#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.11	gi|296241749|ref|YP_003649236.1|	-	4.4e-19	68.2	0.5	2e-17	62.9	0.1	3.0	3	0	0	3	3	3	1	CDC6,	C	terminal	winged	helix	domain
AAA	PF00004.29	gi|296241749|ref|YP_003649236.1|	-	3.7e-10	40.3	0.0	8.8e-10	39.1	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|296241749|ref|YP_003649236.1|	-	1.1e-09	39.0	0.4	2.8e-08	34.3	0.1	2.5	2	1	0	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|296241749|ref|YP_003649236.1|	-	1.7e-09	38.0	0.0	6e-09	36.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
TniB	PF05621.11	gi|296241749|ref|YP_003649236.1|	-	2.3e-08	33.7	0.0	3.9e-08	32.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|296241749|ref|YP_003649236.1|	-	0.00012	22.0	0.4	0.00041	20.3	0.4	1.8	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF2075	PF09848.9	gi|296241749|ref|YP_003649236.1|	-	0.0025	17.1	0.0	0.0036	16.6	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Sigma54_activat	PF00158.26	gi|296241749|ref|YP_003649236.1|	-	0.0036	17.0	0.0	0.0072	16.1	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
DUF815	PF05673.13	gi|296241749|ref|YP_003649236.1|	-	0.0043	16.2	0.0	0.0092	15.2	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_assoc_2	PF16193.5	gi|296241749|ref|YP_003649236.1|	-	0.0074	16.6	0.1	0.024	15.0	0.1	1.9	1	0	0	1	1	1	1	AAA	C-terminal	domain
DEAD	PF00270.29	gi|296241749|ref|YP_003649236.1|	-	0.0079	16.0	0.7	0.47	10.2	0.2	2.3	1	1	1	2	2	2	1	DEAD/DEAH	box	helicase
AAA_18	PF13238.6	gi|296241749|ref|YP_003649236.1|	-	0.015	15.9	0.0	0.03	14.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
TIP49_C	PF17856.1	gi|296241749|ref|YP_003649236.1|	-	0.017	15.2	0.0	0.075	13.2	0.0	2.1	1	0	0	1	1	1	0	TIP49	AAA-lid	domain
IstB_IS21	PF01695.17	gi|296241749|ref|YP_003649236.1|	-	0.025	14.3	0.0	1.8	8.2	0.0	2.5	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_30	PF13604.6	gi|296241749|ref|YP_003649236.1|	-	0.027	14.2	0.0	0.061	13.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|296241749|ref|YP_003649236.1|	-	0.031	13.9	2.1	2.6	7.6	0.2	3.0	2	1	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|296241749|ref|YP_003649236.1|	-	0.046	12.9	0.0	0.074	12.2	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
Sigma54_activ_2	PF14532.6	gi|296241749|ref|YP_003649236.1|	-	0.05	13.7	0.0	0.13	12.4	0.0	1.7	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|296241749|ref|YP_003649236.1|	-	0.069	12.9	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|296241749|ref|YP_003649236.1|	-	0.078	12.5	0.0	0.16	11.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
TsaE	PF02367.17	gi|296241749|ref|YP_003649236.1|	-	0.083	12.9	0.0	0.16	12.0	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
RNA_helicase	PF00910.22	gi|296241749|ref|YP_003649236.1|	-	0.085	13.3	0.0	0.18	12.2	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_5	PF07728.14	gi|296241749|ref|YP_003649236.1|	-	0.1	12.6	0.2	0.37	10.8	0.2	2.0	1	1	1	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|296241749|ref|YP_003649236.1|	-	0.12	12.3	0.0	0.4	10.6	0.0	1.9	2	1	0	2	2	2	0	NACHT	domain
AAA_lid_10	PF17872.1	gi|296241749|ref|YP_003649236.1|	-	0.15	12.2	0.2	0.39	10.9	0.2	1.7	1	0	0	1	1	1	0	AAA	lid	domain
DUF99	PF01949.16	gi|296241750|ref|YP_003649237.1|	-	2.4e-49	167.2	0.0	2.7e-49	167.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
Ubiq-assoc	PF09145.10	gi|296241750|ref|YP_003649237.1|	-	0.035	14.1	0.0	0.071	13.1	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin-associated
PEPCK_GTP	PF00821.18	gi|296241751|ref|YP_003649238.1|	-	7.4e-101	337.5	0.0	1e-100	337.1	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase	C-terminal	P-loop	domain
PEPCK_N	PF17297.2	gi|296241751|ref|YP_003649238.1|	-	1.9e-61	207.5	0.0	2.5e-61	207.1	0.0	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase	N-terminal	domain
Aminotran_3	PF00202.21	gi|296241752|ref|YP_003649239.1|	-	5.2e-104	348.1	0.0	6.1e-104	347.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Phage_holin_3_6	PF07332.11	gi|296241753|ref|YP_003649240.1|	-	0.11	12.6	3.4	0.17	11.9	3.4	1.3	1	1	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Spo7	PF03907.13	gi|296241753|ref|YP_003649240.1|	-	0.21	11.0	0.1	0.25	10.8	0.1	1.0	1	0	0	1	1	1	0	Spo7-like	protein
Radical_SAM	PF04055.21	gi|296241754|ref|YP_003649241.1|	-	4.5e-25	89.0	0.0	4.5e-25	89.0	0.0	2.4	3	0	0	3	3	3	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|296241754|ref|YP_003649241.1|	-	9.9e-10	38.6	0.5	3e-09	37.0	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|296241754|ref|YP_003649241.1|	-	3.2e-08	33.9	0.0	8.1e-08	32.6	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
zf-CHC2	PF01807.20	gi|296241754|ref|YP_003649241.1|	-	0.093	12.5	0.5	2.8	7.8	0.3	2.5	2	0	0	2	2	2	0	CHC2	zinc	finger
AP_endonuc_2	PF01261.24	gi|296241754|ref|YP_003649241.1|	-	0.12	11.7	0.0	1.3	8.4	0.0	2.0	1	1	1	2	2	2	0	Xylose	isomerase-like	TIM	barrel
AAA_18	PF13238.6	gi|296241755|ref|YP_003649242.1|	-	4.8e-23	82.1	0.1	7.2e-23	81.6	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|296241755|ref|YP_003649242.1|	-	8.9e-07	29.4	0.0	2.2e-06	28.2	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|296241755|ref|YP_003649242.1|	-	3.2e-05	24.4	0.0	0.00011	22.6	0.0	1.9	1	1	1	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|296241755|ref|YP_003649242.1|	-	3.8e-05	23.7	0.0	5.5e-05	23.2	0.0	1.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|296241755|ref|YP_003649242.1|	-	6.5e-05	23.1	0.1	0.00037	20.7	0.0	2.0	1	1	0	2	2	2	1	AAA	domain
KTI12	PF08433.10	gi|296241755|ref|YP_003649242.1|	-	0.00018	21.0	0.0	0.00028	20.4	0.0	1.2	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_24	PF13479.6	gi|296241755|ref|YP_003649242.1|	-	0.00025	20.8	0.0	0.00041	20.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|296241755|ref|YP_003649242.1|	-	0.00033	20.9	0.0	0.00048	20.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|296241755|ref|YP_003649242.1|	-	0.0004	20.7	0.1	0.00072	19.8	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
Viral_helicase1	PF01443.18	gi|296241755|ref|YP_003649242.1|	-	0.00055	19.7	0.0	0.00081	19.2	0.0	1.3	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
AAA_16	PF13191.6	gi|296241755|ref|YP_003649242.1|	-	0.00066	20.1	0.0	0.00091	19.6	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|296241755|ref|YP_003649242.1|	-	0.00072	19.6	0.0	0.0013	18.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
TIP49	PF06068.13	gi|296241755|ref|YP_003649242.1|	-	0.0022	17.2	0.1	0.0026	17.0	0.1	1.3	1	0	0	1	1	1	1	TIP49	P-loop	domain
Cytidylate_kin	PF02224.18	gi|296241755|ref|YP_003649242.1|	-	0.0025	17.6	0.0	0.011	15.5	0.0	1.9	2	0	0	2	2	2	1	Cytidylate	kinase
AAA_30	PF13604.6	gi|296241755|ref|YP_003649242.1|	-	0.0026	17.5	0.1	0.0048	16.6	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|296241755|ref|YP_003649242.1|	-	0.0055	16.0	0.1	0.013	14.8	0.0	1.5	1	1	0	1	1	1	1	Zeta	toxin
SKI	PF01202.22	gi|296241755|ref|YP_003649242.1|	-	0.0062	16.7	0.0	0.012	15.7	0.0	1.5	1	0	0	1	1	1	1	Shikimate	kinase
DUF2075	PF09848.9	gi|296241755|ref|YP_003649242.1|	-	0.0063	15.8	0.0	0.0075	15.5	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
ABC_tran	PF00005.27	gi|296241755|ref|YP_003649242.1|	-	0.0073	16.8	0.0	0.011	16.3	0.0	1.3	1	1	0	1	1	1	1	ABC	transporter
RNA_helicase	PF00910.22	gi|296241755|ref|YP_003649242.1|	-	0.0096	16.3	0.0	0.016	15.5	0.0	1.6	2	0	0	2	2	1	1	RNA	helicase
NACHT	PF05729.12	gi|296241755|ref|YP_003649242.1|	-	0.012	15.5	0.0	0.018	14.9	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
APS_kinase	PF01583.20	gi|296241755|ref|YP_003649242.1|	-	0.012	15.5	0.0	0.019	14.9	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
dNK	PF01712.19	gi|296241755|ref|YP_003649242.1|	-	0.016	15.0	0.1	0.39	10.6	0.1	2.1	1	1	1	2	2	2	0	Deoxynucleoside	kinase
6PF2K	PF01591.18	gi|296241755|ref|YP_003649242.1|	-	0.019	14.3	0.1	0.036	13.4	0.0	1.4	2	0	0	2	2	1	0	6-phosphofructo-2-kinase
NTPase_1	PF03266.15	gi|296241755|ref|YP_003649242.1|	-	0.02	14.8	0.1	0.046	13.6	0.0	1.7	2	0	0	2	2	2	0	NTPase
PRK	PF00485.18	gi|296241755|ref|YP_003649242.1|	-	0.026	14.3	0.0	0.047	13.4	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
MMR_HSR1	PF01926.23	gi|296241755|ref|YP_003649242.1|	-	0.03	14.4	0.1	0.068	13.3	0.1	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.6	gi|296241755|ref|YP_003649242.1|	-	0.031	13.9	0.3	0.12	11.9	0.1	2.0	1	1	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|296241755|ref|YP_003649242.1|	-	0.037	13.4	0.0	0.054	12.9	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Ploopntkinase3	PF18751.1	gi|296241755|ref|YP_003649242.1|	-	0.041	13.8	0.0	0.057	13.3	0.0	1.4	1	1	0	1	1	1	0	P-loop	Nucleotide	Kinase3
AAA_3	PF07726.11	gi|296241755|ref|YP_003649242.1|	-	0.052	13.4	0.0	0.11	12.3	0.0	1.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase	PF06745.13	gi|296241755|ref|YP_003649242.1|	-	0.062	12.6	0.3	0.13	11.6	0.1	1.7	1	1	1	2	2	2	0	KaiC
Thymidylate_kin	PF02223.17	gi|296241755|ref|YP_003649242.1|	-	0.064	12.9	0.0	0.38	10.4	0.0	2.0	2	1	0	2	2	2	0	Thymidylate	kinase
MeaB	PF03308.16	gi|296241755|ref|YP_003649242.1|	-	0.067	12.2	0.0	0.094	11.7	0.0	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DnaB_C	PF03796.15	gi|296241755|ref|YP_003649242.1|	-	0.13	11.5	0.0	0.16	11.2	0.0	1.3	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
SRP54	PF00448.22	gi|296241755|ref|YP_003649242.1|	-	0.18	11.4	0.2	0.49	10.0	0.0	1.8	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
AAA_7	PF12775.7	gi|296241755|ref|YP_003649242.1|	-	0.2	11.1	0.0	0.3	10.6	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
MMR_HSR1	PF01926.23	gi|296241756|ref|YP_003649243.1|	-	2.8e-16	59.6	0.0	1.3e-12	47.8	0.0	2.2	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|296241756|ref|YP_003649243.1|	-	6.6e-15	55.4	0.0	1.1e-14	54.7	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
FeoB_N	PF02421.18	gi|296241756|ref|YP_003649243.1|	-	5.1e-09	35.8	0.0	1.2e-05	24.9	0.0	2.1	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|296241756|ref|YP_003649243.1|	-	2.4e-08	34.2	0.0	0.0091	16.1	0.0	3.2	3	0	0	3	3	3	3	Dynamin	family
GTP_EFTU	PF00009.27	gi|296241756|ref|YP_003649243.1|	-	0.00098	18.7	0.1	0.0068	16.0	0.0	2.0	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
Shikimate_DH	PF01488.20	gi|296241756|ref|YP_003649243.1|	-	0.031	14.4	0.0	0.061	13.4	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
AAA_16	PF13191.6	gi|296241756|ref|YP_003649243.1|	-	0.047	14.1	0.0	0.19	12.1	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
PduV-EutP	PF10662.9	gi|296241756|ref|YP_003649243.1|	-	0.072	12.8	0.0	0.47	10.2	0.0	2.1	2	1	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Roc	PF08477.13	gi|296241756|ref|YP_003649243.1|	-	0.12	12.6	0.0	14	5.9	0.0	2.3	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
cobW	PF02492.19	gi|296241756|ref|YP_003649243.1|	-	0.18	11.4	0.0	0.6	9.7	0.0	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_18	PF13238.6	gi|296241756|ref|YP_003649243.1|	-	0.19	12.3	0.0	0.49	11.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|296241756|ref|YP_003649243.1|	-	0.2	10.9	0.1	0.81	8.9	0.0	1.9	1	1	1	2	2	2	0	Zeta	toxin
IIGP	PF05049.13	gi|296241756|ref|YP_003649243.1|	-	0.25	10.3	0.0	0.39	9.7	0.0	1.2	1	0	0	1	1	1	0	Interferon-inducible	GTPase	(IIGP)
ThiS	PF02597.20	gi|296241757|ref|YP_003649244.1|	-	2.7e-05	24.7	1.0	3e-05	24.6	1.0	1.0	1	0	0	1	1	1	1	ThiS	family
ThiF	PF00899.21	gi|296241758|ref|YP_003649245.1|	-	4.7e-67	225.9	0.0	5.5e-67	225.7	0.0	1.0	1	0	0	1	1	1	1	ThiF	family
Sacchrp_dh_NADP	PF03435.18	gi|296241758|ref|YP_003649245.1|	-	2.9e-07	30.8	0.2	6.7e-07	29.6	0.2	1.5	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Shikimate_DH	PF01488.20	gi|296241758|ref|YP_003649245.1|	-	0.026	14.6	2.3	0.085	12.9	1.1	2.4	1	1	1	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|296241758|ref|YP_003649245.1|	-	0.066	13.7	0.1	0.13	12.8	0.1	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
DUF287	PF03384.14	gi|296241758|ref|YP_003649245.1|	-	0.1	13.0	0.9	0.22	11.9	0.9	1.6	1	0	0	1	1	1	0	Drosophila	protein	of	unknown	function,	DUF287
2-Hacid_dh_C	PF02826.19	gi|296241758|ref|YP_003649245.1|	-	0.14	11.5	0.5	0.27	10.6	0.5	1.6	1	1	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|296241758|ref|YP_003649245.1|	-	0.33	11.2	1.9	0.53	10.6	0.4	2.0	1	1	1	2	2	2	0	TrkA-N	domain
PglD_N	PF17836.1	gi|296241758|ref|YP_003649245.1|	-	1	10.0	4.2	0.88	10.2	1.0	2.4	3	1	0	3	3	3	0	PglD	N-terminal	domain
ThiS	PF02597.20	gi|296241759|ref|YP_003649246.1|	-	1.2e-07	32.3	0.0	1.5e-07	31.9	0.0	1.2	1	0	0	1	1	1	1	ThiS	family
TGS	PF02824.21	gi|296241759|ref|YP_003649246.1|	-	0.1	12.7	0.0	1.7	8.8	0.0	2.1	2	0	0	2	2	2	0	TGS	domain
Ub-RnfH	PF03658.14	gi|296241759|ref|YP_003649246.1|	-	0.11	12.9	0.0	0.54	10.7	0.0	1.9	1	1	0	1	1	1	0	RnfH	family	Ubiquitin
Terpene_synth	PF01397.21	gi|296241759|ref|YP_003649246.1|	-	0.2	11.3	0.0	0.22	11.2	0.0	1.1	1	0	0	1	1	1	0	Terpene	synthase,	N-terminal	domain
ThiS	PF02597.20	gi|296241760|ref|YP_003649247.1|	-	0.0019	18.8	0.3	0.002	18.7	0.3	1.1	1	0	0	1	1	1	1	ThiS	family
DDE_Tnp_1_2	PF13586.6	gi|296241760|ref|YP_003649247.1|	-	0.11	12.8	0.0	0.12	12.7	0.0	1.1	1	0	0	1	1	1	0	Transposase	DDE	domain
PALP	PF00291.25	gi|296241761|ref|YP_003649248.1|	-	2.7e-14	53.3	0.2	4.3e-06	26.3	0.0	3.4	3	1	1	4	4	4	3	Pyridoxal-phosphate	dependent	enzyme
Prok-RING_1	PF14446.6	gi|296241761|ref|YP_003649248.1|	-	0.025	14.5	0.6	0.044	13.7	0.6	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
TrmB	PF01978.19	gi|296241761|ref|YP_003649248.1|	-	0.034	14.0	0.1	0.11	12.4	0.1	1.9	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Lar_restr_allev	PF14354.6	gi|296241761|ref|YP_003649248.1|	-	0.055	13.9	0.1	0.15	12.5	0.1	1.7	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
HypA	PF01155.19	gi|296241761|ref|YP_003649248.1|	-	0.18	11.8	0.1	0.42	10.7	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|296241761|ref|YP_003649248.1|	-	5.7	6.8	6.9	3.1	7.7	4.4	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
SNO	PF01174.19	gi|296241762|ref|YP_003649249.1|	-	3.7e-53	180.2	0.0	4.1e-53	180.0	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|296241762|ref|YP_003649249.1|	-	6.2e-11	42.3	0.0	7.5e-11	42.0	0.0	1.1	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.17	gi|296241762|ref|YP_003649249.1|	-	5.8e-06	26.1	0.1	7.3e-06	25.8	0.1	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
GATase	PF00117.28	gi|296241762|ref|YP_003649249.1|	-	1.4e-05	25.0	0.0	2.4e-05	24.2	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.24	gi|296241762|ref|YP_003649249.1|	-	0.012	15.4	0.1	0.019	14.8	0.1	1.3	1	0	0	1	1	1	0	DJ-1/PfpI	family
ThiJ_like	PF17124.5	gi|296241762|ref|YP_003649249.1|	-	0.033	13.9	0.0	0.045	13.4	0.0	1.2	1	0	0	1	1	1	0	ThiJ/PfpI	family-like
BPL_N	PF09825.9	gi|296241762|ref|YP_003649249.1|	-	0.059	12.4	0.0	0.15	11.1	0.0	1.6	2	0	0	2	2	2	0	Biotin-protein	ligase,	N	terminal
SOR_SNZ	PF01680.17	gi|296241763|ref|YP_003649250.1|	-	4.6e-91	304.2	0.0	6.2e-91	303.8	0.0	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|296241763|ref|YP_003649250.1|	-	4.8e-08	32.6	3.0	1.2e-06	28.0	0.1	2.3	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.17	gi|296241763|ref|YP_003649250.1|	-	3.3e-05	23.1	1.2	0.12	11.5	0.0	2.9	3	1	0	3	3	3	2	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|296241763|ref|YP_003649250.1|	-	0.00029	20.4	0.6	0.11	12.0	0.2	3.1	2	1	0	2	2	2	1	Histidine	biosynthesis	protein
NanE	PF04131.14	gi|296241763|ref|YP_003649250.1|	-	0.0013	17.9	0.4	0.26	10.5	0.0	3.0	2	1	1	3	3	3	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
NMO	PF03060.15	gi|296241763|ref|YP_003649250.1|	-	0.0022	17.4	2.1	0.021	14.2	0.1	2.2	2	0	0	2	2	2	1	Nitronate	monooxygenase
TetR_C_27	PF17935.1	gi|296241763|ref|YP_003649250.1|	-	0.0055	16.7	0.0	0.011	15.8	0.0	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
IGPS	PF00218.21	gi|296241763|ref|YP_003649250.1|	-	0.017	14.3	0.0	0.65	9.1	0.0	2.3	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
Trp_syntA	PF00290.20	gi|296241763|ref|YP_003649250.1|	-	0.11	11.3	0.0	0.22	10.3	0.0	1.5	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
FMN_dh	PF01070.18	gi|296241763|ref|YP_003649250.1|	-	0.17	10.9	2.4	1.7	7.6	0.1	2.6	2	1	1	3	3	3	0	FMN-dependent	dehydrogenase
CitMHS	PF03600.16	gi|296241764|ref|YP_003649251.1|	-	2.8e-27	95.7	22.9	2.8e-27	95.7	22.9	2.3	1	1	1	2	2	2	2	Citrate	transporter
ArsB	PF02040.15	gi|296241764|ref|YP_003649251.1|	-	2.3e-12	47.0	29.0	9.5e-12	44.9	28.6	2.1	1	1	0	1	1	1	1	Arsenical	pump	membrane	protein
Na_sulph_symp	PF00939.19	gi|296241764|ref|YP_003649251.1|	-	1.3e-08	34.4	32.2	8.9e-05	21.7	16.7	2.6	2	1	0	2	2	2	2	Sodium:sulfate	symporter	transmembrane	region
DUF2148	PF09918.9	gi|296241765|ref|YP_003649252.1|	-	7.2e-30	102.8	2.1	2e-29	101.4	0.1	2.2	2	0	0	2	2	2	1	Uncharacterized	protein	containing	a	ferredoxin	domain	(DUF2148)
DUF4439	PF14530.6	gi|296241765|ref|YP_003649252.1|	-	0.097	13.4	0.0	0.14	12.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4439)
MACPF	PF01823.19	gi|296241765|ref|YP_003649252.1|	-	0.11	12.5	0.0	0.15	12.1	0.0	1.3	1	0	0	1	1	1	0	MAC/Perforin	domain
TrmO	PF01980.16	gi|296241767|ref|YP_003649254.1|	-	1.4e-29	102.7	0.0	2.2e-29	102.1	0.0	1.2	1	0	0	1	1	1	1	tRNA-methyltransferase	O
Sacchrp_dh_C	PF16653.5	gi|296241768|ref|YP_003649255.1|	-	1.7e-22	80.8	0.0	2.2e-22	80.5	0.0	1.1	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	C-terminal	domain
Semialdhyde_dh	PF01118.24	gi|296241768|ref|YP_003649255.1|	-	0.0018	18.7	0.0	0.0049	17.3	0.0	1.7	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|296241768|ref|YP_003649255.1|	-	0.011	16.0	0.1	0.073	13.3	0.1	2.3	2	1	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
AlaDh_PNT_C	PF01262.21	gi|296241768|ref|YP_003649255.1|	-	0.026	13.8	0.0	0.042	13.1	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|296241768|ref|YP_003649255.1|	-	0.073	12.4	0.0	0.12	11.7	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|296241768|ref|YP_003649255.1|	-	0.12	12.7	0.0	0.21	11.9	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
DUF5007	PF16398.5	gi|296241768|ref|YP_003649255.1|	-	0.14	11.9	0.0	0.18	11.5	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5007)
Zip	PF02535.22	gi|296241769|ref|YP_003649256.1|	-	1e-18	67.7	26.0	1.9e-17	63.5	11.1	2.1	1	1	0	2	2	2	2	ZIP	Zinc	transporter
DUF1129	PF06570.11	gi|296241769|ref|YP_003649256.1|	-	0.014	14.9	2.0	0.072	12.6	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
RexB	PF15968.5	gi|296241769|ref|YP_003649256.1|	-	0.04	14.4	0.6	0.04	14.4	0.6	1.9	2	0	0	2	2	2	0	Membrane-anchored	ion	channel,	Abi	component
DUF3087	PF11286.8	gi|296241769|ref|YP_003649256.1|	-	0.13	11.7	0.5	0.37	10.3	0.5	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3087)
SIS	PF01380.22	gi|296241770|ref|YP_003649257.1|	-	1.1e-41	141.7	0.2	1.1e-26	93.2	0.2	2.3	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|296241770|ref|YP_003649257.1|	-	1.5e-16	60.8	0.0	2.7e-16	60.0	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|296241770|ref|YP_003649257.1|	-	2.5e-13	50.0	0.0	4.2e-13	49.3	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|296241770|ref|YP_003649257.1|	-	2e-07	31.1	0.1	8.8e-05	22.5	0.0	3.2	3	0	0	3	3	3	1	SIS	domain
DUF4350	PF14258.6	gi|296241770|ref|YP_003649257.1|	-	0.02	15.3	0.0	0.18	12.3	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4350)
GATase_4	PF13230.6	gi|296241770|ref|YP_003649257.1|	-	0.032	13.1	0.1	0.049	12.5	0.1	1.2	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
bact-PGI_C	PF10432.9	gi|296241770|ref|YP_003649257.1|	-	0.066	13.3	0.1	1	9.4	0.1	2.3	1	1	0	1	1	1	0	Bacterial	phospho-glucose	isomerase	C-terminal	SIS	domain
AA_kinase	PF00696.28	gi|296241771|ref|YP_003649258.1|	-	1.7e-16	60.6	0.1	1.4e-15	57.6	0.1	1.9	1	1	0	1	1	1	1	Amino	acid	kinase	family
SpoU_methylase	PF00588.19	gi|296241772|ref|YP_003649259.1|	-	1.6e-32	112.6	0.0	2.3e-32	112.1	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.9	gi|296241772|ref|YP_003649259.1|	-	9.1e-08	32.2	0.0	1.2e-05	25.2	0.0	2.4	1	1	0	1	1	1	1	SAM-dependent	RNA	methyltransferase
MTS	PF05175.14	gi|296241773|ref|YP_003649260.1|	-	3e-16	59.4	0.0	1.2e-15	57.4	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|296241773|ref|YP_003649260.1|	-	1.6e-07	31.9	0.1	1.2e-06	29.0	0.1	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|296241773|ref|YP_003649260.1|	-	9.1e-06	25.7	0.0	0.00018	21.5	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296241773|ref|YP_003649260.1|	-	6.9e-05	23.5	0.0	0.00088	19.9	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|296241773|ref|YP_003649260.1|	-	0.00033	20.5	0.0	0.00044	20.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|296241773|ref|YP_003649260.1|	-	0.0064	16.2	0.7	0.0093	15.7	0.7	1.3	1	0	0	1	1	1	1	Lysine	methyltransferase
PrmA	PF06325.13	gi|296241773|ref|YP_003649260.1|	-	0.013	14.9	0.3	0.022	14.1	0.3	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Ubie_methyltran	PF01209.18	gi|296241773|ref|YP_003649260.1|	-	0.015	14.6	0.0	0.019	14.3	0.0	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|296241773|ref|YP_003649260.1|	-	0.02	14.7	0.1	0.03	14.2	0.1	1.3	1	1	0	1	1	1	0	Hypothetical	methyltransferase
UPF0020	PF01170.18	gi|296241773|ref|YP_003649260.1|	-	0.027	14.2	0.0	0.082	12.6	0.0	1.7	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_12	PF08242.12	gi|296241773|ref|YP_003649260.1|	-	0.031	15.0	0.0	0.087	13.6	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.20	gi|296241774|ref|YP_003649261.1|	-	2.6e-35	121.8	0.0	3.2e-35	121.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|296241774|ref|YP_003649261.1|	-	0.00089	19.9	0.0	0.0019	18.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
DUF2590	PF10761.9	gi|296241774|ref|YP_003649261.1|	-	0.0027	17.8	0.3	0.84	9.8	0.1	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2590)
PCMT	PF01135.19	gi|296241774|ref|YP_003649261.1|	-	0.0069	16.2	0.1	0.089	12.5	0.0	2.0	2	0	0	2	2	2	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.14	gi|296241774|ref|YP_003649261.1|	-	0.01	15.4	0.0	0.023	14.3	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|296241774|ref|YP_003649261.1|	-	0.022	15.4	0.0	0.045	14.4	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Toxin_33	PF08121.11	gi|296241774|ref|YP_003649261.1|	-	0.096	12.5	0.2	0.18	11.7	0.2	1.4	1	0	0	1	1	1	0	Waglerin	family
Methyltransf_12	PF08242.12	gi|296241774|ref|YP_003649261.1|	-	0.11	13.3	0.0	0.27	12.0	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|296241774|ref|YP_003649261.1|	-	0.13	12.1	0.0	0.23	11.3	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|296241774|ref|YP_003649261.1|	-	0.2	11.4	0.0	0.24	11.2	0.0	1.3	1	1	0	1	1	1	0	Methyltransferase	domain
DUF655	PF04919.12	gi|296241775|ref|YP_003649262.1|	-	3.2e-61	206.4	0.8	3.7e-61	206.2	0.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.6	gi|296241775|ref|YP_003649262.1|	-	0.00024	21.3	0.1	0.0004	20.6	0.1	1.4	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|296241775|ref|YP_003649262.1|	-	0.069	13.1	0.4	0.18	11.8	0.0	1.9	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|296241775|ref|YP_003649262.1|	-	0.11	12.8	0.1	0.26	11.6	0.0	1.6	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
Sigma70_ECF	PF07638.11	gi|296241775|ref|YP_003649262.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.5	1	1	0	1	1	1	0	ECF	sigma	factor
RNA_pol_Rpb4	PF03874.16	gi|296241776|ref|YP_003649263.1|	-	4.2e-10	40.0	0.4	1.4e-09	38.3	0.4	1.7	1	1	0	1	1	1	1	RNA	polymerase	Rpb4
Ribosomal_L21e	PF01157.18	gi|296241777|ref|YP_003649264.1|	-	2.7e-36	123.5	0.3	3e-36	123.3	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
THUMP	PF02926.17	gi|296241778|ref|YP_003649265.1|	-	1.8e-08	34.6	3.5	2.2e-08	34.3	0.4	2.2	2	0	0	2	2	2	1	THUMP	domain
SRP54	PF00448.22	gi|296241780|ref|YP_003649267.1|	-	6.9e-75	251.0	0.0	9.8e-75	250.5	0.0	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|296241780|ref|YP_003649267.1|	-	2.1e-24	86.0	0.0	6.7e-24	84.4	0.0	1.8	2	0	0	2	2	1	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|296241780|ref|YP_003649267.1|	-	2.7e-11	43.5	0.7	2.7e-11	43.5	0.7	3.2	3	1	0	3	3	3	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|296241780|ref|YP_003649267.1|	-	1e-05	25.6	0.0	9.7e-05	22.4	0.0	2.7	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_22	PF13401.6	gi|296241780|ref|YP_003649267.1|	-	4.4e-05	23.8	0.0	0.00014	22.2	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|296241780|ref|YP_003649267.1|	-	6.1e-05	22.4	0.0	0.00012	21.5	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_30	PF13604.6	gi|296241780|ref|YP_003649267.1|	-	0.00033	20.4	0.0	0.0009	19.0	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
cobW	PF02492.19	gi|296241780|ref|YP_003649267.1|	-	0.00079	19.1	0.4	0.0086	15.7	0.4	2.2	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_33	PF13671.6	gi|296241780|ref|YP_003649267.1|	-	0.0012	19.0	0.0	0.0025	18.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|296241780|ref|YP_003649267.1|	-	0.0033	17.5	0.1	0.015	15.4	0.1	2.1	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_24	PF13479.6	gi|296241780|ref|YP_003649267.1|	-	0.0033	17.2	0.0	0.0077	16.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|296241780|ref|YP_003649267.1|	-	0.0038	16.3	0.1	0.029	13.4	0.1	2.1	1	1	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_17	PF13207.6	gi|296241780|ref|YP_003649267.1|	-	0.0043	17.5	1.3	0.013	15.9	0.1	2.4	2	1	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|296241780|ref|YP_003649267.1|	-	0.0049	16.4	0.0	0.012	15.1	0.0	1.7	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
AAA_31	PF13614.6	gi|296241780|ref|YP_003649267.1|	-	0.0072	16.3	0.2	0.022	14.7	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.14	gi|296241780|ref|YP_003649267.1|	-	0.009	15.9	0.2	0.022	14.7	0.0	1.7	2	0	0	2	2	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRPRB	PF09439.10	gi|296241780|ref|YP_003649267.1|	-	0.012	15.1	2.1	1.3	8.4	0.0	2.7	3	0	0	3	3	2	0	Signal	recognition	particle	receptor	beta	subunit
APS_kinase	PF01583.20	gi|296241780|ref|YP_003649267.1|	-	0.016	15.1	0.0	0.041	13.8	0.0	1.7	1	0	0	1	1	1	0	Adenylylsulphate	kinase
PduV-EutP	PF10662.9	gi|296241780|ref|YP_003649267.1|	-	0.018	14.8	0.2	6.5	6.5	0.1	2.3	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
6PF2K	PF01591.18	gi|296241780|ref|YP_003649267.1|	-	0.041	13.2	0.1	0.1	11.9	0.0	1.6	2	0	0	2	2	2	0	6-phosphofructo-2-kinase
PFOR_II	PF17147.4	gi|296241780|ref|YP_003649267.1|	-	0.043	14.1	0.0	0.29	11.5	0.0	2.3	1	1	0	2	2	2	0	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
AAA_18	PF13238.6	gi|296241780|ref|YP_003649267.1|	-	0.049	14.2	0.1	0.14	12.7	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|296241780|ref|YP_003649267.1|	-	0.051	13.6	0.6	0.23	11.4	0.1	2.3	1	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_28	PF13521.6	gi|296241780|ref|YP_003649267.1|	-	0.057	13.7	0.1	0.18	12.0	0.0	2.0	3	0	0	3	3	1	0	AAA	domain
AAA_16	PF13191.6	gi|296241780|ref|YP_003649267.1|	-	0.1	13.0	0.0	0.23	11.8	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|296241780|ref|YP_003649267.1|	-	0.13	12.7	0.0	0.3	11.6	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.6	gi|296241780|ref|YP_003649267.1|	-	0.2	11.2	1.3	1.2	8.6	0.7	2.6	2	1	0	2	2	2	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|296241780|ref|YP_003649267.1|	-	0.9	8.7	6.1	5.9	6.0	0.0	3.0	3	1	1	4	4	4	0	Anion-transporting	ATPase
Ribosomal_L16	PF00252.18	gi|296241781|ref|YP_003649268.1|	-	1.4e-33	115.7	0.0	1.5e-33	115.6	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
Diphthamide_syn	PF01866.17	gi|296241782|ref|YP_003649269.1|	-	1.3e-59	202.1	0.0	1.6e-59	201.8	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
MTS	PF05175.14	gi|296241783|ref|YP_003649270.1|	-	2.1e-07	30.6	0.0	3e-07	30.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|296241783|ref|YP_003649270.1|	-	1.6e-05	24.7	0.0	2e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296241783|ref|YP_003649270.1|	-	0.00017	22.2	0.0	0.00042	21.0	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|296241783|ref|YP_003649270.1|	-	0.00028	20.4	0.0	0.00037	20.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
UPF0020	PF01170.18	gi|296241783|ref|YP_003649270.1|	-	0.022	14.4	0.0	0.032	13.9	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
MetW	PF07021.12	gi|296241783|ref|YP_003649270.1|	-	0.085	12.4	0.1	0.21	11.2	0.1	1.6	2	0	0	2	2	2	0	Methionine	biosynthesis	protein	MetW
Methyltransf_11	PF08241.12	gi|296241783|ref|YP_003649270.1|	-	0.12	13.0	0.1	0.29	11.8	0.1	1.7	2	1	0	2	2	2	0	Methyltransferase	domain
ECR1_N	PF14382.6	gi|296241784|ref|YP_003649271.1|	-	4.2e-07	29.7	0.5	1e-06	28.4	0.5	1.7	1	0	0	1	1	1	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
RNA_POL_M_15KD	PF02150.16	gi|296241784|ref|YP_003649271.1|	-	0.00089	19.1	1.3	0.0015	18.4	1.3	1.3	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
PCB_OB	PF17092.5	gi|296241784|ref|YP_003649271.1|	-	0.0024	18.6	0.1	0.0039	17.9	0.1	1.4	1	1	0	1	1	1	1	Penicillin-binding	protein	OB-like	domain
HypA	PF01155.19	gi|296241784|ref|YP_003649271.1|	-	0.0099	15.9	0.0	0.021	14.9	0.0	1.6	1	1	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
EXOSC1	PF10447.9	gi|296241784|ref|YP_003649271.1|	-	0.021	15.5	0.5	0.53	10.9	0.1	2.4	1	1	2	3	3	3	0	Exosome	component	EXOSC1/CSL4
DUF2318	PF10080.9	gi|296241784|ref|YP_003649271.1|	-	0.032	14.4	0.1	0.053	13.6	0.1	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
S1	PF00575.23	gi|296241784|ref|YP_003649271.1|	-	0.037	14.4	0.1	0.12	12.7	0.1	1.9	1	1	0	1	1	1	0	S1	RNA	binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|296241784|ref|YP_003649271.1|	-	0.045	13.7	0.8	0.099	12.6	0.8	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
NOB1_Zn_bind	PF08772.11	gi|296241784|ref|YP_003649271.1|	-	0.15	12.2	0.2	0.29	11.3	0.2	1.4	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF2067	PF09840.9	gi|296241785|ref|YP_003649272.1|	-	6.3e-56	188.9	0.1	8.2e-56	188.5	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
Phage_ABA_S	PF18066.1	gi|296241785|ref|YP_003649272.1|	-	0.03	15.0	0.0	0.06	14.0	0.0	1.6	1	0	0	1	1	1	0	Phage	ABA	sandwich	domain
RNA_pol_L_2	PF13656.6	gi|296241786|ref|YP_003649273.1|	-	1.5e-19	69.5	0.0	1.9e-19	69.2	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|296241786|ref|YP_003649273.1|	-	0.027	13.9	0.0	0.046	13.2	0.0	1.5	1	1	0	1	1	1	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Kindlin_2_N	PF18124.1	gi|296241786|ref|YP_003649273.1|	-	0.037	14.2	0.1	0.84	9.9	0.0	2.0	1	1	0	2	2	2	0	Kindlin-2	N-terminal	domain
NDUF_B7	PF05676.13	gi|296241787|ref|YP_003649274.1|	-	0.045	13.5	0.1	0.51	10.1	0.1	2.0	2	0	0	2	2	2	0	NADH-ubiquinone	oxidoreductase	B18	subunit	(NDUFB7)
TFIIS_C	PF01096.18	gi|296241788|ref|YP_003649275.1|	-	6e-24	83.6	12.7	6.8e-23	80.2	3.3	3.1	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|296241788|ref|YP_003649275.1|	-	2.7e-07	30.4	8.9	9.4e-06	25.4	0.8	2.9	2	1	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.7	gi|296241788|ref|YP_003649275.1|	-	3.7e-07	30.0	9.6	0.0002	21.2	1.9	2.5	2	1	1	3	3	3	2	Transposase	zinc-ribbon	domain
DZR	PF12773.7	gi|296241788|ref|YP_003649275.1|	-	6.2e-06	26.1	8.6	0.00073	19.5	0.5	2.8	2	1	0	2	2	2	2	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|296241788|ref|YP_003649275.1|	-	3.4e-05	23.1	12.7	0.22	11.0	0.6	4.2	4	0	0	4	4	4	2	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|296241788|ref|YP_003649275.1|	-	0.00018	21.4	9.8	0.042	13.8	0.9	2.6	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.6	gi|296241788|ref|YP_003649275.1|	-	0.0003	20.4	16.1	0.49	10.2	0.1	4.2	4	0	0	4	4	4	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|296241788|ref|YP_003649275.1|	-	0.00034	20.1	15.1	0.0017	17.9	1.8	3.3	2	1	1	3	3	3	1	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.6	gi|296241788|ref|YP_003649275.1|	-	0.00071	19.4	12.3	0.12	12.4	0.1	4.2	4	0	0	4	4	4	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|296241788|ref|YP_003649275.1|	-	0.0012	19.0	11.8	1.9	8.6	1.7	3.8	3	1	0	3	3	3	2	Zinc	ribbon	domain
DUF2387	PF09526.10	gi|296241788|ref|YP_003649275.1|	-	0.0022	18.1	8.9	0.098	12.8	1.7	2.4	2	1	0	2	2	2	2	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_10	PF10058.9	gi|296241788|ref|YP_003649275.1|	-	0.0024	17.6	9.4	0.014	15.1	0.8	2.8	2	2	0	2	2	2	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Lar_restr_allev	PF14354.6	gi|296241788|ref|YP_003649275.1|	-	0.0024	18.2	7.3	0.047	14.1	0.2	2.4	2	1	0	2	2	2	1	Restriction	alleviation	protein	Lar
zf-NADH-PPase	PF09297.11	gi|296241788|ref|YP_003649275.1|	-	0.008	15.8	1.9	0.008	15.8	1.9	3.4	3	1	0	3	3	3	1	NADH	pyrophosphatase	zinc	ribbon	domain
Baculo_LEF5_C	PF11792.8	gi|296241788|ref|YP_003649275.1|	-	0.011	15.4	10.4	0.037	13.7	0.2	4.0	3	1	1	4	4	4	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
TackOD1	PF18551.1	gi|296241788|ref|YP_003649275.1|	-	0.017	14.8	5.8	0.68	9.6	0.4	2.6	1	1	1	2	2	2	0	Thaumarchaeal	output	domain	1
zf-IS66	PF13005.7	gi|296241788|ref|YP_003649275.1|	-	0.018	15.4	11.2	0.13	12.7	0.2	4.0	3	1	1	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
IBR	PF01485.21	gi|296241788|ref|YP_003649275.1|	-	0.023	14.9	12.1	0.057	13.7	0.8	3.1	2	1	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
FdhE	PF04216.12	gi|296241788|ref|YP_003649275.1|	-	0.041	13.8	0.4	0.041	13.8	0.4	1.9	2	0	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
Ribosomal_S27e	PF01667.17	gi|296241788|ref|YP_003649275.1|	-	0.078	12.7	8.5	3.8	7.3	0.4	3.1	2	1	0	2	2	2	0	Ribosomal	protein	S27
DNA_RNApol_7kD	PF03604.13	gi|296241788|ref|YP_003649275.1|	-	0.11	12.2	10.0	1.8	8.3	1.1	3.5	3	1	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_9	PF14369.6	gi|296241788|ref|YP_003649275.1|	-	0.11	12.7	7.2	4.8	7.5	0.1	4.0	4	0	0	4	4	4	0	zinc-ribbon
eIF-5_eIF-2B	PF01873.17	gi|296241788|ref|YP_003649275.1|	-	0.16	11.9	5.3	0.44	10.4	0.4	2.4	2	1	0	2	2	2	0	Domain	found	in	IF2B/IF5
DUF555	PF04475.12	gi|296241788|ref|YP_003649275.1|	-	0.17	12.2	0.1	6.4	7.2	0.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF555)
Nudix_N_2	PF14803.6	gi|296241788|ref|YP_003649275.1|	-	0.23	11.4	15.2	0.35	10.8	3.9	3.7	2	2	0	2	2	2	0	Nudix	N-terminal
YhfH	PF14149.6	gi|296241788|ref|YP_003649275.1|	-	0.24	11.4	10.5	19	5.3	0.1	4.2	3	1	1	4	4	4	0	YhfH-like	protein
RPA_interact_C	PF14768.6	gi|296241788|ref|YP_003649275.1|	-	0.28	11.8	5.2	0.19	12.3	2.1	2.2	1	1	1	2	2	2	0	Replication	protein	A	interacting	C-terminal
HypA	PF01155.19	gi|296241788|ref|YP_003649275.1|	-	0.3	11.1	8.2	1.4	9.0	3.9	2.9	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DpnI	PF06044.12	gi|296241788|ref|YP_003649275.1|	-	0.32	10.6	3.8	4.9	6.7	0.5	2.1	1	1	1	2	2	2	0	Dam-replacing	family
Zn_ribbon_SprT	PF17283.2	gi|296241788|ref|YP_003649275.1|	-	0.33	10.9	9.4	17	5.4	0.1	4.1	4	0	0	4	4	4	0	SprT-like	zinc	ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|296241788|ref|YP_003649275.1|	-	0.38	10.5	14.1	7.5	6.4	0.1	4.1	4	0	0	4	4	4	0	A2L	zinc	ribbon	domain
UPF0547	PF10571.9	gi|296241788|ref|YP_003649275.1|	-	0.52	10.4	14.3	13	6.0	0.8	4.2	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_5	PF13719.6	gi|296241788|ref|YP_003649275.1|	-	0.57	10.0	11.8	5.9	6.7	1.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|296241788|ref|YP_003649275.1|	-	0.6	10.2	10.5	1.8	8.6	0.5	3.4	2	2	1	3	3	3	0	Transposase	zinc-binding	domain
Auto_anti-p27	PF06677.12	gi|296241788|ref|YP_003649275.1|	-	0.63	10.2	10.8	1.2	9.4	2.8	3.1	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-C4_Topoisom	PF01396.19	gi|296241788|ref|YP_003649275.1|	-	1.2	9.0	15.7	1.6	8.5	3.3	3.3	3	1	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc-ribbons_6	PF07191.12	gi|296241788|ref|YP_003649275.1|	-	1.4	8.9	8.6	52	3.9	4.6	2.9	1	1	1	2	2	2	0	zinc-ribbons
zinc_ribbon_13	PF09855.9	gi|296241788|ref|YP_003649275.1|	-	2	8.6	14.3	3	8.1	0.1	4.0	3	1	2	5	5	5	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf_UBZ	PF18439.1	gi|296241788|ref|YP_003649275.1|	-	2.2	7.9	11.1	13	5.5	0.3	4.2	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zf-TFIIB	PF13453.6	gi|296241788|ref|YP_003649275.1|	-	2.5	7.5	12.5	0.92	8.9	1.1	3.3	2	2	1	3	3	3	0	Transcription	factor	zinc-finger
DUF35_N	PF12172.8	gi|296241788|ref|YP_003649275.1|	-	3.4	7.6	11.2	30	4.6	0.3	3.9	4	0	0	4	4	4	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_15	PF17032.5	gi|296241788|ref|YP_003649275.1|	-	3.6	8.4	11.2	6.9	7.5	1.6	3.2	2	1	1	3	3	3	0	zinc-ribbon	family
DUF2752	PF10825.8	gi|296241788|ref|YP_003649275.1|	-	3.9	7.6	5.5	23	5.1	0.0	3.5	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2752)
GFA	PF04828.14	gi|296241788|ref|YP_003649275.1|	-	4.1	7.8	9.9	6.1	7.3	1.3	3.3	1	1	3	4	4	4	0	Glutathione-dependent	formaldehyde-activating	enzyme
Gmx_para_CXXCG	PF09535.10	gi|296241788|ref|YP_003649275.1|	-	4.6	6.4	5.7	3.1	7.0	0.1	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(Gmx_para_CXXCG)
Ogr_Delta	PF04606.12	gi|296241788|ref|YP_003649275.1|	-	5.8	7.0	13.8	19	5.3	0.7	4.0	2	2	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf_C2H2_10	PF18414.1	gi|296241788|ref|YP_003649275.1|	-	6.2	6.5	14.1	5.1	6.7	0.3	4.1	4	0	0	4	4	4	0	C2H2	type	zinc-finger
PhnA_Zn_Ribbon	PF08274.12	gi|296241788|ref|YP_003649275.1|	-	6.2	6.9	9.9	21	5.2	1.8	3.6	3	1	0	3	3	3	0	PhnA	Zinc-Ribbon
zf-HIT	PF04438.16	gi|296241788|ref|YP_003649275.1|	-	7.2	6.6	14.8	6.8	6.7	0.5	4.0	4	0	0	4	4	4	0	HIT	zinc	finger
zf-ISL3	PF14690.6	gi|296241788|ref|YP_003649275.1|	-	7.9	7.2	12.4	6.2	7.6	0.1	3.6	3	1	0	3	3	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
YdjO	PF14169.6	gi|296241788|ref|YP_003649275.1|	-	8.8	6.1	10.8	1.4	8.7	0.4	3.4	2	2	2	4	4	4	0	Cold-inducible	protein	YdjO
PCNA_C	PF02747.15	gi|296241789|ref|YP_003649276.1|	-	6.9e-13	48.9	0.1	1.1e-12	48.3	0.1	1.3	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
PCNA_N	PF00705.18	gi|296241789|ref|YP_003649276.1|	-	2.4e-11	43.4	0.0	1.2e-10	41.1	0.0	1.9	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
Rad1	PF02144.16	gi|296241789|ref|YP_003649276.1|	-	6.4e-06	25.4	0.1	1.8e-05	23.9	0.0	1.6	2	0	0	2	2	2	1	Repair	protein	Rad1/Rec1/Rad17
Chalcone_2	PF16035.5	gi|296241789|ref|YP_003649276.1|	-	0.02	14.7	0.0	0.033	14.0	0.0	1.2	1	0	0	1	1	1	0	Chalcone	isomerase	like
Rad9	PF04139.13	gi|296241789|ref|YP_003649276.1|	-	0.075	12.5	0.0	0.54	9.7	0.0	2.0	1	1	0	1	1	1	0	Rad9
DNA_primase_S	PF01896.19	gi|296241790|ref|YP_003649277.1|	-	5.8e-15	55.8	3.2	1.9e-13	50.9	0.1	2.2	2	0	0	2	2	2	2	DNA	primase	small	subunit
DUF1129	PF06570.11	gi|296241792|ref|YP_003649279.1|	-	0.00033	20.2	3.3	0.00036	20.1	3.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1129)
DUF2207	PF09972.9	gi|296241792|ref|YP_003649279.1|	-	0.085	11.6	3.0	0.086	11.6	3.0	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
EIF_2_alpha	PF07541.12	gi|296241794|ref|YP_003649281.1|	-	8e-20	71.1	0.1	1.8e-19	69.9	0.0	1.6	2	0	0	2	2	2	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|296241794|ref|YP_003649281.1|	-	9.4e-14	51.5	0.4	9.4e-14	51.5	0.4	1.9	2	0	0	2	2	2	1	S1	RNA	binding	domain
Nop10p	PF04135.12	gi|296241795|ref|YP_003649282.1|	-	3.4e-24	84.6	1.3	4.3e-24	84.3	1.3	1.1	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
DNA_ligase_ZBD	PF03119.16	gi|296241795|ref|YP_003649282.1|	-	0.00066	19.6	3.7	0.0056	16.7	0.3	2.2	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-FPG_IleRS	PF06827.14	gi|296241795|ref|YP_003649282.1|	-	0.00075	19.3	3.2	0.064	13.1	0.8	2.3	2	0	0	2	2	2	1	Zinc	finger	found	in	FPG	and	IleRS
zf-C4_Topoisom	PF01396.19	gi|296241795|ref|YP_003649282.1|	-	0.0016	18.2	1.4	0.3	10.9	0.2	2.2	2	0	0	2	2	2	1	Topoisomerase	DNA	binding	C4	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|296241795|ref|YP_003649282.1|	-	0.002	17.6	3.9	0.16	11.5	0.4	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-TFIIB	PF13453.6	gi|296241795|ref|YP_003649282.1|	-	0.0074	15.6	1.6	0.84	9.0	0.2	2.2	2	0	0	2	2	2	1	Transcription	factor	zinc-finger
zf-tcix	PF14952.6	gi|296241795|ref|YP_003649282.1|	-	0.0093	15.6	3.1	0.17	11.6	0.2	2.1	2	0	0	2	2	2	1	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-ribbon_3	PF13248.6	gi|296241795|ref|YP_003649282.1|	-	0.012	14.9	5.5	0.22	11.0	5.6	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|296241795|ref|YP_003649282.1|	-	0.017	14.8	4.8	1	9.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|296241795|ref|YP_003649282.1|	-	0.018	14.7	1.0	4.3	7.1	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
CpXC	PF14353.6	gi|296241795|ref|YP_003649282.1|	-	0.019	15.0	1.5	0.14	12.2	0.0	2.0	1	1	1	2	2	2	0	CpXC	protein
RecR	PF02132.15	gi|296241795|ref|YP_003649282.1|	-	0.035	13.7	0.3	0.062	12.9	0.3	1.3	1	0	0	1	1	1	0	RecR	protein
DZR	PF12773.7	gi|296241795|ref|YP_003649282.1|	-	0.036	14.1	0.7	0.066	13.2	0.7	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
NRDD	PF13597.6	gi|296241795|ref|YP_003649282.1|	-	0.037	12.8	0.1	0.037	12.8	0.1	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-ACC	PF17848.1	gi|296241795|ref|YP_003649282.1|	-	0.038	14.1	1.6	4.1	7.6	0.1	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Desulfoferrod_N	PF06397.12	gi|296241795|ref|YP_003649282.1|	-	0.047	13.3	1.8	0.11	12.2	0.0	2.0	1	1	1	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
PhnA_Zn_Ribbon	PF08274.12	gi|296241795|ref|YP_003649282.1|	-	0.047	13.6	0.9	0.86	9.6	0.0	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
UPF0547	PF10571.9	gi|296241795|ref|YP_003649282.1|	-	0.079	13.1	2.5	4.5	7.5	0.4	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-C5HC2	PF02928.16	gi|296241795|ref|YP_003649282.1|	-	0.11	12.9	1.0	0.46	10.9	1.0	1.9	1	1	0	1	1	1	0	C5HC2	zinc	finger
HypA	PF01155.19	gi|296241795|ref|YP_003649282.1|	-	0.12	12.4	0.3	0.17	11.9	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|296241795|ref|YP_003649282.1|	-	0.13	12.4	4.1	6.6	6.9	4.3	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
PolC_DP2	PF03833.13	gi|296241795|ref|YP_003649282.1|	-	0.13	10.1	0.0	0.13	10.1	0.0	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
Ribosomal_L32p	PF01783.23	gi|296241795|ref|YP_003649282.1|	-	0.16	12.3	2.2	0.46	10.8	1.3	1.9	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
Prim_Zn_Ribbon	PF08273.12	gi|296241795|ref|YP_003649282.1|	-	0.19	12.0	3.1	2.1	8.7	0.2	2.3	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-ISL3	PF14690.6	gi|296241795|ref|YP_003649282.1|	-	0.24	12.1	5.8	3.7	8.3	0.3	2.3	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Rad50_zn_hook	PF04423.14	gi|296241795|ref|YP_003649282.1|	-	0.36	10.7	6.0	0.37	10.7	0.2	2.4	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
zf_UBZ	PF18439.1	gi|296241795|ref|YP_003649282.1|	-	0.4	10.3	2.7	6.4	6.5	0.3	2.2	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2_4	PF13894.6	gi|296241795|ref|YP_003649282.1|	-	0.4	11.6	2.3	13	6.9	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
ADK_lid	PF05191.14	gi|296241795|ref|YP_003649282.1|	-	0.42	10.6	4.4	12	6.0	4.4	2.2	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
DUF1610	PF07754.11	gi|296241795|ref|YP_003649282.1|	-	0.45	10.5	5.2	2.9	7.9	0.2	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
Zn_Tnp_IS1595	PF12760.7	gi|296241795|ref|YP_003649282.1|	-	0.53	10.3	6.9	2.3	8.2	0.3	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|296241795|ref|YP_003649282.1|	-	0.72	9.8	4.2	6.4	6.7	0.2	2.2	1	1	1	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Mu-like_Com	PF10122.9	gi|296241795|ref|YP_003649282.1|	-	0.98	8.9	7.8	1.1	8.8	1.4	2.2	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
Lar_restr_allev	PF14354.6	gi|296241795|ref|YP_003649282.1|	-	1.2	9.5	5.1	1.6	9.1	0.2	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
DUF3797	PF12677.7	gi|296241795|ref|YP_003649282.1|	-	3.5	7.6	6.9	16	5.5	0.3	3.1	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3797)
DUF35_N	PF12172.8	gi|296241795|ref|YP_003649282.1|	-	4	7.4	9.1	7.8	6.5	6.3	2.3	1	1	1	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
EamA	PF00892.20	gi|296241796|ref|YP_003649283.1|	-	4.4e-37	127.3	32.7	1.4e-20	73.9	14.7	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|296241796|ref|YP_003649283.1|	-	0.17	11.2	8.8	0.55	9.5	1.3	2.2	2	0	0	2	2	2	0	Triose-phosphate	Transporter	family
Oxidored_q6	PF01058.22	gi|296241798|ref|YP_003649285.1|	-	1.7e-21	76.4	0.1	2.1e-21	76.1	0.1	1.1	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Fer4	PF00037.27	gi|296241799|ref|YP_003649286.1|	-	2.2e-15	55.7	15.5	1.1e-09	37.7	5.2	3.3	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|296241799|ref|YP_003649286.1|	-	6.2e-13	49.1	27.2	2.2e-11	44.2	9.6	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296241799|ref|YP_003649286.1|	-	1.5e-12	47.4	8.5	1.5e-12	47.4	8.5	2.2	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|296241799|ref|YP_003649286.1|	-	2.8e-10	40.2	7.3	2.8e-10	40.2	7.3	2.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|296241799|ref|YP_003649286.1|	-	8.6e-10	38.6	10.3	8.6e-10	38.6	10.3	2.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|296241799|ref|YP_003649286.1|	-	3.1e-09	36.5	24.8	1.5e-08	34.4	3.6	3.8	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|296241799|ref|YP_003649286.1|	-	9.2e-09	36.1	14.3	0.00041	21.2	5.1	2.8	2	1	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|296241799|ref|YP_003649286.1|	-	1.6e-07	31.7	10.7	0.0014	19.0	0.6	2.5	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296241799|ref|YP_003649286.1|	-	4.9e-07	29.5	2.6	4.9e-07	29.5	2.6	3.7	4	0	0	4	4	4	1	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|296241799|ref|YP_003649286.1|	-	2.5e-05	24.4	1.4	2.5e-05	24.4	1.4	3.7	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|296241799|ref|YP_003649286.1|	-	0.00029	21.5	19.9	0.0015	19.3	7.9	3.3	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|296241799|ref|YP_003649286.1|	-	0.00035	21.3	0.6	0.00035	21.3	0.6	2.6	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|296241799|ref|YP_003649286.1|	-	0.0038	17.7	4.0	0.0038	17.7	4.0	3.0	4	0	0	4	4	3	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|296241799|ref|YP_003649286.1|	-	0.0041	17.6	17.5	0.06	13.9	1.9	3.3	1	1	3	4	4	4	3	4Fe-4S	dicluster	domain
DnaJ_CXXCXGXG	PF00684.19	gi|296241799|ref|YP_003649286.1|	-	0.0074	16.6	0.2	0.0074	16.6	0.2	2.1	2	0	0	2	2	2	1	DnaJ	central	domain
Fer4_22	PF17179.4	gi|296241799|ref|YP_003649286.1|	-	0.02	15.8	0.1	0.02	15.8	0.1	2.8	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|296241799|ref|YP_003649286.1|	-	0.08	13.1	15.8	0.17	12.1	1.2	2.9	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
NapB	PF03892.14	gi|296241799|ref|YP_003649286.1|	-	0.12	12.4	0.1	0.12	12.4	0.1	2.2	1	1	1	2	2	2	0	Nitrate	reductase	cytochrome	c-type	subunit	(NapB)
HypA	PF01155.19	gi|296241799|ref|YP_003649286.1|	-	4.3	7.4	8.1	0.16	12.0	2.1	1.7	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Complex1_49kDa	PF00346.19	gi|296241800|ref|YP_003649287.1|	-	2.9e-64	216.8	0.0	1.1e-47	162.4	0.0	2.2	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|296241800|ref|YP_003649287.1|	-	3.9e-20	72.7	0.0	2e-18	67.2	0.0	2.5	2	0	0	2	2	2	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|296241800|ref|YP_003649287.1|	-	2.4e-17	63.0	2.0	3.6e-13	49.3	0.1	3.0	2	2	0	2	2	2	2	Nickel-dependent	hydrogenase
NADHdh	PF00146.21	gi|296241801|ref|YP_003649288.1|	-	2.7e-30	105.7	22.4	3.5e-30	105.4	22.4	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
DUF2839	PF10999.8	gi|296241802|ref|YP_003649289.1|	-	0.16	12.4	1.5	0.22	11.9	1.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2839)
Proton_antipo_M	PF00361.20	gi|296241803|ref|YP_003649290.1|	-	8.3e-33	113.8	29.2	8.3e-33	113.8	29.2	2.0	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_M	PF00361.20	gi|296241804|ref|YP_003649291.1|	-	1.2e-33	116.6	23.0	1.2e-33	116.6	23.0	2.4	1	1	1	2	2	2	1	Proton-conducting	membrane	transporter
Fer4_11	PF13247.6	gi|296241805|ref|YP_003649292.1|	-	7.7e-21	74.1	9.7	7.7e-21	74.1	9.7	1.6	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|296241805|ref|YP_003649292.1|	-	3.3e-14	52.8	40.7	4.1e-06	26.8	5.7	3.0	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|296241805|ref|YP_003649292.1|	-	4e-13	48.6	37.5	5.1e-07	29.2	3.3	5.4	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|296241805|ref|YP_003649292.1|	-	1.3e-12	47.2	35.7	2.7e-06	27.2	2.8	4.8	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|296241805|ref|YP_003649292.1|	-	2.9e-11	43.8	50.0	1e-06	29.2	11.2	3.9	1	1	3	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|296241805|ref|YP_003649292.1|	-	9.8e-10	38.4	25.8	3.9e-06	26.9	11.7	3.5	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|296241805|ref|YP_003649292.1|	-	7.5e-09	35.9	37.4	0.0041	18.0	3.6	4.3	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|296241805|ref|YP_003649292.1|	-	9.2e-09	36.1	23.7	0.011	16.6	1.4	4.5	3	1	1	4	4	4	4	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|296241805|ref|YP_003649292.1|	-	2e-07	30.7	34.8	6.4e-05	22.8	2.0	4.5	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|296241805|ref|YP_003649292.1|	-	3.6e-07	30.2	35.1	0.00077	19.8	2.5	4.8	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|296241805|ref|YP_003649292.1|	-	7.6e-05	23.2	23.2	0.064	13.8	0.4	4.3	3	2	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|296241805|ref|YP_003649292.1|	-	0.00021	21.7	26.4	0.041	14.3	9.2	4.0	2	2	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296241805|ref|YP_003649292.1|	-	0.00036	20.6	32.0	0.0013	18.8	11.0	3.7	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|296241805|ref|YP_003649292.1|	-	0.017	15.8	17.0	0.51	11.1	0.9	3.7	4	1	0	4	4	3	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|296241805|ref|YP_003649292.1|	-	0.27	11.4	24.0	0.12	12.6	4.4	3.5	1	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|296241805|ref|YP_003649292.1|	-	0.69	10.8	21.6	0.38	11.6	0.7	4.1	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Pyr_redox_2	PF07992.14	gi|296241806|ref|YP_003649293.1|	-	5.7e-34	117.7	0.0	7.1e-34	117.4	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|296241806|ref|YP_003649293.1|	-	6.3e-10	38.8	2.5	2.2e-05	23.9	0.1	3.1	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|296241806|ref|YP_003649293.1|	-	6.7e-10	39.1	0.4	1.9e-08	34.4	0.0	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|296241806|ref|YP_003649293.1|	-	3.8e-09	37.0	2.9	0.0012	19.4	0.3	3.2	3	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|296241806|ref|YP_003649293.1|	-	4.4e-08	33.1	4.8	0.00013	21.7	0.2	3.5	3	1	0	4	4	4	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|296241806|ref|YP_003649293.1|	-	1.4e-07	31.0	0.7	0.011	14.8	0.1	3.1	3	0	0	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|296241806|ref|YP_003649293.1|	-	2.2e-07	30.6	0.2	0.0068	15.8	0.1	2.1	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|296241806|ref|YP_003649293.1|	-	7.5e-07	28.2	2.1	0.00023	20.0	0.1	3.1	3	1	0	3	3	3	2	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|296241806|ref|YP_003649293.1|	-	2.8e-06	26.8	0.0	0.033	13.5	0.0	2.5	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|296241806|ref|YP_003649293.1|	-	2.9e-05	23.5	0.1	9.8e-05	21.7	0.0	1.9	3	0	0	3	3	3	1	FAD	binding	domain
GIDA	PF01134.22	gi|296241806|ref|YP_003649293.1|	-	3.2e-05	23.2	2.7	0.13	11.4	0.0	3.1	4	0	0	4	4	4	2	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.6	gi|296241806|ref|YP_003649293.1|	-	0.00051	20.4	0.0	0.53	10.7	0.0	2.5	2	0	0	2	2	2	2	Putative	NAD(P)-binding
NAD_binding_9	PF13454.6	gi|296241806|ref|YP_003649293.1|	-	0.00092	19.2	0.3	0.096	12.7	0.1	3.0	3	0	0	3	3	3	1	FAD-NAD(P)-binding
Thi4	PF01946.17	gi|296241806|ref|YP_003649293.1|	-	0.0016	17.8	0.6	0.007	15.6	0.0	2.3	3	0	0	3	3	3	1	Thi4	family
Shikimate_DH	PF01488.20	gi|296241806|ref|YP_003649293.1|	-	0.0021	18.1	0.0	4.8	7.2	0.0	3.0	4	0	0	4	4	3	2	Shikimate	/	quinate	5-dehydrogenase
K_oxygenase	PF13434.6	gi|296241806|ref|YP_003649293.1|	-	0.0045	16.2	0.6	0.28	10.3	0.0	3.1	3	1	0	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
MCRA	PF06100.11	gi|296241806|ref|YP_003649293.1|	-	0.0099	14.7	0.7	0.1	11.3	0.2	2.2	2	0	0	2	2	2	1	MCRA	family
3HCDH_N	PF02737.18	gi|296241806|ref|YP_003649293.1|	-	0.029	14.3	0.1	0.2	11.5	0.0	2.0	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|296241806|ref|YP_003649293.1|	-	0.035	13.5	0.2	0.29	10.5	0.0	2.5	4	0	0	4	4	4	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF498	PF04430.14	gi|296241806|ref|YP_003649293.1|	-	0.046	13.8	0.1	7	6.8	0.0	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF498/DUF598)
Amino_oxidase	PF01593.24	gi|296241806|ref|YP_003649293.1|	-	0.062	12.6	0.0	0.66	9.2	0.0	2.3	3	0	0	3	3	3	0	Flavin	containing	amine	oxidoreductase
RsbU_N	PF08673.10	gi|296241806|ref|YP_003649293.1|	-	0.1	12.7	0.1	0.2	11.8	0.1	1.4	1	0	0	1	1	1	0	Phosphoserine	phosphatase	RsbU,	N-terminal	domain
FMO-like	PF00743.19	gi|296241806|ref|YP_003649293.1|	-	0.2	10.0	0.0	15	3.8	0.0	2.4	3	0	0	3	3	3	0	Flavin-binding	monooxygenase-like
SKI	PF01202.22	gi|296241806|ref|YP_003649293.1|	-	0.21	11.7	0.1	3	8.0	0.0	2.2	2	0	0	2	2	2	0	Shikimate	kinase
PTP_N	PF12453.8	gi|296241806|ref|YP_003649293.1|	-	0.76	9.5	4.2	0.71	9.6	0.9	2.2	2	0	0	2	2	2	0	Protein	tyrosine	phosphatase	N	terminal
Hydrolase_3	PF08282.12	gi|296241807|ref|YP_003649294.1|	-	1.4e-26	93.8	0.0	9.6e-19	68.1	0.1	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|296241807|ref|YP_003649294.1|	-	8.8e-09	35.3	0.0	3.1e-08	33.4	0.0	1.8	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
Trehalose_PPase	PF02358.16	gi|296241807|ref|YP_003649294.1|	-	0.0018	17.5	0.1	0.025	13.7	0.1	2.0	1	1	0	1	1	1	1	Trehalose-phosphatase
Hydrolase	PF00702.26	gi|296241807|ref|YP_003649294.1|	-	0.0022	18.3	2.1	0.81	9.9	0.2	2.7	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|296241807|ref|YP_003649294.1|	-	0.032	14.3	2.1	0.33	11.0	0.1	2.7	2	1	1	3	3	3	0	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|296241807|ref|YP_003649294.1|	-	0.44	10.9	2.1	6.2	7.2	0.0	2.8	1	1	2	3	3	3	0	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|296241808|ref|YP_003649295.1|	-	4.1e-37	128.0	0.0	4.8e-37	127.8	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|296241808|ref|YP_003649295.1|	-	1.2e-11	45.3	0.0	6e-09	36.5	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|296241808|ref|YP_003649295.1|	-	1.4e-08	35.3	0.0	1.9e-08	34.9	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|296241808|ref|YP_003649295.1|	-	9.8e-08	32.0	0.0	1.6e-07	31.3	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
Acid_PPase	PF12689.7	gi|296241808|ref|YP_003649295.1|	-	0.0016	18.3	0.1	0.18	11.6	0.0	2.1	2	0	0	2	2	2	2	Acid	Phosphatase
Put_Phosphatase	PF06888.12	gi|296241808|ref|YP_003649295.1|	-	0.053	12.9	0.0	0.5	9.7	0.0	2.0	2	0	0	2	2	2	0	Putative	Phosphatase
UbiA	PF01040.18	gi|296241810|ref|YP_003649297.1|	-	1.6e-30	106.2	12.8	2.1e-30	105.9	12.8	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
PAP2	PF01569.21	gi|296241810|ref|YP_003649297.1|	-	0.013	15.3	1.9	0.013	15.3	1.9	2.6	2	1	1	3	3	3	0	PAP2	superfamily
Syndecan	PF01034.20	gi|296241810|ref|YP_003649297.1|	-	0.32	10.9	8.1	2.2	8.3	0.4	3.0	3	0	0	3	3	3	0	Syndecan	domain
PAP2	PF01569.21	gi|296241811|ref|YP_003649298.1|	-	6.1e-16	58.4	5.1	6.1e-16	58.4	5.1	3.1	3	2	0	3	3	3	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|296241811|ref|YP_003649298.1|	-	5e-05	23.1	3.5	5e-05	23.1	3.5	2.2	2	1	0	2	2	2	1	PAP2	superfamily
DUF212	PF02681.14	gi|296241811|ref|YP_003649298.1|	-	0.017	15.3	0.2	0.27	11.4	0.0	2.5	1	1	0	2	2	2	0	Divergent	PAP2	family
bact-PGI_C	PF10432.9	gi|296241812|ref|YP_003649299.1|	-	2.1e-32	112.2	0.0	3.3e-32	111.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	phospho-glucose	isomerase	C-terminal	SIS	domain
SIS	PF01380.22	gi|296241812|ref|YP_003649299.1|	-	2.9e-07	30.4	0.0	1.6e-06	28.0	0.0	1.9	2	0	0	2	2	2	1	SIS	domain
TrmB	PF01978.19	gi|296241813|ref|YP_003649300.1|	-	0.0071	16.2	0.3	0.012	15.5	0.3	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|296241813|ref|YP_003649300.1|	-	0.082	12.7	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF2258	PF10015.9	gi|296241816|ref|YP_003649303.1|	-	3.6e-30	103.9	1.1	3.6e-30	103.9	1.1	1.7	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
DHHA1	PF02272.19	gi|296241817|ref|YP_003649304.1|	-	2.1e-13	50.9	0.1	4.6e-12	46.5	0.0	2.2	1	1	1	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|296241817|ref|YP_003649304.1|	-	0.0015	18.7	0.0	0.0032	17.7	0.0	1.5	1	0	0	1	1	1	1	DHH	family
Phage_integrase	PF00589.22	gi|296241818|ref|YP_003649305.1|	-	8.2e-34	116.9	0.0	1.7e-33	115.8	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|296241818|ref|YP_003649305.1|	-	2.1e-08	34.5	0.3	5.5e-06	26.8	0.0	2.8	2	1	1	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
zinc_ribbon_2	PF13240.6	gi|296241818|ref|YP_003649305.1|	-	4.7e-07	29.3	2.4	7.3e-07	28.7	2.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
Phage_int_SAM_1	PF02899.17	gi|296241818|ref|YP_003649305.1|	-	9.4e-07	29.0	0.1	1e-05	25.8	0.1	2.5	2	1	1	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
zf-ribbon_3	PF13248.6	gi|296241818|ref|YP_003649305.1|	-	4.5e-06	25.9	1.4	7.4e-06	25.2	1.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|296241818|ref|YP_003649305.1|	-	1.7e-05	24.8	1.6	2.7e-05	24.1	1.6	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|296241818|ref|YP_003649305.1|	-	0.0002	22.0	0.2	0.00035	21.2	0.2	1.4	1	0	0	1	1	1	1	zinc-ribbon	family
UPF0547	PF10571.9	gi|296241818|ref|YP_003649305.1|	-	0.0021	18.1	1.0	0.0037	17.3	1.0	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
Sgf11	PF08209.11	gi|296241818|ref|YP_003649305.1|	-	0.013	15.0	4.2	0.86	9.2	0.1	2.3	1	1	1	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Phage_int_SAM_3	PF14659.6	gi|296241818|ref|YP_003649305.1|	-	0.027	14.7	0.0	0.14	12.4	0.0	2.2	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
DUF2089	PF09862.9	gi|296241818|ref|YP_003649305.1|	-	0.048	13.7	0.1	0.47	10.5	0.0	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2089)
HypA	PF01155.19	gi|296241818|ref|YP_003649305.1|	-	0.062	13.3	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C2HC_2	PF13913.6	gi|296241818|ref|YP_003649305.1|	-	0.094	12.6	3.4	1.7	8.7	0.2	2.4	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-C3HC4_3	PF13920.6	gi|296241818|ref|YP_003649305.1|	-	0.11	12.4	0.4	0.16	11.8	0.4	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Phage_int_SAM_5	PF13102.6	gi|296241818|ref|YP_003649305.1|	-	0.12	12.7	0.1	5.6	7.4	0.0	3.2	4	0	0	4	4	3	0	Phage	integrase	SAM-like	domain
Phage_int_SAM_6	PF18644.1	gi|296241818|ref|YP_003649305.1|	-	0.13	12.3	0.1	0.37	10.8	0.0	1.8	2	0	0	2	2	2	0	Phage	integrase	SAM-like	domain
zf-RING_7	PF02591.15	gi|296241818|ref|YP_003649305.1|	-	0.14	12.4	1.8	4.8	7.4	0.2	2.5	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|296241818|ref|YP_003649305.1|	-	0.18	11.4	0.6	4.2	7.0	0.0	2.3	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Peptidase_M28	PF04389.17	gi|296241820|ref|YP_003649307.1|	-	8.2e-06	25.6	0.0	2.3e-05	24.2	0.0	1.7	1	1	0	1	1	1	1	Peptidase	family	M28
PA	PF02225.22	gi|296241820|ref|YP_003649307.1|	-	8.3e-05	22.5	0.0	0.00019	21.4	0.0	1.6	1	0	0	1	1	1	1	PA	domain
tRNA-synt_2b	PF00587.25	gi|296241821|ref|YP_003649308.1|	-	4.8e-29	101.6	0.0	1e-28	100.5	0.0	1.6	2	0	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|296241821|ref|YP_003649308.1|	-	9e-20	70.6	0.1	1.7e-19	69.8	0.1	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.11	gi|296241821|ref|YP_003649308.1|	-	0.0004	20.5	0.0	0.0015	18.7	0.0	1.9	2	0	0	2	2	2	1	Prolyl-tRNA	synthetase,	C-terminal
CAP_C	PF08603.11	gi|296241822|ref|YP_003649309.1|	-	0.0037	16.9	0.1	0.0039	16.8	0.1	1.1	1	0	0	1	1	1	1	Adenylate	cyclase	associated	(CAP)	C	terminal
Diphthami_syn_2	PF01902.17	gi|296241823|ref|YP_003649310.1|	-	8.7e-46	156.2	0.0	9.7e-46	156.0	0.0	1.0	1	0	0	1	1	1	1	Diphthamide	synthase
THB	PF18362.1	gi|296241823|ref|YP_003649310.1|	-	0.28	10.8	2.6	0.41	10.3	0.0	2.6	4	0	0	4	4	4	0	Tri-helix	bundle	domain
Lactamase_B	PF00753.27	gi|296241824|ref|YP_003649311.1|	-	9.7e-10	38.8	0.1	1.8e-09	37.9	0.1	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|296241824|ref|YP_003649311.1|	-	8.2e-07	28.7	0.0	1.4e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|296241824|ref|YP_003649311.1|	-	0.00046	19.7	0.0	0.00061	19.3	0.0	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|296241824|ref|YP_003649311.1|	-	0.003	17.5	0.0	0.0058	16.5	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
B12-binding	PF02310.19	gi|296241824|ref|YP_003649311.1|	-	0.091	12.8	0.1	0.22	11.6	0.1	1.6	1	0	0	1	1	1	0	B12	binding	domain
ATP-synt_ab	PF00006.25	gi|296241825|ref|YP_003649312.1|	-	1.7e-63	214.1	0.0	3.4e-63	213.1	0.0	1.5	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|296241825|ref|YP_003649312.1|	-	4e-07	30.5	0.5	1e-06	29.2	0.5	1.7	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|296241825|ref|YP_003649312.1|	-	0.0096	16.1	0.3	0.023	14.9	0.3	1.6	1	0	0	1	1	1	1	HAS	barrel	domain
ATP-synt_ab	PF00006.25	gi|296241826|ref|YP_003649313.1|	-	4.9e-84	281.3	0.0	6.4e-84	280.9	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|296241826|ref|YP_003649313.1|	-	1.4e-41	141.2	0.1	3.3e-41	139.9	0.1	1.7	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|296241826|ref|YP_003649313.1|	-	1.3e-14	54.4	5.8	3.9e-14	52.9	5.8	1.9	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|296241826|ref|YP_003649313.1|	-	1.1	9.4	8.1	1	9.6	0.3	3.6	3	1	1	4	4	4	0	HAS	barrel	domain
TcdB_N	PF12918.7	gi|296241827|ref|YP_003649314.1|	-	0.016	15.4	0.3	0.03	14.6	0.3	1.4	1	0	0	1	1	1	0	TcdB	toxin	N-terminal	helical	domain
SASA	PF03629.18	gi|296241827|ref|YP_003649314.1|	-	0.2	11.3	0.0	0.24	11.0	0.0	1.2	1	0	0	1	1	1	0	Carbohydrate	esterase,	sialic	acid-specific	acetylesterase
vATP-synt_E	PF01991.18	gi|296241829|ref|YP_003649316.1|	-	4.7e-15	55.5	17.2	1.7e-14	53.7	17.2	1.7	1	1	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
V-ATPase_G_2	PF16999.5	gi|296241829|ref|YP_003649316.1|	-	0.00059	20.2	19.2	0.0017	18.8	18.9	2.0	1	1	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
DUF87	PF01935.17	gi|296241829|ref|YP_003649316.1|	-	0.004	17.3	5.0	0.0054	16.9	5.0	1.2	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DivIVA	PF05103.13	gi|296241829|ref|YP_003649316.1|	-	0.0067	16.5	7.1	0.0067	16.5	7.1	2.4	1	1	1	2	2	2	1	DivIVA	protein
HrpE	PF06188.12	gi|296241829|ref|YP_003649316.1|	-	0.14	12.1	8.5	0.31	10.9	8.4	1.7	1	1	0	1	1	1	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
Sds3	PF08598.11	gi|296241829|ref|YP_003649316.1|	-	0.66	9.9	7.9	0.84	9.6	7.9	1.3	1	0	0	1	1	1	0	Sds3-like
Pantoate_ligase	PF02569.15	gi|296241829|ref|YP_003649316.1|	-	1.1	8.4	4.8	4.5	6.4	3.6	1.8	1	1	1	2	2	2	0	Pantoate-beta-alanine	ligase
ATP-synt_B	PF00430.18	gi|296241829|ref|YP_003649316.1|	-	5.8	7.0	18.9	17	5.5	17.0	2.1	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
ATP-synt_C	PF00137.21	gi|296241830|ref|YP_003649317.1|	-	5.4e-11	42.7	9.2	0.00014	22.1	0.1	2.3	2	1	0	2	2	2	2	ATP	synthase	subunit	C
V_ATPase_I	PF01496.19	gi|296241831|ref|YP_003649318.1|	-	2.1e-26	92.2	9.7	1.9e-15	55.9	0.0	3.8	4	0	0	4	4	4	3	V-type	ATPase	116kDa	subunit	family
Lebercilin	PF15619.6	gi|296241831|ref|YP_003649318.1|	-	0.22	11.1	2.8	0.79	9.3	0.0	2.5	3	0	0	3	3	3	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF1664	PF07889.12	gi|296241831|ref|YP_003649318.1|	-	0.34	11.0	1.6	1.4	8.9	0.4	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.9	gi|296241831|ref|YP_003649318.1|	-	1.4	9.2	6.1	2.9	8.3	0.4	3.0	2	1	1	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF4200	PF13863.6	gi|296241831|ref|YP_003649318.1|	-	3.4	8.1	5.0	1.9	8.9	0.2	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
V-ATPase_G	PF03179.15	gi|296241832|ref|YP_003649319.1|	-	7.9e-05	23.1	7.9	9.9e-05	22.8	7.9	1.1	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
Syntaxin-18_N	PF10496.9	gi|296241832|ref|YP_003649319.1|	-	0.0098	16.1	1.7	0.012	15.9	1.5	1.3	1	1	0	1	1	1	1	SNARE-complex	protein	Syntaxin-18	N-terminus
DivIVA	PF05103.13	gi|296241832|ref|YP_003649319.1|	-	0.023	14.8	10.7	0.49	10.5	3.6	2.1	1	1	1	2	2	2	0	DivIVA	protein
Fib_alpha	PF08702.10	gi|296241832|ref|YP_003649319.1|	-	0.029	14.6	4.2	0.034	14.3	4.2	1.1	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
HrpE	PF06188.12	gi|296241832|ref|YP_003649319.1|	-	0.034	14.0	2.0	0.11	12.4	2.0	1.7	1	1	1	2	2	2	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
REF	PF05755.12	gi|296241832|ref|YP_003649319.1|	-	0.036	13.9	1.3	0.13	12.0	1.3	1.7	1	1	0	1	1	1	0	Rubber	elongation	factor	protein	(REF)
Enkurin	PF13864.6	gi|296241832|ref|YP_003649319.1|	-	0.039	14.4	2.2	0.039	14.4	2.2	1.8	2	0	0	2	2	2	0	Calmodulin-binding
ERp29	PF07749.12	gi|296241832|ref|YP_003649319.1|	-	0.17	12.8	3.7	0.45	11.4	3.6	1.8	1	1	0	1	1	1	0	Endoplasmic	reticulum	protein	ERp29,	C-terminal	domain
ATP-synt_B	PF00430.18	gi|296241832|ref|YP_003649319.1|	-	0.43	10.7	11.5	2.2	8.4	4.1	2.1	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
V-ATPase_G_2	PF16999.5	gi|296241832|ref|YP_003649319.1|	-	0.59	10.6	12.1	1.4	9.4	8.4	2.0	1	1	1	2	2	2	0	Vacuolar	(H+)-ATPase	G	subunit
vATP-synt_E	PF01991.18	gi|296241832|ref|YP_003649319.1|	-	1.1	8.6	13.0	2.5	7.5	13.0	1.5	1	1	0	1	1	1	0	ATP	synthase	(E/31	kDa)	subunit
Peptidase_M41	PF01434.18	gi|296241832|ref|YP_003649319.1|	-	3	7.6	7.0	2.2	8.0	1.2	2.1	1	1	1	2	2	2	0	Peptidase	family	M41
Orthopox_B11R	PF07033.11	gi|296241832|ref|YP_003649319.1|	-	6.5	6.6	8.3	4.1	7.2	0.6	2.4	1	1	1	2	2	2	0	Orthopoxvirus	B11R	protein
DUF61	PF01886.16	gi|296241833|ref|YP_003649320.1|	-	2e-39	134.5	0.3	2.2e-39	134.4	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF61
ATP-synt_D	PF01813.17	gi|296241834|ref|YP_003649321.1|	-	1.9e-38	132.3	9.3	2.2e-38	132.1	9.3	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
CBS	PF00571.28	gi|296241835|ref|YP_003649322.1|	-	2.9e-36	123.7	5.5	5.1e-19	68.5	0.4	2.1	2	0	0	2	2	2	2	CBS	domain
PRC	PF05239.16	gi|296241835|ref|YP_003649322.1|	-	0.0019	18.2	0.8	0.13	12.4	0.0	2.3	2	0	0	2	2	2	1	PRC-barrel	domain
Glyco_hydro_38	PF18438.1	gi|296241835|ref|YP_003649322.1|	-	0.003	17.6	0.0	0.95	9.5	0.0	2.1	1	1	0	2	2	2	2	Glycosyl	hydrolases	family	38	C-terminal	domain	1
Robl_LC7	PF03259.17	gi|296241835|ref|YP_003649322.1|	-	0.032	14.0	0.1	5.6	6.8	0.0	2.4	2	0	0	2	2	2	0	Roadblock/LC7	domain
IF3_N	PF05198.16	gi|296241835|ref|YP_003649322.1|	-	0.042	14.1	0.6	6.3	7.2	0.0	2.7	2	1	1	3	3	3	0	Translation	initiation	factor	IF-3,	N-terminal	domain
DUF3659	PF12396.8	gi|296241835|ref|YP_003649322.1|	-	0.2	11.6	2.2	10	6.1	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3659)
NUDIX	PF00293.28	gi|296241837|ref|YP_003649324.1|	-	1.5e-17	63.9	0.0	1.7e-17	63.7	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
EppA_BapA	PF07268.11	gi|296241837|ref|YP_003649324.1|	-	0.035	14.1	0.0	0.062	13.3	0.0	1.4	1	0	0	1	1	1	0	Exported	protein	precursor	(EppA/BapA)
AP_endonuc_2	PF01261.24	gi|296241838|ref|YP_003649325.1|	-	3.1e-22	79.1	0.0	3.6e-22	78.8	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
DUF3510	PF12022.8	gi|296241838|ref|YP_003649325.1|	-	0.15	12.5	0.0	4.5	7.7	0.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3510)
CDP-OH_P_transf	PF01066.21	gi|296241839|ref|YP_003649326.1|	-	3.3e-14	53.4	1.9	3.3e-14	53.4	1.9	2.3	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
DUF87	PF01935.17	gi|296241840|ref|YP_003649327.1|	-	1.2e-11	45.2	0.1	1.2e-10	41.8	0.0	2.4	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|296241840|ref|YP_003649327.1|	-	1e-08	34.3	0.1	0.00022	20.0	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.18	gi|296241840|ref|YP_003649327.1|	-	7.1e-08	32.1	0.0	2.6e-07	30.3	0.0	1.8	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA	PF00004.29	gi|296241840|ref|YP_003649327.1|	-	3.4e-07	30.8	0.2	0.0092	16.4	0.1	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|296241840|ref|YP_003649327.1|	-	5.4e-07	30.0	0.0	0.00086	19.6	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_10	PF12846.7	gi|296241840|ref|YP_003649327.1|	-	1.3e-05	24.3	0.0	0.063	12.2	0.0	2.7	2	1	0	2	2	2	2	AAA-like	domain
DEAD	PF00270.29	gi|296241840|ref|YP_003649327.1|	-	3.1e-05	23.8	0.1	0.22	11.3	0.0	2.9	3	1	0	3	3	2	2	DEAD/DEAH	box	helicase
T2SSE	PF00437.20	gi|296241840|ref|YP_003649327.1|	-	4.8e-05	22.6	0.0	0.0024	17.0	0.0	2.3	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
ResIII	PF04851.15	gi|296241840|ref|YP_003649327.1|	-	0.00016	21.7	0.1	0.46	10.5	0.0	2.3	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
TrwB_AAD_bind	PF10412.9	gi|296241840|ref|YP_003649327.1|	-	0.0003	19.8	0.0	0.00072	18.6	0.0	1.6	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_7	PF12775.7	gi|296241840|ref|YP_003649327.1|	-	0.0016	18.0	0.0	0.0037	16.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|296241840|ref|YP_003649327.1|	-	0.0035	17.7	0.0	0.0074	16.7	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
Zot	PF05707.12	gi|296241840|ref|YP_003649327.1|	-	0.0063	16.2	0.3	0.015	14.9	0.0	1.7	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_16	PF13191.6	gi|296241840|ref|YP_003649327.1|	-	0.0063	16.9	0.0	0.27	11.6	0.0	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
SWI2_SNF2	PF18766.1	gi|296241840|ref|YP_003649327.1|	-	0.0066	16.1	0.0	1.2	8.7	0.0	2.3	2	0	0	2	2	2	1	SWI2/SNF2	ATPase
ATPase_2	PF01637.18	gi|296241840|ref|YP_003649327.1|	-	0.01	15.8	0.1	0.36	10.7	0.0	2.3	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
Adeno_IVa2	PF02456.15	gi|296241840|ref|YP_003649327.1|	-	0.013	14.3	0.1	0.074	11.8	0.0	1.9	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
DUF2075	PF09848.9	gi|296241840|ref|YP_003649327.1|	-	0.014	14.7	0.0	2.6	7.2	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_18	PF13238.6	gi|296241840|ref|YP_003649327.1|	-	0.016	15.8	0.0	0.11	13.0	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|296241840|ref|YP_003649327.1|	-	0.017	15.2	0.0	0.69	9.9	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Pox_A32	PF04665.12	gi|296241840|ref|YP_003649327.1|	-	0.023	14.2	0.1	0.057	12.9	0.1	1.6	1	0	0	1	1	1	0	Poxvirus	A32	protein
AAA_19	PF13245.6	gi|296241840|ref|YP_003649327.1|	-	0.036	14.4	0.0	0.099	13.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|296241840|ref|YP_003649327.1|	-	0.036	14.6	0.0	0.089	13.3	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
cobW	PF02492.19	gi|296241840|ref|YP_003649327.1|	-	0.037	13.6	0.0	0.073	12.7	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_32	PF13654.6	gi|296241840|ref|YP_003649327.1|	-	0.038	12.8	0.0	0.069	11.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
G-alpha	PF00503.20	gi|296241840|ref|YP_003649327.1|	-	0.044	12.9	0.0	0.088	12.0	0.0	1.4	1	0	0	1	1	1	0	G-protein	alpha	subunit
ATP_bind_1	PF03029.17	gi|296241840|ref|YP_003649327.1|	-	0.052	13.3	0.0	0.094	12.5	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_29	PF13555.6	gi|296241840|ref|YP_003649327.1|	-	0.058	13.1	0.1	0.12	12.1	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MobB	PF03205.14	gi|296241840|ref|YP_003649327.1|	-	0.063	13.2	0.2	0.15	12.0	0.2	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.6	gi|296241840|ref|YP_003649327.1|	-	0.075	13.2	0.0	0.18	12.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Septin	PF00735.18	gi|296241840|ref|YP_003649327.1|	-	0.08	12.2	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	Septin
NACHT	PF05729.12	gi|296241840|ref|YP_003649327.1|	-	0.088	12.7	0.0	0.19	11.7	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Zeta_toxin	PF06414.12	gi|296241840|ref|YP_003649327.1|	-	0.12	11.6	0.0	0.83	8.9	0.0	2.0	2	0	0	2	2	2	0	Zeta	toxin
Viral_helicase1	PF01443.18	gi|296241840|ref|YP_003649327.1|	-	0.13	12.0	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
TsaE	PF02367.17	gi|296241840|ref|YP_003649327.1|	-	0.13	12.2	0.0	0.28	11.2	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
PduV-EutP	PF10662.9	gi|296241840|ref|YP_003649327.1|	-	0.14	11.9	0.0	0.82	9.4	0.0	2.1	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
NB-ARC	PF00931.22	gi|296241840|ref|YP_003649327.1|	-	0.14	11.3	0.0	0.23	10.6	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
TniB	PF05621.11	gi|296241840|ref|YP_003649327.1|	-	0.15	11.4	0.0	0.51	9.7	0.0	1.7	2	0	0	2	2	2	0	Bacterial	TniB	protein
NTPase_1	PF03266.15	gi|296241840|ref|YP_003649327.1|	-	0.17	11.8	0.2	0.43	10.5	0.2	1.7	1	0	0	1	1	1	0	NTPase
SRP54	PF00448.22	gi|296241840|ref|YP_003649327.1|	-	0.18	11.4	0.0	0.3	10.7	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
NurA	PF09376.10	gi|296241841|ref|YP_003649328.1|	-	2.7e-06	27.2	1.9	0.0017	18.1	0.2	2.8	2	1	0	2	2	2	2	NurA	domain
DHH	PF01368.20	gi|296241842|ref|YP_003649329.1|	-	0.0081	16.4	0.1	0.023	15.0	0.1	1.6	1	1	0	1	1	1	1	DHH	family
DHHA1	PF02272.19	gi|296241842|ref|YP_003649329.1|	-	0.045	14.2	0.7	0.13	12.7	0.3	2.0	2	1	1	3	3	3	0	DHHA1	domain
Hist_deacetyl	PF00850.19	gi|296241843|ref|YP_003649330.1|	-	7.5e-55	186.6	0.0	9.8e-55	186.2	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
CYTH	PF01928.21	gi|296241844|ref|YP_003649331.1|	-	5.1e-17	62.4	0.7	6.2e-17	62.1	0.7	1.1	1	0	0	1	1	1	1	CYTH	domain
NUDIX	PF00293.28	gi|296241845|ref|YP_003649332.1|	-	2.5e-18	66.4	0.0	3e-18	66.1	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
PDDEXK_1	PF12705.7	gi|296241846|ref|YP_003649333.1|	-	1.4e-09	38.2	5.2	7.1e-06	26.1	3.7	2.9	1	1	1	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
PDDEXK_3	PF13366.6	gi|296241846|ref|YP_003649333.1|	-	2.2e-07	31.2	0.5	4e-07	30.4	0.5	1.4	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.17	gi|296241846|ref|YP_003649333.1|	-	1.7e-05	25.0	1.8	3e-05	24.2	1.8	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
Dna2	PF08696.11	gi|296241846|ref|YP_003649333.1|	-	0.026	14.3	0.0	0.18	11.6	0.0	2.0	1	1	1	2	2	2	0	DNA	replication	factor	Dna2
Myco_19_kDa	PF05481.12	gi|296241846|ref|YP_003649333.1|	-	0.076	13.3	0.0	0.11	12.8	0.0	1.2	1	0	0	1	1	1	0	Mycobacterium	19	kDa	lipoprotein	antigen
Lectin_N	PF03954.14	gi|296241847|ref|YP_003649334.1|	-	0.016	15.0	0.3	0.029	14.1	0.3	1.5	1	0	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
Ninjurin	PF04923.12	gi|296241847|ref|YP_003649334.1|	-	2.7	8.0	11.8	0.32	10.9	5.0	2.1	2	0	0	2	2	2	0	Ninjurin
SAM_adeno_trans	PF01887.16	gi|296241848|ref|YP_003649335.1|	-	5.6e-79	264.9	0.0	6.3e-79	264.7	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
DUF2139	PF09910.9	gi|296241850|ref|YP_003649337.1|	-	1.9e-162	540.2	0.1	2.3e-162	539.9	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2139)
AFOR_C	PF01314.18	gi|296241851|ref|YP_003649338.1|	-	7.8e-114	380.6	0.1	9.3e-114	380.4	0.1	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|296241851|ref|YP_003649338.1|	-	9.3e-76	254.1	0.1	1.3e-75	253.6	0.1	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
CTP-dep_RFKase	PF01982.16	gi|296241852|ref|YP_003649339.1|	-	4.5e-30	104.2	0.0	5.3e-30	104.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
Proton_antipo_M	PF00361.20	gi|296241853|ref|YP_003649340.1|	-	4.1e-54	183.8	23.9	4.1e-54	183.8	23.9	1.7	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|296241853|ref|YP_003649340.1|	-	0.13	12.3	0.2	0.13	12.3	0.2	3.9	5	0	0	5	5	5	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
MNHE	PF01899.16	gi|296241854|ref|YP_003649341.1|	-	1.7e-33	115.5	0.1	1.9e-33	115.3	0.1	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
ATP-synt_I	PF03899.15	gi|296241854|ref|YP_003649341.1|	-	0.0028	18.0	1.6	0.0063	16.9	1.6	1.6	1	0	0	1	1	1	1	ATP	synthase	I	chain
Fuseless	PF15993.5	gi|296241854|ref|YP_003649341.1|	-	0.028	13.6	1.5	0.043	13.0	0.5	1.7	1	1	1	2	2	2	0	Fuseless
Oxidored_q2	PF00420.24	gi|296241855|ref|YP_003649342.1|	-	8.3e-19	67.2	3.5	1e-18	66.9	3.5	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
MnhB	PF04039.13	gi|296241856|ref|YP_003649343.1|	-	9.4e-19	67.9	9.0	9.4e-19	67.9	9.0	1.9	2	1	0	2	2	2	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF2106	PF09879.9	gi|296241856|ref|YP_003649343.1|	-	0.0059	16.2	0.0	0.014	15.0	0.0	1.6	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2106)
NrsF	PF06532.11	gi|296241856|ref|YP_003649343.1|	-	0.084	12.6	5.4	0.063	13.0	1.9	2.0	2	0	0	2	2	2	0	Negative	regulator	of	sigma	F
DUF4148	PF13663.6	gi|296241856|ref|YP_003649343.1|	-	0.67	10.2	3.9	2.2	8.5	0.1	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4148)
DUF4040	PF13244.6	gi|296241857|ref|YP_003649344.1|	-	1.4e-12	47.5	6.3	1.4e-12	47.5	6.3	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
DUF2070	PF09843.9	gi|296241857|ref|YP_003649344.1|	-	0.0036	15.7	10.2	0.004	15.5	10.2	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
DUF4305	PF14146.6	gi|296241857|ref|YP_003649344.1|	-	0.025	14.8	1.3	3.5	7.9	0.3	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4305)
SHP	PF03579.13	gi|296241857|ref|YP_003649344.1|	-	1.7	8.6	8.2	0.13	12.2	3.5	1.6	2	1	0	2	2	2	0	Small	hydrophobic	protein
CDP-OH_P_transf	PF01066.21	gi|296241857|ref|YP_003649344.1|	-	5.7	7.8	5.5	13	6.6	5.5	1.7	1	1	0	1	1	1	0	CDP-alcohol	phosphatidyltransferase
DUF5325	PF17259.2	gi|296241857|ref|YP_003649344.1|	-	6.7	6.7	8.2	3.1	7.7	2.5	2.1	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5325)
PhaG_MnhG_YufB	PF03334.14	gi|296241858|ref|YP_003649345.1|	-	9.2e-19	67.5	9.4	1.2e-18	67.1	9.4	1.2	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
Tetraspanin	PF00335.20	gi|296241858|ref|YP_003649345.1|	-	0.55	9.9	5.3	0.88	9.2	5.3	1.4	1	1	0	1	1	1	0	Tetraspanin	family
DUF2975	PF11188.8	gi|296241858|ref|YP_003649345.1|	-	0.93	9.4	5.6	1.8	8.4	5.6	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2975)
DUF2583	PF10762.9	gi|296241858|ref|YP_003649345.1|	-	1	9.8	4.8	0.42	11.1	1.9	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2583)
MrpF_PhaF	PF04066.13	gi|296241859|ref|YP_003649346.1|	-	7e-10	39.2	5.4	7e-10	39.2	5.4	1.8	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
ABC_tran	PF00005.27	gi|296241860|ref|YP_003649347.1|	-	2.8e-27	95.9	0.0	5e-27	95.1	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
DUF4162	PF13732.6	gi|296241860|ref|YP_003649347.1|	-	1.7e-10	41.5	0.5	3.7e-10	40.4	0.2	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_21	PF13304.6	gi|296241860|ref|YP_003649347.1|	-	8.9e-07	29.0	0.1	0.039	13.8	0.2	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|296241860|ref|YP_003649347.1|	-	0.00013	21.5	0.1	0.14	11.6	0.0	2.5	3	0	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
NB-ARC	PF00931.22	gi|296241860|ref|YP_003649347.1|	-	0.0017	17.6	1.7	0.028	13.6	1.7	2.1	1	1	0	1	1	1	1	NB-ARC	domain
KdpD	PF02702.17	gi|296241860|ref|YP_003649347.1|	-	0.0042	16.6	0.4	0.047	13.1	0.1	2.5	2	1	0	3	3	3	1	Osmosensitive	K+	channel	His	kinase	sensor	domain
AAA_23	PF13476.6	gi|296241860|ref|YP_003649347.1|	-	0.0059	17.1	0.3	0.012	16.1	0.3	1.5	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|296241860|ref|YP_003649347.1|	-	0.011	15.4	0.0	0.034	13.8	0.0	1.8	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.6	gi|296241860|ref|YP_003649347.1|	-	0.016	14.9	0.0	0.038	13.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|296241860|ref|YP_003649347.1|	-	0.024	14.4	0.2	0.045	13.5	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|296241860|ref|YP_003649347.1|	-	0.036	14.5	1.7	0.88	10.0	0.6	3.0	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SpoU_sub_bind	PF08032.12	gi|296241860|ref|YP_003649347.1|	-	0.098	12.9	0.1	0.56	10.5	0.0	2.2	2	0	0	2	2	2	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
ABC2_membrane	PF01061.24	gi|296241861|ref|YP_003649348.1|	-	4.4e-13	49.1	12.8	6.5e-13	48.6	12.8	1.3	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|296241861|ref|YP_003649348.1|	-	3.4e-07	30.4	7.6	3.4e-07	30.4	7.6	1.8	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|296241861|ref|YP_003649348.1|	-	0.00058	19.2	15.4	0.00085	18.7	15.4	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
Syndecan	PF01034.20	gi|296241861|ref|YP_003649348.1|	-	1.1	9.3	5.1	0.58	10.1	1.6	2.2	2	0	0	2	2	2	0	Syndecan	domain
ABC2_membrane	PF01061.24	gi|296241862|ref|YP_003649349.1|	-	1.4e-20	73.6	14.0	1.4e-20	73.6	14.0	1.5	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_2	PF12679.7	gi|296241862|ref|YP_003649349.1|	-	3e-10	39.9	11.9	3.7e-10	39.6	11.9	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|296241862|ref|YP_003649349.1|	-	1.2e-07	31.2	14.0	1.2e-07	31.2	14.0	1.2	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|296241862|ref|YP_003649349.1|	-	0.00038	20.1	14.0	0.002	17.7	14.0	2.0	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|296241862|ref|YP_003649349.1|	-	0.23	11.4	8.7	0.68	9.9	0.1	2.6	3	0	0	3	3	3	0	ABC-2	family	transporter	protein
DUF998	PF06197.13	gi|296241863|ref|YP_003649350.1|	-	9.4e-16	57.9	15.2	1.2e-15	57.6	15.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
Syndecan	PF01034.20	gi|296241863|ref|YP_003649350.1|	-	0.11	12.5	0.6	7.3	6.6	0.1	2.6	2	0	0	2	2	2	0	Syndecan	domain
DUF3792	PF12670.7	gi|296241863|ref|YP_003649350.1|	-	0.19	11.9	14.0	0.23	11.6	1.6	2.7	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3792)
DUF1772	PF08592.11	gi|296241863|ref|YP_003649350.1|	-	0.23	11.8	11.6	0.27	11.5	5.1	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1772)
Ribosomal_S25	PF03297.15	gi|296241864|ref|YP_003649351.1|	-	2e-13	50.4	1.0	2.3e-13	50.2	1.0	1.0	1	0	0	1	1	1	1	S25	ribosomal	protein
EAP30	PF04157.16	gi|296241864|ref|YP_003649351.1|	-	0.047	13.0	0.0	0.049	12.9	0.0	1.1	1	0	0	1	1	1	0	EAP30/Vps36	family
Fe_dep_repress	PF01325.19	gi|296241864|ref|YP_003649351.1|	-	0.051	13.8	0.0	0.09	13.0	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
AFOR_C	PF01314.18	gi|296241865|ref|YP_003649352.1|	-	1.2e-123	413.0	0.0	1.5e-123	412.6	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|296241865|ref|YP_003649352.1|	-	8.6e-82	273.8	0.1	4.4e-81	271.5	0.1	2.1	2	0	0	2	2	2	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
ThiS	PF02597.20	gi|296241866|ref|YP_003649353.1|	-	6.3e-08	33.1	0.0	7.1e-08	33.0	0.0	1.1	1	0	0	1	1	1	1	ThiS	family
Urm1	PF09138.11	gi|296241866|ref|YP_003649353.1|	-	0.007	16.7	0.1	0.0077	16.6	0.1	1.2	1	0	0	1	1	1	1	Urm1	(Ubiquitin	related	modifier)
MCM	PF00493.23	gi|296241867|ref|YP_003649354.1|	-	3.8e-102	340.1	0.0	5.5e-102	339.6	0.0	1.2	1	0	0	1	1	1	1	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|296241867|ref|YP_003649354.1|	-	3.6e-36	123.8	0.0	7.1e-36	122.8	0.0	1.5	1	0	0	1	1	1	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|296241867|ref|YP_003649354.1|	-	3.4e-28	97.9	1.3	1e-27	96.3	1.3	1.9	1	0	0	1	1	1	1	MCM	AAA-lid	domain
MCM_N	PF14551.6	gi|296241867|ref|YP_003649354.1|	-	6.6e-18	65.2	1.2	3.5e-17	62.9	1.2	2.3	1	0	0	1	1	1	1	MCM	N-terminal	domain
AAA_5	PF07728.14	gi|296241867|ref|YP_003649354.1|	-	1e-08	35.2	0.0	3.4e-08	33.6	0.0	2.0	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|296241867|ref|YP_003649354.1|	-	3.4e-06	26.6	0.0	0.00095	18.6	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_3	PF07726.11	gi|296241867|ref|YP_003649354.1|	-	0.00018	21.4	0.0	0.00043	20.1	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|296241867|ref|YP_003649354.1|	-	0.0049	16.6	0.1	0.036	13.8	0.1	2.2	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Iron_permease	PF04120.12	gi|296241867|ref|YP_003649354.1|	-	0.047	13.5	0.2	8.1	6.2	0.3	2.7	2	0	0	2	2	2	0	Low	affinity	iron	permease
AAA_16	PF13191.6	gi|296241867|ref|YP_003649354.1|	-	0.063	13.7	0.8	0.23	11.8	0.2	2.2	1	1	0	1	1	1	0	AAA	ATPase	domain
CoaE	PF01121.20	gi|296241867|ref|YP_003649354.1|	-	0.07	12.8	0.8	0.15	11.7	0.1	1.9	2	0	0	2	2	2	0	Dephospho-CoA	kinase
DUF3825	PF12873.7	gi|296241867|ref|YP_003649354.1|	-	0.077	12.4	0.3	0.18	11.3	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3825)
Sld5	PF05916.11	gi|296241868|ref|YP_003649355.1|	-	5.3e-08	33.3	1.2	7.5e-08	32.8	1.2	1.2	1	0	0	1	1	1	1	GINS	complex	protein
CLP1_N	PF16573.5	gi|296241868|ref|YP_003649355.1|	-	0.08	13.2	0.3	0.2	11.9	0.1	1.9	2	1	0	2	2	2	0	N-terminal	beta-sandwich	domain	of	polyadenylation	factor
CENP-X	PF09415.10	gi|296241868|ref|YP_003649355.1|	-	0.2	12.0	1.0	1.3	9.4	0.1	2.4	2	1	0	2	2	2	0	CENP-S	associating	Centromere	protein	X
Rep_fac_C	PF08542.11	gi|296241869|ref|YP_003649356.1|	-	2.9e-24	85.3	0.3	1e-23	83.5	0.1	2.1	2	0	0	2	2	2	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.29	gi|296241869|ref|YP_003649356.1|	-	3.9e-16	59.7	0.0	7.9e-16	58.7	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|296241869|ref|YP_003649356.1|	-	5.2e-15	55.6	0.1	5.6e-11	42.5	0.2	2.3	1	1	1	2	2	2	2	DNA	polymerase	III,	delta	subunit
RuvB_N	PF05496.12	gi|296241869|ref|YP_003649356.1|	-	2.5e-08	33.8	0.0	7e-08	32.4	0.0	1.7	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_3	PF07726.11	gi|296241869|ref|YP_003649356.1|	-	1.1e-07	31.8	0.0	2.2e-07	30.8	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta	PF06144.13	gi|296241869|ref|YP_003649356.1|	-	4.9e-07	29.7	0.1	3.3e-06	27.0	0.0	2.0	2	0	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
AAA_16	PF13191.6	gi|296241869|ref|YP_003649356.1|	-	7.8e-07	29.6	0.1	0.00078	19.9	0.0	2.6	2	1	1	3	3	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|296241869|ref|YP_003649356.1|	-	1.1e-06	29.0	0.3	0.015	15.6	0.0	2.6	1	1	1	2	2	2	2	AAA	domain
Rad17	PF03215.15	gi|296241869|ref|YP_003649356.1|	-	2e-06	27.9	0.0	8.8e-06	25.8	0.0	2.0	2	1	0	2	2	1	1	Rad17	P-loop	domain
AAA_assoc_2	PF16193.5	gi|296241869|ref|YP_003649356.1|	-	2.7e-06	27.6	0.1	7.8e-06	26.1	0.1	1.9	1	0	0	1	1	1	1	AAA	C-terminal	domain
AAA_5	PF07728.14	gi|296241869|ref|YP_003649356.1|	-	5.1e-06	26.5	0.2	6.1e-05	23.0	0.0	2.8	3	1	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.6	gi|296241869|ref|YP_003649356.1|	-	8.2e-06	25.9	0.0	0.00012	22.1	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|296241869|ref|YP_003649356.1|	-	3.8e-05	24.2	0.0	0.00022	21.8	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|296241869|ref|YP_003649356.1|	-	0.00014	21.3	0.1	0.0031	16.9	0.0	2.3	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
PhoH	PF02562.16	gi|296241869|ref|YP_003649356.1|	-	0.00021	20.8	0.1	0.04	13.4	0.0	2.6	1	1	2	3	3	3	1	PhoH-like	protein
AAA_7	PF12775.7	gi|296241869|ref|YP_003649356.1|	-	0.00081	18.9	0.0	0.0013	18.3	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
NTPase_1	PF03266.15	gi|296241869|ref|YP_003649356.1|	-	0.00082	19.3	0.0	0.25	11.2	0.0	2.5	1	1	1	2	2	2	1	NTPase
TniB	PF05621.11	gi|296241869|ref|YP_003649356.1|	-	0.0012	18.3	0.2	0.29	10.5	0.0	2.5	1	1	0	2	2	2	1	Bacterial	TniB	protein
IstB_IS21	PF01695.17	gi|296241869|ref|YP_003649356.1|	-	0.0012	18.6	0.0	0.0036	17.1	0.0	1.8	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
KTI12	PF08433.10	gi|296241869|ref|YP_003649356.1|	-	0.0033	16.9	0.0	0.0057	16.1	0.0	1.4	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
ResIII	PF04851.15	gi|296241869|ref|YP_003649356.1|	-	0.0039	17.2	0.0	0.024	14.7	0.0	2.0	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_11	PF13086.6	gi|296241869|ref|YP_003649356.1|	-	0.0071	16.2	0.0	0.016	15.0	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|296241869|ref|YP_003649356.1|	-	0.0071	15.5	0.0	0.011	14.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|296241869|ref|YP_003649356.1|	-	0.0098	15.6	0.0	0.41	10.3	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_33	PF13671.6	gi|296241869|ref|YP_003649356.1|	-	0.01	16.0	0.1	0.02	15.1	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|296241869|ref|YP_003649356.1|	-	0.012	15.6	0.0	0.23	11.4	0.0	2.3	1	1	0	1	1	1	0	NACHT	domain
AAA_25	PF13481.6	gi|296241869|ref|YP_003649356.1|	-	0.016	14.8	0.1	0.042	13.4	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_2	PF07724.14	gi|296241869|ref|YP_003649356.1|	-	0.016	15.3	0.0	0.034	14.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
T2SSE	PF00437.20	gi|296241869|ref|YP_003649356.1|	-	0.024	13.7	0.0	0.11	11.5	0.0	2.0	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
RNA_helicase	PF00910.22	gi|296241869|ref|YP_003649356.1|	-	0.024	15.0	0.0	0.051	14.0	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_30	PF13604.6	gi|296241869|ref|YP_003649356.1|	-	0.025	14.3	0.1	0.15	11.8	0.1	2.3	2	1	0	2	2	2	0	AAA	domain
Sigma54_activ_2	PF14532.6	gi|296241869|ref|YP_003649356.1|	-	0.031	14.4	0.0	0.12	12.5	0.0	1.9	1	1	0	1	1	1	0	Sigma-54	interaction	domain
AAA_28	PF13521.6	gi|296241869|ref|YP_003649356.1|	-	0.034	14.4	0.0	0.069	13.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|296241869|ref|YP_003649356.1|	-	0.034	13.9	0.0	0.093	12.4	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
TIP49	PF06068.13	gi|296241869|ref|YP_003649356.1|	-	0.037	13.2	0.0	0.075	12.2	0.0	1.5	1	0	0	1	1	1	0	TIP49	P-loop	domain
AAA_19	PF13245.6	gi|296241869|ref|YP_003649356.1|	-	0.047	14.0	0.2	0.34	11.2	0.0	2.2	1	1	1	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|296241869|ref|YP_003649356.1|	-	0.048	13.0	0.1	0.22	10.9	0.0	2.1	2	1	0	2	2	2	0	FtsK/SpoIIIE	family
NB-ARC	PF00931.22	gi|296241869|ref|YP_003649356.1|	-	0.12	11.6	0.0	0.21	10.8	0.0	1.5	1	0	0	1	1	1	0	NB-ARC	domain
APS_kinase	PF01583.20	gi|296241869|ref|YP_003649356.1|	-	0.13	12.1	0.0	0.31	10.9	0.0	1.6	1	0	0	1	1	1	0	Adenylylsulphate	kinase
Viral_helicase1	PF01443.18	gi|296241869|ref|YP_003649356.1|	-	0.18	11.5	0.0	0.29	10.9	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA	PF00004.29	gi|296241870|ref|YP_003649357.1|	-	1.6e-15	57.7	0.1	9.3e-15	55.2	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|296241870|ref|YP_003649357.1|	-	5e-09	36.3	0.1	1.6e-07	31.4	0.0	2.7	2	1	1	3	3	3	1	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|296241870|ref|YP_003649357.1|	-	1.5e-06	28.7	0.5	6.3e-06	26.7	0.1	2.5	2	1	0	2	2	1	1	AAA	ATPase	domain
RFC1	PF08519.12	gi|296241870|ref|YP_003649357.1|	-	2.3e-06	27.9	0.0	3.9e-06	27.1	0.0	1.4	1	0	0	1	1	1	1	Replication	factor	RFC1	C	terminal	domain
RuvB_N	PF05496.12	gi|296241870|ref|YP_003649357.1|	-	4.5e-06	26.5	0.0	7.3e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_14	PF13173.6	gi|296241870|ref|YP_003649357.1|	-	5.5e-06	26.4	0.0	1.1e-05	25.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_5	PF07728.14	gi|296241870|ref|YP_003649357.1|	-	5.7e-06	26.4	0.0	3.8e-05	23.7	0.0	2.3	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
DNA_pol3_delta	PF06144.13	gi|296241870|ref|YP_003649357.1|	-	6.8e-06	26.0	0.0	1.2e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_assoc_2	PF16193.5	gi|296241870|ref|YP_003649357.1|	-	5e-05	23.6	0.1	0.00017	21.9	0.1	2.0	1	0	0	1	1	1	1	AAA	C-terminal	domain
DUF815	PF05673.13	gi|296241870|ref|YP_003649357.1|	-	0.00011	21.4	0.0	0.00023	20.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_22	PF13401.6	gi|296241870|ref|YP_003649357.1|	-	0.00038	20.7	1.6	0.019	15.2	0.0	3.3	3	1	1	4	4	4	1	AAA	domain
ATPase_2	PF01637.18	gi|296241870|ref|YP_003649357.1|	-	0.00057	19.9	1.1	0.0016	18.4	0.1	2.4	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_2	PF07724.14	gi|296241870|ref|YP_003649357.1|	-	0.0012	19.0	0.5	0.0024	18.0	0.1	1.7	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
IstB_IS21	PF01695.17	gi|296241870|ref|YP_003649357.1|	-	0.0019	18.0	0.0	0.0034	17.1	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|296241870|ref|YP_003649357.1|	-	0.002	18.5	0.0	0.0052	17.2	0.0	1.7	1	0	0	1	1	1	1	RNA	helicase
AAA_28	PF13521.6	gi|296241870|ref|YP_003649357.1|	-	0.0024	18.1	0.1	0.045	14.0	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.22	gi|296241870|ref|YP_003649357.1|	-	0.0039	16.4	0.0	0.016	14.4	0.0	2.0	1	1	1	2	2	2	1	NB-ARC	domain
NACHT	PF05729.12	gi|296241870|ref|YP_003649357.1|	-	0.0045	16.9	0.2	0.047	13.6	0.0	2.6	2	1	1	3	3	3	1	NACHT	domain
AAA_33	PF13671.6	gi|296241870|ref|YP_003649357.1|	-	0.0045	17.1	0.0	0.012	15.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_7	PF12775.7	gi|296241870|ref|YP_003649357.1|	-	0.0063	16.0	0.0	0.012	15.1	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
TsaE	PF02367.17	gi|296241870|ref|YP_003649357.1|	-	0.0064	16.5	0.0	0.013	15.5	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Viral_helicase1	PF01443.18	gi|296241870|ref|YP_003649357.1|	-	0.0083	15.9	0.0	0.015	15.0	0.0	1.4	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
Bac_DnaA	PF00308.18	gi|296241870|ref|YP_003649357.1|	-	0.014	15.3	0.1	0.061	13.2	0.1	2.0	1	1	0	1	1	1	0	Bacterial	dnaA	protein
AAA_18	PF13238.6	gi|296241870|ref|YP_003649357.1|	-	0.014	16.0	0.0	0.045	14.3	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|296241870|ref|YP_003649357.1|	-	0.016	14.6	0.0	0.1	12.0	0.0	2.1	1	1	1	2	2	2	0	Bacterial	TniB	protein
ABC_tran	PF00005.27	gi|296241870|ref|YP_003649357.1|	-	0.028	14.9	0.1	0.18	12.3	0.0	2.2	1	1	1	2	2	2	0	ABC	transporter
Zeta_toxin	PF06414.12	gi|296241870|ref|YP_003649357.1|	-	0.03	13.6	0.0	0.048	12.9	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_23	PF13476.6	gi|296241870|ref|YP_003649357.1|	-	0.035	14.6	0.4	0.067	13.7	0.4	1.9	1	1	0	1	1	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|296241870|ref|YP_003649357.1|	-	0.055	13.2	0.0	0.16	11.6	0.0	1.8	1	0	0	1	1	1	0	Cytidylate	kinase
TIP49	PF06068.13	gi|296241870|ref|YP_003649357.1|	-	0.059	12.6	0.0	0.11	11.7	0.0	1.4	1	0	0	1	1	1	0	TIP49	P-loop	domain
AAA_11	PF13086.6	gi|296241870|ref|YP_003649357.1|	-	0.064	13.0	0.0	2.3	7.9	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_8	PF12780.7	gi|296241870|ref|YP_003649357.1|	-	0.12	11.7	0.0	0.23	10.8	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region	D4
Mg_chelatase	PF01078.21	gi|296241870|ref|YP_003649357.1|	-	0.12	11.8	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.6	gi|296241870|ref|YP_003649357.1|	-	0.12	11.9	0.0	0.64	9.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|296241870|ref|YP_003649357.1|	-	0.14	11.9	0.0	0.29	10.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|296241870|ref|YP_003649357.1|	-	0.15	11.5	0.0	0.43	10.0	0.0	1.6	1	1	1	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
Parvo_NS1	PF01057.17	gi|296241870|ref|YP_003649357.1|	-	0.17	11.0	0.0	0.34	10.0	0.0	1.4	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
AAA_6	PF12774.7	gi|296241870|ref|YP_003649357.1|	-	0.17	10.8	0.0	0.31	10.0	0.0	1.4	1	0	0	1	1	1	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
AAA_29	PF13555.6	gi|296241870|ref|YP_003649357.1|	-	0.17	11.7	0.0	0.35	10.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Cdc6_C	PF09079.11	gi|296241871|ref|YP_003649358.1|	-	1.7e-20	72.8	0.2	4.7e-20	71.4	0.2	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|296241871|ref|YP_003649358.1|	-	4.7e-13	49.6	0.0	1.1e-12	48.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|296241871|ref|YP_003649358.1|	-	4.7e-07	30.3	0.2	2.6e-06	27.9	0.2	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
TniB	PF05621.11	gi|296241871|ref|YP_003649358.1|	-	6.1e-06	25.8	0.0	9.2e-06	25.2	0.0	1.2	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA_24	PF13479.6	gi|296241871|ref|YP_003649358.1|	-	0.0013	18.5	0.0	0.0021	17.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|296241871|ref|YP_003649358.1|	-	0.002	18.5	0.0	0.0042	17.5	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|296241871|ref|YP_003649358.1|	-	0.011	14.9	0.0	0.04	13.1	0.0	1.8	2	0	0	2	2	2	0	NB-ARC	domain
IstB_IS21	PF01695.17	gi|296241871|ref|YP_003649358.1|	-	0.012	15.3	0.0	0.028	14.1	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Sigma54_activat	PF00158.26	gi|296241871|ref|YP_003649358.1|	-	0.013	15.2	0.0	0.025	14.3	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_assoc_2	PF16193.5	gi|296241871|ref|YP_003649358.1|	-	0.017	15.4	0.0	0.04	14.2	0.0	1.6	1	0	0	1	1	1	0	AAA	C-terminal	domain
DUF2075	PF09848.9	gi|296241871|ref|YP_003649358.1|	-	0.033	13.4	0.0	0.049	12.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
TsaE	PF02367.17	gi|296241871|ref|YP_003649358.1|	-	0.034	14.1	0.0	0.065	13.2	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ATPase_2	PF01637.18	gi|296241871|ref|YP_003649358.1|	-	0.039	13.9	0.1	0.085	12.8	0.1	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_7	PF12775.7	gi|296241871|ref|YP_003649358.1|	-	0.057	12.9	0.0	0.22	11.0	0.1	2.0	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
TFIID-31kDa	PF02291.15	gi|296241871|ref|YP_003649358.1|	-	0.079	13.0	0.0	0.14	12.3	0.0	1.3	1	0	0	1	1	1	0	Transcription	initiation	factor	IID,	31kD	subunit
ATPase	PF06745.13	gi|296241871|ref|YP_003649358.1|	-	0.11	11.8	0.0	0.25	10.7	0.0	1.6	1	0	0	1	1	1	0	KaiC
EF-hand_7	PF13499.6	gi|296241871|ref|YP_003649358.1|	-	0.13	12.7	0.3	8.8	6.9	0.0	3.1	3	0	0	3	3	3	0	EF-hand	domain	pair
CitMHS	PF03600.16	gi|296241873|ref|YP_003649360.1|	-	1.3e-26	93.5	34.1	1.3e-26	93.5	34.1	1.9	1	1	1	2	2	2	2	Citrate	transporter
RuvB_C	PF05491.13	gi|296241874|ref|YP_003649361.1|	-	0.14	12.0	0.0	0.21	11.5	0.0	1.2	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
4HBT	PF03061.22	gi|296241875|ref|YP_003649362.1|	-	6.6e-05	23.2	0.0	8.4e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
zf-DBF	PF07535.12	gi|296241875|ref|YP_003649362.1|	-	0.23	11.6	0.5	5.5	7.2	0.1	2.5	3	0	0	3	3	3	0	DBF	zinc	finger
Nudix_N_2	PF14803.6	gi|296241876|ref|YP_003649363.1|	-	0.0035	17.2	0.3	0.17	11.8	0.1	2.3	2	0	0	2	2	2	1	Nudix	N-terminal
zinc_ribbon_10	PF10058.9	gi|296241876|ref|YP_003649363.1|	-	0.019	14.7	0.5	1.5	8.6	0.1	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
TF_Zn_Ribbon	PF08271.12	gi|296241876|ref|YP_003649363.1|	-	0.027	14.0	1.8	1.3	8.6	0.2	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
TFIIS_C	PF01096.18	gi|296241876|ref|YP_003649363.1|	-	0.096	12.6	0.3	9.3	6.2	0.0	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
HypA	PF01155.19	gi|296241876|ref|YP_003649363.1|	-	0.12	12.4	0.0	0.17	11.9	0.0	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|296241876|ref|YP_003649363.1|	-	0.14	11.9	5.0	2.4	7.9	0.7	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-TFIIB	PF13453.6	gi|296241876|ref|YP_003649363.1|	-	0.22	10.9	0.1	0.22	10.9	0.1	1.9	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-ribbon_3	PF13248.6	gi|296241876|ref|YP_003649363.1|	-	0.62	9.6	5.3	3.6	7.1	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
tRNA_NucTransf2	PF09249.11	gi|296241878|ref|YP_003649365.1|	-	3.8e-39	133.4	0.0	7.1e-39	132.6	0.0	1.5	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|296241878|ref|YP_003649365.1|	-	8.6e-12	45.2	0.0	2.7e-11	43.6	0.0	1.9	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
SMODS	PF18144.1	gi|296241878|ref|YP_003649365.1|	-	5e-06	26.8	0.0	1.3e-05	25.5	0.0	1.6	1	0	0	1	1	1	1	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
PSII_Pbs27	PF13326.6	gi|296241878|ref|YP_003649365.1|	-	0.15	12.3	0.0	0.5	10.7	0.0	1.8	2	0	0	2	2	2	0	Photosystem	II	Pbs27
Phage_Mu_Gam	PF07352.12	gi|296241878|ref|YP_003649365.1|	-	0.16	11.9	3.8	0.18	11.7	0.0	2.6	3	0	0	3	3	3	0	Bacteriophage	Mu	Gam	like	protein
LigT_PEase	PF02834.16	gi|296241879|ref|YP_003649366.1|	-	2.6e-33	114.1	0.1	1.3e-17	63.7	0.0	2.0	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.6	gi|296241879|ref|YP_003649366.1|	-	1.5e-13	50.9	0.0	1.8e-13	50.7	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.9	gi|296241879|ref|YP_003649366.1|	-	1.7e-12	47.7	0.0	7.2e-12	45.6	0.0	1.7	1	1	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
HVSL	PF09749.9	gi|296241879|ref|YP_003649366.1|	-	0.0084	15.6	0.0	0.018	14.6	0.0	1.4	1	1	0	2	2	2	1	Uncharacterised	conserved	protein
AAA_17	PF13207.6	gi|296241880|ref|YP_003649367.1|	-	1.1e-17	64.8	0.1	1.5e-17	64.3	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|296241880|ref|YP_003649367.1|	-	5.1e-11	43.2	0.1	8.4e-11	42.5	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|296241880|ref|YP_003649367.1|	-	1.1e-06	28.8	0.0	2e-06	28.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|296241880|ref|YP_003649367.1|	-	0.014	15.8	0.2	0.027	14.9	0.2	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|296241880|ref|YP_003649367.1|	-	0.016	14.9	0.1	0.043	13.5	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|296241880|ref|YP_003649367.1|	-	0.021	14.5	0.0	0.03	14.0	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA	PF00004.29	gi|296241880|ref|YP_003649367.1|	-	0.023	15.1	0.2	0.04	14.4	0.2	1.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|296241880|ref|YP_003649367.1|	-	0.061	12.6	0.2	0.22	10.8	0.1	1.8	1	1	1	2	2	2	0	Zeta	toxin
AAA_22	PF13401.6	gi|296241880|ref|YP_003649367.1|	-	0.072	13.4	0.4	0.42	10.9	0.4	2.2	1	1	0	1	1	1	0	AAA	domain
ATP_bind_2	PF03668.15	gi|296241880|ref|YP_003649367.1|	-	0.094	12.0	0.2	0.12	11.6	0.2	1.4	1	1	0	1	1	1	0	P-loop	ATPase	protein	family
THF_DHG_CYH_C	PF02882.19	gi|296241880|ref|YP_003649367.1|	-	0.12	11.7	0.0	0.25	10.6	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DUF2075	PF09848.9	gi|296241880|ref|YP_003649367.1|	-	0.19	11.0	0.7	0.35	10.1	0.4	1.4	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
RNA_binding	PF01877.17	gi|296241881|ref|YP_003649368.1|	-	3.6e-14	53.0	0.1	6.8e-14	52.2	0.1	1.4	1	1	0	1	1	1	1	RNA	binding
Lactamase_B_2	PF12706.7	gi|296241882|ref|YP_003649369.1|	-	2.8e-21	75.9	0.1	3.5e-21	75.7	0.1	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|296241882|ref|YP_003649369.1|	-	1.5e-12	48.0	0.0	2.3e-12	47.4	0.0	1.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|296241882|ref|YP_003649369.1|	-	2.1e-09	36.9	0.0	3.9e-09	36.1	0.0	1.5	1	0	0	1	1	1	1	tRNase	Z	endonuclease
Dimeth_Pyl	PF09505.10	gi|296241882|ref|YP_003649369.1|	-	0.038	12.5	0.0	0.053	12.1	0.0	1.3	1	0	0	1	1	1	0	Dimethylamine	methyltransferase	(Dimeth_PyL)
UPF0020	PF01170.18	gi|296241883|ref|YP_003649370.1|	-	2.3e-20	73.2	0.0	1.6e-19	70.3	0.0	2.0	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
N6_N4_Mtase	PF01555.18	gi|296241883|ref|YP_003649370.1|	-	9e-10	38.7	0.0	1e-06	28.6	0.0	2.6	2	1	1	3	3	3	2	DNA	methylase
Met_10	PF02475.16	gi|296241883|ref|YP_003649370.1|	-	0.071	12.8	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	Met-10+	like-protein
Pribosyltran_N	PF13793.6	gi|296241884|ref|YP_003649371.1|	-	2.7e-21	75.6	0.0	3.9e-20	71.9	0.0	2.1	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|296241884|ref|YP_003649371.1|	-	2.6e-15	56.3	0.7	5.6e-15	55.2	0.5	1.6	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|296241884|ref|YP_003649371.1|	-	3.4e-10	40.3	2.4	7.2e-10	39.2	1.6	1.8	2	0	0	2	2	2	1	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.6	gi|296241884|ref|YP_003649371.1|	-	0.0043	16.5	0.0	0.0087	15.5	0.0	1.5	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|296241884|ref|YP_003649371.1|	-	0.13	11.7	0.0	0.23	10.9	0.0	1.5	1	0	0	1	1	1	0	Phosphoribosyl	transferase
Glyco_trans_4_5	PF16994.5	gi|296241884|ref|YP_003649371.1|	-	0.16	11.6	0.3	2.6	7.6	0.0	2.4	2	1	0	2	2	2	0	Glycosyl-transferase	family	4
Radical_SAM	PF04055.21	gi|296241885|ref|YP_003649372.1|	-	1.2e-20	74.5	0.0	3.5e-20	73.1	0.0	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|296241885|ref|YP_003649372.1|	-	0.014	15.7	0.0	0.033	14.4	0.0	1.6	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Zn_Tnp_IS1595	PF12760.7	gi|296241885|ref|YP_003649372.1|	-	0.026	14.5	1.0	0.026	14.5	1.0	2.9	3	0	0	3	3	3	0	Transposase	zinc-ribbon	domain
DpnI	PF06044.12	gi|296241885|ref|YP_003649372.1|	-	0.043	13.4	3.0	0.31	10.6	0.4	2.3	3	0	0	3	3	3	0	Dam-replacing	family
RNA_POL_M_15KD	PF02150.16	gi|296241885|ref|YP_003649372.1|	-	0.048	13.6	3.5	0.12	12.3	1.5	2.5	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
IBR	PF01485.21	gi|296241885|ref|YP_003649372.1|	-	0.11	12.8	0.5	0.11	12.8	0.5	2.1	3	0	0	3	3	3	0	IBR	domain,	a	half	RING-finger	domain
zf-C4_Topoisom	PF01396.19	gi|296241885|ref|YP_003649372.1|	-	0.47	10.3	0.0	0.47	10.3	0.0	3.1	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-LITAF-like	PF10601.9	gi|296241885|ref|YP_003649372.1|	-	2.6	8.4	8.8	17	5.8	0.1	3.7	4	0	0	4	4	4	0	LITAF-like	zinc	ribbon	domain
ATP_bind_1	PF03029.17	gi|296241886|ref|YP_003649373.1|	-	4.2e-59	200.3	0.0	4.7e-59	200.1	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
CLP1_P	PF16575.5	gi|296241886|ref|YP_003649373.1|	-	1.3e-05	25.1	0.0	0.00027	20.8	0.0	2.1	2	0	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
CbiA	PF01656.23	gi|296241886|ref|YP_003649373.1|	-	2.1e-05	24.6	0.0	2.1e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_18	PF13238.6	gi|296241886|ref|YP_003649373.1|	-	5.1e-05	23.8	0.0	0.00016	22.3	0.0	1.8	2	1	0	2	2	1	1	AAA	domain
GTP_EFTU	PF00009.27	gi|296241886|ref|YP_003649373.1|	-	0.00028	20.5	0.0	0.014	14.9	0.0	2.2	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
SRP54	PF00448.22	gi|296241886|ref|YP_003649373.1|	-	0.00038	20.1	0.0	0.0058	16.3	0.0	2.1	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.6	gi|296241886|ref|YP_003649373.1|	-	0.00094	19.0	0.0	0.0015	18.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|296241886|ref|YP_003649373.1|	-	0.0012	18.0	0.0	0.002	17.3	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
PduV-EutP	PF10662.9	gi|296241886|ref|YP_003649373.1|	-	0.0017	18.1	0.0	0.16	11.7	0.0	2.5	2	1	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
NACHT	PF05729.12	gi|296241886|ref|YP_003649373.1|	-	0.0035	17.3	0.0	0.019	14.9	0.0	2.0	2	0	0	2	2	2	1	NACHT	domain
AAA_16	PF13191.6	gi|296241886|ref|YP_003649373.1|	-	0.0044	17.4	0.0	0.0086	16.5	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
MobB	PF03205.14	gi|296241886|ref|YP_003649373.1|	-	0.01	15.7	0.0	0.023	14.6	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RsgA_GTPase	PF03193.16	gi|296241886|ref|YP_003649373.1|	-	0.011	15.6	0.0	3.4	7.6	0.0	3.1	3	0	0	3	3	3	0	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|296241886|ref|YP_003649373.1|	-	0.014	15.5	0.0	0.029	14.4	0.0	1.6	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_31	PF13614.6	gi|296241886|ref|YP_003649373.1|	-	0.017	15.1	0.2	2.2	8.1	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
AAA_28	PF13521.6	gi|296241886|ref|YP_003649373.1|	-	0.02	15.1	0.0	0.06	13.6	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|296241886|ref|YP_003649373.1|	-	0.02	14.2	0.0	0.031	13.6	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
AAA_7	PF12775.7	gi|296241886|ref|YP_003649373.1|	-	0.021	14.3	0.0	0.031	13.8	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_22	PF13401.6	gi|296241886|ref|YP_003649373.1|	-	0.026	14.8	0.0	0.064	13.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|296241886|ref|YP_003649373.1|	-	0.035	13.7	0.0	0.18	11.4	0.0	1.9	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
NTPase_1	PF03266.15	gi|296241886|ref|YP_003649373.1|	-	0.045	13.7	0.0	0.17	11.8	0.0	1.8	2	0	0	2	2	2	0	NTPase
ABC_tran	PF00005.27	gi|296241886|ref|YP_003649373.1|	-	0.083	13.4	0.0	0.17	12.4	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
DUF2075	PF09848.9	gi|296241886|ref|YP_003649373.1|	-	0.083	12.1	0.0	0.21	10.8	0.0	1.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
FtsK_SpoIIIE	PF01580.18	gi|296241886|ref|YP_003649373.1|	-	0.087	12.2	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
KTI12	PF08433.10	gi|296241886|ref|YP_003649373.1|	-	0.09	12.2	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
dNK	PF01712.19	gi|296241886|ref|YP_003649373.1|	-	0.099	12.5	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	Deoxynucleoside	kinase
AAA	PF00004.29	gi|296241886|ref|YP_003649373.1|	-	0.1	13.0	0.0	0.34	11.4	0.0	1.9	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MeaB	PF03308.16	gi|296241886|ref|YP_003649373.1|	-	0.11	11.5	0.0	0.21	10.5	0.0	1.4	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_19	PF13245.6	gi|296241886|ref|YP_003649373.1|	-	0.12	12.7	0.0	0.26	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.18	gi|296241886|ref|YP_003649373.1|	-	0.12	12.1	0.0	0.17	11.6	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.6	gi|296241886|ref|YP_003649373.1|	-	0.14	11.8	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|296241886|ref|YP_003649373.1|	-	0.16	12.0	0.1	1.2	9.2	0.0	2.0	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
PIF1	PF05970.14	gi|296241886|ref|YP_003649373.1|	-	0.17	11.0	0.0	0.27	10.4	0.0	1.2	1	0	0	1	1	1	0	PIF1-like	helicase
TrwB_AAD_bind	PF10412.9	gi|296241886|ref|YP_003649373.1|	-	0.25	10.2	0.0	0.43	9.4	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Succ_CoA_lig	PF13607.6	gi|296241887|ref|YP_003649374.1|	-	4.7e-47	159.2	2.1	2.4e-46	157.0	0.5	2.7	3	0	0	3	3	3	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|296241887|ref|YP_003649374.1|	-	1.4e-29	102.9	0.1	2e-28	99.2	0.0	2.8	3	1	0	3	3	3	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|296241887|ref|YP_003649374.1|	-	4e-15	56.3	0.1	8.5e-14	52.0	0.0	2.5	2	0	0	2	2	2	1	CoA	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|296241887|ref|YP_003649374.1|	-	0.045	13.7	0.1	0.22	11.5	0.0	2.0	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Ferrochelatase	PF00762.19	gi|296241887|ref|YP_003649374.1|	-	0.045	12.8	0.0	0.078	12.0	0.0	1.3	1	0	0	1	1	1	0	Ferrochelatase
ATP-grasp_5	PF13549.6	gi|296241888|ref|YP_003649375.1|	-	2.9e-80	268.9	0.2	3.2e-80	268.7	0.2	1.0	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.10	gi|296241888|ref|YP_003649375.1|	-	5.4e-06	26.1	0.2	7.8e-06	25.6	0.2	1.6	1	1	0	1	1	1	1	ATP-grasp	domain
Toprim_C_rpt	PF13368.6	gi|296241888|ref|YP_003649375.1|	-	0.12	12.3	0.0	0.36	10.8	0.0	1.7	1	0	0	1	1	1	0	Topoisomerase	C-terminal	repeat
EzrA	PF06160.12	gi|296241889|ref|YP_003649376.1|	-	0.00012	20.4	37.1	0.0047	15.2	10.4	2.2	1	1	1	2	2	2	2	Septation	ring	formation	regulator,	EzrA
Spc7	PF08317.11	gi|296241889|ref|YP_003649376.1|	-	0.00042	19.3	49.7	0.046	12.6	18.4	3.6	1	1	2	3	3	3	2	Spc7	kinetochore	protein
LPP	PF04728.13	gi|296241889|ref|YP_003649376.1|	-	0.00043	20.6	15.1	0.63	10.5	0.3	5.2	4	2	2	6	6	5	2	Lipoprotein	leucine-zipper
CCDC106	PF15794.5	gi|296241889|ref|YP_003649376.1|	-	0.00059	19.6	12.0	0.00059	19.6	12.0	3.2	1	1	2	3	3	1	1	Coiled-coil	domain-containing	protein	106
DUF948	PF06103.11	gi|296241889|ref|YP_003649376.1|	-	0.0024	18.1	13.3	1.7	9.0	3.0	4.3	2	1	2	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
HAP1_N	PF04849.13	gi|296241889|ref|YP_003649376.1|	-	0.004	16.4	2.8	0.004	16.4	2.8	2.8	1	1	1	2	2	2	1	HAP1	N-terminal	conserved	region
Sec34	PF04136.15	gi|296241889|ref|YP_003649376.1|	-	0.0054	16.6	22.7	0.19	11.6	0.8	4.3	1	1	4	5	5	5	4	Sec34-like	family
DUF1664	PF07889.12	gi|296241889|ref|YP_003649376.1|	-	0.0062	16.6	7.6	0.0062	16.6	7.6	3.9	1	1	3	4	4	4	1	Protein	of	unknown	function	(DUF1664)
KASH_CCD	PF14662.6	gi|296241889|ref|YP_003649376.1|	-	0.0088	15.9	50.7	0.53	10.1	18.8	3.7	1	1	2	3	3	3	1	Coiled-coil	region	of	CCDC155	or	KASH
DUF4201	PF13870.6	gi|296241889|ref|YP_003649376.1|	-	0.012	15.3	53.6	0.066	12.9	6.8	4.2	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4201)
SHE3	PF17078.5	gi|296241889|ref|YP_003649376.1|	-	0.02	14.6	35.0	0.12	12.1	11.1	2.8	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
DUF1409	PF07197.12	gi|296241889|ref|YP_003649376.1|	-	0.022	14.6	4.2	12	5.8	0.1	3.7	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1409)
FapA	PF03961.13	gi|296241889|ref|YP_003649376.1|	-	0.038	12.6	43.0	0.27	9.8	23.0	2.7	1	1	2	3	3	3	0	Flagellar	Assembly	Protein	A
Atg14	PF10186.9	gi|296241889|ref|YP_003649376.1|	-	0.062	12.4	48.2	0.017	14.3	21.6	3.0	1	1	2	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
CENP-F_leu_zip	PF10473.9	gi|296241889|ref|YP_003649376.1|	-	0.063	13.3	59.2	0.03	14.3	21.7	4.0	1	1	3	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Golgin_A5	PF09787.9	gi|296241889|ref|YP_003649376.1|	-	0.065	12.7	44.1	0.053	13.0	23.1	2.3	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
YabA	PF06156.13	gi|296241889|ref|YP_003649376.1|	-	0.093	13.4	42.9	0.072	13.7	2.9	5.0	1	1	3	4	4	3	0	Initiation	control	protein	YabA
HOOK	PF05622.12	gi|296241889|ref|YP_003649376.1|	-	0.098	10.8	45.5	0.062	11.4	12.1	2.2	1	1	1	2	2	2	0	HOOK	protein
ATG16	PF08614.11	gi|296241889|ref|YP_003649376.1|	-	0.11	12.7	42.8	0.52	10.5	17.3	2.9	1	1	2	3	3	3	0	Autophagy	protein	16	(ATG16)
GAS	PF13851.6	gi|296241889|ref|YP_003649376.1|	-	0.16	11.3	53.3	0.72	9.2	25.4	3.4	1	1	2	3	3	3	0	Growth-arrest	specific	micro-tubule	binding
IFT57	PF10498.9	gi|296241889|ref|YP_003649376.1|	-	0.17	10.8	36.7	0.58	9.1	25.5	2.3	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
AAA_13	PF13166.6	gi|296241889|ref|YP_003649376.1|	-	0.24	10.0	35.0	0.88	8.1	9.2	2.5	1	1	1	2	2	2	0	AAA	domain
NPV_P10	PF05531.12	gi|296241889|ref|YP_003649376.1|	-	0.27	11.7	19.9	16	6.0	0.1	5.1	2	1	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
Occludin_ELL	PF07303.13	gi|296241889|ref|YP_003649376.1|	-	0.29	11.9	28.8	6.5	7.5	5.7	4.7	2	2	2	5	5	5	0	Occludin	homology	domain
Glutaminase	PF04960.15	gi|296241889|ref|YP_003649376.1|	-	0.36	10.0	2.8	0.34	10.0	0.8	1.8	1	1	2	3	3	3	0	Glutaminase
Nup54	PF13874.6	gi|296241889|ref|YP_003649376.1|	-	0.62	10.2	38.6	0.13	12.4	16.0	3.5	1	1	2	3	3	3	0	Nucleoporin	complex	subunit	54
Seryl_tRNA_N	PF02403.22	gi|296241889|ref|YP_003649376.1|	-	0.75	10.1	51.9	0.11	12.7	3.7	4.8	1	1	4	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
APG6_N	PF17675.1	gi|296241889|ref|YP_003649376.1|	-	0.76	10.3	55.1	0.37	11.3	17.3	3.9	1	1	3	4	4	4	0	Apg6	coiled-coil	region
