6.9 7.9 15.5 9.4 7.4 5.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|307596378|ref|YP_003902695.1| - 1.2e-67 228.0 0.1 1.6e-67 227.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|307596378|ref|YP_003902695.1| - 1.2e-16 60.8 0.1 2.7e-16 59.7 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|307596378|ref|YP_003902695.1| - 0.008 16.1 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|307596379|ref|YP_003902696.1| - 5.7e-35 120.4 0.2 8e-35 119.9 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF2752 PF10825.8 gi|307596379|ref|YP_003902696.1| - 0.22 11.6 0.2 0.22 11.6 0.2 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) POR PF01558.18 gi|307596380|ref|YP_003902697.1| - 8.7e-30 104.1 0.1 1e-29 103.9 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase FlpD PF02662.16 gi|307596381|ref|YP_003902698.1| - 7e-36 122.9 0.2 3.2e-35 120.8 0.1 2.3 2 0 0 2 2 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|307596381|ref|YP_003902698.1| - 1.5e-34 119.6 7.3 8.6e-07 28.5 0.0 5.1 4 1 1 5 5 5 5 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|307596381|ref|YP_003902698.1| - 8e-20 69.8 36.1 4.1e-09 35.9 1.5 4.8 4 0 0 4 4 4 3 4Fe-4S binding domain FAD_oxidored PF12831.7 gi|307596381|ref|YP_003902698.1| - 8.6e-15 55.0 5.2 1.5e-07 31.1 0.6 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|307596381|ref|YP_003902698.1| - 2.8e-13 49.9 4.0 1.4e-06 28.4 0.1 3.5 4 0 0 4 4 2 2 NAD(P)-binding Rossmann-like domain Fer4_6 PF12837.7 gi|307596381|ref|YP_003902698.1| - 1.5e-12 47.0 34.1 7e-06 25.9 1.3 5.0 4 0 0 4 4 4 3 4Fe-4S binding domain HI0933_like PF03486.14 gi|307596381|ref|YP_003902698.1| - 7.3e-12 44.7 10.6 0.00046 19.0 1.4 3.4 2 1 1 3 3 3 3 HI0933-like protein Fer4_7 PF12838.7 gi|307596381|ref|YP_003902698.1| - 8.9e-12 45.4 34.5 1e-07 32.4 12.1 4.5 3 2 2 5 5 4 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596381|ref|YP_003902698.1| - 9.8e-12 45.2 16.1 0.0046 17.5 2.7 4.8 4 0 0 4 4 4 3 4Fe-4S dicluster domain GIDA PF01134.22 gi|307596381|ref|YP_003902698.1| - 1.5e-11 44.0 13.5 4.9e-06 25.9 0.1 4.7 5 0 0 5 5 5 3 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|307596381|ref|YP_003902698.1| - 1.8e-11 44.4 6.7 8e-07 29.5 0.1 4.2 4 1 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|307596381|ref|YP_003902698.1| - 2.9e-11 43.2 6.1 0.036 13.3 2.1 4.9 4 1 1 5 5 5 3 Pyridine nucleotide-disulphide oxidoreductase Fer4_9 PF13187.6 gi|307596381|ref|YP_003902698.1| - 5.4e-11 42.5 30.0 2e-07 31.1 12.0 3.9 2 2 2 4 4 4 4 4Fe-4S dicluster domain DAO PF01266.24 gi|307596381|ref|YP_003902698.1| - 1.2e-10 41.5 9.8 0.00064 19.4 1.0 4.3 5 0 0 5 5 5 3 FAD dependent oxidoreductase Fer4_10 PF13237.6 gi|307596381|ref|YP_003902698.1| - 1.2e-10 41.3 28.1 1.1e-07 31.8 10.6 3.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307596381|ref|YP_003902698.1| - 1.6e-10 41.0 26.1 3.5e-08 33.5 6.8 4.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|307596381|ref|YP_003902698.1| - 1.8e-10 40.5 11.3 3.2e-05 23.2 1.2 3.3 3 0 0 3 3 3 2 FAD binding domain Fer4_16 PF13484.6 gi|307596381|ref|YP_003902698.1| - 2.1e-10 41.4 29.0 0.0018 19.2 1.5 4.5 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain FAD_binding_3 PF01494.19 gi|307596381|ref|YP_003902698.1| - 3.5e-08 33.1 5.6 0.0001 21.7 0.3 2.8 3 0 0 3 3 3 2 FAD binding domain Fer4_2 PF12797.7 gi|307596381|ref|YP_003902698.1| - 1.1e-06 28.3 35.6 0.0013 18.7 1.0 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain AlaDh_PNT_C PF01262.21 gi|307596381|ref|YP_003902698.1| - 3.6e-06 26.4 0.4 0.0015 17.9 0.0 2.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Fer4_8 PF13183.6 gi|307596381|ref|YP_003902698.1| - 3.6e-06 27.3 23.5 0.012 16.0 0.4 4.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Amino_oxidase PF01593.24 gi|307596381|ref|YP_003902698.1| - 6.2e-06 25.8 8.4 0.012 15.0 0.1 4.2 4 0 0 4 4 4 2 Flavin containing amine oxidoreductase Fer4_4 PF12800.7 gi|307596381|ref|YP_003902698.1| - 1.2e-05 25.4 35.5 0.014 15.8 2.9 4.9 4 0 0 4 4 4 3 4Fe-4S binding domain Thi4 PF01946.17 gi|307596381|ref|YP_003902698.1| - 1.8e-05 24.1 2.9 0.052 12.8 0.1 2.6 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.6 gi|307596381|ref|YP_003902698.1| - 0.00042 20.7 0.6 18 5.9 0.0 4.4 5 0 0 5 5 4 0 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|307596381|ref|YP_003902698.1| - 0.00051 19.2 7.8 0.22 10.6 1.6 3.2 2 1 1 3 3 3 2 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|307596381|ref|YP_003902698.1| - 0.0013 18.7 4.0 2 8.4 0.0 3.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding Fer4_15 PF13459.6 gi|307596381|ref|YP_003902698.1| - 0.0024 18.6 22.0 0.16 12.7 0.9 5.3 5 0 0 5 5 4 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|307596381|ref|YP_003902698.1| - 0.014 16.3 4.5 0.014 16.3 4.5 5.5 6 0 0 6 6 4 0 4Fe-4S binding domain TrkA_N PF02254.18 gi|307596381|ref|YP_003902698.1| - 0.03 14.6 0.5 11 6.3 0.1 3.0 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.18 gi|307596381|ref|YP_003902698.1| - 0.032 14.1 2.4 1.4 8.7 0.3 2.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_22 PF17179.4 gi|307596381|ref|YP_003902698.1| - 0.034 15.0 17.8 2.2 9.2 0.1 4.6 4 0 0 4 4 4 0 4Fe-4S dicluster domain UDPG_MGDP_dh_N PF03721.14 gi|307596381|ref|YP_003902698.1| - 0.091 12.3 0.9 18 4.8 0.0 3.2 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|307596381|ref|YP_003902698.1| - 0.11 11.4 6.4 0.032 13.1 0.7 2.2 2 0 0 2 2 2 0 Tryptophan halogenase K_oxygenase PF13434.6 gi|307596381|ref|YP_003902698.1| - 1.5 7.8 3.1 3.1 6.8 0.0 3.0 5 0 0 5 5 3 0 L-lysine 6-monooxygenase (NADPH-requiring) ThiF PF00899.21 gi|307596381|ref|YP_003902698.1| - 1.6 8.0 4.4 5.6 6.2 0.6 2.6 2 0 0 2 2 2 0 ThiF family CCG PF02754.16 gi|307596382|ref|YP_003902699.1| - 4.4e-26 90.9 6.2 7.7e-17 61.3 0.1 2.8 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|307596382|ref|YP_003902699.1| - 4.1e-08 33.6 5.0 4.1e-08 33.6 5.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307596382|ref|YP_003902699.1| - 5.6e-07 29.6 8.2 6.3e-07 29.4 5.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|307596382|ref|YP_003902699.1| - 3.1e-06 27.6 9.9 8.8e-06 26.2 7.6 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307596382|ref|YP_003902699.1| - 6.5e-06 26.2 9.5 1.6e-05 25.0 7.9 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307596382|ref|YP_003902699.1| - 8.2e-05 23.1 8.0 8.2e-05 23.1 8.0 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307596382|ref|YP_003902699.1| - 0.0052 16.6 16.8 0.1 12.4 3.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|307596382|ref|YP_003902699.1| - 0.0086 16.5 7.7 0.44 11.2 1.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|307596382|ref|YP_003902699.1| - 0.15 13.0 15.9 0.46 11.5 13.7 2.6 2 1 0 2 2 1 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|307596382|ref|YP_003902699.1| - 0.53 10.5 15.6 0.93 9.7 12.6 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|307596382|ref|YP_003902699.1| - 0.85 9.8 11.9 0.27 11.4 1.8 3.2 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307596382|ref|YP_003902699.1| - 0.98 9.7 21.2 0.24 11.6 2.4 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|307596382|ref|YP_003902699.1| - 2.4 8.3 12.0 1.5 9.0 1.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|307596382|ref|YP_003902699.1| - 9.9 6.0 8.9 1.8 8.3 1.0 2.4 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ETF PF01012.21 gi|307596383|ref|YP_003902700.1| - 1.4e-32 113.1 0.0 1.9e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|307596383|ref|YP_003902700.1| - 2.4e-19 69.2 0.0 3.8e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|307596384|ref|YP_003902701.1| - 1.2e-44 152.3 0.0 1.6e-44 152.0 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain eIF-1a PF01176.19 gi|307596385|ref|YP_003902702.1| - 5.7e-19 67.7 0.1 7.7e-19 67.3 0.1 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 NMD3 PF04981.13 gi|307596386|ref|YP_003902703.1| - 1.4e-37 129.5 0.2 1.7e-37 129.2 0.2 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|307596386|ref|YP_003902703.1| - 0.00081 19.4 1.4 0.13 12.3 0.8 2.5 2 1 0 2 2 2 1 Double zinc ribbon zf-TFIIB PF13453.6 gi|307596386|ref|YP_003902703.1| - 0.0031 16.8 2.3 0.48 9.8 0.3 2.7 2 0 0 2 2 2 2 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|307596386|ref|YP_003902703.1| - 0.006 16.7 4.2 0.34 11.1 0.7 3.4 2 1 1 3 3 3 2 Zinc ribbon domain zf-RING_7 PF02591.15 gi|307596386|ref|YP_003902703.1| - 0.011 16.0 0.2 0.011 16.0 0.2 2.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-ACC PF17848.1 gi|307596386|ref|YP_003902703.1| - 0.011 15.8 0.0 0.011 15.8 0.0 3.0 4 0 0 4 4 2 0 Acetyl-coA carboxylase zinc finger domain Ribosomal_L37ae PF01780.19 gi|307596386|ref|YP_003902703.1| - 0.045 13.8 0.5 0.14 12.2 0.0 2.0 2 0 0 2 2 2 0 Ribosomal L37ae protein family zf-ribbon_3 PF13248.6 gi|307596386|ref|YP_003902703.1| - 0.31 10.5 0.1 0.31 10.5 0.1 3.1 4 0 0 4 4 4 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|307596386|ref|YP_003902703.1| - 0.6 10.1 5.2 3.7 7.6 0.4 3.1 2 1 1 3 3 3 0 zinc-ribbons Prok-RING_1 PF14446.6 gi|307596386|ref|YP_003902703.1| - 0.71 9.8 8.7 14 5.7 2.3 3.3 2 1 1 3 3 3 0 Prokaryotic RING finger family 1 zf-CCHC_5 PF14787.6 gi|307596386|ref|YP_003902703.1| - 4.1 7.2 11.0 3.2 7.6 0.3 3.2 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger Trypsin_2 PF13365.6 gi|307596387|ref|YP_003902704.1| - 2.2e-33 116.3 0.6 3.4e-33 115.7 0.6 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|307596387|ref|YP_003902704.1| - 4.3e-17 62.7 0.0 7.7e-17 61.8 0.0 1.4 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|307596387|ref|YP_003902704.1| - 1.9e-10 40.9 0.0 4.1e-10 39.9 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|307596387|ref|YP_003902704.1| - 2.5e-10 40.0 1.0 4.2e-10 39.3 0.2 2.0 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|307596387|ref|YP_003902704.1| - 1.7e-07 31.5 0.1 7.8e-07 29.4 0.0 2.1 2 0 0 2 2 2 1 PDZ domain Peptidase_S32 PF05579.13 gi|307596387|ref|YP_003902704.1| - 0.0044 16.3 0.8 0.45 9.7 0.1 2.2 2 0 0 2 2 2 2 Equine arteritis virus serine endopeptidase S32 Peptidase_S46 PF10459.9 gi|307596387|ref|YP_003902704.1| - 0.1 11.3 0.6 0.15 10.7 0.6 1.1 1 0 0 1 1 1 0 Peptidase S46 Peptidase_S29 PF02907.15 gi|307596387|ref|YP_003902704.1| - 0.13 12.0 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease Phosphodiest PF01663.22 gi|307596388|ref|YP_003902705.1| - 1.4e-19 70.9 2.3 1.9e-17 63.9 2.3 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|307596388|ref|YP_003902705.1| - 4e-06 27.1 0.2 0.0029 17.7 0.1 2.3 2 0 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.18 gi|307596388|ref|YP_003902705.1| - 0.016 14.6 0.4 0.026 13.9 0.0 1.5 2 0 0 2 2 2 0 Metalloenzyme superfamily Sulfatase PF00884.23 gi|307596388|ref|YP_003902705.1| - 0.041 13.3 0.1 3 7.1 0.0 2.1 2 0 0 2 2 2 0 Sulfatase SRP54 PF00448.22 gi|307596389|ref|YP_003902706.1| - 4.8e-63 212.4 0.0 7.2e-63 211.8 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|307596389|ref|YP_003902706.1| - 4.9e-26 91.2 1.9 1.1e-24 87.0 0.7 2.5 1 1 1 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|307596389|ref|YP_003902706.1| - 5.1e-12 45.8 0.2 5.1e-12 45.8 0.2 3.0 4 0 0 4 4 3 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.6 gi|307596389|ref|YP_003902706.1| - 4.1e-08 33.6 0.9 4.4e-07 30.3 0.0 2.8 3 0 0 3 3 3 1 AAA domain CbiA PF01656.23 gi|307596389|ref|YP_003902706.1| - 3.8e-06 27.0 0.0 7.5e-06 26.0 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|307596389|ref|YP_003902706.1| - 0.00023 20.8 0.2 0.0016 18.0 0.2 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|307596389|ref|YP_003902706.1| - 0.00044 20.0 0.0 0.0015 18.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|307596389|ref|YP_003902706.1| - 0.0018 18.4 0.0 0.0048 17.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|307596389|ref|YP_003902706.1| - 0.0039 17.3 0.0 0.014 15.5 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|307596389|ref|YP_003902706.1| - 0.0082 15.4 0.0 0.023 14.0 0.0 1.7 1 1 1 2 2 2 1 Zeta toxin MobB PF03205.14 gi|307596389|ref|YP_003902706.1| - 0.01 15.7 0.0 0.043 13.7 0.0 2.1 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B G-alpha PF00503.20 gi|307596389|ref|YP_003902706.1| - 0.011 14.9 0.0 0.024 13.8 0.0 1.8 1 1 0 1 1 1 0 G-protein alpha subunit AAA_16 PF13191.6 gi|307596389|ref|YP_003902706.1| - 0.013 15.8 0.1 0.048 14.1 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|307596389|ref|YP_003902706.1| - 0.021 14.4 1.1 1.4 8.4 0.3 3.0 2 1 0 2 2 2 0 AAA domain VirC1 PF07015.11 gi|307596389|ref|YP_003902706.1| - 0.022 14.1 0.0 0.15 11.3 0.0 2.3 2 1 1 3 3 3 0 VirC1 protein AAA_5 PF07728.14 gi|307596389|ref|YP_003902706.1| - 0.024 14.6 0.0 0.069 13.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|307596389|ref|YP_003902706.1| - 0.03 14.1 0.0 1.3 8.8 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|307596389|ref|YP_003902706.1| - 0.046 14.2 0.1 0.38 11.3 0.0 2.4 2 1 0 2 2 2 0 ABC transporter ResIII PF04851.15 gi|307596389|ref|YP_003902706.1| - 0.046 13.7 0.9 3.2 7.7 0.1 2.9 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_31 PF13614.6 gi|307596389|ref|YP_003902706.1| - 0.049 13.5 0.9 0.18 11.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|307596389|ref|YP_003902706.1| - 0.076 13.4 1.7 0.24 11.8 0.2 2.6 2 1 0 2 2 1 0 AAA domain AAA_8 PF12780.7 gi|307596389|ref|YP_003902706.1| - 0.11 11.9 0.4 0.66 9.3 0.0 2.4 3 0 0 3 3 3 0 P-loop containing dynein motor region D4 AAA_28 PF13521.6 gi|307596389|ref|YP_003902706.1| - 0.16 12.2 0.3 0.47 10.7 0.3 2.1 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|307596390|ref|YP_003902707.1| - 8.2e-62 208.6 0.0 9.7e-62 208.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|307596390|ref|YP_003902707.1| - 2.5e-05 23.9 0.0 3.5e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain Caleosin PF05042.13 gi|307596390|ref|YP_003902707.1| - 0.00058 19.8 0.3 0.0012 18.9 0.0 1.6 2 0 0 2 2 2 1 Caleosin related protein AAA_22 PF13401.6 gi|307596390|ref|YP_003902707.1| - 0.00078 19.7 0.0 0.0016 18.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|307596390|ref|YP_003902707.1| - 0.0011 18.3 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|307596390|ref|YP_003902707.1| - 0.0073 15.0 0.2 0.12 11.0 0.1 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|307596390|ref|YP_003902707.1| - 0.018 14.3 0.0 0.032 13.5 0.0 1.3 1 0 0 1 1 1 0 Rad51 DUF2075 PF09848.9 gi|307596390|ref|YP_003902707.1| - 0.049 12.9 0.0 0.071 12.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|307596390|ref|YP_003902707.1| - 0.1 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|307596390|ref|YP_003902707.1| - 0.21 11.3 0.0 0.51 10.1 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|307596391|ref|YP_003902708.1| - 1.2e-11 44.2 0.0 2.2e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|307596391|ref|YP_003902708.1| - 2.3e-05 24.9 0.0 0.00011 22.8 0.0 2.1 2 1 1 3 3 3 1 AAA domain AAA PF00004.29 gi|307596391|ref|YP_003902708.1| - 0.00077 19.9 0.0 0.0018 18.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|307596391|ref|YP_003902708.1| - 0.00084 19.5 0.0 0.026 14.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|307596391|ref|YP_003902708.1| - 0.00095 18.9 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|307596391|ref|YP_003902708.1| - 0.0015 18.4 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|307596391|ref|YP_003902708.1| - 0.0016 18.8 0.0 0.0035 17.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|307596391|ref|YP_003902708.1| - 0.0035 17.3 0.0 0.0086 16.1 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|307596391|ref|YP_003902708.1| - 0.0035 17.3 0.0 0.01 15.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.17 gi|307596391|ref|YP_003902708.1| - 0.0048 16.6 0.0 0.016 14.9 0.0 1.9 2 0 0 2 2 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|307596391|ref|YP_003902708.1| - 0.0062 16.8 0.0 0.017 15.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.6 gi|307596391|ref|YP_003902708.1| - 0.0077 15.8 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|307596391|ref|YP_003902708.1| - 0.0089 15.8 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|307596391|ref|YP_003902708.1| - 0.01 15.9 0.0 0.024 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|307596391|ref|YP_003902708.1| - 0.013 15.1 0.0 0.063 12.9 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|307596391|ref|YP_003902708.1| - 0.014 15.7 0.0 0.067 13.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|307596391|ref|YP_003902708.1| - 0.014 15.2 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|307596391|ref|YP_003902708.1| - 0.019 15.3 0.0 0.12 12.8 0.0 2.1 2 0 0 2 2 2 0 RNA helicase KH_1 PF00013.29 gi|307596391|ref|YP_003902708.1| - 0.019 14.7 0.4 0.067 13.0 0.1 2.2 2 0 0 2 2 1 0 KH domain Zeta_toxin PF06414.12 gi|307596391|ref|YP_003902708.1| - 0.022 14.0 0.1 0.041 13.2 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|307596391|ref|YP_003902708.1| - 0.027 14.2 0.2 0.066 12.9 0.1 1.6 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.6 gi|307596391|ref|YP_003902708.1| - 0.029 14.7 0.0 0.05 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|307596391|ref|YP_003902708.1| - 0.031 14.2 0.0 0.071 13.0 0.0 1.6 1 0 0 1 1 1 0 NTPase KTI12 PF08433.10 gi|307596391|ref|YP_003902708.1| - 0.038 13.4 0.0 0.16 11.4 0.0 2.0 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ABC_tran PF00005.27 gi|307596391|ref|YP_003902708.1| - 0.04 14.4 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|307596391|ref|YP_003902708.1| - 0.042 13.8 0.1 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.15 gi|307596391|ref|YP_003902708.1| - 0.047 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase PF06745.13 gi|307596391|ref|YP_003902708.1| - 0.069 12.5 0.1 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 KaiC Ins134_P3_kin PF05770.11 gi|307596391|ref|YP_003902708.1| - 0.073 12.6 0.4 0.71 9.3 0.1 2.2 2 0 0 2 2 2 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain AAA_17 PF13207.6 gi|307596391|ref|YP_003902708.1| - 0.078 13.4 0.0 0.26 11.