# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- HEPN PF05168.9 gi|327309924|ref|YP_004336821.1| - 4.8e-28 97.4 2.4 6e-28 97.1 1.7 1.0 1 0 0 1 1 1 1 HEPN domain HBS1_N PF08938.5 gi|327309924|ref|YP_004336821.1| - 0.01 15.9 0.1 0.02 15.0 0.1 1.6 1 1 0 1 1 1 0 HBS1 N-terminus NICE-3 PF07406.6 gi|327309924|ref|YP_004336821.1| - 0.05 13.0 0.1 0.073 12.5 0.0 1.3 1 1 0 1 1 1 0 NICE-3 protein gpW PF02831.10 gi|327309924|ref|YP_004336821.1| - 0.073 12.6 0.1 0.27 10.7 0.0 1.9 2 0 0 2 2 2 0 gpW PEP-utilisers_N PF05524.8 gi|327309924|ref|YP_004336821.1| - 0.34 10.7 3.4 2.1 8.1 0.1 2.2 1 1 1 2 2 2 0 PEP-utilising enzyme, N-terminal NTP_transf_2 PF01909.18 gi|327309925|ref|YP_004336822.1| - 2e-11 44.0 0.1 2.2e-11 43.9 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|327309925|ref|YP_004336822.1| - 0.0012 18.9 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm APS_kinase PF01583.15 gi|327309926|ref|YP_004336823.1| - 1e-57 194.2 0.0 1.2e-57 193.9 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|327309926|ref|YP_004336823.1| - 7.1e-08 32.4 0.1 8.7e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|327309926|ref|YP_004336823.1| - 2.7e-05 24.9 0.0 4e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|327309926|ref|YP_004336823.1| - 3.7e-05 23.0 0.0 4.1e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|327309926|ref|YP_004336823.1| - 4.1e-05 23.9 0.0 6.4e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|327309926|ref|YP_004336823.1| - 0.0019 17.8 1.0 0.0033 17.1 0.1 1.8 2 0 0 2 2 2 1 Part of AAA domain Zeta_toxin PF06414.7 gi|327309926|ref|YP_004336823.1| - 0.0077 15.3 0.0 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.10 gi|327309926|ref|YP_004336823.1| - 0.029 14.0 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 NTPase ArgK PF03308.11 gi|327309926|ref|YP_004336823.1| - 0.031 13.0 0.0 0.046 12.5 0.0 1.2 1 0 0 1 1 1 0 ArgK protein 6PF2K PF01591.13 gi|327309926|ref|YP_004336823.1| - 0.039 13.0 0.0 0.064 12.3 0.0 1.4 1 1 0 1 1 1 0 6-phosphofructo-2-kinase AAA_25 PF13481.1 gi|327309926|ref|YP_004336823.1| - 0.042 13.2 0.6 0.068 12.5 0.4 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|327309926|ref|YP_004336823.1| - 0.1 12.5 0.1 0.23 11.4 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain Phosphodiest PF01663.17 gi|327309927|ref|YP_004336824.1| - 8e-37 127.3 0.0 9.8e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|327309927|ref|YP_004336824.1| - 0.16 11.5 0.0 3.8 7.1 0.0 2.2 2 0 0 2 2 2 0 PglZ domain Sulfatase PF00884.18 gi|327309927|ref|YP_004336824.1| - 0.18 10.9 0.0 12 4.9 0.0 2.1 2 0 0 2 2 2 0 Sulfatase PRP4 PF08799.6 gi|327309928|ref|YP_004336825.1| - 0.46 9.7 3.6 22 4.4 0.0 2.3 1 1 1 2 2 2 0 pre-mRNA processing factor 4 (PRP4) like Sulfatase PF00884.18 gi|327309929|ref|YP_004336826.1| - 8.1e-20 71.2 0.0 1.9e-19 70.0 0.0 1.6 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|327309929|ref|YP_004336826.1| - 2.7e-09 36.8 0.2 2.1e-05 24.0 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|327309929|ref|YP_004336826.1| - 0.065 11.6 0.0 0.089 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Glycos_transf_2 PF00535.21 gi|327309930|ref|YP_004336827.1| - 2.4e-17 63.1 0.0 3.4e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|327309930|ref|YP_004336827.1| - 4.7e-09 36.3 0.0 6.5e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|327309930|ref|YP_004336827.1| - 0.00023 20.3 0.0 0.00038 19.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|327309930|ref|YP_004336827.1| - 0.003 17.8 0.0 0.0055 16.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|327309932|ref|YP_004336829.1| - 0.041 13.2 0.1 0.076 12.4 0.1 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|327309933|ref|YP_004336830.1| - 4.6e-16 58.7 0.1 8.4e-16 57.8 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|327309933|ref|YP_004336830.1| - 2.2e-05 24.6 0.0 4.5e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|327309933|ref|YP_004336830.1| - 0.00014 22.0 0.0 0.00029 21.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 HTH_Tnp_1_2 PF13022.1 gi|327309933|ref|YP_004336830.1| - 0.15 11.8 0.2 0.61 9.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase Glycos_transf_1 PF00534.15 gi|327309936|ref|YP_004336833.1| - 3.1e-34 117.8 0.0 4.9e-34 117.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|327309936|ref|YP_004336833.1| - 5e-15 55.8 0.0 8.4e-15 55.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|327309936|ref|YP_004336833.1| - 4.2e-07 30.1 0.0 8.7e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|327309937|ref|YP_004336834.1| - 1.7e-40 138.2 0.0 2.6e-40 137.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|327309937|ref|YP_004336834.1| - 9.3e-16 58.2 0.0 2.1e-15 57.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|327309937|ref|YP_004336834.1| - 5.3e-13 49.0 0.0 9.6e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|327309937|ref|YP_004336834.1| - 3.5e-11 43.4 0.0 5.8e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|327309937|ref|YP_004336834.1| - 1.1e-10 41.6 0.0 2.1e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|327309937|ref|YP_004336834.1| - 0.14 10.6 0.0 0.23 9.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 20 Glycos_transf_2 PF00535.21 gi|327309938|ref|YP_004336835.1| - 3.2e-08 33.4 0.0 4.4e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|327309938|ref|YP_004336835.1| - 6.4e-08 32.6 0.0 2.6e-07 30.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|327309938|ref|YP_004336835.1| - 0.026 14.2 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family group 2 3Beta_HSD PF01073.14 gi|327309939|ref|YP_004336836.1| - 4.1e-10 38.8 0.0 4.5e-10 38.6 0.0 1.0 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|327309939|ref|YP_004336836.1| - 1.7e-08 34.2 0.0 1.9e-08 34.0 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|327309939|ref|YP_004336836.1| - 0.00024 21.0 0.1 0.00027 20.9 0.0 1.2 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|327309939|ref|YP_004336836.1| - 0.00041 20.3 0.0 0.00045 20.2 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|327309939|ref|YP_004336836.1| - 0.0012 18.1 0.1 0.0015 17.8 0.1 1.2 1 1 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.10 gi|327309939|ref|YP_004336836.1| - 0.0013 17.7 0.0 0.0015 17.4 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|327309939|ref|YP_004336836.1| - 0.0034 16.3 0.1 0.004 16.1 0.1 1.3 1 1 0 1 1 1 1 Male sterility protein MutS_I PF01624.15 gi|327309939|ref|YP_004336836.1| - 0.013 15.4 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 MutS domain I KR PF08659.5 gi|327309939|ref|YP_004336836.1| - 0.016 14.8 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 KR domain Pyr_redox PF00070.22 gi|327309939|ref|YP_004336836.1| - 0.035 14.4 0.0 0.042 14.2 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|327309939|ref|YP_004336836.1| - 0.057 13.0 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|327309939|ref|YP_004336836.1| - 0.068 12.9 0.0 0.09 12.6 0.0 1.2 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glycos_transf_1 PF00534.15 gi|327309940|ref|YP_004336837.1| - 3.2e-33 114.5 0.0 4.7e-33 114.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|327309940|ref|YP_004336837.1| - 9e-16 58.2 0.1 3e-15 56.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|327309940|ref|YP_004336837.1| - 5.7e-13 49.3 0.0 1.2e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|327309940|ref|YP_004336837.1| - 1.7e-09 37.6 0.2 3.2e-09 36.7 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|327309940|ref|YP_004336837.1| - 8.6e-07 28.6 0.1 1.8e-06 27.6 0.1 1.5 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|327309940|ref|YP_004336837.1| - 4.1e-05 23.4 0.0 0.00012 21.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|327309940|ref|YP_004336837.1| - 0.0012 19.0 0.0 0.0022 18.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 PIGA PF08288.7 gi|327309940|ref|YP_004336837.1| - 0.0039 17.5 0.0 0.0083 16.4 0.0 1.5 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Methyltransf_21 PF05050.7 gi|327309941|ref|YP_004336838.1| - 1e-16 61.3 0.4 1.9e-16 60.4 0.3 1.4 1 1 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|327309941|ref|YP_004336838.1| - 1.2e-08 34.8 1.5 8e-06 25.5 0.1 2.3 1 1 1 2 2 2 2 Met-10+ like-protein Peptidase_M11 PF05548.6 gi|327309941|ref|YP_004336838.1| - 0.051 12.5 0.0 0.068 12.0 0.0 1.2 1 0 0 1 1 1 0 Gametolysin peptidase M11 Glycos_transf_1 PF00534.15 gi|327309942|ref|YP_004336839.1| - 1.5e-24 86.3 0.0 2.2e-24 85.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|327309942|ref|YP_004336839.1| - 2.1e-19 70.2 1.5 2.2e-19 70.1 0.4 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|327309942|ref|YP_004336839.1| - 7.7e-19 68.0 0.9 1.2e-18 67.5 0.7 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|327309942|ref|YP_004336839.1| - 1e-08 35.3 0.0 1.4e-07 31.7 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|327309942|ref|YP_004336839.1| - 4.3e-08 33.3 0.0 8.2e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|327309942|ref|YP_004336839.1| - 0.00019 21.2 0.1 0.00049 19.9 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|327309942|ref|YP_004336839.1| - 0.0055 16.2 4.8 0.085 12.3 2.6 2.3 1 1 1 2 2 2 1 Starch synthase catalytic domain Glycos_transf_2 PF00535.21 gi|327309943|ref|YP_004336840.1| - 4.7e-33 114.2 0.0 6.4e-33 113.