GP57	PF17594.2	gi|296241889|ref|YP_003649376.1|	-	0.83	9.4	8.8	0.96	9.2	0.9	4.0	2	2	2	4	4	4	0	Phage	Tail	fiber	assembly	helper	gene	product	57
Leu_zip	PF15294.6	gi|296241889|ref|YP_003649376.1|	-	1.1	8.7	40.7	2	7.9	22.2	2.5	2	1	0	2	2	2	0	Leucine	zipper
eIF3_N	PF09440.10	gi|296241889|ref|YP_003649376.1|	-	1.2	9.6	25.9	0.082	13.4	4.4	3.9	1	1	4	5	5	5	0	eIF3	subunit	6	N	terminal	domain
Jnk-SapK_ap_N	PF09744.9	gi|296241889|ref|YP_003649376.1|	-	1.2	9.3	46.9	0.12	12.6	16.6	3.6	1	1	2	3	3	3	0	JNK_SAPK-associated	protein-1
APG17	PF04108.12	gi|296241889|ref|YP_003649376.1|	-	1.4	8.0	28.4	0.32	10.0	4.3	3.1	1	1	2	3	3	3	0	Autophagy	protein	Apg17
OmpH	PF03938.14	gi|296241889|ref|YP_003649376.1|	-	1.5	9.2	43.0	18	5.6	13.6	4.0	1	1	1	2	2	1	0	Outer	membrane	protein	(OmpH-like)
PI_PP_I	PF18363.1	gi|296241889|ref|YP_003649376.1|	-	1.5	9.0	11.4	19	5.5	0.4	4.0	1	1	4	5	5	5	0	Phosphoinositide	phosphatase	insertion	domain
VPS11_C	PF12451.8	gi|296241889|ref|YP_003649376.1|	-	1.6	9.0	6.7	0.45	10.8	0.4	3.4	3	0	0	3	3	1	0	Vacuolar	protein	sorting	protein	11	C	terminal
Fez1	PF06818.15	gi|296241889|ref|YP_003649376.1|	-	1.6	9.1	42.1	17	5.8	12.2	3.0	1	1	1	2	2	2	0	Fez1
TPR_MLP1_2	PF07926.12	gi|296241889|ref|YP_003649376.1|	-	1.9	8.5	46.6	3.5	7.7	5.3	4.2	1	1	2	3	3	3	0	TPR/MLP1/MLP2-like	protein
MbeD_MobD	PF04899.12	gi|296241889|ref|YP_003649376.1|	-	2.1	8.5	11.9	0.9	9.7	0.5	4.1	3	1	1	4	4	3	0	MbeD/MobD	like
MCPsignal	PF00015.21	gi|296241889|ref|YP_003649376.1|	-	2.2	8.0	13.5	0.12	12.1	1.6	3.0	2	1	1	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
YkyA	PF10368.9	gi|296241889|ref|YP_003649376.1|	-	2.4	7.8	46.0	1.7	8.3	9.7	3.2	1	1	1	3	3	3	0	Putative	cell-wall	binding	lipoprotein
Filament	PF00038.21	gi|296241889|ref|YP_003649376.1|	-	2.6	7.6	44.5	0.76	9.3	8.6	3.3	1	1	0	2	2	2	0	Intermediate	filament	protein
GOLGA2L5	PF15070.6	gi|296241889|ref|YP_003649376.1|	-	3.2	6.3	37.9	2.1	6.9	21.5	3.0	1	1	0	1	1	1	0	Putative	golgin	subfamily	A	member	2-like	protein	5
Prominin	PF05478.11	gi|296241889|ref|YP_003649376.1|	-	4	5.3	29.2	7.4	4.4	5.4	2.6	1	1	1	2	2	2	0	Prominin
DUF3584	PF12128.8	gi|296241889|ref|YP_003649376.1|	-	4.3	4.7	39.2	5.4	4.4	39.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
FAD-SLDH	PF12318.8	gi|296241889|ref|YP_003649376.1|	-	4.3	7.4	6.0	8	6.5	0.4	3.2	2	1	1	3	3	3	0	Membrane	bound	FAD	containing	D-sorbitol	dehydrogenase
SKA1	PF07160.12	gi|296241889|ref|YP_003649376.1|	-	4.7	7.0	33.9	8.3	6.2	9.9	3.4	1	1	2	3	3	3	0	Spindle	and	kinetochore-associated	protein	1
JIP_LZII	PF16471.5	gi|296241889|ref|YP_003649376.1|	-	5	7.4	47.9	0.12	12.6	1.7	6.5	3	2	2	6	6	6	0	JNK-interacting	protein	leucine	zipper	II
MCD_N	PF17408.2	gi|296241889|ref|YP_003649376.1|	-	6.7	6.9	17.2	0.75	10.0	4.5	3.5	2	1	1	3	3	3	0	Malonyl-CoA	decarboxylase	N-terminal	domain
P4Ha_N	PF08336.11	gi|296241889|ref|YP_003649376.1|	-	6.8	6.7	33.2	6	6.9	0.4	4.6	2	1	2	4	4	4	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
HMMR_N	PF15905.5	gi|296241889|ref|YP_003649376.1|	-	6.9	6.0	49.8	1.9	7.9	29.1	2.3	1	1	1	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
Cluap1	PF10234.9	gi|296241889|ref|YP_003649376.1|	-	8.5	5.7	38.3	3	7.2	4.4	3.5	1	1	1	2	2	1	0	Clusterin-associated	protein-1
Tmp39	PF10271.9	gi|296241889|ref|YP_003649376.1|	-	9	5.2	5.5	5.1	6.0	0.3	2.2	2	0	0	2	2	2	0	Putative	transmembrane	protein
Prenyltransf	PF01255.19	gi|296241890|ref|YP_003649377.1|	-	2.1e-77	259.6	0.0	2.5e-77	259.4	0.0	1.0	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Ribosomal_S8e	PF01201.22	gi|296241891|ref|YP_003649378.1|	-	6.6e-31	107.3	1.2	8.2e-31	107.0	1.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8e
SRP19	PF01922.17	gi|296241892|ref|YP_003649379.1|	-	1.6e-24	86.7	0.0	2.1e-24	86.3	0.0	1.2	1	0	0	1	1	1	1	SRP19	protein
Gar1	PF04410.14	gi|296241893|ref|YP_003649380.1|	-	2e-07	30.9	0.0	2.3e-07	30.7	0.0	1.0	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
PRC	PF05239.16	gi|296241893|ref|YP_003649380.1|	-	0.0046	17.0	0.3	0.015	15.4	0.0	1.8	2	0	0	2	2	2	1	PRC-barrel	domain
Rep_fac-A_3	PF08661.11	gi|296241893|ref|YP_003649380.1|	-	0.083	13.2	0.0	0.1	13.0	0.0	1.1	1	0	0	1	1	1	0	Replication	factor	A	protein	3
TFIIB	PF00382.19	gi|296241894|ref|YP_003649381.1|	-	4.5e-14	52.2	0.2	5e-08	32.9	0.0	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|296241894|ref|YP_003649381.1|	-	3.5e-09	36.0	0.3	7.7e-09	34.9	0.3	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|296241894|ref|YP_003649381.1|	-	1.9e-06	27.9	0.0	0.0049	16.9	0.0	2.3	1	1	1	2	2	2	2	Cyclin,	C-terminal	domain
Ribosomal_S27e	PF01667.17	gi|296241894|ref|YP_003649381.1|	-	0.00023	20.8	0.5	0.00043	19.9	0.5	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S27
FAM86	PF14904.6	gi|296241894|ref|YP_003649381.1|	-	0.05	13.7	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	Family	of	unknown	function
Cyclin_N	PF00134.23	gi|296241894|ref|YP_003649381.1|	-	0.063	13.0	0.1	0.16	11.7	0.0	1.7	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
DUF2318	PF10080.9	gi|296241894|ref|YP_003649381.1|	-	0.086	13.0	0.1	0.15	12.2	0.1	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
Transglut_core	PF01841.19	gi|296241895|ref|YP_003649382.1|	-	2.2e-11	44.2	0.0	4.1e-11	43.3	0.0	1.5	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
Podoplanin	PF05808.11	gi|296241895|ref|YP_003649382.1|	-	0.0078	16.3	1.3	0.014	15.5	1.3	1.3	1	0	0	1	1	1	1	Podoplanin
Epiglycanin_C	PF14654.6	gi|296241895|ref|YP_003649382.1|	-	0.013	15.5	0.0	0.051	13.6	0.0	1.9	2	0	0	2	2	2	0	Mucin,	catalytic,	TM	and	cytoplasmic	tail	region
DUF2613	PF11021.8	gi|296241895|ref|YP_003649382.1|	-	0.032	14.3	1.9	0.12	12.5	1.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2613)
TMEM154	PF15102.6	gi|296241895|ref|YP_003649382.1|	-	0.095	12.6	0.1	0.19	11.6	0.1	1.4	1	0	0	1	1	1	0	TMEM154	protein	family
LapA_dom	PF06305.11	gi|296241895|ref|YP_003649382.1|	-	0.14	11.9	0.2	0.27	11.1	0.2	1.4	1	0	0	1	1	1	0	Lipopolysaccharide	assembly	protein	A	domain
Acetyltransf_2	PF00797.17	gi|296241895|ref|YP_003649382.1|	-	0.14	11.9	0.0	0.45	10.3	0.0	1.7	1	1	0	1	1	1	0	N-acetyltransferase
TrmB	PF01978.19	gi|296241896|ref|YP_003649383.1|	-	4.6e-05	23.2	0.2	8.9e-05	22.3	0.2	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|296241896|ref|YP_003649383.1|	-	7.7e-05	22.5	0.0	0.00014	21.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|296241896|ref|YP_003649383.1|	-	0.00012	21.9	0.0	0.00021	21.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|296241896|ref|YP_003649383.1|	-	0.00022	21.0	0.0	0.00032	20.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|296241896|ref|YP_003649383.1|	-	0.00023	21.3	0.1	0.00033	20.8	0.1	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_11	PF08279.12	gi|296241896|ref|YP_003649383.1|	-	0.0014	18.5	0.4	0.0031	17.4	0.1	1.7	2	0	0	2	2	2	1	HTH	domain
DUF2250	PF10007.9	gi|296241896|ref|YP_003649383.1|	-	0.0028	17.7	0.2	0.0041	17.2	0.2	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
RNA_pol_Rpc34	PF05158.12	gi|296241896|ref|YP_003649383.1|	-	0.0031	17.0	0.7	0.91	8.8	0.0	2.1	1	1	1	2	2	2	2	RNA	polymerase	Rpc34	subunit
HTH_24	PF13412.6	gi|296241896|ref|YP_003649383.1|	-	0.012	15.2	0.1	0.027	14.0	0.1	1.6	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Trans_reg_C	PF00486.28	gi|296241896|ref|YP_003649383.1|	-	0.048	13.7	0.1	0.1	12.7	0.1	1.6	1	0	0	1	1	1	0	Transcriptional	regulatory	protein,	C	terminal
TFIIE_alpha	PF02002.17	gi|296241896|ref|YP_003649383.1|	-	0.053	13.4	1.2	0.069	13.0	0.4	1.7	2	1	0	2	2	2	0	TFIIE	alpha	subunit
HTH_34	PF13601.6	gi|296241896|ref|YP_003649383.1|	-	0.064	13.5	0.1	0.11	12.7	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|296241896|ref|YP_003649383.1|	-	0.075	13.4	0.0	0.13	12.6	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_27	PF13463.6	gi|296241896|ref|YP_003649383.1|	-	0.11	13.1	0.0	0.17	12.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TRM	PF02005.16	gi|296241897|ref|YP_003649384.1|	-	5.6e-75	252.9	0.0	6.2e-75	252.7	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Met_10	PF02475.16	gi|296241897|ref|YP_003649384.1|	-	8.6e-07	28.9	0.0	1.5e-06	28.1	0.0	1.5	2	0	0	2	2	2	1	Met-10+	like-protein
Cons_hypoth95	PF03602.15	gi|296241897|ref|YP_003649384.1|	-	5e-06	26.3	0.0	1e-05	25.3	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
PrmA	PF06325.13	gi|296241897|ref|YP_003649384.1|	-	0.073	12.5	0.0	0.11	11.8	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
NTPase_1	PF03266.15	gi|296241898|ref|YP_003649385.1|	-	2.2e-48	164.3	0.5	2.6e-48	164.1	0.5	1.0	1	0	0	1	1	1	1	NTPase
AAA	PF00004.29	gi|296241898|ref|YP_003649385.1|	-	0.00076	19.9	0.1	0.0011	19.4	0.1	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MeaB	PF03308.16	gi|296241898|ref|YP_003649385.1|	-	0.00083	18.4	0.4	0.0012	17.9	0.4	1.2	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_22	PF13401.6	gi|296241898|ref|YP_003649385.1|	-	0.0013	19.0	0.2	0.0029	17.9	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.23	gi|296241898|ref|YP_003649385.1|	-	0.0028	17.7	0.2	0.0034	17.4	0.2	1.5	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_30	PF13604.6	gi|296241898|ref|YP_003649385.1|	-	0.003	17.3	0.5	0.0068	16.1	0.5	1.7	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|296241898|ref|YP_003649385.1|	-	0.0041	17.1	0.4	0.059	13.3	0.0	2.2	2	1	0	2	2	2	1	NACHT	domain
AAA_16	PF13191.6	gi|296241898|ref|YP_003649385.1|	-	0.0061	17.0	0.1	0.0061	17.0	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.6	gi|296241898|ref|YP_003649385.1|	-	0.0064	17.0	0.6	0.028	15.0	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|296241898|ref|YP_003649385.1|	-	0.0099	15.9	0.3	1.8	8.6	0.0	2.3	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.6	gi|296241898|ref|YP_003649385.1|	-	0.012	16.0	1.3	0.051	13.9	0.3	2.0	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|296241898|ref|YP_003649385.1|	-	0.016	14.4	0.3	0.028	13.6	0.3	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_17	PF13207.6	gi|296241898|ref|YP_003649385.1|	-	0.043	14.2	0.2	0.16	12.4	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
KTI12	PF08433.10	gi|296241898|ref|YP_003649385.1|	-	0.044	13.2	0.0	0.071	12.5	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
RNA_helicase	PF00910.22	gi|296241898|ref|YP_003649385.1|	-	0.044	14.2	0.0	0.073	13.5	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
DAP3	PF10236.9	gi|296241898|ref|YP_003649385.1|	-	0.1	11.8	0.5	0.15	11.2	0.1	1.5	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
ABC_tran	PF00005.27	gi|296241898|ref|YP_003649385.1|	-	0.1	13.1	0.1	0.11	13.0	0.1	1.4	1	1	0	1	1	1	0	ABC	transporter
ParA	PF10609.9	gi|296241898|ref|YP_003649385.1|	-	0.11	11.9	0.3	0.19	11.1	0.3	1.3	1	0	0	1	1	1	0	NUBPL	iron-transfer	P-loop	NTPase
Zeta_toxin	PF06414.12	gi|296241898|ref|YP_003649385.1|	-	0.14	11.4	0.0	0.26	10.6	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_29	PF13555.6	gi|296241898|ref|YP_003649385.1|	-	0.15	11.8	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|296241898|ref|YP_003649385.1|	-	0.15	12.2	0.2	0.33	11.1	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.9	gi|296241898|ref|YP_003649385.1|	-	0.17	11.1	0.1	0.23	10.7	0.1	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
HTH_3	PF01381.22	gi|296241899|ref|YP_003649386.1|	-	1.2e-10	41.3	0.1	3.4e-10	39.8	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|296241899|ref|YP_003649386.1|	-	3.6e-07	30.1	0.2	1.3e-06	28.3	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|296241899|ref|YP_003649386.1|	-	3e-05	24.3	0.0	7e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Mrr_cat	PF04471.12	gi|296241899|ref|YP_003649386.1|	-	0.0016	18.5	0.1	0.0032	17.5	0.1	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
Crp	PF00325.20	gi|296241899|ref|YP_003649386.1|	-	0.0048	16.5	0.0	0.013	15.1	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	crp	family
HTH_Crp_2	PF13545.6	gi|296241899|ref|YP_003649386.1|	-	0.0094	15.9	0.0	0.11	12.5	0.0	2.5	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
MqsA_antitoxin	PF15731.5	gi|296241899|ref|YP_003649386.1|	-	0.046	13.8	0.0	0.1	12.7	0.0	1.8	1	1	0	1	1	1	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
MerR	PF00376.23	gi|296241899|ref|YP_003649386.1|	-	0.12	12.2	0.0	0.32	10.8	0.0	1.7	1	0	0	1	1	1	0	MerR	family	regulatory	protein
Fibrillarin	PF01269.17	gi|296241900|ref|YP_003649387.1|	-	9.5e-104	345.4	0.1	1.1e-103	345.2	0.1	1.0	1	0	0	1	1	1	1	Fibrillarin
PCMT	PF01135.19	gi|296241900|ref|YP_003649387.1|	-	0.00068	19.5	0.0	0.0012	18.6	0.0	1.4	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
GCD14	PF08704.10	gi|296241900|ref|YP_003649387.1|	-	0.026	14.2	0.0	0.059	13.0	0.0	1.5	1	1	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
Nop	PF01798.18	gi|296241901|ref|YP_003649388.1|	-	9.4e-70	234.7	0.0	1.2e-69	234.3	0.0	1.1	1	0	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
Ribosomal_S30	PF04758.14	gi|296241902|ref|YP_003649389.1|	-	7.7e-14	51.6	1.9	8.8e-14	51.4	1.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S30
Na_H_antiporter	PF03553.14	gi|296241903|ref|YP_003649390.1|	-	5.6e-75	252.4	21.6	5.6e-75	252.4	21.6	2.4	1	1	1	2	2	2	1	Na+/H+	antiporter	family
PetG	PF02529.15	gi|296241903|ref|YP_003649390.1|	-	0.059	13.2	1.9	0.26	11.2	1.9	2.2	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	subunit	5
Rad10	PF03834.14	gi|296241903|ref|YP_003649390.1|	-	0.17	11.9	0.1	1.2	9.2	0.0	2.1	2	0	0	2	2	2	0	Binding	domain	of	DNA	repair	protein	Ercc1	(rad10/Swi10)
DUF2270	PF10028.9	gi|296241903|ref|YP_003649390.1|	-	0.27	10.8	6.5	0.11	12.1	2.0	2.6	3	0	0	3	3	3	0	Predicted	integral	membrane	protein	(DUF2270)
Asparaginase	PF00710.20	gi|296241904|ref|YP_003649391.1|	-	3.2e-51	173.6	0.0	6.4e-51	172.6	0.0	1.5	1	0	0	1	1	1	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|296241904|ref|YP_003649391.1|	-	1.4e-33	115.5	0.0	3.5e-33	114.2	0.0	1.7	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|296241904|ref|YP_003649391.1|	-	5.4e-19	67.3	0.3	1.2e-18	66.1	0.2	1.7	2	0	0	2	2	2	1	GatD	N-terminal	domain
Peripla_BP_4	PF13407.6	gi|296241904|ref|YP_003649391.1|	-	0.21	11.1	0.0	7	6.1	0.0	2.2	2	0	0	2	2	2	0	Periplasmic	binding	protein	domain
GatB_N	PF02934.15	gi|296241905|ref|YP_003649392.1|	-	1.5e-69	234.4	0.0	2.3e-69	233.8	0.0	1.3	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|296241905|ref|YP_003649392.1|	-	4.9e-22	78.4	4.8	1.2e-21	77.2	4.8	1.7	1	0	0	1	1	1	1	GatB	domain
GAD	PF02938.14	gi|296241905|ref|YP_003649392.1|	-	3.1e-20	72.2	0.1	9.5e-20	70.6	0.0	2.0	2	0	0	2	2	2	1	GAD	domain
YqeY	PF09424.10	gi|296241905|ref|YP_003649392.1|	-	0.0091	16.1	1.7	0.024	14.7	1.7	1.7	1	0	0	1	1	1	1	Yqey-like	protein
ATP-cone	PF03477.16	gi|296241905|ref|YP_003649392.1|	-	0.15	12.6	1.9	1.6	9.3	0.3	3.0	1	1	1	2	2	2	0	ATP	cone	domain
RdRP	PF05183.12	gi|296241905|ref|YP_003649392.1|	-	0.19	10.3	0.4	0.27	9.8	0.4	1.2	1	0	0	1	1	1	0	RNA	dependent	RNA	polymerase
COMMD1_N	PF17221.3	gi|296241905|ref|YP_003649392.1|	-	0.25	11.7	1.1	1.6	9.0	0.2	2.6	2	0	0	2	2	2	0	COMMD1	N-terminal	domain
Chordopox_A33R	PF05966.12	gi|296241906|ref|YP_003649393.1|	-	0.083	12.2	0.0	0.1	11.9	0.0	1.1	1	0	0	1	1	1	0	Chordopoxvirus	A33R	protein
HTH_40	PF14493.6	gi|296241907|ref|YP_003649394.1|	-	0.025	15.0	0.1	0.075	13.5	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|296241907|ref|YP_003649394.1|	-	0.033	14.2	0.1	0.087	12.9	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|296241907|ref|YP_003649394.1|	-	0.063	12.8	0.0	0.13	11.8	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_23	PF13384.6	gi|296241907|ref|YP_003649394.1|	-	0.07	13.0	0.0	0.21	11.4	0.0	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
MarR_2	PF12802.7	gi|296241907|ref|YP_003649394.1|	-	0.12	12.3	0.0	0.35	10.8	0.0	1.7	2	0	0	2	2	2	0	MarR	family
HTH_3	PF01381.22	gi|296241907|ref|YP_003649394.1|	-	0.17	12.0	0.5	0.62	10.2	0.1	2.1	2	1	0	2	2	2	0	Helix-turn-helix
Metallophos	PF00149.28	gi|296241908|ref|YP_003649395.1|	-	1.6e-21	77.7	0.0	2e-21	77.4	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|296241908|ref|YP_003649395.1|	-	0.00018	21.7	0.0	0.00035	20.8	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Ca_bind_SSO6904	PF18249.1	gi|296241909|ref|YP_003649396.1|	-	0.048	14.0	0.9	0.34	11.3	0.1	2.1	1	1	1	2	2	2	0	Calcium	binding	protein	SSO6904
Cut8	PF08559.10	gi|296241910|ref|YP_003649397.1|	-	0.003	17.2	0.3	0.0046	16.6	0.3	1.2	1	0	0	1	1	1	1	Cut8,	nuclear	proteasome	tether	protein
Yippee-Mis18	PF03226.14	gi|296241910|ref|YP_003649397.1|	-	0.09	13.0	0.0	0.19	11.9	0.0	1.6	1	0	0	1	1	1	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
TF_Zn_Ribbon	PF08271.12	gi|296241910|ref|YP_003649397.1|	-	0.094	12.2	0.4	0.23	11.0	0.4	1.7	1	0	0	1	1	1	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|296241910|ref|YP_003649397.1|	-	0.23	10.9	3.3	4	7.0	0.3	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Thioredoxin	PF00085.20	gi|296241911|ref|YP_003649398.1|	-	0.00084	19.3	0.0	0.001	19.0	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Cpn60_TCP1	PF00118.24	gi|296241912|ref|YP_003649399.1|	-	5.3e-180	599.2	15.6	6e-180	599.0	15.6	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
RuvB_C	PF05491.13	gi|296241912|ref|YP_003649399.1|	-	0.14	12.1	0.4	0.85	9.5	0.1	2.5	2	0	0	2	2	2	0	RuvB	C-terminal	winged	helix	domain
Med20	PF08612.11	gi|296241912|ref|YP_003649399.1|	-	0.16	11.3	0.0	0.3	10.4	0.0	1.4	1	0	0	1	1	1	0	TATA-binding	related	factor	(TRF)	of	subunit	20	of	Mediator	complex
RNA_pol_Rpb6	PF01192.22	gi|296241913|ref|YP_003649400.1|	-	4.9e-10	39.2	0.1	1e-09	38.2	0.0	1.5	2	0	0	2	2	2	1	RNA	polymerase	Rpb6
Peptidase_M50	PF02163.22	gi|296241914|ref|YP_003649401.1|	-	2.9e-10	39.8	11.2	1.4e-07	31.1	2.4	2.4	1	1	1	2	2	2	2	Peptidase	family	M50
Topoisom_bac	PF01131.20	gi|296241915|ref|YP_003649402.1|	-	1.9e-106	356.6	0.0	2.6e-106	356.1	0.0	1.2	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|296241915|ref|YP_003649402.1|	-	8.9e-14	51.6	0.0	4.1e-13	49.4	0.0	2.2	2	0	0	2	2	2	1	Toprim	domain
V_ATPase_I	PF01496.19	gi|296241915|ref|YP_003649402.1|	-	0.038	11.9	0.1	0.055	11.4	0.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
PIN_12	PF16289.5	gi|296241915|ref|YP_003649402.1|	-	0.83	10.1	4.1	0.87	10.1	0.5	2.4	1	1	0	2	2	2	0	PIN	domain
Peptidase_S24	PF00717.23	gi|296241916|ref|YP_003649403.1|	-	4.6e-09	36.1	1.3	8.2e-09	35.3	1.3	1.5	1	1	0	1	1	1	1	Peptidase	S24-like
HypA	PF01155.19	gi|296241917|ref|YP_003649404.1|	-	0.00035	20.6	1.2	0.25	11.3	0.0	2.6	2	1	1	3	3	3	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_4	PF13717.6	gi|296241917|ref|YP_003649404.1|	-	0.00055	19.8	2.0	0.22	11.5	0.0	2.5	2	0	0	2	2	2	2	zinc-ribbon	domain
Elf1	PF05129.13	gi|296241917|ref|YP_003649404.1|	-	0.001	19.0	0.6	0.0036	17.3	0.6	1.8	1	1	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
zinc_ribbon_5	PF13719.6	gi|296241917|ref|YP_003649404.1|	-	0.0018	18.0	2.3	0.051	13.3	0.3	2.4	2	0	0	2	2	2	1	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|296241917|ref|YP_003649404.1|	-	0.0023	17.6	1.6	0.42	10.3	0.1	2.4	2	0	0	2	2	2	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
Mu-like_Com	PF10122.9	gi|296241917|ref|YP_003649404.1|	-	0.0023	17.3	1.2	0.084	12.3	0.0	2.4	2	0	0	2	2	2	1	Mu-like	prophage	protein	Com
Lar_restr_allev	PF14354.6	gi|296241917|ref|YP_003649404.1|	-	0.0033	17.8	0.3	0.006	16.9	0.3	1.6	1	1	0	1	1	1	1	Restriction	alleviation	protein	Lar
TFIIS_C	PF01096.18	gi|296241917|ref|YP_003649404.1|	-	0.0045	16.8	2.6	1.2	9.1	0.4	2.2	2	0	0	2	2	2	2	Transcription	factor	S-II	(TFIIS)
zf-IS66	PF13005.7	gi|296241917|ref|YP_003649404.1|	-	0.01	16.3	1.0	0.038	14.4	0.1	2.1	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.12	gi|296241917|ref|YP_003649404.1|	-	0.01	15.3	5.6	0.021	14.3	2.4	2.6	2	1	0	2	2	2	0	TFIIB	zinc-binding
Zn_ribbon_recom	PF13408.6	gi|296241917|ref|YP_003649404.1|	-	0.011	16.2	2.0	0.46	11.0	0.5	2.3	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|296241917|ref|YP_003649404.1|	-	0.012	15.6	2.4	0.36	10.8	0.1	2.4	3	0	0	3	3	2	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.6	gi|296241917|ref|YP_003649404.1|	-	0.012	15.3	3.1	1.3	8.8	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|296241917|ref|YP_003649404.1|	-	0.013	15.6	0.3	0.49	10.5	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF4379	PF14311.6	gi|296241917|ref|YP_003649404.1|	-	0.014	15.8	2.4	0.46	10.9	0.2	2.3	2	0	0	2	2	2	0	Probable	Zinc-ribbon	domain
CpXC	PF14353.6	gi|296241917|ref|YP_003649404.1|	-	0.02	14.9	0.1	0.033	14.2	0.1	1.3	1	0	0	1	1	1	0	CpXC	protein
zf-ISL3	PF14690.6	gi|296241917|ref|YP_003649404.1|	-	0.027	15.1	0.3	3.3	8.4	0.0	2.3	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DZR	PF12773.7	gi|296241917|ref|YP_003649404.1|	-	0.047	13.7	0.0	0.08	13.0	0.0	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
UPF0547	PF10571.9	gi|296241917|ref|YP_003649404.1|	-	0.059	13.5	2.7	2.6	8.2	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|296241917|ref|YP_003649404.1|	-	0.078	12.4	5.4	0.56	9.7	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|296241917|ref|YP_003649404.1|	-	0.13	11.9	1.3	3.3	7.5	0.0	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-tcix	PF14952.6	gi|296241917|ref|YP_003649404.1|	-	0.13	11.9	4.4	0.98	9.1	0.5	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Zn_Tnp_IS1595	PF12760.7	gi|296241917|ref|YP_003649404.1|	-	0.18	11.8	1.9	2.1	8.4	2.3	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_13	PF09855.9	gi|296241917|ref|YP_003649404.1|	-	0.38	11.0	3.0	18	5.6	0.1	2.5	2	1	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-FPG_IleRS	PF06827.14	gi|296241917|ref|YP_003649404.1|	-	1.4	8.8	6.0	1.6	8.7	0.1	2.8	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
CRIM	PF16978.5	gi|296241918|ref|YP_003649405.1|	-	0.1	12.7	0.2	0.44	10.7	0.0	1.9	1	1	0	2	2	2	0	SAPK-interacting	protein	1	(Sin1),	middle	CRIM	domain
Enolase_C	PF00113.22	gi|296241919|ref|YP_003649406.1|	-	4.4e-118	393.8	0.0	5.7e-118	393.5	0.0	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|296241919|ref|YP_003649406.1|	-	3.4e-51	172.8	0.1	5.7e-51	172.1	0.1	1.4	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|296241919|ref|YP_003649406.1|	-	1.1e-08	34.9	0.0	1.8e-08	34.2	0.0	1.4	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MAAL_C	PF07476.11	gi|296241919|ref|YP_003649406.1|	-	0.0001	21.6	0.0	0.00016	21.0	0.0	1.4	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
MIG-14_Wnt-bd	PF06664.12	gi|296241920|ref|YP_003649407.1|	-	0.013	14.7	3.6	0.013	14.8	3.6	1.0	1	0	0	1	1	1	0	Wnt-binding	factor	required	for	Wnt	secretion
Phage_holin_3_6	PF07332.11	gi|296241920|ref|YP_003649407.1|	-	3.3	7.8	8.5	4.3	7.4	8.5	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
CdvA	PF18822.1	gi|296241921|ref|YP_003649408.1|	-	1.9e-35	121.3	12.2	2.6e-35	120.9	12.2	1.2	1	0	0	1	1	1	1	CdvA-like	coiled-coil	domain
Baculo_PEP_C	PF04513.12	gi|296241921|ref|YP_003649408.1|	-	0.0034	17.4	0.0	0.0059	16.6	0.0	1.3	1	0	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Poty_PP	PF08440.10	gi|296241921|ref|YP_003649408.1|	-	0.0074	15.4	1.3	0.018	14.2	0.4	1.7	1	1	1	2	2	2	1	Potyviridae	polyprotein
PRC	PF05239.16	gi|296241921|ref|YP_003649408.1|	-	0.016	15.3	0.1	0.016	15.3	0.1	2.6	4	0	0	4	4	4	0	PRC-barrel	domain
Fib_alpha	PF08702.10	gi|296241921|ref|YP_003649408.1|	-	0.091	12.9	6.3	0.1	12.8	1.4	2.3	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
PDE4_UCR	PF18100.1	gi|296241921|ref|YP_003649408.1|	-	0.2	12.3	2.8	0.51	11.0	0.6	2.3	1	1	2	3	3	3	0	Phosphodiesterase	4	upstream	conserved	regions	(UCR)
Sld5	PF05916.11	gi|296241921|ref|YP_003649408.1|	-	0.69	10.4	4.2	0.51	10.8	1.8	1.9	1	1	1	2	2	2	0	GINS	complex	protein
ISG65-75	PF11727.8	gi|296241921|ref|YP_003649408.1|	-	0.79	8.9	6.3	1.7	7.8	1.9	2.0	2	0	0	2	2	2	0	Invariant	surface	glycoprotein
MerR-DNA-bind	PF09278.11	gi|296241921|ref|YP_003649408.1|	-	2	9.0	6.5	2.6	8.7	0.2	2.9	3	0	0	3	3	3	0	MerR,	DNA	binding
DUF3086	PF11285.8	gi|296241922|ref|YP_003649409.1|	-	0.033	13.3	0.4	0.049	12.7	0.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3086)
Trimer_CC	PF08954.11	gi|296241922|ref|YP_003649409.1|	-	0.22	11.1	2.1	7.4	6.2	0.2	2.6	2	0	0	2	2	2	0	Trimerisation	motif
Prominin	PF05478.11	gi|296241922|ref|YP_003649409.1|	-	0.25	9.3	1.3	0.69	7.8	1.2	1.6	1	1	0	1	1	1	0	Prominin
DASH_Duo1	PF08651.10	gi|296241922|ref|YP_003649409.1|	-	0.26	11.1	1.8	0.44	10.4	0.3	2.1	2	1	0	2	2	2	0	DASH	complex	subunit	Duo1
AAA	PF00004.29	gi|296241923|ref|YP_003649410.1|	-	2.5e-32	112.0	0.1	1.7e-31	109.4	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT	PF04212.18	gi|296241923|ref|YP_003649410.1|	-	7e-14	51.6	1.2	2e-13	50.2	1.2	1.9	1	0	0	1	1	1	1	MIT	(microtubule	interacting	and	transport)	domain
AAA_lid_3	PF17862.1	gi|296241923|ref|YP_003649410.1|	-	5.8e-06	26.0	0.1	1.4e-05	24.8	0.0	1.8	2	0	0	2	2	1	1	AAA+	lid	domain
Vps4_C	PF09336.10	gi|296241923|ref|YP_003649410.1|	-	2.7e-05	24.1	0.0	6.3e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	Vps4	C	terminal	oligomerisation	domain
RuvB_N	PF05496.12	gi|296241923|ref|YP_003649410.1|	-	0.00028	20.7	0.1	0.0011	18.7	0.1	2.2	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|296241923|ref|YP_003649410.1|	-	0.00037	20.7	0.1	0.0011	19.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|296241923|ref|YP_003649410.1|	-	0.00048	20.5	0.0	0.39	11.1	0.0	3.0	2	1	1	3	3	3	1	AAA	ATPase	domain
TPR_1	PF00515.28	gi|296241923|ref|YP_003649410.1|	-	0.00081	19.1	2.3	0.046	13.6	0.3	2.7	2	0	0	2	2	2	1	Tetratricopeptide	repeat
AAA_5	PF07728.14	gi|296241923|ref|YP_003649410.1|	-	0.0012	18.9	0.0	0.0039	17.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|296241923|ref|YP_003649410.1|	-	0.0013	19.2	0.3	0.0048	17.4	0.0	2.2	2	1	1	3	3	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|296241923|ref|YP_003649410.1|	-	0.0015	18.3	0.0	0.0029	17.4	0.0	1.4	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
TPR_2	PF07719.17	gi|296241923|ref|YP_003649410.1|	-	0.0029	17.6	1.4	0.034	14.2	0.2	3.0	2	1	1	3	3	2	1	Tetratricopeptide	repeat
TIP49	PF06068.13	gi|296241923|ref|YP_003649410.1|	-	0.011	15.0	1.9	0.036	13.3	0.0	2.4	2	1	1	3	3	3	0	TIP49	P-loop	domain
TPR_8	PF13181.6	gi|296241923|ref|YP_003649410.1|	-	0.011	15.9	4.1	0.056	13.7	0.7	3.2	2	1	1	3	3	3	0	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|296241923|ref|YP_003649410.1|	-	0.012	15.6	0.5	0.062	13.4	0.1	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
RNA_helicase	PF00910.22	gi|296241923|ref|YP_003649410.1|	-	0.013	15.9	0.1	0.1	13.0	0.0	2.5	3	0	0	3	3	3	0	RNA	helicase
Zeta_toxin	PF06414.12	gi|296241923|ref|YP_003649410.1|	-	0.017	14.4	0.0	0.051	12.8	0.0	1.8	2	0	0	2	2	2	0	Zeta	toxin
AAA_22	PF13401.6	gi|296241923|ref|YP_003649410.1|	-	0.02	15.2	0.0	0.35	11.1	0.0	2.6	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|296241923|ref|YP_003649410.1|	-	0.021	14.9	0.0	0.08	13.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|296241923|ref|YP_003649410.1|	-	0.022	14.5	0.0	0.042	13.6	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_24	PF13479.6	gi|296241923|ref|YP_003649410.1|	-	0.044	13.5	0.0	0.11	12.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.6	gi|296241923|ref|YP_003649410.1|	-	0.083	13.3	0.1	1.5	9.3	0.0	2.7	2	1	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|296241923|ref|YP_003649410.1|	-	0.099	12.9	0.0	0.22	11.7	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|296241923|ref|YP_003649410.1|	-	0.1	12.1	0.0	0.25	10.8	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Thioredoxin_2	PF13098.6	gi|296241923|ref|YP_003649410.1|	-	0.11	13.0	0.0	0.57	10.7	0.0	2.1	2	0	0	2	2	2	0	Thioredoxin-like	domain
AAA_25	PF13481.6	gi|296241923|ref|YP_003649410.1|	-	0.11	12.1	0.1	0.77	9.3	0.0	2.1	1	1	0	2	2	2	0	AAA	domain
Phage_int_SAM_5	PF13102.6	gi|296241923|ref|YP_003649410.1|	-	0.13	12.6	2.6	28	5.1	0.0	3.6	2	1	2	4	4	4	0	Phage	integrase	SAM-like	domain
AAA_33	PF13671.6	gi|296241923|ref|YP_003649410.1|	-	0.17	12.0	0.0	0.49	10.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|296241923|ref|YP_003649410.1|	-	0.18	11.4	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
PAC2	PF09754.9	gi|296241924|ref|YP_003649411.1|	-	6.6e-36	124.3	0.2	7.6e-36	124.1	0.2	1.1	1	0	0	1	1	1	1	PAC2	family
RCC_reductase	PF06405.11	gi|296241924|ref|YP_003649411.1|	-	0.034	13.3	0.8	0.68	9.1	0.0	2.3	1	1	1	2	2	2	0	Red	chlorophyll	catabolite	reductase	(RCC	reductase)
HSP20	PF00011.21	gi|296241925|ref|YP_003649412.1|	-	0.014	15.5	0.0	0.018	15.2	0.0	1.2	1	0	0	1	1	1	0	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|296241925|ref|YP_003649412.1|	-	0.043	13.4	0.0	0.21	11.2	0.0	1.9	1	1	1	2	2	2	0	HSP20-like	domain	found	in	ArsA
RNase_HII	PF01351.18	gi|296241926|ref|YP_003649413.1|	-	4.8e-38	131.0	0.0	5.7e-38	130.8	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
MMR_HSR1_Xtn	PF16897.5	gi|296241927|ref|YP_003649414.1|	-	2.2e-21	75.9	0.2	4.3e-21	74.9	0.0	1.6	2	0	0	2	2	2	1	C-terminal	region	of	MMR_HSR1	domain
TGS	PF02824.21	gi|296241927|ref|YP_003649414.1|	-	4.6e-18	65.0	0.0	9.7e-18	64.0	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
MMR_HSR1	PF01926.23	gi|296241927|ref|YP_003649414.1|	-	4.1e-15	55.9	0.0	1e-14	54.6	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|296241927|ref|YP_003649414.1|	-	2.6e-09	36.8	0.0	5.8e-08	32.4	0.0	2.2	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|296241927|ref|YP_003649414.1|	-	0.00086	18.9	0.1	3.7	7.0	0.0	3.5	2	1	1	3	3	3	1	Elongation	factor	Tu	GTP	binding	domain
YchF-GTPase_C	PF06071.13	gi|296241927|ref|YP_003649414.1|	-	0.014	15.5	0.5	0.41	10.9	0.0	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF933)
SRPRB	PF09439.10	gi|296241927|ref|YP_003649414.1|	-	0.025	14.0	0.0	0.044	13.2	0.0	1.4	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
MeaB	PF03308.16	gi|296241927|ref|YP_003649414.1|	-	0.034	13.1	0.0	4.6	6.1	0.0	2.4	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_24	PF13479.6	gi|296241927|ref|YP_003649414.1|	-	0.1	12.3	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
6PF2K	PF01591.18	gi|296241927|ref|YP_003649414.1|	-	0.16	11.2	0.0	0.66	9.2	0.0	2.0	2	0	0	2	2	2	0	6-phosphofructo-2-kinase
AAA_28	PF13521.6	gi|296241927|ref|YP_003649414.1|	-	0.17	12.1	0.1	2.8	8.2	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
PGM_PMM_I	PF02878.16	gi|296241930|ref|YP_003649417.1|	-	1.4e-40	138.2	0.0	3e-40	137.1	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|296241930|ref|YP_003649417.1|	-	1.9e-24	86.2	0.0	6.3e-24	84.6	0.0	1.9	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|296241930|ref|YP_003649417.1|	-	7.7e-23	80.9	0.0	1.4e-22	80.1	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|296241930|ref|YP_003649417.1|	-	2e-14	53.5	0.3	5.4e-14	52.1	0.3	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
MA-Mit	PF09245.10	gi|296241930|ref|YP_003649417.1|	-	0.042	13.3	0.0	0.16	11.4	0.0	1.8	2	0	0	2	2	2	0	Mycoplasma	arthritidis-derived	mitogen
Ribosomal_L9_C	PF03948.14	gi|296241930|ref|YP_003649417.1|	-	0.13	12.8	0.1	0.47	11.0	0.1	2.0	1	1	0	1	1	1	0	Ribosomal	protein	L9,	C-terminal	domain
Trm112p	PF03966.16	gi|296241931|ref|YP_003649418.1|	-	2.8e-12	47.0	1.2	4.3e-12	46.4	1.2	1.3	1	0	0	1	1	1	1	Trm112p-like	protein
zf-RING_7	PF02591.15	gi|296241931|ref|YP_003649418.1|	-	0.18	12.0	0.7	0.18	12.0	0.7	2.0	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|296241931|ref|YP_003649418.1|	-	1.5	8.3	8.6	3.9	7.0	0.1	2.8	2	1	1	3	3	3	0	zinc-ribbon	domain
CK_II_beta	PF01214.18	gi|296241931|ref|YP_003649418.1|	-	1.7	8.5	5.0	1.3	8.8	4.1	1.4	1	1	0	1	1	1	0	Casein	kinase	II	regulatory	subunit
DUF2153	PF09921.9	gi|296241932|ref|YP_003649419.1|	-	3.3e-52	175.5	1.7	3.9e-52	175.3	1.7	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2153)
VPR	PF00522.18	gi|296241932|ref|YP_003649419.1|	-	0.047	13.7	0.9	0.14	12.3	0.4	2.0	1	1	0	1	1	1	0	VPR/VPX	protein
PHP	PF02811.19	gi|296241932|ref|YP_003649419.1|	-	0.15	12.4	0.0	1.3	9.3	0.0	2.0	1	1	1	2	2	2	0	PHP	domain
DUF5053	PF16476.5	gi|296241933|ref|YP_003649420.1|	-	0.049	13.3	0.2	0.14	11.9	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5053)
AAA_assoc_C	PF09821.9	gi|296241933|ref|YP_003649420.1|	-	0.058	13.9	0.1	0.096	13.2	0.1	1.4	1	0	0	1	1	1	0	C-terminal	AAA-associated	domain
Herpes_LMP1	PF05297.11	gi|296241934|ref|YP_003649421.1|	-	0.34	10.1	1.2	0.45	9.7	1.2	1.1	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
TIP49	PF06068.13	gi|296241935|ref|YP_003649422.1|	-	1.1e-136	455.7	0.2	2.3e-136	454.6	0.4	1.4	2	0	0	2	2	2	1	TIP49	P-loop	domain
TIP49_C	PF17856.1	gi|296241935|ref|YP_003649422.1|	-	4.7e-26	90.7	2.1	1e-25	89.6	0.9	2.3	2	0	0	2	2	2	1	TIP49	AAA-lid	domain
AAA	PF00004.29	gi|296241935|ref|YP_003649422.1|	-	3.5e-13	50.1	1.9	4e-09	37.0	0.0	2.9	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|296241935|ref|YP_003649422.1|	-	4.3e-09	36.3	0.2	1.8e-06	27.8	0.1	2.6	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|296241935|ref|YP_003649422.1|	-	1.9e-07	31.4	0.1	0.0015	18.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|296241935|ref|YP_003649422.1|	-	6.6e-07	29.9	1.5	8.7e-06	26.2	0.6	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|296241935|ref|YP_003649422.1|	-	2.6e-05	24.3	0.2	0.00021	21.3	0.1	2.6	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|296241935|ref|YP_003649422.1|	-	0.00029	21.4	0.0	0.0008	20.0	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
TFIID-31kDa	PF02291.15	gi|296241935|ref|YP_003649422.1|	-	0.00031	20.8	0.4	0.23	11.5	0.1	2.8	2	1	0	3	3	3	1	Transcription	initiation	factor	IID,	31kD	subunit
AAA_25	PF13481.6	gi|296241935|ref|YP_003649422.1|	-	0.00038	20.1	0.1	0.00099	18.7	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_7	PF12775.7	gi|296241935|ref|YP_003649422.1|	-	0.00048	19.7	0.0	0.0049	16.4	0.0	2.1	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
Mg_chelatase	PF01078.21	gi|296241935|ref|YP_003649422.1|	-	0.0006	19.2	0.3	0.004	16.6	0.1	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.17	gi|296241935|ref|YP_003649422.1|	-	0.00067	19.4	0.0	0.0016	18.2	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_19	PF13245.6	gi|296241935|ref|YP_003649422.1|	-	0.0012	19.2	1.4	0.036	14.4	1.4	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|296241935|ref|YP_003649422.1|	-	0.0017	18.6	0.1	0.0067	16.7	0.1	2.1	2	0	0	2	2	1	1	AAA	domain
AAA_33	PF13671.6	gi|296241935|ref|YP_003649422.1|	-	0.0044	17.2	0.0	0.012	15.7	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|296241935|ref|YP_003649422.1|	-	0.012	15.4	0.4	0.3	10.8	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|296241935|ref|YP_003649422.1|	-	0.013	15.5	0.0	0.031	14.2	0.0	1.7	1	0	0	1	1	1	0	NACHT	domain
PhoH	PF02562.16	gi|296241935|ref|YP_003649422.1|	-	0.014	14.9	0.1	0.033	13.6	0.1	1.6	1	0	0	1	1	1	0	PhoH-like	protein
Sigma54_activat	PF00158.26	gi|296241935|ref|YP_003649422.1|	-	0.014	15.1	0.0	0.17	11.6	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|296241935|ref|YP_003649422.1|	-	0.023	14.5	0.0	0.05	13.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|296241935|ref|YP_003649422.1|	-	0.023	14.0	0.0	0.064	12.5	0.0	1.7	1	0	0	1	1	1	0	Zeta	toxin
ATPase	PF06745.13	gi|296241935|ref|YP_003649422.1|	-	0.028	13.8	0.3	0.13	11.6	0.2	2.0	1	1	1	2	2	2	0	KaiC
ABC_tran	PF00005.27	gi|296241935|ref|YP_003649422.1|	-	0.029	14.9	0.0	0.15	12.6	0.0	1.7	1	1	0	1	1	1	0	ABC	transporter
DnaB_C	PF03796.15	gi|296241935|ref|YP_003649422.1|	-	0.041	13.2	0.0	0.13	11.6	0.0	1.8	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
RNA_helicase	PF00910.22	gi|296241935|ref|YP_003649422.1|	-	0.042	14.2	0.0	0.085	13.2	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
TsaE	PF02367.17	gi|296241935|ref|YP_003649422.1|	-	0.043	13.8	0.0	0.099	12.6	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_2	PF07724.14	gi|296241935|ref|YP_003649422.1|	-	0.06	13.5	0.0	0.17	12.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
AAA_14	PF13173.6	gi|296241935|ref|YP_003649422.1|	-	0.061	13.4	0.0	2.2	8.3	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
ResIII	PF04851.15	gi|296241935|ref|YP_003649422.1|	-	0.07	13.1	0.1	0.63	10.0	0.0	2.1	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Phage_NinH	PF06322.11	gi|296241935|ref|YP_003649422.1|	-	0.076	12.9	0.1	0.36	10.8	0.0	2.1	2	0	0	2	2	1	0	Phage	NinH	protein
DUF2075	PF09848.9	gi|296241935|ref|YP_003649422.1|	-	0.091	12.0	0.0	0.2	10.8	0.0	1.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_17	PF13207.6	gi|296241935|ref|YP_003649422.1|	-	0.11	12.9	1.5	0.39	11.2	0.0	2.7	4	0	0	4	4	2	0	AAA	domain
NB-ARC	PF00931.22	gi|296241935|ref|YP_003649422.1|	-	0.14	11.3	0.3	1.8	7.7	0.0	2.1	1	1	1	2	2	2	0	NB-ARC	domain
Pyridoxal_deC	PF00282.19	gi|296241936|ref|YP_003649423.1|	-	9.6e-28	96.9	0.0	3.5e-27	95.1	0.0	1.7	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.19	gi|296241936|ref|YP_003649423.1|	-	4.5e-15	55.5	0.0	9.9e-14	51.1	0.0	2.1	2	0	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|296241936|ref|YP_003649423.1|	-	6.9e-13	48.5	0.0	1.3e-12	47.6	0.0	1.4	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|296241936|ref|YP_003649423.1|	-	2.6e-08	33.4	0.0	1.9e-06	27.3	0.0	2.1	2	0	0	2	2	2	2	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|296241936|ref|YP_003649423.1|	-	5e-05	22.8	0.0	7.5e-05	22.2	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
OKR_DC_1	PF01276.20	gi|296241936|ref|YP_003649423.1|	-	0.002	17.0	0.0	0.0035	16.1	0.0	1.4	1	1	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	major	domain
Cys_Met_Meta_PP	PF01053.20	gi|296241936|ref|YP_003649423.1|	-	0.025	13.1	0.0	0.036	12.6	0.0	1.1	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
SepSecS	PF05889.13	gi|296241936|ref|YP_003649423.1|	-	0.069	11.8	0.0	0.11	11.1	0.0	1.3	1	0	0	1	1	1	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
RIO1	PF01163.22	gi|296241937|ref|YP_003649424.1|	-	4e-43	147.2	0.1	7.4e-43	146.3	0.0	1.4	2	0	0	2	2	2	1	RIO1	family
Rio2_N	PF09202.11	gi|296241937|ref|YP_003649424.1|	-	1.8e-22	79.4	2.3	3.6e-22	78.4	2.3	1.5	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.23	gi|296241937|ref|YP_003649424.1|	-	1.5e-05	25.1	1.7	0.0013	18.7	0.1	2.3	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|296241937|ref|YP_003649424.1|	-	0.00086	18.7	0.0	0.0042	16.5	0.0	1.9	1	1	0	1	1	1	1	Protein	kinase	domain
Pkinase_fungal	PF17667.1	gi|296241937|ref|YP_003649424.1|	-	0.0041	16.0	0.0	0.0052	15.6	0.0	1.2	1	0	0	1	1	1	1	Fungal	protein	kinase
Choline_kinase	PF01633.20	gi|296241937|ref|YP_003649424.1|	-	0.072	12.7	0.0	0.23	11.0	0.0	1.8	1	1	1	2	2	2	0	Choline/ethanolamine	kinase
DUF460	PF04312.13	gi|296241938|ref|YP_003649425.1|	-	4.2e-45	152.9	0.7	1.6e-44	151.0	0.2	2.3	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF460)
Rota_NSP3	PF01665.16	gi|296241938|ref|YP_003649425.1|	-	0.013	14.7	10.7	41	3.2	10.7	3.6	1	1	0	1	1	1	0	Rotavirus	non-structural	protein	NSP3
Tex_YqgF	PF16921.5	gi|296241938|ref|YP_003649425.1|	-	0.027	14.9	0.0	4.5	7.7	0.0	3.2	3	0	0	3	3	3	0	Tex	protein	YqgF-like	domain
Spc29	PF17082.5	gi|296241938|ref|YP_003649425.1|	-	0.073	12.9	2.9	0.26	11.1	2.9	2.0	1	0	0	1	1	1	0	Spindle	Pole	Component	29
acVLRF1	PF18859.1	gi|296241938|ref|YP_003649425.1|	-	0.14	12.4	0.0	0.34	11.2	0.0	1.6	1	0	0	1	1	1	0	Actinobacteria/chloroflexi	VLRF1	release	factor
Tropomyosin_1	PF12718.7	gi|296241938|ref|YP_003649425.1|	-	0.17	12.0	8.5	0.41	10.8	8.5	1.6	1	0	0	1	1	1	0	Tropomyosin	like
LMBR1	PF04791.16	gi|296241938|ref|YP_003649425.1|	-	0.17	10.7	2.2	0.26	10.1	2.2	1.2	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
P-mevalo_kinase	PF04275.14	gi|296241938|ref|YP_003649425.1|	-	0.24	11.4	4.8	0.12	12.3	0.9	2.5	3	0	0	3	3	3	0	Phosphomevalonate	kinase
FadA	PF09403.10	gi|296241938|ref|YP_003649425.1|	-	0.61	10.6	6.2	2.9	8.4	6.2	2.2	1	0	0	1	1	1	0	Adhesion	protein	FadA
DUF724	PF05266.14	gi|296241938|ref|YP_003649425.1|	-	1.7	8.4	8.3	0.6	9.9	3.4	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF724)
SlyX	PF04102.12	gi|296241938|ref|YP_003649425.1|	-	2.3	8.9	5.2	17	6.1	1.2	3.3	2	1	1	3	3	3	0	SlyX
Tropomyosin	PF00261.20	gi|296241938|ref|YP_003649425.1|	-	2.5	7.4	17.4	0.14	11.5	11.6	1.8	2	0	0	2	2	2	0	Tropomyosin
DUF641	PF04859.12	gi|296241938|ref|YP_003649425.1|	-	4.9	7.5	8.4	4.4	7.7	4.6	2.8	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
Prefoldin	PF02996.17	gi|296241938|ref|YP_003649425.1|	-	6.7	6.6	10.2	15	5.5	1.7	3.5	4	0	0	4	4	4	0	Prefoldin	subunit
PspA_IM30	PF04012.12	gi|296241938|ref|YP_003649425.1|	-	8.6	5.9	11.1	0.51	9.9	1.4	2.5	2	1	1	3	3	3	0	PspA/IM30	family
AdoMet_Synthase	PF01941.19	gi|296241939|ref|YP_003649426.1|	-	1e-172	574.4	0.3	1.2e-172	574.2	0.3	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
FbpA	PF05833.11	gi|296241940|ref|YP_003649427.1|	-	5.7e-37	127.6	1.2	8e-37	127.1	1.2	1.2	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|296241940|ref|YP_003649427.1|	-	1.4e-19	70.7	0.0	3.4e-19	69.5	0.0	1.7	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
NFACT-R_2	PF18297.1	gi|296241940|ref|YP_003649427.1|	-	6.2e-05	23.1	0.0	0.00029	21.0	0.0	2.1	2	0	0	2	2	1	1	NFACT	protein	RNA	binding	domain
DUF1664	PF07889.12	gi|296241940|ref|YP_003649427.1|	-	0.0045	17.0	2.1	0.078	13.0	0.1	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1664)
Nup54	PF13874.6	gi|296241940|ref|YP_003649427.1|	-	0.066	13.3	0.4	0.16	12.1	0.1	1.8	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
Snapin_Pallidin	PF14712.6	gi|296241940|ref|YP_003649427.1|	-	0.099	13.1	4.6	0.37	11.2	0.4	2.5	2	0	0	2	2	2	0	Snapin/Pallidin
PAS_8	PF13188.7	gi|296241940|ref|YP_003649427.1|	-	0.12	12.4	0.0	0.27	11.3	0.0	1.6	1	0	0	1	1	1	0	PAS	domain
SlyX	PF04102.12	gi|296241940|ref|YP_003649427.1|	-	0.15	12.7	1.2	0.22	12.1	0.1	1.8	2	0	0	2	2	1	0	SlyX
Tom22	PF04281.13	gi|296241940|ref|YP_003649427.1|	-	0.18	11.6	0.6	1.2	8.9	0.2	2.3	2	0	0	2	2	2	0	Mitochondrial	import	receptor	subunit	Tom22
Spc7	PF08317.11	gi|296241940|ref|YP_003649427.1|	-	0.19	10.6	6.4	0.087	11.7	0.4	2.7	3	0	0	3	3	3	0	Spc7	kinetochore	protein
ALIX_LYPXL_bnd	PF13949.6	gi|296241940|ref|YP_003649427.1|	-	0.23	10.7	4.0	0.073	12.4	0.5	1.8	2	0	0	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
KxDL	PF10241.9	gi|296241940|ref|YP_003649427.1|	-	0.39	11.0	3.8	0.14	12.5	0.5	1.8	2	0	0	2	2	2	0	Uncharacterized	conserved	protein
TMIE	PF16038.5	gi|296241940|ref|YP_003649427.1|	-	0.56	10.1	2.3	1.1	9.1	0.6	2.1	2	0	0	2	2	2	0	TMIE	protein
FliS	PF02561.14	gi|296241940|ref|YP_003649427.1|	-	0.99	9.7	3.3	0.58	10.4	0.5	2.1	2	0	0	2	2	2	0	Flagellar	protein	FliS
APG6_N	PF17675.1	gi|296241940|ref|YP_003649427.1|	-	7	7.2	6.3	36	4.9	0.2	2.6	3	0	0	3	3	2	0	Apg6	coiled-coil	region
RNA_Me_trans	PF04252.13	gi|296241942|ref|YP_003649429.1|	-	1.2e-40	139.2	0.0	1.5e-40	138.9	0.0	1.0	1	0	0	1	1	1	1	Predicted	SAM-dependent	RNA	methyltransferase
NucS	PF01939.16	gi|296241943|ref|YP_003649430.1|	-	1.7e-55	187.8	0.0	2.2e-55	187.5	0.0	1.0	1	0	0	1	1	1	1	Endonuclease	NucS
DUF4263	PF14082.6	gi|296241943|ref|YP_003649430.1|	-	0.12	12.6	0.0	0.26	11.5	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4263)
Methyltransf_11	PF08241.12	gi|296241944|ref|YP_003649431.1|	-	1.1e-15	58.0	0.0	1.6e-15	57.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296241944|ref|YP_003649431.1|	-	7.9e-13	48.9	0.0	1.1e-12	48.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|296241944|ref|YP_003649431.1|	-	1.8e-08	35.0	0.0	2.8e-08	34.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|296241944|ref|YP_003649431.1|	-	1.8e-08	34.0	0.0	2e-08	33.8	0.0	1.0	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|296241944|ref|YP_003649431.1|	-	1.8e-05	24.6	0.0	2.6e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|296241944|ref|YP_003649431.1|	-	0.00011	22.1	0.0	0.00013	21.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|296241944|ref|YP_003649431.1|	-	0.013	14.8	0.0	0.013	14.8	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
MetW	PF07021.12	gi|296241944|ref|YP_003649431.1|	-	0.052	13.1	0.0	0.13	11.8	0.0	1.6	1	1	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_32	PF13679.6	gi|296241944|ref|YP_003649431.1|	-	0.14	12.1	0.0	0.23	11.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.14	gi|296241944|ref|YP_003649431.1|	-	0.19	11.3	0.0	0.31	10.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
LSM	PF01423.22	gi|296241945|ref|YP_003649432.1|	-	4.3e-18	64.8	0.3	5e-18	64.6	0.3	1.1	1	0	0	1	1	1	1	LSM	domain
LSM14	PF12701.7	gi|296241945|ref|YP_003649432.1|	-	0.015	15.4	0.6	0.024	14.7	0.6	1.3	1	0	0	1	1	1	0	Scd6-like	Sm	domain
Bromodomain	PF00439.25	gi|296241945|ref|YP_003649432.1|	-	0.069	13.2	0.0	0.084	13.0	0.0	1.3	1	0	0	1	1	1	0	Bromodomain
CBS	PF00571.28	gi|296241946|ref|YP_003649433.1|	-	2.1e-42	143.3	15.2	1.4e-13	51.1	0.3	4.2	4	0	0	4	4	4	4	CBS	domain
UvrA_inter	PF17760.1	gi|296241946|ref|YP_003649433.1|	-	0.1	12.7	0.4	1.5	8.9	0.0	2.3	2	0	0	2	2	2	0	UvrA	interaction	domain
Succ_DH_flav_C	PF02910.20	gi|296241946|ref|YP_003649433.1|	-	0.14	12.1	0.9	24	4.9	0.0	2.8	3	0	0	3	3	3	0	Fumarate	reductase	flavoprotein	C-term
CBS	PF00571.28	gi|296241947|ref|YP_003649434.1|	-	2e-25	89.0	0.2	1.6e-06	28.5	0.0	4.2	4	0	0	4	4	4	4	CBS	domain
Mut7-C	PF01927.16	gi|296241948|ref|YP_003649435.1|	-	1e-44	152.2	0.1	1.2e-44	152.0	0.1	1.1	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
DUF5615	PF18480.1	gi|296241948|ref|YP_003649435.1|	-	4.8e-06	26.2	0.0	8.5e-06	25.4	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
PIN_9	PF18477.1	gi|296241948|ref|YP_003649435.1|	-	0.0028	18.0	0.0	0.0048	17.2	0.0	1.4	1	0	0	1	1	1	1	PIN	like	domain
EntA_Immun	PF08951.10	gi|296241948|ref|YP_003649435.1|	-	0.082	13.3	0.1	7.3	7.0	0.0	2.4	2	0	0	2	2	2	0	Enterocin	A	Immunity
AMMECR1	PF01871.17	gi|296241949|ref|YP_003649436.1|	-	1.2e-46	158.3	0.0	1.4e-46	158.1	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
NAD_synthase	PF02540.17	gi|296241950|ref|YP_003649437.1|	-	3.5e-72	242.4	0.0	4.1e-72	242.2	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|296241950|ref|YP_003649437.1|	-	1.4e-05	24.1	0.0	0.00072	18.4	0.0	2.2	2	0	0	2	2	2	1	tRNA	methyl	transferase
ATP_bind_3	PF01171.20	gi|296241950|ref|YP_003649437.1|	-	0.0027	17.5	0.0	0.0039	17.0	0.0	1.2	1	0	0	1	1	1	1	PP-loop	family
Asn_synthase	PF00733.21	gi|296241950|ref|YP_003649437.1|	-	0.0087	15.8	0.0	0.016	14.9	0.0	1.4	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.13	gi|296241950|ref|YP_003649437.1|	-	0.029	13.9	0.0	0.052	13.0	0.0	1.4	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
CH	PF00307.31	gi|296241950|ref|YP_003649437.1|	-	0.087	13.0	0.0	0.15	12.3	0.0	1.3	1	0	0	1	1	1	0	Calponin	homology	(CH)	domain
Glucosamine_iso	PF01182.20	gi|296241950|ref|YP_003649437.1|	-	0.15	11.9	0.0	0.22	11.4	0.0	1.2	1	0	0	1	1	1	0	Glucosamine-6-phosphate	isomerases/6-phosphogluconolactonase
Histidinol_dh	PF00815.20	gi|296241951|ref|YP_003649438.1|	-	0.067	12.2	0.0	0.076	12.0	0.0	1.1	1	0	0	1	1	1	0	Histidinol	dehydrogenase
Pirin_C_2	PF17954.1	gi|296241951|ref|YP_003649438.1|	-	0.086	13.0	0.1	4.5	7.5	0.0	2.4	2	0	0	2	2	2	0	Quercetinase	C-terminal	cupin	domain
Metallophos_2	PF12850.7	gi|296241952|ref|YP_003649439.1|	-	5.3e-15	56.0	0.0	1.2e-14	54.8	0.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|296241952|ref|YP_003649439.1|	-	6.8e-13	49.6	0.2	9.7e-13	49.1	0.2	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|296241952|ref|YP_003649439.1|	-	9.9e-07	28.3	0.3	4.2e-05	23.0	0.0	2.7	1	1	1	2	2	2	1	Metallophosphoesterase,	calcineurin	superfamily
DUF5622	PF18533.1	gi|296241953|ref|YP_003649440.1|	-	3.2e-27	94.4	1.6	3.6e-27	94.3	1.6	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5622)
HAS-barrel	PF09378.10	gi|296241953|ref|YP_003649440.1|	-	0.053	13.7	0.3	0.077	13.2	0.3	1.3	1	1	0	1	1	1	0	HAS	barrel	domain
GtrA	PF04138.14	gi|296241954|ref|YP_003649441.1|	-	5e-16	59.0	10.5	6.9e-16	58.5	10.5	1.2	1	0	0	1	1	1	1	GtrA-like	protein
UDG	PF03167.19	gi|296241955|ref|YP_003649442.1|	-	5.4e-42	143.4	0.0	7.1e-42	143.0	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
Lon_C	PF05362.13	gi|296241956|ref|YP_003649443.1|	-	0.076	12.5	0.0	0.18	11.3	0.0	1.5	1	0	0	1	1	1	0	Lon	protease	(S16)	C-terminal	proteolytic	domain
UL97	PF06734.12	gi|296241956|ref|YP_003649443.1|	-	0.12	12.2	0.1	0.23	11.3	0.1	1.4	1	0	0	1	1	1	0	UL97
DNA_ligase_A_M	PF01068.21	gi|296241957|ref|YP_003649444.1|	-	4.3e-61	206.1	0.7	6.6e-61	205.5	0.7	1.3	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.14	gi|296241957|ref|YP_003649444.1|	-	2.7e-39	135.3	0.5	4.9e-39	134.4	0.5	1.5	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.15	gi|296241957|ref|YP_003649444.1|	-	8e-27	93.8	0.0	1.9e-26	92.5	0.0	1.7	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	C	terminal	region
RNA_ligase	PF09414.10	gi|296241957|ref|YP_003649444.1|	-	6.8e-05	23.2	1.2	0.00012	22.4	1.2	1.4	1	0	0	1	1	1	1	RNA	ligase
DNA_ligase_OB_2	PF14743.6	gi|296241957|ref|YP_003649444.1|	-	0.045	13.8	0.1	2.5	8.2	0.0	2.7	2	0	0	2	2	2	0	DNA	ligase	OB-like	domain
ATP_bind_1	PF03029.17	gi|296241958|ref|YP_003649445.1|	-	8.9e-44	150.1	0.0	1e-43	149.9	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
SRP54	PF00448.22	gi|296241958|ref|YP_003649445.1|	-	0.0092	15.6	0.0	0.4	10.3	0.1	2.2	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
CbiA	PF01656.23	gi|296241958|ref|YP_003649445.1|	-	0.03	14.4	0.0	0.033	14.2	0.0	1.3	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_24	PF13479.6	gi|296241958|ref|YP_003649445.1|	-	0.081	12.6	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|296241958|ref|YP_003649445.1|	-	0.092	13.1	0.0	0.19	12.1	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
cobW	PF02492.19	gi|296241958|ref|YP_003649445.1|	-	0.094	12.3	0.3	3.6	7.1	0.2	2.3	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
SRPRB	PF09439.10	gi|296241958|ref|YP_003649445.1|	-	0.11	11.9	0.3	12	5.3	0.0	2.7	2	2	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
AAA_22	PF13401.6	gi|296241958|ref|YP_003649445.1|	-	0.15	12.4	0.0	0.26	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2070	PF09843.9	gi|296241960|ref|YP_003649447.1|	-	1.6e-104	350.2	2.0	1.8e-104	350.1	2.0	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
TBP	PF00352.21	gi|296241961|ref|YP_003649448.1|	-	3.8e-55	183.8	0.1	1.9e-27	95.0	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|296241961|ref|YP_003649448.1|	-	1.4e-07	31.5	0.0	0.011	15.8	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Spore_YhaL	PF14147.6	gi|296241961|ref|YP_003649448.1|	-	0.029	14.1	1.4	0.46	10.2	0.1	2.9	3	0	0	3	3	3	0	Sporulation	protein	YhaL
DUF2334	PF10096.9	gi|296241962|ref|YP_003649449.1|	-	0.054	13.1	0.0	0.079	12.6	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Cys_Met_Meta_PP	PF01053.20	gi|296241962|ref|YP_003649449.1|	-	0.072	11.6	0.0	0.081	11.4	0.0	1.1	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Peptidase_M48	PF01435.18	gi|296241963|ref|YP_003649450.1|	-	5.2e-41	140.6	0.0	3.5e-40	137.9	0.0	2.3	2	1	0	2	2	2	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|296241963|ref|YP_003649450.1|	-	0.00017	20.9	0.5	0.00043	19.6	0.5	1.7	1	1	0	1	1	1	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|296241964|ref|YP_003649451.1|	-	0.002	18.0	0.0	0.0025	17.7	0.0	1.2	1	0	0	1	1	1	1	SprT-like	family
Peptidase_M56	PF05569.11	gi|296241964|ref|YP_003649451.1|	-	0.14	11.3	0.2	0.2	10.8	0.2	1.1	1	0	0	1	1	1	0	BlaR1	peptidase	M56
Metallophos	PF00149.28	gi|296241965|ref|YP_003649452.1|	-	5.2e-07	30.4	0.4	1.3e-06	29.1	0.4	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|296241965|ref|YP_003649452.1|	-	2.3e-06	27.9	0.0	3.6e-06	27.3	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Hydrolase	PF00702.26	gi|296241965|ref|YP_003649452.1|	-	0.15	12.3	0.0	0.22	11.8	0.0	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
DUF505	PF04458.12	gi|296241968|ref|YP_003649455.1|	-	0.037	12.4	0.0	0.041	12.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
DUF4777	PF16007.5	gi|296241968|ref|YP_003649455.1|	-	0.079	13.2	0.0	0.15	12.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4777)
TPP_enzyme_C	PF02775.21	gi|296241969|ref|YP_003649456.1|	-	1.6e-18	67.0	0.0	4.6e-18	65.5	0.1	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|296241969|ref|YP_003649456.1|	-	3.9e-13	49.7	0.0	6.3e-13	49.0	0.0	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.27	gi|296241969|ref|YP_003649456.1|	-	1.1e-11	44.0	14.9	6.5e-08	32.1	3.6	2.9	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|296241969|ref|YP_003649456.1|	-	2.4e-09	36.7	12.3	9.7e-05	22.2	3.6	2.9	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|296241969|ref|YP_003649456.1|	-	1.2e-07	31.4	18.4	5.1e-06	26.3	2.9	2.9	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|296241969|ref|YP_003649456.1|	-	8.9e-07	28.9	9.5	3.3e-06	27.1	9.5	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|296241969|ref|YP_003649456.1|	-	1.1e-06	28.7	7.2	2.3e-06	27.7	7.2	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|296241969|ref|YP_003649456.1|	-	1.6e-06	28.6	9.4	4.3e-05	24.0	9.6	2.5	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|296241969|ref|YP_003649456.1|	-	6.8e-06	26.1	10.2	0.0014	18.7	11.4	2.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|296241969|ref|YP_003649456.1|	-	0.00037	21.4	6.6	0.0049	17.8	1.1	2.6	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|296241969|ref|YP_003649456.1|	-	0.0014	19.0	10.6	0.025	15.0	2.0	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|296241969|ref|YP_003649456.1|	-	0.033	14.6	7.2	0.64	10.5	0.9	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
PFOR_II	PF17147.4	gi|296241969|ref|YP_003649456.1|	-	0.035	14.4	0.1	0.077	13.3	0.1	1.5	1	0	0	1	1	1	0	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|296241969|ref|YP_003649456.1|	-	0.05	13.5	0.1	0.2	11.6	0.1	2.0	1	0	0	1	1	1	0	Transketolase,	C-terminal	domain
IF-2B	PF01008.17	gi|296241969|ref|YP_003649456.1|	-	0.12	11.6	0.0	0.24	10.6	0.0	1.4	1	0	0	1	1	1	0	Initiation	factor	2	subunit	family
Fer4_13	PF13370.6	gi|296241969|ref|YP_003649456.1|	-	0.13	12.9	9.4	2.8	8.6	1.1	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|296241969|ref|YP_003649456.1|	-	0.28	11.7	9.8	1.4	9.5	1.9	2.5	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|296241969|ref|YP_003649456.1|	-	0.52	11.2	4.0	5.3	8.0	0.8	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|296241969|ref|YP_003649456.1|	-	0.61	10.9	10.3	1.2	10.0	0.7	2.8	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
POR	PF01558.18	gi|296241970|ref|YP_003649457.1|	-	8.6e-32	110.6	0.1	1e-31	110.4	0.1	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
FapA	PF03961.13	gi|296241972|ref|YP_003649459.1|	-	0.2	10.2	0.8	0.35	9.4	0.8	1.4	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
Q_salvage	PF10343.9	gi|296241973|ref|YP_003649460.1|	-	0.00027	20.6	0.0	0.0011	18.6	0.0	1.8	1	1	1	2	2	2	1	Potential	Queuosine,	Q,	salvage	protein	family
Ribosomal_S16	PF00886.19	gi|296241973|ref|YP_003649460.1|	-	0.062	13.4	0.0	0.24	11.5	0.0	2.2	1	1	0	1	1	1	0	Ribosomal	protein	S16
YozD	PF14162.6	gi|296241974|ref|YP_003649461.1|	-	0.066	13.5	0.0	0.17	12.2	0.0	1.7	1	0	0	1	1	1	0	YozD-like	protein
UPF0058	PF01893.16	gi|296241974|ref|YP_003649461.1|	-	0.15	12.4	0.0	0.16	12.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0058
Methyltransf_25	PF13649.6	gi|296241975|ref|YP_003649462.1|	-	4.1e-07	30.6	0.0	7.3e-07	29.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|296241975|ref|YP_003649462.1|	-	6.7e-06	25.9	0.0	1.1e-05	25.2	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
MTS	PF05175.14	gi|296241975|ref|YP_003649462.1|	-	7.9e-05	22.3	0.0	0.00013	21.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|296241975|ref|YP_003649462.1|	-	0.00013	22.6	0.0	0.00078	20.1	0.0	2.3	2	1	0	2	2	2	1	Methyltransferase	domain
Spermine_synth	PF01564.17	gi|296241975|ref|YP_003649462.1|	-	0.00034	20.1	0.0	0.00049	19.6	0.0	1.3	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
Ubie_methyltran	PF01209.18	gi|296241975|ref|YP_003649462.1|	-	0.00054	19.4	0.0	0.015	14.7	0.0	2.5	1	1	1	2	2	2	1	ubiE/COQ5	methyltransferase	family
PrmA	PF06325.13	gi|296241975|ref|YP_003649462.1|	-	0.00075	19.0	0.0	0.0011	18.4	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.6	gi|296241975|ref|YP_003649462.1|	-	0.017	14.9	0.0	0.047	13.5	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|296241975|ref|YP_003649462.1|	-	0.03	14.0	0.0	0.059	13.0	0.0	1.4	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
Met_10	PF02475.16	gi|296241975|ref|YP_003649462.1|	-	0.036	13.8	0.0	0.068	12.9	0.0	1.4	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_18	PF12847.7	gi|296241975|ref|YP_003649462.1|	-	0.04	13.8	0.0	0.063	13.2	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_30	PF05430.11	gi|296241975|ref|YP_003649462.1|	-	0.069	13.0	0.0	0.19	11.6	0.0	1.7	1	1	0	1	1	1	0	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_8	PF05148.15	gi|296241975|ref|YP_003649462.1|	-	0.096	12.5	0.0	0.22	11.3	0.0	1.5	2	0	0	2	2	2	0	Hypothetical	methyltransferase
RHH_3	PF12651.7	gi|296241976|ref|YP_003649463.1|	-	0.00093	19.1	0.0	0.0016	18.3	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
RHH_1	PF01402.21	gi|296241976|ref|YP_003649463.1|	-	0.044	13.7	0.2	0.1	12.5	0.0	1.7	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
ABC-3	PF00950.17	gi|296241977|ref|YP_003649464.1|	-	2.2e-22	79.8	26.2	2.8e-22	79.5	26.2	1.1	1	0	0	1	1	1	1	ABC	3	transport	family
ZnuA	PF01297.17	gi|296241978|ref|YP_003649465.1|	-	2.4e-09	37.0	0.0	3.7e-09	36.4	0.0	1.3	1	1	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
EpuA	PF11772.8	gi|296241978|ref|YP_003649465.1|	-	0.06	13.0	0.5	0.06	13.0	0.5	1.7	2	0	0	2	2	2	0	DNA-directed	RNA	polymerase	subunit	beta
ABC_tran	PF00005.27	gi|296241979|ref|YP_003649466.1|	-	1.6e-26	93.4	0.0	2.1e-26	93.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296241979|ref|YP_003649466.1|	-	2.2e-09	37.5	0.3	7.9e-05	22.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|296241979|ref|YP_003649466.1|	-	2.8e-05	23.7	0.2	0.00014	21.4	0.2	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|296241979|ref|YP_003649466.1|	-	0.00025	21.6	1.3	0.00039	21.0	1.3	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|296241979|ref|YP_003649466.1|	-	0.0073	16.1	0.1	1.2	8.7	0.2	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|296241979|ref|YP_003649466.1|	-	0.01	15.5	0.1	0.02	14.6	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.6	gi|296241979|ref|YP_003649466.1|	-	0.017	15.3	0.0	0.84	9.9	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.6	gi|296241979|ref|YP_003649466.1|	-	0.071	13.5	0.0	0.16	12.4	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|296241979|ref|YP_003649466.1|	-	0.13	12.6	0.1	0.31	11.3	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|296241979|ref|YP_003649466.1|	-	0.13	12.4	0.0	0.29	11.3	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|296241979|ref|YP_003649466.1|	-	0.14	11.7	0.0	0.24	10.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
CbiA	PF01656.23	gi|296241979|ref|YP_003649466.1|	-	0.17	11.9	0.0	0.24	11.5	0.0	1.2	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Zeta_toxin	PF06414.12	gi|296241979|ref|YP_003649466.1|	-	0.2	10.9	0.1	0.28	10.4	0.1	1.2	1	0	0	1	1	1	0	Zeta	toxin
T2SSE	PF00437.20	gi|296241979|ref|YP_003649466.1|	-	0.21	10.6	0.1	0.29	10.1	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
GARS_A	PF01071.19	gi|296241980|ref|YP_003649467.1|	-	0.029	14.2	0.0	0.04	13.7	0.0	1.2	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Ald_Xan_dh_C2	PF02738.18	gi|296241981|ref|YP_003649468.1|	-	3.6e-177	590.2	0.9	4.3e-177	589.9	0.9	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|296241981|ref|YP_003649468.1|	-	3.1e-27	95.1	0.0	6.4e-27	94.1	0.0	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Fer2_2	PF01799.20	gi|296241982|ref|YP_003649469.1|	-	2.8e-25	88.1	0.1	4.7e-25	87.4	0.1	1.4	1	0	0	1	1	1	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|296241982|ref|YP_003649469.1|	-	1.6e-08	34.4	0.6	4.9e-08	32.8	0.2	2.0	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|296241982|ref|YP_003649469.1|	-	5e-05	23.3	0.1	9e-05	22.5	0.1	1.6	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|296241982|ref|YP_003649469.1|	-	0.0023	17.9	0.5	0.035	14.1	0.5	2.5	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DUF5342	PF17277.2	gi|296241982|ref|YP_003649469.1|	-	0.056	13.8	0.5	0.11	12.9	0.5	1.5	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5342)
S4	PF01479.25	gi|296241982|ref|YP_003649469.1|	-	0.21	11.3	0.8	0.88	9.3	0.0	2.4	3	0	0	3	3	3	0	S4	domain
FAD_binding_5	PF00941.21	gi|296241983|ref|YP_003649470.1|	-	8.7e-26	90.7	0.0	1.2e-25	90.3	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|296241983|ref|YP_003649470.1|	-	2.2e-14	53.4	0.0	8.6e-14	51.6	0.0	1.8	1	1	1	2	2	2	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
Lip_prot_lig_C	PF10437.9	gi|296241983|ref|YP_003649470.1|	-	0.042	13.8	0.0	0.13	12.3	0.0	1.9	1	0	0	1	1	1	0	Bacterial	lipoate	protein	ligase	C-terminus
PALP	PF00291.25	gi|296241984|ref|YP_003649471.1|	-	9.6e-70	235.3	0.0	1.1e-69	235.1	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ABM	PF03992.16	gi|296241984|ref|YP_003649471.1|	-	0.13	12.4	0.0	0.25	11.5	0.0	1.4	1	0	0	1	1	1	0	Antibiotic	biosynthesis	monooxygenase
MFS_1	PF07690.16	gi|296241985|ref|YP_003649472.1|	-	1.7e-13	50.2	23.9	1.4e-10	40.7	9.9	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
RHD3	PF05879.12	gi|296241985|ref|YP_003649472.1|	-	0.0081	14.4	1.7	0.011	14.0	1.7	1.1	1	0	0	1	1	1	1	Root	hair	defective	3	GTP-binding	protein	(RHD3)
FAM176	PF14851.6	gi|296241985|ref|YP_003649472.1|	-	0.21	11.2	0.5	0.37	10.4	0.5	1.3	1	0	0	1	1	1	0	FAM176	family
Herpes_LMP1	PF05297.11	gi|296241985|ref|YP_003649472.1|	-	2.4	7.3	4.2	5.5	6.1	4.2	1.6	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
Zip	PF02535.22	gi|296241985|ref|YP_003649472.1|	-	3.9	6.6	10.3	0.036	13.3	0.9	2.1	2	0	0	2	2	2	0	ZIP	Zinc	transporter
Nre_N	PF04894.12	gi|296241986|ref|YP_003649473.1|	-	1.8e-105	352.6	0.0	2.2e-105	352.3	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|296241986|ref|YP_003649473.1|	-	1.8e-33	114.7	0.0	2.7e-33	114.2	0.0	1.3	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
Radical_SAM	PF04055.21	gi|296241987|ref|YP_003649474.1|	-	3.3e-12	47.1	0.0	4.4e-12	46.7	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF1848	PF08902.11	gi|296241987|ref|YP_003649474.1|	-	0.0013	18.5	4.2	1.1	8.9	0.0	2.4	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF1848)
zf-ribbon_3	PF13248.6	gi|296241988|ref|YP_003649475.1|	-	0.00092	18.5	2.2	0.84	9.1	0.6	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|296241988|ref|YP_003649475.1|	-	0.0012	19.1	1.3	0.024	14.9	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|296241988|ref|YP_003649475.1|	-	0.011	15.7	0.9	3.1	7.8	0.2	2.4	2	1	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|296241988|ref|YP_003649475.1|	-	0.012	15.1	3.3	0.94	9.0	0.1	2.5	3	0	0	3	3	3	0	TFIIB	zinc-binding
CpXC	PF14353.6	gi|296241988|ref|YP_003649475.1|	-	0.013	15.5	0.3	0.055	13.5	0.3	1.8	1	1	0	1	1	1	0	CpXC	protein
Ribosomal_S27	PF01599.19	gi|296241988|ref|YP_003649475.1|	-	0.014	15.6	0.7	0.26	11.5	0.0	2.3	2	0	0	2	2	2	0	Ribosomal	protein	S27a
TFIIS_C	PF01096.18	gi|296241988|ref|YP_003649475.1|	-	0.015	15.1	1.0	1.3	8.9	0.0	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
PhnA_Zn_Ribbon	PF08274.12	gi|296241988|ref|YP_003649475.1|	-	0.034	14.1	0.9	4.6	7.3	0.0	2.3	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Zn_Tnp_IS1595	PF12760.7	gi|296241988|ref|YP_003649475.1|	-	0.036	14.1	1.0	3.2	7.8	0.2	2.3	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Mu-like_Com	PF10122.9	gi|296241988|ref|YP_003649475.1|	-	0.048	13.1	1.2	2.6	7.5	0.0	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
zf-C2HC_2	PF13913.6	gi|296241988|ref|YP_003649475.1|	-	0.05	13.5	4.7	0.48	10.4	0.2	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zinc_ribbon_2	PF13240.6	gi|296241988|ref|YP_003649475.1|	-	0.072	12.8	8.1	1.8	8.4	2.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF35_N	PF12172.8	gi|296241988|ref|YP_003649475.1|	-	0.096	12.6	1.7	6.2	6.8	0.2	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-NADH-PPase	PF09297.11	gi|296241988|ref|YP_003649475.1|	-	0.18	11.5	2.8	8.3	6.2	0.2	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
UPF0547	PF10571.9	gi|296241988|ref|YP_003649475.1|	-	0.3	11.2	4.2	3.1	8.0	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF1610	PF07754.11	gi|296241988|ref|YP_003649475.1|	-	0.32	11.0	9.6	1.8	8.6	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-ACC	PF17848.1	gi|296241988|ref|YP_003649475.1|	-	0.35	11.0	3.3	16	5.7	0.1	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-RING_7	PF02591.15	gi|296241988|ref|YP_003649475.1|	-	0.37	11.0	3.5	11	6.3	0.1	2.2	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|296241988|ref|YP_003649475.1|	-	0.44	10.2	1.5	3.6	7.3	0.0	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-tcix	PF14952.6	gi|296241988|ref|YP_003649475.1|	-	0.61	9.7	5.2	1.9	8.2	0.9	2.3	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Zn-ribbon_8	PF09723.10	gi|296241988|ref|YP_003649475.1|	-	0.91	9.7	5.7	27	5.0	5.7	2.2	1	1	0	1	1	1	0	Zinc	ribbon	domain
Acetyltransf_1	PF00583.25	gi|296241989|ref|YP_003649476.1|	-	1.4e-18	67.2	0.0	1.7e-18	66.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|296241989|ref|YP_003649476.1|	-	6.3e-14	52.0	0.0	7.9e-14	51.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|296241989|ref|YP_003649476.1|	-	3.2e-13	49.9	0.0	4.7e-13	49.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|296241989|ref|YP_003649476.1|	-	2.8e-05	24.0	0.0	4.1e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|296241989|ref|YP_003649476.1|	-	0.00036	20.7	0.0	0.00046	20.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|296241989|ref|YP_003649476.1|	-	0.0006	19.9	0.0	0.007	16.4	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|296241989|ref|YP_003649476.1|	-	0.0058	16.7	0.0	0.01	15.9	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_6	PF13480.7	gi|296241989|ref|YP_003649476.1|	-	0.03	14.5	0.0	0.041	14.0	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|296241989|ref|YP_003649476.1|	-	0.041	13.4	0.1	0.046	13.2	0.1	1.3	1	0	0	1	1	1	0	Putative	acetyl-transferase
Acetyltransf_8	PF13523.6	gi|296241989|ref|YP_003649476.1|	-	0.048	13.3	0.0	0.069	12.8	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|296241989|ref|YP_003649476.1|	-	0.059	13.1	0.0	0.071	12.8	0.0	1.1	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
ADH_N	PF08240.12	gi|296241990|ref|YP_003649477.1|	-	1.7e-30	105.1	0.2	2.6e-30	104.5	0.2	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
Glu_dehyd_C	PF16912.5	gi|296241990|ref|YP_003649477.1|	-	1.8e-13	50.5	0.3	2.5e-13	50.0	0.3	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N	PF00107.26	gi|296241990|ref|YP_003649477.1|	-	1.7e-12	47.4	0.1	2.7e-12	46.8	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N_assoc	PF13823.6	gi|296241990|ref|YP_003649477.1|	-	0.0002	21.2	0.0	0.00045	20.1	0.0	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
ADH_zinc_N_2	PF13602.6	gi|296241990|ref|YP_003649477.1|	-	0.0076	17.3	0.0	0.023	15.7	0.0	1.8	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|296241990|ref|YP_003649477.1|	-	0.012	16.5	0.1	0.027	15.3	0.1	1.6	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Gp_dh_N	PF00044.24	gi|296241990|ref|YP_003649477.1|	-	0.038	14.3	1.1	1.5	9.2	0.2	2.5	1	1	1	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
BPD_transp_2	PF02653.16	gi|296241991|ref|YP_003649478.1|	-	6.6e-39	133.7	28.4	8.3e-39	133.4	28.4	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
LapA_dom	PF06305.11	gi|296241991|ref|YP_003649478.1|	-	0.82	9.5	6.0	2.4	8.0	0.0	3.4	3	0	0	3	3	3	0	Lipopolysaccharide	assembly	protein	A	domain
VIT1	PF01988.19	gi|296241991|ref|YP_003649478.1|	-	7.6	6.3	11.2	0.88	9.4	4.1	2.4	2	1	0	2	2	2	0	VIT	family
BPD_transp_2	PF02653.16	gi|296241992|ref|YP_003649479.1|	-	2.7e-32	112.0	34.1	2.7e-32	112.0	34.1	1.7	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|296241993|ref|YP_003649480.1|	-	1e-49	168.6	1.2	2.7e-30	105.7	0.0	2.8	3	0	0	3	3	3	2	ABC	transporter
AAA_21	PF13304.6	gi|296241993|ref|YP_003649480.1|	-	2e-06	27.8	5.0	0.025	14.4	0.1	2.6	2	1	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|296241993|ref|YP_003649480.1|	-	0.00022	21.8	0.0	0.00052	20.6	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
Diacid_rec	PF05651.13	gi|296241993|ref|YP_003649480.1|	-	0.028	14.1	0.3	0.082	12.6	0.3	1.8	1	0	0	1	1	1	0	Putative	sugar	diacid	recognition
AAA	PF00004.29	gi|296241993|ref|YP_003649480.1|	-	0.047	14.1	1.1	0.57	10.6	0.4	2.9	1	1	1	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|296241993|ref|YP_003649480.1|	-	0.057	13.8	0.0	0.32	11.4	0.0	2.2	3	0	0	3	3	3	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|296241993|ref|YP_003649480.1|	-	0.14	12.0	0.0	0.39	10.5	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|296241993|ref|YP_003649480.1|	-	0.14	11.6	1.4	13	5.2	0.0	3.0	3	1	0	3	3	3	0	RecF/RecN/SMC	N	terminal	domain
RNA_helicase	PF00910.22	gi|296241993|ref|YP_003649480.1|	-	0.15	12.5	0.0	0.46	10.9	0.0	1.9	1	0	0	1	1	1	0	RNA	helicase
AAA_22	PF13401.6	gi|296241993|ref|YP_003649480.1|	-	0.15	12.3	5.4	0.82	9.9	1.7	3.4	3	1	0	3	3	3	0	AAA	domain
Bmp	PF02608.14	gi|296241994|ref|YP_003649481.1|	-	2.2e-44	151.7	0.3	3.5e-44	151.0	0.2	1.3	1	1	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
T4SS_CagC	PF16943.5	gi|296241995|ref|YP_003649482.1|	-	0.052	13.7	0.6	0.058	13.6	0.6	1.1	1	0	0	1	1	1	0	Cag	pathogenicity	island,	type	IV	secretory	system
DUF2207	PF09972.9	gi|296241995|ref|YP_003649482.1|	-	0.79	8.4	4.1	0.88	8.3	4.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
UPF0242	PF06785.11	gi|296241995|ref|YP_003649482.1|	-	9.8	6.2	7.2	11	6.0	7.2	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
SSF	PF00474.17	gi|296241996|ref|YP_003649483.1|	-	4.1e-21	75.3	37.3	5.6e-21	74.9	37.3	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
PALP	PF00291.25	gi|296241997|ref|YP_003649484.1|	-	3.2e-38	131.8	0.1	3.9e-38	131.6	0.1	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Mem_trans	PF03547.18	gi|296241998|ref|YP_003649485.1|	-	2.3e-12	46.0	22.6	2.4e-08	32.8	10.6	2.3	1	1	1	2	2	2	2	Membrane	transport	protein
PA14	PF07691.12	gi|296241999|ref|YP_003649486.1|	-	8.3e-21	74.3	0.0	1.1e-20	74.0	0.0	1.1	1	0	0	1	1	1	1	PA14	domain
GLEYA	PF10528.9	gi|296241999|ref|YP_003649486.1|	-	0.017	15.5	0.0	0.079	13.4	0.0	2.2	2	1	0	2	2	2	0	GLEYA	domain
HD	PF01966.22	gi|296242000|ref|YP_003649487.1|	-	7.9e-05	22.9	0.8	0.00014	22.1	0.8	1.6	1	0	0	1	1	1	1	HD	domain
SSF	PF00474.17	gi|296242001|ref|YP_003649488.1|	-	8e-09	34.8	24.9	1.5e-08	33.9	24.9	1.6	1	1	0	1	1	1	1	Sodium:solute	symporter	family
Phytoreo_S7	PF07236.11	gi|296242001|ref|YP_003649488.1|	-	1.2	7.4	2.5	1.8	6.9	2.5	1.1	1	0	0	1	1	1	0	Phytoreovirus	S7	protein
MarR_2	PF12802.7	gi|296242004|ref|YP_003649491.1|	-	3e-07	30.2	0.1	8.7e-07	28.7	0.1	1.8	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|296242004|ref|YP_003649491.1|	-	4.9e-05	23.2	0.3	0.00033	20.5	0.1	2.3	2	0	0	2	2	2	1	MarR	family
DprA_WH	PF17782.1	gi|296242004|ref|YP_003649491.1|	-	5.4e-05	23.2	0.0	0.00016	21.7	0.0	1.8	1	0	0	1	1	1	1	DprA	winged	helix	domain
TrmB	PF01978.19	gi|296242004|ref|YP_003649491.1|	-	0.00018	21.3	0.1	0.00062	19.6	0.1	2.0	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|296242004|ref|YP_003649491.1|	-	0.00021	20.8	0.1	0.00053	19.5	0.1	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|296242004|ref|YP_003649491.1|	-	0.0034	17.3	0.0	0.008	16.1	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|296242004|ref|YP_003649491.1|	-	0.0043	16.8	0.1	0.012	15.4	0.1	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|296242004|ref|YP_003649491.1|	-	0.0058	16.8	0.0	0.021	15.0	0.0	1.9	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|296242004|ref|YP_003649491.1|	-	0.0077	16.0	0.1	0.023	14.5	0.1	1.9	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_36	PF13730.6	gi|296242004|ref|YP_003649491.1|	-	0.014	15.4	0.0	0.028	14.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|296242004|ref|YP_003649491.1|	-	0.022	14.4	0.1	0.065	12.9	0.1	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|296242004|ref|YP_003649491.1|	-	0.034	14.7	0.0	0.1	13.1	0.0	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
EAP30	PF04157.16	gi|296242004|ref|YP_003649491.1|	-	0.036	13.4	0.0	0.078	12.2	0.0	1.6	1	0	0	1	1	1	0	EAP30/Vps36	family
TBPIP	PF07106.13	gi|296242004|ref|YP_003649491.1|	-	0.074	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
HTH_5	PF01022.20	gi|296242004|ref|YP_003649491.1|	-	0.077	12.9	0.1	0.19	11.6	0.1	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
PAX	PF00292.18	gi|296242004|ref|YP_003649491.1|	-	0.094	12.6	0.1	0.29	11.1	0.1	1.8	2	0	0	2	2	2	0	'Paired	box'	domain
RuvB_C	PF05491.13	gi|296242004|ref|YP_003649491.1|	-	0.15	12.0	0.1	0.32	10.9	0.1	1.5	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
Ribosomal_S25	PF03297.15	gi|296242004|ref|YP_003649491.1|	-	0.18	12.1	0.1	0.29	11.4	0.1	1.3	1	0	0	1	1	1	0	S25	ribosomal	protein
NST1	PF13945.6	gi|296242004|ref|YP_003649491.1|	-	0.2	11.8	0.6	0.3	11.2	0.6	1.1	1	0	0	1	1	1	0	Salt	tolerance	down-regulator
ABC2_membrane	PF01061.24	gi|296242005|ref|YP_003649492.1|	-	0.0091	15.4	2.5	0.0091	15.4	2.5	2.1	2	0	0	2	2	2	2	ABC-2	type	transporter
TauE	PF01925.19	gi|296242005|ref|YP_003649492.1|	-	0.038	13.6	16.8	0.069	12.8	16.8	1.4	1	1	0	1	1	1	0	Sulfite	exporter	TauE/SafE
Polysacc_synt_C	PF14667.6	gi|296242005|ref|YP_003649492.1|	-	0.17	12.0	17.5	0.23	11.5	17.5	1.1	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	C-terminal	domain
Glucos_trans_II	PF14264.6	gi|296242005|ref|YP_003649492.1|	-	2.6	7.3	17.5	11	5.3	17.3	1.8	1	1	0	1	1	1	0	Glucosyl	transferase	GtrII
DUF2070	PF09843.9	gi|296242005|ref|YP_003649492.1|	-	6.6	4.9	12.7	8	4.6	12.7	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
NurA	PF09376.10	gi|296242008|ref|YP_003649495.1|	-	6.7e-08	32.5	0.0	8.5e-08	32.2	0.0	1.2	1	0	0	1	1	1	1	NurA	domain
HAS-barrel	PF09378.10	gi|296242009|ref|YP_003649496.1|	-	0.018	15.2	0.6	0.025	14.7	0.6	1.2	1	0	0	1	1	1	0	HAS	barrel	domain
tRNA-synt_2	PF00152.20	gi|296242010|ref|YP_003649497.1|	-	3.6e-45	154.4	0.0	4.4e-45	154.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
Aminotran_5	PF00266.19	gi|296242011|ref|YP_003649498.1|	-	2.7e-129	431.3	0.0	3.1e-129	431.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|296242011|ref|YP_003649498.1|	-	1.1e-09	38.1	0.1	1.6e-09	37.6	0.1	1.1	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|296242011|ref|YP_003649498.1|	-	7.1e-05	21.5	1.1	0.00028	19.6	0.1	2.1	2	1	0	3	3	3	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|296242011|ref|YP_003649498.1|	-	0.00013	21.4	0.0	0.00018	20.9	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
SelA	PF03841.13	gi|296242011|ref|YP_003649498.1|	-	0.00019	20.6	0.3	0.00035	19.7	0.0	1.6	2	0	0	2	2	2	1	L-seryl-tRNA	selenium	transferase
FAM195	PF14799.6	gi|296242011|ref|YP_003649498.1|	-	0.2	12.0	0.1	0.4	11.0	0.1	1.4	1	0	0	1	1	1	0	FAM195	family
Amidohydro_1	PF01979.20	gi|296242013|ref|YP_003649500.1|	-	8.1e-67	226.0	0.2	9.6e-67	225.7	0.2	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|296242013|ref|YP_003649500.1|	-	1.6e-17	64.1	1.3	3.4e-14	53.2	0.1	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|296242013|ref|YP_003649500.1|	-	0.19	11.0	0.0	0.35	10.1	0.0	1.3	1	0	0	1	1	1	0	Adenosine/AMP	deaminase
Adenine_deam_C	PF13382.6	gi|296242014|ref|YP_003649501.1|	-	3.8e-60	202.1	0.1	1.7e-59	200.0	0.1	1.9	2	0	0	2	2	2	1	Adenine	deaminase	C-terminal	domain
Amidohydro_1	PF01979.20	gi|296242014|ref|YP_003649501.1|	-	1.9e-28	99.8	0.1	1.5e-26	93.6	0.0	2.8	2	1	0	2	2	2	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|296242014|ref|YP_003649501.1|	-	1.7e-08	34.4	0.1	0.0018	17.8	0.1	2.4	2	0	0	2	2	2	2	Amidohydrolase	family
zf-ZPR1	PF03367.13	gi|296242015|ref|YP_003649502.1|	-	5.3e-28	97.9	0.0	6.3e-28	97.6	0.0	1.0	1	0	0	1	1	1	1	ZPR1	zinc-finger	domain
Lar_restr_allev	PF14354.6	gi|296242015|ref|YP_003649502.1|	-	0.014	15.8	0.1	0.028	14.8	0.1	1.4	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|296242015|ref|YP_003649502.1|	-	0.026	14.6	1.0	2.1	8.5	0.1	3.1	3	0	0	3	3	3	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|296242015|ref|YP_003649502.1|	-	0.095	12.4	2.1	7.7	6.4	0.1	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|296242015|ref|YP_003649502.1|	-	0.1	12.0	1.9	2.7	7.5	0.1	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|296242015|ref|YP_003649502.1|	-	0.64	9.6	5.8	1.1	8.8	0.0	3.3	3	0	0	3	3	3	0	TFIIB	zinc-binding
Radical_SAM	PF04055.21	gi|296242016|ref|YP_003649503.1|	-	4.4e-15	56.5	0.0	6.6e-15	55.9	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF1848	PF08902.11	gi|296242016|ref|YP_003649503.1|	-	8.8e-06	25.6	0.9	0.023	14.4	1.9	2.5	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF1848)
SIS	PF01380.22	gi|296242017|ref|YP_003649504.1|	-	4e-18	65.5	0.0	7.8e-18	64.6	0.0	1.4	1	0	0	1	1	1	1	SIS	domain
SIS_2	PF13580.6	gi|296242017|ref|YP_003649504.1|	-	2.6e-12	47.0	1.4	1.2e-07	31.8	0.3	2.2	1	1	1	2	2	2	2	SIS	domain
PRMT5	PF05185.16	gi|296242017|ref|YP_003649504.1|	-	0.0034	17.2	0.7	0.31	10.9	0.0	2.2	1	1	1	2	2	2	2	PRMT5	arginine-N-methyltransferase
2-Hacid_dh_C	PF02826.19	gi|296242017|ref|YP_003649504.1|	-	0.059	12.7	0.4	0.66	9.3	0.1	2.0	1	1	1	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
QueT	PF06177.11	gi|296242021|ref|YP_003649508.1|	-	9.3e-30	103.8	12.7	1.1e-29	103.5	12.7	1.1	1	0	0	1	1	1	1	QueT	transporter
ECF_trnsprt	PF12822.7	gi|296242021|ref|YP_003649508.1|	-	0.025	14.7	15.1	0.035	14.2	15.1	1.1	1	0	0	1	1	1	0	ECF	transporter,	substrate-specific	component
DUF1189	PF06691.11	gi|296242021|ref|YP_003649508.1|	-	7.3	6.1	13.5	0.59	9.7	8.3	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1189)
ABC_tran	PF00005.27	gi|296242022|ref|YP_003649509.1|	-	5e-21	75.7	0.0	7.2e-21	75.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242022|ref|YP_003649509.1|	-	1.9e-10	41.1	0.3	2.4e-05	24.3	0.6	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|296242022|ref|YP_003649509.1|	-	3.8e-08	33.0	0.0	0.0054	16.2	0.0	2.2	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|296242022|ref|YP_003649509.1|	-	2.1e-05	24.2	0.1	7.6e-05	22.4	0.1	1.9	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|296242022|ref|YP_003649509.1|	-	4e-05	24.2	0.1	6.2e-05	23.6	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|296242022|ref|YP_003649509.1|	-	0.001	19.0	0.0	0.0017	18.3	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
NACHT	PF05729.12	gi|296242022|ref|YP_003649509.1|	-	0.0048	16.8	0.2	0.03	14.2	0.1	2.0	2	0	0	2	2	2	1	NACHT	domain
AAA_15	PF13175.6	gi|296242022|ref|YP_003649509.1|	-	0.009	15.8	0.0	0.015	15.0	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|296242022|ref|YP_003649509.1|	-	0.017	15.1	0.0	0.023	14.6	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_28	PF13521.6	gi|296242022|ref|YP_003649509.1|	-	0.072	13.3	0.0	0.1	12.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|296242022|ref|YP_003649509.1|	-	0.089	12.8	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|296242022|ref|YP_003649509.1|	-	0.089	12.5	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|296242022|ref|YP_003649509.1|	-	0.1	12.1	0.1	0.15	11.6	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|296242022|ref|YP_003649509.1|	-	0.12	12.7	0.0	0.21	12.0	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
G-alpha	PF00503.20	gi|296242022|ref|YP_003649509.1|	-	0.13	11.4	0.0	0.17	11.0	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_22	PF13401.6	gi|296242022|ref|YP_003649509.1|	-	0.13	12.6	0.0	0.25	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|296242022|ref|YP_003649509.1|	-	0.14	12.1	0.0	0.3	11.0	0.0	1.5	2	0	0	2	2	2	0	NTPase
Mg_chelatase	PF01078.21	gi|296242022|ref|YP_003649509.1|	-	0.24	10.7	0.0	0.37	10.1	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Peptidase_M29	PF02073.15	gi|296242024|ref|YP_003649511.1|	-	6.9e-109	364.3	0.0	7.7e-109	364.1	0.0	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
Ferritin	PF00210.24	gi|296242025|ref|YP_003649512.1|	-	5.3e-39	133.4	4.9	6e-39	133.2	4.9	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Chalcone	PF02431.15	gi|296242025|ref|YP_003649512.1|	-	6.4e-05	22.5	1.0	9.1e-05	22.0	1.0	1.3	1	0	0	1	1	1	1	Chalcone-flavanone	isomerase
Rubrerythrin	PF02915.17	gi|296242025|ref|YP_003649512.1|	-	0.0006	20.2	4.4	0.0008	19.8	4.4	1.2	1	0	0	1	1	1	1	Rubrerythrin
Lipoprotein_10	PF03202.13	gi|296242025|ref|YP_003649512.1|	-	0.0022	18.4	1.8	0.0025	18.2	0.3	1.9	2	1	0	2	2	2	1	Putative	mycoplasma	lipoprotein,	C-terminal	region
BACK	PF07707.15	gi|296242025|ref|YP_003649512.1|	-	0.043	13.9	1.1	0.098	12.8	1.0	1.7	1	1	0	1	1	1	0	BTB	And	C-terminal	Kelch
Mad3_BUB1_I_2	PF17014.5	gi|296242025|ref|YP_003649512.1|	-	0.14	12.3	3.2	0.38	10.9	1.3	2.3	1	1	1	2	2	2	0	Putative	Mad3/BUB1	like	region	1	protein
DUF1987	PF09345.10	gi|296242025|ref|YP_003649512.1|	-	0.9	9.2	4.5	5.2	6.8	2.8	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1987)
CitG	PF01874.16	gi|296242026|ref|YP_003649513.1|	-	2.5e-54	184.8	0.0	2.8e-54	184.7	0.0	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
Oxidored_molyb	PF00174.19	gi|296242027|ref|YP_003649514.1|	-	2.2e-33	115.3	0.0	3.5e-33	114.6	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
P16-Arc	PF04699.14	gi|296242028|ref|YP_003649515.1|	-	0.025	15.1	0.2	0.032	14.7	0.2	1.1	1	0	0	1	1	1	0	ARP2/3	complex	16	kDa	subunit	(p16-Arc)
DUF1289	PF06945.13	gi|296242028|ref|YP_003649515.1|	-	0.069	13.0	0.1	0.11	12.3	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1289)
OTCace	PF00185.24	gi|296242029|ref|YP_003649516.1|	-	2.2e-42	144.8	0.0	4.1e-42	143.9	0.0	1.5	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|296242029|ref|YP_003649516.1|	-	3.4e-35	121.3	0.0	5.3e-35	120.6	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
BPD_transp_1	PF00528.22	gi|296242030|ref|YP_003649517.1|	-	5.7e-35	120.7	13.6	5.7e-35	120.7	13.6	2.1	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF4245	PF14030.6	gi|296242030|ref|YP_003649517.1|	-	0.16	12.0	0.4	0.34	10.9	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4245)
BPD_transp_1	PF00528.22	gi|296242031|ref|YP_003649518.1|	-	1.1e-27	96.9	13.1	1.1e-27	96.9	13.1	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|296242031|ref|YP_003649518.1|	-	0.0042	17.0	0.4	0.0042	17.0	0.4	3.4	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Pox_P21	PF05313.12	gi|296242031|ref|YP_003649518.1|	-	1.7	8.2	6.4	3	7.4	6.4	1.4	1	0	0	1	1	1	0	Poxvirus	P21	membrane	protein
ABC_tran	PF00005.27	gi|296242032|ref|YP_003649519.1|	-	1.1e-25	90.8	0.0	1.4e-25	90.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|296242032|ref|YP_003649519.1|	-	1.5e-14	54.3	0.0	2.4e-14	53.6	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|296242032|ref|YP_003649519.1|	-	2.7e-05	24.1	1.9	0.0025	17.7	0.3	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|296242032|ref|YP_003649519.1|	-	0.00055	19.4	0.0	0.0014	18.1	0.0	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AIG1	PF04548.16	gi|296242032|ref|YP_003649519.1|	-	0.0039	16.6	0.2	0.007	15.7	0.2	1.3	1	0	0	1	1	1	1	AIG1	family
AAA_29	PF13555.6	gi|296242032|ref|YP_003649519.1|	-	0.0072	16.0	0.0	0.015	15.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|296242032|ref|YP_003649519.1|	-	0.01	16.1	0.9	0.085	13.1	0.9	2.0	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|296242032|ref|YP_003649519.1|	-	0.039	13.3	0.0	0.25	10.7	0.0	2.2	3	0	0	3	3	3	0	Magnesium	chelatase,	subunit	ChlI
RsgA_GTPase	PF03193.16	gi|296242032|ref|YP_003649519.1|	-	0.052	13.4	0.0	0.088	12.7	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
Zeta_toxin	PF06414.12	gi|296242032|ref|YP_003649519.1|	-	0.1	11.9	0.0	11	5.2	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
AAA_23	PF13476.6	gi|296242032|ref|YP_003649519.1|	-	0.18	12.3	0.1	0.26	11.8	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|296242033|ref|YP_003649520.1|	-	5.4e-34	117.6	0.0	7.6e-34	117.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242033|ref|YP_003649520.1|	-	5.6e-07	29.7	3.6	0.0048	16.8	0.3	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_5	PF07728.14	gi|296242033|ref|YP_003649520.1|	-	0.0002	21.4	1.1	0.12	12.4	0.0	2.4	2	1	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
SMC_N	PF02463.19	gi|296242033|ref|YP_003649520.1|	-	0.00023	20.7	0.4	0.00083	18.9	0.4	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|296242033|ref|YP_003649520.1|	-	0.00029	21.3	0.0	0.0005	20.5	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|296242033|ref|YP_003649520.1|	-	0.00053	19.4	0.0	0.0033	16.8	0.0	2.2	2	1	1	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
oligo_HPY	PF08352.12	gi|296242033|ref|YP_003649520.1|	-	0.0006	20.3	0.1	0.0014	19.1	0.1	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|296242033|ref|YP_003649520.1|	-	0.00075	19.8	2.3	0.0079	16.5	2.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|296242033|ref|YP_003649520.1|	-	0.00075	19.2	0.0	0.0013	18.5	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DEAD	PF00270.29	gi|296242033|ref|YP_003649520.1|	-	0.00078	19.3	0.3	1.2	8.8	0.0	2.2	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
AAA_23	PF13476.6	gi|296242033|ref|YP_003649520.1|	-	0.0027	18.2	0.7	0.012	16.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|296242033|ref|YP_003649520.1|	-	0.0029	17.3	0.1	0.005	16.6	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|296242033|ref|YP_003649520.1|	-	0.0036	17.2	0.6	0.0081	16.1	0.6	1.6	1	0	0	1	1	1	1	NACHT	domain
AAA_25	PF13481.6	gi|296242033|ref|YP_003649520.1|	-	0.0091	15.6	0.4	1.3	8.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|296242033|ref|YP_003649520.1|	-	0.01	15.7	0.1	0.025	14.5	0.1	1.6	1	0	0	1	1	1	0	RsgA	GTPase
ATP-synt_ab	PF00006.25	gi|296242033|ref|YP_003649520.1|	-	0.011	15.4	0.0	0.014	15.0	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
T2SSE	PF00437.20	gi|296242033|ref|YP_003649520.1|	-	0.017	14.2	0.0	0.035	13.2	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Pox_A32	PF04665.12	gi|296242033|ref|YP_003649520.1|	-	0.02	14.4	0.1	0.039	13.4	0.1	1.4	1	0	0	1	1	1	0	Poxvirus	A32	protein
MobB	PF03205.14	gi|296242033|ref|YP_003649520.1|	-	0.021	14.7	0.0	0.039	13.8	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Roc	PF08477.13	gi|296242033|ref|YP_003649520.1|	-	0.024	14.9	1.0	0.045	14.0	1.0	1.4	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
TniB	PF05621.11	gi|296242033|ref|YP_003649520.1|	-	0.025	14.0	2.2	0.8	9.1	0.2	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
FtsK_SpoIIIE	PF01580.18	gi|296242033|ref|YP_003649520.1|	-	0.025	13.9	0.7	0.054	12.8	0.1	1.7	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
DLIC	PF05783.11	gi|296242033|ref|YP_003649520.1|	-	0.035	12.9	0.0	0.056	12.3	0.0	1.3	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
ATPase_2	PF01637.18	gi|296242033|ref|YP_003649520.1|	-	0.037	13.9	0.2	0.065	13.1	0.2	1.5	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
ABC_ATPase	PF09818.9	gi|296242033|ref|YP_003649520.1|	-	0.039	12.7	0.8	3.6	6.3	0.0	2.3	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
cobW	PF02492.19	gi|296242033|ref|YP_003649520.1|	-	0.045	13.3	0.1	0.089	12.4	0.1	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_7	PF12775.7	gi|296242033|ref|YP_003649520.1|	-	0.05	13.1	0.0	0.094	12.2	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_33	PF13671.6	gi|296242033|ref|YP_003649520.1|	-	0.056	13.6	0.0	0.11	12.7	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|296242033|ref|YP_003649520.1|	-	0.06	13.4	0.0	0.13	12.3	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.9	gi|296242033|ref|YP_003649520.1|	-	0.062	13.0	1.6	0.1	12.4	0.5	1.8	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_30	PF13604.6	gi|296242033|ref|YP_003649520.1|	-	0.085	12.6	0.2	0.21	11.3	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|296242033|ref|YP_003649520.1|	-	0.09	12.7	0.5	0.29	11.0	0.1	2.0	2	0	0	2	2	2	0	NTPase
G-alpha	PF00503.20	gi|296242033|ref|YP_003649520.1|	-	0.11	11.6	0.3	0.15	11.2	0.2	1.3	1	1	0	1	1	1	0	G-protein	alpha	subunit
AAA_15	PF13175.6	gi|296242033|ref|YP_003649520.1|	-	0.11	12.1	0.9	0.2	11.4	0.3	1.7	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_19	PF13245.6	gi|296242033|ref|YP_003649520.1|	-	0.12	12.7	1.5	0.23	11.8	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|296242033|ref|YP_003649520.1|	-	0.18	11.0	0.8	0.26	10.4	0.8	1.6	1	1	0	1	1	1	0	NB-ARC	domain
AAA_28	PF13521.6	gi|296242033|ref|YP_003649520.1|	-	0.45	10.8	1.5	0.99	9.6	1.5	1.5	1	0	0	1	1	1	0	AAA	domain
tRNA-synt_2d	PF01409.20	gi|296242034|ref|YP_003649521.1|	-	7.4e-81	271.2	0.0	1e-80	270.8	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA_synthFbeta	PF17759.1	gi|296242034|ref|YP_003649521.1|	-	5e-08	32.7	0.0	3.2e-05	23.5	0.0	2.5	2	0	0	2	2	2	2	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
tRNA-synt_2	PF00152.20	gi|296242034|ref|YP_003649521.1|	-	2.8e-06	26.6	0.5	0.0033	16.6	0.0	3.2	3	1	0	3	3	3	2	tRNA	synthetases	class	II	(D,	K	and	N)
HTH_DeoR	PF08220.12	gi|296242034|ref|YP_003649521.1|	-	0.0096	15.7	0.1	0.0096	15.7	0.1	2.4	3	0	0	3	3	3	1	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|296242034|ref|YP_003649521.1|	-	0.037	14.0	2.1	0.48	10.4	0.1	2.8	2	1	1	3	3	3	0	Crp-like	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|296242034|ref|YP_003649521.1|	-	0.096	12.5	0.2	1.6	8.5	0.0	3.0	2	1	0	2	2	2	0	LexA	DNA	binding	domain
Methyltr_RsmB-F	PF01189.17	gi|296242035|ref|YP_003649522.1|	-	7e-28	97.6	0.0	1.1e-27	97.0	0.0	1.2	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_25	PF13649.6	gi|296242035|ref|YP_003649522.1|	-	0.0073	17.0	0.0	0.076	13.7	0.0	2.3	2	1	0	2	2	2	1	Methyltransferase	domain
STN1_2	PF09170.10	gi|296242035|ref|YP_003649522.1|	-	0.025	14.8	0.0	0.039	14.2	0.0	1.2	1	0	0	1	1	1	0	CST,	Suppressor	of	cdc	thirteen	homolog,	complex	subunit	STN1
Methyltransf_4	PF02390.17	gi|296242035|ref|YP_003649522.1|	-	0.036	13.5	0.0	0.099	12.1	0.0	1.7	1	0	0	1	1	1	0	Putative	methyltransferase
Radical_SAM	PF04055.21	gi|296242036|ref|YP_003649523.1|	-	2.8e-05	24.6	0.0	0.00012	22.5	0.0	2.0	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|296242036|ref|YP_003649523.1|	-	0.0022	18.1	0.0	0.0046	17.1	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|296242036|ref|YP_003649523.1|	-	0.022	15.0	0.0	0.13	12.5	0.0	1.9	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Na_H_Exchanger	PF00999.21	gi|296242037|ref|YP_003649524.1|	-	2.2e-24	86.0	47.9	2.8e-24	85.6	47.9	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
tRNA_synthFbeta	PF17759.1	gi|296242038|ref|YP_003649525.1|	-	8.1e-37	126.7	0.0	1.5e-36	125.8	0.0	1.4	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|296242038|ref|YP_003649525.1|	-	2.3e-20	72.7	0.8	5.4e-13	49.0	0.2	2.8	2	0	0	2	2	2	2	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|296242038|ref|YP_003649525.1|	-	1e-13	51.3	0.0	1.9e-13	50.5	0.0	1.4	1	0	0	1	1	1	1	B3/4	domain
PhetRS_B1	PF18262.1	gi|296242038|ref|YP_003649525.1|	-	0.00025	21.2	0.1	0.062	13.5	0.0	3.3	2	1	0	2	2	2	1	Phe-tRNA	synthetase	beta	subunit	B1	domain
tRNA-synt_2d	PF01409.20	gi|296242038|ref|YP_003649525.1|	-	0.029	13.9	0.0	0.07	12.6	0.0	1.7	1	0	0	1	1	1	0	tRNA	synthetases	class	II	core	domain	(F)
Peptidase_M28	PF04389.17	gi|296242039|ref|YP_003649526.1|	-	1.4e-05	24.9	0.2	9.4e-05	22.2	0.2	2.0	1	1	0	1	1	1	1	Peptidase	family	M28
DUF4910	PF16254.5	gi|296242039|ref|YP_003649526.1|	-	7.5e-05	21.7	0.1	0.001	18.0	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4910)
Phosphorylase	PF00343.20	gi|296242040|ref|YP_003649527.1|	-	8.5e-14	50.8	0.0	6.2e-11	41.3	0.0	2.7	2	1	1	3	3	3	2	Carbohydrate	phosphorylase
Glycos_transf_1	PF00534.20	gi|296242040|ref|YP_003649527.1|	-	1.7e-10	40.7	0.0	3.2e-10	39.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|296242040|ref|YP_003649527.1|	-	2.5e-07	31.2	0.0	4.9e-07	30.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Usp	PF00582.26	gi|296242041|ref|YP_003649528.1|	-	2.4e-22	80.0	0.5	1.9e-20	73.8	0.5	2.1	1	1	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.21	gi|296242041|ref|YP_003649528.1|	-	0.00052	20.0	0.0	0.00069	19.6	0.0	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
DUF2982	PF11201.8	gi|296242041|ref|YP_003649528.1|	-	0.075	12.6	0.0	0.1	12.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2982)
Gp_dh_C	PF02800.20	gi|296242042|ref|YP_003649529.1|	-	1.7e-18	66.7	0.3	2.8e-18	66.0	0.3	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.20	gi|296242042|ref|YP_003649529.1|	-	1e-08	35.3	0.0	2.7e-08	34.0	0.0	1.7	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|296242042|ref|YP_003649529.1|	-	3.4e-06	27.3	1.0	3.1e-05	24.2	0.1	2.4	2	0	0	2	2	2	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|296242042|ref|YP_003649529.1|	-	0.021	15.7	0.0	0.057	14.3	0.0	1.9	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Sacchrp_dh_NADP	PF03435.18	gi|296242042|ref|YP_003649529.1|	-	0.062	13.6	0.1	0.54	10.5	0.0	2.4	3	1	0	3	3	3	0	Saccharopine	dehydrogenase	NADP	binding	domain
PGK	PF00162.19	gi|296242043|ref|YP_003649530.1|	-	1e-93	314.3	0.0	1.2e-93	314.1	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
DHO_dh	PF01180.21	gi|296242044|ref|YP_003649531.1|	-	1.7e-31	109.6	0.1	1e-27	97.1	0.0	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
Fer4	PF00037.27	gi|296242044|ref|YP_003649531.1|	-	2e-14	52.7	11.3	1.4e-07	31.0	1.6	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|296242044|ref|YP_003649531.1|	-	2.8e-12	46.5	6.5	6.1e-12	45.5	6.5	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|296242044|ref|YP_003649531.1|	-	2.5e-10	40.8	9.9	5e-10	39.8	9.9	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296242044|ref|YP_003649531.1|	-	2.6e-10	39.8	11.4	0.00011	22.1	2.8	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|296242044|ref|YP_003649531.1|	-	1.6e-09	37.4	11.5	1.6e-05	24.8	1.3	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|296242044|ref|YP_003649531.1|	-	4.8e-09	36.2	8.5	8.8e-09	35.4	8.5	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|296242044|ref|YP_003649531.1|	-	4.4e-07	29.9	21.5	1.3e-05	25.2	11.8	2.4	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|296242044|ref|YP_003649531.1|	-	1.6e-06	28.9	7.5	0.0029	18.5	2.0	2.5	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
NMO	PF03060.15	gi|296242044|ref|YP_003649531.1|	-	3.3e-05	23.4	2.2	6.7e-05	22.4	2.1	1.4	1	1	0	1	1	1	1	Nitronate	monooxygenase
Fer4_8	PF13183.6	gi|296242044|ref|YP_003649531.1|	-	0.00043	20.7	11.5	0.0041	17.5	11.7	2.4	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
FMN_dh	PF01070.18	gi|296242044|ref|YP_003649531.1|	-	0.00046	19.3	0.2	0.0037	16.3	0.1	2.2	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
Fer4_13	PF13370.6	gi|296242044|ref|YP_003649531.1|	-	0.00073	20.0	10.5	0.044	14.3	1.3	2.5	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|296242044|ref|YP_003649531.1|	-	0.00083	20.1	12.0	0.045	14.5	1.9	2.6	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|296242044|ref|YP_003649531.1|	-	0.0013	19.5	8.1	0.28	12.0	0.5	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
His_biosynth	PF00977.21	gi|296242044|ref|YP_003649531.1|	-	0.0081	15.6	0.1	0.02	14.3	0.1	1.6	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Fer4_3	PF12798.7	gi|296242044|ref|YP_003649531.1|	-	0.012	16.5	19.4	0.055	14.4	4.6	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|296242044|ref|YP_003649531.1|	-	0.021	15.4	12.3	2.5	8.7	12.4	2.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|296242044|ref|YP_003649531.1|	-	0.026	15.0	16.3	0.2	12.3	4.1	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
IMPDH	PF00478.25	gi|296242044|ref|YP_003649531.1|	-	0.27	10.2	2.5	0.16	10.9	0.2	1.7	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
Cren7	PF11520.8	gi|296242045|ref|YP_003649532.1|	-	1.3e-34	117.9	2.8	1.4e-34	117.8	2.8	1.0	1	0	0	1	1	1	1	Chromatin	protein	Cren7
Amidohydro_1	PF01979.20	gi|296242046|ref|YP_003649533.1|	-	2.3e-50	171.9	0.1	2.9e-50	171.5	0.1	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|296242046|ref|YP_003649533.1|	-	8.9e-16	58.4	0.1	1.1e-11	44.9	0.0	2.4	2	1	0	2	2	2	2	Amidohydrolase	family
EamA	PF00892.20	gi|296242047|ref|YP_003649534.1|	-	7.6e-29	100.6	37.9	5.1e-16	59.1	16.4	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
AA_kinase	PF00696.28	gi|296242048|ref|YP_003649535.1|	-	8.5e-33	113.9	0.0	1.3e-32	113.3	0.0	1.3	1	1	0	1	1	1	1	Amino	acid	kinase	family
Radical_SAM	PF04055.21	gi|296242049|ref|YP_003649536.1|	-	1.5e-14	54.8	0.0	2.6e-14	53.9	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|296242049|ref|YP_003649536.1|	-	1.3e-08	35.2	0.1	5.7e-08	33.1	0.0	1.9	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|296242049|ref|YP_003649536.1|	-	5.8e-06	26.4	0.0	5.8e-05	23.2	0.0	2.1	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
ComA	PF02679.15	gi|296242049|ref|YP_003649536.1|	-	0.096	12.1	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	(2R)-phospho-3-sulfolactate	synthase	(ComA)
A_thal_3526	PF09713.10	gi|296242050|ref|YP_003649537.1|	-	0.25	11.6	4.0	4.1	7.7	0.0	2.7	2	0	0	2	2	2	0	Plant	protein	1589	of	unknown	function	(A_thal_3526)
OTCace	PF00185.24	gi|296242051|ref|YP_003649538.1|	-	2.4e-38	131.7	0.0	1e-37	129.6	0.0	1.8	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|296242051|ref|YP_003649538.1|	-	8.9e-33	113.4	0.0	2.2e-32	112.1	0.0	1.6	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
DUF711	PF05167.12	gi|296242052|ref|YP_003649539.1|	-	1.2e-34	119.9	0.0	5.2e-29	101.4	0.0	2.1	2	0	0	2	2	2	2	Uncharacterised	ACR	(DUF711)
UPF0180	PF03698.13	gi|296242052|ref|YP_003649539.1|	-	0.17	12.1	0.1	1.1	9.5	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0180)
OTCace	PF00185.24	gi|296242053|ref|YP_003649540.1|	-	4.1e-56	189.4	0.0	5.9e-56	188.9	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|296242053|ref|YP_003649540.1|	-	4e-51	172.9	0.1	3e-50	170.1	0.0	2.1	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
Glyco_hydro_101	PF12905.7	gi|296242053|ref|YP_003649540.1|	-	0.14	11.5	0.0	0.21	10.9	0.0	1.2	1	0	0	1	1	1	0	Endo-alpha-N-acetylgalactosaminidase
STT3	PF02516.14	gi|296242054|ref|YP_003649541.1|	-	3.7e-16	59.1	31.7	5e-16	58.7	31.7	1.2	1	0	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
V_ATPase_I	PF01496.19	gi|296242055|ref|YP_003649542.1|	-	0.02	12.9	0.2	0.022	12.7	0.2	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
LOH1CR12	PF10158.9	gi|296242055|ref|YP_003649542.1|	-	0.023	14.7	0.7	0.053	13.5	0.4	1.9	1	1	0	1	1	1	0	Tumour	suppressor	protein
Baculo_PEP_C	PF04513.12	gi|296242055|ref|YP_003649542.1|	-	0.049	13.7	0.7	0.27	11.3	0.2	2.0	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
4HB_MCP_1	PF12729.7	gi|296242055|ref|YP_003649542.1|	-	0.096	12.2	3.4	0.13	11.8	3.4	1.3	1	0	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
Lambda_CIII	PF02061.16	gi|296242055|ref|YP_003649542.1|	-	0.17	12.0	1.0	1.2	9.3	0.2	2.5	2	0	0	2	2	2	0	Lambda	Phage	CIII
Baculo_F	PF12259.8	gi|296242055|ref|YP_003649542.1|	-	0.2	10.2	1.2	0.24	9.9	1.2	1.1	1	0	0	1	1	1	0	Baculovirus	F	protein
DUF2203	PF09969.9	gi|296242055|ref|YP_003649542.1|	-	0.25	12.1	2.4	0.96	10.2	0.7	2.3	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
Saccharop_dh_N	PF04455.12	gi|296242056|ref|YP_003649543.1|	-	0.009	16.4	0.0	0.36	11.3	0.0	2.7	3	0	0	3	3	3	1	LOR/SDH	bifunctional	enzyme	conserved	region
DUF432	PF04254.13	gi|296242056|ref|YP_003649543.1|	-	0.0095	16.1	0.0	0.016	15.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF432)
ParA	PF10609.9	gi|296242057|ref|YP_003649544.1|	-	1.9e-81	273.1	0.0	2.2e-81	272.9	0.0	1.0	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|296242057|ref|YP_003649544.1|	-	3.5e-11	43.3	0.0	1.2e-10	41.5	0.0	1.8	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|296242057|ref|YP_003649544.1|	-	1.6e-06	28.2	0.1	5.7e-05	23.1	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|296242057|ref|YP_003649544.1|	-	7.1e-06	25.4	0.7	2e-05	24.0	0.3	1.8	2	0	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|296242057|ref|YP_003649544.1|	-	0.00022	20.8	0.1	0.055	12.9	0.0	2.3	2	1	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_26	PF13500.6	gi|296242057|ref|YP_003649544.1|	-	0.0029	17.5	1.4	0.5	10.2	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Desulfoferrod_N	PF06397.12	gi|296242057|ref|YP_003649544.1|	-	0.0083	15.7	0.1	0.015	14.9	0.1	1.4	1	0	0	1	1	1	1	Desulfoferrodoxin,	N-terminal	domain
CBP_BcsQ	PF06564.12	gi|296242057|ref|YP_003649544.1|	-	0.014	14.9	0.0	0.046	13.2	0.1	1.8	2	0	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|296242057|ref|YP_003649544.1|	-	0.041	13.2	0.0	0.065	12.5	0.0	1.3	1	0	0	1	1	1	0	ATPase	MipZ
Zeta_toxin	PF06414.12	gi|296242057|ref|YP_003649544.1|	-	0.05	12.9	0.0	0.069	12.4	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
RsgA_GTPase	PF03193.16	gi|296242057|ref|YP_003649544.1|	-	0.068	13.1	0.4	0.34	10.8	0.0	2.0	2	0	0	2	2	2	0	RsgA	GTPase
AAA_25	PF13481.6	gi|296242057|ref|YP_003649544.1|	-	0.072	12.7	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
CLP1_P	PF16575.5	gi|296242057|ref|YP_003649544.1|	-	0.08	12.7	0.0	0.15	11.8	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
PhoH	PF02562.16	gi|296242057|ref|YP_003649544.1|	-	0.081	12.4	0.1	0.19	11.2	0.0	1.6	2	0	0	2	2	2	0	PhoH-like	protein
NB-ARC	PF00931.22	gi|296242057|ref|YP_003649544.1|	-	0.13	11.4	0.1	0.19	10.9	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
zf-RING_7	PF02591.15	gi|296242057|ref|YP_003649544.1|	-	0.17	12.1	0.1	0.36	11.0	0.1	1.6	1	0	0	1	1	1	0	C4-type	zinc	ribbon	domain
AAA_16	PF13191.6	gi|296242057|ref|YP_003649544.1|	-	0.18	12.2	0.0	0.42	11.0	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
APS_kinase	PF01583.20	gi|296242057|ref|YP_003649544.1|	-	0.19	11.6	0.0	0.31	10.9	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
GHMP_kinases_N	PF00288.26	gi|296242058|ref|YP_003649545.1|	-	7.5e-20	70.9	0.1	1.3e-19	70.1	0.1	1.4	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|296242058|ref|YP_003649545.1|	-	3.2e-13	49.8	0.2	1.2e-12	48.0	0.2	1.9	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
CN_hydrolase	PF00795.22	gi|296242060|ref|YP_003649547.1|	-	1.5e-30	106.5	0.0	1.8e-30	106.1	0.0	1.1	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
ABC_tran	PF00005.27	gi|296242062|ref|YP_003649549.1|	-	1.1e-27	97.2	0.0	2.3e-27	96.2	0.0	1.5	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|296242062|ref|YP_003649549.1|	-	3.9e-10	40.0	0.6	0.00027	20.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|296242062|ref|YP_003649549.1|	-	2.2e-05	24.0	0.2	0.16	11.4	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|296242062|ref|YP_003649549.1|	-	8.2e-05	22.3	0.0	0.00013	21.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|296242062|ref|YP_003649549.1|	-	0.00021	21.9	0.1	0.00052	20.6	0.1	1.6	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|296242062|ref|YP_003649549.1|	-	0.0016	18.9	0.3	0.012	16.1	0.3	2.5	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.6	gi|296242062|ref|YP_003649549.1|	-	0.004	16.9	0.0	0.0065	16.2	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|296242062|ref|YP_003649549.1|	-	0.0097	15.6	0.0	0.018	14.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.6	gi|296242062|ref|YP_003649549.1|	-	0.015	15.6	0.0	0.032	14.6	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|296242062|ref|YP_003649549.1|	-	0.06	13.1	0.0	4.3	7.1	0.0	2.2	2	0	0	2	2	2	0	MukB	N-terminal
AAA_30	PF13604.6	gi|296242062|ref|YP_003649549.1|	-	0.11	12.2	0.0	0.26	11.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|296242062|ref|YP_003649549.1|	-	0.18	11.8	0.0	0.6	10.1	0.0	1.8	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
SbcCD_C	PF13558.6	gi|296242062|ref|YP_003649549.1|	-	0.18	12.1	0.0	1.2	9.4	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Fer4_15	PF13459.6	gi|296242064|ref|YP_003649551.1|	-	1.8e-15	57.4	1.4	2.1e-15	57.2	1.4	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|296242064|ref|YP_003649551.1|	-	5.8e-13	49.2	0.9	7.1e-13	48.9	0.9	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_10	PF13237.6	gi|296242064|ref|YP_003649551.1|	-	0.0015	18.6	1.1	0.0084	16.2	1.5	1.9	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|296242064|ref|YP_003649551.1|	-	0.013	16.1	2.9	0.7	10.5	0.7	2.2	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|296242064|ref|YP_003649551.1|	-	0.022	15.2	0.1	0.036	14.5	0.1	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|296242064|ref|YP_003649551.1|	-	0.08	12.8	8.2	0.24	11.3	0.2	2.8	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|296242064|ref|YP_003649551.1|	-	0.093	12.9	2.8	1.5	9.0	2.8	2.1	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|296242064|ref|YP_003649551.1|	-	0.48	10.6	7.4	3.6	7.8	0.1	3.0	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|296242064|ref|YP_003649551.1|	-	0.88	10.7	7.4	13	7.0	2.0	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF2624	PF11116.8	gi|296242065|ref|YP_003649552.1|	-	4.6e-06	27.4	0.9	1.2e-05	26.1	0.5	2.0	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF2624)
MobB	PF03205.14	gi|296242065|ref|YP_003649552.1|	-	0.036	14.0	0.1	2	8.3	0.1	2.3	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_I-T	PF01931.18	gi|296242066|ref|YP_003649553.1|	-	4.4e-45	153.4	0.0	4.9e-45	153.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
DUF72	PF01904.18	gi|296242067|ref|YP_003649554.1|	-	6e-43	147.5	0.3	7.2e-43	147.2	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
PBP_like	PF12727.7	gi|296242068|ref|YP_003649555.1|	-	7.5e-56	188.3	0.0	1.6e-55	187.3	0.0	1.5	1	0	0	1	1	1	1	PBP	superfamily	domain
MoeA_N	PF03453.17	gi|296242068|ref|YP_003649555.1|	-	1.2e-39	135.6	0.1	5.9e-39	133.3	0.0	2.1	3	0	0	3	3	3	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|296242068|ref|YP_003649555.1|	-	9.9e-23	80.4	0.0	2.2e-22	79.3	0.0	1.5	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|296242068|ref|YP_003649555.1|	-	1.5e-09	37.9	0.0	3.4e-09	36.8	0.0	1.7	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
SBP_bac_11	PF13531.6	gi|296242068|ref|YP_003649555.1|	-	0.0013	18.6	0.0	0.0027	17.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
OpuAC	PF04069.12	gi|296242068|ref|YP_003649555.1|	-	0.024	14.2	0.0	0.046	13.3	0.0	1.4	1	0	0	1	1	1	0	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
Phosphonate-bd	PF12974.7	gi|296242068|ref|YP_003649555.1|	-	0.069	12.7	0.0	0.33	10.5	0.0	2.2	1	1	1	2	2	2	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
DEAD	PF00270.29	gi|296242069|ref|YP_003649556.1|	-	1e-21	77.5	0.0	1.8e-21	76.7	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_5	PF14520.6	gi|296242069|ref|YP_003649556.1|	-	1.9e-10	41.2	0.2	4.1e-09	36.9	0.1	2.8	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
Helicase_C	PF00271.31	gi|296242069|ref|YP_003649556.1|	-	2.6e-09	37.4	0.1	3.1e-08	33.9	0.0	2.7	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|296242069|ref|YP_003649556.1|	-	5.4e-08	33.0	0.0	1.1e-07	32.1	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH_2	PF12826.7	gi|296242069|ref|YP_003649556.1|	-	9.9e-06	25.6	0.0	4.2e-05	23.6	0.0	2.1	1	1	1	2	2	2	1	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.9	gi|296242069|ref|YP_003649556.1|	-	0.0052	16.6	0.0	0.016	15.0	0.0	1.8	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
DUF4332	PF14229.6	gi|296242069|ref|YP_003649556.1|	-	0.042	14.1	0.0	0.11	12.8	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
SNF2_N	PF00176.23	gi|296242069|ref|YP_003649556.1|	-	0.077	11.7	0.0	0.12	11.1	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
Sec63	PF02889.16	gi|296242069|ref|YP_003649556.1|	-	0.11	11.6	0.0	0.26	10.4	0.0	1.5	2	0	0	2	2	2	0	Sec63	Brl	domain
HHH_8	PF14716.6	gi|296242069|ref|YP_003649556.1|	-	0.13	12.6	0.0	0.98	9.8	0.0	2.4	1	1	1	2	2	2	0	Helix-hairpin-helix	domain
UPRTase	PF14681.6	gi|296242070|ref|YP_003649557.1|	-	2.5e-39	134.9	0.0	3.2e-39	134.5	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|296242070|ref|YP_003649557.1|	-	3.8e-07	29.7	0.0	6.3e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
ParA	PF10609.9	gi|296242071|ref|YP_003649558.1|	-	2.7e-36	125.3	0.0	4.8e-36	124.4	0.0	1.5	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|296242071|ref|YP_003649558.1|	-	9.3e-08	32.2	0.0	1.5e-07	31.6	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|296242071|ref|YP_003649558.1|	-	0.0014	18.5	0.0	0.043	13.7	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|296242071|ref|YP_003649558.1|	-	0.017	14.3	0.0	0.71	9.0	0.0	2.2	2	0	0	2	2	2	0	Anion-transporting	ATPase
HypA	PF01155.19	gi|296242072|ref|YP_003649559.1|	-	7.2e-18	64.6	0.0	9.2e-18	64.3	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Lar_restr_allev	PF14354.6	gi|296242072|ref|YP_003649559.1|	-	0.0055	17.0	0.1	0.66	10.4	0.1	2.2	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
TFIIS_C	PF01096.18	gi|296242072|ref|YP_003649559.1|	-	0.011	15.5	1.5	1.3	8.9	0.1	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_9	PF14369.6	gi|296242072|ref|YP_003649559.1|	-	0.019	15.2	0.2	0.098	12.9	0.2	2.0	1	1	0	1	1	1	0	zinc-ribbon
UPF0547	PF10571.9	gi|296242072|ref|YP_003649559.1|	-	0.022	14.8	2.2	1.3	9.2	0.2	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DNA_RNApol_7kD	PF03604.13	gi|296242072|ref|YP_003649559.1|	-	0.026	14.2	0.9	3.2	7.5	0.0	2.4	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-HYPF	PF07503.12	gi|296242072|ref|YP_003649559.1|	-	0.038	13.8	0.8	2.7	7.8	0.1	2.2	2	0	0	2	2	2	0	HypF	finger
Zn-ribbon_8	PF09723.10	gi|296242072|ref|YP_003649559.1|	-	0.047	13.8	2.6	2.1	8.5	3.2	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
DUF3969	PF13108.6	gi|296242072|ref|YP_003649559.1|	-	0.073	13.1	0.1	0.17	11.9	0.1	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3969)
Ribosomal_L37e	PF01907.19	gi|296242072|ref|YP_003649559.1|	-	0.078	13.1	1.0	0.79	9.9	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	protein	L37e
zinc_ribbon_4	PF13717.6	gi|296242072|ref|YP_003649559.1|	-	0.083	12.8	1.6	4.9	7.2	0.1	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
Mu-like_Com	PF10122.9	gi|296242072|ref|YP_003649559.1|	-	0.12	11.9	0.2	1.1	8.7	0.1	2.1	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
TF_Zn_Ribbon	PF08271.12	gi|296242072|ref|YP_003649559.1|	-	0.17	11.4	1.0	0.52	9.9	0.1	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
PriA_CRR	PF18319.1	gi|296242072|ref|YP_003649559.1|	-	0.71	9.9	4.4	0.72	9.9	0.1	2.2	2	0	0	2	2	2	0	PriA	DNA	helicase	Cys-rich	region	(CRR)	domain
HMG-CoA_red	PF00368.18	gi|296242073|ref|YP_003649560.1|	-	1.6e-107	359.7	5.8	1.8e-107	359.5	5.8	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
DUF3759	PF12585.8	gi|296242073|ref|YP_003649560.1|	-	0.16	12.0	0.5	1.3	9.1	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3759)
MFS_1	PF07690.16	gi|296242074|ref|YP_003649561.1|	-	6.1e-27	94.5	40.0	1.6e-21	76.6	29.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|296242074|ref|YP_003649561.1|	-	5.9e-08	32.0	25.8	0.00015	20.7	2.6	2.1	1	1	0	2	2	2	2	MFS_1	like	family
Glycos_transf_4	PF00953.21	gi|296242075|ref|YP_003649562.1|	-	5.6e-27	94.7	10.1	5.6e-27	94.7	10.1	1.9	3	0	0	3	3	3	1	Glycosyl	transferase	family	4
ERCC4	PF02732.15	gi|296242076|ref|YP_003649563.1|	-	8.7e-18	65.0	0.0	1.2e-17	64.5	0.0	1.2	1	0	0	1	1	1	1	ERCC4	domain
HHH_2	PF12826.7	gi|296242076|ref|YP_003649563.1|	-	3.3e-09	36.7	0.0	6.7e-09	35.7	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|296242076|ref|YP_003649563.1|	-	3.4e-07	30.7	0.1	1.6e-06	28.6	0.1	2.1	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
HHH	PF00633.23	gi|296242076|ref|YP_003649563.1|	-	0.00014	21.5	0.0	0.00036	20.2	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
RNA_pol_A_CTD	PF03118.15	gi|296242076|ref|YP_003649563.1|	-	0.11	12.3	1.3	0.2	11.4	0.2	2.0	2	0	0	2	2	2	0	Bacterial	RNA	polymerase,	alpha	chain	C	terminal	domain
HHH_3	PF12836.7	gi|296242076|ref|YP_003649563.1|	-	0.14	12.5	0.2	0.72	10.1	0.0	2.2	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
BPL_LplA_LipB	PF03099.19	gi|296242077|ref|YP_003649564.1|	-	0.00045	20.1	0.0	0.00076	19.4	0.0	1.4	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
DUF2283	PF10049.9	gi|296242077|ref|YP_003649564.1|	-	0.11	12.8	0.5	8.3	6.7	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2283)
Lip_prot_lig_C	PF10437.9	gi|296242078|ref|YP_003649565.1|	-	1.7e-05	24.7	0.5	1.9e-05	24.5	0.5	1.1	1	0	0	1	1	1	1	Bacterial	lipoate	protein	ligase	C-terminus
ATP-grasp_5	PF13549.6	gi|296242080|ref|YP_003649567.1|	-	1.3e-72	243.8	0.1	1.5e-72	243.7	0.1	1.0	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.10	gi|296242080|ref|YP_003649567.1|	-	0.0051	16.4	0.0	0.01	15.4	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|296242080|ref|YP_003649567.1|	-	0.0058	16.2	0.0	0.014	15.0	0.0	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|296242080|ref|YP_003649567.1|	-	0.017	14.9	0.0	0.03	14.1	0.0	1.4	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
DUF3168	PF11367.8	gi|296242080|ref|YP_003649567.1|	-	0.11	12.7	0.2	0.57	10.4	0.2	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3168)