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain DnaB_C PF03796.15 gi|307596391|ref|YP_003902708.1| - 0.089 12.1 0.0 0.21 10.9 0.0 1.6 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain Mg_chelatase PF01078.21 gi|307596391|ref|YP_003902708.1| - 0.12 11.8 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|307596391|ref|YP_003902708.1| - 0.13 12.3 0.0 0.79 9.7 0.0 1.9 1 1 0 2 2 2 0 Type III restriction enzyme, res subunit MeaB PF03308.16 gi|307596391|ref|YP_003902708.1| - 0.13 11.2 0.0 0.24 10.3 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 gi|307596391|ref|YP_003902708.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.6 gi|307596391|ref|YP_003902708.1| - 0.14 11.9 0.0 0.39 10.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.6 gi|307596391|ref|YP_003902708.1| - 0.18 12.0 0.0 0.36 11.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain GHMP_kinases_C PF08544.13 gi|307596392|ref|YP_003902709.1| - 2.6e-15 56.5 0.6 2.6e-15 56.5 0.6 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|307596392|ref|YP_003902709.1| - 1.9e-14 53.6 0.1 6.6e-14 51.9 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|307596392|ref|YP_003902709.1| - 1.6e-05 24.3 1.3 7.5e-05 22.2 0.4 2.3 2 0 0 2 2 2 1 Galactokinase galactose-binding signature RuvB_C PF05491.13 gi|307596392|ref|YP_003902709.1| - 0.079 12.8 0.1 0.21 11.5 0.1 1.7 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Phage_holin_3_6 PF07332.11 gi|307596394|ref|YP_003902711.1| - 0.094 12.8 0.9 0.11 12.5 0.9 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III RseC_MucC PF04246.12 gi|307596394|ref|YP_003902711.1| - 1.3 8.9 5.7 1.6 8.7 5.7 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC MFS_1 PF07690.16 gi|307596395|ref|YP_003902712.1| - 5.1e-32 111.2 52.8 6.9e-25 87.7 31.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|307596395|ref|YP_003902712.1| - 1.1e-05 24.5 5.3 1.1e-05 24.5 5.3 3.0 2 1 1 3 3 3 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|307596395|ref|YP_003902712.1| - 7.8e-05 21.7 30.2 0.0016 17.4 30.2 2.2 1 1 0 1 1 1 1 MFS_1 like family Fer4_6 PF12837.7 gi|307596397|ref|YP_003902714.1| - 2e-06 27.6 12.5 0.0039 17.2 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|307596397|ref|YP_003902714.1| - 1.8e-05 24.5 11.1 0.0019 18.2 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|307596397|ref|YP_003902714.1| - 0.0017 18.1 12.3 0.0022 17.7 3.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|307596397|ref|YP_003902714.1| - 0.022 14.9 12.6 0.39 10.9 12.7 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|307596397|ref|YP_003902714.1| - 0.043 14.0 10.4 0.19 11.9 10.8 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307596397|ref|YP_003902714.1| - 0.11 13.1 9.7 1.7 9.3 10.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307596397|ref|YP_003902714.1| - 0.14 12.3 12.0 0.81 9.9 12.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Big_1 PF02369.16 gi|307596398|ref|YP_003902715.1| - 1.9 8.5 6.2 1.6 8.8 2.5 3.0 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) PPC PF04151.15 gi|307596398|ref|YP_003902715.1| - 6.7 7.9 12.7 1.1e+02 4.0 9.3 4.0 2 1 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain ABC2_membrane PF01061.24 gi|307596400|ref|YP_003902717.1| - 2.1e-13 50.2 25.4 2.1e-13 50.2 25.4 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|307596400|ref|YP_003902717.1| - 0.00019 20.7 28.3 0.00019 20.7 28.3 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|307596401|ref|YP_003902718.1| - 6.5e-25 88.2 0.0 1.2e-24 87.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|307596401|ref|YP_003902718.1| - 5.5e-13 49.4 0.7 2e-08 34.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|307596401|ref|YP_003902718.1| - 0.0002 22.0 0.1 0.00046 20.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA PF00004.29 gi|307596401|ref|YP_003902718.1| - 0.0011 19.4 0.0 0.023 15.1 0.0 2.7 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) MukB PF04310.12 gi|307596401|ref|YP_003902718.1| - 0.005 16.7 0.0 0.0081 16.0 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_24 PF13479.6 gi|307596401|ref|YP_003902718.1| - 0.008 15.9 0.3 0.3 10.8 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|307596401|ref|YP_003902718.1| - 0.01 15.6 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|307596401|ref|YP_003902718.1| - 0.017 14.7 0.1 0.028 14.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|307596401|ref|YP_003902718.1| - 0.046 14.0 0.0 0.16 12.2 0.0 1.9 2 0 0 2 2 1 0 AAA domain Rad17 PF03215.15 gi|307596401|ref|YP_003902718.1| - 0.047 13.6 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|307596401|ref|YP_003902718.1| - 0.049 14.0 0.1 0.11 12.9 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|307596401|ref|YP_003902718.1| - 0.074 13.0 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|307596401|ref|YP_003902718.1| - 0.098 12.4 0.1 0.69 9.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|307596401|ref|YP_003902718.1| - 0.1 13.1 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|307596401|ref|YP_003902718.1| - 0.13 12.0 0.0 3.9 7.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.19 gi|307596401|ref|YP_003902718.1| - 0.16 11.4 0.0 17 4.8 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|307596401|ref|YP_003902718.1| - 0.22 12.1 0.9 0.81 10.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain KH_5 PF13184.6 gi|307596402|ref|YP_003902719.1| - 0.00031 20.8 0.4 0.0035 17.4 0.3 2.2 2 0 0 2 2 2 1 NusA-like KH domain Prominin PF05478.11 gi|307596402|ref|YP_003902719.1| - 0.061 11.3 0.1 0.071 11.1 0.1 1.1 1 0 0 1 1 1 0 Prominin Terminase_2 PF03592.16 gi|307596402|ref|YP_003902719.1| - 0.15 12.5 0.1 0.18 12.2 0.1 1.3 1 0 0 1 1 1 0 Terminase small subunit tRNA-synt_2 PF00152.20 gi|307596403|ref|YP_003902720.1| - 3.7e-85 285.8 0.1 4.4e-85 285.5 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|307596403|ref|YP_003902720.1| - 1.2e-09 38.0 0.5 2.3e-09 37.1 0.5 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|307596403|ref|YP_003902720.1| - 0.0049 16.4 0.3 0.29 10.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) B12-binding_2 PF02607.17 gi|307596403|ref|YP_003902720.1| - 0.07 13.6 0.1 0.25 11.8 0.1 1.9 1 0 0 1 1 1 0 B12 binding domain HET-S PF17108.5 gi|307596403|ref|YP_003902720.1| - 0.25 11.1 0.4 0.42 10.4 0.4 1.4 1 0 0 1 1 1 0 N-terminal small S protein of HET, non-prionic EamA PF00892.20 gi|307596404|ref|YP_003902721.1| - 2.3e-08 34.3 28.3 4.9e-06 26.7 8.0 2.4 1 1 0 2 2 2 2 EamA-like transporter family Sugar_tr PF00083.24 gi|307596405|ref|YP_003902722.1| - 2.8e-21 75.9 32.8 2.8e-21 75.9 32.8 2.5 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|307596405|ref|YP_003902722.1| - 2e-14 53.3 36.3 2e-14 53.3 36.3 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_Mycoplasma PF07672.13 gi|307596405|ref|YP_003902722.1| - 0.015 14.6 1.6 0.015 14.6 1.6 4.4 3 1 1 5 5 5 0 Mycoplasma MFS transporter Ribosomal_L5e PF17144.4 gi|307596406|ref|YP_003902723.1| - 3.3e-38 131.2 5.0 2.6e-25 89.3 2.8 2.4 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|307596406|ref|YP_003902723.1| - 9.7e-11 42.5 0.3 9.7e-11 42.5 0.3 1.7 2 0 0 2 2 2 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|307596406|ref|YP_003902723.1| - 1.6e-07 31.7 0.2 2.6e-07 31.0 0.2 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|307596407|ref|YP_003902724.1| - 4.6e-50 169.4 4.5 5.2e-50 169.3 4.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HycI PF01750.18 gi|307596409|ref|YP_003902726.1| - 9.2e-06 25.5 0.0 1.2e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.19 gi|307596410|ref|YP_003902727.1| - 8.3e-46 156.9 2.5 7e-26 91.2 3.1 4.0 1 1 0 2 2 2 2 Nickel-dependent hydrogenase PPO1_DWL PF12142.8 gi|307596411|ref|YP_003902728.1| - 0.46 10.3 4.3 3.6 7.4 0.3 2.8 2 1 1 3 3 3 0 Polyphenol oxidase middle domain HycI PF01750.18 gi|307596412|ref|YP_003902729.1| - 0.00074 19.3 0.1 0.0055 16.5 0.1 1.9 1 1 0 1 1 1 1 Hydrogenase maturation protease Flavi_glycop_C PF02832.16 gi|307596412|ref|YP_003902729.1| - 0.16 12.2 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Flavivirus glycoprotein, immunoglobulin-like domain Med22 PF06179.12 gi|307596413|ref|YP_003902730.1| - 0.00088 19.5 1.5 0.001 19.2 1.5 1.3 1 1 0 1 1 1 1 Surfeit locus protein 5 subunit 22 of Mediator complex HTH_IclR PF09339.10 gi|307596414|ref|YP_003902731.1| - 0.0018 18.0 0.0 0.0037 17.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|307596414|ref|YP_003902731.1| - 0.0033 17.3 0.1 0.0096 15.8 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|307596414|ref|YP_003902731.1| - 0.03 14.4 0.3 0.26 11.4 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_45 PF14947.6 gi|307596414|ref|YP_003902731.1| - 0.047 13.7 0.6 0.12 12.4 0.6 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|307596414|ref|YP_003902731.1| - 0.049 13.2 0.0 0.15 11.6 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding T3SS_needle_F PF09392.10 gi|307596414|ref|YP_003902731.1| - 0.051 13.8 0.3 0.097 12.9 0.3 1.4 1 0 0 1 1 1 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF NiFe_hyd_SSU_C PF14720.6 gi|307596415|ref|YP_003902732.1| - 7.1e-24 84.0 2.9 1.3e-23 83.2 2.9 1.4 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|307596415|ref|YP_003902732.1| - 5.6e-17 61.8 0.0 1.7e-16 60.2 0.0 1.9 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|307596415|ref|YP_003902732.1| - 0.0042 16.9 2.7 0.0042 16.9 2.7 4.1 5 0 0 5 5 5 1 TAT (twin-arginine translocation) pathway signal sequence DUF4405 PF14358.6 gi|307596416|ref|YP_003902733.1| - 0.0034 17.9 6.5 0.0034 17.9 6.5 3.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) CrgA PF06781.12 gi|307596416|ref|YP_003902733.1| - 0.039 14.0 0.9 0.19 11.8 0.9 2.3 1 0 0 1 1 1 0 Cell division protein CrgA Phage_holin_3_6 PF07332.11 gi|307596417|ref|YP_003902734.1| - 0.026 14.6 2.2 0.033 14.2 2.2 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III CitMHS PF03600.16 gi|307596417|ref|YP_003902734.1| - 0.49 9.5 4.9 0.56 9.3 4.9 1.1 1 0 0 1 1 1 0 Citrate transporter DUF2207 PF09972.9 gi|307596417|ref|YP_003902734.1| - 2.7 6.7 3.8 2.9 6.6 3.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4118 PF13493.6 gi|307596417|ref|YP_003902734.1| - 4.3 7.2 11.2 9 6.1 11.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) HypD PF01924.16 gi|307596418|ref|YP_003902735.1| - 2.6e-120 401.7 0.0 3.1e-120 401.5 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.6 gi|307596418|ref|YP_003902735.1| - 0.12 12.2 1.5 0.18 11.7 0.0 2.0 2 0 0 2 2 2 0 zf-RING of BARD1-type protein HupF_HypC PF01455.18 gi|307596419|ref|YP_003902736.1| - 1.2e-13 50.9 1.1 1.8e-13 50.4 0.4 1.6 2 0 0 2 2 2 1 HupF/HypC family ArgJ PF01960.18 gi|307596419|ref|YP_003902736.1| - 0.12 11.0 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 ArgJ family Sua5_yciO_yrdC PF01300.18 gi|307596420|ref|YP_003902737.1| - 1.5e-45 154.9 0.0 2.2e-45 154.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|307596420|ref|YP_003902737.1| - 1.7e-26 91.6 15.1 8e-14 51.1 4.3 2.5 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|307596420|ref|YP_003902737.1| - 2.8e-26 92.2 0.0 5.5e-26 91.2 0.0 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|307596420|ref|YP_003902737.1| - 1.7e-19 70.0 0.2 3.5e-19 69.0 0.2 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|307596420|ref|YP_003902737.1| - 0.001 18.8 0.0 0.061 13.0 0.0 2.1 2 0 0 2 2 2 1 Glycoprotease family zf-C2H2_4 PF13894.6 gi|307596420|ref|YP_003902737.1| - 0.25 12.3 0.9 57 5.0 0.1 3.1 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.7 gi|307596420|ref|YP_003902737.1| - 2.5 8.2 4.2 35 4.5 4.3 2.6 1 1 0 1 1 1 0 Double zinc ribbon AIRS_C PF02769.22 gi|307596421|ref|YP_003902738.1| - 7.5e-20 71.6 0.0 1.2e-19 70.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|307596421|ref|YP_003902738.1| - 1.1e-13 51.6 1.0 1.7e-13 51.0 0.2 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Lactamase_B_3 PF13483.6 gi|307596422|ref|YP_003902739.1| - 8.9e-19 68.0 0.1 1.1e-18 67.7 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|307596422|ref|YP_003902739.1| - 7.6e-10 38.6 0.1 1.5e-09 37.7 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PDZ_2 PF13180.6 gi|307596422|ref|YP_003902739.1| - 0.048 14.0 0.3 1.6 9.1 0.1 2.5 1 1 1 2 2 2 0 PDZ domain NicO PF03824.16 gi|307596423|ref|YP_003902740.1| - 4.3e-92 308.4 10.5 4.3e-92 308.4 10.5 1.3 2 0 0 2 2 2 1 High-affinity nickel-transport protein DUF364 PF04016.12 gi|307596424|ref|YP_003902741.1| - 1.5e-27 96.0 0.0 2.2e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|307596424|ref|YP_003902741.1| - 1.2e-12 47.9 0.1 2.7e-12 46.7 0.1 1.6 1 0 0 1 1 1 1 Putative heavy-metal chelation PaREP1 PF05942.11 gi|307596425|ref|YP_003902742.1| - 2e-24 85.7 2.5 2.6e-24 85.4 2.5 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family MYEOV2 PF15004.6 gi|307596425|ref|YP_003902742.1| - 0.036 14.5 0.1 0.07 13.6 0.1 1.4 1 0 0 1 1 1 0 Myeloma-overexpressed-like HEPN PF05168.14 gi|307596425|ref|YP_003902742.1| - 0.1 12.7 1.7 0.19 11.9 1.7 1.4 1 0 0 1 1 1 0 HEPN domain NikR_C PF08753.11 gi|307596426|ref|YP_003902743.1| - 7e-22 77.4 3.0 9.8e-22 76.9 3.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|307596426|ref|YP_003902743.1| - 0.0045 16.9 2.3 0.0084 16.0 0.4 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family AMP-binding PF00501.28 gi|307596427|ref|YP_003902744.1| - 9.7e-45 152.9 0.1 8.2e-28 97.1 0.3 2.1 2 0 0 2 2 2 2 AMP-binding enzyme AMP-binding_C PF13193.6 gi|307596427|ref|YP_003902744.1| - 4.4e-10 40.4 0.5 7.4e-09 36.5 0.2 2.6 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|307596427|ref|YP_003902744.1| - 2.6e-09 36.8 0.3 4.9e-09 36.0 0.3 1.5 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus POTRA_1 PF08478.10 gi|307596427|ref|YP_003902744.1| - 0.035 14.4 0.0 0.089 13.1 0.0 1.6 1 0 0 1 1 1 0 POTRA domain, FtsQ-type HypA PF01155.19 gi|307596428|ref|YP_003902745.1| - 3.5e-24 85.0 0.1 4.1e-24 84.8 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|307596428|ref|YP_003902745.1| - 1.4e-05 24.5 0.6 0.059 12.9 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-IS66 PF13005.7 gi|307596428|ref|YP_003902745.1| - 0.0041 17.5 1.6 2.5 8.6 0.1 2.5 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 zf-FPG_IleRS PF06827.14 gi|307596428|ref|YP_003902745.1| - 0.0076 16.1 2.1 0.21 11.5 0.1 2.3 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS Lar_restr_allev PF14354.6 gi|307596428|ref|YP_003902745.1| - 0.0087 16.4 0.1 2.5 8.5 0.1 2.2 2 0 0 2 2 2 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|307596428|ref|YP_003902745.1| - 0.011 15.1 0.3 2.2 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF4771 PF15995.5 gi|307596428|ref|YP_003902745.1| - 0.013 15.7 0.1 0.02 15.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4771) zinc_ribbon_4 PF13717.6 gi|307596428|ref|YP_003902745.1| - 0.017 15.0 0.6 3.1 7.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|307596428|ref|YP_003902745.1| - 0.037 13.5 0.4 0.78 9.2 0.0 2.4 2 0 0 2 2 2 0 Mu-like prophage protein Com DUF35_N PF12172.8 gi|307596428|ref|YP_003902745.1| - 0.055 13.4 3.9 0.39 10.6 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|307596428|ref|YP_003902745.1| - 0.099 12.4 3.7 5.1 7.0 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|307596428|ref|YP_003902745.1| - 0.16 12.1 0.2 11 6.2 0.0 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.16 gi|307596428|ref|YP_003902745.1| - 0.17 11.8 0.7 3.8 7.5 0.0 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|307596428|ref|YP_003902745.1| - 0.17 12.0 3.4 3 8.0 3.3 2.2 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|307596428|ref|YP_003902745.1| - 0.22 11.6 1.4 18 5.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.6 gi|307596428|ref|YP_003902745.1| - 0.41 10.4 3.2 3.7 7.4 0.6 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zn-ribbon_14 PF16503.5 gi|307596428|ref|YP_003902745.1| - 1.3 8.6 4.1 2.7 7.6 0.5 2.3 2 0 0 2 2 2 0 Zinc-ribbon Rubredoxin_2 PF18073.1 gi|307596428|ref|YP_003902745.1| - 2.7 7.8 5.3 15 5.