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|327309943|ref|YP_004336840.1| - 2.6e-31 109.1 0.2 4.2e-31 108.5 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|327309943|ref|YP_004336840.1| - 8.3e-16 58.2 1.1 1.5e-15 57.4 0.8 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|327309943|ref|YP_004336840.1| - 1.3e-14 53.8 0.0 2.4e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|327309943|ref|YP_004336840.1| - 5.4e-07 28.9 0.0 7.9e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|327309943|ref|YP_004336840.1| - 1e-05 25.6 0.1 1.9e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.1 gi|327309943|ref|YP_004336840.1| - 1.5e-05 25.2 0.0 3.2e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2493 PF10686.4 gi|327309943|ref|YP_004336840.1| - 0.035 13.6 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) Glycos_transf_2 PF00535.21 gi|327309944|ref|YP_004336841.1| - 1.6e-16 60.4 0.0 2.2e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|327309944|ref|YP_004336841.1| - 3.7e-10 39.9 0.0 5.3e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|327309944|ref|YP_004336841.1| - 0.00026 20.3 0.6 0.0011 18.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 21 CofC PF01983.11 gi|327309944|ref|YP_004336841.1| - 0.081 11.8 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like DUF1616 PF07760.6 gi|327309946|ref|YP_004336843.1| - 5.3e-20 71.7 0.0 8.4e-20 71.0 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) DUF3995 PF13160.1 gi|327309946|ref|YP_004336843.1| - 0.16 11.9 11.4 0.12 12.4 2.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) DUF58 PF01882.13 gi|327309947|ref|YP_004336844.1| - 6.2e-13 48.7 0.3 1.9e-12 47.1 0.2 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|327309948|ref|YP_004336845.1| - 9.2e-39 132.0 0.0 1.3e-38 131.5 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|327309948|ref|YP_004336845.1| - 2.7e-17 62.7 0.0 6.5e-17 61.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|327309948|ref|YP_004336845.1| - 1.3e-09 37.5 0.4 0.00064 18.9 0.2 2.4 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|327309948|ref|YP_004336845.1| - 1.2e-06 28.7 0.1 4e-06 27.0 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|327309948|ref|YP_004336845.1| - 3e-05 23.0 0.4 0.2 10.4 0.1 2.7 2 1 0 2 2 2 2 MCM2/3/5 family RuvB_N PF05496.7 gi|327309948|ref|YP_004336845.1| - 0.0002 20.4 0.3 0.00079 18.5 0.2 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|327309948|ref|YP_004336845.1| - 0.00031 20.2 0.0 0.0011 18.4 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|327309948|ref|YP_004336845.1| - 0.00084 19.3 0.3 0.0034 17.3 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|327309948|ref|YP_004336845.1| - 0.00087 19.4 0.1 0.0036 17.4 0.0 1.9 1 1 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|327309948|ref|YP_004336845.1| - 0.0029 17.2 0.3 0.0076 15.8 0.2 1.7 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_2 PF07724.9 gi|327309948|ref|YP_004336845.1| - 0.0036 17.2 0.1 0.011 15.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_PrkA PF08298.6 gi|327309948|ref|YP_004336845.1| - 0.0043 15.7 0.0 0.29 9.7 0.0 2.1 2 0 0 2 2 2 1 PrkA AAA domain AAA_19 PF13245.1 gi|327309948|ref|YP_004336845.1| - 0.0043 16.7 4.4 0.0093 15.6 0.4 2.7 2 1 0 2 2 2 1 Part of AAA domain TIP49 PF06068.8 gi|327309948|ref|YP_004336845.1| - 0.0068 15.1 0.2 0.01 14.5 0.1 1.2 1 0 0 1 1 1 1 TIP49 C-terminus AAA_17 PF13207.1 gi|327309948|ref|YP_004336845.1| - 0.0078 17.0 0.3 0.016 16.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|327309948|ref|YP_004336845.1| - 0.019 15.2 0.2 0.04 14.1 0.2 1.5 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|327309948|ref|YP_004336845.1| - 0.025 14.0 0.4 0.045 13.1 0.3 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|327309948|ref|YP_004336845.1| - 0.034 14.0 0.0 0.074 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|327309948|ref|YP_004336845.1| - 0.035 14.4 0.0 0.042 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|327309948|ref|YP_004336845.1| - 0.035 14.2 0.0 0.092 12.9 0.0 1.9 1 1 0 1 1 1 0 RNA helicase T2SE PF00437.15 gi|327309948|ref|YP_004336845.1| - 0.04 12.8 0.1 0.069 12.0 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.1 gi|327309948|ref|YP_004336845.1| - 0.043 13.8 0.0 0.081 12.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.1 gi|327309948|ref|YP_004336845.1| - 0.054 12.8 0.1 0.12 11.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|327309948|ref|YP_004336845.1| - 0.055 13.1 0.4 0.12 11.9 0.3 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|327309948|ref|YP_004336845.1| - 0.057 13.7 0.1 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase_2 PF13335.1 gi|327309948|ref|YP_004336845.1| - 0.091 13.1 0.2 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|327309948|ref|YP_004336845.1| - 0.14 11.5 0.4 0.3 10.4 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain DUF4129 PF13559.1 gi|327309950|ref|YP_004336847.1| - 1.8e-07 31.0 5.4 2e-07 30.8 2.6 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|327309950|ref|YP_004336847.1| - 0.039 14.0 1.2 9.2 6.4 0.0 3.0 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain UPF0118 PF01594.11 gi|327309950|ref|YP_004336847.1| - 0.039 12.9 0.1 0.065 12.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF20 XPC-binding PF09280.6 gi|327309950|ref|YP_004336847.1| - 0.093 12.2 0.1 0.16 11.4 0.1 1.3 1 0 0 1 1 1 0 XPC-binding domain Glycos_transf_4 PF00953.16 gi|327309951|ref|YP_004336848.1| - 0.074 12.8 5.2 0.083 12.6 3.6 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 4 ATP_synt_H PF05493.8 gi|327309951|ref|YP_004336848.1| - 0.57 10.2 3.2 0.98 9.5 0.4 2.1 2 0 0 2 2 2 0 ATP synthase subunit H PepSY_TM_3 PF13706.1 gi|327309951|ref|YP_004336848.1| - 2.5 7.5 5.6 8.8 5.8 0.4 2.6 2 0 0 2 2 2 0 PepSY-associated TM helix NfeD PF01957.13 gi|327309952|ref|YP_004336849.1| - 2.3 8.3 6.9 3 7.9 1.4 2.5 3 0 0 3 3 3 0 NfeD-like C-terminal, partner-binding DUF1616 PF07760.6 gi|327309953|ref|YP_004336850.1| - 1.9e-31 109.2 10.6 2.6e-31 108.8 7.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MFS_1 PF07690.11 gi|327309953|ref|YP_004336850.1| - 0.035 12.8 13.4 0.045 12.4 9.3 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF4231 PF14015.1 gi|327309953|ref|YP_004336850.1| - 0.13 12.3 3.3 5.7 6.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF4395 PF14340.1 gi|327309953|ref|YP_004336850.1| - 0.16 12.0 6.6 0.82 9.7 4.6 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) Polysacc_synt PF01943.12 gi|327309954|ref|YP_004336851.1| - 1.5e-07 30.9 15.8 1.5e-07 30.9 11.0 2.9 2 2 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|327309954|ref|YP_004336851.1| - 2.2e-05 24.0 28.2 2.2e-05 24.0 19.5 2.9 1 1 2 3 3 3 2 Polysaccharide biosynthesis protein MS_channel PF00924.13 gi|327309954|ref|YP_004336851.1| - 0.98 8.7 3.5 3.3 7.0 2.5 1.9 1 0 0 1 1 1 0 Mechanosensitive ion channel PaREP1 PF05942.6 gi|327309955|ref|YP_004336852.1| - 2.6e-35 120.7 2.1 2.6e-35 120.7 1.4 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Lactamase_B PF00753.22 gi|327309956|ref|YP_004336853.1| - 2.9e-16 59.6 5.9 4.5e-16 59.0 4.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|327309956|ref|YP_004336853.1| - 3.1e-08 33.3 0.0 4.2e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AA_permease_2 PF13520.1 gi|327309957|ref|YP_004336854.1| - 1.3e-38 132.7 47.7 1.3e-38 132.7 33.1 2.2 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|327309957|ref|YP_004336854.1| - 2.7e-25 88.6 35.2 2.7e-25 88.6 24.4 2.7 2 1 1 3 3 3 1 Amino acid permease Reo_sigmaC PF04582.7 gi|327309958|ref|YP_004336855.1| - 0.00012 21.3 0.6 0.00015 21.0 0.4 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein XhlA PF10779.4 gi|327309958|ref|YP_004336855.1| - 0.00024 20.9 0.5 0.0012 18.7 0.1 2.0 1 1 1 2 2 2 1 Haemolysin XhlA CENP-F_leu_zip PF10473.4 gi|327309958|ref|YP_004336855.1| - 0.00078 19.3 4.5 0.001 18.9 3.1 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BLOC1_2 PF10046.4 gi|327309958|ref|YP_004336855.1| - 0.00091 19.3 0.8 0.0015 18.5 0.6 1.5 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|327309958|ref|YP_004336855.1| - 0.0014 18.2 0.9 0.002 17.7 0.6 1.4 1 0 0 1 1 1 1 IncA protein ADIP PF11559.3 gi|327309958|ref|YP_004336855.1| - 0.0024 17.7 0.9 0.004 17.0 0.6 1.4 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding DUF1626 PF07788.6 gi|327309958|ref|YP_004336855.1| - 0.0026 17.4 0.4 0.0052 16.5 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) Baculo_PEP_C PF04513.7 gi|327309958|ref|YP_004336855.1| - 0.0027 17.5 0.5 0.011 15.5 0.3 1.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus TMCO5 PF14992.1 gi|327309958|ref|YP_004336855.1| - 0.0051 15.9 0.9 0.0059 15.7 0.6 1.2 1 0 0 1 1 1 1 TMCO5 family RRN3 PF05327.6 gi|327309958|ref|YP_004336855.1| - 0.0052 14.9 0.6 0.0073 14.4 0.4 1.1 1 0 0 1 1 1 1 RNA polymerase I specific transcription initiation factor RRN3 RmuC PF02646.11 gi|327309958|ref|YP_004336855.1| - 0.0064 15.3 0.6 0.0083 14.9 0.4 1.2 1 0 0 1 1 1 1 RmuC family DivIC PF04977.10 gi|327309958|ref|YP_004336855.1| - 0.0078 15.6 0.8 0.024 14.1 0.1 2.2 1 1 1 2 2 2 1 Septum formation initiator Filament PF00038.16 gi|327309958|ref|YP_004336855.1| - 0.013 15.0 1.5 0.018 14.5 1.0 1.2 1 0 0 1 1 1 0 Intermediate filament protein ATG16 PF08614.6 gi|327309958|ref|YP_004336855.1| - 0.021 14.6 2.4 0.033 13.9 1.4 1.5 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF3883 PF13020.1 gi|327309958|ref|YP_004336855.1| - 0.027 14.2 0.1 0.054 13.