IF3_N	PF05198.16	gi|296242080|ref|YP_003649567.1|	-	0.13	12.6	0.0	6.6	7.1	0.0	2.7	2	1	1	3	3	3	0	Translation	initiation	factor	IF-3,	N-terminal	domain
LuxC	PF05893.14	gi|296242084|ref|YP_003649571.1|	-	3e-36	125.4	0.0	4.1e-36	124.9	0.0	1.1	1	0	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
Aldedh	PF00171.22	gi|296242084|ref|YP_003649571.1|	-	0.0019	16.8	0.0	0.0027	16.3	0.0	1.2	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
Pox_D5	PF03288.16	gi|296242084|ref|YP_003649571.1|	-	0.13	12.8	0.3	0.58	10.7	0.2	2.1	2	0	0	2	2	2	0	Poxvirus	D5	protein-like
Epimerase	PF01370.21	gi|296242085|ref|YP_003649572.1|	-	9.5e-38	130.0	0.0	1.4e-37	129.4	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|296242085|ref|YP_003649572.1|	-	1.6e-28	99.6	0.0	1.9e-28	99.3	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
GDP_Man_Dehyd	PF16363.5	gi|296242085|ref|YP_003649572.1|	-	1.3e-22	80.7	0.0	3.3e-22	79.3	0.0	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
NAD_binding_10	PF13460.6	gi|296242085|ref|YP_003649572.1|	-	2.3e-17	63.5	0.0	3.3e-17	63.0	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|296242085|ref|YP_003649572.1|	-	7.7e-16	58.0	0.0	1.3e-15	57.3	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|296242085|ref|YP_003649572.1|	-	1.4e-15	57.1	0.4	5.5e-10	38.8	0.0	3.1	2	1	1	3	3	3	2	Male	sterility	protein
NmrA	PF05368.13	gi|296242085|ref|YP_003649572.1|	-	3.9e-12	46.2	0.0	5.4e-12	45.8	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
Polysacc_synt_2	PF02719.15	gi|296242085|ref|YP_003649572.1|	-	1.6e-05	24.2	0.0	0.00041	19.6	0.1	2.5	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
HAD_2	PF13419.6	gi|296242086|ref|YP_003649573.1|	-	4.9e-42	144.0	0.0	5.7e-42	143.8	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|296242086|ref|YP_003649573.1|	-	1.3e-16	61.5	0.0	1.9e-14	54.5	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|296242086|ref|YP_003649573.1|	-	4.9e-10	40.1	0.0	6.5e-10	39.7	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|296242086|ref|YP_003649573.1|	-	2.2e-06	27.6	0.0	3.4e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
Acid_PPase	PF12689.7	gi|296242086|ref|YP_003649573.1|	-	0.00027	20.8	0.1	0.0037	17.1	0.0	2.2	2	1	0	2	2	2	1	Acid	Phosphatase
Hydrolase_6	PF13344.6	gi|296242086|ref|YP_003649573.1|	-	0.04	14.0	0.2	0.21	11.7	0.2	2.1	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.12	gi|296242086|ref|YP_003649573.1|	-	0.061	12.7	0.9	2.4	7.5	0.5	3.0	2	1	0	2	2	2	0	Putative	Phosphatase
ABC2_membrane	PF01061.24	gi|296242088|ref|YP_003649575.1|	-	1	8.8	32.2	0.065	12.6	26.4	1.9	1	1	1	2	2	2	0	ABC-2	type	transporter
ABC_tran	PF00005.27	gi|296242089|ref|YP_003649576.1|	-	4.2e-27	95.3	0.0	9.4e-27	94.2	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242089|ref|YP_003649576.1|	-	1e-11	45.2	3.7	1.3e-06	28.4	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|296242089|ref|YP_003649576.1|	-	0.0003	20.4	0.4	0.00069	19.3	0.2	1.8	2	0	0	2	2	1	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|296242089|ref|YP_003649576.1|	-	0.0003	21.2	0.8	0.0041	17.5	0.2	2.7	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|296242089|ref|YP_003649576.1|	-	0.002	18.1	0.0	0.0031	17.4	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_27	PF13514.6	gi|296242089|ref|YP_003649576.1|	-	0.0034	17.0	0.1	0.0086	15.7	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|296242089|ref|YP_003649576.1|	-	0.0042	17.6	0.7	0.015	15.8	0.2	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|296242089|ref|YP_003649576.1|	-	0.0051	16.6	0.8	0.21	11.2	0.1	2.4	3	0	0	3	3	3	1	AAA	ATPase	domain
DUF4162	PF13732.6	gi|296242089|ref|YP_003649576.1|	-	0.012	16.3	0.1	0.05	14.3	0.1	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
SRP54	PF00448.22	gi|296242089|ref|YP_003649576.1|	-	0.016	14.8	0.0	0.032	13.9	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_16	PF13191.6	gi|296242089|ref|YP_003649576.1|	-	0.017	15.5	0.1	0.035	14.5	0.1	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
MukB	PF04310.12	gi|296242089|ref|YP_003649576.1|	-	0.017	14.9	0.0	0.033	14.0	0.0	1.4	1	0	0	1	1	1	0	MukB	N-terminal
AAA_30	PF13604.6	gi|296242089|ref|YP_003649576.1|	-	0.02	14.6	0.1	0.042	13.6	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|296242089|ref|YP_003649576.1|	-	0.045	14.0	0.1	0.11	12.7	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|296242089|ref|YP_003649576.1|	-	0.064	13.8	0.2	0.32	11.6	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
SMC_N	PF02463.19	gi|296242089|ref|YP_003649576.1|	-	0.068	12.6	0.1	3.9	6.9	0.0	2.4	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|296242089|ref|YP_003649576.1|	-	0.11	12.8	0.5	0.93	9.8	0.3	2.7	1	1	1	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|296242089|ref|YP_003649576.1|	-	0.21	11.3	0.3	0.48	10.1	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
MatE	PF01554.18	gi|296242090|ref|YP_003649577.1|	-	4e-51	172.9	36.6	1.2e-26	93.3	9.6	2.6	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|296242090|ref|YP_003649577.1|	-	6.6e-08	32.7	9.4	6.6e-08	32.7	9.4	4.5	3	2	0	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
ECF-ribofla_trS	PF07155.12	gi|296242092|ref|YP_003649579.1|	-	4.3e-24	85.4	22.3	5.6e-19	68.8	10.0	2.1	2	0	0	2	2	2	2	ECF-type	riboflavin	transporter,	S	component
DctQ	PF04290.12	gi|296242092|ref|YP_003649579.1|	-	0.19	11.7	14.7	0.31	10.9	2.6	3.1	2	1	1	3	3	3	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
UPF0154	PF03672.13	gi|296242092|ref|YP_003649579.1|	-	0.46	10.5	3.6	1.8	8.7	0.1	2.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0154)
DUF1030	PF06270.11	gi|296242092|ref|YP_003649579.1|	-	0.95	9.3	5.2	3.5	7.4	0.1	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1030)
DUF4131	PF13567.6	gi|296242092|ref|YP_003649579.1|	-	6.2	6.4	7.9	0.35	10.5	0.8	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
ABC_tran	PF00005.27	gi|296242093|ref|YP_003649580.1|	-	9.4e-46	155.7	0.0	4e-23	82.4	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|296242093|ref|YP_003649580.1|	-	2.2e-16	60.5	1.8	5.3e-06	26.5	0.0	3.7	3	1	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|296242093|ref|YP_003649580.1|	-	1.1e-10	41.0	0.7	2.3e-05	24.0	0.1	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|296242093|ref|YP_003649580.1|	-	1.7e-10	40.7	0.1	0.0074	15.8	0.0	4.0	4	0	0	4	4	4	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|296242093|ref|YP_003649580.1|	-	2.7e-09	37.8	1.7	0.00043	20.8	0.2	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|296242093|ref|YP_003649580.1|	-	4.9e-07	30.1	1.1	0.018	15.3	0.1	3.1	2	2	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|296242093|ref|YP_003649580.1|	-	1.2e-06	29.0	0.8	0.013	15.9	0.1	2.7	3	1	0	3	3	2	2	AAA	ATPase	domain
AAA_15	PF13175.6	gi|296242093|ref|YP_003649580.1|	-	1.3e-06	28.4	0.1	0.0055	16.5	0.1	3.0	2	1	1	3	3	3	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|296242093|ref|YP_003649580.1|	-	4.9e-06	26.6	0.9	0.013	15.4	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
AAA_18	PF13238.6	gi|296242093|ref|YP_003649580.1|	-	1e-05	26.1	0.0	0.055	14.0	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|296242093|ref|YP_003649580.1|	-	1.6e-05	24.8	3.2	0.065	13.0	0.6	2.8	3	0	0	3	3	3	2	AAA	domain
Rad17	PF03215.15	gi|296242093|ref|YP_003649580.1|	-	2.2e-05	24.5	0.5	0.26	11.2	0.1	2.6	3	0	0	3	3	2	2	Rad17	P-loop	domain
NTPase_1	PF03266.15	gi|296242093|ref|YP_003649580.1|	-	9.4e-05	22.4	8.2	0.17	11.8	0.8	4.4	5	0	0	5	5	5	2	NTPase
NACHT	PF05729.12	gi|296242093|ref|YP_003649580.1|	-	0.00035	20.5	4.3	0.057	13.3	0.3	2.6	2	0	0	2	2	2	2	NACHT	domain
AAA_33	PF13671.6	gi|296242093|ref|YP_003649580.1|	-	0.00041	20.5	0.6	1.1	9.4	0.3	2.8	3	0	0	3	3	2	2	AAA	domain
T2SSE	PF00437.20	gi|296242093|ref|YP_003649580.1|	-	0.00044	19.4	0.7	0.24	10.4	0.0	2.2	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
RNA_helicase	PF00910.22	gi|296242093|ref|YP_003649580.1|	-	0.0006	20.2	0.2	2	8.8	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
AAA	PF00004.29	gi|296242093|ref|YP_003649580.1|	-	0.0012	19.3	0.4	1.8	9.0	0.0	2.6	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
PRK	PF00485.18	gi|296242093|ref|YP_003649580.1|	-	0.0019	18.0	0.0	0.76	9.5	0.0	2.6	3	0	0	3	3	3	1	Phosphoribulokinase	/	Uridine	kinase	family
MMR_HSR1	PF01926.23	gi|296242093|ref|YP_003649580.1|	-	0.002	18.2	1.9	0.46	10.6	0.1	3.0	4	0	0	4	4	3	1	50S	ribosome-binding	GTPase
AAA_25	PF13481.6	gi|296242093|ref|YP_003649580.1|	-	0.0021	17.7	0.5	0.59	9.7	0.0	2.7	3	0	0	3	3	2	1	AAA	domain
Zeta_toxin	PF06414.12	gi|296242093|ref|YP_003649580.1|	-	0.0029	16.9	0.6	0.69	9.2	0.0	2.3	2	0	0	2	2	2	1	Zeta	toxin
TsaE	PF02367.17	gi|296242093|ref|YP_003649580.1|	-	0.0032	17.5	1.1	0.39	10.7	0.1	2.6	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
cobW	PF02492.19	gi|296242093|ref|YP_003649580.1|	-	0.0041	16.7	6.2	0.43	10.2	0.8	2.3	2	0	0	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_24	PF13479.6	gi|296242093|ref|YP_003649580.1|	-	0.0051	16.6	2.6	0.78	9.4	0.1	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_28	PF13521.6	gi|296242093|ref|YP_003649580.1|	-	0.0066	16.7	2.6	4.8	7.4	0.1	3.3	4	0	0	4	4	3	0	AAA	domain
SbcCD_C	PF13558.6	gi|296242093|ref|YP_003649580.1|	-	0.0072	16.5	0.1	0.27	11.5	0.0	3.0	2	2	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
Mg_chelatase	PF01078.21	gi|296242093|ref|YP_003649580.1|	-	0.011	15.2	0.3	1.5	8.2	0.1	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
ATPase_2	PF01637.18	gi|296242093|ref|YP_003649580.1|	-	0.027	14.4	4.5	2.7	7.9	0.1	2.5	3	0	0	3	3	2	0	ATPase	domain	predominantly	from	Archaea
dNK	PF01712.19	gi|296242093|ref|YP_003649580.1|	-	0.027	14.3	2.7	1.5	8.6	0.2	2.3	2	0	0	2	2	2	0	Deoxynucleoside	kinase
ATP_bind_1	PF03029.17	gi|296242093|ref|YP_003649580.1|	-	0.029	14.2	2.4	2.4	7.9	0.3	2.3	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
NB-ARC	PF00931.22	gi|296242093|ref|YP_003649580.1|	-	0.031	13.5	3.1	2.1	7.4	0.0	2.6	3	0	0	3	3	2	0	NB-ARC	domain
AAA_5	PF07728.14	gi|296242093|ref|YP_003649580.1|	-	0.036	14.1	5.1	3.2	7.7	0.3	2.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
APS_kinase	PF01583.20	gi|296242093|ref|YP_003649580.1|	-	0.038	13.9	0.2	8.4	6.3	0.0	2.4	2	0	0	2	2	2	0	Adenylylsulphate	kinase
FtsK_SpoIIIE	PF01580.18	gi|296242093|ref|YP_003649580.1|	-	0.046	13.1	1.0	0.47	9.8	0.0	2.2	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
VirE	PF05272.11	gi|296242093|ref|YP_003649580.1|	-	0.081	12.7	0.1	2.2	7.9	0.0	2.3	2	0	0	2	2	2	0	Virulence-associated	protein	E
MobB	PF03205.14	gi|296242093|ref|YP_003649580.1|	-	0.092	12.6	4.4	0.61	10.0	0.3	2.4	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Cytidylate_kin	PF02224.18	gi|296242093|ref|YP_003649580.1|	-	0.092	12.5	0.4	2.2	7.9	0.1	2.2	2	0	0	2	2	2	0	Cytidylate	kinase
Roc	PF08477.13	gi|296242093|ref|YP_003649580.1|	-	0.097	12.9	1.4	3.2	8.0	0.2	2.8	3	0	0	3	3	3	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
KAP_NTPase	PF07693.14	gi|296242093|ref|YP_003649580.1|	-	0.16	11.1	0.1	2.2	7.4	0.0	2.2	2	0	0	2	2	2	0	KAP	family	P-loop	domain
PhoH	PF02562.16	gi|296242093|ref|YP_003649580.1|	-	0.17	11.3	0.7	13	5.2	0.1	2.2	2	0	0	2	2	2	0	PhoH-like	protein
DnaB_C	PF03796.15	gi|296242093|ref|YP_003649580.1|	-	0.17	11.2	0.0	2	7.7	0.0	2.4	3	0	0	3	3	3	0	DnaB-like	helicase	C	terminal	domain
DLIC	PF05783.11	gi|296242093|ref|YP_003649580.1|	-	0.2	10.4	2.5	4.3	6.1	0.0	2.1	2	0	0	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
AAA_14	PF13173.6	gi|296242093|ref|YP_003649580.1|	-	0.22	11.6	3.7	3.4	7.7	0.1	3.0	4	0	0	4	4	2	0	AAA	domain
AAA_13	PF13166.6	gi|296242093|ref|YP_003649580.1|	-	0.29	9.7	0.5	19	3.8	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
FeoB_N	PF02421.18	gi|296242093|ref|YP_003649580.1|	-	0.3	10.6	1.5	0.92	9.0	0.1	2.2	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
CLP1_P	PF16575.5	gi|296242093|ref|YP_003649580.1|	-	0.36	10.6	1.3	22	4.7	0.1	2.6	3	0	0	3	3	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
MeaB	PF03308.16	gi|296242093|ref|YP_003649580.1|	-	0.59	9.1	2.4	1.4	7.9	0.2	2.1	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
PduV-EutP	PF10662.9	gi|296242093|ref|YP_003649580.1|	-	0.98	9.2	2.4	2.9	7.6	0.2	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_19	PF13245.6	gi|296242093|ref|YP_003649580.1|	-	1.3	9.3	6.3	3.1	8.1	0.3	2.7	2	1	0	2	2	2	0	AAA	domain
DAP3	PF10236.9	gi|296242093|ref|YP_003649580.1|	-	1.8	7.7	3.0	17	4.5	0.3	2.3	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
DUF87	PF01935.17	gi|296242093|ref|YP_003649580.1|	-	2.3	8.3	5.7	2.6	8.1	0.3	2.7	3	0	0	3	3	2	0	Helicase	HerA,	central	domain
SRP54	PF00448.22	gi|296242093|ref|YP_003649580.1|	-	3.6	7.2	5.0	11	5.5	0.7	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
ABC_ATPase	PF09818.9	gi|296242093|ref|YP_003649580.1|	-	3.6	6.3	4.3	13	4.4	1.2	2.2	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
CbiA	PF01656.23	gi|296242093|ref|YP_003649580.1|	-	3.8	7.6	4.4	4.5	7.3	0.3	2.4	2	0	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF3810	PF12725.7	gi|296242094|ref|YP_003649581.1|	-	6.4	6.0	10.6	0.34	10.2	3.7	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3810)
PmbA_TldD	PF01523.16	gi|296242095|ref|YP_003649582.1|	-	1.3e-58	199.1	0.2	1.6e-58	198.8	0.2	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.16	gi|296242096|ref|YP_003649583.1|	-	2.6e-43	148.9	0.1	5.9e-43	147.7	0.0	1.6	2	0	0	2	2	2	1	Putative	modulator	of	DNA	gyrase
Clr5	PF14420.6	gi|296242096|ref|YP_003649583.1|	-	0.015	15.5	0.8	4.4	7.6	0.9	2.4	2	0	0	2	2	2	0	Clr5	domain
FlaC_arch	PF05377.11	gi|296242096|ref|YP_003649583.1|	-	0.15	12.5	0.3	0.77	10.2	0.0	2.4	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
BPL_LplA_LipB	PF03099.19	gi|296242097|ref|YP_003649584.1|	-	2.6e-09	37.1	0.4	1.1e-08	35.0	0.4	1.9	1	1	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
BPL_C	PF02237.17	gi|296242097|ref|YP_003649584.1|	-	8.3e-06	25.6	0.1	1.4e-05	24.9	0.1	1.4	1	0	0	1	1	1	1	Biotin	protein	ligase	C	terminal	domain
CxxCxxCC	PF03692.15	gi|296242098|ref|YP_003649585.1|	-	5.8e-10	39.7	0.3	9.5e-10	39.0	0.3	1.4	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
CTP_transf_like	PF01467.26	gi|296242099|ref|YP_003649586.1|	-	2.2e-12	47.4	0.0	8.4e-12	45.5	0.0	1.8	1	1	0	1	1	1	1	Cytidylyltransferase-like
HIGH_NTase1	PF05636.11	gi|296242099|ref|YP_003649586.1|	-	5.2e-05	22.6	0.0	0.0098	15.1	0.0	2.1	2	0	0	2	2	2	2	HIGH	Nucleotidyl	Transferase
TrkA_N	PF02254.18	gi|296242099|ref|YP_003649586.1|	-	0.062	13.6	0.0	0.11	12.8	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
Peptidase_M50	PF02163.22	gi|296242100|ref|YP_003649587.1|	-	4.5e-06	26.1	11.9	9.9e-05	21.7	0.3	3.1	1	1	1	2	2	2	2	Peptidase	family	M50
Vps23_core	PF09454.10	gi|296242101|ref|YP_003649588.1|	-	0.0018	18.2	0.0	0.0028	17.6	0.0	1.4	1	0	0	1	1	1	1	Vps23	core	domain
VPS28	PF03997.12	gi|296242101|ref|YP_003649588.1|	-	0.01	15.5	0.2	0.018	14.7	0.2	1.3	1	0	0	1	1	1	0	VPS28	protein
SWIRM	PF04433.17	gi|296242101|ref|YP_003649588.1|	-	0.13	12.7	0.8	0.23	11.9	0.4	1.7	2	0	0	2	2	2	0	SWIRM	domain
LolA_like	PF17131.4	gi|296242103|ref|YP_003649590.1|	-	0.027	14.2	0.0	0.031	14.0	0.0	1.1	1	0	0	1	1	1	0	Outer	membrane	lipoprotein-sorting	protein
HD	PF01966.22	gi|296242104|ref|YP_003649591.1|	-	4.6e-13	49.5	2.0	6.2e-13	49.0	1.0	1.8	2	0	0	2	2	2	1	HD	domain
TetR_C_19	PF17924.1	gi|296242104|ref|YP_003649591.1|	-	0.0095	16.5	0.4	0.2	12.2	0.1	2.6	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
HDOD	PF08668.12	gi|296242104|ref|YP_003649591.1|	-	0.046	13.2	0.0	0.17	11.4	0.0	1.9	2	0	0	2	2	2	0	HDOD	domain
HTH_24	PF13412.6	gi|296242105|ref|YP_003649592.1|	-	4.8e-05	22.8	0.1	5.7e-05	22.6	0.1	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|296242105|ref|YP_003649592.1|	-	0.00018	21.4	0.1	0.00023	21.1	0.1	1.1	1	0	0	1	1	1	1	HTH	domain
Sigma70_r4_2	PF08281.12	gi|296242105|ref|YP_003649592.1|	-	0.00032	20.3	0.1	0.00079	19.1	0.0	1.6	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_IclR	PF09339.10	gi|296242105|ref|YP_003649592.1|	-	0.0049	16.6	0.0	0.0061	16.3	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|296242105|ref|YP_003649592.1|	-	0.0067	16.4	0.0	0.0073	16.3	0.0	1.1	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
FaeA	PF04703.12	gi|296242105|ref|YP_003649592.1|	-	0.009	16.4	0.0	0.011	16.1	0.0	1.1	1	0	0	1	1	1	1	FaeA-like	protein
HTH_AsnC-type	PF13404.6	gi|296242105|ref|YP_003649592.1|	-	0.015	15.2	0.0	0.017	14.9	0.0	1.2	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|296242105|ref|YP_003649592.1|	-	0.02	15.0	0.0	0.022	14.8	0.0	1.1	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_23	PF13384.6	gi|296242105|ref|YP_003649592.1|	-	0.029	14.2	0.0	0.035	13.9	0.0	1.2	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_29	PF13551.6	gi|296242105|ref|YP_003649592.1|	-	0.038	14.0	0.0	0.045	13.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_40	PF14493.6	gi|296242105|ref|YP_003649592.1|	-	0.039	14.4	0.0	0.059	13.8	0.0	1.3	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|296242105|ref|YP_003649592.1|	-	0.043	13.2	0.0	0.064	12.7	0.0	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
GerE	PF00196.19	gi|296242105|ref|YP_003649592.1|	-	0.045	13.3	0.0	0.083	12.5	0.0	1.5	1	1	1	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_5	PF01022.20	gi|296242105|ref|YP_003649592.1|	-	0.059	13.2	0.0	0.082	12.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF2089	PF09862.9	gi|296242105|ref|YP_003649592.1|	-	0.079	13.0	0.0	0.13	12.3	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
DUF2582	PF10771.9	gi|296242105|ref|YP_003649592.1|	-	0.085	13.0	0.1	0.13	12.4	0.0	1.3	2	0	0	2	2	1	0	Winged	helix-turn-helix	domain	(DUF2582)
Rrf2	PF02082.20	gi|296242105|ref|YP_003649592.1|	-	0.091	13.1	0.1	0.11	12.8	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_30	PF13556.6	gi|296242105|ref|YP_003649592.1|	-	0.092	12.6	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
GntR	PF00392.21	gi|296242105|ref|YP_003649592.1|	-	0.11	12.1	0.0	0.2	11.3	0.0	1.4	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
ACT	PF01842.25	gi|296242106|ref|YP_003649593.1|	-	4.1e-05	23.3	0.0	7.9e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	ACT	domain
Thiamine_BP	PF01910.17	gi|296242106|ref|YP_003649593.1|	-	0.0024	17.7	0.0	0.0059	16.5	0.0	1.6	1	0	0	1	1	1	1	Thiamine-binding	protein
ACT_4	PF13291.6	gi|296242106|ref|YP_003649593.1|	-	0.0026	18.3	0.2	0.0071	16.9	0.1	1.8	2	0	0	2	2	2	1	ACT	domain
Ykof	PF07615.11	gi|296242106|ref|YP_003649593.1|	-	0.092	13.2	0.0	0.27	11.7	0.0	1.7	2	0	0	2	2	2	0	YKOF-related	Family
POT1PC	PF16686.5	gi|296242106|ref|YP_003649593.1|	-	0.19	11.6	0.0	0.31	10.9	0.0	1.3	1	0	0	1	1	1	0	ssDNA-binding	domain	of	telomere	protection	protein
Inhibitor_G39P	PF11417.8	gi|296242107|ref|YP_003649594.1|	-	0.087	13.4	0.3	0.31	11.6	0.3	1.9	1	0	0	1	1	1	0	Loader	and	inhibitor	of	phage	G40P
IL4_i_Ig	PF18258.1	gi|296242107|ref|YP_003649594.1|	-	0.19	11.9	2.4	1.3	9.3	0.1	2.8	1	1	1	2	2	2	0	Interleukin-4	inducing	immunoglobulin-binding	domain
DUF5466	PF17554.2	gi|296242107|ref|YP_003649594.1|	-	0.57	10.4	0.0	0.57	10.4	0.0	2.6	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5466)
Sigma_reg_N	PF13800.6	gi|296242108|ref|YP_003649595.1|	-	0.52	10.6	3.4	0.24	11.7	0.7	1.7	2	0	0	2	2	2	0	Sigma	factor	regulator	N-terminal
HRG	PF16954.5	gi|296242108|ref|YP_003649595.1|	-	0.74	10.3	4.8	4.2	7.8	4.8	2.2	1	1	0	1	1	1	0	Haem-transporter,	endosomal/lysosomal,	haem-responsive	gene
DUF2341	PF10102.9	gi|296242110|ref|YP_003649597.1|	-	5.4e-17	62.2	0.2	2.7e-16	59.9	0.2	2.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2341)
T2SSF	PF00482.23	gi|296242113|ref|YP_003649600.1|	-	1.1e-18	67.4	7.6	7.1e-10	38.9	0.1	3.7	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
T2SSE	PF00437.20	gi|296242114|ref|YP_003649601.1|	-	2.4e-50	171.1	0.0	3.8e-50	170.5	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|296242114|ref|YP_003649601.1|	-	7.9e-05	23.2	0.0	0.00027	21.5	0.0	1.9	1	0	0	1	1	1	1	ABC	transporter
PIF1	PF05970.14	gi|296242114|ref|YP_003649601.1|	-	0.0035	16.5	0.1	0.0059	15.8	0.1	1.2	1	0	0	1	1	1	1	PIF1-like	helicase
AAA_16	PF13191.6	gi|296242114|ref|YP_003649601.1|	-	0.0039	17.6	0.0	0.007	16.8	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|296242114|ref|YP_003649601.1|	-	0.0045	16.7	0.2	0.012	15.3	0.2	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.6	gi|296242114|ref|YP_003649601.1|	-	0.0049	17.1	0.1	0.027	14.7	0.2	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|296242114|ref|YP_003649601.1|	-	0.0054	16.3	0.1	0.01	15.4	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_21	PF13304.6	gi|296242114|ref|YP_003649601.1|	-	0.023	14.5	0.1	1.9	8.2	0.0	2.3	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|296242114|ref|YP_003649601.1|	-	0.042	13.8	0.1	0.078	12.9	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|296242114|ref|YP_003649601.1|	-	0.051	14.1	0.1	0.051	14.1	0.1	1.7	2	0	0	2	2	1	0	AAA	domain
DEAD	PF00270.29	gi|296242114|ref|YP_003649601.1|	-	0.074	12.8	0.1	0.22	11.3	0.0	1.8	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_30	PF13604.6	gi|296242114|ref|YP_003649601.1|	-	0.079	12.7	0.2	0.15	11.8	0.2	1.4	1	0	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|296242114|ref|YP_003649601.1|	-	0.09	12.1	0.1	0.2	10.9	0.1	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
CbiA	PF01656.23	gi|296242114|ref|YP_003649601.1|	-	0.094	12.8	0.0	0.5	10.4	0.0	2.0	2	1	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_19	PF13245.6	gi|296242114|ref|YP_003649601.1|	-	0.15	12.4	1.1	0.35	11.2	0.6	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|296242114|ref|YP_003649601.1|	-	0.15	12.3	0.0	1	9.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
DUF2226	PF09987.9	gi|296242115|ref|YP_003649602.1|	-	0.00093	18.6	0.7	0.0013	18.1	0.4	1.3	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2226)
ABM	PF03992.16	gi|296242115|ref|YP_003649602.1|	-	0.082	13.0	0.0	0.21	11.7	0.0	1.7	1	0	0	1	1	1	0	Antibiotic	biosynthesis	monooxygenase
DHHA1	PF02272.19	gi|296242116|ref|YP_003649603.1|	-	2.7e-10	40.8	0.5	5.2e-10	39.9	0.3	1.5	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|296242116|ref|YP_003649603.1|	-	0.12	12.6	0.0	0.22	11.8	0.0	1.4	1	0	0	1	1	1	0	DHH	family
CoA_binding_2	PF13380.6	gi|296242116|ref|YP_003649603.1|	-	0.14	12.7	0.0	0.27	11.7	0.0	1.4	1	0	0	1	1	1	0	CoA	binding	domain
DUF429	PF04250.13	gi|296242117|ref|YP_003649604.1|	-	1.4e-05	25.0	0.0	0.00013	21.8	0.0	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF429)
Slx4	PF09494.10	gi|296242117|ref|YP_003649604.1|	-	0.14	12.1	0.0	0.61	10.1	0.0	2.0	3	0	0	3	3	3	0	Slx4	endonuclease
FAD_binding_2	PF00890.24	gi|296242118|ref|YP_003649605.1|	-	5.6e-11	42.2	1.3	8.6e-07	28.4	1.7	2.2	2	0	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|296242118|ref|YP_003649605.1|	-	5.5e-10	39.4	4.3	0.00042	20.0	1.6	2.2	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|296242118|ref|YP_003649605.1|	-	1.1e-08	34.9	0.8	2.9e-08	33.5	0.8	1.6	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|296242118|ref|YP_003649605.1|	-	4.9e-08	32.5	0.8	1.6e-07	30.8	1.0	1.8	2	0	0	2	2	2	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|296242118|ref|YP_003649605.1|	-	6.6e-08	32.0	0.0	7.8e-07	28.5	0.0	2.0	2	0	0	2	2	2	1	Lycopene	cyclase	protein
FAD_binding_3	PF01494.19	gi|296242118|ref|YP_003649605.1|	-	3.2e-07	29.9	1.5	7.4e-05	22.2	0.2	2.5	3	0	0	3	3	3	2	FAD	binding	domain
GIDA	PF01134.22	gi|296242118|ref|YP_003649605.1|	-	7.9e-07	28.5	0.0	1.1e-06	28.0	0.0	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Trp_halogenase	PF04820.14	gi|296242118|ref|YP_003649605.1|	-	8.5e-07	28.2	0.1	0.013	14.4	0.0	2.4	3	0	0	3	3	3	2	Tryptophan	halogenase
Pyr_redox_2	PF07992.14	gi|296242118|ref|YP_003649605.1|	-	1.5e-06	27.7	1.3	3.5e-06	26.5	1.4	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|296242118|ref|YP_003649605.1|	-	9.4e-06	26.1	2.4	0.00013	22.5	0.2	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|296242118|ref|YP_003649605.1|	-	0.00015	20.6	1.2	0.00036	19.3	1.3	1.6	2	0	0	2	2	2	1	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|296242118|ref|YP_003649605.1|	-	0.00084	18.7	0.1	0.0016	17.7	0.1	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_8	PF13450.6	gi|296242118|ref|YP_003649605.1|	-	0.0038	17.4	0.4	0.0038	17.4	0.4	2.3	3	0	0	3	3	1	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.18	gi|296242118|ref|YP_003649605.1|	-	0.0053	16.7	0.4	0.0098	15.8	0.4	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
RMI1_C	PF16099.5	gi|296242118|ref|YP_003649605.1|	-	0.01	15.7	0.0	0.019	14.8	0.0	1.4	1	0	0	1	1	1	0	Recq-mediated	genome	instability	protein	1,	C-terminal	OB-fold
Pyr_redox_3	PF13738.6	gi|296242118|ref|YP_003649605.1|	-	0.016	14.5	1.2	0.034	13.4	1.2	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|296242118|ref|YP_003649605.1|	-	0.025	14.1	0.4	0.074	12.6	0.4	1.7	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
PYNP_C	PF07831.13	gi|296242119|ref|YP_003649606.1|	-	1.2e-14	53.7	0.2	3.1e-13	49.2	0.0	2.8	3	0	0	3	3	3	1	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
Glycos_transf_3	PF00591.21	gi|296242119|ref|YP_003649606.1|	-	2.7e-11	43.6	1.8	1.6e-10	41.0	1.8	2.3	1	1	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|296242119|ref|YP_003649606.1|	-	4.1e-09	36.2	0.1	2.5e-08	33.6	0.0	2.4	3	0	0	3	3	3	1	Glycosyl	transferase	family,	helical	bundle	domain
CDC48_N	PF02359.18	gi|296242119|ref|YP_003649606.1|	-	0.0088	16.2	0.0	0.022	14.9	0.0	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
Molydop_binding	PF01568.21	gi|296242119|ref|YP_003649606.1|	-	0.021	14.9	0.0	0.72	9.9	0.0	2.6	2	1	1	3	3	3	0	Molydopterin	dinucleotide	binding	domain
DUF2254	PF10011.9	gi|296242119|ref|YP_003649606.1|	-	0.043	12.6	0.0	0.068	12.0	0.0	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2254)
DDE_Tnp_IS1595	PF12762.7	gi|296242119|ref|YP_003649606.1|	-	0.16	12.0	0.0	8.9	6.3	0.0	2.2	2	0	0	2	2	2	0	ISXO2-like	transposase	domain
Amidohydro_3	PF07969.11	gi|296242120|ref|YP_003649607.1|	-	1.1e-56	193.3	0.0	1.4e-56	193.0	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|296242120|ref|YP_003649607.1|	-	5.8e-07	29.1	0.1	0.028	13.8	0.0	3.2	3	0	0	3	3	3	3	Amidohydrolase	family
PGM_PMM_I	PF02878.16	gi|296242122|ref|YP_003649609.1|	-	1.8e-29	102.2	0.0	7.1e-29	100.3	0.0	1.9	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|296242122|ref|YP_003649609.1|	-	1.6e-19	70.4	0.0	5.6e-19	68.7	0.0	1.9	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|296242122|ref|YP_003649609.1|	-	6e-12	45.6	0.0	1.4e-11	44.4	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.16	gi|296242122|ref|YP_003649609.1|	-	0.00018	21.7	0.2	0.00045	20.4	0.0	1.7	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
AdoMet_dc	PF02675.15	gi|296242123|ref|YP_003649610.1|	-	1.8e-34	118.2	0.0	2e-34	118.0	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
Lycopene_cycl	PF05834.12	gi|296242124|ref|YP_003649611.1|	-	8.4e-07	28.4	0.0	6.8e-06	25.4	0.0	2.0	1	1	0	1	1	1	1	Lycopene	cyclase	protein
DAO	PF01266.24	gi|296242124|ref|YP_003649611.1|	-	9.6e-05	22.1	0.0	0.00014	21.6	0.0	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|296242124|ref|YP_003649611.1|	-	0.0001	21.7	0.0	0.015	14.6	0.0	2.5	3	0	0	3	3	3	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|296242124|ref|YP_003649611.1|	-	0.00082	18.7	0.0	0.0011	18.3	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|296242124|ref|YP_003649611.1|	-	0.0011	17.8	0.0	0.0018	17.1	0.0	1.3	1	0	0	1	1	1	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|296242124|ref|YP_003649611.1|	-	0.0012	19.0	0.0	0.003	17.7	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|296242124|ref|YP_003649611.1|	-	0.0095	15.2	0.3	0.016	14.4	0.3	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|296242124|ref|YP_003649611.1|	-	0.051	12.8	0.0	0.064	12.5	0.0	1.2	1	0	0	1	1	1	0	Thi4	family
FAD_binding_2	PF00890.24	gi|296242124|ref|YP_003649611.1|	-	0.18	10.9	0.0	0.25	10.4	0.0	1.1	1	0	0	1	1	1	0	FAD	binding	domain
HycI	PF01750.18	gi|296242125|ref|YP_003649612.1|	-	2.6e-09	37.0	0.0	3.6e-09	36.5	0.0	1.2	1	0	0	1	1	1	1	Hydrogenase	maturation	protease
TPP_enzyme_C	PF02775.21	gi|296242126|ref|YP_003649613.1|	-	3.4e-23	82.1	0.1	4.7e-23	81.7	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|296242126|ref|YP_003649613.1|	-	0.19	10.9	0.0	0.3	10.2	0.0	1.2	1	0	0	1	1	1	0	1-deoxy-D-xylulose-5-phosphate	synthase
POR_N	PF01855.19	gi|296242127|ref|YP_003649614.1|	-	3.6e-75	252.7	0.6	5e-75	252.2	0.6	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|296242127|ref|YP_003649614.1|	-	1.1e-30	105.9	0.1	3e-30	104.5	0.0	1.8	2	0	0	2	2	2	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|296242127|ref|YP_003649614.1|	-	1.5e-05	24.9	0.0	5.4e-05	23.1	0.0	1.9	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
Fer4	PF00037.27	gi|296242128|ref|YP_003649615.1|	-	3e-14	52.1	12.8	7.1e-08	31.9	3.9	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|296242128|ref|YP_003649615.1|	-	9.1e-11	41.7	9.1	1.2e-10	41.4	9.1	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|296242128|ref|YP_003649615.1|	-	6.4e-10	38.7	12.3	4.2e-05	23.4	3.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|296242128|ref|YP_003649615.1|	-	1.8e-08	34.4	6.9	2.4e-08	34.0	6.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|296242128|ref|YP_003649615.1|	-	2.8e-07	31.3	7.6	0.00098	20.0	2.1	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|296242128|ref|YP_003649615.1|	-	3.2e-07	30.3	21.4	1.3e-05	25.2	11.1	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296242128|ref|YP_003649615.1|	-	1.4e-06	28.0	10.9	0.00018	21.4	2.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|296242128|ref|YP_003649615.1|	-	1.6e-06	28.6	10.7	7.8e-06	26.4	11.1	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|296242128|ref|YP_003649615.1|	-	1.9e-05	25.1	9.8	0.00086	19.8	1.4	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|296242128|ref|YP_003649615.1|	-	0.0009	19.9	12.7	0.12	13.1	1.4	3.1	2	1	1	3	3	3	3	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.7	gi|296242128|ref|YP_003649615.1|	-	0.0031	17.9	11.0	0.095	13.3	0.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|296242128|ref|YP_003649615.1|	-	0.0059	17.0	12.3	0.053	14.0	2.4	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|296242128|ref|YP_003649615.1|	-	0.019	15.5	11.5	0.34	11.5	2.8	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|296242128|ref|YP_003649615.1|	-	0.43	10.8	6.6	1.6	9.0	6.7	1.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|296242128|ref|YP_003649615.1|	-	1.8	9.4	12.0	0.35	11.7	2.3	2.1	1	1	2	3	3	2	0	4Fe-4S	dicluster	domain
POR	PF01558.18	gi|296242129|ref|YP_003649616.1|	-	2.8e-37	128.5	0.0	3.3e-37	128.3	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4	PF00037.27	gi|296242130|ref|YP_003649617.1|	-	1.9e-11	43.3	14.1	8.8e-06	25.3	2.7	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|296242130|ref|YP_003649617.1|	-	4.4e-11	43.2	18.5	5.9e-08	33.2	9.5	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296242130|ref|YP_003649617.1|	-	3.5e-10	39.8	6.5	3e-05	24.0	0.8	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|296242130|ref|YP_003649617.1|	-	1.6e-09	37.5	10.5	0.00013	22.2	1.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|296242130|ref|YP_003649617.1|	-	2.8e-09	37.0	28.4	3.3e-06	27.2	9.6	1.8	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|296242130|ref|YP_003649617.1|	-	6.6e-09	35.5	13.1	0.00024	21.0	2.2	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|296242130|ref|YP_003649617.1|	-	1.2e-08	34.9	8.0	1.6e-08	34.5	8.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|296242130|ref|YP_003649617.1|	-	1.3e-07	31.9	5.0	0.0026	18.2	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296242130|ref|YP_003649617.1|	-	3.7e-07	29.8	13.9	0.002	18.1	3.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|296242130|ref|YP_003649617.1|	-	8.6e-06	26.6	10.9	0.03	15.3	11.7	2.2	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|296242130|ref|YP_003649617.1|	-	9e-06	26.1	10.9	0.0016	19.0	11.8	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|296242130|ref|YP_003649617.1|	-	6.5e-05	23.6	14.0	0.03	15.3	2.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|296242130|ref|YP_003649617.1|	-	0.00064	20.2	10.2	0.027	15.0	1.1	2.2	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_22	PF17179.4	gi|296242130|ref|YP_003649617.1|	-	0.0011	19.7	4.1	0.7	10.8	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|296242130|ref|YP_003649617.1|	-	0.011	16.5	5.4	1.2	9.9	0.3	2.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|296242130|ref|YP_003649617.1|	-	0.038	14.2	9.3	1.8	8.8	9.3	2.0	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Exo5	PF09810.9	gi|296242130|ref|YP_003649617.1|	-	0.34	10.3	0.5	0.46	9.9	0.5	1.1	1	0	0	1	1	1	0	Exonuclease	V	-	a	5'	deoxyribonuclease
POR_N	PF01855.19	gi|296242131|ref|YP_003649618.1|	-	1.8e-64	217.6	0.1	2.2e-64	217.3	0.1	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|296242131|ref|YP_003649618.1|	-	6.7e-15	55.3	0.0	1.2e-14	54.4	0.0	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|296242131|ref|YP_003649618.1|	-	2.5e-06	27.4	0.0	5e-06	26.4	0.0	1.5	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|296242131|ref|YP_003649618.1|	-	0.045	13.4	0.1	0.069	12.8	0.1	1.3	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|296242132|ref|YP_003649619.1|	-	5.4e-32	110.7	0.3	1.4e-31	109.4	0.1	1.7	1	1	1	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR	PF01558.18	gi|296242133|ref|YP_003649620.1|	-	3.1e-28	99.0	0.0	3.7e-28	98.8	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TFX_C	PF14601.6	gi|296242134|ref|YP_003649621.1|	-	3.6e-22	78.1	0.2	6e-22	77.4	0.2	1.3	1	0	0	1	1	1	1	DNA_binding	protein,	TFX,	C-term
Sigma70_r4	PF04545.16	gi|296242134|ref|YP_003649621.1|	-	7.2e-09	35.0	1.9	1e-08	34.6	0.9	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
GerE	PF00196.19	gi|296242134|ref|YP_003649621.1|	-	1.1e-05	24.8	0.8	1.8e-05	24.2	0.8	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_7	PF02796.15	gi|296242134|ref|YP_003649621.1|	-	9.1e-05	22.5	0.1	0.00025	21.1	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_38	PF13936.6	gi|296242134|ref|YP_003649621.1|	-	0.00011	21.9	0.2	0.00023	20.9	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|296242134|ref|YP_003649621.1|	-	0.00011	22.1	1.0	0.00028	20.8	1.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|296242134|ref|YP_003649621.1|	-	0.0004	20.0	1.0	0.00097	18.8	0.3	2.0	2	1	0	2	2	2	1	Sigma-70,	region	4
HTH_37	PF13744.6	gi|296242134|ref|YP_003649621.1|	-	0.00048	20.0	0.1	0.001	19.0	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|296242134|ref|YP_003649621.1|	-	0.0015	18.5	1.3	0.0024	17.9	1.3	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_23	PF13384.6	gi|296242134|ref|YP_003649621.1|	-	0.006	16.4	0.0	0.02	14.7	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
RepB	PF07506.11	gi|296242134|ref|YP_003649621.1|	-	0.0098	16.0	0.1	0.014	15.5	0.1	1.2	1	0	0	1	1	1	1	RepB	plasmid	partitioning	protein
UN_NPL4	PF11543.8	gi|296242134|ref|YP_003649621.1|	-	0.032	14.7	0.0	0.052	14.0	0.0	1.3	1	0	0	1	1	1	0	Nuclear	pore	localisation	protein	NPL4
EamA	PF00892.20	gi|296242135|ref|YP_003649622.1|	-	3.1e-20	72.8	17.9	3.5e-20	72.6	17.9	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
TPT	PF03151.16	gi|296242135|ref|YP_003649622.1|	-	0.0029	17.0	9.3	0.0033	16.8	9.3	1.2	1	0	0	1	1	1	1	Triose-phosphate	Transporter	family
UAA	PF08449.11	gi|296242135|ref|YP_003649622.1|	-	0.0044	16.3	8.6	0.0054	16.0	8.3	1.4	1	1	0	1	1	1	1	UAA	transporter	family
DUF2299	PF10061.9	gi|296242136|ref|YP_003649623.1|	-	8.3e-25	87.1	0.0	9.6e-25	86.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
MacB_PCD	PF12704.7	gi|296242137|ref|YP_003649624.1|	-	6e-20	72.4	5.0	6e-20	72.4	5.0	2.7	3	1	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|296242137|ref|YP_003649624.1|	-	8.1e-17	61.5	3.8	8.1e-17	61.5	3.8	3.3	3	0	0	3	3	3	1	FtsX-like	permease	family
NapD	PF03927.13	gi|296242137|ref|YP_003649624.1|	-	0.04	14.0	0.0	0.81	9.8	0.0	2.4	2	0	0	2	2	2	0	NapD	protein
NPCBM_assoc	PF10633.9	gi|296242138|ref|YP_003649625.1|	-	0.0018	18.5	0.0	2.1	8.6	0.0	4.3	5	0	0	5	5	5	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|296242138|ref|YP_003649625.1|	-	0.14	12.5	3.2	2.3	8.6	0.2	3.9	3	0	0	3	3	3	0	Domain	of	unknown	function	DUF11
ABC_tran	PF00005.27	gi|296242139|ref|YP_003649626.1|	-	7.1e-36	123.7	0.1	9.1e-36	123.4	0.1	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242139|ref|YP_003649626.1|	-	9.2e-06	25.7	0.2	0.061	13.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|296242139|ref|YP_003649626.1|	-	0.00099	18.8	0.6	0.0018	18.0	0.6	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|296242139|ref|YP_003649626.1|	-	0.0022	17.5	0.1	1.1	8.7	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|296242139|ref|YP_003649626.1|	-	0.0028	17.9	0.2	0.0072	16.6	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|296242139|ref|YP_003649626.1|	-	0.0046	16.1	0.1	0.0076	15.3	0.1	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|296242139|ref|YP_003649626.1|	-	0.0057	17.1	0.1	0.0078	16.6	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|296242139|ref|YP_003649626.1|	-	0.0057	16.6	0.3	0.011	15.7	0.3	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|296242139|ref|YP_003649626.1|	-	0.012	16.1	0.1	0.018	15.5	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|296242139|ref|YP_003649626.1|	-	0.013	15.7	0.1	0.2	11.9	0.1	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NTPase_1	PF03266.15	gi|296242139|ref|YP_003649626.1|	-	0.023	14.6	0.4	1.1	9.2	0.1	2.4	2	1	0	2	2	2	0	NTPase
AAA_15	PF13175.6	gi|296242139|ref|YP_003649626.1|	-	0.024	14.4	0.0	0.27	10.9	0.1	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
cobW	PF02492.19	gi|296242139|ref|YP_003649626.1|	-	0.043	13.4	0.1	0.069	12.7	0.1	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Rad17	PF03215.15	gi|296242139|ref|YP_003649626.1|	-	0.071	13.0	0.0	0.13	12.2	0.0	1.5	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|296242139|ref|YP_003649626.1|	-	0.072	13.3	0.0	0.1	12.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|296242139|ref|YP_003649626.1|	-	0.073	12.8	0.0	0.11	12.3	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.14	gi|296242139|ref|YP_003649626.1|	-	0.11	12.4	0.1	0.6	10.0	0.1	2.2	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NB-ARC	PF00931.22	gi|296242139|ref|YP_003649626.1|	-	0.12	11.6	0.3	0.22	10.7	0.3	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_30	PF13604.6	gi|296242139|ref|YP_003649626.1|	-	0.13	12.0	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|296242139|ref|YP_003649626.1|	-	0.13	11.8	0.0	0.33	10.5	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
PadR	PF03551.14	gi|296242140|ref|YP_003649627.1|	-	1.4e-15	57.0	2.8	5.2e-15	55.2	0.7	2.1	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|296242140|ref|YP_003649627.1|	-	1.5e-06	28.3	0.2	3.2e-06	27.2	0.2	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
YjcQ	PF09639.10	gi|296242140|ref|YP_003649627.1|	-	8.4e-05	22.7	0.3	0.00019	21.6	0.3	1.6	1	0	0	1	1	1	1	YjcQ	protein
RTP	PF02334.16	gi|296242140|ref|YP_003649627.1|	-	0.0001	22.9	0.4	0.00019	22.1	0.2	1.6	1	1	0	1	1	1	1	Replication	terminator	protein
HTH_45	PF14947.6	gi|296242140|ref|YP_003649627.1|	-	0.00042	20.3	0.3	0.00093	19.1	0.3	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|296242140|ref|YP_003649627.1|	-	0.0062	16.6	0.0	0.017	15.2	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HxlR	PF01638.17	gi|296242140|ref|YP_003649627.1|	-	0.022	14.6	0.5	0.047	13.6	0.4	1.7	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
Replic_Relax	PF13814.6	gi|296242140|ref|YP_003649627.1|	-	0.024	14.7	0.0	0.03	14.4	0.0	1.3	1	0	0	1	1	1	0	Replication-relaxation
DUF1495	PF07381.11	gi|296242140|ref|YP_003649627.1|	-	0.052	13.4	0.4	1.8	8.5	0.0	2.5	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_12	PF08461.10	gi|296242140|ref|YP_003649627.1|	-	0.21	11.5	4.8	5.1	7.1	0.2	3.4	2	2	2	4	4	4	0	Ribonuclease	R	winged-helix	domain
ABC_tran	PF00005.27	gi|296242141|ref|YP_003649628.1|	-	1.4e-35	122.8	0.0	2.1e-35	122.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242141|ref|YP_003649628.1|	-	5.5e-10	39.5	0.8	3.3e-05	23.8	0.0	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|296242141|ref|YP_003649628.1|	-	1.5e-08	35.3	0.0	3.6e-08	34.0	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_15	PF13175.6	gi|296242141|ref|YP_003649628.1|	-	0.0001	22.2	0.1	0.28	10.9	0.1	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|296242141|ref|YP_003649628.1|	-	0.0011	18.5	0.0	0.0024	17.3	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.22	gi|296242141|ref|YP_003649628.1|	-	0.0017	18.0	0.1	0.0034	17.0	0.1	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
Rad17	PF03215.15	gi|296242141|ref|YP_003649628.1|	-	0.0023	17.9	0.0	0.0035	17.3	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA	PF00004.29	gi|296242141|ref|YP_003649628.1|	-	0.0025	18.3	0.4	0.028	14.8	0.4	2.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|296242141|ref|YP_003649628.1|	-	0.0029	17.3	0.3	0.0058	16.3	0.3	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|296242141|ref|YP_003649628.1|	-	0.007	16.9	2.4	0.012	16.2	2.4	1.7	1	1	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.15	gi|296242141|ref|YP_003649628.1|	-	0.0084	16.0	1.2	0.36	10.7	0.2	2.8	3	0	0	3	3	3	1	NTPase
AAA_22	PF13401.6	gi|296242141|ref|YP_003649628.1|	-	0.017	15.4	0.5	0.45	10.8	0.4	2.6	1	1	1	2	2	2	0	AAA	domain
T3RM_EcoP15I_C	PF18273.1	gi|296242141|ref|YP_003649628.1|	-	0.018	15.4	0.1	0.062	13.6	0.0	1.9	2	0	0	2	2	2	0	Type	III	R-M	EcoP15I	C-terminal	domain
ATP_bind_3	PF01171.20	gi|296242141|ref|YP_003649628.1|	-	0.028	14.2	0.0	7.6	6.2	0.0	2.3	1	1	1	2	2	2	0	PP-loop	family
AAA_30	PF13604.6	gi|296242141|ref|YP_003649628.1|	-	0.031	14.0	0.1	0.061	13.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|296242141|ref|YP_003649628.1|	-	0.067	12.9	0.2	13	5.5	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_31	PF13614.6	gi|296242141|ref|YP_003649628.1|	-	0.09	12.7	0.6	0.63	9.9	0.6	2.1	1	1	0	1	1	1	0	AAA	domain
ABC2_membrane	PF01061.24	gi|296242142|ref|YP_003649629.1|	-	2e-35	122.1	21.7	3.8e-35	121.2	21.7	1.5	1	1	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|296242142|ref|YP_003649629.1|	-	2.1e-15	56.7	26.0	2.1e-15	56.7	26.0	1.8	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|296242142|ref|YP_003649629.1|	-	0.0014	18.0	18.7	0.0014	18.0	18.7	2.0	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
Spermine_synth	PF01564.17	gi|296242143|ref|YP_003649630.1|	-	3.8e-50	169.9	0.0	5e-50	169.5	0.0	1.1	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
Spermine_synt_N	PF17284.2	gi|296242143|ref|YP_003649630.1|	-	2.9e-06	27.1	0.0	6.3e-06	26.0	0.0	1.6	1	0	0	1	1	1	1	Spermidine	synthase	tetramerisation	domain
Methyltransf_12	PF08242.12	gi|296242143|ref|YP_003649630.1|	-	0.00013	22.7	0.0	0.00019	22.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296242143|ref|YP_003649630.1|	-	0.00029	21.5	0.0	0.00058	20.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|296242143|ref|YP_003649630.1|	-	0.0004	20.1	0.0	0.00056	19.6	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_23	PF13489.6	gi|296242143|ref|YP_003649630.1|	-	0.012	15.5	0.0	0.02	14.7	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
DUF43	PF01861.16	gi|296242143|ref|YP_003649630.1|	-	0.013	14.7	0.2	0.022	14.0	0.1	1.4	1	1	0	1	1	1	0	Branched-chain	polyamine	synthase	A	C-terminal	domain
Methyltransf_30	PF05430.11	gi|296242143|ref|YP_003649630.1|	-	0.022	14.7	0.0	0.037	13.9	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_18	PF12847.7	gi|296242143|ref|YP_003649630.1|	-	0.056	13.4	0.0	0.12	12.3	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
NAD_binding_7	PF13241.6	gi|296242143|ref|YP_003649630.1|	-	0.11	12.9	0.0	0.17	12.4	0.0	1.3	1	0	0	1	1	1	0	Putative	NAD(P)-binding
MTS	PF05175.14	gi|296242143|ref|YP_003649630.1|	-	0.12	11.9	0.0	0.16	11.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_2	PF00891.18	gi|296242143|ref|YP_003649630.1|	-	0.12	11.6	0.0	0.22	10.8	0.0	1.6	1	1	0	1	1	1	0	O-methyltransferase	domain
DeoC	PF01791.9	gi|296242144|ref|YP_003649631.1|	-	2.5e-12	46.9	0.6	2.9e-12	46.7	0.6	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
DHO_dh	PF01180.21	gi|296242144|ref|YP_003649631.1|	-	8e-06	25.3	1.0	1.1e-05	24.8	0.8	1.3	1	1	0	1	1	1	1	Dihydroorotate	dehydrogenase
QRPTase_C	PF01729.19	gi|296242144|ref|YP_003649631.1|	-	0.018	14.8	0.4	0.028	14.2	0.4	1.3	1	0	0	1	1	1	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
GCV_H	PF01597.19	gi|296242145|ref|YP_003649632.1|	-	3.9e-43	146.2	0.6	4.9e-43	145.9	0.6	1.1	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
RnfC_N	PF13375.6	gi|296242145|ref|YP_003649632.1|	-	0.015	15.3	0.0	0.02	14.9	0.0	1.3	1	1	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
Biotin_lipoyl	PF00364.22	gi|296242145|ref|YP_003649632.1|	-	0.049	13.5	0.1	0.11	12.3	0.1	1.6	1	0	0	1	1	1	0	Biotin-requiring	enzyme
SHMT	PF00464.19	gi|296242146|ref|YP_003649633.1|	-	9.8e-67	225.3	0.1	1.2e-66	224.9	0.1	1.1	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.21	gi|296242146|ref|YP_003649633.1|	-	3e-07	29.9	0.0	1.3e-06	27.8	0.0	1.8	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|296242146|ref|YP_003649633.1|	-	3.5e-07	29.8	0.1	6.2e-07	29.0	0.1	1.4	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|296242146|ref|YP_003649633.1|	-	2.6e-05	23.4	0.0	5.4e-05	22.3	0.0	1.5	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|296242146|ref|YP_003649633.1|	-	0.012	14.1	0.4	0.077	11.5	0.1	2.3	1	1	1	2	2	2	0	Cys/Met	metabolism	PLP-dependent	enzyme
P_C10	PF14974.6	gi|296242146|ref|YP_003649633.1|	-	0.065	13.3	0.5	0.36	10.9	0.5	2.3	2	1	0	2	2	2	0	Protein	C10
GCV_T	PF01571.21	gi|296242147|ref|YP_003649634.1|	-	4.7e-66	222.8	0.0	6.1e-66	222.4	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|296242147|ref|YP_003649634.1|	-	2.2e-20	72.3	0.0	4.8e-20	71.3	0.0	1.6	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
DUF1493	PF07377.12	gi|296242147|ref|YP_003649634.1|	-	0.022	15.2	0.0	0.042	14.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1493)
GDC-P	PF02347.16	gi|296242148|ref|YP_003649635.1|	-	9.3e-113	377.3	0.0	1.1e-112	377.1	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
Aminotran_5	PF00266.19	gi|296242148|ref|YP_003649635.1|	-	0.00096	18.2	0.0	0.0046	16.0	0.0	1.8	2	0	0	2	2	2	1	Aminotransferase	class-V
GDC-P	PF02347.16	gi|296242149|ref|YP_003649636.1|	-	7.3e-08	31.7	0.0	2.4e-07	30.0	0.0	1.7	2	0	0	2	2	2	1	Glycine	cleavage	system	P-protein
Aminotran_5	PF00266.19	gi|296242149|ref|YP_003649636.1|	-	3.7e-07	29.4	0.0	7.8e-07	28.4	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|296242149|ref|YP_003649636.1|	-	0.016	14.4	0.0	0.03	13.5	0.0	1.4	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|296242149|ref|YP_003649636.1|	-	0.075	12.3	0.0	0.12	11.7	0.0	1.2	1	0	0	1	1	1	0	Beta-eliminating	lyase
Pyr_redox_2	PF07992.14	gi|296242150|ref|YP_003649637.1|	-	1.3e-67	228.1	6.5	1.7e-67	227.8	6.5	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|296242150|ref|YP_003649637.1|	-	3.9e-22	78.6	10.6	1e-20	74.0	1.8	3.6	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|296242150|ref|YP_003649637.1|	-	5.3e-19	68.5	0.0	1.1e-18	67.4	0.0	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|296242150|ref|YP_003649637.1|	-	3.8e-17	62.5	6.8	2.4e-16	59.9	0.6	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|296242150|ref|YP_003649637.1|	-	1.2e-09	37.4	10.6	2.3e-05	23.3	0.1	4.0	3	1	1	4	4	4	2	HI0933-like	protein
DAO	PF01266.24	gi|296242150|ref|YP_003649637.1|	-	2.6e-09	37.1	13.8	0.0078	15.8	0.1	4.1	3	1	1	4	4	4	3	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|296242150|ref|YP_003649637.1|	-	7.1e-07	28.7	5.4	8.8e-05	21.9	1.4	3.0	2	1	0	2	2	2	2	Thi4	family
3HCDH_N	PF02737.18	gi|296242150|ref|YP_003649637.1|	-	1.3e-06	28.4	4.9	9.2e-05	22.4	0.3	2.6	2	1	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|296242150|ref|YP_003649637.1|	-	1.7e-06	28.1	1.7	0.031	14.5	0.2	2.5	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|296242150|ref|YP_003649637.1|	-	4.5e-06	26.2	5.9	0.01	15.1	0.9	2.8	2	1	1	3	3	3	2	FAD	binding	domain
GIDA	PF01134.22	gi|296242150|ref|YP_003649637.1|	-	4.8e-06	25.9	11.8	6.8e-05	22.1	0.9	3.8	2	2	1	3	3	3	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|296242150|ref|YP_003649637.1|	-	5e-06	26.1	6.0	2.5e-05	23.9	0.6	2.7	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|296242150|ref|YP_003649637.1|	-	6.3e-06	25.5	7.8	4.4e-05	22.8	4.3	3.2	1	1	0	2	2	2	1	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|296242150|ref|YP_003649637.1|	-	2.6e-05	24.3	7.9	0.0013	18.8	0.0	4.0	2	2	2	4	4	4	1	FAD-NAD(P)-binding
K_oxygenase	PF13434.6	gi|296242150|ref|YP_003649637.1|	-	2.7e-05	23.5	1.4	0.0011	18.1	0.0	2.4	2	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Amino_oxidase	PF01593.24	gi|296242150|ref|YP_003649637.1|	-	5.8e-05	22.6	0.7	0.0027	17.1	0.1	3.0	3	0	0	3	3	3	1	Flavin	containing	amine	oxidoreductase
NAD_binding_7	PF13241.6	gi|296242150|ref|YP_003649637.1|	-	0.00015	22.2	2.3	0.032	14.7	0.1	2.6	2	1	0	2	2	2	1	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.14	gi|296242150|ref|YP_003649637.1|	-	0.0011	18.6	5.4	0.21	11.1	0.2	3.1	3	0	0	3	3	3	2	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
MCRA	PF06100.11	gi|296242150|ref|YP_003649637.1|	-	0.0076	15.1	0.2	0.33	9.7	0.0	2.1	2	0	0	2	2	2	1	MCRA	family
Lycopene_cycl	PF05834.12	gi|296242150|ref|YP_003649637.1|	-	0.011	14.8	5.5	1.7	7.6	0.4	3.1	2	1	1	3	3	3	0	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|296242150|ref|YP_003649637.1|	-	0.011	15.0	2.4	0.03	13.6	0.1	2.2	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ThiF	PF00899.21	gi|296242150|ref|YP_003649637.1|	-	0.025	14.0	0.2	0.81	9.0	0.0	2.2	2	0	0	2	2	2	0	ThiF	family
Trp_halogenase	PF04820.14	gi|296242150|ref|YP_003649637.1|	-	0.041	12.7	9.5	0.34	9.7	0.2	3.2	2	1	1	3	3	3	0	Tryptophan	halogenase
RraB	PF06877.11	gi|296242150|ref|YP_003649637.1|	-	0.051	14.3	0.0	0.16	12.7	0.0	1.8	1	0	0	1	1	1	0	Regulator	of	ribonuclease	activity	B
TrkA_N	PF02254.18	gi|296242150|ref|YP_003649637.1|	-	0.15	12.3	2.4	0.51	10.6	0.2	2.5	2	0	0	2	2	2	0	TrkA-N	domain
2-Hacid_dh_C	PF02826.19	gi|296242150|ref|YP_003649637.1|	-	0.73	9.2	3.6	1.8	7.9	0.3	2.7	2	1	1	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NUC130_3NT	PF08158.12	gi|296242151|ref|YP_003649638.1|	-	0.022	15.0	0.1	0.077	13.3	0.1	1.9	2	0	0	2	2	2	0	NUC130/3NT	domain
Peptidase_M42	PF05343.14	gi|296242152|ref|YP_003649639.1|	-	2.4e-107	358.3	0.1	2.8e-107	358.1	0.1	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.28	gi|296242152|ref|YP_003649639.1|	-	8.3e-10	38.7	0.1	1.3e-09	38.1	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.17	gi|296242152|ref|YP_003649639.1|	-	9.6e-08	31.9	0.0	0.0013	18.4	0.0	2.3	2	0	0	2	2	2	2	Peptidase	family	M28
Peptidase_M18	PF02127.15	gi|296242152|ref|YP_003649639.1|	-	0.079	11.7	0.0	0.21	10.3	0.0	1.6	1	1	1	2	2	2	0	Aminopeptidase	I	zinc	metalloprotease	(M18)
PHO4	PF01384.20	gi|296242153|ref|YP_003649640.1|	-	4.8e-59	200.1	25.2	7.3e-59	199.5	25.2	1.2	1	0	0	1	1	1	1	Phosphate	transporter	family
NCE101	PF11654.8	gi|296242153|ref|YP_003649640.1|	-	0.28	10.9	3.9	0.12	12.1	0.5	2.2	2	0	0	2	2	2	0	Non-classical	export	protein	1
Methyltr_RsmB-F	PF01189.17	gi|296242154|ref|YP_003649641.1|	-	2.9e-44	151.1	0.0	3.7e-44	150.8	0.0	1.1	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|296242154|ref|YP_003649641.1|	-	3.2e-11	43.6	0.0	5.9e-11	42.7	0.0	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
FtsJ	PF01728.19	gi|296242154|ref|YP_003649641.1|	-	0.0027	17.9	0.0	0.0036	17.4	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
UPF0113	PF03657.13	gi|296242155|ref|YP_003649642.1|	-	2.5e-16	59.7	0.0	3.5e-16	59.2	0.0	1.2	1	0	0	1	1	1	1	UPF0113	PUA	domain
AstB	PF04996.12	gi|296242155|ref|YP_003649642.1|	-	0.15	10.7	0.0	0.2	10.3	0.0	1.1	1	0	0	1	1	1	0	Succinylarginine	dihydrolase
Yip1	PF04893.17	gi|296242156|ref|YP_003649643.1|	-	3.4	7.3	14.0	2.7	7.7	7.6	2.1	1	1	1	2	2	2	0	Yip1	domain
DUF2649	PF10854.8	gi|296242157|ref|YP_003649644.1|	-	0.019	15.3	0.0	0.021	15.1	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2649)
SNF	PF00209.18	gi|296242158|ref|YP_003649645.1|	-	2.6e-50	171.6	40.9	5e-27	94.8	22.4	2.1	1	1	1	2	2	2	2	Sodium:neurotransmitter	symporter	family
FixQ	PF05545.11	gi|296242158|ref|YP_003649645.1|	-	0.25	11.3	0.2	0.25	11.3	0.2	4.1	5	0	0	5	5	5	0	Cbb3-type	cytochrome	oxidase	component	FixQ
UPF0542	PF15086.6	gi|296242158|ref|YP_003649645.1|	-	0.47	10.4	2.8	1.1	9.2	1.8	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0542
Biotin_lipoyl	PF00364.22	gi|296242159|ref|YP_003649646.1|	-	2.4e-13	49.7	5.8	5.1e-13	48.7	5.8	1.6	1	0	0	1	1	1	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|296242159|ref|YP_003649646.1|	-	9.8e-12	44.5	4.8	3.8e-06	26.6	0.3	2.5	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD_3	PF13437.6	gi|296242159|ref|YP_003649646.1|	-	8.2e-07	29.7	2.0	0.012	16.3	0.2	2.9	2	1	1	3	3	3	2	HlyD	family	secretion	protein
HlyD_D23	PF16576.5	gi|296242159|ref|YP_003649646.1|	-	8.6e-06	25.1	0.7	0.0019	17.5	0.1	2.2	1	1	1	2	2	2	2	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
RnfC_N	PF13375.6	gi|296242159|ref|YP_003649646.1|	-	0.01	15.7	4.0	0.78	9.7	1.1	2.9	1	1	1	2	2	2	0	RnfC	Barrel	sandwich	hybrid	domain
Peptidase_M23	PF01551.22	gi|296242159|ref|YP_003649646.1|	-	0.011	16.0	1.1	0.038	14.2	1.1	2.1	1	1	0	1	1	1	0	Peptidase	family	M23
DUF4457	PF14652.6	gi|296242159|ref|YP_003649646.1|	-	0.018	14.3	0.0	0.025	13.8	0.0	1.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4457)
GCV_H	PF01597.19	gi|296242159|ref|YP_003649646.1|	-	0.033	14.1	4.1	0.068	13.1	1.5	2.3	1	1	1	2	2	2	0	Glycine	cleavage	H-protein
PYNP_C	PF07831.13	gi|296242159|ref|YP_003649646.1|	-	0.038	13.7	1.0	6.7	6.5	0.1	2.5	2	0	0	2	2	2	0	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
Carboxyl_trans	PF01039.22	gi|296242160|ref|YP_003649647.1|	-	2.5e-186	620.1	0.0	2.8e-186	620.0	0.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|296242160|ref|YP_003649647.1|	-	7.3e-08	32.2	0.0	5.2e-06	26.1	0.0	2.2	2	0	0	2	2	2	2	Malonate	decarboxylase	gamma	subunit	(MdcE)
Thiolase_N	PF00108.23	gi|296242161|ref|YP_003649648.1|	-	6.9e-17	61.7	0.1	7.4e-16	58.3	0.0	2.4	2	1	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|296242161|ref|YP_003649648.1|	-	3.9e-11	42.7	0.0	8.7e-11	41.5	0.0	1.5	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|296242161|ref|YP_003649648.1|	-	9.6e-06	25.4	0.6	9.6e-06	25.4	0.6	2.1	2	0	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|296242161|ref|YP_003649648.1|	-	0.0011	19.0	0.3	0.071	13.1	0.0	2.6	2	0	0	2	2	2	1	Beta-ketoacyl	synthase,	C-terminal	domain
DUF2279	PF10043.9	gi|296242161|ref|YP_003649648.1|	-	0.0039	17.9	0.0	0.14	12.9	0.0	2.7	3	0	0	3	3	3	1	Predicted	periplasmic	lipoprotein	(DUF2279)
ACP_syn_III	PF08545.10	gi|296242161|ref|YP_003649648.1|	-	0.078	12.8	2.1	13	5.7	0.1	3.0	3	0	0	3	3	3	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
PqqD	PF05402.12	gi|296242162|ref|YP_003649649.1|	-	1e-11	44.9	0.5	1.4e-11	44.5	0.5	1.2	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
tRNA_anti-codon	PF01336.25	gi|296242163|ref|YP_003649650.1|	-	2.1e-08	34.0	0.3	3.1e-08	33.5	0.3	1.3	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|296242163|ref|YP_003649650.1|	-	0.00016	21.5	0.1	0.00024	21.0	0.1	1.3	1	0	0	1	1	1	1	Replication	protein	A	OB	domain
DUF123	PF01986.16	gi|296242164|ref|YP_003649651.1|	-	6.8e-24	84.2	0.0	9e-24	83.8	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
DUF296	PF03479.15	gi|296242165|ref|YP_003649652.1|	-	3.5e-16	59.5	0.1	3.9e-16	59.4	0.1	1.0	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
AAA_5	PF07728.14	gi|296242166|ref|YP_003649653.1|	-	2.7e-28	98.7	0.4	9.2e-27	93.7	0.0	2.7	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.11	gi|296242166|ref|YP_003649653.1|	-	2e-07	30.9	0.0	3.5e-07	30.1	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_8	PF17868.1	gi|296242166|ref|YP_003649653.1|	-	4.4e-07	29.7	0.0	1.8e-06	27.7	0.0	2.1	1	0	0	1	1	1	1	AAA	lid	domain
AAA	PF00004.29	gi|296242166|ref|YP_003649653.1|	-	6.9e-06	26.5	0.4	0.00053	20.4	0.0	2.9	3	0	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|296242166|ref|YP_003649653.1|	-	1.8e-05	25.2	0.2	0.00025	21.5	0.0	2.4	2	1	1	3	3	3	1	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|296242166|ref|YP_003649653.1|	-	0.00016	21.1	0.2	0.00071	19.0	0.0	2.1	3	0	0	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
AAA_22	PF13401.6	gi|296242166|ref|YP_003649653.1|	-	0.00033	20.9	0.0	0.04	14.2	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
RuvB_N	PF05496.12	gi|296242166|ref|YP_003649653.1|	-	0.00069	19.4	0.1	0.026	14.3	0.1	2.7	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
MCM	PF00493.23	gi|296242166|ref|YP_003649653.1|	-	0.0053	15.9	0.0	0.0096	15.0	0.0	1.5	1	0	0	1	1	1	1	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|296242166|ref|YP_003649653.1|	-	0.012	15.3	0.0	0.34	10.6	0.0	2.5	1	1	0	1	1	1	0	Sigma-54	interaction	domain
AAA_2	PF07724.14	gi|296242166|ref|YP_003649653.1|	-	0.014	15.5	0.1	2.9	8.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
AAA_7	PF12775.7	gi|296242166|ref|YP_003649653.1|	-	0.029	13.9	0.0	0.059	12.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
CCDC71L	PF15374.6	gi|296242166|ref|YP_003649653.1|	-	0.061	12.6	0.3	0.09	12.0	0.3	1.2	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	71L
DUF799	PF05643.11	gi|296242166|ref|YP_003649653.1|	-	0.14	11.7	0.1	0.36	10.4	0.0	1.6	2	0	0	2	2	2	0	Putative	bacterial	lipoprotein	(DUF799)
Intein_splicing	PF14890.6	gi|296242167|ref|YP_003649654.1|	-	6.6e-09	35.8	0.0	1.4e-08	34.8	0.0	1.6	1	0	0	1	1	1	1	Intein	splicing	domain
VWA_3	PF13768.6	gi|296242167|ref|YP_003649654.1|	-	2.4e-08	34.1	0.0	5e-08	33.0	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Hint	PF01079.20	gi|296242167|ref|YP_003649654.1|	-	5.7e-06	26.0	0.0	1.1e-05	25.1	0.0	1.3	1	0	0	1	1	1	1	Hint	module
VWA_2	PF13519.6	gi|296242167|ref|YP_003649654.1|	-	1.5e-05	25.6	0.0	8.1e-05	23.2	0.0	2.1	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|296242167|ref|YP_003649654.1|	-	0.0002	20.8	0.0	0.00037	20.0	0.0	1.3	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
Vint	PF14623.6	gi|296242167|ref|YP_003649654.1|	-	0.018	14.9	0.1	0.075	12.8	0.1	2.0	2	0	0	2	2	2	0	Hint-domain
XdhC_C	PF13478.6	gi|296242169|ref|YP_003649656.1|	-	6.5e-30	104.2	0.0	9.1e-30	103.7	0.0	1.2	1	0	0	1	1	1	1	XdhC	Rossmann	domain
XdhC_CoxI	PF02625.16	gi|296242169|ref|YP_003649656.1|	-	1.2e-19	70.2	0.2	2e-19	69.5	0.2	1.3	1	0	0	1	1	1	1	XdhC	and	CoxI	family
TrkA_N	PF02254.18	gi|296242169|ref|YP_003649656.1|	-	0.0025	18.1	0.0	0.0046	17.2	0.0	1.4	1	0	0	1	1	1	1	TrkA-N	domain
2-Hacid_dh_C	PF02826.19	gi|296242169|ref|YP_003649656.1|	-	0.0082	15.5	0.3	0.017	14.4	0.0	1.6	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|296242169|ref|YP_003649656.1|	-	0.013	15.4	0.0	0.019	14.9	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
PrpR_N	PF06506.11	gi|296242169|ref|YP_003649656.1|	-	0.019	14.6	0.0	0.098	12.2	0.0	1.9	2	0	0	2	2	2	0	Propionate	catabolism	activator
Pyr_redox	PF00070.27	gi|296242169|ref|YP_003649656.1|	-	0.037	14.6	0.0	2.9	8.5	0.0	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.20	gi|296242169|ref|YP_003649656.1|	-	0.053	13.6	0.0	0.24	11.5	0.0	2.1	2	1	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|296242169|ref|YP_003649656.1|	-	0.056	14.0	0.3	12	6.6	0.0	2.9	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
THUMP	PF02926.17	gi|296242171|ref|YP_003649658.1|	-	2.2e-07	31.0	0.0	3.3e-07	30.5	0.0	1.2	1	0	0	1	1	1	1	THUMP	domain
Nitroreductase	PF00881.24	gi|296242172|ref|YP_003649659.1|	-	5e-30	104.8	0.0	5.7e-30	104.6	0.0	1.0	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|296242172|ref|YP_003649659.1|	-	0.0003	20.4	0.0	0.28	10.7	0.0	2.6	2	1	0	2	2	2	2	Putative	TM	nitroreductase
MtN3_slv	PF03083.16	gi|296242172|ref|YP_003649659.1|	-	0.046	13.8	0.0	0.095	12.7	0.0	1.4	1	0	0	1	1	1	0	Sugar	efflux	transporter	for	intercellular	exchange
PhoU_div	PF01865.16	gi|296242173|ref|YP_003649660.1|	-	2.8e-11	43.2	7.0	3.2e-11	43.0	7.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
Flavin_Reduct	PF01613.18	gi|296242174|ref|YP_003649661.1|	-	1.5e-24	86.8	0.0	1.7e-24	86.7	0.0	1.1	1	0	0	1	1	1	1	Flavin	reductase	like	domain
Aminotran_1_2	PF00155.21	gi|296242175|ref|YP_003649662.1|	-	1.5e-44	152.7	0.0	1.7e-44	152.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.7	gi|296242175|ref|YP_003649662.1|	-	8.2e-05	21.6	0.0	0.00012	21.1	0.0	1.2	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
MgtE	PF01769.16	gi|296242176|ref|YP_003649663.1|	-	1.6e-24	86.7	32.8	3.6e-14	53.2	7.1	3.0	2	1	1	3	3	3	2	Divalent	cation	transporter
TM_helix	PF05552.12	gi|296242176|ref|YP_003649663.1|	-	0.54	10.3	9.7	0.5	10.4	4.0	3.0	2	0	0	2	2	2	0	Conserved	TM	helix
PhoU	PF01895.19	gi|296242177|ref|YP_003649664.1|	-	2.5e-07	31.1	0.2	0.00013	22.4	0.0	2.8	2	0	0	2	2	2	2	PhoU	domain
TrkA_C	PF02080.21	gi|296242177|ref|YP_003649664.1|	-	0.0082	15.9	0.0	0.21	11.4	0.0	2.4	2	0	0	2	2	2	1	TrkA-C	domain
PhoU_div	PF01865.16	gi|296242177|ref|YP_003649664.1|	-	0.042	13.2	1.5	1.5	8.1	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF47
CARDB	PF07705.11	gi|296242178|ref|YP_003649665.1|	-	0.0019	18.4	0.7	0.0027	17.9	0.7	1.3	1	0	0	1	1	1	1	CARDB
Pilin_N	PF07790.11	gi|296242178|ref|YP_003649665.1|	-	0.0043	17.9	4.5	0.0043	17.9	4.5	2.0	1	1	1	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
BatD	PF13584.6	gi|296242178|ref|YP_003649665.1|	-	0.035	12.9	0.7	1.5	7.5	0.1	2.0	1	1	1	2	2	2	0	Oxygen	tolerance
ComGG	PF14173.6	gi|296242178|ref|YP_003649665.1|	-	0.098	13.1	0.2	1.6	9.2	0.1	2.5	1	1	2	3	3	3	0	ComG	operon	protein	7
DUF4981	PF16353.5	gi|296242178|ref|YP_003649665.1|	-	0.14	12.6	0.1	0.79	10.2	0.1	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function(DUF4981)
FixH	PF05751.11	gi|296242178|ref|YP_003649665.1|	-	0.34	10.9	1.7	1.5	8.8	1.6	2.0	1	1	0	1	1	1	0	FixH
DUF11	PF01345.18	gi|296242179|ref|YP_003649666.1|	-	0.18	12.2	0.4	0.46	10.8	0.0	2.0	2	1	0	2	2	2	0	Domain	of	unknown	function	DUF11
DUF2627	PF11118.8	gi|296242181|ref|YP_003649668.1|	-	7.5	7.2	7.7	0.49	11.0	2.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2627)
ABC_tran	PF00005.27	gi|296242182|ref|YP_003649669.1|	-	7.3e-39	133.4	0.0	5.1e-18	65.9	0.0	2.5	2	1	0	2	2	2	2	ABC	transporter
AAA_16	PF13191.6	gi|296242182|ref|YP_003649669.1|	-	4.6e-08	33.6	0.6	0.008	16.6	0.3	2.5	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|296242182|ref|YP_003649669.1|	-	2.1e-07	31.1	10.5	0.012	15.4	1.3	3.9	3	1	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|296242182|ref|YP_003649669.1|	-	2.9e-07	31.2	0.3	0.029	14.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|296242182|ref|YP_003649669.1|	-	5.9e-06	25.9	3.8	0.027	14.2	0.5	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|296242182|ref|YP_003649669.1|	-	2.6e-05	24.5	2.8	0.089	13.1	0.3	2.8	2	1	0	2	2	2	2	AAA	domain
AAA	PF00004.29	gi|296242182|ref|YP_003649669.1|	-	2.9e-05	24.5	1.2	0.18	12.2	0.1	3.0	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SSE	PF00437.20	gi|296242182|ref|YP_003649669.1|	-	3e-05	23.2	0.4	0.00071	18.7	0.1	2.2	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_18	PF13238.6	gi|296242182|ref|YP_003649669.1|	-	3.8e-05	24.2	0.3	0.047	14.2	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|296242182|ref|YP_003649669.1|	-	0.00025	20.7	0.6	0.034	13.7	0.1	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|296242182|ref|YP_003649669.1|	-	0.00035	20.7	2.4	0.24	11.6	0.2	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|296242182|ref|YP_003649669.1|	-	0.0012	18.4	2.1	0.11	12.0	0.3	2.3	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
SMC_N	PF02463.19	gi|296242182|ref|YP_003649669.1|	-	0.0012	18.3	2.6	5.5	6.4	0.1	4.0	3	1	0	4	4	4	0	RecF/RecN/SMC	N	terminal	domain
Mg_chelatase	PF01078.21	gi|296242182|ref|YP_003649669.1|	-	0.0015	18.0	0.7	0.027	13.8	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|296242182|ref|YP_003649669.1|	-	0.0024	17.8	4.5	0.35	10.8	0.2	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_30	PF13604.6	gi|296242182|ref|YP_003649669.1|	-	0.0032	17.2	3.9	0.5	10.0	0.3	2.5	2	0	0	2	2	2	2	AAA	domain
PduV-EutP	PF10662.9	gi|296242182|ref|YP_003649669.1|	-	0.0036	17.1	2.7	0.11	12.3	0.1	2.4	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
SbcCD_C	PF13558.6	gi|296242182|ref|YP_003649669.1|	-	0.0039	17.4	0.1	3.3	8.0	0.0	2.7	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_15	PF13175.6	gi|296242182|ref|YP_003649669.1|	-	0.004	16.9	1.5	0.44	10.2	0.5	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
FtsK_SpoIIIE	PF01580.18	gi|296242182|ref|YP_003649669.1|	-	0.0052	16.2	0.9	0.13	11.6	0.2	2.2	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
RsgA_GTPase	PF03193.16	gi|296242182|ref|YP_003649669.1|	-	0.0089	15.9	2.4	2.5	8.0	0.6	2.3	2	0	0	2	2	2	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|296242182|ref|YP_003649669.1|	-	0.0099	16.0	3.6	1.5	8.9	0.2	2.5	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
ResIII	PF04851.15	gi|296242182|ref|YP_003649669.1|	-	0.013	15.6	0.1	1.1	9.3	0.0	2.5	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_24	PF13479.6	gi|296242182|ref|YP_003649669.1|	-	0.014	15.1	6.9	0.79	9.4	0.3	3.1	3	0	0	3	3	3	0	AAA	domain
AAA_28	PF13521.6	gi|296242182|ref|YP_003649669.1|	-	0.015	15.5	9.8	0.13	12.5	0.6	2.9	3	0	0	3	3	2	0	AAA	domain
DUF3584	PF12128.8	gi|296242182|ref|YP_003649669.1|	-	0.016	12.8	6.6	0.059	10.9	1.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
IstB_IS21	PF01695.17	gi|296242182|ref|YP_003649669.1|	-	0.017	14.9	1.4	0.98	9.1	0.1	2.5	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Zeta_toxin	PF06414.12	gi|296242182|ref|YP_003649669.1|	-	0.017	14.4	1.4	0.19	11.0	0.2	2.2	2	0	0	2	2	2	0	Zeta	toxin
SRPRB	PF09439.10	gi|296242182|ref|YP_003649669.1|	-	0.018	14.5	1.2	2.9	7.3	0.1	2.3	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
TsaE	PF02367.17	gi|296242182|ref|YP_003649669.1|	-	0.018	15.0	1.1	1.4	8.9	0.1	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
MobB	PF03205.14	gi|296242182|ref|YP_003649669.1|	-	0.018	14.9	3.5	0.5	10.3	0.3	2.4	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DLIC	PF05783.11	gi|296242182|ref|YP_003649669.1|	-	0.021	13.7	1.7	1.2	7.9	0.2	2.2	2	0	0	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
ATP-synt_ab	PF00006.25	gi|296242182|ref|YP_003649669.1|	-	0.024	14.3	0.4	4.4	6.9	0.1	2.3	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_5	PF07728.14	gi|296242182|ref|YP_003649669.1|	-	0.031	14.3	5.9	0.83	9.7	0.2	3.5	4	0	0	4	4	3	0	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|296242182|ref|YP_003649669.1|	-	0.033	13.9	1.7	0.27	10.9	0.1	2.4	3	0	0	3	3	2	0	Sigma-54	interaction	domain
NB-ARC	PF00931.22	gi|296242182|ref|YP_003649669.1|	-	0.035	13.3	3.6	1.8	7.7	0.5	2.4	2	0	0	2	2	2	0	NB-ARC	domain
SRP54	PF00448.22	gi|296242182|ref|YP_003649669.1|	-	0.051	13.2	4.6	2.8	7.5	0.5	2.2	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
cobW	PF02492.19	gi|296242182|ref|YP_003649669.1|	-	0.058	13.0	2.6	4.9	6.7	0.4	2.7	3	0	0	3	3	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DEAD	PF00270.29	gi|296242182|ref|YP_003649669.1|	-	0.06	13.1	0.9	0.2	11.4	0.1	2.2	3	0	0	3	3	2	0	DEAD/DEAH	box	helicase
DUF87	PF01935.17	gi|296242182|ref|YP_003649669.1|	-	0.061	13.4	5.8	0.3	11.1	1.0	2.4	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
ATPase	PF06745.13	gi|296242182|ref|YP_003649669.1|	-	0.07	12.5	2.7	0.87	8.9	0.2	2.3	2	0	0	2	2	2	0	KaiC
dNK	PF01712.19	gi|296242182|ref|YP_003649669.1|	-	0.071	13.0	0.1	1.9	8.3	0.0	2.2	2	0	0	2	2	2	0	Deoxynucleoside	kinase
Arf	PF00025.21	gi|296242182|ref|YP_003649669.1|	-	0.073	12.5	1.1	4.5	6.7	0.1	2.4	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
Sigma54_activ_2	PF14532.6	gi|296242182|ref|YP_003649669.1|	-	0.076	13.1	0.1	0.59	10.3	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_13	PF13166.6	gi|296242182|ref|YP_003649669.1|	-	0.13	10.9	4.4	2.9	6.4	0.4	2.1	2	0	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.12	gi|296242182|ref|YP_003649669.1|	-	0.17	11.6	1.1	1.7	8.4	0.1	2.3	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NTPase_1	PF03266.15	gi|296242182|ref|YP_003649669.1|	-	0.18	11.7	5.0	1.8	8.4	0.4	2.5	2	0	0	2	2	2	0	NTPase
PEPCK_ATP	PF01293.20	gi|296242182|ref|YP_003649669.1|	-	0.2	10.3	2.0	3	6.4	0.0	2.1	2	0	0	2	2	2	0	Phosphoenolpyruvate	carboxykinase
TrwB_AAD_bind	PF10412.9	gi|296242182|ref|YP_003649669.1|	-	0.21	10.5	2.8	1.6	7.5	0.3	2.3	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TniB	PF05621.11	gi|296242182|ref|YP_003649669.1|	-	0.21	11.0	0.1	2.8	7.3	0.0	2.4	2	0	0	2	2	2	0	Bacterial	TniB	protein
RNA_helicase	PF00910.22	gi|296242182|ref|YP_003649669.1|	-	0.22	12.0	0.9	9.4	6.7	0.1	2.6	2	0	0	2	2	2	0	RNA	helicase
AAA_19	PF13245.6	gi|296242182|ref|YP_003649669.1|	-	0.25	11.7	4.3	8.1	6.8	0.4	2.5	2	0	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|296242182|ref|YP_003649669.1|	-	0.41	10.5	1.7	32	4.3	0.0	2.9	3	0	0	3	3	3	0	ATPase	domain	predominantly	from	Archaea
Thymidylate_kin	PF02223.17	gi|296242182|ref|YP_003649669.1|	-	0.5	10.0	2.0	3.5	7.3	0.1	2.6	2	0	0	2	2	2	0	Thymidylate	kinase
AAA_14	PF13173.6	gi|296242182|ref|YP_003649669.1|	-	0.57	10.2	5.5	8.4	6.4	0.4	3.0	3	0	0	3	3	2	0	AAA	domain
PhoH	PF02562.16	gi|296242182|ref|YP_003649669.1|	-	0.82	9.1	2.8	5.9	6.3	0.3	2.3	2	0	0	2	2	2	0	PhoH-like	protein
Roc	PF08477.13	gi|296242182|ref|YP_003649669.1|	-	0.92	9.7	3.8	11	6.3	0.2	2.5	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Rhomboid	PF01694.22	gi|296242184|ref|YP_003649671.1|	-	1.4e-34	119.3	20.0	1.4e-34	119.3	20.0	2.0	3	0	0	3	3	3	1	Rhomboid	family
DUF1751	PF08551.10	gi|296242184|ref|YP_003649671.1|	-	0.022	15.3	3.7	0.029	14.9	0.9	2.7	2	0	0	2	2	2	0	Eukaryotic	integral	membrane	protein	(DUF1751)
Alpha-amylase	PF00128.24	gi|296242185|ref|YP_003649672.1|	-	3.9e-60	204.2	0.0	5.6e-60	203.7	0.0	1.2	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
AMPK1_CBM	PF16561.5	gi|296242185|ref|YP_003649672.1|	-	3.8e-05	23.8	0.0	9.8e-05	22.5	0.0	1.6	1	0	0	1	1	1	1	Glycogen	recognition	site	of	AMP-activated	protein	kinase
Alpha-amylase_C	PF02806.18	gi|296242185|ref|YP_003649672.1|	-	0.011	16.2	0.0	0.064	13.7	0.0	2.4	2	0	0	2	2	2	0	Alpha	amylase,	C-terminal	all-beta	domain
Cation_efflux	PF01545.21	gi|296242186|ref|YP_003649673.1|	-	6.6e-44	150.0	10.2	7.9e-44	149.8	10.2	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|296242186|ref|YP_003649673.1|	-	1.2e-16	60.6	3.1	2e-16	59.8	3.1	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
Na_Ca_ex	PF01699.24	gi|296242186|ref|YP_003649673.1|	-	0.63	10.0	8.8	0.042	13.8	1.1	2.3	2	1	0	2	2	2	0	Sodium/calcium	exchanger	protein
PAP2	PF01569.21	gi|296242186|ref|YP_003649673.1|	-	1.1	9.0	14.2	2.2	8.1	7.6	2.7	2	1	0	2	2	2	0	PAP2	superfamily
YebG	PF07130.12	gi|296242187|ref|YP_003649674.1|	-	0.11	12.3	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	YebG	protein
AFOR_C	PF01314.18	gi|296242188|ref|YP_003649675.1|	-	4.1e-76	256.5	0.0	7e-76	255.7	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|296242188|ref|YP_003649675.1|	-	9.3e-57	192.1	0.0	1.4e-56	191.6	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Fer4_6	PF12837.7	gi|296242189|ref|YP_003649676.1|	-	1.5e-11	43.8	30.1	2.6e-05	24.1	2.3	4.2	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|296242189|ref|YP_003649676.1|	-	4.7e-09	36.3	46.8	1.3e-06	28.5	10.2	3.0	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|296242189|ref|YP_003649676.1|	-	6.6e-09	35.6	30.1	0.0023	18.3	2.2	4.3	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|296242189|ref|YP_003649676.1|	-	8.3e-08	31.9	31.0	1.9e-05	24.5	2.7	4.2	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|296242189|ref|YP_003649676.1|	-	2.7e-07	30.1	11.6	1.9e-06	27.4	3.0	5.0	6	0	0	6	6	6	3	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|296242189|ref|YP_003649676.1|	-	2.8e-07	30.5	30.6	1.8e-05	24.7	11.6	3.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|296242189|ref|YP_003649676.1|	-	7.3e-07	29.7	25.1	5.4e-05	23.7	11.6	3.3	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_11	PF13247.6	gi|296242189|ref|YP_003649676.1|	-	2.2e-06	27.7	11.1	2.2e-06	27.7	11.1	1.9	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296242189|ref|YP_003649676.1|	-	3.6e-06	27.0	20.5	0.00067	19.7	9.0	3.2	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|296242189|ref|YP_003649676.1|	-	0.009	16.9	4.4	0.009	16.9	4.4	4.3	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|296242189|ref|YP_003649676.1|	-	0.067	13.7	28.5	0.071	13.7	2.5	4.0	3	1	2	5	5	5	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|296242189|ref|YP_003649676.1|	-	0.075	13.6	2.3	0.075	13.6	2.3	3.8	4	0	0	4	4	4	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_16	PF13484.6	gi|296242189|ref|YP_003649676.1|	-	0.11	13.4	0.5	0.11	13.4	0.5	4.1	2	1	4	6	6	5	0	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|296242189|ref|YP_003649676.1|	-	0.73	10.3	29.3	1.2	9.6	9.3	3.5	1	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Band_7	PF01145.25	gi|296242190|ref|YP_003649677.1|	-	1.8e-34	119.3	0.3	2.4e-34	118.9	0.3	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|296242190|ref|YP_003649677.1|	-	0.00011	21.9	0.1	0.00018	21.3	0.1	1.4	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
ProSAAS	PF07259.12	gi|296242190|ref|YP_003649677.1|	-	0.0028	17.7	1.1	0.0041	17.1	1.1	1.2	1	0	0	1	1	1	1	ProSAAS	precursor
NfeD	PF01957.18	gi|296242191|ref|YP_003649678.1|	-	1.2e-09	38.4	2.5	1.2e-09	38.4	2.5	2.3	2	0	0	2	2	2	1	NfeD-like	C-terminal,	partner-binding
SDH_sah	PF01972.16	gi|296242191|ref|YP_003649678.1|	-	0.013	14.5	0.3	0.028	13.4	0.1	1.6	2	0	0	2	2	2	0	Serine	dehydrogenase	proteinase
CLP_protease	PF00574.23	gi|296242191|ref|YP_003649678.1|	-	0.023	14.6	0.1	0.036	13.9	0.1	1.3	1	0	0	1	1	1	0	Clp	protease
UbiA	PF01040.18	gi|296242191|ref|YP_003649678.1|	-	2.8	7.2	17.4	0.41	9.9	13.1	1.7	2	0	0	2	2	2	0	UbiA	prenyltransferase	family
AFOR_N	PF02730.15	gi|296242192|ref|YP_003649679.1|	-	8.6e-34	117.1	0.0	1.2e-33	116.6	0.0	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
AFOR_C	PF01314.18	gi|296242192|ref|YP_003649679.1|	-	1.6e-14	53.7	0.0	3.5e-14	52.6	0.0	1.5	1	1	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
tRNA-synt_1d	PF00750.19	gi|296242193|ref|YP_003649680.1|	-	4.5e-26	91.6	4.4	5.7e-14	51.8	1.9	2.5	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|296242193|ref|YP_003649680.1|	-	1.6e-17	63.8	0.7	5.7e-17	62.0	0.4	2.2	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
tRNA-synt_1e	PF01406.19	gi|296242193|ref|YP_003649680.1|	-	0.0016	17.9	1.6	0.032	13.6	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
Arg_tRNA_synt_N	PF03485.16	gi|296242193|ref|YP_003649680.1|	-	0.01	16.4	0.0	0.076	13.6	0.0	2.5	2	0	0	2	2	2	0	Arginyl	tRNA	synthetase	N	terminal	domain
EamA	PF00892.20	gi|296242194|ref|YP_003649681.1|	-	4.5e-20	72.2	38.7	2e-12	47.5	15.0	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
Aminotran_3	PF00202.21	gi|296242195|ref|YP_003649682.1|	-	2.1e-113	379.0	0.0	2.5e-113	378.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|296242195|ref|YP_003649682.1|	-	0.0079	15.4	0.0	0.06	12.5	0.0	1.9	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Peptidase_M32	PF02074.15	gi|296242196|ref|YP_003649683.1|	-	5.2e-160	533.4	0.0	6.1e-160	533.2	0.0	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
LAGLIDADG_1	PF00961.19	gi|296242196|ref|YP_003649683.1|	-	0.13	13.2	0.1	1.4	9.9	0.0	2.4	2	0	0	2	2	2	0	LAGLIDADG	endonuclease
NTP_transferase	PF00483.23	gi|296242197|ref|YP_003649684.1|	-	3.2e-36	125.2	0.0	4.1e-36	124.8	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|296242197|ref|YP_003649684.1|	-	4.1e-10	40.2	0.0	5.7e-10	39.8	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|296242197|ref|YP_003649684.1|	-	5.8e-07	29.0	19.0	1.9e-05	24.2	0.3	4.4	3	2	1	4	4	4	3	Bacterial	transferase	hexapeptide	(six	repeats)
CTP_transf_3	PF02348.19	gi|296242197|ref|YP_003649684.1|	-	0.17	11.8	0.0	0.67	9.8	0.0	1.9	2	1	1	3	3	3	0	Cytidylyltransferase
PGM_PMM_I	PF02878.16	gi|296242198|ref|YP_003649685.1|	-	4.7e-08	32.8	0.0	8.3e-08	32.0	0.0	1.3	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|296242198|ref|YP_003649685.1|	-	0.0013	19.3	0.0	0.0029	18.2	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
ABC_tran	PF00005.27	gi|296242199|ref|YP_003649686.1|	-	6.4e-43	146.6	0.0	3.5e-20	72.9	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|296242199|ref|YP_003649686.1|	-	2.3e-22	80.2	8.8	2.4e-08	34.1	0.0	4.1	2	2	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|296242199|ref|YP_003649686.1|	-	4.9e-14	52.3	0.0	2.6e-06	27.0	0.0	3.4	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|296242199|ref|YP_003649686.1|	-	1.1e-07	31.5	1.4	0.0071	16.1	0.2	2.6	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|296242199|ref|YP_003649686.1|	-	2e-07	31.7	4.0	0.0036	17.8	0.1	2.7	2	1	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|296242199|ref|YP_003649686.1|	-	3.4e-07	30.6	0.1	0.012	15.8	0.0	3.2	3	0	0	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|296242199|ref|YP_003649686.1|	-	4.4e-06	27.2	0.1	0.069	13.5	0.0	2.5	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_15	PF13175.6	gi|296242199|ref|YP_003649686.1|	-	4.6e-06	26.6	3.4	0.57	9.8	0.1	4.1	2	2	2	4	4	4	2	AAA	ATPase	domain
AAA_25	PF13481.6	gi|296242199|ref|YP_003649686.1|	-	7.3e-06	25.7	0.0	0.023	14.3	0.1	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.6	gi|296242199|ref|YP_003649686.1|	-	7.5e-06	25.8	0.1	0.11	12.2	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.12	gi|296242199|ref|YP_003649686.1|	-	1.4e-05	25.1	2.4	0.11	12.4	0.1	2.9	3	0	0	3	3	2	2	NACHT	domain
RsgA_GTPase	PF03193.16	gi|296242199|ref|YP_003649686.1|	-	4.9e-05	23.3	0.2	0.31	10.9	0.0	2.5	2	0	0	2	2	2	2	RsgA	GTPase
AAA_30	PF13604.6	gi|296242199|ref|YP_003649686.1|	-	6.9e-05	22.7	0.8	0.23	11.2	0.0	3.1	3	0	0	3	3	3	1	AAA	domain
T2SSE	PF00437.20	gi|296242199|ref|YP_003649686.1|	-	0.00014	21.0	0.1	0.029	13.4	0.0	2.3	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_14	PF13173.6	gi|296242199|ref|YP_003649686.1|	-	0.00048	20.2	0.0	0.054	13.5	0.0	3.3	3	0	0	3	3	3	1	AAA	domain
G-alpha	PF00503.20	gi|296242199|ref|YP_003649686.1|	-	0.0005	19.3	0.2	0.67	9.1	0.1	2.3	2	0	0	2	2	2	2	G-protein	alpha	subunit
AAA_5	PF07728.14	gi|296242199|ref|YP_003649686.1|	-	0.00065	19.7	0.8	3.1	7.8	0.2	3.3	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
Pox_A32	PF04665.12	gi|296242199|ref|YP_003649686.1|	-	0.00066	19.2	1.3	0.019	14.4	0.1	2.3	2	0	0	2	2	2	1	Poxvirus	A32	protein
AAA_33	PF13671.6	gi|296242199|ref|YP_003649686.1|	-	0.00086	19.5	0.1	1.7	8.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|296242199|ref|YP_003649686.1|	-	0.0018	18.0	0.1	2.2	8.0	0.0	3.2	3	0	0	3	3	3	1	IstB-like	ATP	binding	protein
MobB	PF03205.14	gi|296242199|ref|YP_003649686.1|	-	0.002	18.0	1.0	1.8	8.4	0.2	2.7	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA	PF00004.29	gi|296242199|ref|YP_003649686.1|	-	0.0023	18.4	1.7	0.61	10.5	0.1	3.4	3	1	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.18	gi|296242199|ref|YP_003649686.1|	-	0.0028	17.0	0.2	0.8	9.0	0.0	2.5	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_19	PF13245.6	gi|296242199|ref|YP_003649686.1|	-	0.0035	17.7	1.3	3.3	8.0	0.1	2.9	3	0	0	3	3	2	1	AAA	domain
AAA_18	PF13238.6	gi|296242199|ref|YP_003649686.1|	-	0.0035	17.9	0.0	0.52	10.8	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
PduV-EutP	PF10662.9	gi|296242199|ref|YP_003649686.1|	-	0.0044	16.8	1.6	10	5.8	0.0	3.3	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
ATPase	PF06745.13	gi|296242199|ref|YP_003649686.1|	-	0.0045	16.4	2.2	0.36	10.1	0.1	3.6	4	0	0	4	4	4	1	KaiC
DLIC	PF05783.11	gi|296242199|ref|YP_003649686.1|	-	0.0056	15.6	0.3	2.4	6.9	0.0	2.1	2	0	0	2	2	2	2	Dynein	light	intermediate	chain	(DLIC)
SRP54	PF00448.22	gi|296242199|ref|YP_003649686.1|	-	0.0071	16.0	1.1	3.2	7.3	0.1	2.4	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
TsaE	PF02367.17	gi|296242199|ref|YP_003649686.1|	-	0.0079	16.2	0.3	4.7	7.2	0.0	2.4	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Rad17	PF03215.15	gi|296242199|ref|YP_003649686.1|	-	0.011	15.7	0.1	1.9	8.4	0.0	2.6	3	0	0	3	3	2	0	Rad17	P-loop	domain
NB-ARC	PF00931.22	gi|296242199|ref|YP_003649686.1|	-	0.013	14.7	0.1	0.7	9.0	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
cobW	PF02492.19	gi|296242199|ref|YP_003649686.1|	-	0.014	15.0	6.0	0.24	11.0	0.2	2.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ATP_bind_1	PF03029.17	gi|296242199|ref|YP_003649686.1|	-	0.014	15.2	0.4	3	7.6	0.0	2.4	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
STAS	PF01740.21	gi|296242199|ref|YP_003649686.1|	-	0.015	14.9	0.0	6.9	6.3	0.0	2.6	2	1	0	2	2	2	0	STAS	domain
ATPase_2	PF01637.18	gi|296242199|ref|YP_003649686.1|	-	0.016	15.1	5.0	0.45	10.4	0.1	3.4	3	2	1	4	4	4	0	ATPase	domain	predominantly	from	Archaea
PRK	PF00485.18	gi|296242199|ref|YP_003649686.1|	-	0.017	14.8	0.1	7.3	6.3	0.0	2.5	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
MeaB	PF03308.16	gi|296242199|ref|YP_003649686.1|	-	0.03	13.3	0.1	2.7	6.9	0.0	2.4	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Mg_chelatase	PF01078.21	gi|296242199|ref|YP_003649686.1|	-	0.04	13.3	0.2	2.7	7.3	0.0	2.5	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|296242199|ref|YP_003649686.1|	-	0.042	14.2	0.1	6.6	7.2	0.0	2.6	2	0	0	2	2	2	0	RNA	helicase
NTPase_1	PF03266.15	gi|296242199|ref|YP_003649686.1|	-	0.052	13.5	3.1	3.9	7.4	0.1	3.1	3	0	0	3	3	2	0	NTPase
Roc	PF08477.13	gi|296242199|ref|YP_003649686.1|	-	0.059	13.6	2.3	8.2	6.7	0.3	2.7	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
DUF3584	PF12128.8	gi|296242199|ref|YP_003649686.1|	-	0.065	10.7	0.2	0.11	10.0	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_11	PF13086.6	gi|296242199|ref|YP_003649686.1|	-	0.067	13.0	0.1	9.1	6.0	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|296242199|ref|YP_003649686.1|	-	0.074	12.5	0.1	5.1	6.5	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
AAA_7	PF12775.7	gi|296242199|ref|YP_003649686.1|	-	0.08	12.4	1.6	8.5	5.8	0.0	2.7	3	0	0	3	3	3	0	P-loop	containing	dynein	motor	region
Zeta_toxin	PF06414.12	gi|296242199|ref|YP_003649686.1|	-	0.13	11.6	0.0	13	5.0	0.0	3.0	3	0	0	3	3	3	0	Zeta	toxin
SbcCD_C	PF13558.6	gi|296242199|ref|YP_003649686.1|	-	0.17	12.1	0.0	5.1	7.4	0.0	2.8	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
SpecificRecomb	PF10136.9	gi|296242199|ref|YP_003649686.1|	-	0.18	10.1	0.0	0.23	9.7	0.0	1.1	1	0	0	1	1	1	0	Site-specific	recombinase
MMR_HSR1	PF01926.23	gi|296242199|ref|YP_003649686.1|	-	0.23	11.6	3.2	5.9	7.0	0.1	2.8	3	0	0	3	3	2	0	50S	ribosome-binding	GTPase
AAA_13	PF13166.6	gi|296242199|ref|YP_003649686.1|	-	0.25	9.9	1.6	1.6	7.3	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
AAA_17	PF13207.6	gi|296242199|ref|YP_003649686.1|	-	0.3	11.5	1.6	3.8	7.9	0.2	2.9	2	1	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|296242199|ref|YP_003649686.1|	-	0.77	10.0	0.1	0.77	10.0	0.1	2.6	3	0	0	3	3	2	0	AAA	domain
CbiQ	PF02361.16	gi|296242200|ref|YP_003649687.1|	-	7e-10	38.9	12.9	9.9e-10	38.4	12.9	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
ABC_cobalt	PF09819.9	gi|296242201|ref|YP_003649688.1|	-	9.8e-35	119.3	9.1	9.8e-35	119.3	9.1	1.7	2	0	0	2	2	2	1	ABC-type	cobalt	transport	system,	permease	component
DUF5518	PF17647.1	gi|296242201|ref|YP_003649688.1|	-	0.49	10.6	19.3	0.021	14.9	6.5	2.2	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5518)
ATP_bind_3	PF01171.20	gi|296242202|ref|YP_003649689.1|	-	1.7e-13	50.8	0.0	8.6e-13	48.4	0.0	1.9	1	1	0	1	1	1	1	PP-loop	family
zn-ribbon_14	PF16503.5	gi|296242202|ref|YP_003649689.1|	-	8.7e-06	25.1	2.5	8.7e-06	25.1	2.5	2.0	2	0	0	2	2	2	1	Zinc-ribbon
CTU2	PF10288.9	gi|296242202|ref|YP_003649689.1|	-	0.052	13.8	0.0	0.14	12.4	0.0	1.7	1	0	0	1	1	1	0	Cytoplasmic	tRNA	2-thiolation	protein	2
PAPS_reduct	PF01507.19	gi|296242202|ref|YP_003649689.1|	-	0.055	13.5	0.0	0.099	12.7	0.0	1.4	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
YyzF	PF14116.6	gi|296242202|ref|YP_003649689.1|	-	1.3	9.1	5.8	1.7	8.8	0.2	3.1	3	0	0	3	3	3	0	YyzF-like	protein
SNARE_assoc	PF09335.11	gi|296242203|ref|YP_003649690.1|	-	2.8e-11	44.0	4.1	2.8e-11	44.0	4.1	2.4	2	1	1	3	3	3	1	SNARE	associated	Golgi	protein
MS_channel	PF00924.18	gi|296242204|ref|YP_003649691.1|	-	4.2e-14	52.6	11.1	4.2e-14	52.6	11.1	2.9	2	1	1	3	3	3	1	Mechanosensitive	ion	channel
DUF5359	PF17313.2	gi|296242204|ref|YP_003649691.1|	-	0.038	14.0	2.4	0.038	14.0	2.4	2.4	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5359)
PIG-P	PF08510.12	gi|296242204|ref|YP_003649691.1|	-	0.22	11.4	5.5	0.37	10.7	5.5	1.3	1	0	0	1	1	1	0	PIG-P
PRA1	PF03208.19	gi|296242204|ref|YP_003649691.1|	-	0.6	9.7	5.7	1.3	8.6	5.7	1.6	1	0	0	1	1	1	0	PRA1	family	protein
DSPc	PF00782.20	gi|296242206|ref|YP_003649693.1|	-	1.2e-12	47.7	0.0	7.2e-12	45.3	0.0	1.9	2	0	0	2	2	2	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.27	gi|296242206|ref|YP_003649693.1|	-	0.00037	20.1	0.0	0.00058	19.5	0.0	1.3	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
CDKN3	PF05706.12	gi|296242206|ref|YP_003649693.1|	-	0.0015	18.2	0.5	0.0042	16.8	0.1	2.0	2	2	0	2	2	2	1	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
HEM4	PF02602.15	gi|296242206|ref|YP_003649693.1|	-	0.083	12.2	0.0	0.19	11.0	0.0	1.6	2	0	0	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
RAP	PF08373.10	gi|296242206|ref|YP_003649693.1|	-	0.11	12.6	0.0	0.28	11.3	0.0	1.6	1	0	0	1	1	1	0	RAP	domain
AIRS	PF00586.24	gi|296242207|ref|YP_003649694.1|	-	2.3e-15	57.0	0.0	1.1e-14	54.9	0.0	2.2	1	1	1	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
Polysacc_synt	PF01943.17	gi|296242208|ref|YP_003649695.1|	-	3.1e-16	59.6	26.2	3.1e-16	59.6	26.2	3.0	2	1	1	3	3	3	2	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|296242208|ref|YP_003649695.1|	-	7e-11	41.9	13.2	7e-11	41.9	13.2	2.4	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|296242208|ref|YP_003649695.1|	-	4.1e-07	30.2	54.1	1.3e-06	28.5	24.5	3.5	3	1	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
DUF3007	PF11460.8	gi|296242208|ref|YP_003649695.1|	-	0.015	15.5	0.2	0.015	15.5	0.2	3.2	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF3007)
MoeA_N	PF03453.17	gi|296242209|ref|YP_003649696.1|	-	8.2e-39	132.9	0.1	1.3e-38	132.2	0.1	1.3	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|296242209|ref|YP_003649696.1|	-	1.2e-23	83.4	0.0	2e-23	82.6	0.0	1.5	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|296242209|ref|YP_003649696.1|	-	9.9e-16	57.7	0.0	3.6e-15	55.9	0.0	2.0	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
Radical_SAM_C	PF16199.5	gi|296242210|ref|YP_003649697.1|	-	3e-26	91.2	0.4	6.7e-26	90.1	0.4	1.6	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Radical_SAM	PF04055.21	gi|296242210|ref|YP_003649697.1|	-	1.3e-25	90.7	0.1	3.6e-25	89.3	0.0	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.25	gi|296242210|ref|YP_003649697.1|	-	2.4e-08	34.2	0.2	6.1e-08	32.9	0.2	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|296242210|ref|YP_003649697.1|	-	0.00026	20.9	0.0	0.00077	19.4	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Fe-ADH	PF00465.19	gi|296242211|ref|YP_003649698.1|	-	1.4e-82	277.4	0.0	1.7e-82	277.2	0.0	1.0	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|296242211|ref|YP_003649698.1|	-	4.1e-12	46.4	0.1	1.7e-07	31.2	0.0	2.2	2	0	0	2	2	2	2	Iron-containing	alcohol	dehydrogenase
Glyco_trans_2_3	PF13632.6	gi|296242212|ref|YP_003649699.1|	-	2.2e-20	73.4	0.1	3.3e-20	72.8	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|296242212|ref|YP_003649699.1|	-	1.9e-11	44.3	0.0	3.5e-11	43.4	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|296242212|ref|YP_003649699.1|	-	5.6e-05	22.7	0.0	0.0017	17.9	0.0	2.3	2	1	0	2	2	2	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|296242212|ref|YP_003649699.1|	-	0.0096	16.4	0.0	0.02	15.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glycos_transf_2	PF00535.26	gi|296242212|ref|YP_003649699.1|	-	0.028	14.2	0.4	0.1	12.4	0.2	1.8	1	1	1	2	2	2	0	Glycosyl	transferase	family	2
Phage_Cox	PF10743.9	gi|296242214|ref|YP_003649701.1|	-	0.1	12.7	0.0	0.16	12.1	0.0	1.2	1	0	0	1	1	1	0	Regulatory	phage	protein	cox
DNA_pol_B	PF00136.21	gi|296242215|ref|YP_003649702.1|	-	8.3e-19	67.6	0.0	2.2e-18	66.2	0.0	1.6	1	1	0	1	1	1	1	DNA	polymerase	family	B
DUF2258	PF10015.9	gi|296242216|ref|YP_003649703.1|	-	6.1e-27	93.6	0.3	1.7e-26	92.2	0.3	1.7	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
OsmC	PF02566.19	gi|296242217|ref|YP_003649704.1|	-	1.3e-14	54.4	0.0	3.4e-14	53.1	0.0	1.6	2	0	0	2	2	2	1	OsmC-like	protein
Acid_PPase	PF12689.7	gi|296242219|ref|YP_003649706.1|	-	1.1e-09	38.4	0.0	1.3e-09	38.2	0.0	1.2	1	0	0	1	1	1	1	Acid	Phosphatase
HAD_2	PF13419.6	gi|296242219|ref|YP_003649706.1|	-	0.0045	17.1	0.5	0.2	11.7	0.0	2.3	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|296242219|ref|YP_003649706.1|	-	0.025	14.9	0.1	3.4	7.9	0.1	2.1	1	1	1	2	2	2	0	haloacid	dehalogenase-like	hydrolase
PmbA_TldD	PF01523.16	gi|296242220|ref|YP_003649707.1|	-	1.3e-37	130.2	0.0	1.7e-37	129.8	0.0	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.16	gi|296242221|ref|YP_003649708.1|	-	6.4e-46	157.4	0.2	8.7e-46	157.0	0.2	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
Chromate_transp	PF02417.15	gi|296242222|ref|YP_003649709.1|	-	1.9e-40	138.5	13.6	2.4e-40	138.2	13.6	1.0	1	0	0	1	1	1	1	Chromate	transporter
PSRP-3_Ycf65	PF04839.13	gi|296242222|ref|YP_003649709.1|	-	0.007	16.5	0.2	1.2	9.4	0.0	2.3	2	0	0	2	2	2	2	Plastid	and	cyanobacterial	ribosomal	protein	(PSRP-3	/	Ycf65)
DUF872	PF05915.12	gi|296242222|ref|YP_003649709.1|	-	0.047	13.9	3.2	0.084	13.0	3.1	1.5	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF872)
HAD_2	PF13419.6	gi|296242223|ref|YP_003649710.1|	-	2.9e-11	43.8	4.6	4.5e-10	39.9	4.6	2.0	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|296242223|ref|YP_003649710.1|	-	3.6e-08	34.0	0.1	3.5e-05	24.2	0.1	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|296242223|ref|YP_003649710.1|	-	2.8e-05	24.6	0.0	3.9e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Acid_phosphat_B	PF03767.14	gi|296242223|ref|YP_003649710.1|	-	0.0015	18.2	0.1	0.065	12.8	0.0	2.2	2	0	0	2	2	2	1	HAD	superfamily,	subfamily	IIIB	(Acid	phosphatase)
Hydrolase_6	PF13344.6	gi|296242223|ref|YP_003649710.1|	-	0.0027	17.8	0.0	0.016	15.3	0.0	2.1	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|296242223|ref|YP_003649710.1|	-	0.0029	17.4	0.3	0.043	13.6	0.1	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
FLYWCH_u	PF16662.5	gi|296242223|ref|YP_003649710.1|	-	0.032	14.3	0.1	0.095	12.8	0.1	1.8	1	0	0	1	1	1	0	FLYWCH-type	zinc	finger-containing	protein	1
NIF	PF03031.18	gi|296242223|ref|YP_003649710.1|	-	0.099	12.4	0.1	2	8.1	0.0	2.1	2	0	0	2	2	2	0	NLI	interacting	factor-like	phosphatase
Asparaginase_2	PF01112.18	gi|296242224|ref|YP_003649711.1|	-	3.9e-72	242.9	0.0	4.9e-72	242.6	0.0	1.0	1	0	0	1	1	1	1	Asparaginase
dCMP_cyt_deam_1	PF00383.23	gi|296242224|ref|YP_003649711.1|	-	0.012	15.5	0.3	1.2	9.0	0.0	2.6	3	0	0	3	3	3	0	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
TMEM251	PF15190.6	gi|296242225|ref|YP_003649712.1|	-	0.047	13.6	1.6	0.094	12.7	0.1	2.3	2	0	0	2	2	2	0	Transmembrane	protein	251
DUF2518	PF10726.9	gi|296242225|ref|YP_003649712.1|	-	0.82	9.3	4.4	0.29	10.8	0.9	2.1	2	0	0	2	2	2	0	Protein	of	function	(DUF2518)
DUF4234	PF14018.6	gi|296242225|ref|YP_003649712.1|	-	2.8	8.1	7.8	0.96	9.6	2.1	3.1	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4234)
ROK	PF00480.20	gi|296242226|ref|YP_003649713.1|	-	3.3e-54	184.3	0.0	4.1e-54	184.1	0.0	1.0	1	0	0	1	1	1	1	ROK	family
FtsA	PF14450.6	gi|296242226|ref|YP_003649713.1|	-	0.14	12.6	0.0	0.24	11.9	0.0	1.6	1	1	0	1	1	1	0	Cell	division	protein	FtsA
tRNA-synt_1g	PF09334.11	gi|296242227|ref|YP_003649714.1|	-	7.3e-96	321.3	0.8	9.1e-51	172.8	0.0	2.1	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|296242227|ref|YP_003649714.1|	-	1.5e-22	79.7	0.7	6.5e-10	37.9	0.6	4.0	1	1	2	3	3	3	3	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1e	PF01406.19	gi|296242227|ref|YP_003649714.1|	-	7.8e-10	38.6	0.5	5.1e-06	26.1	0.1	2.8	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|296242227|ref|YP_003649714.1|	-	3.7e-06	26.1	0.0	0.0001	21.4	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
Anticodon_1	PF08264.13	gi|296242227|ref|YP_003649714.1|	-	0.0045	17.0	0.1	0.013	15.4	0.0	1.9	2	0	0	2	2	2	1	Anticodon-binding	domain	of	tRNA
HNH_repeat	PF18780.1	gi|296242227|ref|YP_003649714.1|	-	0.029	14.2	0.1	0.062	13.1	0.1	1.6	1	0	0	1	1	1	0	Homing	endonuclease	repeat
IF2_N	PF04760.15	gi|296242227|ref|YP_003649714.1|	-	0.048	13.5	0.0	0.4	10.5	0.0	2.3	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
Radical_SAM	PF04055.21	gi|296242228|ref|YP_003649715.1|	-	3.5e-17	63.3	0.0	5.5e-16	59.4	0.0	2.4	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|296242228|ref|YP_003649715.1|	-	0.013	15.5	0.0	0.62	10.1	0.0	2.4	2	0	0	2	2	2	0	B12	binding	domain
HTH_IclR	PF09339.10	gi|296242230|ref|YP_003649717.1|	-	7.3e-05	22.5	0.9	0.00021	21.0	0.3	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|296242230|ref|YP_003649717.1|	-	0.00013	21.7	0.0	0.00025	20.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|296242230|ref|YP_003649717.1|	-	0.00063	19.8	0.7	0.0044	17.1	0.1	2.4	3	0	0	3	3	3	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|296242230|ref|YP_003649717.1|	-	0.0036	17.1	0.0	0.005	16.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|296242230|ref|YP_003649717.1|	-	0.0038	17.1	0.3	0.0038	17.1	0.3	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|296242230|ref|YP_003649717.1|	-	0.031	14.8	0.0	0.057	13.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|296242230|ref|YP_003649717.1|	-	0.034	14.1	0.0	0.068	13.2	0.0	1.5	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
ATP-synt_10	PF05176.14	gi|296242230|ref|YP_003649717.1|	-	0.1	11.8	0.0	0.12	11.6	0.0	1.1	1	0	0	1	1	1	0	ATP10	protein
HTH_35	PF13693.6	gi|296242230|ref|YP_003649717.1|	-	0.13	12.3	0.3	0.23	11.5	0.3	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
NikR_C	PF08753.11	gi|296242233|ref|YP_003649720.1|	-	1e-26	92.8	0.6	1.6e-26	92.3	0.6	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
AGT	PF11440.8	gi|296242234|ref|YP_003649721.1|	-	0.091	11.8	0.0	0.2	10.7	0.0	1.6	2	0	0	2	2	2	0	DNA	alpha-glucosyltransferase
Fe_dep_repr_C	PF02742.15	gi|296242235|ref|YP_003649722.1|	-	6.9e-18	64.5	0.1	1.4e-17	63.5	0.1	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|296242235|ref|YP_003649722.1|	-	9e-15	54.6	0.2	3.1e-14	52.9	0.1	1.8	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|296242235|ref|YP_003649722.1|	-	6.4e-09	35.6	0.0	1.2e-08	34.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|296242235|ref|YP_003649722.1|	-	1.4e-08	34.5	0.0	3e-08	33.4	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|296242235|ref|YP_003649722.1|	-	4.1e-08	32.7	0.1	7e-08	31.9	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|296242235|ref|YP_003649722.1|	-	5.6e-08	32.5	0.1	1e-07	31.7	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|296242235|ref|YP_003649722.1|	-	1.4e-06	28.0	0.0	2.6e-06	27.2	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|296242235|ref|YP_003649722.1|	-	2.3e-06	27.4	0.3	9.6e-06	25.4	0.2	1.9	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|296242235|ref|YP_003649722.1|	-	5.6e-06	26.2	0.0	1.7e-05	24.7	0.0	1.8	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|296242235|ref|YP_003649722.1|	-	6.5e-06	26.6	0.1	1.7e-05	25.2	0.0	1.7	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|296242235|ref|YP_003649722.1|	-	7.1e-06	25.7	0.1	1.9e-05	24.4	0.1	1.7	1	0	0	1	1	1	1	LexA	DNA	binding	domain
DUF4423	PF14394.6	gi|296242235|ref|YP_003649722.1|	-	7.6e-06	25.7	0.1	1.1e-05	25.2	0.1	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.9	gi|296242235|ref|YP_003649722.1|	-	7.9e-06	25.9	0.2	1.1e-05	25.5	0.2	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_28	PF13518.6	gi|296242235|ref|YP_003649722.1|	-	5.8e-05	23.1	0.0	0.00023	21.2	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|296242235|ref|YP_003649722.1|	-	5.8e-05	22.7	0.1	0.00012	21.7	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.20	gi|296242235|ref|YP_003649722.1|	-	7.8e-05	22.9	0.1	0.00031	21.1	0.1	2.0	1	1	2	3	3	2	1	Transcriptional	regulator
Penicillinase_R	PF03965.16	gi|296242235|ref|YP_003649722.1|	-	0.00019	21.7	0.1	0.00026	21.3	0.1	1.5	1	1	0	1	1	1	1	Penicillinase	repressor
HTH_38	PF13936.6	gi|296242235|ref|YP_003649722.1|	-	0.0002	21.1	0.0	0.0018	18.0	0.0	2.4	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|296242235|ref|YP_003649722.1|	-	0.0003	20.5	0.0	0.0018	18.0	0.0	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_CodY	PF08222.11	gi|296242235|ref|YP_003649722.1|	-	0.00038	19.9	0.0	0.00061	19.3	0.0	1.4	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
IF2_N	PF04760.15	gi|296242235|ref|YP_003649722.1|	-	0.00048	19.9	0.3	0.021	14.7	0.0	2.6	2	0	0	2	2	2	1	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_29	PF13551.6	gi|296242235|ref|YP_003649722.1|	-	0.00056	19.9	0.0	0.0021	18.0	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_45	PF14947.6	gi|296242235|ref|YP_003649722.1|	-	0.00098	19.1	0.1	0.0016	18.4	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
TFIIE_alpha	PF02002.17	gi|296242235|ref|YP_003649722.1|	-	0.0012	18.7	0.4	0.0021	17.9	0.3	1.5	1	1	0	1	1	1	1	TFIIE	alpha	subunit
HTH_10	PF04967.12	gi|296242235|ref|YP_003649722.1|	-	0.0021	17.8	0.0	0.0067	16.2	0.0	1.8	1	1	1	2	2	2	1	HTH	DNA	binding	domain
HTH_36	PF13730.6	gi|296242235|ref|YP_003649722.1|	-	0.0021	17.9	0.1	0.0091	15.9	0.0	2.0	3	0	0	3	3	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|296242235|ref|YP_003649722.1|	-	0.0022	17.6	0.0	0.0044	16.7	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_6	PF01418.17	gi|296242235|ref|YP_003649722.1|	-	0.0022	17.9	0.0	0.004	17.1	0.0	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain,	rpiR	family
HTH_AsnC-type	PF13404.6	gi|296242235|ref|YP_003649722.1|	-	0.0028	17.4	0.0	0.005	16.6	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HemN_C	PF06969.16	gi|296242235|ref|YP_003649722.1|	-	0.0029	17.7	0.1	0.0045	17.0	0.1	1.4	1	0	0	1	1	1	1	HemN	C-terminal	domain
AbiEi_4	PF13338.6	gi|296242235|ref|YP_003649722.1|	-	0.0042	17.2	0.1	0.074	13.2	0.0	2.6	3	0	0	3	3	2	1	Transcriptional	regulator,	AbiEi	antitoxin
HTH_40	PF14493.6	gi|296242235|ref|YP_003649722.1|	-	0.0052	17.2	0.1	0.046	14.2	0.1	2.1	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|296242235|ref|YP_003649722.1|	-	0.0053	16.8	0.0	0.01	15.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|296242235|ref|YP_003649722.1|	-	0.0063	16.7	0.2	0.012	15.8	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TnsD	PF15978.5	gi|296242235|ref|YP_003649722.1|	-	0.0078	15.2	0.0	0.0084	15.1	0.0	1.2	1	0	0	1	1	1	1	Tn7-like	transposition	protein	D
HTH_37	PF13744.6	gi|296242235|ref|YP_003649722.1|	-	0.014	15.3	0.0	0.17	11.9	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
MerR	PF00376.23	gi|296242235|ref|YP_003649722.1|	-	0.015	15.0	0.5	0.15	11.8	0.5	2.3	1	1	0	1	1	1	0	MerR	family	regulatory	protein
Mrr_N	PF14338.6	gi|296242235|ref|YP_003649722.1|	-	0.016	15.4	0.2	0.043	13.9	0.1	1.8	1	1	1	2	2	2	0	Mrr	N-terminal	domain
DUF505	PF04458.12	gi|296242235|ref|YP_003649722.1|	-	0.016	13.6	0.1	0.016	13.6	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
FeoC	PF09012.10	gi|296242235|ref|YP_003649722.1|	-	0.019	15.0	0.0	0.048	13.7	0.0	1.7	2	0	0	2	2	1	0	FeoC	like	transcriptional	regulator
HTH_Tnp_1	PF01527.20	gi|296242235|ref|YP_003649722.1|	-	0.023	15.0	0.1	0.089	13.1	0.1	1.9	1	1	0	1	1	1	0	Transposase
ANT	PF03374.14	gi|296242235|ref|YP_003649722.1|	-	0.024	15.0	0.1	0.86	9.9	0.0	2.3	1	1	1	2	2	2	0	Phage	antirepressor	protein	KilAC	domain
HTH_19	PF12844.7	gi|296242235|ref|YP_003649722.1|	-	0.029	14.4	0.8	0.17	11.9	0.1	2.4	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_22	PF13309.6	gi|296242235|ref|YP_003649722.1|	-	0.039	14.0	0.4	6	7.0	0.3	2.5	1	1	1	2	2	2	0	HTH	domain
HTH_DeoR	PF08220.12	gi|296242235|ref|YP_003649722.1|	-	0.048	13.4	0.0	0.16	11.7	0.0	1.8	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
Terminase_5	PF06056.12	gi|296242235|ref|YP_003649722.1|	-	0.051	13.5	0.0	0.12	12.2	0.0	1.6	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_1	PF00126.27	gi|296242235|ref|YP_003649722.1|	-	0.062	13.3	0.0	0.17	11.9	0.0	1.8	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_47	PF16221.5	gi|296242235|ref|YP_003649722.1|	-	0.1	12.2	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	winged	helix-turn-helix
Thioredoxin_3	PF13192.6	gi|296242236|ref|YP_003649723.1|	-	3.4e-09	36.6	0.1	1.8e-07	31.1	0.4	2.4	2	0	0	2	2	2	1	Thioredoxin	domain
Thioredoxin_9	PF14595.6	gi|296242236|ref|YP_003649723.1|	-	8.5e-05	22.3	0.1	0.00024	20.9	0.1	1.7	2	1	0	2	2	2	1	Thioredoxin
Glutaredoxin	PF00462.24	gi|296242236|ref|YP_003649723.1|	-	0.0001	22.4	1.0	0.00021	21.4	0.2	1.9	2	0	0	2	2	2	1	Glutaredoxin
Thioredoxin_2	PF13098.6	gi|296242236|ref|YP_003649723.1|	-	0.019	15.4	0.6	0.48	10.9	0.8	2.8	2	1	0	2	2	2	0	Thioredoxin-like	domain
DUF836	PF05768.14	gi|296242236|ref|YP_003649723.1|	-	0.058	13.8	0.1	0.93	9.9	0.0	2.2	2	0	0	2	2	2	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin	PF00085.20	gi|296242236|ref|YP_003649723.1|	-	0.099	12.6	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Thioredoxin
ABC_transp_aux	PF09822.9	gi|296242236|ref|YP_003649723.1|	-	0.1	12.0	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	ABC-type	uncharacterized	transport	system
HTH_45	PF14947.6	gi|296242237|ref|YP_003649724.1|	-	6.7e-06	26.0	0.6	1.8e-05	24.6	0.6	1.9	1	0	0	1	1	1	1	Winged	helix-turn-helix
Rrf2	PF02082.20	gi|296242237|ref|YP_003649724.1|	-	9.7e-06	25.9	0.2	4.2e-05	23.8	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
DUF4423	PF14394.6	gi|296242237|ref|YP_003649724.1|	-	0.00029	20.6	0.0	0.028	14.1	0.0	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
Ribosomal_S19e	PF01090.19	gi|296242237|ref|YP_003649724.1|	-	0.0019	17.9	0.0	0.0035	17.0	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S19e
Fib_alpha	PF08702.10	gi|296242237|ref|YP_003649724.1|	-	0.0028	17.8	3.4	0.0049	17.0	3.4	1.3	1	0	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
HSBP1	PF06825.12	gi|296242237|ref|YP_003649724.1|	-	0.011	15.6	1.1	0.026	14.4	1.1	1.6	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
Cas_CT1975	PF09344.10	gi|296242237|ref|YP_003649724.1|	-	0.012	15.1	0.2	0.015	14.8	0.2	1.1	1	0	0	1	1	1	0	CT1975-like	protein
DUF4364	PF14277.6	gi|296242237|ref|YP_003649724.1|	-	0.012	15.3	1.9	0.019	14.7	0.8	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4364)
HTH_IclR	PF09339.10	gi|296242237|ref|YP_003649724.1|	-	0.016	15.0	0.0	0.077	12.8	0.0	2.0	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
FapA	PF03961.13	gi|296242237|ref|YP_003649724.1|	-	0.019	13.6	1.5	0.024	13.3	1.5	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Anti-TRAP	PF15777.5	gi|296242237|ref|YP_003649724.1|	-	0.026	14.5	0.0	0.092	12.7	0.0	1.8	2	0	0	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
HTH_46	PF15977.5	gi|296242237|ref|YP_003649724.1|	-	0.045	13.8	1.3	0.2	11.7	0.0	2.6	3	0	0	3	3	2	0	Winged	helix-turn-helix	DNA	binding
HemN_C	PF06969.16	gi|296242237|ref|YP_003649724.1|	-	0.052	13.6	0.0	0.38	10.8	0.0	2.2	2	0	0	2	2	2	0	HemN	C-terminal	domain
Exonuc_VII_L	PF02601.15	gi|296242237|ref|YP_003649724.1|	-	0.066	12.8	0.9	0.073	12.6	0.9	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
FaeA	PF04703.12	gi|296242237|ref|YP_003649724.1|	-	0.074	13.4	0.0	0.2	12.0	0.0	1.7	1	0	0	1	1	1	0	FaeA-like	protein
FlaC_arch	PF05377.11	gi|296242237|ref|YP_003649724.1|	-	0.13	12.7	1.4	0.19	12.1	0.2	1.9	2	0	0	2	2	1	0	Flagella	accessory	protein	C	(FlaC)
PHM7_cyt	PF14703.6	gi|296242237|ref|YP_003649724.1|	-	0.13	12.5	3.8	0.26	11.5	3.8	1.5	1	1	0	1	1	1	0	Cytosolic	domain	of	10TM	putative	phosphate	transporter
Atg14	PF10186.9	gi|296242237|ref|YP_003649724.1|	-	0.18	10.9	5.3	0.25	10.4	5.3	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
IFT57	PF10498.9	gi|296242237|ref|YP_003649724.1|	-	0.22	10.5	6.4	0.35	9.8	6.4	1.2	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
CdvA	PF18822.1	gi|296242237|ref|YP_003649724.1|	-	0.27	11.1	9.7	0.096	12.5	4.7	2.2	2	0	0	2	2	2	0	CdvA-like	coiled-coil	domain
Osmo_CC	PF08946.10	gi|296242237|ref|YP_003649724.1|	-	0.49	10.7	4.3	0.18	12.0	1.2	1.9	2	0	0	2	2	1	0	Osmosensory	transporter	coiled	coil
Prefoldin_2	PF01920.20	gi|296242237|ref|YP_003649724.1|	-	0.5	10.3	6.6	0.21	11.6	2.6	2.2	1	1	1	2	2	2	0	Prefoldin	subunit
DUF1664	PF07889.12	gi|296242237|ref|YP_003649724.1|	-	0.88	9.6	3.0	0.76	9.8	1.2	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
V_ATPase_I	PF01496.19	gi|296242237|ref|YP_003649724.1|	-	1.5	6.6	6.6	3.5	5.4	6.6	1.6	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
XhlA	PF10779.9	gi|296242237|ref|YP_003649724.1|	-	1.8	8.8	4.4	1	9.6	1.0	2.1	1	1	0	2	2	2	0	Haemolysin	XhlA
DUF5446	PF17522.2	gi|296242237|ref|YP_003649724.1|	-	3.9	7.7	8.3	0.74	10.0	3.2	2.5	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5446)
ParBc	PF02195.18	gi|296242238|ref|YP_003649725.1|	-	1e-08	35.3	0.1	0.0028	17.9	0.0	2.4	2	0	0	2	2	2	2	ParB-like	nuclease	domain
ParBc_2	PF08857.11	gi|296242238|ref|YP_003649725.1|	-	2.4e-05	24.5	0.5	0.12	12.5	0.0	3.2	2	1	1	3	3	3	3	Putative	ParB-like	nuclease
Wyosine_form	PF08608.12	gi|296242239|ref|YP_003649726.1|	-	2.4e-19	69.4	0.0	4.9e-19	68.4	0.0	1.6	1	0	0	1	1	1	1	Wyosine	base	formation
Radical_SAM	PF04055.21	gi|296242239|ref|YP_003649726.1|	-	3.3e-19	69.9	0.0	1.7e-18	67.6	0.0	2.0	1	1	0	1	1	1	1	Radical	SAM	superfamily
Hydrolase	PF00702.26	gi|296242239|ref|YP_003649726.1|	-	0.16	12.3	0.0	0.9	9.8	0.0	1.9	1	1	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
FMN_red	PF03358.15	gi|296242240|ref|YP_003649727.1|	-	1.3e-26	93.2	0.0	1.7e-26	92.8	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|296242240|ref|YP_003649727.1|	-	1.1e-14	54.7	0.0	2e-14	53.8	0.0	1.4	1	0	0	1	1	1	1	Flavodoxin-like	fold
DUF357	PF04010.13	gi|296242241|ref|YP_003649728.1|	-	4.7e-19	68.2	0.8	7.4e-19	67.6	0.8	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
CTP_transf_like	PF01467.26	gi|296242241|ref|YP_003649728.1|	-	6.3e-12	45.9	0.0	4.6e-11	43.1	0.0	2.0	1	1	1	2	2	2	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|296242241|ref|YP_003649728.1|	-	0.1	12.5	0.0	0.49	10.3	0.0	2.2	1	1	1	2	2	2	0	FAD	synthetase
Orn_Arg_deC_N	PF02784.16	gi|296242242|ref|YP_003649729.1|	-	1.6e-25	90.0	0.0	2.3e-25	89.4	0.0	1.2	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Radical_SAM	PF04055.21	gi|296242243|ref|YP_003649730.1|	-	3.8e-18	66.4	0.0	9.1e-17	61.9	0.0	2.7	2	1	1	3	3	3	1	Radical	SAM	superfamily
HypD	PF01924.16	gi|296242244|ref|YP_003649731.1|	-	3.4e-128	427.6	0.0	4.4e-128	427.3	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	formation	hypA	family
zf-RING_6	PF14835.6	gi|296242244|ref|YP_003649731.1|	-	0.071	13.0	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	zf-RING	of	BARD1-type	protein
NTP_transf_3	PF12804.7	gi|296242245|ref|YP_003649732.1|	-	8.8e-29	100.9	0.0	1.1e-28	100.7	0.0	1.0	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|296242245|ref|YP_003649732.1|	-	1.4e-05	25.0	0.0	1.7e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.19	gi|296242245|ref|YP_003649732.1|	-	0.00014	21.9	0.0	0.0002	21.3	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
NTP_transferase	PF00483.23	gi|296242245|ref|YP_003649732.1|	-	0.033	13.7	0.0	0.046	13.3	0.0	1.2	1	0	0	1	1	1	0	Nucleotidyl	transferase
HsbA	PF12296.8	gi|296242245|ref|YP_003649732.1|	-	0.089	13.2	0.0	14	6.1	0.0	2.5	3	0	0	3	3	3	0	Hydrophobic	surface	binding	protein	A
PhoU_div	PF01865.16	gi|296242246|ref|YP_003649733.1|	-	1.2e-29	103.2	9.8	1.4e-29	103.0	9.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.19	gi|296242246|ref|YP_003649733.1|	-	0.00027	21.3	0.7	0.00027	21.3	0.7	2.6	2	2	0	2	2	2	1	PhoU	domain
PKcGMP_CC	PF16808.5	gi|296242246|ref|YP_003649733.1|	-	0.034	14.0	1.4	0.1	12.5	1.4	1.8	1	0	0	1	1	1	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Pro_sub2	PF18513.1	gi|296242246|ref|YP_003649733.1|	-	0.065	13.4	1.2	0.16	12.2	0.1	2.3	2	2	1	3	3	3	0	Prodomain	subtilisin	2
FolB	PF02152.18	gi|296242246|ref|YP_003649733.1|	-	0.17	12.4	2.6	0.67	10.5	0.1	2.8	2	2	2	4	4	4	0	Dihydroneopterin	aldolase
TrmB	PF01978.19	gi|296242247|ref|YP_003649734.1|	-	2.9e-06	27.1	2.2	6.1e-05	22.8	0.4	2.5	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
CYTH	PF01928.21	gi|296242247|ref|YP_003649734.1|	-	0.0048	16.8	0.0	0.0061	16.5	0.0	1.2	1	0	0	1	1	1	1	CYTH	domain
Rrf2	PF02082.20	gi|296242247|ref|YP_003649734.1|	-	0.007	16.7	0.2	4.6	7.7	0.0	2.1	2	0	0	2	2	2	2	Transcriptional	regulator
UBA_6	PF18039.1	gi|296242247|ref|YP_003649734.1|	-	0.0082	16.1	0.0	0.014	15.3	0.0	1.4	1	0	0	1	1	1	1	UBA-like	domain
PI-TkoII_IV	PF18714.1	gi|296242247|ref|YP_003649734.1|	-	0.031	13.7	0.1	0.048	13.1	0.1	1.3	1	0	0	1	1	1	0	DNA	polymerase	II	intein	Domain	IV
DUF211	PF02680.14	gi|296242249|ref|YP_003649736.1|	-	8.1e-33	112.5	2.7	8.8e-33	112.3	2.7	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
Acetate_kinase	PF00871.17	gi|296242249|ref|YP_003649736.1|	-	0.0093	14.7	0.0	0.011	14.5	0.0	1.0	1	0	0	1	1	1	1	Acetokinase	family
ID	PF18543.1	gi|296242249|ref|YP_003649736.1|	-	0.036	14.1	0.3	0.05	13.6	0.3	1.3	1	0	0	1	1	1	0	Intracellular	delivery	domain
HMA	PF00403.26	gi|296242249|ref|YP_003649736.1|	-	0.065	13.7	2.8	0.31	11.5	2.8	1.9	1	1	0	1	1	1	0	Heavy-metal-associated	domain
WaaY	PF06176.11	gi|296242250|ref|YP_003649737.1|	-	0.023	14.3	0.0	0.038	13.6	0.0	1.4	1	1	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Metallophos_2	PF12850.7	gi|296242251|ref|YP_003649738.1|	-	1.5e-18	67.6	0.0	2e-18	67.1	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|296242251|ref|YP_003649738.1|	-	0.00037	21.1	0.4	0.011	16.2	0.1	2.1	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
ABC_tran	PF00005.27	gi|296242252|ref|YP_003649739.1|	-	1.4e-34	119.5	0.0	2.5e-34	118.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|296242252|ref|YP_003649739.1|	-	2.9e-09	37.0	0.1	6.6e-08	32.6	0.0	3.0	4	0	0	4	4	4	1	TOBE	domain
AAA_21	PF13304.6	gi|296242252|ref|YP_003649739.1|	-	2.7e-08	34.0	0.3	0.00013	21.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RNA_helicase	PF00910.22	gi|296242252|ref|YP_003649739.1|	-	0.00088	19.6	0.0	0.0016	18.8	0.0	1.4	1	0	0	1	1	1	1	RNA	helicase
Rad17	PF03215.15	gi|296242252|ref|YP_003649739.1|	-	0.0048	16.8	0.0	0.013	15.4	0.0	1.5	1	1	0	1	1	1	1	Rad17	P-loop	domain
AAA	PF00004.29	gi|296242252|ref|YP_003649739.1|	-	0.0071	16.8	0.2	0.067	13.6	0.2	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|296242252|ref|YP_003649739.1|	-	0.016	15.5	2.0	0.22	11.8	2.0	2.2	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|296242252|ref|YP_003649739.1|	-	0.05	13.0	0.3	0.18	11.2	0.3	1.8	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
TniB	PF05621.11	gi|296242252|ref|YP_003649739.1|	-	0.13	11.7	0.2	0.79	9.1	0.1	1.9	2	0	0	2	2	2	0	Bacterial	TniB	protein
AAA_28	PF13521.6	gi|296242252|ref|YP_003649739.1|	-	0.15	12.3	0.0	0.66	10.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|296242252|ref|YP_003649739.1|	-	0.15	12.5	3.9	0.35	11.3	3.9	1.8	1	1	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|296242253|ref|YP_003649740.1|	-	1.2e-18	67.5	38.5	3.2e-12	46.6	16.2	4.8	4	1	0	4	4	4	3	Binding-protein-dependent	transport	system	inner	membrane	component
Sterol_MT_C	PF08498.10	gi|296242253|ref|YP_003649740.1|	-	0.043	14.1	0.0	0.12	12.8	0.0	1.7	1	0	0	1	1	1	0	Sterol	methyltransferase	C-terminal
SBP_bac_8	PF13416.6	gi|296242254|ref|YP_003649741.1|	-	1.7e-15	57.6	0.1	9.5e-15	55.1	0.0	1.9	1	1	1	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|296242254|ref|YP_003649741.1|	-	9.4e-15	54.7	0.0	7.6e-14	51.7	0.0	2.0	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|296242254|ref|YP_003649741.1|	-	2.1e-10	41.0	0.4	6.2e-10	39.5	0.4	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|296242254|ref|YP_003649741.1|	-	0.00024	20.9	0.0	0.00089	19.1	0.0	1.9	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
MGC-24	PF05283.11	gi|296242254|ref|YP_003649741.1|	-	0.78	10.2	3.5	1.3	9.4	3.5	1.3	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
Glucodextran_C	PF09985.9	gi|296242255|ref|YP_003649742.1|	-	5e-75	251.9	0.2	5e-75	251.9	0.2	1.6	2	0	0	2	2	2	1	C-terminal	binding-module,	SLH-like,	of	glucodextranase
ABC_transp_aux	PF09822.9	gi|296242255|ref|YP_003649742.1|	-	0.0011	18.5	0.0	0.0024	17.4	0.0	1.5	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