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain ParA PF10609.9 gi|307596429|ref|YP_003902746.1| - 1.6e-42 145.7 0.1 2.1e-42 145.3 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|307596429|ref|YP_003902746.1| - 5.5e-11 42.6 0.0 1.4e-10 41.3 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|307596429|ref|YP_003902746.1| - 3.4e-08 33.1 0.1 3.3e-06 26.5 0.1 2.9 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|307596429|ref|YP_003902746.1| - 6.4e-07 29.5 1.1 4.8e-06 26.6 1.1 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|307596429|ref|YP_003902746.1| - 0.00068 19.0 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Zeta_toxin PF06414.12 gi|307596429|ref|YP_003902746.1| - 0.015 14.5 0.0 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 gi|307596429|ref|YP_003902746.1| - 0.016 15.6 0.0 0.028 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|307596429|ref|YP_003902746.1| - 0.017 14.7 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Fer4_NifH PF00142.18 gi|307596429|ref|YP_003902746.1| - 0.041 13.3 0.1 0.29 10.5 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ADH_N PF08240.12 gi|307596430|ref|YP_003902747.1| - 2.6e-27 94.9 0.3 4.9e-27 94.0 0.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|307596430|ref|YP_003902747.1| - 3.5e-25 88.5 0.4 5.9e-25 87.7 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|307596430|ref|YP_003902747.1| - 6.5e-12 46.7 0.0 1.1e-11 45.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|307596430|ref|YP_003902747.1| - 0.00023 21.0 0.1 0.00095 19.0 0.1 2.0 2 0 0 2 2 2 1 N-terminal domain of oxidoreductase NmrA PF05368.13 gi|307596430|ref|YP_003902747.1| - 0.0025 17.4 0.6 0.0037 16.9 0.6 1.3 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|307596430|ref|YP_003902747.1| - 0.0052 16.3 0.2 0.0071 15.8 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family AlaDh_PNT_C PF01262.21 gi|307596430|ref|YP_003902747.1| - 0.011 15.0 2.0 0.018 14.4 2.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.21 gi|307596430|ref|YP_003902747.1| - 0.02 14.6 0.2 0.03 14.0 0.2 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_10 PF13460.6 gi|307596430|ref|YP_003902747.1| - 0.027 14.3 0.6 0.041 13.8 0.6 1.3 1 0 0 1 1 1 0 NAD(P)H-binding DapB_N PF01113.20 gi|307596430|ref|YP_003902747.1| - 0.071 13.2 0.1 0.69 10.0 0.2 2.3 3 0 0 3 3 3 0 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|307596430|ref|YP_003902747.1| - 0.12 12.8 0.1 24 5.4 0.2 2.4 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain TauE PF01925.19 gi|307596431|ref|YP_003902748.1| - 8.4e-29 100.9 29.8 9.7e-29 100.7 29.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Pyr_redox_2 PF07992.14 gi|307596432|ref|YP_003902749.1| - 6.7e-31 107.6 1.6 9.5e-31 107.1 1.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|307596432|ref|YP_003902749.1| - 6e-16 58.6 0.4 7.8e-11 41.8 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|307596432|ref|YP_003902749.1| - 7.5e-09 35.2 10.0 3.1e-08 33.1 1.9 3.7 3 1 1 4 4 4 1 FAD binding domain DAO PF01266.24 gi|307596432|ref|YP_003902749.1| - 1.9e-08 34.3 3.3 2.1e-06 27.6 2.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|307596432|ref|YP_003902749.1| - 7e-07 28.9 0.3 7e-07 28.9 0.3 2.3 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|307596432|ref|YP_003902749.1| - 1.2e-06 27.9 4.7 3.2e-06 26.5 0.9 2.7 2 1 1 3 3 3 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|307596432|ref|YP_003902749.1| - 4.2e-06 26.9 1.0 6e-06 26.4 0.1 1.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|307596432|ref|YP_003902749.1| - 2.1e-05 23.5 1.1 0.00061 18.6 0.8 2.2 1 1 1 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|307596432|ref|YP_003902749.1| - 2.1e-05 23.9 0.6 5.6e-05 22.5 0.6 1.6 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|307596432|ref|YP_003902749.1| - 0.00042 19.7 1.0 0.00062 19.1 1.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|307596432|ref|YP_003902749.1| - 0.0033 17.4 0.6 0.78 9.7 0.0 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|307596432|ref|YP_003902749.1| - 0.0052 17.3 0.3 2.9 8.5 0.5 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|307596432|ref|YP_003902749.1| - 0.0064 15.8 0.1 0.011 15.1 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|307596432|ref|YP_003902749.1| - 0.012 14.7 0.2 0.019 14.0 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein MCRA PF06100.11 gi|307596432|ref|YP_003902749.1| - 0.24 10.2 0.1 0.31 9.8 0.1 1.1 1 0 0 1 1 1 0 MCRA family Fumerase PF05681.14 gi|307596433|ref|YP_003902750.1| - 4.6e-80 268.9 0.0 5.4e-80 268.7 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) ATPgrasp_N PF18130.1 gi|307596433|ref|YP_003902750.1| - 0.1 13.1 0.1 0.42 11.2 0.1 1.9 2 0 0 2 2 2 0 ATP-grasp N-terminal domain Fumerase_C PF05683.12 gi|307596434|ref|YP_003902751.1| - 2.6e-51 173.9 0.1 3.2e-51 173.6 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus E1-E2_ATPase PF00122.20 gi|307596434|ref|YP_003902751.1| - 0.07 12.7 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 E1-E2 ATPase CBS PF00571.28 gi|307596435|ref|YP_003902752.1| - 1.8e-41 140.4 13.1 4.7e-14 52.6 0.5 4.1 4 0 0 4 4 4 4 CBS domain Aldedh PF00171.22 gi|307596436|ref|YP_003902753.1| - 8.6e-136 453.1 0.0 1e-135 452.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Ribosomal_L24e PF01246.20 gi|307596437|ref|YP_003902754.1| - 6.3e-22 77.6 1.3 6.9e-22 77.4 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|307596437|ref|YP_003902754.1| - 0.0001 22.2 0.2 0.00014 21.8 0.2 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|307596437|ref|YP_003902754.1| - 0.023 14.8 0.0 0.036 14.2 0.0 1.4 1 0 0 1 1 1 0 YHS domain zf-FLZ PF04570.14 gi|307596437|ref|YP_003902754.1| - 0.043 13.3 0.3 0.066 12.7 0.3 1.3 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 DUF2116 PF09889.9 gi|307596437|ref|YP_003902754.1| - 1 9.4 6.9 0.88 9.6 0.2 2.4 2 1 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NUDIX PF00293.28 gi|307596438|ref|YP_003902755.1| - 7.2e-16 58.4 0.0 8.6e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain HhH-GPD PF00730.25 gi|307596439|ref|YP_003902756.1| - 4.7e-19 68.8 0.0 6.5e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|307596439|ref|YP_003902756.1| - 3.5e-05 23.4 0.1 0.00012 21.8 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|307596439|ref|YP_003902756.1| - 0.0029 17.9 3.6 0.0053 17.1 3.6 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|307596439|ref|YP_003902756.1| - 0.0035 17.9 1.0 0.0091 16.6 0.0 2.1 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|307596439|ref|YP_003902756.1| - 0.0079 16.5 0.0 0.14 12.5 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain Proteasome PF00227.26 gi|307596440|ref|YP_003902757.1| - 1.3e-48 165.0 0.1 1.5e-48 164.8 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit FKBP26_C PF18046.1 gi|307596441|ref|YP_003902758.1| - 8.2e-26 89.9 3.1 1.4e-25 89.1 2.5 1.8 2 0 0 2 2 2 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|307596441|ref|YP_003902758.1| - 4.9e-06 26.8 0.0 1.6e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF3553 PF12073.8 gi|307596441|ref|YP_003902758.1| - 0.036 13.8 0.3 0.036 13.8 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3553) MS_channel PF00924.18 gi|307596441|ref|YP_003902758.1| - 0.074 12.6 1.4 1.1 8.8 0.4 2.4 1 1 1 2 2 2 0 Mechanosensitive ion channel TOBE_3 PF12857.7 gi|307596441|ref|YP_003902758.1| - 0.092 12.7 1.1 7.5 6.5 0.0 3.1 3 0 0 3 3 3 0 TOBE-like domain DUF131 PF01998.17 gi|307596442|ref|YP_003902759.1| - 2.2e-20 72.1 2.8 2.2e-20 72.1 2.8 2.2 1 1 1 2 2 2 1 Protein of unknown function DUF131 KASH PF10541.9 gi|307596442|ref|YP_003902759.1| - 0.016 15.4 5.2 1.1 9.5 3.0 2.1 2 0 0 2 2 2 0 Nuclear envelope localisation domain HemY_N PF07219.13 gi|307596442|ref|YP_003902759.1| - 0.12 12.6 1.6 5.9 7.1 0.0 2.1 2 0 0 2 2 2 0 HemY protein N-terminus Saf_2TM PF18303.1 gi|307596442|ref|YP_003902759.1| - 0.22 11.1 0.1 0.22 11.1 0.1 2.0 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain DUF2207 PF09972.9 gi|307596442|ref|YP_003902759.1| - 0.35 9.6 2.9 0.57 8.9 2.9 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF202 PF02656.15 gi|307596442|ref|YP_003902759.1| - 0.52 10.8 3.3 1.5 9.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF202) EphA2_TM PF14575.6 gi|307596442|ref|YP_003902759.1| - 0.53 11.2 5.5 1.2 10.1 0.0 2.2 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain Sigma_reg_N PF13800.6 gi|307596442|ref|YP_003902759.1| - 1 9.7 9.5 5 7.5 0.1 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF5305 PF17231.2 gi|307596442|ref|YP_003902759.1| - 1.9 7.8 3.9 0.91 8.9 0.1 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5305) Rax2 PF12768.7 gi|307596442|ref|YP_003902759.1| - 6.9 6.1 7.6 0.52 9.7 0.3 2.2 2 1 0 2 2 2 0 Cortical protein marker for cell polarity CcmD PF04995.14 gi|307596443|ref|YP_003902760.1| - 0.0052 16.8 0.7 0.0052 16.8 0.7 2.1 2 0 0 2 2 2 1 Heme exporter protein D (CcmD) Pox_P21 PF05313.12 gi|307596443|ref|YP_003902760.1| - 0.0093 15.6 5.6 0.011 15.3 5.6 1.0 1 0 0 1 1 1 1 Poxvirus P21 membrane protein DUF898 PF05987.13 gi|307596443|ref|YP_003902760.1| - 0.018 14.1 3.0 0.019 14.0 3.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF4231 PF14015.6 gi|307596443|ref|YP_003902760.1| - 0.02 15.3 5.4 0.14 12.7 5.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Photo_RC PF00124.19 gi|307596443|ref|YP_003902760.1| - 0.02 14.1 4.8 0.025 13.8 4.8 1.0 1 0 0 1 1 1 0 Photosynthetic reaction centre protein DUF2370 PF10176.9 gi|307596443|ref|YP_003902760.1| - 0.037 13.7 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) YtpI PF14007.6 gi|307596443|ref|YP_003902760.1| - 0.052 13.7 0.2 0.052 13.7 0.2 2.3 2 1 0 2 2 2 0 YtpI-like protein DUF4282 PF14110.6 gi|307596443|ref|YP_003902760.1| - 0.22 12.3 13.1 2.4 9.0 4.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) ABC2_membrane_5 PF13346.6 gi|307596443|ref|YP_003902760.1| - 0.22 11.1 13.1 0.28 10.7 13.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3290 PF11694.8 gi|307596443|ref|YP_003902760.1| - 0.92 9.5 6.4 0.14 12.1 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) DUF4083 PF13314.6 gi|307596443|ref|YP_003902760.1| - 1.4 8.9 8.0 2.5 8.1 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) HemY_N PF07219.13 gi|307596443|ref|YP_003902760.1| - 2.4 8.4 5.4 1.7 8.9 0.4 2.1 2 0 0 2 2 2 0 HemY protein N-terminus DUF3043 PF11241.8 gi|307596443|ref|YP_003902760.1| - 3.2 7.8 7.0 0.42 10.6 0.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3043) Tad PF13400.6 gi|307596443|ref|YP_003902760.1| - 3.9 7.8 15.2 2.9 8.3 0.1 2.9 3 0 0 3 3 3 0 Putative Flp pilus-assembly TadE/G-like DUF2207 PF09972.9 gi|307596443|ref|YP_003902760.1| - 7 5.3 11.3 12 4.6 11.3 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) TPPK_C PF12555.8 gi|307596443|ref|YP_003902760.1| - 9.8 6.3 14.4 2.2 8.4 9.8 2.3 2 1 1 3 3 3 0 Thiamine pyrophosphokinase C terminal Aminotran_1_2 PF00155.21 gi|307596444|ref|YP_003902761.1| - 1.4e-24 87.0 0.0 1.8e-24 86.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|307596444|ref|YP_003902761.1| - 4.3e-05 22.5 0.0 5.9e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|307596444|ref|YP_003902761.1| - 0.0016 17.8 0.0 0.0027 17.0 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Pico_P1A PF02226.16 gi|307596445|ref|YP_003902762.1| - 1.2 9.2 5.3 7 6.8 0.1 3.1 2 0 0 2 2 2 0 Picornavirus coat protein (VP4) CTP_synth_N PF06418.14 gi|307596446|ref|YP_003902763.1| - 1.4e-120 401.6 0.1 2.2e-120 401.0 0.1 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|307596446|ref|YP_003902763.1| - 2.2e-54 184.1 0.0 3.3e-54 183.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|307596446|ref|YP_003902763.1| - 7.6e-08 32.4 0.0 2.2e-07 30.8 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|307596446|ref|YP_003902763.1| - 5e-05 23.3 0.0 8.1e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain HGD-D PF06050.13 gi|307596446|ref|YP_003902763.1| - 0.043 13.6 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component MeaB PF03308.16 gi|307596446|ref|YP_003902763.1| - 0.13 11.2 0.2 0.22 10.5 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ODV-E18 PF10717.9 gi|307596448|ref|YP_003902765.1| - 0.11 12.4 1.6 0.12 12.2 1.6 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 BNIP3 PF06553.12 gi|307596448|ref|YP_003902765.1| - 0.25 11.0 0.3 0.31 10.7 0.3 1.1 1 0 0 1 1 1 0 BNIP3 DS PF01916.17 gi|307596449|ref|YP_003902766.1| - 2.6e-98 328.8 0.0 3e-98 328.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Methyltransf_31 PF13847.6 gi|307596450|ref|YP_003902767.1| - 1.3e-07 31.5 0.0 1.8e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|307596450|ref|YP_003902767.1| - 2.9e-07 30.0 0.0 3.9e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.6 gi|307596450|ref|YP_003902767.1| - 7.4e-07 29.8 0.0 1.2e-06 29.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain HTH_47 PF16221.5 gi|307596450|ref|YP_003902767.1| - 1.8e-05 24.2 0.1 4.8e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 winged helix-turn-helix Methyltransf_2 PF00891.18 gi|307596450|ref|YP_003902767.1| - 0.0001 21.7 0.0 0.00015 21.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_18 PF12847.7 gi|307596450|ref|YP_003902767.1| - 0.0001 22.3 0.0 0.00018 21.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|307596450|ref|YP_003902767.1| - 0.00012 21.7 0.0 0.0003 20.4 0.0 1.7 1 1 0 1 1 1 1 Histone methylation protein DOT1 PCMT PF01135.19 gi|307596450|ref|YP_003902767.1| - 0.001 18.8 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|307596450|ref|YP_003902767.1| - 0.0018 18.3 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|307596450|ref|YP_003902767.1| - 0.0025 17.1 0.0 0.0045 16.3 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_4 PF02390.17 gi|307596450|ref|YP_003902767.1| - 0.0043 16.6 0.0 0.008 15.7 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase DUF742 PF05331.11 gi|307596450|ref|YP_003902767.1| - 0.0048 16.7 0.0 0.0093 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF742) Methyltransf_12 PF08242.12 gi|307596450|ref|YP_003902767.1| - 0.0051 17.5 0.0 0.0088 16.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|307596450|ref|YP_003902767.1| - 0.0052 15.9 0.0 0.0083 15.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase HTH_24 PF13412.6 gi|307596450|ref|YP_003902767.1| - 0.018 14.6 1.4 0.029 13.9 0.6 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Methyltransf_11 PF08241.12 gi|307596450|ref|YP_003902767.1| - 0.022 15.4 0.0 0.035 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|307596450|ref|YP_003902767.1| - 0.03 13.9 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain UPF0020 PF01170.18 gi|307596450|ref|YP_003902767.1| - 0.032 13.9 0.0 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_8 PF05148.15 gi|307596450|ref|YP_003902767.1| - 0.04 13.8 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_15 PF09445.10 gi|307596450|ref|YP_003902767.1| - 0.067 12.8 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|307596450|ref|YP_003902767.1| - 0.079 12.8 0.1 0.1 12.4 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase domain Rrf2 PF02082.20 gi|307596450|ref|YP_003902767.1| - 0.1 12.9 0.1 0.37 11.2 0.1 1.9 2 0 0 2 2 1 0 Transcriptional regulator MetW PF07021.12 gi|307596450|ref|YP_003902767.1| - 0.11 12.0 0.1 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW HTH_40 PF14493.6 gi|307596450|ref|YP_003902767.1| - 0.13 12.7 0.4 0.29 11.6 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain Methyltransf_24 PF13578.6 gi|307596450|ref|YP_003902767.1| - 0.17 12.9 0.0 0.35 11.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain BLOC1_2 PF10046.9 gi|307596451|ref|YP_003902768.1| - 0.12 12.6 0.2 15 6.0 0.0 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Peptidase_M48 PF01435.18 gi|307596452|ref|YP_003902769.1| - 3.7e-25 88.8 0.1 8.6e-25 87.7 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M48 Reprolysin_3 PF13582.6 gi|307596452|ref|YP_003902769.1| - 0.13 12.8 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like PrgI PF12666.7 gi|307596452|ref|YP_003902769.1| - 6 7.7 7.1 1.8 9.3 1.2 2.3 2 0 0 2 2 2 0 PrgI family protein DUF87 PF01935.17 gi|307596454|ref|YP_003902771.1| - 2.8e-10 40.7 0.8 7.9e-10 39.2 0.0 2.1 2 1 0 2 2 2 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|307596454|ref|YP_003902771.1| - 0.0002 21.6 0.2 0.075 13.3 0.2 2.7 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|307596454|ref|YP_003902771.1| - 0.0018 18.2 0.6 0.74 9.7 0.0 2.8 3 0 0 3 3 3 2 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|307596454|ref|YP_003902771.1| - 0.0095 16.5 0.7 2.1 8.8 0.8 2.2 2 0 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|307596454|ref|YP_003902771.1| - 0.012 15.3 0.0 4.3 7.0 0.0 2.6 2 1 0 2 2 2 0 Cytidylate kinase ABC_tran PF00005.27 gi|307596454|ref|YP_003902771.1| - 0.11 13.0 0.0 0.54 10.8 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.6 gi|307596454|ref|YP_003902771.1| - 0.16 12.4 0.0 0.4 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain SapB_1 PF05184.15 gi|307596454|ref|YP_003902771.1| - 0.16 12.0 0.1 0.96 9.5 0.0 2.4 2 0 0 2 2 2 0 Saposin-like type B, region 1 SKA1 PF07160.12 gi|307596454|ref|YP_003902771.1| - 0.19 11.6 2.1 0.23 11.3 0.4 1.9 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 PspB PF06667.12 gi|307596454|ref|YP_003902771.1| - 0.44 10.6 4.6 0.22 11.6 0.5 2.5 3 0 0 3 3 3 0 Phage shock protein B Helicase_C_2 PF13307.6 gi|307596455|ref|YP_003902772.1| - 8.5e-19 68.4 0.0 1.4e-18 67.6 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|307596455|ref|YP_003902772.1| - 1e-07 31.8 0.1 1.7e-07 31.0 0.1 1.3 1 0 0 1 1 1 1 DEAD_2 AAA_25 PF13481.6 gi|307596455|ref|YP_003902772.1| - 0.0073 15.9 0.0 0.19 11.