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) Transposase_22 PF02994.9 gi|327309958|ref|YP_004336855.1| - 0.028 12.9 1.1 0.052 12.0 0.8 1.5 1 1 0 1 1 1 0 L1 transposable element NERD PF08378.6 gi|327309958|ref|YP_004336855.1| - 0.028 14.6 0.0 0.064 13.5 0.0 1.7 1 0 0 1 1 1 0 Nuclease-related domain Phage_GP20 PF06810.6 gi|327309958|ref|YP_004336855.1| - 0.032 13.6 1.0 0.091 12.1 0.2 1.9 1 1 1 2 2 2 0 Phage minor structural protein GP20 DUF3829 PF12889.2 gi|327309958|ref|YP_004336855.1| - 0.034 13.3 0.5 0.046 12.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) Spc7 PF08317.6 gi|327309958|ref|YP_004336855.1| - 0.034 12.8 1.1 0.04 12.5 0.8 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein TBPIP PF07106.8 gi|327309958|ref|YP_004336855.1| - 0.035 13.6 0.5 0.13 11.7 0.1 1.5 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CALCOCO1 PF07888.6 gi|327309958|ref|YP_004336855.1| - 0.036 12.3 2.9 0.041 12.1 2.0 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like AAA_13 PF13166.1 gi|327309958|ref|YP_004336855.1| - 0.039 12.4 0.6 0.046 12.1 0.4 1.1 1 0 0 1 1 1 0 AAA domain DUF4407 PF14362.1 gi|327309958|ref|YP_004336855.1| - 0.04 12.8 1.8 0.045 12.7 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3450 PF11932.3 gi|327309958|ref|YP_004336855.1| - 0.042 13.1 0.8 0.056 12.7 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF972 PF06156.8 gi|327309958|ref|YP_004336855.1| - 0.043 14.1 0.8 0.13 12.6 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF4515 PF14988.1 gi|327309958|ref|YP_004336855.1| - 0.044 13.4 1.3 0.061 12.9 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4515) AIP3 PF03915.8 gi|327309958|ref|YP_004336855.1| - 0.045 12.6 0.9 0.06 12.2 0.7 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 TMF_DNA_bd PF12329.3 gi|327309958|ref|YP_004336855.1| - 0.045 13.5 2.5 0.049 13.4 0.4 1.9 1 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Laminin_II PF06009.7 gi|327309958|ref|YP_004336855.1| - 0.047 13.4 1.2 0.081 12.6 0.8 1.4 1 0 0 1 1 1 0 Laminin Domain II V_ATPase_I PF01496.14 gi|327309958|ref|YP_004336855.1| - 0.053 11.3 0.9 0.058 11.2 0.6 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Prominin PF05478.6 gi|327309958|ref|YP_004336855.1| - 0.054 11.0 0.8 0.064 10.7 0.5 1.1 1 0 0 1 1 1 0 Prominin Fmp27_WPPW PF10359.4 gi|327309958|ref|YP_004336855.1| - 0.056 11.8 0.5 0.069 11.5 0.4 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain GAS PF13851.1 gi|327309958|ref|YP_004336855.1| - 0.058 12.5 1.5 0.078 12.1 1.1 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Tropomyosin PF00261.15 gi|327309958|ref|YP_004336855.1| - 0.061 12.4 6.0 0.094 11.7 4.1 1.3 1 0 0 1 1 1 0 Tropomyosin Amidohydro_4 PF13147.1 gi|327309958|ref|YP_004336855.1| - 0.069 13.1 0.4 0.097 12.6 0.1 1.4 1 1 0 1 1 1 0 Amidohydrolase DUF4143 PF13635.1 gi|327309958|ref|YP_004336855.1| - 0.08 13.1 0.8 0.13 12.4 0.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4143) DUF1664 PF07889.7 gi|327309958|ref|YP_004336855.1| - 0.081 12.7 2.8 0.06 13.1 0.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Jnk-SapK_ap_N PF09744.4 gi|327309958|ref|YP_004336855.1| - 0.092 12.7 0.9 0.15 12.0 0.6 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 bZIP_1 PF00170.16 gi|327309958|ref|YP_004336855.1| - 0.094 12.6 1.2 0.37 10.7 0.1 2.4 1 1 1 2 2 2 0 bZIP transcription factor End3 PF12761.2 gi|327309958|ref|YP_004336855.1| - 0.096 12.3 1.5 0.16 11.6 1.1 1.2 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Lzipper-MIP1 PF14389.1 gi|327309958|ref|YP_004336855.1| - 0.099 12.7 1.4 2.9 8.0 0.9 2.3 1 1 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 RHD3 PF05879.7 gi|327309958|ref|YP_004336855.1| - 0.11 10.3 0.5 0.12 10.2 0.4 1.1 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) FH2 PF02181.18 gi|327309958|ref|YP_004336855.1| - 0.11 11.3 0.7 0.15 10.9 0.5 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain Seryl_tRNA_N PF02403.17 gi|327309958|ref|YP_004336855.1| - 0.13 12.3 6.2 1.6 8.7 1.8 2.9 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain FlaC_arch PF05377.6 gi|327309958|ref|YP_004336855.1| - 0.14 12.0 0.2 1.1 9.1 0.2 2.5 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Octopine_DH PF02317.12 gi|327309958|ref|YP_004336855.1| - 0.16 11.5 0.3 0.24 11.0 0.2 1.2 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Spectrin PF00435.16 gi|327309958|ref|YP_004336855.1| - 0.17 12.1 2.5 0.64 10.3 1.7 2.0 1 1 0 1 1 1 0 Spectrin repeat DUF3373 PF11853.3 gi|327309958|ref|YP_004336855.1| - 0.18 10.3 0.3 0.2 10.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) H-kinase_dim PF02895.9 gi|327309958|ref|YP_004336855.1| - 0.19 12.1 2.0 0.56 10.5 0.8 2.4 2 1 0 2 2 1 0 Signal transducing histidine kinase, homodimeric domain TPR_MLP1_2 PF07926.7 gi|327309958|ref|YP_004336855.1| - 0.19 11.4 2.6 0.45 10.2 1.8 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein PspA_IM30 PF04012.7 gi|327309958|ref|YP_004336855.1| - 0.21 10.9 9.2 0.28 10.5 5.8 1.6 1 1 0 1 1 1 0 PspA/IM30 family Lge1 PF11488.3 gi|327309958|ref|YP_004336855.1| - 0.21 11.7 1.2 0.54 10.4 0.8 1.7 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 Atg14 PF10186.4 gi|327309958|ref|YP_004336855.1| - 0.25 10.2 0.8 0.31 9.9 0.6 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Striatin PF08232.7 gi|327309958|ref|YP_004336855.1| - 0.27 11.5 3.9 0.12 12.7 0.7 2.1 2 1 0 2 2 1 0 Striatin family Syntaxin-6_N PF09177.6 gi|327309958|ref|YP_004336855.1| - 0.29 11.5 2.3 1.1 9.7 0.7 2.5 2 1 0 2 2 1 0 Syntaxin 6, N-terminal PDDEXK_1 PF12705.2 gi|327309958|ref|YP_004336855.1| - 0.34 10.2 1.4 0.51 9.6 1.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF2968 PF11180.3 gi|327309958|ref|YP_004336855.1| - 0.39 10.0 5.7 0.089 12.1 1.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) APG6 PF04111.7 gi|327309958|ref|YP_004336855.1| - 0.49 9.3 2.5 0.63 9.0 1.7 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Prefoldin_2 PF01920.15 gi|327309958|ref|YP_004336855.1| - 0.77 9.5 6.2 0.48 10.2 1.7 2.4 2 1 0 2 2 1 0 Prefoldin subunit HEPN PF05168.9 gi|327309959|ref|YP_004336856.1| - 6.5e-28 96.9 0.6 7.4e-28 96.8 0.4 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|327309959|ref|YP_004336856.1| - 0.004 17.0 4.3 0.0064 16.3 3.0 1.6 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.1 gi|327309959|ref|YP_004336856.1| - 0.0045 17.0 5.6 0.0052 16.8 1.9 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) OEP PF02321.13 gi|327309959|ref|YP_004336856.1| - 0.17 11.4 2.3 0.34 10.4 1.6 1.5 1 0 0 1 1 1 0 Outer membrane efflux protein ATP-synt_DE PF00401.15 gi|327309959|ref|YP_004336856.1| - 0.27 11.1 3.7 14 5.6 0.0 2.5 2 1 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NTP_transf_2 PF01909.18 gi|327309960|ref|YP_004336857.1| - 2e-06 28.0 0.1 2.3e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain PAC2 PF09754.4 gi|327309960|ref|YP_004336857.1| - 0.022 14.6 0.0 0.025 14.4 0.0 1.3 1 1 0 1 1 1 0 PAC2 family MdcG PF10620.4 gi|327309960|ref|YP_004336857.1| - 0.036 13.5 0.0 0.053 13.0 0.0 1.3 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG PaREP1 PF05942.6 gi|327309961|ref|YP_004336858.1| - 7.4e-31 106.3 7.5 7.4e-31 106.3 5.2 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Sel1 PF08238.7 gi|327309961|ref|YP_004336858.1| - 0.0094 16.5 0.1 0.033 14.8 0.1 2.0 1 0 0 1 1 1 1 Sel1 repeat TPR_11 PF13414.1 gi|327309961|ref|YP_004336858.1| - 0.014 15.0 0.1 0.035 13.7 0.1 1.7 1 1 0 1 1 1 0 TPR repeat TPR_17 PF13431.1 gi|327309961|ref|YP_004336858.1| - 0.044 13.9 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF4398 PF14346.1 gi|327309961|ref|YP_004336858.1| - 0.37 10.8 4.0 0.39 10.7 1.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) Antitoxin-MazE PF04014.13 gi|327309962|ref|YP_004336859.1| - 4.7e-09 35.7 0.1 7.3e-09 35.1 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Lactamase_B_2 PF12706.2 gi|327309963|ref|YP_004336860.1| - 1.5e-26 93.1 0.0 1.8e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|327309963|ref|YP_004336860.1| - 8.2e-14 51.7 1.5 1.3e-12 47.7 1.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|327309963|ref|YP_004336860.1| - 0.002 17.8 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ABC_tran PF00005.22 gi|327309964|ref|YP_004336861.1| - 1.3e-34 119.4 0.0 1.7e-34 119.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327309964|ref|YP_004336861.1| - 2.8e-11 43.9 0.0 4.4e-05 23.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|327309964|ref|YP_004336861.1| - 4.8e-08 32.8 0.1 2.4e-07 30.6 0.0 2.2 2 0 0 2 2 2 1 TOBE domain AAA_16 PF13191.1 gi|327309964|ref|YP_004336861.1| - 4.6e-05 23.4 1.6 0.0002 21.4 1.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|327309964|ref|YP_004336861.1| - 6.7e-05 22.1 0.0 0.0067 15.5 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|327309964|ref|YP_004336861.1| - 7.2e-05 22.1 0.0 0.0011 18.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|327309964|ref|YP_004336861.1| - 0.00012 21.8 0.1 0.00051 19.7 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain TOBE PF03459.12 gi|327309964|ref|YP_004336861.1| - 0.0002 21.4 0.0 0.0085 16.1 0.0 2.8 3 0 0 3 3 2 1 TOBE domain AAA_17 PF13207.1 gi|327309964|ref|YP_004336861.1| - 0.00027 21.7 0.1 0.0021 18.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|327309964|ref|YP_004336861.1| - 0.00087 19.1 0.0 0.0035 17.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|327309964|ref|YP_004336861.1| - 0.0019 17.8 1.4 0.0075 15.9 0.1 2.3 2 1 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|327309964|ref|YP_004336861.1| - 0.0032 17.5 0.1 0.029 14.