DUF4350	PF14258.6	gi|296242255|ref|YP_003649742.1|	-	0.0056	17.1	1.8	0.013	15.9	0.0	2.6	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4350)
Insulin_TMD	PF17870.1	gi|296242255|ref|YP_003649742.1|	-	0.16	12.1	3.7	0.1	12.7	1.0	2.1	2	0	0	2	2	2	0	Insulin	receptor	trans-membrane	segment
EssA	PF10661.9	gi|296242255|ref|YP_003649742.1|	-	0.19	11.5	4.2	0.35	10.7	4.2	1.4	1	0	0	1	1	1	0	WXG100	protein	secretion	system	(Wss),	protein	EssA
Gmad2	PF10648.9	gi|296242255|ref|YP_003649742.1|	-	0.3	11.4	3.5	0.62	10.3	3.5	1.5	1	0	0	1	1	1	0	Immunoglobulin-like	domain	of	bacterial	spore	germination
Metallophos	PF00149.28	gi|296242256|ref|YP_003649743.1|	-	1.8e-15	58.0	0.4	3.4e-15	57.1	0.4	1.5	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|296242256|ref|YP_003649743.1|	-	5.5e-05	23.4	0.0	0.00077	19.7	0.0	2.3	2	1	0	2	2	2	1	Calcineurin-like	phosphoesterase	superfamily	domain
TMEM154	PF15102.6	gi|296242256|ref|YP_003649743.1|	-	0.079	12.9	6.6	0.16	11.8	6.6	1.5	1	0	0	1	1	1	0	TMEM154	protein	family
DUF3149	PF11346.8	gi|296242256|ref|YP_003649743.1|	-	3.7	7.2	6.7	9.2	6.0	6.7	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3149)
Hjc	PF01870.18	gi|296242257|ref|YP_003649744.1|	-	6.7e-30	102.9	0.1	1.1e-29	102.2	0.1	1.4	2	0	0	2	2	2	1	Archaeal	holliday	junction	resolvase	(hjc)
RecU	PF03838.14	gi|296242257|ref|YP_003649744.1|	-	0.0032	17.5	0.0	0.0039	17.2	0.0	1.2	1	0	0	1	1	1	1	Recombination	protein	U
RHH_3	PF12651.7	gi|296242257|ref|YP_003649744.1|	-	0.037	14.0	0.0	0.69	9.9	0.1	2.2	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
Thiamine_BP	PF01910.17	gi|296242258|ref|YP_003649745.1|	-	1.6e-23	82.4	0.3	1.8e-23	82.3	0.3	1.0	1	0	0	1	1	1	1	Thiamine-binding	protein
Radical_SAM	PF04055.21	gi|296242258|ref|YP_003649745.1|	-	0.0023	18.3	0.0	0.0026	18.2	0.0	1.1	1	0	0	1	1	1	1	Radical	SAM	superfamily
MycE_N	PF17843.1	gi|296242258|ref|YP_003649745.1|	-	0.02	15.4	0.1	0.027	14.9	0.1	1.2	1	0	0	1	1	1	0	MycE	methyltransferase	N-terminal
PPR_3	PF13812.6	gi|296242258|ref|YP_003649745.1|	-	0.024	14.7	0.0	0.038	14.1	0.0	1.3	1	0	0	1	1	1	0	Pentatricopeptide	repeat	domain
Amdase	PF17645.1	gi|296242258|ref|YP_003649745.1|	-	0.064	12.9	0.0	0.077	12.6	0.0	1.1	1	0	0	1	1	1	0	Arylmalonate	decarboxylase
Hydrolase_4	PF12146.8	gi|296242259|ref|YP_003649746.1|	-	1.3e-55	188.3	0.0	1.6e-55	188.0	0.0	1.0	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|296242259|ref|YP_003649746.1|	-	3.8e-23	82.5	0.2	3.7e-15	56.3	0.2	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|296242259|ref|YP_003649746.1|	-	1.4e-17	65.1	0.0	2e-17	64.6	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_2	PF02230.16	gi|296242259|ref|YP_003649746.1|	-	3.6e-11	43.3	0.0	0.00031	20.6	0.0	2.9	3	0	0	3	3	3	2	Phospholipase/Carboxylesterase
Peptidase_S9	PF00326.21	gi|296242259|ref|YP_003649746.1|	-	3.9e-08	33.0	0.0	0.0018	17.8	0.0	2.1	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
AXE1	PF05448.12	gi|296242259|ref|YP_003649746.1|	-	6.3e-06	25.1	0.8	0.02	13.6	0.0	3.0	2	1	1	3	3	3	1	Acetyl	xylan	esterase	(AXE1)
BAAT_C	PF08840.11	gi|296242259|ref|YP_003649746.1|	-	6.6e-06	26.2	0.0	1.2e-05	25.4	0.0	1.3	1	0	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DLH	PF01738.18	gi|296242259|ref|YP_003649746.1|	-	8.9e-06	25.4	0.0	0.017	14.7	0.0	2.2	2	0	0	2	2	2	2	Dienelactone	hydrolase	family
FSH1	PF03959.13	gi|296242259|ref|YP_003649746.1|	-	1.1e-05	25.2	0.0	1.6e-05	24.7	0.0	1.2	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
PGAP1	PF07819.13	gi|296242259|ref|YP_003649746.1|	-	2.1e-05	24.4	0.0	4.5e-05	23.3	0.0	1.5	2	0	0	2	2	2	1	PGAP1-like	protein
PAF-AH_p_II	PF03403.13	gi|296242259|ref|YP_003649746.1|	-	0.00044	18.9	0.2	0.029	12.9	0.1	2.1	2	0	0	2	2	2	1	Platelet-activating	factor	acetylhydrolase,	isoform	II
Esterase	PF00756.20	gi|296242259|ref|YP_003649746.1|	-	0.00073	19.3	0.0	0.00092	18.9	0.0	1.2	1	0	0	1	1	1	1	Putative	esterase
Abhydrolase_5	PF12695.7	gi|296242259|ref|YP_003649746.1|	-	0.0012	18.6	0.1	1.2	8.8	0.0	2.5	3	0	0	3	3	3	2	Alpha/beta	hydrolase	family
LIDHydrolase	PF10230.9	gi|296242259|ref|YP_003649746.1|	-	0.0036	16.9	0.0	0.012	15.2	0.0	1.8	2	1	0	2	2	2	1	Lipid-droplet	associated	hydrolase
LCAT	PF02450.15	gi|296242259|ref|YP_003649746.1|	-	0.035	13.3	0.0	0.069	12.3	0.0	1.4	2	0	0	2	2	2	0	Lecithin:cholesterol	acyltransferase
Lipase_3	PF01764.25	gi|296242259|ref|YP_003649746.1|	-	0.057	13.3	0.0	0.17	11.7	0.0	1.7	2	0	0	2	2	2	0	Lipase	(class	3)
Abhydrolase_3	PF07859.13	gi|296242259|ref|YP_003649746.1|	-	0.086	12.7	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	alpha/beta	hydrolase	fold
DUF1749	PF08538.10	gi|296242259|ref|YP_003649746.1|	-	0.11	11.5	0.0	8	5.5	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1749)
Abhydrolase_4	PF08386.10	gi|296242259|ref|YP_003649746.1|	-	0.16	12.1	0.0	0.28	11.3	0.0	1.4	1	0	0	1	1	1	0	TAP-like	protein
Gln-synt_C	PF00120.24	gi|296242260|ref|YP_003649747.1|	-	2e-94	316.5	0.0	2.3e-94	316.2	0.0	1.0	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|296242260|ref|YP_003649747.1|	-	1.9e-07	30.7	0.0	4.5e-07	29.5	0.0	1.6	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
AsnC_trans_reg	PF01037.21	gi|296242261|ref|YP_003649748.1|	-	1.8e-15	56.7	0.1	2.9e-15	56.0	0.1	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|296242261|ref|YP_003649748.1|	-	4.4e-14	51.8	0.3	7.1e-14	51.1	0.3	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|296242261|ref|YP_003649748.1|	-	1.8e-10	40.4	0.0	3.3e-10	39.6	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|296242261|ref|YP_003649748.1|	-	4.1e-06	26.5	0.0	8.2e-06	25.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|296242261|ref|YP_003649748.1|	-	0.00083	19.4	0.0	0.0018	18.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
RuvB_C	PF05491.13	gi|296242261|ref|YP_003649748.1|	-	0.0014	18.5	0.3	0.0059	16.5	0.0	2.1	2	1	1	3	3	3	1	RuvB	C-terminal	winged	helix	domain
HTH_5	PF01022.20	gi|296242261|ref|YP_003649748.1|	-	0.0032	17.3	0.0	0.0067	16.3	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|296242261|ref|YP_003649748.1|	-	0.0036	17.2	0.1	0.0067	16.3	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|296242261|ref|YP_003649748.1|	-	0.007	16.2	0.0	0.012	15.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|296242261|ref|YP_003649748.1|	-	0.03	14.8	0.1	0.062	13.8	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2655	PF10848.8	gi|296242261|ref|YP_003649748.1|	-	0.05	13.9	0.0	0.085	13.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2655)
HTH_23	PF13384.6	gi|296242261|ref|YP_003649748.1|	-	0.065	13.1	0.0	0.12	12.2	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF2250	PF10007.9	gi|296242261|ref|YP_003649748.1|	-	0.074	13.2	0.1	0.12	12.5	0.1	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
ACT_5	PF13710.6	gi|296242261|ref|YP_003649748.1|	-	0.076	12.9	0.0	0.18	11.7	0.0	1.6	1	0	0	1	1	1	0	ACT	domain
HTH_36	PF13730.6	gi|296242261|ref|YP_003649748.1|	-	0.13	12.3	0.0	0.23	11.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Trypsin_2	PF13365.6	gi|296242262|ref|YP_003649749.1|	-	2.7e-28	99.7	2.4	3.8e-28	99.3	2.4	1.2	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.26	gi|296242262|ref|YP_003649749.1|	-	5.6e-17	62.3	0.1	1.4e-16	61.0	0.1	1.6	1	1	0	1	1	1	1	Trypsin
PDZ_6	PF17820.1	gi|296242262|ref|YP_003649749.1|	-	1.5e-11	43.9	0.2	3.4e-10	39.6	0.0	2.8	3	0	0	3	3	3	1	PDZ	domain
PDZ_2	PF13180.6	gi|296242262|ref|YP_003649749.1|	-	1.6e-09	37.9	0.1	4.9e-09	36.4	0.0	1.9	2	0	0	2	2	2	1	PDZ	domain
PDZ	PF00595.24	gi|296242262|ref|YP_003649749.1|	-	1.2e-05	25.6	0.0	0.00012	22.3	0.0	2.4	2	0	0	2	2	2	1	PDZ	domain
Peptidase_S46	PF10459.9	gi|296242262|ref|YP_003649749.1|	-	0.0098	14.6	0.4	0.69	8.5	0.1	2.1	2	0	0	2	2	2	2	Peptidase	S46
SDF	PF00375.18	gi|296242263|ref|YP_003649750.1|	-	6.6e-96	321.7	46.8	7.5e-96	321.5	46.8	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
DMT_6	PF04342.12	gi|296242265|ref|YP_003649752.1|	-	0.23	11.7	5.5	0.32	11.2	5.5	1.3	1	1	0	1	1	1	0	Putative	member	of	DMT	superfamily	(DUF486)
DUF4808	PF16066.5	gi|296242265|ref|YP_003649752.1|	-	0.68	10.5	5.6	3	8.4	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4808)
Rubrerythrin	PF02915.17	gi|296242266|ref|YP_003649753.1|	-	3.1e-05	24.4	6.2	0.0027	18.1	6.2	2.7	1	1	0	1	1	1	1	Rubrerythrin
DUF5482	PF17579.2	gi|296242266|ref|YP_003649753.1|	-	0.013	15.4	0.2	0.025	14.4	0.2	1.5	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5482)
NAF	PF03822.14	gi|296242266|ref|YP_003649753.1|	-	0.034	14.3	1.8	2.2	8.5	0.0	2.3	2	0	0	2	2	2	0	NAF	domain
4HB_MCP_1	PF12729.7	gi|296242266|ref|YP_003649753.1|	-	0.042	13.4	0.2	0.27	10.8	0.0	2.1	2	0	0	2	2	2	0	Four	helix	bundle	sensory	module	for	signal	transduction
SIR4_SID	PF16991.5	gi|296242266|ref|YP_003649753.1|	-	0.058	13.5	0.4	0.08	13.0	0.4	1.2	1	0	0	1	1	1	0	Sir4	SID	domain
COQ7	PF03232.13	gi|296242266|ref|YP_003649753.1|	-	0.13	12.0	1.7	0.26	11.0	1.0	1.7	2	0	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
Aldolase_II	PF00596.21	gi|296242267|ref|YP_003649754.1|	-	2e-50	171.3	0.0	2.3e-50	171.2	0.0	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
T2SSE	PF00437.20	gi|296242268|ref|YP_003649755.1|	-	6.6e-09	35.2	0.0	1.3e-08	34.3	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|296242268|ref|YP_003649755.1|	-	0.00045	20.6	0.0	0.0017	18.8	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_18	PF13238.6	gi|296242268|ref|YP_003649755.1|	-	0.00073	20.1	0.1	0.0027	18.3	0.0	2.1	2	0	0	2	2	1	1	AAA	domain
DnaB_C	PF03796.15	gi|296242268|ref|YP_003649755.1|	-	0.00087	18.7	0.1	0.0094	15.3	0.0	2.3	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
IstB_IS21	PF01695.17	gi|296242268|ref|YP_003649755.1|	-	0.00095	18.9	0.0	0.0016	18.2	0.0	1.3	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA	PF00004.29	gi|296242268|ref|YP_003649755.1|	-	0.0018	18.7	0.1	0.017	15.6	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|296242268|ref|YP_003649755.1|	-	0.0053	16.7	0.0	0.096	12.6	0.0	2.7	2	0	0	2	2	2	1	NTPase
MeaB	PF03308.16	gi|296242268|ref|YP_003649755.1|	-	0.0058	15.6	0.0	0.013	14.5	0.0	1.5	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SRP54	PF00448.22	gi|296242268|ref|YP_003649755.1|	-	0.006	16.2	0.1	0.012	15.2	0.1	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_28	PF13521.6	gi|296242268|ref|YP_003649755.1|	-	0.0067	16.7	0.0	0.014	15.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.12	gi|296242268|ref|YP_003649755.1|	-	0.0071	16.1	0.0	0.016	15.0	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Zeta_toxin	PF06414.12	gi|296242268|ref|YP_003649755.1|	-	0.0073	15.6	0.3	0.018	14.3	0.0	1.7	2	0	0	2	2	1	1	Zeta	toxin
DUF815	PF05673.13	gi|296242268|ref|YP_003649755.1|	-	0.0085	15.3	0.1	0.06	12.5	0.0	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
AAA_25	PF13481.6	gi|296242268|ref|YP_003649755.1|	-	0.0088	15.6	0.0	0.02	14.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|296242268|ref|YP_003649755.1|	-	0.0089	16.1	0.0	0.023	14.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
TsaE	PF02367.17	gi|296242268|ref|YP_003649755.1|	-	0.012	15.6	0.0	0.027	14.5	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|296242268|ref|YP_003649755.1|	-	0.016	15.2	0.1	0.031	14.2	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.14	gi|296242268|ref|YP_003649755.1|	-	0.024	14.6	0.0	0.064	13.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|296242268|ref|YP_003649755.1|	-	0.026	14.7	0.1	0.13	12.4	0.0	2.2	3	0	0	3	3	2	0	AAA	domain
ResIII	PF04851.15	gi|296242268|ref|YP_003649755.1|	-	0.026	14.5	0.0	0.11	12.5	0.0	2.0	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
ATP_bind_1	PF03029.17	gi|296242268|ref|YP_003649755.1|	-	0.04	13.7	0.1	0.066	13.0	0.1	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
RNA_helicase	PF00910.22	gi|296242268|ref|YP_003649755.1|	-	0.04	14.3	0.0	0.19	12.1	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
AAA_30	PF13604.6	gi|296242268|ref|YP_003649755.1|	-	0.045	13.5	0.0	0.15	11.8	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|296242268|ref|YP_003649755.1|	-	0.046	13.4	0.0	0.15	11.8	0.0	1.9	1	1	1	2	2	2	0	Thymidylate	kinase
AAA_22	PF13401.6	gi|296242268|ref|YP_003649755.1|	-	0.05	13.9	0.0	0.23	11.7	0.0	2.1	3	0	0	3	3	2	0	AAA	domain
Sigma54_activat	PF00158.26	gi|296242268|ref|YP_003649755.1|	-	0.068	12.9	0.0	0.26	11.0	0.0	1.8	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|296242268|ref|YP_003649755.1|	-	0.079	12.7	0.0	0.19	11.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|296242268|ref|YP_003649755.1|	-	0.083	13.4	0.0	0.3	11.6	0.0	1.9	2	0	0	2	2	2	0	ABC	transporter
AAA_19	PF13245.6	gi|296242268|ref|YP_003649755.1|	-	0.084	13.2	0.0	0.26	11.6	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
KTI12	PF08433.10	gi|296242268|ref|YP_003649755.1|	-	0.091	12.2	0.0	0.2	11.1	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
Metallophos	PF00149.28	gi|296242269|ref|YP_003649756.1|	-	0.015	15.8	4.2	0.05	14.1	4.1	1.8	1	1	0	1	1	1	0	Calcineurin-like	phosphoesterase
Pex14_N	PF04695.13	gi|296242269|ref|YP_003649756.1|	-	0.041	14.5	10.4	0.1	13.2	10.4	1.7	1	0	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
Pox_polyA_pol_C	PF12629.7	gi|296242269|ref|YP_003649756.1|	-	0.21	11.4	0.6	0.33	10.7	0.6	1.3	1	0	0	1	1	1	0	Poxvirus	poly(A)	polymerase	C-terminal	domain
SOG2	PF10428.9	gi|296242269|ref|YP_003649756.1|	-	0.72	9.0	16.0	1	8.5	16.0	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
ParA	PF10609.9	gi|296242270|ref|YP_003649757.1|	-	0.00013	21.5	0.1	0.00023	20.7	0.1	1.4	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MeaB	PF03308.16	gi|296242270|ref|YP_003649757.1|	-	0.00089	18.3	1.3	0.035	13.1	0.2	2.2	2	0	0	2	2	2	2	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
cobW	PF02492.19	gi|296242270|ref|YP_003649757.1|	-	0.012	15.2	0.0	0.059	13.0	0.0	1.9	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
CbiA	PF01656.23	gi|296242270|ref|YP_003649757.1|	-	0.036	14.1	0.2	0.11	12.6	0.2	1.8	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Zeta_toxin	PF06414.12	gi|296242270|ref|YP_003649757.1|	-	0.056	12.7	0.0	0.1	11.8	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
PPDK_N	PF01326.19	gi|296242271|ref|YP_003649758.1|	-	5.2e-117	390.8	0.1	7.7e-117	390.2	0.1	1.2	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.18	gi|296242271|ref|YP_003649758.1|	-	6.4e-90	301.2	0.0	1.1e-89	300.4	0.0	1.4	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.23	gi|296242271|ref|YP_003649758.1|	-	2.6e-28	97.5	0.8	6.2e-28	96.3	0.8	1.7	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Radical_SAM	PF04055.21	gi|296242271|ref|YP_003649758.1|	-	0.037	14.4	0.1	0.19	12.1	0.0	2.3	2	0	0	2	2	2	0	Radical	SAM	superfamily
Epimerase_2	PF02350.19	gi|296242271|ref|YP_003649758.1|	-	0.056	12.3	0.0	0.13	11.1	0.0	1.5	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
CPSase_L_D2	PF02786.17	gi|296242272|ref|YP_003649759.1|	-	6.7e-66	221.8	0.0	9.6e-66	221.3	0.0	1.2	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_C	PF02785.19	gi|296242272|ref|YP_003649759.1|	-	5.3e-35	119.8	0.0	1e-34	118.8	0.0	1.5	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Biotin_carb_N	PF00289.22	gi|296242272|ref|YP_003649759.1|	-	2.4e-32	111.8	0.0	4.7e-32	110.8	0.0	1.5	1	0	0	1	1	1	1	Biotin	carboxylase,	N-terminal	domain
ATP-grasp	PF02222.22	gi|296242272|ref|YP_003649759.1|	-	1.6e-07	31.1	0.0	3.1e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|296242272|ref|YP_003649759.1|	-	3.6e-07	29.9	0.0	1.1e-06	28.3	0.0	1.9	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
GARS_A	PF01071.19	gi|296242272|ref|YP_003649759.1|	-	8.8e-07	28.9	0.0	1.7e-06	27.9	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
RimK	PF08443.11	gi|296242272|ref|YP_003649759.1|	-	3e-06	27.0	0.0	7.7e-06	25.6	0.0	1.7	1	1	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|296242272|ref|YP_003649759.1|	-	0.0043	16.5	0.0	0.0087	15.5	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|296242272|ref|YP_003649759.1|	-	0.014	15.5	0.0	0.032	14.3	0.0	1.6	1	0	0	1	1	1	0	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|296242272|ref|YP_003649759.1|	-	0.016	14.6	0.0	0.042	13.2	0.0	1.8	1	0	0	1	1	1	0	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|296242272|ref|YP_003649759.1|	-	0.023	14.0	0.0	0.056	12.7	0.0	1.7	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
IF2_N	PF04760.15	gi|296242272|ref|YP_003649759.1|	-	0.032	14.0	0.6	7.5	6.5	0.0	2.6	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
POTRA_TamA_1	PF17243.2	gi|296242272|ref|YP_003649759.1|	-	0.052	13.6	0.0	0.16	12.1	0.0	1.9	1	0	0	1	1	1	0	POTRA	domain	TamA	domain	1
Nif11	PF07862.11	gi|296242272|ref|YP_003649759.1|	-	0.073	13.4	0.0	7.2	7.0	0.0	2.9	2	0	0	2	2	2	0	Nif11	domain
Oxidored_nitro	PF00148.19	gi|296242272|ref|YP_003649759.1|	-	0.08	11.7	0.0	0.32	9.7	0.0	2.0	2	0	0	2	2	2	0	Nitrogenase	component	1	type	Oxidoreductase
DUF4326	PF14216.6	gi|296242272|ref|YP_003649759.1|	-	0.21	12.3	0.1	14	6.4	0.1	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4326)
GHMP_kinases_C	PF08544.13	gi|296242272|ref|YP_003649759.1|	-	1.1	9.7	3.4	40	4.7	0.2	3.5	3	0	0	3	3	3	0	GHMP	kinases	C	terminal
Prok-JAB	PF14464.6	gi|296242273|ref|YP_003649760.1|	-	0.01	15.6	0.0	0.015	15.0	0.0	1.2	1	0	0	1	1	1	0	Prokaryotic	homologs	of	the	JAB	domain
Peptidase_M20	PF01546.28	gi|296242274|ref|YP_003649761.1|	-	1.2e-35	123.1	0.0	1.8e-35	122.6	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|296242274|ref|YP_003649761.1|	-	3.1e-16	59.2	0.0	5.6e-16	58.4	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|296242274|ref|YP_003649761.1|	-	0.0092	15.7	0.0	0.026	14.2	0.0	1.7	2	0	0	2	2	2	1	Peptidase	family	M28
PIF6	PF05341.11	gi|296242274|ref|YP_003649761.1|	-	0.084	13.0	0.0	0.15	12.2	0.0	1.3	1	0	0	1	1	1	0	Per	os	infectivity	factor	6
Fer4_13	PF13370.6	gi|296242275|ref|YP_003649762.1|	-	1.2e-19	70.6	2.9	1.4e-19	70.4	2.9	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|296242275|ref|YP_003649762.1|	-	7.4e-15	55.4	2.2	8.5e-15	55.3	2.2	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_7	PF12838.7	gi|296242275|ref|YP_003649762.1|	-	0.0062	17.1	1.8	0.019	15.6	1.9	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|296242275|ref|YP_003649762.1|	-	0.016	15.0	6.7	0.053	13.3	1.3	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|296242275|ref|YP_003649762.1|	-	0.018	15.1	6.3	0.024	14.7	0.8	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|296242275|ref|YP_003649762.1|	-	0.049	14.2	3.5	0.056	14.0	0.2	2.3	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Cation_efflux	PF01545.21	gi|296242276|ref|YP_003649763.1|	-	1.3e-14	54.4	13.6	2.2e-14	53.7	13.6	1.3	1	1	0	1	1	1	1	Cation	efflux	family
MarC	PF01914.17	gi|296242277|ref|YP_003649764.1|	-	1.4e-44	151.9	15.9	1.7e-44	151.6	15.9	1.1	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
SfLAP	PF11139.8	gi|296242277|ref|YP_003649764.1|	-	0.00023	20.7	9.6	0.0013	18.2	4.3	2.2	2	0	0	2	2	2	2	Sap,	sulfolipid-1-addressing	protein
DUF373	PF04123.13	gi|296242277|ref|YP_003649764.1|	-	8.8	5.7	13.3	8.2	5.8	8.8	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF373)
Amidohydro_1	PF01979.20	gi|296242278|ref|YP_003649765.1|	-	2.4e-23	83.0	0.0	3.2e-23	82.6	0.0	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|296242278|ref|YP_003649765.1|	-	7.7e-10	38.8	0.0	0.00052	19.6	0.0	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
LtuA	PF17446.2	gi|296242278|ref|YP_003649765.1|	-	0.066	13.6	0.0	0.16	12.4	0.0	1.7	1	0	0	1	1	1	0	Late	transcription	unit	A
UPF0051	PF01458.17	gi|296242279|ref|YP_003649766.1|	-	7.9e-42	143.4	1.4	1.1e-41	143.0	1.4	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
Glft2_N	PF17994.1	gi|296242279|ref|YP_003649766.1|	-	0.051	13.5	0.2	0.087	12.7	0.2	1.3	1	0	0	1	1	1	0	Galactofuranosyltransferase	2	N-terminal
tRNA-synt_1	PF00133.22	gi|296242280|ref|YP_003649767.1|	-	5.7e-63	213.1	0.0	1.4e-51	175.5	0.0	2.4	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|296242280|ref|YP_003649767.1|	-	2.5e-20	72.6	0.8	4.8e-10	38.7	0.1	3.0	2	1	1	3	3	3	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|296242280|ref|YP_003649767.1|	-	5.3e-16	58.9	0.1	1.5e-15	57.5	0.1	1.9	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|296242280|ref|YP_003649767.1|	-	9.1e-11	41.6	0.0	4.2e-05	23.0	0.0	2.6	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|296242280|ref|YP_003649767.1|	-	0.00017	20.6	1.9	0.00073	18.6	0.0	2.6	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(K)
YxiJ	PF14176.6	gi|296242280|ref|YP_003649767.1|	-	0.03	14.8	0.0	4.7	7.7	0.0	2.9	2	0	0	2	2	2	0	YxiJ-like	protein
tRNA-synt_1_2	PF13603.6	gi|296242280|ref|YP_003649767.1|	-	0.032	13.7	0.0	0.11	11.9	0.0	1.8	2	0	0	2	2	2	0	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1d	PF00750.19	gi|296242280|ref|YP_003649767.1|	-	0.13	11.2	0.0	0.27	10.1	0.0	1.5	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(R)
PRD	PF00874.20	gi|296242280|ref|YP_003649767.1|	-	0.26	11.6	1.3	2.3	8.6	0.3	3.1	2	1	0	2	2	2	0	PRD	domain
MFS_1	PF07690.16	gi|296242281|ref|YP_003649768.1|	-	1.3e-17	63.8	40.6	8.8e-10	38.0	14.4	2.4	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
tRNA-synt_1f	PF01921.18	gi|296242282|ref|YP_003649769.1|	-	3.8e-90	302.4	0.0	4.8e-90	302.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
TF_Zn_Ribbon	PF08271.12	gi|296242282|ref|YP_003649769.1|	-	0.28	10.7	4.5	0.6	9.7	4.5	1.6	1	0	0	1	1	1	0	TFIIB	zinc-binding
Rubredoxin_2	PF18073.1	gi|296242282|ref|YP_003649769.1|	-	4.5	7.1	5.9	1.7	8.5	1.0	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
BPD_transp_2	PF02653.16	gi|296242283|ref|YP_003649770.1|	-	3.3e-18	65.8	34.8	4.5e-18	65.4	34.8	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
MotA_ExbB	PF01618.16	gi|296242283|ref|YP_003649770.1|	-	1.1	9.0	5.9	8.6	6.1	2.7	2.7	2	0	0	2	2	2	0	MotA/TolQ/ExbB	proton	channel	family
BPD_transp_2	PF02653.16	gi|296242284|ref|YP_003649771.1|	-	1.5e-23	83.3	34.2	1.5e-23	83.3	34.2	2.0	1	1	1	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|296242285|ref|YP_003649772.1|	-	2.1e-39	135.2	0.2	1.1e-28	100.4	0.1	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|296242285|ref|YP_003649772.1|	-	0.00016	21.6	0.1	0.0011	18.9	0.1	2.2	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|296242285|ref|YP_003649772.1|	-	0.0014	18.4	0.5	0.0051	16.5	0.1	2.0	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
DLIC	PF05783.11	gi|296242285|ref|YP_003649772.1|	-	0.015	14.2	0.0	0.023	13.5	0.0	1.2	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA_15	PF13175.6	gi|296242285|ref|YP_003649772.1|	-	0.037	13.7	0.0	0.065	12.9	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|296242285|ref|YP_003649772.1|	-	0.037	14.5	0.1	0.063	13.8	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|296242285|ref|YP_003649772.1|	-	0.049	13.5	0.1	0.12	12.3	0.1	1.6	1	0	0	1	1	1	0	RsgA	GTPase
AAA_22	PF13401.6	gi|296242285|ref|YP_003649772.1|	-	0.059	13.7	0.0	0.22	11.8	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|296242285|ref|YP_003649772.1|	-	0.073	12.5	0.0	1.6	8.1	0.0	2.4	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|296242285|ref|YP_003649772.1|	-	0.077	13.4	0.0	0.22	11.9	0.0	1.7	1	0	0	1	1	1	0	AAA	ATPase	domain
Bmp	PF02608.14	gi|296242286|ref|YP_003649773.1|	-	1.1e-35	123.1	0.8	1.4e-35	122.8	0.8	1.1	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Peripla_BP_6	PF13458.6	gi|296242286|ref|YP_003649773.1|	-	7.5e-05	22.5	2.1	0.00051	19.8	0.2	2.2	1	1	1	2	2	2	1	Periplasmic	binding	protein
RAI16-like	PF10257.9	gi|296242286|ref|YP_003649773.1|	-	0.0072	15.2	0.0	0.01	14.7	0.0	1.1	1	0	0	1	1	1	1	Retinoic	acid	induced	16-like	protein
Glycos_transf_2	PF00535.26	gi|296242287|ref|YP_003649774.1|	-	1.8e-32	112.5	0.0	2.4e-32	112.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|296242287|ref|YP_003649774.1|	-	1.7e-13	51.0	0.0	2.2e-13	50.6	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|296242287|ref|YP_003649774.1|	-	0.00014	21.5	0.0	0.0002	21.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|296242287|ref|YP_003649774.1|	-	0.036	14.6	0.0	0.067	13.7	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|296242287|ref|YP_003649774.1|	-	0.055	12.9	0.0	0.086	12.3	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	21
tRNA-synt_1	PF00133.22	gi|296242288|ref|YP_003649775.1|	-	3.4e-176	587.0	0.5	4.5e-176	586.7	0.5	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|296242288|ref|YP_003649775.1|	-	2.4e-38	131.5	2.5	5.4e-38	130.3	2.5	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|296242288|ref|YP_003649775.1|	-	3.7e-21	75.3	0.4	2.3e-06	26.6	0.0	4.1	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|296242288|ref|YP_003649775.1|	-	0.00086	18.9	0.0	0.0021	17.6	0.0	1.6	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|296242288|ref|YP_003649775.1|	-	0.0085	15.5	0.0	0.081	12.3	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
dCMP_cyt_deam_1	PF00383.23	gi|296242289|ref|YP_003649776.1|	-	3.1e-16	59.1	0.0	3.7e-16	58.8	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.12	gi|296242289|ref|YP_003649776.1|	-	5.5e-12	46.0	0.1	7e-12	45.7	0.1	1.2	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
LmjF365940-deam	PF14421.6	gi|296242289|ref|YP_003649776.1|	-	3.5e-07	30.0	0.8	3.8e-05	23.4	0.1	2.0	1	1	1	2	2	2	2	A	distinct	subfamily	of	CDD/CDA-like	deaminases
DUF3277	PF11681.8	gi|296242289|ref|YP_003649776.1|	-	0.058	13.3	0.1	0.077	12.9	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3277)
Methyltransf_11	PF08241.12	gi|296242290|ref|YP_003649777.1|	-	2.5e-10	40.8	0.0	5.2e-10	39.9	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296242290|ref|YP_003649777.1|	-	6.1e-08	33.3	0.0	1.9e-07	31.7	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|296242290|ref|YP_003649777.1|	-	1e-05	25.4	0.0	4.6e-05	23.3	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|296242290|ref|YP_003649777.1|	-	3.4e-05	24.5	0.1	7.1e-05	23.5	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|296242290|ref|YP_003649777.1|	-	0.0024	17.7	0.0	0.01	15.7	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|296242290|ref|YP_003649777.1|	-	0.009	15.9	0.0	0.019	14.8	0.0	1.5	1	0	0	1	1	1	1	Hypothetical	methyltransferase
PALP	PF00291.25	gi|296242291|ref|YP_003649778.1|	-	2e-74	250.7	0.0	2.3e-74	250.4	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
PfkB	PF00294.24	gi|296242292|ref|YP_003649779.1|	-	1.9e-55	188.3	0.0	2.2e-55	188.1	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|296242292|ref|YP_003649779.1|	-	4.1e-07	29.6	0.0	5.8e-07	29.1	0.0	1.1	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
DeoC	PF01791.9	gi|296242293|ref|YP_003649780.1|	-	1.8e-35	122.7	0.0	2.2e-35	122.4	0.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
ThiG	PF05690.14	gi|296242293|ref|YP_003649780.1|	-	0.056	12.7	1.3	0.21	10.9	0.3	2.1	3	0	0	3	3	3	0	Thiazole	biosynthesis	protein	ThiG
Peptidase_C26	PF07722.13	gi|296242293|ref|YP_003649780.1|	-	0.11	12.2	0.1	0.74	9.5	0.0	2.0	2	0	0	2	2	2	0	Peptidase	C26
Sm_multidrug_ex	PF06695.11	gi|296242294|ref|YP_003649781.1|	-	1.1e-29	103.5	5.9	1.1e-29	103.5	5.9	1.5	2	0	0	2	2	2	1	Putative	small	multi-drug	export	protein
HD	PF01966.22	gi|296242295|ref|YP_003649782.1|	-	1.9e-07	31.3	0.9	4.5e-07	30.1	0.2	2.0	2	0	0	2	2	2	1	HD	domain
Peptidase_M32	PF02074.15	gi|296242295|ref|YP_003649782.1|	-	0.027	13.3	1.6	0.036	12.9	0.5	1.7	2	0	0	2	2	2	0	Carboxypeptidase	Taq	(M32)	metallopeptidase
Hemerythrin	PF01814.23	gi|296242296|ref|YP_003649783.1|	-	3.1e-05	24.6	12.5	0.00014	22.4	3.5	1.7	1	1	1	2	2	2	2	Hemerythrin	HHE	cation	binding	domain
AhpC-TSA	PF00578.21	gi|296242297|ref|YP_003649784.1|	-	3.8e-30	104.4	0.0	5e-30	104.0	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|296242297|ref|YP_003649784.1|	-	9.2e-14	51.4	0.0	1.3e-13	50.9	0.0	1.2	1	0	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.9	gi|296242297|ref|YP_003649784.1|	-	1e-06	28.5	0.1	3e-06	27.0	0.1	1.8	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
Thymidylat_synt	PF00303.19	gi|296242297|ref|YP_003649784.1|	-	0.13	11.3	0.0	0.17	11.0	0.0	1.1	1	0	0	1	1	1	0	Thymidylate	synthase
Lactamase_B	PF00753.27	gi|296242298|ref|YP_003649785.1|	-	3.2e-07	30.6	0.1	5.7e-07	29.7	0.1	1.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
FMN_red	PF03358.15	gi|296242298|ref|YP_003649785.1|	-	0.0021	17.8	0.0	0.0044	16.8	0.0	1.4	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Peripla_BP_6	PF13458.6	gi|296242298|ref|YP_003649785.1|	-	0.0026	17.5	0.0	0.0055	16.4	0.1	1.4	1	1	0	1	1	1	1	Periplasmic	binding	protein
Lactamase_B_2	PF12706.7	gi|296242298|ref|YP_003649785.1|	-	0.024	14.2	0.0	0.038	13.5	0.0	1.3	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
dTDP_sugar_isom	PF00908.17	gi|296242299|ref|YP_003649786.1|	-	2.9e-64	215.8	0.0	3.2e-64	215.6	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
Cupin_1	PF00190.22	gi|296242299|ref|YP_003649786.1|	-	0.0005	19.7	0.0	0.00065	19.3	0.0	1.2	1	0	0	1	1	1	1	Cupin
Cupin_2	PF07883.11	gi|296242299|ref|YP_003649786.1|	-	0.033	13.9	0.0	0.07	12.9	0.0	1.5	1	1	0	1	1	1	0	Cupin	domain
RmlD_sub_bind	PF04321.17	gi|296242300|ref|YP_003649787.1|	-	5.5e-72	242.3	0.0	6.1e-72	242.1	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|296242300|ref|YP_003649787.1|	-	7.7e-23	81.2	0.0	1.3e-22	80.5	0.0	1.3	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|296242300|ref|YP_003649787.1|	-	7.1e-15	55.2	0.1	2.8e-14	53.3	0.2	1.9	2	1	0	2	2	2	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|296242300|ref|YP_003649787.1|	-	2.1e-11	43.5	0.1	3.8e-10	39.4	0.1	2.5	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|296242300|ref|YP_003649787.1|	-	1.1e-09	37.9	0.4	3.7e-08	32.9	0.0	2.6	2	1	0	2	2	2	1	Male	sterility	protein
3Beta_HSD	PF01073.19	gi|296242300|ref|YP_003649787.1|	-	1.1e-06	27.9	0.1	2.2e-06	26.9	0.1	1.5	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
adh_short	PF00106.25	gi|296242300|ref|YP_003649787.1|	-	0.01	15.3	0.0	0.018	14.5	0.0	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
DFP	PF04127.15	gi|296242300|ref|YP_003649787.1|	-	0.013	15.4	0.0	0.022	14.6	0.0	1.3	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
NmrA	PF05368.13	gi|296242300|ref|YP_003649787.1|	-	0.099	12.2	0.0	0.48	9.9	0.0	2.0	2	1	0	2	2	2	0	NmrA-like	family
B12-binding	PF02310.19	gi|296242300|ref|YP_003649787.1|	-	0.12	12.4	0.0	1.4	9.0	0.0	2.3	2	0	0	2	2	2	0	B12	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|296242301|ref|YP_003649788.1|	-	5.7e-76	256.0	0.0	1.1e-75	255.1	0.0	1.4	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|296242301|ref|YP_003649788.1|	-	1e-66	224.9	0.0	1.3e-66	224.5	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|296242301|ref|YP_003649788.1|	-	1.4e-22	80.0	0.0	1.9e-22	79.6	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|296242301|ref|YP_003649788.1|	-	3.8e-17	62.3	0.0	4.7e-17	62.0	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|296242301|ref|YP_003649788.1|	-	1.3e-15	57.3	0.0	1.9e-14	53.5	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|296242301|ref|YP_003649788.1|	-	1.9e-14	53.5	0.0	3.6e-14	52.5	0.0	1.5	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|296242301|ref|YP_003649788.1|	-	1.8e-07	31.2	0.0	2.9e-07	30.6	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|296242301|ref|YP_003649788.1|	-	0.00037	20.1	0.0	0.00057	19.5	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
Sacchrp_dh_NADP	PF03435.18	gi|296242301|ref|YP_003649788.1|	-	0.0018	18.5	0.0	0.0028	17.9	0.0	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
adh_short	PF00106.25	gi|296242301|ref|YP_003649788.1|	-	0.017	14.6	0.0	0.19	11.2	0.0	2.1	1	1	0	1	1	1	0	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|296242301|ref|YP_003649788.1|	-	0.098	12.9	0.1	0.23	11.7	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Semialdhyde_dh	PF01118.24	gi|296242301|ref|YP_003649788.1|	-	0.099	13.1	0.0	0.16	12.4	0.0	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NTP_transferase	PF00483.23	gi|296242302|ref|YP_003649789.1|	-	5e-45	154.0	0.0	6.3e-45	153.7	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|296242302|ref|YP_003649789.1|	-	8.9e-12	45.7	0.0	1.4e-11	45.0	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|296242302|ref|YP_003649789.1|	-	0.0052	16.6	0.0	0.0084	15.9	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep	PF00132.24	gi|296242302|ref|YP_003649789.1|	-	0.011	15.5	0.3	0.18	11.6	0.0	2.9	2	1	0	2	2	2	0	Bacterial	transferase	hexapeptide	(six	repeats)
CTP_transf_3	PF02348.19	gi|296242302|ref|YP_003649789.1|	-	0.022	14.7	0.0	0.045	13.7	0.0	1.4	1	0	0	1	1	1	0	Cytidylyltransferase
GSH_synth_ATP	PF03917.17	gi|296242302|ref|YP_003649789.1|	-	0.041	12.7	0.0	0.057	12.2	0.0	1.2	1	0	0	1	1	1	0	Eukaryotic	glutathione	synthase,	ATP	binding	domain
Glycos_transf_2	PF00535.26	gi|296242303|ref|YP_003649790.1|	-	9e-16	58.2	0.0	1.7e-15	57.3	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|296242303|ref|YP_003649790.1|	-	1.2e-10	41.7	0.0	2.1e-09	37.6	0.0	2.1	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|296242303|ref|YP_003649790.1|	-	0.062	13.8	0.0	0.14	12.7	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
NTP_transf_5	PF14907.6	gi|296242306|ref|YP_003649793.1|	-	3.9e-08	33.2	0.2	7.4e-08	32.3	0.2	1.5	1	1	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
NurA	PF09376.10	gi|296242306|ref|YP_003649793.1|	-	0.14	11.9	0.1	0.25	11.0	0.0	1.4	1	1	0	1	1	1	0	NurA	domain
Glycos_transf_2	PF00535.26	gi|296242309|ref|YP_003649796.1|	-	3.6e-27	95.2	0.1	5.3e-27	94.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|296242309|ref|YP_003649796.1|	-	2.6e-15	57.0	0.0	3.7e-15	56.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|296242309|ref|YP_003649796.1|	-	6.2e-08	32.4	0.1	0.0005	19.6	0.0	2.2	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|296242309|ref|YP_003649796.1|	-	7.9e-07	29.2	0.2	1.5e-06	28.3	0.2	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_7C	PF02709.14	gi|296242309|ref|YP_003649796.1|	-	8.7e-05	22.1	0.4	0.00018	21.1	0.4	1.5	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_tranf_2_4	PF13704.6	gi|296242309|ref|YP_003649796.1|	-	0.0042	17.6	0.0	0.008	16.7	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|296242309|ref|YP_003649796.1|	-	0.015	14.7	0.0	0.031	13.8	0.0	1.6	1	1	0	1	1	1	0	Glycosyl	transferase	family	21
GlcNAc	PF11397.8	gi|296242309|ref|YP_003649796.1|	-	0.061	12.8	0.1	0.093	12.2	0.1	1.3	1	0	0	1	1	1	0	Glycosyltransferase	(GlcNAc)
Cytidylate_kin	PF02224.18	gi|296242310|ref|YP_003649797.1|	-	0.001	18.8	0.0	0.0019	18.0	0.0	1.5	2	0	0	2	2	2	1	Cytidylate	kinase
AAA_18	PF13238.6	gi|296242310|ref|YP_003649797.1|	-	0.0031	18.1	0.0	0.005	17.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
dNK	PF01712.19	gi|296242310|ref|YP_003649797.1|	-	0.052	13.4	0.0	0.13	12.1	0.0	1.6	2	0	0	2	2	2	0	Deoxynucleoside	kinase
Hydin_ADK	PF17213.3	gi|296242310|ref|YP_003649797.1|	-	0.064	13.5	0.0	0.091	13.0	0.0	1.2	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
Rad17	PF03215.15	gi|296242310|ref|YP_003649797.1|	-	0.15	12.0	0.0	1.4	8.8	0.0	2.1	2	0	0	2	2	2	0	Rad17	P-loop	domain
Fe_dep_repr_C	PF02742.15	gi|296242312|ref|YP_003649799.1|	-	0.05	13.7	0.3	0.1	12.7	0.3	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Glycos_transf_2	PF00535.26	gi|296242313|ref|YP_003649800.1|	-	4e-23	82.1	0.0	5.1e-23	81.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|296242313|ref|YP_003649800.1|	-	8.9e-13	48.6	0.0	1.2e-12	48.2	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|296242313|ref|YP_003649800.1|	-	7e-08	32.3	0.1	1.1e-07	31.6	0.1	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|296242313|ref|YP_003649800.1|	-	5.6e-06	26.4	0.0	8.3e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|296242313|ref|YP_003649800.1|	-	0.0032	17.0	0.0	0.0052	16.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|296242313|ref|YP_003649800.1|	-	0.0033	17.9	0.0	0.0058	17.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_5	PF13712.6	gi|296242313|ref|YP_003649800.1|	-	0.023	14.4	0.1	0.031	13.9	0.1	1.4	1	1	0	1	1	1	0	Glycosyltransferase	like	family
Polysacc_deac_1	PF01522.21	gi|296242314|ref|YP_003649801.1|	-	1.6e-22	79.7	0.0	2.6e-22	79.0	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|296242314|ref|YP_003649801.1|	-	0.0011	18.7	0.1	0.0013	18.4	0.1	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
DUF2194	PF09960.9	gi|296242314|ref|YP_003649801.1|	-	0.012	14.0	0.1	0.015	13.7	0.1	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	conserved	in	bacteria	(DUF2194)
Glycos_transf_2	PF00535.26	gi|296242315|ref|YP_003649802.1|	-	4.7e-27	94.9	0.0	6.5e-27	94.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|296242315|ref|YP_003649802.1|	-	7e-17	62.1	0.0	3.6e-15	56.5	0.0	2.1	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|296242315|ref|YP_003649802.1|	-	1.7e-08	34.6	0.0	8.6e-08	32.3	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Anp1	PF03452.14	gi|296242315|ref|YP_003649802.1|	-	3.1e-08	33.4	0.2	6.8e-05	22.4	0.4	2.3	1	1	1	2	2	2	2	Anp1
Glyco_tranf_2_2	PF10111.9	gi|296242315|ref|YP_003649802.1|	-	5.4e-08	32.6	0.0	2.9e-06	26.9	0.0	2.2	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|296242315|ref|YP_003649802.1|	-	4.3e-05	24.0	0.0	7.4e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|296242315|ref|YP_003649802.1|	-	0.0017	17.9	0.0	0.005	16.3	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_5	PF13712.6	gi|296242315|ref|YP_003649802.1|	-	0.0022	17.7	0.0	0.0047	16.6	0.0	1.6	2	0	0	2	2	2	1	Glycosyltransferase	like	family
T_Ag_DNA_bind	PF02217.16	gi|296242315|ref|YP_003649802.1|	-	0.16	12.6	1.1	0.33	11.6	0.4	2.0	2	0	0	2	2	2	0	Origin	of	replication	binding	protein
ATP12	PF07542.11	gi|296242315|ref|YP_003649802.1|	-	0.19	11.8	0.0	0.44	10.6	0.0	1.6	1	0	0	1	1	1	0	ATP12	chaperone	protein
TIC20	PF16166.5	gi|296242315|ref|YP_003649802.1|	-	1	9.1	8.3	1.7	8.4	8.3	1.3	1	0	0	1	1	1	0	Chloroplast	import	apparatus	Tic20-like
Glycos_transf_2	PF00535.26	gi|296242316|ref|YP_003649803.1|	-	1.4e-21	77.0	0.1	2.2e-21	76.4	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|296242316|ref|YP_003649803.1|	-	4.9e-13	49.2	0.3	6.5e-13	48.8	0.3	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|296242316|ref|YP_003649803.1|	-	1.3e-12	48.1	0.7	6.3e-12	45.8	0.7	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|296242316|ref|YP_003649803.1|	-	9.7e-08	32.2	0.0	1.5e-07	31.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|296242316|ref|YP_003649803.1|	-	7.3e-06	26.4	0.0	1.7e-05	25.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|296242316|ref|YP_003649803.1|	-	0.0012	18.3	0.0	0.024	14.1	0.0	2.3	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
DUF2652	PF10851.8	gi|296242316|ref|YP_003649803.1|	-	0.06	13.5	0.3	0.75	9.9	0.0	2.5	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2652)
PMT_2	PF13231.6	gi|296242317|ref|YP_003649804.1|	-	0.00016	22.0	21.4	0.00016	22.0	21.4	4.5	3	2	1	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
EpsG	PF14897.6	gi|296242317|ref|YP_003649804.1|	-	0.065	12.5	53.9	0.61	9.3	12.7	2.3	2	0	0	2	2	2	0	EpsG	family
TraS	PF10624.9	gi|296242317|ref|YP_003649804.1|	-	0.88	9.5	4.2	2.4	8.1	4.2	1.8	1	0	0	1	1	1	0	Plasmid	conjugative	transfer	entry	exclusion	protein	TraS
Glycos_transf_1	PF00534.20	gi|296242318|ref|YP_003649805.1|	-	1.2e-28	99.8	0.3	2.2e-28	98.9	0.3	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|296242318|ref|YP_003649805.1|	-	1.1e-19	71.2	0.1	2.7e-19	69.9	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|296242318|ref|YP_003649805.1|	-	3.4e-15	56.4	0.3	1.6e-14	54.3	0.2	2.1	3	0	0	3	3	3	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|296242318|ref|YP_003649805.1|	-	8.6e-08	32.8	0.1	2.6e-07	31.2	0.1	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|296242318|ref|YP_003649805.1|	-	0.0036	17.0	0.0	0.021	14.5	0.1	2.0	2	0	0	2	2	2	1	Starch	synthase	catalytic	domain
Glyco_trans_4_2	PF13477.6	gi|296242318|ref|YP_003649805.1|	-	0.076	13.0	0.1	0.3	11.1	0.1	2.1	1	1	0	1	1	1	0	Glycosyl	transferase	4-like
sCache_3_3	PF17202.4	gi|296242318|ref|YP_003649805.1|	-	0.087	13.3	0.2	0.21	12.0	0.2	1.6	1	0	0	1	1	1	0	Single	cache	domain	3
Glycos_transf_2	PF00535.26	gi|296242319|ref|YP_003649806.1|	-	2.4e-26	92.5	0.0	3.4e-26	92.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|296242319|ref|YP_003649806.1|	-	6.4e-22	78.6	0.2	2e-21	77.0	0.2	1.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|296242319|ref|YP_003649806.1|	-	4.6e-11	42.5	0.1	2e-10	40.4	0.0	2.0	1	1	2	3	3	3	1	Glycosyl	transferase	family	21
Glyco_trans_2_3	PF13632.6	gi|296242319|ref|YP_003649806.1|	-	1.5e-08	34.8	0.7	2.2e-08	34.3	0.7	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_2	PF10111.9	gi|296242319|ref|YP_003649806.1|	-	7e-08	32.3	0.0	1.4e-07	31.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|296242319|ref|YP_003649806.1|	-	0.045	14.3	0.1	0.082	13.4	0.1	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Anp1	PF03452.14	gi|296242319|ref|YP_003649806.1|	-	0.059	12.8	0.0	0.083	12.3	0.0	1.2	1	0	0	1	1	1	0	Anp1
Tautomerase	PF01361.21	gi|296242320|ref|YP_003649807.1|	-	2.9e-13	49.5	0.2	3.3e-13	49.3	0.2	1.1	1	0	0	1	1	1	1	Tautomerase	enzyme
Tautomerase_2	PF14552.6	gi|296242320|ref|YP_003649807.1|	-	1.6e-08	34.5	0.0	1.8e-08	34.3	0.0	1.1	1	0	0	1	1	1	1	Tautomerase	enzyme
Tautomerase_3	PF14832.6	gi|296242320|ref|YP_003649807.1|	-	4.2e-06	27.0	0.0	4.8e-06	26.8	0.0	1.0	1	0	0	1	1	1	1	Putative	oxalocrotonate	tautomerase	enzyme
Glycos_transf_2	PF00535.26	gi|296242325|ref|YP_003649812.1|	-	3e-23	82.5	0.0	4.4e-23	81.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|296242325|ref|YP_003649812.1|	-	2.7e-05	24.2	0.0	4e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|296242325|ref|YP_003649812.1|	-	0.0022	17.5	0.0	0.0038	16.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|296242325|ref|YP_003649812.1|	-	0.017	14.6	0.0	0.022	14.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|296242325|ref|YP_003649812.1|	-	0.079	13.5	0.0	0.14	12.7	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
HTH_AsnC-type	PF13404.6	gi|296242326|ref|YP_003649813.1|	-	2e-13	49.9	0.8	3.6e-13	49.1	0.8	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|296242326|ref|YP_003649813.1|	-	3.3e-12	45.8	0.5	8.4e-12	44.5	0.5	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|296242326|ref|YP_003649813.1|	-	8.3e-09	35.3	0.0	1.6e-08	34.4	0.0	1.5	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HxlR	PF01638.17	gi|296242326|ref|YP_003649813.1|	-	1.3e-05	25.0	0.1	2.4e-05	24.1	0.0	1.5	2	0	0	2	2	2	1	HxlR-like	helix-turn-helix
HTH_11	PF08279.12	gi|296242326|ref|YP_003649813.1|	-	5.9e-05	22.9	0.2	0.00016	21.6	0.2	1.7	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|296242326|ref|YP_003649813.1|	-	0.00015	21.6	0.2	0.0005	19.9	0.1	1.8	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|296242326|ref|YP_003649813.1|	-	0.0002	21.2	0.0	0.00051	19.9	0.0	1.7	1	0	0	1	1	1	1	MarR	family
NapD	PF03927.13	gi|296242326|ref|YP_003649813.1|	-	0.00025	21.0	0.0	0.00046	20.2	0.0	1.4	1	0	0	1	1	1	1	NapD	protein
HTH_27	PF13463.6	gi|296242326|ref|YP_003649813.1|	-	0.0033	17.9	0.3	0.027	15.0	0.1	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|296242326|ref|YP_003649813.1|	-	0.0036	17.4	0.3	0.017	15.3	0.1	1.9	1	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|296242326|ref|YP_003649813.1|	-	0.0084	16.0	0.0	0.014	15.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_CodY	PF08222.11	gi|296242326|ref|YP_003649813.1|	-	0.018	14.6	0.1	0.031	13.8	0.1	1.4	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
Rrf2	PF02082.20	gi|296242326|ref|YP_003649813.1|	-	0.034	14.5	0.1	0.86	10.0	0.1	2.3	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_20	PF12840.7	gi|296242326|ref|YP_003649813.1|	-	0.059	13.4	0.0	0.098	12.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|296242326|ref|YP_003649813.1|	-	0.07	13.1	0.0	0.24	11.4	0.0	1.8	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
AsnC_trans_reg2	PF17805.1	gi|296242326|ref|YP_003649813.1|	-	0.15	12.3	0.0	2.8	8.1	0.0	2.1	2	0	0	2	2	2	0	AsnC-like	ligand	binding	domain
DUF2330	PF10092.9	gi|296242327|ref|YP_003649814.1|	-	0.12	11.4	0.0	0.15	11.1	0.0	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2330)
Desulfoferrodox	PF01880.18	gi|296242328|ref|YP_003649815.1|	-	1.1e-30	106.1	0.0	1.3e-30	105.8	0.0	1.0	1	0	0	1	1	1	1	Desulfoferrodoxin
SoxY	PF13501.6	gi|296242328|ref|YP_003649815.1|	-	5.5e-11	42.7	0.0	7e-11	42.3	0.0	1.1	1	0	0	1	1	1	1	Sulfur	oxidation	protein	SoxY
Thioredoxin	PF00085.20	gi|296242329|ref|YP_003649816.1|	-	0.044	13.8	0.1	0.1	12.6	0.1	1.6	1	1	0	1	1	1	0	Thioredoxin
GCHY-1	PF02649.14	gi|296242330|ref|YP_003649817.1|	-	4.8e-36	124.6	0.0	6e-36	124.3	0.0	1.1	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
MAF_flag10	PF01973.18	gi|296242331|ref|YP_003649818.1|	-	9.9e-25	87.2	0.0	1.3e-24	86.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
DHNA	PF04038.12	gi|296242332|ref|YP_003649819.1|	-	3.7e-36	123.9	0.1	4.3e-36	123.7	0.1	1.0	1	0	0	1	1	1	1	Dihydroneopterin	aldolase
Flavoprotein	PF02441.19	gi|296242333|ref|YP_003649820.1|	-	1.7e-13	50.7	0.0	2.6e-13	50.0	0.0	1.3	1	0	0	1	1	1	1	Flavoprotein
Fer4_16	PF13484.6	gi|296242333|ref|YP_003649820.1|	-	1.6e-05	25.8	7.5	0.015	16.2	0.3	2.3	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|296242333|ref|YP_003649820.1|	-	0.00012	22.2	8.5	0.00021	21.4	8.5	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|296242333|ref|YP_003649820.1|	-	0.00022	21.2	10.9	0.072	13.2	3.1	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|296242333|ref|YP_003649820.1|	-	0.0003	21.3	10.4	0.0057	17.2	12.1	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|296242333|ref|YP_003649820.1|	-	0.0027	17.8	13.6	0.0065	16.6	13.7	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|296242333|ref|YP_003649820.1|	-	0.0047	17.3	4.3	0.16	12.4	0.1	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_11	PF13247.6	gi|296242333|ref|YP_003649820.1|	-	0.014	15.5	4.1	0.022	14.9	4.1	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296242333|ref|YP_003649820.1|	-	0.029	14.5	13.7	0.16	12.1	2.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|296242333|ref|YP_003649820.1|	-	0.092	12.6	11.2	0.098	12.5	0.6	3.2	2	1	0	2	2	2	0	4Fe-4S	binding	domain
MOZART1	PF12554.8	gi|296242333|ref|YP_003649820.1|	-	0.11	12.3	0.2	0.31	10.9	0.2	1.8	1	0	0	1	1	1	0	Mitotic-spindle	organizing	gamma-tubulin	ring	associated
Fer4_4	PF12800.7	gi|296242333|ref|YP_003649820.1|	-	0.11	13.0	16.8	0.39	11.3	4.5	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|296242333|ref|YP_003649820.1|	-	0.35	11.0	11.4	0.83	9.8	2.1	1.8	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|296242333|ref|YP_003649820.1|	-	7.9	7.1	15.8	89	3.7	4.2	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
DUF4346	PF14251.6	gi|296242334|ref|YP_003649821.1|	-	1.2e-11	44.6	0.4	0.0002	21.3	0.1	2.9	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4346)
Pterin_bind	PF00809.22	gi|296242334|ref|YP_003649821.1|	-	0.0032	17.2	0.0	0.82	9.3	0.0	2.3	2	0	0	2	2	2	2	Pterin	binding	enzyme
ATPase	PF06745.13	gi|296242335|ref|YP_003649822.1|	-	6.2e-25	87.9	0.1	7.8e-25	87.6	0.1	1.0	1	0	0	1	1	1	1	KaiC
DnaB_C	PF03796.15	gi|296242335|ref|YP_003649822.1|	-	2.6e-07	30.3	0.0	4.4e-07	29.5	0.0	1.4	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|296242335|ref|YP_003649822.1|	-	5.5e-07	29.4	0.0	9.6e-07	28.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
DUF835	PF05763.12	gi|296242335|ref|YP_003649822.1|	-	0.0004	20.1	0.2	0.0015	18.3	0.2	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
AAA_14	PF13173.6	gi|296242335|ref|YP_003649822.1|	-	0.00057	19.9	0.0	0.00099	19.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|296242335|ref|YP_003649822.1|	-	0.0011	18.9	0.1	0.0095	15.9	0.0	2.2	2	0	0	2	2	2	1	NACHT	domain
AAA_16	PF13191.6	gi|296242335|ref|YP_003649822.1|	-	0.0011	19.4	0.0	0.0018	18.7	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
Elong_Iki1	PF10483.9	gi|296242335|ref|YP_003649822.1|	-	0.0013	18.3	0.0	0.0017	17.9	0.0	1.2	1	0	0	1	1	1	1	Elongator	subunit	Iki1
CbiA	PF01656.23	gi|296242335|ref|YP_003649822.1|	-	0.002	18.2	0.0	0.0029	17.7	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
T2SSE	PF00437.20	gi|296242335|ref|YP_003649822.1|	-	0.0029	16.7	0.1	0.039	13.0	0.0	2.0	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
Zeta_toxin	PF06414.12	gi|296242335|ref|YP_003649822.1|	-	0.0037	16.6	0.0	0.006	15.9	0.0	1.2	1	0	0	1	1	1	1	Zeta	toxin
MEDS	PF14417.6	gi|296242335|ref|YP_003649822.1|	-	0.0045	16.9	0.0	0.42	10.4	0.0	2.4	1	1	2	3	3	3	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
ABC_tran	PF00005.27	gi|296242335|ref|YP_003649822.1|	-	0.0052	17.3	0.0	0.0086	16.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
PAXNEB	PF05625.11	gi|296242335|ref|YP_003649822.1|	-	0.006	15.8	0.1	0.012	14.8	0.1	1.4	2	0	0	2	2	2	1	PAXNEB	protein
NTPase_P4	PF11602.8	gi|296242335|ref|YP_003649822.1|	-	0.012	14.8	0.1	0.016	14.4	0.1	1.2	1	0	0	1	1	1	0	ATPase	P4	of	dsRNA	bacteriophage	phi-12
AAA_5	PF07728.14	gi|296242335|ref|YP_003649822.1|	-	0.024	14.6	0.0	0.063	13.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|296242335|ref|YP_003649822.1|	-	0.027	14.8	0.0	0.051	13.8	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|296242335|ref|YP_003649822.1|	-	0.031	13.9	0.0	0.05	13.2	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_29	PF13555.6	gi|296242335|ref|YP_003649822.1|	-	0.038	13.7	0.2	0.14	11.9	0.1	2.0	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|296242335|ref|YP_003649822.1|	-	0.049	13.4	0.0	0.068	12.9	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|296242335|ref|YP_003649822.1|	-	0.087	12.6	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
NB-ARC	PF00931.22	gi|296242335|ref|YP_003649822.1|	-	0.092	11.9	0.0	0.15	11.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Sigma54_activat	PF00158.26	gi|296242335|ref|YP_003649822.1|	-	0.11	12.2	0.0	0.2	11.3	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
DUF2075	PF09848.9	gi|296242335|ref|YP_003649822.1|	-	0.16	11.2	0.0	0.21	10.8	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.18	gi|296242335|ref|YP_003649822.1|	-	0.18	11.5	0.0	0.26	11.0	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
CoA_transf_3	PF02515.17	gi|296242336|ref|YP_003649823.1|	-	1e-116	390.1	0.0	1.1e-116	389.9	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
G_glu_transpept	PF01019.21	gi|296242337|ref|YP_003649824.1|	-	6.5e-80	269.3	0.0	9.6e-80	268.8	0.0	1.3	1	1	0	1	1	1	1	Gamma-glutamyltranspeptidase
GHMP_kinases_C	PF08544.13	gi|296242338|ref|YP_003649825.1|	-	1.6e-05	25.2	0.0	3.4e-05	24.1	0.0	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
GHMP_kinases_N	PF00288.26	gi|296242338|ref|YP_003649825.1|	-	2.6e-05	24.4	0.1	8.9e-05	22.6	0.0	1.9	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
AAA_15	PF13175.6	gi|296242338|ref|YP_003649825.1|	-	0.15	11.8	0.0	0.16	11.6	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
DUF447	PF04289.12	gi|296242339|ref|YP_003649826.1|	-	8.2e-15	55.0	0.0	9.3e-15	54.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
DUF1464	PF07318.12	gi|296242340|ref|YP_003649827.1|	-	3.2e-80	269.7	2.6	3.7e-80	269.5	2.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1464)
DUF1805	PF08827.11	gi|296242340|ref|YP_003649827.1|	-	0.063	13.6	0.2	0.63	10.4	0.0	2.8	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1805)
SrfB	PF07520.11	gi|296242340|ref|YP_003649827.1|	-	0.074	10.9	0.0	0.1	10.5	0.0	1.1	1	0	0	1	1	1	0	Virulence	factor	SrfB
MatE	PF01554.18	gi|296242341|ref|YP_003649828.1|	-	4.2e-45	153.3	39.8	3.1e-26	91.9	7.4	3.1	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|296242341|ref|YP_003649828.1|	-	1.6e-13	51.0	41.1	2.8e-11	43.7	13.7	5.2	3	1	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
HAD_2	PF13419.6	gi|296242342|ref|YP_003649829.1|	-	1.9e-15	57.4	0.0	3.5e-15	56.5	0.0	1.5	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|296242342|ref|YP_003649829.1|	-	1.5e-08	35.2	0.0	2.8e-08	34.3	0.0	1.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|296242342|ref|YP_003649829.1|	-	6.9e-07	29.2	0.0	1.1e-06	28.6	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
MoCF_biosynth	PF00994.24	gi|296242343|ref|YP_003649830.1|	-	4.2e-26	91.3	0.0	5e-26	91.1	0.0	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
Trehalase	PF01204.18	gi|296242343|ref|YP_003649830.1|	-	0.2	10.5	0.0	0.29	9.9	0.0	1.1	1	0	0	1	1	1	0	Trehalase
DNA_binding_1	PF01035.20	gi|296242344|ref|YP_003649831.1|	-	5.7e-21	74.4	0.0	6.8e-21	74.2	0.0	1.1	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
HTH_3	PF01381.22	gi|296242345|ref|YP_003649832.1|	-	0.087	12.9	0.1	0.16	12.0	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix
DUF1987	PF09345.10	gi|296242346|ref|YP_003649833.1|	-	0.049	13.3	0.0	4.2	7.1	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1987)
CAP_N	PF01213.19	gi|296242346|ref|YP_003649833.1|	-	0.27	10.7	5.0	0.49	9.8	5.0	1.4	1	0	0	1	1	1	0	Adenylate	cyclase	associated	(CAP)	N	terminal
MoCF_biosynth	PF00994.24	gi|296242347|ref|YP_003649834.1|	-	1.1e-18	67.3	0.1	1.6e-18	66.7	0.1	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
SBP_bac_11	PF13531.6	gi|296242348|ref|YP_003649835.1|	-	1.1e-26	94.1	0.0	1.3e-26	93.8	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|296242348|ref|YP_003649835.1|	-	9.7e-05	22.5	0.0	0.00048	20.2	0.0	1.9	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|296242349|ref|YP_003649836.1|	-	4e-15	56.0	12.0	4e-15	56.0	12.0	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|296242350|ref|YP_003649837.1|	-	1.9e-27	96.5	0.0	2.9e-27	95.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242350|ref|YP_003649837.1|	-	7e-14	52.3	0.7	6.8e-06	26.1	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|296242350|ref|YP_003649837.1|	-	0.00026	20.7	0.1	0.00052	19.7	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|296242350|ref|YP_003649837.1|	-	0.0039	17.7	0.1	0.0074	16.8	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|296242350|ref|YP_003649837.1|	-	0.014	15.2	0.0	0.022	14.5	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|296242350|ref|YP_003649837.1|	-	0.08	13.4	0.2	0.23	11.9	0.2	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_ATPase	PF09818.9	gi|296242350|ref|YP_003649837.1|	-	0.087	11.6	0.1	0.24	10.2	0.0	1.7	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
MMR_HSR1	PF01926.23	gi|296242350|ref|YP_003649837.1|	-	0.12	12.5	0.0	0.45	10.6	0.0	1.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.6	gi|296242350|ref|YP_003649837.1|	-	0.13	11.8	0.0	0.25	10.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|296242350|ref|YP_003649837.1|	-	0.14	11.8	0.0	0.26	10.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Radical_SAM	PF04055.21	gi|296242351|ref|YP_003649838.1|	-	4.2e-23	82.6	0.1	7.7e-23	81.7	0.1	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.13	gi|296242351|ref|YP_003649838.1|	-	1.4e-17	63.9	0.0	2.2e-17	63.2	0.0	1.3	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_12	PF13353.6	gi|296242351|ref|YP_003649838.1|	-	1.1e-05	25.7	0.0	2.2e-05	24.7	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|296242351|ref|YP_003649838.1|	-	4.1e-05	23.7	0.0	0.00013	22.1	0.0	1.8	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
MoaC	PF01967.21	gi|296242352|ref|YP_003649839.1|	-	1.1e-46	158.3	1.9	1.2e-46	158.2	1.9	1.0	1	0	0	1	1	1	1	MoaC	family
ThiS	PF02597.20	gi|296242353|ref|YP_003649840.1|	-	3.3e-07	30.9	0.0	4.3e-07	30.5	0.0	1.2	1	0	0	1	1	1	1	ThiS	family
Ub-Mut7C	PF14451.6	gi|296242353|ref|YP_003649840.1|	-	0.0013	18.5	0.0	0.0022	17.8	0.0	1.5	1	1	0	1	1	1	1	Mut7-C	ubiquitin
TGS	PF02824.21	gi|296242353|ref|YP_003649840.1|	-	0.02	14.9	0.2	0.034	14.2	0.2	1.6	1	1	0	1	1	1	0	TGS	domain
MoaE	PF02391.17	gi|296242354|ref|YP_003649841.1|	-	2e-26	92.5	0.0	2.5e-26	92.1	0.0	1.1	1	0	0	1	1	1	1	MoaE	protein
SASP	PF00269.20	gi|296242354|ref|YP_003649841.1|	-	0.064	13.3	0.3	4	7.5	0.0	2.3	2	0	0	2	2	2	0	Small,	acid-soluble	spore	proteins,	alpha/beta	type
DAO	PF01266.24	gi|296242355|ref|YP_003649842.1|	-	6.3e-55	187.2	0.0	7.2e-55	187.0	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|296242355|ref|YP_003649842.1|	-	3.7e-10	39.5	1.4	1.9e-09	37.1	1.4	1.9	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|296242355|ref|YP_003649842.1|	-	6e-08	32.3	1.8	0.00027	20.2	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|296242355|ref|YP_003649842.1|	-	9e-05	21.9	0.2	0.093	12.0	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|296242355|ref|YP_003649842.1|	-	9.7e-05	21.2	1.5	0.021	13.6	0.1	2.1	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|296242355|ref|YP_003649842.1|	-	0.00054	19.3	0.2	0.00091	18.6	0.2	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Shikimate_DH	PF01488.20	gi|296242355|ref|YP_003649842.1|	-	0.0006	19.9	1.9	0.0085	16.2	0.2	2.3	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
Pyr_redox	PF00070.27	gi|296242355|ref|YP_003649842.1|	-	0.0042	17.6	2.4	2.5	8.7	0.1	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|296242355|ref|YP_003649842.1|	-	0.0042	16.4	1.7	0.28	10.4	0.2	2.2	2	0	0	2	2	2	2	Thi4	family
NAD_binding_9	PF13454.6	gi|296242355|ref|YP_003649842.1|	-	0.0089	16.0	1.6	0.084	12.9	0.2	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|296242355|ref|YP_003649842.1|	-	0.019	14.1	2.1	0.93	8.5	0.1	2.2	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|296242355|ref|YP_003649842.1|	-	0.033	14.4	0.1	0.081	13.2	0.1	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|296242355|ref|YP_003649842.1|	-	0.44	9.8	4.4	3.8	6.7	4.4	2.0	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
Fer2_BFD	PF04324.15	gi|296242356|ref|YP_003649843.1|	-	9.2e-14	51.5	0.5	1.3e-13	51.0	0.5	1.3	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
SO_alpha_A3	PF17806.1	gi|296242356|ref|YP_003649843.1|	-	4.1e-13	49.5	0.0	4.8e-13	49.2	0.0	1.0	1	0	0	1	1	1	1	Sarcosine	oxidase	A3	domain
Fer4	PF00037.27	gi|296242357|ref|YP_003649844.1|	-	6.5e-11	41.6	12.3	4.9e-07	29.3	3.3	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|296242357|ref|YP_003649844.1|	-	2.1e-08	34.6	7.2	5.1e-08	33.4	7.2	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|296242357|ref|YP_003649844.1|	-	1.9e-07	31.1	8.5	3.3e-07	30.4	8.5	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|296242357|ref|YP_003649844.1|	-	7.8e-07	28.9	14.4	0.00023	21.1	2.2	2.9	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|296242357|ref|YP_003649844.1|	-	3.7e-06	27.0	21.8	0.00079	19.5	12.5	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296242357|ref|YP_003649844.1|	-	7.3e-06	26.0	10.7	1.5e-05	25.0	10.7	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|296242357|ref|YP_003649844.1|	-	2.7e-05	25.0	9.2	0.0097	16.8	0.4	2.4	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|296242357|ref|YP_003649844.1|	-	3.2e-05	24.3	1.1	0.0033	17.8	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|296242357|ref|YP_003649844.1|	-	3.7e-05	23.9	11.2	0.00018	21.8	1.1	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|296242357|ref|YP_003649844.1|	-	3.9e-05	23.5	14.7	0.00066	19.6	3.5	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|296242357|ref|YP_003649844.1|	-	0.00038	21.1	3.5	0.0034	18.1	0.0	2.6	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|296242357|ref|YP_003649844.1|	-	0.013	16.3	1.3	0.013	16.3	1.3	2.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|296242357|ref|YP_003649844.1|	-	0.027	15.0	0.5	0.027	15.0	0.5	2.7	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|296242357|ref|YP_003649844.1|	-	0.11	13.5	16.1	1.5	10.0	1.8	2.5	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Big_8	PF17961.1	gi|296242357|ref|YP_003649844.1|	-	0.18	11.9	0.0	0.26	11.5	0.0	1.2	1	0	0	1	1	1	0	Bacterial	Ig	domain
Fer4_17	PF13534.6	gi|296242357|ref|YP_003649844.1|	-	0.31	11.6	12.5	0.22	12.1	3.4	2.4	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|296242357|ref|YP_003649844.1|	-	4.5	7.5	11.8	3.2	8.0	2.7	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Pyr_redox_2	PF07992.14	gi|296242358|ref|YP_003649845.1|	-	5.5e-29	101.3	0.3	7.7e-29	100.8	0.3	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Fer2_4	PF13510.6	gi|296242358|ref|YP_003649845.1|	-	1.1e-22	79.9	0.0	2.1e-22	79.0	0.0	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Pyr_redox_3	PF13738.6	gi|296242358|ref|YP_003649845.1|	-	1.3e-10	41.0	1.6	1.6e-06	27.6	0.0	2.8	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|296242358|ref|YP_003649845.1|	-	1.8e-08	34.1	6.2	1e-05	25.0	0.5	2.6	3	0	0	3	3	3	2	FAD	binding	domain
Thi4	PF01946.17	gi|296242358|ref|YP_003649845.1|	-	4.2e-07	29.4	2.2	3.7e-05	23.1	0.1	2.4	2	0	0	2	2	2	2	Thi4	family
NAD_binding_8	PF13450.6	gi|296242358|ref|YP_003649845.1|	-	2.1e-05	24.7	6.6	0.014	15.7	0.7	3.0	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|296242358|ref|YP_003649845.1|	-	3.1e-05	24.4	8.7	0.0033	17.9	0.8	3.2	3	1	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|296242358|ref|YP_003649845.1|	-	5e-05	22.6	9.8	0.0012	18.0	0.6	3.6	4	0	0	4	4	4	2	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|296242358|ref|YP_003649845.1|	-	9.4e-05	22.8	0.5	0.062	13.7	0.1	2.5	2	0	0	2	2	2	2	Putative	NAD(P)-binding
GIDA	PF01134.22	gi|296242358|ref|YP_003649845.1|	-	0.00038	19.6	7.5	0.053	12.6	0.4	3.3	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|296242358|ref|YP_003649845.1|	-	0.0007	18.4	5.7	0.0034	16.1	0.6	2.4	2	0	0	2	2	2	1	HI0933-like	protein
Shikimate_DH	PF01488.20	gi|296242358|ref|YP_003649845.1|	-	0.0025	17.9	0.4	0.53	10.3	0.0	2.6	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.16	gi|296242358|ref|YP_003649845.1|	-	0.0027	17.4	0.1	0.0064	16.2	0.1	1.7	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
FAD_oxidored	PF12831.7	gi|296242358|ref|YP_003649845.1|	-	0.0055	16.1	2.0	0.016	14.6	0.1	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|296242358|ref|YP_003649845.1|	-	0.0062	15.9	1.2	0.25	10.7	0.1	2.3	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|296242358|ref|YP_003649845.1|	-	0.028	13.5	5.7	0.06	12.4	0.7	2.7	3	0	0	3	3	3	0	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|296242358|ref|YP_003649845.1|	-	0.03	13.6	0.1	0.03	13.6	0.1	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DAO	PF01266.24	gi|296242358|ref|YP_003649845.1|	-	0.041	13.5	11.9	0.28	10.7	2.2	3.6	2	2	0	4	4	4	0	FAD	dependent	oxidoreductase
F420_oxidored	PF03807.17	gi|296242358|ref|YP_003649845.1|	-	0.081	13.5	1.6	3.6	8.2	0.4	3.5	3	1	0	3	3	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
ThiF	PF00899.21	gi|296242358|ref|YP_003649845.1|	-	0.14	11.5	5.7	0.23	10.8	0.2	2.3	2	0	0	2	2	2	0	ThiF	family
AIRS_C	PF02769.22	gi|296242359|ref|YP_003649846.1|	-	1.6e-21	77.0	0.1	2.4e-21	76.5	0.1	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|296242359|ref|YP_003649846.1|	-	3.4e-15	56.5	0.0	7.5e-15	55.4	0.0	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
HupF_HypC	PF01455.18	gi|296242360|ref|YP_003649847.1|	-	3.6e-19	68.7	0.1	4.2e-19	68.5	0.1	1.1	1	0	0	1	1	1	1	HupF/HypC	family
Sua5_yciO_yrdC	PF01300.18	gi|296242361|ref|YP_003649848.1|	-	1.9e-41	141.5	0.0	3e-41	140.9	0.0	1.3	1	0	0	1	1	1	1	Telomere	recombination
zf-HYPF	PF07503.12	gi|296242361|ref|YP_003649848.1|	-	7.9e-30	102.3	5.7	6.7e-15	54.6	1.0	2.4	2	0	0	2	2	2	2	HypF	finger
HypF_C	PF17788.1	gi|296242361|ref|YP_003649848.1|	-	1.5e-23	83.4	0.0	2.6e-23	82.7	0.0	1.4	1	0	0	1	1	1	1	HypF	Kae1-like	domain
Acylphosphatase	PF00708.18	gi|296242361|ref|YP_003649848.1|	-	2e-18	66.6	0.0	3.9e-18	65.6	0.0	1.5	1	0	0	1	1	1	1	Acylphosphatase
DUF4428	PF14471.6	gi|296242361|ref|YP_003649848.1|	-	0.0012	18.7	0.0	1.3	9.0	0.0	2.5	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4428)
Peptidase_M22	PF00814.25	gi|296242361|ref|YP_003649848.1|	-	0.065	12.9	0.0	0.26	11.0	0.0	1.9	2	0	0	2	2	2	0	Glycoprotease	family
Oxidored_q6	PF01058.22	gi|296242362|ref|YP_003649849.1|	-	2.9e-28	98.3	0.0	3.7e-28	98.0	0.0	1.1	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
NepR	PF18557.1	gi|296242362|ref|YP_003649849.1|	-	0.0074	15.9	0.2	0.55	9.9	0.1	2.3	2	0	0	2	2	2	2	Anti-sigma	factor	NepR
Fer4_2	PF12797.7	gi|296242362|ref|YP_003649849.1|	-	0.085	13.0	1.8	1.8	8.8	0.1	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Complex1_30kDa	PF00329.19	gi|296242363|ref|YP_003649850.1|	-	1.4e-16	61.3	0.0	1.6e-16	61.0	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Complex1_49kDa	PF00346.19	gi|296242364|ref|YP_003649851.1|	-	1.5e-68	230.8	1.1	2.7e-66	223.4	1.1	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|296242364|ref|YP_003649851.1|	-	4.2e-15	55.6	6.9	1e-11	44.5	1.1	3.7	3	1	1	4	4	4	2	Nickel-dependent	hydrogenase
Fer4	PF00037.27	gi|296242365|ref|YP_003649852.1|	-	9.8e-14	50.5	9.7	1.9e-07	30.6	2.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|296242365|ref|YP_003649852.1|	-	6.5e-11	42.2	17.8	3.1e-07	30.4	10.6	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|296242365|ref|YP_003649852.1|	-	1.8e-10	40.8	13.7	1.3e-08	34.9	5.2	1.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|296242365|ref|YP_003649852.1|	-	2.4e-10	40.9	7.0	3.7e-10	40.2	7.0	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296242365|ref|YP_003649852.1|	-	1.2e-09	38.2	3.4	3e-05	24.0	0.5	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|296242365|ref|YP_003649852.1|	-	5.3e-09	35.8	10.5	6.4e-05	22.8	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|296242365|ref|YP_003649852.1|	-	1.7e-07	31.7	2.6	0.0034	17.9	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296242365|ref|YP_003649852.1|	-	6.9e-07	29.0	9.8	0.0022	18.0	1.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|296242365|ref|YP_003649852.1|	-	7e-07	30.1	6.6	0.002	19.0	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|296242365|ref|YP_003649852.1|	-	0.0001	22.7	8.5	0.0041	17.5	10.4	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|296242365|ref|YP_003649852.1|	-	0.00031	21.5	13.3	0.0037	18.1	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|296242365|ref|YP_003649852.1|	-	0.0016	19.3	4.0	0.8	10.6	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|296242365|ref|YP_003649852.1|	-	0.0016	19.1	3.5	0.84	10.4	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.6	gi|296242365|ref|YP_003649852.1|	-	0.0053	16.9	2.2	0.28	11.4	0.2	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|296242365|ref|YP_003649852.1|	-	0.009	16.5	10.3	0.46	11.1	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|296242365|ref|YP_003649852.1|	-	0.025	15.1	5.2	2	9.0	1.1	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
MrpF_PhaF	PF04066.13	gi|296242366|ref|YP_003649853.1|	-	4e-11	43.1	2.5	4e-11	43.1	2.5	1.7	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
PhaG_MnhG_YufB	PF03334.14	gi|296242367|ref|YP_003649854.1|	-	1.6e-16	60.3	8.5	2.1e-16	59.9	8.5	1.2	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
DUF1656	PF07869.12	gi|296242367|ref|YP_003649854.1|	-	0.17	11.9	3.2	9.2	6.4	0.2	2.6	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1656)
TPPK_C	PF12555.8	gi|296242367|ref|YP_003649854.1|	-	0.36	10.9	0.2	0.36	10.9	0.2	2.5	3	0	0	3	3	3	0	Thiamine	pyrophosphokinase	C	terminal
CBP_BcsF	PF11120.8	gi|296242367|ref|YP_003649854.1|	-	0.45	10.7	1.9	15	5.8	0.1	2.2	2	0	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsF
DUF4040	PF13244.6	gi|296242368|ref|YP_003649855.1|	-	2e-13	50.3	2.4	2e-13	50.3	2.4	1.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4040)
DUF2070	PF09843.9	gi|296242368|ref|YP_003649855.1|	-	0.0011	17.3	2.9	0.0013	17.1	2.9	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
Trep_Strep	PF09605.10	gi|296242368|ref|YP_003649855.1|	-	0.0066	16.4	0.5	0.0066	16.4	0.5	1.6	2	0	0	2	2	2	1	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
LPG_synthase_TM	PF03706.13	gi|296242368|ref|YP_003649855.1|	-	0.27	10.7	8.0	0.35	10.3	8.0	1.3	1	1	0	1	1	1	0	Lysylphosphatidylglycerol	synthase	TM	region
CreD	PF06123.12	gi|296242368|ref|YP_003649855.1|	-	0.31	9.8	5.6	0.35	9.6	5.6	1.1	1	0	0	1	1	1	0	Inner	membrane	protein	CreD
MnhB	PF04039.13	gi|296242369|ref|YP_003649856.1|	-	3e-19	69.5	15.7	3e-19	69.5	15.7	2.2	2	1	0	2	2	2	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
Oxidored_q2	PF00420.24	gi|296242370|ref|YP_003649857.1|	-	4.9e-21	74.3	0.3	7.9e-21	73.7	0.3	1.3	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Cyt_c_ox_IV	PF12270.8	gi|296242370|ref|YP_003649857.1|	-	0.017	15.3	0.3	0.023	14.8	0.3	1.2	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	IV
DUF4370	PF14290.6	gi|296242370|ref|YP_003649857.1|	-	0.19	11.6	0.0	0.22	11.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4370)
MNHE	PF01899.16	gi|296242371|ref|YP_003649858.1|	-	1.7e-43	147.9	0.9	1.9e-43	147.7	0.9	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
5TM-5TMR_LYT	PF07694.12	gi|296242371|ref|YP_003649858.1|	-	6.4e-05	22.5	1.1	8.5e-05	22.1	1.1	1.1	1	0	0	1	1	1	1	5TMR	of	5TMR-LYT
ArsP_1	PF03773.13	gi|296242371|ref|YP_003649858.1|	-	0.0017	17.6	1.8	0.0021	17.3	1.8	1.2	1	0	0	1	1	1	1	Predicted	permease
DUF1129	PF06570.11	gi|296242371|ref|YP_003649858.1|	-	0.31	10.5	2.1	0.33	10.4	0.9	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
Proton_antipo_M	PF00361.20	gi|296242372|ref|YP_003649859.1|	-	1.5e-51	175.4	24.5	4.1e-51	173.9	24.5	1.8	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|296242372|ref|YP_003649859.1|	-	0.04	14.0	3.0	0.04	14.0	0.1	2.7	2	0	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF3493	PF11998.8	gi|296242372|ref|YP_003649859.1|	-	0.33	11.1	3.7	2.3	8.5	0.0	3.6	3	1	0	3	3	3	0	Low	psii	accumulation1	/	Rep27
NADHdh	PF00146.21	gi|296242374|ref|YP_003649861.1|	-	1.1e-49	169.4	19.9	1.4e-49	169.1	19.9	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Thioredoxin_7	PF13899.6	gi|296242375|ref|YP_003649862.1|	-	0.00012	22.2	0.2	0.00022	21.3	0.2	1.4	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|296242375|ref|YP_003649862.1|	-	0.0013	19.2	0.2	0.0044	17.5	0.2	1.7	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_4	PF13462.6	gi|296242375|ref|YP_003649862.1|	-	0.0019	18.4	0.0	0.003	17.8	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Glutaredoxin	PF00462.24	gi|296242375|ref|YP_003649862.1|	-	0.033	14.4	0.3	0.046	13.9	0.3	1.5	1	1	0	1	1	1	0	Glutaredoxin
Thioredoxin_3	PF13192.6	gi|296242375|ref|YP_003649862.1|	-	0.035	14.2	0.0	0.058	13.5	0.0	1.6	1	1	0	1	1	1	0	Thioredoxin	domain
AhpC-TSA	PF00578.21	gi|296242375|ref|YP_003649862.1|	-	0.044	13.7	0.1	3.9	7.4	0.0	2.1	2	0	0	2	2	2	0	AhpC/TSA	family
DUF5351	PF17302.2	gi|296242375|ref|YP_003649862.1|	-	0.061	13.5	0.0	0.1	12.8	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5351)
RseC_MucC	PF04246.12	gi|296242376|ref|YP_003649863.1|	-	9.8	6.1	11.8	14	5.6	5.6	2.5	2	0	0	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
DHH	PF01368.20	gi|296242377|ref|YP_003649864.1|	-	0.00087	19.5	0.0	0.0013	18.9	0.0	1.2	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.19	gi|296242377|ref|YP_003649864.1|	-	0.0049	17.3	0.2	0.012	16.1	0.2	1.8	1	1	0	1	1	1	1	DHHA1	domain
Protoglobin	PF11563.8	gi|296242377|ref|YP_003649864.1|	-	0.097	12.6	0.0	3.3	7.6	0.0	2.3	2	0	0	2	2	2	0	Protoglobin
Glyco_hydro_57	PF03065.15	gi|296242378|ref|YP_003649865.1|	-	1.6e-29	103.1	9.1	7.8e-28	97.6	0.1	2.6	3	0	0	3	3	3	2	Glycosyl	hydrolase	family	57
Glycos_transf_1	PF00534.20	gi|296242379|ref|YP_003649866.1|	-	1.4e-21	76.7	0.0	4.9e-21	75.0	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.11	gi|296242379|ref|YP_003649866.1|	-	5.2e-20	72.2	0.0	1.2e-19	71.0	0.0	1.6	1	0	0	1	1	1	1	Starch	synthase	catalytic	domain
Glyco_trans_1_4	PF13692.6	gi|296242379|ref|YP_003649866.1|	-	1.5e-16	61.1	0.0	2.8e-16	60.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|296242379|ref|YP_003649866.1|	-	1.4e-09	38.2	0.0	3.1e-08	33.8	0.0	2.8	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|296242379|ref|YP_003649866.1|	-	1.2e-05	25.9	0.0	3.9e-05	24.1	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|296242379|ref|YP_003649866.1|	-	7.6e-05	23.0	0.0	0.00035	20.9	0.0	2.2	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
DUF1925	PF09094.11	gi|296242380|ref|YP_003649867.1|	-	1.2e-32	112.0	1.3	2.3e-32	111.1	1.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1925)
Glyco_hydro_57	PF03065.15	gi|296242380|ref|YP_003649867.1|	-	2e-31	109.4	0.3	3.3e-31	108.7	0.3	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
DUF1926	PF09095.11	gi|296242380|ref|YP_003649867.1|	-	8.2e-25	88.0	0.0	2.5e-12	47.0	0.0	2.1	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF1926)
Glyco_hydro_38N	PF01074.22	gi|296242380|ref|YP_003649867.1|	-	0.0082	15.5	0.0	0.019	14.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	38	N-terminal	domain
Glyco_hydro_57	PF03065.15	gi|296242381|ref|YP_003649868.1|	-	2.8e-67	227.2	0.8	4.4e-67	226.6	0.8	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
HTH_DeoR	PF08220.12	gi|296242383|ref|YP_003649870.1|	-	4.3e-06	26.4	0.0	1e-05	25.2	0.0	1.7	1	1	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|296242383|ref|YP_003649870.1|	-	6.2e-06	25.7	0.0	1.3e-05	24.7	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|296242383|ref|YP_003649870.1|	-	3.7e-05	23.6	0.4	0.00019	21.3	0.1	2.4	2	1	1	3	3	3	1	Winged	helix-turn-helix
MerR	PF00376.23	gi|296242383|ref|YP_003649870.1|	-	8.8e-05	22.2	0.1	0.0004	20.1	0.0	2.1	2	0	0	2	2	2	1	MerR	family	regulatory	protein
DUF4423	PF14394.6	gi|296242383|ref|YP_003649870.1|	-	0.00088	19.0	0.1	0.0015	18.3	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_17	PF12728.7	gi|296242383|ref|YP_003649870.1|	-	0.00098	19.3	1.2	0.0033	17.6	0.0	2.6	3	1	1	4	4	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|296242383|ref|YP_003649870.1|	-	0.001	19.0	1.1	0.0033	17.3	0.0	2.3	3	0	0	3	3	2	1	HTH	domain
GntR	PF00392.21	gi|296242383|ref|YP_003649870.1|	-	0.0011	18.5	0.4	0.0049	16.5	0.0	2.2	3	0	0	3	3	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.10	gi|296242383|ref|YP_003649870.1|	-	0.0012	18.6	0.0	0.0019	18.0	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|296242383|ref|YP_003649870.1|	-	0.0013	18.8	0.0	0.0035	17.3	0.0	1.7	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Fe_dep_repress	PF01325.19	gi|296242383|ref|YP_003649870.1|	-	0.0014	18.8	0.4	0.0072	16.5	0.1	2.2	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|296242383|ref|YP_003649870.1|	-	0.002	17.9	0.0	0.0057	16.4	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
AbiEi_4	PF13338.6	gi|296242383|ref|YP_003649870.1|	-	0.0023	18.0	0.0	0.0068	16.5	0.0	1.8	1	0	0	1	1	1	1	Transcriptional	regulator,	AbiEi	antitoxin
Rrf2	PF02082.20	gi|296242383|ref|YP_003649870.1|	-	0.003	17.9	0.1	0.006	16.9	0.1	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_29	PF13551.6	gi|296242383|ref|YP_003649870.1|	-	0.0051	16.8	0.0	0.0097	15.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
FaeA	PF04703.12	gi|296242383|ref|YP_003649870.1|	-	0.0084	16.5	0.0	0.021	15.2	0.0	1.7	1	0	0	1	1	1	1	FaeA-like	protein
TrmB	PF01978.19	gi|296242383|ref|YP_003649870.1|	-	0.0086	15.9	0.2	0.016	15.1	0.2	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
RQC	PF09382.10	gi|296242383|ref|YP_003649870.1|	-	0.0092	15.8	0.2	0.047	13.5	0.0	1.9	2	0	0	2	2	2	1	RQC	domain
ANAPC2	PF08672.11	gi|296242383|ref|YP_003649870.1|	-	0.0099	16.4	0.0	0.54	10.8	0.0	2.9	3	0	0	3	3	3	1	Anaphase	promoting	complex	(APC)	subunit	2
HTH_36	PF13730.6	gi|296242383|ref|YP_003649870.1|	-	0.019	14.9	0.1	0.12	12.4	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|296242383|ref|YP_003649870.1|	-	0.019	14.8	0.7	0.052	13.4	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|296242383|ref|YP_003649870.1|	-	0.019	15.1	0.0	0.04	14.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|296242383|ref|YP_003649870.1|	-	0.02	14.9	0.4	0.22	11.6	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix
HTH_Crp_2	PF13545.6	gi|296242383|ref|YP_003649870.1|	-	0.021	14.8	0.0	0.04	13.9	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Mnd1	PF03962.15	gi|296242383|ref|YP_003649870.1|	-	0.031	14.6	0.0	0.075	13.3	0.0	1.6	1	0	0	1	1	1	0	Mnd1	HTH	domain
HTH_8	PF02954.19	gi|296242383|ref|YP_003649870.1|	-	0.036	13.9	0.0	0.076	12.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_1	PF00126.27	gi|296242383|ref|YP_003649870.1|	-	0.039	13.9	0.0	0.083	12.9	0.0	1.7	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MarR_2	PF12802.7	gi|296242383|ref|YP_003649870.1|	-	0.046	13.6	0.0	0.086	12.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
PCI	PF01399.27	gi|296242383|ref|YP_003649870.1|	-	0.046	14.2	0.1	0.12	12.9	0.1	1.6	1	0	0	1	1	1	0	PCI	domain
MerR_1	PF13411.6	gi|296242383|ref|YP_003649870.1|	-	0.047	13.8	0.0	0.16	12.1	0.0	2.0	2	1	0	2	2	1	0	MerR	HTH	family	regulatory	protein
Topoisom_bac	PF01131.20	gi|296242383|ref|YP_003649870.1|	-	0.051	12.6	0.2	0.084	11.9	0.2	1.3	1	0	0	1	1	1	0	DNA	topoisomerase
Hormone_3	PF00159.18	gi|296242383|ref|YP_003649870.1|	-	0.06	13.4	0.2	2.9	8.1	0.0	2.9	4	0	0	4	4	2	0	Pancreatic	hormone	peptide
NUMOD1	PF07453.13	gi|296242383|ref|YP_003649870.1|	-	0.061	13.6	0.0	0.25	11.7	0.0	2.1	1	0	0	1	1	1	0	NUMOD1	domain
FeoC	PF09012.10	gi|296242383|ref|YP_003649870.1|	-	0.062	13.4	0.1	0.72	10.0	0.0	2.4	2	1	1	3	3	3	0	FeoC	like	transcriptional	regulator
RuvB_C	PF05491.13	gi|296242383|ref|YP_003649870.1|	-	0.094	12.6	0.1	0.22	11.4	0.1	1.6	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
Ribosomal_S19e	PF01090.19	gi|296242383|ref|YP_003649870.1|	-	0.1	12.3	0.1	0.15	11.8	0.1	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S19e
SMC_Nse1	PF07574.13	gi|296242383|ref|YP_003649870.1|	-	0.11	12.4	0.0	0.43	10.4	0.0	1.8	2	0	0	2	2	2	0	Nse1	non-SMC	component	of	SMC5-6	complex
ABC2_membrane_3	PF12698.7	gi|296242384|ref|YP_003649871.1|	-	7.3e-20	71.4	20.9	9.6e-20	71.0	20.9	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|296242384|ref|YP_003649871.1|	-	1.4e-15	57.4	15.7	1.9e-15	57.0	15.7	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|296242384|ref|YP_003649871.1|	-	0.0074	16.3	10.0	0.0074	16.3	10.0	2.9	2	1	1	3	3	3	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|296242385|ref|YP_003649872.1|	-	4.5e-28	98.5	0.0	6.2e-28	98.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242385|ref|YP_003649872.1|	-	3.5e-10	40.2	0.5	0.00034	20.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|296242385|ref|YP_003649872.1|	-	0.0084	16.6	0.1	0.014	15.9	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|296242385|ref|YP_003649872.1|	-	0.031	14.0	0.0	0.053	13.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|296242385|ref|YP_003649872.1|	-	0.049	12.3	0.0	3.2	6.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
SMC_N	PF02463.19	gi|296242385|ref|YP_003649872.1|	-	0.11	11.9	0.0	7.2	6.0	0.1	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.22	gi|296242385|ref|YP_003649872.1|	-	0.15	11.7	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_29	PF13555.6	gi|296242385|ref|YP_003649872.1|	-	0.18	11.6	0.0	0.32	10.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|296242385|ref|YP_003649872.1|	-	0.19	11.4	0.0	0.28	10.9	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
IFT20	PF14931.6	gi|296242386|ref|YP_003649873.1|	-	0.018	15.2	0.4	0.068	13.3	0.2	2.0	2	0	0	2	2	2	0	Intraflagellar	transport	complex	B,	subunit	20
ThiP_synth	PF10120.9	gi|296242387|ref|YP_003649874.1|	-	2.1e-38	131.5	0.0	4.4e-38	130.5	0.0	1.5	2	0	0	2	2	2	1	Thiamine-phosphate	synthase
HTH_37	PF13744.6	gi|296242387|ref|YP_003649874.1|	-	0.00091	19.1	0.0	0.0017	18.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|296242387|ref|YP_003649874.1|	-	0.039	13.5	0.0	0.11	12.1	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
SAC3_GANP	PF03399.16	gi|296242387|ref|YP_003649874.1|	-	0.042	13.2	0.1	0.057	12.8	0.1	1.1	1	0	0	1	1	1	0	SAC3/GANP	family
HTH_23	PF13384.6	gi|296242387|ref|YP_003649874.1|	-	0.067	13.0	0.1	0.14	12.0	0.1	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
MarR_2	PF12802.7	gi|296242387|ref|YP_003649874.1|	-	0.16	11.9	0.1	0.4	10.6	0.1	1.6	1	0	0	1	1	1	0	MarR	family
ApbA_C	PF08546.11	gi|296242388|ref|YP_003649875.1|	-	2.5e-29	102.0	0.0	4.2e-29	101.3	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
ApbA	PF02558.16	gi|296242388|ref|YP_003649875.1|	-	9.6e-24	83.8	0.0	1.7e-23	83.0	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.17	gi|296242388|ref|YP_003649875.1|	-	1.8e-06	28.4	0.0	2e-05	25.1	0.0	2.5	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.23	gi|296242388|ref|YP_003649875.1|	-	3.4e-05	23.9	0.0	7.9e-05	22.7	0.0	1.6	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|296242388|ref|YP_003649875.1|	-	0.0011	19.2	0.0	0.28	11.5	0.0	2.5	2	1	0	2	2	2	2	Saccharopine	dehydrogenase	NADP	binding	domain
Nif11	PF07862.11	gi|296242388|ref|YP_003649875.1|	-	0.057	13.7	0.1	0.13	12.6	0.1	1.6	1	1	0	1	1	1	0	Nif11	domain
Shikimate_DH	PF01488.20	gi|296242388|ref|YP_003649875.1|	-	0.092	12.8	0.0	0.22	11.6	0.0	1.6	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Pantoate_transf	PF02548.15	gi|296242389|ref|YP_003649876.1|	-	2.4e-105	351.6	0.2	2.7e-105	351.5	0.2	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.6	gi|296242389|ref|YP_003649876.1|	-	0.00011	21.7	2.9	0.0096	15.4	0.5	2.9	1	1	1	3	3	3	2	Phosphoenolpyruvate	phosphomutase
Asp_Glu_race	PF01177.22	gi|296242389|ref|YP_003649876.1|	-	0.071	12.9	0.0	0.34	10.7	0.0	2.0	2	1	0	2	2	2	0	Asp/Glu/Hydantoin	racemase
ABC2_membrane_3	PF12698.7	gi|296242390|ref|YP_003649877.1|	-	2.1e-13	50.1	33.2	1.3e-12	47.5	33.6	1.9	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|296242390|ref|YP_003649877.1|	-	5.3e-05	22.6	41.6	0.00066	19.1	41.5	2.2	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|296242390|ref|YP_003649877.1|	-	9.7e-05	22.4	9.1	9.7e-05	22.4	9.1	3.0	2	1	1	3	3	3	1	ABC-2	family	transporter	protein
SyrA	PF11089.8	gi|296242390|ref|YP_003649877.1|	-	0.39	10.8	6.2	0.12	12.4	1.2	2.8	2	0	0	2	2	2	0	Exopolysaccharide	production	repressor
UPF0220	PF05255.11	gi|296242390|ref|YP_003649877.1|	-	2	8.0	12.4	6.8e+02	-0.3	12.4	2.9	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0220)
ABC_tran	PF00005.27	gi|296242391|ref|YP_003649878.1|	-	5.6e-25	88.4	0.0	8.4e-25	87.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242391|ref|YP_003649878.1|	-	3.9e-19	69.6	0.2	2.3e-11	44.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|296242391|ref|YP_003649878.1|	-	4.6e-05	23.0	0.0	0.1	12.0	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|296242391|ref|YP_003649878.1|	-	0.0011	18.7	0.0	0.0022	17.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|296242391|ref|YP_003649878.1|	-	0.0014	18.4	0.0	0.0038	17.0	0.0	1.7	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|296242391|ref|YP_003649878.1|	-	0.0024	18.4	0.2	0.0046	17.5	0.2	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|296242391|ref|YP_003649878.1|	-	0.0097	15.6	0.1	0.015	15.0	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|296242391|ref|YP_003649878.1|	-	0.018	15.5	0.1	0.029	14.8	0.1	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|296242391|ref|YP_003649878.1|	-	0.02	15.3	0.0	0.035	14.5	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
SRP54	PF00448.22	gi|296242391|ref|YP_003649878.1|	-	0.022	14.4	0.1	0.055	13.1	0.1	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
ATPase_2	PF01637.18	gi|296242391|ref|YP_003649878.1|	-	0.039	13.9	0.0	0.055	13.4	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|296242391|ref|YP_003649878.1|	-	0.044	14.0	0.2	0.11	12.7	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|296242391|ref|YP_003649878.1|	-	0.065	13.3	0.0	1.3	9.1	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.6	gi|296242391|ref|YP_003649878.1|	-	0.083	11.5	0.1	1.1	7.8	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.6	gi|296242391|ref|YP_003649878.1|	-	0.1	12.9	0.1	0.18	12.1	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|296242391|ref|YP_003649878.1|	-	0.12	12.3	0.0	0.26	11.2	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.14	gi|296242391|ref|YP_003649878.1|	-	0.14	12.2	0.0	0.25	11.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_27	PF13514.6	gi|296242391|ref|YP_003649878.1|	-	0.14	11.7	0.0	0.22	11.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
PhosphMutase	PF10143.9	gi|296242392|ref|YP_003649879.1|	-	1.5e-52	177.9	0.0	2.1e-52	177.5	0.0	1.2	1	0	0	1	1	1	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.18	gi|296242392|ref|YP_003649879.1|	-	8.4e-29	100.7	0.0	1.1e-28	100.3	0.0	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|296242392|ref|YP_003649879.1|	-	0.00051	19.7	0.0	0.0022	17.7	0.0	1.7	2	1	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Alk_phosphatase	PF00245.20	gi|296242392|ref|YP_003649879.1|	-	0.044	12.7	0.0	0.12	11.3	0.0	1.6	2	0	0	2	2	2	0	Alkaline	phosphatase
2-Hacid_dh_C	PF02826.19	gi|296242392|ref|YP_003649879.1|	-	0.17	11.2	0.0	0.33	10.3	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
PPS_PS	PF02006.16	gi|296242394|ref|YP_003649881.1|	-	6.7e-76	253.8	1.1	8.1e-76	253.5	1.1	1.1	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
DFP	PF04127.15	gi|296242396|ref|YP_003649883.1|	-	2.9e-52	177.2	0.0	1.5e-51	174.9	0.0	1.9	2	0	0	2	2	2	1	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|296242396|ref|YP_003649883.1|	-	1.2e-34	119.3	0.1	1.9e-34	118.7	0.1	1.3	1	0	0	1	1	1	1	Flavoprotein
Acetyltransf_1	PF00583.25	gi|296242397|ref|YP_003649884.1|	-	3.5e-20	72.4	0.1	4.7e-20	72.0	0.1	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|296242397|ref|YP_003649884.1|	-	5.5e-13	49.1	0.3	8.4e-13	48.6	0.3	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|296242397|ref|YP_003649884.1|	-	3.8e-11	42.8	0.1	5.7e-11	42.2	0.1	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_10	PF13673.7	gi|296242397|ref|YP_003649884.1|	-	7.9e-11	42.0	0.0	1e-10	41.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|296242397|ref|YP_003649884.1|	-	1.9e-07	31.2	0.0	4.4e-07	30.0	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|296242397|ref|YP_003649884.1|	-	0.00014	21.6	0.0	0.00022	21.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|296242397|ref|YP_003649884.1|	-	0.00016	22.4	0.0	0.00023	21.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|296242397|ref|YP_003649884.1|	-	0.00039	20.6	0.1	0.00085	19.5	0.1	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|296242397|ref|YP_003649884.1|	-	0.0092	15.6	0.0	0.01	15.4	0.0	1.3	1	0	0	1	1	1	1	GNAT	acetyltransferase
Acetyltransf_15	PF17013.5	gi|296242397|ref|YP_003649884.1|	-	0.1	12.0	0.1	0.12	11.8	0.1	1.3	1	0	0	1	1	1	0	Putative	acetyl-transferase
tRNA-synt_2	PF00152.20	gi|296242398|ref|YP_003649885.1|	-	2.6e-89	299.4	0.0	3.1e-89	299.2	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|296242398|ref|YP_003649885.1|	-	5e-10	39.2	0.4	8e-10	38.6	0.4	1.3	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|296242398|ref|YP_003649885.1|	-	0.0069	15.9	0.1	0.064	12.7	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
HhH-GPD	PF00730.25	gi|296242399|ref|YP_003649886.1|	-	1.3e-20	73.8	0.0	2.3e-20	73.1	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|296242399|ref|YP_003649886.1|	-	4e-08	32.7	0.3	1.2e-07	31.2	0.0	1.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|296242399|ref|YP_003649886.1|	-	0.0027	18.3	0.1	0.035	14.7	0.0	2.5	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
Adenine_glyco	PF03352.13	gi|296242399|ref|YP_003649886.1|	-	0.0093	15.8	0.1	0.013	15.3	0.1	1.2	1	0	0	1	1	1	1	Methyladenine	glycosylase
EndIII_4Fe-2S	PF10576.9	gi|296242399|ref|YP_003649886.1|	-	0.035	14.4	2.9	0.058	13.7	2.9	1.4	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
MSC	PF09402.10	gi|296242399|ref|YP_003649886.1|	-	0.058	12.9	0.1	0.11	11.9	0.0	1.5	2	0	0	2	2	2	0	Man1-Src1p-C-terminal	domain
DUF4358	PF14270.6	gi|296242399|ref|YP_003649886.1|	-	0.11	12.7	0.1	0.22	11.8	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4358)
Met_10	PF02475.16	gi|296242400|ref|YP_003649887.1|	-	2.4e-57	193.9	0.0	3.9e-57	193.2	0.0	1.3	1	0	0	1	1	1	1	Met-10+	like-protein
TRM	PF02005.16	gi|296242400|ref|YP_003649887.1|	-	1.7e-07	30.7	0.0	2.3e-07	30.3	0.0	1.1	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_15	PF09445.10	gi|296242400|ref|YP_003649887.1|	-	1.8e-05	24.4	0.0	2.4e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
PrmA	PF06325.13	gi|296242400|ref|YP_003649887.1|	-	5.6e-05	22.7	0.0	9.1e-05	22.0	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.14	gi|296242400|ref|YP_003649887.1|	-	0.0009	18.8	0.0	0.0016	18.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|296242400|ref|YP_003649887.1|	-	0.0042	17.0	0.1	0.0095	15.9	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|296242400|ref|YP_003649887.1|	-	0.009	15.8	0.0	0.012	15.3	0.0	1.2	1	0	0	1	1	1	1	Lysine	methyltransferase
Methyltrans_SAM	PF10672.9	gi|296242400|ref|YP_003649887.1|	-	0.035	13.3	0.0	0.052	12.7	0.0	1.2	1	0	0	1	1	1	0	S-adenosylmethionine-dependent	methyltransferase
Methyltransf_31	PF13847.6	gi|296242400|ref|YP_003649887.1|	-	0.2	11.4	0.0	0.34	10.7	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
PhoH	PF02562.16	gi|296242401|ref|YP_003649888.1|	-	1.7e-47	161.5	0.0	2.7e-47	160.9	0.0	1.3	1	0	0	1	1	1	1	PhoH-like	protein
KH_5	PF13184.6	gi|296242401|ref|YP_003649888.1|	-	8.8e-09	35.3	0.3	5.4e-06	26.4	0.0	2.6	2	0	0	2	2	2	2	NusA-like	KH	domain
KH_2	PF07650.17	gi|296242401|ref|YP_003649888.1|	-	1.7e-08	34.2	3.4	6.3e-08	32.3	1.3	2.4	1	1	1	2	2	2	1	KH	domain
KH_1	PF00013.29	gi|296242401|ref|YP_003649888.1|	-	1.8e-05	24.5	0.4	0.0018	18.0	0.1	2.5	2	0	0	2	2	2	1	KH	domain
KH_4	PF13083.6	gi|296242401|ref|YP_003649888.1|	-	0.0041	17.0	1.0	0.041	13.7	0.3	2.6	2	0	0	2	2	2	1	KH	domain
DUF2774	PF11242.8	gi|296242401|ref|YP_003649888.1|	-	0.014	15.6	0.0	0.033	14.4	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2774)
ABC_tran	PF00005.27	gi|296242401|ref|YP_003649888.1|	-	0.14	12.7	0.1	0.52	10.8	0.1	1.9	2	0	0	2	2	2	0	ABC	transporter
AAA_30	PF13604.6	gi|296242401|ref|YP_003649888.1|	-	0.15	11.8	0.0	0.46	10.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
PCNA_N	PF00705.18	gi|296242402|ref|YP_003649889.1|	-	2.6e-16	59.5	0.1	5.5e-15	55.2	0.0	2.2	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|296242402|ref|YP_003649889.1|	-	1.4e-06	28.5	0.0	2.5e-05	24.4	0.0	2.4	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad9	PF04139.13	gi|296242402|ref|YP_003649889.1|	-	0.0058	16.1	0.0	0.0074	15.8	0.0	1.3	1	0	0	1	1	1	1	Rad9
GSH-S_ATP	PF02955.16	gi|296242402|ref|YP_003649889.1|	-	0.04	13.3	0.1	5.1	6.5	0.0	2.2	1	1	1	2	2	2	0	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
RuvA_C	PF07499.13	gi|296242402|ref|YP_003649889.1|	-	0.069	13.6	0.0	0.22	12.0	0.0	1.9	2	0	0	2	2	2	0	RuvA,	C-terminal	domain
Mrr_cat	PF04471.12	gi|296242403|ref|YP_003649890.1|	-	0.00097	19.1	0.0	0.0019	18.2	0.0	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
RTX_C	PF08339.10	gi|296242403|ref|YP_003649890.1|	-	0.091	12.8	0.1	0.16	12.0	0.1	1.3	1	0	0	1	1	1	0	RTX	C-terminal	domain
DS	PF01916.17	gi|296242404|ref|YP_003649891.1|	-	1e-98	330.2	0.0	1.2e-98	330.0	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
DUF5636	PF18686.1	gi|296242404|ref|YP_003649891.1|	-	0.19	11.9	0.0	0.27	11.4	0.0	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5636)
DUF1743	PF08489.11	gi|296242405|ref|YP_003649892.1|	-	1.9e-35	121.4	0.0	3.3e-35	120.7	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
tRNA_anti-codon	PF01336.25	gi|296242405|ref|YP_003649892.1|	-	2.6e-05	24.1	0.0	4.8e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|296242405|ref|YP_003649892.1|	-	0.00089	19.1	1.7	0.0022	17.9	1.7	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
C1_1	PF00130.22	gi|296242405|ref|YP_003649892.1|	-	0.012	15.5	0.5	0.028	14.3	0.5	1.5	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
RNA_POL_M_15KD	PF02150.16	gi|296242405|ref|YP_003649892.1|	-	0.014	15.3	1.5	0.029	14.2	1.5	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.7	gi|296242405|ref|YP_003649892.1|	-	0.029	14.3	0.7	0.058	13.4	0.7	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DZR	PF12773.7	gi|296242405|ref|YP_003649892.1|	-	0.045	13.8	0.4	0.11	12.6	0.4	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
C1_2	PF03107.16	gi|296242405|ref|YP_003649892.1|	-	0.071	13.4	0.1	0.2	12.0	0.1	1.7	1	0	0	1	1	1	0	C1	domain
zinc_ribbon_2	PF13240.6	gi|296242405|ref|YP_003649892.1|	-	0.53	10.1	5.3	2.3	8.1	0.4	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Aminotran_1_2	PF00155.21	gi|296242406|ref|YP_003649893.1|	-	3.5e-48	164.6	0.0	4.3e-48	164.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|296242406|ref|YP_003649893.1|	-	0.00018	20.9	0.0	0.00037	19.9	0.0	1.4	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|296242406|ref|YP_003649893.1|	-	0.001	17.7	0.0	0.0015	17.1	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
HD_3	PF13023.6	gi|296242407|ref|YP_003649894.1|	-	6.1e-16	58.8	0.0	1.9e-15	57.2	0.0	1.7	1	1	0	1	1	1	1	HD	domain
HD_2	PF12917.7	gi|296242407|ref|YP_003649894.1|	-	8.6e-11	41.9	0.1	1.6e-10	41.1	0.1	1.4	1	1	0	1	1	1	1	HD	containing	hydrolase-like	enzyme
HD	PF01966.22	gi|296242407|ref|YP_003649894.1|	-	2.6e-06	27.7	0.1	9.3e-06	25.9	0.1	1.9	1	1	0	1	1	1	1	HD	domain
B56	PF01603.20	gi|296242407|ref|YP_003649894.1|	-	0.04	12.9	0.1	0.1	11.5	0.0	1.6	1	1	0	1	1	1	0	Protein	phosphatase	2A	regulatory	B	subunit	(B56	family)
Peptidase_M55	PF04951.13	gi|296242408|ref|YP_003649895.1|	-	5e-81	272.0	0.0	5.6e-81	271.8	0.0	1.0	1	0	0	1	1	1	1	D-aminopeptidase
DUF553	PF04473.12	gi|296242409|ref|YP_003649896.1|	-	1.5e-06	27.9	0.1	2.5e-06	27.1	0.1	1.4	1	0	0	1	1	1	1	Transglutaminase-like	domain
SHE3	PF17078.5	gi|296242409|ref|YP_003649896.1|	-	0.00016	21.5	1.0	0.00026	20.8	1.0	1.3	1	0	0	1	1	1	1	SWI5-dependent	HO	expression	protein	3
ZapB	PF06005.12	gi|296242409|ref|YP_003649896.1|	-	0.004	17.5	2.7	0.004	17.5	2.7	1.9	2	0	0	2	2	1	1	Cell	division	protein	ZapB
APG6_N	PF17675.1	gi|296242409|ref|YP_003649896.1|	-	0.0048	17.4	1.3	0.0092	16.5	1.3	1.4	1	0	0	1	1	1	1	Apg6	coiled-coil	region
HALZ	PF02183.18	gi|296242409|ref|YP_003649896.1|	-	0.0055	16.9	5.4	0.013	15.7	5.4	1.7	1	0	0	1	1	1	1	Homeobox	associated	leucine	zipper
GAS	PF13851.6	gi|296242409|ref|YP_003649896.1|	-	0.011	15.1	1.9	0.019	14.3	1.9	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
YabA	PF06156.13	gi|296242409|ref|YP_003649896.1|	-	0.014	16.0	1.1	0.025	15.2	1.1	1.3	1	0	0	1	1	1	0	Initiation	control	protein	YabA
Peptidase_C93	PF06035.11	gi|296242409|ref|YP_003649896.1|	-	0.022	14.5	0.0	0.036	13.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	transglutaminase-like	cysteine	proteinase	BTLCP
FlaC_arch	PF05377.11	gi|296242409|ref|YP_003649896.1|	-	0.045	14.1	1.8	0.064	13.7	0.8	1.8	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
JIP_LZII	PF16471.5	gi|296242409|ref|YP_003649896.1|	-	0.048	13.8	2.3	0.096	12.9	2.3	1.4	1	0	0	1	1	1	0	JNK-interacting	protein	leucine	zipper	II
TSC22	PF01166.18	gi|296242409|ref|YP_003649896.1|	-	0.053	13.8	3.1	0.054	13.8	0.6	2.2	1	1	1	2	2	2	0	TSC-22/dip/bun	family
Takusan	PF04822.13	gi|296242409|ref|YP_003649896.1|	-	0.056	13.3	0.4	0.11	12.4	0.4	1.4	1	0	0	1	1	1	0	Takusan
Shugoshin_N	PF07558.11	gi|296242409|ref|YP_003649896.1|	-	0.16	11.8	0.8	0.61	10.0	0.8	2.0	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
DivIC	PF04977.15	gi|296242409|ref|YP_003649896.1|	-	0.18	11.6	2.0	0.16	11.8	0.5	1.7	2	0	0	2	2	2	0	Septum	formation	initiator
bZIP_1	PF00170.21	gi|296242409|ref|YP_003649896.1|	-	0.28	11.3	3.9	0.62	10.2	3.9	1.6	1	0	0	1	1	1	0	bZIP	transcription	factor
MCC-bdg_PDZ	PF10506.9	gi|296242409|ref|YP_003649896.1|	-	0.36	10.9	3.7	0.9	9.6	3.7	1.6	1	0	0	1	1	1	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Macro	PF01661.21	gi|296242410|ref|YP_003649897.1|	-	2.8e-27	95.1	0.2	3.6e-27	94.7	0.2	1.1	1	0	0	1	1	1	1	Macro	domain
Macro_2	PF14519.6	gi|296242410|ref|YP_003649897.1|	-	0.028	13.7	0.1	0.095	12.0	0.1	1.7	1	1	0	1	1	1	0	Macro-like	domain
Rib_5-P_isom_A	PF06026.14	gi|296242411|ref|YP_003649898.1|	-	7.5e-50	168.9	0.0	9.4e-50	168.6	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
YdjM	PF04307.14	gi|296242412|ref|YP_003649899.1|	-	1.1e-19	70.4	3.6	1.5e-18	66.7	3.6	2.0	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|296242412|ref|YP_003649899.1|	-	0.00019	21.5	0.4	0.00019	21.5	0.4	1.2	1	0	0	1	1	1	1	Zinc	dependent	phospholipase	C
DUF4184	PF13803.6	gi|296242412|ref|YP_003649899.1|	-	0.056	13.1	1.7	5.5	6.6	0.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4184)
JIP_LZII	PF16471.5	gi|296242413|ref|YP_003649900.1|	-	0.00022	21.3	2.6	0.00051	20.2	2.6	1.6	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
ATG16	PF08614.11	gi|296242413|ref|YP_003649900.1|	-	0.017	15.4	0.6	0.025	14.8	0.6	1.2	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
ZapB	PF06005.12	gi|296242413|ref|YP_003649900.1|	-	0.036	14.5	4.1	0.068	13.6	4.1	1.4	1	0	0	1	1	1	0	Cell	division	protein	ZapB
Baculo_PEP_C	PF04513.12	gi|296242413|ref|YP_003649900.1|	-	0.052	13.6	6.3	0.042	13.9	2.2	2.5	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Lebercilin	PF15619.6	gi|296242413|ref|YP_003649900.1|	-	0.055	13.1	0.7	0.082	12.6	0.7	1.2	1	0	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF641	PF04859.12	gi|296242413|ref|YP_003649900.1|	-	0.058	13.7	0.0	0.099	13.0	0.0	1.3	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
Spc42p	PF11544.8	gi|296242413|ref|YP_003649900.1|	-	0.084	12.9	0.4	0.23	11.5	0.4	1.7	1	0	0	1	1	1	0	Spindle	pole	body	component	Spc42p
HOOK	PF05622.12	gi|296242413|ref|YP_003649900.1|	-	0.14	10.2	0.1	0.21	9.7	0.1	1.1	1	0	0	1	1	1	0	HOOK	protein
Tropomyosin_1	PF12718.7	gi|296242413|ref|YP_003649900.1|	-	0.26	11.4	2.6	0.43	10.7	2.6	1.2	1	0	0	1	1	1	0	Tropomyosin	like
Snapin_Pallidin	PF14712.6	gi|296242413|ref|YP_003649900.1|	-	0.28	11.6	1.3	0.6	10.6	1.3	1.5	1	0	0	1	1	1	0	Snapin/Pallidin
FlaC_arch	PF05377.11	gi|296242413|ref|YP_003649900.1|	-	2.1	8.8	9.8	0.37	11.2	2.1	3.3	3	0	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
IF-2B	PF01008.17	gi|296242414|ref|YP_003649901.1|	-	6.8e-51	173.1	0.0	9.2e-51	172.7	0.0	1.1	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
ECH_2	PF16113.5	gi|296242414|ref|YP_003649901.1|	-	0.14	11.7	0.0	0.19	11.2	0.0	1.1	1	0	0	1	1	1	0	Enoyl-CoA	hydratase/isomerase
IF-2B	PF01008.17	gi|296242415|ref|YP_003649902.1|	-	1.2e-86	290.4	1.0	1.4e-86	290.2	1.0	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
DeoRC	PF00455.22	gi|296242415|ref|YP_003649902.1|	-	0.078	12.9	1.8	1.8	8.5	0.1	2.4	2	0	0	2	2	2	0	DeoR	C	terminal	sensor	domain
VASP_tetra	PF08776.11	gi|296242416|ref|YP_003649903.1|	-	0.00063	19.3	1.3	0.065	12.8	3.7	2.4	2	0	0	2	2	2	1	VASP	tetramerisation	domain
FeS_assembly_P	PF01883.19	gi|296242417|ref|YP_003649904.1|	-	2.4e-16	59.7	0.1	3.1e-16	59.3	0.1	1.2	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
HTH_34	PF13601.6	gi|296242417|ref|YP_003649904.1|	-	0.1	12.8	0.0	0.18	12.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
tRNA-synt_2b	PF00587.25	gi|296242418|ref|YP_003649905.1|	-	2.9e-34	118.6	0.0	5.5e-34	117.7	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.22	gi|296242418|ref|YP_003649905.1|	-	6.4e-22	77.8	4.7	1.4e-21	76.7	4.7	1.6	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
Tropomyosin_1	PF12718.7	gi|296242418|ref|YP_003649905.1|	-	0.02	15.0	5.6	0.049	13.8	5.6	1.6	1	0	0	1	1	1	0	Tropomyosin	like
CSTF2_hinge	PF14327.6	gi|296242418|ref|YP_003649905.1|	-	0.14	12.6	0.4	0.59	10.6	0.2	2.1	2	0	0	2	2	2	0	Hinge	domain	of	cleavage	stimulation	factor	subunit	2
Thioredoxin_3	PF13192.6	gi|296242419|ref|YP_003649906.1|	-	2e-05	24.5	0.0	2.9e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
PfkB	PF00294.24	gi|296242420|ref|YP_003649907.1|	-	1.5e-06	27.7	0.0	2.2e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Lactamase_B_3	PF13483.6	gi|296242422|ref|YP_003649909.1|	-	3.3e-39	134.4	0.0	5.1e-39	133.8	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|296242422|ref|YP_003649909.1|	-	3.1e-11	43.2	0.3	2.1e-06	27.4	0.0	2.4	2	1	1	3	3	3	2	Beta-lactamase	superfamily	domain
DUF2325	PF10087.9	gi|296242422|ref|YP_003649909.1|	-	0.007	16.5	0.1	0.079	13.1	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2325)
Lactamase_B	PF00753.27	gi|296242422|ref|YP_003649909.1|	-	0.14	12.2	2.8	2.2	8.2	1.7	2.1	2	0	0	2	2	2	0	Metallo-beta-lactamase	superfamily
Glyco_trans_2_3	PF13632.6	gi|296242423|ref|YP_003649910.1|	-	1.6e-14	54.3	1.8	3.2e-14	53.3	0.0	2.3	3	0	0	3	3	3	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.26	gi|296242423|ref|YP_003649910.1|	-	2.5e-12	46.9	0.0	5.3e-12	45.9	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|296242423|ref|YP_003649910.1|	-	8.9e-11	42.1	0.0	1.9e-10	41.0	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|296242423|ref|YP_003649910.1|	-	0.0035	16.8	0.0	1.5	8.3	0.0	2.3	1	1	1	2	2	2	2	Glycosyl	transferase	family	21
Cellulose_synt	PF03552.14	gi|296242423|ref|YP_003649910.1|	-	0.028	12.9	0.4	0.045	12.2	0.4	1.3	1	0	0	1	1	1	0	Cellulose	synthase
DEAD_assoc	PF08494.11	gi|296242424|ref|YP_003649911.1|	-	5.8e-53	179.5	0.1	2.9e-51	174.0	0.0	2.4	2	0	0	2	2	2	1	DEAD/H	associated
DEAD	PF00270.29	gi|296242424|ref|YP_003649911.1|	-	9e-31	107.0	0.2	1.8e-29	102.7	0.0	2.4	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|296242424|ref|YP_003649911.1|	-	3e-16	59.7	0.7	1.4e-15	57.6	0.6	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|296242424|ref|YP_003649911.1|	-	1.4e-10	41.5	0.0	1.1e-08	35.3	0.0	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA	PF00004.29	gi|296242424|ref|YP_003649911.1|	-	9.4e-05	22.9	7.2	0.51	10.8	0.8	4.1	2	2	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
SNF2_N	PF00176.23	gi|296242424|ref|YP_003649911.1|	-	0.0032	16.2	0.2	0.017	13.8	0.2	2.2	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
AsnA	PF03590.15	gi|296242424|ref|YP_003649911.1|	-	0.01	15.6	3.9	0.03	14.1	0.3	2.4	2	0	0	2	2	2	0	Aspartate-ammonia	ligase
AAA_19	PF13245.6	gi|296242424|ref|YP_003649911.1|	-	0.015	15.6	0.0	0.18	12.1	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|296242424|ref|YP_003649911.1|	-	0.033	14.5	0.8	5.8	7.2	0.0	3.6	3	1	0	3	3	3	0	AAA	domain
UvrD-helicase	PF00580.21	gi|296242424|ref|YP_003649911.1|	-	0.86	9.1	3.6	5.5	6.4	0.0	3.0	3	0	0	3	3	3	0	UvrD/REP	helicase	N-terminal	domain
DUF2192	PF09958.9	gi|296242425|ref|YP_003649912.1|	-	1.5e-88	296.2	4.7	1.7e-88	296.0	4.7	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2192)
IF2_N	PF04760.15	gi|296242426|ref|YP_003649913.1|	-	0.017	15.0	0.5	0.84	9.5	0.0	2.5	3	0	0	3	3	3	0	Translation	initiation	factor	IF-2,	N-terminal	region
BACON	PF13004.7	gi|296242426|ref|YP_003649913.1|	-	0.047	13.7	0.1	0.063	13.3	0.1	1.2	1	0	0	1	1	1	0	Putative	binding	domain,	N-terminal
DUF4806	PF16064.5	gi|296242427|ref|YP_003649914.1|	-	0.033	14.5	0.0	0.058	13.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4806)
HSL_N	PF06350.12	gi|296242427|ref|YP_003649914.1|	-	0.075	12.0	0.0	0.085	11.8	0.0	1.1	1	0	0	1	1	1	0	Hormone-sensitive	lipase	(HSL)	N-terminus
HTH_3	PF01381.22	gi|296242428|ref|YP_003649915.1|	-	8.3e-05	22.6	0.0	0.00015	21.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_Tnp_ISL3	PF13542.6	gi|296242428|ref|YP_003649915.1|	-	0.00018	20.9	0.1	0.00026	20.3	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_28	PF13518.6	gi|296242428|ref|YP_003649915.1|	-	0.00096	19.2	0.2	0.0031	17.6	0.1	1.9	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|296242428|ref|YP_003649915.1|	-	0.0028	17.5	0.4	0.016	15.2	0.2	2.2	2	0	0	2	2	2	1	HTH	domain
HTH_31	PF13560.6	gi|296242428|ref|YP_003649915.1|	-	0.0078	16.5	0.0	0.012	15.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|296242428|ref|YP_003649915.1|	-	0.01	15.4	0.2	0.033	13.8	0.2	1.9	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
YdaS_antitoxin	PF15943.5	gi|296242428|ref|YP_003649915.1|	-	0.016	15.0	0.0	0.027	14.3	0.0	1.3	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_23	PF13384.6	gi|296242428|ref|YP_003649915.1|	-	0.039	13.8	0.8	0.12	12.3	0.2	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
MetOD2	PF18548.1	gi|296242428|ref|YP_003649915.1|	-	0.052	13.7	0.6	0.075	13.2	0.6	1.3	1	0	0	1	1	1	0	Metanogen	output	domain	2
HTH_10	PF04967.12	gi|296242428|ref|YP_003649915.1|	-	0.053	13.3	0.0	0.13	12.0	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|296242428|ref|YP_003649915.1|	-	0.059	13.2	0.1	0.15	11.9	0.1	1.8	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
MerR	PF00376.23	gi|296242428|ref|YP_003649915.1|	-	0.077	12.8	0.0	0.15	11.8	0.0	1.5	1	0	0	1	1	1	0	MerR	family	regulatory	protein
GP3_package	PF16677.5	gi|296242428|ref|YP_003649915.1|	-	0.084	13.0	0.0	0.12	12.5	0.0	1.3	1	0	0	1	1	1	0	DNA-packaging	protein	gp3
HTH_Tnp_1	PF01527.20	gi|296242428|ref|YP_003649915.1|	-	0.092	13.1	0.0	0.18	12.1	0.0	1.5	1	1	0	1	1	1	0	Transposase
HTH_29	PF13551.6	gi|296242428|ref|YP_003649915.1|	-	0.15	12.1	0.1	0.45	10.6	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
Aminotran_1_2	PF00155.21	gi|296242430|ref|YP_003649917.1|	-	1.7e-39	136.0	0.0	2e-39	135.8	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.7	gi|296242430|ref|YP_003649917.1|	-	2.8e-07	29.7	0.0	4.6e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
Aminotran_5	PF00266.19	gi|296242430|ref|YP_003649917.1|	-	8.1e-05	21.7	0.0	0.00011	21.3	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|296242430|ref|YP_003649917.1|	-	0.0004	19.8	0.0	0.00062	19.2	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Radical_SAM	PF04055.21	gi|296242431|ref|YP_003649918.1|	-	5.1e-08	33.5	0.1	2.3e-07	31.3	0.1	2.2	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|296242431|ref|YP_003649918.1|	-	0.0046	17.0	0.0	0.011	15.7	0.0	1.6	1	0	0	1	1	1	1	B12	binding	domain
OB_aCoA_assoc	PF01796.17	gi|296242433|ref|YP_003649920.1|	-	1.9e-10	40.6	0.0	2.5e-10	40.2	0.0	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|296242433|ref|YP_003649920.1|	-	6.9e-10	38.6	2.7	9.8e-10	38.1	2.7	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Methyltransf_13	PF08421.11	gi|296242433|ref|YP_003649920.1|	-	0.012	15.8	0.5	1.9	8.8	0.1	2.3	2	0	0	2	2	2	0	Putative	zinc	binding	domain
TackOD1	PF18551.1	gi|296242433|ref|YP_003649920.1|	-	0.018	14.7	0.2	0.027	14.2	0.2	1.2	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
HypA	PF01155.19	gi|296242433|ref|YP_003649920.1|	-	0.091	12.8	0.4	0.15	12.0	0.4	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF2767	PF10965.8	gi|296242433|ref|YP_003649920.1|	-	0.11	12.5	0.3	1.8	8.6	0.0	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2767)
NRDD	PF13597.6	gi|296242433|ref|YP_003649920.1|	-	0.3	9.8	0.7	0.42	9.3	0.7	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
ACP_syn_III_C	PF08541.10	gi|296242434|ref|YP_003649921.1|	-	8.9e-11	41.8	0.0	6.4e-10	39.1	0.0	2.3	2	1	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
Thiolase_N	PF00108.23	gi|296242434|ref|YP_003649921.1|	-	0.00016	21.1	0.0	0.00064	19.2	0.1	1.8	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|296242434|ref|YP_003649921.1|	-	0.00024	20.9	0.4	0.0011	18.8	0.2	2.0	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
HMG_CoA_synt_C	PF08540.10	gi|296242434|ref|YP_003649921.1|	-	0.00038	20.2	0.1	0.0094	15.6	0.0	2.1	2	0	0	2	2	2	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
ABC_tran	PF00005.27	gi|296242435|ref|YP_003649922.1|	-	3e-28	99.0	0.0	5e-28	98.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|296242435|ref|YP_003649922.1|	-	1.5e-17	63.9	0.1	2.9e-17	62.9	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|296242435|ref|YP_003649922.1|	-	0.0075	16.1	0.3	0.018	14.9	0.0	1.8	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
ATPase	PF06745.13	gi|296242435|ref|YP_003649922.1|	-	0.045	13.1	1.0	2.4	7.4	0.2	2.3	2	0	0	2	2	2	0	KaiC
AAA_22	PF13401.6	gi|296242435|ref|YP_003649922.1|	-	0.081	13.2	1.0	0.24	11.7	1.0	1.9	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|296242436|ref|YP_003649923.1|	-	3.4e-29	102.1	0.0	4.9e-29	101.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|296242436|ref|YP_003649923.1|	-	9.8e-21	74.1	0.1	1.7e-20	73.3	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|296242436|ref|YP_003649923.1|	-	5.1e-07	29.8	0.4	4.3e-05	23.5	0.2	2.1	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|296242436|ref|YP_003649923.1|	-	8.2e-06	25.4	0.6	0.00019	20.9	0.2	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
TniB	PF05621.11	gi|296242436|ref|YP_003649923.1|	-	0.0036	16.7	0.2	0.059	12.8	0.2	2.2	2	0	0	2	2	2	1	Bacterial	TniB	protein
AAA_22	PF13401.6	gi|296242436|ref|YP_003649923.1|	-	0.0052	17.1	0.7	1.5	9.1	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|296242436|ref|YP_003649923.1|	-	0.01	15.4	0.0	0.17	11.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|296242436|ref|YP_003649923.1|	-	0.028	14.2	0.0	0.055	13.2	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|296242436|ref|YP_003649923.1|	-	0.033	14.1	0.1	0.091	12.7	0.0	1.7	2	0	0	2	2	2	0	RsgA	GTPase
RNA_helicase	PF00910.22	gi|296242436|ref|YP_003649923.1|	-	0.04	14.3	0.0	0.09	13.2	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
ATP-synt_ab	PF00006.25	gi|296242436|ref|YP_003649923.1|	-	0.049	13.3	0.0	0.073	12.7	0.0	1.5	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
GCD14	PF08704.10	gi|296242436|ref|YP_003649923.1|	-	0.065	12.9	0.2	1.5	8.4	0.0	2.1	2	0	0	2	2	2	0	tRNA	methyltransferase	complex	GCD14	subunit
Mg_chelatase	PF01078.21	gi|296242436|ref|YP_003649923.1|	-	0.073	12.4	0.0	1.1	8.5	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
PRK	PF00485.18	gi|296242436|ref|YP_003649923.1|	-	0.09	12.5	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
FlpD	PF02662.16	gi|296242436|ref|YP_003649923.1|	-	0.12	12.3	0.0	0.21	11.6	0.0	1.4	1	0	0	1	1	1	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
NACHT	PF05729.12	gi|296242436|ref|YP_003649923.1|	-	0.19	11.7	0.0	0.35	10.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.6	gi|296242436|ref|YP_003649923.1|	-	0.2	11.4	0.1	0.62	9.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
DnaB_C	PF03796.15	gi|296242436|ref|YP_003649923.1|	-	0.2	10.9	0.3	14	4.9	0.2	2.1	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
zf-CCCH	PF00642.24	gi|296242436|ref|YP_003649923.1|	-	0.21	11.5	1.5	0.34	10.9	1.5	1.3	1	0	0	1	1	1	0	Zinc	finger	C-x8-C-x5-C-x3-H	type	(and	similar)
AAA_16	PF13191.6	gi|296242436|ref|YP_003649923.1|	-	0.22	11.9	0.2	0.42	11.0	0.0	1.5	2	0	0	2	2	1	0	AAA	ATPase	domain
Radical_SAM	PF04055.21	gi|296242437|ref|YP_003649924.1|	-	1.7e-17	64.3	0.0	3.9e-17	63.1	0.0	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
T2SSM	PF04612.12	gi|296242437|ref|YP_003649924.1|	-	0.028	14.5	0.1	0.058	13.5	0.1	1.4	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	M
BPD_transp_1	PF00528.22	gi|296242438|ref|YP_003649925.1|	-	2.7e-21	76.2	13.1	2.7e-21	76.2	13.1	1.9	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
GAS	PF13851.6	gi|296242438|ref|YP_003649925.1|	-	0.015	14.6	0.6	0.023	14.0	0.6	1.2	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
IFT57	PF10498.9	gi|296242438|ref|YP_003649925.1|	-	0.033	13.2	0.3	0.056	12.4	0.3	1.2	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
Yuri_gagarin	PF15934.5	gi|296242438|ref|YP_003649925.1|	-	0.044	13.6	0.1	0.07	13.0	0.1	1.3	1	0	0	1	1	1	0	Yuri	gagarin
DASH_Duo1	PF08651.10	gi|296242438|ref|YP_003649925.1|	-	0.048	13.4	2.7	6.3	6.7	1.8	3.7	3	1	1	4	4	4	0	DASH	complex	subunit	Duo1
BRE1	PF08647.11	gi|296242438|ref|YP_003649925.1|	-	0.052	13.6	0.8	0.091	12.8	0.8	1.3	1	0	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
Sec34	PF04136.15	gi|296242438|ref|YP_003649925.1|	-	0.093	12.6	1.6	0.14	12.0	1.2	1.4	2	0	0	2	2	2	0	Sec34-like	family
ATG16	PF08614.11	gi|296242438|ref|YP_003649925.1|	-	0.096	12.9	2.4	0.15	12.3	2.4	1.1	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
Laminin_II	PF06009.12	gi|296242438|ref|YP_003649925.1|	-	0.19	11.8	3.0	0.36	10.8	3.0	1.3	1	0	0	1	1	1	0	Laminin	Domain	II
YabA	PF06156.13	gi|296242438|ref|YP_003649925.1|	-	0.19	12.4	0.5	0.38	11.4	0.5	1.4	1	0	0	1	1	1	0	Initiation	control	protein	YabA
Med9	PF07544.13	gi|296242438|ref|YP_003649925.1|	-	0.2	11.7	0.8	0.65	10.1	0.8	1.9	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF2205	PF10224.9	gi|296242438|ref|YP_003649925.1|	-	0.3	11.1	4.4	0.26	11.3	1.7	2.3	2	1	0	2	2	2	0	Short	coiled-coil	protein
FAM196	PF15265.6	gi|296242438|ref|YP_003649925.1|	-	0.43	10.0	0.7	0.58	9.6	0.7	1.1	1	0	0	1	1	1	0	FAM196	family
OppC_N	PF12911.7	gi|296242438|ref|YP_003649925.1|	-	1.1	9.3	4.8	0.61	10.1	0.7	2.8	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DivIC	PF04977.15	gi|296242438|ref|YP_003649925.1|	-	1.7	8.4	6.3	0.12	12.1	0.5	2.1	2	0	0	2	2	2	0	Septum	formation	initiator
BLOC1_2	PF10046.9	gi|296242438|ref|YP_003649925.1|	-	6.2	7.2	6.3	1.5	9.2	2.6	1.8	2	0	0	2	2	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
BPD_transp_1	PF00528.22	gi|296242439|ref|YP_003649926.1|	-	3.7e-34	118.1	17.1	3.7e-34	118.1	17.1	2.5	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
Doppel	PF11466.8	gi|296242439|ref|YP_003649926.1|	-	0.73	9.5	3.8	1.9	8.2	2.6	2.4	2	0	0	2	2	2	0	Prion-like	protein	Doppel