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|307596455|ref|YP_003902772.1| - 0.017 15.5 0.0 0.048 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|307596455|ref|YP_003902772.1| - 0.054 12.8 0.0 0.26 10.6 0.0 1.8 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain TniB PF05621.11 gi|307596455|ref|YP_003902772.1| - 0.11 11.9 0.0 0.28 10.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial TniB protein AAA_22 PF13401.6 gi|307596455|ref|YP_003902772.1| - 0.13 12.5 0.0 1.2 9.4 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|307596455|ref|YP_003902772.1| - 0.25 11.0 0.0 0.75 9.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain AbiJ_NTD4 PF18863.1 gi|307596456|ref|YP_003902773.1| - 0.0023 18.4 0.5 0.0034 17.9 0.5 1.4 1 1 0 1 1 1 1 AbiJ N-terminal domain 4 SesA PF17107.5 gi|307596456|ref|YP_003902773.1| - 0.026 14.7 0.1 0.037 14.2 0.1 1.4 1 0 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases FANCI_S1 PF14675.6 gi|307596456|ref|YP_003902773.1| - 0.04 13.5 0.1 0.051 13.1 0.1 1.1 1 0 0 1 1 1 0 FANCI solenoid 1 RecG_N PF17190.4 gi|307596456|ref|YP_003902773.1| - 0.06 14.1 1.1 0.22 12.3 0.8 2.0 1 1 1 2 2 2 0 RecG N-terminal helical domain AAA_14 PF13173.6 gi|307596456|ref|YP_003902773.1| - 0.15 12.1 0.9 0.59 10.2 0.9 1.9 1 1 0 1 1 1 0 AAA domain TatD_DNase PF01026.21 gi|307596457|ref|YP_003902774.1| - 2.8e-48 164.5 0.0 3.3e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase eIF-1a PF01176.19 gi|307596458|ref|YP_003902775.1| - 0.04 13.7 0.3 0.087 12.6 0.3 1.5 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 zf-C4_Topoisom PF01396.19 gi|307596458|ref|YP_003902775.1| - 0.046 13.5 0.9 0.28 11.0 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger CH PF00307.31 gi|307596458|ref|YP_003902775.1| - 0.081 13.1 0.9 0.18 12.0 0.0 1.9 2 0 0 2 2 2 0 Calponin homology (CH) domain zf-ISL3 PF14690.6 gi|307596458|ref|YP_003902775.1| - 0.23 12.1 0.1 0.23 12.1 0.1 2.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Integrase_H2C2 PF17921.1 gi|307596458|ref|YP_003902775.1| - 0.55 10.4 4.3 0.56 10.4 2.1 2.2 2 0 0 2 2 2 0 Integrase zinc binding domain AAA_assoc_C PF09821.9 gi|307596459|ref|YP_003902776.1| - 7e-29 100.8 0.1 9.5e-29 100.4 0.1 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain E3_UFM1_ligase PF09743.9 gi|307596460|ref|YP_003902777.1| - 0.0022 17.6 0.1 0.0026 17.4 0.1 1.2 1 0 0 1 1 1 1 E3 UFM1-protein ligase 1 EnY2 PF10163.9 gi|307596460|ref|YP_003902777.1| - 0.049 14.0 0.0 0.2 12.1 0.0 2.1 1 1 0 1 1 1 0 Transcription factor e(y)2 Tetrabrachion PF11401.8 gi|307596460|ref|YP_003902777.1| - 0.084 12.9 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Tetrabrachion Peptidase_C74 PF12387.8 gi|307596460|ref|YP_003902777.1| - 0.095 12.2 0.1 4.4 6.7 0.0 2.2 1 1 1 2 2 2 0 Pestivirus NS2 peptidase lci PF12197.8 gi|307596460|ref|YP_003902777.1| - 0.12 12.2 0.1 0.69 9.7 0.0 2.1 2 0 0 2 2 2 0 Bacillus cereus group antimicrobial protein ThiP_synth PF10120.9 gi|307596462|ref|YP_003902779.1| - 1.8e-46 157.8 0.2 2.8e-46 157.1 0.2 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|307596462|ref|YP_003902779.1| - 0.00012 22.1 0.5 0.0014 18.6 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix HTH_23 PF13384.6 gi|307596462|ref|YP_003902779.1| - 0.00012 21.8 0.1 0.00057 19.6 0.1 2.0 2 0 0 2 2 2 1 Homeodomain-like domain KORA PF16509.5 gi|307596462|ref|YP_003902779.1| - 0.014 15.6 0.1 0.22 11.8 0.0 2.4 1 1 1 2 2 2 0 TrfB plasmid transcriptional repressor HTH_24 PF13412.6 gi|307596462|ref|YP_003902779.1| - 0.017 14.7 0.4 0.054 13.1 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding RepB PF07506.11 gi|307596462|ref|YP_003902779.1| - 0.039 14.0 0.0 0.06 13.4 0.0 1.4 1 0 0 1 1 1 0 RepB plasmid partitioning protein YdaS_antitoxin PF15943.5 gi|307596462|ref|YP_003902779.1| - 0.053 13.4 0.0 0.71 9.8 0.0 2.6 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 gi|307596462|ref|YP_003902779.1| - 0.17 11.9 0.0 0.51 10.4 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain RimK PF08443.11 gi|307596463|ref|YP_003902780.1| - 6e-34 117.3 0.0 7.6e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|307596463|ref|YP_003902780.1| - 1.4e-14 53.8 0.0 2.1e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|307596463|ref|YP_003902780.1| - 2e-07 31.2 0.0 5.5e-07 29.8 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|307596463|ref|YP_003902780.1| - 3e-05 23.4 0.0 0.079 12.2 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|307596463|ref|YP_003902780.1| - 0.0036 16.6 0.0 1.5 8.0 0.0 2.1 2 0 0 2 2 2 2 YheC/D like ATP-grasp ATPgrasp_Ter PF15632.6 gi|307596463|ref|YP_003902780.1| - 0.098 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon UbiD PF01977.16 gi|307596464|ref|YP_003902781.1| - 1.9e-94 316.8 0.1 2.1e-94 316.7 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MR_MLE_C PF13378.6 gi|307596465|ref|YP_003902782.1| - 5e-65 219.2 0.0 6.4e-65 218.8 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|307596465|ref|YP_003902782.1| - 4e-09 36.7 0.0 7.3e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF92 PF01940.16 gi|307596466|ref|YP_003902783.1| - 0.041 13.3 0.0 0.041 13.3 0.0 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF92 HK_sensor PF16750.5 gi|307596467|ref|YP_003902784.1| - 0.04 14.2 0.0 1.3 9.4 0.0 3.0 3 0 0 3 3 3 0 Sensor domain of 2-component histidine kinase TetR_C_7 PF14246.6 gi|307596467|ref|YP_003902784.1| - 0.098 12.7 0.1 0.36 10.9 0.1 1.9 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain Phage_ABA_S PF18066.1 gi|307596467|ref|YP_003902784.1| - 0.13 12.9 0.1 1.1 10.0 0.0 2.5 3 0 0 3 3 3 0 Phage ABA sandwich domain ZapA PF05164.13 gi|307596467|ref|YP_003902784.1| - 2.4 8.6 4.9 5.3 7.5 1.6 3.0 2 1 1 3 3 3 0 Cell division protein ZapA Ribosomal_S27 PF01599.19 gi|307596468|ref|YP_003902785.1| - 7e-14 51.7 0.7 8.3e-14 51.5 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a OrfB_Zn_ribbon PF07282.11 gi|307596468|ref|YP_003902785.1| - 0.00049 20.0 0.2 0.00051 19.9 0.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|307596468|ref|YP_003902785.1| - 0.00065 19.6 2.1 0.00098 19.1 2.1 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain ADK_lid PF05191.14 gi|307596468|ref|YP_003902785.1| - 0.0034 17.3 4.1 0.15 12.0 0.7 2.2 2 0 0 2 2 2 2 Adenylate kinase, active site lid GFA PF04828.14 gi|307596468|ref|YP_003902785.1| - 0.0075 16.6 0.9 1.5 9.2 0.1 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme YhfH PF14149.6 gi|307596468|ref|YP_003902785.1| - 0.01 15.8 0.0 3.3 7.8 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein Ribosomal_L37e PF01907.19 gi|307596468|ref|YP_003902785.1| - 0.01 16.0 0.7 0.01 16.0 0.7 1.7 2 0 0 2 2 2 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.12 gi|307596468|ref|YP_003902785.1| - 0.01 15.3 1.9 0.18 11.4 0.1 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding zf_C2H2_10 PF18414.1 gi|307596468|ref|YP_003902785.1| - 0.012 15.1 0.4 0.73 9.4 0.0 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger PriA_CRR PF18319.1 gi|307596468|ref|YP_003902785.1| - 0.013 15.5 1.2 0.049 13.6 1.2 1.9 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain RNA_POL_M_15KD PF02150.16 gi|307596468|ref|YP_003902785.1| - 0.015 15.2 0.3 0.035 14.0 0.3 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|307596468|ref|YP_003902785.1| - 0.03 13.7 2.8 0.53 9.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|307596468|ref|YP_003902785.1| - 0.041 13.8 5.6 0.38 10.7 5.2 2.2 1 1 1 2 2 2 0 Nudix N-terminal zf_UBZ PF18439.1 gi|307596468|ref|YP_003902785.1| - 0.042 13.4 0.8 0.92 9.2 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ISL3 PF14690.6 gi|307596468|ref|YP_003902785.1| - 0.047 14.4 5.4 0.22 12.2 0.6 2.4 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L32p PF01783.23 gi|307596468|ref|YP_003902785.1| - 0.049 13.9 1.7 1.5 9.2 0.1 2.1 1 1 1 2 2 2 0 Ribosomal L32p protein family DUF2387 PF09526.10 gi|307596468|ref|YP_003902785.1| - 0.068 13.3 0.6 0.1 12.8 0.6 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF1936 PF09151.10 gi|307596468|ref|YP_003902785.1| - 0.077 12.9 4.6 8.7 6.4 0.4 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) zf-NADH-PPase PF09297.11 gi|307596468|ref|YP_003902785.1| - 0.08 12.6 4.4 0.31 10.7 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|307596468|ref|YP_003902785.1| - 0.1 12.4 3.3 2.9 7.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|307596468|ref|YP_003902785.1| - 0.16 11.7 3.2 4.1 7.2 0.1 2.5 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_ribbon_recom PF13408.6 gi|307596468|ref|YP_003902785.1| - 1.3 9.6 5.6 20 5.8 6.3 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Glycos_transf_1 PF00534.20 gi|307596469|ref|YP_003902786.1| - 2.8e-44 150.7 0.0 4.1e-44 150.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|307596469|ref|YP_003902786.1| - 8.9e-33 113.7 1.3 2.2e-32 112.4 1.3 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|307596469|ref|YP_003902786.1| - 3.4e-29 102.0 0.0 6.6e-29 101.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|307596469|ref|YP_003902786.1| - 1.1e-21 77.9 0.1 2.1e-21 77.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|307596469|ref|YP_003902786.1| - 2.6e-19 69.9 2.3 2.8e-10 40.3 0.8 2.4 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|307596469|ref|YP_003902786.1| - 3.9e-12 46.4 0.0 7.6e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|307596469|ref|YP_003902786.1| - 1.8e-05 24.8 0.0 4e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycogen_syn PF05693.13 gi|307596469|ref|YP_003902786.1| - 0.0085 14.7 0.1 0.47 9.0 0.0 2.7 3 0 0 3 3 3 1 Glycogen synthase AAA_17 PF13207.6 gi|307596470|ref|YP_003902787.1| - 8.7e-32 110.4 0.1 1.1e-31 110.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|307596470|ref|YP_003902787.1| - 3.4e-05 24.4 0.0 7.7e-05 23.2 0.0 1.6 1 1 1 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|307596470|ref|YP_003902787.1| - 0.0028 17.3 0.6 0.53 9.9 0.6 2.5 1 1 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.6 gi|307596470|ref|YP_003902787.1| - 0.011 15.9 0.0 0.022 14.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|307596470|ref|YP_003902787.1| - 0.029 14.6 0.0 0.051 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|307596470|ref|YP_003902787.1| - 0.037 14.3 0.0 0.1 12.9 0.0 1.7 1 1 1 2 2 2 0 AAA domain Glyco_trans_4_3 PF12000.8 gi|307596470|ref|YP_003902787.1| - 0.16 11.7 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 4 group AAA_30 PF13604.6 gi|307596470|ref|YP_003902787.1| - 0.16 11.6 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DJ-1_PfpI PF01965.24 gi|307596471|ref|YP_003902788.1| - 2.8e-09 37.0 0.1 1.3e-08 34.9 0.1 1.9 1 1 0 1 1 1 1 DJ-1/PfpI family ThuA PF06283.11 gi|307596471|ref|YP_003902788.1| - 0.11 12.7 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Trehalose utilisation Fe-ADH_2 PF13685.6 gi|307596472|ref|YP_003902789.1| - 2.1e-56 191.4 0.0 2.6e-56 191.1 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|307596472|ref|YP_003902789.1| - 5e-22 78.2 0.1 1.4e-21 76.8 0.1 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|307596472|ref|YP_003902789.1| - 8.7e-10 38.2 0.1 3.4e-09 36.3 0.1 1.8 1 1 0 1 1 1 1 3-dehydroquinate synthase PHO4 PF01384.20 gi|307596473|ref|YP_003902790.1| - 8.8e-19 67.7 30.6 1.9e-17 63.4 30.6 2.0 1 1 0 1 1 1 1 Phosphate transporter family Myc_target_1 PF15179.6 gi|307596473|ref|YP_003902790.1| - 0.078 12.9 0.9 0.078 12.9 0.9 2.2 2 0 0 2 2 2 0 Myc target protein 1 Thi4 PF01946.17 gi|307596474|ref|YP_003902791.1| - 5.9e-72 241.7 1.3 6.9e-72 241.5 1.3 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|307596474|ref|YP_003902791.1| - 5.9e-14 52.4 5.9 1.6e-08 34.5 1.4 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|307596474|ref|YP_003902791.1| - 5.2e-10 39.4 0.2 1.3e-09 38.2 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|307596474|ref|YP_003902791.1| - 7.7e-10 38.4 5.7 2e-07 30.5 1.1 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|307596474|ref|YP_003902791.1| - 1.3e-09 38.0 1.4 1.7e-09 37.5 1.4 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|307596474|ref|YP_003902791.1| - 2.7e-07 30.2 0.0 4.2e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|307596474|ref|YP_003902791.1| - 3.8e-06 26.4 0.2 6.7e-06 25.5 0.2 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|307596474|ref|YP_003902791.1| - 5.7e-05 22.0 1.0 8.7e-05 21.4 1.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|307596474|ref|YP_003902791.1| - 0.0002 20.7 0.7 0.00041 19.7 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|307596474|ref|YP_003902791.1| - 0.00044 20.8 2.4 0.0019 18.7 0.2 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|307596474|ref|YP_003902791.1| - 0.00046 19.4 0.9 0.00046 19.4 0.9 1.4 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|307596474|ref|YP_003902791.1| - 0.0012 18.3 0.2 0.0024 17.2 0.2 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase ThiF PF00899.21 gi|307596474|ref|YP_003902791.1| - 0.02 14.3 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 ThiF family Trp_halogenase PF04820.14 gi|307596474|ref|YP_003902791.1| - 0.025 13.4 0.2 0.042 12.7 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|307596474|ref|YP_003902791.1| - 0.044 12.8 0.1 0.3 10.1 0.0 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Shikimate_DH PF01488.20 gi|307596474|ref|YP_003902791.1| - 0.054 13.6 0.0 0.096 12.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.6 gi|307596474|ref|YP_003902791.1| - 0.14 11.3 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|307596474|ref|YP_003902791.1| - 0.14 12.1 0.9 0.32 11.0 0.1 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding Arc_trans_TRASH PF08394.10 gi|307596475|ref|YP_003902792.1| - 6.2e-05 23.2 3.4 8.9e-05 22.7 3.4 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain YHS PF04945.13 gi|307596475|ref|YP_003902792.1| - 0.0073 16.4 0.2 0.013 15.6 0.2 1.3 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|307596475|ref|YP_003902792.1| - 0.067 13.1 8.5 0.22 11.5 8.5 1.9 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zf-C6H2 PF15801.5 gi|307596475|ref|YP_003902792.1| - 1.4 9.3 8.5 27 5.1 8.5 2.1 1 1 0 1 1 1 0 zf-MYND-like zinc finger, mRNA-binding Nitro_FeMo-Co PF02579.17 gi|307596476|ref|YP_003902793.1| - 2.6e-09 37.3 0.0 1.3e-07 31.8 0.0 2.1 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Thioredoxin PF00085.20 gi|307596477|ref|YP_003902794.1| - 2.1e-23 82.2 0.0 3.1e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|307596477|ref|YP_003902794.1| - 1.7e-06 28.4 0.2 0.00044 20.7 0.2 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|307596477|ref|YP_003902794.1| - 3.1e-05 24.2 0.1 0.016 15.5 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|307596477|ref|YP_003902794.1| - 0.0017 18.4 0.0 0.0058 16.7 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 gi|307596477|ref|YP_003902794.1| - 0.0029 17.4 0.1 0.0033 17.2 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin Phosducin PF02114.16 gi|307596477|ref|YP_003902794.1| - 0.027 13.4 0.0 0.03 13.3 0.0 1.2 1 0 0 1 1 1 0 Phosducin Thioredoxin_5 PF13743.6 gi|307596477|ref|YP_003902794.1| - 0.04 13.6 1.3 1.1 8.9 0.6 2.2 2 0 0 2 2 2 0 Thioredoxin OST3_OST6 PF04756.13 gi|307596477|ref|YP_003902794.1| - 0.088 12.1 0.0 0.15 11.4 0.0 1.4 1 1 0 1 1 1 0 OST3 / OST6 family, transporter family Aminotran_3 PF00202.21 gi|307596478|ref|YP_003902795.1| - 7.3e-95 318.0 0.0 8.7e-95 317.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|307596478|ref|YP_003902795.1| - 0.0015 17.8 0.0 0.0021 17.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DUF5046 PF16465.5 gi|307596478|ref|YP_003902795.1| - 0.12 11.8 0.1 0.23 10.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5046) Succ_CoA_lig PF13607.6 gi|307596479|ref|YP_003902796.1| - 1.1e-47 161.3 0.6 4.3e-46 156.2 0.1 3.2 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|307596479|ref|YP_003902796.1| - 1.5e-22 80.2 1.1 8.3e-22 77.9 0.3 2.6 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|307596479|ref|YP_003902796.1| - 2.2e-15 57.1 0.5 6.1e-15 55.7 0.5 1.8 1 0 0 1 1 1 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|307596479|ref|YP_003902796.1| - 0.16 11.9 0.3 0.88 9.5 0.1 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATP-grasp_5 PF13549.6 gi|307596480|ref|YP_003902797.1| - 3.4e-76 255.6 0.0 3.8e-76 255.4 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|307596480|ref|YP_003902797.1| - 0.00018 21.2 0.0 0.00025 20.