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|327309964|ref|YP_004336861.1| - 0.0052 17.0 0.1 0.0087 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|327309964|ref|YP_004336861.1| - 0.0062 16.7 0.1 0.052 13.7 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|327309964|ref|YP_004336861.1| - 0.0068 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|327309964|ref|YP_004336861.1| - 0.0075 15.7 0.0 0.017 14.5 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|327309964|ref|YP_004336861.1| - 0.0087 16.4 0.0 0.024 14.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|327309964|ref|YP_004336861.1| - 0.013 15.0 0.0 0.14 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|327309964|ref|YP_004336861.1| - 0.014 15.0 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase T2SE PF00437.15 gi|327309964|ref|YP_004336861.1| - 0.016 14.0 0.0 0.029 13.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|327309964|ref|YP_004336861.1| - 0.02 14.5 0.0 0.045 13.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|327309964|ref|YP_004336861.1| - 0.021 15.3 0.0 0.036 14.5 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_28 PF13521.1 gi|327309964|ref|YP_004336861.1| - 0.022 14.7 0.1 0.08 12.9 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|327309964|ref|YP_004336861.1| - 0.025 14.1 0.0 0.066 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|327309964|ref|YP_004336861.1| - 0.028 13.5 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF148 PF02520.12 gi|327309964|ref|YP_004336861.1| - 0.028 14.1 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF148 Mg_chelatase PF01078.16 gi|327309964|ref|YP_004336861.1| - 0.032 13.4 0.0 0.14 11.3 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI cobW PF02492.14 gi|327309964|ref|YP_004336861.1| - 0.032 13.6 0.0 0.064 12.7 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|327309964|ref|YP_004336861.1| - 0.055 12.8 0.1 2 7.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|327309964|ref|YP_004336861.1| - 0.098 12.5 0.0 0.24 11.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|327309964|ref|YP_004336861.1| - 0.11 12.1 0.0 0.62 9.7 0.0 2.2 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DLIC PF05783.6 gi|327309964|ref|YP_004336861.1| - 0.2 10.3 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) BPD_transp_1 PF00528.17 gi|327309965|ref|YP_004336862.1| - 8.4e-18 64.5 48.0 5.5e-10 39.0 11.5 3.1 2 2 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|327309966|ref|YP_004336863.1| - 3.9e-28 99.0 1.7 9.1e-28 97.8 1.2 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|327309966|ref|YP_004336863.1| - 7e-25 88.3 1.2 1e-24 87.7 0.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|327309966|ref|YP_004336863.1| - 0.0023 17.6 0.1 1.1 8.8 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein DUF1628 PF07790.6 gi|327309966|ref|YP_004336863.1| - 0.0042 17.8 1.5 0.012 16.3 1.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF929 PF06053.6 gi|327309966|ref|YP_004336863.1| - 0.012 14.7 1.0 0.023 13.7 0.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF929) SBP_bac_6 PF13343.1 gi|327309966|ref|YP_004336863.1| - 0.038 13.2 0.0 0.16 11.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein SoxE PF06525.6 gi|327309966|ref|YP_004336863.1| - 0.047 12.9 2.5 0.087 12.0 1.7 1.4 1 0 0 1 1 1 0 Sulfocyanin (SoxE) DUF1510 PF07423.6 gi|327309966|ref|YP_004336863.1| - 0.14 11.5 0.4 0.21 10.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) SpoIIIAH PF12685.2 gi|327309966|ref|YP_004336863.1| - 0.14 11.6 0.2 0.23 10.9 0.1 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein GspL_C PF12693.2 gi|327309966|ref|YP_004336863.1| - 0.2 11.4 2.9 3.9 7.2 0.0 3.0 3 0 0 3 3 3 0 GspL periplasmic domain DUF3357 PF11837.3 gi|327309966|ref|YP_004336863.1| - 0.27 11.1 1.7 0.48 10.2 1.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) NVEALA PF14055.1 gi|327309966|ref|YP_004336863.1| - 0.34 10.6 3.1 0.85 9.3 2.1 1.7 1 0 0 1 1 1 0 NVEALA protein Fer4 PF00037.22 gi|327309967|ref|YP_004336864.1| - 1.9e-25 87.3 34.2 1.3e-08 34.0 0.6 5.5 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|327309967|ref|YP_004336864.1| - 3.3e-21 75.4 28.9 2.8e-11 43.6 4.7 3.9 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327309967|ref|YP_004336864.1| - 2.5e-18 65.0 39.8 9.2e-07 28.4 0.4 5.7 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|327309967|ref|YP_004336864.1| - 1e-14 54.0 38.3 1.5e-07 31.0 5.9 4.4 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|327309967|ref|YP_004336864.1| - 2e-14 53.5 28.8 1.6e-06 28.2 6.1 4.2 3 2 1 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327309967|ref|YP_004336864.1| - 3.9e-13 49.9 26.3 9e-05 23.1 0.5 4.8 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|327309967|ref|YP_004336864.1| - 3e-12 45.7 37.5 5.5e-05 22.8 2.1 5.4 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|327309967|ref|YP_004336864.1| - 1.3e-11 44.1 26.7 6.9e-08 32.2 4.8 3.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327309967|ref|YP_004336864.1| - 1.4e-11 44.6 20.6 0.008 16.5 0.7 5.5 5 0 0 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|327309967|ref|YP_004336864.1| - 3.3e-10 39.8 27.6 0.00057 19.8 8.1 4.6 3 1 2 5 5 5 5 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327309967|ref|YP_004336864.1| - 6e-08 32.9 29.2 0.014 15.7 0.1 5.1 3 2 3 6 6 6 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|327309967|ref|YP_004336864.1| - 1.4e-05 24.9 55.8 0.0051 17.0 2.7 6.0 7 0 0 7 7 5 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|327309967|ref|YP_004336864.1| - 0.0028 17.5 14.4 0.012 15.4 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327309967|ref|YP_004336864.1| - 0.003 18.0 59.0 0.017 15.6 2.9 5.8 7 0 0 7 7 5 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|327309967|ref|YP_004336864.1| - 0.01 16.3 28.4 0.37 11.3 0.4 5.0 4 1 1 5 5 4 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|327309967|ref|YP_004336864.1| - 0.027 14.8 29.2 0.64 10.4 1.9 5.5 5 0 0 5 5 5 0 4Fe-4S single cluster domain DUF866 PF05907.8 gi|327309967|ref|YP_004336864.1| - 0.038 13.4 0.4 0.092 12.2 0.3 1.6 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) SprT-like PF10263.4 gi|327309967|ref|YP_004336864.1| - 0.19 11.3 0.8 0.47 10.0 0.2 1.9 1 1 0 1 1 1 0 SprT-like family DUF3268 PF11672.3 gi|327309967|ref|YP_004336864.1| - 0.39 10.8 0.1 0.39 10.8 0.1 2.6 3 0 0 3 3 2 0 Protein of unknown function (DUF3268) Zn-ribbon_8 PF09723.5 gi|327309967|ref|YP_004336864.1| - 0.52 10.3 0.1 0.52 10.3 0.0 5.1 6 1 0 6 6 3 0 Zinc ribbon domain Nitrate_red_del PF02613.10 gi|327309968|ref|YP_004336865.1| - 1.7e-12 47.3 0.1 3.8e-12 46.1 0.1 1.5 1 0 0 1 1 1 1 Nitrate reductase delta subunit Fer4_11 PF13247.1 gi|327309969|ref|YP_004336866.1| - 5.5e-25 87.1 6.1 5.5e-25 87.1 4.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327309969|ref|YP_004336866.1| - 4.6e-18 65.3 10.0 2.2e-08 34.3 0.1 3.4 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|327309969|ref|YP_004336866.1| - 6.1e-13 48.8 20.7 1.1e-05 25.6 2.6 3.9 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|327309969|ref|YP_004336866.1| - 2.6e-12 45.7 28.1 4.9e-07 29.0 3.8 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|327309969|ref|YP_004336866.1| - 2.7e-10 39.8 21.2 2.8e-05 23.8 8.4 3.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327309969|ref|YP_004336866.1| - 4.8e-09 35.7 34.9 7.2e-06 25.6 3.3 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|327309969|ref|YP_004336866.1| - 1.9e-08 33.7 33.9 1.9e-05 24.2 2.2 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|327309969|ref|YP_004336866.1| - 8.8e-08 32.1 35.1 0.036 14.6 4.0 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|327309969|ref|YP_004336866.1| - 5.5e-07 29.5 20.6 0.0016 18.3 0.6 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|327309969|ref|YP_004336866.1| - 6.7e-07 29.1 35.1 0.00019 21.5 2.3 4.5 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|327309969|ref|YP_004336866.1| - 0.00012 22.7 21.0 0.17 12.6 3.5 4.3 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|327309969|ref|YP_004336866.1| - 0.00017 21.8 21.5 0.0087 16.3 0.8 4.1 3 1 2 5 5 5 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327309969|ref|YP_004336866.1| - 0.00043 20.0 8.3 0.00043 20.0 5.7 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327309969|ref|YP_004336866.1| - 1.1 9.7 28.0 0.23 11.8 2.6 4.2 3 1 2 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|327309969|ref|YP_004336866.1| - 3.7 8.1 20.5 1.1 9.8 3.8 3.7 3 1 0 3 3 3 0 4Fe-4S single cluster domain Molydop_binding PF01568.16 gi|327309970|ref|YP_004336867.1| - 1.4e-17 63.5 0.2 7.2e-17 61.1 0.0 2.3 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.4 gi|327309970|ref|YP_004336867.1| - 0.00099 18.9 1.4 0.0026 17.6 1.0 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|327309970|ref|YP_004336867.1| - 0.016 14.3 0.9 0.034 13.3 0.6 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NrfD PF03916.9 gi|327309971|ref|YP_004336868.1| - 7.7e-22 78.1 37.6 1.4e-21 77.2 25.9 1.5 1 1 0 1 1 1 1 Polysulphide reductase, NrfD FliG_M PF14841.1 gi|327309972|ref|YP_004336869.1| - 0.0097 15.8 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 1 FliG middle domain Cyanate_lyase PF02560.9 gi|327309972|ref|YP_004336869.1| - 0.031 13.8 0.0 0.067 12.7 0.0 1.6 1 1 0 1 1 1 0 Cyanate lyase C-terminal domain Lactamase_B PF00753.22 gi|327309974|ref|YP_004336871.1| - 6.7e-23 81.3 1.6 1.3e-22 80.4 0.9 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|327309974|ref|YP_004336871.1| - 0.00098 18.7 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Antitoxin-MazE PF04014.13 gi|327309975|ref|YP_004336872.1| - 1.1e-15 56.9 0.5 1.5e-15 56.4 0.3 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF2118 PF09891.4 gi|327309975|ref|YP_004336872.1| - 0.00063 19.4 0.1 0.0007 19.