SBP_bac_5	PF00496.22	gi|296242440|ref|YP_003649927.1|	-	7.7e-22	77.8	5.2	1.5e-17	63.7	0.0	2.8	2	2	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
tRNA-synt_2	PF00152.20	gi|296242442|ref|YP_003649929.1|	-	3.1e-79	266.3	0.1	4e-79	265.9	0.1	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA-synt_2d	PF01409.20	gi|296242442|ref|YP_003649929.1|	-	0.032	13.7	0.1	0.098	12.1	0.0	1.7	2	0	0	2	2	2	0	tRNA	synthetases	class	II	core	domain	(F)
PadR	PF03551.14	gi|296242443|ref|YP_003649930.1|	-	2.7e-05	24.0	0.4	6.3e-05	22.9	0.0	1.7	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
PaaX	PF07848.12	gi|296242443|ref|YP_003649930.1|	-	0.071	13.3	0.0	0.1	12.8	0.0	1.3	1	0	0	1	1	1	0	PaaX-like	protein
Inos-1-P_synth	PF01658.17	gi|296242444|ref|YP_003649931.1|	-	5.1e-19	68.5	0.0	8.8e-19	67.8	0.0	1.4	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
NAD_binding_5	PF07994.12	gi|296242444|ref|YP_003649931.1|	-	0.0092	15.4	0.0	0.013	14.9	0.0	1.3	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
ADK	PF00406.22	gi|296242445|ref|YP_003649932.1|	-	8.3e-52	175.3	0.0	1e-51	175.0	0.0	1.0	1	0	0	1	1	1	1	Adenylate	kinase
AAA_17	PF13207.6	gi|296242445|ref|YP_003649932.1|	-	9.3e-26	90.9	0.1	1.4e-25	90.3	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
ADK_lid	PF05191.14	gi|296242445|ref|YP_003649932.1|	-	2.5e-12	46.6	3.2	3.8e-12	46.0	3.2	1.3	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
AAA_18	PF13238.6	gi|296242445|ref|YP_003649932.1|	-	2.1e-07	31.5	0.0	3.4e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Hydin_ADK	PF17213.3	gi|296242445|ref|YP_003649932.1|	-	5.5e-05	23.5	1.9	0.015	15.6	0.1	2.5	2	1	1	3	3	3	2	Hydin	Adenylate	kinase-like	domain
AAA_33	PF13671.6	gi|296242445|ref|YP_003649932.1|	-	0.0013	18.9	0.0	0.003	17.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Zn_ribbon_recom	PF13408.6	gi|296242445|ref|YP_003649932.1|	-	0.072	13.6	0.8	0.69	10.5	0.7	2.4	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
AAA_28	PF13521.6	gi|296242445|ref|YP_003649932.1|	-	0.11	12.8	0.0	0.19	12.0	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|296242445|ref|YP_003649932.1|	-	0.18	11.7	0.0	1.3	8.9	0.0	2.0	1	1	0	1	1	1	0	NACHT	domain
HTH_24	PF13412.6	gi|296242447|ref|YP_003649934.1|	-	9.6e-06	25.1	4.1	1.3e-05	24.7	3.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|296242447|ref|YP_003649934.1|	-	0.002	17.9	1.7	0.0048	16.7	1.2	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_34	PF13601.6	gi|296242447|ref|YP_003649934.1|	-	0.035	14.3	0.1	0.1	12.8	0.1	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
RNA_pol_Rpb2_4	PF04566.13	gi|296242447|ref|YP_003649934.1|	-	0.041	14.2	0.4	4.7	7.6	0.0	2.4	1	1	1	2	2	2	0	RNA	polymerase	Rpb2,	domain	4
HTH_Mga	PF08280.11	gi|296242447|ref|YP_003649934.1|	-	0.091	12.8	0.9	0.21	11.7	0.9	1.5	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Aldo_ket_red	PF00248.21	gi|296242448|ref|YP_003649935.1|	-	3.3e-53	180.8	0.3	3.4e-51	174.2	0.3	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
RuvC	PF02075.17	gi|296242448|ref|YP_003649935.1|	-	0.058	13.3	0.0	0.092	12.6	0.0	1.3	1	0	0	1	1	1	0	Crossover	junction	endodeoxyribonuclease	RuvC
PMT2_N	PF17987.1	gi|296242448|ref|YP_003649935.1|	-	0.078	13.2	0.1	0.31	11.2	0.1	1.8	1	1	1	2	2	2	0	Phosphoethanolamine	N-methyltransferase	2	N-terminal
ThiS	PF02597.20	gi|296242449|ref|YP_003649936.1|	-	3.4e-12	46.8	0.0	3.9e-12	46.6	0.0	1.0	1	0	0	1	1	1	1	ThiS	family
ThiS-like	PF14453.6	gi|296242449|ref|YP_003649936.1|	-	0.13	12.3	0.0	0.29	11.2	0.0	1.6	1	1	1	2	2	2	0	ThiS-like	ubiquitin
Acetyltransf_CG	PF14542.6	gi|296242450|ref|YP_003649937.1|	-	8.7e-23	80.3	0.0	1.6e-22	79.4	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_1	PF00583.25	gi|296242450|ref|YP_003649937.1|	-	1.3e-05	25.4	0.0	1.7e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|296242450|ref|YP_003649937.1|	-	0.00071	20.0	0.0	0.0012	19.2	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|296242450|ref|YP_003649937.1|	-	0.0036	17.2	0.0	0.0066	16.4	0.0	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|296242450|ref|YP_003649937.1|	-	0.07	12.6	0.0	0.095	12.2	0.0	1.3	1	1	0	1	1	1	0	Putative	acetyl-transferase
Acetyltransf_9	PF13527.7	gi|296242450|ref|YP_003649937.1|	-	0.12	12.5	0.0	0.51	10.4	0.0	1.9	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
Gemin6	PF06372.12	gi|296242451|ref|YP_003649938.1|	-	0.094	12.3	0.2	0.18	11.3	0.2	1.5	1	1	0	1	1	1	0	Gemin6	protein
DNA_primase_lrg	PF04104.14	gi|296242452|ref|YP_003649939.1|	-	8.2e-34	117.2	0.0	1.1e-33	116.8	0.0	1.1	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
COG6	PF06419.11	gi|296242452|ref|YP_003649939.1|	-	0.025	12.8	0.0	0.035	12.3	0.0	1.1	1	0	0	1	1	1	0	Conserved	oligomeric	complex	COG6
DUF3110	PF11360.8	gi|296242453|ref|YP_003649940.1|	-	0.067	13.4	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3110)
MarR_2	PF12802.7	gi|296242454|ref|YP_003649941.1|	-	5.2e-08	32.7	0.1	1.2e-07	31.5	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|296242454|ref|YP_003649941.1|	-	2.4e-07	30.2	0.1	4.4e-07	29.4	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|296242454|ref|YP_003649941.1|	-	2.8e-06	27.3	0.0	4.8e-06	26.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|296242454|ref|YP_003649941.1|	-	5e-06	26.2	0.0	9.4e-06	25.3	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
B-block_TFIIIC	PF04182.12	gi|296242454|ref|YP_003649941.1|	-	4.8e-05	23.4	0.0	9.8e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
TrmB	PF01978.19	gi|296242454|ref|YP_003649941.1|	-	0.00028	20.7	0.1	0.0008	19.2	0.1	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|296242454|ref|YP_003649941.1|	-	0.00041	20.8	0.1	0.00074	20.0	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|296242454|ref|YP_003649941.1|	-	0.00047	20.0	0.0	0.00076	19.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|296242454|ref|YP_003649941.1|	-	0.00055	19.8	0.2	0.0012	18.8	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_34	PF13601.6	gi|296242454|ref|YP_003649941.1|	-	0.0072	16.5	0.0	0.015	15.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|296242454|ref|YP_003649941.1|	-	0.0095	16.1	0.0	0.022	14.9	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_1	PF00126.27	gi|296242454|ref|YP_003649941.1|	-	0.051	13.5	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_36	PF13730.6	gi|296242454|ref|YP_003649941.1|	-	0.058	13.4	0.0	0.34	10.9	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|296242454|ref|YP_003649941.1|	-	0.089	12.8	0.0	0.18	11.8	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
RNA_pol_Rpc34	PF05158.12	gi|296242454|ref|YP_003649941.1|	-	0.18	11.1	0.0	0.26	10.6	0.0	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
DUF1878	PF08963.10	gi|296242455|ref|YP_003649942.1|	-	0.037	14.5	0.3	0.083	13.4	0.3	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1878)
DUF2115	PF09888.9	gi|296242455|ref|YP_003649942.1|	-	0.041	14.4	0.4	0.071	13.6	0.4	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2115)
Carb_kinase	PF01256.17	gi|296242457|ref|YP_003649944.1|	-	3.1e-49	167.6	0.5	4.1e-49	167.3	0.5	1.1	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.15	gi|296242457|ref|YP_003649944.1|	-	1e-38	132.9	0.0	4.1e-38	130.9	0.0	2.0	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
HK	PF02110.15	gi|296242457|ref|YP_003649944.1|	-	2.9e-05	23.6	0.0	5.7e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
CxxCxxCC	PF03692.15	gi|296242458|ref|YP_003649945.1|	-	1.3e-10	41.8	0.1	2e-10	41.2	0.1	1.2	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
Levi_coat	PF01819.17	gi|296242458|ref|YP_003649945.1|	-	0.18	11.8	0.0	0.25	11.4	0.0	1.2	1	0	0	1	1	1	0	Levivirus	coat	protein
DUF3344	PF11824.8	gi|296242459|ref|YP_003649946.1|	-	0.0062	16.2	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3344)
tRNA_deacylase	PF04414.12	gi|296242460|ref|YP_003649947.1|	-	1.2e-68	230.7	0.4	1.4e-68	230.5	0.4	1.0	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
TYW3	PF02676.14	gi|296242461|ref|YP_003649948.1|	-	9.2e-27	93.8	0.0	1.4e-26	93.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	TYW3
ThiI	PF02568.14	gi|296242462|ref|YP_003649949.1|	-	1.1e-37	129.5	0.0	1.6e-37	129.0	0.0	1.2	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|296242462|ref|YP_003649949.1|	-	6.9e-12	45.7	0.3	3.5e-10	40.1	0.6	2.5	1	1	1	2	2	2	1	THUMP	domain
QueC	PF06508.13	gi|296242462|ref|YP_003649949.1|	-	0.00019	21.0	0.0	0.039	13.4	0.0	2.5	2	1	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|296242462|ref|YP_003649949.1|	-	0.017	13.9	0.0	0.028	13.2	0.0	1.3	1	0	0	1	1	1	0	tRNA	methyl	transferase
ATP_bind_3	PF01171.20	gi|296242462|ref|YP_003649949.1|	-	0.076	12.8	0.0	0.18	11.5	0.0	1.7	1	0	0	1	1	1	0	PP-loop	family
tRNA_bind	PF01588.20	gi|296242463|ref|YP_003649950.1|	-	8.8e-23	80.2	0.0	9.8e-23	80.1	0.0	1.0	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
Succ_CoA_lig	PF13607.6	gi|296242464|ref|YP_003649951.1|	-	1e-53	180.9	0.7	2.8e-53	179.4	0.1	2.0	3	0	0	3	3	3	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|296242464|ref|YP_003649951.1|	-	4.9e-26	91.5	0.5	1.8e-25	89.7	0.3	2.0	2	0	0	2	2	2	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|296242464|ref|YP_003649951.1|	-	4.6e-19	68.9	0.5	1.6e-18	67.2	0.5	2.0	1	0	0	1	1	1	1	CoA	binding	domain
F420_oxidored	PF03807.17	gi|296242464|ref|YP_003649951.1|	-	0.015	15.9	1.0	1.6	9.4	0.5	3.2	3	1	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.22	gi|296242464|ref|YP_003649951.1|	-	0.071	13.9	0.1	0.27	12.0	0.0	2.1	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Metallophos_2	PF12850.7	gi|296242465|ref|YP_003649952.1|	-	0.15	12.2	0.0	0.15	12.2	0.0	1.2	1	0	0	1	1	1	0	Calcineurin-like	phosphoesterase	superfamily	domain
QRPTase_C	PF01729.19	gi|296242468|ref|YP_003649955.1|	-	2.7e-24	85.9	0.0	3.9e-24	85.3	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
NAPRTase_C	PF17956.1	gi|296242468|ref|YP_003649955.1|	-	6e-06	26.7	0.0	1.4e-05	25.5	0.0	1.5	1	0	0	1	1	1	1	Nicotinate	phosphoribosyltransferase	C-terminal	domain
NAPRTase_N	PF17767.1	gi|296242468|ref|YP_003649955.1|	-	6.4e-05	23.3	0.0	0.0052	17.2	0.0	2.3	1	1	1	2	2	2	2	Nicotinate	phosphoribosyltransferase	(NAPRTase)	N-terminal	domain
QRPTase_N	PF02749.16	gi|296242468|ref|YP_003649955.1|	-	7.3e-05	22.8	0.0	0.00014	21.8	0.0	1.5	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
UPF0047	PF01894.17	gi|296242469|ref|YP_003649956.1|	-	3.9e-31	107.6	0.0	4.7e-31	107.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
ArsA_HSP20	PF17886.1	gi|296242470|ref|YP_003649957.1|	-	4.3e-12	45.4	0.0	8.9e-12	44.4	0.0	1.6	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|296242470|ref|YP_003649957.1|	-	1.2e-09	38.3	1.6	2.6e-08	33.9	1.6	2.2	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.11	gi|296242470|ref|YP_003649957.1|	-	0.00037	20.6	0.0	0.00051	20.1	0.0	1.2	1	0	0	1	1	1	1	GvpH
CS	PF04969.16	gi|296242470|ref|YP_003649957.1|	-	0.00056	20.9	0.6	0.00087	20.3	0.6	1.3	1	0	0	1	1	1	1	CS	domain
Plk4_PB1	PF18190.1	gi|296242470|ref|YP_003649957.1|	-	0.092	12.9	0.2	0.15	12.2	0.2	1.4	1	0	0	1	1	1	0	Polo-like	Kinase	4	Polo	Box	1
PIH1_CS	PF18201.1	gi|296242470|ref|YP_003649957.1|	-	0.12	12.8	0.0	0.18	12.2	0.0	1.2	1	0	0	1	1	1	0	PIH1	CS-like	domain
Metallophos_2	PF12850.7	gi|296242471|ref|YP_003649958.1|	-	1.6e-29	103.3	0.0	1.8e-29	103.0	0.0	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|296242471|ref|YP_003649958.1|	-	3.1e-12	47.5	0.7	4.1e-08	34.0	0.3	2.1	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|296242471|ref|YP_003649958.1|	-	0.004	16.5	0.4	0.3	10.4	0.0	2.4	1	1	2	3	3	3	2	Metallophosphoesterase,	calcineurin	superfamily
Trans_reg_C	PF00486.28	gi|296242471|ref|YP_003649958.1|	-	0.13	12.4	0.0	5.8	7.1	0.0	2.3	2	0	0	2	2	2	0	Transcriptional	regulatory	protein,	C	terminal
PNP_UDP_1	PF01048.20	gi|296242472|ref|YP_003649959.1|	-	1.1e-38	132.8	0.2	1.4e-38	132.5	0.2	1.1	1	0	0	1	1	1	1	Phosphorylase	superfamily
PfkB	PF00294.24	gi|296242473|ref|YP_003649960.1|	-	2.2e-44	152.0	0.0	2.9e-44	151.6	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Microcin	PF03526.13	gi|296242476|ref|YP_003649963.1|	-	0.069	13.0	0.0	0.2	11.5	0.0	1.7	1	0	0	1	1	1	0	Colicin	E1	(microcin)	immunity	protein
Halogen_Hydrol	PF10112.9	gi|296242477|ref|YP_003649964.1|	-	0.024	14.7	0.2	0.039	14.0	0.1	1.6	1	1	1	2	2	2	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
Exosortase_EpsH	PF09721.10	gi|296242478|ref|YP_003649965.1|	-	5.5e-09	35.9	21.0	1.4e-08	34.6	21.0	1.7	1	1	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
AAA_3	PF07726.11	gi|296242479|ref|YP_003649966.1|	-	3.7e-42	143.3	0.0	5.6e-42	142.7	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|296242479|ref|YP_003649966.1|	-	3.9e-18	65.1	0.1	3.9e-18	65.1	0.1	2.1	3	0	0	3	3	3	1	AAA	lid	domain
AAA_5	PF07728.14	gi|296242479|ref|YP_003649966.1|	-	7.9e-13	48.6	0.0	1.6e-12	47.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|296242479|ref|YP_003649966.1|	-	1.6e-09	38.3	0.0	3.3e-09	37.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|296242479|ref|YP_003649966.1|	-	1.9e-06	27.7	0.2	1.4e-05	24.9	0.2	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Sigma54_activat	PF00158.26	gi|296242479|ref|YP_003649966.1|	-	5.2e-06	26.3	0.2	7.1e-05	22.6	0.2	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|296242479|ref|YP_003649966.1|	-	4.9e-05	22.8	0.2	0.0082	15.6	0.0	2.5	2	1	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.6	gi|296242479|ref|YP_003649966.1|	-	0.00014	22.3	0.1	0.0011	19.3	0.1	2.0	1	1	1	2	2	2	1	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|296242479|ref|YP_003649966.1|	-	0.00047	20.5	0.0	0.0018	18.6	0.0	1.9	2	0	0	2	2	2	1	RNA	helicase
AAA_22	PF13401.6	gi|296242479|ref|YP_003649966.1|	-	0.0012	19.1	0.1	0.0036	17.6	0.0	1.9	2	1	0	2	2	1	1	AAA	domain
MCM	PF00493.23	gi|296242479|ref|YP_003649966.1|	-	0.0014	17.7	0.0	0.041	13.0	0.0	2.3	2	0	0	2	2	2	1	MCM	P-loop	domain
AAA_30	PF13604.6	gi|296242479|ref|YP_003649966.1|	-	0.0018	18.0	0.2	0.056	13.2	0.2	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|296242479|ref|YP_003649966.1|	-	0.0055	17.2	0.0	0.01	16.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|296242479|ref|YP_003649966.1|	-	0.024	13.9	0.0	0.039	13.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.6	gi|296242479|ref|YP_003649966.1|	-	0.024	15.0	0.2	1.6	9.1	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|296242479|ref|YP_003649966.1|	-	0.05	13.8	0.1	0.11	12.6	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
TIP49	PF06068.13	gi|296242479|ref|YP_003649966.1|	-	0.058	12.6	0.0	0.093	11.9	0.0	1.4	1	0	0	1	1	1	0	TIP49	P-loop	domain
NACHT	PF05729.12	gi|296242479|ref|YP_003649966.1|	-	0.08	12.9	0.1	0.24	11.3	0.1	1.7	2	0	0	2	2	2	0	NACHT	domain
IstB_IS21	PF01695.17	gi|296242479|ref|YP_003649966.1|	-	0.082	12.6	0.0	0.21	11.3	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
TsaE	PF02367.17	gi|296242479|ref|YP_003649966.1|	-	0.11	12.5	0.2	0.3	11.1	0.2	1.7	1	1	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Sigma54_activ_2	PF14532.6	gi|296242479|ref|YP_003649966.1|	-	0.16	12.1	0.0	0.47	10.6	0.0	1.6	1	1	0	1	1	1	0	Sigma-54	interaction	domain
EF-hand_1	PF00036.32	gi|296242484|ref|YP_003649971.1|	-	0.088	12.4	0.4	0.31	10.7	0.1	2.1	2	0	0	2	2	2	0	EF	hand
DUF58	PF01882.18	gi|296242485|ref|YP_003649972.1|	-	2.9e-08	33.9	0.0	6.2e-08	32.8	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF1616	PF07760.11	gi|296242486|ref|YP_003649973.1|	-	1.2e-12	47.8	0.0	1.5e-12	47.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF1616	PF07760.11	gi|296242487|ref|YP_003649974.1|	-	2.3e-30	106.0	12.9	3.2e-30	105.5	12.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF4870	PF09685.10	gi|296242487|ref|YP_003649974.1|	-	0.087	12.9	6.8	1	9.5	0.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4870)
LMBR1	PF04791.16	gi|296242488|ref|YP_003649975.1|	-	0.00027	20.0	0.1	0.00034	19.7	0.1	1.0	1	0	0	1	1	1	1	LMBR1-like	membrane	protein
Phage_holin_3_6	PF07332.11	gi|296242488|ref|YP_003649975.1|	-	0.0048	16.9	2.2	0.0058	16.7	1.6	1.4	1	1	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF4131	PF13567.6	gi|296242488|ref|YP_003649975.1|	-	0.016	14.9	0.0	0.017	14.8	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF2254	PF10011.9	gi|296242488|ref|YP_003649975.1|	-	0.031	13.1	0.0	0.038	12.8	0.0	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2254)
DUF973	PF06157.11	gi|296242488|ref|YP_003649975.1|	-	0.39	9.7	9.1	0.44	9.6	9.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
DUF3325	PF11804.8	gi|296242488|ref|YP_003649975.1|	-	0.65	10.2	4.3	0.8	9.9	4.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3325)
Halogen_Hydrol	PF10112.9	gi|296242488|ref|YP_003649975.1|	-	0.81	9.7	3.9	1.3	9.0	3.9	1.4	1	1	0	1	1	1	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
OAD_gamma	PF04277.13	gi|296242488|ref|YP_003649975.1|	-	8	7.1	7.4	0.72	10.5	1.9	2.0	1	1	1	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
ApoB100_C	PF12491.8	gi|296242489|ref|YP_003649976.1|	-	0.00039	20.3	2.2	0.0005	20.0	0.8	2.0	2	0	0	2	2	2	1	Apolipoprotein	B100	C	terminal
Hemerythrin	PF01814.23	gi|296242489|ref|YP_003649976.1|	-	0.00081	20.0	0.2	0.00081	20.0	0.2	1.8	2	0	0	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
Lysozyme_like	PF13702.6	gi|296242489|ref|YP_003649976.1|	-	0.041	13.6	0.0	0.078	12.7	0.0	1.4	1	0	0	1	1	1	0	Lysozyme-like
SPATA6	PF14909.6	gi|296242489|ref|YP_003649976.1|	-	0.45	10.6	3.1	0.3	11.2	0.9	1.8	2	0	0	2	2	2	0	Spermatogenesis-assoc	protein	6
Peptidase_S24	PF00717.23	gi|296242492|ref|YP_003649979.1|	-	0.00049	20.0	0.1	0.0014	18.6	0.0	1.8	2	0	0	2	2	2	1	Peptidase	S24-like
Peptidase_S26	PF10502.9	gi|296242493|ref|YP_003649980.1|	-	0.041	13.7	0.0	0.057	13.2	0.0	1.2	1	0	0	1	1	1	0	Signal	peptidase,	peptidase	S26
AA_permease_2	PF13520.6	gi|296242494|ref|YP_003649981.1|	-	1.3e-15	57.1	46.5	1.4e-15	57.1	45.5	1.4	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|296242494|ref|YP_003649981.1|	-	4.8e-06	25.4	47.5	1.5e-05	23.8	47.5	1.8	1	1	0	1	1	1	1	Amino	acid	permease
HTH_20	PF12840.7	gi|296242495|ref|YP_003649982.1|	-	0.00072	19.6	0.0	0.38	10.8	0.0	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR	PF01047.22	gi|296242495|ref|YP_003649982.1|	-	0.0058	16.5	0.0	0.016	15.1	0.0	1.8	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|296242495|ref|YP_003649982.1|	-	0.025	14.5	0.0	0.069	13.1	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|296242495|ref|YP_003649982.1|	-	0.026	14.5	0.1	0.094	12.7	0.0	2.0	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|296242495|ref|YP_003649982.1|	-	0.051	13.8	0.0	0.18	12.0	0.0	1.9	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|296242495|ref|YP_003649982.1|	-	0.089	12.7	0.1	0.24	11.3	0.0	1.8	2	0	0	2	2	2	0	MarR	family
Arch_flagellin	PF01917.16	gi|296242497|ref|YP_003649984.1|	-	2.1e-30	106.1	1.6	2.9e-30	105.6	1.6	1.2	1	0	0	1	1	1	1	Archaebacterial	flagellin
Zn-ribbon_8	PF09723.10	gi|296242498|ref|YP_003649985.1|	-	0.011	15.8	0.7	0.026	14.6	0.7	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
ADK_lid	PF05191.14	gi|296242498|ref|YP_003649985.1|	-	0.013	15.4	2.0	0.7	9.9	0.9	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
NOB1_Zn_bind	PF08772.11	gi|296242498|ref|YP_003649985.1|	-	0.024	14.8	2.4	0.037	14.2	2.4	1.4	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
HypA	PF01155.19	gi|296242498|ref|YP_003649985.1|	-	0.031	14.3	0.1	0.039	14.0	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|296242498|ref|YP_003649985.1|	-	0.23	11.4	7.3	1.2	9.1	1.3	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Ribosomal_L37e	PF01907.19	gi|296242498|ref|YP_003649985.1|	-	0.65	10.2	8.0	0.24	11.6	1.9	2.1	1	1	1	2	2	2	0	Ribosomal	protein	L37e
zf_C2H2_13	PF18508.1	gi|296242498|ref|YP_003649985.1|	-	0.72	9.5	5.2	0.34	10.5	1.4	2.1	1	1	1	2	2	2	0	Zinc	finger	domain
DUF1062	PF06353.12	gi|296242498|ref|YP_003649985.1|	-	3.2	8.6	4.7	0.76	10.6	1.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1062)
tRNA-Thr_ED	PF08915.11	gi|296242499|ref|YP_003649986.1|	-	1.2e-46	158.2	0.0	2.5e-46	157.2	0.0	1.5	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|296242499|ref|YP_003649986.1|	-	5.7e-27	93.7	1.2	1.2e-26	92.6	1.2	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|296242499|ref|YP_003649986.1|	-	8.4e-15	55.2	0.1	2e-14	54.0	0.1	1.6	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
DUF3958	PF13125.6	gi|296242499|ref|YP_003649986.1|	-	0.035	14.3	2.4	0.05	13.8	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3958)
Rad51	PF08423.11	gi|296242500|ref|YP_003649987.1|	-	2.3e-93	312.2	0.0	3.1e-93	311.7	0.0	1.2	1	0	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|296242500|ref|YP_003649987.1|	-	2.5e-17	63.2	0.0	3.1e-17	62.9	0.0	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.6	gi|296242500|ref|YP_003649987.1|	-	1.7e-09	37.6	0.0	4.1e-09	36.3	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
ATPase	PF06745.13	gi|296242500|ref|YP_003649987.1|	-	5.7e-09	35.7	0.0	1.1e-08	34.7	0.0	1.5	1	1	0	1	1	1	1	KaiC
HHH_5	PF14520.6	gi|296242500|ref|YP_003649987.1|	-	0.00028	21.4	0.8	0.00076	20.0	0.0	2.1	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
IMS_HHH	PF11798.8	gi|296242500|ref|YP_003649987.1|	-	0.0095	16.2	0.0	0.066	13.6	0.0	2.3	2	0	0	2	2	2	1	IMS	family	HHH	motif
HTH_3	PF01381.22	gi|296242500|ref|YP_003649987.1|	-	0.026	14.6	0.0	0.43	10.7	0.0	2.7	3	0	0	3	3	3	0	Helix-turn-helix
HTH_31	PF13560.6	gi|296242500|ref|YP_003649987.1|	-	0.028	14.8	0.1	1.2	9.6	0.0	3.1	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|296242500|ref|YP_003649987.1|	-	0.051	13.4	0.0	0.26	11.1	0.0	2.2	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Sigma70_r3	PF04539.16	gi|296242500|ref|YP_003649987.1|	-	0.12	12.4	0.0	0.65	10.1	0.0	2.1	2	0	0	2	2	2	0	Sigma-70	region	3
DUF4089	PF13318.6	gi|296242500|ref|YP_003649987.1|	-	0.16	12.4	0.5	41	4.7	0.0	3.7	4	0	0	4	4	3	0	Protein	of	unknown	function	(DUF4089)
PAXNEB	PF05625.11	gi|296242500|ref|YP_003649987.1|	-	0.2	10.7	0.3	2.6	7.1	0.2	2.0	2	0	0	2	2	2	0	PAXNEB	protein
Arc_PepC_II	PF06847.11	gi|296242502|ref|YP_003649989.1|	-	3.7e-23	81.9	0.1	7e-23	81.0	0.1	1.5	1	0	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|296242502|ref|YP_003649989.1|	-	1.4e-06	28.6	3.8	1.4e-06	28.6	3.8	1.7	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
DUF3989	PF13150.6	gi|296242502|ref|YP_003649989.1|	-	0.096	12.4	0.1	0.52	10.1	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3989)
HIT	PF01230.23	gi|296242503|ref|YP_003649990.1|	-	1.6e-10	41.5	0.0	2.4e-10	41.0	0.0	1.2	1	0	0	1	1	1	1	HIT	domain
CwfJ_C_1	PF04677.15	gi|296242503|ref|YP_003649990.1|	-	3.5e-07	30.1	0.1	5.8e-07	29.4	0.1	1.3	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
DUF4949	PF16307.5	gi|296242504|ref|YP_003649991.1|	-	0.013	15.6	0.0	0.014	15.5	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4949)
SNF2_N	PF00176.23	gi|296242505|ref|YP_003649992.1|	-	3.4e-14	52.3	0.0	4.3e-13	48.7	0.0	2.2	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.31	gi|296242505|ref|YP_003649992.1|	-	6.7e-14	52.2	0.1	4.1e-13	49.7	0.1	2.3	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DUF3883	PF13020.6	gi|296242505|ref|YP_003649992.1|	-	9.8e-10	38.4	0.0	2e-09	37.4	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3883)
ResIII	PF04851.15	gi|296242505|ref|YP_003649992.1|	-	2.8e-09	37.2	0.0	1.1e-08	35.3	0.0	1.9	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|296242505|ref|YP_003649992.1|	-	1.3e-05	25.1	0.0	3e-05	23.9	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.6	gi|296242505|ref|YP_003649992.1|	-	0.015	15.6	0.2	21	5.4	0.0	4.1	3	1	0	3	3	3	0	AAA	domain
UPF0102	PF02021.17	gi|296242505|ref|YP_003649992.1|	-	0.11	12.8	0.1	1.5	9.1	0.0	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0102
AAA_34	PF13872.6	gi|296242505|ref|YP_003649992.1|	-	0.16	10.8	0.0	0.28	10.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
FAST_1	PF06743.15	gi|296242506|ref|YP_003649993.1|	-	0.1	12.6	0.2	9	6.3	0.0	2.5	2	0	0	2	2	2	0	FAST	kinase-like	protein,	subdomain	1
DUF499	PF04465.12	gi|296242507|ref|YP_003649994.1|	-	1.9e-76	257.7	0.7	3.2e-76	257.0	0.7	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF499)
LytR_C	PF13399.6	gi|296242507|ref|YP_003649994.1|	-	0.08	13.9	0.1	0.52	11.3	0.0	2.5	2	0	0	2	2	2	0	LytR	cell	envelope-related	transcriptional	attenuator
DUF1156	PF06634.12	gi|296242508|ref|YP_003649995.1|	-	4.6e-13	49.1	0.0	1.2e-12	47.7	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
Cons_hypoth95	PF03602.15	gi|296242508|ref|YP_003649995.1|	-	5.7e-08	32.6	0.0	0.0022	17.7	0.0	2.4	2	0	0	2	2	2	2	Conserved	hypothetical	protein	95
UPF0020	PF01170.18	gi|296242508|ref|YP_003649995.1|	-	5.8e-05	22.9	0.0	0.46	10.2	0.0	2.5	2	0	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
zf-CHCC	PF10276.9	gi|296242508|ref|YP_003649995.1|	-	2.7	8.1	4.0	5.8	7.1	1.0	2.3	2	0	0	2	2	2	0	Zinc-finger	domain
Resolvase	PF00239.21	gi|296242510|ref|YP_003649997.1|	-	7.5e-25	87.7	0.3	1.2e-24	87.1	0.2	1.4	1	1	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|296242510|ref|YP_003649997.1|	-	7.2e-10	38.9	0.3	1.5e-09	37.9	0.3	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR	PF00376.23	gi|296242510|ref|YP_003649997.1|	-	0.00035	20.3	1.8	0.0004	20.1	0.2	2.0	2	0	0	2	2	2	1	MerR	family	regulatory	protein
MerR_1	PF13411.6	gi|296242510|ref|YP_003649997.1|	-	0.00047	20.2	0.2	0.00097	19.2	0.2	1.6	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR_2	PF13591.6	gi|296242510|ref|YP_003649997.1|	-	0.025	14.4	0.0	0.051	13.4	0.0	1.5	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
HTH_23	PF13384.6	gi|296242510|ref|YP_003649997.1|	-	0.044	13.6	0.0	0.15	11.9	0.0	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_28	PF13518.6	gi|296242510|ref|YP_003649997.1|	-	0.055	13.6	0.0	0.15	12.2	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.20	gi|296242510|ref|YP_003649997.1|	-	0.096	13.0	0.0	0.23	11.8	0.0	1.7	1	0	0	1	1	1	0	Transposase
OrfB_Zn_ribbon	PF07282.11	gi|296242511|ref|YP_003649998.1|	-	4.9e-20	71.2	0.1	9e-20	70.4	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Met_asp_mut_E	PF06368.11	gi|296242511|ref|YP_003649998.1|	-	0.029	12.9	0.0	0.054	12.0	0.0	1.3	1	0	0	1	1	1	0	Methylaspartate	mutase	E	chain	(MutE)
DNA_ligase_ZBD	PF03119.16	gi|296242511|ref|YP_003649998.1|	-	0.044	13.8	1.5	1	9.4	0.1	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Vps39_2	PF10367.9	gi|296242511|ref|YP_003649998.1|	-	0.13	12.7	0.6	0.42	11.1	0.2	2.1	1	1	0	1	1	1	0	Vacuolar	sorting	protein	39	domain	2
Mu-like_Com	PF10122.9	gi|296242511|ref|YP_003649998.1|	-	0.25	10.8	2.9	0.3	10.6	1.4	1.9	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
Zn_Tnp_IS1595	PF12760.7	gi|296242511|ref|YP_003649998.1|	-	0.34	10.9	2.7	0.76	9.8	2.7	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|296242511|ref|YP_003649998.1|	-	0.35	10.3	3.0	1.6	8.3	3.0	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF678	PF05077.12	gi|296242511|ref|YP_003649998.1|	-	0.57	10.3	4.6	0.16	12.1	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF678)
Zn-ribbon_8	PF09723.10	gi|296242511|ref|YP_003649998.1|	-	0.71	10.0	3.8	11	6.2	0.2	2.7	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|296242511|ref|YP_003649998.1|	-	1.1	9.6	4.7	1.1	9.6	0.4	2.4	1	1	1	2	2	2	0	zinc-ribbon
HNH	PF01844.23	gi|296242512|ref|YP_003649999.1|	-	0.02	15.0	0.7	0.063	13.5	0.7	1.8	1	1	0	1	1	1	0	HNH	endonuclease
YhfH	PF14149.6	gi|296242512|ref|YP_003649999.1|	-	0.055	13.5	0.0	0.12	12.4	0.0	1.6	1	0	0	1	1	1	0	YhfH-like	protein
RecO_C	PF02565.15	gi|296242512|ref|YP_003649999.1|	-	0.077	12.8	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Recombination	protein	O	C	terminal
Synaptonemal_3	PF15191.6	gi|296242512|ref|YP_003649999.1|	-	0.17	11.7	0.1	7.3	6.4	0.0	2.6	3	0	0	3	3	3	0	Synaptonemal	complex	central	element	protein	3
HK	PF02110.15	gi|296242513|ref|YP_003650000.1|	-	1.8e-73	247.0	0.1	2e-73	246.8	0.1	1.0	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.12	gi|296242513|ref|YP_003650000.1|	-	2.3e-07	30.5	0.1	3.1e-07	30.0	0.1	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
NikR_C	PF08753.11	gi|296242513|ref|YP_003650000.1|	-	0.051	13.7	0.1	0.53	10.5	0.0	2.4	2	0	0	2	2	2	0	NikR	C	terminal	nickel	binding	domain
TMP-TENI	PF02581.17	gi|296242514|ref|YP_003650001.1|	-	3.8e-59	199.1	0.1	4.8e-59	198.7	0.1	1.1	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase
NMO	PF03060.15	gi|296242514|ref|YP_003650001.1|	-	7.6e-06	25.5	1.0	1.1e-05	25.1	1.0	1.2	1	0	0	1	1	1	1	Nitronate	monooxygenase
NanE	PF04131.14	gi|296242514|ref|YP_003650001.1|	-	0.00052	19.3	0.1	0.00088	18.5	0.1	1.4	1	0	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
DUF561	PF04481.12	gi|296242514|ref|YP_003650001.1|	-	0.0045	16.2	1.9	0.071	12.3	1.3	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF561)
ThiG	PF05690.14	gi|296242514|ref|YP_003650001.1|	-	0.0062	15.9	3.6	0.0073	15.6	3.3	1.4	1	1	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
QRPTase_C	PF01729.19	gi|296242514|ref|YP_003650001.1|	-	0.02	14.7	0.1	0.076	12.8	0.0	1.9	2	1	0	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
FlpD	PF02662.16	gi|296242514|ref|YP_003650001.1|	-	0.093	12.7	0.2	0.24	11.4	0.0	1.8	2	0	0	2	2	2	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
His_biosynth	PF00977.21	gi|296242514|ref|YP_003650001.1|	-	0.099	12.1	0.7	0.29	10.6	0.6	1.7	1	1	0	1	1	1	0	Histidine	biosynthesis	protein
Phos_pyr_kin	PF08543.12	gi|296242515|ref|YP_003650002.1|	-	1.5e-90	302.9	0.9	1.7e-90	302.7	0.9	1.0	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
PfkB	PF00294.24	gi|296242515|ref|YP_003650002.1|	-	6.7e-09	35.5	1.0	1.9e-08	34.0	1.0	1.6	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Carb_kinase	PF01256.17	gi|296242515|ref|YP_003650002.1|	-	0.11	11.9	1.4	0.16	11.4	1.4	1.4	1	1	0	1	1	1	0	Carbohydrate	kinase
Pribosyltran	PF00156.27	gi|296242517|ref|YP_003650004.1|	-	2.4e-25	88.9	0.0	3.2e-25	88.5	0.0	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|296242517|ref|YP_003650004.1|	-	0.0016	17.9	0.0	0.0022	17.5	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
GMP_synt_C	PF00958.22	gi|296242518|ref|YP_003650005.1|	-	1.3e-28	98.9	0.2	2.9e-28	97.8	0.2	1.6	1	0	0	1	1	1	1	GMP	synthase	C	terminal	domain
GATase	PF00117.28	gi|296242518|ref|YP_003650005.1|	-	9.2e-28	97.3	0.0	1.4e-27	96.7	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|296242518|ref|YP_003650005.1|	-	2.4e-10	40.5	0.3	1.9e-09	37.6	0.3	2.4	1	1	0	1	1	1	1	Peptidase	C26
NAD_synthase	PF02540.17	gi|296242518|ref|YP_003650005.1|	-	9.6e-08	31.4	0.1	0.00094	18.4	0.0	2.2	2	0	0	2	2	2	2	NAD	synthase
ATP_bind_3	PF01171.20	gi|296242518|ref|YP_003650005.1|	-	0.0011	18.8	0.0	0.0028	17.4	0.0	1.7	2	1	0	2	2	2	1	PP-loop	family
ThiI	PF02568.14	gi|296242518|ref|YP_003650005.1|	-	0.0091	15.6	0.0	0.031	13.9	0.0	1.8	2	0	0	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
QueC	PF06508.13	gi|296242518|ref|YP_003650005.1|	-	0.02	14.4	0.0	0.098	12.1	0.0	1.9	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|296242518|ref|YP_003650005.1|	-	0.023	13.5	0.5	0.14	10.9	0.4	1.9	2	0	0	2	2	2	0	tRNA	methyl	transferase
Arginosuc_synth	PF00764.19	gi|296242518|ref|YP_003650005.1|	-	0.024	13.9	0.0	0.038	13.3	0.0	1.2	1	0	0	1	1	1	0	Arginosuccinate	synthase
Radical_SAM	PF04055.21	gi|296242519|ref|YP_003650006.1|	-	1.3e-07	32.1	0.0	3e-07	31.0	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Radical_SAM	PF04055.21	gi|296242520|ref|YP_003650007.1|	-	8.4e-11	42.5	0.0	1.9e-10	41.4	0.0	1.5	2	0	0	2	2	2	1	Radical	SAM	superfamily
BPL_LplA_LipB	PF03099.19	gi|296242521|ref|YP_003650008.1|	-	5.7e-15	55.4	0.0	1.1e-14	54.5	0.0	1.4	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Lip_prot_lig_C	PF10437.9	gi|296242522|ref|YP_003650009.1|	-	0.00051	20.0	0.1	0.0007	19.5	0.1	1.3	1	1	0	1	1	1	1	Bacterial	lipoate	protein	ligase	C-terminus
TP6A_N	PF04406.14	gi|296242524|ref|YP_003650011.1|	-	1.7e-21	75.9	0.2	2.9e-21	75.2	0.2	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
DUF2399	PF09664.10	gi|296242524|ref|YP_003650011.1|	-	0.052	13.5	0.0	0.096	12.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	C-terminus	(DUF2399)
Topo-VIb_trans	PF09239.11	gi|296242525|ref|YP_003650012.1|	-	2e-62	209.7	0.0	4.5e-62	208.6	0.0	1.6	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c	PF02518.26	gi|296242525|ref|YP_003650012.1|	-	1.9e-11	44.5	0.0	3.8e-11	43.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.6	gi|296242525|ref|YP_003650012.1|	-	2.5e-10	40.3	0.0	4.3e-10	39.5	0.0	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FbpA	PF05833.11	gi|296242525|ref|YP_003650012.1|	-	8.6e-07	28.1	0.0	1.9e-06	26.9	0.0	1.5	1	1	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
H2TH	PF06831.14	gi|296242525|ref|YP_003650012.1|	-	0.0043	17.0	0.0	0.012	15.6	0.0	1.7	1	0	0	1	1	1	1	Formamidopyrimidine-DNA	glycosylase	H2TH	domain
Ribosomal_S13	PF00416.22	gi|296242525|ref|YP_003650012.1|	-	0.0055	17.1	0.0	0.018	15.5	0.0	1.8	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
CstA	PF02554.14	gi|296242527|ref|YP_003650014.1|	-	7.2e-101	337.8	27.1	7.2e-101	337.8	27.1	2.1	2	0	0	2	2	2	1	Carbon	starvation	protein	CstA
CstA_5TM	PF13722.6	gi|296242527|ref|YP_003650014.1|	-	4e-27	94.9	8.3	4e-27	94.9	8.3	3.9	3	1	0	3	3	3	1	5TM	C-terminal	transporter	carbon	starvation	CstA
ArsA_ATPase	PF02374.15	gi|296242529|ref|YP_003650016.1|	-	1.7e-47	162.1	0.0	2e-47	161.8	0.0	1.1	1	0	0	1	1	1	1	Anion-transporting	ATPase
AAA_31	PF13614.6	gi|296242529|ref|YP_003650016.1|	-	1.6e-11	44.5	0.0	2.5e-11	43.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|296242529|ref|YP_003650016.1|	-	2.5e-08	34.0	0.0	3e-08	33.8	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|296242529|ref|YP_003650016.1|	-	2.2e-06	27.3	1.4	0.00035	20.1	0.4	3.0	3	0	0	3	3	3	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|296242529|ref|YP_003650016.1|	-	0.0013	18.0	0.4	0.02	14.2	0.2	2.2	1	1	1	2	2	2	1	ATPase	MipZ
AAA_24	PF13479.6	gi|296242529|ref|YP_003650016.1|	-	0.0029	17.4	0.5	0.12	12.1	0.3	3.2	3	1	0	3	3	3	1	AAA	domain
IstB_IS21	PF01695.17	gi|296242529|ref|YP_003650016.1|	-	0.0067	16.2	1.3	3.2	7.5	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
kleA_kleC	PF17383.2	gi|296242529|ref|YP_003650016.1|	-	0.0093	16.3	0.1	0.02	15.2	0.1	1.5	1	0	0	1	1	1	1	Uncharacterized	KorC	regulated	protein	A
AAA_25	PF13481.6	gi|296242529|ref|YP_003650016.1|	-	0.013	15.1	1.2	0.03	13.9	1.2	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|296242529|ref|YP_003650016.1|	-	0.013	15.9	0.0	0.025	15.0	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
CBP_BcsQ	PF06564.12	gi|296242529|ref|YP_003650016.1|	-	0.029	13.9	0.0	0.045	13.2	0.0	1.2	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
AAA_18	PF13238.6	gi|296242529|ref|YP_003650016.1|	-	0.049	14.2	0.0	0.088	13.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|296242529|ref|YP_003650016.1|	-	0.06	13.1	0.0	0.16	11.8	0.0	1.8	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
Fer4_NifH	PF00142.18	gi|296242529|ref|YP_003650016.1|	-	0.068	12.6	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Pox_A32	PF04665.12	gi|296242529|ref|YP_003650016.1|	-	0.09	12.2	0.0	0.21	11.0	0.0	1.6	1	0	0	1	1	1	0	Poxvirus	A32	protein
AAA_33	PF13671.6	gi|296242529|ref|YP_003650016.1|	-	0.15	12.2	0.0	0.57	10.3	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|296242529|ref|YP_003650016.1|	-	0.15	11.3	0.0	0.25	10.6	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
2-Hacid_dh_C	PF02826.19	gi|296242531|ref|YP_003650018.1|	-	2.6e-61	206.1	0.0	5.3e-61	205.1	0.0	1.5	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|296242531|ref|YP_003650018.1|	-	8.6e-24	83.7	0.0	9.8e-24	83.5	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|296242531|ref|YP_003650018.1|	-	6.7e-07	29.6	0.0	1.6e-06	28.4	0.0	1.6	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_7	PF13241.6	gi|296242531|ref|YP_003650018.1|	-	1.9e-05	25.1	0.0	7.3e-05	23.2	0.0	1.8	2	0	0	2	2	2	1	Putative	NAD(P)-binding
IlvN	PF07991.12	gi|296242531|ref|YP_003650018.1|	-	0.00035	20.2	0.0	0.0023	17.5	0.0	2.0	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AdoHcyase_NAD	PF00670.21	gi|296242531|ref|YP_003650018.1|	-	0.00086	19.4	0.0	0.0015	18.6	0.0	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|296242531|ref|YP_003650018.1|	-	0.0014	18.0	0.0	0.0037	16.6	0.0	1.7	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
F420_oxidored	PF03807.17	gi|296242531|ref|YP_003650018.1|	-	0.0018	18.8	0.1	0.0055	17.3	0.0	2.0	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.18	gi|296242531|ref|YP_003650018.1|	-	0.055	13.4	0.0	0.14	12.0	0.0	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|296242531|ref|YP_003650018.1|	-	0.06	13.6	0.0	0.22	11.8	0.0	2.0	2	0	0	2	2	2	0	TrkA-N	domain
XdhC_C	PF13478.6	gi|296242531|ref|YP_003650018.1|	-	0.068	13.7	0.0	0.13	12.8	0.0	1.5	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Shikimate_DH	PF01488.20	gi|296242531|ref|YP_003650018.1|	-	0.081	13.0	0.0	0.15	12.1	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|296242531|ref|YP_003650018.1|	-	0.089	12.8	0.1	0.24	11.4	0.0	1.9	2	1	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
T2SSE	PF00437.20	gi|296242533|ref|YP_003650020.1|	-	2.4e-39	135.0	0.0	3.5e-39	134.5	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|296242533|ref|YP_003650020.1|	-	0.00042	20.0	0.0	0.00084	19.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|296242533|ref|YP_003650020.1|	-	0.0015	18.9	0.0	0.0027	18.1	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
cobW	PF02492.19	gi|296242533|ref|YP_003650020.1|	-	0.0023	17.6	0.0	0.0041	16.7	0.0	1.3	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
ABC_tran	PF00005.27	gi|296242533|ref|YP_003650020.1|	-	0.0023	18.4	0.0	0.0048	17.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.6	gi|296242533|ref|YP_003650020.1|	-	0.0061	16.8	0.0	0.014	15.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|296242533|ref|YP_003650020.1|	-	0.0066	15.7	0.0	0.01	15.1	0.0	1.2	1	0	0	1	1	1	1	Zeta	toxin
AAA_18	PF13238.6	gi|296242533|ref|YP_003650020.1|	-	0.0094	16.5	0.0	0.02	15.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
TsaE	PF02367.17	gi|296242533|ref|YP_003650020.1|	-	0.045	13.7	0.0	0.081	12.9	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_23	PF13476.6	gi|296242533|ref|YP_003650020.1|	-	0.067	13.7	0.1	0.11	13.0	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_21	PF13304.6	gi|296242533|ref|YP_003650020.1|	-	0.1	12.4	0.0	0.18	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Mg_chelatase	PF01078.21	gi|296242533|ref|YP_003650020.1|	-	0.1	12.0	0.1	0.24	10.7	0.0	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|296242533|ref|YP_003650020.1|	-	0.1	12.3	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|296242533|ref|YP_003650020.1|	-	0.11	12.4	0.1	0.26	11.2	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
TrwB_AAD_bind	PF10412.9	gi|296242533|ref|YP_003650020.1|	-	0.18	10.7	0.0	0.28	10.1	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
RtcB	PF01139.17	gi|296242535|ref|YP_003650022.1|	-	7.7e-167	555.6	0.0	8.7e-167	555.5	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
CRISPR_Cas6	PF10040.9	gi|296242536|ref|YP_003650023.1|	-	2.1e-07	31.5	0.1	3.9e-07	30.6	0.1	1.5	1	0	0	1	1	1	1	CRISPR-associated	endoribonuclease	Cas6
HD_6	PF18019.1	gi|296242537|ref|YP_003650024.1|	-	6.1e-10	39.5	0.5	1.1e-09	38.8	0.5	1.4	1	1	0	1	1	1	1	HD	domain
HD	PF01966.22	gi|296242537|ref|YP_003650024.1|	-	0.00028	21.1	1.3	0.00067	19.9	1.1	1.6	1	1	0	1	1	1	1	HD	domain
DEAD	PF00270.29	gi|296242538|ref|YP_003650025.1|	-	8.3e-09	35.4	0.7	1.2e-07	31.6	0.2	2.8	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|296242538|ref|YP_003650025.1|	-	1.9e-07	31.4	0.1	3.9e-07	30.4	0.1	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|296242538|ref|YP_003650025.1|	-	3.9e-05	23.7	0.0	0.00012	22.1	0.0	1.8	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
TPP_enzyme_N	PF02776.18	gi|296242538|ref|YP_003650025.1|	-	0.032	13.8	0.1	0.063	12.9	0.1	1.4	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
DUF1707	PF08044.11	gi|296242538|ref|YP_003650025.1|	-	0.069	13.2	0.2	0.19	11.8	0.2	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1707)
PMT2_N	PF17987.1	gi|296242538|ref|YP_003650025.1|	-	0.13	12.5	0.0	0.34	11.1	0.0	1.7	1	0	0	1	1	1	0	Phosphoethanolamine	N-methyltransferase	2	N-terminal
Cas_Cas5d	PF09704.10	gi|296242540|ref|YP_003650027.1|	-	0.056	13.3	0.0	0.2	11.5	0.0	1.7	2	0	0	2	2	2	0	CRISPR-associated	protein	(Cas_Cas5)
DevR	PF01905.16	gi|296242541|ref|YP_003650028.1|	-	3.4e-67	226.3	0.1	4.4e-67	226.0	0.1	1.1	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
Cas_Csa5	PF09702.10	gi|296242542|ref|YP_003650029.1|	-	0.00071	19.8	0.0	0.00087	19.5	0.0	1.3	1	1	0	1	1	1	1	CRISPR-associated	protein	(Cas_Csa5)
HTH_24	PF13412.6	gi|296242543|ref|YP_003650030.1|	-	6.4e-09	35.2	0.2	3.1e-08	33.1	0.1	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|296242543|ref|YP_003650030.1|	-	3e-06	26.9	0.3	6.2e-06	25.9	0.1	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|296242543|ref|YP_003650030.1|	-	4.2e-05	23.3	0.8	0.00011	22.0	0.8	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|296242543|ref|YP_003650030.1|	-	7.2e-05	22.6	0.2	0.00021	21.1	0.1	1.9	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|296242543|ref|YP_003650030.1|	-	0.00012	21.9	0.1	0.0024	17.7	0.0	2.5	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|296242543|ref|YP_003650030.1|	-	0.0012	18.7	0.0	0.015	15.1	0.0	2.5	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|296242543|ref|YP_003650030.1|	-	0.0012	18.8	0.2	0.0046	17.0	0.2	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|296242543|ref|YP_003650030.1|	-	0.0018	18.2	0.1	0.018	15.0	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.6	gi|296242543|ref|YP_003650030.1|	-	0.0019	18.7	0.1	0.0075	16.7	0.1	2.0	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
RP-C	PF03428.13	gi|296242543|ref|YP_003650030.1|	-	0.0082	15.8	0.1	0.051	13.2	0.1	2.2	2	1	0	2	2	2	1	Replication	protein	C	N-terminal	domain
HTH_10	PF04967.12	gi|296242543|ref|YP_003650030.1|	-	0.014	15.2	0.0	0.03	14.1	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|296242543|ref|YP_003650030.1|	-	0.02	14.4	0.5	0.04	13.4	0.5	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|296242543|ref|YP_003650030.1|	-	0.02	14.9	0.1	0.042	13.8	0.1	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|296242543|ref|YP_003650030.1|	-	0.051	13.4	0.1	1.9	8.4	0.0	2.4	2	0	0	2	2	2	0	Homeodomain-like	domain
LexA_DNA_bind	PF01726.16	gi|296242543|ref|YP_003650030.1|	-	0.062	13.1	0.0	0.51	10.2	0.0	2.2	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_36	PF13730.6	gi|296242543|ref|YP_003650030.1|	-	0.094	12.7	0.1	0.5	10.4	0.0	2.3	3	0	0	3	3	2	0	Helix-turn-helix	domain
DUF2089	PF09862.9	gi|296242543|ref|YP_003650030.1|	-	0.11	12.5	0.0	0.24	11.5	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2089)
MarR_2	PF12802.7	gi|296242544|ref|YP_003650031.1|	-	1.8e-06	27.7	0.3	4.5e-06	26.5	0.1	1.8	2	0	0	2	2	1	1	MarR	family
TrmB	PF01978.19	gi|296242544|ref|YP_003650031.1|	-	5.5e-06	26.2	0.1	9.1e-06	25.5	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|296242544|ref|YP_003650031.1|	-	4.2e-05	23.0	0.1	7e-05	22.3	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|296242544|ref|YP_003650031.1|	-	0.0002	21.0	0.0	0.00052	19.7	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_20	PF12840.7	gi|296242544|ref|YP_003650031.1|	-	0.0002	21.3	0.1	0.00044	20.3	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|296242544|ref|YP_003650031.1|	-	0.00032	20.3	0.1	0.00054	19.6	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|296242544|ref|YP_003650031.1|	-	0.00034	20.3	0.5	0.00064	19.4	0.1	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|296242544|ref|YP_003650031.1|	-	0.00039	19.9	0.0	0.00067	19.1	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HrcA_DNA-bdg	PF03444.15	gi|296242544|ref|YP_003650031.1|	-	0.00068	19.2	0.0	0.0018	17.9	0.0	1.7	2	0	0	2	2	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_36	PF13730.6	gi|296242544|ref|YP_003650031.1|	-	0.00075	19.4	0.0	0.0013	18.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|296242544|ref|YP_003650031.1|	-	0.00081	19.2	0.6	0.0013	18.6	0.1	1.6	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.19	gi|296242544|ref|YP_003650031.1|	-	0.0011	18.4	0.2	0.0019	17.7	0.2	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_29	PF13551.6	gi|296242544|ref|YP_003650031.1|	-	0.0018	18.3	0.0	0.0031	17.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_IclR	PF09339.10	gi|296242544|ref|YP_003650031.1|	-	0.0024	17.7	0.0	0.0051	16.6	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|296242544|ref|YP_003650031.1|	-	0.0035	17.8	0.1	0.006	17.1	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|296242544|ref|YP_003650031.1|	-	0.0038	17.5	0.1	0.0097	16.2	0.1	1.8	1	1	0	1	1	1	1	Transcriptional	regulator
HTH_Tnp_ISL3	PF13542.6	gi|296242544|ref|YP_003650031.1|	-	0.0043	16.4	0.0	0.009	15.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF746	PF05344.11	gi|296242544|ref|YP_003650031.1|	-	0.0073	16.1	0.0	0.018	14.9	0.0	1.7	1	0	0	1	1	1	1	Domain	of	Unknown	Function	(DUF746)
HTH_17	PF12728.7	gi|296242544|ref|YP_003650031.1|	-	0.01	16.0	0.1	0.017	15.3	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF505	PF04458.12	gi|296242544|ref|YP_003650031.1|	-	0.012	14.0	0.0	0.017	13.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
SMC_ScpB	PF04079.16	gi|296242544|ref|YP_003650031.1|	-	0.016	14.8	0.0	0.03	13.9	0.0	1.4	1	0	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_Crp_2	PF13545.6	gi|296242544|ref|YP_003650031.1|	-	0.025	14.5	0.2	0.049	13.6	0.2	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
NUMOD1	PF07453.13	gi|296242544|ref|YP_003650031.1|	-	0.027	14.7	0.1	0.055	13.7	0.1	1.6	1	0	0	1	1	1	0	NUMOD1	domain
HemN_C	PF06969.16	gi|296242544|ref|YP_003650031.1|	-	0.028	14.5	0.0	0.053	13.6	0.0	1.5	1	0	0	1	1	1	0	HemN	C-terminal	domain
HTH_11	PF08279.12	gi|296242544|ref|YP_003650031.1|	-	0.032	14.2	0.1	0.061	13.3	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
RPA_C	PF08784.11	gi|296242544|ref|YP_003650031.1|	-	0.054	14.2	0.0	0.085	13.5	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
FeoC	PF09012.10	gi|296242544|ref|YP_003650031.1|	-	0.055	13.5	0.0	0.094	12.8	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
RuvB_C	PF05491.13	gi|296242544|ref|YP_003650031.1|	-	0.063	13.2	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
GntR	PF00392.21	gi|296242544|ref|YP_003650031.1|	-	0.11	12.2	0.2	0.22	11.2	0.2	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.19	gi|296242544|ref|YP_003650031.1|	-	0.11	12.7	0.1	0.24	11.6	0.1	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Penicillinase_R	PF03965.16	gi|296242544|ref|YP_003650031.1|	-	0.13	12.6	0.0	0.21	11.9	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_AsnC-type	PF13404.6	gi|296242544|ref|YP_003650031.1|	-	0.15	11.9	0.1	0.32	10.9	0.1	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Peripla_BP_6	PF13458.6	gi|296242544|ref|YP_003650031.1|	-	0.15	11.7	0.0	0.23	11.1	0.0	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein
HTH_28	PF13518.6	gi|296242544|ref|YP_003650031.1|	-	0.16	12.1	0.0	0.37	11.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|296242544|ref|YP_003650031.1|	-	0.17	11.6	0.0	0.25	11.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Cas_Cas4	PF01930.17	gi|296242545|ref|YP_003650032.1|	-	0.00037	20.7	0.0	0.00042	20.5	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
CRISPR_Cas2	PF09827.9	gi|296242546|ref|YP_003650033.1|	-	2.6e-14	53.2	0.0	3.2e-14	52.8	0.0	1.2	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas1	PF01867.16	gi|296242547|ref|YP_003650034.1|	-	4.2e-63	213.1	0.0	5.2e-63	212.8	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Csa1	PF06023.12	gi|296242548|ref|YP_003650035.1|	-	9.2e-65	218.9	0.0	1.2e-64	218.5	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	exonuclease	Csa1
PDDEXK_1	PF12705.7	gi|296242548|ref|YP_003650035.1|	-	1.6e-05	24.9	0.0	3.1e-05	24.0	0.0	1.4	1	1	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.17	gi|296242548|ref|YP_003650035.1|	-	0.0054	16.9	0.0	0.12	12.5	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF83
Metallophos	PF00149.28	gi|296242550|ref|YP_003650037.1|	-	4.6e-11	43.6	0.0	1.2e-10	42.2	0.0	1.7	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|296242550|ref|YP_003650037.1|	-	1.3e-10	41.7	0.0	3e-10	40.5	0.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
AAA_23	PF13476.6	gi|296242551|ref|YP_003650038.1|	-	1e-20	75.1	12.6	1e-20	75.1	12.6	6.9	1	1	1	2	2	1	1	AAA	domain
SMC_N	PF02463.19	gi|296242551|ref|YP_003650038.1|	-	7.5e-20	71.3	13.8	2.3e-19	69.7	13.8	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|296242551|ref|YP_003650038.1|	-	8.1e-18	65.3	16.5	1.9e-13	50.9	1.0	3.9	1	1	2	3	3	2	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|296242551|ref|YP_003650038.1|	-	3.3e-14	53.4	8.1	5.6e-06	26.4	1.0	3.9	3	1	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|296242551|ref|YP_003650038.1|	-	6.2e-11	41.7	64.4	1.6e-06	27.1	26.0	5.0	2	1	1	3	3	3	2	AAA	domain
Spc7	PF08317.11	gi|296242551|ref|YP_003650038.1|	-	1.5e-07	30.6	107.1	0.0096	14.8	19.7	5.9	2	2	4	6	6	6	5	Spc7	kinetochore	protein
Baculo_PEP_C	PF04513.12	gi|296242551|ref|YP_003650038.1|	-	3.3e-07	30.4	17.4	0.32	11.0	0.1	6.3	2	2	3	6	6	6	3	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
SbcCD_C	PF13558.6	gi|296242551|ref|YP_003650038.1|	-	4.7e-07	30.0	0.0	2.1e-06	27.9	0.0	2.1	2	0	0	2	2	1	1	Putative	exonuclease	SbcCD,	C	subunit
Rad50_zn_hook	PF04423.14	gi|296242551|ref|YP_003650038.1|	-	1.3e-06	28.1	3.2	1.3e-06	28.1	3.2	10.0	13	1	0	13	13	8	1	Rad50	zinc	hook	motif
MscS_porin	PF12795.7	gi|296242551|ref|YP_003650038.1|	-	2.8e-06	27.1	90.2	0.022	14.3	20.2	5.1	2	2	3	5	5	5	4	Mechanosensitive	ion	channel	porin	domain
GAS	PF13851.6	gi|296242551|ref|YP_003650038.1|	-	6.2e-06	25.7	103.8	0.00014	21.3	13.0	6.7	1	1	5	6	6	6	3	Growth-arrest	specific	micro-tubule	binding
AAA_29	PF13555.6	gi|296242551|ref|YP_003650038.1|	-	1.8e-05	24.4	0.0	4.2e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF4795	PF16043.5	gi|296242551|ref|YP_003650038.1|	-	5.8e-05	22.8	9.1	5.8e-05	22.8	9.1	5.7	1	1	3	4	4	4	1	Domain	of	unknown	function	(DUF4795)
FlaC_arch	PF05377.11	gi|296242551|ref|YP_003650038.1|	-	0.00025	21.4	68.1	0.42	11.0	0.6	11.9	9	2	2	11	11	11	3	Flagella	accessory	protein	C	(FlaC)
ABC_tran	PF00005.27	gi|296242551|ref|YP_003650038.1|	-	0.00027	21.5	17.1	0.00061	20.3	0.0	5.4	2	1	0	2	2	1	1	ABC	transporter
DUF1664	PF07889.12	gi|296242551|ref|YP_003650038.1|	-	0.00047	20.2	48.2	0.068	13.2	0.6	7.1	4	2	2	7	7	7	4	Protein	of	unknown	function	(DUF1664)
Atg14	PF10186.9	gi|296242551|ref|YP_003650038.1|	-	0.00052	19.2	14.2	0.00052	19.2	14.2	4.9	1	1	4	5	5	4	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
NPV_P10	PF05531.12	gi|296242551|ref|YP_003650038.1|	-	0.00056	20.3	18.6	16	6.0	0.1	8.4	4	3	3	7	7	7	0	Nucleopolyhedrovirus	P10	protein
Filament	PF00038.21	gi|296242551|ref|YP_003650038.1|	-	0.0023	17.6	12.9	0.0023	17.6	12.9	4.8	1	1	3	4	4	4	1	Intermediate	filament	protein
Phytochelatin	PF05023.14	gi|296242551|ref|YP_003650038.1|	-	0.01	15.1	0.2	0.01	15.1	0.2	2.5	3	0	0	3	3	3	0	Phytochelatin	synthase
APG6_N	PF17675.1	gi|296242551|ref|YP_003650038.1|	-	0.011	16.3	11.6	0.011	16.3	11.6	8.4	2	2	5	8	8	7	0	Apg6	coiled-coil	region
ABC_tran_CTD	PF16326.5	gi|296242551|ref|YP_003650038.1|	-	0.012	15.8	10.5	0.012	15.8	10.5	10.9	3	2	8	11	11	9	0	ABC	transporter	C-terminal	domain
CENP-F_leu_zip	PF10473.9	gi|296242551|ref|YP_003650038.1|	-	0.013	15.5	117.7	0.42	10.6	29.9	7.1	2	2	5	7	7	7	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
WXG100	PF06013.12	gi|296242551|ref|YP_003650038.1|	-	0.026	14.7	26.6	0.037	14.3	0.4	7.6	6	2	2	8	8	8	0	Proteins	of	100	residues	with	WXG
WSN	PF02206.18	gi|296242551|ref|YP_003650038.1|	-	0.08	12.9	0.2	0.46	10.4	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function
HSBP1	PF06825.12	gi|296242551|ref|YP_003650038.1|	-	0.095	12.6	9.1	15	5.5	0.0	6.1	5	1	1	6	6	5	0	Heat	shock	factor	binding	protein	1
Rootletin	PF15035.6	gi|296242551|ref|YP_003650038.1|	-	0.14	12.2	86.0	0.019	15.0	10.0	6.5	4	2	3	7	7	6	0	Ciliary	rootlet	component,	centrosome	cohesion
AAA_16	PF13191.6	gi|296242551|ref|YP_003650038.1|	-	0.14	12.5	0.0	0.14	12.5	0.0	5.7	2	1	1	3	3	2	0	AAA	ATPase	domain
Pinin_SDK_N	PF04697.13	gi|296242551|ref|YP_003650038.1|	-	0.16	12.6	14.0	1	10.0	0.6	4.5	3	2	0	3	3	3	0	pinin/SDK	conserved	region
IF3_N	PF05198.16	gi|296242551|ref|YP_003650038.1|	-	0.19	12.0	3.6	2.7	8.3	0.4	3.5	2	1	0	2	2	2	0	Translation	initiation	factor	IF-3,	N-terminal	domain
DUF948	PF06103.11	gi|296242551|ref|YP_003650038.1|	-	0.29	11.4	21.3	7.1	7.0	0.8	7.3	4	2	4	8	8	8	0	Bacterial	protein	of	unknown	function	(DUF948)
ATG_C	PF09333.11	gi|296242551|ref|YP_003650038.1|	-	0.34	11.3	3.7	7.2	7.0	0.0	3.7	3	1	1	4	4	2	0	Autophagy-related	protein	C	terminal	domain
RsgA_GTPase	PF03193.16	gi|296242551|ref|YP_003650038.1|	-	0.39	10.6	2.6	1.2	9.0	0.0	3.2	3	0	0	3	3	2	0	RsgA	GTPase
Myosin_tail_1	PF01576.19	gi|296242551|ref|YP_003650038.1|	-	0.41	8.4	104.9	0.046	11.5	39.5	2.6	1	1	1	2	2	2	0	Myosin	tail
Syntaxin-6_N	PF09177.11	gi|296242551|ref|YP_003650038.1|	-	0.44	11.1	66.2	0.031	14.8	6.2	7.8	2	2	5	7	7	7	0	Syntaxin	6,	N-terminal
EzrA	PF06160.12	gi|296242551|ref|YP_003650038.1|	-	0.52	8.4	75.0	0.013	13.7	11.2	5.5	2	2	2	5	5	5	0	Septation	ring	formation	regulator,	EzrA
MukB	PF04310.12	gi|296242551|ref|YP_003650038.1|	-	0.55	10.0	0.0	0.55	10.0	0.0	3.2	4	2	1	5	5	3	0	MukB	N-terminal
ATG16	PF08614.11	gi|296242551|ref|YP_003650038.1|	-	0.56	10.4	103.9	0.41	10.8	22.7	6.2	3	3	3	6	6	6	0	Autophagy	protein	16	(ATG16)
Laminin_II	PF06009.12	gi|296242551|ref|YP_003650038.1|	-	0.6	10.1	65.0	0.67	10.0	3.8	7.0	2	2	6	8	8	8	0	Laminin	Domain	II
TMP_2	PF06791.13	gi|296242551|ref|YP_003650038.1|	-	3.5	7.2	9.3	6.7	6.3	0.0	3.3	3	0	0	3	3	3	0	Prophage	tail	length	tape	measure	protein
Adhesin_P1_N	PF18652.1	gi|296242551|ref|YP_003650038.1|	-	4.6	7.3	11.5	1.5	8.9	0.1	4.7	5	0	0	5	5	3	0	Adhesin	P1	N-terminal	domain
GP3_package	PF16677.5	gi|296242551|ref|YP_003650038.1|	-	5	7.3	8.5	4.3	7.5	0.9	3.7	3	0	0	3	3	2	0	DNA-packaging	protein	gp3
ArAE_2	PF10334.9	gi|296242551|ref|YP_003650038.1|	-	5.4	6.8	7.2	0.57	10.0	0.2	2.8	3	1	1	4	4	3	0	Aromatic	acid	exporter	family	member	2
zf-C3HC	PF07967.13	gi|296242551|ref|YP_003650038.1|	-	8.1	6.5	7.5	34	4.5	0.2	3.7	3	0	0	3	3	2	0	C3HC	zinc	finger-like
Rab5-bind	PF09311.11	gi|296242551|ref|YP_003650038.1|	-	8.8	5.6	84.0	0.14	11.5	17.3	5.1	1	1	1	3	3	3	0	Rabaptin-like	protein
DUF812	PF05667.11	gi|296242551|ref|YP_003650038.1|	-	9.2	5.0	86.6	7.1	5.4	18.5	4.3	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF812)
Seryl_tRNA_N	PF02403.22	gi|296242551|ref|YP_003650038.1|	-	9.9	6.4	94.7	1.5	9.0	6.3	8.7	3	3	4	8	8	8	0	Seryl-tRNA	synthetase	N-terminal	domain
NurA	PF09376.10	gi|296242552|ref|YP_003650039.1|	-	1.2e-28	100.4	0.1	2.2e-28	99.6	0.1	1.4	1	1	0	1	1	1	1	NurA	domain
DUF87	PF01935.17	gi|296242553|ref|YP_003650040.1|	-	2.7e-44	152.0	0.5	3.8e-44	151.5	0.5	1.2	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|296242553|ref|YP_003650040.1|	-	1.5e-08	33.7	0.1	1.9e-06	26.8	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_10	PF12846.7	gi|296242553|ref|YP_003650040.1|	-	0.00069	18.6	0.0	1	8.2	0.1	2.3	2	0	0	2	2	2	2	AAA-like	domain
HAS-barrel	PF09378.10	gi|296242553|ref|YP_003650040.1|	-	0.0026	17.9	0.6	0.01	15.9	0.1	2.4	2	0	0	2	2	2	1	HAS	barrel	domain
Glyco_hydro_35	PF01301.19	gi|296242553|ref|YP_003650040.1|	-	0.051	13.2	0.0	0.08	12.5	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolases	family	35
DUF4413	PF14372.6	gi|296242553|ref|YP_003650040.1|	-	0.13	12.6	0.1	0.32	11.4	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4413)
tRNA-synt_His	PF13393.6	gi|296242554|ref|YP_003650041.1|	-	8.1e-50	169.8	0.0	1e-49	169.5	0.0	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.25	gi|296242554|ref|YP_003650041.1|	-	1.7e-10	41.2	0.0	2e-10	40.9	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|296242554|ref|YP_003650041.1|	-	5.5e-10	39.3	0.0	3.6e-09	36.6	0.0	2.2	3	0	0	3	3	3	1	Anticodon	binding	domain
tRNA-synt_2d	PF01409.20	gi|296242554|ref|YP_003650041.1|	-	0.001	18.6	0.0	0.0071	15.9	0.0	2.0	2	0	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.20	gi|296242554|ref|YP_003650041.1|	-	0.1	11.7	2.8	0.57	9.2	0.6	2.4	2	1	0	2	2	2	0	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_int_endo	PF01974.17	gi|296242555|ref|YP_003650042.1|	-	2.4e-09	37.1	0.1	3.9e-09	36.5	0.1	1.3	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|296242555|ref|YP_003650042.1|	-	9.8e-09	34.8	0.0	2.1e-08	33.7	0.0	1.5	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	N-terminal	domain
IF-2B	PF01008.17	gi|296242556|ref|YP_003650043.1|	-	1.9e-78	263.5	0.1	2.3e-78	263.3	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
Hydrolase	PF00702.26	gi|296242556|ref|YP_003650043.1|	-	0.016	15.5	0.2	0.036	14.3	0.2	1.5	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Nitroreductase	PF00881.24	gi|296242558|ref|YP_003650045.1|	-	1.6e-28	99.9	1.8	1.2e-16	61.2	0.4	2.1	1	1	1	2	2	2	2	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|296242558|ref|YP_003650045.1|	-	8.1e-09	35.4	0.0	5.6e-06	26.1	0.1	2.9	2	1	1	3	3	3	3	Putative	TM	nitroreductase
HTH_16	PF12645.7	gi|296242558|ref|YP_003650045.1|	-	0.1	12.6	0.0	12	6.0	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
SWIM	PF04434.17	gi|296242559|ref|YP_003650046.1|	-	0.006	16.2	1.2	0.017	14.8	1.2	1.8	1	1	0	1	1	1	1	SWIM	zinc	finger
Elf1	PF05129.13	gi|296242560|ref|YP_003650047.1|	-	6.9e-21	74.1	0.1	8.6e-21	73.8	0.1	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
TF_Zn_Ribbon	PF08271.12	gi|296242560|ref|YP_003650047.1|	-	2.2e-05	23.9	0.2	5.2e-05	22.7	0.2	1.6	1	1	0	1	1	1	1	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|296242560|ref|YP_003650047.1|	-	0.028	13.8	1.7	0.11	11.9	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DCAF15_WD40	PF14939.6	gi|296242560|ref|YP_003650047.1|	-	0.031	14.0	0.0	0.034	13.8	0.0	1.1	1	0	0	1	1	1	0	DDB1-and	CUL4-substrate	receptor	15,	WD	repeat
Ribosomal_L32p	PF01783.23	gi|296242560|ref|YP_003650047.1|	-	0.033	14.5	1.7	0.039	14.2	0.2	1.7	2	0	0	2	2	2	0	Ribosomal	L32p	protein	family
Lar_restr_allev	PF14354.6	gi|296242560|ref|YP_003650047.1|	-	0.036	14.4	0.2	0.092	13.1	0.2	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF1610	PF07754.11	gi|296242560|ref|YP_003650047.1|	-	0.041	13.8	1.7	0.041	13.8	1.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Zn_Tnp_IS1595	PF12760.7	gi|296242560|ref|YP_003650047.1|	-	0.2	11.7	1.9	0.8	9.7	1.9	1.9	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|296242560|ref|YP_003650047.1|	-	0.23	11.4	2.4	1.4	8.9	2.3	2.1	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|296242560|ref|YP_003650047.1|	-	0.31	11.7	4.4	1.6	9.4	0.1	2.7	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
PcrB	PF01884.17	gi|296242561|ref|YP_003650048.1|	-	1.8e-55	187.9	0.0	2.1e-55	187.6	0.0	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|296242561|ref|YP_003650048.1|	-	4.1e-07	29.7	0.0	5.6e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
NanE	PF04131.14	gi|296242561|ref|YP_003650048.1|	-	0.00012	21.4	0.5	0.00044	19.5	0.1	1.9	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
Trp_syntA	PF00290.20	gi|296242561|ref|YP_003650048.1|	-	0.00021	20.3	0.3	0.004	16.0	0.3	2.1	2	0	0	2	2	2	1	Tryptophan	synthase	alpha	chain
IMPDH	PF00478.25	gi|296242561|ref|YP_003650048.1|	-	0.0023	17.0	0.1	0.015	14.3	0.0	1.9	2	0	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
DHO_dh	PF01180.21	gi|296242561|ref|YP_003650048.1|	-	0.0078	15.5	0.1	0.011	14.9	0.1	1.2	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
NAD_binding_10	PF13460.6	gi|296242561|ref|YP_003650048.1|	-	0.018	14.9	0.0	2.1	8.2	0.0	2.3	2	0	0	2	2	2	0	NAD(P)H-binding
TMP-TENI	PF02581.17	gi|296242561|ref|YP_003650048.1|	-	0.018	14.4	0.1	0.063	12.6	0.0	1.7	2	0	0	2	2	2	0	Thiamine	monophosphate	synthase
PEP_hydrolase	PF09370.10	gi|296242561|ref|YP_003650048.1|	-	0.054	12.7	0.1	0.39	9.9	0.0	2.0	2	0	0	2	2	2	0	Phosphoenolpyruvate	hydrolase-like
Dus	PF01207.17	gi|296242561|ref|YP_003650048.1|	-	0.14	11.2	0.0	0.25	10.4	0.0	1.4	1	0	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
IGPS	PF00218.21	gi|296242561|ref|YP_003650048.1|	-	0.23	10.6	0.3	13	4.9	0.0	2.5	3	0	0	3	3	3	0	Indole-3-glycerol	phosphate	synthase
MazG	PF03819.17	gi|296242562|ref|YP_003650049.1|	-	1.2e-10	41.4	0.9	1.8e-10	40.8	0.9	1.2	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
PRA-PH	PF01503.17	gi|296242562|ref|YP_003650049.1|	-	0.0026	18.2	0.3	0.0031	17.9	0.3	1.2	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG-like	PF12643.7	gi|296242562|ref|YP_003650049.1|	-	0.0028	17.9	0.1	0.0045	17.2	0.1	1.3	1	0	0	1	1	1	1	MazG-like	family
DUF3052	PF11253.8	gi|296242562|ref|YP_003650049.1|	-	0.018	14.9	0.1	0.02	14.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3052)
HHH_7	PF14635.6	gi|296242562|ref|YP_003650049.1|	-	0.11	12.8	0.4	0.19	12.1	0.1	1.5	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
Sec61_beta	PF03911.16	gi|296242563|ref|YP_003650050.1|	-	1.1e-12	47.7	0.7	1.3e-12	47.5	0.7	1.1	1	0	0	1	1	1	1	Sec61beta	family
TPP_enzyme_C	PF02775.21	gi|296242564|ref|YP_003650051.1|	-	2.2e-23	82.7	0.6	3.4e-23	82.1	0.6	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|296242564|ref|YP_003650051.1|	-	8.4e-05	21.9	0.2	0.00012	21.4	0.2	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
Ribosomal_S11	PF00411.19	gi|296242564|ref|YP_003650051.1|	-	0.075	13.4	1.3	0.12	12.8	0.9	1.5	1	1	0	1	1	1	0	Ribosomal	protein	S11
POR_N	PF01855.19	gi|296242565|ref|YP_003650052.1|	-	9.8e-67	225.1	0.4	1.2e-66	224.7	0.4	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|296242565|ref|YP_003650052.1|	-	7.8e-25	87.2	0.0	1.7e-24	86.1	0.0	1.6	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|296242565|ref|YP_003650052.1|	-	1.6e-05	24.8	0.0	3.4e-05	23.7	0.0	1.5	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Fer4	PF00037.27	gi|296242566|ref|YP_003650053.1|	-	3.3e-14	52.0	15.4	5.8e-09	35.4	4.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|296242566|ref|YP_003650053.1|	-	3.7e-10	39.4	14.9	2.7e-05	24.0	4.0	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|296242566|ref|YP_003650053.1|	-	3.9e-10	39.7	9.5	5.8e-10	39.2	9.5	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|296242566|ref|YP_003650053.1|	-	1.5e-09	38.3	12.5	2.9e-09	37.4	12.7	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|296242566|ref|YP_003650053.1|	-	1.6e-09	37.7	22.4	3.5e-06	27.0	12.9	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|296242566|ref|YP_003650053.1|	-	2.7e-08	34.6	11.2	0.00014	22.7	2.9	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|296242566|ref|YP_003650053.1|	-	4.4e-08	33.2	10.5	6e-08	32.7	10.5	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|296242566|ref|YP_003650053.1|	-	8.5e-08	32.5	6.6	0.0019	18.6	0.8	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296242566|ref|YP_003650053.1|	-	9.3e-08	31.7	14.7	0.0004	20.3	2.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|296242566|ref|YP_003650053.1|	-	9.2e-06	26.1	5.1	0.023	15.2	0.3	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|296242566|ref|YP_003650053.1|	-	0.00036	20.8	15.4	0.016	15.7	3.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|296242566|ref|YP_003650053.1|	-	0.0026	18.6	19.7	0.066	14.2	7.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|296242566|ref|YP_003650053.1|	-	0.013	16.2	16.3	0.09	13.5	4.6	3.2	2	2	1	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|296242566|ref|YP_003650053.1|	-	0.038	14.5	13.2	0.17	12.4	2.4	2.4	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|296242566|ref|YP_003650053.1|	-	1.5	9.1	12.0	15	5.9	3.2	2.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|296242566|ref|YP_003650053.1|	-	1.6	9.7	14.0	0.47	11.3	2.7	2.1	1	1	2	3	3	2	0	4Fe-4S	dicluster	domain
POR	PF01558.18	gi|296242567|ref|YP_003650054.1|	-	8e-35	120.5	3.6	9.4e-35	120.3	3.6	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
STG	PF15809.5	gi|296242568|ref|YP_003650055.1|	-	0.96	9.5	2.5	1.4	9.0	2.5	1.2	1	0	0	1	1	1	0	Simian	taste	bud-specific	gene	product	family
PYC_OADA	PF02436.18	gi|296242571|ref|YP_003650058.1|	-	6e-54	182.8	0.0	1.1e-53	182.0	0.0	1.4	1	0	0	1	1	1	1	Conserved	carboxylase	domain
HMGL-like	PF00682.19	gi|296242571|ref|YP_003650058.1|	-	7.7e-39	133.8	0.0	9.8e-39	133.5	0.0	1.1	1	0	0	1	1	1	1	HMGL-like
TFIIE_beta	PF02186.15	gi|296242571|ref|YP_003650058.1|	-	0.062	13.6	0.3	0.47	10.8	0.1	2.6	2	0	0	2	2	2	0	TFIIE	beta	subunit	core	domain
PCNA_N	PF00705.18	gi|296242572|ref|YP_003650059.1|	-	8.5e-10	38.4	0.2	1.6e-09	37.5	0.2	1.4	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|296242572|ref|YP_003650059.1|	-	1.2e-08	35.2	0.2	6.5e-07	29.6	0.0	3.1	2	2	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Hus1	PF04005.12	gi|296242572|ref|YP_003650059.1|	-	0.00057	19.1	0.0	0.0012	18.0	0.0	1.5	2	0	0	2	2	2	1	Hus1-like	protein
DUF87	PF01935.17	gi|296242575|ref|YP_003650062.1|	-	2.4e-14	54.0	0.0	4.2e-14	53.2	0.0	1.3	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|296242575|ref|YP_003650062.1|	-	4.9e-08	32.3	0.0	3.3e-06	26.3	0.0	2.2	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|296242575|ref|YP_003650062.1|	-	1e-07	31.2	0.0	6.8e-05	21.9	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
DUF853	PF05872.12	gi|296242575|ref|YP_003650062.1|	-	2.5e-05	23.1	0.0	0.0001	21.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
AAA_22	PF13401.6	gi|296242575|ref|YP_003650062.1|	-	0.00013	22.2	0.1	0.0065	16.7	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
CbiA	PF01656.23	gi|296242575|ref|YP_003650062.1|	-	0.00091	19.3	0.1	0.002	18.2	0.1	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA	PF00004.29	gi|296242575|ref|YP_003650062.1|	-	0.0051	17.2	0.0	0.43	11.0	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TraG-D_C	PF12696.7	gi|296242575|ref|YP_003650062.1|	-	0.0057	16.6	0.0	0.013	15.4	0.0	1.6	1	1	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
Sigma54_activat	PF00158.26	gi|296242575|ref|YP_003650062.1|	-	0.011	15.5	0.0	0.018	14.7	0.0	1.2	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Pox_A32	PF04665.12	gi|296242575|ref|YP_003650062.1|	-	0.018	14.5	0.1	2.1	7.7	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	A32	protein
AAA_16	PF13191.6	gi|296242575|ref|YP_003650062.1|	-	0.032	14.6	0.0	0.093	13.1	0.0	1.7	1	0	0	1	1	1	0	AAA	ATPase	domain
Zeta_toxin	PF06414.12	gi|296242575|ref|YP_003650062.1|	-	0.037	13.3	0.0	0.059	12.7	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
RNA_helicase	PF00910.22	gi|296242575|ref|YP_003650062.1|	-	0.045	14.2	0.0	0.093	13.1	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
ATPase	PF06745.13	gi|296242575|ref|YP_003650062.1|	-	0.055	12.8	0.1	0.18	11.1	0.0	1.8	2	0	0	2	2	2	0	KaiC
MeaB	PF03308.16	gi|296242575|ref|YP_003650062.1|	-	0.058	12.4	0.1	0.093	11.7	0.1	1.2	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
MobB	PF03205.14	gi|296242575|ref|YP_003650062.1|	-	0.068	13.1	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_24	PF13479.6	gi|296242575|ref|YP_003650062.1|	-	0.073	12.8	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|296242575|ref|YP_003650062.1|	-	0.073	13.0	0.1	0.26	11.2	0.1	1.9	2	0	0	2	2	2	0	NACHT	domain
ABC_tran	PF00005.27	gi|296242575|ref|YP_003650062.1|	-	0.074	13.6	0.0	0.14	12.7	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
DUF2075	PF09848.9	gi|296242575|ref|YP_003650062.1|	-	0.083	12.1	0.0	0.11	11.7	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_18	PF13238.6	gi|296242575|ref|YP_003650062.1|	-	0.086	13.4	0.0	0.18	12.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|296242575|ref|YP_003650062.1|	-	0.11	12.0	0.0	0.18	11.3	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_28	PF13521.6	gi|296242575|ref|YP_003650062.1|	-	0.12	12.6	0.0	0.27	11.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF815	PF05673.13	gi|296242575|ref|YP_003650062.1|	-	0.12	11.5	0.0	0.19	10.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
T2SSE	PF00437.20	gi|296242575|ref|YP_003650062.1|	-	0.13	11.3	0.0	0.24	10.4	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
ATPase_2	PF01637.18	gi|296242575|ref|YP_003650062.1|	-	0.14	12.1	0.0	0.64	9.9	0.0	1.9	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
ParA	PF10609.9	gi|296242575|ref|YP_003650062.1|	-	0.16	11.4	0.0	0.28	10.6	0.0	1.3	1	0	0	1	1	1	0	NUBPL	iron-transfer	P-loop	NTPase
AAA_5	PF07728.14	gi|296242575|ref|YP_003650062.1|	-	0.17	11.9	0.0	0.31	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
PhoH	PF02562.16	gi|296242575|ref|YP_003650062.1|	-	0.18	11.3	0.0	0.61	9.5	0.0	1.7	2	0	0	2	2	2	0	PhoH-like	protein
IstB_IS21	PF01695.17	gi|296242575|ref|YP_003650062.1|	-	0.18	11.5	0.0	0.39	10.4	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_33	PF13671.6	gi|296242575|ref|YP_003650062.1|	-	0.2	11.8	0.0	0.38	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|296242575|ref|YP_003650062.1|	-	0.21	11.5	0.0	0.56	10.1	0.0	1.6	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_30	PF13604.6	gi|296242575|ref|YP_003650062.1|	-	0.25	11.0	0.1	0.55	9.9	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
DEAD	PF00270.29	gi|296242576|ref|YP_003650063.1|	-	1.3e-30	106.5	0.0	2.8e-28	98.9	0.0	2.6	1	1	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|296242576|ref|YP_003650063.1|	-	1.3e-22	80.2	0.1	6.3e-19	68.4	0.1	2.6	2	0	0	2	2	2	2	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|296242576|ref|YP_003650063.1|	-	4.7e-09	36.5	0.0	6.6e-08	32.7	0.0	2.6	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
DEAD_assoc	PF08494.11	gi|296242576|ref|YP_003650063.1|	-	1.1e-06	28.6	0.0	3e-06	27.2	0.0	1.7	1	1	0	1	1	1	1	DEAD/H	associated
AAA_19	PF13245.6	gi|296242576|ref|YP_003650063.1|	-	0.0035	17.7	0.0	0.011	16.0	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
UvrD-helicase	PF00580.21	gi|296242576|ref|YP_003650063.1|	-	0.028	14.0	0.0	0.096	12.2	0.0	1.9	1	1	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
HypA	PF01155.19	gi|296242576|ref|YP_003650063.1|	-	0.034	14.2	0.9	0.17	12.0	0.2	2.3	2	1	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_10	PF10058.9	gi|296242576|ref|YP_003650063.1|	-	0.056	13.2	0.4	0.12	12.1	0.4	1.6	1	0	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
AAA_22	PF13401.6	gi|296242576|ref|YP_003650063.1|	-	0.068	13.4	0.3	39	4.5	0.0	3.7	3	1	1	4	4	3	0	AAA	domain
AAA_11	PF13086.6	gi|296242576|ref|YP_003650063.1|	-	0.1	12.3	0.0	0.23	11.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
T4SS-DNA_transf	PF02534.14	gi|296242576|ref|YP_003650063.1|	-	0.15	10.9	0.0	0.23	10.2	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretory	system	Conjugative	DNA	transfer
DZR	PF12773.7	gi|296242576|ref|YP_003650063.1|	-	0.18	11.9	0.2	0.35	10.9	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_ribbon_SprT	PF17283.2	gi|296242576|ref|YP_003650063.1|	-	1.1	9.3	3.4	19	5.3	3.4	2.3	1	1	0	1	1	1	0	SprT-like	zinc	ribbon	domain
PAPS_reduct	PF01507.19	gi|296242577|ref|YP_003650064.1|	-	1e-39	136.4	0.0	2.3e-39	135.2	0.0	1.6	2	0	0	2	2	2	1	Phosphoadenosine	phosphosulfate	reductase	family
Trep_Strep	PF09605.10	gi|296242578|ref|YP_003650065.1|	-	0.0037	17.3	5.4	0.0044	17.0	5.4	1.0	1	0	0	1	1	1	1	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
DUF2189	PF09955.9	gi|296242578|ref|YP_003650065.1|	-	2	8.7	10.2	3.6	7.8	10.2	1.4	1	1	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2189)
YtpI	PF14007.6	gi|296242580|ref|YP_003650067.1|	-	0.085	13.0	0.0	0.093	12.9	0.0	1.0	1	0	0	1	1	1	0	YtpI-like	protein
DUF853	PF05872.12	gi|296242581|ref|YP_003650068.1|	-	1.3e-09	37.2	0.0	0.00059	18.6	0.0	2.3	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
DUF87	PF01935.17	gi|296242581|ref|YP_003650068.1|	-	2.4e-06	27.8	0.2	6.4e-05	23.2	0.0	2.3	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
AAA_10	PF12846.7	gi|296242581|ref|YP_003650068.1|	-	2.5e-05	23.4	0.0	0.11	11.4	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
TrwB_AAD_bind	PF10412.9	gi|296242581|ref|YP_003650068.1|	-	0.00027	20.0	0.0	0.023	13.6	0.0	2.2	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.18	gi|296242581|ref|YP_003650068.1|	-	0.00078	18.9	0.1	0.0032	16.9	0.0	2.0	3	0	0	3	3	3	1	FtsK/SpoIIIE	family
TraG-D_C	PF12696.7	gi|296242581|ref|YP_003650068.1|	-	0.0021	18.0	0.0	0.0083	16.1	0.0	1.9	1	1	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.6	gi|296242581|ref|YP_003650068.1|	-	0.0034	17.6	0.0	0.11	12.7	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|296242581|ref|YP_003650068.1|	-	0.014	15.7	0.0	0.084	13.2	0.0	2.1	2	2	0	2	2	2	0	AAA	ATPase	domain
NACHT	PF05729.12	gi|296242581|ref|YP_003650068.1|	-	0.021	14.7	1.0	0.15	12.0	0.2	2.6	3	0	0	3	3	3	0	NACHT	domain
AAA_21	PF13304.6	gi|296242581|ref|YP_003650068.1|	-	0.023	14.5	0.0	3.8	7.2	0.0	2.6	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Pox_A32	PF04665.12	gi|296242581|ref|YP_003650068.1|	-	0.041	13.3	0.0	3.8	6.9	0.0	2.4	2	0	0	2	2	2	0	Poxvirus	A32	protein
AAA_30	PF13604.6	gi|296242581|ref|YP_003650068.1|	-	0.045	13.5	0.0	0.29	10.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|296242581|ref|YP_003650068.1|	-	0.061	13.0	0.1	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|296242581|ref|YP_003650068.1|	-	0.13	12.6	0.2	0.38	11.1	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|296242581|ref|YP_003650068.1|	-	0.15	12.1	0.0	2.7	8.0	0.0	2.6	3	0	0	3	3	3	0	AAA	domain
AAA	PF00004.29	gi|296242581|ref|YP_003650068.1|	-	0.16	12.4	0.5	3.2	8.2	0.1	2.9	3	1	1	4	4	4	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|296242581|ref|YP_003650068.1|	-	0.18	12.3	0.0	0.82	10.2	0.0	2.0	2	0	0	2	2	2	0	ABC	transporter
Methyltrn_RNA_3	PF02598.17	gi|296242582|ref|YP_003650069.1|	-	2e-35	122.7	0.0	4.3e-34	118.3	0.0	2.0	1	1	0	1	1	1	1	Putative	RNA	methyltransferase
Ribosomal_L3	PF00297.22	gi|296242583|ref|YP_003650070.1|	-	2.6e-66	224.1	2.2	7.2e-64	216.1	2.2	2.9	1	1	0	1	1	1	1	Ribosomal	protein	L3
Ribosomal_L4	PF00573.22	gi|296242584|ref|YP_003650071.1|	-	5e-36	124.2	0.0	6.2e-36	123.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L23	PF00276.20	gi|296242585|ref|YP_003650072.1|	-	1.3e-17	63.9	6.0	1.1e-16	61.0	6.0	1.9	1	1	0	1	1	1	1	Ribosomal	protein	L23
Ribosomal_L2_C	PF03947.18	gi|296242586|ref|YP_003650073.1|	-	5.6e-45	152.6	1.2	8e-45	152.1	1.2	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|296242586|ref|YP_003650073.1|	-	1e-12	47.8	0.0	3e-12	46.3	0.0	1.8	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
ProQ_C	PF17516.2	gi|296242586|ref|YP_003650073.1|	-	0.12	11.8	0.5	64	3.1	0.0	3.2	2	1	1	3	3	3	0	ProQ	C-terminal	domain
AAA_5	PF07728.14	gi|296242587|ref|YP_003650074.1|	-	2.7e-17	63.0	0.0	5.4e-17	62.1	0.0	1.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.11	gi|296242587|ref|YP_003650074.1|	-	5.9e-05	22.9	0.0	0.00058	19.7	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|296242587|ref|YP_003650074.1|	-	0.001	18.8	0.0	0.4	10.4	0.0	2.3	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA	PF00004.29	gi|296242587|ref|YP_003650074.1|	-	0.0014	19.0	0.4	0.018	15.5	0.2	2.6	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|296242587|ref|YP_003650074.1|	-	0.021	14.5	0.0	0.041	13.6	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|296242587|ref|YP_003650074.1|	-	0.04	13.4	0.0	0.2	11.2	0.0	1.9	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
Mg_chelatase	PF01078.21	gi|296242587|ref|YP_003650074.1|	-	0.064	12.6	0.0	4.4	6.6	0.0	2.3	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.6	gi|296242587|ref|YP_003650074.1|	-	0.07	13.7	0.0	0.14	12.7	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|296242587|ref|YP_003650074.1|	-	0.11	12.8	0.0	1.3	9.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_11	PF13086.6	gi|296242587|ref|YP_003650074.1|	-	0.18	11.5	0.0	0.32	10.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
VWA_CoxE	PF05762.14	gi|296242588|ref|YP_003650075.1|	-	3.2e-13	49.6	1.6	6.4e-13	48.6	1.6	1.5	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
VWA_2	PF13519.6	gi|296242588|ref|YP_003650075.1|	-	3.6e-06	27.6	0.1	1.5e-05	25.6	0.1	2.0	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|296242588|ref|YP_003650075.1|	-	6.4e-05	23.3	0.2	0.00037	20.8	0.2	2.2	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
Ribosomal_S19	PF00203.21	gi|296242589|ref|YP_003650076.1|	-	3.4e-34	116.6	0.3	4.2e-34	116.3	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S19
bZIP_Maf	PF03131.17	gi|296242589|ref|YP_003650076.1|	-	0.091	13.3	0.2	0.15	12.6	0.2	1.3	1	0	0	1	1	1	0	bZIP	Maf	transcription	factor
Ribosomal_L22	PF00237.19	gi|296242590|ref|YP_003650077.1|	-	9e-29	99.8	0.1	1.1e-28	99.5	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S3_C	PF00189.20	gi|296242591|ref|YP_003650078.1|	-	4.5e-23	81.6	1.4	1.6e-22	79.8	1.5	1.8	2	0	0	2	2	2	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|296242591|ref|YP_003650078.1|	-	1.8e-13	50.1	0.0	3.8e-13	49.0	0.0	1.6	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|296242591|ref|YP_003650078.1|	-	0.013	15.3	0.5	0.044	13.6	0.1	2.0	3	0	0	3	3	3	0	KH	domain
KH_4	PF13083.6	gi|296242591|ref|YP_003650078.1|	-	0.087	12.7	0.0	0.18	11.7	0.0	1.6	1	0	0	1	1	1	0	KH	domain
Ribosomal_L29	PF00831.23	gi|296242592|ref|YP_003650079.1|	-	1.1e-20	73.3	5.3	1.1e-20	73.3	5.3	1.4	2	0	0	2	2	2	1	Ribosomal	L29	protein
UPF0086	PF01868.16	gi|296242593|ref|YP_003650080.1|	-	5.4e-17	61.5	0.0	6e-17	61.3	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
DUF4369	PF14289.6	gi|296242593|ref|YP_003650080.1|	-	0.03	14.8	0.0	0.039	14.5	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4369)
Ribosomal_S17	PF00366.20	gi|296242594|ref|YP_003650081.1|	-	7e-23	80.5	2.9	9.6e-23	80.1	2.9	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_S17_N	PF16205.5	gi|296242594|ref|YP_003650081.1|	-	0.0018	18.6	0.0	0.0036	17.6	0.0	1.6	1	0	0	1	1	1	1	Ribosomal_S17	N-terminal
Ribosomal_L14	PF00238.19	gi|296242595|ref|YP_003650082.1|	-	2.3e-38	131.0	0.0	2.6e-38	130.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_L26	PF16906.5	gi|296242596|ref|YP_003650083.1|	-	5.2e-34	116.6	0.4	6.5e-34	116.2	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|296242596|ref|YP_003650083.1|	-	7.1e-11	41.7	2.3	1.6e-10	40.6	2.3	1.6	1	0	0	1	1	1	1	KOW	motif
Ribosomal_S4e	PF00900.20	gi|296242597|ref|YP_003650084.1|	-	1.1e-24	86.1	0.1	1.9e-24	85.4	0.1	1.4	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.12	gi|296242597|ref|YP_003650084.1|	-	2.7e-17	62.6	3.5	2.7e-17	62.6	3.5	1.5	2	0	0	2	2	2	1	RS4NT	(NUC023)	domain
S4	PF01479.25	gi|296242597|ref|YP_003650084.1|	-	5.9e-11	41.9	0.3	1.9e-10	40.3	0.0	2.0	2	0	0	2	2	2	1	S4	domain
KOW	PF00467.29	gi|296242597|ref|YP_003650084.1|	-	0.049	13.6	2.8	0.16	12.0	2.8	2.0	1	0	0	1	1	1	0	KOW	motif
S4_2	PF13275.6	gi|296242597|ref|YP_003650084.1|	-	0.049	13.5	0.4	0.13	12.1	0.1	1.9	2	0	0	2	2	2	0	S4	domain
40S_S4_C	PF16121.5	gi|296242597|ref|YP_003650084.1|	-	0.12	12.1	0.0	0.24	11.1	0.0	1.6	1	0	0	1	1	1	0	40S	ribosomal	protein	S4	C-terminus
Ribosomal_L5_C	PF00673.21	gi|296242598|ref|YP_003650085.1|	-	2.1e-21	75.9	0.0	4.9e-21	74.7	0.0	1.6	2	0	0	2	2	2	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|296242598|ref|YP_003650085.1|	-	5e-20	71.6	0.1	8.9e-20	70.8	0.1	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S14	PF00253.21	gi|296242599|ref|YP_003650086.1|	-	1.5e-12	47.1	1.1	1.7e-12	46.9	1.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
Ribosomal_L37ae	PF01780.19	gi|296242599|ref|YP_003650086.1|	-	0.0018	18.3	0.3	0.0022	18.0	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Ribosomal_S8	PF00410.19	gi|296242600|ref|YP_003650087.1|	-	6.3e-26	90.8	0.0	7.8e-26	90.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_L6	PF00347.23	gi|296242601|ref|YP_003650088.1|	-	8.2e-25	87.3	4.3	4.2e-18	65.8	0.1	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
DUF1521	PF07481.11	gi|296242601|ref|YP_003650088.1|	-	0.021	14.9	0.1	1.2	9.1	0.0	2.3	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1521)
Oxygenase-NA	PF09859.9	gi|296242601|ref|YP_003650088.1|	-	0.19	11.2	0.0	0.27	10.7	0.0	1.2	1	0	0	1	1	1	0	Oxygenase,	catalysing	oxidative	methylation	of	damaged	DNA
Ribosomal_L32e	PF01655.18	gi|296242602|ref|YP_003650089.1|	-	1.8e-35	121.6	0.0	2.2e-35	121.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L32
HERV-K_env_2	PF13804.6	gi|296242602|ref|YP_003650089.1|	-	0.087	12.6	0.0	0.1	12.3	0.0	1.2	1	0	0	1	1	1	0	Retro-transcribing	viruses	envelope	glycoprotein
Ribosomal_L19e	PF01280.20	gi|296242603|ref|YP_003650090.1|	-	1.7e-51	174.0	8.3	1.9e-51	173.9	8.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
HSR	PF03172.13	gi|296242603|ref|YP_003650090.1|	-	0.039	14.1	0.0	0.066	13.4	0.0	1.3	1	0	0	1	1	1	0	HSR	domain
Ribosomal_L5e	PF17144.4	gi|296242604|ref|YP_003650091.1|	-	9.1e-28	97.3	2.1	3e-23	82.6	0.9	2.3	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18p	PF00861.22	gi|296242604|ref|YP_003650091.1|	-	3.3e-06	27.5	0.0	4.5e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Ribosomal_L18_c	PF14204.6	gi|296242604|ref|YP_003650091.1|	-	4.1e-05	24.4	0.0	7.7e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	L18	C-terminal	region
Ribosomal_S5_C	PF03719.15	gi|296242605|ref|YP_003650092.1|	-	2.7e-23	81.2	0.0	5.7e-23	80.1	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_S5	PF00333.20	gi|296242605|ref|YP_003650092.1|	-	1.3e-22	79.6	2.4	1.3e-22	79.6	2.4	2.4	3	0	0	3	3	3	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_L30	PF00327.20	gi|296242606|ref|YP_003650093.1|	-	6e-11	42.1	0.0	1.1e-10	41.2	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_L27A	PF00828.19	gi|296242607|ref|YP_003650094.1|	-	5.3e-21	75.6	1.2	7.8e-21	75.1	1.2	1.2	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L18	PF17135.4	gi|296242607|ref|YP_003650094.1|	-	0.014	14.8	0.2	0.03	13.7	0.1	1.7	1	1	0	1	1	1	0	Ribosomal	protein	60S	L18	and	50S	L18e
SecY	PF00344.20	gi|296242608|ref|YP_003650095.1|	-	2.4e-60	204.4	15.7	3.7e-60	203.7	15.7	1.3	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.9	gi|296242608|ref|YP_003650095.1|	-	2.7e-11	43.1	0.3	7.9e-11	41.6	0.3	1.9	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
Ribosomal_L34e	PF01199.18	gi|296242610|ref|YP_003650097.1|	-	3e-25	88.3	1.1	3.4e-25	88.2	1.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L34e
DZR	PF12773.7	gi|296242610|ref|YP_003650097.1|	-	0.015	15.3	0.1	0.02	14.9	0.1	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
Cytidylate_kin2	PF13189.6	gi|296242611|ref|YP_003650098.1|	-	2.3e-19	70.2	0.3	6.6e-12	45.9	0.1	2.1	1	1	1	2	2	2	2	Cytidylate	kinase-like	family
AAA_17	PF13207.6	gi|296242611|ref|YP_003650098.1|	-	3.9e-17	63.0	0.0	5e-17	62.6	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|296242611|ref|YP_003650098.1|	-	1.5e-12	48.1	0.0	2.2e-12	47.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|296242611|ref|YP_003650098.1|	-	1.5e-09	37.9	1.0	1.2e-05	25.2	0.1	2.2	1	1	0	2	2	2	2	Cytidylate	kinase
ADK	PF00406.22	gi|296242611|ref|YP_003650098.1|	-	1.2e-07	31.9	0.0	2e-07	31.3	0.0	1.7	1	1	0	1	1	1	1	Adenylate	kinase
AAA_28	PF13521.6	gi|296242611|ref|YP_003650098.1|	-	4.3e-06	27.1	0.0	6e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|296242611|ref|YP_003650098.1|	-	0.00023	21.6	0.0	0.00042	20.7	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|296242611|ref|YP_003650098.1|	-	0.0086	16.0	0.0	0.028	14.3	0.0	1.8	2	0	0	2	2	2	1	NTPase
AAA_33	PF13671.6	gi|296242611|ref|YP_003650098.1|	-	0.01	16.0	0.1	0.024	14.8	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
CoaE	PF01121.20	gi|296242611|ref|YP_003650098.1|	-	0.011	15.4	0.0	4.4	7.0	0.0	2.2	1	1	1	2	2	2	0	Dephospho-CoA	kinase
AAA_22	PF13401.6	gi|296242611|ref|YP_003650098.1|	-	0.014	15.6	0.0	0.028	14.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|296242611|ref|YP_003650098.1|	-	0.02	14.6	0.0	0.036	13.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Hydin_ADK	PF17213.3	gi|296242611|ref|YP_003650098.1|	-	0.025	14.8	0.0	0.034	14.4	0.0	1.2	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
AAA_16	PF13191.6	gi|296242611|ref|YP_003650098.1|	-	0.026	14.9	0.0	0.035	14.5	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.14	gi|296242611|ref|YP_003650098.1|	-	0.032	14.2	0.1	0.09	12.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Thymidylate_kin	PF02223.17	gi|296242611|ref|YP_003650098.1|	-	0.039	13.6	0.1	0.45	10.2	0.0	2.3	1	1	1	2	2	2	0	Thymidylate	kinase
NACHT	PF05729.12	gi|296242611|ref|YP_003650098.1|	-	0.048	13.6	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
RuvB_N	PF05496.12	gi|296242611|ref|YP_003650098.1|	-	0.067	12.9	0.0	0.29	10.8	0.0	2.0	1	1	1	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
ABC_tran	PF00005.27	gi|296242611|ref|YP_003650098.1|	-	0.14	12.6	0.0	0.28	11.7	0.0	1.3	1	1	0	1	1	1	0	ABC	transporter
Mg_chelatase	PF01078.21	gi|296242611|ref|YP_003650098.1|	-	0.17	11.2	0.0	0.29	10.5	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|296242611|ref|YP_003650098.1|	-	0.18	11.5	0.0	0.31	10.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Ribosomal_L14e	PF01929.17	gi|296242612|ref|YP_003650099.1|	-	0.00058	20.3	0.0	0.00085	19.8	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L14
KOW	PF00467.29	gi|296242612|ref|YP_003650099.1|	-	0.0026	17.6	2.6	0.0045	16.9	2.6	1.4	1	0	0	1	1	1	1	KOW	motif
MTS	PF05175.14	gi|296242613|ref|YP_003650100.1|	-	7.7e-36	123.2	0.0	8.4e-36	123.1	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|296242613|ref|YP_003650100.1|	-	4.4e-13	49.3	0.0	5.9e-13	48.9	0.0	1.3	2	0	0	2	2	2	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.6	gi|296242613|ref|YP_003650100.1|	-	1.8e-11	44.1	0.0	2.2e-11	43.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296242613|ref|YP_003650100.1|	-	3.9e-10	40.3	0.0	5.5e-10	39.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|296242613|ref|YP_003650100.1|	-	9.4e-09	35.3	0.0	1.1e-08	35.0	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_16	PF10294.9	gi|296242613|ref|YP_003650100.1|	-	1.7e-07	31.1	0.0	2.2e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	Lysine	methyltransferase
Methyltransf_18	PF12847.7	gi|296242613|ref|YP_003650100.1|	-	3.3e-07	30.4	0.0	4.3e-07	30.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|296242613|ref|YP_003650100.1|	-	5e-07	30.4	0.0	7.2e-07	29.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|296242613|ref|YP_003650100.1|	-	1.4e-06	28.8	0.0	2.4e-06	28.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|296242613|ref|YP_003650100.1|	-	8.8e-06	25.4	0.0	1.1e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_23	PF13489.6	gi|296242613|ref|YP_003650100.1|	-	0.00014	21.8	0.0	0.00019	21.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
TRM	PF02005.16	gi|296242613|ref|YP_003650100.1|	-	0.00038	19.7	0.0	0.00048	19.4	0.0	1.1	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Cons_hypoth95	PF03602.15	gi|296242613|ref|YP_003650100.1|	-	0.0016	18.2	0.0	0.002	17.8	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
UPF0020	PF01170.18	gi|296242613|ref|YP_003650100.1|	-	0.0017	18.1	0.0	0.0023	17.7	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
tRNA_U5-meth_tr	PF05958.11	gi|296242613|ref|YP_003650100.1|	-	0.01	14.8	0.0	0.015	14.3	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Ubie_methyltran	PF01209.18	gi|296242613|ref|YP_003650100.1|	-	0.014	14.8	0.0	0.017	14.5	0.0	1.2	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
GidB	PF02527.15	gi|296242613|ref|YP_003650100.1|	-	0.019	14.3	0.0	0.031	13.6	0.0	1.3	1	0	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
Methyltransf_32	PF13679.6	gi|296242613|ref|YP_003650100.1|	-	0.037	14.0	0.0	0.049	13.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|296242613|ref|YP_003650100.1|	-	0.087	12.3	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
PCMT	PF01135.19	gi|296242613|ref|YP_003650100.1|	-	0.12	12.1	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_2	PF00891.18	gi|296242613|ref|YP_003650100.1|	-	0.13	11.5	0.0	0.18	11.1	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
NeA_P2	PF12312.8	gi|296242616|ref|YP_003650103.1|	-	0.074	12.5	0.1	0.08	12.4	0.1	1.1	1	0	0	1	1	1	0	Nepovirus	subgroup	A	polyprotein
DNA_methylase	PF00145.17	gi|296242618|ref|YP_003650105.1|	-	7.8e-53	180.0	0.0	3.5e-52	177.8	0.0	2.0	1	1	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
HhH-GPD	PF00730.25	gi|296242620|ref|YP_003650107.1|	-	5.3e-15	55.8	0.0	7e-15	55.4	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|296242620|ref|YP_003650107.1|	-	5.2e-09	35.5	0.0	1.6e-08	34.0	0.0	1.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|296242620|ref|YP_003650107.1|	-	0.008	16.3	0.0	3.6	7.7	0.0	3.3	2	2	1	3	3	3	2	Helix-hairpin-helix	motif
RGS-like	PF09128.11	gi|296242620|ref|YP_003650107.1|	-	0.18	11.5	0.0	0.31	10.7	0.0	1.3	1	0	0	1	1	1	0	Regulator	of	G	protein	signalling-like	domain
EndIII_4Fe-2S	PF10576.9	gi|296242620|ref|YP_003650107.1|	-	0.53	10.7	7.9	0.94	9.9	7.9	1.4	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
TF_Zn_Ribbon	PF08271.12	gi|296242622|ref|YP_003650109.1|	-	0.0023	17.4	2.2	0.2	11.2	0.1	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
Cys_rich_CPXG	PF14255.6	gi|296242622|ref|YP_003650109.1|	-	0.003	17.4	0.7	1.3	9.0	0.4	2.0	2	0	0	2	2	2	2	Cysteine-rich	CPXCG
Zn_Tnp_IS1595	PF12760.7	gi|296242622|ref|YP_003650109.1|	-	0.0033	17.4	4.9	0.43	10.6	0.4	2.1	1	1	1	2	2	2	2	Transposase	zinc-ribbon	domain
zf-TFIIB	PF13453.6	gi|296242622|ref|YP_003650109.1|	-	0.0041	16.4	1.5	0.0078	15.5	1.5	1.5	1	1	0	1	1	1	1	Transcription	factor	zinc-finger
zinc_ribbon_4	PF13717.6	gi|296242622|ref|YP_003650109.1|	-	0.024	14.5	0.2	3.5	7.6	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
YacG	PF03884.14	gi|296242622|ref|YP_003650109.1|	-	0.033	13.9	1.0	1.1	9.1	0.2	2.1	2	0	0	2	2	2	0	DNA	gyrase	inhibitor	YacG
UPF0547	PF10571.9	gi|296242622|ref|YP_003650109.1|	-	0.071	13.2	0.6	0.071	13.2	0.6	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-C2H2_4	PF13894.6	gi|296242622|ref|YP_003650109.1|	-	0.081	13.8	2.3	10	7.3	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-ribbon_3	PF13248.6	gi|296242622|ref|YP_003650109.1|	-	0.092	12.2	6.1	0.1	12.0	0.5	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.19	gi|296242622|ref|YP_003650109.1|	-	0.11	12.5	0.1	0.12	12.3	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|296242622|ref|YP_003650109.1|	-	0.12	12.2	2.0	3	7.8	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
CpXC	PF14353.6	gi|296242622|ref|YP_003650109.1|	-	0.17	11.9	0.2	5.8	7.0	0.1	2.1	2	0	0	2	2	2	0	CpXC	protein
VP_N-CPKC	PF11475.8	gi|296242622|ref|YP_003650109.1|	-	0.22	11.5	1.7	0.32	10.9	0.1	2.0	2	0	0	2	2	2	0	Virion	protein	N	terminal	domain
zinc_ribbon_2	PF13240.6	gi|296242622|ref|YP_003650109.1|	-	0.24	11.2	7.3	0.55	10.0	1.5	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|296242622|ref|YP_003650109.1|	-	0.28	11.7	9.4	1	9.9	1.3	2.3	1	1	1	2	2	2	0	Zinc-finger	double	domain
zf-C2HC_2	PF13913.6	gi|296242622|ref|YP_003650109.1|	-	0.51	10.3	5.9	1.2	9.1	0.7	2.4	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Anti-TRAP	PF15777.5	gi|296242622|ref|YP_003650109.1|	-	0.59	10.1	2.8	2.2	8.3	2.8	1.8	1	1	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zf_C2H2_10	PF18414.1	gi|296242622|ref|YP_003650109.1|	-	7.3	6.2	7.8	4.1	7.0	1.3	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
N6_Mtase	PF02384.16	gi|296242623|ref|YP_003650110.1|	-	1.6e-28	99.9	0.0	4e-28	98.6	0.0	1.6	1	1	0	1	1	1	1	N-6	DNA	Methylase
UPF0020	PF01170.18	gi|296242623|ref|YP_003650110.1|	-	2.6e-06	27.3	0.0	6.9e-05	22.6	0.0	2.4	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
Eco57I	PF07669.11	gi|296242623|ref|YP_003650110.1|	-	1.1e-05	25.8	0.0	6.7e-05	23.4	0.0	2.4	2	1	0	2	2	2	1	Eco57I	restriction-modification	methylase
HSDR_N	PF04313.14	gi|296242623|ref|YP_003650110.1|	-	0.017	15.1	0.1	0.038	14.0	0.1	1.6	1	0	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
HSDR_N_2	PF13588.6	gi|296242623|ref|YP_003650110.1|	-	0.029	14.4	0.0	0.11	12.5	0.0	2.0	1	1	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
Methyltransf_31	PF13847.6	gi|296242623|ref|YP_003650110.1|	-	0.074	12.8	0.0	0.18	11.6	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
CoA_binding_3	PF13727.6	gi|296242623|ref|YP_003650110.1|	-	0.12	12.4	0.0	0.32	11.0	0.0	1.7	1	0	0	1	1	1	0	CoA-binding	domain
MTS	PF05175.14	gi|296242623|ref|YP_003650110.1|	-	0.13	11.8	0.0	44	3.6	0.0	3.6	4	0	0	4	4	4	0	Methyltransferase	small	domain
FAD_binding_1	PF00667.20	gi|296242627|ref|YP_003650114.1|	-	0.12	11.9	0.0	0.13	11.8	0.0	1.1	1	0	0	1	1	1	0	FAD	binding	domain
AAA_3	PF07726.11	gi|296242628|ref|YP_003650115.1|	-	3e-62	208.3	0.1	5.1e-62	207.5	0.1	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|296242628|ref|YP_003650115.1|	-	1.3e-23	82.6	0.8	3.9e-23	81.1	0.1	2.0	2	0	0	2	2	2	1	AAA	lid	domain
AAA_5	PF07728.14	gi|296242628|ref|YP_003650115.1|	-	4.3e-16	59.2	0.0	8.2e-16	58.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|296242628|ref|YP_003650115.1|	-	7.5e-07	29.6	0.1	2.9e-06	27.8	0.1	2.0	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MCM	PF00493.23	gi|296242628|ref|YP_003650115.1|	-	2.3e-05	23.6	0.0	4.6e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	MCM	P-loop	domain
RuvB_N	PF05496.12	gi|296242628|ref|YP_003650115.1|	-	9.7e-05	22.2	0.0	0.00078	19.2	0.0	2.1	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Sigma54_activat	PF00158.26	gi|296242628|ref|YP_003650115.1|	-	0.00026	20.7	0.4	0.001	18.8	0.1	2.1	2	1	0	2	2	2	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|296242628|ref|YP_003650115.1|	-	0.0042	16.5	0.4	1.3	8.4	0.1	2.2	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|296242628|ref|YP_003650115.1|	-	0.11	12.2	0.0	7.6	6.2	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|296242628|ref|YP_003650115.1|	-	0.13	12.7	0.1	3	8.2	0.0	2.2	1	1	0	2	2	2	0	AAA	ATPase	domain
DUF4129	PF13559.6	gi|296242629|ref|YP_003650116.1|	-	3.6e-06	27.1	0.2	1.6e-05	25.1	0.1	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
MID_MedPIWI	PF18296.1	gi|296242629|ref|YP_003650116.1|	-	0.1	12.4	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	MID	domain	of	medPIWI
Dr_adhesin	PF12393.8	gi|296242629|ref|YP_003650116.1|	-	0.38	11.1	0.9	0.83	10.0	0.9	1.6	1	0	0	1	1	1	0	Dr	family	adhesin
DUF2244	PF10003.9	gi|296242630|ref|YP_003650117.1|	-	0.18	11.5	0.0	0.18	11.5	0.0	2.3	2	1	1	3	3	3	0	Integral	membrane	protein	(DUF2244)
DUF423	PF04241.15	gi|296242631|ref|YP_003650118.1|	-	0.2	11.9	2.7	0.22	11.8	2.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF423)
DUF2178	PF09946.9	gi|296242632|ref|YP_003650119.1|	-	0.14	12.4	0.1	0.45	10.7	0.0	1.9	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2178)
DUF58	PF01882.18	gi|296242633|ref|YP_003650120.1|	-	3.3e-17	62.5	0.0	6e-17	61.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
VWA	PF00092.28	gi|296242633|ref|YP_003650120.1|	-	5.7e-06	26.7	0.0	1e-05	25.9	0.0	1.4	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|296242633|ref|YP_003650120.1|	-	2.2e-05	25.1	0.0	6.5e-05	23.5	0.0	1.8	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
Alpha-amylase	PF00128.24	gi|296242634|ref|YP_003650121.1|	-	1.1e-52	179.7	0.0	1.6e-52	179.2	0.0	1.2	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
AMPK1_CBM	PF16561.5	gi|296242634|ref|YP_003650121.1|	-	1.8e-06	28.0	0.0	4.4e-06	26.8	0.0	1.6	1	0	0	1	1	1	1	Glycogen	recognition	site	of	AMP-activated	protein	kinase
DUF3459	PF11941.8	gi|296242634|ref|YP_003650121.1|	-	0.0026	18.1	0.0	0.0053	17.1	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3459)
Internalin_N	PF12354.8	gi|296242635|ref|YP_003650122.1|	-	0.64	10.1	2.7	1.7	8.8	0.3	2.4	2	0	0	2	2	2	0	Bacterial	adhesion/invasion	protein	N	terminal
DUF4191	PF13829.6	gi|296242635|ref|YP_003650122.1|	-	1.6	8.0	3.8	0.37	10.1	0.2	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4191)
Nitro_FeMo-Co	PF02579.17	gi|296242636|ref|YP_003650123.1|	-	2.5e-05	24.5	0.0	3.1e-05	24.2	0.0	1.1	1	0	0	1	1	1	1	Dinitrogenase	iron-molybdenum	cofactor
HTH_45	PF14947.6	gi|296242638|ref|YP_003650125.1|	-	1.5e-17	63.3	1.0	3.4e-17	62.2	1.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|296242638|ref|YP_003650125.1|	-	0.0024	18.3	0.1	0.0087	16.5	0.0	2.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|296242638|ref|YP_003650125.1|	-	0.0067	16.3	0.0	0.018	14.9	0.0	1.8	2	0	0	2	2	2	1	MarR	family
DUF4364	PF14277.6	gi|296242638|ref|YP_003650125.1|	-	0.0093	15.7	0.0	0.023	14.4	0.0	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_34	PF13601.6	gi|296242638|ref|YP_003650125.1|	-	0.011	15.8	0.0	0.026	14.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|296242638|ref|YP_003650125.1|	-	0.016	15.0	0.1	0.26	11.2	0.0	2.5	2	1	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|296242638|ref|YP_003650125.1|	-	0.016	15.0	0.0	0.064	13.1	0.0	2.0	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|296242638|ref|YP_003650125.1|	-	0.035	13.7	0.2	0.097	12.2	0.1	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF3116	PF11313.8	gi|296242638|ref|YP_003650125.1|	-	0.11	12.4	0.1	0.26	11.1	0.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3116)
RWD	PF05773.22	gi|296242639|ref|YP_003650126.1|	-	0.0051	17.1	0.2	0.028	14.7	0.0	1.9	1	1	1	2	2	2	1	RWD	domain
VCBS	PF13517.6	gi|296242640|ref|YP_003650127.1|	-	0.00076	20.0	3.8	0.14	12.8	0.1	2.5	2	0	0	2	2	2	2	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
FG-GAP	PF01839.23	gi|296242640|ref|YP_003650127.1|	-	0.03	14.4	0.5	0.03	14.4	0.5	2.3	2	0	0	2	2	2	0	FG-GAP	repeat
EF-hand_5	PF13202.6	gi|296242640|ref|YP_003650127.1|	-	2.2	7.9	4.5	13	5.5	0.1	2.9	2	0	0	2	2	2	0	EF	hand
Peptidase_S24	PF00717.23	gi|296242641|ref|YP_003650128.1|	-	1e-06	28.6	0.1	1.8e-06	27.8	0.1	1.4	1	0	0	1	1	1	1	Peptidase	S24-like
RuBisCO_large	PF00016.20	gi|296242643|ref|YP_003650130.1|	-	4.1e-96	321.7	0.0	5.1e-96	321.4	0.0	1.1	1	0	0	1	1	1	1	Ribulose	bisphosphate	carboxylase	large	chain,	catalytic	domain
RuBisCO_large_N	PF02788.16	gi|296242643|ref|YP_003650130.1|	-	2.9e-44	150.1	0.0	5e-44	149.3	0.0	1.4	1	0	0	1	1	1	1	Ribulose	bisphosphate	carboxylase	large	chain,	N-terminal	domain
LigA	PF07746.11	gi|296242643|ref|YP_003650130.1|	-	0.089	13.0	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	Aromatic-ring-opening	dioxygenase	LigAB,	LigA	subunit
Archease	PF01951.16	gi|296242644|ref|YP_003650131.1|	-	1.3e-38	132.4	0.0	1.4e-38	132.2	0.0	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
Peptidase_M54	PF07998.11	gi|296242645|ref|YP_003650132.1|	-	1.1e-29	103.8	0.0	1.3e-29	103.6	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.24	gi|296242645|ref|YP_003650132.1|	-	0.00058	19.7	0.0	0.00061	19.7	0.0	1.2	1	0	0	1	1	1	1	Matrixin
Reprolysin_3	PF13582.6	gi|296242645|ref|YP_003650132.1|	-	0.0006	20.3	0.0	0.00083	19.9	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M43	PF05572.13	gi|296242645|ref|YP_003650132.1|	-	0.027	14.4	0.0	0.044	13.7	0.0	1.3	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
zf-4CXXC_R1	PF10497.9	gi|296242645|ref|YP_003650132.1|	-	0.034	14.4	0.7	0.046	13.9	0.1	1.5	2	0	0	2	2	2	0	Zinc-finger	domain	of	monoamine-oxidase	A	repressor	R1
HscB_4_cys	PF18256.1	gi|296242645|ref|YP_003650132.1|	-	0.068	13.0	0.1	0.16	11.8	0.1	1.6	1	0	0	1	1	1	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
Metallopep	PF12044.8	gi|296242645|ref|YP_003650132.1|	-	0.1	11.2	0.1	0.14	10.8	0.1	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
DUF4953	PF16313.5	gi|296242645|ref|YP_003650132.1|	-	0.15	11.3	0.1	0.22	10.7	0.1	1.2	1	0	0	1	1	1	0	Met-zincin
Peptidase_M66	PF10462.9	gi|296242645|ref|YP_003650132.1|	-	0.15	11.0	0.0	0.22	10.4	0.0	1.2	1	0	0	1	1	1	0	Peptidase	M66
Ala_racemase_C	PF00842.21	gi|296242645|ref|YP_003650132.1|	-	0.16	11.8	0.0	0.26	11.1	0.0	1.3	1	0	0	1	1	1	0	Alanine	racemase,	C-terminal	domain
NTP_transferase	PF00483.23	gi|296242646|ref|YP_003650133.1|	-	2.4e-34	119.0	0.0	2.7e-34	118.9	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|296242646|ref|YP_003650133.1|	-	6.6e-12	46.1	0.0	9.6e-12	45.5	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|296242646|ref|YP_003650133.1|	-	0.0033	17.2	0.0	0.0045	16.8	0.0	1.3	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF4224	PF13986.6	gi|296242646|ref|YP_003650133.1|	-	0.17	11.8	0.6	2.2	8.2	0.1	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4224)
FeS_assembly_P	PF01883.19	gi|296242647|ref|YP_003650134.1|	-	0.0022	18.1	0.0	0.0029	17.8	0.0	1.2	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
NifU	PF01106.17	gi|296242647|ref|YP_003650134.1|	-	0.077	13.2	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	NifU-like	domain
DUF4479	PF14794.6	gi|296242647|ref|YP_003650134.1|	-	0.15	12.0	0.0	0.27	11.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4479)
NitrOD5	PF11537.8	gi|296242648|ref|YP_003650135.1|	-	1.7e-07	31.2	0.0	9e-07	28.9	0.0	1.8	1	1	1	2	2	2	1	Nitrosopumilus	output	domain	5
ATPase	PF06745.13	gi|296242649|ref|YP_003650136.1|	-	1.9e-35	122.3	0.0	6e-34	117.4	0.0	2.2	2	0	0	2	2	2	1	KaiC
AAA_25	PF13481.6	gi|296242649|ref|YP_003650136.1|	-	1.3e-09	37.9	0.0	2.8e-09	36.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.11	gi|296242649|ref|YP_003650136.1|	-	8.1e-08	31.3	0.0	1.9e-07	30.1	0.0	1.5	2	0	0	2	2	2	1	GvpD	gas	vesicle	protein
AAA_24	PF13479.6	gi|296242649|ref|YP_003650136.1|	-	2e-06	27.6	0.0	4.5e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|296242649|ref|YP_003650136.1|	-	0.00029	20.2	0.0	0.0009	18.6	0.0	1.9	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
IstB_IS21	PF01695.17	gi|296242649|ref|YP_003650136.1|	-	0.0014	18.4	0.0	0.008	15.9	0.0	2.2	3	0	0	3	3	3	1	IstB-like	ATP	binding	protein
AAA_16	PF13191.6	gi|296242649|ref|YP_003650136.1|	-	0.0017	18.7	0.0	0.0048	17.3	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|296242649|ref|YP_003650136.1|	-	0.0066	16.9	0.0	0.024	15.0	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2075	PF09848.9	gi|296242649|ref|YP_003650136.1|	-	0.0071	15.6	0.0	0.0097	15.2	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Rad51	PF08423.11	gi|296242649|ref|YP_003650136.1|	-	0.0097	15.2	0.0	0.037	13.3	0.0	1.9	1	1	0	1	1	1	1	Rad51
CobA_CobO_BtuR	PF02572.15	gi|296242649|ref|YP_003650136.1|	-	0.01	16.1	0.0	0.02	15.2	0.0	1.5	1	0	0	1	1	1	0	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
AAA_33	PF13671.6	gi|296242649|ref|YP_003650136.1|	-	0.012	15.8	0.0	0.027	14.7	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
ATPase_2	PF01637.18	gi|296242649|ref|YP_003650136.1|	-	0.014	15.3	0.0	0.026	14.5	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
NACHT	PF05729.12	gi|296242649|ref|YP_003650136.1|	-	0.031	14.2	0.1	0.085	12.8	0.0	1.7	2	0	0	2	2	1	0	NACHT	domain
AAA_5	PF07728.14	gi|296242649|ref|YP_003650136.1|	-	0.033	14.2	0.1	0.1	12.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|296242649|ref|YP_003650136.1|	-	0.039	14.2	0.0	0.087	13.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|296242649|ref|YP_003650136.1|	-	0.048	14.0	0.0	0.083	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|296242649|ref|YP_003650136.1|	-	0.048	12.9	0.0	0.11	11.7	0.0	1.5	2	0	0	2	2	2	0	Zeta	toxin
AAA_14	PF13173.6	gi|296242649|ref|YP_003650136.1|	-	0.061	13.4	0.0	0.21	11.6	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|296242649|ref|YP_003650136.1|	-	0.081	13.5	0.0	0.17	12.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.7	gi|296242649|ref|YP_003650136.1|	-	0.084	11.8	0.0	0.12	11.3	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
cobW	PF02492.19	gi|296242649|ref|YP_003650136.1|	-	0.14	11.8	0.1	0.53	9.8	0.0	1.9	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_23	PF13476.6	gi|296242649|ref|YP_003650136.1|	-	0.2	12.1	0.0	0.39	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|296242649|ref|YP_003650136.1|	-	0.29	10.3	0.8	14	4.7	0.1	2.2	1	1	1	2	2	2	0	Anion-transporting	ATPase
HTH_5	PF01022.20	gi|296242650|ref|YP_003650137.1|	-	2.8e-14	52.7	3.2	1.5e-13	50.3	0.6	2.4	2	1	1	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|296242650|ref|YP_003650137.1|	-	8.7e-10	38.5	0.0	2.3e-09	37.1	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|296242650|ref|YP_003650137.1|	-	8.2e-08	31.7	0.2	6.2e-07	28.9	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|296242650|ref|YP_003650137.1|	-	6.5e-06	26.0	0.1	0.00015	21.6	0.1	2.3	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|296242650|ref|YP_003650137.1|	-	3.1e-05	23.8	0.0	0.0053	16.6	0.0	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.6	gi|296242650|ref|YP_003650137.1|	-	0.0007	19.7	0.2	0.0013	18.9	0.2	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|296242650|ref|YP_003650137.1|	-	0.0016	18.3	0.1	0.012	15.5	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_9	PF08221.11	gi|296242650|ref|YP_003650137.1|	-	0.003	17.6	0.7	0.0079	16.3	0.3	1.9	2	0	0	2	2	2	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|296242650|ref|YP_003650137.1|	-	0.0086	16.0	0.0	2.2	8.3	0.0	2.3	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|296242650|ref|YP_003650137.1|	-	0.025	14.4	0.1	0.07	13.0	0.0	1.7	2	0	0	2	2	2	0	TFIIE	alpha	subunit
HTH_27	PF13463.6	gi|296242650|ref|YP_003650137.1|	-	0.033	14.7	0.4	0.11	13.1	0.1	1.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
DUF2250	PF10007.9	gi|296242650|ref|YP_003650137.1|	-	0.039	14.1	0.1	0.27	11.4	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF4423	PF14394.6	gi|296242650|ref|YP_003650137.1|	-	0.056	13.1	0.0	0.084	12.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
SMC_ScpB	PF04079.16	gi|296242650|ref|YP_003650137.1|	-	0.059	13.0	0.1	0.17	11.5	0.0	1.7	2	0	0	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
Rio2_N	PF09202.11	gi|296242650|ref|YP_003650137.1|	-	0.063	13.5	0.0	0.12	12.6	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
TBPIP	PF07106.13	gi|296242650|ref|YP_003650137.1|	-	0.14	12.1	0.3	0.49	10.4	0.1	1.9	2	0	0	2	2	2	0	TBPIP/Hop2	winged	helix	domain
Rrf2	PF02082.20	gi|296242650|ref|YP_003650137.1|	-	0.16	12.3	0.2	0.35	11.3	0.1	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
Fer4_6	PF12837.7	gi|296242651|ref|YP_003650138.1|	-	6.2e-13	48.2	11.2	2.7e-06	27.2	3.1	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|296242651|ref|YP_003650138.1|	-	1.7e-12	46.6	15.9	1.4e-07	31.0	2.2	2.9	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|296242651|ref|YP_003650138.1|	-	7.5e-12	45.2	20.9	1.3e-09	38.1	10.0	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296242651|ref|YP_003650138.1|	-	2.5e-11	43.0	13.0	4e-06	26.6	2.1	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|296242651|ref|YP_003650138.1|	-	4.9e-10	39.8	21.8	1.5e-07	31.9	12.5	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|296242651|ref|YP_003650138.1|	-	2.4e-09	37.2	7.9	2.9e-09	36.9	7.9	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296242651|ref|YP_003650138.1|	-	3.3e-06	27.1	9.4	1e-05	25.6	9.6	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|296242651|ref|YP_003650138.1|	-	6.7e-06	26.9	9.0	0.0068	17.3	2.1	2.1	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|296242651|ref|YP_003650138.1|	-	0.00018	21.7	12.2	0.0046	17.4	1.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|296242651|ref|YP_003650138.1|	-	0.0009	20.0	19.0	0.056	14.4	6.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|296242651|ref|YP_003650138.1|	-	0.0012	19.0	3.1	0.0017	18.5	1.7	1.7	1	1	1	2	2	2	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_13	PF13370.6	gi|296242651|ref|YP_003650138.1|	-	0.0026	18.3	9.8	0.12	13.0	9.8	2.2	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|296242651|ref|YP_003650138.1|	-	0.0069	17.1	7.0	0.11	13.2	7.0	2.2	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|296242651|ref|YP_003650138.1|	-	0.011	16.6	7.5	0.34	11.8	0.5	2.1	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|296242651|ref|YP_003650138.1|	-	0.041	14.3	15.0	28	5.3	15.0	2.1	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|296242651|ref|YP_003650138.1|	-	0.055	14.0	12.5	0.31	11.6	1.9	2.1	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|296242651|ref|YP_003650138.1|	-	0.1	12.8	8.7	1.7	8.9	4.0	2.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Metallophos_2	PF12850.7	gi|296242653|ref|YP_003650140.1|	-	9.1e-26	91.0	0.0	1.2e-25	90.7	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|296242653|ref|YP_003650140.1|	-	2.4e-16	60.8	0.4	2.7e-15	57.4	0.4	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
FBPase_2	PF06874.11	gi|296242653|ref|YP_003650140.1|	-	0.00072	18.0	0.6	0.037	12.3	0.1	2.1	1	1	1	2	2	2	2	Firmicute	fructose-1,6-bisphosphatase
DEAD	PF00270.29	gi|296242654|ref|YP_003650141.1|	-	5.5e-19	68.6	0.0	4.1e-18	65.8	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|296242654|ref|YP_003650141.1|	-	7.1e-14	52.1	0.0	1.5e-13	51.0	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|296242654|ref|YP_003650141.1|	-	4.4e-05	23.6	0.0	0.00012	22.2	0.0	1.7	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Flavi_DEAD	PF07652.14	gi|296242654|ref|YP_003650141.1|	-	0.0029	17.6	0.0	2.5	8.1	0.0	2.4	2	0	0	2	2	2	2	Flavivirus	DEAD	domain
UvrD-helicase	PF00580.21	gi|296242654|ref|YP_003650141.1|	-	0.25	10.8	0.3	1.6	8.2	0.0	2.2	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
ADH_N	PF08240.12	gi|296242655|ref|YP_003650142.1|	-	7.5e-35	119.1	1.0	1.4e-34	118.2	1.0	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|296242655|ref|YP_003650142.1|	-	1.5e-05	26.1	0.3	3.5e-05	24.9	0.2	1.7	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N	PF00107.26	gi|296242655|ref|YP_003650142.1|	-	1.5e-05	25.0	0.0	4.3e-05	23.5	0.0	1.8	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
SfsA	PF03749.13	gi|296242657|ref|YP_003650144.1|	-	1.6e-24	86.3	0.0	2.4e-24	85.8	0.0	1.2	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein	RE	domain
SfsA_N	PF17746.1	gi|296242657|ref|YP_003650144.1|	-	5e-16	58.6	0.1	9.1e-16	57.8	0.1	1.4	1	0	0	1	1	1	1	SfsA	N-terminal	OB	domain
DUF1905	PF08922.11	gi|296242657|ref|YP_003650144.1|	-	0.036	14.1	0.0	0.068	13.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
dUTPase	PF00692.19	gi|296242658|ref|YP_003650145.1|	-	2e-14	53.4	0.0	2.9e-14	52.9	0.0	1.2	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.11	gi|296242658|ref|YP_003650145.1|	-	0.0011	17.9	0.0	0.0018	17.1	0.0	1.4	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
Thy1	PF02511.15	gi|296242659|ref|YP_003650146.1|	-	7.1e-58	195.5	0.4	8.6e-58	195.2	0.4	1.1	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
PA28_alpha	PF02251.18	gi|296242659|ref|YP_003650146.1|	-	0.11	12.5	0.1	0.46	10.6	0.1	2.0	2	0	0	2	2	2	0	Proteasome	activator	pa28	alpha	subunit
PspC	PF04024.12	gi|296242660|ref|YP_003650147.1|	-	4.9e-23	80.7	1.9	4.9e-23	80.7	1.9	1.9	2	1	0	2	2	2	1	PspC	domain
PLDc_N	PF13396.6	gi|296242660|ref|YP_003650147.1|	-	0.0015	18.4	3.1	0.0015	18.4	3.1	3.1	3	1	1	4	4	4	1	Phospholipase_D-nuclease	N-terminal
Colicin_V	PF02674.16	gi|296242660|ref|YP_003650147.1|	-	0.0023	17.9	9.0	0.0064	16.5	9.1	1.9	1	1	0	1	1	1	1	Colicin	V	production	protein
ThrE	PF06738.12	gi|296242660|ref|YP_003650147.1|	-	0.022	14.1	0.9	0.029	13.8	0.9	1.2	1	0	0	1	1	1	0	Putative	threonine/serine	exporter
DUF4064	PF13273.6	gi|296242660|ref|YP_003650147.1|	-	0.079	13.2	6.5	4.9	7.5	0.5	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4064)
DUF2207	PF09972.9	gi|296242660|ref|YP_003650147.1|	-	0.93	8.2	2.8	6.9	5.3	3.4	1.9	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2207)
Gram_pos_anchor	PF00746.21	gi|296242660|ref|YP_003650147.1|	-	5.8	6.9	6.3	16	5.5	0.9	2.4	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
Radical_SAM	PF04055.21	gi|296242661|ref|YP_003650148.1|	-	7.4e-17	62.2	0.0	1e-16	61.8	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|296242661|ref|YP_003650148.1|	-	5.9e-09	36.3	0.1	9.4e-09	35.7	0.1	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|296242661|ref|YP_003650148.1|	-	9.6e-08	32.2	0.0	1.8e-07	31.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
NRDD	PF13597.6	gi|296242662|ref|YP_003650149.1|	-	3.1e-147	491.7	0.0	3.6e-147	491.5	0.0	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
TackOD1	PF18551.1	gi|296242662|ref|YP_003650149.1|	-	0.00018	21.3	0.0	0.0005	19.8	0.0	1.6	2	0	0	2	2	2	1	Thaumarchaeal	output	domain	1
HypA	PF01155.19	gi|296242662|ref|YP_003650149.1|	-	0.0029	17.6	0.1	0.0055	16.7	0.1	1.4	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ribbon_3	PF13248.6	gi|296242662|ref|YP_003650149.1|	-	0.011	15.1	5.0	0.023	14.1	5.0	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|296242662|ref|YP_003650149.1|	-	0.065	14.0	0.0	0.11	13.2	0.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	family