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|307596480|ref|YP_003902797.1| - 0.0018 17.9 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.22 gi|307596480|ref|YP_003902797.1| - 0.0023 17.5 0.0 0.0043 16.7 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|307596480|ref|YP_003902797.1| - 0.025 14.1 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Peptidase_M48 PF01435.18 gi|307596481|ref|YP_003902798.1| - 3.9e-33 114.9 0.0 8e-33 113.9 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M48 Amastin PF07344.11 gi|307596481|ref|YP_003902798.1| - 0.011 15.6 0.8 0.011 15.6 0.8 1.6 2 0 0 2 2 2 0 Amastin surface glycoprotein Peptidase_M56 PF05569.11 gi|307596481|ref|YP_003902798.1| - 0.025 13.8 0.1 0.062 12.5 0.0 1.8 2 0 0 2 2 2 0 BlaR1 peptidase M56 Cadherin_C_2 PF16492.5 gi|307596481|ref|YP_003902798.1| - 0.24 12.2 0.1 0.24 12.2 0.1 2.1 3 0 0 3 3 3 0 Cadherin cytoplasmic C-terminal SUR7 PF06687.12 gi|307596481|ref|YP_003902798.1| - 0.45 10.1 4.5 6.9 6.2 2.6 2.1 2 0 0 2 2 2 0 SUR7/PalI family Pam17 PF08566.10 gi|307596481|ref|YP_003902798.1| - 1.1 9.1 2.7 2.8 7.8 2.7 1.6 1 1 0 1 1 1 0 Mitochondrial import protein Pam17 MgtE PF01769.16 gi|307596481|ref|YP_003902798.1| - 5.2 7.5 9.8 29 5.0 0.1 2.2 2 0 0 2 2 2 0 Divalent cation transporter DUF3782 PF12644.7 gi|307596482|ref|YP_003902799.1| - 0.081 13.1 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) DUF1152 PF06626.12 gi|307596484|ref|YP_003902801.1| - 1.6e-104 349.3 1.8 1.8e-104 349.1 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) DIM PF08194.12 gi|307596487|ref|YP_003902804.1| - 0.031 14.5 0.8 0.031 14.5 0.8 1.6 2 0 0 2 2 2 0 DIM protein Baculo_p74 PF04583.12 gi|307596488|ref|YP_003902805.1| - 0.0043 16.6 0.1 0.0043 16.6 0.1 1.0 1 0 0 1 1 1 1 Baculoviridae p74 conserved region Helicase_C PF00271.31 gi|307596489|ref|YP_003902806.1| - 6.8e-19 68.2 0.3 2.4e-18 66.5 0.2 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|307596489|ref|YP_003902806.1| - 7.1e-14 51.6 0.1 1.2e-13 50.9 0.1 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|307596489|ref|YP_003902806.1| - 7.1e-13 48.9 0.0 1.5e-07 31.5 0.0 2.5 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Intein_splicing PF14890.6 gi|307596489|ref|YP_003902806.1| - 3.8e-10 39.8 0.0 5.6e-09 36.1 0.0 2.6 1 1 0 1 1 1 1 Intein splicing domain DEAD PF00270.29 gi|307596489|ref|YP_003902806.1| - 0.00012 22.0 0.0 0.00045 20.0 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|307596489|ref|YP_003902806.1| - 0.0088 16.2 0.6 0.057 13.6 0.0 2.1 1 1 1 2 2 2 1 Helicase C-terminal domain bact-PGI_C PF10432.9 gi|307596490|ref|YP_003902807.1| - 1.5e-32 112.8 0.0 2e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|307596490|ref|YP_003902807.1| - 3.3e-06 27.0 0.0 4.1e-05 23.4 0.0 2.6 3 0 0 3 3 3 1 SIS domain SIS_2 PF13580.6 gi|307596490|ref|YP_003902807.1| - 0.011 15.7 0.0 0.029 14.4 0.0 1.7 1 0 0 1 1 1 0 SIS domain Methyltransf_18 PF12847.7 gi|307596490|ref|YP_003902807.1| - 0.11 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TrmK PF04816.12 gi|307596490|ref|YP_003902807.1| - 0.15 11.6 0.7 0.33 10.5 0.4 1.7 2 0 0 2 2 2 0 tRNA (adenine(22)-N(1))-methyltransferase MFS_1 PF07690.16 gi|307596491|ref|YP_003902808.1| - 4.6e-23 81.7 50.4 2.9e-14 52.8 28.7 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Aminotran_4 PF01063.19 gi|307596492|ref|YP_003902809.1| - 8.8e-48 163.1 0.0 1e-47 162.8 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Fe_dep_repr_C PF02742.15 gi|307596493|ref|YP_003902810.1| - 1.7e-21 76.1 0.0 5.6e-21 74.4 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain TrmB PF01978.19 gi|307596493|ref|YP_003902810.1| - 7.3e-06 25.8 0.0 1.4e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|307596493|ref|YP_003902810.1| - 0.00035 20.4 0.0 0.00056 19.8 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|307596493|ref|YP_003902810.1| - 0.00059 19.6 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_45 PF14947.6 gi|307596493|ref|YP_003902810.1| - 0.0032 17.4 0.0 0.0042 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4423 PF14394.6 gi|307596493|ref|YP_003902810.1| - 0.004 16.9 0.0 0.06 13.0 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) RuvB_C PF05491.13 gi|307596493|ref|YP_003902810.1| - 0.0047 16.8 0.1 0.0086 15.9 0.1 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain Fe_dep_repress PF01325.19 gi|307596493|ref|YP_003902810.1| - 0.0065 16.6 0.0 0.016 15.4 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HemN_C PF06969.16 gi|307596493|ref|YP_003902810.1| - 0.0084 16.1 0.0 0.057 13.5 0.0 2.0 2 0 0 2 2 2 1 HemN C-terminal domain HTH_Crp_2 PF13545.6 gi|307596493|ref|YP_003902810.1| - 0.0097 15.9 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|307596493|ref|YP_003902810.1| - 0.011 15.6 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|307596493|ref|YP_003902810.1| - 0.016 15.0 0.0 0.059 13.2 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|307596493|ref|YP_003902810.1| - 0.024 15.1 0.0 0.06 13.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain IF2_N PF04760.15 gi|307596493|ref|YP_003902810.1| - 0.035 13.9 0.2 7.8 6.4 0.1 3.4 2 1 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_36 PF13730.6 gi|307596493|ref|YP_003902810.1| - 0.045 13.7 0.0 0.066 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MotA_activ PF09114.10 gi|307596493|ref|YP_003902810.1| - 0.047 13.8 0.2 0.13 12.4 0.2 1.7 1 1 0 1 1 1 0 Transcription factor MotA, activation domain HTH_11 PF08279.12 gi|307596493|ref|YP_003902810.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain Nramp PF01566.18 gi|307596494|ref|YP_003902811.1| - 4.2e-39 134.5 31.9 4.2e-39 134.5 31.9 1.4 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein MFS_1 PF07690.16 gi|307596495|ref|YP_003902812.1| - 3.8e-23 82.0 45.6 7.4e-16 58.0 17.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|307596495|ref|YP_003902812.1| - 7.1e-08 31.7 0.0 2.3e-07 30.0 0.0 2.0 1 1 0 1 1 1 1 MFS_1 like family MFS_3 PF05977.13 gi|307596495|ref|YP_003902812.1| - 0.0015 17.0 26.4 0.025 13.0 0.8 2.1 1 1 1 2 2 2 2 Transmembrane secretion effector Pro-kuma_activ PF09286.11 gi|307596496|ref|YP_003902813.1| - 5.9e-06 26.6 0.0 1.2e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|307596496|ref|YP_003902813.1| - 1.3e-05 24.7 0.0 4.3e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 Subtilase family MarC PF01914.17 gi|307596497|ref|YP_003902814.1| - 1.8e-29 102.6 20.6 2.3e-29 102.2 20.6 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein MazE_antitoxin PF04014.18 gi|307596498|ref|YP_003902815.1| - 3.9e-08 33.0 0.0 0.00022 21.1 0.0 2.4 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|307596498|ref|YP_003902815.1| - 0.018 15.5 0.0 7.2 7.1 0.0 2.2 1 1 1 2 2 2 0 prlF antitoxin for toxin YhaV_toxin Ribosomal_L40e PF01020.17 gi|307596501|ref|YP_003902818.1| - 2.2e-07 30.7 1.6 2.8e-07 30.3 1.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-RanBP PF00641.18 gi|307596501|ref|YP_003902818.1| - 3.2e-06 26.3 2.6 3.7e-06 26.1 2.6 1.1 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|307596501|ref|YP_003902818.1| - 0.0048 16.9 3.0 0.0066 16.4 3.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|307596501|ref|YP_003902818.1| - 0.0065 16.2 4.8 0.0091 15.7 4.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|307596501|ref|YP_003902818.1| - 0.0067 16.4 0.3 0.0077 16.2 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|307596501|ref|YP_003902818.1| - 0.0084 16.0 1.1 0.01 15.7 1.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_C2H2_13 PF18508.1 gi|307596501|ref|YP_003902818.1| - 0.04 13.5 0.1 0.074 12.6 0.1 1.4 1 0 0 1 1 1 0 Zinc finger domain zf-ribbon_3 PF13248.6 gi|307596501|ref|YP_003902818.1| - 0.072 12.5 3.7 0.11 12.0 3.7 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|307596501|ref|YP_003902818.1| - 1.6 8.5 7.2 0.54 10.0 0.7 1.9 1 1 1 2 2 2 0 Rubredoxin metal binding domain DUF1965 PF09248.10 gi|307596502|ref|YP_003902819.1| - 0.024 14.4 0.1 0.045 13.5 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1965) Phos_pyr_kin PF08543.12 gi|307596503|ref|YP_003902820.1| - 6.3e-94 313.9 0.0 8.7e-94 313.5 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|307596503|ref|YP_003902820.1| - 1.7e-65 219.7 0.1 3.6e-65 218.6 0.0 1.6 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|307596503|ref|YP_003902820.1| - 1.1e-12 47.9 0.0 1.8e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Tape_meas_lam_C PF09718.10 gi|307596504|ref|YP_003902821.1| - 0.012 15.7 1.7 0.02 15.0 1.7 1.3 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF2207 PF09972.9 gi|307596504|ref|YP_003902821.1| - 0.096 11.4 2.8 0.1 11.3 2.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3852 PF12963.7 gi|307596504|ref|YP_003902821.1| - 1.7 9.0 9.1 0.067 13.5 2.5 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3852) SRP19 PF01922.17 gi|307596506|ref|YP_003902823.1| - 1.5e-21 77.2 0.0 1.7e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.22 gi|307596507|ref|YP_003902824.1| - 1e-29 103.5 0.4 1.2e-29 103.2 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e Fer4_8 PF13183.6 gi|307596508|ref|YP_003902825.1| - 4.2e-12 46.3 2.1 9.6e-12 45.2 2.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|307596508|ref|YP_003902825.1| - 8.8e-10 38.7 0.1 5.1e-09 36.2 0.2 2.1 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_17 PF13534.6 gi|307596508|ref|YP_003902825.1| - 3.2e-09 37.2 3.2 3.2e-09 37.2 3.2 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|307596508|ref|YP_003902825.1| - 6.7e-08 33.0 3.7 6.7e-08 33.0 3.7 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|307596508|ref|YP_003902825.1| - 1.6e-06 27.7 9.7 8.7e-05 22.2 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|307596508|ref|YP_003902825.1| - 1.6e-06 28.9 1.7 1.6e-06 28.9 1.7 2.0 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|307596508|ref|YP_003902825.1| - 3.6e-06 27.0 5.3 3.6e-06 27.0 5.3 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|307596508|ref|YP_003902825.1| - 6.6e-06 26.1 6.9 6.6e-06 26.1 6.9 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|307596508|ref|YP_003902825.1| - 0.00063 19.7 1.3 0.00063 19.7 1.3 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|307596508|ref|YP_003902825.1| - 0.0024 18.0 4.4 0.86 9.8 0.2 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|307596508|ref|YP_003902825.1| - 0.0029 17.6 1.8 0.0029 17.6 1.8 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|307596508|ref|YP_003902825.1| - 0.0085 16.9 4.9 0.35 11.7 0.3 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|307596508|ref|YP_003902825.1| - 0.017 15.2 11.1 0.036 14.2 0.3 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|307596508|ref|YP_003902825.1| - 0.028 15.2 0.3 0.26 12.1 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain HydF_tetramer PF18133.1 gi|307596508|ref|YP_003902825.1| - 0.05 13.4 2.3 4.3 7.1 0.1 3.5 3 1 0 3 3 3 0 Hydrogen maturase F tetramerization domain Fer4_4 PF12800.7 gi|307596508|ref|YP_003902825.1| - 0.057 13.9 0.8 0.057 13.9 0.8 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Mut7-C PF01927.16 gi|307596508|ref|YP_003902825.1| - 0.11 12.5 0.2 0.29 11.2 0.2 1.7 1 0 0 1 1 1 0 Mut7-C RNAse domain Fer4_13 PF13370.6 gi|307596508|ref|YP_003902825.1| - 0.33 11.5 9.1 1.6 9.4 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|307596508|ref|YP_003902825.1| - 0.79 10.8 17.7 2.9 9.0 6.5 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain ABM PF03992.16 gi|307596510|ref|YP_003902827.1| - 7.4e-17 61.2 0.0 8.5e-17 61.0 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase SOR PF07682.11 gi|307596510|ref|YP_003902827.1| - 0.00017 20.6 0.1 0.056 12.3 0.0 2.1 1 1 1 2 2 2 2 Sulphur oxygenase reductase DUF4188 PF13826.6 gi|307596510|ref|YP_003902827.1| - 0.0087 16.4 0.0 0.01 16.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4188) DUF4936 PF16290.5 gi|307596510|ref|YP_003902827.1| - 0.041 14.6 0.0 0.053 14.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4936) Ta0938 PF11494.8 gi|307596511|ref|YP_003902828.1| - 4.1e-15 55.9 2.5 4.9e-08 33.2 0.2 2.1 1 1 1 2 2 2 2 Ta0938 Zn_ribbon_recom PF13408.6 gi|307596511|ref|YP_003902828.1| - 0.0069 16.9 1.0 0.0069 16.9 1.0 1.8 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain Ribosomal_S8 PF00410.19 gi|307596512|ref|YP_003902829.1| - 9.1e-28 96.8 0.1 1.2e-27 96.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L32e PF01655.18 gi|307596513|ref|YP_003902830.1| - 8e-33 113.1 0.3 1.4e-32 112.3 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L32 EPL1 PF10513.9 gi|307596513|ref|YP_003902830.1| - 0.041 14.3 0.3 0.042 14.2 0.3 1.2 1 0 0 1 1 1 0 Enhancer of polycomb-like Spt20 PF12090.8 gi|307596513|ref|YP_003902830.1| - 3.1 7.3 9.7 4.4 6.8 9.7 1.2 1 0 0 1 1 1 0 Spt20 family Peptidase_S9 PF00326.21 gi|307596514|ref|YP_003902831.1| - 1.6e-56 191.2 0.1 2.4e-56 190.6 0.1 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|307596514|ref|YP_003902831.1| - 2e-08 34.2 0.0 0.0014 18.3 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|307596514|ref|YP_003902831.1| - 3.6e-08 33.4 0.2 9.6e-07 28.7 0.1 2.5 2 1 1 3 3 3 1 alpha/beta hydrolase fold AXE1 PF05448.12 gi|307596514|ref|YP_003902831.1| - 1.5e-07 30.5 0.0 1.2e-05 24.2 0.0 2.4 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|307596514|ref|YP_003902831.1| - 2.8e-05 23.5 0.1 0.081 12.2 0.1 2.5 3 0 0 3 3 3 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|307596514|ref|YP_003902831.1| - 4.8e-05 23.0 0.0 0.00013 21.6 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family DPPIV_N PF00930.21 gi|307596514|ref|YP_003902831.1| - 0.00029 19.7 0.0 0.0014 17.5 0.0 2.1 1 1 0 1 1 1 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF2920 PF11144.8 gi|307596514|ref|YP_003902831.1| - 0.00056 19.2 0.0 0.54 9.4 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2920) PD40 PF07676.12 gi|307596514|ref|YP_003902831.1| - 0.00069 19.5 0.5 1.1 9.3 0.0 3.5 3 0 0 3 3 2 2 WD40-like Beta Propeller Repeat Abhydrolase_6 PF12697.7 gi|307596514|ref|YP_003902831.1| - 0.011 16.4 0.0 0.022 15.4 0.0 1.6 1 0 0 1 1 1 0 Alpha/beta hydrolase family DUF5050 PF16472.5 gi|307596514|ref|YP_003902831.1| - 0.039 13.2 0.0 0.076 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5050) Abhydrolase_3 PF07859.13 gi|307596514|ref|YP_003902831.1| - 0.096 12.5 0.0 3.4 7.5 0.0 2.1 2 0 0 2 2 2 0 alpha/beta hydrolase fold FSH1 PF03959.13 gi|307596514|ref|YP_003902831.1| - 0.15 11.7 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Phlebovirus_G1 PF07243.11 gi|307596515|ref|YP_003902832.1| - 0.29 9.5 2.8 0.36 9.2 2.8 1.2 1 0 0 1 1 1 0 Phlebovirus glycoprotein G1 Ribosomal_S28e PF01200.18 gi|307596516|ref|YP_003902833.1| - 4.3e-29 100.3 5.1 5.1e-29 100.1 5.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|307596517|ref|YP_003902834.1| - 4.9e-31 106.3 0.2 6.6e-31 105.9 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|307596517|ref|YP_003902834.1| - 6.3e-05 22.8 0.1 0.00011 22.1 0.1 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|307596517|ref|YP_003902834.1| - 0.0025 17.9 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit Pop3 Ribosomal_S19 PF00203.21 gi|307596518|ref|YP_003902835.1| - 1.3e-29 101.9 0.2 2.5e-29 101.0 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S19 EutB PF06751.11 gi|307596518|ref|YP_003902835.1| - 0.023 13.5 3.3 0.063 12.1 3.3 1.6 1 1 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) IHABP4_N PF16174.5 gi|307596518|ref|YP_003902835.1| - 4.1 8.0 8.5 5.4 7.6 8.5 1.3 1 0 0 1 1 1 0 Intracellular hyaluronan-binding protein 4 N-terminal AMP-binding PF00501.28 gi|307596519|ref|YP_003902836.1| - 4.9e-48 163.8 0.0 6.4e-48 163.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 gi|307596519|ref|YP_003902836.1| - 2.5e-13 49.7 0.1 1.3e-12 47.4 0.2 2.3 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 gi|307596519|ref|YP_003902836.1| - 2.4e-06 28.4 0.3 2.1e-05 25.4 0.0 2.5 2 1 0 2 2 2 1 AMP-binding enzyme C-terminal domain AAA_14 PF13173.6 gi|307596521|ref|YP_003902838.1| - 5.8e-32 110.5 0.0 1.8e-31 108.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|307596521|ref|YP_003902838.1| - 0.0017 18.6 0.0 0.31 11.3 0.0 2.5 1 1 1 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|307596521|ref|YP_003902838.1| - 0.0023 18.1 0.3 0.0049 17.0 0.3 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_25 PF13481.6 gi|307596521|ref|YP_003902838.1| - 0.0036 16.9 0.0 0.0068 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|307596521|ref|YP_003902838.1| - 0.0073 16.1 0.0 0.018 14.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|307596521|ref|YP_003902838.1| - 0.016 15.7 0.0 0.036 14.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|307596521|ref|YP_003902838.1| - 0.22 12.0 0.0 4.3 7.9 0.0 2.3 2 0 0 2 2 2 0 ABC transporter 4HBT PF03061.22 gi|307596522|ref|YP_003902839.1| - 9.7e-12 45.1 0.2 1.7e-11 44.3 0.2 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|307596522|ref|YP_003902839.1| - 1.1e-06 28.8 0.3 1.4e-06 28.5 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) DUF3806 PF12713.7 gi|307596522|ref|YP_003902839.1| - 0.0078 16.0 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3806) 4HBT_3 PF13622.6 gi|307596522|ref|YP_003902839.1| - 0.012 15.9 0.1 0.017 15.4 0.1 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily ATPase_2 PF01637.18 gi|307596523|ref|YP_003902840.1| - 2.8e-10 40.5 0.0 1.1e-09 38.6 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|307596523|ref|YP_003902840.1| - 0.1 12.6 0.1 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|307596523|ref|YP_003902840.1| - 0.14 12.7 0.1 0.24 11.9 0.1 1.3 1 0 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 gi|307596523|ref|YP_003902840.1| - 0.15 12.3 0.0 0.33 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|307596523|ref|YP_003902840.1| - 0.25 10.1 0.0 0.4 9.4 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF2204 PF09970.9 gi|307596524|ref|YP_003902841.1| - 0.0012 18.5 0.1 0.048 13.3 0.0 2.1 2 0 0 2 2 2 2 Nucleotidyl transferase of unknown function (DUF2204) PhnA_Zn_Ribbon PF08274.12 gi|307596526|ref|YP_003902843.1| - 0.11 12.4 0.1 0.67 10.0 0.1 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Glyco_hydro_38N PF01074.22 gi|307596527|ref|YP_003902844.1| - 4.2e-60 203.5 0.0 6.6e-60 202.