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) DUF1905 PF08922.6 gi|327309975|ref|YP_004336872.1| - 0.046 13.3 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) PIN PF01850.16 gi|327309976|ref|YP_004336873.1| - 2.9e-14 53.4 0.7 3.3e-14 53.2 0.5 1.0 1 0 0 1 1 1 1 PIN domain DUF608 PF04685.8 gi|327309977|ref|YP_004336874.1| - 1.2e-66 224.8 0.0 1.5e-66 224.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF608 GBA2_N PF12215.3 gi|327309977|ref|YP_004336874.1| - 2.3e-45 155.0 0.0 3.2e-45 154.5 0.0 1.2 1 0 0 1 1 1 1 beta-Glucocerebrosidase 2 N terminal Bac_rhamnosid PF05592.6 gi|327309977|ref|YP_004336874.1| - 0.0021 16.3 0.0 0.0054 15.0 0.0 1.5 2 0 0 2 2 2 1 Bacterial alpha-L-rhamnosidase S1-like PF14444.1 gi|327309977|ref|YP_004336874.1| - 0.031 14.0 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 S1-like Lambda_CIII PF02061.11 gi|327309977|ref|YP_004336874.1| - 0.057 13.3 0.0 9.3 6.3 0.0 2.8 3 0 0 3 3 3 0 Lambda Phage CIII PaREP1 PF05942.6 gi|327309978|ref|YP_004336875.1| - 1.2e-33 115.4 1.6 1.2e-33 115.4 1.1 2.1 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family FAD_binding_3 PF01494.14 gi|327309978|ref|YP_004336875.1| - 0.08 11.9 0.0 0.12 11.4 0.0 1.3 1 1 0 1 1 1 0 FAD binding domain OrfB_Zn_ribbon PF07282.6 gi|327309981|ref|YP_004336878.1| - 4.8e-11 42.1 0.1 9.2e-11 41.2 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|327309981|ref|YP_004336878.1| - 0.00014 21.5 3.4 0.00028 20.5 2.4 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|327309981|ref|YP_004336878.1| - 0.0041 16.8 0.8 0.0066 16.1 0.6 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-TFIIB PF13453.1 gi|327309981|ref|YP_004336878.1| - 0.0089 15.1 0.2 1.8 7.8 0.0 2.4 2 0 0 2 2 2 1 Transcription factor zinc-finger DUF1272 PF06906.6 gi|327309981|ref|YP_004336878.1| - 0.014 15.2 0.2 0.16 11.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-FPG_IleRS PF06827.9 gi|327309981|ref|YP_004336878.1| - 0.014 15.0 2.9 0.031 13.9 2.0 1.6 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|327309981|ref|YP_004336878.1| - 0.026 14.3 0.1 0.047 13.4 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|327309981|ref|YP_004336878.1| - 0.054 13.2 0.2 0.096 12.4 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons TRM PF02005.11 gi|327309981|ref|YP_004336878.1| - 0.081 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase zf-ribbon_3 PF13248.1 gi|327309981|ref|YP_004336878.1| - 0.097 11.9 0.6 0.21 10.8 0.4 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|327309981|ref|YP_004336878.1| - 0.25 10.8 2.3 1.2 8.7 0.2 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-RING_3 PF14369.1 gi|327309981|ref|YP_004336878.1| - 0.4 10.7 2.4 2.5 8.1 0.1 2.4 1 1 1 2 2 2 0 zinc-finger zf-IS66 PF13005.2 gi|327309981|ref|YP_004336878.1| - 0.92 9.5 3.8 6.2 6.8 2.8 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|327309981|ref|YP_004336878.1| - 0.97 9.4 3.6 8 6.4 0.1 3.0 2 1 1 3 3 3 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|327309981|ref|YP_004336878.1| - 3.1 7.9 6.7 1.8 8.6 0.5 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 KaiC PF06745.8 gi|327309982|ref|YP_004336879.1| - 5.2e-15 55.1 0.0 6.9e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|327309982|ref|YP_004336879.1| - 6.2e-12 45.3 0.0 1.1e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|327309982|ref|YP_004336879.1| - 0.00026 20.4 0.1 0.00076 18.9 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein Elong_Iki1 PF10483.4 gi|327309982|ref|YP_004336879.1| - 0.00097 18.5 0.0 0.0013 18.1 0.0 1.1 1 0 0 1 1 1 1 Elongator subunit Iki1 AAA_22 PF13401.1 gi|327309982|ref|YP_004336879.1| - 0.0055 16.8 0.0 0.024 14.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|327309982|ref|YP_004336879.1| - 0.0093 15.5 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 PhoH PF02562.11 gi|327309982|ref|YP_004336879.1| - 0.03 13.5 0.4 0.064 12.4 0.1 1.8 2 1 0 2 2 2 0 PhoH-like protein NACHT PF05729.7 gi|327309982|ref|YP_004336879.1| - 0.045 13.3 0.0 0.15 11.7 0.0 1.9 3 0 0 3 3 3 0 NACHT domain AAA_18 PF13238.1 gi|327309982|ref|YP_004336879.1| - 0.046 14.0 0.0 2.4 8.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|327309982|ref|YP_004336879.1| - 0.054 13.7 0.2 0.22 11.7 0.1 2.1 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|327309982|ref|YP_004336879.1| - 0.054 12.9 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.1 gi|327309982|ref|YP_004336879.1| - 0.18 11.5 0.8 0.43 10.3 0.2 2.0 2 1 0 2 2 2 0 Part of AAA domain Glyco_hydro_47 PF01532.15 gi|327309982|ref|YP_004336879.1| - 0.21 10.1 0.0 0.25 9.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 47 Radical_SAM PF04055.16 gi|327309983|ref|YP_004336880.1| - 5.9e-16 59.0 0.0 2e-15 57.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.6 gi|327309983|ref|YP_004336880.1| - 5.7e-06 26.0 0.4 0.089 12.3 0.0 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) adh_short PF00106.20 gi|327309984|ref|YP_004336881.1| - 1.1e-34 119.7 0.1 1.7e-34 119.1 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|327309984|ref|YP_004336881.1| - 2.7e-26 92.7 0.0 3.4e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|327309984|ref|YP_004336881.1| - 4.3e-12 46.0 0.0 7.5e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|327309984|ref|YP_004336881.1| - 0.0021 17.5 0.2 0.0034 16.8 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family HAD PF12710.2 gi|327309984|ref|YP_004336881.1| - 0.047 13.8 0.1 0.12 12.4 0.0 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Methyltransf_25 PF13649.1 gi|327309984|ref|YP_004336881.1| - 0.061 13.6 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PaREP1 PF05942.6 gi|327309986|ref|YP_004336883.1| - 3.9e-26 91.1 0.7 4.7e-26 90.9 0.5 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.1 gi|327309986|ref|YP_004336883.1| - 0.1 12.6 0.5 0.17 11.9 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) tRNA-synt_1 PF00133.17 gi|327309987|ref|YP_004336884.1| - 4.4e-62 209.9 0.0 4.8e-53 180.1 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|327309987|ref|YP_004336884.1| - 1.1e-29 103.2 0.6 5.1e-13 48.4 0.3 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|327309987|ref|YP_004336884.1| - 8e-15 54.9 0.5 1.9e-14 53.7 0.3 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|327309987|ref|YP_004336884.1| - 4.3e-12 45.7 0.0 8e-12 44.8 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|327309987|ref|YP_004336884.1| - 3.1e-10 39.6 0.0 8.9e-06 25.0 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain TatC PF00902.13 gi|327309988|ref|YP_004336885.1| - 3.3e-35 121.4 24.1 4.3e-35 121.0 16.7 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) HEPN PF05168.9 gi|327309989|ref|YP_004336886.1| - 1e-27 96.3 0.0 1.1e-27 96.2 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|327309990|ref|YP_004336887.1| - 8.6e-09 35.6 0.0 1.1e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain AA_permease PF00324.16 gi|327309991|ref|YP_004336888.1| - 0.062 11.6 0.4 0.067 11.5 0.2 1.0 1 0 0 1 1 1 0 Amino acid permease DUF4293 PF14126.1 gi|327309991|ref|YP_004336888.1| - 0.076 12.9 0.6 0.088 12.7 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) ABC2_membrane PF01061.19 gi|327309992|ref|YP_004336889.1| - 4.5e-30 104.3 20.6 4.5e-30 104.3 14.3 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|327309992|ref|YP_004336889.1| - 1.6e-15 56.9 14.4 1.6e-15 56.9 10.0 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|327309992|ref|YP_004336889.1| - 5.8e-08 32.1 14.6 7.4e-08 31.8 10.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|327309992|ref|YP_004336889.1| - 6.4e-06 25.2 12.9 9.9e-06 24.6 9.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|327309993|ref|YP_004336890.1| - 4.5e-27 95.0 0.0 6.5e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327309993|ref|YP_004336890.1| - 1.2e-14 55.0 0.3 2.7e-12 47.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|327309993|ref|YP_004336890.1| - 4.7e-07 30.2 0.0 3.6e-06 27.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|327309993|ref|YP_004336890.1| - 0.0002 20.5 0.0 0.022 13.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|327309993|ref|YP_004336890.1| - 0.02 14.4 0.3 0.039 13.4 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|327309993|ref|YP_004336890.1| - 0.028 14.7 2.0 0.048 13.9 1.0 1.5 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|327309993|ref|YP_004336890.1| - 0.058 12.5 0.0 0.15 11.2 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|327309993|ref|YP_004336890.1| - 0.088 13.0 1.5 0.86 9.8 0.6 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|327309993|ref|YP_004336890.1| - 0.14 12.0 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SRP54 PF00448.17 gi|327309993|ref|YP_004336890.1| - 0.15 11.4 0.1 0.29 10.5 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Cation_efflux PF01545.16 gi|327309994|ref|YP_004336891.1| - 7e-49 166.4 3.8 8.2e-49 166.1 2.6 1.0 1 0 0 1 1 1 1 Cation efflux family RHSP PF07999.6 gi|327309994|ref|YP_004336891.1| - 0.014 14.0 0.0 0.024 13.2 0.0 1.3 1 0 0 1 1 1 0 Retrotransposon hot spot protein YrhK PF14145.1 gi|327309994|ref|YP_004336891.1| - 0.36 10.5 2.9 0.68 9.6 0.3 2.3 2 0 0 2 2 2 0 YrhK-like protein MFS_1 PF07690.11 gi|327309996|ref|YP_004336893.1| - 1.8e-32 112.4 60.8 3.9e-20 71.8 21.