DUF35_N	PF12172.8	gi|296242662|ref|YP_003650149.1|	-	0.13	12.1	1.6	21	5.1	0.2	3.0	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin_2	PF18073.1	gi|296242662|ref|YP_003650149.1|	-	1	9.1	7.4	0.23	11.2	3.7	1.9	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|296242662|ref|YP_003650149.1|	-	1.9	8.7	4.8	21	5.4	5.3	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|296242662|ref|YP_003650149.1|	-	8.6	6.2	7.7	3.9	7.3	0.8	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
EMG1	PF03587.14	gi|296242663|ref|YP_003650150.1|	-	1.5e-50	171.6	0.0	1.7e-50	171.4	0.0	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
Glyco_transf_4	PF13439.6	gi|296242663|ref|YP_003650150.1|	-	0.015	15.3	0.1	0.022	14.8	0.1	1.3	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
Rpr2	PF04032.16	gi|296242664|ref|YP_003650151.1|	-	2.9e-16	59.5	0.1	3.6e-16	59.2	0.1	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Fis1_TPR_C	PF14853.6	gi|296242664|ref|YP_003650151.1|	-	0.025	14.6	0.1	0.043	13.9	0.1	1.3	1	0	0	1	1	1	0	Fis1	C-terminal	tetratricopeptide	repeat
CRS1_YhbY	PF01985.21	gi|296242665|ref|YP_003650152.1|	-	1.6e-13	50.6	1.4	1.8e-13	50.4	1.4	1.1	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
Amidohydro_2	PF04909.14	gi|296242665|ref|YP_003650152.1|	-	0.088	12.6	0.2	0.093	12.5	0.2	1.1	1	0	0	1	1	1	0	Amidohydrolase
Ribosomal_S19e	PF01090.19	gi|296242666|ref|YP_003650153.1|	-	1.1e-50	170.9	0.0	1.3e-50	170.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S19e
HTH_12	PF08461.10	gi|296242666|ref|YP_003650153.1|	-	0.00027	20.8	0.4	0.0011	18.9	0.4	2.0	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
RuvB_C	PF05491.13	gi|296242666|ref|YP_003650153.1|	-	0.0062	16.4	0.2	0.017	15.0	0.1	1.7	2	0	0	2	2	2	1	RuvB	C-terminal	winged	helix	domain
HTH_45	PF14947.6	gi|296242666|ref|YP_003650153.1|	-	0.063	13.3	0.0	0.13	12.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix
TrmB	PF01978.19	gi|296242666|ref|YP_003650153.1|	-	0.066	13.1	0.1	0.17	11.8	0.1	1.8	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|296242666|ref|YP_003650153.1|	-	0.076	13.1	0.3	0.18	11.9	0.3	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|296242666|ref|YP_003650153.1|	-	0.1	13.0	0.0	0.15	12.4	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
dsDNA_bind	PF01984.20	gi|296242667|ref|YP_003650154.1|	-	6.5e-24	84.3	9.6	1.2e-23	83.5	9.6	1.4	1	1	0	1	1	1	1	Double-stranded	DNA-binding	domain
Herpes_UL14	PF03580.14	gi|296242667|ref|YP_003650154.1|	-	0.0092	16.2	1.1	0.012	15.8	1.1	1.2	1	0	0	1	1	1	1	Herpesvirus	UL14-like	protein
Radial_spoke_3	PF06098.11	gi|296242667|ref|YP_003650154.1|	-	0.019	14.3	6.4	0.024	13.9	6.4	1.0	1	0	0	1	1	1	0	Radial	spoke	protein	3
betaPIX_CC	PF16523.5	gi|296242667|ref|YP_003650154.1|	-	0.02	14.7	2.7	0.02	14.7	2.7	1.6	2	0	0	2	2	2	0	betaPIX	coiled	coil
Phage_Arf	PF17585.2	gi|296242667|ref|YP_003650154.1|	-	0.029	14.3	0.4	0.1	12.5	0.1	2.1	2	0	0	2	2	2	0	Accessory	recombination	function	protein
PurS	PF02700.14	gi|296242667|ref|YP_003650154.1|	-	0.059	13.6	0.4	0.094	12.9	0.4	1.4	1	0	0	1	1	1	0	Phosphoribosylformylglycinamidine	(FGAM)	synthase
RICH	PF05062.12	gi|296242667|ref|YP_003650154.1|	-	0.086	13.2	1.6	5.6	7.4	0.0	2.4	2	1	0	2	2	2	0	RICH	domain
DNA_pol_A_exoN	PF18305.1	gi|296242667|ref|YP_003650154.1|	-	0.23	11.8	2.6	9.1	6.7	0.2	2.3	1	1	1	2	2	2	0	3'	to	5'	exonuclease	C-terminal	domain
Ribosomal_L39	PF00832.20	gi|296242668|ref|YP_003650155.1|	-	8.4e-16	57.3	9.8	9.7e-16	57.1	9.8	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
Ala_racemase_N	PF01168.20	gi|296242668|ref|YP_003650155.1|	-	0.0067	16.1	0.0	0.0071	16.0	0.0	1.1	1	0	0	1	1	1	1	Alanine	racemase,	N-terminal	domain
Ribosomal_L31e	PF01198.19	gi|296242669|ref|YP_003650156.1|	-	6.9e-09	35.8	1.4	8.6e-09	35.5	1.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
eIF-6	PF01912.18	gi|296242670|ref|YP_003650157.1|	-	4.1e-62	209.1	1.7	4.7e-62	208.9	1.7	1.0	1	0	0	1	1	1	1	eIF-6	family
PyrI_C	PF02748.15	gi|296242670|ref|YP_003650157.1|	-	0.1	12.5	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Ribosomal_L18A	PF01775.17	gi|296242671|ref|YP_003650158.1|	-	1.4e-13	51.0	0.4	5.7e-13	49.0	0.2	1.9	1	1	1	2	2	2	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
Prefoldin	PF02996.17	gi|296242672|ref|YP_003650159.1|	-	4e-15	55.8	0.1	5.2e-15	55.4	0.1	1.2	1	0	0	1	1	1	1	Prefoldin	subunit
Prefoldin_2	PF01920.20	gi|296242672|ref|YP_003650159.1|	-	5.7e-06	26.2	0.1	0.044	13.7	0.0	2.1	2	0	0	2	2	2	2	Prefoldin	subunit
ZapB	PF06005.12	gi|296242672|ref|YP_003650159.1|	-	1.8e-05	25.1	0.9	0.0028	18.0	0.2	2.4	2	0	0	2	2	2	1	Cell	division	protein	ZapB
Sec34	PF04136.15	gi|296242672|ref|YP_003650159.1|	-	0.0036	17.2	0.6	0.85	9.5	0.1	2.1	2	0	0	2	2	2	2	Sec34-like	family
EzrA	PF06160.12	gi|296242672|ref|YP_003650159.1|	-	0.034	12.3	0.1	0.034	12.3	0.1	1.6	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
TolA_bind_tri	PF16331.5	gi|296242672|ref|YP_003650159.1|	-	0.054	13.6	1.7	0.58	10.3	0.4	2.1	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
Holin_BhlA	PF10960.8	gi|296242672|ref|YP_003650159.1|	-	0.068	13.1	0.0	0.14	12.1	0.0	1.6	1	0	0	1	1	1	0	BhlA	holin	family
BAR	PF03114.18	gi|296242672|ref|YP_003650159.1|	-	0.069	12.8	0.1	2.8	7.5	0.0	2.0	2	0	0	2	2	2	0	BAR	domain
CLZ	PF16526.5	gi|296242672|ref|YP_003650159.1|	-	0.075	13.4	2.1	0.11	12.9	0.4	1.9	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
YabA	PF06156.13	gi|296242672|ref|YP_003650159.1|	-	0.11	13.2	0.5	11	6.8	0.1	2.1	2	0	0	2	2	2	0	Initiation	control	protein	YabA
Vps51	PF08700.11	gi|296242672|ref|YP_003650159.1|	-	0.14	12.3	3.0	0.45	10.6	0.3	2.1	2	0	0	2	2	2	0	Vps51/Vps67
RRP7	PF12923.7	gi|296242672|ref|YP_003650159.1|	-	0.14	12.3	0.0	0.7	10.0	0.0	1.9	1	1	1	2	2	2	0	Ribosomal	RNA-processing	protein	7	(RRP7)	C-terminal	domain
Fib_alpha	PF08702.10	gi|296242672|ref|YP_003650159.1|	-	0.14	12.4	1.8	6.2	7.0	0.2	2.1	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
IFT57	PF10498.9	gi|296242672|ref|YP_003650159.1|	-	0.45	9.4	2.2	0.65	8.9	0.5	1.8	2	0	0	2	2	2	0	Intra-flagellar	transport	protein	57
ATG16	PF08614.11	gi|296242672|ref|YP_003650159.1|	-	0.54	10.5	4.3	0.23	11.6	1.0	1.8	2	0	0	2	2	2	0	Autophagy	protein	16	(ATG16)
TMF_DNA_bd	PF12329.8	gi|296242672|ref|YP_003650159.1|	-	1.8	8.6	4.4	2.9	7.9	0.5	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
SRP54	PF00448.22	gi|296242673|ref|YP_003650160.1|	-	5e-71	238.4	0.0	7.7e-71	237.8	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|296242673|ref|YP_003650160.1|	-	2.1e-07	31.1	3.4	2.1e-07	31.1	3.4	1.6	2	0	0	2	2	1	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|296242673|ref|YP_003650160.1|	-	2e-05	24.6	0.0	5.9e-05	23.1	0.0	1.8	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MeaB	PF03308.16	gi|296242673|ref|YP_003650160.1|	-	4.7e-05	22.5	0.4	0.00038	19.5	0.4	2.1	1	1	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
cobW	PF02492.19	gi|296242673|ref|YP_003650160.1|	-	0.00029	20.5	0.0	0.00059	19.5	0.0	1.5	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_30	PF13604.6	gi|296242673|ref|YP_003650160.1|	-	0.0013	18.5	0.1	0.0026	17.5	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_31	PF13614.6	gi|296242673|ref|YP_003650160.1|	-	0.0022	18.0	1.1	0.0037	17.2	0.2	2.0	2	1	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.15	gi|296242673|ref|YP_003650160.1|	-	0.0028	17.6	0.3	0.071	13.0	0.3	2.5	1	1	0	1	1	1	1	NTPase
AAA_24	PF13479.6	gi|296242673|ref|YP_003650160.1|	-	0.005	16.6	0.1	0.018	14.8	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
HlyE	PF06109.13	gi|296242673|ref|YP_003650160.1|	-	0.0081	15.5	0.1	0.015	14.7	0.1	1.4	1	0	0	1	1	1	1	Haemolysin	E	(HlyE)
AAA_19	PF13245.6	gi|296242673|ref|YP_003650160.1|	-	0.02	15.3	0.0	0.035	14.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|296242673|ref|YP_003650160.1|	-	0.025	13.8	0.3	0.14	11.3	0.1	2.1	2	0	0	2	2	2	0	Anion-transporting	ATPase
AAA_16	PF13191.6	gi|296242673|ref|YP_003650160.1|	-	0.035	14.5	0.6	0.13	12.7	0.1	2.1	2	1	0	2	2	2	0	AAA	ATPase	domain
Thymidylate_kin	PF02223.17	gi|296242673|ref|YP_003650160.1|	-	0.073	12.7	0.2	0.71	9.5	0.0	2.5	3	0	0	3	3	3	0	Thymidylate	kinase
AAA_33	PF13671.6	gi|296242673|ref|YP_003650160.1|	-	0.086	13.0	0.0	0.33	11.1	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|296242673|ref|YP_003650160.1|	-	0.097	12.6	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_17	PF13207.6	gi|296242673|ref|YP_003650160.1|	-	0.1	13.1	0.6	0.4	11.1	0.1	2.2	2	1	0	2	2	2	0	AAA	domain
TPP_enzyme_M	PF00205.22	gi|296242673|ref|YP_003650160.1|	-	0.1	12.3	0.1	0.51	10.1	0.0	2.2	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	central	domain
G-alpha	PF00503.20	gi|296242673|ref|YP_003650160.1|	-	0.11	11.6	0.0	0.24	10.5	0.0	1.5	2	0	0	2	2	2	0	G-protein	alpha	subunit
AAA_29	PF13555.6	gi|296242673|ref|YP_003650160.1|	-	0.16	11.7	0.0	1.8	8.4	0.0	2.3	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|296242673|ref|YP_003650160.1|	-	0.59	10.6	3.7	0.68	10.4	0.1	2.5	2	2	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MMR_HSR1	PF01926.23	gi|296242673|ref|YP_003650160.1|	-	0.66	10.1	2.2	1.4	9.0	0.6	2.2	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
SecE	PF00584.20	gi|296242674|ref|YP_003650161.1|	-	0.0017	18.2	0.1	0.0022	17.9	0.1	1.2	1	1	0	1	1	1	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Spt5-NGN	PF03439.13	gi|296242675|ref|YP_003650162.1|	-	1.1e-17	63.7	0.1	1.9e-17	62.9	0.1	1.4	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|296242675|ref|YP_003650162.1|	-	3.5e-07	30.0	0.4	7.3e-07	28.9	0.4	1.5	1	0	0	1	1	1	1	KOW	motif
Ribosomal_L11_N	PF03946.14	gi|296242676|ref|YP_003650163.1|	-	1.1e-23	82.8	0.8	2e-23	82.0	0.8	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L11	PF00298.19	gi|296242676|ref|YP_003650163.1|	-	1.6e-20	73.4	2.5	2.4e-20	72.8	2.5	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Ribosomal_L1	PF00687.21	gi|296242677|ref|YP_003650164.1|	-	4.3e-36	124.6	0.0	5.1e-36	124.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L10	PF00466.20	gi|296242678|ref|YP_003650165.1|	-	5.7e-24	84.2	0.8	9.9e-24	83.4	0.1	1.8	2	0	0	2	2	2	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|296242678|ref|YP_003650165.1|	-	1.7e-16	59.9	0.2	6.5e-16	58.1	0.2	2.0	1	0	0	1	1	1	1	Insertion	domain	in	60S	ribosomal	protein	L10P
7TMR-HDED	PF07697.11	gi|296242678|ref|YP_003650165.1|	-	0.016	15.3	0.1	0.041	14.0	0.1	1.6	1	0	0	1	1	1	0	7TM-HD	extracellular
Aquarius_N	PF16399.5	gi|296242678|ref|YP_003650165.1|	-	0.025	12.6	0.0	0.04	12.0	0.0	1.2	1	0	0	1	1	1	0	Intron-binding	protein	aquarius	N-terminus
Ribosomal_60s	PF00428.19	gi|296242679|ref|YP_003650166.1|	-	3.5e-16	59.6	12.3	4.1e-16	59.4	12.3	1.1	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
PepSY_2	PF13670.6	gi|296242679|ref|YP_003650166.1|	-	8.6e-05	22.5	5.8	0.03	14.3	3.1	2.1	2	0	0	2	2	2	2	Peptidase	propeptide	and	YPEB	domain
Ribonuc_L-PSP	PF01042.21	gi|296242679|ref|YP_003650166.1|	-	0.006	16.6	0.2	0.0079	16.2	0.2	1.2	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
EF-hand_14	PF17959.1	gi|296242679|ref|YP_003650166.1|	-	0.01	16.1	0.0	0.016	15.5	0.0	1.3	1	0	0	1	1	1	0	EF-hand	domain
TFIID_30kDa	PF03540.13	gi|296242679|ref|YP_003650166.1|	-	0.048	13.6	0.1	0.14	12.2	0.1	1.8	1	1	0	1	1	1	0	Transcription	initiation	factor	TFIID	23-30kDa	subunit
tRNA-synt_2c	PF01411.19	gi|296242680|ref|YP_003650167.1|	-	2.9e-90	303.4	0.0	3.1e-88	296.6	0.0	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|296242680|ref|YP_003650167.1|	-	2.3e-11	43.6	0.0	4.6e-11	42.6	0.0	1.6	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2e	PF02091.15	gi|296242680|ref|YP_003650167.1|	-	0.00068	19.0	0.1	0.0014	18.0	0.1	1.4	1	0	0	1	1	1	1	Glycyl-tRNA	synthetase	alpha	subunit
DHHA1	PF02272.19	gi|296242680|ref|YP_003650167.1|	-	0.0018	18.7	0.5	0.0018	18.7	0.5	2.0	2	0	0	2	2	2	1	DHHA1	domain
FliH	PF02108.16	gi|296242680|ref|YP_003650167.1|	-	0.05	13.7	0.5	0.27	11.3	0.2	2.4	2	0	0	2	2	2	0	Flagellar	assembly	protein	FliH
Transglut_core	PF01841.19	gi|296242681|ref|YP_003650168.1|	-	2.4e-06	27.9	0.0	3.9e-06	27.3	0.0	1.4	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF553	PF04473.12	gi|296242681|ref|YP_003650168.1|	-	0.00012	21.6	0.0	0.00053	19.6	0.0	1.9	1	1	1	2	2	2	1	Transglutaminase-like	domain
EMP24_GP25L	PF01105.24	gi|296242681|ref|YP_003650168.1|	-	0.0079	16.2	0.1	0.019	14.9	0.0	1.6	2	0	0	2	2	2	1	emp24/gp25L/p24	family/GOLD
SdrD_B	PF17210.3	gi|296242681|ref|YP_003650168.1|	-	0.062	13.5	1.2	2.3	8.5	0.2	2.2	2	0	0	2	2	2	0	SdrD	B-like	domain
EF-hand_5	PF13202.6	gi|296242681|ref|YP_003650168.1|	-	0.16	11.5	0.1	0.29	10.7	0.1	1.5	1	0	0	1	1	1	0	EF	hand
Transp_cyt_pur	PF02133.15	gi|296242682|ref|YP_003650169.1|	-	6.4e-40	137.2	39.6	7.5e-40	137.0	39.6	1.0	1	0	0	1	1	1	1	Permease	for	cytosine/purines,	uracil,	thiamine,	allantoin
UL41A	PF17591.2	gi|296242683|ref|YP_003650170.1|	-	9	6.5	6.5	3.2	7.9	1.9	2.3	2	0	0	2	2	2	0	Herpesvirus	UL41A
DUF5518	PF17647.1	gi|296242684|ref|YP_003650171.1|	-	6.5e-06	26.3	44.7	8.3e-06	25.9	44.7	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
Glyco_transf_4	PF13439.6	gi|296242685|ref|YP_003650172.1|	-	1.6e-07	31.4	0.5	1e-05	25.6	0.1	2.2	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_tran_28_C	PF04101.16	gi|296242685|ref|YP_003650172.1|	-	4.2e-07	30.1	0.0	8.8e-07	29.0	0.0	1.6	1	1	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Glyco_trans_4_4	PF13579.6	gi|296242685|ref|YP_003650172.1|	-	1.4e-06	28.8	0.3	1.4e-06	28.8	0.3	2.0	1	1	1	2	2	2	1	Glycosyl	transferase	4-like	domain
YjeF_N	PF03853.15	gi|296242685|ref|YP_003650172.1|	-	0.036	14.0	0.1	0.1	12.5	0.1	1.7	2	0	0	2	2	2	0	YjeF-related	protein	N-terminus
Glyco_transf_28	PF03033.20	gi|296242685|ref|YP_003650172.1|	-	0.12	12.4	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Glycosyltransferase	family	28	N-terminal	domain
HTH_23	PF13384.6	gi|296242686|ref|YP_003650173.1|	-	0.007	16.1	0.0	0.018	14.8	0.0	1.7	1	1	1	2	2	2	1	Homeodomain-like	domain
HTH_24	PF13412.6	gi|296242686|ref|YP_003650173.1|	-	0.012	15.2	0.0	0.025	14.2	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_3	PF01381.22	gi|296242686|ref|YP_003650173.1|	-	0.064	13.3	0.1	0.17	12.0	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix
SBP_bac_5	PF00496.22	gi|296242687|ref|YP_003650174.1|	-	1.7e-88	297.2	1.1	2e-88	296.9	1.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Big_11	PF18200.1	gi|296242687|ref|YP_003650174.1|	-	0.13	12.2	0.0	0.31	11.0	0.0	1.5	1	0	0	1	1	1	0	Bacterial	Ig-like	domain
BPD_transp_1	PF00528.22	gi|296242688|ref|YP_003650175.1|	-	2.7e-37	128.3	11.2	2.7e-37	128.3	11.2	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|296242689|ref|YP_003650176.1|	-	1.7e-22	80.1	11.2	1.7e-22	80.1	11.2	2.2	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|296242689|ref|YP_003650176.1|	-	8.5e-06	25.7	0.1	8.5e-06	25.7	0.1	3.0	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Cyclophil_like	PF04126.13	gi|296242689|ref|YP_003650176.1|	-	0.19	11.5	0.0	0.32	10.8	0.0	1.3	1	0	0	1	1	1	0	Cyclophilin-like
ABC_tran	PF00005.27	gi|296242690|ref|YP_003650177.1|	-	1.1e-27	97.2	0.0	1.6e-27	96.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|296242690|ref|YP_003650177.1|	-	1.5e-18	67.1	0.4	2.9e-18	66.1	0.4	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|296242690|ref|YP_003650177.1|	-	6.3e-06	26.2	0.9	0.00026	20.9	0.0	2.2	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|296242690|ref|YP_003650177.1|	-	2e-05	24.1	0.9	0.0022	17.5	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|296242690|ref|YP_003650177.1|	-	0.0027	17.4	0.0	0.005	16.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
TniB	PF05621.11	gi|296242690|ref|YP_003650177.1|	-	0.016	14.6	0.1	3.3	7.1	0.0	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
MMR_HSR1	PF01926.23	gi|296242690|ref|YP_003650177.1|	-	0.039	14.0	0.1	0.16	12.1	0.1	2.1	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|296242690|ref|YP_003650177.1|	-	0.096	13.0	0.3	0.53	10.5	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|296242690|ref|YP_003650177.1|	-	0.11	11.2	0.9	0.54	9.0	0.6	2.1	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|296242690|ref|YP_003650177.1|	-	0.12	12.7	0.1	0.23	11.9	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|296242690|ref|YP_003650177.1|	-	0.16	12.5	0.1	1.4	9.5	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|296242691|ref|YP_003650178.1|	-	5.4e-30	104.7	0.0	7.7e-30	104.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|296242691|ref|YP_003650178.1|	-	9.8e-17	61.2	0.1	1.6e-16	60.5	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|296242691|ref|YP_003650178.1|	-	1.9e-06	27.9	1.5	0.00036	20.4	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|296242691|ref|YP_003650178.1|	-	0.0066	16.2	0.2	0.013	15.2	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|296242691|ref|YP_003650178.1|	-	0.036	13.5	0.8	0.96	8.8	0.1	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|296242691|ref|YP_003650178.1|	-	0.038	14.4	0.2	0.057	13.8	0.2	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|296242691|ref|YP_003650178.1|	-	0.095	13.0	0.2	0.54	10.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Apolipoprotein	PF01442.18	gi|296242695|ref|YP_003650182.1|	-	0.0003	20.7	28.9	0.035	14.0	6.7	3.1	2	1	1	3	3	3	2	Apolipoprotein	A1/A4/E	domain
MscS_porin	PF12795.7	gi|296242695|ref|YP_003650182.1|	-	0.00036	20.2	8.2	0.00036	20.2	8.2	2.3	1	1	1	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
WXG100	PF06013.12	gi|296242695|ref|YP_003650182.1|	-	0.00084	19.5	1.8	0.53	10.6	0.0	3.6	3	0	0	3	3	3	1	Proteins	of	100	residues	with	WXG
NPV_P10	PF05531.12	gi|296242695|ref|YP_003650182.1|	-	0.002	18.6	12.5	0.044	14.3	1.5	4.3	1	1	3	4	4	4	1	Nucleopolyhedrovirus	P10	protein
CREPT	PF16566.5	gi|296242695|ref|YP_003650182.1|	-	0.0022	18.2	20.4	0.012	15.8	1.3	3.7	1	1	2	3	3	3	2	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Baculo_PEP_C	PF04513.12	gi|296242695|ref|YP_003650182.1|	-	0.0051	16.9	4.2	1	9.4	1.6	3.0	1	1	1	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
RRF	PF01765.19	gi|296242695|ref|YP_003650182.1|	-	0.0063	16.5	24.9	0.015	15.3	3.6	2.9	2	1	1	3	3	3	2	Ribosome	recycling	factor
ANAPC4	PF12896.7	gi|296242695|ref|YP_003650182.1|	-	0.007	15.9	3.9	0.029	13.9	0.2	2.7	2	1	0	2	2	2	1	Anaphase-promoting	complex,	cyclosome,	subunit	4
KxDL	PF10241.9	gi|296242695|ref|YP_003650182.1|	-	0.0077	16.5	14.5	2.1	8.7	0.1	4.4	1	1	4	5	5	5	1	Uncharacterized	conserved	protein
AAA_13	PF13166.6	gi|296242695|ref|YP_003650182.1|	-	0.046	12.4	28.3	0.16	10.6	12.9	2.2	1	1	1	2	2	2	0	AAA	domain
DUF948	PF06103.11	gi|296242695|ref|YP_003650182.1|	-	0.13	12.6	10.2	0.76	10.1	0.3	4.3	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
ApoO	PF09769.9	gi|296242695|ref|YP_003650182.1|	-	0.14	12.1	4.3	6.3	6.8	0.5	3.3	1	1	0	2	2	2	0	Apolipoprotein	O
ApoLp-III	PF07464.11	gi|296242695|ref|YP_003650182.1|	-	0.14	12.2	19.7	2.8	8.0	11.9	2.9	2	1	1	3	3	2	0	Apolipophorin-III	precursor	(apoLp-III)
Corona_S2	PF01601.16	gi|296242695|ref|YP_003650182.1|	-	0.17	10.4	0.5	1.9	6.8	0.5	2.0	2	0	0	2	2	2	0	Coronavirus	S2	glycoprotein
Exonuc_VII_L	PF02601.15	gi|296242695|ref|YP_003650182.1|	-	0.24	10.9	18.8	0.65	9.5	12.3	2.2	1	1	1	2	2	2	0	Exonuclease	VII,	large	subunit
Histidinol_dh	PF00815.20	gi|296242695|ref|YP_003650182.1|	-	0.27	10.2	8.6	0.55	9.2	3.8	2.2	2	0	0	2	2	2	0	Histidinol	dehydrogenase
FliJ	PF02050.16	gi|296242695|ref|YP_003650182.1|	-	0.31	11.3	23.4	0.18	12.0	3.1	3.9	1	1	2	4	4	4	0	Flagellar	FliJ	protein
DUF2362	PF10154.9	gi|296242695|ref|YP_003650182.1|	-	0.35	9.8	10.7	0.64	8.9	10.7	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2362)
Rootletin	PF15035.6	gi|296242695|ref|YP_003650182.1|	-	0.36	10.8	18.6	0.87	9.6	18.6	1.7	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
LXG	PF04740.12	gi|296242695|ref|YP_003650182.1|	-	0.39	10.4	16.0	0.5	10.1	2.5	3.3	1	1	0	3	3	3	0	LXG	domain	of	WXG	superfamily
DUF1664	PF07889.12	gi|296242695|ref|YP_003650182.1|	-	0.69	10.0	20.4	43	4.2	5.1	4.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
OmpH	PF03938.14	gi|296242695|ref|YP_003650182.1|	-	0.77	10.1	26.0	0.95	9.8	11.6	2.8	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
TPR_MLP1_2	PF07926.12	gi|296242695|ref|YP_003650182.1|	-	0.89	9.6	29.5	2.6	8.1	20.0	3.6	1	1	2	3	3	3	0	TPR/MLP1/MLP2-like	protein
DUF4142	PF13628.6	gi|296242695|ref|YP_003650182.1|	-	1.3	9.2	7.3	9	6.5	0.4	3.4	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4142)
AsnA	PF03590.15	gi|296242695|ref|YP_003650182.1|	-	1.4	8.6	11.4	0.48	10.1	1.5	2.4	1	1	1	2	2	2	0	Aspartate-ammonia	ligase
YlqD	PF11068.8	gi|296242695|ref|YP_003650182.1|	-	1.5	9.2	18.7	0.32	11.4	5.4	3.0	1	1	2	3	3	3	0	YlqD	protein
DUF4407	PF14362.6	gi|296242695|ref|YP_003650182.1|	-	1.5	8.1	19.0	1.5	8.1	9.9	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Nup54_57_C	PF18570.1	gi|296242695|ref|YP_003650182.1|	-	1.8	8.2	6.6	4.4	7.0	0.8	3.1	2	0	0	2	2	2	0	NUP57/Nup54	C-terminal	domain
Nup54	PF13874.6	gi|296242695|ref|YP_003650182.1|	-	2	8.5	16.4	5.3	7.2	4.5	3.1	1	1	0	2	2	2	0	Nucleoporin	complex	subunit	54
DUF3584	PF12128.8	gi|296242695|ref|YP_003650182.1|	-	2.1	5.7	27.0	6	4.2	27.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
MCPsignal	PF00015.21	gi|296242695|ref|YP_003650182.1|	-	2.2	8.1	10.9	1.9	8.3	2.3	2.8	1	1	2	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Prominin	PF05478.11	gi|296242695|ref|YP_003650182.1|	-	2.2	6.1	17.5	1.7	6.5	5.1	2.2	1	1	1	2	2	2	0	Prominin
DUF745	PF05335.13	gi|296242695|ref|YP_003650182.1|	-	2.3	7.9	16.4	0.94	9.2	6.9	2.8	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF745)
TINF2_N	PF14973.6	gi|296242695|ref|YP_003650182.1|	-	2.5	8.5	11.0	1.3	9.4	1.6	2.9	3	1	0	3	3	2	0	TERF1-interacting	nuclear	factor	2	N-terminus
Serine_rich	PF08824.10	gi|296242695|ref|YP_003650182.1|	-	2.5	8.1	9.5	39	4.2	6.7	3.0	1	1	1	2	2	2	0	Serine	rich	protein	interaction	domain
DUF2203	PF09969.9	gi|296242695|ref|YP_003650182.1|	-	2.9	8.6	21.1	26	5.6	3.7	3.7	2	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
FAM184	PF15665.5	gi|296242695|ref|YP_003650182.1|	-	3.3	7.4	28.6	8.8	6.0	28.6	1.9	1	1	0	1	1	1	0	Family	with	sequence	similarity	184,	A	and	B
RPW8	PF05659.11	gi|296242695|ref|YP_003650182.1|	-	3.4	7.3	15.4	0.15	11.8	2.7	3.6	2	2	0	3	3	3	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
DUF2680	PF10925.8	gi|296242695|ref|YP_003650182.1|	-	4.6	7.3	7.8	9.5	6.3	0.0	4.7	5	0	0	5	5	3	0	Protein	of	unknown	function	(DUF2680)
SOAR	PF16533.5	gi|296242695|ref|YP_003650182.1|	-	5.7	7.0	17.7	0.18	11.8	5.8	3.3	1	1	1	3	3	3	0	STIM1	Orai1-activating	region
DUF489	PF04356.12	gi|296242695|ref|YP_003650182.1|	-	6.5	6.7	8.9	6.1	6.8	0.2	3.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF489)
Bacillus_HBL	PF05791.11	gi|296242695|ref|YP_003650182.1|	-	8.2	6.2	12.7	4.3	7.1	2.5	2.9	2	1	1	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF2408	PF10303.9	gi|296242695|ref|YP_003650182.1|	-	8.4	7.0	21.4	96	3.5	21.4	2.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
CorA	PF01544.18	gi|296242695|ref|YP_003650182.1|	-	8.9	5.5	21.6	1.9	7.8	13.4	2.9	2	1	1	3	3	3	0	CorA-like	Mg2+	transporter	protein
Na_sulph_symp	PF00939.19	gi|296242696|ref|YP_003650183.1|	-	1.1e-71	242.3	39.3	1.5e-71	241.9	39.3	1.0	1	0	0	1	1	1	1	Sodium:sulfate	symporter	transmembrane	region
CitMHS	PF03600.16	gi|296242696|ref|YP_003650183.1|	-	9.3e-32	110.4	41.8	9.3e-32	110.4	41.8	2.2	1	1	1	2	2	2	2	Citrate	transporter
TrkH	PF02386.16	gi|296242697|ref|YP_003650184.1|	-	1.4e-49	168.9	21.8	2e-47	161.8	21.8	2.1	1	1	0	1	1	1	1	Cation	transport	protein
DUF4231	PF14015.6	gi|296242697|ref|YP_003650184.1|	-	1.8	9.1	3.7	49	4.5	0.2	3.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4231)
TrkA_N	PF02254.18	gi|296242698|ref|YP_003650185.1|	-	2.2e-14	53.7	1.0	3.2e-14	53.2	1.0	1.3	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|296242698|ref|YP_003650185.1|	-	4.4e-06	26.4	0.1	1.3e-05	25.0	0.1	1.8	1	0	0	1	1	1	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|296242698|ref|YP_003650185.1|	-	2.4e-05	24.7	0.2	3.8e-05	24.1	0.2	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|296242698|ref|YP_003650185.1|	-	0.0012	19.4	0.2	0.0026	18.3	0.2	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
LpxI_N	PF17930.1	gi|296242698|ref|YP_003650185.1|	-	0.0099	15.8	0.0	0.019	14.9	0.0	1.5	1	0	0	1	1	1	1	LpxI	N-terminal	domain
XdhC_C	PF13478.6	gi|296242698|ref|YP_003650185.1|	-	0.029	14.9	0.0	0.042	14.4	0.0	1.3	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Thg1	PF04446.12	gi|296242698|ref|YP_003650185.1|	-	0.12	12.4	0.0	0.88	9.6	0.0	2.1	3	0	0	3	3	3	0	tRNAHis	guanylyltransferase
MS_channel	PF00924.18	gi|296242699|ref|YP_003650186.1|	-	0.0012	18.4	1.5	0.0012	18.4	1.5	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
UPF0004	PF00919.20	gi|296242700|ref|YP_003650187.1|	-	9.9e-24	83.2	0.0	2.1e-23	82.2	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
Radical_SAM	PF04055.21	gi|296242700|ref|YP_003650187.1|	-	1.3e-23	84.2	0.3	1.9e-22	80.5	0.1	2.6	2	1	1	3	3	3	1	Radical	SAM	superfamily
TRAM	PF01938.20	gi|296242700|ref|YP_003650187.1|	-	0.0016	18.4	0.0	0.0043	17.0	0.0	1.7	1	0	0	1	1	1	1	TRAM	domain
Snf7	PF03357.21	gi|296242700|ref|YP_003650187.1|	-	0.053	13.1	0.0	0.086	12.4	0.0	1.3	1	0	0	1	1	1	0	Snf7
MAF_flag10	PF01973.18	gi|296242700|ref|YP_003650187.1|	-	0.16	11.7	0.0	0.41	10.3	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF115
eIF-5_eIF-2B	PF01873.17	gi|296242701|ref|YP_003650188.1|	-	1.2e-32	112.3	0.0	1.4e-32	112.0	0.0	1.1	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
Elf1	PF05129.13	gi|296242701|ref|YP_003650188.1|	-	0.0045	17.0	1.1	0.0073	16.3	1.1	1.3	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
zf-RING_7	PF02591.15	gi|296242701|ref|YP_003650188.1|	-	0.005	17.0	0.1	1.1	9.5	0.0	2.6	2	0	0	2	2	2	1	C4-type	zinc	ribbon	domain
IBR	PF01485.21	gi|296242701|ref|YP_003650188.1|	-	0.0056	16.9	0.2	0.0085	16.3	0.2	1.2	1	0	0	1	1	1	1	IBR	domain,	a	half	RING-finger	domain
PhnA_Zn_Ribbon	PF08274.12	gi|296242701|ref|YP_003650188.1|	-	0.0066	16.4	0.4	4.6	7.3	0.1	2.4	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
DUF35_N	PF12172.8	gi|296242701|ref|YP_003650188.1|	-	0.0071	16.2	1.4	0.39	10.7	0.1	2.3	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-TFIIB	PF13453.6	gi|296242701|ref|YP_003650188.1|	-	0.0093	15.3	0.8	0.016	14.5	0.8	1.4	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
zf-ribbon_3	PF13248.6	gi|296242701|ref|YP_003650188.1|	-	0.014	14.8	0.6	0.18	11.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|296242701|ref|YP_003650188.1|	-	0.015	15.2	1.1	0.029	14.3	1.1	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.6	gi|296242701|ref|YP_003650188.1|	-	0.018	15.4	1.0	0.036	14.4	1.0	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DpnI	PF06044.12	gi|296242701|ref|YP_003650188.1|	-	0.031	13.9	0.0	0.048	13.3	0.0	1.3	1	0	0	1	1	1	0	Dam-replacing	family
Zn-ribbon_8	PF09723.10	gi|296242701|ref|YP_003650188.1|	-	0.038	14.1	2.5	5.3	7.3	0.1	2.3	1	1	0	2	2	2	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|296242701|ref|YP_003650188.1|	-	0.057	13.5	0.1	0.081	12.9	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF3797	PF12677.7	gi|296242701|ref|YP_003650188.1|	-	0.057	13.3	1.6	0.063	13.2	0.4	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-RRN7	PF11781.8	gi|296242701|ref|YP_003650188.1|	-	0.098	12.4	0.5	4.6	7.0	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
CpXC	PF14353.6	gi|296242701|ref|YP_003650188.1|	-	0.13	12.3	2.8	0.7	10.0	0.1	2.3	1	1	1	2	2	2	0	CpXC	protein
zf-ACC	PF17848.1	gi|296242701|ref|YP_003650188.1|	-	0.17	12.0	1.9	4.8	7.4	0.1	2.4	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-NADH-PPase	PF09297.11	gi|296242701|ref|YP_003650188.1|	-	0.5	10.1	5.0	8.5	6.1	5.0	2.3	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|296242701|ref|YP_003650188.1|	-	0.68	9.7	2.5	9.9	6.0	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-CCHC_6	PF15288.6	gi|296242701|ref|YP_003650188.1|	-	1.1	9.1	5.1	5	7.0	0.3	2.3	2	0	0	2	2	2	0	Zinc	knuckle
zinc_ribbon_2	PF13240.6	gi|296242701|ref|YP_003650188.1|	-	1.2	9.0	4.6	59	3.6	4.6	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|296242701|ref|YP_003650188.1|	-	1.2	9.2	4.8	29	4.7	4.7	2.4	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|296242701|ref|YP_003650188.1|	-	1.3	8.9	4.7	1.6	8.6	0.4	2.4	1	1	1	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Nudix_N_2	PF14803.6	gi|296242701|ref|YP_003650188.1|	-	2.9	7.9	5.4	12	6.0	0.8	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
Auto_anti-p27	PF06677.12	gi|296242701|ref|YP_003650188.1|	-	4.3	7.6	5.4	7.7	6.8	1.5	2.4	2	1	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF424	PF04242.13	gi|296242702|ref|YP_003650189.1|	-	2e-19	69.6	0.2	2.3e-19	69.4	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
NTP_transf_3	PF12804.7	gi|296242702|ref|YP_003650189.1|	-	0.016	15.6	0.0	0.019	15.3	0.0	1.2	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
NMD3	PF04981.13	gi|296242703|ref|YP_003650190.1|	-	9.3e-45	153.0	0.1	1.2e-44	152.7	0.1	1.1	1	0	0	1	1	1	1	NMD3	family
DUF35_N	PF12172.8	gi|296242703|ref|YP_003650190.1|	-	0.024	14.5	0.0	0.024	14.5	0.0	3.2	3	1	1	4	4	4	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_2	PF13240.6	gi|296242703|ref|YP_003650190.1|	-	0.042	13.6	9.4	1	9.2	1.6	3.4	3	1	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.7	gi|296242703|ref|YP_003650190.1|	-	0.059	13.4	3.6	0.24	11.4	2.0	2.5	2	1	0	2	2	2	0	Double	zinc	ribbon
CxC4	PF18717.1	gi|296242703|ref|YP_003650190.1|	-	0.093	12.6	2.0	7.7	6.4	0.8	2.3	2	0	0	2	2	2	0	CxC4	like	cysteine	cluster	associated	with	KDZ	transposases
zf-TFIIB	PF13453.6	gi|296242703|ref|YP_003650190.1|	-	0.17	11.3	1.9	0.48	9.8	0.4	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-ribbon_3	PF13248.6	gi|296242703|ref|YP_003650190.1|	-	0.48	9.9	10.8	2.3	7.7	0.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|296242703|ref|YP_003650190.1|	-	0.53	10.0	4.7	7	6.4	0.0	2.8	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
C1_1	PF00130.22	gi|296242703|ref|YP_003650190.1|	-	2.1	8.3	4.0	0.8	9.6	0.9	1.8	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf_UBZ	PF18439.1	gi|296242703|ref|YP_003650190.1|	-	9	6.0	6.5	5.2	6.7	0.1	2.7	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
eIF-1a	PF01176.19	gi|296242704|ref|YP_003650191.1|	-	7.3e-19	67.3	0.3	8.9e-19	67.1	0.3	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
RIO1	PF01163.22	gi|296242705|ref|YP_003650192.1|	-	9.5e-60	201.4	0.0	1.3e-59	200.9	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|296242705|ref|YP_003650192.1|	-	1.5e-08	34.9	0.0	4e-05	23.7	0.0	2.9	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|296242705|ref|YP_003650192.1|	-	0.00041	19.8	0.0	0.0013	18.1	0.0	1.9	1	1	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.14	gi|296242705|ref|YP_003650192.1|	-	0.0033	16.8	0.2	0.038	13.4	0.2	2.1	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase_fungal	PF17667.1	gi|296242705|ref|YP_003650192.1|	-	0.089	11.5	0.1	0.13	11.1	0.1	1.2	1	0	0	1	1	1	0	Fungal	protein	kinase
KH_1	PF00013.29	gi|296242706|ref|YP_003650193.1|	-	6.1e-11	42.0	0.7	2.6e-05	24.0	0.1	2.4	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.17	gi|296242706|ref|YP_003650193.1|	-	0.0026	17.5	2.3	0.11	12.3	0.6	2.6	2	0	0	2	2	2	2	KH	domain
EamA	PF00892.20	gi|296242707|ref|YP_003650194.1|	-	5e-20	72.1	17.6	5.5e-20	71.9	17.6	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
DMT_6	PF04342.12	gi|296242707|ref|YP_003650194.1|	-	0.019	15.2	1.2	0.019	15.2	1.2	2.3	2	0	0	2	2	2	0	Putative	member	of	DMT	superfamily	(DUF486)
SLC35F	PF06027.12	gi|296242707|ref|YP_003650194.1|	-	0.036	13.6	10.3	0.042	13.4	10.3	1.0	1	0	0	1	1	1	0	Solute	carrier	family	35
TPT	PF03151.16	gi|296242707|ref|YP_003650194.1|	-	0.046	13.0	10.6	0.061	12.7	10.6	1.1	1	0	0	1	1	1	0	Triose-phosphate	Transporter	family
Peptidase_U4	PF03419.13	gi|296242707|ref|YP_003650194.1|	-	0.62	9.3	12.0	0.87	8.8	12.0	1.3	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
DUF4271	PF14093.6	gi|296242708|ref|YP_003650195.1|	-	1.1	9.2	14.1	6.1	6.7	13.9	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4271)
DNA_RNApol_7kD	PF03604.13	gi|296242709|ref|YP_003650196.1|	-	0.064	12.9	2.5	0.43	10.3	2.5	2.1	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DZR	PF12773.7	gi|296242709|ref|YP_003650196.1|	-	0.16	12.0	0.5	0.28	11.3	0.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-CRD	PF17979.1	gi|296242709|ref|YP_003650196.1|	-	0.18	11.9	0.1	0.34	11.0	0.1	1.4	1	0	0	1	1	1	0	Cysteine	rich	domain	with	multizinc	binding	regions
zinc_ribbon_2	PF13240.6	gi|296242709|ref|YP_003650196.1|	-	0.3	10.9	5.6	3.4	7.5	5.6	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Leuk-A4-hydro_C	PF09127.11	gi|296242710|ref|YP_003650197.1|	-	0.00071	19.6	0.4	0.0039	17.2	0.2	2.1	2	0	0	2	2	2	1	Leukotriene	A4	hydrolase,	C-terminal
TPR_12	PF13424.6	gi|296242710|ref|YP_003650197.1|	-	0.0018	18.5	2.3	0.18	12.1	0.0	3.5	4	0	0	4	4	4	1	Tetratricopeptide	repeat
MIT	PF04212.18	gi|296242710|ref|YP_003650197.1|	-	0.0049	16.9	2.2	0.068	13.2	0.0	3.0	3	0	0	3	3	3	1	MIT	(microtubule	interacting	and	transport)	domain
DUF3884	PF13024.6	gi|296242710|ref|YP_003650197.1|	-	0.036	13.6	0.0	0.11	12.1	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3884)
DUF1769	PF08588.10	gi|296242710|ref|YP_003650197.1|	-	0.071	13.3	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1769)
TPR_2	PF07719.17	gi|296242710|ref|YP_003650197.1|	-	0.1	12.8	8.5	0.77	10.0	0.0	4.1	4	0	0	4	4	4	0	Tetratricopeptide	repeat
Band_7_1	PF13421.6	gi|296242711|ref|YP_003650198.1|	-	6.5e-33	114.2	0.0	9.5e-33	113.7	0.0	1.2	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
Band_7	PF01145.25	gi|296242711|ref|YP_003650198.1|	-	1.1e-16	61.4	0.1	2e-16	60.5	0.1	1.4	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
SHOCT	PF09851.9	gi|296242711|ref|YP_003650198.1|	-	8.2e-08	31.8	6.5	1.9e-07	30.6	6.5	1.7	1	0	0	1	1	1	1	Short	C-terminal	domain
DMAP_binding	PF06464.11	gi|296242711|ref|YP_003650198.1|	-	0.00012	22.9	1.0	0.00019	22.2	1.0	1.3	1	0	0	1	1	1	1	DMAP1-binding	Domain
GvpG	PF05120.12	gi|296242711|ref|YP_003650198.1|	-	0.00063	19.7	3.3	0.0021	18.0	0.9	2.3	2	0	0	2	2	2	1	Gas	vesicle	protein	G
TRPM_tetra	PF16519.5	gi|296242712|ref|YP_003650199.1|	-	0.0089	16.1	0.3	3	8.0	0.5	2.3	2	0	0	2	2	2	2	Tetramerisation	domain	of	TRPM
Syntaxin_2	PF14523.6	gi|296242712|ref|YP_003650199.1|	-	0.037	14.4	0.2	5.4	7.4	0.1	2.2	2	0	0	2	2	2	0	Syntaxin-like	protein
PSII_Pbs27	PF13326.6	gi|296242712|ref|YP_003650199.1|	-	0.054	13.8	0.4	0.15	12.3	0.1	1.8	2	0	0	2	2	2	0	Photosystem	II	Pbs27
RPW8	PF05659.11	gi|296242712|ref|YP_003650199.1|	-	0.11	12.2	1.2	0.31	10.7	0.2	1.9	2	1	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Takusan	PF04822.13	gi|296242712|ref|YP_003650199.1|	-	0.31	11.0	2.6	0.67	9.9	0.3	2.4	2	1	0	2	2	2	0	Takusan
tRNA-synt_2c	PF01411.19	gi|296242714|ref|YP_003650201.1|	-	3.3e-10	39.1	0.0	4.4e-10	38.7	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|296242714|ref|YP_003650201.1|	-	1.5e-06	28.2	0.2	2.9e-06	27.3	0.2	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
ABC2_membrane_2	PF12679.7	gi|296242715|ref|YP_003650202.1|	-	4.9e-13	49.0	23.6	1.9e-12	47.1	23.6	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|296242716|ref|YP_003650203.1|	-	6.3e-21	75.3	0.0	9.7e-21	74.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242716|ref|YP_003650203.1|	-	2e-07	31.2	0.1	2.4e-05	24.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
EamA	PF00892.20	gi|296242717|ref|YP_003650204.1|	-	7e-33	113.7	38.6	1.6e-17	63.9	15.3	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
CRT-like	PF08627.10	gi|296242717|ref|YP_003650204.1|	-	0.027	13.5	11.9	0.017	14.1	1.6	2.1	1	1	0	2	2	2	0	CRT-like,	chloroquine-resistance	transporter-like
TMEM234	PF10639.9	gi|296242717|ref|YP_003650204.1|	-	0.14	12.2	10.0	0.058	13.4	1.5	3.2	3	0	0	3	3	3	0	Putative	transmembrane	family	234
KH_5	PF13184.6	gi|296242718|ref|YP_003650205.1|	-	8.6e-05	22.5	0.2	0.00026	21.0	0.0	1.9	2	0	0	2	2	2	1	NusA-like	KH	domain
Ribosomal_S7e	PF01251.18	gi|296242718|ref|YP_003650205.1|	-	0.00035	20.4	0.5	0.01	15.6	0.0	2.3	1	1	1	2	2	2	1	Ribosomal	protein	S7e
GbpA_2	PF18416.1	gi|296242718|ref|YP_003650205.1|	-	0.038	14.3	0.0	0.058	13.7	0.0	1.4	1	1	0	1	1	1	0	N-acetylglucosamine	binding	protein	domain	2
IGPS	PF00218.21	gi|296242718|ref|YP_003650205.1|	-	0.046	12.9	0.4	0.084	12.0	0.3	1.4	1	1	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
Herpes_UL31	PF02718.14	gi|296242718|ref|YP_003650205.1|	-	0.086	11.8	0.0	0.11	11.5	0.0	1.1	1	0	0	1	1	1	0	Herpesvirus	UL31-like	protein
CRS1_YhbY	PF01985.21	gi|296242718|ref|YP_003650205.1|	-	0.13	12.5	1.4	1.7	8.9	1.4	2.3	1	1	0	1	1	1	0	CRS1	/	YhbY	(CRM)	domain
TruD	PF01142.18	gi|296242719|ref|YP_003650206.1|	-	6.8e-45	153.6	0.0	3.4e-40	138.2	0.0	2.5	2	1	0	2	2	2	2	tRNA	pseudouridine	synthase	D	(TruD)
PTH2	PF01981.16	gi|296242720|ref|YP_003650207.1|	-	1.3e-41	141.5	0.0	1.4e-41	141.4	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
HSP20	PF00011.21	gi|296242721|ref|YP_003650208.1|	-	0.07	13.3	0.0	0.12	12.6	0.0	1.3	1	0	0	1	1	1	0	Hsp20/alpha	crystallin	family
DUF1610	PF07754.11	gi|296242722|ref|YP_003650209.1|	-	1.2e-10	41.1	5.5	4.2e-06	26.6	1.7	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
zf-CHY	PF05495.12	gi|296242722|ref|YP_003650209.1|	-	0.00029	21.3	7.8	0.0004	20.8	7.8	1.3	1	1	0	1	1	1	1	CHY	zinc	finger
DZR	PF12773.7	gi|296242722|ref|YP_003650209.1|	-	0.00085	19.3	13.8	0.046	13.8	14.1	2.5	1	1	1	2	2	2	2	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|296242722|ref|YP_003650209.1|	-	0.0016	18.3	9.3	0.0055	16.6	0.4	2.2	1	1	1	2	2	2	1	Putative	transposase	DNA-binding	domain
HypA	PF01155.19	gi|296242722|ref|YP_003650209.1|	-	0.003	17.6	9.6	0.0092	16.0	0.2	2.0	1	1	1	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1272	PF06906.11	gi|296242722|ref|YP_003650209.1|	-	0.0042	17.1	11.8	0.039	14.0	1.8	2.9	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1272)
tRNA-synt_1f	PF01921.18	gi|296242722|ref|YP_003650209.1|	-	0.012	14.5	2.0	0.018	13.9	2.0	1.5	1	1	0	1	1	1	0	tRNA	synthetases	class	I	(K)
zf-ribbon_3	PF13248.6	gi|296242722|ref|YP_003650209.1|	-	0.054	12.9	14.5	0.11	11.9	0.5	3.3	3	1	0	3	3	3	0	zinc-ribbon	domain
Nop10p	PF04135.12	gi|296242722|ref|YP_003650209.1|	-	0.075	13.1	7.5	0.15	12.1	1.6	2.4	1	1	1	2	2	2	0	Nucleolar	RNA-binding	protein,	Nop10p	family
PolC_DP2	PF03833.13	gi|296242722|ref|YP_003650209.1|	-	0.08	10.8	3.9	0.079	10.8	3.9	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
PSCyt3	PF07627.11	gi|296242722|ref|YP_003650209.1|	-	0.092	13.0	0.1	0.092	13.0	0.1	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1588)
zf-RING_7	PF02591.15	gi|296242722|ref|YP_003650209.1|	-	0.12	12.6	11.7	2.8	8.2	0.1	3.4	3	1	0	3	3	3	0	C4-type	zinc	ribbon	domain
Acetone_carb_G	PF08882.11	gi|296242722|ref|YP_003650209.1|	-	0.14	12.3	3.8	5.2	7.3	0.2	2.3	1	1	1	2	2	2	0	Acetone	carboxylase	gamma	subunit
zinc_ribbon_10	PF10058.9	gi|296242722|ref|YP_003650209.1|	-	0.2	11.4	13.4	2.1	8.2	2.1	3.4	2	2	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-Mss51	PF13824.6	gi|296242722|ref|YP_003650209.1|	-	0.38	10.9	10.3	1.1	9.4	2.1	2.3	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF2321	PF10083.9	gi|296242722|ref|YP_003650209.1|	-	0.38	10.4	4.9	0.092	12.4	2.0	1.5	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
C1_2	PF03107.16	gi|296242722|ref|YP_003650209.1|	-	0.41	11.0	10.6	0.92	9.9	2.9	2.2	1	1	1	2	2	2	0	C1	domain
zinc_ribbon_2	PF13240.6	gi|296242722|ref|YP_003650209.1|	-	0.42	10.4	15.8	0.65	9.8	0.3	3.6	3	1	0	3	3	3	0	zinc-ribbon	domain
DUF1258	PF06869.12	gi|296242722|ref|YP_003650209.1|	-	0.57	9.6	3.7	0.7	9.3	3.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1258)
Zn-ribbon_8	PF09723.10	gi|296242722|ref|YP_003650209.1|	-	0.93	9.7	17.1	0.84	9.8	2.8	3.5	1	1	2	3	3	3	0	Zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|296242722|ref|YP_003650209.1|	-	1.1	9.3	14.0	6.7	6.7	0.0	4.1	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-MYND	PF01753.18	gi|296242722|ref|YP_003650209.1|	-	1.1	9.4	11.8	3.2	7.9	0.3	2.5	1	1	2	3	3	3	0	MYND	finger
zf-LITAF-like	PF10601.9	gi|296242722|ref|YP_003650209.1|	-	1.2	9.5	12.1	5.2	7.4	0.6	3.4	2	1	1	3	3	3	0	LITAF-like	zinc	ribbon	domain
zf-UDP	PF14569.6	gi|296242722|ref|YP_003650209.1|	-	1.3	9.2	9.3	2.3	8.4	9.4	1.4	1	1	0	1	1	1	0	Zinc-binding	RING-finger
NOB1_Zn_bind	PF08772.11	gi|296242722|ref|YP_003650209.1|	-	1.3	9.3	9.9	0.23	11.6	3.3	2.2	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf_C2H2_10	PF18414.1	gi|296242722|ref|YP_003650209.1|	-	1.4	8.6	8.9	3.6	7.2	0.3	2.7	3	0	0	3	3	2	0	C2H2	type	zinc-finger
zf_UBZ	PF18439.1	gi|296242722|ref|YP_003650209.1|	-	1.6	8.4	14.4	8.9	6.0	0.2	4.0	2	1	2	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
Rpr2	PF04032.16	gi|296242722|ref|YP_003650209.1|	-	2.2	8.6	10.5	77	3.7	10.5	3.0	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
TF_Zn_Ribbon	PF08271.12	gi|296242722|ref|YP_003650209.1|	-	3.5	7.2	18.9	0.26	10.8	0.6	3.6	1	1	2	3	3	3	0	TFIIB	zinc-binding
ADK_lid	PF05191.14	gi|296242722|ref|YP_003650209.1|	-	3.7	7.6	11.3	40	4.3	0.3	3.3	2	1	1	3	3	3	0	Adenylate	kinase,	active	site	lid
zf-B_box	PF00643.24	gi|296242722|ref|YP_003650209.1|	-	3.9	7.7	14.0	1.8	8.8	2.8	2.7	1	1	1	2	2	2	0	B-box	zinc	finger
zf-H2C2_2	PF13465.6	gi|296242722|ref|YP_003650209.1|	-	4.9	7.8	10.6	10	6.7	0.1	3.3	3	1	0	3	3	3	0	Zinc-finger	double	domain
Sgf11	PF08209.11	gi|296242722|ref|YP_003650209.1|	-	5.8	6.6	15.9	2.2	7.9	0.1	3.7	3	1	1	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
Zn_Tnp_IS91	PF14319.6	gi|296242722|ref|YP_003650209.1|	-	7	6.8	10.2	11	6.2	0.9	2.2	1	1	1	2	2	2	0	Transposase	zinc-binding	domain
Nudix_N_2	PF14803.6	gi|296242722|ref|YP_003650209.1|	-	9.1	6.3	16.3	4.3	7.3	0.2	3.7	1	1	2	3	3	3	0	Nudix	N-terminal
zf-HIT	PF04438.16	gi|296242722|ref|YP_003650209.1|	-	9.2	6.2	15.8	4.6	7.2	6.1	3.1	2	2	0	2	2	2	0	HIT	zinc	finger
EF1_GNE	PF00736.19	gi|296242723|ref|YP_003650210.1|	-	2.3e-18	66.1	0.0	2.6e-18	66.0	0.0	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
AAA	PF00004.29	gi|296242724|ref|YP_003650211.1|	-	5.3e-97	321.3	0.0	1.8e-48	164.3	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|296242724|ref|YP_003650211.1|	-	1.8e-35	120.4	0.1	9.1e-18	63.8	0.2	2.6	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|296242724|ref|YP_003650211.1|	-	3.2e-22	78.5	0.3	8.4e-22	77.2	0.3	1.8	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_16	PF13191.6	gi|296242724|ref|YP_003650211.1|	-	5.6e-16	59.4	0.2	4.8e-07	30.3	0.0	4.3	2	2	0	3	3	3	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|296242724|ref|YP_003650211.1|	-	2.5e-14	53.7	0.0	1.9e-07	31.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|296242724|ref|YP_003650211.1|	-	4.8e-14	52.4	0.0	6.6e-06	26.0	0.0	3.0	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|296242724|ref|YP_003650211.1|	-	3.9e-13	49.6	0.5	4.9e-05	23.4	0.1	3.5	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|296242724|ref|YP_003650211.1|	-	8.3e-11	42.3	1.1	0.00044	20.5	0.1	4.0	2	2	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|296242724|ref|YP_003650211.1|	-	1e-10	41.4	0.0	0.00028	20.2	0.0	2.5	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|296242724|ref|YP_003650211.1|	-	1.6e-10	41.3	0.0	1.9e-05	24.8	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|296242724|ref|YP_003650211.1|	-	6.2e-10	39.2	0.0	0.00091	19.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|296242724|ref|YP_003650211.1|	-	8.6e-09	36.0	0.0	0.0022	18.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|296242724|ref|YP_003650211.1|	-	1.3e-08	34.8	0.0	0.0023	17.7	0.0	2.7	3	0	0	3	3	2	2	IstB-like	ATP	binding	protein
CDC48_2	PF02933.17	gi|296242724|ref|YP_003650211.1|	-	1.4e-08	34.4	0.2	3.1e-08	33.3	0.2	1.6	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_28	PF13521.6	gi|296242724|ref|YP_003650211.1|	-	2.6e-08	34.3	0.0	0.0023	18.2	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|296242724|ref|YP_003650211.1|	-	4.5e-08	33.4	0.0	0.015	15.7	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_24	PF13479.6	gi|296242724|ref|YP_003650211.1|	-	8.1e-08	32.2	0.0	0.0067	16.2	0.0	2.9	2	2	0	2	2	2	2	AAA	domain
ATPase_2	PF01637.18	gi|296242724|ref|YP_003650211.1|	-	6.8e-07	29.4	4.1	0.23	11.3	0.0	3.9	3	2	1	4	4	3	3	ATPase	domain	predominantly	from	Archaea
DUF815	PF05673.13	gi|296242724|ref|YP_003650211.1|	-	7e-07	28.7	0.0	0.012	14.8	0.0	2.7	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Mg_chelatase	PF01078.21	gi|296242724|ref|YP_003650211.1|	-	7.2e-07	28.8	2.9	0.021	14.2	0.1	2.8	3	0	0	3	3	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|296242724|ref|YP_003650211.1|	-	3.4e-06	26.9	0.2	0.12	12.0	0.0	3.5	2	2	0	2	2	2	2	Sigma-54	interaction	domain
ABC_tran	PF00005.27	gi|296242724|ref|YP_003650211.1|	-	4.9e-06	27.1	0.0	0.071	13.6	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
Zeta_toxin	PF06414.12	gi|296242724|ref|YP_003650211.1|	-	5e-06	25.9	0.0	0.058	12.7	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
TsaE	PF02367.17	gi|296242724|ref|YP_003650211.1|	-	1.3e-05	25.2	0.0	0.18	11.8	0.0	2.6	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|296242724|ref|YP_003650211.1|	-	1.9e-05	24.6	0.3	0.44	10.5	0.1	3.2	3	0	0	3	3	3	2	NACHT	domain
AAA_7	PF12775.7	gi|296242724|ref|YP_003650211.1|	-	2.5e-05	23.9	0.0	0.05	13.1	0.0	2.6	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
Parvo_NS1	PF01057.17	gi|296242724|ref|YP_003650211.1|	-	3.1e-05	23.2	0.1	0.036	13.1	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
ATPase	PF06745.13	gi|296242724|ref|YP_003650211.1|	-	3.2e-05	23.4	1.1	0.31	10.3	0.0	3.8	3	1	1	4	4	4	2	KaiC
Vps4_C	PF09336.10	gi|296242724|ref|YP_003650211.1|	-	8.4e-05	22.5	0.2	0.0084	16.1	0.0	2.9	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_3	PF07726.11	gi|296242724|ref|YP_003650211.1|	-	0.00014	21.7	0.0	0.58	10.0	0.0	2.7	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.6	gi|296242724|ref|YP_003650211.1|	-	0.00021	21.7	0.0	1.1	9.7	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.16	gi|296242724|ref|YP_003650211.1|	-	0.00023	20.7	0.1	0.47	9.9	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
Rad17	PF03215.15	gi|296242724|ref|YP_003650211.1|	-	0.00025	21.0	0.0	0.4	10.6	0.0	3.1	2	1	1	3	3	3	1	Rad17	P-loop	domain
Viral_helicase1	PF01443.18	gi|296242724|ref|YP_003650211.1|	-	0.00025	20.9	0.0	0.035	13.8	0.0	2.2	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
NB-ARC	PF00931.22	gi|296242724|ref|YP_003650211.1|	-	0.00067	18.9	0.0	1.1	8.4	0.0	2.4	2	0	0	2	2	2	2	NB-ARC	domain
DUF2075	PF09848.9	gi|296242724|ref|YP_003650211.1|	-	0.00068	19.0	0.0	0.059	12.6	0.0	2.2	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
Bac_DnaA	PF00308.18	gi|296242724|ref|YP_003650211.1|	-	0.001	18.9	0.0	0.61	9.9	0.0	2.7	2	1	0	2	2	2	1	Bacterial	dnaA	protein
AAA_25	PF13481.6	gi|296242724|ref|YP_003650211.1|	-	0.0016	18.0	10.0	0.68	9.5	0.8	4.3	3	2	1	4	4	3	2	AAA	domain
Sigma54_activ_2	PF14532.6	gi|296242724|ref|YP_003650211.1|	-	0.0041	17.2	0.0	3.5	7.7	0.0	2.7	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|296242724|ref|YP_003650211.1|	-	0.0042	16.9	0.0	0.77	9.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
ATP-synt_ab	PF00006.25	gi|296242724|ref|YP_003650211.1|	-	0.0044	16.7	0.0	3.6	7.2	0.0	2.3	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
PduV-EutP	PF10662.9	gi|296242724|ref|YP_003650211.1|	-	0.0053	16.5	0.0	2.7	7.7	0.0	2.4	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AFG1_ATPase	PF03969.16	gi|296242724|ref|YP_003650211.1|	-	0.0073	15.2	0.0	0.85	8.4	0.0	2.3	2	0	0	2	2	2	1	AFG1-like	ATPase
AAA_30	PF13604.6	gi|296242724|ref|YP_003650211.1|	-	0.009	15.7	0.0	1.5	8.5	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
ResIII	PF04851.15	gi|296242724|ref|YP_003650211.1|	-	0.0098	15.9	0.0	1.3	9.1	0.0	2.5	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|296242724|ref|YP_003650211.1|	-	0.013	15.8	3.0	4.5	7.6	0.1	3.3	2	2	1	3	3	3	0	AAA	domain
IPT	PF01745.16	gi|296242724|ref|YP_003650211.1|	-	0.023	14.1	0.1	7.4	5.9	0.0	2.4	2	0	0	2	2	2	0	Isopentenyl	transferase
T2SSE	PF00437.20	gi|296242724|ref|YP_003650211.1|	-	0.025	13.6	0.0	0.84	8.6	0.0	2.5	2	1	0	2	2	2	0	Type	II/IV	secretion	system	protein
DAP3	PF10236.9	gi|296242724|ref|YP_003650211.1|	-	0.026	13.7	0.0	4	6.5	0.0	2.3	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
KAP_NTPase	PF07693.14	gi|296242724|ref|YP_003650211.1|	-	0.026	13.8	0.1	12	5.0	0.1	3.2	2	1	1	3	3	3	0	KAP	family	P-loop	domain
Cytidylate_kin	PF02224.18	gi|296242724|ref|YP_003650211.1|	-	0.029	14.1	0.0	8.5	6.0	0.0	2.6	2	0	0	2	2	2	0	Cytidylate	kinase
Guanylate_kin	PF00625.21	gi|296242724|ref|YP_003650211.1|	-	0.029	14.0	0.1	24	4.6	0.0	3.9	2	2	2	4	4	4	0	Guanylate	kinase
SKI	PF01202.22	gi|296242724|ref|YP_003650211.1|	-	0.031	14.4	0.0	9.3	6.4	0.0	2.6	2	0	0	2	2	2	0	Shikimate	kinase
Pept_tRNA_hydro	PF01195.19	gi|296242724|ref|YP_003650211.1|	-	0.032	14.2	0.0	0.55	10.2	0.0	2.6	3	0	0	3	3	3	0	Peptidyl-tRNA	hydrolase
NTPase_1	PF03266.15	gi|296242724|ref|YP_003650211.1|	-	0.051	13.5	0.1	23	4.8	0.0	3.3	2	1	1	3	3	3	0	NTPase
KTI12	PF08433.10	gi|296242724|ref|YP_003650211.1|	-	0.056	12.9	0.0	3	7.2	0.0	2.9	3	0	0	3	3	3	0	Chromatin	associated	protein	KTI12
AAA_23	PF13476.6	gi|296242724|ref|YP_003650211.1|	-	0.081	13.4	0.1	6.2	7.3	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.19	gi|296242724|ref|YP_003650211.1|	-	0.091	12.3	0.1	12	5.5	0.0	2.4	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_29	PF13555.6	gi|296242724|ref|YP_003650211.1|	-	0.099	12.4	0.0	14	5.5	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_6	PF12774.7	gi|296242724|ref|YP_003650211.1|	-	0.12	11.3	0.0	0.53	9.2	0.0	1.9	2	0	0	2	2	2	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
SRPRB	PF09439.10	gi|296242724|ref|YP_003650211.1|	-	0.13	11.6	0.0	16	4.9	0.0	2.3	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
PadR	PF03551.14	gi|296242725|ref|YP_003650212.1|	-	0.0075	16.2	0.1	0.0099	15.8	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|296242725|ref|YP_003650212.1|	-	0.028	14.3	0.0	0.037	13.9	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TBPIP	PF07106.13	gi|296242725|ref|YP_003650212.1|	-	0.04	13.9	0.0	0.048	13.6	0.0	1.1	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
FUR	PF01475.19	gi|296242725|ref|YP_003650212.1|	-	0.058	13.5	0.0	0.068	13.3	0.0	1.0	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
DprA_WH	PF17782.1	gi|296242725|ref|YP_003650212.1|	-	0.13	12.4	0.0	0.19	11.8	0.0	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
HTH_20	PF12840.7	gi|296242725|ref|YP_003650212.1|	-	0.14	12.2	0.0	0.17	11.9	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
XPG_I	PF00867.18	gi|296242726|ref|YP_003650213.1|	-	8.4e-26	90.2	0.0	1.5e-25	89.3	0.0	1.4	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.17	gi|296242726|ref|YP_003650213.1|	-	1.8e-19	70.1	0.0	3.4e-19	69.2	0.0	1.5	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|296242726|ref|YP_003650213.1|	-	0.0001	22.8	0.1	0.00044	20.8	0.1	2.1	1	1	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
DSX_dimer	PF08828.10	gi|296242726|ref|YP_003650213.1|	-	0.033	13.9	0.1	0.073	12.7	0.1	1.6	1	0	0	1	1	1	0	Doublesex	dimerisation	domain
HHH_2	PF12826.7	gi|296242726|ref|YP_003650213.1|	-	0.092	12.9	0.0	0.39	10.9	0.0	2.0	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
Cytochrom_B561	PF03188.16	gi|296242727|ref|YP_003650214.1|	-	0.0059	16.7	0.0	0.0061	16.7	0.0	1.1	1	0	0	1	1	1	1	Eukaryotic	cytochrome	b561
NADH-u_ox-rdase	PF10785.9	gi|296242727|ref|YP_003650214.1|	-	0.074	13.7	0.0	0.095	13.4	0.0	1.2	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase	complex	I,	21	kDa	subunit
DUF5325	PF17259.2	gi|296242727|ref|YP_003650214.1|	-	0.098	12.6	2.3	0.12	12.2	0.0	1.9	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5325)
DUF202	PF02656.15	gi|296242727|ref|YP_003650214.1|	-	0.15	12.5	2.9	0.29	11.6	2.9	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
PCMT	PF01135.19	gi|296242728|ref|YP_003650215.1|	-	3.8e-67	226.1	0.0	4.6e-67	225.8	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|296242728|ref|YP_003650215.1|	-	9.7e-08	31.9	0.0	1.2e-07	31.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.10	gi|296242728|ref|YP_003650215.1|	-	2.5e-06	27.4	0.0	3.4e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_24	PF13578.6	gi|296242728|ref|YP_003650215.1|	-	2.9e-05	25.1	0.0	4.4e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296242728|ref|YP_003650215.1|	-	0.00011	22.8	0.0	0.00016	22.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|296242728|ref|YP_003650215.1|	-	0.00014	21.1	0.0	0.00024	20.3	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_11	PF08241.12	gi|296242728|ref|YP_003650215.1|	-	0.00083	20.0	0.0	0.0013	19.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|296242728|ref|YP_003650215.1|	-	0.0021	18.1	0.0	0.0029	17.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|296242728|ref|YP_003650215.1|	-	0.0041	16.3	0.0	0.0064	15.7	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
CMAS	PF02353.20	gi|296242728|ref|YP_003650215.1|	-	0.013	14.8	0.0	0.019	14.3	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.14	gi|296242728|ref|YP_003650215.1|	-	0.024	14.2	0.0	0.037	13.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|296242728|ref|YP_003650215.1|	-	0.038	13.9	0.0	0.058	13.3	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|296242728|ref|YP_003650215.1|	-	0.053	13.2	0.0	0.077	12.6	0.0	1.1	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_23	PF13489.6	gi|296242728|ref|YP_003650215.1|	-	0.059	13.2	0.0	0.086	12.7	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Fibrillarin	PF01269.17	gi|296242728|ref|YP_003650215.1|	-	0.11	11.7	0.1	0.14	11.2	0.1	1.2	1	0	0	1	1	1	0	Fibrillarin
UPF0020	PF01170.18	gi|296242728|ref|YP_003650215.1|	-	0.22	11.2	0.0	0.26	10.9	0.0	1.1	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
DUF371	PF04027.13	gi|296242729|ref|YP_003650216.1|	-	5.8e-45	152.5	0.0	6.6e-45	152.3	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
Met_10	PF02475.16	gi|296242730|ref|YP_003650217.1|	-	2.2e-41	141.8	0.0	5.1e-41	140.6	0.0	1.5	2	0	0	2	2	2	1	Met-10+	like-protein
Trm5_N	PF18093.1	gi|296242730|ref|YP_003650217.1|	-	8.8e-10	38.3	0.9	1.8e-09	37.3	0.9	1.5	1	0	0	1	1	1	1	tRNA	methyltransferase	5	N-terminal	domain
DNA_methylase	PF00145.17	gi|296242730|ref|YP_003650217.1|	-	0.00042	19.8	0.0	0.00062	19.2	0.0	1.2	1	0	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
PrmA	PF06325.13	gi|296242730|ref|YP_003650217.1|	-	0.00089	18.7	0.0	0.0013	18.2	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Cons_hypoth95	PF03602.15	gi|296242730|ref|YP_003650217.1|	-	0.0037	16.9	0.0	0.0076	15.9	0.0	1.5	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
TRM	PF02005.16	gi|296242730|ref|YP_003650217.1|	-	0.033	13.4	0.4	0.063	12.4	0.4	1.5	1	1	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_16	PF10294.9	gi|296242730|ref|YP_003650217.1|	-	0.12	12.1	0.0	0.3	10.8	0.0	1.7	2	0	0	2	2	2	0	Lysine	methyltransferase
NAD_kinase	PF01513.21	gi|296242731|ref|YP_003650218.1|	-	6.8e-22	78.0	0.0	1.4e-21	76.9	0.0	1.5	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|296242731|ref|YP_003650218.1|	-	0.022	14.3	0.0	0.035	13.7	0.0	1.3	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
PIN_6	PF17146.4	gi|296242732|ref|YP_003650219.1|	-	3.2e-17	62.8	0.1	4.3e-17	62.4	0.1	1.2	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
zf-ribbon_3	PF13248.6	gi|296242732|ref|YP_003650219.1|	-	0.0018	17.6	2.8	0.0029	16.9	2.8	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
Rad50_zn_hook	PF04423.14	gi|296242732|ref|YP_003650219.1|	-	0.008	16.0	2.4	0.46	10.4	0.2	2.6	2	0	0	2	2	2	1	Rad50	zinc	hook	motif
DNA_ligase_ZBD	PF03119.16	gi|296242732|ref|YP_003650219.1|	-	0.018	15.1	3.3	1.4	9.1	0.1	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DZR	PF12773.7	gi|296242732|ref|YP_003650219.1|	-	0.069	13.2	0.1	0.11	12.6	0.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Prim_Zn_Ribbon	PF08273.12	gi|296242732|ref|YP_003650219.1|	-	0.14	12.5	1.6	5.8	7.3	0.1	2.3	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
OrfB_Zn_ribbon	PF07282.11	gi|296242732|ref|YP_003650219.1|	-	0.14	12.1	0.6	0.28	11.2	0.6	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
NRDD	PF13597.6	gi|296242732|ref|YP_003650219.1|	-	0.19	10.5	0.4	0.27	10.0	0.4	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
Zn-C2H2_12	PF18112.1	gi|296242732|ref|YP_003650219.1|	-	0.23	12.0	2.0	18	5.9	0.1	2.4	2	0	0	2	2	2	0	Autophagy	receptor	zinc	finger-C2H2	domain
Zn-ribbon_8	PF09723.10	gi|296242732|ref|YP_003650219.1|	-	0.32	11.2	3.3	32	4.7	4.4	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|296242732|ref|YP_003650219.1|	-	0.34	10.7	2.6	8.1	6.3	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|296242732|ref|YP_003650219.1|	-	0.42	10.8	3.6	5.1	7.3	0.3	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
PhnA_Zn_Ribbon	PF08274.12	gi|296242732|ref|YP_003650219.1|	-	0.43	10.6	4.1	0.2	11.6	0.7	2.0	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
TF_Zn_Ribbon	PF08271.12	gi|296242732|ref|YP_003650219.1|	-	1.5	8.4	4.3	6.2	6.4	4.5	1.9	1	1	1	2	2	2	0	TFIIB	zinc-binding
Methyltr_RsmB-F	PF01189.17	gi|296242733|ref|YP_003650220.1|	-	2.5e-36	125.2	0.0	3.3e-36	124.8	0.0	1.2	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
PUA	PF01472.20	gi|296242733|ref|YP_003650220.1|	-	8.2e-13	48.1	0.3	2e-12	46.9	0.3	1.7	1	0	0	1	1	1	1	PUA	domain
Methyltransf_31	PF13847.6	gi|296242733|ref|YP_003650220.1|	-	0.00055	19.8	0.0	0.0013	18.6	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|296242733|ref|YP_003650220.1|	-	0.0022	18.1	0.0	0.005	17.0	0.0	1.5	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltr_RsmF_N	PF17125.5	gi|296242733|ref|YP_003650220.1|	-	0.013	16.0	0.0	0.21	12.1	0.0	2.5	2	0	0	2	2	2	0	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
Met_10	PF02475.16	gi|296242733|ref|YP_003650220.1|	-	0.029	14.1	0.0	0.058	13.1	0.0	1.5	1	0	0	1	1	1	0	Met-10+	like-protein
Cons_hypoth95	PF03602.15	gi|296242733|ref|YP_003650220.1|	-	0.057	13.1	0.1	0.17	11.5	0.0	1.7	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
Methyltransf_8	PF05148.15	gi|296242733|ref|YP_003650220.1|	-	0.077	12.8	0.0	0.42	10.4	0.0	2.0	2	0	0	2	2	2	0	Hypothetical	methyltransferase
Methyltransf_15	PF09445.10	gi|296242733|ref|YP_003650220.1|	-	0.089	12.4	0.0	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
DUF5603	PF18231.1	gi|296242733|ref|YP_003650220.1|	-	0.091	13.1	0.2	0.3	11.4	0.2	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5603)
Methyltransf_25	PF13649.6	gi|296242733|ref|YP_003650220.1|	-	0.11	13.2	0.0	2.7	8.8	0.0	2.4	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|296242733|ref|YP_003650220.1|	-	0.15	12.7	0.0	3.3	8.4	0.0	2.5	1	1	0	1	1	1	0	Methyltransferase	domain
DUF2283	PF10049.9	gi|296242735|ref|YP_003650222.1|	-	9.5e-13	48.2	0.2	1.2e-12	47.9	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2283)
Nitro_FeMo-Co	PF02579.17	gi|296242737|ref|YP_003650224.1|	-	0.015	15.7	0.0	0.018	15.4	0.0	1.2	1	0	0	1	1	1	0	Dinitrogenase	iron-molybdenum	cofactor
AGOG	PF09171.10	gi|296242738|ref|YP_003650225.1|	-	1.8e-50	171.6	0.0	2.3e-50	171.3	0.0	1.1	1	0	0	1	1	1	1	N-glycosylase/DNA	lyase
HD	PF01966.22	gi|296242739|ref|YP_003650226.1|	-	4.1e-15	56.1	0.2	7e-15	55.3	0.2	1.4	1	0	0	1	1	1	1	HD	domain
Radical_SAM	PF04055.21	gi|296242740|ref|YP_003650227.1|	-	7.8e-13	49.1	0.1	1.6e-12	48.2	0.1	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|296242740|ref|YP_003650227.1|	-	1.1e-09	38.6	0.0	2.2e-09	37.7	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|296242740|ref|YP_003650227.1|	-	2.6e-05	24.3	0.0	5.1e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
tRNA-synt_1	PF00133.22	gi|296242742|ref|YP_003650229.1|	-	6.3e-110	368.2	0.0	2e-108	363.3	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|296242742|ref|YP_003650229.1|	-	1.9e-32	112.5	0.1	2.5e-16	59.4	0.0	4.1	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|296242742|ref|YP_003650229.1|	-	3.4e-29	101.8	0.7	6.9e-29	100.8	0.7	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1_2	PF13603.6	gi|296242742|ref|YP_003650229.1|	-	9.6e-06	25.2	0.0	0.00069	19.2	0.0	2.3	1	1	1	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
Mut7-C	PF01927.16	gi|296242742|ref|YP_003650229.1|	-	0.0009	19.4	0.7	0.59	10.2	0.0	3.6	2	2	0	2	2	2	1	Mut7-C	RNAse	domain
zf-TFIIB	PF13453.6	gi|296242742|ref|YP_003650229.1|	-	0.0086	15.4	2.1	5.3	6.5	0.0	3.6	3	0	0	3	3	3	1	Transcription	factor	zinc-finger
DZR	PF12773.7	gi|296242742|ref|YP_003650229.1|	-	0.023	14.7	1.6	2.7	8.1	0.2	3.2	3	0	0	3	3	3	0	Double	zinc	ribbon
zf-ACC	PF17848.1	gi|296242742|ref|YP_003650229.1|	-	0.042	13.9	7.1	7.4	6.8	0.1	4.5	4	0	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
tRNA-synt_1f	PF01921.18	gi|296242742|ref|YP_003650229.1|	-	0.064	12.2	0.0	1.5	7.6	0.0	2.3	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
TF_Zn_Ribbon	PF08271.12	gi|296242742|ref|YP_003650229.1|	-	0.29	10.7	1.7	89	2.7	0.1	3.5	3	0	0	3	3	3	0	TFIIB	zinc-binding
zf-ISL3	PF14690.6	gi|296242742|ref|YP_003650229.1|	-	0.97	10.2	8.7	16	6.2	0.4	4.1	4	0	0	4	4	4	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-ribbon_3	PF13248.6	gi|296242742|ref|YP_003650229.1|	-	8.3	6.0	11.0	4.5	6.8	0.5	4.0	4	0	0	4	4	4	0	zinc-ribbon	domain
PHP_C	PF13263.6	gi|296242743|ref|YP_003650230.1|	-	6.7e-16	57.8	0.1	1.4e-15	56.8	0.1	1.5	1	0	0	1	1	1	1	PHP-associated
PHP	PF02811.19	gi|296242743|ref|YP_003650230.1|	-	3.6e-10	40.4	0.0	5.1e-09	36.7	0.0	2.0	2	0	0	2	2	2	1	PHP	domain
DUF460	PF04312.13	gi|296242743|ref|YP_003650230.1|	-	0.072	12.8	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF460)
zf-C3HC4_3	PF13920.6	gi|296242744|ref|YP_003650231.1|	-	0.0002	21.1	7.8	0.0065	16.3	7.9	2.3	1	1	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.7	gi|296242744|ref|YP_003650231.1|	-	0.00048	20.1	5.3	0.048	13.7	5.6	2.3	1	1	1	2	2	2	2	Double	zinc	ribbon
zf-C6H2	PF15801.5	gi|296242744|ref|YP_003650231.1|	-	0.0011	19.2	0.4	0.0011	19.2	0.4	2.8	1	1	2	3	3	3	1	zf-MYND-like	zinc	finger,	mRNA-binding
zf-TFIIB	PF13453.6	gi|296242744|ref|YP_003650231.1|	-	0.0093	15.3	3.4	1.4	8.3	0.2	2.3	2	0	0	2	2	2	2	Transcription	factor	zinc-finger
PHF5	PF03660.14	gi|296242744|ref|YP_003650231.1|	-	0.033	14.4	6.4	0.084	13.1	3.1	2.2	1	1	1	2	2	2	0	PHF5-like	protein
DUF4428	PF14471.6	gi|296242744|ref|YP_003650231.1|	-	0.039	13.9	3.5	0.039	13.9	3.5	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
zinc-ribbons_6	PF07191.12	gi|296242744|ref|YP_003650231.1|	-	0.074	13.0	5.3	1.7	8.7	5.4	2.3	1	1	0	1	1	1	0	zinc-ribbons
zinc_ribbon_10	PF10058.9	gi|296242744|ref|YP_003650231.1|	-	0.14	11.9	9.2	1.4	8.7	1.3	2.3	1	1	1	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Dynactin_p62	PF05502.13	gi|296242744|ref|YP_003650231.1|	-	0.18	10.5	3.7	0.2	10.4	3.7	1.1	1	0	0	1	1	1	0	Dynactin	p62	family
Zn_Tnp_IS1595	PF12760.7	gi|296242744|ref|YP_003650231.1|	-	0.19	11.7	9.2	0.091	12.8	5.9	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-TFIIIC	PF12660.7	gi|296242744|ref|YP_003650231.1|	-	0.2	11.6	2.4	1.1	9.3	2.4	2.0	1	1	0	1	1	1	0	Putative	zinc-finger	of	transcription	factor	IIIC	complex
zf-C2HC5	PF06221.13	gi|296242744|ref|YP_003650231.1|	-	0.26	11.3	4.8	4	7.5	5.1	2.2	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
PhnA_Zn_Ribbon	PF08274.12	gi|296242744|ref|YP_003650231.1|	-	0.33	11.0	9.2	4.2	7.4	3.7	2.6	2	1	0	2	2	2	0	PhnA	Zinc-Ribbon
TF_Zn_Ribbon	PF08271.12	gi|296242744|ref|YP_003650231.1|	-	0.54	9.8	9.2	3.3	7.3	2.5	2.4	2	1	0	2	2	2	0	TFIIB	zinc-binding
zf-RING_2	PF13639.6	gi|296242744|ref|YP_003650231.1|	-	0.77	10.2	7.6	5.6	7.4	7.6	2.3	1	1	0	1	1	1	0	Ring	finger	domain
Prok-RING_4	PF14447.6	gi|296242744|ref|YP_003650231.1|	-	1.1	9.2	6.9	22	5.0	3.7	2.8	1	1	2	3	3	3	0	Prokaryotic	RING	finger	family	4
zinc_ribbon_2	PF13240.6	gi|296242744|ref|YP_003650231.1|	-	1.8	8.4	11.8	1.3	8.8	0.1	3.2	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-Di19	PF05605.12	gi|296242744|ref|YP_003650231.1|	-	1.9	8.9	7.7	1.8	8.9	0.9	2.9	3	0	0	3	3	3	0	Drought	induced	19	protein	(Di19),	zinc-binding
PyrI_C	PF02748.15	gi|296242744|ref|YP_003650231.1|	-	2.9	7.9	8.1	0.35	10.8	3.1	2.0	2	1	0	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
HscB_4_cys	PF18256.1	gi|296242744|ref|YP_003650231.1|	-	3	7.7	6.8	6.9	6.6	0.0	3.0	2	1	1	3	3	3	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
C1_2	PF03107.16	gi|296242744|ref|YP_003650231.1|	-	3.3	8.1	13.1	3.3	8.1	4.1	2.5	1	1	1	2	2	2	0	C1	domain
Zn_ribbon_SprT	PF17283.2	gi|296242744|ref|YP_003650231.1|	-	3.6	7.6	14.8	0.56	10.1	1.8	2.8	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-RING_5	PF14634.6	gi|296242744|ref|YP_003650231.1|	-	3.7	7.6	10.4	9.4	6.3	4.7	2.7	1	1	0	2	2	2	0	zinc-RING	finger	domain
zf-ribbon_3	PF13248.6	gi|296242744|ref|YP_003650231.1|	-	4	7.0	8.8	8	6.0	0.3	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-LITAF-like	PF10601.9	gi|296242744|ref|YP_003650231.1|	-	5.1	7.4	10.2	55	4.1	10.2	2.6	1	1	0	1	1	1	0	LITAF-like	zinc	ribbon	domain
Metallophos	PF00149.28	gi|296242745|ref|YP_003650232.1|	-	5.3e-12	46.7	0.0	6.8e-12	46.3	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|296242745|ref|YP_003650232.1|	-	1.7e-05	25.1	0.0	4.6e-05	23.7	0.0	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
RimK	PF08443.11	gi|296242747|ref|YP_003650234.1|	-	1e-23	83.9	0.0	1.4e-23	83.5	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|296242747|ref|YP_003650234.1|	-	6.3e-12	45.2	0.0	9.5e-12	44.7	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|296242747|ref|YP_003650234.1|	-	1.7e-08	34.7	0.0	2.5e-08	34.2	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
Ins134_P3_kin	PF05770.11	gi|296242747|ref|YP_003650234.1|	-	2.7e-06	27.0	0.0	0.054	13.0	0.0	2.3	1	1	1	2	2	2	2	Inositol	1,3,4-trisphosphate	5/6-kinase	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|296242747|ref|YP_003650234.1|	-	5.2e-06	25.9	0.0	0.3	10.3	0.0	3.1	1	1	2	3	3	3	2	Sugar-transfer	associated	ATP-grasp
R2K_3	PF14243.6	gi|296242747|ref|YP_003650234.1|	-	1.7e-05	24.9	0.1	6.6e-05	23.0	0.0	1.8	2	0	0	2	2	2	1	ATP-grasp	domain,	R2K	clade	family	3
ATPgrasp_YheCD	PF14398.6	gi|296242747|ref|YP_003650234.1|	-	0.0012	18.2	0.1	0.85	8.8	0.0	3.0	1	1	1	2	2	2	2	YheC/D	like	ATP-grasp
DUF3870	PF12986.7	gi|296242749|ref|YP_003650236.1|	-	0.11	12.8	0.1	0.72	10.1	0.0	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3870)
PNP_UDP_1	PF01048.20	gi|296242750|ref|YP_003650237.1|	-	1.9e-48	164.8	0.0	2.2e-48	164.6	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Pribosyltran	PF00156.27	gi|296242751|ref|YP_003650238.1|	-	6.9e-18	64.7	0.0	1e-17	64.1	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|296242751|ref|YP_003650238.1|	-	0.19	11.2	0.0	0.25	10.8	0.0	1.3	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
Flavin_Reduct	PF01613.18	gi|296242752|ref|YP_003650239.1|	-	1e-27	97.1	0.0	1.3e-27	96.7	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
ATP-grasp_2	PF08442.10	gi|296242753|ref|YP_003650240.1|	-	4.1e-60	202.8	0.3	7.3e-60	202.0	0.3	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
Ligase_CoA	PF00549.19	gi|296242753|ref|YP_003650240.1|	-	1.7e-20	73.4	0.9	6.5e-20	71.5	0.2	2.1	2	0	0	2	2	2	1	CoA-ligase
ATP-grasp_5	PF13549.6	gi|296242753|ref|YP_003650240.1|	-	1.7e-09	37.4	1.8	1.6e-08	34.3	1.8	2.4	1	1	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|296242753|ref|YP_003650240.1|	-	7.3e-05	22.6	0.4	0.0004	20.2	0.2	2.0	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Succ_CoA_lig	PF13607.6	gi|296242753|ref|YP_003650240.1|	-	0.0029	17.4	0.0	0.0051	16.6	0.0	1.4	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
Peripla_BP_3	PF13377.6	gi|296242753|ref|YP_003650240.1|	-	0.019	15.3	0.0	0.052	13.9	0.0	1.7	1	0	0	1	1	1	0	Periplasmic	binding	protein-like	domain
CoA_binding	PF02629.19	gi|296242754|ref|YP_003650241.1|	-	9.2e-30	103.2	1.8	1.6e-29	102.4	1.1	1.8	2	0	0	2	2	2	1	CoA	binding	domain
Succ_CoA_lig	PF13607.6	gi|296242754|ref|YP_003650241.1|	-	7.4e-17	61.4	0.0	6.4e-16	58.4	0.0	2.0	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
Ligase_CoA	PF00549.19	gi|296242754|ref|YP_003650241.1|	-	4.4e-16	59.1	0.0	6.9e-16	58.4	0.0	1.3	1	0	0	1	1	1	1	CoA-ligase
CoA_binding_2	PF13380.6	gi|296242754|ref|YP_003650241.1|	-	5.1e-10	39.9	0.0	1.1e-08	35.6	0.0	2.2	2	0	0	2	2	2	1	CoA	binding	domain
GFO_IDH_MocA	PF01408.22	gi|296242754|ref|YP_003650241.1|	-	0.078	13.8	0.0	0.26	12.1	0.0	1.9	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
FliJ	PF02050.16	gi|296242755|ref|YP_003650242.1|	-	0.00027	21.2	0.6	0.00095	19.4	0.2	1.8	2	0	0	2	2	2	1	Flagellar	FliJ	protein
YqjK	PF13997.6	gi|296242755|ref|YP_003650242.1|	-	0.00038	20.7	0.2	0.31	11.3	0.3	2.2	2	0	0	2	2	2	2	YqjK-like	protein
DUF1351	PF07083.11	gi|296242755|ref|YP_003650242.1|	-	0.0044	16.8	1.4	0.0044	16.8	1.4	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1351)
Prefoldin	PF02996.17	gi|296242755|ref|YP_003650242.1|	-	0.0065	16.4	3.9	2	8.4	1.4	2.5	2	1	0	2	2	2	2	Prefoldin	subunit
Sec5	PF15469.6	gi|296242755|ref|YP_003650242.1|	-	0.011	15.6	2.0	0.035	13.9	2.0	1.8	1	1	0	1	1	1	0	Exocyst	complex	component	Sec5
FTA4	PF13093.6	gi|296242755|ref|YP_003650242.1|	-	0.015	15.2	2.4	0.11	12.3	2.0	1.9	1	1	1	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
DUF4795	PF16043.5	gi|296242755|ref|YP_003650242.1|	-	0.022	14.4	0.4	0.03	13.9	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
DASH_Dad3	PF08656.10	gi|296242755|ref|YP_003650242.1|	-	0.031	14.3	1.4	0.17	12.0	1.4	2.3	1	1	0	1	1	1	0	DASH	complex	subunit	Dad3
5_3_exonuc	PF01367.20	gi|296242755|ref|YP_003650242.1|	-	0.17	12.5	3.5	0.17	12.5	2.0	1.8	1	1	1	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
BLOC1_2	PF10046.9	gi|296242755|ref|YP_003650242.1|	-	0.19	12.1	2.6	4.8	7.5	0.7	2.4	2	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF1993	PF09351.10	gi|296242755|ref|YP_003650242.1|	-	0.19	11.9	1.3	3.5	7.8	0.4	2.2	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1993)
COG2	PF06148.11	gi|296242755|ref|YP_003650242.1|	-	0.27	11.3	2.0	0.25	11.4	0.5	1.6	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF4140	PF13600.6	gi|296242755|ref|YP_003650242.1|	-	0.29	11.6	2.8	7.3	7.1	1.6	2.2	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
THOC7	PF05615.13	gi|296242755|ref|YP_003650242.1|	-	0.45	10.8	6.3	0.1	12.9	2.5	1.7	2	0	0	2	2	2	0	Tho	complex	subunit	7
Osmo_CC	PF08946.10	gi|296242755|ref|YP_003650242.1|	-	1.3	9.3	5.6	5.9	7.2	0.6	2.5	2	1	0	2	2	2	0	Osmosensory	transporter	coiled	coil
Pyrophosphatase	PF00719.19	gi|296242756|ref|YP_003650243.1|	-	5.8e-57	192.0	0.1	6.7e-57	191.8	0.1	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
ATP-grasp_3	PF02655.14	gi|296242757|ref|YP_003650244.1|	-	0.05	13.6	0.0	0.051	13.6	0.0	1.2	1	0	0	1	1	1	0	ATP-grasp	domain
ATPase	PF06745.13	gi|296242758|ref|YP_003650245.1|	-	2.1e-36	125.4	0.0	3.5e-36	124.7	0.0	1.4	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|296242758|ref|YP_003650245.1|	-	8e-11	41.9	0.0	1.6e-10	40.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|296242758|ref|YP_003650245.1|	-	4.6e-07	29.4	0.2	8e-06	25.4	0.0	2.6	2	1	1	3	3	3	1	DnaB-like	helicase	C	terminal	domain
GvpD	PF07088.11	gi|296242758|ref|YP_003650245.1|	-	7.9e-07	28.1	0.7	2.4e-06	26.5	0.2	1.9	2	1	0	2	2	2	1	GvpD	gas	vesicle	protein
IstB_IS21	PF01695.17	gi|296242758|ref|YP_003650245.1|	-	1e-05	25.4	0.0	2.4e-05	24.1	0.0	1.7	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
Rad51	PF08423.11	gi|296242758|ref|YP_003650245.1|	-	2.2e-05	23.9	0.1	4.4e-05	22.9	0.1	1.5	1	0	0	1	1	1	1	Rad51
AAA_24	PF13479.6	gi|296242758|ref|YP_003650245.1|	-	5e-05	23.1	0.0	9.5e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|296242758|ref|YP_003650245.1|	-	5.2e-05	23.3	0.5	0.00012	22.2	0.1	1.8	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|296242758|ref|YP_003650245.1|	-	0.00016	22.1	0.0	0.0005	20.5	0.0	1.8	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|296242758|ref|YP_003650245.1|	-	0.00027	21.1	0.0	0.00051	20.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|296242758|ref|YP_003650245.1|	-	0.00035	21.1	0.1	0.001	19.6	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
CobA_CobO_BtuR	PF02572.15	gi|296242758|ref|YP_003650245.1|	-	0.00039	20.7	0.0	0.00083	19.7	0.0	1.5	1	0	0	1	1	1	1	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
AAA_16	PF13191.6	gi|296242758|ref|YP_003650245.1|	-	0.00053	20.4	0.0	0.0017	18.8	0.0	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
ATPase_2	PF01637.18	gi|296242758|ref|YP_003650245.1|	-	0.00054	19.9	0.1	0.00089	19.2	0.1	1.3	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|296242758|ref|YP_003650245.1|	-	0.001	19.3	0.0	0.0027	18.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|296242758|ref|YP_003650245.1|	-	0.0027	17.0	0.0	0.004	16.4	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
KTI12	PF08433.10	gi|296242758|ref|YP_003650245.1|	-	0.0037	16.8	0.2	0.022	14.2	0.1	2.0	1	1	1	2	2	2	1	Chromatin	associated	protein	KTI12
ABC_tran	PF00005.27	gi|296242758|ref|YP_003650245.1|	-	0.0048	17.4	0.0	0.011	16.2	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
6PF2K	PF01591.18	gi|296242758|ref|YP_003650245.1|	-	0.0052	16.1	0.0	0.01	15.2	0.0	1.4	1	0	0	1	1	1	1	6-phosphofructo-2-kinase
NB-ARC	PF00931.22	gi|296242758|ref|YP_003650245.1|	-	0.0052	16.0	0.0	0.014	14.6	0.0	1.7	2	0	0	2	2	2	1	NB-ARC	domain
AAA_5	PF07728.14	gi|296242758|ref|YP_003650245.1|	-	0.012	15.6	0.0	0.024	14.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|296242758|ref|YP_003650245.1|	-	0.013	15.5	0.3	0.038	13.9	0.3	1.9	1	1	0	1	1	1	0	NACHT	domain
CbiA	PF01656.23	gi|296242758|ref|YP_003650245.1|	-	0.013	15.6	0.0	0.021	14.9	0.0	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
RecA	PF00154.21	gi|296242758|ref|YP_003650245.1|	-	0.014	14.9	0.0	0.033	13.7	0.1	1.5	1	1	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
AAA_10	PF12846.7	gi|296242758|ref|YP_003650245.1|	-	0.028	13.3	0.0	0.045	12.7	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
PhoH	PF02562.16	gi|296242758|ref|YP_003650245.1|	-	0.029	13.8	0.0	0.053	13.0	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
cobW	PF02492.19	gi|296242758|ref|YP_003650245.1|	-	0.051	13.2	0.1	0.13	11.8	0.1	1.8	1	1	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_30	PF13604.6	gi|296242758|ref|YP_003650245.1|	-	0.087	12.5	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Zot	PF05707.12	gi|296242758|ref|YP_003650245.1|	-	0.091	12.4	0.0	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
NTPase_1	PF03266.15	gi|296242758|ref|YP_003650245.1|	-	0.11	12.4	0.0	0.23	11.4	0.0	1.6	1	1	0	1	1	1	0	NTPase
AAA_19	PF13245.6	gi|296242758|ref|YP_003650245.1|	-	0.13	12.6	0.2	0.28	11.5	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|296242758|ref|YP_003650245.1|	-	0.16	11.6	0.0	0.33	10.6	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.12	gi|296242758|ref|YP_003650245.1|	-	0.18	11.1	0.0	0.31	10.3	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Rubrerythrin	PF02915.17	gi|296242759|ref|YP_003650246.1|	-	0.009	16.4	0.3	0.064	13.7	0.3	2.0	1	1	0	1	1	1	1	Rubrerythrin
Proton_antipo_M	PF00361.20	gi|296242760|ref|YP_003650247.1|	-	2.5e-34	118.8	20.6	6.5e-34	117.5	20.6	1.8	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
NADHdeh_related	PF10125.9	gi|296242760|ref|YP_003650247.1|	-	1.7e-08	34.1	6.0	1.7e-08	34.1	6.0	2.9	3	1	1	4	4	4	1	NADH	dehydrogenase	I,	subunit	N	related	protein
Complex1_30kDa	PF00329.19	gi|296242761|ref|YP_003650248.1|	-	3.3e-27	95.5	0.0	5.6e-27	94.8	0.0	1.4	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Oxidored_q6	PF01058.22	gi|296242761|ref|YP_003650248.1|	-	1.5e-08	34.5	0.0	2.6e-08	33.7	0.0	1.4	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
DUF35_N	PF12172.8	gi|296242761|ref|YP_003650248.1|	-	0.012	15.4	0.5	0.037	13.9	0.1	1.9	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Complex1_49kDa	PF00346.19	gi|296242762|ref|YP_003650249.1|	-	2.7e-71	239.8	0.0	1.5e-54	184.9	0.0	2.1	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|296242762|ref|YP_003650249.1|	-	0.00014	20.9	0.0	0.00022	20.3	0.0	1.3	1	0	0	1	1	1	1	Nickel-dependent	hydrogenase
Fer4	PF00037.27	gi|296242763|ref|YP_003650250.1|	-	2.6e-15	55.5	11.1	4.1e-09	35.9	1.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|296242763|ref|YP_003650250.1|	-	2.9e-11	43.3	20.6	8.2e-08	32.2	13.6	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296242763|ref|YP_003650250.1|	-	1.4e-10	41.1	8.5	3.2e-05	24.0	2.9	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|296242763|ref|YP_003650250.1|	-	3.5e-10	40.3	13.8	9.2e-10	39.0	14.1	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|296242763|ref|YP_003650250.1|	-	6.7e-10	39.8	3.7	0.00066	20.6	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|296242763|ref|YP_003650250.1|	-	1.8e-08	34.4	11.8	2.8e-08	33.8	11.8	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296242763|ref|YP_003650250.1|	-	1.8e-07	30.8	10.7	8.5e-05	22.4	1.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|296242763|ref|YP_003650250.1|	-	4.1e-07	29.8	15.8	0.00016	21.6	1.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|296242763|ref|YP_003650250.1|	-	2.5e-06	28.1	6.4	0.0029	18.3	0.1	2.5	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.6	gi|296242763|ref|YP_003650250.1|	-	5e-05	23.7	14.1	0.011	16.2	16.2	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|296242763|ref|YP_003650250.1|	-	0.00014	22.3	7.1	0.061	13.9	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|296242763|ref|YP_003650250.1|	-	0.00055	20.4	14.1	0.1	13.2	15.4	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|296242763|ref|YP_003650250.1|	-	0.0043	17.4	12.3	0.11	13.0	1.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|296242763|ref|YP_003650250.1|	-	0.0072	17.2	24.2	0.014	16.3	5.0	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|296242763|ref|YP_003650250.1|	-	0.036	14.9	12.4	1.2	10.0	4.5	2.4	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|296242763|ref|YP_003650250.1|	-	0.098	12.9	12.3	0.95	9.7	1.2	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
zinc_ribbon_16	PF17034.5	gi|296242763|ref|YP_003650250.1|	-	0.22	11.8	6.5	4.4	7.5	0.2	2.1	1	1	1	2	2	2	0	Zinc-ribbon	like	family
MrpF_PhaF	PF04066.13	gi|296242764|ref|YP_003650251.1|	-	7.5e-09	35.9	7.5	7.5e-09	35.9	7.5	1.9	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
PhaG_MnhG_YufB	PF03334.14	gi|296242765|ref|YP_003650252.1|	-	8.1e-14	51.6	8.0	1.1e-13	51.2	8.0	1.2	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
DUF4040	PF13244.6	gi|296242766|ref|YP_003650253.1|	-	1.4e-12	47.6	6.3	1.4e-12	47.6	6.3	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4040)
FtsX	PF02687.21	gi|296242766|ref|YP_003650253.1|	-	6	7.4	9.2	10	6.7	9.2	1.4	1	1	0	1	1	1	0	FtsX-like	permease	family
MnhB	PF04039.13	gi|296242767|ref|YP_003650254.1|	-	5e-22	78.5	10.0	5e-22	78.5	10.0	2.1	2	1	0	2	2	2	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF2106	PF09879.9	gi|296242767|ref|YP_003650254.1|	-	0.009	15.6	0.1	0.024	14.2	0.1	1.7	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2106)
Oxidored_q2	PF00420.24	gi|296242768|ref|YP_003650255.1|	-	9.3e-18	63.8	1.6	1.2e-17	63.4	1.6	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
MNHE	PF01899.16	gi|296242769|ref|YP_003650256.1|	-	4.3e-37	127.1	0.7	4.9e-37	126.9	0.7	1.0	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
NADHdh	PF00146.21	gi|296242771|ref|YP_003650258.1|	-	1.5e-57	195.2	21.8	1.9e-57	194.9	21.8	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
DS	PF01916.17	gi|296242772|ref|YP_003650259.1|	-	7.9e-89	297.7	0.0	9e-89	297.5	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
DUF973	PF06157.11	gi|296242773|ref|YP_003650260.1|	-	6.8e-17	61.5	22.4	8.7e-17	61.1	22.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
Endonuclease_5	PF04493.14	gi|296242778|ref|YP_003650265.1|	-	5.4e-49	166.6	0.1	6.7e-49	166.3	0.1	1.1	1	0	0	1	1	1	1	Endonuclease	V
DUF2204	PF09970.9	gi|296242779|ref|YP_003650266.1|	-	6.4e-55	185.6	0.0	7.1e-55	185.4	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
Ribosomal_L40e	PF01020.17	gi|296242780|ref|YP_003650267.1|	-	2.5e-09	36.9	3.2	2.9e-09	36.7	3.2	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
zinc_ribbon_2	PF13240.6	gi|296242780|ref|YP_003650267.1|	-	0.00057	19.5	3.8	0.00076	19.1	3.8	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|296242780|ref|YP_003650267.1|	-	0.00061	19.1	2.2	0.00091	18.5	2.2	1.3	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
DZR	PF12773.7	gi|296242780|ref|YP_003650267.1|	-	0.0012	18.8	0.6	0.0013	18.7	0.6	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|296242780|ref|YP_003650267.1|	-	0.011	15.1	3.8	0.015	14.7	3.8	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
Rpr2	PF04032.16	gi|296242780|ref|YP_003650267.1|	-	0.023	15.0	1.6	0.027	14.8	1.6	1.1	1	0	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DUF35_N	PF12172.8	gi|296242780|ref|YP_003650267.1|	-	0.035	14.0	3.4	0.047	13.6	3.4	1.2	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin_2	PF18073.1	gi|296242780|ref|YP_003650267.1|	-	0.039	13.7	1.8	0.086	12.6	1.8	1.5	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
CpXC	PF14353.6	gi|296242780|ref|YP_003650267.1|	-	0.074	13.1	0.7	0.47	10.5	0.7	1.9	1	1	0	1	1	1	0	CpXC	protein
RNA_POL_M_15KD	PF02150.16	gi|296242780|ref|YP_003650267.1|	-	1.4	8.8	4.8	3.7	7.5	0.1	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Hexapep	PF00132.24	gi|296242781|ref|YP_003650268.1|	-	0.084	12.6	1.5	0.98	9.3	1.0	2.6	2	1	1	3	3	3	0	Bacterial	transferase	hexapeptide	(six	repeats)
YtpI	PF14007.6	gi|296242782|ref|YP_003650269.1|	-	0.0023	18.0	0.6	0.0023	18.0	0.6	1.1	1	0	0	1	1	1	1	YtpI-like	protein
DUF308	PF03729.13	gi|296242782|ref|YP_003650269.1|	-	0.09	13.1	10.8	0.16	12.3	10.8	1.4	1	1	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
SPC25	PF06703.11	gi|296242782|ref|YP_003650269.1|	-	0.12	12.1	2.7	0.21	11.3	2.7	1.5	1	1	0	1	1	1	0	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
DUF3096	PF11295.8	gi|296242782|ref|YP_003650269.1|	-	0.15	11.8	18.6	0.55	9.9	18.6	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3096)
DUF4233	PF14017.6	gi|296242783|ref|YP_003650270.1|	-	0.12	12.8	4.7	0.17	12.3	4.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4233)
Xan_ur_permease	PF00860.20	gi|296242786|ref|YP_003650273.1|	-	0.025	13.3	0.6	0.026	13.2	0.6	1.0	1	0	0	1	1	1	0	Permease	family
DUF202	PF02656.15	gi|296242786|ref|YP_003650273.1|	-	0.1	13.1	1.3	0.11	13.0	1.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
Translin	PF01997.16	gi|296242787|ref|YP_003650274.1|	-	1.6e-05	25.0	0.0	0.00012	22.1	0.0	2.1	1	1	0	1	1	1	1	Translin	family
Glycos_transf_1	PF00534.20	gi|296242788|ref|YP_003650275.1|	-	2e-25	89.3	0.0	3.3e-25	88.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|296242788|ref|YP_003650275.1|	-	1.2e-10	41.9	0.0	2e-10	41.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|296242788|ref|YP_003650275.1|	-	5.8e-08	32.9	0.1	0.00036	20.6	0.0	3.3	2	1	1	3	3	3	2	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|296242788|ref|YP_003650275.1|	-	0.00024	21.4	0.0	0.00075	19.8	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Lactamase_B_2	PF12706.7	gi|296242789|ref|YP_003650276.1|	-	3.7e-08	33.1	0.0	6.3e-08	32.4	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|296242789|ref|YP_003650276.1|	-	0.0025	17.9	0.0	0.0046	17.0	0.0	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
DRMBL	PF07522.14	gi|296242789|ref|YP_003650276.1|	-	0.051	13.8	0.0	0.15	12.3	0.0	1.8	2	0	0	2	2	2	0	DNA	repair	metallo-beta-lactamase
RHH_1	PF01402.21	gi|296242790|ref|YP_003650277.1|	-	0.0024	17.7	0.1	0.0024	17.7	0.1	2.8	3	0	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
BLOC1_2	PF10046.9	gi|296242790|ref|YP_003650277.1|	-	0.0034	17.7	2.1	0.0069	16.7	2.1	1.5	1	0	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
GAS	PF13851.6	gi|296242790|ref|YP_003650277.1|	-	0.0059	16.0	1.5	0.01	15.2	0.3	1.9	1	1	1	2	2	2	1	Growth-arrest	specific	micro-tubule	binding
SKA2	PF16740.5	gi|296242790|ref|YP_003650277.1|	-	0.0093	15.7	0.6	0.019	14.8	0.6	1.5	1	0	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	2
Spc7	PF08317.11	gi|296242790|ref|YP_003650277.1|	-	0.015	14.2	3.3	0.022	13.7	3.3	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
7TMR-HDED	PF07697.11	gi|296242790|ref|YP_003650277.1|	-	0.018	15.2	2.2	0.032	14.4	2.2	1.5	1	1	0	1	1	1	0	7TM-HD	extracellular
FlaC_arch	PF05377.11	gi|296242790|ref|YP_003650277.1|	-	0.024	15.0	1.0	0.082	13.3	1.0	2.0	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
Exonuc_VII_L	PF02601.15	gi|296242790|ref|YP_003650277.1|	-	0.052	13.1	0.4	0.06	12.9	0.4	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.9	gi|296242790|ref|YP_003650277.1|	-	0.063	12.1	1.0	0.074	11.9	1.0	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|296242790|ref|YP_003650277.1|	-	0.081	13.0	0.3	0.14	12.2	0.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
ParD	PF09386.10	gi|296242790|ref|YP_003650277.1|	-	0.087	13.2	1.6	0.14	12.5	0.3	2.1	2	0	0	2	2	2	0	Antitoxin	ParD
UPF0184	PF03670.13	gi|296242790|ref|YP_003650277.1|	-	0.089	13.2	0.2	0.18	12.2	0.2	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0184)
NPV_P10	PF05531.12	gi|296242790|ref|YP_003650277.1|	-	0.12	12.8	0.2	0.31	11.5	0.2	1.8	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
ABC_ATPase	PF09818.9	gi|296242790|ref|YP_003650277.1|	-	0.12	11.1	0.1	0.15	10.8	0.1	1.2	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
Dna2	PF08696.11	gi|296242790|ref|YP_003650277.1|	-	0.15	11.9	0.2	0.24	11.2	0.2	1.2	1	0	0	1	1	1	0	DNA	replication	factor	Dna2
Phasin	PF05597.11	gi|296242790|ref|YP_003650277.1|	-	0.16	12.0	2.0	0.29	11.1	2.0	1.5	1	0	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
VAPB_antitox	PF02697.14	gi|296242790|ref|YP_003650277.1|	-	0.25	12.1	7.3	0.36	11.6	3.1	3.0	2	1	0	2	2	2	0	Putative	antitoxin
SlyX	PF04102.12	gi|296242790|ref|YP_003650277.1|	-	0.5	11.0	4.2	0.83	10.3	1.2	2.6	2	1	1	3	3	3	0	SlyX
CorA	PF01544.18	gi|296242790|ref|YP_003650277.1|	-	0.74	9.1	2.8	1	8.6	2.8	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
TatD_DNase	PF01026.21	gi|296242791|ref|YP_003650278.1|	-	3.5e-23	82.3	0.0	4.1e-23	82.1	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
SpoOE-like	PF09388.10	gi|296242791|ref|YP_003650278.1|	-	0.05	13.5	0.2	0.11	12.4	0.2	1.6	1	0	0	1	1	1	0	Spo0E	like	sporulation	regulatory	protein
Prok-RING_2	PF14445.6	gi|296242792|ref|YP_003650279.1|	-	0.0071	16.5	22.6	0.11	12.6	8.7	2.4	1	1	1	2	2	2	2	Prokaryotic	RING	finger	family	2
zf-B_box	PF00643.24	gi|296242792|ref|YP_003650279.1|	-	0.014	15.5	5.7	0.014	15.5	5.7	3.9	2	1	2	4	4	4	0	B-box	zinc	finger
ribosomal_L24	PF17136.4	gi|296242792|ref|YP_003650279.1|	-	0.016	15.6	2.1	0.02	15.2	0.1	2.1	2	1	1	3	3	3	0	Ribosomal	proteins	50S	L24/mitochondrial	39S	L24
DZR	PF12773.7	gi|296242792|ref|YP_003650279.1|	-	0.31	11.1	23.5	0.44	10.6	1.1	3.7	2	1	0	2	2	2	0	Double	zinc	ribbon
FYVE	PF01363.21	gi|296242792|ref|YP_003650279.1|	-	0.8	9.9	31.7	18	5.6	11.6	3.7	1	1	1	2	2	2	0	FYVE	zinc	finger
PHF5	PF03660.14	gi|296242792|ref|YP_003650279.1|	-	3.4	7.9	21.7	31	4.8	21.7	2.1	1	1	0	1	1	1	0	PHF5-like	protein
Prok-RING_4	PF14447.6	gi|296242792|ref|YP_003650279.1|	-	5.8	6.9	23.9	1.8	8.5	2.7	3.7	3	1	1	4	4	4	0	Prokaryotic	RING	finger	family	4
AIRS_C	PF02769.22	gi|296242793|ref|YP_003650280.1|	-	5.1e-16	59.2	0.1	8.2e-16	58.5	0.1	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|296242793|ref|YP_003650280.1|	-	2e-12	47.6	0.2	3.9e-12	46.6	0.2	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Snf7	PF03357.21	gi|296242795|ref|YP_003650282.1|	-	0.0024	17.5	0.1	0.0046	16.6	0.1	1.7	1	1	0	1	1	1	1	Snf7
Peptidase_C37	PF05416.12	gi|296242795|ref|YP_003650282.1|	-	0.0056	15.3	0.1	0.0056	15.3	0.1	1.1	1	0	0	1	1	1	1	Southampton	virus-type	processing	peptidase
DUF4125	PF13526.6	gi|296242795|ref|YP_003650282.1|	-	0.0091	15.6	0.3	0.013	15.1	0.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4125)
DUF5388	PF17363.2	gi|296242795|ref|YP_003650282.1|	-	0.026	14.7	0.0	0.052	13.7	0.0	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5388)
BLOC1S3	PF15753.5	gi|296242795|ref|YP_003650282.1|	-	0.075	13.2	0.3	0.14	12.3	0.0	1.6	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex	1	subunit	3
CutA1	PF03091.15	gi|296242797|ref|YP_003650284.1|	-	4.5e-37	125.9	0.6	5e-37	125.7	0.6	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
SseB_C	PF14581.6	gi|296242797|ref|YP_003650284.1|	-	0.12	12.4	0.0	0.16	12.1	0.0	1.2	1	1	0	1	1	1	0	SseB	protein	C-terminal	domain
GCH_III	PF05165.12	gi|296242799|ref|YP_003650286.1|	-	0.00042	19.7	0.0	0.054	12.7	0.0	2.1	2	0	0	2	2	2	2	GTP	cyclohydrolase	III
SIS	PF01380.22	gi|296242800|ref|YP_003650287.1|	-	5.9e-42	142.6	0.1	1.7e-26	92.6	0.3	2.5	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|296242800|ref|YP_003650287.1|	-	2.5e-14	53.6	0.0	4.9e-14	52.7	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|296242800|ref|YP_003650287.1|	-	1.3e-11	44.5	0.0	2.6e-11	43.5	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.6	gi|296242800|ref|YP_003650287.1|	-	1.3e-06	27.5	0.0	2.2e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
SIS_2	PF13580.6	gi|296242800|ref|YP_003650287.1|	-	9.5e-05	22.4	0.4	0.00034	20.7	0.1	2.1	2	0	0	2	2	2	1	SIS	domain
DUF4350	PF14258.6	gi|296242800|ref|YP_003650287.1|	-	0.14	12.7	0.1	5.9	7.4	0.0	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4350)
tRNA-synt_1b	PF00579.25	gi|296242801|ref|YP_003650288.1|	-	4.3e-46	157.6	0.0	6.2e-46	157.0	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
OMPdecase	PF00215.24	gi|296242802|ref|YP_003650289.1|	-	8.5e-19	68.0	1.0	1e-18	67.8	1.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
His_biosynth	PF00977.21	gi|296242802|ref|YP_003650289.1|	-	0.003	17.0	0.1	0.0042	16.6	0.1	1.4	1	1	0	1	1	1	1	Histidine	biosynthesis	protein
Ribul_P_3_epim	PF00834.19	gi|296242802|ref|YP_003650289.1|	-	0.003	16.9	0.2	0.0038	16.6	0.2	1.4	1	1	0	1	1	1	1	Ribulose-phosphate	3	epimerase	family
NanE	PF04131.14	gi|296242802|ref|YP_003650289.1|	-	0.0043	16.3	0.2	0.022	13.9	0.0	2.0	1	1	1	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
PcrB	PF01884.17	gi|296242802|ref|YP_003650289.1|	-	0.022	14.2	0.1	0.028	13.9	0.1	1.2	1	0	0	1	1	1	0	PcrB	family
QRPTase_C	PF01729.19	gi|296242802|ref|YP_003650289.1|	-	0.052	13.3	0.0	0.11	12.3	0.0	1.5	1	0	0	1	1	1	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
5-FTHF_cyc-lig	PF01812.20	gi|296242803|ref|YP_003650290.1|	-	9.6e-35	120.1	0.0	1.2e-34	119.9	0.0	1.0	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
polyprenyl_synt	PF00348.17	gi|296242804|ref|YP_003650291.1|	-	3.6e-52	177.0	0.0	4.9e-52	176.5	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
DPM3	PF08285.11	gi|296242805|ref|YP_003650292.1|	-	0.002	18.3	0.1	0.0023	18.1	0.1	1.1	1	0	0	1	1	1	1	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
DUF3341	PF11821.8	gi|296242805|ref|YP_003650292.1|	-	0.0069	16.0	1.5	0.0083	15.8	1.5	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3341)
Phage_holin_3_6	PF07332.11	gi|296242805|ref|YP_003650292.1|	-	0.036	14.1	0.2	0.055	13.5	0.2	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Pyridox_ox_2	PF12900.7	gi|296242805|ref|YP_003650292.1|	-	0.22	11.5	0.0	0.29	11.1	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
MJ1316	PF04457.12	gi|296242806|ref|YP_003650293.1|	-	7.3e-08	33.0	0.1	8.8e-08	32.8	0.1	1.1	1	0	0	1	1	1	1	MJ1316	RNA	cyclic	group	end	recognition	domain
ELFV_dehydrog	PF00208.21	gi|296242807|ref|YP_003650294.1|	-	5.1e-75	252.3	0.6	6.4e-75	252.0	0.6	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|296242807|ref|YP_003650294.1|	-	4.9e-50	168.8	0.0	8.6e-50	168.0	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|296242807|ref|YP_003650294.1|	-	0.00035	20.0	0.2	0.00067	19.1	0.2	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF3158	PF11358.8	gi|296242807|ref|YP_003650294.1|	-	0.063	13.0	0.0	0.39	10.4	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3158)
GP88	PF17338.2	gi|296242807|ref|YP_003650294.1|	-	0.082	12.3	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Gene	product	88
Bac_GDH	PF05088.12	gi|296242807|ref|YP_003650294.1|	-	0.11	9.9	0.0	0.16	9.4	0.0	1.1	1	0	0	1	1	1	0	Bacterial	NAD-glutamate	dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|296242807|ref|YP_003650294.1|	-	0.23	11.5	1.5	0.53	10.3	0.3	2.0	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Isochorismatase	PF00857.20	gi|296242808|ref|YP_003650295.1|	-	1.6e-44	152.2	0.0	1.8e-44	152.0	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
AAA_lid_8	PF17868.1	gi|296242809|ref|YP_003650296.1|	-	0.021	14.7	0.1	0.039	13.8	0.1	1.5	1	0	0	1	1	1	0	AAA	lid	domain
ABC_tran	PF00005.27	gi|296242810|ref|YP_003650297.1|	-	8.2e-21	75.0	0.0	1.2e-20	74.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242810|ref|YP_003650297.1|	-	8e-18	65.3	0.6	4.4e-11	43.1	0.6	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|296242810|ref|YP_003650297.1|	-	2.9e-10	40.4	0.1	0.00047	20.0	0.0	2.1	1	1	1	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|296242810|ref|YP_003650297.1|	-	1.2e-06	28.1	0.1	3.4e-05	23.4	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|296242810|ref|YP_003650297.1|	-	0.00079	20.0	0.2	0.0023	18.5	0.0	1.6	1	1	1	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|296242810|ref|YP_003650297.1|	-	0.003	17.3	0.0	0.0057	16.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|296242810|ref|YP_003650297.1|	-	0.0035	17.8	0.1	0.033	14.6	0.1	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|296242810|ref|YP_003650297.1|	-	0.0095	15.7	0.0	0.02	14.6	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
ScsC_N	PF18312.1	gi|296242810|ref|YP_003650297.1|	-	0.012	15.4	0.5	0.012	15.4	0.5	2.0	2	0	0	2	2	2	0	Copper	resistance	protein	ScsC	N-terminal	domain
AAA_27	PF13514.6	gi|296242810|ref|YP_003650297.1|	-	0.012	15.2	0.0	0.019	14.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|296242810|ref|YP_003650297.1|	-	0.013	15.9	0.0	0.02	15.3	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF1492	PF07374.11	gi|296242810|ref|YP_003650297.1|	-	0.015	15.5	0.7	5.3	7.3	0.3	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1492)
AAA_14	PF13173.6	gi|296242810|ref|YP_003650297.1|	-	0.015	15.3	0.1	0.073	13.1	0.0	1.9	1	1	1	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|296242810|ref|YP_003650297.1|	-	0.025	13.4	0.0	0.04	12.7	0.0	1.3	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
HEPN	PF05168.14	gi|296242810|ref|YP_003650297.1|	-	0.026	14.7	0.0	6.6	6.9	0.0	2.2	2	0	0	2	2	2	0	HEPN	domain
ATPase_2	PF01637.18	gi|296242810|ref|YP_003650297.1|	-	0.033	14.1	0.0	0.046	13.6	0.0	1.5	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|296242810|ref|YP_003650297.1|	-	0.044	14.1	0.3	0.24	11.7	0.3	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|296242810|ref|YP_003650297.1|	-	0.15	12.3	0.0	0.24	11.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
FecCD	PF01032.18	gi|296242811|ref|YP_003650298.1|	-	2.5e-62	210.7	32.7	3e-62	210.4	32.7	1.0	1	0	0	1	1	1	1	FecCD	transport	family
Peripla_BP_2	PF01497.18	gi|296242812|ref|YP_003650299.1|	-	5.4e-22	78.5	0.0	7.4e-22	78.1	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
TP_methylase	PF00590.20	gi|296242813|ref|YP_003650300.1|	-	1.5e-21	77.3	0.1	1.9e-21	77.0	0.1	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
AEP1	PF17049.5	gi|296242814|ref|YP_003650301.1|	-	0.0012	18.0	0.9	0.0018	17.5	0.9	1.2	1	0	0	1	1	1	1	ATPase	expression	protein	1
AA_kinase	PF00696.28	gi|296242815|ref|YP_003650302.1|	-	1.5e-28	100.1	0.0	1.7e-28	99.8	0.0	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
DUF4505	PF14956.6	gi|296242815|ref|YP_003650302.1|	-	0.13	12.0	0.0	0.22	11.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4505)
DUF1652	PF07865.11	gi|296242817|ref|YP_003650304.1|	-	0.04	13.8	0.1	0.053	13.3	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1652)
Radical_SAM	PF04055.21	gi|296242818|ref|YP_003650305.1|	-	4.8e-12	46.6	0.0	4e-11	43.6	0.0	2.5	2	1	0	2	2	2	1	Radical	SAM	superfamily
DUF1896	PF08989.10	gi|296242818|ref|YP_003650305.1|	-	0.047	13.8	0.0	0.088	12.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1896)
Queuosine_synth	PF02547.15	gi|296242818|ref|YP_003650305.1|	-	0.11	11.6	0.0	0.14	11.2	0.0	1.1	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein
NIR_SIR	PF01077.22	gi|296242819|ref|YP_003650306.1|	-	0.044	13.3	0.0	0.1	12.1	0.0	1.7	1	0	0	1	1	1	0	Nitrite	and	sulphite	reductase	4Fe-4S	domain
tRNA-synt_1e	PF01406.19	gi|296242820|ref|YP_003650307.1|	-	3.5e-123	410.8	0.0	4.6e-123	410.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|296242820|ref|YP_003650307.1|	-	9.6e-15	54.2	3.0	5.9e-10	38.4	1.2	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|296242820|ref|YP_003650307.1|	-	3.7e-07	28.8	1.5	7.7e-06	24.4	0.0	2.6	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
DALR_2	PF09190.11	gi|296242820|ref|YP_003650307.1|	-	4e-06	27.2	0.0	1.4e-05	25.4	0.0	2.0	2	0	0	2	2	2	1	DALR	domain
tRNA-synt_1c	PF00749.21	gi|296242820|ref|YP_003650307.1|	-	0.0017	17.3	0.2	0.0043	16.0	0.0	1.7	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
PNP_UDP_1	PF01048.20	gi|296242821|ref|YP_003650308.1|	-	1.1e-43	149.2	0.1	1.3e-43	149.0	0.1	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
BRF1	PF07741.13	gi|296242822|ref|YP_003650309.1|	-	0.15	12.4	4.2	1.9	8.9	2.3	2.2	2	0	0	2	2	2	0	Brf1-like	TBP-binding	domain
Pox_Ag35	PF03286.14	gi|296242822|ref|YP_003650309.1|	-	0.2	11.4	6.2	0.32	10.8	6.2	1.2	1	0	0	1	1	1	0	Pox	virus	Ag35	surface	protein
Adenosine_kin	PF04008.14	gi|296242823|ref|YP_003650310.1|	-	6.3e-74	246.9	0.1	7.2e-74	246.7	0.1	1.0	1	0	0	1	1	1	1	Adenosine	specific	kinase
TRAM	PF01938.20	gi|296242825|ref|YP_003650312.1|	-	0.00078	19.4	0.1	0.001	19.0	0.1	1.2	1	0	0	1	1	1	1	TRAM	domain
CSD2	PF17876.1	gi|296242825|ref|YP_003650312.1|	-	0.037	14.2	0.0	0.12	12.6	0.0	1.7	1	1	1	2	2	2	0	Cold	shock	domain
Terminase_4	PF05119.12	gi|296242826|ref|YP_003650313.1|	-	0.051	14.0	0.0	1.9	9.0	0.0	2.2	2	0	0	2	2	2	0	Phage	terminase,	small	subunit
HAD	PF12710.7	gi|296242827|ref|YP_003650314.1|	-	1.9e-14	54.5	0.0	2.3e-14	54.2	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|296242827|ref|YP_003650314.1|	-	1.5e-09	38.5	0.0	2.7e-08	34.4	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|296242827|ref|YP_003650314.1|	-	8.8e-09	35.7	0.0	2.2e-08	34.4	0.0	1.7	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|296242827|ref|YP_003650314.1|	-	2.1e-06	27.7	0.0	1.2e-05	25.2	0.0	2.0	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.12	gi|296242827|ref|YP_003650314.1|	-	0.00016	21.1	0.0	0.054	12.9	0.0	2.0	2	0	0	2	2	2	2	Putative	Phosphatase
Epimerase	PF01370.21	gi|296242828|ref|YP_003650315.1|	-	2.2e-25	89.5	0.0	2.9e-25	89.1	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|296242828|ref|YP_003650315.1|	-	2.4e-20	73.2	0.1	7.2e-20	71.6	0.1	1.8	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|296242828|ref|YP_003650315.1|	-	5.1e-15	55.3	0.0	9.3e-15	54.5	0.0	1.4	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|296242828|ref|YP_003650315.1|	-	1.2e-08	34.3	0.0	1.7e-08	33.8	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|296242828|ref|YP_003650315.1|	-	1.3e-07	31.1	0.5	3.9e-05	22.9	0.2	2.9	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|296242828|ref|YP_003650315.1|	-	3e-06	26.6	0.0	3.9e-05	23.0	0.0	2.4	1	1	0	2	2	2	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|296242828|ref|YP_003650315.1|	-	0.00028	20.8	0.0	0.0004	20.3	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
Semialdhyde_dh	PF01118.24	gi|296242828|ref|YP_003650315.1|	-	0.0066	16.9	0.0	0.011	16.1	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.13	gi|296242828|ref|YP_003650315.1|	-	0.079	12.5	0.2	0.18	11.3	0.2	1.6	1	1	0	1	1	1	0	NmrA-like	family
KR	PF08659.10	gi|296242828|ref|YP_003650315.1|	-	0.14	12.0	0.0	0.31	10.9	0.0	1.5	1	1	0	1	1	1	0	KR	domain
Aminotran_1_2	PF00155.21	gi|296242829|ref|YP_003650316.1|	-	9.9e-67	225.7	0.0	1.2e-66	225.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|296242829|ref|YP_003650316.1|	-	1.6e-06	26.9	0.0	2.2e-06	26.5	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.19	gi|296242829|ref|YP_003650316.1|	-	0.019	13.9	0.0	0.029	13.3	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class-V
OKR_DC_1	PF01276.20	gi|296242829|ref|YP_003650316.1|	-	0.05	12.3	0.0	0.74	8.5	0.0	2.1	1	1	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
FeoA	PF04023.14	gi|296242829|ref|YP_003650316.1|	-	0.051	13.8	0.0	0.2	11.9	0.0	1.9	2	0	0	2	2	2	0	FeoA	domain
Zn-ribbon_8	PF09723.10	gi|296242830|ref|YP_003650317.1|	-	0.00049	20.1	0.7	0.00079	19.5	0.7	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|296242830|ref|YP_003650317.1|	-	0.0032	17.5	0.4	0.0046	17.0	0.4	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
FYDLN_acid	PF09538.10	gi|296242830|ref|YP_003650317.1|	-	0.017	15.8	1.1	0.025	15.3	1.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
HTH_20	PF12840.7	gi|296242830|ref|YP_003650317.1|	-	0.02	14.9	0.0	0.031	14.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HypA	PF01155.19	gi|296242830|ref|YP_003650317.1|	-	0.022	14.8	0.5	0.039	14.0	0.5	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C2HC5	PF06221.13	gi|296242830|ref|YP_003650317.1|	-	0.028	14.4	0.1	0.04	13.9	0.1	1.2	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
ADK_lid	PF05191.14	gi|296242830|ref|YP_003650317.1|	-	0.038	14.0	2.4	0.038	14.0	2.4	1.7	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
HTH_11	PF08279.12	gi|296242830|ref|YP_003650317.1|	-	0.04	13.9	0.1	0.059	13.3	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
OrfB_Zn_ribbon	PF07282.11	gi|296242830|ref|YP_003650317.1|	-	0.073	13.0	0.4	0.098	12.6	0.4	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
HTH_12	PF08461.10	gi|296242830|ref|YP_003650317.1|	-	0.084	12.8	0.1	0.14	12.1	0.1	1.5	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
RuvB_C	PF05491.13	gi|296242830|ref|YP_003650317.1|	-	0.1	12.5	0.1	0.15	11.9	0.1	1.3	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
TF_Zn_Ribbon	PF08271.12	gi|296242830|ref|YP_003650317.1|	-	0.27	10.8	2.4	6	6.5	0.0	2.3	1	1	1	2	2	2	0	TFIIB	zinc-binding
HalOD2	PF18547.1	gi|296242830|ref|YP_003650317.1|	-	0.3	11.0	1.8	7.2	6.6	1.4	2.1	2	0	0	2	2	2	0	Halobacterial	output	domain	2
UPF0547	PF10571.9	gi|296242830|ref|YP_003650317.1|	-	0.48	10.6	0.4	0.48	10.6	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF167	PF02594.16	gi|296242831|ref|YP_003650318.1|	-	4.7e-19	68.3	0.0	8.5e-19	67.5	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	ACR,	YggU	family	COG1872
DUF2949	PF11165.8	gi|296242831|ref|YP_003650318.1|	-	0.014	15.7	0.0	0.025	14.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2949)
Radical_SAM	PF04055.21	gi|296242832|ref|YP_003650319.1|	-	1.5e-21	77.5	0.0	4.3e-21	76.0	0.0	1.8	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|296242832|ref|YP_003650319.1|	-	8.7e-08	32.2	0.0	2.5e-07	30.8	0.0	1.8	1	0	0	1	1	1	1	B12	binding	domain
DUF4423	PF14394.6	gi|296242833|ref|YP_003650320.1|	-	0.00012	21.9	0.3	0.0025	17.5	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
Stork_head	PF10264.9	gi|296242833|ref|YP_003650320.1|	-	0.086	13.0	0.1	1.5	9.0	0.0	2.2	1	1	1	2	2	2	0	Winged	helix	Storkhead-box1	domain
B5	PF03484.15	gi|296242833|ref|YP_003650320.1|	-	0.087	13.1	0.4	0.99	9.8	0.1	2.1	2	0	0	2	2	2	0	tRNA	synthetase	B5	domain
ORF_2_N	PF18492.1	gi|296242833|ref|YP_003650320.1|	-	0.096	12.9	0.0	0.14	12.3	0.0	1.2	1	0	0	1	1	1	0	Open	reading	frame	2	N-terminal	domain
HAD_2	PF13419.6	gi|296242834|ref|YP_003650321.1|	-	2.7e-14	53.6	0.0	5.9e-14	52.5	0.0	1.5	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|296242834|ref|YP_003650321.1|	-	4.3e-07	30.5	0.0	5.7e-07	30.1	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
TatD_DNase	PF01026.21	gi|296242835|ref|YP_003650322.1|	-	6.3e-45	153.5	0.0	8.8e-45	153.1	0.0	1.1	1	0	0	1	1	1	1	TatD	related	DNase
Baculo_LEF-2	PF03041.14	gi|296242835|ref|YP_003650322.1|	-	0.11	12.1	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	lef-2
ATG16	PF08614.11	gi|296242837|ref|YP_003650324.1|	-	0.00017	21.8	11.1	0.00037	20.8	11.1	1.4	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
Cep57_CLD	PF14073.6	gi|296242837|ref|YP_003650324.1|	-	0.00022	21.3	5.2	0.00032	20.8	5.2	1.3	1	0	0	1	1	1	1	Centrosome	localisation	domain	of	Cep57
DUF4201	PF13870.6	gi|296242837|ref|YP_003650324.1|	-	0.00054	19.7	7.5	0.0011	18.7	7.5	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4201)
HTH_40	PF14493.6	gi|296242837|ref|YP_003650324.1|	-	0.00066	20.1	1.4	0.0023	18.3	1.3	2.1	1	1	0	1	1	1	1	Helix-turn-helix	domain
GerE	PF00196.19	gi|296242837|ref|YP_003650324.1|	-	0.00091	18.7	0.0	0.002	17.6	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
DUF3489	PF11994.8	gi|296242837|ref|YP_003650324.1|	-	0.00099	19.1	0.4	0.0024	17.9	0.4	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3489)
Atg14	PF10186.9	gi|296242837|ref|YP_003650324.1|	-	0.0024	17.0	5.6	0.0029	16.7	5.6	1.1	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
CENP-F_leu_zip	PF10473.9	gi|296242837|ref|YP_003650324.1|	-	0.0025	17.8	14.2	0.007	16.4	14.2	1.7	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Cnn_1N	PF07989.11	gi|296242837|ref|YP_003650324.1|	-	0.0046	17.1	12.7	0.022	14.9	3.4	2.6	1	1	1	2	2	2	1	Centrosomin	N-terminal	motif	1
TMF_DNA_bd	PF12329.8	gi|296242837|ref|YP_003650324.1|	-	0.0053	16.7	17.8	0.47	10.5	7.2	2.7	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	DNA	binding
HTH_23	PF13384.6	gi|296242837|ref|YP_003650324.1|	-	0.0057	16.4	0.1	0.015	15.0	0.1	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|296242837|ref|YP_003650324.1|	-	0.007	16.0	0.6	0.053	13.2	0.0	2.6	3	0	0	3	3	2	1	Sigma-70,	region	4
Spc7	PF08317.11	gi|296242837|ref|YP_003650324.1|	-	0.0075	15.2	9.7	0.011	14.6	9.7	1.2	1	0	0	1	1	1	1	Spc7	kinetochore	protein
HOOK	PF05622.12	gi|296242837|ref|YP_003650324.1|	-	0.011	13.9	9.4	0.015	13.5	9.4	1.1	1	0	0	1	1	1	0	HOOK	protein
HTH_38	PF13936.6	gi|296242837|ref|YP_003650324.1|	-	0.012	15.4	0.1	0.038	13.8	0.1	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
APG6_N	PF17675.1	gi|296242837|ref|YP_003650324.1|	-	0.012	16.2	10.3	0.017	15.6	10.3	1.4	1	0	0	1	1	1	0	Apg6	coiled-coil	region
EzrA	PF06160.12	gi|296242837|ref|YP_003650324.1|	-	0.012	13.8	6.8	0.018	13.2	6.8	1.2	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
HTH_29	PF13551.6	gi|296242837|ref|YP_003650324.1|	-	0.013	15.5	0.0	0.026	14.6	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
FlaC_arch	PF05377.11	gi|296242837|ref|YP_003650324.1|	-	0.015	15.6	10.1	0.16	12.3	3.4	2.7	2	1	1	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
TolA_bind_tri	PF16331.5	gi|296242837|ref|YP_003650324.1|	-	0.017	15.2	10.5	0.028	14.5	2.7	2.5	1	1	1	2	2	2	0	TolA	binding	protein	trimerisation
PspA_IM30	PF04012.12	gi|296242837|ref|YP_003650324.1|	-	0.018	14.6	9.9	0.025	14.1	7.5	2.0	1	1	1	2	2	2	0	PspA/IM30	family
AAA_13	PF13166.6	gi|296242837|ref|YP_003650324.1|	-	0.02	13.6	2.2	0.022	13.5	2.2	1.1	1	0	0	1	1	1	0	AAA	domain
MAD	PF05557.13	gi|296242837|ref|YP_003650324.1|	-	0.021	13.2	10.5	0.032	12.6	10.5	1.2	1	0	0	1	1	1	0	Mitotic	checkpoint	protein
UPF0242	PF06785.11	gi|296242837|ref|YP_003650324.1|	-	0.029	14.5	7.0	0.042	13.9	7.0	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Jnk-SapK_ap_N	PF09744.9	gi|296242837|ref|YP_003650324.1|	-	0.03	14.5	7.2	0.059	13.6	7.2	1.5	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
TPR_MLP1_2	PF07926.12	gi|296242837|ref|YP_003650324.1|	-	0.031	14.3	13.9	0.06	13.4	12.5	2.2	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
HTH_5	PF01022.20	gi|296242837|ref|YP_003650324.1|	-	0.04	13.8	1.0	0.62	10.0	0.0	3.0	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
CEP209_CC5	PF16574.5	gi|296242837|ref|YP_003650324.1|	-	0.04	14.1	9.1	0.062	13.5	8.9	1.5	1	1	0	1	1	1	0	Coiled-coil	region	of	centrosome	protein	CE290
CorA	PF01544.18	gi|296242837|ref|YP_003650324.1|	-	0.049	12.9	2.6	0.075	12.3	2.6	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
HTH_20	PF12840.7	gi|296242837|ref|YP_003650324.1|	-	0.052	13.6	0.1	0.052	13.6	0.1	3.2	3	2	1	4	4	2	0	Helix-turn-helix	domain
ADIP	PF11559.8	gi|296242837|ref|YP_003650324.1|	-	0.058	13.5	8.3	0.11	12.6	8.3	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
HTH_11	PF08279.12	gi|296242837|ref|YP_003650324.1|	-	0.061	13.3	0.2	0.64	10.0	0.0	2.7	2	1	0	2	2	2	0	HTH	domain
FapA	PF03961.13	gi|296242837|ref|YP_003650324.1|	-	0.085	11.4	6.9	0.11	11.1	6.9	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
PaaX	PF07848.12	gi|296242837|ref|YP_003650324.1|	-	0.11	12.8	0.0	0.26	11.5	0.0	1.7	1	0	0	1	1	1	0	PaaX-like	protein
Nsp1_C	PF05064.13	gi|296242837|ref|YP_003650324.1|	-	0.11	12.3	7.3	0.2	11.5	7.3	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
Fmp27_WPPW	PF10359.9	gi|296242837|ref|YP_003650324.1|	-	0.12	11.2	5.9	0.19	10.6	5.9	1.3	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
CtIP_N	PF10482.9	gi|296242837|ref|YP_003650324.1|	-	0.12	12.4	7.3	0.25	11.4	7.3	1.5	1	0	0	1	1	1	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
IFT57	PF10498.9	gi|296242837|ref|YP_003650324.1|	-	0.14	11.1	6.0	0.2	10.6	6.0	1.2	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
NEMO	PF11577.8	gi|296242837|ref|YP_003650324.1|	-	0.15	12.1	10.6	1.3	9.1	0.3	2.4	2	0	0	2	2	2	0	NF-kappa-B	essential	modulator	NEMO
DUF1664	PF07889.12	gi|296242837|ref|YP_003650324.1|	-	0.19	11.8	1.5	0.42	10.6	1.5	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
TMF_TATA_bd	PF12325.8	gi|296242837|ref|YP_003650324.1|	-	0.22	11.8	12.5	0.45	10.7	12.5	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Laminin_II	PF06009.12	gi|296242837|ref|YP_003650324.1|	-	0.29	11.1	6.8	0.55	10.3	6.8	1.4	1	0	0	1	1	1	0	Laminin	Domain	II
PKcGMP_CC	PF16808.5	gi|296242837|ref|YP_003650324.1|	-	0.3	11.0	20.4	0.15	12.0	3.6	3.6	4	0	0	4	4	3	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
FPP	PF05911.11	gi|296242837|ref|YP_003650324.1|	-	0.34	9.0	14.3	0.48	8.5	13.8	1.4	1	1	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
DUF724	PF05266.14	gi|296242837|ref|YP_003650324.1|	-	0.36	10.6	8.2	0.25	11.1	6.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
DUF4200	PF13863.6	gi|296242837|ref|YP_003650324.1|	-	0.37	11.2	12.8	4.2	7.8	12.8	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
Seryl_tRNA_N	PF02403.22	gi|296242837|ref|YP_003650324.1|	-	0.43	10.8	8.7	1.2	9.4	8.7	1.8	1	0	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
bZIP_1	PF00170.21	gi|296242837|ref|YP_003650324.1|	-	0.49	10.5	22.2	0.15	12.2	5.3	2.7	2	1	1	3	3	2	0	bZIP	transcription	factor
Sigma70_ner	PF04546.13	gi|296242837|ref|YP_003650324.1|	-	0.5	10.2	6.9	1.4	8.7	6.9	1.7	1	1	0	1	1	1	0	Sigma-70,	non-essential	region
zf-CpG_bind_C	PF12269.8	gi|296242837|ref|YP_003650324.1|	-	0.63	9.8	3.1	0.95	9.2	3.1	1.3	1	0	0	1	1	1	0	CpG	binding	protein	zinc	finger	C	terminal	domain
DUF4140	PF13600.6	gi|296242837|ref|YP_003650324.1|	-	0.65	10.5	5.1	0.33	11.4	1.3	2.2	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
ACCA	PF03255.14	gi|296242837|ref|YP_003650324.1|	-	0.66	9.8	3.5	1.4	8.7	3.5	1.5	1	0	0	1	1	1	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
HAUS-augmin3	PF14932.6	gi|296242837|ref|YP_003650324.1|	-	0.66	9.5	10.0	0.18	11.4	7.4	1.5	2	0	0	2	2	1	0	HAUS	augmin-like	complex	subunit	3
BST2	PF16716.5	gi|296242837|ref|YP_003650324.1|	-	0.72	10.5	8.3	2	9.0	8.3	1.8	1	0	0	1	1	1	0	Bone	marrow	stromal	antigen	2
Fib_alpha	PF08702.10	gi|296242837|ref|YP_003650324.1|	-	0.84	9.8	4.2	2.2	8.4	4.2	1.8	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
YabA	PF06156.13	gi|296242837|ref|YP_003650324.1|	-	1.1	9.9	10.0	0.67	10.6	4.4	2.4	1	1	1	2	2	2	0	Initiation	control	protein	YabA
TMPIT	PF07851.13	gi|296242837|ref|YP_003650324.1|	-	1.5	8.0	4.3	2.3	7.4	4.3	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
KELK	PF15796.5	gi|296242837|ref|YP_003650324.1|	-	1.6	9.2	13.3	6.2	7.4	8.9	3.0	2	1	1	3	3	3	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
COG2	PF06148.11	gi|296242837|ref|YP_003650324.1|	-	2.2	8.4	7.2	2.2	8.4	5.4	1.9	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF3450	PF11932.8	gi|296242837|ref|YP_003650324.1|	-	2.5	7.3	10.0	6.1	6.1	0.9	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Nnf1	PF03980.14	gi|296242837|ref|YP_003650324.1|	-	2.6	8.5	11.6	2	8.8	1.6	2.9	3	0	0	3	3	2	0	Nnf1
TSC22	PF01166.18	gi|296242837|ref|YP_003650324.1|	-	3.4	8.0	11.3	4.8	7.6	2.0	3.5	1	1	2	3	3	3	0	TSC-22/dip/bun	family
XhlA	PF10779.9	gi|296242837|ref|YP_003650324.1|	-	4.2	7.7	10.6	5.3	7.3	4.8	3.0	2	1	1	3	3	3	0	Haemolysin	XhlA
Syntaxin-6_N	PF09177.11	gi|296242837|ref|YP_003650324.1|	-	4.5	7.9	6.9	4	8.1	3.6	2.3	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Lipoprotein_20	PF13942.6	gi|296242837|ref|YP_003650324.1|	-	5.7	6.8	9.5	9.5	6.1	0.7	2.0	1	1	1	2	2	2	0	YfhG	lipoprotein
Pox_A_type_inc	PF04508.12	gi|296242837|ref|YP_003650324.1|	-	6	6.9	9.7	4.1	7.4	0.3	3.6	3	1	1	4	4	3	0	Viral	A-type	inclusion	protein	repeat