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|307596527|ref|YP_003902844.1| - 9.7e-42 143.5 0.0 1.4e-41 143.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|307596527|ref|YP_003902844.1| - 1.9e-12 47.2 0.0 3.4e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|307596527|ref|YP_003902844.1| - 0.00086 19.4 0.0 0.0019 18.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain LSM PF01423.22 gi|307596528|ref|YP_003902845.1| - 2.2e-20 72.1 0.6 2.5e-20 71.9 0.6 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|307596528|ref|YP_003902845.1| - 0.014 15.5 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain Hfq PF17209.3 gi|307596528|ref|YP_003902845.1| - 0.015 14.9 0.1 0.02 14.5 0.1 1.2 1 0 0 1 1 1 0 Hfq protein UbiA PF01040.18 gi|307596530|ref|YP_003902847.1| - 1e-32 113.5 21.1 1e-32 113.5 21.1 1.7 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF3099 PF11298.8 gi|307596530|ref|YP_003902847.1| - 0.34 11.1 0.1 0.34 11.1 0.1 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF3099) CPBP PF02517.16 gi|307596531|ref|YP_003902848.1| - 3.1e-10 40.3 2.1 3.1e-10 40.3 2.1 2.3 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease DUF4149 PF13664.6 gi|307596531|ref|YP_003902848.1| - 3.9 7.9 10.0 0.095 13.0 2.1 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) ADH_zinc_N PF00107.26 gi|307596532|ref|YP_003902849.1| - 1.1e-22 80.4 0.1 1.7e-22 79.8 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|307596532|ref|YP_003902849.1| - 1.9e-21 76.0 0.0 3.1e-21 75.3 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|307596532|ref|YP_003902849.1| - 2.1e-14 54.7 0.1 3.6e-14 54.0 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase adh_short PF00106.25 gi|307596532|ref|YP_003902849.1| - 0.0088 15.5 0.1 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase SIS_2 PF13580.6 gi|307596532|ref|YP_003902849.1| - 0.19 11.7 0.1 9 6.3 0.0 2.2 2 0 0 2 2 2 0 SIS domain Eno-Rase_NADH_b PF12242.8 gi|307596532|ref|YP_003902849.1| - 0.21 11.3 0.5 0.44 10.3 0.5 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Pilin_N PF07790.11 gi|307596534|ref|YP_003902851.1| - 0.00044 21.1 10.8 0.00083 20.2 9.2 2.2 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Flp1_like PF16982.5 gi|307596534|ref|YP_003902851.1| - 0.015 14.7 0.4 0.027 13.9 0.4 1.4 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain TPPK_C PF12555.8 gi|307596534|ref|YP_003902851.1| - 0.84 9.7 8.1 2.3 8.3 8.1 1.8 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal Peptidase_M22 PF00814.25 gi|307596535|ref|YP_003902852.1| - 1.9e-73 247.5 0.0 2.3e-73 247.3 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Isochorismatase PF00857.20 gi|307596537|ref|YP_003902854.1| - 1.5e-34 119.7 0.0 1.7e-34 119.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family TPR_2 PF07719.17 gi|307596538|ref|YP_003902855.1| - 2.4e-09 36.6 0.5 9e-08 31.7 0.0 3.0 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|307596538|ref|YP_003902855.1| - 1.6e-07 30.8 0.0 9.5e-07 28.4 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|307596538|ref|YP_003902855.1| - 8.7e-06 25.6 0.0 0.00034 20.6 0.0 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|307596538|ref|YP_003902855.1| - 1.6e-05 25.3 0.7 4.1e-05 24.0 0.2 2.0 2 0 0 2 2 1 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|307596538|ref|YP_003902855.1| - 2.1e-05 24.9 0.2 2.1e-05 24.9 0.2 3.3 3 1 1 4 4 3 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|307596538|ref|YP_003902855.1| - 3.7e-05 23.8 0.8 0.00012 22.1 0.3 2.0 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|307596538|ref|YP_003902855.1| - 8.2e-05 22.8 2.8 0.016 15.5 0.1 2.6 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|307596538|ref|YP_003902855.1| - 0.00027 21.5 4.4 0.00036 21.1 0.4 2.6 2 1 0 2 2 2 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|307596538|ref|YP_003902855.1| - 0.002 18.2 0.0 0.0047 17.0 0.0 1.6 1 0 0 1 1 1 1 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.17 gi|307596538|ref|YP_003902855.1| - 0.0037 17.7 0.4 0.0037 17.7 0.4 1.6 2 0 0 2 2 2 1 Bacterial transcriptional activator domain TPR_11 PF13414.6 gi|307596538|ref|YP_003902855.1| - 0.0093 15.6 0.0 0.11 12.2 0.0 2.5 1 1 1 2 2 2 1 TPR repeat TPR_4 PF07721.14 gi|307596538|ref|YP_003902855.1| - 0.015 15.9 0.1 0.015 15.9 0.1 3.5 4 2 1 5 5 4 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|307596538|ref|YP_003902855.1| - 0.016 15.2 0.2 0.057 13.5 0.0 2.0 2 0 0 2 2 1 0 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|307596538|ref|YP_003902855.1| - 0.026 14.5 0.0 0.21 11.6 0.0 2.0 1 1 0 1 1 1 0 Putative TPR-like repeat ANAPC3 PF12895.7 gi|307596538|ref|YP_003902855.1| - 0.033 14.4 0.0 0.059 13.6 0.0 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.6 gi|307596538|ref|YP_003902855.1| - 0.09 12.7 4.6 0.38 10.7 0.1 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat Aminotran_3 PF00202.21 gi|307596539|ref|YP_003902856.1| - 2.6e-59 200.9 0.0 3.6e-59 200.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|307596539|ref|YP_003902856.1| - 0.0043 16.3 0.0 0.15 11.2 0.0 2.3 2 0 0 2 2 2 2 Aminotransferase class I and II Ribosomal_L37e PF01907.19 gi|307596540|ref|YP_003902857.1| - 0.048 13.8 0.3 0.1 12.8 0.3 1.5 1 0 0 1 1 1 0 Ribosomal protein L37e DUF3253 PF11625.8 gi|307596541|ref|YP_003902858.1| - 0.02 15.1 0.0 0.62 10.3 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3253) DUF3127 PF11325.8 gi|307596541|ref|YP_003902858.1| - 0.036 14.3 0.4 8.3 6.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3127) FLgD_tudor PF13861.6 gi|307596541|ref|YP_003902858.1| - 0.076 13.3 0.5 0.14 12.4 0.5 1.4 1 0 0 1 1 1 0 FlgD Tudor-like domain Prefoldin PF02996.17 gi|307596541|ref|YP_003902858.1| - 0.23 11.4 1.2 6.6 6.7 0.1 2.6 2 1 0 2 2 2 0 Prefoldin subunit adh_short_C2 PF13561.6 gi|307596542|ref|YP_003902859.1| - 2.5e-63 213.8 1.2 3.3e-63 213.4 1.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|307596542|ref|YP_003902859.1| - 6.6e-54 182.3 0.6 8.5e-54 182.0 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|307596542|ref|YP_003902859.1| - 6.4e-12 45.7 0.1 8.5e-12 45.3 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|307596542|ref|YP_003902859.1| - 2.7e-06 27.0 0.1 1.5e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|307596542|ref|YP_003902859.1| - 4e-05 23.6 0.2 0.00013 21.9 0.0 1.8 2 0 0 2 2 2 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|307596542|ref|YP_003902859.1| - 0.0002 21.9 0.8 0.016 15.8 0.2 2.8 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 3Beta_HSD PF01073.19 gi|307596542|ref|YP_003902859.1| - 0.00072 18.7 0.1 0.0011 18.1 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 gi|307596542|ref|YP_003902859.1| - 0.0056 16.3 0.1 0.0094 15.5 0.1 1.6 2 0 0 2 2 2 1 NmrA-like family LDcluster4 PF18306.1 gi|307596542|ref|YP_003902859.1| - 0.015 14.9 0.3 0.4 10.2 0.0 2.3 2 0 0 2 2 2 0 SLOG cluster4 family CitMHS PF03600.16 gi|307596543|ref|YP_003902860.1| - 1.5e-44 152.4 17.2 1.5e-44 152.4 17.2 2.0 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|307596543|ref|YP_003902860.1| - 1.5e-13 50.6 40.6 9.6e-09 34.8 4.4 3.0 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|307596543|ref|YP_003902860.1| - 1.5e-12 47.1 0.9 2.1e-09 37.0 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain DUF1731 PF08338.11 gi|307596543|ref|YP_003902860.1| - 0.018 14.8 0.1 0.051 13.4 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1731) DUF3834 PF12916.7 gi|307596544|ref|YP_003902861.1| - 6.1e-71 237.9 0.0 7e-71 237.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) MFS_1 PF07690.16 gi|307596545|ref|YP_003902862.1| - 1.7e-31 109.5 47.6 2.2e-17 63.0 31.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2530 PF10745.9 gi|307596545|ref|YP_003902862.1| - 0.041 14.1 1.4 0.15 12.4 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) SfsA PF03749.13 gi|307596546|ref|YP_003902863.1| - 8.8e-43 145.5 0.0 1.9e-42 144.5 0.0 1.5 2 0 0 2 2 2 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|307596546|ref|YP_003902863.1| - 3e-11 43.3 0.0 6.1e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 SfsA N-terminal OB domain NucS PF01939.16 gi|307596546|ref|YP_003902863.1| - 0.069 12.5 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Endonuclease NucS Asparaginase PF00710.20 gi|307596547|ref|YP_003902864.1| - 5.4e-55 185.9 0.0 7.6e-55 185.4 0.0 1.2 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|307596547|ref|YP_003902864.1| - 1e-34 119.1 0.0 6.4e-34 116.6 0.0 2.3 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|307596547|ref|YP_003902864.1| - 1.3e-16 59.7 0.1 4.4e-16 57.9 0.1 2.0 1 0 0 1 1 1 1 GatD N-terminal domain DUF4260 PF14079.6 gi|307596548|ref|YP_003902865.1| - 1.2 9.1 10.4 0.097 12.6 4.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4260) DUF3413 PF11893.8 gi|307596548|ref|YP_003902865.1| - 8.5 5.5 14.0 9.1 5.4 12.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF3413) Molybdopterin PF00384.22 gi|307596549|ref|YP_003902866.1| - 1.4e-70 238.5 0.0 1.7e-70 238.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|307596549|ref|YP_003902866.1| - 4.1e-22 78.3 0.0 1e-21 77.0 0.0 1.7 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|307596549|ref|YP_003902866.1| - 1.3e-15 57.1 0.2 2.6e-15 56.1 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TPP_enzyme_M PF00205.22 gi|307596549|ref|YP_003902866.1| - 0.14 11.9 0.0 5.1 6.8 0.0 2.4 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DapB_N PF01113.20 gi|307596552|ref|YP_003902869.1| - 5.7e-07 29.7 0.2 9.2e-07 29.0 0.2 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus CoA_binding PF02629.19 gi|307596552|ref|YP_003902869.1| - 3.9e-05 24.2 0.3 8.6e-05 23.2 0.3 1.6 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|307596552|ref|YP_003902869.1| - 0.00071 20.4 0.0 0.0014 19.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 gi|307596552|ref|YP_003902869.1| - 0.017 15.0 0.1 0.23 11.3 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|307596552|ref|YP_003902869.1| - 0.08 13.3 0.7 1.1 9.7 0.4 2.3 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Cren7 PF11520.8 gi|307596553|ref|YP_003902870.1| - 1.3e-16 60.2 0.9 1.5e-16 60.0 0.9 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 AA_kinase PF00696.28 gi|307596555|ref|YP_003902872.1| - 1.9e-26 93.1 0.0 3.8e-26 92.2 0.0 1.4 1 1 0 1 1 1 1 Amino acid kinase family Hydrolase_6 PF13344.6 gi|307596555|ref|YP_003902872.1| - 0.0078 16.3 0.0 0.016 15.3 0.0 1.6 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HD_2 PF12917.7 gi|307596556|ref|YP_003902873.1| - 6.5e-13 48.8 0.0 8.6e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD_3 PF13023.6 gi|307596556|ref|YP_003902873.1| - 3.2e-12 46.7 0.0 5.7e-12 45.9 0.0 1.4 1 1 0 1 1 1 1 HD domain HD PF01966.22 gi|307596556|ref|YP_003902873.1| - 0.008 16.4 0.1 0.039 14.2 0.1 1.9 1 1 0 1 1 1 1 HD domain SUKH_5 PF14567.6 gi|307596556|ref|YP_003902873.1| - 0.06 13.1 0.0 0.085 12.6 0.0 1.5 1 1 0 1 1 1 0 SMI1-KNR4 cell-wall RrnaAD PF00398.20 gi|307596557|ref|YP_003902874.1| - 3e-43 147.8 0.0 3.7e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|307596557|ref|YP_003902874.1| - 2.7e-07 31.2 0.0 5e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|307596557|ref|YP_003902874.1| - 6.9e-06 26.6 0.0 1.3e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|307596557|ref|YP_003902874.1| - 2e-05 24.5 0.0 2.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|307596557|ref|YP_003902874.1| - 2.9e-05 23.9 0.0 4.1e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|307596557|ref|YP_003902874.1| - 0.00059 19.4 0.0 0.00091 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|307596557|ref|YP_003902874.1| - 0.0015 18.4 0.0 0.0019 18.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|307596557|ref|YP_003902874.1| - 0.0058 15.9 0.1 0.0082 15.4 0.1 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain MetW PF07021.12 gi|307596557|ref|YP_003902874.1| - 0.0078 15.8 0.1 0.015 14.9 0.1 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.7 gi|307596557|ref|YP_003902874.1| - 0.025 14.5 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|307596557|ref|YP_003902874.1| - 0.035 13.5 0.0 0.048 13.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|307596557|ref|YP_003902874.1| - 0.095 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Lactamase_B_2 PF12706.7 gi|307596558|ref|YP_003902875.1| - 2.2e-16 60.0 0.0 1.9e-14 53.7 0.0 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|307596558|ref|YP_003902875.1| - 1.1e-14 54.9 1.2 1.8e-11 44.4 0.3 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|307596558|ref|YP_003902875.1| - 0.00082 19.0 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease NmrA PF05368.13 gi|307596558|ref|YP_003902875.1| - 0.049 13.2 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family HTH_20 PF12840.7 gi|307596560|ref|YP_003902877.1| - 5.4e-09 36.0 0.0 8.4e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|307596560|ref|YP_003902877.1| - 1.1e-08 34.8 0.0 2.3e-08 33.8 0.0 1.6 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|307596560|ref|YP_003902877.1| - 2.3e-06 27.3 0.0 3.8e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|307596560|ref|YP_003902877.1| - 2.6e-05 24.0 0.0 4.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|307596560|ref|YP_003902877.1| - 4e-05 23.5 0.0 7.1e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|307596560|ref|YP_003902877.1| - 0.0002 20.8 0.0 0.00032 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|307596560|ref|YP_003902877.1| - 0.00051 19.9 0.0 0.00096 19.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|307596560|ref|YP_003902877.1| - 0.0074 16.2 0.0 0.016 15.1 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|307596560|ref|YP_003902877.1| - 0.032 14.0 0.0 0.071 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|307596561|ref|YP_003902878.1| - 5.7e-21 75.6 0.0 1.2e-19 71.3 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily adh_short_C2 PF13561.6 gi|307596562|ref|YP_003902879.1| - 1.8e-64 217.5 1.5 2.2e-64 217.2 1.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|307596562|ref|YP_003902879.1| - 2.1e-58 197.0 1.0 2.7e-58 196.7 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|307596562|ref|YP_003902879.1| - 1.6e-13 50.9 0.1 2.2e-13 50.5 0.1 1.1 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|307596562|ref|YP_003902879.1| - 6.8e-05 22.4 0.0 0.0015 18.0 0.0 2.0 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|307596562|ref|YP_003902879.1| - 0.027 13.9 0.2 0.093 12.2 0.2 1.9 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family TENA_THI-4 PF03070.16 gi|307596563|ref|YP_003902880.1| - 1.8e-47 161.9 0.0 2e-47 161.7 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Topoisom_bac PF01131.20 gi|307596564|ref|YP_003902881.1| - 3.3e-107 359.0 0.0 4.1e-107 358.7 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|307596564|ref|YP_003902881.1| - 1.3e-16 60.7 0.0 4.7e-16 58.9 0.0 2.0 2 0 0 2 2 2 1 Toprim domain DUF5392 PF17370.2 gi|307596565|ref|YP_003902882.1| - 0.53 10.4 3.4 0.76 9.9 3.4 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5392) Pox_A14 PF05767.12 gi|307596565|ref|YP_003902882.1| - 0.58 10.3 2.7 0.89 9.8 2.7 1.2 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 VirB3 PF05101.13 gi|307596565|ref|YP_003902882.1| - 0.82 9.9 6.8 1.5 9.1 6.8 1.4 1 1 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Cadherin_C_2 PF16492.5 gi|307596565|ref|YP_003902882.1| - 2.2 9.1 4.5 13 6.6 4.5 2.1 1 1 0 1 1 1 0 Cadherin cytoplasmic C-terminal DUF2207 PF09972.9 gi|307596565|ref|YP_003902882.1| - 2.6 6.7 3.5 3.6 6.2 3.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Helicase_C_2 PF13307.6 gi|307596566|ref|YP_003902883.1| - 2.1e-26 93.1 0.0 4.2e-26 92.1 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|307596566|ref|YP_003902883.1| - 1.4e-23 83.4 0.6 2.2e-23 82.8 0.6 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|307596566|ref|YP_003902883.1| - 2.3e-09 37.5 0.0 3.2e-06 27.3 0.0 2.5 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit HBB PF06777.11 gi|307596566|ref|YP_003902883.1| - 2.4e-09 37.1 0.0 8.2e-09 35.4 0.0 1.9 2 1 0 2 2 2 1 Helical and beta-bridge domain DEAD PF00270.29 gi|307596566|ref|YP_003902883.1| - 6.8e-07 29.2 0.1 8.8e-05 22.3 0.0 3.2 2 1 0 2 2 2 1 DEAD/DEAH box helicase PhoH PF02562.16 gi|307596566|ref|YP_003902883.1| - 0.00059 19.4 0.2 0.0081 15.6 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|307596566|ref|YP_003902883.1| - 0.0013 18.5 0.0 0.0051 16.