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|327309996|ref|YP_004336893.1| - 0.002 17.9 0.2 0.65 9.8 0.1 3.1 2 0 0 2 2 2 2 MFS_1 like family NUDIX PF00293.23 gi|327309997|ref|YP_004336894.1| - 4.8e-17 61.8 0.9 5.5e-17 61.6 0.1 1.4 2 0 0 2 2 2 1 NUDIX domain Thi4 PF01946.12 gi|327309998|ref|YP_004336895.1| - 1.3e-80 269.8 0.1 1.6e-80 269.4 0.0 1.1 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|327309998|ref|YP_004336895.1| - 1.1e-15 57.4 0.5 4.8e-09 35.6 0.1 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|327309998|ref|YP_004336895.1| - 8.3e-09 35.3 0.3 2e-08 34.1 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|327309998|ref|YP_004336895.1| - 2.4e-08 33.2 3.8 5.2e-07 28.8 0.4 2.9 2 1 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.14 gi|327309998|ref|YP_004336895.1| - 3.3e-08 32.9 0.0 5.8e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|327309998|ref|YP_004336895.1| - 1.2e-07 31.1 0.1 1.8e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|327309998|ref|YP_004336895.1| - 8.9e-07 28.9 0.1 1.4e-06 28.2 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|327309998|ref|YP_004336895.1| - 9.7e-07 29.0 0.2 2.8e-06 27.5 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|327309998|ref|YP_004336895.1| - 1e-05 24.2 0.5 1.6e-05 23.5 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.19 gi|327309998|ref|YP_004336895.1| - 8.9e-05 21.7 0.2 0.00017 20.8 0.1 1.5 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.22 gi|327309998|ref|YP_004336895.1| - 0.00069 19.9 2.1 0.00078 19.8 0.1 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|327309998|ref|YP_004336895.1| - 0.0059 15.5 0.2 0.016 14.1 0.0 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.17 gi|327309998|ref|YP_004336895.1| - 0.006 15.4 0.3 0.01 14.7 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|327309998|ref|YP_004336895.1| - 0.011 15.4 1.8 0.012 15.3 0.3 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|327309998|ref|YP_004336895.1| - 0.018 15.1 0.0 0.032 14.3 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|327309998|ref|YP_004336895.1| - 0.081 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|327309998|ref|YP_004336895.1| - 0.085 11.4 0.1 0.12 10.9 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase 2-Hacid_dh_C PF02826.14 gi|327309998|ref|YP_004336895.1| - 0.091 11.9 0.0 0.19 10.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|327309999|ref|YP_004336896.1| - 3.4e-22 78.4 0.7 5.5e-22 77.7 0.5 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|327309999|ref|YP_004336896.1| - 1.2e-15 57.2 0.0 2.2e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|327309999|ref|YP_004336896.1| - 3.6e-06 27.8 2.1 6.8e-06 27.0 0.6 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Methyltransf_18 PF12847.2 gi|327309999|ref|YP_004336896.1| - 7.4e-05 23.2 0.1 0.00014 22.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain 3HCDH_N PF02737.13 gi|327309999|ref|YP_004336896.1| - 0.0049 16.5 0.6 0.0075 15.9 0.4 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_31 PF13847.1 gi|327309999|ref|YP_004336896.1| - 0.04 13.5 0.0 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain POR_N PF01855.14 gi|327310001|ref|YP_004336898.1| - 5.7e-58 196.1 0.3 9.4e-58 195.4 0.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|327310001|ref|YP_004336898.1| - 5.2e-33 114.3 0.6 1.2e-32 113.2 0.4 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|327310002|ref|YP_004336899.1| - 2e-34 118.3 0.3 8.9e-34 116.2 0.2 2.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|327310002|ref|YP_004336899.1| - 3.6e-22 78.0 0.0 6.9e-22 77.1 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Lipase_GDSL_2 PF13472.1 gi|327310002|ref|YP_004336899.1| - 0.082 13.0 0.0 0.33 11.0 0.0 2.0 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family DUF4143 PF13635.1 gi|327310003|ref|YP_004336900.1| - 0.026 14.6 0.2 0.05 13.7 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) NERD PF08378.6 gi|327310003|ref|YP_004336900.1| - 0.031 14.5 0.5 0.031 14.5 0.3 2.7 1 1 1 2 2 2 0 Nuclease-related domain Ribonuc_red_lgC PF02867.10 gi|327310003|ref|YP_004336900.1| - 0.47 8.9 3.0 0.69 8.4 2.1 1.3 1 0 0 1 1 1 0 Ribonucleotide reductase, barrel domain Amino_oxidase PF01593.19 gi|327310003|ref|YP_004336900.1| - 0.82 8.6 5.7 1.1 8.2 4.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase V_ATPase_I PF01496.14 gi|327310003|ref|YP_004336900.1| - 1.3 6.8 4.8 1.6 6.5 3.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family GBP_C PF02841.9 gi|327310003|ref|YP_004336900.1| - 4.3 6.4 9.4 6 5.9 6.5 1.2 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain FadA PF09403.5 gi|327310003|ref|YP_004336900.1| - 7.6 6.5 15.5 6.4 6.8 9.5 1.7 1 1 1 2 2 2 0 Adhesion protein FadA DUF4200 PF13863.1 gi|327310003|ref|YP_004336900.1| - 8.8 6.2 19.8 6.2 6.7 9.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Helicase_RecD PF05127.9 gi|327310004|ref|YP_004336901.1| - 3e-54 183.3 0.0 4.9e-54 182.6 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|327310004|ref|YP_004336901.1| - 1.7e-46 158.0 0.0 8.6e-46 155.7 0.0 1.9 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|327310004|ref|YP_004336901.1| - 2.6e-28 97.5 0.0 7.4e-28 96.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|327310004|ref|YP_004336901.1| - 4.7e-10 39.4 0.0 1.1e-07 31.9 0.0 2.4 2 0 0 2 2 2 2 Possible tRNA binding domain Acetyltransf_1 PF00583.19 gi|327310004|ref|YP_004336901.1| - 2.1e-06 27.6 0.6 7.6e-06 25.8 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|327310004|ref|YP_004336901.1| - 0.00019 21.5 0.1 0.00062 19.8 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain AA_permease PF00324.16 gi|327310005|ref|YP_004336902.1| - 9.5e-21 73.6 47.1 5.1e-20 71.2 32.7 2.0 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|327310005|ref|YP_004336902.1| - 9.7e-20 70.4 50.4 1.2e-19 70.1 34.9 1.1 1 0 0 1 1 1 1 Amino acid permease DAO PF01266.19 gi|327310007|ref|YP_004336904.1| - 2e-35 122.3 5.9 3.1e-35 121.7 4.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|327310007|ref|YP_004336904.1| - 1.6e-07 31.5 0.2 0.00017 21.7 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|327310007|ref|YP_004336904.1| - 3.6e-07 30.2 0.4 0.001 19.0 0.5 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|327310007|ref|YP_004336904.1| - 7.3e-06 25.9 0.3 1.7e-05 24.7 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|327310007|ref|YP_004336904.1| - 1.1e-05 24.4 1.3 1.3e-05 24.2 0.9 1.4 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|327310007|ref|YP_004336904.1| - 0.00048 20.4 0.5 0.0011 19.3 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|327310007|ref|YP_004336904.1| - 0.00052 19.1 0.5 0.00094 18.3 0.3 1.4 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.11 gi|327310007|ref|YP_004336904.1| - 0.00092 18.6 0.0 0.0015 17.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_oxidored PF12831.2 gi|327310007|ref|YP_004336904.1| - 0.0071 15.4 0.4 0.014 14.4 0.3 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|327310007|ref|YP_004336904.1| - 0.0077 15.1 0.5 1.6 7.5 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|327310007|ref|YP_004336904.1| - 0.0092 14.4 0.2 0.016 13.6 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_7 PF13241.1 gi|327310007|ref|YP_004336904.1| - 0.015 15.5 0.1 0.031 14.5 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding GIDA PF01134.17 gi|327310007|ref|YP_004336904.1| - 0.05 12.4 0.3 0.05 12.4 0.2 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.9 gi|327310007|ref|YP_004336904.1| - 0.075 12.4 0.1 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|327310007|ref|YP_004336904.1| - 0.079 12.6 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|327310007|ref|YP_004336904.1| - 0.08 12.0 1.7 0.17 10.9 0.1 2.1 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.16 gi|327310007|ref|YP_004336904.1| - 0.16 11.5 0.2 0.33 10.5 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Helicase_C_2 PF13307.1 gi|327310008|ref|YP_004336905.1| - 2.6e-25 89.3 0.0 4.4e-25 88.5 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|327310008|ref|YP_004336905.1| - 3.9e-23 81.7 0.0 5.9e-23 81.1 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|327310008|ref|YP_004336905.1| - 9e-08 31.7 0.0 2.2e-05 23.9 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|327310008|ref|YP_004336905.1| - 8.2e-06 25.7 0.0 0.00029 20.7 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|327310008|ref|YP_004336905.1| - 0.0061 16.1 0.6 0.32 10.5 0.0 3.0 2 1 1 3 3 3 1 AAA domain PhoH PF02562.11 gi|327310008|ref|YP_004336905.1| - 0.0076 15.5 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein AAA_25 PF13481.1 gi|327310008|ref|YP_004336905.1| - 0.036 13.4 0.0 0.086 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|327310008|ref|YP_004336905.1| - 0.036 14.2 0.0 13 5.