TIL	PF01826.17	gi|296242839|ref|YP_003650326.1|	-	0.58	10.5	7.0	6.5	7.1	7.0	2.1	1	1	0	1	1	1	0	Trypsin	Inhibitor	like	cysteine	rich	domain
LPG_synthase_TM	PF03706.13	gi|296242840|ref|YP_003650327.1|	-	8.2e-18	65.0	17.3	1.3e-17	64.3	17.3	1.3	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
eRF1_2	PF03464.15	gi|296242841|ref|YP_003650328.1|	-	1.7e-40	138.4	0.0	2.8e-40	137.7	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	2
acVLRF1	PF18859.1	gi|296242841|ref|YP_003650328.1|	-	3.7e-19	69.3	0.0	1e-18	67.9	0.0	1.7	2	0	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
eRF1_3	PF03465.15	gi|296242841|ref|YP_003650328.1|	-	3.8e-19	69.2	1.0	8.9e-18	64.8	0.3	2.9	2	1	0	2	2	2	1	eRF1	domain	3
baeRF_family10	PF18854.1	gi|296242841|ref|YP_003650328.1|	-	3.3e-11	43.6	0.0	9.1e-11	42.2	0.0	1.8	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_1	PF03463.15	gi|296242841|ref|YP_003650328.1|	-	0.032	14.3	0.0	0.053	13.5	0.0	1.4	1	0	0	1	1	1	0	eRF1	domain	1
LIDHydrolase	PF10230.9	gi|296242841|ref|YP_003650328.1|	-	0.058	12.9	0.0	0.26	10.8	0.0	1.9	2	0	0	2	2	2	0	Lipid-droplet	associated	hydrolase
PhoU	PF01895.19	gi|296242843|ref|YP_003650330.1|	-	1.7e-24	86.1	17.3	1.1e-20	73.9	8.7	2.3	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|296242843|ref|YP_003650330.1|	-	1.3e-08	34.6	0.0	2.7e-08	33.5	0.0	1.6	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF86	PF01934.17	gi|296242843|ref|YP_003650330.1|	-	0.011	15.6	0.5	0.036	13.9	0.5	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF86
SeqA_N	PF17206.3	gi|296242843|ref|YP_003650330.1|	-	0.041	13.2	0.1	0.14	11.5	0.1	2.0	1	0	0	1	1	1	0	SeqA	protein	N-terminal	domain
Glyco_hydro_1	PF00232.18	gi|296242844|ref|YP_003650331.1|	-	1e-64	218.6	0.8	2.6e-50	171.2	0.1	3.1	2	1	0	2	2	2	2	Glycosyl	hydrolase	family	1
Cellulase	PF00150.18	gi|296242844|ref|YP_003650331.1|	-	0.016	14.6	0.1	0.033	13.6	0.1	1.5	1	0	0	1	1	1	0	Cellulase	(glycosyl	hydrolase	family	5)
RHH_1	PF01402.21	gi|296242844|ref|YP_003650331.1|	-	0.15	12.1	0.2	0.34	10.9	0.2	1.6	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
TrmO	PF01980.16	gi|296242845|ref|YP_003650332.1|	-	0.0026	17.9	0.0	0.0076	16.5	0.0	1.7	2	0	0	2	2	2	1	tRNA-methyltransferase	O
Glyco_hydro_cc	PF11790.8	gi|296242846|ref|YP_003650333.1|	-	0.0042	16.7	0.0	0.0066	16.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	catalytic	core
SBP_bac_5	PF00496.22	gi|296242847|ref|YP_003650334.1|	-	1.1e-51	175.9	5.0	1.7e-51	175.3	5.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Glycoprotein	PF03409.15	gi|296242847|ref|YP_003650334.1|	-	7.8	5.2	10.6	13	4.5	10.6	1.3	1	0	0	1	1	1	0	Transmembrane	glycoprotein
BPD_transp_1	PF00528.22	gi|296242848|ref|YP_003650335.1|	-	7.1e-31	107.4	15.9	7.1e-31	107.4	15.9	2.1	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|296242849|ref|YP_003650336.1|	-	2.8e-19	69.6	19.6	2.8e-19	69.6	19.6	1.4	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|296242849|ref|YP_003650336.1|	-	2.8e-06	27.2	1.3	2.8e-06	27.2	1.3	2.9	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|296242850|ref|YP_003650337.1|	-	4.2e-24	85.6	0.0	6.1e-24	85.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|296242850|ref|YP_003650337.1|	-	3.2e-20	72.4	0.1	5.4e-20	71.7	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|296242850|ref|YP_003650337.1|	-	0.00021	21.2	0.3	0.017	14.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|296242850|ref|YP_003650337.1|	-	0.0015	18.8	0.3	0.038	14.3	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|296242850|ref|YP_003650337.1|	-	0.0018	18.7	0.2	0.0085	16.5	0.3	2.2	2	1	0	2	2	2	1	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|296242850|ref|YP_003650337.1|	-	0.0062	15.8	2.0	0.0075	15.5	0.2	2.0	2	1	1	3	3	3	1	NB-ARC	domain
SMC_N	PF02463.19	gi|296242850|ref|YP_003650337.1|	-	0.0064	16.0	0.5	2.4	7.6	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|296242850|ref|YP_003650337.1|	-	0.0067	16.1	0.1	0.047	13.4	0.0	2.2	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|296242850|ref|YP_003650337.1|	-	0.011	15.7	0.1	0.053	13.4	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|296242850|ref|YP_003650337.1|	-	0.015	15.3	0.0	0.029	14.3	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
Adeno_IVa2	PF02456.15	gi|296242850|ref|YP_003650337.1|	-	0.017	13.9	0.0	0.032	13.0	0.0	1.4	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA	PF00004.29	gi|296242850|ref|YP_003650337.1|	-	0.02	15.3	0.2	0.065	13.7	0.2	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|296242850|ref|YP_003650337.1|	-	0.058	13.8	0.0	0.16	12.4	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
IstB_IS21	PF01695.17	gi|296242850|ref|YP_003650337.1|	-	0.07	12.9	0.1	2.6	7.8	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
PRK	PF00485.18	gi|296242850|ref|YP_003650337.1|	-	0.11	12.3	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_7	PF12775.7	gi|296242850|ref|YP_003650337.1|	-	0.13	11.7	0.0	0.23	11.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_33	PF13671.6	gi|296242850|ref|YP_003650337.1|	-	0.16	12.1	0.0	0.39	10.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|296242851|ref|YP_003650338.1|	-	1.3e-30	106.7	0.0	1.7e-30	106.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242851|ref|YP_003650338.1|	-	2.3e-06	27.6	0.9	0.031	14.1	0.1	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
oligo_HPY	PF08352.12	gi|296242851|ref|YP_003650338.1|	-	2.3e-05	24.8	0.0	4.9e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_16	PF13191.6	gi|296242851|ref|YP_003650338.1|	-	9.8e-05	22.8	0.0	0.00012	22.5	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|296242851|ref|YP_003650338.1|	-	0.00042	20.6	0.0	0.0013	19.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|296242851|ref|YP_003650338.1|	-	0.00082	19.1	0.0	0.0014	18.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.22	gi|296242851|ref|YP_003650338.1|	-	0.0014	17.9	0.0	0.0022	17.2	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
ATPase	PF06745.13	gi|296242851|ref|YP_003650338.1|	-	0.0025	17.2	0.1	0.35	10.2	0.0	2.2	2	0	0	2	2	2	1	KaiC
IstB_IS21	PF01695.17	gi|296242851|ref|YP_003650338.1|	-	0.0036	17.1	0.0	1.5	8.5	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|296242851|ref|YP_003650338.1|	-	0.0036	17.2	0.1	0.0069	16.3	0.1	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_25	PF13481.6	gi|296242851|ref|YP_003650338.1|	-	0.0087	15.6	0.0	0.17	11.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|296242851|ref|YP_003650338.1|	-	0.0094	15.7	0.0	0.012	15.3	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
TsaE	PF02367.17	gi|296242851|ref|YP_003650338.1|	-	0.011	15.8	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_18	PF13238.6	gi|296242851|ref|YP_003650338.1|	-	0.016	15.8	0.0	0.026	15.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|296242851|ref|YP_003650338.1|	-	0.016	15.1	0.0	0.027	14.4	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
Zeta_toxin	PF06414.12	gi|296242851|ref|YP_003650338.1|	-	0.016	14.5	0.0	0.028	13.7	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_30	PF13604.6	gi|296242851|ref|YP_003650338.1|	-	0.018	14.7	0.0	0.22	11.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|296242851|ref|YP_003650338.1|	-	0.021	14.8	0.0	0.037	14.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MobB	PF03205.14	gi|296242851|ref|YP_003650338.1|	-	0.033	14.1	0.0	0.061	13.2	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
G-alpha	PF00503.20	gi|296242851|ref|YP_003650338.1|	-	0.04	13.1	0.0	0.041	13.1	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
ATPase_2	PF01637.18	gi|296242851|ref|YP_003650338.1|	-	0.044	13.7	0.0	0.091	12.7	0.0	1.6	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_33	PF13671.6	gi|296242851|ref|YP_003650338.1|	-	0.048	13.8	0.0	0.077	13.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|296242851|ref|YP_003650338.1|	-	0.05	14.1	0.0	0.1	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|296242851|ref|YP_003650338.1|	-	0.063	13.7	0.0	0.16	12.4	0.0	1.8	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RPT	PF13446.6	gi|296242851|ref|YP_003650338.1|	-	0.076	12.9	0.0	0.57	10.1	0.0	2.1	2	0	0	2	2	2	0	A	repeated	domain	in	UCH-protein
APS_kinase	PF01583.20	gi|296242851|ref|YP_003650338.1|	-	0.087	12.7	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
KAP_NTPase	PF07693.14	gi|296242851|ref|YP_003650338.1|	-	0.11	11.7	0.2	0.17	11.1	0.2	1.3	1	0	0	1	1	1	0	KAP	family	P-loop	domain
Mg_chelatase	PF01078.21	gi|296242851|ref|YP_003650338.1|	-	0.12	11.7	0.0	0.21	10.9	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DUF87	PF01935.17	gi|296242851|ref|YP_003650338.1|	-	0.13	12.4	0.1	0.46	10.5	0.1	1.8	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_7	PF12775.7	gi|296242851|ref|YP_003650338.1|	-	0.18	11.3	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Phage_holin_3_7	PF05449.11	gi|296242852|ref|YP_003650339.1|	-	0.0018	18.2	0.4	0.002	18.1	0.4	1.1	1	0	0	1	1	1	1	Putative	3TM	holin,	Phage_holin_3
DUF1430	PF07242.11	gi|296242852|ref|YP_003650339.1|	-	0.034	14.4	4.2	0.035	14.4	4.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1430)
DUF4191	PF13829.6	gi|296242852|ref|YP_003650339.1|	-	0.096	12.0	2.6	0.093	12.1	2.6	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
DUF2254	PF10011.9	gi|296242852|ref|YP_003650339.1|	-	0.23	10.3	3.3	0.24	10.2	3.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2254)
Glyco_hydro_16	PF00722.21	gi|296242853|ref|YP_003650340.1|	-	4.4e-35	120.7	0.2	7.2e-35	120.0	0.2	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	16
SKN1	PF03935.15	gi|296242853|ref|YP_003650340.1|	-	2.6e-16	59.1	4.1	9e-08	31.0	0.1	2.4	3	0	0	3	3	3	2	Beta-glucan	synthesis-associated	protein	(SKN1)
DUF2401	PF10287.9	gi|296242853|ref|YP_003650340.1|	-	0.016	14.8	0.0	0.028	14.0	0.0	1.3	1	0	0	1	1	1	0	Putative	TOS1-like	glycosyl	hydrolase	(DUF2401)
YlmH_RBD	PF17774.1	gi|296242853|ref|YP_003650340.1|	-	0.1	12.9	0.1	1.7	9.0	0.0	2.3	2	0	0	2	2	2	0	Putative	RNA-binding	domain	in	YlmH
TMEM154	PF15102.6	gi|296242853|ref|YP_003650340.1|	-	0.36	10.7	6.2	0.68	9.8	6.2	1.4	1	0	0	1	1	1	0	TMEM154	protein	family
MFS_1	PF07690.16	gi|296242854|ref|YP_003650341.1|	-	9.7e-09	34.6	35.1	1.3e-08	34.1	34.6	1.5	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
SBP_bac_1	PF01547.25	gi|296242855|ref|YP_003650342.1|	-	5.5e-32	112.0	13.5	7.6e-31	108.2	13.5	2.1	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|296242855|ref|YP_003650342.1|	-	1.7e-19	70.7	5.4	2.5e-19	70.2	5.4	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|296242856|ref|YP_003650343.1|	-	4.1e-15	56.0	15.4	4.1e-15	56.0	15.4	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF5488	PF17590.2	gi|296242856|ref|YP_003650343.1|	-	0.044	13.5	3.6	0.069	12.9	0.3	2.6	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5488)
SdpI	PF13630.6	gi|296242856|ref|YP_003650343.1|	-	0.12	12.5	0.1	0.12	12.5	0.1	3.8	4	0	0	4	4	4	0	SdpI/YhfL	protein	family
BPD_transp_1	PF00528.22	gi|296242857|ref|YP_003650344.1|	-	6e-23	81.5	17.3	6e-23	81.5	17.3	2.2	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
CoxIIa	PF08113.11	gi|296242857|ref|YP_003650344.1|	-	0.71	9.7	7.1	0.23	11.3	1.0	2.8	2	0	0	2	2	2	0	Cytochrome	c	oxidase	subunit	IIa	family
ABC_tran	PF00005.27	gi|296242858|ref|YP_003650345.1|	-	2.6e-35	121.9	0.0	4e-35	121.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|296242858|ref|YP_003650345.1|	-	1.4e-08	35.0	0.6	0.0041	17.0	0.1	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|296242858|ref|YP_003650345.1|	-	5.9e-05	23.5	0.1	0.00027	21.4	0.1	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
Rad17	PF03215.15	gi|296242858|ref|YP_003650345.1|	-	9.1e-05	22.5	0.0	0.00016	21.7	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
SMC_N	PF02463.19	gi|296242858|ref|YP_003650345.1|	-	0.0002	20.9	0.2	0.0019	17.7	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|296242858|ref|YP_003650345.1|	-	0.00038	20.9	0.5	0.0022	18.4	0.5	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|296242858|ref|YP_003650345.1|	-	0.00078	19.4	0.1	0.0013	18.7	0.1	1.5	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|296242858|ref|YP_003650345.1|	-	0.0016	18.7	0.0	0.0026	18.0	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|296242858|ref|YP_003650345.1|	-	0.0024	17.6	0.0	0.0047	16.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|296242858|ref|YP_003650345.1|	-	0.0026	17.8	0.0	0.006	16.6	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|296242858|ref|YP_003650345.1|	-	0.003	18.1	0.2	0.044	14.3	0.1	2.5	2	1	1	3	3	3	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|296242858|ref|YP_003650345.1|	-	0.0065	16.4	0.2	0.013	15.4	0.2	1.5	1	0	0	1	1	1	1	RsgA	GTPase
cobW	PF02492.19	gi|296242858|ref|YP_003650345.1|	-	0.01	15.4	0.1	0.019	14.5	0.1	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
RecA	PF00154.21	gi|296242858|ref|YP_003650345.1|	-	0.011	15.3	0.0	0.023	14.2	0.0	1.5	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
NACHT	PF05729.12	gi|296242858|ref|YP_003650345.1|	-	0.011	15.7	0.1	0.024	14.5	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.14	gi|296242858|ref|YP_003650345.1|	-	0.012	15.7	0.2	0.07	13.1	0.1	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
SbcCD_C	PF13558.6	gi|296242858|ref|YP_003650345.1|	-	0.013	15.7	0.1	0.13	12.6	0.1	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_19	PF13245.6	gi|296242858|ref|YP_003650345.1|	-	0.013	15.8	0.0	0.031	14.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
RuvB_N	PF05496.12	gi|296242858|ref|YP_003650345.1|	-	0.022	14.5	0.0	0.051	13.3	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_24	PF13479.6	gi|296242858|ref|YP_003650345.1|	-	0.027	14.2	0.0	0.29	10.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|296242858|ref|YP_003650345.1|	-	0.029	14.1	0.1	0.053	13.3	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
GvpD	PF07088.11	gi|296242858|ref|YP_003650345.1|	-	0.046	12.3	0.0	0.25	9.9	0.0	2.0	2	0	0	2	2	2	0	GvpD	gas	vesicle	protein
AAA_33	PF13671.6	gi|296242858|ref|YP_003650345.1|	-	0.049	13.8	0.1	0.12	12.5	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|296242858|ref|YP_003650345.1|	-	0.05	13.0	0.0	0.1	12.0	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_28	PF13521.6	gi|296242858|ref|YP_003650345.1|	-	0.058	13.6	0.1	0.13	12.5	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|296242858|ref|YP_003650345.1|	-	0.066	11.8	0.0	0.13	10.8	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|296242858|ref|YP_003650345.1|	-	0.067	12.2	0.0	0.12	11.4	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_23	PF13476.6	gi|296242858|ref|YP_003650345.1|	-	0.079	13.5	0.5	0.17	12.4	0.1	1.7	2	0	0	2	2	1	0	AAA	domain
AAA_17	PF13207.6	gi|296242858|ref|YP_003650345.1|	-	0.096	13.1	0.4	0.37	11.2	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|296242858|ref|YP_003650345.1|	-	0.15	12.5	0.0	0.36	11.2	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
Zeta_toxin	PF06414.12	gi|296242858|ref|YP_003650345.1|	-	0.16	11.3	0.0	0.28	10.4	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_25	PF13481.6	gi|296242858|ref|YP_003650345.1|	-	0.16	11.5	0.1	0.38	10.3	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|296242858|ref|YP_003650345.1|	-	0.16	11.7	0.2	0.49	10.1	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
ABC_tran	PF00005.27	gi|296242859|ref|YP_003650346.1|	-	1.5e-31	109.8	0.0	3.3e-31	108.6	0.0	1.6	2	0	0	2	2	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|296242859|ref|YP_003650346.1|	-	4.4e-08	33.2	0.0	1e-07	32.0	0.0	1.7	1	0	0	1	1	1	1	TOBE	domain
TOBE	PF03459.17	gi|296242859|ref|YP_003650346.1|	-	5.4e-06	26.6	0.0	4.7e-05	23.6	0.0	2.2	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|296242859|ref|YP_003650346.1|	-	5.8e-06	26.3	0.1	0.0013	18.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
OB_MalK	PF17912.1	gi|296242859|ref|YP_003650346.1|	-	3.4e-05	24.6	0.0	0.00024	21.9	0.0	2.5	3	0	0	3	3	2	1	MalK	OB	fold	domain
AAA_23	PF13476.6	gi|296242859|ref|YP_003650346.1|	-	0.00043	20.8	1.5	0.001	19.6	0.3	1.9	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|296242859|ref|YP_003650346.1|	-	0.00071	19.5	0.0	0.0012	18.8	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
ATPase_2	PF01637.18	gi|296242859|ref|YP_003650346.1|	-	0.0019	18.1	0.2	0.0046	16.9	0.0	1.9	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|296242859|ref|YP_003650346.1|	-	0.003	17.9	0.1	0.0063	16.9	0.0	1.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|296242859|ref|YP_003650346.1|	-	0.0031	17.3	0.6	0.26	11.0	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|296242859|ref|YP_003650346.1|	-	0.0065	16.2	0.0	0.022	14.5	0.0	1.9	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|296242859|ref|YP_003650346.1|	-	0.0073	16.2	0.0	0.018	15.0	0.0	1.6	1	0	0	1	1	1	1	RsgA	GTPase
AAA	PF00004.29	gi|296242859|ref|YP_003650346.1|	-	0.014	15.9	0.2	0.11	12.9	0.2	2.4	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.6	gi|296242859|ref|YP_003650346.1|	-	0.017	15.1	0.1	0.55	10.3	0.0	2.8	2	1	1	3	3	3	0	AAA	domain
DLIC	PF05783.11	gi|296242859|ref|YP_003650346.1|	-	0.019	13.8	0.0	0.073	11.9	0.0	1.9	1	1	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA_22	PF13401.6	gi|296242859|ref|YP_003650346.1|	-	0.035	14.4	0.1	0.068	13.4	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|296242859|ref|YP_003650346.1|	-	0.039	14.2	0.0	0.095	12.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|296242859|ref|YP_003650346.1|	-	0.047	13.1	2.1	3.9	6.8	0.1	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
NACHT	PF05729.12	gi|296242859|ref|YP_003650346.1|	-	0.048	13.6	0.1	0.094	12.6	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.22	gi|296242859|ref|YP_003650346.1|	-	0.17	11.0	0.0	0.35	10.0	0.0	1.5	1	0	0	1	1	1	0	NB-ARC	domain
SVM_signal	PF12113.8	gi|296242860|ref|YP_003650347.1|	-	0.014	15.3	3.3	0.014	15.3	3.3	3.0	3	1	0	3	3	3	0	SVM	protein	signal	sequence
Bac_rhodopsin	PF01036.18	gi|296242860|ref|YP_003650347.1|	-	0.023	14.3	6.2	0.027	14.0	6.2	1.0	1	0	0	1	1	1	0	Bacteriorhodopsin-like	protein
DUF2304	PF10066.9	gi|296242860|ref|YP_003650347.1|	-	0.046	13.9	12.0	0.056	13.7	12.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2304)
AgrB	PF04647.15	gi|296242860|ref|YP_003650347.1|	-	0.15	11.3	11.8	0.18	11.1	11.8	1.1	1	0	0	1	1	1	0	Accessory	gene	regulator	B
DUF4064	PF13273.6	gi|296242860|ref|YP_003650347.1|	-	0.78	10.0	15.0	0.42	10.9	7.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
DUF3392	PF11872.8	gi|296242860|ref|YP_003650347.1|	-	0.8	10.0	9.2	0.33	11.2	5.4	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3392)
SUR7	PF06687.12	gi|296242860|ref|YP_003650347.1|	-	0.92	9.1	7.3	0.45	10.1	4.7	1.7	1	1	1	2	2	2	0	SUR7/PalI	family
DUF2663	PF10864.8	gi|296242860|ref|YP_003650347.1|	-	1	9.8	3.3	1.3	9.5	3.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2663)
GFO_IDH_MocA	PF01408.22	gi|296242861|ref|YP_003650348.1|	-	2.4e-16	60.6	0.0	4.7e-16	59.7	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
G6PD_N	PF00479.22	gi|296242861|ref|YP_003650348.1|	-	0.0025	18.5	0.1	0.0041	17.8	0.1	1.3	1	0	0	1	1	1	1	Glucose-6-phosphate	dehydrogenase,	NAD	binding	domain
OCD_Mu_crystall	PF02423.15	gi|296242861|ref|YP_003650348.1|	-	0.073	12.0	0.0	0.11	11.4	0.0	1.3	1	0	0	1	1	1	0	Ornithine	cyclodeaminase/mu-crystallin	family
Fucose_iso_C	PF02952.17	gi|296242862|ref|YP_003650349.1|	-	0.2	11.3	0.0	0.38	10.5	0.0	1.6	1	1	0	1	1	1	0	L-fucose	isomerase,	C-terminal	domain
BPD_transp_2	PF02653.16	gi|296242863|ref|YP_003650350.1|	-	3.1e-34	118.4	26.8	4e-34	118.0	26.8	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|296242864|ref|YP_003650351.1|	-	3.7e-35	121.4	27.5	3.7e-35	121.4	27.5	1.5	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
Luteo_PO	PF04662.13	gi|296242864|ref|YP_003650351.1|	-	0.027	14.2	0.0	0.041	13.5	0.0	1.2	1	0	0	1	1	1	0	Luteovirus	P0	protein
ABC_tran	PF00005.27	gi|296242865|ref|YP_003650352.1|	-	2.4e-43	147.9	0.0	4.7e-29	101.6	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|296242865|ref|YP_003650352.1|	-	1.4e-09	38.3	1.0	0.00034	20.5	0.2	2.4	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|296242865|ref|YP_003650352.1|	-	0.00096	18.8	0.3	0.085	12.6	0.1	2.9	3	0	0	3	3	3	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|296242865|ref|YP_003650352.1|	-	0.017	15.6	0.0	0.039	14.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.18	gi|296242865|ref|YP_003650352.1|	-	0.1	12.4	0.9	0.34	10.7	0.0	2.2	3	0	0	3	3	3	0	Bacterial	dnaA	protein
AAA_13	PF13166.6	gi|296242865|ref|YP_003650352.1|	-	0.14	10.8	0.1	0.2	10.3	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|296242865|ref|YP_003650352.1|	-	0.16	11.7	0.1	0.89	9.2	0.0	1.9	1	1	0	2	2	2	0	AAA	ATPase	domain
DUF3584	PF12128.8	gi|296242865|ref|YP_003650352.1|	-	0.33	8.4	0.2	0.45	8.0	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_22	PF13401.6	gi|296242865|ref|YP_003650352.1|	-	0.41	10.9	2.9	7.4	6.8	0.0	2.9	3	0	0	3	3	3	0	AAA	domain
Bmp	PF02608.14	gi|296242866|ref|YP_003650353.1|	-	1e-45	156.0	0.3	2.5e-45	154.7	0.3	1.5	1	1	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
EamA	PF00892.20	gi|296242867|ref|YP_003650354.1|	-	5e-20	72.1	42.9	6.8e-18	65.2	15.1	2.6	2	1	0	2	2	2	2	EamA-like	transporter	family
DUF5357	PF17310.2	gi|296242867|ref|YP_003650354.1|	-	0.088	11.3	1.0	0.13	10.7	0.1	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5357)
MS_channel	PF00924.18	gi|296242867|ref|YP_003650354.1|	-	2.5	7.6	6.9	7.1	6.1	6.9	1.8	1	0	0	1	1	1	0	Mechanosensitive	ion	channel
NAD_binding_2	PF03446.15	gi|296242868|ref|YP_003650355.1|	-	5.4e-27	94.9	0.0	6.9e-27	94.6	0.0	1.1	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|296242868|ref|YP_003650355.1|	-	7.1e-07	29.7	0.0	1.2e-06	29.0	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|296242868|ref|YP_003650355.1|	-	1.6e-06	27.6	0.0	2.1e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|296242868|ref|YP_003650355.1|	-	1.8e-06	28.1	0.1	2.7e-06	27.5	0.1	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_11	PF14833.6	gi|296242868|ref|YP_003650355.1|	-	5.3e-05	23.4	0.0	9.9e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|296242868|ref|YP_003650355.1|	-	0.00016	22.5	0.0	0.00025	21.9	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
3HCDH_N	PF02737.18	gi|296242868|ref|YP_003650355.1|	-	0.00024	21.0	0.6	0.004	17.1	0.0	2.0	1	1	1	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|296242868|ref|YP_003650355.1|	-	0.00034	20.3	0.0	0.0005	19.7	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.23	gi|296242868|ref|YP_003650355.1|	-	0.016	15.2	0.0	0.023	14.7	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
IlvN	PF07991.12	gi|296242868|ref|YP_003650355.1|	-	0.029	13.9	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
TrkA_N	PF02254.18	gi|296242868|ref|YP_003650355.1|	-	0.063	13.5	0.6	1.1	9.6	0.6	2.2	1	1	0	1	1	1	0	TrkA-N	domain
CoA_binding	PF02629.19	gi|296242868|ref|YP_003650355.1|	-	0.067	13.9	0.0	0.21	12.3	0.0	1.8	1	1	0	1	1	1	0	CoA	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|296242868|ref|YP_003650355.1|	-	0.08	13.2	0.0	0.23	11.7	0.0	1.7	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Lactamase_B	PF00753.27	gi|296242869|ref|YP_003650356.1|	-	4.4e-07	30.1	0.0	7.8e-07	29.3	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|296242869|ref|YP_003650356.1|	-	0.0064	16.0	0.0	0.021	14.4	0.0	1.8	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|296242869|ref|YP_003650356.1|	-	0.0071	16.3	0.0	0.013	15.4	0.0	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Imm59	PF15597.6	gi|296242869|ref|YP_003650356.1|	-	0.2	12.1	2.2	0.21	12.1	0.7	1.7	2	0	0	2	2	2	0	Immunity	protein	59
TM_helix	PF05552.12	gi|296242870|ref|YP_003650357.1|	-	8.8e-08	32.0	73.6	6.1e-05	22.9	2.0	6.9	7	1	0	7	7	7	5	Conserved	TM	helix
Linocin_M18	PF04454.12	gi|296242871|ref|YP_003650358.1|	-	2.6e-28	99.0	0.3	9.2e-28	97.2	0.0	1.9	2	0	0	2	2	2	1	Encapsulating	protein	for	peroxidase
Rubrerythrin	PF02915.17	gi|296242871|ref|YP_003650358.1|	-	5.1e-09	36.7	0.1	7.6e-09	36.1	0.1	1.3	1	0	0	1	1	1	1	Rubrerythrin
DUF2383	PF09537.10	gi|296242871|ref|YP_003650358.1|	-	0.0045	17.3	0.2	0.012	15.9	0.1	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF2383)
Ferritin	PF00210.24	gi|296242871|ref|YP_003650358.1|	-	0.019	14.9	0.0	0.035	14.0	0.0	1.5	1	0	0	1	1	1	0	Ferritin-like	domain
DUF2807	PF10988.8	gi|296242872|ref|YP_003650359.1|	-	0.17	11.6	1.3	3.5	7.4	0.1	2.4	2	1	0	2	2	2	0	Putative	auto-transporter	adhesin,	head	GIN	domain
PhoU_div	PF01865.16	gi|296242873|ref|YP_003650360.1|	-	1.4e-18	67.1	10.9	1.6e-18	66.8	10.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
BLOC1_2	PF10046.9	gi|296242873|ref|YP_003650360.1|	-	0.0014	18.9	6.8	0.0085	16.4	1.5	2.6	2	1	0	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
PhoU	PF01895.19	gi|296242873|ref|YP_003650360.1|	-	0.031	14.7	8.9	0.27	11.7	2.0	2.6	2	1	1	3	3	3	0	PhoU	domain
DUF948	PF06103.11	gi|296242873|ref|YP_003650360.1|	-	0.077	13.3	2.6	26	5.2	0.0	3.2	2	2	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
RecG_N	PF17190.4	gi|296242873|ref|YP_003650360.1|	-	0.38	11.5	8.5	2.8	8.7	1.0	2.6	2	1	0	2	2	2	0	RecG	N-terminal	helical	domain
DUF5446	PF17522.2	gi|296242873|ref|YP_003650360.1|	-	0.95	9.7	8.2	0.17	12.1	2.3	2.5	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5446)
Fib_alpha	PF08702.10	gi|296242873|ref|YP_003650360.1|	-	1.7	8.8	6.8	3.7	7.7	1.0	2.4	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
ACCA	PF03255.14	gi|296242873|ref|YP_003650360.1|	-	6	6.7	6.9	5.3	6.9	1.4	2.2	2	0	0	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
Bac_small_YrzI	PF09501.10	gi|296242873|ref|YP_003650360.1|	-	6.6	7.0	8.6	0.42	10.8	2.1	2.2	2	0	0	2	2	2	0	Probable	sporulation	protein	(Bac_small_yrzI)
Cep57_CLD_2	PF14197.6	gi|296242873|ref|YP_003650360.1|	-	7.3	6.8	8.3	2.2	8.4	1.9	2.3	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
PHO4	PF01384.20	gi|296242874|ref|YP_003650361.1|	-	3.4e-66	223.6	35.6	2.2e-65	220.9	35.6	1.9	1	1	0	1	1	1	1	Phosphate	transporter	family
Inositol_P	PF00459.25	gi|296242875|ref|YP_003650362.1|	-	2.3e-12	47.0	0.0	3e-12	46.6	0.0	1.1	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|296242875|ref|YP_003650362.1|	-	1.4e-07	31.1	0.0	2.1e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase,	N-terminal	domain
Peptidase_M24	PF00557.24	gi|296242876|ref|YP_003650363.1|	-	2.7e-57	193.9	0.0	3.5e-57	193.5	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|296242876|ref|YP_003650363.1|	-	1.8e-14	54.5	0.0	8.2e-14	52.4	0.0	1.9	2	0	0	2	2	2	1	Creatinase/Prolidase	N-terminal	domain
Aminotran_5	PF00266.19	gi|296242879|ref|YP_003650366.1|	-	1.5e-35	122.9	0.0	1.6e-35	122.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|296242879|ref|YP_003650366.1|	-	2.2e-05	23.8	0.0	3.1e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
GDC-P	PF02347.16	gi|296242879|ref|YP_003650366.1|	-	0.00067	18.6	0.0	0.00097	18.1	0.0	1.2	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
2-Hacid_dh_C	PF02826.19	gi|296242880|ref|YP_003650367.1|	-	4.2e-71	238.0	0.1	8.9e-71	236.9	0.0	1.5	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|296242880|ref|YP_003650367.1|	-	4.2e-37	126.8	0.2	4.9e-37	126.6	0.2	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|296242880|ref|YP_003650367.1|	-	3.2e-07	30.7	0.1	2.9e-06	27.6	0.0	2.2	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
IlvN	PF07991.12	gi|296242880|ref|YP_003650367.1|	-	3.8e-05	23.3	0.1	0.00087	18.9	0.0	2.6	3	0	0	3	3	3	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
F420_oxidored	PF03807.17	gi|296242880|ref|YP_003650367.1|	-	0.00045	20.7	0.2	0.022	15.3	0.0	2.8	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
AdoHcyase_NAD	PF00670.21	gi|296242880|ref|YP_003650367.1|	-	0.005	16.9	0.2	0.018	15.1	0.0	1.8	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|296242880|ref|YP_003650367.1|	-	0.0093	16.2	0.8	1.7	8.9	0.2	2.8	2	2	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
Shikimate_DH	PF01488.20	gi|296242880|ref|YP_003650367.1|	-	0.013	15.6	0.9	0.38	10.8	0.1	2.3	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
XdhC_C	PF13478.6	gi|296242880|ref|YP_003650367.1|	-	0.037	14.5	0.1	4.9	7.7	0.0	2.5	2	2	0	2	2	2	0	XdhC	Rossmann	domain
Rossmann-like	PF10727.9	gi|296242880|ref|YP_003650367.1|	-	0.041	13.8	0.1	0.1	12.5	0.1	1.6	1	0	0	1	1	1	0	Rossmann-like	domain
Nitro_FeMo-Co	PF02579.17	gi|296242880|ref|YP_003650367.1|	-	0.058	13.7	0.9	14	6.1	0.0	2.8	3	0	0	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
3HCDH_N	PF02737.18	gi|296242880|ref|YP_003650367.1|	-	0.07	13.0	0.5	0.47	10.3	0.1	2.2	2	1	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ParBc	PF02195.18	gi|296242881|ref|YP_003650368.1|	-	3.5e-09	36.8	0.0	8.1e-09	35.7	0.0	1.6	1	0	0	1	1	1	1	ParB-like	nuclease	domain
DUF1015	PF06245.11	gi|296242881|ref|YP_003650368.1|	-	1.6e-06	27.3	0.1	5.1e-06	25.6	0.1	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1015)
VbhA	PF18495.1	gi|296242881|ref|YP_003650368.1|	-	0.032	14.1	0.1	0.11	12.4	0.1	1.9	1	0	0	1	1	1	0	Antitoxin	VbhA
MinC_N	PF05209.13	gi|296242881|ref|YP_003650368.1|	-	0.041	13.8	0.7	0.1	12.6	0.3	1.9	2	0	0	2	2	2	0	Septum	formation	inhibitor	MinC,	N-terminal	domain
CarboxypepD_reg	PF13620.6	gi|296242882|ref|YP_003650369.1|	-	5.1e-06	26.7	0.0	5.1e-06	26.7	0.0	4.6	5	1	0	5	5	5	2	Carboxypeptidase	regulatory-like	domain
Transglut_core2	PF13369.6	gi|296242883|ref|YP_003650370.1|	-	0.2	11.2	0.0	0.38	10.3	0.0	1.5	1	1	0	1	1	1	0	Transglutaminase-like	superfamily
DUF402	PF04167.13	gi|296242884|ref|YP_003650371.1|	-	1.7e-11	44.2	0.1	3.4e-11	43.2	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
RNase_E_G	PF10150.9	gi|296242884|ref|YP_003650371.1|	-	0.00061	19.3	0.0	0.00092	18.7	0.0	1.3	1	0	0	1	1	1	1	Ribonuclease	E/G	family
UPF0147	PF03685.13	gi|296242885|ref|YP_003650372.1|	-	7e-35	118.9	2.2	7.9e-35	118.8	2.2	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0147)
HEAT_PBS	PF03130.16	gi|296242885|ref|YP_003650372.1|	-	0.013	16.1	0.1	0.043	14.5	0.1	1.9	2	0	0	2	2	2	0	PBS	lyase	HEAT-like	repeat
HEAT_2	PF13646.6	gi|296242885|ref|YP_003650372.1|	-	0.023	15.1	0.2	0.039	14.4	0.2	1.6	1	1	0	1	1	1	0	HEAT	repeats
UPF0253	PF06786.12	gi|296242885|ref|YP_003650372.1|	-	0.062	13.6	0.2	6.2	7.2	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0253)
Auto_anti-p27	PF06677.12	gi|296242886|ref|YP_003650373.1|	-	1.8e-12	47.2	0.3	2.6e-12	46.7	0.3	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Thymidylate_kin	PF02223.17	gi|296242887|ref|YP_003650374.1|	-	3e-38	131.4	0.0	3.6e-38	131.1	0.0	1.1	1	0	0	1	1	1	1	Thymidylate	kinase
dNK	PF01712.19	gi|296242887|ref|YP_003650374.1|	-	7.6e-08	32.5	0.1	8.8e-07	29.0	0.1	2.2	1	1	0	1	1	1	1	Deoxynucleoside	kinase
AAA_28	PF13521.6	gi|296242887|ref|YP_003650374.1|	-	7.8e-05	23.0	0.0	0.0001	22.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|296242887|ref|YP_003650374.1|	-	0.0002	21.9	0.0	0.00094	19.7	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|296242887|ref|YP_003650374.1|	-	0.00045	20.6	0.0	0.0022	18.4	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|296242887|ref|YP_003650374.1|	-	0.0032	17.6	0.0	0.0046	17.1	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|296242887|ref|YP_003650374.1|	-	0.0048	17.2	0.0	0.022	15.0	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|296242887|ref|YP_003650374.1|	-	0.017	15.1	0.1	0.036	14.0	0.0	1.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|296242887|ref|YP_003650374.1|	-	0.017	14.3	0.1	0.074	12.2	0.1	1.8	2	0	0	2	2	2	0	NB-ARC	domain
NACHT	PF05729.12	gi|296242887|ref|YP_003650374.1|	-	0.018	15.0	0.0	0.03	14.2	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
APS_kinase	PF01583.20	gi|296242887|ref|YP_003650374.1|	-	0.019	14.9	0.0	0.062	13.2	0.0	1.8	2	0	0	2	2	2	0	Adenylylsulphate	kinase
RNA_helicase	PF00910.22	gi|296242887|ref|YP_003650374.1|	-	0.024	15.0	0.0	0.046	14.1	0.0	1.6	1	1	0	1	1	1	0	RNA	helicase
Arf	PF00025.21	gi|296242887|ref|YP_003650374.1|	-	0.025	14.1	0.0	0.039	13.4	0.0	1.3	1	0	0	1	1	1	0	ADP-ribosylation	factor	family
TsaE	PF02367.17	gi|296242887|ref|YP_003650374.1|	-	0.029	14.4	0.0	0.058	13.4	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
MobB	PF03205.14	gi|296242887|ref|YP_003650374.1|	-	0.03	14.2	0.0	0.053	13.4	0.0	1.3	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SKI	PF01202.22	gi|296242887|ref|YP_003650374.1|	-	0.038	14.1	0.2	9	6.4	0.0	2.2	2	0	0	2	2	2	0	Shikimate	kinase
DUF815	PF05673.13	gi|296242887|ref|YP_003650374.1|	-	0.038	13.1	0.1	3.5	6.7	0.0	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
KAP_NTPase	PF07693.14	gi|296242887|ref|YP_003650374.1|	-	0.047	12.9	0.0	0.085	12.1	0.0	1.3	1	1	0	1	1	1	0	KAP	family	P-loop	domain
Zeta_toxin	PF06414.12	gi|296242887|ref|YP_003650374.1|	-	0.05	12.9	0.0	0.11	11.7	0.0	1.6	2	0	0	2	2	2	0	Zeta	toxin
MeaB	PF03308.16	gi|296242887|ref|YP_003650374.1|	-	0.052	12.5	0.0	0.44	9.5	0.0	1.9	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ATP-synt_F6	PF05511.11	gi|296242887|ref|YP_003650374.1|	-	0.054	13.9	0.1	0.11	12.9	0.1	1.5	1	0	0	1	1	1	0	Mitochondrial	ATP	synthase	coupling	factor	6
ABC_tran	PF00005.27	gi|296242887|ref|YP_003650374.1|	-	0.069	13.7	0.0	0.12	12.9	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
AAA_16	PF13191.6	gi|296242887|ref|YP_003650374.1|	-	0.094	13.1	0.0	0.27	11.6	0.0	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|296242887|ref|YP_003650374.1|	-	0.12	12.2	0.0	0.28	11.1	0.0	1.5	1	0	0	1	1	1	0	NTPase
AAA	PF00004.29	gi|296242887|ref|YP_003650374.1|	-	0.16	12.4	0.0	0.32	11.4	0.0	1.6	2	0	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF126	PF01989.16	gi|296242888|ref|YP_003650375.1|	-	6.8e-27	93.1	0.1	9e-27	92.7	0.1	1.2	1	0	0	1	1	1	1	Aconitase	X	swivel	domain
DNA_pol3_alpha	PF07733.12	gi|296242888|ref|YP_003650375.1|	-	0.17	11.4	0.0	0.19	11.3	0.0	1.1	1	0	0	1	1	1	0	Bacterial	DNA	polymerase	III	alpha	NTPase	domain
DUF521	PF04412.13	gi|296242889|ref|YP_003650376.1|	-	6.6e-117	390.6	0.0	7.4e-117	390.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
UbiD	PF01977.16	gi|296242890|ref|YP_003650377.1|	-	7.2e-70	235.9	0.0	8.2e-70	235.7	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
VanW	PF04294.13	gi|296242890|ref|YP_003650377.1|	-	0.16	11.6	0.0	0.28	10.8	0.0	1.3	1	0	0	1	1	1	0	VanW	like	protein
CLP1_P	PF16575.5	gi|296242891|ref|YP_003650378.1|	-	7.6e-43	146.5	0.0	1.1e-42	145.9	0.0	1.3	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
ATPase	PF06745.13	gi|296242893|ref|YP_003650380.1|	-	6.4e-07	29.0	0.0	0.0044	16.4	0.0	2.1	1	1	1	2	2	2	2	KaiC
AAA_24	PF13479.6	gi|296242893|ref|YP_003650380.1|	-	1.8e-06	27.8	0.0	4.1e-06	26.6	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
Rad51	PF08423.11	gi|296242893|ref|YP_003650380.1|	-	0.0013	18.0	0.3	0.0045	16.3	0.3	1.8	1	1	0	1	1	1	1	Rad51
AAA_16	PF13191.6	gi|296242893|ref|YP_003650380.1|	-	0.0031	17.9	0.0	0.0036	17.7	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|296242893|ref|YP_003650380.1|	-	0.004	16.8	0.0	0.009	15.6	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|296242893|ref|YP_003650380.1|	-	0.0058	16.4	0.0	0.01	15.6	0.0	1.5	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_30	PF13604.6	gi|296242893|ref|YP_003650380.1|	-	0.0079	15.9	0.0	0.01	15.6	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
Arf	PF00025.21	gi|296242893|ref|YP_003650380.1|	-	0.017	14.6	0.0	0.028	13.9	0.0	1.3	1	0	0	1	1	1	0	ADP-ribosylation	factor	family
DUF2075	PF09848.9	gi|296242893|ref|YP_003650380.1|	-	0.026	13.8	0.0	0.051	12.8	0.0	1.4	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.18	gi|296242893|ref|YP_003650380.1|	-	0.057	13.2	0.0	0.07	12.9	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
SRPRB	PF09439.10	gi|296242893|ref|YP_003650380.1|	-	0.11	11.9	0.0	0.16	11.4	0.0	1.4	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
CarS-like	PF01864.17	gi|296242894|ref|YP_003650381.1|	-	3.4e-27	95.5	3.4	1.1e-26	93.8	3.4	1.7	1	1	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|296242894|ref|YP_003650381.1|	-	1.1e-07	31.9	3.3	1.1e-07	31.9	3.3	1.9	1	1	1	2	2	2	1	Cytidylyltransferase	family
Ribosomal_L44	PF00935.19	gi|296242895|ref|YP_003650382.1|	-	3.2e-27	94.8	11.3	4.6e-27	94.3	11.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L44
zinc_ribbon_4	PF13717.6	gi|296242895|ref|YP_003650382.1|	-	0.0021	17.9	5.2	0.0084	16.0	0.5	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|296242895|ref|YP_003650382.1|	-	0.033	14.3	0.8	5.2	7.3	0.0	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
CpXC	PF14353.6	gi|296242895|ref|YP_003650382.1|	-	0.05	13.7	3.3	0.47	10.5	0.2	2.1	1	1	1	2	2	2	0	CpXC	protein
RNA_POL_M_15KD	PF02150.16	gi|296242895|ref|YP_003650382.1|	-	0.059	13.3	0.6	0.77	9.7	0.0	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
DUF35_N	PF12172.8	gi|296242895|ref|YP_003650382.1|	-	0.077	12.9	1.6	3.6	7.6	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_2	PF13240.6	gi|296242895|ref|YP_003650382.1|	-	0.096	12.4	6.9	0.91	9.3	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Cys_rich_KTR	PF14205.6	gi|296242895|ref|YP_003650382.1|	-	0.1	12.4	2.3	0.86	9.4	0.1	2.3	2	0	0	2	2	2	0	Cysteine-rich	KTR
WCCH	PF03716.14	gi|296242895|ref|YP_003650382.1|	-	0.12	12.1	0.7	0.12	12.1	0.7	1.8	2	0	0	2	2	2	0	WCCH	motif
CxC5	PF18718.1	gi|296242895|ref|YP_003650382.1|	-	0.16	12.1	6.6	1.5	8.9	1.4	2.1	1	1	1	2	2	2	0	CxC5	like	cysteine	cluster	associated	with	KDZ	transposases
zf-Mss51	PF13824.6	gi|296242895|ref|YP_003650382.1|	-	0.19	11.8	3.8	3.1	8.0	4.2	2.0	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Ribosomal_L33	PF00471.20	gi|296242895|ref|YP_003650382.1|	-	0.32	11.5	0.7	0.32	11.5	0.7	3.1	2	1	1	3	3	3	0	Ribosomal	protein	L33
zinc_ribbon_5	PF13719.6	gi|296242895|ref|YP_003650382.1|	-	0.33	10.7	6.4	1.9	8.3	0.7	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|296242895|ref|YP_003650382.1|	-	0.37	10.3	3.0	8.3	6.0	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Ribosomal_S8e	PF01201.22	gi|296242895|ref|YP_003650382.1|	-	0.5	10.5	4.3	0.63	10.2	4.3	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S8e
zf-AN1	PF01428.16	gi|296242895|ref|YP_003650382.1|	-	0.64	10.2	6.9	5.8	7.2	0.4	2.2	2	0	0	2	2	2	0	AN1-like	Zinc	finger
Ribosomal_S27e	PF01667.17	gi|296242896|ref|YP_003650383.1|	-	5.3e-16	58.1	1.5	6e-16	57.9	1.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S27
HypA	PF01155.19	gi|296242896|ref|YP_003650383.1|	-	0.0014	18.7	0.1	0.0016	18.5	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|296242896|ref|YP_003650383.1|	-	0.0016	18.5	0.7	0.0023	18.0	0.7	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|296242896|ref|YP_003650383.1|	-	0.0026	17.2	1.0	0.0038	16.7	1.0	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|296242896|ref|YP_003650383.1|	-	0.0051	16.8	0.5	0.0072	16.3	0.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.10	gi|296242896|ref|YP_003650383.1|	-	0.019	14.7	1.1	3.4	7.5	0.1	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-C2H2_3	PF13878.6	gi|296242896|ref|YP_003650383.1|	-	0.02	14.7	0.5	5.1	7.0	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
zinc_ribbon_10	PF10058.9	gi|296242896|ref|YP_003650383.1|	-	0.032	13.9	1.3	0.052	13.3	1.3	1.4	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-IS66	PF13005.7	gi|296242896|ref|YP_003650383.1|	-	0.044	14.2	0.9	1.3	9.5	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_RNApol_7kD	PF03604.13	gi|296242896|ref|YP_003650383.1|	-	0.075	12.7	4.6	0.44	10.3	4.6	2.0	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_2	PF13240.6	gi|296242896|ref|YP_003650383.1|	-	0.087	12.6	3.7	1.6	8.5	3.9	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_6	PF14599.6	gi|296242896|ref|YP_003650383.1|	-	0.093	12.8	0.2	0.12	12.4	0.2	1.1	1	0	0	1	1	1	0	Zinc-ribbon
ADK_lid	PF05191.14	gi|296242896|ref|YP_003650383.1|	-	0.27	11.3	2.5	1	9.4	2.5	1.8	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
zf-trcl	PF13451.6	gi|296242896|ref|YP_003650383.1|	-	0.74	9.8	5.1	3.2	7.7	0.3	2.2	1	1	1	2	2	2	0	Probable	zinc-ribbon	domain
Spc24	PF08286.11	gi|296242897|ref|YP_003650384.1|	-	0.00052	20.2	0.6	0.016	15.5	0.6	2.2	2	0	0	2	2	2	1	Spc24	subunit	of	Ndc80
DivIC	PF04977.15	gi|296242897|ref|YP_003650384.1|	-	0.0041	16.8	0.5	0.01	15.6	0.5	1.6	1	0	0	1	1	1	1	Septum	formation	initiator
NUDE_C	PF04880.13	gi|296242897|ref|YP_003650384.1|	-	0.013	16.0	1.6	0.018	15.5	1.6	1.2	1	0	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
PKcGMP_CC	PF16808.5	gi|296242897|ref|YP_003650384.1|	-	0.019	14.8	1.1	0.032	14.1	0.5	1.7	1	1	0	1	1	1	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Csm1_N	PF18504.1	gi|296242897|ref|YP_003650384.1|	-	0.026	14.9	1.0	0.062	13.6	1.0	1.6	1	0	0	1	1	1	0	Csm1	N-terminal	domain
Syntaphilin	PF15290.6	gi|296242897|ref|YP_003650384.1|	-	0.029	14.0	0.5	0.047	13.3	0.5	1.3	1	0	0	1	1	1	0	Golgi-localised	syntaxin-1-binding	clamp
TolA_bind_tri	PF16331.5	gi|296242897|ref|YP_003650384.1|	-	0.031	14.4	1.3	0.036	14.1	0.4	1.5	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
Med9	PF07544.13	gi|296242897|ref|YP_003650384.1|	-	0.058	13.5	0.5	0.2	11.7	0.7	1.8	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Helo_like_N	PF17111.5	gi|296242897|ref|YP_003650384.1|	-	0.061	12.7	0.5	0.14	11.5	0.1	1.7	2	0	0	2	2	2	0	Fungal	N-terminal	domain	of	STAND	proteins
HalX	PF08663.10	gi|296242897|ref|YP_003650384.1|	-	0.069	13.5	2.0	0.12	12.7	2.0	1.4	1	0	0	1	1	1	0	HalX	domain
I_LWEQ	PF01608.17	gi|296242897|ref|YP_003650384.1|	-	0.071	13.4	0.4	0.11	12.7	0.4	1.2	1	0	0	1	1	1	0	I/LWEQ	domain
SlyX	PF04102.12	gi|296242897|ref|YP_003650384.1|	-	0.098	13.3	1.5	0.2	12.3	1.2	1.6	2	0	0	2	2	1	0	SlyX
Ribosomal_L29	PF00831.23	gi|296242897|ref|YP_003650384.1|	-	0.099	12.6	5.6	0.99	9.4	3.1	2.4	2	0	0	2	2	2	0	Ribosomal	L29	protein
FlaC_arch	PF05377.11	gi|296242897|ref|YP_003650384.1|	-	0.17	12.3	2.2	0.76	10.2	1.8	2.1	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF948	PF06103.11	gi|296242897|ref|YP_003650384.1|	-	0.31	11.3	1.9	12	6.3	0.2	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
bZIP_2	PF07716.15	gi|296242897|ref|YP_003650384.1|	-	0.33	11.1	5.1	0.57	10.3	5.1	1.4	1	0	0	1	1	1	0	Basic	region	leucine	zipper
CTP_synth_N	PF06418.14	gi|296242898|ref|YP_003650385.1|	-	1.1e-117	392.0	0.1	1.5e-117	391.6	0.1	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|296242898|ref|YP_003650385.1|	-	3.3e-43	147.7	0.0	6.9e-43	146.6	0.0	1.5	2	0	0	2	2	2	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|296242898|ref|YP_003650385.1|	-	1.4e-09	38.0	0.0	5.1e-09	36.2	0.0	1.8	1	1	0	1	1	1	1	Peptidase	C26
CbiA	PF01656.23	gi|296242898|ref|YP_003650385.1|	-	0.0029	17.7	0.0	0.0051	16.9	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GATase_3	PF07685.14	gi|296242898|ref|YP_003650385.1|	-	0.13	11.8	0.0	0.27	10.8	0.0	1.5	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|296242899|ref|YP_003650386.1|	-	9.8e-19	67.4	0.0	1.3e-18	67.1	0.0	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|296242899|ref|YP_003650386.1|	-	0.00047	19.7	0.0	0.0006	19.3	0.0	1.1	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Aldo_ket_red	PF00248.21	gi|296242901|ref|YP_003650388.1|	-	2.8e-62	210.6	0.0	3.2e-62	210.4	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
tRNA_SAD	PF07973.14	gi|296242902|ref|YP_003650389.1|	-	4.2e-12	46.0	0.1	7e-12	45.3	0.1	1.4	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2c	PF01411.19	gi|296242902|ref|YP_003650389.1|	-	8.1e-07	27.9	0.0	1.3e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
TFIIB	PF00382.19	gi|296242903|ref|YP_003650390.1|	-	5.5e-38	128.9	0.3	9.4e-18	64.0	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|296242903|ref|YP_003650390.1|	-	3.3e-10	39.3	0.2	5.6e-10	38.6	0.2	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|296242903|ref|YP_003650390.1|	-	4.3e-07	30.0	0.0	0.015	15.4	0.0	2.3	2	0	0	2	2	2	2	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|296242903|ref|YP_003650390.1|	-	0.00048	19.6	0.5	0.003	17.0	0.1	2.6	4	0	0	4	4	4	1	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.6	gi|296242903|ref|YP_003650390.1|	-	0.0048	16.3	0.5	0.2	11.1	0.0	3.3	3	1	1	4	4	4	1	Helix-turn-helix	domain	of	transposase	family	ISL3
TFIIB_C_1	PF18542.1	gi|296242903|ref|YP_003650390.1|	-	0.022	14.8	1.4	0.055	13.5	0.6	2.0	2	0	0	2	2	2	0	Transcription	factor	IIB	C-terminal	module	1
HTH_AsnC-type	PF13404.6	gi|296242903|ref|YP_003650390.1|	-	0.032	14.1	0.2	0.22	11.4	0.1	2.6	2	1	1	3	3	3	0	AsnC-type	helix-turn-helix	domain
RHH_3	PF12651.7	gi|296242903|ref|YP_003650390.1|	-	0.063	13.3	2.2	1.6	8.7	0.1	2.9	3	0	0	3	3	3	0	Ribbon-helix-helix	domain
RB_B	PF01857.20	gi|296242903|ref|YP_003650390.1|	-	0.084	12.9	0.0	0.14	12.2	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Sigma70_r4_2	PF08281.12	gi|296242903|ref|YP_003650390.1|	-	0.092	12.4	0.1	1.2	8.9	0.1	2.7	1	1	1	2	2	2	0	Sigma-70,	region	4
A2L_zn_ribbon	PF08792.10	gi|296242903|ref|YP_003650390.1|	-	0.13	12.0	0.1	0.24	11.2	0.1	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
SUI1	PF01253.22	gi|296242904|ref|YP_003650391.1|	-	9.8e-20	70.9	1.7	1.2e-19	70.6	1.7	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|296242904|ref|YP_003650391.1|	-	0.034	14.5	0.5	0.047	14.0	0.4	1.3	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
Zn-ribbon_8	PF09723.10	gi|296242905|ref|YP_003650392.1|	-	7.8e-05	22.7	1.7	0.0001	22.3	1.7	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.6	gi|296242905|ref|YP_003650392.1|	-	0.0005	19.8	5.5	0.033	13.9	0.3	2.2	1	1	1	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|296242905|ref|YP_003650392.1|	-	0.00062	19.6	4.6	0.056	13.4	0.5	2.2	1	1	1	2	2	2	2	zinc-ribbon	domain
Rubredoxin	PF00301.20	gi|296242905|ref|YP_003650392.1|	-	0.0014	18.6	3.2	0.01	15.9	0.3	2.1	2	0	0	2	2	2	1	Rubredoxin
Zn_Tnp_IS1595	PF12760.7	gi|296242905|ref|YP_003650392.1|	-	0.0027	17.6	1.9	0.076	13.0	0.0	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|296242905|ref|YP_003650392.1|	-	0.0036	16.8	0.8	0.39	10.3	0.1	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf-HIT	PF04438.16	gi|296242905|ref|YP_003650392.1|	-	0.0092	15.8	3.7	1.1	9.2	0.2	2.2	2	0	0	2	2	2	2	HIT	zinc	finger
zf_UBZ	PF18439.1	gi|296242905|ref|YP_003650392.1|	-	0.015	14.9	1.4	1.2	8.8	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
HypA	PF01155.19	gi|296242905|ref|YP_003650392.1|	-	0.018	15.1	0.2	0.018	15.0	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DNA_RNApol_7kD	PF03604.13	gi|296242905|ref|YP_003650392.1|	-	0.019	14.6	9.3	0.22	11.2	9.3	2.0	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-C2H2	PF00096.26	gi|296242905|ref|YP_003650392.1|	-	0.024	15.1	1.5	0.4	11.2	0.2	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Zn_ribbon_SprT	PF17283.2	gi|296242905|ref|YP_003650392.1|	-	0.031	14.2	3.0	0.74	9.8	0.4	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zinc_ribbon_12	PF11331.8	gi|296242905|ref|YP_003650392.1|	-	0.065	13.0	2.0	3.3	7.6	0.2	2.1	1	1	1	2	2	2	0	Probable	zinc-ribbon	domain
UPF0547	PF10571.9	gi|296242905|ref|YP_003650392.1|	-	0.084	13.0	5.8	0.77	9.9	0.7	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
TFIIS_C	PF01096.18	gi|296242905|ref|YP_003650392.1|	-	0.13	12.2	2.4	8.3	6.4	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-C2H2_4	PF13894.6	gi|296242905|ref|YP_003650392.1|	-	0.18	12.7	1.5	9.3	7.4	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_13	PF09855.9	gi|296242905|ref|YP_003650392.1|	-	1.4	9.1	4.7	2.3	8.4	0.3	2.1	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Mu-like_Com	PF10122.9	gi|296242905|ref|YP_003650392.1|	-	2.7	7.5	7.8	13	5.3	7.8	1.9	1	1	0	1	1	1	0	Mu-like	prophage	protein	Com
Rubredoxin_2	PF18073.1	gi|296242905|ref|YP_003650392.1|	-	6.9	6.5	9.3	0.7	9.7	0.8	2.2	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
Arginase	PF00491.21	gi|296242906|ref|YP_003650393.1|	-	1e-64	218.8	0.0	1.2e-64	218.6	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
HGTP_anticodon	PF03129.20	gi|296242907|ref|YP_003650394.1|	-	7.2e-22	77.4	0.3	2e-21	75.9	0.0	1.9	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|296242907|ref|YP_003650394.1|	-	2.9e-12	46.9	0.0	1.2e-10	41.7	0.0	2.9	2	1	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
ADK_lid	PF05191.14	gi|296242907|ref|YP_003650394.1|	-	0.2	11.6	0.2	0.56	10.2	0.2	1.7	1	0	0	1	1	1	0	Adenylate	kinase,	active	site	lid
MazE_antitoxin	PF04014.18	gi|296242908|ref|YP_003650395.1|	-	0.014	15.4	0.1	0.035	14.0	0.1	1.7	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Molydop_binding	PF01568.21	gi|296242908|ref|YP_003650395.1|	-	0.031	14.3	0.0	0.042	13.9	0.0	1.3	1	0	0	1	1	1	0	Molydopterin	dinucleotide	binding	domain
Acatn	PF13000.7	gi|296242909|ref|YP_003650396.1|	-	0.079	11.4	0.0	0.092	11.2	0.0	1.1	1	0	0	1	1	1	0	Acetyl-coenzyme	A	transporter	1
Radical_SAM	PF04055.21	gi|296242910|ref|YP_003650397.1|	-	5.3e-12	46.4	0.0	2e-11	44.5	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|296242910|ref|YP_003650397.1|	-	2.6e-08	33.9	0.1	7.7e-08	32.4	0.0	1.8	2	0	0	2	2	2	1	B12	binding	domain
PhoU_div	PF01865.16	gi|296242911|ref|YP_003650398.1|	-	1.4e-08	34.3	7.6	1.7e-08	34.1	7.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.19	gi|296242911|ref|YP_003650398.1|	-	6.7e-06	26.5	10.2	0.00098	19.5	1.4	2.5	2	1	1	3	3	3	2	PhoU	domain
SPAM	PF02090.15	gi|296242911|ref|YP_003650398.1|	-	0.00066	19.5	0.7	0.001	18.9	0.6	1.4	1	1	0	1	1	1	1	Salmonella	surface	presentation	of	antigen	gene	type	M	protein
Dor1	PF04124.12	gi|296242911|ref|YP_003650398.1|	-	0.0092	14.7	2.6	0.028	13.1	2.6	1.8	1	1	0	1	1	1	1	Dor1-like	family
Flavoprotein	PF02441.19	gi|296242913|ref|YP_003650400.1|	-	3.9e-22	78.7	0.0	5.9e-22	78.1	0.0	1.2	1	0	0	1	1	1	1	Flavoprotein
Thump_like	PF18096.1	gi|296242913|ref|YP_003650400.1|	-	0.065	13.2	0.0	0.44	10.5	0.0	2.0	2	0	0	2	2	2	0	THUMP	domain-like
GATase_6	PF13522.6	gi|296242915|ref|YP_003650402.1|	-	4.9e-06	26.8	0.0	7.8e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.6	gi|296242915|ref|YP_003650402.1|	-	0.00024	20.1	0.0	0.00043	19.3	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferases	class-II
NAD_kinase	PF01513.21	gi|296242916|ref|YP_003650403.1|	-	1.8e-54	184.9	0.0	2.2e-54	184.7	0.0	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|296242916|ref|YP_003650403.1|	-	3.9e-07	29.7	0.7	2.5e-06	27.1	0.3	2.5	3	1	0	3	3	3	1	Diacylglycerol	kinase	catalytic	domain
DeoRC	PF00455.22	gi|296242916|ref|YP_003650403.1|	-	0.0033	17.4	0.0	0.0062	16.5	0.0	1.5	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
PFK	PF00365.20	gi|296242916|ref|YP_003650403.1|	-	0.0062	15.9	0.0	0.012	14.9	0.0	1.4	1	0	0	1	1	1	1	Phosphofructokinase
Shikimate_DH	PF01488.20	gi|296242916|ref|YP_003650403.1|	-	0.072	13.2	0.0	8.8	6.4	0.0	2.7	3	0	0	3	3	3	0	Shikimate	/	quinate	5-dehydrogenase
eIF-5a	PF01287.20	gi|296242917|ref|YP_003650404.1|	-	9.4e-07	28.8	0.7	1.7e-06	28.1	0.7	1.4	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.12	gi|296242917|ref|YP_003650404.1|	-	2.9e-06	27.2	0.2	8.3e-06	25.7	0.1	1.9	2	0	0	2	2	2	1	Elongation	factor	P	(EF-P)	KOW-like	domain
EFP	PF01132.20	gi|296242917|ref|YP_003650404.1|	-	6.2e-05	22.9	0.7	0.00012	22.0	0.7	1.4	1	0	0	1	1	1	1	Elongation	factor	P	(EF-P)	OB	domain
Topoisom_bac	PF01131.20	gi|296242920|ref|YP_003650407.1|	-	1.3e-82	278.0	0.8	2e-82	277.4	0.8	1.3	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|296242920|ref|YP_003650407.1|	-	1.1e-22	80.2	0.0	6e-22	77.8	0.0	2.4	1	0	0	1	1	1	1	Toprim	domain
DEAD	PF00270.29	gi|296242920|ref|YP_003650407.1|	-	2.7e-12	46.8	0.0	7e-12	45.5	0.0	1.7	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|296242920|ref|YP_003650407.1|	-	3.8e-11	43.3	0.1	0.00065	20.0	0.0	4.0	3	0	0	3	3	3	2	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|296242920|ref|YP_003650407.1|	-	2.8e-08	33.9	0.0	8e-08	32.5	0.0	1.7	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
zf_Rg	PF17915.1	gi|296242920|ref|YP_003650407.1|	-	3.1e-08	32.9	0.3	3.1e-08	32.9	0.3	1.9	2	0	0	2	2	1	1	Reverse	gyrase	zinc	finger
Helicase_C_2	PF13307.6	gi|296242920|ref|YP_003650407.1|	-	0.0015	18.7	0.0	0.028	14.6	0.0	2.8	3	0	0	3	3	3	1	Helicase	C-terminal	domain
AAA_22	PF13401.6	gi|296242920|ref|YP_003650407.1|	-	0.0038	17.5	0.2	0.027	14.7	0.2	2.5	1	1	0	1	1	1	1	AAA	domain
PhoH	PF02562.16	gi|296242920|ref|YP_003650407.1|	-	0.036	13.5	0.0	0.098	12.1	0.0	1.7	1	0	0	1	1	1	0	PhoH-like	protein
Img2	PF05046.14	gi|296242920|ref|YP_003650407.1|	-	0.11	12.8	0.4	0.69	10.3	0.0	2.6	2	0	0	2	2	2	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
zf-ribbon_3	PF13248.6	gi|296242920|ref|YP_003650407.1|	-	0.3	10.6	3.0	12	5.4	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|296242920|ref|YP_003650407.1|	-	0.39	10.3	1.8	42	3.8	0.1	3.2	3	0	0	3	3	3	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|296242920|ref|YP_003650407.1|	-	0.41	10.4	7.4	3.6	7.4	2.7	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-dskA_traR	PF01258.17	gi|296242920|ref|YP_003650407.1|	-	3.6	7.6	4.9	0.48	10.4	0.5	1.9	2	0	0	2	2	1	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
YhfH	PF14149.6	gi|296242920|ref|YP_003650407.1|	-	4.7	7.3	6.4	0.8	9.7	1.0	2.4	2	0	0	2	2	2	0	YhfH-like	protein
Zn-ribbon_8	PF09723.10	gi|296242920|ref|YP_003650407.1|	-	5.5	7.2	8.9	5.8	7.1	0.7	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-LITAF-like	PF10601.9	gi|296242920|ref|YP_003650407.1|	-	6.2	7.2	5.6	50	4.3	0.1	3.2	3	0	0	3	3	3	0	LITAF-like	zinc	ribbon	domain
ATPase	PF06745.13	gi|296242921|ref|YP_003650408.1|	-	3.2e-88	295.0	0.0	3.6e-88	294.8	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|296242921|ref|YP_003650408.1|	-	8.6e-07	28.7	0.0	1.3e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|296242921|ref|YP_003650408.1|	-	0.0002	20.7	0.2	0.015	14.6	0.1	2.2	2	0	0	2	2	2	1	Rad51
GvpD	PF07088.11	gi|296242921|ref|YP_003650408.1|	-	0.00029	19.6	0.0	0.00056	18.7	0.0	1.5	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
PPV_E1_C	PF00519.17	gi|296242921|ref|YP_003650408.1|	-	0.0043	16.0	0.1	0.0096	14.8	0.0	1.5	2	0	0	2	2	2	1	Papillomavirus	helicase
NTPase_1	PF03266.15	gi|296242921|ref|YP_003650408.1|	-	0.0047	16.9	0.2	0.0079	16.1	0.2	1.4	1	0	0	1	1	1	1	NTPase
DUF2075	PF09848.9	gi|296242921|ref|YP_003650408.1|	-	0.016	14.5	1.0	0.25	10.5	0.5	2.0	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
DnaB_C	PF03796.15	gi|296242921|ref|YP_003650408.1|	-	0.019	14.3	0.0	0.027	13.8	0.0	1.2	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
T2SSE	PF00437.20	gi|296242921|ref|YP_003650408.1|	-	0.052	12.6	0.0	0.084	11.9	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MEDS	PF14417.6	gi|296242921|ref|YP_003650408.1|	-	0.081	12.8	0.0	0.18	11.6	0.0	1.5	1	1	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
RecA	PF00154.21	gi|296242921|ref|YP_003650408.1|	-	0.091	12.2	0.6	4	6.8	0.2	2.3	1	1	1	2	2	2	0	recA	bacterial	DNA	recombination	protein
AAA_16	PF13191.6	gi|296242921|ref|YP_003650408.1|	-	0.097	13.1	0.0	0.15	12.5	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_19	PF13245.6	gi|296242921|ref|YP_003650408.1|	-	0.21	11.9	1.1	0.52	10.6	0.1	2.0	2	1	1	3	3	3	0	AAA	domain
AAA	PF00004.29	gi|296242922|ref|YP_003650409.1|	-	4.4e-100	331.3	0.0	2.7e-50	170.2	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|296242922|ref|YP_003650409.1|	-	2.1e-36	123.4	0.9	1.7e-18	66.1	0.2	3.5	3	0	0	3	3	3	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|296242922|ref|YP_003650409.1|	-	1.1e-26	92.7	0.1	7.9e-26	90.1	0.3	2.3	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.12	gi|296242922|ref|YP_003650409.1|	-	1.4e-16	60.6	0.0	2.2e-08	34.0	0.0	2.9	3	1	0	3	3	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|296242922|ref|YP_003650409.1|	-	4e-14	53.1	0.0	1.1e-07	32.1	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|296242922|ref|YP_003650409.1|	-	6.9e-14	52.6	0.0	6.3e-07	29.9	0.0	3.0	3	0	0	3	3	2	2	AAA	ATPase	domain
CDC48_2	PF02933.17	gi|296242922|ref|YP_003650409.1|	-	1.1e-12	47.6	0.4	3.4e-12	45.9	0.1	2.0	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_5	PF07728.14	gi|296242922|ref|YP_003650409.1|	-	2.1e-12	47.2	0.6	2.8e-05	24.1	0.1	3.8	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.13	gi|296242922|ref|YP_003650409.1|	-	5.1e-12	45.7	0.2	6.7e-05	22.2	0.0	2.7	2	1	1	3	3	3	2	TIP49	P-loop	domain
AAA_22	PF13401.6	gi|296242922|ref|YP_003650409.1|	-	1.1e-11	45.2	0.9	0.00089	19.5	0.1	4.2	2	2	0	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|296242922|ref|YP_003650409.1|	-	2e-11	44.2	0.0	0.00016	21.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Vps4_C	PF09336.10	gi|296242922|ref|YP_003650409.1|	-	3.1e-11	43.1	0.1	0.0001	22.2	0.0	3.4	4	0	0	4	4	2	2	Vps4	C	terminal	oligomerisation	domain
AAA_14	PF13173.6	gi|296242922|ref|YP_003650409.1|	-	9.4e-10	38.6	0.0	0.0001	22.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|296242922|ref|YP_003650409.1|	-	1.5e-08	35.2	0.0	0.0025	18.3	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|296242922|ref|YP_003650409.1|	-	1.5e-08	34.6	0.0	0.0071	16.1	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|296242922|ref|YP_003650409.1|	-	3e-08	34.1	0.0	0.0042	17.3	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.6	gi|296242922|ref|YP_003650409.1|	-	1.5e-07	31.2	4.3	0.5	9.9	0.0	4.6	3	1	0	4	4	4	2	AAA	domain
RNA_helicase	PF00910.22	gi|296242922|ref|YP_003650409.1|	-	2.4e-07	31.1	0.0	0.0054	17.1	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.21	gi|296242922|ref|YP_003650409.1|	-	3.9e-07	29.6	1.0	0.018	14.5	0.1	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|296242922|ref|YP_003650409.1|	-	7.1e-07	29.1	0.0	0.0088	15.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
TsaE	PF02367.17	gi|296242922|ref|YP_003650409.1|	-	5.6e-06	26.4	0.1	0.085	12.9	0.0	2.6	2	1	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_3	PF07726.11	gi|296242922|ref|YP_003650409.1|	-	8.7e-06	25.6	0.0	0.15	12.0	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase	PF06745.13	gi|296242922|ref|YP_003650409.1|	-	1.4e-05	24.6	3.7	0.33	10.3	0.0	4.1	3	2	0	5	5	4	2	KaiC
Zeta_toxin	PF06414.12	gi|296242922|ref|YP_003650409.1|	-	1.8e-05	24.1	0.0	0.21	10.9	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
ABC_tran	PF00005.27	gi|296242922|ref|YP_003650409.1|	-	2.4e-05	24.9	0.0	0.29	11.7	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
Sigma54_activat	PF00158.26	gi|296242922|ref|YP_003650409.1|	-	3.2e-05	23.7	0.0	0.42	10.3	0.0	3.2	2	1	0	2	2	2	2	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|296242922|ref|YP_003650409.1|	-	3.8e-05	23.3	0.0	0.21	11.1	0.0	2.5	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
Parvo_NS1	PF01057.17	gi|296242922|ref|YP_003650409.1|	-	3.9e-05	22.9	0.1	0.048	12.7	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
DUF815	PF05673.13	gi|296242922|ref|YP_003650409.1|	-	7.5e-05	22.0	0.0	0.32	10.1	0.0	2.6	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
PhoH	PF02562.16	gi|296242922|ref|YP_003650409.1|	-	0.00011	21.8	1.0	0.26	10.7	0.1	2.6	2	0	0	2	2	2	2	PhoH-like	protein
Bac_DnaA	PF00308.18	gi|296242922|ref|YP_003650409.1|	-	0.00012	22.0	0.0	0.015	15.1	0.0	2.8	2	2	0	2	2	2	1	Bacterial	dnaA	protein
ATPase_2	PF01637.18	gi|296242922|ref|YP_003650409.1|	-	0.00014	21.9	0.0	0.042	13.8	0.0	2.7	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
DUF2075	PF09848.9	gi|296242922|ref|YP_003650409.1|	-	0.00016	21.0	0.0	0.067	12.4	0.0	2.2	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|296242922|ref|YP_003650409.1|	-	0.00058	19.8	1.3	0.69	9.8	0.1	3.1	3	0	0	3	3	3	1	NACHT	domain
AAA_17	PF13207.6	gi|296242922|ref|YP_003650409.1|	-	0.0014	19.1	0.0	2	8.8	0.0	3.0	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|296242922|ref|YP_003650409.1|	-	0.0015	18.5	0.0	1.4	8.8	0.0	2.8	2	1	1	3	3	3	1	Rad17	P-loop	domain
AAA_30	PF13604.6	gi|296242922|ref|YP_003650409.1|	-	0.0021	17.8	0.3	2.3	7.9	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|296242922|ref|YP_003650409.1|	-	0.0024	17.7	0.0	1.5	8.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_6	PF12774.7	gi|296242922|ref|YP_003650409.1|	-	0.003	16.6	0.1	0.17	10.8	0.0	2.9	3	0	0	3	3	3	1	Hydrolytic	ATP	binding	site	of	dynein	motor	region
Sigma54_activ_2	PF14532.6	gi|296242922|ref|YP_003650409.1|	-	0.0069	16.5	0.0	3.1	7.9	0.0	2.6	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Cytidylate_kin	PF02224.18	gi|296242922|ref|YP_003650409.1|	-	0.007	16.1	0.1	2.8	7.6	0.0	2.6	3	0	0	3	3	2	1	Cytidylate	kinase
IPT	PF01745.16	gi|296242922|ref|YP_003650409.1|	-	0.0096	15.3	0.4	4.1	6.7	0.1	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
T2SSE	PF00437.20	gi|296242922|ref|YP_003650409.1|	-	0.0097	15.0	0.0	1.4	8.0	0.0	2.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
SKI	PF01202.22	gi|296242922|ref|YP_003650409.1|	-	0.012	15.7	0.0	3.8	7.6	0.0	2.6	2	0	0	2	2	2	0	Shikimate	kinase
PduV-EutP	PF10662.9	gi|296242922|ref|YP_003650409.1|	-	0.018	14.8	0.0	4.6	7.0	0.0	2.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
NB-ARC	PF00931.22	gi|296242922|ref|YP_003650409.1|	-	0.019	14.1	0.0	5.4	6.1	0.0	2.5	2	0	0	2	2	2	0	NB-ARC	domain
AFG1_ATPase	PF03969.16	gi|296242922|ref|YP_003650409.1|	-	0.04	12.8	0.0	9	5.1	0.0	2.7	3	0	0	3	3	3	0	AFG1-like	ATPase
eIF-1a	PF01176.19	gi|296242922|ref|YP_003650409.1|	-	0.041	13.7	0.1	0.12	12.3	0.1	1.7	1	0	0	1	1	1	0	Translation	initiation	factor	1A	/	IF-1
AAA_19	PF13245.6	gi|296242922|ref|YP_003650409.1|	-	0.042	14.2	5.0	6.3	7.1	0.2	3.3	3	1	0	4	4	3	0	AAA	domain
ResIII	PF04851.15	gi|296242922|ref|YP_003650409.1|	-	0.052	13.5	0.0	20	5.1	0.0	2.8	2	1	1	3	3	3	0	Type	III	restriction	enzyme,	res	subunit
TniB	PF05621.11	gi|296242922|ref|YP_003650409.1|	-	0.054	12.9	0.0	15	4.9	0.0	3.3	4	0	0	4	4	4	0	Bacterial	TniB	protein
AAA_29	PF13555.6	gi|296242922|ref|YP_003650409.1|	-	0.055	13.2	0.0	18	5.2	0.0	2.7	3	0	0	3	3	2	0	P-loop	containing	region	of	AAA	domain
Guanylate_kin	PF00625.21	gi|296242922|ref|YP_003650409.1|	-	0.091	12.4	0.2	42	3.7	0.0	3.7	2	2	2	4	4	4	0	Guanylate	kinase
Viral_helicase1	PF01443.18	gi|296242922|ref|YP_003650409.1|	-	0.096	12.4	0.0	2.7	7.7	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
NTPase_1	PF03266.15	gi|296242922|ref|YP_003650409.1|	-	0.1	12.5	5.1	19	5.1	0.0	4.4	4	1	1	5	5	4	0	NTPase
Hydin_ADK	PF17213.3	gi|296242922|ref|YP_003650409.1|	-	0.11	12.8	0.2	6.7	6.9	0.1	2.3	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
KAP_NTPase	PF07693.14	gi|296242922|ref|YP_003650409.1|	-	0.11	11.7	0.0	4.1	6.6	0.0	2.3	2	0	0	2	2	2	0	KAP	family	P-loop	domain
KTI12	PF08433.10	gi|296242922|ref|YP_003650409.1|	-	0.13	11.7	0.1	14	5.1	0.0	2.9	3	0	0	3	3	3	0	Chromatin	associated	protein	KTI12
Cytidylate_kin2	PF13189.6	gi|296242922|ref|YP_003650409.1|	-	0.15	12.2	0.0	4.2	7.4	0.0	2.3	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Helicase_RecD	PF05127.14	gi|296242923|ref|YP_003650410.1|	-	5.5e-55	186.0	0.0	9.7e-55	185.1	0.0	1.4	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|296242923|ref|YP_003650410.1|	-	1.1e-43	149.3	0.0	5.1e-30	104.6	0.0	2.3	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|296242923|ref|YP_003650410.1|	-	1.1e-30	105.5	0.0	9.4e-30	102.4	0.0	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1726)
Acetyltransf_1	PF00583.25	gi|296242923|ref|YP_003650410.1|	-	1.2e-06	28.8	0.1	4.9e-06	26.8	0.0	2.2	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|296242923|ref|YP_003650410.1|	-	0.00032	21.1	0.0	0.0025	18.2	0.0	2.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
tRNA_bind_2	PF13725.6	gi|296242923|ref|YP_003650410.1|	-	0.0084	15.8	0.0	0.017	14.8	0.0	1.5	1	0	0	1	1	1	1	Possible	tRNA	binding	domain
Glyco_hydro_4	PF02056.16	gi|296242924|ref|YP_003650411.1|	-	1.8e-46	158.0	0.0	2.5e-46	157.5	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Glyco_hydro_4C	PF11975.8	gi|296242924|ref|YP_003650411.1|	-	8.4e-40	137.1	0.0	7.4e-39	134.0	0.0	2.0	2	0	0	2	2	2	1	Family	4	glycosyl	hydrolase	C-terminal	domain
Ldh_1_N	PF00056.23	gi|296242924|ref|YP_003650411.1|	-	0.0029	17.7	0.3	1.8	8.6	0.0	2.5	2	0	0	2	2	2	2	lactate/malate	dehydrogenase,	NAD	binding	domain
Radical_SAM	PF04055.21	gi|296242925|ref|YP_003650412.1|	-	6.8e-13	49.3	0.0	1.3e-12	48.4	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|296242925|ref|YP_003650412.1|	-	1.7e-06	28.4	0.1	3.2e-06	27.4	0.1	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|296242925|ref|YP_003650412.1|	-	0.00074	19.6	0.0	0.0018	18.4	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
ATPase	PF06745.13	gi|296242926|ref|YP_003650413.1|	-	1.8e-56	191.1	0.1	2e-56	190.9	0.1	1.0	1	0	0	1	1	1	1	KaiC
MEDS	PF14417.6	gi|296242926|ref|YP_003650413.1|	-	4.4e-08	33.1	0.0	6.4e-08	32.6	0.0	1.3	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_25	PF13481.6	gi|296242926|ref|YP_003650413.1|	-	4.4e-07	29.7	0.0	8.2e-07	28.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.11	gi|296242926|ref|YP_003650413.1|	-	5e-07	28.7	0.0	7.6e-07	28.1	0.0	1.2	1	0	0	1	1	1	1	GvpD	gas	vesicle	protein
Rad51	PF08423.11	gi|296242926|ref|YP_003650413.1|	-	2.1e-06	27.2	0.1	4.2e-06	26.2	0.1	1.6	1	1	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|296242926|ref|YP_003650413.1|	-	7.1e-05	22.4	0.0	0.0002	20.9	0.0	1.7	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
IstB_IS21	PF01695.17	gi|296242926|ref|YP_003650413.1|	-	0.0011	18.8	0.0	0.0021	17.8	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
DnaB_C	PF03796.15	gi|296242926|ref|YP_003650413.1|	-	0.0011	18.4	0.0	0.0016	17.8	0.0	1.5	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_24	PF13479.6	gi|296242926|ref|YP_003650413.1|	-	0.013	15.3	0.0	0.024	14.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|296242926|ref|YP_003650413.1|	-	0.13	12.5	0.0	0.26	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PAXNEB	PF05625.11	gi|296242926|ref|YP_003650413.1|	-	0.17	11.0	0.0	1.1	8.3	0.0	1.9	1	1	1	2	2	2	0	PAXNEB	protein
Sua5_yciO_yrdC	PF01300.18	gi|296242927|ref|YP_003650414.1|	-	2.9e-60	202.8	0.0	3.9e-60	202.4	0.0	1.2	1	0	0	1	1	1	1	Telomere	recombination
SUA5	PF03481.13	gi|296242927|ref|YP_003650414.1|	-	1.9e-30	106.2	0.0	2.9e-30	105.6	0.0	1.3	1	0	0	1	1	1	1	Putative	GTP-binding	controlling	metal-binding
Peptidase_S8	PF00082.22	gi|296242928|ref|YP_003650415.1|	-	7.8e-32	110.7	0.0	2.7e-31	109.0	0.0	1.9	1	1	0	1	1	1	1	Subtilase	family
VCBS	PF13517.6	gi|296242928|ref|YP_003650415.1|	-	0.01	16.4	2.0	0.2	12.3	2.5	3.2	1	1	1	2	2	2	0	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
UPRTase	PF14681.6	gi|296242929|ref|YP_003650416.1|	-	1.6e-38	132.2	0.1	1.8e-38	132.1	0.1	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|296242929|ref|YP_003650416.1|	-	3.9e-06	26.5	0.4	5.9e-06	25.9	0.4	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|296242929|ref|YP_003650416.1|	-	0.0065	16.0	0.1	0.01	15.4	0.1	1.5	1	1	0	1	1	1	1	Phosphoribosyl	transferase
NTP_transferase	PF00483.23	gi|296242930|ref|YP_003650417.1|	-	2.4e-26	92.9	0.0	2.6e-26	92.7	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|296242930|ref|YP_003650417.1|	-	1.1e-09	38.9	0.0	1.3e-09	38.6	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
MatE	PF01554.18	gi|296242931|ref|YP_003650418.1|	-	9.6e-50	168.4	27.0	1.5e-30	106.0	3.9	2.4	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|296242931|ref|YP_003650418.1|	-	3.3e-11	43.4	4.4	3.3e-11	43.4	4.4	4.4	2	1	2	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
Cation_efflux	PF01545.21	gi|296242932|ref|YP_003650419.1|	-	4e-18	65.9	21.8	4.8e-18	65.6	21.8	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|296242932|ref|YP_003650419.1|	-	2.4e-06	27.6	0.0	3.7e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
KleE	PF17394.2	gi|296242932|ref|YP_003650419.1|	-	2.4	8.4	5.6	4.2	7.6	5.2	1.7	1	1	0	1	1	1	0	Uncharacterized	KleE	stable	inheritance	protein
T2SSF	PF00482.23	gi|296242933|ref|YP_003650420.1|	-	2.2e-15	56.7	9.3	6.7e-08	32.5	0.2	3.5	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
T2SSE	PF00437.20	gi|296242934|ref|YP_003650421.1|	-	6.6e-44	150.0	0.0	9.8e-44	149.4	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|296242934|ref|YP_003650421.1|	-	0.00025	20.7	0.0	0.00047	19.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|296242934|ref|YP_003650421.1|	-	0.0084	16.4	0.0	0.075	13.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
3H	PF02829.14	gi|296242934|ref|YP_003650421.1|	-	0.014	15.7	0.0	0.038	14.3	0.0	1.7	1	0	0	1	1	1	0	3H	domain
AAA_15	PF13175.6	gi|296242934|ref|YP_003650421.1|	-	0.018	14.7	0.0	0.038	13.7	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
PCMT	PF01135.19	gi|296242934|ref|YP_003650421.1|	-	0.055	13.2	0.0	0.09	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
AAA_23	PF13476.6	gi|296242934|ref|YP_003650421.1|	-	0.093	13.2	0.2	0.093	13.2	0.2	2.0	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|296242934|ref|YP_003650421.1|	-	0.098	13.2	0.0	0.25	11.9	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
DEAD	PF00270.29	gi|296242934|ref|YP_003650421.1|	-	0.1	12.4	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
ATPase	PF06745.13	gi|296242935|ref|YP_003650422.1|	-	7e-21	74.6	0.3	8.3e-21	74.4	0.3	1.0	1	0	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|296242935|ref|YP_003650422.1|	-	2.8e-06	26.7	0.2	0.011	14.9	0.1	2.1	2	0	0	2	2	2	2	PAXNEB	protein
Rad51	PF08423.11	gi|296242935|ref|YP_003650422.1|	-	0.00019	20.8	0.7	0.0011	18.3	0.3	2.4	1	1	1	2	2	2	1	Rad51
NACHT	PF05729.12	gi|296242935|ref|YP_003650422.1|	-	0.00029	20.8	0.2	0.00087	19.2	0.2	1.7	1	1	0	1	1	1	1	NACHT	domain
DnaB_C	PF03796.15	gi|296242935|ref|YP_003650422.1|	-	0.00067	19.1	0.0	0.0022	17.4	0.0	1.8	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_16	PF13191.6	gi|296242935|ref|YP_003650422.1|	-	0.0022	18.4	0.0	0.0033	17.8	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|296242935|ref|YP_003650422.1|	-	0.0057	16.3	0.0	0.0092	15.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|296242935|ref|YP_003650422.1|	-	0.0066	16.2	0.7	0.31	10.7	0.1	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
NTPase_1	PF03266.15	gi|296242935|ref|YP_003650422.1|	-	0.0099	15.8	0.4	0.014	15.3	0.4	1.3	1	1	0	1	1	1	1	NTPase
DUF2075	PF09848.9	gi|296242935|ref|YP_003650422.1|	-	0.021	14.1	0.5	0.03	13.6	0.5	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_22	PF13401.6	gi|296242935|ref|YP_003650422.1|	-	0.022	15.0	0.0	0.031	14.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Ras	PF00071.22	gi|296242935|ref|YP_003650422.1|	-	0.03	13.9	0.4	0.049	13.2	0.4	1.3	1	0	0	1	1	1	0	Ras	family
AAA_14	PF13173.6	gi|296242935|ref|YP_003650422.1|	-	0.036	14.1	0.4	0.33	11.0	0.4	2.4	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|296242935|ref|YP_003650422.1|	-	0.044	14.3	0.0	0.084	13.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DAP3	PF10236.9	gi|296242935|ref|YP_003650422.1|	-	0.044	12.9	0.3	0.067	12.3	0.3	1.2	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
AAA_30	PF13604.6	gi|296242935|ref|YP_003650422.1|	-	0.092	12.4	0.1	0.15	11.8	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|296242935|ref|YP_003650422.1|	-	0.1	12.8	0.1	0.16	12.2	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
Helicase_RecD	PF05127.14	gi|296242935|ref|YP_003650422.1|	-	0.16	11.8	0.0	0.26	11.1	0.0	1.3	1	0	0	1	1	1	0	Helicase
Elong_Iki1	PF10483.9	gi|296242935|ref|YP_003650422.1|	-	0.17	11.3	0.0	0.24	10.8	0.0	1.3	1	0	0	1	1	1	0	Elongator	subunit	Iki1
Arch_flagellin	PF01917.16	gi|296242937|ref|YP_003650424.1|	-	1.9e-10	41.1	7.3	2.2e-10	41.0	7.3	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
YusW	PF14039.6	gi|296242938|ref|YP_003650425.1|	-	0.04	14.4	0.3	0.5	10.9	0.3	2.3	2	0	0	2	2	2	0	YusW-like	protein
Arch_flagellin	PF01917.16	gi|296242940|ref|YP_003650427.1|	-	7.6e-34	117.3	2.1	9.4e-34	117.0	2.1	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
DUF2393	PF09624.10	gi|296242940|ref|YP_003650427.1|	-	0.11	12.5	0.2	0.15	12.0	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2393)
PAPS_reduct	PF01507.19	gi|296242941|ref|YP_003650428.1|	-	4.9e-36	124.4	0.0	7e-36	123.9	0.0	1.2	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.17	gi|296242941|ref|YP_003650428.1|	-	0.0001	21.5	0.1	0.00014	21.1	0.1	1.1	1	0	0	1	1	1	1	NAD	synthase
Asn_synthase	PF00733.21	gi|296242941|ref|YP_003650428.1|	-	0.0041	16.8	0.2	0.0066	16.1	0.2	1.2	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.13	gi|296242941|ref|YP_003650428.1|	-	0.089	12.3	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.20	gi|296242941|ref|YP_003650428.1|	-	0.24	11.2	0.0	0.37	10.5	0.0	1.3	1	0	0	1	1	1	0	PP-loop	family
GDP_Man_Dehyd	PF16363.5	gi|296242942|ref|YP_003650429.1|	-	6.3e-57	193.5	0.0	8.8e-57	193.0	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|296242942|ref|YP_003650429.1|	-	1.1e-53	182.3	0.0	1.4e-53	181.8	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|296242942|ref|YP_003650429.1|	-	4.6e-21	75.1	0.0	5.8e-21	74.7	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|296242942|ref|YP_003650429.1|	-	5.4e-16	58.5	0.0	6.3e-16	58.3	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|296242942|ref|YP_003650429.1|	-	5.3e-15	55.3	0.0	2e-14	53.4	0.0	1.7	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|296242942|ref|YP_003650429.1|	-	6.5e-11	41.9	0.3	2.5e-09	36.7	0.3	2.5	1	1	0	1	1	1	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|296242942|ref|YP_003650429.1|	-	2.6e-10	40.5	0.0	4.1e-10	39.9	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|296242942|ref|YP_003650429.1|	-	3.6e-10	39.8	0.0	3.9e-09	36.4	0.0	2.1	1	1	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|296242942|ref|YP_003650429.1|	-	8.6e-08	31.9	0.0	0.00014	21.4	0.0	2.3	2	0	0	2	2	2	2	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|296242942|ref|YP_003650429.1|	-	0.0012	19.1	0.0	0.0022	18.2	0.0	1.3	1	0	0	1	1	1	1	TrkA-N	domain
KR	PF08659.10	gi|296242942|ref|YP_003650429.1|	-	0.061	13.2	0.8	0.72	9.7	0.8	2.3	1	1	0	1	1	1	0	KR	domain
3HCDH_N	PF02737.18	gi|296242942|ref|YP_003650429.1|	-	0.13	12.2	0.0	0.2	11.6	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|296242942|ref|YP_003650429.1|	-	0.14	12.4	0.0	0.55	10.5	0.0	2.0	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
ThiF	PF00899.21	gi|296242942|ref|YP_003650429.1|	-	0.15	11.4	0.1	6.1	6.1	0.0	2.3	2	0	0	2	2	2	0	ThiF	family
FeoB_N	PF02421.18	gi|296242943|ref|YP_003650430.1|	-	9.6e-47	158.4	0.0	1.7e-46	157.6	0.0	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Gate	PF07670.14	gi|296242943|ref|YP_003650430.1|	-	3.6e-22	78.7	21.6	1.6e-17	63.8	4.2	3.1	3	0	0	3	3	3	2	Nucleoside	recognition
MMR_HSR1	PF01926.23	gi|296242943|ref|YP_003650430.1|	-	1.5e-20	73.4	0.0	2.7e-20	72.6	0.0	1.4	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_Cyto	PF17910.1	gi|296242943|ref|YP_003650430.1|	-	1.2e-13	51.4	0.0	2.2e-13	50.5	0.0	1.4	1	0	0	1	1	1	1	FeoB	cytosolic	helical	domain
SRPRB	PF09439.10	gi|296242943|ref|YP_003650430.1|	-	2.9e-05	23.6	0.1	0.00011	21.8	0.0	1.8	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
FeoB_C	PF07664.12	gi|296242943|ref|YP_003650430.1|	-	0.0063	16.2	0.3	0.0063	16.2	0.3	3.5	4	0	0	4	4	4	1	Ferrous	iron	transport	protein	B	C	terminus
Dynamin_N	PF00350.23	gi|296242943|ref|YP_003650430.1|	-	0.012	15.7	0.1	0.77	9.8	0.1	2.2	1	1	1	2	2	2	0	Dynamin	family
RsgA_GTPase	PF03193.16	gi|296242943|ref|YP_003650430.1|	-	0.025	14.5	0.0	3.1	7.7	0.0	2.4	2	0	0	2	2	2	0	RsgA	GTPase
PduV-EutP	PF10662.9	gi|296242943|ref|YP_003650430.1|	-	0.17	11.7	0.0	1.1	9.0	0.0	2.2	1	1	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Roc	PF08477.13	gi|296242943|ref|YP_003650430.1|	-	0.22	11.7	0.0	0.35	11.1	0.0	1.4	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
FeoA	PF04023.14	gi|296242944|ref|YP_003650431.1|	-	3.8e-13	49.5	0.8	4.3e-13	49.3	0.8	1.0	1	0	0	1	1	1	1	FeoA	domain
DUF2931	PF11153.8	gi|296242944|ref|YP_003650431.1|	-	0.24	11.1	0.1	0.26	11.0	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2931)
Abhydrolase_1	PF00561.20	gi|296242945|ref|YP_003650432.1|	-	2e-23	83.3	0.0	2.1e-21	76.8	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|296242945|ref|YP_003650432.1|	-	3.2e-21	76.9	0.2	4.2e-21	76.6	0.2	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|296242945|ref|YP_003650432.1|	-	1.5e-14	53.9	0.0	1e-10	41.3	0.0	2.1	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Ndr	PF03096.14	gi|296242945|ref|YP_003650432.1|	-	2.5e-12	46.1	0.0	3.4e-12	45.7	0.0	1.1	1	0	0	1	1	1	1	Ndr	family
Esterase	PF00756.20	gi|296242945|ref|YP_003650432.1|	-	2.1e-06	27.6	0.0	3e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	Putative	esterase
Ser_hydrolase	PF06821.13	gi|296242945|ref|YP_003650432.1|	-	9.8e-06	25.5	0.0	0.043	13.7	0.0	2.2	2	0	0	2	2	2	2	Serine	hydrolase
Abhydrolase_2	PF02230.16	gi|296242945|ref|YP_003650432.1|	-	2e-05	24.5	0.0	0.2	11.5	0.0	3.1	3	0	0	3	3	3	1	Phospholipase/Carboxylesterase
Peptidase_S9	PF00326.21	gi|296242945|ref|YP_003650432.1|	-	0.0001	21.8	0.0	0.13	11.8	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.7	gi|296242945|ref|YP_003650432.1|	-	0.0033	17.2	0.0	1.2	8.8	0.0	2.2	2	0	0	2	2	2	2	Alpha/beta	hydrolase	family
Abhydrolase_3	PF07859.13	gi|296242945|ref|YP_003650432.1|	-	0.0052	16.7	0.0	0.0085	16.0	0.0	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Lipase_3	PF01764.25	gi|296242945|ref|YP_003650432.1|	-	0.0078	16.1	0.0	0.014	15.3	0.0	1.4	1	0	0	1	1	1	1	Lipase	(class	3)
Esterase_phd	PF10503.9	gi|296242945|ref|YP_003650432.1|	-	0.016	14.7	0.1	0.35	10.3	0.0	2.1	2	0	0	2	2	2	0	Esterase	PHB	depolymerase
DUF1057	PF06342.12	gi|296242945|ref|YP_003650432.1|	-	0.023	13.7	0.0	0.045	12.8	0.0	1.4	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Abhydrolase_4	PF08386.10	gi|296242945|ref|YP_003650432.1|	-	0.031	14.4	0.0	0.051	13.7	0.0	1.3	1	0	0	1	1	1	0	TAP-like	protein
Chlorophyllase2	PF12740.7	gi|296242945|ref|YP_003650432.1|	-	0.095	11.6	0.4	0.44	9.4	0.4	1.8	1	1	0	1	1	1	0	Chlorophyllase	enzyme
PGAP1	PF07819.13	gi|296242945|ref|YP_003650432.1|	-	0.13	12.0	0.1	0.41	10.3	0.0	1.8	2	0	0	2	2	2	0	PGAP1-like	protein
FSH1	PF03959.13	gi|296242945|ref|YP_003650432.1|	-	0.16	11.6	0.0	1.3	8.7	0.0	2.2	3	0	0	3	3	3	0	Serine	hydrolase	(FSH1)
LIDHydrolase	PF10230.9	gi|296242945|ref|YP_003650432.1|	-	0.2	11.2	0.0	0.96	8.9	0.0	1.9	2	0	0	2	2	2	0	Lipid-droplet	associated	hydrolase
DUF2920	PF11144.8	gi|296242945|ref|YP_003650432.1|	-	0.21	10.7	0.0	15	4.6	0.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2920)
zf-C2H2_6	PF13912.6	gi|296242946|ref|YP_003650433.1|	-	0.0062	16.5	0.0	0.012	15.5	0.0	1.5	1	0	0	1	1	1	1	C2H2-type	zinc	finger
Ribosomal_L24e	PF01246.20	gi|296242946|ref|YP_003650433.1|	-	0.068	13.4	0.1	0.1	12.8	0.1	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L24e
DUF2208	PF09973.9	gi|296242947|ref|YP_003650434.1|	-	2.9e-67	226.7	9.7	3.3e-67	226.5	9.7	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2208)
Steroid_dh	PF02544.16	gi|296242947|ref|YP_003650434.1|	-	0.081	12.9	0.5	0.081	12.9	0.5	2.7	3	1	0	3	3	3	0	3-oxo-5-alpha-steroid	4-dehydrogenase
DUF72	PF01904.18	gi|296242949|ref|YP_003650436.1|	-	6.8e-31	108.1	0.1	8.4e-31	107.8	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
ACT	PF01842.25	gi|296242950|ref|YP_003650437.1|	-	3.1e-08	33.2	0.0	6.5e-08	32.2	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
MazE_antitoxin	PF04014.18	gi|296242950|ref|YP_003650437.1|	-	3.2e-05	23.7	0.2	5.9e-05	22.9	0.2	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
ACT_4	PF13291.6	gi|296242950|ref|YP_003650437.1|	-	4e-05	24.1	0.0	8.2e-05	23.1	0.0	1.6	1	1	0	1	1	1	1	ACT	domain
ACT_6	PF13740.6	gi|296242950|ref|YP_003650437.1|	-	5.6e-05	23.0	0.0	8.3e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	ACT	domain
ACT_7	PF13840.6	gi|296242950|ref|YP_003650437.1|	-	0.0088	15.8	0.0	0.021	14.6	0.0	1.6	2	0	0	2	2	2	1	ACT	domain
MraZ	PF02381.18	gi|296242950|ref|YP_003650437.1|	-	0.048	13.7	0.0	0.082	12.9	0.0	1.3	1	0	0	1	1	1	0	MraZ	protein,	putative	antitoxin-like
Pribosyltran	PF00156.27	gi|296242951|ref|YP_003650438.1|	-	2.1e-05	24.1	1.0	6.5e-05	22.5	0.2	2.2	2	1	0	2	2	2	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.22	gi|296242951|ref|YP_003650438.1|	-	0.00048	20.1	0.2	0.0019	18.2	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix
Glyco_hydro_39	PF01229.17	gi|296242951|ref|YP_003650438.1|	-	0.082	11.5	0.0	0.12	11.0	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolases	family	39
HTH_31	PF13560.6	gi|296242951|ref|YP_003650438.1|	-	0.12	12.8	0.0	0.36	11.2	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
MRG	PF05712.13	gi|296242952|ref|YP_003650439.1|	-	0.0059	15.9	0.0	0.0059	15.9	0.0	1.1	1	0	0	1	1	1	1	MRG
ERCC3_RAD25_C	PF16203.5	gi|296242953|ref|YP_003650440.1|	-	1.5e-25	89.8	0.0	2.6e-25	89.1	0.0	1.4	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|296242953|ref|YP_003650440.1|	-	8.6e-18	64.7	0.0	2.5e-17	63.2	0.0	1.8	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|296242953|ref|YP_003650440.1|	-	8.9e-17	61.6	0.0	1.8e-16	60.6	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|296242953|ref|YP_003650440.1|	-	3.2e-05	23.8	0.0	8.8e-05	22.3	0.0	1.7	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Alba	PF01918.21	gi|296242955|ref|YP_003650442.1|	-	5.4e-21	74.2	0.7	7e-21	73.8	0.7	1.2	1	0	0	1	1	1	1	Alba
Rpp20	PF12328.8	gi|296242955|ref|YP_003650442.1|	-	0.053	13.5	0.1	0.086	12.8	0.1	1.4	1	1	0	1	1	1	0	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
Topoisom_bac	PF01131.20	gi|296242956|ref|YP_003650443.1|	-	8.3e-68	229.3	0.0	1.9e-67	228.1	0.0	1.6	1	1	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|296242956|ref|YP_003650443.1|	-	2.8e-23	82.1	0.0	7.3e-23	80.8	0.0	1.8	1	0	0	1	1	1	1	Toprim	domain
DEAD	PF00270.29	gi|296242956|ref|YP_003650443.1|	-	1.2e-13	51.3	0.0	7.4e-13	48.6	0.0	2.4	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|296242956|ref|YP_003650443.1|	-	5.7e-07	29.7	0.0	1.5e-06	28.4	0.0	1.7	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.6	gi|296242956|ref|YP_003650443.1|	-	1.5e-05	24.8	0.0	4.1e-05	23.4	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_19	PF13245.6	gi|296242956|ref|YP_003650443.1|	-	8.9e-05	22.9	0.0	0.00033	21.0	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|296242956|ref|YP_003650443.1|	-	0.00015	21.6	0.7	0.00031	20.5	0.0	1.8	2	0	0	2	2	1	1	IstB-like	ATP	binding	protein
Toprim_4	PF13662.6	gi|296242956|ref|YP_003650443.1|	-	0.00025	21.4	0.0	0.0022	18.4	0.0	2.5	2	0	0	2	2	2	1	Toprim	domain
AAA_22	PF13401.6	gi|296242956|ref|YP_003650443.1|	-	0.00059	20.1	1.0	0.0065	16.7	1.0	2.7	1	1	0	1	1	1	1	AAA	domain
OrfB_Zn_ribbon	PF07282.11	gi|296242956|ref|YP_003650443.1|	-	0.0019	18.1	7.9	0.046	13.6	0.3	2.9	3	0	0	3	3	2	2	Putative	transposase	DNA-binding	domain
HypA	PF01155.19	gi|296242956|ref|YP_003650443.1|	-	0.0038	17.2	2.3	0.079	13.0	0.1	2.6	2	0	0	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PhoH	PF02562.16	gi|296242956|ref|YP_003650443.1|	-	0.004	16.6	0.0	0.009	15.5	0.0	1.5	1	0	0	1	1	1	1	PhoH-like	protein
zinc-ribbons_6	PF07191.12	gi|296242956|ref|YP_003650443.1|	-	0.0059	16.6	3.8	0.13	12.3	0.3	2.3	2	0	0	2	2	2	1	zinc-ribbons
Helicase_C	PF00271.31	gi|296242956|ref|YP_003650443.1|	-	0.006	16.9	0.0	0.43	10.9	0.0	3.4	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
AAA_25	PF13481.6	gi|296242956|ref|YP_003650443.1|	-	0.0062	16.1	0.4	0.015	14.8	0.4	1.6	1	0	0	1	1	1	1	AAA	domain
DZR	PF12773.7	gi|296242956|ref|YP_003650443.1|	-	0.015	15.3	5.7	0.62	10.1	1.1	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
OGG_N	PF07934.12	gi|296242956|ref|YP_003650443.1|	-	0.018	15.1	0.1	0.048	13.7	0.1	1.7	1	0	0	1	1	1	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
zf_Rg	PF17915.1	gi|296242956|ref|YP_003650443.1|	-	0.026	13.9	2.0	0.099	12.1	0.6	2.3	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
AAA_11	PF13086.6	gi|296242956|ref|YP_003650443.1|	-	0.049	13.4	0.1	0.24	11.2	0.0	1.9	1	1	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|296242956|ref|YP_003650443.1|	-	0.05	14.0	0.0	0.2	12.0	0.0	2.0	1	0	0	1	1	1	0	AAA	ATPase	domain
DNA_ligase_ZBD	PF03119.16	gi|296242956|ref|YP_003650443.1|	-	0.052	13.6	0.7	7.5	6.7	0.1	2.8	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
AAA_23	PF13476.6	gi|296242956|ref|YP_003650443.1|	-	0.065	13.7	0.2	0.15	12.5	0.2	1.5	1	0	0	1	1	1	0	AAA	domain
zinc_ribbon_11	PF11682.8	gi|296242956|ref|YP_003650443.1|	-	0.11	12.5	0.2	0.28	11.2	0.2	1.6	1	0	0	1	1	1	0	Probable	zinc-ribbon
DUF1272	PF06906.11	gi|296242956|ref|YP_003650443.1|	-	0.39	10.8	3.2	3.4	7.8	0.1	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
DUF35_N	PF12172.8	gi|296242956|ref|YP_003650443.1|	-	2	8.4	16.1	0.024	14.5	4.2	2.9	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn-ribbon_8	PF09723.10	gi|296242956|ref|YP_003650443.1|	-	2.5	8.3	11.0	0.82	9.8	2.1	2.8	2	1	0	2	2	2	0	Zinc	ribbon	domain
Prok-RING_1	PF14446.6	gi|296242956|ref|YP_003650443.1|	-	3.1	7.8	7.9	3.6	7.6	2.2	2.4	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
Rad50_zn_hook	PF04423.14	gi|296242956|ref|YP_003650443.1|	-	7	6.6	6.1	2.1	8.3	0.1	2.9	2	1	1	3	3	3	0	Rad50	zinc	hook	motif
Alba	PF01918.21	gi|296242957|ref|YP_003650444.1|	-	1.9e-09	37.2	0.5	3.3e-09	36.4	0.1	1.6	2	0	0	2	2	2	1	Alba
Ribo_biogen_C	PF04034.13	gi|296242958|ref|YP_003650445.1|	-	1.6e-38	131.3	0.0	1.9e-38	131.1	0.0	1.0	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
AsnC_trans_reg	PF01037.21	gi|296242959|ref|YP_003650446.1|	-	1.2e-15	57.3	2.1	1.3e-15	57.1	2.1	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HMA	PF00403.26	gi|296242959|ref|YP_003650446.1|	-	0.0006	20.2	1.3	0.00087	19.7	1.1	1.4	1	1	0	1	1	1	1	Heavy-metal-associated	domain
GYD	PF08734.11	gi|296242959|ref|YP_003650446.1|	-	0.019	14.9	0.1	0.02	14.8	0.1	1.3	1	0	0	1	1	1	0	GYD	domain
SnoaL	PF07366.12	gi|296242959|ref|YP_003650446.1|	-	0.12	12.1	0.0	0.15	11.9	0.0	1.1	1	0	0	1	1	1	0	SnoaL-like	polyketide	cyclase
Spore_YhcN_YlaJ	PF09580.10	gi|296242959|ref|YP_003650446.1|	-	0.18	11.9	1.7	0.22	11.6	1.7	1.1	1	0	0	1	1	1	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
tRNA-synt_1b	PF00579.25	gi|296242960|ref|YP_003650447.1|	-	7.6e-48	163.3	0.0	2e-46	158.6	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Lactamase_B_2	PF12706.7	gi|296242961|ref|YP_003650448.1|	-	3.8e-23	82.1	0.0	6e-23	81.4	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|296242961|ref|YP_003650448.1|	-	2.2e-22	79.7	0.1	3e-22	79.3	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|296242961|ref|YP_003650448.1|	-	5.5e-13	49.4	2.8	1.3e-12	48.1	2.8	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Peptidase_M24	PF00557.24	gi|296242962|ref|YP_003650449.1|	-	2.3e-38	132.0	0.0	3.5e-38	131.4	0.0	1.3	1	1	0	1	1	1	1	Metallopeptidase	family	M24
TPR_16	PF13432.6	gi|296242962|ref|YP_003650449.1|	-	0.014	16.0	0.6	0.37	11.5	0.2	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
DUF1512	PF07431.12	gi|296242963|ref|YP_003650450.1|	-	1.3e-148	494.8	9.0	1.5e-148	494.6	9.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1512)
Zn-ribbon_8	PF09723.10	gi|296242964|ref|YP_003650451.1|	-	0.015	15.4	2.0	0.031	14.4	2.0	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
TackOD1	PF18551.1	gi|296242964|ref|YP_003650451.1|	-	0.02	14.6	0.2	0.025	14.3	0.2	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
DUF2089	PF09862.9	gi|296242964|ref|YP_003650451.1|	-	0.026	14.5	0.2	0.86	9.6	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2089)
DZR	PF12773.7	gi|296242964|ref|YP_003650451.1|	-	0.041	13.9	0.1	0.063	13.3	0.1	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
FeoB_associated	PF12669.7	gi|296242964|ref|YP_003650451.1|	-	0.054	13.9	3.4	0.065	13.6	0.3	2.1	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
zf-IS66	PF13005.7	gi|296242964|ref|YP_003650451.1|	-	0.054	13.9	1.0	0.24	11.8	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-ribbon_3	PF13248.6	gi|296242964|ref|YP_003650451.1|	-	0.055	12.9	2.2	0.89	9.1	0.5	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|296242964|ref|YP_003650451.1|	-	0.06	13.3	0.3	13	5.8	0.0	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
Zn_Tnp_IS1595	PF12760.7	gi|296242964|ref|YP_003650451.1|	-	0.074	13.0	0.5	4.5	7.3	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf_Rg	PF17915.1	gi|296242964|ref|YP_003650451.1|	-	0.081	12.3	0.1	0.081	12.3	0.1	1.6	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
zf-C4_Topoisom	PF01396.19	gi|296242964|ref|YP_003650451.1|	-	0.098	12.5	0.5	0.098	12.5	0.5	2.3	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-TFIIB	PF13453.6	gi|296242964|ref|YP_003650451.1|	-	0.1	11.9	2.1	0.19	11.1	2.1	1.5	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
HypA	PF01155.19	gi|296242964|ref|YP_003650451.1|	-	0.13	12.3	0.0	0.15	12.1	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
YukC	PF10140.9	gi|296242964|ref|YP_003650451.1|	-	0.24	10.2	0.3	0.31	9.8	0.3	1.1	1	0	0	1	1	1	0	WXG100	protein	secretion	system	(Wss),	protein	YukC
zinc_ribbon_2	PF13240.6	gi|296242964|ref|YP_003650451.1|	-	0.36	10.6	5.4	4.8	7.0	0.8	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-tcix	PF14952.6	gi|296242964|ref|YP_003650451.1|	-	0.77	9.4	5.0	7.2	6.3	1.1	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
DUF983	PF06170.12	gi|296242964|ref|YP_003650451.1|	-	1.8	9.0	4.7	6.5	7.2	0.2	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF983)
FixH	PF05751.11	gi|296242965|ref|YP_003650452.1|	-	0.23	11.5	1.2	0.9	9.5	0.0	2.1	2	0	0	2	2	2	0	FixH
DUF131	PF01998.17	gi|296242966|ref|YP_003650453.1|	-	4.5e-09	35.8	5.7	4.5e-09	35.8	5.7	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF131
Claudin_2	PF13903.6	gi|296242966|ref|YP_003650453.1|	-	2.5	7.8	8.9	13	5.5	8.9	1.9	1	1	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF202	PF02656.15	gi|296242966|ref|YP_003650453.1|	-	3.8	8.0	8.7	2.1	8.8	1.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
DUF1805	PF08827.11	gi|296242967|ref|YP_003650454.1|	-	2.5e-19	69.4	0.2	3.7e-19	68.8	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1805)
PK	PF00224.21	gi|296242968|ref|YP_003650455.1|	-	8.8e-87	291.2	0.0	1.1e-86	290.8	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|296242968|ref|YP_003650455.1|	-	5.4e-10	39.5	0.0	1.8e-09	37.8	0.0	1.9	2	0	0	2	2	2	1	Pyruvate	kinase,	alpha/beta	domain
F_bP_aldolase	PF01116.20	gi|296242968|ref|YP_003650455.1|	-	0.085	12.3	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Fructose-bisphosphate	aldolase	class-II
E1-E2_ATPase	PF00122.20	gi|296242969|ref|YP_003650456.1|	-	1.9e-47	161.1	1.4	1.9e-47	161.1	1.4	2.4	3	0	0	3	3	3	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|296242969|ref|YP_003650456.1|	-	1.6e-33	116.8	0.0	2.6e-33	116.1	0.0	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|296242969|ref|YP_003650456.1|	-	1e-09	38.7	1.0	4e-07	30.4	0.1	3.0	3	0	0	3	3	3	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|296242969|ref|YP_003650456.1|	-	4.8e-08	33.0	0.1	4.3e-06	26.7	0.3	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
YHS	PF04945.13	gi|296242970|ref|YP_003650457.1|	-	4.8e-23	81.0	1.1	5.5e-23	80.8	1.1	1.1	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.10	gi|296242970|ref|YP_003650457.1|	-	0.00035	20.9	1.2	0.00044	20.5	1.2	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
FAP206	PF12018.8	gi|296242970|ref|YP_003650457.1|	-	0.0004	20.0	0.1	0.00047	19.7	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function
zf-FCS	PF06467.14	gi|296242970|ref|YP_003650457.1|	-	0.0022	17.9	0.3	0.0034	17.3	0.3	1.3	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF2116	PF09889.9	gi|296242970|ref|YP_003650457.1|	-	0.032	14.2	0.3	0.6	10.1	0.1	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
NosL	PF05573.12	gi|296242970|ref|YP_003650457.1|	-	0.15	12.4	0.0	0.17	12.2	0.0	1.1	1	0	0	1	1	1	0	NosL
TIM	PF00121.18	gi|296242971|ref|YP_003650458.1|	-	1.6e-15	57.2	0.0	2.8e-14	53.1	0.0	2.0	1	1	1	2	2	2	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|296242971|ref|YP_003650458.1|	-	2.6e-05	23.7	0.5	5.1e-05	22.7	0.5	1.5	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.21	gi|296242971|ref|YP_003650458.1|	-	0.016	14.4	0.0	0.02	14.1	0.0	1.2	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
FMN_dh	PF01070.18	gi|296242971|ref|YP_003650458.1|	-	0.041	12.9	0.3	0.077	12.0	0.3	1.4	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
FBPase_3	PF01950.16	gi|296242972|ref|YP_003650459.1|	-	2e-186	619.4	0.0	2.3e-186	619.2	0.0	1.0	1	0	0	1	1	1	1	Fructose-1,6-bisphosphatase
ABC_tran	PF00005.27	gi|296242973|ref|YP_003650460.1|	-	5.7e-43	146.7	0.0	8.6e-23	81.4	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|296242973|ref|YP_003650460.1|	-	1.1e-13	51.7	12.9	0.0032	17.3	0.0	4.2	2	2	2	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RLI	PF04068.15	gi|296242973|ref|YP_003650460.1|	-	2.5e-13	49.6	4.1	6.5e-13	48.3	4.1	1.7	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
SMC_N	PF02463.19	gi|296242973|ref|YP_003650460.1|	-	5.8e-13	48.8	6.3	4.4e-05	23.0	1.1	3.6	2	2	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
Fer4	PF00037.27	gi|296242973|ref|YP_003650460.1|	-	2.1e-09	36.8	3.7	2.1e-09	36.8	3.7	2.8	3	1	0	3	3	2	1	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|296242973|ref|YP_003650460.1|	-	5.6e-08	32.5	12.1	1.9e-06	27.7	2.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|296242973|ref|YP_003650460.1|	-	7.4e-07	29.2	20.3	0.00011	22.2	11.4	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296242973|ref|YP_003650460.1|	-	1.4e-06	28.3	9.0	2.6e-06	27.5	9.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|296242973|ref|YP_003650460.1|	-	3.3e-06	27.6	17.9	0.00028	21.4	1.8	1.9	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Rad17	PF03215.15	gi|296242973|ref|YP_003650460.1|	-	2.5e-05	24.3	0.1	0.17	11.8	0.0	2.3	2	0	0	2	2	2	2	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|296242973|ref|YP_003650460.1|	-	3e-05	24.6	0.6	0.24	11.9	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|296242973|ref|YP_003650460.1|	-	3e-05	24.6	0.7	0.31	11.6	0.2	3.2	2	1	0	2	2	2	2	AAA	domain
RsgA_GTPase	PF03193.16	gi|296242973|ref|YP_003650460.1|	-	6.1e-05	23.0	0.2	0.076	12.9	0.0	3.0	4	0	0	4	4	2	1	RsgA	GTPase
AAA_33	PF13671.6	gi|296242973|ref|YP_003650460.1|	-	7.6e-05	22.9	0.0	0.16	12.1	0.0	3.1	2	2	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|296242973|ref|YP_003650460.1|	-	0.0001	22.6	0.6	0.54	10.5	0.4	3.0	3	1	0	3	3	2	2	AAA	domain
Fer4_9	PF13187.6	gi|296242973|ref|YP_003650460.1|	-	0.00022	21.3	8.0	0.00041	20.5	8.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296242973|ref|YP_003650460.1|	-	0.00029	20.8	1.0	0.00029	20.8	1.0	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA	PF00004.29	gi|296242973|ref|YP_003650460.1|	-	0.00036	21.0	0.0	0.75	10.2	0.0	3.0	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MMR_HSR1	PF01926.23	gi|296242973|ref|YP_003650460.1|	-	0.00077	19.5	0.5	0.37	10.9	0.1	2.7	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|296242973|ref|YP_003650460.1|	-	0.00078	19.3	0.6	1.9	8.1	0.1	3.2	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|296242973|ref|YP_003650460.1|	-	0.0012	18.5	3.2	0.4	10.4	0.1	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|296242973|ref|YP_003650460.1|	-	0.0015	19.0	0.9	0.35	11.2	0.0	2.8	3	1	0	3	3	2	1	AAA	ATPase	domain
Fer4_16	PF13484.6	gi|296242973|ref|YP_003650460.1|	-	0.0031	18.4	8.7	0.015	16.2	2.4	2.4	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
SbcCD_C	PF13558.6	gi|296242973|ref|YP_003650460.1|	-	0.004	17.4	0.3	5.7	7.2	0.1	3.0	2	2	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
KAP_NTPase	PF07693.14	gi|296242973|ref|YP_003650460.1|	-	0.0052	16.1	0.0	0.24	10.6	0.0	2.2	2	0	0	2	2	2	1	KAP	family	P-loop	domain
AAA_24	PF13479.6	gi|296242973|ref|YP_003650460.1|	-	0.0059	16.4	3.0	1.1	9.0	0.1	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|296242973|ref|YP_003650460.1|	-	0.0063	16.3	0.6	2.8	7.6	0.0	2.6	3	0	0	3	3	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|296242973|ref|YP_003650460.1|	-	0.0067	16.8	0.1	1.5	9.2	0.0	2.6	2	0	0	2	2	2	1	RNA	helicase
AAA_14	PF13173.6	gi|296242973|ref|YP_003650460.1|	-	0.012	15.7	0.3	1	9.4	0.0	3.3	3	1	0	3	3	3	0	AAA	domain
NB-ARC	PF00931.22	gi|296242973|ref|YP_003650460.1|	-	0.017	14.3	0.0	1	8.5	0.0	2.4	2	0	0	2	2	2	0	NB-ARC	domain
Thymidylate_kin	PF02223.17	gi|296242973|ref|YP_003650460.1|	-	0.027	14.1	0.2	9	5.9	0.0	2.9	3	0	0	3	3	3	0	Thymidylate	kinase
Fer4_17	PF13534.6	gi|296242973|ref|YP_003650460.1|	-	0.043	14.4	1.2	0.043	14.4	1.2	2.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
SRP54	PF00448.22	gi|296242973|ref|YP_003650460.1|	-	0.055	13.1	1.0	4.9	6.7	0.3	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
MeaB	PF03308.16	gi|296242973|ref|YP_003650460.1|	-	0.062	12.3	2.2	1.3	8.0	0.1	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_28	PF13521.6	gi|296242973|ref|YP_003650460.1|	-	0.073	13.3	1.3	23	5.2	0.4	3.5	3	1	0	3	3	3	0	AAA	domain
dNK	PF01712.19	gi|296242973|ref|YP_003650460.1|	-	0.18	11.6	0.4	16	5.3	0.1	2.6	2	0	0	2	2	2	0	Deoxynucleoside	kinase
DUF87	PF01935.17	gi|296242973|ref|YP_003650460.1|	-	0.21	11.7	6.6	1.3	9.1	0.2	3.1	2	1	0	2	2	2	0	Helicase	HerA,	central	domain
DUF359	PF04019.12	gi|296242973|ref|YP_003650460.1|	-	0.21	11.2	1.3	1.7	8.3	0.1	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF359)
ATP_bind_1	PF03029.17	gi|296242973|ref|YP_003650460.1|	-	0.24	11.2	1.4	5	6.8	0.0	2.7	3	0	0	3	3	2	0	Conserved	hypothetical	ATP	binding	protein
Ribophorin_I	PF04597.14	gi|296242973|ref|YP_003650460.1|	-	0.25	10.5	1.1	2.6	7.1	0.1	2.2	2	0	0	2	2	2	0	Ribophorin	I
NACHT	PF05729.12	gi|296242973|ref|YP_003650460.1|	-	0.39	10.6	1.6	10	6.0	0.0	2.5	2	0	0	2	2	2	0	NACHT	domain
Fer4_4	PF12800.7	gi|296242973|ref|YP_003650460.1|	-	0.44	11.2	13.7	0.053	14.1	3.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|296242973|ref|YP_003650460.1|	-	1.5	9.3	8.6	0.089	13.3	1.9	2.0	1	1	1	2	2	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|296242973|ref|YP_003650460.1|	-	2.4	9.3	15.0	0.17	12.9	4.2	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
RNA_POL_M_15KD	PF02150.16	gi|296242974|ref|YP_003650461.1|	-	1.1e-06	28.4	1.0	1.8e-06	27.7	1.0	1.4	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
zf-NADH-PPase	PF09297.11	gi|296242974|ref|YP_003650461.1|	-	1.6e-05	24.4	4.4	0.00039	20.0	4.4	2.3	1	1	1	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|296242974|ref|YP_003650461.1|	-	0.00016	21.2	4.8	0.14	11.9	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|296242974|ref|YP_003650461.1|	-	0.00035	20.4	1.7	0.024	14.5	0.2	2.3	2	0	0	2	2	2	1	Nudix	N-terminal
zf-TFIIB	PF13453.6	gi|296242974|ref|YP_003650461.1|	-	0.0011	18.2	1.5	0.0019	17.5	1.5	1.4	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
DZR	PF12773.7	gi|296242974|ref|YP_003650461.1|	-	0.0015	18.5	0.7	0.0026	17.8	0.7	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|296242974|ref|YP_003650461.1|	-	0.0042	16.6	1.0	0.0075	15.8	1.0	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|296242974|ref|YP_003650461.1|	-	0.0058	16.6	1.4	0.01	15.8	1.4	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|296242974|ref|YP_003650461.1|	-	0.0079	16.5	2.2	0.011	16.1	2.2	1.4	1	1	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf_UBZ	PF18439.1	gi|296242974|ref|YP_003650461.1|	-	0.022	14.3	1.0	3.6	7.2	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|296242974|ref|YP_003650461.1|	-	0.03	13.7	2.8	1.4	8.4	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
C1_1	PF00130.22	gi|296242974|ref|YP_003650461.1|	-	0.043	13.7	0.7	0.063	13.2	0.7	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF2387	PF09526.10	gi|296242974|ref|YP_003650461.1|	-	0.045	13.9	0.1	0.081	13.1	0.1	1.4	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
TFIIS_C	PF01096.18	gi|296242974|ref|YP_003650461.1|	-	0.046	13.6	2.9	0.54	10.2	0.4	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF896	PF05979.12	gi|296242974|ref|YP_003650461.1|	-	0.053	13.4	0.4	0.097	12.6	0.4	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF896)
IBR	PF01485.21	gi|296242974|ref|YP_003650461.1|	-	0.054	13.7	0.8	0.054	13.7	0.8	1.7	2	0	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
OrfB_Zn_ribbon	PF07282.11	gi|296242974|ref|YP_003650461.1|	-	0.063	13.2	1.4	0.15	12.0	0.8	1.9	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-C4_Topoisom	PF01396.19	gi|296242974|ref|YP_003650461.1|	-	0.086	12.6	4.7	0.15	11.8	4.7	1.5	1	0	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc-ribbons_6	PF07191.12	gi|296242974|ref|YP_003650461.1|	-	0.088	12.8	0.9	0.15	12.1	0.6	1.5	1	1	0	1	1	1	0	zinc-ribbons
zf-IS66	PF13005.7	gi|296242974|ref|YP_003650461.1|	-	0.09	13.2	1.4	1.2	9.6	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn-ribbon_8	PF09723.10	gi|296242974|ref|YP_003650461.1|	-	0.1	12.8	2.5	9	6.5	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
eIF-5_eIF-2B	PF01873.17	gi|296242974|ref|YP_003650461.1|	-	0.11	12.4	1.4	0.12	12.2	0.2	1.6	2	1	0	2	2	2	0	Domain	found	in	IF2B/IF5
Auto_anti-p27	PF06677.12	gi|296242974|ref|YP_003650461.1|	-	0.13	12.4	3.9	0.3	11.3	4.0	1.6	1	1	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-Mss51	PF13824.6	gi|296242974|ref|YP_003650461.1|	-	0.17	12.0	3.7	2.6	8.2	3.7	2.2	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF1451	PF07295.11	gi|296242974|ref|YP_003650461.1|	-	0.26	11.3	7.1	0.16	12.0	0.3	2.4	1	1	2	3	3	3	0	Zinc-ribbon	containing	domain
UPF0547	PF10571.9	gi|296242974|ref|YP_003650461.1|	-	0.38	10.9	5.2	6	7.0	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
HscB_4_cys	PF18256.1	gi|296242974|ref|YP_003650461.1|	-	0.71	9.7	5.4	4	7.3	5.8	2.0	1	1	0	1	1	1	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
Zn_ribbon_recom	PF13408.6	gi|296242974|ref|YP_003650461.1|	-	0.77	10.3	6.9	7.7	7.1	6.9	2.1	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
Rubredoxin_2	PF18073.1	gi|296242974|ref|YP_003650461.1|	-	2.2	8.1	5.5	1.3	8.8	0.4	2.1	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
NOB1_Zn_bind	PF08772.11	gi|296242974|ref|YP_003650461.1|	-	5.6	7.2	6.4	37	4.6	6.3	2.2	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Ribosomal_S17e	PF00833.18	gi|296242975|ref|YP_003650462.1|	-	4.7e-17	62.0	0.4	4.9e-17	62.0	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	S17
Toprim_4	PF13662.6	gi|296242977|ref|YP_003650464.1|	-	4.9e-10	39.7	0.7	1.7e-09	38.0	0.2	2.1	2	0	0	2	2	2	1	Toprim	domain
Toprim_2	PF13155.6	gi|296242977|ref|YP_003650464.1|	-	4.2e-07	30.3	0.0	1.1e-06	28.9	0.0	1.7	1	0	0	1	1	1	1	Toprim-like
Toprim	PF01751.22	gi|296242977|ref|YP_003650464.1|	-	0.00018	21.7	0.3	0.0014	18.8	0.1	2.5	2	0	0	2	2	2	1	Toprim	domain
7TMR-HDED	PF07697.11	gi|296242977|ref|YP_003650464.1|	-	0.031	14.4	0.2	0.37	10.9	0.1	2.1	2	0	0	2	2	2	0	7TM-HD	extracellular
NOG1_N	PF17835.1	gi|296242977|ref|YP_003650464.1|	-	0.067	13.1	1.2	0.48	10.4	0.1	2.3	2	0	0	2	2	2	0	NOG1	N-terminal	helical	domain
DUF3322	PF11795.8	gi|296242977|ref|YP_003650464.1|	-	0.077	13.0	0.1	0.19	11.7	0.0	1.7	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	N-term	(DUF3322)
HetR_C	PF18460.1	gi|296242977|ref|YP_003650464.1|	-	0.12	12.3	0.2	0.34	10.9	0.2	1.7	1	0	0	1	1	1	0	Heterocyst	differentiation	regulator	C-terminal	Hood	domain
MIT	PF04212.18	gi|296242977|ref|YP_003650464.1|	-	0.35	11.0	2.3	7.8	6.7	0.2	2.6	2	0	0	2	2	2	0	MIT	(microtubule	interacting	and	transport)	domain
Ribosomal_L37e	PF01907.19	gi|296242978|ref|YP_003650465.1|	-	4.3e-24	84.4	12.7	4.8e-24	84.3	12.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
NOB1_Zn_bind	PF08772.11	gi|296242978|ref|YP_003650465.1|	-	0.0056	16.8	1.2	0.007	16.5	1.2	1.2	1	0	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
HypA	PF01155.19	gi|296242978|ref|YP_003650465.1|	-	0.68	10.0	2.8	0.6	10.2	1.6	1.5	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
LSM	PF01423.22	gi|296242979|ref|YP_003650466.1|	-	9.5e-23	79.7	1.1	1e-22	79.5	1.1	1.0	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|296242979|ref|YP_003650466.1|	-	0.011	15.9	0.1	0.013	15.6	0.1	1.2	1	0	0	1	1	1	0	Ataxin	2	SM	domain
LSM14	PF12701.7	gi|296242979|ref|YP_003650466.1|	-	0.035	14.2	0.3	0.04	14.0	0.3	1.1	1	0	0	1	1	1	0	Scd6-like	Sm	domain
PUA	PF01472.20	gi|296242980|ref|YP_003650467.1|	-	7.4e-20	70.7	0.1	1e-19	70.3	0.1	1.2	1	0	0	1	1	1	1	PUA	domain
DUF1947	PF09183.10	gi|296242980|ref|YP_003650467.1|	-	1.1e-11	44.9	0.5	1.7e-11	44.2	0.5	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1947)
UPF0113	PF03657.13	gi|296242980|ref|YP_003650467.1|	-	0.012	15.8	0.0	0.02	15.1	0.0	1.3	1	0	0	1	1	1	0	UPF0113	PUA	domain
GTP_EFTU_D2	PF03144.25	gi|296242980|ref|YP_003650467.1|	-	0.029	14.8	0.2	2.2	8.7	0.0	2.5	1	1	1	2	2	2	0	Elongation	factor	Tu	domain	2
FKBP_C	PF00254.28	gi|296242981|ref|YP_003650468.1|	-	1.7e-10	41.0	0.0	4e-10	39.9	0.0	1.7	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
FKBP26_C	PF18046.1	gi|296242981|ref|YP_003650468.1|	-	0.0028	17.7	0.1	0.0063	16.6	0.1	1.6	1	0	0	1	1	1	1	FKBP26_C-terminal
MS_channel	PF00924.18	gi|296242981|ref|YP_003650468.1|	-	0.31	10.6	1.2	0.78	9.2	1.2	1.6	1	0	0	1	1	1	0	Mechanosensitive	ion	channel
Fe-ADH_2	PF13685.6	gi|296242982|ref|YP_003650469.1|	-	1.4e-72	244.4	0.9	1.8e-72	244.1	0.9	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|296242982|ref|YP_003650469.1|	-	7.8e-24	84.2	2.7	7.5e-23	80.9	2.7	2.0	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|296242982|ref|YP_003650469.1|	-	4.6e-10	39.1	0.0	4.5e-05	22.7	0.0	2.9	2	1	0	2	2	2	2	3-dehydroquinate	synthase
PFK	PF00365.20	gi|296242982|ref|YP_003650469.1|	-	0.063	12.6	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	Phosphofructokinase
HATPase_c_3	PF13589.6	gi|296242982|ref|YP_003650469.1|	-	0.18	11.6	0.0	0.31	10.9	0.0	1.3	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Proteasome	PF00227.26	gi|296242983|ref|YP_003650470.1|	-	4e-52	176.5	0.2	4.6e-52	176.3	0.2	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Beta-Casp	PF10996.8	gi|296242984|ref|YP_003650471.1|	-	7.4e-24	84.2	0.0	1.4e-23	83.3	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
KH_7	PF17214.3	gi|296242984|ref|YP_003650471.1|	-	5.2e-19	68.0	2.5	9e-19	67.2	0.5	2.5	3	0	0	3	3	3	1	KH	domain
Lactamase_B_6	PF16661.5	gi|296242984|ref|YP_003650471.1|	-	6e-15	55.2	0.0	3.3e-14	52.8	0.0	2.0	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily	domain
RMMBL	PF07521.12	gi|296242984|ref|YP_003650471.1|	-	6.6e-15	54.8	0.0	1.6e-14	53.5	0.0	1.6	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|296242984|ref|YP_003650471.1|	-	2.7e-10	40.6	1.7	5.6e-09	36.3	1.7	2.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|296242984|ref|YP_003650471.1|	-	9e-10	38.4	0.1	3.2e-09	36.6	0.1	1.8	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|296242984|ref|YP_003650471.1|	-	0.013	15.4	0.0	0.064	13.2	0.0	2.1	2	0	0	2	2	2	0	Beta-lactamase	superfamily	domain
DUF2220	PF09983.9	gi|296242984|ref|YP_003650471.1|	-	0.081	12.3	0.0	0.16	11.3	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	C-term(DUF2220)
CTP_transf_like	PF01467.26	gi|296242985|ref|YP_003650472.1|	-	1.1e-09	38.7	0.0	1.6e-09	38.1	0.0	1.3	1	0	0	1	1	1	1	Cytidylyltransferase-like
HIGH_NTase1	PF05636.11	gi|296242985|ref|YP_003650472.1|	-	0.12	11.6	0.0	0.17	11.0	0.0	1.2	1	0	0	1	1	1	0	HIGH	Nucleotidyl	Transferase
RTC	PF01137.21	gi|296242986|ref|YP_003650473.1|	-	4.8e-75	251.6	0.0	5.9e-75	251.3	0.0	1.0	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.13	gi|296242986|ref|YP_003650473.1|	-	7.2e-18	65.0	0.0	1.2e-17	64.3	0.0	1.4	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
HEV_ORF1	PF02444.16	gi|296242986|ref|YP_003650473.1|	-	0.028	15.0	0.2	0.069	13.7	0.2	1.6	1	0	0	1	1	1	0	Hepatitis	E	virus	ORF-2	(Putative	capsid	protein)
MMR_HSR1	PF01926.23	gi|296242987|ref|YP_003650474.1|	-	2.9e-21	75.7	0.0	4.4e-21	75.1	0.0	1.3	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
NOG1	PF06858.14	gi|296242987|ref|YP_003650474.1|	-	7e-19	67.4	0.0	1.2e-18	66.6	0.0	1.4	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
FeoB_N	PF02421.18	gi|296242987|ref|YP_003650474.1|	-	3.6e-11	42.8	0.0	5.1e-11	42.3	0.0	1.2	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
NOG1_N	PF17835.1	gi|296242987|ref|YP_003650474.1|	-	2.7e-07	30.7	0.0	4.3e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	NOG1	N-terminal	helical	domain
RsgA_GTPase	PF03193.16	gi|296242987|ref|YP_003650474.1|	-	6.4e-06	26.2	0.2	0.0087	16.0	0.0	2.9	2	1	0	2	2	2	2	RsgA	GTPase
Arf	PF00025.21	gi|296242987|ref|YP_003650474.1|	-	0.0027	17.2	0.0	0.18	11.2	0.0	2.2	2	0	0	2	2	2	1	ADP-ribosylation	factor	family
MMR_HSR1_Xtn	PF16897.5	gi|296242987|ref|YP_003650474.1|	-	0.0037	17.3	0.0	0.006	16.6	0.0	1.3	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
GTP_EFTU	PF00009.27	gi|296242987|ref|YP_003650474.1|	-	0.0074	15.9	0.0	4.2	6.9	0.0	2.8	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
SRPRB	PF09439.10	gi|296242987|ref|YP_003650474.1|	-	0.011	15.1	0.0	0.021	14.3	0.0	1.5	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
cobW	PF02492.19	gi|296242987|ref|YP_003650474.1|	-	0.029	14.0	0.0	8.2	6.0	0.0	2.2	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
MeaB	PF03308.16	gi|296242987|ref|YP_003650474.1|	-	0.061	12.3	0.0	0.14	11.1	0.0	1.6	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Dynamin_N	PF00350.23	gi|296242987|ref|YP_003650474.1|	-	0.078	13.0	0.1	6	6.9	0.0	2.2	1	1	0	2	2	2	0	Dynamin	family
Roc	PF08477.13	gi|296242987|ref|YP_003650474.1|	-	0.087	13.0	0.0	2.5	8.3	0.0	2.2	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
PduV-EutP	PF10662.9	gi|296242987|ref|YP_003650474.1|	-	0.091	12.5	0.0	1.5	8.6	0.0	2.5	1	1	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_16	PF13191.6	gi|296242987|ref|YP_003650474.1|	-	0.11	12.8	0.2	0.61	10.4	0.0	2.1	1	1	1	2	2	2	0	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|296242987|ref|YP_003650474.1|	-	0.17	11.8	0.0	0.41	10.6	0.0	1.6	1	0	0	1	1	1	0	NTPase
AAA_18	PF13238.6	gi|296242987|ref|YP_003650474.1|	-	0.18	12.4	0.0	0.38	11.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
TF_Zn_Ribbon	PF08271.12	gi|296242988|ref|YP_003650475.1|	-	1.1e-09	37.7	1.6	1.9e-09	36.9	1.6	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-RRN7	PF11781.8	gi|296242988|ref|YP_003650475.1|	-	0.0005	19.7	1.8	0.00094	18.8	1.8	1.4	1	0	0	1	1	1	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Auto_anti-p27	PF06677.12	gi|296242988|ref|YP_003650475.1|	-	0.00093	19.3	0.8	0.0015	18.7	0.8	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Prok-RING_1	PF14446.6	gi|296242988|ref|YP_003650475.1|	-	0.037	14.0	0.7	0.055	13.4	0.7	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DNA_ligase_ZBD	PF03119.16	gi|296242988|ref|YP_003650475.1|	-	0.056	13.5	0.1	0.13	12.3	0.1	1.7	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|296242988|ref|YP_003650475.1|	-	0.16	11.9	0.3	0.41	10.7	0.3	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|296242988|ref|YP_003650475.1|	-	0.17	11.8	1.0	2.4	8.2	1.1	2.3	1	1	0	1	1	1	0	Nudix	N-terminal
Proteasome	PF00227.26	gi|296242989|ref|YP_003650476.1|	-	1.9e-53	180.8	0.0	2.4e-53	180.5	0.0	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Nitroreductase	PF00881.24	gi|296242990|ref|YP_003650477.1|	-	6.1e-26	91.5	0.0	7.1e-26	91.3	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|296242990|ref|YP_003650477.1|	-	3.3e-09	36.6	0.0	0.00025	20.7	0.0	3.1	2	1	1	3	3	3	3	Putative	TM	nitroreductase
Rubrerythrin	PF02915.17	gi|296242991|ref|YP_003650478.1|	-	6.4e-28	97.9	3.1	8.8e-28	97.4	3.1	1.2	1	0	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.24	gi|296242991|ref|YP_003650478.1|	-	0.0011	18.9	3.3	0.0049	16.8	3.3	1.8	1	1	0	1	1	1	1	Ferritin-like	domain
PhnA_Zn_Ribbon	PF08274.12	gi|296242991|ref|YP_003650478.1|	-	0.036	14.0	2.5	0.11	12.5	0.0	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-RRN7	PF11781.8	gi|296242991|ref|YP_003650478.1|	-	0.046	13.4	2.7	5.1	6.9	0.2	2.3	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HypA	PF01155.19	gi|296242991|ref|YP_003650478.1|	-	0.05	13.6	0.0	0.083	12.9	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|296242991|ref|YP_003650478.1|	-	0.056	13.5	0.2	0.084	12.9	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|296242991|ref|YP_003650478.1|	-	0.057	13.2	4.2	0.13	12.0	4.2	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
Arc_PepC_II	PF06847.11	gi|296242991|ref|YP_003650478.1|	-	0.077	13.5	0.1	0.34	11.5	0.0	1.9	2	0	0	2	2	2	0	Archaeal	Peptidase	A24	C-terminus	Type	II
Rubredoxin	PF00301.20	gi|296242991|ref|YP_003650478.1|	-	0.084	12.9	3.5	1.9	8.6	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin
zf-Sec23_Sec24	PF04810.15	gi|296242991|ref|YP_003650478.1|	-	0.085	12.9	0.6	0.34	11.0	0.0	2.0	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
Ribosomal_S14	PF00253.21	gi|296242991|ref|YP_003650478.1|	-	0.15	11.8	1.0	0.52	10.1	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	protein	S14p/S29e
zf-MIZ	PF02891.20	gi|296242991|ref|YP_003650478.1|	-	0.25	11.1	3.0	0.9	9.3	0.1	2.3	2	0	0	2	2	2	0	MIZ/SP-RING	zinc	finger
zf-UBP	PF02148.19	gi|296242991|ref|YP_003650478.1|	-	0.28	11.5	1.8	0.64	10.4	0.2	2.1	1	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
DUF3797	PF12677.7	gi|296242991|ref|YP_003650478.1|	-	0.35	10.8	2.1	3.1	7.8	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