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|307596566|ref|YP_003902883.1| - 0.0022 17.6 0.1 0.0068 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|307596566|ref|YP_003902883.1| - 0.0029 17.9 0.1 4.6 7.5 0.0 2.8 2 1 0 2 2 2 2 AAA domain Terminase_6 PF03237.15 gi|307596566|ref|YP_003902883.1| - 0.012 15.3 0.0 0.05 13.3 0.0 1.9 2 0 0 2 2 2 0 Terminase-like family PP_kinase_C_1 PF17941.1 gi|307596566|ref|YP_003902883.1| - 0.054 13.1 0.0 0.17 11.4 0.0 1.8 1 1 1 2 2 2 0 Polyphosphate kinase C-terminal domain 1 DUF2972 PF11186.8 gi|307596566|ref|YP_003902883.1| - 0.085 12.8 1.8 0.14 12.0 0.9 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2972) AAA_16 PF13191.6 gi|307596566|ref|YP_003902883.1| - 0.12 12.8 0.1 0.42 11.0 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain T2SSE PF00437.20 gi|307596566|ref|YP_003902883.1| - 0.13 11.3 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Radical_SAM PF04055.21 gi|307596567|ref|YP_003902884.1| - 3.7e-23 82.7 0.0 9.5e-23 81.4 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|307596567|ref|YP_003902884.1| - 3.9e-21 74.9 0.1 1e-20 73.5 0.1 1.8 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|307596567|ref|YP_003902884.1| - 6.3e-06 26.4 0.2 2.2e-05 24.7 0.2 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|307596567|ref|YP_003902884.1| - 9.9e-06 25.5 0.0 2.6e-05 24.2 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|307596567|ref|YP_003902884.1| - 0.021 15.2 0.3 0.047 14.1 0.3 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CN_hydrolase PF00795.22 gi|307596568|ref|YP_003902885.1| - 2.7e-17 63.0 0.0 4.1e-17 62.4 0.0 1.3 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase DUF5122 PF17164.4 gi|307596568|ref|YP_003902885.1| - 0.42 11.0 3.7 3.3 8.1 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF5122) beta-propeller Acyl-CoA_dh_1 PF00441.24 gi|307596569|ref|YP_003902886.1| - 9.4e-42 142.7 5.6 1.4e-41 142.1 5.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|307596569|ref|YP_003902886.1| - 3.5e-35 121.1 0.1 1.5e-34 119.0 0.0 2.1 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|307596569|ref|YP_003902886.1| - 2.9e-24 85.1 0.0 5.3e-24 84.2 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|307596569|ref|YP_003902886.1| - 3.4e-21 75.9 2.1 5.1e-21 75.4 2.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|307596569|ref|YP_003902886.1| - 0.021 14.5 0.0 0.047 13.4 0.0 1.6 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal VIT1 PF01988.19 gi|307596570|ref|YP_003902887.1| - 3.7e-38 131.6 8.5 5.2e-38 131.1 8.5 1.2 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.17 gi|307596570|ref|YP_003902887.1| - 7.2e-05 23.2 0.6 0.00016 22.1 0.6 1.5 1 0 0 1 1 1 1 Rubrerythrin DUF3042 PF11240.8 gi|307596570|ref|YP_003902887.1| - 0.39 10.8 4.1 0.88 9.6 1.0 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) StbA PF06406.11 gi|307596571|ref|YP_003902888.1| - 0.15 11.3 0.0 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 StbA protein ATPase_2 PF01637.18 gi|307596573|ref|YP_003902890.1| - 4.4e-16 59.5 1.0 5.9e-16 59.1 0.1 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|307596573|ref|YP_003902890.1| - 8.5e-10 38.8 0.3 0.00066 19.7 0.0 2.9 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|307596573|ref|YP_003902890.1| - 3.3e-07 30.8 0.0 5.6e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307596573|ref|YP_003902890.1| - 4.4e-06 27.0 0.1 1.6e-05 25.2 0.0 1.9 2 1 0 2 2 2 1 AAA domain DUF4423 PF14394.6 gi|307596573|ref|YP_003902890.1| - 0.0047 16.7 0.0 0.008 15.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) DUF4761 PF15958.5 gi|307596573|ref|YP_003902890.1| - 0.092 12.9 0.0 4.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4761) AAA PF00004.29 gi|307596573|ref|YP_003902890.1| - 0.093 13.2 0.0 0.32 11.4 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) GIIM PF08388.11 gi|307596573|ref|YP_003902890.1| - 0.21 11.7 1.4 29 4.8 0.2 3.1 3 0 0 3 3 3 0 Group II intron, maturase-specific domain Urocanase_C PF17392.2 gi|307596574|ref|YP_003902891.1| - 1.7e-81 272.4 0.0 3.1e-81 271.5 0.0 1.4 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|307596574|ref|YP_003902891.1| - 7.2e-81 270.8 0.1 1e-80 270.4 0.1 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|307596574|ref|YP_003902891.1| - 3.4e-43 146.4 0.0 6.2e-43 145.5 0.0 1.5 1 0 0 1 1 1 1 Urocanase N-terminal domain Cons_hypoth698 PF03601.14 gi|307596576|ref|YP_003902893.1| - 4.3e-19 68.5 26.1 4.3e-19 68.5 26.1 2.2 2 0 0 2 2 2 1 Conserved hypothetical protein 698 MazE_antitoxin PF04014.18 gi|307596577|ref|YP_003902894.1| - 2.1e-14 53.0 1.1 3.2e-14 52.4 1.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|307596577|ref|YP_003902894.1| - 0.00039 20.8 0.1 0.00046 20.6 0.1 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF4954 PF16314.5 gi|307596577|ref|YP_003902894.1| - 0.034 12.3 0.1 0.039 12.1 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) POTRA_2 PF08479.11 gi|307596577|ref|YP_003902894.1| - 0.089 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 POTRA domain, ShlB-type PIN PF01850.21 gi|307596578|ref|YP_003902895.1| - 3.5e-15 56.6 0.1 4e-15 56.4 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|307596578|ref|YP_003902895.1| - 0.00024 21.4 0.0 0.0059 16.9 0.0 2.0 1 1 0 1 1 1 1 PIN like domain Arginase PF00491.21 gi|307596579|ref|YP_003902896.1| - 5.4e-59 200.0 0.0 6.5e-59 199.7 0.0 1.0 1 0 0 1 1 1 1 Arginase family Sod_Fe_N PF00081.22 gi|307596582|ref|YP_003902899.1| - 2.8e-28 98.2 1.4 9.6e-28 96.5 0.2 2.2 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|307596582|ref|YP_003902899.1| - 3e-28 98.0 0.0 4.4e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Na_Ca_ex PF01699.24 gi|307596583|ref|YP_003902900.1| - 5.7e-17 62.1 47.0 2e-11 44.0 21.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Phage_rep_org_N PF09681.10 gi|307596584|ref|YP_003902901.1| - 5.3e-05 23.1 0.1 8.9e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) MarR PF01047.22 gi|307596584|ref|YP_003902901.1| - 0.0018 18.2 0.1 0.004 17.0 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|307596584|ref|YP_003902901.1| - 0.0062 16.4 0.2 0.021 14.7 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|307596584|ref|YP_003902901.1| - 0.017 15.0 0.1 0.028 14.3 0.1 1.3 1 0 0 1 1 1 0 MarR family PARP_reg PF02877.14 gi|307596584|ref|YP_003902901.1| - 0.018 15.1 0.1 0.032 14.3 0.1 1.4 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain HTH_20 PF12840.7 gi|307596584|ref|YP_003902901.1| - 0.025 14.6 0.1 0.041 14.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TTRAP PF14203.6 gi|307596584|ref|YP_003902901.1| - 0.028 14.4 1.1 0.06 13.3 0.3 1.9 2 0 0 2 2 2 0 Putative tranposon-transfer assisting protein HTH_Crp_2 PF13545.6 gi|307596584|ref|YP_003902901.1| - 0.041 13.8 0.1 0.076 13.0 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|307596584|ref|YP_003902901.1| - 0.098 12.6 1.2 0.34 10.9 0.1 2.4 2 1 0 2 2 2 0 HTH domain FumaraseC_C PF10415.9 gi|307596584|ref|YP_003902901.1| - 0.11 12.9 2.5 11 6.6 0.2 2.9 2 1 1 3 3 3 0 Fumarase C C-terminus Nudix_N PF12535.8 gi|307596584|ref|YP_003902901.1| - 0.11 12.1 0.2 0.49 10.0 0.2 2.1 1 1 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal Troponin PF00992.20 gi|307596584|ref|YP_003902901.1| - 0.11 12.7 2.0 0.11 12.8 1.0 1.5 1 1 0 1 1 1 0 Troponin Mrr_N PF14338.6 gi|307596584|ref|YP_003902901.1| - 0.15 12.2 1.0 4.1 7.6 0.2 2.4 1 1 1 2 2 2 0 Mrr N-terminal domain DUF1451 PF07295.11 gi|307596584|ref|YP_003902901.1| - 0.3 11.1 1.7 2.8 7.9 1.7 2.0 1 1 0 1 1 1 0 Zinc-ribbon containing domain Pterin_bind PF00809.22 gi|307596585|ref|YP_003902902.1| - 1.7e-59 201.4 2.2 2.5e-47 161.6 0.3 2.0 2 0 0 2 2 2 2 Pterin binding enzyme ALAD PF00490.21 gi|307596585|ref|YP_003902902.1| - 0.012 14.8 0.1 0.017 14.3 0.1 1.2 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase BtpA PF03437.15 gi|307596585|ref|YP_003902902.1| - 0.019 14.4 1.8 0.019 14.4 0.2 1.8 2 0 0 2 2 2 0 BtpA family LysR_substrate PF03466.20 gi|307596585|ref|YP_003902902.1| - 0.097 12.0 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 LysR substrate binding domain Rib_5-P_isom_A PF06026.14 gi|307596586|ref|YP_003902903.1| - 2.5e-57 193.3 0.0 3e-57 193.0 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|307596586|ref|YP_003902903.1| - 0.0011 18.9 0.3 0.037 14.0 0.1 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|307596586|ref|YP_003902903.1| - 0.021 13.9 0.1 5.3 6.1 0.0 2.2 2 0 0 2 2 2 0 Putative sugar-binding domain Lyase_aromatic PF00221.19 gi|307596587|ref|YP_003902904.1| - 5.9e-144 480.2 3.6 6.7e-144 480.0 3.6 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase AA_permease_2 PF13520.6 gi|307596589|ref|YP_003902906.1| - 2.7e-41 141.8 54.1 2.7e-41 141.8 54.1 2.3 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|307596589|ref|YP_003902906.1| - 2.2e-25 89.2 50.4 2.2e-25 89.2 50.4 2.1 2 0 0 2 2 2 1 Amino acid permease PALP PF00291.25 gi|307596590|ref|YP_003902907.1| - 2.9e-72 243.6 0.0 3.3e-72 243.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Aminotran_1_2 PF00155.21 gi|307596591|ref|YP_003902908.1| - 3.6e-55 187.6 0.0 4.2e-55 187.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II UPF0154 PF03672.13 gi|307596591|ref|YP_003902908.1| - 0.00012 22.0 0.2 0.064 13.3 0.1 2.9 3 0 0 3 3 3 2 Uncharacterised protein family (UPF0154) DegT_DnrJ_EryC1 PF01041.17 gi|307596591|ref|YP_003902908.1| - 0.00018 21.0 0.0 0.00025 20.5 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|307596591|ref|YP_003902908.1| - 0.003 16.2 0.0 0.0041 15.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|307596591|ref|YP_003902908.1| - 0.0041 16.1 0.0 0.0066 15.4 0.0 1.3 1 0 0 1 1 1 1 Allinase DUF4985 PF16373.5 gi|307596591|ref|YP_003902908.1| - 0.096 13.2 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function PALP PF00291.25 gi|307596592|ref|YP_003902909.1| - 1.7e-68 231.2 0.0 2e-68 231.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rubredoxin_2 PF18073.1 gi|307596592|ref|YP_003902909.1| - 0.00011 21.9 7.6 0.00019 21.0 7.6 1.5 1 0 0 1 1 1 1 Rubredoxin metal binding domain HypA PF01155.19 gi|307596592|ref|YP_003902909.1| - 0.016 15.2 0.0 0.036 14.1 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|307596592|ref|YP_003902909.1| - 0.026 14.7 0.1 0.048 13.8 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|307596592|ref|YP_003902909.1| - 0.094 12.6 5.4 0.37 10.7 5.4 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain MIT PF04212.18 gi|307596592|ref|YP_003902909.1| - 0.17 12.0 0.1 0.31 11.1 0.1 1.5 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain tRNA-synt_1c PF00749.21 gi|307596593|ref|YP_003902910.1| - 1.6e-63 214.5 0.0 2.3e-63 214.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|307596593|ref|YP_003902910.1| - 2.7e-30 105.5 0.0 5.9e-30 104.4 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Amidohydro_3 PF07969.11 gi|307596594|ref|YP_003902911.1| - 5.7e-23 82.1 0.0 2.2e-18 67.0 0.0 2.1 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|307596594|ref|YP_003902911.1| - 1.2e-17 64.2 0.0 1.5e-16 60.7 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family DUF4287 PF14117.6 gi|307596595|ref|YP_003902912.1| - 0.021 15.0 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) GrpE PF01025.19 gi|307596595|ref|YP_003902912.1| - 0.087 12.5 0.0 1.8 8.2 0.0 2.0 2 0 0 2 2 2 0 GrpE Glycos_transf_4 PF00953.21 gi|307596596|ref|YP_003902913.1| - 3.8e-25 88.7 22.5 3.8e-25 88.7 22.5 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 4 Epimerase PF01370.21 gi|307596597|ref|YP_003902914.1| - 5.2e-41 140.7 0.0 6.2e-41 140.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|307596597|ref|YP_003902914.1| - 2.6e-38 132.3 0.0 7.6e-37 127.4 0.0 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|307596597|ref|YP_003902914.1| - 1.8e-18 66.7 0.0 2.2e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|307596597|ref|YP_003902914.1| - 1.2e-10 40.9 0.0 2.8e-10 39.7 0.0 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|307596597|ref|YP_003902914.1| - 4.7e-10 39.1 0.0 1.1e-07 31.4 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|307596597|ref|YP_003902914.1| - 1.2e-05 24.6 0.0 0.0007 18.8 0.0 2.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein DUF354 PF04007.12 gi|307596598|ref|YP_003902915.1| - 2.1e-42 145.4 0.0 2.4e-42 145.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Lar_restr_allev PF14354.6 gi|307596599|ref|YP_003902916.1| - 0.027 14.8 0.8 0.21 12.0 0.0 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2HC5 PF06221.13 gi|307596599|ref|YP_003902916.1| - 0.029 14.3 0.3 0.053 13.5 0.3 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type NOB1_Zn_bind PF08772.11 gi|307596599|ref|YP_003902916.1| - 0.043 14.0 0.2 3.9 7.7 0.0 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2 PF00096.26 gi|307596599|ref|YP_003902916.1| - 0.05 14.1 2.7 0.64 10.6 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|307596599|ref|YP_003902916.1| - 0.061 13.4 1.7 0.19 11.9 1.7 1.8 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|307596599|ref|YP_003902916.1| - 0.064 13.3 0.1 0.068 13.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA E6 PF00518.17 gi|307596599|ref|YP_003902916.1| - 0.068 13.6 0.4 0.22 12.0 0.3 1.7 1 1 1 2 2 2 0 Early Protein (E6) UPF0547 PF10571.9 gi|307596599|ref|YP_003902916.1| - 0.33 11.1 0.6 0.33 11.1 0.6 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Lactamase_B PF00753.27 gi|307596601|ref|YP_003902918.1| - 0.0048 16.9 0.0 0.0097 15.9 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|307596601|ref|YP_003902918.1| - 0.013 15.1 0.0 0.059 12.9 0.0 2.0 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|307596601|ref|YP_003902918.1| - 0.031 14.2 0.0 0.052 13.4 0.0 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Ribosomal_L37e PF01907.19 gi|307596602|ref|YP_003902919.1| - 4.8e-22 77.9 9.3 5.4e-22 77.7 9.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|307596602|ref|YP_003902919.1| - 0.011 15.8 0.8 0.014 15.4 0.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF2752 PF10825.8 gi|307596602|ref|YP_003902919.1| - 0.028 14.5 2.5 2.3 8.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-ribbon_3 PF13248.6 gi|307596602|ref|YP_003902919.1| - 0.23 10.9 4.4 0.43 10.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|307596602|ref|YP_003902919.1| - 0.29 10.6 3.3 0.43 10.1 3.3 1.4 1 1 0 1 1 1 0 Mu-like prophage protein Com zinc_ribbon_2 PF13240.6 gi|307596602|ref|YP_003902919.1| - 2.7 7.8 6.6 13 5.6 6.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain CoA_transf_3 PF02515.17 gi|307596603|ref|YP_003902920.1| - 2.4e-114 382.3 0.0 2.9e-114 382.0 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III 4HBT_2 PF13279.6 gi|307596604|ref|YP_003902921.1| - 2.7e-06 27.9 0.0 3.9e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|307596604|ref|YP_003902921.1| - 1.7e-05 25.1 0.0 2.3e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Polbeta PF18765.1 gi|307596605|ref|YP_003902922.1| - 0.00034 20.6 0.9 0.018 15.1 0.1 3.0 1 1 1 2 2 2 1 Polymerase beta, Nucleotidyltransferase RE_AccI PF09545.10 gi|307596605|ref|YP_003902922.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 AccI restriction endonuclease ACT PF01842.25 gi|307596606|ref|YP_003902923.1| - 4.4e-06 26.3 0.8 1.1e-05 25.1 0.2 2.0 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|307596606|ref|YP_003902923.1| - 3.1e-05 24.5 4.0 0.0025 18.4 0.1 2.5 1 1 1 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|307596606|ref|YP_003902923.1| - 0.1 12.6 0.1 0.32 11.0 0.1 1.9 1 1 0 1 1 1 0 ACT domain Vps51 PF08700.11 gi|307596606|ref|YP_003902923.1| - 0.14 12.2 0.1 0.27 11.3 0.1 1.4 1 0 0 1 1 1 0 Vps51/Vps67 Ribosomal_L14e PF01929.17 gi|307596607|ref|YP_003902924.1| - 1.7e-05 25.2 0.0 2.5e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.29 gi|307596607|ref|YP_003902924.1| - 0.00039 20.2 1.0 0.00083 19.2 1.0 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L27e PF01777.18 gi|307596607|ref|YP_003902924.1| - 0.04 14.3 0.0 0.056 13.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal L27e protein family MR_MLE_C PF13378.6 gi|307596608|ref|YP_003902925.1| - 7.6e-62 208.7 0.0 1.1e-61 208.2 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|307596608|ref|YP_003902925.1| - 2.1e-12 47.3 0.0 4.1e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF4015 PF13200.6 gi|307596608|ref|YP_003902925.1| - 0.0014 17.8 0.2 0.002 17.2 0.2 1.2 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain DeoC PF01791.9 gi|307596609|ref|YP_003902926.1| - 1.7e-08 34.4 0.0 2.4e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Ribosomal_S11 PF00411.19 gi|307596610|ref|YP_003902927.1| - 4.5e-44 149.4 2.3 6.4e-44 148.8 2.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Acetyltransf_1 PF00583.25 gi|307596611|ref|YP_003902928.1| - 5.9e-08 32.9 0.1 1.1e-07 32.1 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|307596611|ref|YP_003902928.1| - 8.4e-08 32.5 0.2 1.4e-07 31.8 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|307596611|ref|YP_003902928.1| - 1.6e-05 24.9 0.0 2.3e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|307596611|ref|YP_003902928.1| - 5.8e-05 23.0 0.0 0.0001 22.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Rad51 PF08423.11 gi|307596612|ref|YP_003902929.1| - 9e-97 323.3 0.0 1.1e-96 323.0 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|307596612|ref|YP_003902929.1| - 3.5e-12 46.3 0.1 8.4e-12 45.1 0.1 1.6 1 1 1 2 2 2 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|307596612|ref|YP_003902929.1| - 5.4e-10 39.0 1.0 1.4e-09 37.7 0.3 2.2 2 1 0 2 2 2 1 KaiC HHH_5 PF14520.6 gi|307596612|ref|YP_003902929.1| - 3.6e-09 37.1 2.4 2.8e-08 34.3 0.8 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|307596612|ref|YP_003902929.1| - 9.4e-09 35.1 0.0 2e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|307596612|ref|YP_003902929.1| - 0.0023 17.1 2.3 0.24 10.5 0.3 2.2 1 1 1 2 2 2 2 PAXNEB protein DNA_pol_lambd_f PF10391.9 gi|307596612|ref|YP_003902929.1| - 0.0031 17.3 0.1 0.035 14.0 0.0 2.6 2 1 0 2 2 2 1 Fingers domain of DNA polymerase lambda AAA_18 PF13238.6 gi|307596612|ref|YP_003902929.1| - 0.0042 17.6 0.0 0.013 16.