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|327310008|ref|YP_004336905.1| - 0.038 13.7 4.2 0.1 12.3 0.3 2.9 3 0 0 3 3 3 0 Part of AAA domain MotA_ExbB PF01618.11 gi|327310009|ref|YP_004336906.1| - 0.42 10.2 2.1 0.57 9.8 1.4 1.1 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family Topoisom_bac PF01131.15 gi|327310010|ref|YP_004336907.1| - 1.1e-101 340.6 0.0 1.4e-101 340.2 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|327310010|ref|YP_004336907.1| - 3.1e-14 52.7 0.0 8.8e-14 51.2 0.0 1.8 2 0 0 2 2 2 1 Toprim domain SPOR PF05036.8 gi|327310010|ref|YP_004336907.1| - 0.017 15.2 0.2 0.051 13.7 0.1 1.8 1 0 0 1 1 1 0 Sporulation related domain Diphthamide_syn PF01866.12 gi|327310011|ref|YP_004336908.1| - 2.4e-23 82.8 0.0 5.5e-15 55.3 0.0 2.1 2 0 0 2 2 2 2 Putative diphthamide synthesis protein DUF87 PF01935.12 gi|327310013|ref|YP_004336910.1| - 2.1e-35 122.5 0.0 3.4e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|327310013|ref|YP_004336910.1| - 1.8e-21 76.9 0.0 9.8e-21 74.4 0.0 1.9 1 1 0 1 1 1 1 AAA-like domain T4SS-DNA_transf PF02534.9 gi|327310013|ref|YP_004336910.1| - 0.00034 19.3 0.0 0.00061 18.4 0.0 1.3 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.13 gi|327310013|ref|YP_004336910.1| - 0.0004 19.9 0.0 0.0084 15.5 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.7 gi|327310013|ref|YP_004336910.1| - 0.00098 18.6 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|327310013|ref|YP_004336910.1| - 0.0029 16.2 0.0 0.0097 14.5 0.0 1.8 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain HAS-barrel PF09378.5 gi|327310013|ref|YP_004336910.1| - 0.034 14.0 1.0 0.083 12.7 0.7 1.6 1 0 0 1 1 1 0 HAS barrel domain Helicase_RecD PF05127.9 gi|327310013|ref|YP_004336910.1| - 0.063 12.9 0.1 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Helicase Arch_ATPase PF01637.13 gi|327310014|ref|YP_004336911.1| - 2.3e-54 184.5 0.0 2.9e-54 184.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|327310014|ref|YP_004336911.1| - 0.00039 20.5 0.0 0.00088 19.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327310014|ref|YP_004336911.1| - 0.00054 20.0 0.4 0.0054 16.7 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain B12-binding PF02310.14 gi|327310014|ref|YP_004336911.1| - 0.0033 17.2 0.8 0.01 15.6 0.1 2.1 3 0 0 3 3 3 1 B12 binding domain AAA_17 PF13207.1 gi|327310014|ref|YP_004336911.1| - 0.0045 17.7 1.0 0.062 14.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain HTH_23 PF13384.1 gi|327310014|ref|YP_004336911.1| - 0.0083 15.7 1.5 0.48 10.1 0.1 3.3 3 1 0 3 3 2 1 Homeodomain-like domain AAA PF00004.24 gi|327310014|ref|YP_004336911.1| - 0.013 15.6 0.0 0.024 14.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DEDD_Tnp_IS110 PF01548.12 gi|327310014|ref|YP_004336911.1| - 0.015 14.9 0.0 0.14 11.8 0.0 2.3 2 0 0 2 2 2 0 Transposase AAA_33 PF13671.1 gi|327310014|ref|YP_004336911.1| - 0.027 14.3 0.0 0.069 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|327310014|ref|YP_004336911.1| - 0.03 13.8 0.1 0.071 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain HTH_29 PF13551.1 gi|327310014|ref|YP_004336911.1| - 0.048 13.8 0.3 0.37 10.9 0.1 2.6 2 1 0 2 2 2 0 Winged helix-turn helix AAA_10 PF12846.2 gi|327310014|ref|YP_004336911.1| - 0.06 12.7 0.0 0.15 11.4 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain DUF853 PF05872.7 gi|327310014|ref|YP_004336911.1| - 0.061 11.6 0.0 0.15 10.3 0.0 1.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF853) Zeta_toxin PF06414.7 gi|327310014|ref|YP_004336911.1| - 0.063 12.3 0.0 0.14 11.2 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin NACHT PF05729.7 gi|327310014|ref|YP_004336911.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|327310014|ref|YP_004336911.1| - 0.15 11.9 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|327310014|ref|YP_004336911.1| - 0.18 11.3 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|327310014|ref|YP_004336911.1| - 0.2 11.8 0.0 0.33 11.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase HTH_28 PF13518.1 gi|327310014|ref|YP_004336911.1| - 0.65 10.0 4.5 1.4 8.9 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain 2-Hacid_dh_C PF02826.14 gi|327310015|ref|YP_004336912.1| - 3.5e-35 120.7 0.0 6.3e-35 119.9 0.0 1.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|327310015|ref|YP_004336912.1| - 4.1e-14 52.1 0.0 5.2e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|327310015|ref|YP_004336912.1| - 0.00012 21.9 0.0 0.00024 20.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|327310015|ref|YP_004336912.1| - 0.00078 19.2 0.2 0.17 11.5 0.1 2.4 1 1 1 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|327310015|ref|YP_004336912.1| - 0.0018 18.2 1.1 0.0029 17.6 0.1 1.8 2 0 0 2 2 2 1 NADH(P)-binding AdoHcyase_NAD PF00670.16 gi|327310015|ref|YP_004336912.1| - 0.0061 16.4 0.3 0.17 11.7 0.2 2.2 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.16 gi|327310015|ref|YP_004336912.1| - 0.03 14.1 1.0 0.079 12.7 0.7 1.7 1 0 0 1 1 1 0 ThiF family ApbA PF02558.11 gi|327310015|ref|YP_004336912.1| - 0.046 13.1 0.1 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|327310015|ref|YP_004336912.1| - 0.078 13.0 0.1 0.35 10.9 0.0 2.2 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|327310015|ref|YP_004336912.1| - 0.13 11.7 3.3 0.52 9.8 0.1 2.5 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|327310016|ref|YP_004336913.1| - 8.6e-63 212.1 0.1 1.1e-62 211.8 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|327310016|ref|YP_004336913.1| - 4.2e-46 155.7 0.0 1.2e-45 154.3 0.0 1.7 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Pyr_redox_2 PF07992.9 gi|327310016|ref|YP_004336913.1| - 0.0011 18.9 0.1 0.0029 17.5 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|327310016|ref|YP_004336913.1| - 0.0015 17.7 0.2 0.0028 16.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|327310016|ref|YP_004336913.1| - 0.0034 17.4 0.2 0.0073 16.3 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase S4 PF01479.20 gi|327310016|ref|YP_004336913.1| - 0.036 13.4 0.1 0.36 10.3 0.0 2.5 2 0 0 2 2 2 0 S4 domain NAD_binding_7 PF13241.1 gi|327310016|ref|YP_004336913.1| - 0.066 13.4 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding MCM PF00493.18 gi|327310017|ref|YP_004336914.1| - 3e-138 460.1 0.1 4.1e-138 459.6 0.1 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|327310017|ref|YP_004336914.1| - 7.2e-23 81.3 0.3 2.6e-22 79.5 0.2 2.0 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|327310017|ref|YP_004336914.1| - 3e-08 33.0 0.1 4.5e-06 25.9 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|327310017|ref|YP_004336914.1| - 1.2e-06 28.1 0.1 5.6e-06 26.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.5 gi|327310017|ref|YP_004336914.1| - 4.5e-06 26.5 0.5 8.4e-06 25.6 0.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain AAA_5 PF07728.9 gi|327310017|ref|YP_004336914.1| - 2.7e-05 23.9 0.0 0.00013 21.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|327310017|ref|YP_004336914.1| - 0.0011 18.5 0.2 0.0064 15.9 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain T2SS-T3SS_pil_N PF13629.1 gi|327310017|ref|YP_004336914.1| - 0.032 13.7 1.2 1.7 8.2 0.0 2.6 2 0 0 2 2 2 0 Pilus formation protein N terminal region zinc_ribbon_2 PF13240.1 gi|327310017|ref|YP_004336914.1| - 0.033 13.6 1.1 0.13 11.8 0.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|327310017|ref|YP_004336914.1| - 0.034 13.8 0.2 0.075 12.7 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA PF00004.24 gi|327310017|ref|YP_004336914.1| - 0.044 13.9 0.0 0.17 12.0 0.0 2.1 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF3987 PF13148.1 gi|327310017|ref|YP_004336914.1| - 0.052 12.1 0.2 2.1 6.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) DUF3135 PF11333.3 gi|327310017|ref|YP_004336914.1| - 0.083 13.0 0.0 0.27 11.4 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3135) DZR PF12773.2 gi|327310017|ref|YP_004336914.1| - 0.15 11.9 0.3 0.27 11.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|327310017|ref|YP_004336914.1| - 1.5 8.7 4.7 7.4 6.5 3.2 2.0 1 1 0 1 1 1 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|327310017|ref|YP_004336914.1| - 2.1 7.6 3.3 8.3 5.7 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Sld5 PF05916.6 gi|327310018|ref|YP_004336915.1| - 0.00054 20.2 0.0 0.00076 19.7 0.0 1.2 1 0 0 1 1 1 1 GINS complex protein CBS PF00571.23 gi|327310019|ref|YP_004336916.1| - 2e-32 110.7 0.8 1.3e-15 56.9 0.0 2.1 2 0 0 2 2 2 2 CBS domain DNA_RNApol_7kD PF03604.8 gi|327310020|ref|YP_004336917.1| - 0.1 12.1 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DEAD PF00270.24 gi|327310021|ref|YP_004336918.1| - 3.7e-23 81.8 0.0 7.6e-23 80.