TF_Zn_Ribbon	PF08271.12	gi|296242991|ref|YP_003650478.1|	-	0.45	10.1	3.6	9.6	5.8	0.2	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|296242991|ref|YP_003650478.1|	-	0.6	9.6	8.1	4.7	6.8	0.2	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.14	gi|296242991|ref|YP_003650478.1|	-	0.74	9.7	7.6	6.4	6.7	1.0	3.1	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
Zn-ribbon_8	PF09723.10	gi|296242991|ref|YP_003650478.1|	-	1.1	9.4	6.2	18	5.5	0.2	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|296242991|ref|YP_003650478.1|	-	1.1	9.9	5.9	15	6.4	0.3	2.9	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-RanBP	PF00641.18	gi|296242991|ref|YP_003650478.1|	-	1.2	8.5	3.9	5	6.5	0.5	2.2	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
Rad50_zn_hook	PF04423.14	gi|296242991|ref|YP_003650478.1|	-	1.3	8.9	6.0	9.6	6.1	2.1	2.7	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
Zn-C2H2_12	PF18112.1	gi|296242991|ref|YP_003650478.1|	-	1.6	9.3	4.0	29	5.2	0.2	2.5	2	0	0	2	2	2	0	Autophagy	receptor	zinc	finger-C2H2	domain
zf-Mss51	PF13824.6	gi|296242991|ref|YP_003650478.1|	-	1.6	8.9	9.6	2.4	8.3	4.6	2.8	3	0	0	3	3	3	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
ADK_lid	PF05191.14	gi|296242991|ref|YP_003650478.1|	-	1.8	8.6	4.6	4.3	7.4	4.6	1.7	1	0	0	1	1	1	0	Adenylate	kinase,	active	site	lid
zf-NADH-PPase	PF09297.11	gi|296242991|ref|YP_003650478.1|	-	2	8.1	4.7	12	5.7	0.1	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|296242991|ref|YP_003650478.1|	-	2.1	8.4	10.6	8.8	6.5	2.4	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Rubredoxin_2	PF18073.1	gi|296242991|ref|YP_003650478.1|	-	8.4	6.2	6.1	7.9	6.3	0.5	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Aldedh	PF00171.22	gi|296242992|ref|YP_003650479.1|	-	3e-115	385.4	0.0	3.5e-115	385.2	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|296242992|ref|YP_003650479.1|	-	1.7e-06	27.3	0.0	2.8e-06	26.7	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
zf-C2H2_jaz	PF12171.8	gi|296242993|ref|YP_003650480.1|	-	0.014	15.7	0.1	0.03	14.6	0.1	1.6	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
DUF4187	PF13821.6	gi|296242993|ref|YP_003650480.1|	-	0.046	13.5	0.1	0.11	12.3	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4187)
POR_N	PF01855.19	gi|296242994|ref|YP_003650481.1|	-	4e-62	210.0	0.0	5.6e-62	209.5	0.0	1.2	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|296242994|ref|YP_003650481.1|	-	1.7e-22	80.4	0.0	3.1e-22	79.5	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
PFOR_II	PF17147.4	gi|296242994|ref|YP_003650481.1|	-	1.2e-10	41.6	0.0	3.4e-10	40.1	0.0	1.9	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_N	PF02776.18	gi|296242994|ref|YP_003650481.1|	-	0.0012	18.4	0.3	0.017	14.8	0.0	2.7	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Transketolase_C	PF02780.20	gi|296242994|ref|YP_003650481.1|	-	0.0058	16.5	0.0	0.019	14.9	0.0	1.9	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_C	PF02775.21	gi|296242995|ref|YP_003650482.1|	-	1e-27	96.8	0.1	1.5e-27	96.3	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|296242995|ref|YP_003650482.1|	-	2.5e-21	75.6	0.0	4.6e-21	74.7	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
DUF1122	PF06557.11	gi|296242996|ref|YP_003650483.1|	-	3.6e-74	248.0	0.3	5e-74	247.5	0.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1122)
PIN	PF01850.21	gi|296242998|ref|YP_003650485.1|	-	9.4e-12	45.5	0.1	1.3e-11	45.1	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
PALP	PF00291.25	gi|296243001|ref|YP_003650488.1|	-	7.3e-59	199.6	0.0	8.8e-59	199.3	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DNA_ligase_ZBD	PF03119.16	gi|296243001|ref|YP_003650488.1|	-	0.02	14.9	3.1	0.41	10.7	0.3	3.0	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.6	gi|296243001|ref|YP_003650488.1|	-	0.29	10.6	1.8	10	5.7	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Dynactin_p62	PF05502.13	gi|296243001|ref|YP_003650488.1|	-	0.31	9.8	0.9	0.54	9.0	0.9	1.3	1	0	0	1	1	1	0	Dynactin	p62	family
zf-TFIIB	PF13453.6	gi|296243001|ref|YP_003650488.1|	-	1.1	8.7	3.6	6.2	6.2	0.4	2.5	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
SlyX	PF04102.12	gi|296243002|ref|YP_003650489.1|	-	3e-11	43.7	26.1	3.1e-05	24.5	3.8	3.9	1	1	1	3	3	3	3	SlyX
DUF1664	PF07889.12	gi|296243002|ref|YP_003650489.1|	-	2.9e-10	40.2	13.8	3.3e-07	30.4	3.1	3.6	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF1664)
Tektin	PF03148.14	gi|296243002|ref|YP_003650489.1|	-	5.2e-10	38.6	15.2	9.4e-05	21.3	7.9	3.0	2	1	0	2	2	2	2	Tektin	family
DUF16	PF01519.16	gi|296243002|ref|YP_003650489.1|	-	2.1e-08	34.6	17.8	0.013	16.0	1.2	3.2	1	1	2	3	3	3	3	Protein	of	unknown	function	DUF16
Spc7	PF08317.11	gi|296243002|ref|YP_003650489.1|	-	6e-08	31.9	18.7	5.2e-06	25.6	9.8	3.1	2	1	1	3	3	3	2	Spc7	kinetochore	protein
Laminin_II	PF06009.12	gi|296243002|ref|YP_003650489.1|	-	6.5e-08	32.7	18.5	6.8e-05	22.9	5.2	2.5	1	1	0	2	2	2	2	Laminin	Domain	II
NPV_P10	PF05531.12	gi|296243002|ref|YP_003650489.1|	-	8.4e-08	32.6	24.3	0.051	14.0	0.7	4.5	1	1	3	4	4	4	3	Nucleopolyhedrovirus	P10	protein
GAS	PF13851.6	gi|296243002|ref|YP_003650489.1|	-	1.3e-07	31.2	12.0	0.0004	19.8	1.8	2.1	1	1	1	2	2	2	2	Growth-arrest	specific	micro-tubule	binding
DUF948	PF06103.11	gi|296243002|ref|YP_003650489.1|	-	1.6e-07	31.5	11.2	0.0019	18.4	0.6	3.6	1	1	2	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF948)
Baculo_PEP_C	PF04513.12	gi|296243002|ref|YP_003650489.1|	-	3.2e-07	30.5	34.6	0.00053	20.0	20.5	3.0	1	1	2	3	3	3	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
CENP-F_leu_zip	PF10473.9	gi|296243002|ref|YP_003650489.1|	-	3.7e-07	30.3	21.1	0.00069	19.6	5.6	2.4	1	1	1	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
MscS_porin	PF12795.7	gi|296243002|ref|YP_003650489.1|	-	6.3e-07	29.2	38.4	0.013	15.0	10.9	3.0	1	1	1	2	2	2	2	Mechanosensitive	ion	channel	porin	domain
XhlA	PF10779.9	gi|296243002|ref|YP_003650489.1|	-	1.5e-06	28.3	14.7	1.1	9.5	0.8	4.5	2	2	2	4	4	4	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|296243002|ref|YP_003650489.1|	-	2.2e-06	27.9	21.2	0.0065	16.8	1.5	4.9	1	1	4	5	5	5	2	Flagella	accessory	protein	C	(FlaC)
MbeD_MobD	PF04899.12	gi|296243002|ref|YP_003650489.1|	-	2.3e-06	27.6	16.8	0.0048	17.0	1.3	3.7	2	2	1	3	3	3	2	MbeD/MobD	like
PspA_IM30	PF04012.12	gi|296243002|ref|YP_003650489.1|	-	5.4e-06	26.1	10.8	0.29	10.7	0.7	3.3	2	1	0	3	3	3	3	PspA/IM30	family
TolA_bind_tri	PF16331.5	gi|296243002|ref|YP_003650489.1|	-	6.1e-06	26.2	35.2	0.0049	16.9	2.1	3.4	1	1	2	3	3	3	2	TolA	binding	protein	trimerisation
IFT57	PF10498.9	gi|296243002|ref|YP_003650489.1|	-	1e-05	24.7	14.8	0.00014	21.0	2.6	2.2	1	1	1	2	2	2	2	Intra-flagellar	transport	protein	57
Tropomyosin_1	PF12718.7	gi|296243002|ref|YP_003650489.1|	-	1.3e-05	25.4	15.0	0.014	15.6	1.5	3.1	1	1	2	3	3	3	2	Tropomyosin	like
ATG16	PF08614.11	gi|296243002|ref|YP_003650489.1|	-	1.7e-05	25.2	22.2	0.0031	17.7	4.0	3.1	1	1	2	3	3	3	2	Autophagy	protein	16	(ATG16)
DUF2730	PF10805.8	gi|296243002|ref|YP_003650489.1|	-	1.7e-05	24.8	13.7	0.43	10.7	0.4	4.2	2	1	3	5	5	4	2	Protein	of	unknown	function	(DUF2730)
ADIP	PF11559.8	gi|296243002|ref|YP_003650489.1|	-	2e-05	24.7	17.1	0.0062	16.6	1.5	3.1	1	1	2	3	3	3	1	Afadin-	and	alpha	-actinin-Binding
Myosin_tail_1	PF01576.19	gi|296243002|ref|YP_003650489.1|	-	2.1e-05	22.6	18.6	2.7e-05	22.3	8.3	2.0	1	1	1	2	2	2	1	Myosin	tail
DUF724	PF05266.14	gi|296243002|ref|YP_003650489.1|	-	3.2e-05	23.8	6.3	0.04	13.8	1.4	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF724)
EzrA	PF06160.12	gi|296243002|ref|YP_003650489.1|	-	4.7e-05	21.8	15.6	0.001	17.4	9.8	1.9	1	1	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
TPR_MLP1_2	PF07926.12	gi|296243002|ref|YP_003650489.1|	-	4.8e-05	23.4	22.1	0.0024	17.9	13.4	2.8	1	1	1	2	2	2	2	TPR/MLP1/MLP2-like	protein
Apolipoprotein	PF01442.18	gi|296243002|ref|YP_003650489.1|	-	5.2e-05	23.2	19.4	0.0014	18.5	19.4	2.4	1	1	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
Fib_alpha	PF08702.10	gi|296243002|ref|YP_003650489.1|	-	5.4e-05	23.4	19.1	0.005	17.0	6.2	2.6	1	1	2	3	3	3	3	Fibrinogen	alpha/beta	chain	family
DUF4140	PF13600.6	gi|296243002|ref|YP_003650489.1|	-	7e-05	23.2	11.6	0.29	11.6	0.0	5.4	5	1	1	6	6	4	1	N-terminal	domain	of	unknown	function	(DUF4140)
Prefoldin_2	PF01920.20	gi|296243002|ref|YP_003650489.1|	-	7.8e-05	22.6	15.6	0.3	11.0	0.4	4.4	1	1	2	4	4	4	1	Prefoldin	subunit
Filament	PF00038.21	gi|296243002|ref|YP_003650489.1|	-	9.2e-05	22.2	16.5	0.031	13.9	5.4	2.1	1	1	1	2	2	2	2	Intermediate	filament	protein
AAA_13	PF13166.6	gi|296243002|ref|YP_003650489.1|	-	9.7e-05	21.2	10.7	0.00017	20.4	10.7	1.3	1	0	0	1	1	1	1	AAA	domain
Laminin_I	PF06008.14	gi|296243002|ref|YP_003650489.1|	-	9.8e-05	22.2	21.8	0.0013	18.5	21.7	1.9	1	1	0	1	1	1	1	Laminin	Domain	I
DUF4201	PF13870.6	gi|296243002|ref|YP_003650489.1|	-	0.00011	21.9	12.2	0.0021	17.8	5.3	2.2	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4201)
Uso1_p115_C	PF04871.13	gi|296243002|ref|YP_003650489.1|	-	0.00012	22.4	11.1	0.33	11.3	1.5	3.1	1	1	2	3	3	3	2	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
DUF3584	PF12128.8	gi|296243002|ref|YP_003650489.1|	-	0.00013	19.7	9.7	0.00013	19.7	9.7	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
Atg14	PF10186.9	gi|296243002|ref|YP_003650489.1|	-	0.00013	21.2	14.6	0.0056	15.8	3.2	2.3	1	1	1	2	2	2	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Prefoldin	PF02996.17	gi|296243002|ref|YP_003650489.1|	-	0.00015	21.7	16.3	1.4	8.9	0.4	4.8	1	1	4	6	6	6	0	Prefoldin	subunit
DUF4795	PF16043.5	gi|296243002|ref|YP_003650489.1|	-	0.00018	21.2	15.7	0.078	12.6	11.8	2.3	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4795)
Golgin_A5	PF09787.9	gi|296243002|ref|YP_003650489.1|	-	0.00026	20.5	19.5	0.00041	19.9	19.5	1.2	1	0	0	1	1	1	1	Golgin	subfamily	A	member	5
DUF5082	PF16888.5	gi|296243002|ref|YP_003650489.1|	-	0.00036	20.8	21.5	0.32	11.3	12.0	4.2	1	1	0	2	2	2	1	Domain	of	unknown	function	(DUF5082)
Tropomyosin	PF00261.20	gi|296243002|ref|YP_003650489.1|	-	0.00038	19.9	12.2	0.0037	16.7	12.4	2.4	1	1	0	1	1	1	1	Tropomyosin
ABC_tran_CTD	PF16326.5	gi|296243002|ref|YP_003650489.1|	-	0.00041	20.5	21.8	0.9	9.8	0.1	5.0	1	1	3	4	4	4	0	ABC	transporter	C-terminal	domain
Gp58	PF07902.11	gi|296243002|ref|YP_003650489.1|	-	0.00058	18.3	12.2	0.0012	17.2	12.2	1.4	1	0	0	1	1	1	1	gp58-like	protein
BLOC1_2	PF10046.9	gi|296243002|ref|YP_003650489.1|	-	0.00061	20.0	22.8	0.38	11.1	8.3	3.9	1	1	2	3	3	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ZapB	PF06005.12	gi|296243002|ref|YP_003650489.1|	-	0.00083	19.7	25.2	0.0098	16.3	3.4	3.7	1	1	2	3	3	3	1	Cell	division	protein	ZapB
APG6_N	PF17675.1	gi|296243002|ref|YP_003650489.1|	-	0.00086	19.8	7.8	0.00086	19.8	7.8	2.7	1	1	2	3	3	3	1	Apg6	coiled-coil	region
FapA	PF03961.13	gi|296243002|ref|YP_003650489.1|	-	0.00087	18.0	12.5	0.11	11.1	6.0	2.3	1	1	1	2	2	2	2	Flagellar	Assembly	Protein	A
HrpB7	PF09486.10	gi|296243002|ref|YP_003650489.1|	-	0.00097	19.6	5.3	2	8.8	0.2	3.5	1	1	3	4	4	4	0	Bacterial	type	III	secretion	protein	(HrpB7)
DUF4618	PF15397.6	gi|296243002|ref|YP_003650489.1|	-	0.00098	18.6	18.7	0.015	14.8	5.1	2.9	1	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4618)
Mod_r	PF07200.13	gi|296243002|ref|YP_003650489.1|	-	0.0012	18.9	8.8	0.0012	18.9	8.8	2.2	1	1	1	2	2	2	1	Modifier	of	rudimentary	(Mod(r))	protein
COG6	PF06419.11	gi|296243002|ref|YP_003650489.1|	-	0.0014	17.0	1.9	0.0014	17.0	1.9	2.9	1	1	2	3	3	3	1	Conserved	oligomeric	complex	COG6
Fmp27_WPPW	PF10359.9	gi|296243002|ref|YP_003650489.1|	-	0.0014	17.5	16.2	0.18	10.6	0.7	3.1	1	1	2	3	3	3	2	RNA	pol	II	promoter	Fmp27	protein	domain
TMF_TATA_bd	PF12325.8	gi|296243002|ref|YP_003650489.1|	-	0.0017	18.5	20.5	0.087	13.0	11.0	3.2	1	1	2	3	3	3	1	TATA	element	modulatory	factor	1	TATA	binding
DUF4407	PF14362.6	gi|296243002|ref|YP_003650489.1|	-	0.0018	17.7	7.3	0.05	13.0	7.3	2.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
Tup_N	PF08581.10	gi|296243002|ref|YP_003650489.1|	-	0.0022	18.3	13.5	0.71	10.2	2.5	3.3	1	1	2	3	3	3	1	Tup	N-terminal
SHE3	PF17078.5	gi|296243002|ref|YP_003650489.1|	-	0.0024	17.6	19.0	0.0026	17.5	7.6	2.2	1	1	1	2	2	2	1	SWI5-dependent	HO	expression	protein	3
FPP	PF05911.11	gi|296243002|ref|YP_003650489.1|	-	0.0029	15.9	22.0	0.075	11.2	3.0	2.0	1	1	1	2	2	2	2	Filament-like	plant	protein,	long	coiled-coil
TMPIT	PF07851.13	gi|296243002|ref|YP_003650489.1|	-	0.0029	16.9	7.3	0.12	11.6	0.5	2.5	1	1	2	3	3	3	1	TMPIT-like	protein
DivIC	PF04977.15	gi|296243002|ref|YP_003650489.1|	-	0.0029	17.3	20.0	0.53	10.1	1.1	4.6	1	1	3	5	5	5	2	Septum	formation	initiator
DUF4200	PF13863.6	gi|296243002|ref|YP_003650489.1|	-	0.0036	17.7	8.4	0.11	12.9	0.1	2.8	1	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4200)
Sec34	PF04136.15	gi|296243002|ref|YP_003650489.1|	-	0.0037	17.1	20.4	0.017	15.0	2.2	3.3	1	1	2	3	3	3	1	Sec34-like	family
Mce4_CUP1	PF11887.8	gi|296243002|ref|YP_003650489.1|	-	0.0041	16.6	12.1	0.012	15.0	5.1	2.3	1	1	1	2	2	2	1	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
HAUS-augmin3	PF14932.6	gi|296243002|ref|YP_003650489.1|	-	0.0041	16.7	20.4	0.15	11.6	1.2	3.2	1	1	2	3	3	3	2	HAUS	augmin-like	complex	subunit	3
Cob_adeno_trans	PF01923.18	gi|296243002|ref|YP_003650489.1|	-	0.0043	17.2	10.0	0.28	11.3	3.2	2.8	1	1	1	2	2	2	1	Cobalamin	adenosyltransferase
DUF4988	PF16378.5	gi|296243002|ref|YP_003650489.1|	-	0.0047	16.6	16.5	3	7.5	0.5	4.4	3	1	1	4	4	4	0	Domain	of	unknown	function
Lebercilin	PF15619.6	gi|296243002|ref|YP_003650489.1|	-	0.005	16.5	18.8	0.0085	15.8	18.8	1.4	1	1	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Phage_GP20	PF06810.11	gi|296243002|ref|YP_003650489.1|	-	0.0056	16.5	8.6	1.2	8.9	0.2	3.2	1	1	2	3	3	3	0	Phage	minor	structural	protein	GP20
TACC_C	PF05010.14	gi|296243002|ref|YP_003650489.1|	-	0.0067	16.2	6.1	0.64	9.8	4.4	2.2	1	1	1	2	2	2	1	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
HSBP1	PF06825.12	gi|296243002|ref|YP_003650489.1|	-	0.0073	16.1	30.0	0.069	13.0	0.2	5.7	3	1	4	7	7	6	1	Heat	shock	factor	binding	protein	1
Fez1	PF06818.15	gi|296243002|ref|YP_003650489.1|	-	0.0074	16.8	13.5	0.32	11.4	2.3	2.1	1	1	1	2	2	2	1	Fez1
HMMR_N	PF15905.5	gi|296243002|ref|YP_003650489.1|	-	0.0074	15.8	17.9	0.24	10.8	4.0	2.1	1	1	1	2	2	2	2	Hyaluronan	mediated	motility	receptor	N-terminal
CLZ	PF16526.5	gi|296243002|ref|YP_003650489.1|	-	0.0081	16.5	20.1	0.099	13.0	1.1	4.4	1	1	1	3	3	3	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DUF812	PF05667.11	gi|296243002|ref|YP_003650489.1|	-	0.013	14.4	14.7	0.039	12.9	13.4	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
DHR10	PF18595.1	gi|296243002|ref|YP_003650489.1|	-	0.014	15.5	18.4	0.019	15.0	1.8	2.9	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
TMF_DNA_bd	PF12329.8	gi|296243002|ref|YP_003650489.1|	-	0.014	15.4	21.8	0.84	9.7	2.7	4.2	1	1	2	4	4	4	0	TATA	element	modulatory	factor	1	DNA	binding
Seryl_tRNA_N	PF02403.22	gi|296243002|ref|YP_003650489.1|	-	0.014	15.6	14.5	0.045	14.0	2.3	2.8	1	1	2	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
Exonuc_VII_L	PF02601.15	gi|296243002|ref|YP_003650489.1|	-	0.015	14.9	15.6	0.1	12.2	4.9	2.1	1	1	1	2	2	2	0	Exonuclease	VII,	large	subunit
YscO	PF07321.12	gi|296243002|ref|YP_003650489.1|	-	0.015	15.2	8.7	2	8.3	0.1	2.9	1	1	2	3	3	3	0	Type	III	secretion	protein	YscO
SKA2	PF16740.5	gi|296243002|ref|YP_003650489.1|	-	0.021	14.6	17.8	2.1	8.2	5.4	3.6	1	1	2	3	3	3	0	Spindle	and	kinetochore-associated	protein	2
Troponin	PF00992.20	gi|296243002|ref|YP_003650489.1|	-	0.021	15.1	3.2	0.079	13.3	0.2	2.3	1	1	0	2	2	2	0	Troponin
ERM	PF00769.19	gi|296243002|ref|YP_003650489.1|	-	0.028	14.2	9.3	0.56	10.0	0.2	2.1	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
HOOK	PF05622.12	gi|296243002|ref|YP_003650489.1|	-	0.028	12.6	18.2	0.23	9.5	5.3	2.0	1	1	1	2	2	2	0	HOOK	protein
HemX	PF04375.14	gi|296243002|ref|YP_003650489.1|	-	0.029	13.7	17.8	6.3e+02	-0.6	17.8	2.9	1	1	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Snapin_Pallidin	PF14712.6	gi|296243002|ref|YP_003650489.1|	-	0.031	14.7	23.6	0.23	11.9	3.1	3.9	1	1	2	3	3	3	0	Snapin/Pallidin
BRE1	PF08647.11	gi|296243002|ref|YP_003650489.1|	-	0.032	14.3	12.5	0.35	11.0	0.5	3.0	2	1	0	2	2	2	0	BRE1	E3	ubiquitin	ligase
FliJ	PF02050.16	gi|296243002|ref|YP_003650489.1|	-	0.033	14.4	16.9	0.73	10.1	0.3	3.2	1	1	2	3	3	3	0	Flagellar	FliJ	protein
HsbA	PF12296.8	gi|296243002|ref|YP_003650489.1|	-	0.034	14.6	8.5	0.14	12.6	0.4	3.3	1	1	2	3	3	3	0	Hydrophobic	surface	binding	protein	A
KASH_CCD	PF14662.6	gi|296243002|ref|YP_003650489.1|	-	0.034	14.0	21.0	0.15	11.8	4.8	2.2	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155	or	KASH
MAD	PF05557.13	gi|296243002|ref|YP_003650489.1|	-	0.036	12.5	18.0	0.2	10.0	17.8	1.7	1	1	0	1	1	1	0	Mitotic	checkpoint	protein
DASH_Hsk3	PF08227.11	gi|296243002|ref|YP_003650489.1|	-	0.038	14.4	32.9	0.05	14.0	0.1	6.2	4	2	3	7	7	6	0	DASH	complex	subunit	Hsk3	like
CdvA	PF18822.1	gi|296243002|ref|YP_003650489.1|	-	0.041	13.7	16.0	0.75	9.6	0.4	4.0	1	1	3	4	4	4	0	CdvA-like	coiled-coil	domain
Syntaxin-6_N	PF09177.11	gi|296243002|ref|YP_003650489.1|	-	0.044	14.3	17.6	0.48	11.0	5.3	3.7	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Fzo_mitofusin	PF04799.13	gi|296243002|ref|YP_003650489.1|	-	0.048	13.2	16.4	0.12	11.9	1.6	3.8	1	1	3	4	4	4	0	fzo-like	conserved	region
Nsp1_C	PF05064.13	gi|296243002|ref|YP_003650489.1|	-	0.048	13.5	22.6	0.057	13.2	4.7	3.3	1	1	1	3	3	3	0	Nsp1-like	C-terminal	region
Spc24	PF08286.11	gi|296243002|ref|YP_003650489.1|	-	0.055	13.7	22.4	1.3	9.3	0.7	4.6	1	1	3	4	4	4	0	Spc24	subunit	of	Ndc80
APG17	PF04108.12	gi|296243002|ref|YP_003650489.1|	-	0.056	12.5	19.9	0.23	10.5	20.0	2.1	1	1	0	1	1	1	0	Autophagy	protein	Apg17
DUF1359	PF07097.11	gi|296243002|ref|YP_003650489.1|	-	0.062	13.5	3.9	0.12	12.7	0.6	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1359)
LPP	PF04728.13	gi|296243002|ref|YP_003650489.1|	-	0.062	13.7	24.2	0.16	12.4	1.6	5.2	2	2	3	5	5	4	0	Lipoprotein	leucine-zipper
KxDL	PF10241.9	gi|296243002|ref|YP_003650489.1|	-	0.063	13.6	13.7	0.74	10.1	1.8	4.0	1	1	3	4	4	4	0	Uncharacterized	conserved	protein
DUF4763	PF15960.5	gi|296243002|ref|YP_003650489.1|	-	0.065	12.5	18.4	1.1	8.6	0.7	2.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4763)
RmuC	PF02646.16	gi|296243002|ref|YP_003650489.1|	-	0.067	12.3	9.9	2.7	7.1	0.4	3.2	1	1	2	3	3	3	0	RmuC	family
DUF4472	PF14739.6	gi|296243002|ref|YP_003650489.1|	-	0.067	13.9	15.0	0.62	10.8	1.2	2.9	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4472)
Nup54	PF13874.6	gi|296243002|ref|YP_003650489.1|	-	0.073	13.2	17.0	0.24	11.5	5.2	2.7	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
COG2	PF06148.11	gi|296243002|ref|YP_003650489.1|	-	0.086	12.9	19.9	2.5	8.2	6.4	3.3	1	1	1	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF1128	PF06569.11	gi|296243002|ref|YP_003650489.1|	-	0.092	12.8	2.5	4.9	7.2	0.2	3.1	2	2	1	3	3	2	0	Protein	of	unknown	function	(DUF1128)
PI3K_P85_iSH2	PF16454.5	gi|296243002|ref|YP_003650489.1|	-	0.094	12.3	13.7	0.032	13.8	5.2	2.6	1	1	1	2	2	2	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
HAP1_N	PF04849.13	gi|296243002|ref|YP_003650489.1|	-	0.094	11.9	19.2	0.14	11.3	19.2	1.2	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
Occludin_ELL	PF07303.13	gi|296243002|ref|YP_003650489.1|	-	0.11	13.3	3.9	7.6	7.3	0.0	3.2	1	1	2	3	3	3	0	Occludin	homology	domain
CASP_C	PF08172.12	gi|296243002|ref|YP_003650489.1|	-	0.11	11.9	9.5	0.31	10.3	0.3	3.1	3	0	0	3	3	3	0	CASP	C	terminal
zf-C4H2	PF10146.9	gi|296243002|ref|YP_003650489.1|	-	0.11	12.7	11.4	1.3	9.3	0.7	2.1	1	1	1	2	2	2	0	Zinc	finger-containing	protein
DASH_Dam1	PF08653.10	gi|296243002|ref|YP_003650489.1|	-	0.12	12.2	17.4	0.72	9.7	0.8	5.0	4	1	1	5	5	4	0	DASH	complex	subunit	Dam1
MAP65_ASE1	PF03999.12	gi|296243002|ref|YP_003650489.1|	-	0.12	11.0	15.7	0.19	10.4	15.7	1.2	1	0	0	1	1	1	0	Microtubule	associated	protein	(MAP65/ASE1	family)
Jnk-SapK_ap_N	PF09744.9	gi|296243002|ref|YP_003650489.1|	-	0.13	12.5	15.0	1.9	8.7	7.4	2.5	1	1	1	2	2	2	0	JNK_SAPK-associated	protein-1
FH2	PF02181.23	gi|296243002|ref|YP_003650489.1|	-	0.13	11.3	7.7	0.48	9.5	2.0	2.2	1	1	1	2	2	2	0	Formin	Homology	2	Domain
PTRF_SDPR	PF15237.6	gi|296243002|ref|YP_003650489.1|	-	0.14	11.8	7.2	0.063	12.9	0.5	2.2	2	0	0	2	2	2	0	PTRF/SDPR	family
CALCOCO1	PF07888.11	gi|296243002|ref|YP_003650489.1|	-	0.14	11.0	14.1	0.5	9.2	14.1	1.6	1	1	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
YabA	PF06156.13	gi|296243002|ref|YP_003650489.1|	-	0.15	12.7	18.2	6.3	7.5	5.0	3.5	1	1	2	3	3	3	0	Initiation	control	protein	YabA
TIG	PF01833.24	gi|296243002|ref|YP_003650489.1|	-	0.16	12.1	4.2	0.77	9.9	0.2	4.0	5	0	0	5	5	1	0	IPT/TIG	domain
STAT_alpha	PF01017.20	gi|296243002|ref|YP_003650489.1|	-	0.17	11.8	15.8	0.89	9.4	6.7	3.0	1	1	2	3	3	3	0	STAT	protein,	all-alpha	domain
SesA	PF17107.5	gi|296243002|ref|YP_003650489.1|	-	0.18	12.0	9.4	0.27	11.4	2.7	3.0	1	1	1	2	2	2	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
Prominin	PF05478.11	gi|296243002|ref|YP_003650489.1|	-	0.19	9.6	14.9	0.15	10.0	11.0	1.7	1	1	0	1	1	1	0	Prominin
EMP24_GP25L	PF01105.24	gi|296243002|ref|YP_003650489.1|	-	0.2	11.6	10.3	21	5.0	0.5	4.3	1	1	1	3	3	3	0	emp24/gp25L/p24	family/GOLD
UPF0242	PF06785.11	gi|296243002|ref|YP_003650489.1|	-	0.2	11.7	27.4	0.044	13.9	2.0	3.4	2	1	1	3	3	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF1515	PF07439.11	gi|296243002|ref|YP_003650489.1|	-	0.22	11.5	4.1	3.5	7.7	0.2	3.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1515)
Vps5	PF09325.10	gi|296243002|ref|YP_003650489.1|	-	0.24	10.9	14.5	0.74	9.3	2.7	2.5	1	1	1	2	2	2	0	Vps5	C	terminal	like
Syntaxin_2	PF14523.6	gi|296243002|ref|YP_003650489.1|	-	0.25	11.7	23.4	0.23	11.8	3.2	3.3	1	1	1	3	3	3	0	Syntaxin-like	protein
V_ATPase_I	PF01496.19	gi|296243002|ref|YP_003650489.1|	-	0.26	9.2	8.5	0.95	7.3	1.2	2.1	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
COG5	PF10392.9	gi|296243002|ref|YP_003650489.1|	-	0.27	11.4	20.0	1.5	9.0	6.6	3.2	1	1	2	3	3	3	0	Golgi	transport	complex	subunit	5
SKA1	PF07160.12	gi|296243002|ref|YP_003650489.1|	-	0.3	10.9	14.9	3	7.6	0.7	3.2	1	1	3	4	4	4	0	Spindle	and	kinetochore-associated	protein	1
MT	PF12777.7	gi|296243002|ref|YP_003650489.1|	-	0.31	10.0	3.5	2	7.3	0.6	2.1	1	1	1	2	2	2	0	Microtubule-binding	stalk	of	dynein	motor
MCPsignal	PF00015.21	gi|296243002|ref|YP_003650489.1|	-	0.31	10.8	5.9	0.53	10.1	1.1	2.5	1	1	0	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Hemagglutinin	PF00509.18	gi|296243002|ref|YP_003650489.1|	-	0.35	9.2	11.9	0.16	10.3	2.0	2.2	1	1	1	2	2	2	0	Haemagglutinin
Filo_VP35	PF02097.15	gi|296243002|ref|YP_003650489.1|	-	0.37	9.8	8.4	0.4	9.7	0.5	2.8	1	1	2	3	3	3	0	Filoviridae	VP35
FUSC	PF04632.12	gi|296243002|ref|YP_003650489.1|	-	0.37	9.3	7.9	1.5	7.2	7.9	1.8	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Med9	PF07544.13	gi|296243002|ref|YP_003650489.1|	-	0.39	10.8	18.4	0.97	9.6	2.9	3.9	1	1	2	3	3	3	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF489	PF04356.12	gi|296243002|ref|YP_003650489.1|	-	0.4	10.7	11.0	0.29	11.1	4.0	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF489)
HBM	PF16591.5	gi|296243002|ref|YP_003650489.1|	-	0.41	10.0	15.8	1.7	8.0	8.3	2.4	1	1	1	2	2	2	0	Helical	bimodular	sensor	domain
DUF2968	PF11180.8	gi|296243002|ref|YP_003650489.1|	-	0.48	10.0	14.9	0.86	9.2	7.6	2.4	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
Rootletin	PF15035.6	gi|296243002|ref|YP_003650489.1|	-	0.59	10.1	13.8	0.83	9.7	13.3	1.5	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
BST2	PF16716.5	gi|296243002|ref|YP_003650489.1|	-	0.6	10.7	21.7	0.32	11.6	4.8	3.6	1	1	2	3	3	3	0	Bone	marrow	stromal	antigen	2
CREPT	PF16566.5	gi|296243002|ref|YP_003650489.1|	-	0.61	10.2	10.4	0.71	10.0	1.2	2.7	1	1	1	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
AKNA	PF12443.8	gi|296243002|ref|YP_003650489.1|	-	0.62	10.8	9.5	6.7	7.4	0.1	3.5	1	1	3	4	4	2	0	AT-hook-containing	transcription	factor
Uds1	PF15456.6	gi|296243002|ref|YP_003650489.1|	-	0.64	10.2	9.4	10	6.3	5.9	2.8	1	1	1	2	2	2	0	Up-regulated	During	Septation
Phage_GPO	PF05929.11	gi|296243002|ref|YP_003650489.1|	-	0.65	9.6	7.3	1.2	8.7	1.6	2.3	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
WASH_WAHD	PF11945.8	gi|296243002|ref|YP_003650489.1|	-	0.67	9.4	7.8	0.9	9.0	0.7	3.2	1	1	2	3	3	3	0	WAHD	domain	of	WASH	complex
TRAF_BIRC3_bd	PF16673.5	gi|296243002|ref|YP_003650489.1|	-	0.69	9.7	6.8	0.28	11.0	2.5	2.5	2	1	1	3	3	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
FmiP_Thoc5	PF09766.9	gi|296243002|ref|YP_003650489.1|	-	0.7	9.1	17.8	1.3	8.2	1.9	3.5	1	1	2	3	3	3	0	Fms-interacting	protein/Thoc5
AIP3	PF03915.13	gi|296243002|ref|YP_003650489.1|	-	0.71	8.9	10.5	1.1	8.3	10.5	1.2	1	0	0	1	1	1	0	Actin	interacting	protein	3
CEP63	PF17045.5	gi|296243002|ref|YP_003650489.1|	-	0.72	9.7	15.3	1.9	8.3	15.1	1.6	1	1	0	1	1	1	0	Centrosomal	protein	of	63	kDa
DUF2203	PF09969.9	gi|296243002|ref|YP_003650489.1|	-	0.78	10.5	6.5	5.6	7.7	0.2	2.9	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
DegS	PF05384.11	gi|296243002|ref|YP_003650489.1|	-	0.83	9.1	16.5	0.7	9.4	0.3	3.3	1	1	1	3	3	3	0	Sensor	protein	DegS
ApoLp-III	PF07464.11	gi|296243002|ref|YP_003650489.1|	-	1	9.4	9.2	0.73	9.9	2.9	2.3	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
AATF-Che1	PF13339.6	gi|296243002|ref|YP_003650489.1|	-	1.1	10.0	7.8	0.079	13.6	1.2	2.2	1	1	1	2	2	1	0	Apoptosis	antagonizing	transcription	factor
OmpH	PF03938.14	gi|296243002|ref|YP_003650489.1|	-	1.1	9.6	10.0	4.9	7.5	3.9	2.5	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
DUF3450	PF11932.8	gi|296243002|ref|YP_003650489.1|	-	1.3	8.3	22.2	1.9	7.7	2.2	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3450)
FliD_C	PF07195.12	gi|296243002|ref|YP_003650489.1|	-	1.3	8.4	13.9	3.3	7.0	4.1	3.3	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
DUF1759	PF03564.15	gi|296243002|ref|YP_003650489.1|	-	1.4	8.9	5.9	5.2	7.0	2.2	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1759)
GCN5L1	PF06320.13	gi|296243002|ref|YP_003650489.1|	-	1.4	9.1	3.6	1.8	8.7	0.2	2.3	1	1	1	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
WXG100	PF06013.12	gi|296243002|ref|YP_003650489.1|	-	1.5	9.1	14.8	20	5.5	0.1	4.6	1	1	2	4	4	4	0	Proteins	of	100	residues	with	WXG
Vps51	PF08700.11	gi|296243002|ref|YP_003650489.1|	-	1.6	8.9	14.6	12	6.0	0.3	4.9	1	1	5	6	6	6	0	Vps51/Vps67
Taxilin	PF09728.9	gi|296243002|ref|YP_003650489.1|	-	1.7	7.8	13.3	1.8	7.7	0.2	2.0	1	1	0	2	2	2	0	Myosin-like	coiled-coil	protein
T3SSipB	PF16535.5	gi|296243002|ref|YP_003650489.1|	-	1.7	9.1	7.4	3.7	8.0	2.5	2.7	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
DUF2802	PF10975.8	gi|296243002|ref|YP_003650489.1|	-	1.8	8.8	13.3	6.2	7.0	0.7	4.6	3	2	0	3	3	3	0	Protein	of	unknown	function	(DUF2802)
VP4_helical	PF17478.2	gi|296243002|ref|YP_003650489.1|	-	1.9	7.8	9.2	0.16	11.4	4.1	1.6	2	0	0	2	2	1	0	Rotavirus	VP4	helical	domain
CC2-LZ	PF16516.5	gi|296243002|ref|YP_003650489.1|	-	1.9	8.9	10.2	2.1	8.8	0.4	3.4	1	1	0	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
DUF745	PF05335.13	gi|296243002|ref|YP_003650489.1|	-	1.9	8.1	12.6	5.7	6.6	0.8	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF745)
ZapA	PF05164.13	gi|296243002|ref|YP_003650489.1|	-	2.4	8.7	14.6	22	5.6	0.0	3.3	4	1	0	4	4	2	0	Cell	division	protein	ZapA
Swi5	PF07061.11	gi|296243002|ref|YP_003650489.1|	-	2.4	8.3	16.0	26	5.0	2.2	4.8	2	2	0	3	3	3	0	Swi5
CENP-H	PF05837.12	gi|296243002|ref|YP_003650489.1|	-	2.4	8.6	18.3	2.1	8.8	2.1	3.1	1	1	2	3	3	3	0	Centromere	protein	H	(CENP-H)
BLI1	PF17324.2	gi|296243002|ref|YP_003650489.1|	-	2.8	8.6	5.5	3.4	8.4	2.1	2.3	1	1	0	2	2	1	0	BLOC-1	interactor	1
HlyD_2	PF12700.7	gi|296243002|ref|YP_003650489.1|	-	3.1	6.4	13.3	3.8	6.1	5.1	2.3	1	1	1	2	2	2	0	HlyD	family	secretion	protein
bZIP_1	PF00170.21	gi|296243002|ref|YP_003650489.1|	-	3.2	7.9	20.9	9.2	6.5	0.5	4.9	1	1	3	5	5	5	0	bZIP	transcription	factor
TPD52	PF04201.15	gi|296243002|ref|YP_003650489.1|	-	3.3	7.3	12.1	11	5.6	1.2	2.9	1	1	2	3	3	3	0	Tumour	protein	D52	family
RPW8	PF05659.11	gi|296243002|ref|YP_003650489.1|	-	3.3	7.4	6.9	2	8.1	0.2	2.7	1	1	2	3	3	3	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Cluap1	PF10234.9	gi|296243002|ref|YP_003650489.1|	-	3.7	6.9	14.0	1.3	8.3	4.1	2.3	1	1	1	2	2	2	0	Clusterin-associated	protein-1
Dynactin_p22	PF07426.11	gi|296243002|ref|YP_003650489.1|	-	4	7.3	21.9	1.4e+02	2.3	21.6	2.4	1	1	0	1	1	1	0	Dynactin	subunit	p22
USP8_interact	PF08941.10	gi|296243002|ref|YP_003650489.1|	-	4.1	7.2	10.5	32	4.3	0.3	3.2	1	1	2	3	3	3	0	USP8	interacting
DUF4164	PF13747.6	gi|296243002|ref|YP_003650489.1|	-	4.3	7.7	20.4	2.5	8.4	5.9	3.5	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4164)
Rab5-bind	PF09311.11	gi|296243002|ref|YP_003650489.1|	-	4.4	6.6	18.3	14	5.0	18.3	1.8	1	1	0	1	1	1	0	Rabaptin-like	protein
Wtap	PF17098.5	gi|296243002|ref|YP_003650489.1|	-	4.5	7.2	19.9	11	5.9	0.8	2.3	1	1	1	2	2	2	0	WTAP/Mum2p	family
FAM184	PF15665.5	gi|296243002|ref|YP_003650489.1|	-	4.5	7.0	8.0	20	4.9	8.0	1.8	1	1	0	1	1	1	0	Family	with	sequence	similarity	184,	A	and	B
DUF3422	PF11902.8	gi|296243002|ref|YP_003650489.1|	-	4.7	6.2	10.9	3.6	6.6	0.6	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3422)
Sipho_Gp157	PF05565.11	gi|296243002|ref|YP_003650489.1|	-	4.7	7.2	13.3	0.46	10.5	2.2	2.3	1	1	1	2	2	2	0	Siphovirus	Gp157
Muted	PF14942.6	gi|296243002|ref|YP_003650489.1|	-	4.8	7.5	16.3	13	6.1	5.3	2.9	1	1	0	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
ACCA	PF03255.14	gi|296243002|ref|YP_003650489.1|	-	4.8	7.0	7.4	38	4.1	0.1	3.1	1	1	1	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF4559	PF15112.6	gi|296243002|ref|YP_003650489.1|	-	4.9	6.7	12.1	10	5.7	9.9	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4559)
Spectrin	PF00435.21	gi|296243002|ref|YP_003650489.1|	-	5	7.7	14.2	3.7	8.1	1.6	2.6	1	1	1	2	2	2	0	Spectrin	repeat
LXG	PF04740.12	gi|296243002|ref|YP_003650489.1|	-	5.2	6.7	19.6	16	5.1	3.1	3.6	1	1	2	3	3	3	0	LXG	domain	of	WXG	superfamily
MerR-DNA-bind	PF09278.11	gi|296243002|ref|YP_003650489.1|	-	5.3	7.7	17.7	3.3	8.3	4.9	4.0	2	2	1	3	3	3	0	MerR,	DNA	binding
Cast	PF10174.9	gi|296243002|ref|YP_003650489.1|	-	5.8	5.0	16.8	14	3.7	16.8	1.5	1	1	0	1	1	1	0	RIM-binding	protein	of	the	cytomatrix	active	zone
GrpE	PF01025.19	gi|296243002|ref|YP_003650489.1|	-	5.9	6.5	9.1	23	4.6	0.2	2.5	1	1	1	2	2	2	0	GrpE
DUF1978	PF09321.10	gi|296243002|ref|YP_003650489.1|	-	6.2	6.1	9.5	22	4.2	0.5	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1978)
MutS_IV	PF05190.18	gi|296243002|ref|YP_003650489.1|	-	6.5	7.2	7.5	25	5.3	0.2	3.5	3	0	0	3	3	2	0	MutS	family	domain	IV
RasGAP_C	PF03836.15	gi|296243002|ref|YP_003650489.1|	-	6.7	6.9	13.1	3.8	7.7	0.3	3.3	1	1	2	3	3	3	0	RasGAP	C-terminus
KfrA_N	PF11740.8	gi|296243002|ref|YP_003650489.1|	-	6.9	7.4	9.1	49	4.6	0.4	3.4	2	1	1	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
Vip3A_N	PF12495.8	gi|296243002|ref|YP_003650489.1|	-	7.2	6.5	19.7	2.1	8.2	9.5	2.4	1	1	1	2	2	2	0	Vegetative	insecticide	protein	3A	N	terminal
Baculo_F	PF12259.8	gi|296243002|ref|YP_003650489.1|	-	7.7	4.9	9.6	6	5.3	0.7	2.2	1	1	0	2	2	2	0	Baculovirus	F	protein
Bacillus_HBL	PF05791.11	gi|296243002|ref|YP_003650489.1|	-	8.3	6.2	20.1	0.91	9.3	3.2	2.8	1	1	2	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
DLP_helical	PF18709.1	gi|296243002|ref|YP_003650489.1|	-	8.4	5.5	14.4	30	3.7	7.4	2.8	1	1	1	2	2	2	0	Dynamin-like	helical	domain
CK2S	PF15011.6	gi|296243002|ref|YP_003650489.1|	-	8.4	6.3	14.7	4	7.3	2.3	2.9	1	1	2	3	3	3	0	Casein	Kinase	2	substrate
LOH1CR12	PF10158.9	gi|296243002|ref|YP_003650489.1|	-	9.4	6.3	9.0	27	4.8	2.0	2.6	1	1	2	3	3	3	0	Tumour	suppressor	protein
Herpes_UL6	PF01763.16	gi|296243002|ref|YP_003650489.1|	-	9.5	4.6	9.1	9.7	4.6	5.9	1.9	1	1	1	2	2	2	0	Herpesvirus	UL6	like
Trm56	PF01994.16	gi|296243005|ref|YP_003650492.1|	-	4.6e-47	158.8	0.0	6.2e-47	158.4	0.0	1.2	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
MMR_HSR1	PF01926.23	gi|296243006|ref|YP_003650493.1|	-	6.9e-18	64.8	0.0	1.6e-17	63.7	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|296243006|ref|YP_003650493.1|	-	1.7e-16	60.6	3.4	3.3e-16	59.6	3.4	1.5	1	0	0	1	1	1	1	GTP-binding	GTPase	Middle	Region
GTP-bdg_N	PF13167.6	gi|296243006|ref|YP_003650493.1|	-	2.8e-13	50.3	0.6	7.4e-13	49.0	0.3	1.9	2	0	0	2	2	1	1	GTP-binding	GTPase	N-terminal
FeoB_N	PF02421.18	gi|296243006|ref|YP_003650493.1|	-	4.5e-11	42.5	0.5	8.9e-11	41.6	0.0	1.7	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|296243006|ref|YP_003650493.1|	-	2.2e-06	27.4	0.1	0.0023	17.5	0.0	2.2	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.21	gi|296243006|ref|YP_003650493.1|	-	2.2e-05	24.0	0.0	8e-05	22.2	0.0	1.8	1	1	0	1	1	1	1	ADP-ribosylation	factor	family
MMR_HSR1_Xtn	PF16897.5	gi|296243006|ref|YP_003650493.1|	-	4e-05	23.6	0.1	0.00011	22.1	0.1	1.8	2	0	0	2	2	2	1	C-terminal	region	of	MMR_HSR1	domain
PduV-EutP	PF10662.9	gi|296243006|ref|YP_003650493.1|	-	0.00021	21.0	0.3	0.0025	17.6	0.3	2.3	1	1	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_28	PF13521.6	gi|296243006|ref|YP_003650493.1|	-	0.00024	21.4	0.1	0.0012	19.2	0.0	2.2	3	0	0	3	3	3	1	AAA	domain
cobW	PF02492.19	gi|296243006|ref|YP_003650493.1|	-	0.00064	19.4	0.3	0.38	10.3	0.1	2.7	2	1	0	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
SRPRB	PF09439.10	gi|296243006|ref|YP_003650493.1|	-	0.002	17.6	0.0	0.006	16.0	0.0	1.8	1	1	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
RsgA_GTPase	PF03193.16	gi|296243006|ref|YP_003650493.1|	-	0.0086	16.0	0.0	5.2	6.9	0.0	2.5	2	0	0	2	2	2	2	RsgA	GTPase
AAA_23	PF13476.6	gi|296243006|ref|YP_003650493.1|	-	0.034	14.6	1.6	3.7	8.0	0.2	2.6	1	1	1	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|296243006|ref|YP_003650493.1|	-	0.058	13.9	0.0	0.14	12.6	0.0	1.8	1	1	0	1	1	1	0	ABC	transporter
ATP_bind_1	PF03029.17	gi|296243006|ref|YP_003650493.1|	-	0.11	12.3	0.1	2.7	7.7	0.0	2.4	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_16	PF13191.6	gi|296243006|ref|YP_003650493.1|	-	0.13	12.7	0.0	0.29	11.5	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
HTH_3	PF01381.22	gi|296243007|ref|YP_003650494.1|	-	1.7e-10	40.8	1.2	2.6e-10	40.2	1.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|296243007|ref|YP_003650494.1|	-	3.2e-09	36.7	0.5	6.6e-09	35.7	0.5	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|296243007|ref|YP_003650494.1|	-	1.3e-08	35.0	0.1	2.1e-08	34.4	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|296243007|ref|YP_003650494.1|	-	9.7e-05	22.1	0.4	0.00018	21.3	0.4	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF1178	PF06676.11	gi|296243007|ref|YP_003650494.1|	-	0.037	14.4	0.1	0.053	13.9	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1178)
HTH_37	PF13744.6	gi|296243007|ref|YP_003650494.1|	-	0.052	13.5	0.1	0.083	12.9	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sgf11	PF08209.11	gi|296243007|ref|YP_003650494.1|	-	0.071	12.7	2.6	0.25	10.9	0.6	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
MqsA_antitoxin	PF15731.5	gi|296243007|ref|YP_003650494.1|	-	0.45	10.6	2.5	12	6.0	2.2	2.5	1	1	0	1	1	1	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
DUF2703	PF10865.8	gi|296243007|ref|YP_003650494.1|	-	1.5	9.0	4.5	4	7.6	3.4	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2703)
zf-DNL	PF05180.12	gi|296243007|ref|YP_003650494.1|	-	1.6	8.7	4.9	1.4	8.9	3.3	1.7	2	0	0	2	2	2	0	DNL	zinc	finger
AAA	PF00004.29	gi|296243008|ref|YP_003650495.1|	-	4.3e-43	146.9	0.1	1.1e-42	145.6	0.0	1.8	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|296243008|ref|YP_003650495.1|	-	3.2e-17	62.1	0.1	7.1e-17	60.9	0.1	1.6	1	0	0	1	1	1	1	AAA+	lid	domain
Prot_ATP_ID_OB	PF16450.5	gi|296243008|ref|YP_003650495.1|	-	1.7e-11	43.9	1.5	4.6e-11	42.5	1.5	1.8	1	0	0	1	1	1	1	Proteasomal	ATPase	OB	C-terminal	domain
AAA_2	PF07724.14	gi|296243008|ref|YP_003650495.1|	-	7.5e-08	32.7	0.0	3e-07	30.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|296243008|ref|YP_003650495.1|	-	4.5e-07	30.4	0.2	0.00031	21.2	0.1	2.6	1	1	0	2	2	2	1	AAA	ATPase	domain
RuvB_N	PF05496.12	gi|296243008|ref|YP_003650495.1|	-	2.2e-06	27.5	0.0	6.1e-06	26.1	0.0	1.7	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|296243008|ref|YP_003650495.1|	-	3.8e-06	26.9	0.1	1.7e-05	24.9	0.1	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Prot_ATP_OB_N	PF17758.1	gi|296243008|ref|YP_003650495.1|	-	2.1e-05	24.0	2.1	3.4e-05	23.4	0.9	2.0	2	0	0	2	2	1	1	Proteasomal	ATPase	OB	N-terminal	domain
AAA_22	PF13401.6	gi|296243008|ref|YP_003650495.1|	-	0.00012	22.4	0.2	0.008	16.5	0.1	2.6	1	1	1	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|296243008|ref|YP_003650495.1|	-	0.00074	19.0	0.1	0.0025	17.3	0.1	1.9	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
DUF815	PF05673.13	gi|296243008|ref|YP_003650495.1|	-	0.00075	18.7	0.0	0.0033	16.6	0.0	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF815)
TIP49	PF06068.13	gi|296243008|ref|YP_003650495.1|	-	0.00098	18.4	0.4	0.0018	17.6	0.0	1.6	2	0	0	2	2	2	1	TIP49	P-loop	domain
AAA_17	PF13207.6	gi|296243008|ref|YP_003650495.1|	-	0.0012	19.2	0.2	0.0085	16.5	0.0	2.4	3	0	0	3	3	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|296243008|ref|YP_003650495.1|	-	0.0013	18.5	0.0	0.0058	16.4	0.0	2.0	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_14	PF13173.6	gi|296243008|ref|YP_003650495.1|	-	0.0019	18.2	0.1	0.0084	16.1	0.0	2.1	3	0	0	3	3	2	1	AAA	domain
NACHT	PF05729.12	gi|296243008|ref|YP_003650495.1|	-	0.0024	17.8	0.2	0.012	15.5	0.1	2.1	2	0	0	2	2	2	1	NACHT	domain
RNA_helicase	PF00910.22	gi|296243008|ref|YP_003650495.1|	-	0.0036	17.7	0.0	0.017	15.5	0.0	2.0	2	0	0	2	2	2	1	RNA	helicase
AAA_33	PF13671.6	gi|296243008|ref|YP_003650495.1|	-	0.004	17.3	0.0	0.011	15.9	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|296243008|ref|YP_003650495.1|	-	0.0053	16.7	1.4	0.073	13.0	0.0	2.9	2	1	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|296243008|ref|YP_003650495.1|	-	0.0057	17.2	0.0	0.019	15.5	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|296243008|ref|YP_003650495.1|	-	0.0061	16.8	0.0	0.015	15.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|296243008|ref|YP_003650495.1|	-	0.012	14.9	0.3	0.056	12.7	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
Med4	PF10018.9	gi|296243008|ref|YP_003650495.1|	-	0.02	14.6	1.1	0.025	14.3	0.2	1.6	2	0	0	2	2	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
AAA_24	PF13479.6	gi|296243008|ref|YP_003650495.1|	-	0.026	14.3	0.1	0.079	12.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|296243008|ref|YP_003650495.1|	-	0.05	13.6	0.0	0.095	12.7	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_7	PF12775.7	gi|296243008|ref|YP_003650495.1|	-	0.05	13.1	0.0	0.11	12.0	0.0	1.6	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region
ABC_tran	PF00005.27	gi|296243008|ref|YP_003650495.1|	-	0.053	14.0	0.0	0.17	12.4	0.0	2.0	2	0	0	2	2	1	0	ABC	transporter
AAA_25	PF13481.6	gi|296243008|ref|YP_003650495.1|	-	0.069	12.7	0.4	0.17	11.4	0.1	1.8	2	0	0	2	2	1	0	AAA	domain
Rad17	PF03215.15	gi|296243008|ref|YP_003650495.1|	-	0.082	12.8	0.1	0.24	11.3	0.0	1.8	1	1	0	1	1	1	0	Rad17	P-loop	domain
NB-ARC	PF00931.22	gi|296243008|ref|YP_003650495.1|	-	0.11	11.6	0.0	0.27	10.4	0.0	1.6	1	0	0	1	1	1	0	NB-ARC	domain
Phage_GP20	PF06810.11	gi|296243008|ref|YP_003650495.1|	-	0.23	11.3	1.6	9.9	5.9	0.1	2.6	3	0	0	3	3	2	0	Phage	minor	structural	protein	GP20
bZIP_1	PF00170.21	gi|296243008|ref|YP_003650495.1|	-	0.39	10.9	4.4	1.1	9.5	3.4	2.2	2	0	0	2	2	2	0	bZIP	transcription	factor
TGT_C2	PF14810.6	gi|296243009|ref|YP_003650496.1|	-	2.8e-18	65.8	0.0	5.4e-18	64.9	0.0	1.5	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.20	gi|296243009|ref|YP_003650496.1|	-	2.8e-11	43.2	0.0	5.4e-11	42.3	0.0	1.4	2	0	0	2	2	2	1	PUA	domain
PAC2	PF09754.9	gi|296243010|ref|YP_003650497.1|	-	1.1e-33	117.1	0.0	1.3e-33	116.8	0.0	1.1	1	0	0	1	1	1	1	PAC2	family
TGT	PF01702.18	gi|296243011|ref|YP_003650498.1|	-	8.8e-67	225.7	0.0	1.3e-66	225.2	0.0	1.2	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
DUF5591	PF17884.1	gi|296243011|ref|YP_003650498.1|	-	1.8e-05	24.7	0.1	6.3e-05	22.9	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5591)
CHAT	PF12770.7	gi|296243011|ref|YP_003650498.1|	-	0.058	12.8	0.0	0.11	11.9	0.0	1.5	2	0	0	2	2	2	0	CHAT	domain
Lsm_C	PF14894.6	gi|296243012|ref|YP_003650499.1|	-	1.5e-26	91.9	1.0	2.8e-26	91.1	0.3	1.8	2	0	0	2	2	2	1	Lsm	C-terminal
LSM	PF01423.22	gi|296243012|ref|YP_003650499.1|	-	1.7e-08	34.0	0.2	2.7e-08	33.4	0.2	1.3	1	0	0	1	1	1	1	LSM	domain
Gemin6	PF06372.12	gi|296243012|ref|YP_003650499.1|	-	0.00089	18.8	0.0	0.0017	17.9	0.0	1.5	1	1	0	1	1	1	1	Gemin6	protein
LSM14	PF12701.7	gi|296243012|ref|YP_003650499.1|	-	0.054	13.6	0.0	0.11	12.6	0.0	1.5	1	1	0	1	1	1	0	Scd6-like	Sm	domain
SM-ATX	PF14438.6	gi|296243012|ref|YP_003650499.1|	-	0.067	13.3	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	Ataxin	2	SM	domain
RNA_pol_RpbG	PF16992.5	gi|296243013|ref|YP_003650500.1|	-	1.8e-15	57.0	0.0	2.2e-15	56.7	0.0	1.0	1	0	0	1	1	1	1	DNA-directed	RNA	polymerase,	subunit	G
DUF1251	PF06856.11	gi|296243013|ref|YP_003650500.1|	-	0.13	12.0	0.1	0.18	11.5	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1251)
DUF87	PF01935.17	gi|296243015|ref|YP_003650502.1|	-	2.4e-21	76.9	0.0	3.3e-21	76.4	0.0	1.2	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|296243015|ref|YP_003650502.1|	-	2.3e-12	46.3	0.0	9.3e-10	37.7	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.9	gi|296243015|ref|YP_003650502.1|	-	2.9e-06	26.4	0.0	5.7e-06	25.5	0.0	1.4	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
IPT	PF01745.16	gi|296243015|ref|YP_003650502.1|	-	0.00045	19.7	0.0	0.00083	18.8	0.0	1.4	1	0	0	1	1	1	1	Isopentenyl	transferase
ResIII	PF04851.15	gi|296243015|ref|YP_003650502.1|	-	0.00084	19.4	0.0	0.0015	18.6	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_10	PF12846.7	gi|296243015|ref|YP_003650502.1|	-	0.0028	16.6	0.0	0.0062	15.5	0.0	1.5	2	0	0	2	2	2	1	AAA-like	domain
AAA_22	PF13401.6	gi|296243015|ref|YP_003650502.1|	-	0.003	17.8	0.1	0.13	12.6	0.1	2.3	2	0	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|296243015|ref|YP_003650502.1|	-	0.027	14.2	0.0	0.063	13.0	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_25	PF13481.6	gi|296243015|ref|YP_003650502.1|	-	0.031	13.9	0.0	0.05	13.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|296243015|ref|YP_003650502.1|	-	0.043	13.2	0.0	0.071	12.5	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_7	PF12775.7	gi|296243015|ref|YP_003650502.1|	-	0.058	12.9	0.0	0.095	12.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|296243015|ref|YP_003650502.1|	-	0.075	13.5	0.0	0.83	10.1	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|296243015|ref|YP_003650502.1|	-	0.088	13.1	0.0	0.2	11.9	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
PhoH	PF02562.16	gi|296243015|ref|YP_003650502.1|	-	0.17	11.3	0.0	0.9	9.0	0.0	1.9	2	0	0	2	2	2	0	PhoH-like	protein
TraG-D_C	PF12696.7	gi|296243015|ref|YP_003650502.1|	-	0.18	11.8	0.0	0.34	10.9	0.0	1.4	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
Cpn60_TCP1	PF00118.24	gi|296243016|ref|YP_003650503.1|	-	8.4e-177	588.7	12.9	9.7e-177	588.5	12.9	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Spb1_C	PF07780.12	gi|296243016|ref|YP_003650503.1|	-	0.05	13.2	0.2	0.1	12.2	0.2	1.6	1	0	0	1	1	1	0	Spb1	C-terminal	domain
Telomere_res	PF16684.5	gi|296243016|ref|YP_003650503.1|	-	0.47	9.9	3.0	0.23	10.9	0.6	1.8	2	1	0	2	2	2	0	Telomere	resolvase
Nfu_N	PF08712.11	gi|296243017|ref|YP_003650504.1|	-	0.067	13.2	0.0	0.097	12.7	0.0	1.3	1	0	0	1	1	1	0	Scaffold	protein	Nfu/NifU	N	terminal
N6_N4_Mtase	PF01555.18	gi|296243018|ref|YP_003650505.1|	-	3.1e-26	92.5	0.0	2.4e-15	56.9	0.0	2.1	2	0	0	2	2	2	2	DNA	methylase
UPF0020	PF01170.18	gi|296243018|ref|YP_003650505.1|	-	1.3e-08	34.8	0.1	1.1e-06	28.4	0.1	2.4	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_11	PF08241.12	gi|296243018|ref|YP_003650505.1|	-	6.5e-05	23.5	0.0	0.001	19.7	0.0	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296243018|ref|YP_003650505.1|	-	0.011	16.4	0.0	0.67	10.7	0.0	2.5	2	1	0	2	2	2	0	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|296243018|ref|YP_003650505.1|	-	0.03	14.0	0.0	0.062	12.9	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
baeRF_family3	PF18845.1	gi|296243018|ref|YP_003650505.1|	-	0.089	13.1	0.0	0.15	12.4	0.0	1.2	1	0	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	3
TFIIE_alpha	PF02002.17	gi|296243019|ref|YP_003650506.1|	-	3.6e-08	33.2	1.0	3.6e-08	33.2	1.0	1.8	2	0	0	2	2	2	1	TFIIE	alpha	subunit
HypA	PF01155.19	gi|296243019|ref|YP_003650506.1|	-	0.011	15.7	0.0	0.016	15.2	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
MerR-DNA-bind	PF09278.11	gi|296243019|ref|YP_003650506.1|	-	0.028	14.9	1.3	0.034	14.7	0.1	1.7	2	0	0	2	2	2	0	MerR,	DNA	binding
Lar_restr_allev	PF14354.6	gi|296243019|ref|YP_003650506.1|	-	0.049	14.0	0.2	0.13	12.7	0.1	1.8	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
Rad50_zn_hook	PF04423.14	gi|296243019|ref|YP_003650506.1|	-	5.4	6.9	8.9	15	5.6	0.4	2.8	2	1	0	2	2	2	0	Rad50	zinc	hook	motif
DNA_methylase	PF00145.17	gi|296243020|ref|YP_003650507.1|	-	4.9e-49	167.5	0.0	6.2e-32	111.3	0.0	2.0	1	1	1	2	2	2	2	C-5	cytosine-specific	DNA	methylase
Methyltransf_15	PF09445.10	gi|296243020|ref|YP_003650507.1|	-	0.02	14.5	0.0	0.035	13.7	0.0	1.4	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
DUF2122	PF09895.9	gi|296243021|ref|YP_003650508.1|	-	1.1e-29	102.9	0.1	1.5e-29	102.5	0.1	1.2	1	0	0	1	1	1	1	RecB-family	nuclease	(DUF2122)
Aldo_ket_red	PF00248.21	gi|296243022|ref|YP_003650509.1|	-	3e-72	243.3	0.0	3.7e-72	243.0	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
PP-binding	PF00550.25	gi|296243022|ref|YP_003650509.1|	-	0.12	12.7	0.0	0.32	11.4	0.0	1.7	1	0	0	1	1	1	0	Phosphopantetheine	attachment	site
Pyr_redox_2	PF07992.14	gi|296243023|ref|YP_003650510.1|	-	1.2e-48	165.9	1.1	1.4e-48	165.7	1.1	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|296243023|ref|YP_003650510.1|	-	3e-24	85.8	0.2	5.5e-20	71.8	0.0	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|296243023|ref|YP_003650510.1|	-	2.2e-16	60.2	2.6	4.6e-12	46.3	0.3	3.2	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|296243023|ref|YP_003650510.1|	-	2.6e-12	46.8	2.8	6.5e-08	32.3	0.0	3.4	3	1	1	4	4	4	3	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|296243023|ref|YP_003650510.1|	-	1.4e-10	40.8	4.9	4.8e-05	22.6	0.3	3.5	2	1	2	4	4	4	3	FAD	binding	domain
GIDA	PF01134.22	gi|296243023|ref|YP_003650510.1|	-	9e-09	34.9	6.0	1.1e-05	24.7	0.2	3.4	4	0	0	4	4	4	2	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|296243023|ref|YP_003650510.1|	-	1.2e-08	34.1	0.5	0.0014	17.4	0.0	3.2	3	0	0	3	3	3	3	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|296243023|ref|YP_003650510.1|	-	5.6e-07	29.7	1.5	0.00059	20.0	0.1	2.4	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|296243023|ref|YP_003650510.1|	-	5.8e-06	25.8	2.1	0.00081	18.7	0.2	2.6	3	0	0	3	3	3	2	FAD	binding	domain
Thi4	PF01946.17	gi|296243023|ref|YP_003650510.1|	-	1.8e-05	24.1	0.8	0.058	12.6	0.1	2.4	2	0	0	2	2	2	2	Thi4	family
DAO	PF01266.24	gi|296243023|ref|YP_003650510.1|	-	0.00016	21.4	6.1	0.074	12.6	0.6	3.2	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|296243023|ref|YP_003650510.1|	-	0.00087	18.2	1.6	0.3	9.9	0.2	2.3	2	0	0	2	2	2	2	Tryptophan	halogenase
NAD_binding_7	PF13241.6	gi|296243023|ref|YP_003650510.1|	-	0.0029	18.0	0.4	0.28	11.6	0.1	2.5	2	0	0	2	2	2	1	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|296243023|ref|YP_003650510.1|	-	0.015	14.6	0.7	3.5	6.9	0.1	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.12	gi|296243023|ref|YP_003650510.1|	-	0.022	13.8	0.4	1.4	7.9	0.1	2.3	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.6	gi|296243023|ref|YP_003650510.1|	-	0.033	14.2	0.5	16	5.5	0.0	3.1	3	0	0	3	3	3	0	FAD-NAD(P)-binding
MCRA	PF06100.11	gi|296243023|ref|YP_003650510.1|	-	2	7.1	2.8	16	4.1	0.4	2.1	2	0	0	2	2	2	0	MCRA	family
AdoHcyase	PF05221.17	gi|296243024|ref|YP_003650511.1|	-	7e-66	222.4	0.0	4.6e-37	127.8	0.0	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|296243024|ref|YP_003650511.1|	-	1.2e-54	184.7	0.1	2e-54	184.0	0.1	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|296243024|ref|YP_003650511.1|	-	6.5e-07	28.9	0.2	1.2e-06	28.0	0.2	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|296243024|ref|YP_003650511.1|	-	4.8e-06	26.2	0.1	9.9e-06	25.2	0.1	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
zf-RNPHF	PF08080.12	gi|296243024|ref|YP_003650511.1|	-	0.092	12.7	0.2	0.18	11.8	0.2	1.4	1	0	0	1	1	1	0	RNPHF	zinc	finger
DNA_pol_B	PF00136.21	gi|296243026|ref|YP_003650513.1|	-	1.1e-70	238.7	0.0	1.6e-70	238.1	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|296243026|ref|YP_003650513.1|	-	1.6e-42	145.9	0.2	1.1e-24	87.3	0.0	2.3	2	0	0	2	2	2	2	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.6	gi|296243026|ref|YP_003650513.1|	-	1.2e-10	41.6	0.0	3e-10	40.3	0.0	1.7	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_B_2	PF03175.13	gi|296243026|ref|YP_003650513.1|	-	0.012	14.6	0.0	0.027	13.4	0.0	1.5	1	0	0	1	1	1	0	DNA	polymerase	type	B,	organellar	and	viral
DNA_pol_B_exo2	PF10108.9	gi|296243026|ref|YP_003650513.1|	-	0.032	13.9	0.0	0.06	13.0	0.0	1.4	1	0	0	1	1	1	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
eRF1_1	PF03463.15	gi|296243027|ref|YP_003650514.1|	-	1.3e-26	93.1	0.0	2.8e-26	92.0	0.0	1.5	2	0	0	2	2	2	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|296243027|ref|YP_003650514.1|	-	5.5e-13	49.4	0.0	1.3e-12	48.2	0.0	1.6	1	0	0	1	1	1	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|296243027|ref|YP_003650514.1|	-	1.6e-09	38.2	0.0	4.8e-09	36.6	0.0	1.8	2	0	0	2	2	2	1	eRF1	domain	2
baeRF_family10	PF18854.1	gi|296243027|ref|YP_003650514.1|	-	0.011	16.0	0.1	0.16	12.2	0.0	2.6	1	1	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
baeRF_family2	PF18844.1	gi|296243027|ref|YP_003650514.1|	-	0.13	12.3	0.8	0.27	11.3	0.0	1.9	3	0	0	3	3	3	0	Bacterial	archaeo-eukaryotic	release	factor	family	2
NTP_transf_2	PF01909.23	gi|296243028|ref|YP_003650515.1|	-	2.3e-06	27.8	0.1	4.2e-06	27.0	0.1	1.7	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|296243028|ref|YP_003650515.1|	-	0.00017	21.6	0.0	0.00034	20.6	0.0	1.4	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
HTH_24	PF13412.6	gi|296243028|ref|YP_003650515.1|	-	0.065	12.8	0.5	0.16	11.6	0.1	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|296243028|ref|YP_003650515.1|	-	0.077	12.8	0.3	0.077	12.8	0.3	1.9	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
IMPa_helical	PF18642.1	gi|296243028|ref|YP_003650515.1|	-	0.22	12.0	0.0	0.39	11.1	0.0	1.3	1	0	0	1	1	1	0	Immunomodulating	metalloprotease	helical	domain
Peptidase_M50	PF02163.22	gi|296243029|ref|YP_003650516.1|	-	8.4e-11	41.6	10.6	1.5e-09	37.5	10.6	2.5	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_6	PF17820.1	gi|296243029|ref|YP_003650516.1|	-	1.4e-07	31.2	0.0	2.5e-07	30.4	0.0	1.5	1	0	0	1	1	1	1	PDZ	domain
PDZ_2	PF13180.6	gi|296243029|ref|YP_003650516.1|	-	0.00019	21.7	0.0	0.00039	20.7	0.0	1.5	1	0	0	1	1	1	1	PDZ	domain
PDZ	PF00595.24	gi|296243029|ref|YP_003650516.1|	-	0.00039	20.7	0.0	0.00089	19.6	0.0	1.6	1	0	0	1	1	1	1	PDZ	domain
DUF2759	PF10958.8	gi|296243029|ref|YP_003650516.1|	-	0.17	11.6	5.0	1.2	8.9	0.2	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2759)
Bestrophin	PF01062.21	gi|296243029|ref|YP_003650516.1|	-	0.5	9.7	4.3	0.15	11.4	0.9	1.7	2	0	0	2	2	2	0	Bestrophin,	RFP-TM,	chloride	channel
Glyco_hydro_57	PF03065.15	gi|296243030|ref|YP_003650517.1|	-	9.4e-83	278.1	0.2	1.3e-82	277.6	0.2	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
Glucodextran_C	PF09985.9	gi|296243030|ref|YP_003650517.1|	-	5e-78	261.7	0.9	1.1e-77	260.5	0.9	1.6	1	0	0	1	1	1	1	C-terminal	binding-module,	SLH-like,	of	glucodextranase
DUF4366	PF14283.6	gi|296243030|ref|YP_003650517.1|	-	0.018	15.1	0.1	0.029	14.4	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4366)
MGC-24	PF05283.11	gi|296243030|ref|YP_003650517.1|	-	0.018	15.5	6.5	0.033	14.6	6.5	1.3	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
TMEM154	PF15102.6	gi|296243030|ref|YP_003650517.1|	-	0.02	14.8	5.7	0.047	13.6	5.7	1.5	1	0	0	1	1	1	0	TMEM154	protein	family
ABC_tran	PF00005.27	gi|296243031|ref|YP_003650518.1|	-	9.4e-33	113.6	0.0	1.4e-32	113.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|296243031|ref|YP_003650518.1|	-	8.8e-08	32.9	0.0	5.1e-06	27.2	0.0	2.8	1	1	0	1	1	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|296243031|ref|YP_003650518.1|	-	1.5e-07	31.5	0.0	0.0039	17.1	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE_2	PF08402.10	gi|296243031|ref|YP_003650518.1|	-	3.4e-07	30.3	0.0	8.6e-07	29.0	0.0	1.8	1	0	0	1	1	1	1	TOBE	domain
TOBE	PF03459.17	gi|296243031|ref|YP_003650518.1|	-	8.7e-06	25.9	0.0	3.5e-05	24.0	0.0	2.1	2	0	0	2	2	2	1	TOBE	domain
SMC_N	PF02463.19	gi|296243031|ref|YP_003650518.1|	-	0.001	18.6	0.0	0.025	14.0	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.15	gi|296243031|ref|YP_003650518.1|	-	0.014	15.4	0.0	0.028	14.3	0.0	1.6	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|296243031|ref|YP_003650518.1|	-	0.026	14.9	0.0	0.05	14.0	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|296243031|ref|YP_003650518.1|	-	0.033	14.6	0.1	0.081	13.4	0.1	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|296243031|ref|YP_003650518.1|	-	0.038	14.5	0.0	0.097	13.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|296243031|ref|YP_003650518.1|	-	0.043	14.1	0.1	0.11	12.8	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|296243031|ref|YP_003650518.1|	-	0.13	12.3	0.0	0.22	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|296243031|ref|YP_003650518.1|	-	0.22	12.0	0.0	0.45	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|296243032|ref|YP_003650519.1|	-	3.7e-14	52.9	18.8	3.7e-14	52.9	18.8	2.3	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|296243033|ref|YP_003650520.1|	-	4.5e-18	65.7	12.2	4.5e-18	65.7	12.2	2.1	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
TM_PBP2_N	PF16296.5	gi|296243033|ref|YP_003650520.1|	-	0.033	14.3	0.0	0.1	12.7	0.0	1.8	1	0	0	1	1	1	0	N-terminal	of	TM	subunit	in	PBP-dependent	ABC	transporters
Sec7_N	PF12783.7	gi|296243033|ref|YP_003650520.1|	-	0.055	13.4	0.1	0.11	12.4	0.1	1.4	1	0	0	1	1	1	0	Guanine	nucleotide	exchange	factor	in	Golgi	transport	N-terminal
DPM2	PF07297.12	gi|296243033|ref|YP_003650520.1|	-	0.33	11.3	6.2	1.1	9.6	0.7	3.0	2	0	0	2	2	2	0	Dolichol	phosphate-mannose	biosynthesis	regulatory	protein	(DPM2)
ApoO	PF09769.9	gi|296243033|ref|YP_003650520.1|	-	2	8.4	5.3	0.42	10.6	0.2	2.5	3	0	0	3	3	3	0	Apolipoprotein	O
ABC_tran	PF00005.27	gi|296243034|ref|YP_003650521.1|	-	1.7e-18	67.5	0.0	2.2e-18	67.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|296243034|ref|YP_003650521.1|	-	8.7e-11	41.7	0.0	1.4e-10	41.0	0.0	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|296243034|ref|YP_003650521.1|	-	5.7e-09	36.2	0.1	0.0031	17.4	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|296243034|ref|YP_003650521.1|	-	0.00075	19.2	0.0	0.0015	18.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|296243034|ref|YP_003650521.1|	-	0.00076	19.3	0.0	0.0082	15.9	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|296243034|ref|YP_003650521.1|	-	0.0034	17.9	0.2	0.0064	17.0	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|296243034|ref|YP_003650521.1|	-	0.0066	16.4	0.0	0.0098	15.8	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_33	PF13671.6	gi|296243034|ref|YP_003650521.1|	-	0.0078	16.4	0.0	0.011	15.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|296243034|ref|YP_003650521.1|	-	0.014	15.0	0.0	0.024	14.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|296243034|ref|YP_003650521.1|	-	0.02	14.5	0.0	0.032	13.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|296243034|ref|YP_003650521.1|	-	0.026	14.5	0.0	1.7	8.6	0.0	2.7	1	1	2	3	3	3	0	NACHT	domain
AAA	PF00004.29	gi|296243034|ref|YP_003650521.1|	-	0.027	14.9	0.1	0.14	12.5	0.1	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|296243034|ref|YP_003650521.1|	-	0.039	13.7	0.0	0.11	12.2	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_13	PF13166.6	gi|296243034|ref|YP_003650521.1|	-	0.12	10.9	0.1	2.5	6.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
UPF0051	PF01458.17	gi|296243035|ref|YP_003650522.1|	-	3.8e-64	216.4	0.1	4.7e-64	216.1	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.17	gi|296243036|ref|YP_003650523.1|	-	1.2e-10	41.5	0.0	2.6e-10	40.4	0.0	1.4	1	1	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
E1-E2_ATPase	PF00122.20	gi|296243037|ref|YP_003650524.1|	-	5.8e-58	195.4	1.8	5.8e-58	195.4	1.8	2.6	3	0	0	3	3	3	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|296243037|ref|YP_003650524.1|	-	3.9e-44	150.6	3.1	3.9e-44	150.6	3.1	2.0	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|296243037|ref|YP_003650524.1|	-	1.5e-23	84.2	8.4	5.4e-23	82.4	5.2	3.0	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|296243037|ref|YP_003650524.1|	-	9.9e-20	70.0	0.1	2e-18	65.8	0.0	3.0	4	0	0	4	4	4	1	Cation	transporter/ATPase,	N-terminus
Cation_ATPase	PF13246.6	gi|296243037|ref|YP_003650524.1|	-	8.6e-12	45.0	0.0	1.9e-11	43.9	0.0	1.5	1	0	0	1	1	1	1	Cation	transport	ATPase	(P-type)
Hydrolase_3	PF08282.12	gi|296243037|ref|YP_003650524.1|	-	7.2e-06	25.9	0.6	0.00071	19.4	0.3	2.4	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|296243037|ref|YP_003650524.1|	-	0.0005	20.5	0.2	0.0017	18.8	0.1	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
FmrO	PF07091.11	gi|296243037|ref|YP_003650524.1|	-	0.034	13.7	0.1	0.098	12.2	0.1	1.7	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
DUF401	PF04165.12	gi|296243038|ref|YP_003650525.1|	-	1.6e-43	149.5	28.9	1.9e-43	149.3	28.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF401)
PALP	PF00291.25	gi|296243040|ref|YP_003650527.1|	-	7.4e-48	163.4	0.0	1.3e-47	162.7	0.0	1.3	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Caps_assemb_Wzi	PF14052.6	gi|296243041|ref|YP_003650528.1|	-	0.0081	15.3	0.0	0.013	14.6	0.0	1.2	1	0	0	1	1	1	1	Capsule	assembly	protein	Wzi
Tmemb_170	PF10190.9	gi|296243041|ref|YP_003650528.1|	-	0.23	11.8	9.8	1.7	9.0	0.9	3.0	3	0	0	3	3	3	0	Putative	transmembrane	protein	170
PMT_2	PF13231.6	gi|296243042|ref|YP_003650529.1|	-	5.1e-08	33.3	18.3	5.1e-08	33.3	18.3	2.5	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|296243042|ref|YP_003650529.1|	-	3.2e-07	30.2	30.9	3e-06	27.0	25.8	3.3	2	1	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Mannosyl_trans4	PF15971.5	gi|296243042|ref|YP_003650529.1|	-	0.00084	19.2	6.7	0.0016	18.3	6.7	1.5	1	0	0	1	1	1	1	DolP-mannose	mannosyltransferase
RHH_1	PF01402.21	gi|296243043|ref|YP_003650530.1|	-	7e-10	38.5	0.1	7.9e-10	38.3	0.1	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|296243043|ref|YP_003650530.1|	-	3.7e-05	23.9	0.0	4e-05	23.8	0.0	1.0	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
ParD_antitoxin	PF03693.14	gi|296243043|ref|YP_003650530.1|	-	0.00021	21.7	0.0	0.00021	21.7	0.0	1.1	1	0	0	1	1	1	1	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
VapB_antitoxin	PF09957.9	gi|296243043|ref|YP_003650530.1|	-	0.0054	16.6	0.0	0.0068	16.3	0.0	1.2	1	0	0	1	1	1	1	Bacterial	antitoxin	of	type	II	TA	system,	VapB
RHH_3	PF12651.7	gi|296243043|ref|YP_003650530.1|	-	0.11	12.5	0.4	3.4	7.7	0.2	2.0	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
EVE	PF01878.18	gi|296243044|ref|YP_003650531.1|	-	0.00093	19.2	0.1	0.0014	18.7	0.1	1.6	1	1	0	1	1	1	1	EVE	domain
GCD14	PF08704.10	gi|296243045|ref|YP_003650532.1|	-	1.9e-30	106.3	0.0	3.5e-28	98.9	0.0	2.0	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.6	gi|296243045|ref|YP_003650532.1|	-	3.9e-10	39.7	0.0	6.1e-10	39.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296243045|ref|YP_003650532.1|	-	1.8e-06	28.6	0.0	4.9e-06	27.2	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|296243045|ref|YP_003650532.1|	-	1.4e-05	26.1	0.0	3.6e-05	24.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|296243045|ref|YP_003650532.1|	-	1.9e-05	24.5	0.1	3.3e-05	23.7	0.1	1.4	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_11	PF08241.12	gi|296243045|ref|YP_003650532.1|	-	5e-05	23.9	0.0	0.00016	22.3	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
GCD14_N	PF14801.6	gi|296243045|ref|YP_003650532.1|	-	9.2e-05	22.2	0.0	0.00018	21.3	0.0	1.5	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit	N-term
Ubie_methyltran	PF01209.18	gi|296243045|ref|YP_003650532.1|	-	0.00053	19.4	0.0	0.0013	18.1	0.0	1.7	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|296243045|ref|YP_003650532.1|	-	0.0053	16.3	0.0	0.0084	15.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
rRNA_methylase	PF06962.12	gi|296243045|ref|YP_003650532.1|	-	0.013	15.4	0.0	0.038	14.0	0.0	1.7	2	0	0	2	2	2	0	Putative	rRNA	methylase
Methyltransf_12	PF08242.12	gi|296243045|ref|YP_003650532.1|	-	0.027	15.2	0.0	0.21	12.3	0.0	2.3	2	1	0	2	2	2	0	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|296243045|ref|YP_003650532.1|	-	0.16	11.9	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|296243045|ref|YP_003650532.1|	-	0.2	11.0	0.0	0.31	10.4	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DOT1	PF08123.13	gi|296243046|ref|YP_003650533.1|	-	5.5e-07	29.3	0.0	9.1e-06	25.3	0.0	2.0	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
Methyltransf_31	PF13847.6	gi|296243046|ref|YP_003650533.1|	-	3.2e-05	23.7	0.0	4e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|296243046|ref|YP_003650533.1|	-	3.5e-05	24.4	0.0	4.7e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|296243046|ref|YP_003650533.1|	-	4e-05	23.0	0.0	4.8e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|296243046|ref|YP_003650533.1|	-	0.00025	21.0	0.0	0.00039	20.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|296243046|ref|YP_003650533.1|	-	0.00035	20.1	0.0	0.00045	19.7	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
PrmA	PF06325.13	gi|296243046|ref|YP_003650533.1|	-	0.00095	18.6	0.0	0.0012	18.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MetW	PF07021.12	gi|296243046|ref|YP_003650533.1|	-	0.0031	17.1	0.0	0.0038	16.8	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_2	PF00891.18	gi|296243046|ref|YP_003650533.1|	-	0.0032	16.8	0.0	0.004	16.5	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
Methyltransf_15	PF09445.10	gi|296243046|ref|YP_003650533.1|	-	0.0049	16.5	0.0	0.0062	16.1	0.0	1.3	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
UPF0020	PF01170.18	gi|296243046|ref|YP_003650533.1|	-	0.0078	15.9	0.1	0.15	11.7	0.1	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.14	gi|296243046|ref|YP_003650533.1|	-	0.0097	15.5	0.0	0.013	15.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|296243046|ref|YP_003650533.1|	-	0.015	15.9	0.0	0.021	15.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.20	gi|296243046|ref|YP_003650533.1|	-	0.07	12.2	0.0	0.083	11.9	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_23	PF13489.6	gi|296243046|ref|YP_003650533.1|	-	0.14	12.0	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|296243046|ref|YP_003650533.1|	-	0.15	12.8	0.0	0.22	12.3	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
PET122	PF05476.11	gi|296243047|ref|YP_003650534.1|	-	0.055	12.8	0.1	0.055	12.8	0.1	1.1	1	0	0	1	1	1	0	PET122
DXP_redisom_C	PF08436.12	gi|296243047|ref|YP_003650534.1|	-	0.12	12.5	0.1	0.18	12.0	0.1	1.3	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase	C-terminal	domain
Methyltrn_RNA_2	PF04013.12	gi|296243048|ref|YP_003650535.1|	-	1.1e-06	28.5	0.0	1.3e-06	28.2	0.0	1.1	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
Ribosomal_S26e	PF01283.19	gi|296243049|ref|YP_003650536.1|	-	2.5e-25	89.0	3.3	2.9e-25	88.8	3.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S26e
zf-RING_7	PF02591.15	gi|296243049|ref|YP_003650536.1|	-	0.00074	19.6	1.1	0.02	15.1	0.5	2.3	2	0	0	2	2	2	1	C4-type	zinc	ribbon	domain
Sgf11	PF08209.11	gi|296243049|ref|YP_003650536.1|	-	0.099	12.2	0.3	0.099	12.2	0.3	1.9	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
KOW	PF00467.29	gi|296243049|ref|YP_003650536.1|	-	0.25	11.3	0.3	0.25	11.3	0.3	1.8	2	1	0	2	2	2	0	KOW	motif
WCCH	PF03716.14	gi|296243049|ref|YP_003650536.1|	-	6.8	6.5	8.3	13	5.6	0.2	3.1	3	0	0	3	3	3	0	WCCH	motif
DNA_pol_B	PF00136.21	gi|296243050|ref|YP_003650537.1|	-	5.1e-46	157.3	0.0	8.6e-46	156.6	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|296243050|ref|YP_003650537.1|	-	9.6e-26	90.7	0.1	2e-25	89.6	0.1	1.5	1	0	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.6	gi|296243050|ref|YP_003650537.1|	-	0.0012	18.9	0.0	0.0081	16.2	0.0	2.3	2	0	0	2	2	2	1	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.9	gi|296243050|ref|YP_003650537.1|	-	0.0089	15.7	0.0	0.017	14.8	0.0	1.4	1	0	0	1	1	1	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
DNA_pol_B_2	PF03175.13	gi|296243050|ref|YP_003650537.1|	-	0.039	12.8	0.0	0.12	11.2	0.0	1.8	2	0	0	2	2	2	0	DNA	polymerase	type	B,	organellar	and	viral
ACT_6	PF13740.6	gi|296243050|ref|YP_003650537.1|	-	0.15	12.1	0.0	0.57	10.2	0.0	2.0	2	0	0	2	2	2	0	ACT	domain
NAC	PF01849.18	gi|296243051|ref|YP_003650538.1|	-	6.5e-14	51.6	1.6	3e-13	49.5	0.5	2.0	2	0	0	2	2	2	1	NAC	domain
HOIP-UBA	PF16678.5	gi|296243051|ref|YP_003650538.1|	-	0.019	15.0	0.1	0.047	13.7	0.1	1.7	2	1	0	2	2	2	0	HOIP	UBA	domain	pair
PTS_IIB	PF02302.17	gi|296243051|ref|YP_003650538.1|	-	0.027	15.2	0.6	0.15	12.8	0.1	2.0	1	1	1	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
SurA_N	PF09312.11	gi|296243051|ref|YP_003650538.1|	-	0.028	14.5	0.1	2.4	8.3	0.0	2.2	2	0	0	2	2	2	0	SurA	N-terminal	domain
Rep_trans	PF02486.19	gi|296243051|ref|YP_003650538.1|	-	0.035	13.8	0.0	0.042	13.6	0.0	1.1	1	0	0	1	1	1	0	Replication	initiation	factor
UBA_4	PF14555.6	gi|296243051|ref|YP_003650538.1|	-	0.059	13.2	0.0	0.09	12.6	0.0	1.4	1	0	0	1	1	1	0	UBA-like	domain
DUF3201	PF11447.8	gi|296243051|ref|YP_003650538.1|	-	0.062	12.8	0.1	0.57	9.7	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3201)
EF-hand_10	PF14788.6	gi|296243051|ref|YP_003650538.1|	-	0.085	12.7	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	EF	hand
DUF4982	PF16355.5	gi|296243051|ref|YP_003650538.1|	-	0.15	12.1	0.2	0.53	10.3	0.2	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4982)
Beta-Casp	PF10996.8	gi|296243052|ref|YP_003650539.1|	-	9.9e-20	70.9	0.0	1.8e-19	70.0	0.0	1.4	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B_6	PF16661.5	gi|296243052|ref|YP_003650539.1|	-	1.4e-14	54.0	0.0	2.4e-14	53.2	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|296243052|ref|YP_003650539.1|	-	1.4e-11	44.8	0.4	3.3e-11	43.6	0.4	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.12	gi|296243052|ref|YP_003650539.1|	-	3e-11	43.1	0.0	5.5e-11	42.2	0.0	1.4	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_2	PF12706.7	gi|296243052|ref|YP_003650539.1|	-	5e-10	39.2	0.0	8.3e-10	38.5	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|296243052|ref|YP_003650539.1|	-	0.0001	22.2	0.0	0.00032	20.6	0.0	1.8	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Glyco_hydro_42M	PF08532.10	gi|296243052|ref|YP_003650539.1|	-	0.14	11.6	0.1	0.38	10.2	0.0	1.6	2	0	0	2	2	2	0	Beta-galactosidase	trimerisation	domain
SgrR_N	PF12793.7	gi|296243053|ref|YP_003650540.1|	-	0.00049	20.3	0.0	0.00065	19.9	0.0	1.1	1	0	0	1	1	1	1	Sugar	transport-related	sRNA	regulator	N-term
TrmB	PF01978.19	gi|296243053|ref|YP_003650540.1|	-	0.00095	19.0	0.1	0.0013	18.6	0.1	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.12	gi|296243053|ref|YP_003650540.1|	-	0.013	15.3	0.0	0.018	14.8	0.0	1.2	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|296243053|ref|YP_003650540.1|	-	0.013	15.4	0.0	0.016	15.2	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Hema_stalk	PF08720.10	gi|296243053|ref|YP_003650540.1|	-	0.034	13.9	0.0	0.05	13.3	0.0	1.3	1	1	0	1	1	1	0	Influenza	C	hemagglutinin	stalk
MarR	PF01047.22	gi|296243053|ref|YP_003650540.1|	-	0.093	12.7	0.0	0.16	11.9	0.0	1.4	1	1	0	1	1	1	0	MarR	family
Fe_dep_repress	PF01325.19	gi|296243053|ref|YP_003650540.1|	-	0.1	12.8	0.0	0.14	12.3	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
GTP_EFTU	PF00009.27	gi|296243054|ref|YP_003650541.1|	-	3.4e-60	202.9	0.2	8e-60	201.7	0.1	1.7	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.18	gi|296243054|ref|YP_003650541.1|	-	1e-30	106.0	0.0	7.8e-30	103.1	0.0	2.6	2	1	1	3	3	3	1	Elongation	factor	G,	domain	IV
EFG_C	PF00679.24	gi|296243054|ref|YP_003650541.1|	-	6.1e-22	77.5	0.0	2.8e-21	75.3	0.0	2.2	2	0	0	2	2	2	1	Elongation	factor	G	C-terminus
EFG_II	PF14492.6	gi|296243054|ref|YP_003650541.1|	-	1.9e-20	72.7	0.1	3.6e-20	71.8	0.1	1.5	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.25	gi|296243054|ref|YP_003650541.1|	-	3.6e-12	46.5	0.1	9.7e-12	45.1	0.1	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|296243054|ref|YP_003650541.1|	-	3.7e-06	27.0	0.1	8.7e-06	25.8	0.1	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
RF3_C	PF16658.5	gi|296243054|ref|YP_003650541.1|	-	0.016	15.0	0.2	0.064	13.1	0.0	2.1	2	0	0	2	2	2	0	Class	II	release	factor	RF3,	C-terminal	domain
HIGH_NTase1_ass	PF16581.5	gi|296243054|ref|YP_003650541.1|	-	0.035	14.1	0.0	0.085	12.8	0.0	1.6	1	0	0	1	1	1	0	Cytidyltransferase-related	C-terminal	region
Ras	PF00071.22	gi|296243054|ref|YP_003650541.1|	-	0.05	13.2	0.0	0.099	12.2	0.0	1.4	1	0	0	1	1	1	0	Ras	family
SRPRB	PF09439.10	gi|296243054|ref|YP_003650541.1|	-	0.15	11.5	0.0	0.29	10.5	0.0	1.5	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
RsgA_GTPase	PF03193.16	gi|296243054|ref|YP_003650541.1|	-	0.19	11.6	1.5	0.55	10.1	0.2	2.2	2	1	0	2	2	2	0	RsgA	GTPase
Prefoldin_2	PF01920.20	gi|296243056|ref|YP_003650543.1|	-	1.2e-18	67.0	12.8	1.3e-18	66.8	12.8	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
Prefoldin	PF02996.17	gi|296243056|ref|YP_003650543.1|	-	0.0054	16.6	9.1	0.21	11.5	2.8	2.2	1	1	1	2	2	2	2	Prefoldin	subunit
JIP_LZII	PF16471.5	gi|296243056|ref|YP_003650543.1|	-	0.094	12.9	11.9	1.8	8.8	0.0	3.0	1	1	1	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
ZapD	PF07072.11	gi|296243056|ref|YP_003650543.1|	-	0.14	11.9	3.8	0.13	12.0	2.1	1.7	1	1	1	2	2	2	0	Cell	division	protein
RDM	PF11002.8	gi|296243056|ref|YP_003650543.1|	-	0.24	11.4	2.1	0.25	11.4	0.3	2.0	2	0	0	2	2	2	0	RFPL	defining	motif	(RDM)
DUF3287	PF11690.8	gi|296243056|ref|YP_003650543.1|	-	0.42	10.3	2.1	16	5.2	0.9	2.0	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3287)
Seryl_tRNA_N	PF02403.22	gi|296243056|ref|YP_003650543.1|	-	0.51	10.6	10.1	1.2	9.3	0.4	2.2	1	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
TMF_DNA_bd	PF12329.8	gi|296243056|ref|YP_003650543.1|	-	0.75	9.8	13.2	0.34	10.9	6.2	2.2	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
FlaC_arch	PF05377.11	gi|296243056|ref|YP_003650543.1|	-	0.79	10.2	7.5	1.4	9.3	0.8	2.5	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Nsp1_C	PF05064.13	gi|296243056|ref|YP_003650543.1|	-	0.91	9.4	11.1	3.7	7.4	1.5	2.1	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
FbpA	PF05833.11	gi|296243056|ref|YP_003650543.1|	-	1	8.0	8.9	0.077	11.7	0.6	2.0	1	1	1	2	2	2	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
TFA2_Winged_2	PF18121.1	gi|296243056|ref|YP_003650543.1|	-	2.1	8.1	5.9	0.46	10.2	0.8	2.4	2	1	1	3	3	3	0	TFA2	Winged	helix	domain	2
DUF4094	PF13334.6	gi|296243056|ref|YP_003650543.1|	-	2.2	8.7	4.8	0.98	9.9	1.1	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4094)
APG6_N	PF17675.1	gi|296243056|ref|YP_003650543.1|	-	4.2	7.9	12.2	4	8.0	1.9	2.0	1	1	1	2	2	2	0	Apg6	coiled-coil	region
bZIP_1	PF00170.21	gi|296243056|ref|YP_003650543.1|	-	6.6	6.9	12.9	1.4	9.1	6.5	2.4	3	0	0	3	3	3	0	bZIP	transcription	factor
Brix	PF04427.18	gi|296243057|ref|YP_003650544.1|	-	0.019	15.1	0.0	0.02	15.0	0.0	1.2	1	0	0	1	1	1	0	Brix	domain
DsrD	PF08679.11	gi|296243057|ref|YP_003650544.1|	-	0.14	12.4	0.0	0.48	10.7	0.0	1.8	2	0	0	2	2	2	0	Dissimilatory	sulfite	reductase	D	(DsrD)
Ribosomal_L37ae	PF01780.19	gi|296243058|ref|YP_003650545.1|	-	1.2e-32	111.8	3.5	1.3e-32	111.7	3.5	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|296243058|ref|YP_003650545.1|	-	4.1e-07	29.9	1.3	6.2e-07	29.3	1.3	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|296243058|ref|YP_003650545.1|	-	0.00017	21.4	0.3	0.00023	21.0	0.3	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.6	gi|296243058|ref|YP_003650545.1|	-	0.021	15.2	0.8	0.032	14.6	0.8	1.3	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Rep_fac-A_C	PF08646.10	gi|296243058|ref|YP_003650545.1|	-	0.024	14.4	0.1	0.029	14.1	0.1	1.1	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
zinc_ribbon_13	PF09855.9	gi|296243058|ref|YP_003650545.1|	-	0.062	13.5	0.4	3.2	8.0	0.0	2.1	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-H2C2_2	PF13465.6	gi|296243058|ref|YP_003650545.1|	-	0.069	13.6	1.3	0.14	12.6	0.2	1.9	2	0	0	2	2	2	0	Zinc-finger	double	domain
TF_Zn_Ribbon	PF08271.12	gi|296243058|ref|YP_003650545.1|	-	0.089	12.3	0.8	0.17	11.5	0.8	1.5	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf_CopZ	PF18423.1	gi|296243058|ref|YP_003650545.1|	-	0.089	12.8	0.8	0.44	10.5	0.2	2.1	2	0	0	2	2	2	0	Zinc	binding	domain
DUF4379	PF14311.6	gi|296243058|ref|YP_003650545.1|	-	0.12	12.8	2.9	0.43	11.0	0.7	2.1	2	0	0	2	2	2	0	Probable	Zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|296243058|ref|YP_003650545.1|	-	0.17	11.3	3.8	4.3	6.9	1.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
CpXC	PF14353.6	gi|296243058|ref|YP_003650545.1|	-	0.23	11.5	0.8	1.3	9.1	0.0	1.9	1	1	1	2	2	2	0	CpXC	protein
zf-ISL3	PF14690.6	gi|296243058|ref|YP_003650545.1|	-	0.37	11.5	5.5	0.64	10.7	0.5	2.4	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
A2L_zn_ribbon	PF08792.10	gi|296243058|ref|YP_003650545.1|	-	1.2	9.0	3.9	20	5.0	0.2	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Prim_Zn_Ribbon	PF08273.12	gi|296243058|ref|YP_003650545.1|	-	1.5	9.2	7.9	13	6.2	7.9	2.0	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
RNase_PH	PF01138.21	gi|296243059|ref|YP_003650546.1|	-	4.3e-26	92.0	0.0	4e-25	88.9	0.0	2.0	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|296243059|ref|YP_003650546.1|	-	1.4e-11	44.2	1.3	3.5e-11	43.0	1.0	1.8	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	2
RNase_PH	PF01138.21	gi|296243060|ref|YP_003650547.1|	-	2.2e-36	125.2	0.0	2.9e-36	124.9	0.0	1.1	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|296243060|ref|YP_003650547.1|	-	4.6e-14	52.2	0.2	9.3e-14	51.2	0.1	1.6	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	2
KH_6	PF15985.5	gi|296243061|ref|YP_003650548.1|	-	1.5e-09	38.0	0.1	2.7e-09	37.2	0.1	1.4	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|296243061|ref|YP_003650548.1|	-	3.5e-05	23.5	0.0	0.0001	22.0	0.0	1.9	1	0	0	1	1	1	1	KH	domain
KH_2	PF07650.17	gi|296243061|ref|YP_003650548.1|	-	0.0014	18.4	0.2	0.0037	17.0	0.2	1.8	1	0	0	1	1	1	1	KH	domain
KH_4	PF13083.6	gi|296243061|ref|YP_003650548.1|	-	0.083	12.8	0.0	0.21	11.5	0.0	1.8	1	0	0	1	1	1	0	KH	domain
SBDS	PF01172.18	gi|296243062|ref|YP_003650549.1|	-	1.1e-22	79.9	0.1	2e-22	79.0	0.1	1.5	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|296243062|ref|YP_003650549.1|	-	9.1e-20	70.8	1.6	1.3e-19	70.4	1.6	1.2	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
EFG_C	PF00679.24	gi|296243062|ref|YP_003650549.1|	-	0.0033	17.4	0.0	0.0068	16.4	0.0	1.5	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
DUF1949	PF09186.11	gi|296243062|ref|YP_003650549.1|	-	0.11	12.3	0.0	0.24	11.3	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1949)
Proteasome	PF00227.26	gi|296243063|ref|YP_003650550.1|	-	2.2e-53	180.6	0.1	3e-53	180.1	0.1	1.2	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|296243063|ref|YP_003650550.1|	-	1.1e-14	53.7	0.4	1.1e-14	53.7	0.4	3.0	3	1	0	3	3	3	1	Proteasome	subunit	A	N-terminal	signature
BNR_4	PF15892.5	gi|296243063|ref|YP_003650550.1|	-	0.13	11.6	0.0	0.18	11.1	0.0	1.2	1	0	0	1	1	1	0	BNR	repeat-containing	family	member
adh_short_C2	PF13561.6	gi|296243064|ref|YP_003650551.1|	-	7.2e-69	231.9	0.0	8.9e-69	231.6	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|296243064|ref|YP_003650551.1|	-	2.2e-50	170.8	0.1	4.5e-50	169.8	0.0	1.5	2	0	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.10	gi|296243064|ref|YP_003650551.1|	-	3.4e-08	33.6	0.0	5.7e-08	32.9	0.0	1.3	1	0	0	1	1	1	1	KR	domain
Zn_Tnp_IS1595	PF12760.7	gi|296243065|ref|YP_003650552.1|	-	9.8e-05	22.3	3.2	0.024	14.6	0.5	2.2	1	1	1	2	2	2	2	Transposase	zinc-ribbon	domain
Anti-TRAP	PF15777.5	gi|296243065|ref|YP_003650552.1|	-	0.0069	16.3	0.9	0.67	10.0	0.1	2.1	2	0	0	2	2	2	1	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DnaJ_CXXCXGXG	PF00684.19	gi|296243065|ref|YP_003650552.1|	-	0.0083	16.5	0.2	0.01	16.2	0.2	1.2	1	0	0	1	1	1	1	DnaJ	central	domain
Mu-like_Com	PF10122.9	gi|296243065|ref|YP_003650552.1|	-	0.017	14.5	1.4	0.98	8.9	0.1	2.1	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
DUF3268	PF11672.8	gi|296243065|ref|YP_003650552.1|	-	0.033	14.5	0.4	0.035	14.4	0.4	1.1	1	0	0	1	1	1	0	zinc-finger-containing	domain
Lar_restr_allev	PF14354.6	gi|296243065|ref|YP_003650552.1|	-	0.048	14.1	3.3	0.19	12.1	3.4	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-H2C2_2	PF13465.6	gi|296243065|ref|YP_003650552.1|	-	0.053	14.0	1.6	7.2	7.2	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger	double	domain
UPF0547	PF10571.9	gi|296243065|ref|YP_003650552.1|	-	0.064	13.3	3.6	0.49	10.5	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
TFIIS_C	PF01096.18	gi|296243065|ref|YP_003650552.1|	-	0.11	12.4	1.6	3	7.8	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-ribbon_3	PF13248.6	gi|296243065|ref|YP_003650552.1|	-	0.14	11.6	5.7	0.84	9.1	0.7	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
CpXC	PF14353.6	gi|296243065|ref|YP_003650552.1|	-	0.66	10.0	2.3	18	5.4	0.1	2.1	1	1	1	2	2	2	0	CpXC	protein
zinc_ribbon_2	PF13240.6	gi|296243065|ref|YP_003650552.1|	-	5.8	6.8	9.8	2.6	7.9	2.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Glu_synthase	PF01645.17	gi|296243066|ref|YP_003650553.1|	-	0.063	12.4	0.0	0.087	11.9	0.0	1.1	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
PEP-CTERM	PF07589.11	gi|296243066|ref|YP_003650553.1|	-	0.39	10.9	2.1	1.4	9.1	2.1	2.0	1	0	0	1	1	1	0	PEP-CTERM	motif
RNase_P_Rpp14	PF01900.19	gi|296243067|ref|YP_003650554.1|	-	1e-07	32.1	0.0	1.6e-07	31.5	0.0	1.3	1	0	0	1	1	1	1	Rpp14/Pop5	family
E1_UFD	PF09358.10	gi|296243067|ref|YP_003650554.1|	-	0.12	13.1	0.0	0.19	12.4	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin	fold	domain
RNase_P_p30	PF01876.16	gi|296243068|ref|YP_003650555.1|	-	0.0019	17.7	0.0	0.0053	16.2	0.0	1.7	1	1	0	1	1	1	1	RNase	P	subunit	p30
RNA_binding	PF01877.17	gi|296243069|ref|YP_003650556.1|	-	7e-33	113.4	0.1	1e-32	112.9	0.1	1.3	1	0	0	1	1	1	1	RNA	binding
Ribosomal_L15e	PF00827.17	gi|296243070|ref|YP_003650557.1|	-	2e-84	282.1	4.8	2.5e-84	281.8	4.8	1.2	1	0	0	1	1	1	1	Ribosomal	L15
Rpn9_C	PF18261.1	gi|296243070|ref|YP_003650557.1|	-	0.038	13.6	0.2	0.082	12.5	0.2	1.5	1	0	0	1	1	1	0	Rpn9	C-terminal	helix
MMR_HSR1_C	PF08438.10	gi|296243071|ref|YP_003650558.1|	-	5.9e-34	117.0	0.0	1.1e-33	116.1	0.0	1.5	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|296243071|ref|YP_003650558.1|	-	9e-21	74.1	0.0	2.4e-20	72.7	0.0	1.7	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|296243071|ref|YP_003650558.1|	-	1.3e-12	47.6	0.0	2.5e-12	46.7	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|296243071|ref|YP_003650558.1|	-	1.2e-05	24.9	0.6	0.00018	21.1	0.1	2.7	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|296243071|ref|YP_003650558.1|	-	0.00028	20.5	0.4	3.7	7.1	0.0	3.1	3	0	0	3	3	3	2	Elongation	factor	Tu	GTP	binding	domain
YchF-GTPase_C	PF06071.13	gi|296243071|ref|YP_003650558.1|	-	0.025	14.8	0.0	0.47	10.7	0.0	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF933)
ABC_tran	PF00005.27	gi|296243071|ref|YP_003650558.1|	-	0.036	14.6	0.0	0.11	13.1	0.0	1.7	2	0	0	2	2	2	0	ABC	transporter
AAA_23	PF13476.6	gi|296243071|ref|YP_003650558.1|	-	0.05	14.1	0.1	0.11	13.0	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|296243071|ref|YP_003650558.1|	-	0.059	13.1	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Peripla_BP_6	PF13458.6	gi|296243071|ref|YP_003650558.1|	-	0.094	12.4	0.0	0.56	9.8	0.0	1.9	2	0	0	2	2	2	0	Periplasmic	binding	protein
AAA_21	PF13304.6	gi|296243071|ref|YP_003650558.1|	-	0.14	12.0	0.1	0.22	11.3	0.1	1.3	1	0	0	1	1	1	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF2095	PF09868.9	gi|296243072|ref|YP_003650559.1|	-	3.7e-19	69.0	0.3	1.9e-17	63.4	0.3	2.0	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2095)
SUKH_5	PF14567.6	gi|296243072|ref|YP_003650559.1|	-	0.013	15.2	0.0	0.033	13.9	0.0	1.5	1	1	1	2	2	2	0	SMI1-KNR4	cell-wall
DED	PF01335.21	gi|296243072|ref|YP_003650559.1|	-	0.052	13.9	0.0	0.078	13.3	0.0	1.2	1	0	0	1	1	1	0	Death	effector	domain
CtsR_C	PF17727.1	gi|296243072|ref|YP_003650559.1|	-	0.08	13.1	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	CtsR	C-terminal	dimerization	domain
NTP_transferase	PF00483.23	gi|296243073|ref|YP_003650560.1|	-	3.8e-33	115.1	0.0	6.3e-33	114.4	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|296243073|ref|YP_003650560.1|	-	1.1e-13	50.3	13.3	0.00028	20.5	2.2	4.8	2	1	2	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|296243073|ref|YP_003650560.1|	-	4e-13	50.0	0.0	6.2e-13	49.4	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.6	gi|296243073|ref|YP_003650560.1|	-	0.0022	17.7	3.0	0.33	10.7	0.0	3.7	3	0	0	3	3	3	1	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|296243073|ref|YP_003650560.1|	-	0.012	15.3	0.0	0.017	14.9	0.0	1.2	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF4954	PF16314.5	gi|296243073|ref|YP_003650560.1|	-	0.016	13.4	0.3	0.079	11.1	0.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4954)
Ribosomal_S3Ae	PF01015.18	gi|296243074|ref|YP_003650561.1|	-	2.7e-67	226.3	0.5	3.1e-67	226.1	0.5	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
CshA_NR2	PF18651.1	gi|296243074|ref|YP_003650561.1|	-	0.16	11.1	0.0	0.2	10.8	0.0	1.1	1	0	0	1	1	1	0	Surface	adhesin	CshA	non-repetitive	domain	2
Pcc1	PF09341.10	gi|296243075|ref|YP_003650562.1|	-	0.022	14.9	0.0	0.026	14.6	0.0	1.2	1	0	0	1	1	1	0	Transcription	factor	Pcc1
DUF4984	PF16372.5	gi|296243076|ref|YP_003650563.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4984)
Beta_propel	PF09826.9	gi|296243077|ref|YP_003650564.1|	-	2.2e-125	419.5	0.0	2.5e-125	419.2	0.0	1.0	1	0	0	1	1	1	1	Beta	propeller	domain
Inhibitor_I69	PF13734.6	gi|296243077|ref|YP_003650564.1|	-	0.02	15.3	1.0	4.1	7.9	0.0	3.2	3	0	0	3	3	3	0	Spi	protease	inhibitor
TrmB	PF01978.19	gi|296243078|ref|YP_003650565.1|	-	1e-08	34.9	0.1	1.5e-08	34.4	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|296243078|ref|YP_003650565.1|	-	9e-08	31.9	0.0	1.3e-07	31.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|296243078|ref|YP_003650565.1|	-	4.8e-07	29.5	0.1	7.9e-07	28.8	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|296243078|ref|YP_003650565.1|	-	4.9e-07	29.2	0.0	7.4e-07	28.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|296243078|ref|YP_003650565.1|	-	5e-06	26.5	0.0	7.7e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|296243078|ref|YP_003650565.1|	-	2.9e-05	23.8	0.0	4.9e-05	23.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
LexA_DNA_bind	PF01726.16	gi|296243078|ref|YP_003650565.1|	-	0.00023	20.9	0.0	0.00038	20.2	0.0	1.3	1	0	0	1	1	1	1	LexA	DNA	binding	domain
DprA_WH	PF17782.1	gi|296243078|ref|YP_003650565.1|	-	0.0011	19.0	0.0	0.0016	18.5	0.0	1.2	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_27	PF13463.6	gi|296243078|ref|YP_003650565.1|	-	0.0019	18.6	0.0	0.0032	17.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF2768	PF10966.8	gi|296243078|ref|YP_003650565.1|	-	0.0031	17.9	2.5	0.0055	17.1	2.5	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2768)
HTH_30	PF13556.6	gi|296243078|ref|YP_003650565.1|	-	0.0078	16.0	0.0	0.013	15.3	0.0	1.4	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR	PF01047.22	gi|296243078|ref|YP_003650565.1|	-	0.012	15.6	0.0	0.023	14.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
B-block_TFIIIC	PF04182.12	gi|296243078|ref|YP_003650565.1|	-	0.012	15.7	0.0	0.023	14.9	0.0	1.5	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
Fe_dep_repress	PF01325.19	gi|296243078|ref|YP_003650565.1|	-	0.019	15.1	0.0	0.031	14.5	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_1	PF00126.27	gi|296243078|ref|YP_003650565.1|	-	0.026	14.5	0.0	0.042	13.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4_2	PF08281.12	gi|296243078|ref|YP_003650565.1|	-	0.032	13.9	0.0	0.057	13.1	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_11	PF08279.12	gi|296243078|ref|YP_003650565.1|	-	0.046	13.7	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
FaeA	PF04703.12	gi|296243078|ref|YP_003650565.1|	-	0.07	13.5	0.0	0.11	12.8	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
RepL	PF05732.11	gi|296243078|ref|YP_003650565.1|	-	0.076	12.4	0.0	0.7	9.3	0.0	2.0	1	1	1	2	2	2	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_Crp_2	PF13545.6	gi|296243078|ref|YP_003650565.1|	-	0.083	12.9	0.0	0.19	11.7	0.0	1.6	2	0	0	2	2	1	0	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|296243078|ref|YP_003650565.1|	-	0.09	13.1	0.0	0.15	12.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_12	PF08461.10	gi|296243078|ref|YP_003650565.1|	-	0.092	12.7	0.2	0.75	9.8	0.1	2.2	1	1	1	2	2	2	0	Ribonuclease	R	winged-helix	domain
HTH_38	PF13936.6	gi|296243078|ref|YP_003650565.1|	-	0.13	12.0	0.0	0.24	11.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
RP-C	PF03428.13	gi|296243078|ref|YP_003650565.1|	-	0.17	11.5	0.0	0.27	10.9	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
Mtf2_C	PF14061.6	gi|296243078|ref|YP_003650565.1|	-	0.17	12.1	0.0	0.35	11.1	0.0	1.5	1	0	0	1	1	1	0	Polycomb-like	MTF2	factor	2
tRNA_edit	PF04073.15	gi|296243079|ref|YP_003650566.1|	-	4.1e-32	110.8	0.1	4.8e-32	110.6	0.1	1.1	1	0	0	1	1	1	1	Aminoacyl-tRNA	editing	domain
tRNA_anti-codon	PF01336.25	gi|296243081|ref|YP_003650568.1|	-	0.12	12.4	2.9	1.6	8.8	0.0	3.8	4	1	0	4	4	4	0	OB-fold	nucleic	acid	binding	domain
TctA	PF01970.16	gi|296243082|ref|YP_003650569.1|	-	4e-52	177.3	43.5	4.8e-52	177.1	43.5	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
YdjM	PF04307.14	gi|296243083|ref|YP_003650570.1|	-	7.8e-14	51.4	1.2	1.2e-12	47.5	1.2	2.2	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
tRNA_anti-codon	PF01336.25	gi|296243083|ref|YP_003650570.1|	-	0.085	12.9	0.0	0.17	11.9	0.0	1.6	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
DUF2892	PF11127.8	gi|296243085|ref|YP_003650572.1|	-	0.014	15.4	4.8	0.018	15.0	4.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
2TM	PF13239.6	gi|296243085|ref|YP_003650572.1|	-	0.1	12.9	1.0	0.12	12.7	1.0	1.1	1	0	0	1	1	1	0	2TM	domain
Glycos_transf_2	PF00535.26	gi|296243086|ref|YP_003650573.1|	-	6.2e-09	35.9	0.0	6.6e-09	35.8	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_4	PF13704.6	gi|296243086|ref|YP_003650573.1|	-	0.041	14.4	0.0	0.045	14.3	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Thioredoxin_8	PF13905.6	gi|296243086|ref|YP_003650573.1|	-	0.063	13.6	0.0	9.2	6.7	0.0	2.0	1	1	1	2	2	2	0	Thioredoxin-like
Glycos_transf_1	PF00534.20	gi|296243088|ref|YP_003650575.1|	-	5.4e-17	61.9	0.0	9e-17	61.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|296243088|ref|YP_003650575.1|	-	1.3e-09	38.6	0.0	2.8e-09	37.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|296243088|ref|YP_003650575.1|	-	9.7e-08	32.2	3.1	1.6e-06	28.2	0.8	3.2	3	1	0	3	3	3	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|296243088|ref|YP_003650575.1|	-	0.0018	18.8	3.2	0.0029	18.1	0.9	2.4	3	1	0	3	3	3	1	Glycosyl	transferase	4-like	domain
Exostosin	PF03016.15	gi|296243088|ref|YP_003650575.1|	-	0.02	14.1	0.0	0.032	13.4	0.0	1.3	1	0	0	1	1	1	0	Exostosin	family
ALG11_N	PF15924.5	gi|296243088|ref|YP_003650575.1|	-	0.07	13.2	0.2	18	5.3	0.1	2.7	2	1	1	3	3	3	0	ALG11	mannosyltransferase	N-terminus
Glycos_transf_1	PF00534.20	gi|296243089|ref|YP_003650576.1|	-	7.9e-18	64.6	0.0	1.4e-17	63.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|296243089|ref|YP_003650576.1|	-	1.1e-13	51.8	0.0	2.3e-13	50.7	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Thioredoxin_3	PF13192.6	gi|296243091|ref|YP_003650578.1|	-	1.9e-16	59.8	0.1	2.3e-16	59.6	0.1	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
ArsD	PF06953.11	gi|296243091|ref|YP_003650578.1|	-	0.0026	18.1	0.0	0.003	17.9	0.0	1.1	1	0	0	1	1	1	1	Arsenical	resistance	operon	trans-acting	repressor	ArsD
DUF836	PF05768.14	gi|296243091|ref|YP_003650578.1|	-	0.0092	16.4	0.0	0.011	16.2	0.0	1.2	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Ribosomal_S13_N	PF08069.12	gi|296243092|ref|YP_003650579.1|	-	3.3e-23	81.5	0.1	7.3e-23	80.4	0.0	1.7	2	0	0	2	2	2	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.22	gi|296243092|ref|YP_003650579.1|	-	4.8e-18	65.1	0.3	7e-18	64.6	0.3	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S15
Amidinotransf	PF02274.17	gi|296243092|ref|YP_003650579.1|	-	0.15	11.2	0.0	0.17	10.9	0.0	1.1	1	0	0	1	1	1	0	Amidinotransferase
Ham1p_like	PF01725.16	gi|296243093|ref|YP_003650580.1|	-	4.9e-47	160.3	0.0	5.5e-47	160.1	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
RIO1	PF01163.22	gi|296243094|ref|YP_003650581.1|	-	2.3e-12	46.9	0.0	3.2e-12	46.4	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|296243094|ref|YP_003650581.1|	-	4.8e-12	46.3	0.2	2.8e-06	27.4	0.1	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|296243094|ref|YP_003650581.1|	-	1.4e-08	34.4	0.0	1.7e-08	34.2	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.14	gi|296243094|ref|YP_003650581.1|	-	6.9e-08	32.1	0.0	1.2e-07	31.3	0.0	1.4	1	0	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase_Tyr	PF07714.17	gi|296243094|ref|YP_003650581.1|	-	0.00029	20.2	0.0	0.00036	19.9	0.0	1.1	1	0	0	1	1	1	1	Protein	tyrosine	kinase
DUF234	PF03008.14	gi|296243094|ref|YP_003650581.1|	-	0.051	14.0	0.2	0.14	12.6	0.1	1.7	2	0	0	2	2	2	0	Archaea	bacterial	proteins	of	unknown	function
Peptidase_M22	PF00814.25	gi|296243095|ref|YP_003650582.1|	-	2.1e-66	224.4	0.0	2.5e-66	224.2	0.0	1.0	1	0	0	1	1	1	1	Glycoprotease	family
Flg_hook	PF02120.16	gi|296243095|ref|YP_003650582.1|	-	0.018	14.9	0.0	0.034	14.0	0.0	1.4	1	0	0	1	1	1	0	Flagellar	hook-length	control	protein	FliK
Ribosomal_S27	PF01599.19	gi|296243096|ref|YP_003650583.1|	-	1.5e-14	53.9	2.5	1.7e-14	53.7	2.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27a
OrfB_Zn_ribbon	PF07282.11	gi|296243096|ref|YP_003650583.1|	-	0.0012	18.7	0.4	0.0013	18.6	0.4	1.1	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
RNA_POL_M_15KD	PF02150.16	gi|296243096|ref|YP_003650583.1|	-	0.0025	17.7	0.3	0.0065	16.3	0.3	1.7	1	1	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.7	gi|296243096|ref|YP_003650583.1|	-	0.0068	16.4	2.7	0.0089	16.0	2.7	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
C1_1	PF00130.22	gi|296243096|ref|YP_003650583.1|	-	0.0074	16.2	1.0	0.0098	15.8	1.0	1.2	1	0	0	1	1	1	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
TackOD1	PF18551.1	gi|296243096|ref|YP_003650583.1|	-	0.015	15.0	0.2	0.015	15.0	0.2	1.2	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
Nudix_N_2	PF14803.6	gi|296243096|ref|YP_003650583.1|	-	0.018	14.9	6.9	0.1	12.5	6.9	2.0	1	1	0	1	1	1	0	Nudix	N-terminal
Ribosomal_L37ae	PF01780.19	gi|296243096|ref|YP_003650583.1|	-	0.034	14.2	0.5	0.036	14.2	0.5	1.1	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
Lar_restr_allev	PF14354.6	gi|296243096|ref|YP_003650583.1|	-	0.039	14.3	2.2	0.051	14.0	2.2	1.3	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf_UBZ	PF18439.1	gi|296243096|ref|YP_003650583.1|	-	0.044	13.4	2.5	0.19	11.4	0.2	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
TF_Zn_Ribbon	PF08271.12	gi|296243096|ref|YP_003650583.1|	-	0.057	12.9	5.4	2	8.0	1.0	2.9	2	1	0	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|296243096|ref|YP_003650583.1|	-	0.065	12.7	4.9	0.12	11.8	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2387	PF09526.10	gi|296243096|ref|YP_003650583.1|	-	0.08	13.1	1.4	0.1	12.7	1.4	1.2	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
GFA	PF04828.14	gi|296243096|ref|YP_003650583.1|	-	0.08	13.3	1.9	0.42	11.0	0.1	1.9	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
A2L_zn_ribbon	PF08792.10	gi|296243096|ref|YP_003650583.1|	-	0.093	12.5	2.0	0.67	9.8	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|296243096|ref|YP_003650583.1|	-	0.13	12.0	5.9	0.17	11.6	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DpnI	PF06044.12	gi|296243096|ref|YP_003650583.1|	-	0.16	11.6	0.3	0.15	11.6	0.3	1.1	1	0	0	1	1	1	0	Dam-replacing	family
zf_C2H2_10	PF18414.1	gi|296243096|ref|YP_003650583.1|	-	0.21	11.2	2.3	3.2	7.4	0.5	2.1	2	0	0	2	2	2	0	C2H2	type	zinc-finger
YhfH	PF14149.6	gi|296243096|ref|YP_003650583.1|	-	0.48	10.5	5.2	4.7	7.3	5.0	2.1	1	1	0	1	1	1	0	YhfH-like	protein
Rubredoxin_2	PF18073.1	gi|296243096|ref|YP_003650583.1|	-	0.49	10.2	7.2	4.1	7.2	0.1	2.2	1	1	1	2	2	2	0	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|296243096|ref|YP_003650583.1|	-	0.79	9.9	5.5	0.55	10.4	0.5	2.2	1	1	0	2	2	2	0	Zinc	ribbon	domain
Ribosomal_S24e	PF01282.19	gi|296243097|ref|YP_003650584.1|	-	7.4e-19	67.5	0.0	8.9e-19	67.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
DUF359	PF04019.12	gi|296243098|ref|YP_003650585.1|	-	1.5e-16	60.2	0.0	2.2e-16	59.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
Spt4	PF06093.13	gi|296243099|ref|YP_003650586.1|	-	2.3e-13	50.0	0.1	2.7e-13	49.8	0.1	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
zf-ribbon_3	PF13248.6	gi|296243099|ref|YP_003650586.1|	-	1.7e-05	24.1	1.1	2.3e-05	23.6	1.1	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|296243099|ref|YP_003650586.1|	-	0.0013	19.5	1.4	0.0016	19.1	1.4	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
zf-C4H2	PF10146.9	gi|296243099|ref|YP_003650586.1|	-	0.0026	18.1	0.6	0.0033	17.8	0.6	1.2	1	0	0	1	1	1	1	Zinc	finger-containing	protein
NRDD	PF13597.6	gi|296243099|ref|YP_003650586.1|	-	0.0028	16.5	0.2	0.0028	16.5	0.2	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
DZR	PF12773.7	gi|296243099|ref|YP_003650586.1|	-	0.0028	17.7	1.5	0.0039	17.2	1.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|296243099|ref|YP_003650586.1|	-	0.0035	16.8	0.6	0.029	13.9	0.0	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
DUF35_N	PF12172.8	gi|296243099|ref|YP_003650586.1|	-	0.0057	16.5	1.1	0.009	15.9	1.1	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-RRN7	PF11781.8	gi|296243099|ref|YP_003650586.1|	-	0.0082	15.8	0.5	0.0082	15.8	0.5	1.9	2	0	0	2	2	2	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
HypA	PF01155.19	gi|296243099|ref|YP_003650586.1|	-	0.011	15.7	0.6	0.015	15.3	0.6	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|296243099|ref|YP_003650586.1|	-	0.018	14.7	1.3	0.031	14.0	1.3	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
TackOD1	PF18551.1	gi|296243099|ref|YP_003650586.1|	-	0.041	13.5	0.4	0.055	13.1	0.4	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-RING_4	PF14570.6	gi|296243099|ref|YP_003650586.1|	-	0.066	13.0	1.9	0.1	12.4	1.9	1.2	1	0	0	1	1	1	0	RING/Ubox	like	zinc-binding	domain
NMD3	PF04981.13	gi|296243099|ref|YP_003650586.1|	-	0.068	12.6	0.8	0.12	11.8	0.8	1.6	1	1	0	1	1	1	0	NMD3	family
Zn-ribbon_8	PF09723.10	gi|296243099|ref|YP_003650586.1|	-	0.23	11.6	5.0	1.5	9.0	5.0	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|296243099|ref|YP_003650586.1|	-	0.67	10.7	5.0	0.55	10.9	0.4	2.5	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-ACC	PF17848.1	gi|296243099|ref|YP_003650586.1|	-	1.3	9.2	7.2	9.2	6.4	7.2	2.1	1	1	0	1	1	1	0	Acetyl-coA	carboxylase	zinc	finger	domain
RNA_POL_M_15KD	PF02150.16	gi|296243099|ref|YP_003650586.1|	-	1.5	8.8	5.2	5.9	6.9	0.4	2.3	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
SHS2_Rpb7-N	PF03876.17	gi|296243100|ref|YP_003650587.1|	-	8.5e-14	51.7	0.0	3.2e-13	49.9	0.0	2.0	1	1	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.23	gi|296243100|ref|YP_003650587.1|	-	9.3e-10	38.7	1.2	3.5e-09	36.9	1.4	1.9	1	1	1	2	2	2	2	S1	RNA	binding	domain
RNA_pol_Rbc25	PF08292.12	gi|296243100|ref|YP_003650587.1|	-	8.8e-06	26.0	0.1	2.6e-05	24.4	0.0	1.7	1	1	1	2	2	2	1	RNA	polymerase	III	subunit	Rpc25
PIN_9	PF18477.1	gi|296243101|ref|YP_003650588.1|	-	3.9e-16	59.4	0.4	4.6e-16	59.2	0.4	1.0	1	0	0	1	1	1	1	PIN	like	domain
Fcf1	PF04900.12	gi|296243101|ref|YP_003650588.1|	-	0.0096	16.3	0.1	0.013	15.9	0.1	1.2	1	0	0	1	1	1	1	Fcf1
YhzD	PF14120.6	gi|296243101|ref|YP_003650588.1|	-	0.049	13.7	0.1	0.11	12.6	0.1	1.5	1	0	0	1	1	1	0	YhzD-like	protein
DUF5615	PF18480.1	gi|296243101|ref|YP_003650588.1|	-	0.076	12.8	0.0	0.15	11.8	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5615)
GTP_EFTU	PF00009.27	gi|296243102|ref|YP_003650589.1|	-	7.9e-29	100.6	0.3	4e-28	98.3	0.3	2.0	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.11	gi|296243102|ref|YP_003650589.1|	-	4.1e-26	91.1	0.8	8.1e-26	90.1	0.8	1.5	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.25	gi|296243102|ref|YP_003650589.1|	-	6e-08	33.0	1.0	3.4e-07	30.5	0.4	2.3	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
RsgA_GTPase	PF03193.16	gi|296243102|ref|YP_003650589.1|	-	4.9e-06	26.5	0.2	0.0011	19.0	0.0	3.0	3	0	0	3	3	3	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|296243102|ref|YP_003650589.1|	-	4.1e-05	23.6	0.0	9.7e-05	22.4	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.9	gi|296243102|ref|YP_003650589.1|	-	0.0076	16.0	0.2	0.79	9.5	0.0	2.5	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
FeoB_N	PF02421.18	gi|296243102|ref|YP_003650589.1|	-	0.044	13.3	0.3	4.6	6.8	0.0	2.4	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
MMR_HSR1_Xtn	PF16897.5	gi|296243102|ref|YP_003650589.1|	-	0.12	12.4	0.0	0.22	11.6	0.0	1.4	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
Ribosomal_S6e	PF01092.19	gi|296243103|ref|YP_003650590.1|	-	7.9e-32	109.9	0.1	2e-31	108.5	0.0	1.7	3	0	0	3	3	3	1	Ribosomal	protein	S6e
GTP_EFTU_D4	PF14578.6	gi|296243104|ref|YP_003650591.1|	-	5.4e-37	125.6	1.3	1.5e-36	124.2	1.3	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
GTP_EFTU	PF00009.27	gi|296243104|ref|YP_003650591.1|	-	1.3e-33	116.1	0.0	3.4e-33	114.8	0.0	1.6	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.8	gi|296243104|ref|YP_003650591.1|	-	1.6e-22	79.6	0.3	3.8e-22	78.4	0.3	1.6	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|296243104|ref|YP_003650591.1|	-	7.8e-12	45.4	1.3	3.1e-10	40.3	0.0	3.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|296243104|ref|YP_003650591.1|	-	6.3e-07	29.5	0.0	2e-06	27.8	0.0	1.9	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Roc	PF08477.13	gi|296243104|ref|YP_003650591.1|	-	0.0046	17.2	0.0	0.036	14.3	0.0	2.5	3	0	0	3	3	3	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
ATP_bind_1	PF03029.17	gi|296243104|ref|YP_003650591.1|	-	0.0056	16.5	0.0	0.025	14.4	0.0	2.0	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
AAA_22	PF13401.6	gi|296243104|ref|YP_003650591.1|	-	0.0056	16.9	0.0	0.02	15.2	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Ras	PF00071.22	gi|296243104|ref|YP_003650591.1|	-	0.0099	15.5	0.0	0.086	12.4	0.0	2.6	1	1	1	2	2	2	1	Ras	family
RsgA_GTPase	PF03193.16	gi|296243104|ref|YP_003650591.1|	-	0.012	15.5	0.3	1.4	8.8	0.0	3.1	3	1	1	4	4	4	0	RsgA	GTPase
Dynamin_N	PF00350.23	gi|296243104|ref|YP_003650591.1|	-	0.018	15.1	0.0	0.13	12.4	0.0	2.2	2	0	0	2	2	2	0	Dynamin	family
Arf	PF00025.21	gi|296243104|ref|YP_003650591.1|	-	0.05	13.0	0.0	19	4.7	0.0	2.9	2	1	0	2	2	2	0	ADP-ribosylation	factor	family
PduV-EutP	PF10662.9	gi|296243104|ref|YP_003650591.1|	-	0.12	12.1	0.0	0.55	10.0	0.0	2.1	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
Rubrerythrin	PF02915.17	gi|296243105|ref|YP_003650592.1|	-	2.7e-09	37.5	12.8	2e-08	34.8	10.9	2.0	1	1	0	1	1	1	1	Rubrerythrin
DUF2383	PF09537.10	gi|296243105|ref|YP_003650592.1|	-	0.036	14.4	3.4	0.055	13.8	0.3	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2383)
FEZ	PF07763.13	gi|296243105|ref|YP_003650592.1|	-	0.081	12.7	4.8	0.096	12.4	4.8	1.0	1	0	0	1	1	1	0	FEZ-like	protein
WAC_Acf1_DNA_bd	PF10537.9	gi|296243105|ref|YP_003650592.1|	-	0.15	12.5	1.5	0.76	10.3	0.6	2.1	1	1	1	2	2	2	0	ATP-utilising	chromatin	assembly	and	remodelling	N-terminal
DNA_primase_lrg	PF04104.14	gi|296243105|ref|YP_003650592.1|	-	0.25	10.7	2.1	0.34	10.3	2.1	1.1	1	0	0	1	1	1	0	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
GRIM-19	PF06212.12	gi|296243105|ref|YP_003650592.1|	-	0.34	10.9	1.7	0.46	10.4	1.3	1.5	1	1	0	1	1	1	0	GRIM-19	protein
DUF1295	PF06966.12	gi|296243106|ref|YP_003650593.1|	-	1.1e-05	25.1	0.1	2e-05	24.2	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1295)
ICMT	PF04140.14	gi|296243106|ref|YP_003650593.1|	-	2e-05	24.9	1.0	7.5e-05	23.1	0.1	2.5	2	1	0	2	2	2	1	Isoprenylcysteine	carboxyl	methyltransferase	(ICMT)	family
NnrU	PF07298.11	gi|296243106|ref|YP_003650593.1|	-	3.3e-05	23.5	0.3	0.00017	21.2	0.1	2.3	1	1	1	2	2	2	1	NnrU	protein
PEMT	PF04191.13	gi|296243106|ref|YP_003650593.1|	-	0.0012	19.2	0.2	0.0012	19.2	0.2	3.3	4	1	0	4	4	4	1	Phospholipid	methyltransferase
Ribosomal_L24e	PF01246.20	gi|296243107|ref|YP_003650594.1|	-	3.6e-21	75.1	1.1	3.8e-21	75.1	1.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|296243107|ref|YP_003650594.1|	-	3.7e-06	26.8	0.5	4.9e-06	26.4	0.5	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-C6H2	PF15801.5	gi|296243107|ref|YP_003650594.1|	-	0.019	15.3	1.0	0.054	13.8	0.1	1.9	2	0	0	2	2	2	0	zf-MYND-like	zinc	finger,	mRNA-binding
zf-FLZ	PF04570.14	gi|296243107|ref|YP_003650594.1|	-	0.023	14.2	1.8	0.05	13.1	1.8	1.5	1	1	0	1	1	1	0	zinc-finger	of	the	FCS-type,	C2-C2
DUF2116	PF09889.9	gi|296243107|ref|YP_003650594.1|	-	0.11	12.5	1.3	0.46	10.5	0.2	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
VATC	PF18716.1	gi|296243107|ref|YP_003650594.1|	-	0.14	12.0	2.9	2.1	8.2	2.9	2.1	1	1	0	1	1	1	0	Vms1-associating	treble	clef	domain
Ribosomal_S28e	PF01200.18	gi|296243108|ref|YP_003650595.1|	-	3e-30	104.0	3.9	4.1e-30	103.6	3.9	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L7Ae	PF01248.26	gi|296243109|ref|YP_003650596.1|	-	3.5e-31	106.8	1.0	4.4e-31	106.5	1.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|296243109|ref|YP_003650596.1|	-	7.6e-05	22.5	0.2	0.00015	21.6	0.1	1.5	1	1	0	1	1	1	1	PELOTA	RNA	binding	domain
RNase_P_pop3	PF08228.11	gi|296243109|ref|YP_003650596.1|	-	0.0024	18.0	0.0	0.0029	17.7	0.0	1.1	1	0	0	1	1	1	1	RNase	P	subunit	Pop3
tRNA-synt_1c	PF00749.21	gi|296243110|ref|YP_003650597.1|	-	2e-71	240.4	0.0	3.2e-71	239.8	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|296243110|ref|YP_003650597.1|	-	1.6e-24	86.7	0.0	3.3e-24	85.7	0.0	1.6	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
DUF2118	PF09891.9	gi|296243111|ref|YP_003650598.1|	-	2.9e-17	63.0	0.1	3.3e-17	62.8	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
FMN_dh	PF01070.18	gi|296243112|ref|YP_003650599.1|	-	2e-19	69.8	1.2	6.1e-19	68.2	1.2	1.7	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
Memo	PF01875.17	gi|296243113|ref|YP_003650600.1|	-	7.6e-78	261.4	0.0	8.6e-78	261.2	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
Ribosomal_S2	PF00318.20	gi|296243114|ref|YP_003650601.1|	-	8.2e-24	84.0	0.0	1.6e-13	50.4	0.0	2.0	1	1	1	2	2	2	2	Ribosomal	protein	S2
RNA_pol_N	PF01194.17	gi|296243115|ref|YP_003650602.1|	-	1.2e-30	105.6	0.1	1.3e-30	105.5	0.1	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Chordopox_RPO7	PF05864.12	gi|296243115|ref|YP_003650602.1|	-	0.01	16.1	0.1	0.015	15.6	0.1	1.3	1	1	0	1	1	1	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
Ribosomal_S9	PF00380.19	gi|296243116|ref|YP_003650603.1|	-	3e-32	111.7	0.1	3.4e-32	111.5	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.18	gi|296243117|ref|YP_003650604.1|	-	3e-11	43.6	1.3	4.5e-09	36.6	1.3	2.3	1	1	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_L18	PF17135.4	gi|296243118|ref|YP_003650605.1|	-	2.8e-10	39.9	0.1	3.2e-10	39.7	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|296243118|ref|YP_003650605.1|	-	3.1e-06	27.9	0.0	4.6e-06	27.3	0.0	1.4	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
RNA_pol_A_bac	PF01000.26	gi|296243119|ref|YP_003650606.1|	-	8e-25	87.4	0.0	2.9e-24	85.6	0.0	1.9	2	1	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|296243119|ref|YP_003650606.1|	-	4e-17	61.4	0.0	5e-17	61.1	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Fer4_9	PF13187.6	gi|296243119|ref|YP_003650606.1|	-	1.7e-06	28.1	8.1	3.2e-06	27.2	8.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|296243119|ref|YP_003650606.1|	-	1.8e-06	28.4	6.7	4.3e-06	27.2	6.7	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|296243119|ref|YP_003650606.1|	-	8.8e-06	25.3	9.2	0.0018	18.0	1.5	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|296243119|ref|YP_003650606.1|	-	1.8e-05	24.7	7.1	3.7e-05	23.7	7.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|296243119|ref|YP_003650606.1|	-	0.00028	21.8	7.0	0.058	14.3	0.6	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|296243119|ref|YP_003650606.1|	-	0.00039	20.8	4.3	0.029	14.8	0.6	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|296243119|ref|YP_003650606.1|	-	0.0017	18.4	7.1	0.0032	17.6	7.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|296243119|ref|YP_003650606.1|	-	0.0021	18.1	10.0	0.066	13.3	1.7	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|296243119|ref|YP_003650606.1|	-	0.0027	18.5	15.4	0.023	15.6	4.2	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|296243119|ref|YP_003650606.1|	-	0.0038	17.2	11.1	0.072	13.2	1.2	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|296243119|ref|YP_003650606.1|	-	0.043	14.3	9.3	0.24	12.0	1.0	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|296243119|ref|YP_003650606.1|	-	0.18	12.4	12.6	0.1	13.1	2.2	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|296243119|ref|YP_003650606.1|	-	2.1	8.6	8.4	1.1	9.5	0.8	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|296243119|ref|YP_003650606.1|	-	2.5	8.7	7.4	15	6.2	0.3	2.4	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Ribosomal_S11	PF00411.19	gi|296243120|ref|YP_003650607.1|	-	4.2e-48	162.3	2.0	5.4e-48	162.0	2.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
M20_dimer	PF07687.14	gi|296243120|ref|YP_003650607.1|	-	0.019	14.9	0.2	0.033	14.1	0.2	1.3	1	0	0	1	1	1	0	Peptidase	dimerisation	domain
BKACE	PF05853.12	gi|296243120|ref|YP_003650607.1|	-	0.06	12.6	0.3	0.074	12.3	0.3	1.1	1	0	0	1	1	1	0	beta-keto	acid	cleavage	enzyme
S4	PF01479.25	gi|296243121|ref|YP_003650608.1|	-	3.7e-16	58.6	0.1	7.9e-16	57.5	0.1	1.5	1	0	0	1	1	1	1	S4	domain
Ribosomal_S13	PF00416.22	gi|296243122|ref|YP_003650609.1|	-	4.3e-39	133.8	0.0	5.4e-39	133.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
Ribosomal_S10	PF00338.22	gi|296243123|ref|YP_003650610.1|	-	2.2e-23	82.3	0.1	2.4e-23	82.2	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
PriA_C	PF18074.1	gi|296243123|ref|YP_003650610.1|	-	0.019	15.8	0.1	0.046	14.5	0.0	1.6	2	0	0	2	2	2	0	Primosomal	protein	N	C-terminal	domain
GTP_EFTU	PF00009.27	gi|296243124|ref|YP_003650611.1|	-	1.5e-54	184.5	0.0	2.2e-54	184.0	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|296243124|ref|YP_003650611.1|	-	2.1e-37	127.9	0.1	1.8e-36	124.9	0.0	2.3	3	0	0	3	3	3	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|296243124|ref|YP_003650611.1|	-	1.4e-14	54.2	1.9	3.3e-14	53.0	1.9	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.6	gi|296243124|ref|YP_003650611.1|	-	4.4e-06	26.5	0.8	1.5e-05	24.8	0.8	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
MMR_HSR1	PF01926.23	gi|296243124|ref|YP_003650611.1|	-	8.4e-05	22.6	0.0	0.00058	19.9	0.0	2.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.23	gi|296243124|ref|YP_003650611.1|	-	0.089	12.8	0.0	17	5.4	0.0	2.3	1	1	1	2	2	2	0	Dynamin	family
Septin	PF00735.18	gi|296243124|ref|YP_003650611.1|	-	0.16	11.3	0.0	0.86	8.8	0.0	2.1	2	1	0	2	2	2	0	Septin
FeoB_N	PF02421.18	gi|296243124|ref|YP_003650611.1|	-	0.16	11.5	0.0	2.8	7.5	0.0	2.6	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Ribosomal_S7	PF00177.21	gi|296243125|ref|YP_003650612.1|	-	2.6e-43	147.2	0.2	3.2e-43	146.9	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
DNase-RNase	PF02577.14	gi|296243126|ref|YP_003650613.1|	-	2e-06	27.5	0.0	2.5e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	Bifunctional	nuclease
Ribosom_S12_S23	PF00164.25	gi|296243127|ref|YP_003650614.1|	-	4.1e-45	152.1	0.3	5.5e-45	151.7	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
KH_5	PF13184.6	gi|296243128|ref|YP_003650615.1|	-	6.7e-15	54.9	2.6	6.4e-13	48.6	0.3	2.2	2	0	0	2	2	2	2	NusA-like	KH	domain
KH_2	PF07650.17	gi|296243128|ref|YP_003650615.1|	-	2.1e-14	53.1	2.8	8.3e-09	35.2	0.2	2.2	1	1	1	2	2	2	2	KH	domain
KH_4	PF13083.6	gi|296243128|ref|YP_003650615.1|	-	6.1e-09	35.6	0.1	0.00048	20.0	0.1	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|296243128|ref|YP_003650615.1|	-	0.00012	21.8	0.2	0.11	12.3	0.0	2.7	3	0	0	3	3	3	2	KH	domain
Ribosomal_L7Ae	PF01248.26	gi|296243129|ref|YP_003650616.1|	-	9.9e-17	60.5	0.0	1.2e-16	60.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
RNA_pol_Rpb1_5	PF04998.17	gi|296243130|ref|YP_003650617.1|	-	6.6e-53	179.9	1.7	1e-52	179.2	1.7	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
RNA_pol_Rpb1_7	PF04990.12	gi|296243130|ref|YP_003650617.1|	-	0.0044	17.0	2.0	0.012	15.6	0.2	2.4	2	1	1	3	3	3	1	RNA	polymerase	Rpb1,	domain	7
Rotamase_2	PF13145.6	gi|296243130|ref|YP_003650617.1|	-	0.068	14.0	0.1	0.17	12.7	0.1	1.7	1	0	0	1	1	1	0	PPIC-type	PPIASE	domain
RNA_pol_Rpb1_1	PF04997.12	gi|296243131|ref|YP_003650618.1|	-	1.9e-98	329.7	0.0	2.5e-98	329.3	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|296243131|ref|YP_003650618.1|	-	3.1e-75	252.0	0.0	1.1e-74	250.2	0.0	1.8	2	0	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_3	PF04983.18	gi|296243131|ref|YP_003650618.1|	-	1.1e-34	119.7	0.0	2e-34	118.8	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_5	PF04998.17	gi|296243131|ref|YP_003650618.1|	-	9e-26	90.9	0.1	1.5e-25	90.2	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
RNA_pol_Rpb1_4	PF05000.17	gi|296243131|ref|YP_003650618.1|	-	5.5e-25	87.4	0.0	1.1e-24	86.4	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
Zn-ribbon_8	PF09723.10	gi|296243131|ref|YP_003650618.1|	-	0.015	15.4	1.2	3	8.0	0.0	3.2	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|296243131|ref|YP_003650618.1|	-	3	7.4	8.0	1.5	8.3	0.2	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|296243131|ref|YP_003650618.1|	-	3.4	7.8	9.2	40	4.4	0.1	3.6	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-RRN7	PF11781.8	gi|296243131|ref|YP_003650618.1|	-	6.6	6.5	10.2	5.1	6.9	0.8	2.9	3	0	0	3	3	3	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-ISL3	PF14690.6	gi|296243131|ref|YP_003650618.1|	-	8.9	7.1	9.0	6.6	7.5	0.2	3.3	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
RNA_pol_Rpb2_6	PF00562.28	gi|296243132|ref|YP_003650619.1|	-	7.3e-133	443.4	0.1	1.1e-132	442.8	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_1	PF04563.15	gi|296243132|ref|YP_003650619.1|	-	4e-48	163.6	0.0	5.6e-48	163.1	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.14	gi|296243132|ref|YP_003650619.1|	-	2.5e-28	99.0	0.2	1.3e-27	96.6	0.2	2.0	1	1	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.16	gi|296243132|ref|YP_003650619.1|	-	9.8e-27	92.9	0.0	2.1e-26	91.9	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_7	PF04560.20	gi|296243132|ref|YP_003650619.1|	-	1.2e-26	92.9	0.0	2.2e-26	92.1	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.13	gi|296243132|ref|YP_003650619.1|	-	3.1e-22	78.6	0.1	1.1e-21	76.9	0.1	2.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|296243132|ref|YP_003650619.1|	-	2.9e-09	37.3	0.0	9.7e-09	35.7	0.0	1.9	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
DDR_swiveling	PF18427.1	gi|296243132|ref|YP_003650619.1|	-	0.003	17.6	0.0	0.0065	16.5	0.0	1.5	1	0	0	1	1	1	1	DD-reactivating	factor	swiveling	domain
RNA_pol_Rpb5_C	PF01191.19	gi|296243133|ref|YP_003650620.1|	-	9.2e-31	105.5	0.0	1.1e-30	105.3	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
MS_channel	PF00924.18	gi|296243134|ref|YP_003650621.1|	-	6.4e-51	172.8	1.5	6.4e-51	172.8	1.5	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|296243134|ref|YP_003650621.1|	-	0.0035	17.3	3.8	0.0035	17.3	3.8	2.6	2	0	0	2	2	2	1	Conserved	TM	helix
DUF432	PF04254.13	gi|296243135|ref|YP_003650622.1|	-	1.6e-31	109.0	0.1	2.4e-31	108.5	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF432)
Tim29	PF10171.9	gi|296243135|ref|YP_003650622.1|	-	0.083	12.4	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	Translocase	of	the	Inner	Mitochondrial	membrane	29
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermosphaera_aggregans_DSM_11486_uid48993/NC_014160.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermosphaera_aggregans_DSM_11486_uid48993/NC_014160.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermosphaera_aggregans_DSM_11486_uid48993/NC_014160.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermosphaera_aggregans_DSM_11486_uid48993/NC_014160.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:12:13 2019
# [ok]