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain BAF PF02961.14 gi|307596612|ref|YP_003902929.1| - 0.017 15.5 0.0 0.052 14.0 0.0 1.8 1 0 0 1 1 1 0 Barrier to autointegration factor AAA_22 PF13401.6 gi|307596612|ref|YP_003902929.1| - 0.019 15.3 0.1 0.052 13.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain HHH PF00633.23 gi|307596612|ref|YP_003902929.1| - 0.032 14.1 0.2 0.51 10.3 0.1 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif SRP54 PF00448.22 gi|307596612|ref|YP_003902929.1| - 0.033 13.8 0.0 0.059 13.0 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain HhH-GPD PF00730.25 gi|307596612|ref|YP_003902929.1| - 0.048 14.1 0.0 0.1 13.1 0.0 1.6 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein ABC_tran PF00005.27 gi|307596612|ref|YP_003902929.1| - 0.052 14.1 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|307596612|ref|YP_003902929.1| - 0.072 13.1 0.2 0.23 11.5 0.2 1.9 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|307596612|ref|YP_003902929.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Asp_protease_2 PF13650.6 gi|307596613|ref|YP_003902930.1| - 9.4e-06 26.2 0.1 1.4e-05 25.7 0.1 1.2 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|307596613|ref|YP_003902930.1| - 0.00014 22.3 0.0 0.00022 21.7 0.0 1.3 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|307596613|ref|YP_003902930.1| - 0.17 12.2 0.0 0.2 12.0 0.0 1.3 1 1 0 1 1 1 0 Retroviral aspartyl protease UPF0180 PF03698.13 gi|307596614|ref|YP_003902931.1| - 0.0051 17.0 0.4 0.0097 16.1 0.4 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0180) ATPase_2 PF01637.18 gi|307596616|ref|YP_003902933.1| - 9e-17 61.8 0.0 1.3e-16 61.2 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|307596616|ref|YP_003902933.1| - 5e-10 39.5 0.3 1.1e-07 31.9 0.2 2.6 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|307596616|ref|YP_003902933.1| - 2.5e-07 31.2 0.1 6.3e-07 29.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|307596616|ref|YP_003902933.1| - 2e-06 28.1 0.0 5.8e-06 26.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain TrmB PF01978.19 gi|307596616|ref|YP_003902933.1| - 0.0079 16.1 0.0 0.023 14.6 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4777 PF16007.5 gi|307596616|ref|YP_003902933.1| - 0.0084 16.3 0.0 0.021 15.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4777) AAA PF00004.29 gi|307596616|ref|YP_003902933.1| - 0.009 16.4 0.0 0.074 13.5 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_35 PF14516.6 gi|307596616|ref|YP_003902933.1| - 0.041 12.7 0.0 0.1 11.4 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain HxlR PF01638.17 gi|307596616|ref|YP_003902933.1| - 0.13 12.1 0.0 2.6 8.0 0.0 2.6 2 0 0 2 2 2 0 HxlR-like helix-turn-helix GlutR_dimer PF00745.20 gi|307596616|ref|YP_003902933.1| - 0.15 12.5 0.0 0.65 10.5 0.0 2.2 2 1 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain DUF4423 PF14394.6 gi|307596616|ref|YP_003902933.1| - 0.17 11.5 0.0 0.46 10.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DMRL_synthase PF00885.19 gi|307596617|ref|YP_003902934.1| - 4.8e-37 126.9 0.9 5.5e-37 126.7 0.9 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase NTPase_I-T PF01931.18 gi|307596618|ref|YP_003902935.1| - 1.6e-44 151.6 0.0 1.8e-44 151.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Hemopexin PF00045.19 gi|307596619|ref|YP_003902936.1| - 0.062 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Hemopexin DUF973 PF06157.11 gi|307596622|ref|YP_003902939.1| - 0.17 10.9 16.3 1.1 8.2 16.3 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF973) DHDPS PF00701.22 gi|307596623|ref|YP_003902940.1| - 2.1e-39 135.0 0.0 2.4e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AFOR_N PF02730.15 gi|307596624|ref|YP_003902941.1| - 8.6e-42 143.3 0.1 1.3e-41 142.7 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|307596624|ref|YP_003902941.1| - 6.2e-14 51.8 0.0 4.1e-13 49.1 0.0 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 MlaC PF05494.12 gi|307596624|ref|YP_003902941.1| - 0.015 15.1 0.1 0.99 9.1 0.0 3.1 3 0 0 3 3 3 0 MlaC protein CBS PF00571.28 gi|307596625|ref|YP_003902942.1| - 3.2e-26 91.5 4.7 8e-14 51.8 0.3 2.1 2 0 0 2 2 2 2 CBS domain Transketolase_C PF02780.20 gi|307596625|ref|YP_003902942.1| - 0.087 12.7 0.2 0.24 11.3 0.1 1.8 1 1 1 2 2 2 0 Transketolase, C-terminal domain RNA_pol_Rpc82 PF05645.13 gi|307596625|ref|YP_003902942.1| - 0.088 12.6 0.0 4.9 6.8 0.0 2.0 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 DUF1495 PF07381.11 gi|307596626|ref|YP_003902943.1| - 0.00054 19.7 0.0 0.0006 19.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Lipoprotein_Ltp PF07553.11 gi|307596626|ref|YP_003902943.1| - 0.0015 18.8 0.1 0.0025 18.1 0.1 1.3 1 0 0 1 1 1 1 Host cell surface-exposed lipoprotein Trans_reg_C PF00486.28 gi|307596626|ref|YP_003902943.1| - 0.0034 17.4 0.0 0.0039 17.2 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulatory protein, C terminal DsrD PF08679.11 gi|307596626|ref|YP_003902943.1| - 0.0072 16.6 0.6 0.0092 16.2 0.6 1.1 1 0 0 1 1 1 1 Dissimilatory sulfite reductase D (DsrD) Arg_repressor PF01316.21 gi|307596626|ref|YP_003902943.1| - 0.014 15.1 0.1 0.017 14.9 0.1 1.1 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain LexA_DNA_bind PF01726.16 gi|307596626|ref|YP_003902943.1| - 0.025 14.3 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain RNA_pol_Rpc34 PF05158.12 gi|307596626|ref|YP_003902943.1| - 0.034 13.5 0.0 0.034 13.5 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_20 PF12840.7 gi|307596626|ref|YP_003902943.1| - 0.039 14.0 0.0 0.045 13.8 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain z-alpha PF02295.17 gi|307596626|ref|YP_003902943.1| - 0.05 13.7 0.3 0.065 13.3 0.3 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain TrmB PF01978.19 gi|307596626|ref|YP_003902943.1| - 0.062 13.2 0.2 0.073 13.0 0.2 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ANAPC2 PF08672.11 gi|307596626|ref|YP_003902943.1| - 0.066 13.7 0.1 0.079 13.5 0.1 1.4 1 1 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 HemN_C PF06969.16 gi|307596626|ref|YP_003902943.1| - 0.092 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain DUF3253 PF11625.8 gi|307596626|ref|YP_003902943.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3253) FaeA PF04703.12 gi|307596626|ref|YP_003902943.1| - 0.12 12.7 0.1 0.17 12.3 0.1 1.2 1 0 0 1 1 1 0 FaeA-like protein Lactamase_B_2 PF12706.7 gi|307596627|ref|YP_003902944.1| - 1.9e-06 27.5 0.0 3.4e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|307596627|ref|YP_003902944.1| - 1.4e-05 25.2 0.6 0.027 14.5 0.1 2.5 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|307596627|ref|YP_003902944.1| - 2.9e-05 24.0 0.0 5.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Radical_SAM PF04055.21 gi|307596627|ref|YP_003902944.1| - 0.19 12.1 0.0 0.31 11.4 0.0 1.3 1 0 0 1 1 1 0 Radical SAM superfamily SAM_adeno_trans PF01887.16 gi|307596628|ref|YP_003902945.1| - 1.3e-83 280.0 0.0 1.5e-83 279.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase MazE_antitoxin PF04014.18 gi|307596628|ref|YP_003902945.1| - 0.1 12.5 0.3 0.62 10.1 0.1 2.4 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin DNA_binding_1 PF01035.20 gi|307596629|ref|YP_003902946.1| - 9.1e-24 83.4 0.0 1.5e-23 82.7 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain DUF411 PF04214.13 gi|307596629|ref|YP_003902946.1| - 0.045 13.7 0.2 0.98 9.4 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function, DUF HTH_17 PF12728.7 gi|307596629|ref|YP_003902946.1| - 0.15 12.3 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ThiS PF02597.20 gi|307596630|ref|YP_003902947.1| - 1.9e-11 44.4 0.1 2.1e-11 44.3 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|307596630|ref|YP_003902947.1| - 2.8e-08 34.0 0.1 3e-08 33.9 0.1 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) N_formyltrans_C PF18216.1 gi|307596630|ref|YP_003902947.1| - 0.011 15.4 0.0 0.068 12.9 0.0 2.1 1 1 1 2 2 2 0 N-formyltransferase dimerization C-terminal domain GHL10 PF02638.15 gi|307596631|ref|YP_003902948.1| - 0.094 11.8 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase-like 10 QRPTase_C PF01729.19 gi|307596632|ref|YP_003902949.1| - 1.3e-17 64.1 0.0 1.8e-17 63.6 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|307596632|ref|YP_003902949.1| - 9.8e-07 28.7 0.0 1.8e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|307596632|ref|YP_003902949.1| - 0.00014 22.3 0.0 0.036 14.4 0.0 2.2 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PDDEXK_10 PF07788.11 gi|307596632|ref|YP_003902949.1| - 0.003 17.5 0.0 3 7.8 0.0 2.4 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily NAPRTase_C PF17956.1 gi|307596632|ref|YP_003902949.1| - 0.015 15.7 0.0 0.033 14.6 0.0 1.5 1 0 0 1 1 1 0 Nicotinate phosphoribosyltransferase C-terminal domain THUMP PF02926.17 gi|307596634|ref|YP_003902951.1| - 8.5e-16 58.4 0.5 1.1e-15 58.0 0.5 1.2 1 0 0 1 1 1 1 THUMP domain NAD_binding_2 PF03446.15 gi|307596635|ref|YP_003902952.1| - 3.1e-21 76.2 0.1 8.2e-21 74.8 0.1 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|307596635|ref|YP_003902952.1| - 1.4e-13 51.2 0.0 2.2e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|307596635|ref|YP_003902952.1| - 4.3e-06 27.2 0.5 9.9e-06 26.1 0.0 1.9 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|307596635|ref|YP_003902952.1| - 6.5e-05 22.9 0.0 9.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|307596635|ref|YP_003902952.1| - 6.7e-05 23.0 0.0 0.00018 21.6 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|307596635|ref|YP_003902952.1| - 6.9e-05 22.3 0.0 0.00012 21.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|307596635|ref|YP_003902952.1| - 0.00057 19.6 0.0 0.00097 18.8 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|307596635|ref|YP_003902952.1| - 0.0008 19.4 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.6 gi|307596635|ref|YP_003902952.1| - 0.0021 18.0 0.0 0.0036 17.2 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|307596635|ref|YP_003902952.1| - 0.004 17.4 0.1 0.0069 16.6 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|307596635|ref|YP_003902952.1| - 0.022 14.3 0.1 0.034 13.7 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family UDPG_MGDP_dh_N PF03721.14 gi|307596635|ref|YP_003902952.1| - 0.025 14.2 0.0 0.2 11.2 0.0 2.1 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|307596635|ref|YP_003902952.1| - 0.033 13.7 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family adh_short PF00106.25 gi|307596635|ref|YP_003902952.1| - 0.056 12.9 0.0 0.088 12.3 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase TrkA_N PF02254.18 gi|307596635|ref|YP_003902952.1| - 0.059 13.6 0.0 0.15 12.3 0.0 1.8 1 1 0 1 1 1 0 TrkA-N domain DapB_N PF01113.20 gi|307596635|ref|YP_003902952.1| - 0.065 13.4 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Rossmann-like PF10727.9 gi|307596635|ref|YP_003902952.1| - 0.11 12.4 0.1 0.24 11.2 0.1 1.6 1 1 0 1 1 1 0 Rossmann-like domain Ribosomal_L31e PF01198.19 gi|307596636|ref|YP_003902953.1| - 7.6e-18 64.5 1.4 1e-17 64.1 1.2 1.3 1 1 0 1 1 1 1 Ribosomal protein L31e AAA PF00004.29 gi|307596637|ref|YP_003902954.1| - 1.3e-82 274.8 0.0 2.2e-41 141.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|307596637|ref|YP_003902954.1| - 3.5e-25 87.5 0.0 1.4e-13 50.4 0.0 2.6 2 0 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|307596637|ref|YP_003902954.1| - 2.8e-12 47.1 0.0 1.9e-05 24.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|307596637|ref|YP_003902954.1| - 6.3e-12 45.5 0.0 1.3e-05 25.0 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|307596637|ref|YP_003902954.1| - 3.5e-11 43.2 3.6 3.2e-05 23.9 0.2 4.3 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|307596637|ref|YP_003902954.1| - 4.4e-11 43.2 0.3 0.026 14.8 0.0 4.3 2 2 2 4 4 4 3 AAA domain AAA_16 PF13191.6 gi|307596637|ref|YP_003902954.1| - 7.5e-10 39.5 0.1 0.076 13.4 0.1 4.3 2 2 2 4 4 4 2 AAA ATPase domain Mg_chelatase PF01078.21 gi|307596637|ref|YP_003902954.1| - 5.7e-09 35.7 1.3 0.0016 17.8 0.2 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|307596637|ref|YP_003902954.1| - 5.8e-08 32.8 0.0 0.0068 16.4 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_18 PF13238.6 gi|307596637|ref|YP_003902954.1| - 6.9e-08 33.1 0.0 0.011 16.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|307596637|ref|YP_003902954.1| - 1.1e-07 31.7 0.0 0.0017 18.1 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_33 PF13671.6 gi|307596637|ref|YP_003902954.1| - 3.1e-07 30.7 0.0 0.0027 17.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|307596637|ref|YP_003902954.1| - 5.8e-06 26.2 0.0 0.0027 17.7 0.0 2.6 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_24 PF13479.6 gi|307596637|ref|YP_003902954.1| - 2.3e-05 24.2 0.0 0.33 10.7 0.0 3.2 2 1 1 3 3 3 2 AAA domain RNA_helicase PF00910.22 gi|307596637|ref|YP_003902954.1| - 3.3e-05 24.2 0.0 0.35 11.3 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|307596637|ref|YP_003902954.1| - 0.00011 21.7 0.0 0.17 11.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region TIP49 PF06068.13 gi|307596637|ref|YP_003902954.1| - 0.00014 21.2 0.1 0.26 10.5 0.0 2.3 2 0 0 2 2 2 2 TIP49 P-loop domain TsaE PF02367.17 gi|307596637|ref|YP_003902954.1| - 0.00015 21.8 0.1 0.25 11.3 0.0 2.7 3 0 0 3 3 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|307596637|ref|YP_003902954.1| - 0.00017 21.6 0.0 4.9 7.0 0.0 3.5 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|307596637|ref|YP_003902954.1| - 0.00017 21.5 0.1 0.22 11.4 0.0 3.5 2 1 1 3 3 3 1 NACHT domain AAA_3 PF07726.11 gi|307596637|ref|YP_003902954.1| - 0.00025 20.9 0.1 0.65 9.9 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|307596637|ref|YP_003902954.1| - 0.00036 20.3 0.0 0.73 9.5 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_28 PF13521.6 gi|307596637|ref|YP_003902954.1| - 0.0005 20.4 0.0 0.15 12.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|307596637|ref|YP_003902954.1| - 0.00057 20.4 0.0 0.34 11.4 0.0 2.4 2 0 0 2 2 2 1 ABC transporter AAA_17 PF13207.6 gi|307596637|ref|YP_003902954.1| - 0.00083 19.8 0.0 0.48 10.9 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|307596637|ref|YP_003902954.1| - 0.0011 18.6 1.5 1 8.9 0.0 3.5 4 0 0 4 4 4 1 AAA domain TniB PF05621.11 gi|307596637|ref|YP_003902954.1| - 0.0012 18.3 0.1 21 4.5 0.0 4.0 4 1 1 5 5 4 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|307596637|ref|YP_003902954.1| - 0.0016 18.4 0.7 1.1 9.1 0.0 3.2 3 1 0 3 3 2 1 NTPase DUF815 PF05673.13 gi|307596637|ref|YP_003902954.1| - 0.0023 17.1 0.0 1.4 8.0 0.0 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF815) AAA_19 PF13245.6 gi|307596637|ref|YP_003902954.1| - 0.0033 17.8 0.5 2.8 8.3 0.0 3.2 2 1 1 3 3 3 1 AAA domain MCM PF00493.23 gi|307596637|ref|YP_003902954.1| - 0.0066 15.6 0.0 2.9 6.9 0.0 2.7 3 0 0 3 3 3 1 MCM P-loop domain Zeta_toxin PF06414.12 gi|307596637|ref|YP_003902954.1| - 0.014 14.7 0.1 0.97 8.7 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin SKI PF01202.22 gi|307596637|ref|YP_003902954.1| - 0.016 15.3 0.0 1.8 8.7 0.0 2.3 2 0 0 2 2 2 0 Shikimate kinase AAA_30 PF13604.6 gi|307596637|ref|YP_003902954.1| - 0.018 14.7 0.2 4.5 6.9 0.0 3.0 2 1 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|307596637|ref|YP_003902954.1| - 0.058 12.7 0.7 16 4.8 0.0 3.1 3 0 0 3 3 3 0 KaiC PhoH PF02562.16 gi|307596637|ref|YP_003902954.1| - 0.066 12.6 0.1 14 5.1 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein Bac_DnaA PF00308.18 gi|307596637|ref|YP_003902954.1| - 0.067 13.0 0.8 69 3.2 0.0 3.5 4 0 0 4 4 3 0 Bacterial dnaA protein Rad17 PF03215.15 gi|307596637|ref|YP_003902954.1| - 0.071 13.0 0.0 11 5.9 0.0 2.8 2 1 0 2 2 2 0 Rad17 P-loop domain AFG1_ATPase PF03969.16 gi|307596637|ref|YP_003902954.1| - 0.078 11.9 0.0 11 4.8 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase NB-ARC PF00931.22 gi|307596637|ref|YP_003902954.1| - 0.086 12.0 0.2 8 5.6 0.0 2.5 2 1 0 2 2 2 0 NB-ARC domain Cytidylate_kin PF02224.18 gi|307596637|ref|YP_003902954.1| - 0.13 11.9 0.0 20 4.8 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase Sigma54_activ_2 PF14532.6 gi|307596637|ref|YP_003902954.1| - 0.17 12.0 0.0 30 4.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|307596637|ref|YP_003902954.1| - 0.22 10.6 0.2 3.6 6.6 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 zf_CopZ PF18423.1 gi|307596639|ref|YP_003902956.1| - 0.27 11.2 0.8 0.74 9.8 0.2 2.0 2 0 0 2 2 2 0 Zinc binding domain DMRL_synthase PF00885.19 gi|307596640|ref|YP_003902957.1| - 4.2e-12 46.1 0.0 4.9e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Glyco_hydro_57 PF03065.15 gi|307596642|ref|YP_003902959.1| - 3.1e-49 167.9 0.0 4.4e-49 167.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Vulcanisaeta_distributa_DSM_14429_uid52827/NC_014537.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Vulcanisaeta_distributa_DSM_14429_uid52827/NC_014537.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Vulcanisaeta_distributa_DSM_14429_uid52827/NC_014537.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Vulcanisaeta_distributa_DSM_14429_uid52827/NC_014537.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:18:36 2019 # [ok]