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|327310021|ref|YP_004336918.1| - 7.1e-14 51.7 0.1 7.1e-14 51.7 0.1 3.4 5 0 0 5 5 5 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|327310021|ref|YP_004336918.1| - 2.1e-09 37.1 0.0 4.2e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.4 gi|327310021|ref|YP_004336918.1| - 3.9e-05 23.0 0.0 0.00013 21.4 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|327310021|ref|YP_004336918.1| - 7e-05 22.6 0.1 0.0003 20.6 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.18 gi|327310021|ref|YP_004336918.1| - 0.0016 17.2 0.0 0.0025 16.6 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Sec63 PF02889.11 gi|327310021|ref|YP_004336918.1| - 0.0063 15.7 0.0 0.0095 15.1 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain HHH PF00633.18 gi|327310021|ref|YP_004336918.1| - 0.1 12.3 1.1 9.6 6.1 0.0 3.5 3 0 0 3 3 3 0 Helix-hairpin-helix motif PhoH PF02562.11 gi|327310021|ref|YP_004336918.1| - 0.11 11.6 0.1 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein HTH_45 PF14947.1 gi|327310022|ref|YP_004336919.1| - 6.8e-15 54.6 0.0 7.4e-15 54.5 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|327310022|ref|YP_004336919.1| - 0.0003 20.3 0.2 0.00038 20.0 0.1 1.1 1 0 0 1 1 1 1 MarR family AAA_assoc_C PF09821.4 gi|327310022|ref|YP_004336919.1| - 0.0007 19.8 0.0 0.00077 19.7 0.0 1.0 1 0 0 1 1 1 1 C-terminal AAA-associated domain TrmB PF01978.14 gi|327310022|ref|YP_004336919.1| - 0.0011 18.5 0.0 0.0012 18.4 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.11 gi|327310022|ref|YP_004336919.1| - 0.0038 17.2 0.1 0.0049 16.8 0.0 1.2 1 0 0 1 1 1 1 HemN C-terminal domain HTH_IclR PF09339.5 gi|327310022|ref|YP_004336919.1| - 0.012 15.1 0.2 0.018 14.6 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|327310022|ref|YP_004336919.1| - 0.014 15.1 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.17 gi|327310022|ref|YP_004336919.1| - 0.015 14.9 0.0 0.02 14.6 0.0 1.1 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|327310022|ref|YP_004336919.1| - 0.044 13.8 0.0 0.047 13.8 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.4 gi|327310022|ref|YP_004336919.1| - 0.063 13.1 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Ftsk_gamma PF09397.5 gi|327310022|ref|YP_004336919.1| - 0.075 12.7 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 Ftsk gamma domain DAO PF01266.19 gi|327310022|ref|YP_004336919.1| - 0.086 11.7 0.0 0.087 11.7 0.0 1.0 1 0 0 1 1 1 0 FAD dependent oxidoreductase HTH_24 PF13412.1 gi|327310022|ref|YP_004336919.1| - 0.091 12.1 0.1 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FeoC PF09012.5 gi|327310022|ref|YP_004336919.1| - 0.13 11.9 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator PhrC_PhrF PF11131.3 gi|327310023|ref|YP_004336920.1| - 0.19 11.3 1.6 2 8.0 0.1 2.4 2 0 0 2 2 2 0 Rap-phr extracellular signalling PDT PF00800.13 gi|327310026|ref|YP_004336923.1| - 4.7e-27 94.7 0.0 5.7e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|327310026|ref|YP_004336923.1| - 1.8e-06 27.3 0.0 4.1e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 ACT domain PaREP1 PF05942.6 gi|327310028|ref|YP_004336925.1| - 5.8e-31 106.7 4.1 7.4e-31 106.3 2.9 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF1512 PF07431.7 gi|327310028|ref|YP_004336925.1| - 0.058 12.1 0.1 0.078 11.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1512) HEPN PF05168.9 gi|327310028|ref|YP_004336925.1| - 0.061 13.2 6.2 1.3 8.9 2.8 2.2 2 0 0 2 2 2 0 HEPN domain Arch_ATPase PF01637.13 gi|327310029|ref|YP_004336926.1| - 9.3e-16 58.2 0.0 3.1e-15 56.5 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|327310029|ref|YP_004336926.1| - 4e-07 30.0 0.0 8.3e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|327310029|ref|YP_004336926.1| - 3.2e-06 27.0 0.0 6.3e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327310029|ref|YP_004336926.1| - 0.00099 19.1 1.2 0.045 13.7 0.1 2.9 2 1 1 3 3 3 1 AAA ATPase domain IBR PF01485.16 gi|327310030|ref|YP_004336927.1| - 0.1 12.4 4.9 0.059 13.2 2.0 1.6 2 0 0 2 2 2 0 IBR domain AAA_21 PF13304.1 gi|327310031|ref|YP_004336928.1| - 3.1e-08 33.9 0.0 2.7e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|327310031|ref|YP_004336928.1| - 4.3e-05 23.9 0.0 5.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|327310031|ref|YP_004336928.1| - 0.00031 19.9 0.0 0.0024 16.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|327310031|ref|YP_004336928.1| - 0.012 15.1 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sipho_Gp157 PF05565.6 gi|327310032|ref|YP_004336929.1| - 0.083 12.4 0.0 0.083 12.4 0.0 2.5 2 1 1 3 3 3 0 Siphovirus Gp157 TBCA PF02970.11 gi|327310032|ref|YP_004336929.1| - 0.66 10.0 4.5 2 8.5 0.0 3.1 2 1 1 3 3 3 0 Tubulin binding cofactor A PaREP1 PF05942.6 gi|327310033|ref|YP_004336930.1| - 2.9e-31 107.7 0.1 3.7e-31 107.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF1626 PF07788.6 gi|327310039|ref|YP_004336936.1| - 0.0024 17.6 0.3 0.0044 16.7 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) Lant_dehyd_C PF04738.8 gi|327310039|ref|YP_004336936.1| - 0.013 13.8 0.2 0.015 13.5 0.1 1.1 1 0 0 1 1 1 0 Lantibiotic dehydratase, C terminus UPF0102 PF02021.12 gi|327310039|ref|YP_004336936.1| - 0.022 14.6 0.1 0.05 13.5 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 NERD PF08378.6 gi|327310039|ref|YP_004336936.1| - 0.045 14.0 0.0 0.086 13.1 0.0 1.6 1 1 0 1 1 1 0 Nuclease-related domain DUF650 PF04894.7 gi|327310041|ref|YP_004336938.1| - 9.4e-94 313.9 0.0 1.2e-93 313.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|327310041|ref|YP_004336938.1| - 4.5e-36 122.8 0.0 7.8e-36 122.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) KaiC PF06745.8 gi|327310042|ref|YP_004336939.1| - 2.5e-16 59.4 0.0 3.1e-15 55.9 0.0 2.2 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|327310042|ref|YP_004336939.1| - 8.3e-12 44.9 0.9 3.9e-11 42.7 0.1 2.4 2 1 1 3 3 3 1 AAA domain GvpD PF07088.6 gi|327310042|ref|YP_004336939.1| - 2e-10 39.5 0.0 0.00014 20.3 0.0 2.2 1 1 0 2 2 2 2 GvpD gas vesicle protein AAA_19 PF13245.1 gi|327310042|ref|YP_004336939.1| - 5.6e-08 32.4 0.0 2e-07 30.6 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|327310042|ref|YP_004336939.1| - 3.2e-06 27.3 0.0 8.9e-06 25.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|327310042|ref|YP_004336939.1| - 1e-05 25.2 0.0 2.1e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|327310042|ref|YP_004336939.1| - 1.6e-05 25.1 0.0 8.7e-05 22.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|327310042|ref|YP_004336939.1| - 0.00013 22.0 0.0 0.00025 21.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|327310042|ref|YP_004336939.1| - 0.00093 18.6 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|327310042|ref|YP_004336939.1| - 0.00099 19.9 0.1 0.0028 18.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|327310042|ref|YP_004336939.1| - 0.001 18.8 0.0 0.0027 17.4 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_24 PF13479.1 gi|327310042|ref|YP_004336939.1| - 0.0011 18.6 0.2 0.0032 17.0 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|327310042|ref|YP_004336939.1| - 0.002 17.6 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_14 PF13173.1 gi|327310042|ref|YP_004336939.1| - 0.0051 16.6 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|327310042|ref|YP_004336939.1| - 0.0085 15.1 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) CbiA PF01656.18 gi|327310042|ref|YP_004336939.1| - 0.0093 15.3 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain RNA_helicase PF00910.17 gi|327310042|ref|YP_004336939.1| - 0.018 15.2 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|327310042|ref|YP_004336939.1| - 0.02 15.1 0.0 0.038 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|327310042|ref|YP_004336939.1| - 0.022 14.6 0.1 0.16 11.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_31 PF13614.1 gi|327310042|ref|YP_004336939.1| - 0.024 14.5 0.0 0.052 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|327310042|ref|YP_004336939.1| - 0.026 12.9 0.0 0.032 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|327310042|ref|YP_004336939.1| - 0.031 13.4 0.0 4.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RecA PF00154.16 gi|327310042|ref|YP_004336939.1| - 0.035 13.1 0.0 0.056 12.5 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_28 PF13521.1 gi|327310042|ref|YP_004336939.1| - 0.045 13.6 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 1 0 AAA domain RuvB_N PF05496.7 gi|327310042|ref|YP_004336939.1| - 0.046 12.7 0.1 0.28 10.1 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_11 PF13086.1 gi|327310042|ref|YP_004336939.1| - 0.047 13.2 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|327310042|ref|YP_004336939.1| - 0.055 12.7 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein MobB PF03205.9 gi|327310042|ref|YP_004336939.1| - 0.08 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|327310042|ref|YP_004336939.1| - 0.08 12.3 0.0 0.17 11.2 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|327310042|ref|YP_004336939.1| - 0.092 13.0 0.1 0.13 12.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|327310042|ref|YP_004336939.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DnaB_C PF03796.10 gi|327310042|ref|YP_004336939.1| - 0.13 11.1 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_30 PF13604.1 gi|327310042|ref|YP_004336939.1| - 0.17 11.4 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|327310042|ref|YP_004336939.1| - 0.17 10.7 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Radical_SAM PF04055.16 gi|327310043|ref|YP_004336940.1| - 2.1e-09 37.7 0.0 3.3e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|327310043|ref|YP_004336940.1| - 2.7 7.4 4.5 8.7 5.7 3.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) HAD_2 PF13419.1 gi|327310044|ref|YP_004336941.1| - 4.1e-22 79.2 0.1 4.9e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|327310044|ref|YP_004336941.1| - 7.4e-11 41.6 0.0 1.2e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|327310044|ref|YP_004336941.1| - 7.7e-09 36.2 0.0 2.4e-08 34.6 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|327310044|ref|YP_004336941.1| - 0.00014 22.1 0.2 0.00021 21.5 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase RHH_1 PF01402.16 gi|327310045|ref|YP_004336942.1| - 0.00011 21.9 0.9 0.00023 20.9 0.3 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_4 PF13467.1 gi|327310045|ref|YP_004336942.1| - 0.00018 21.3 0.0 0.00025 20.8 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_3 PF12651.2 gi|327310045|ref|YP_004336942.1| - 0.13 12.0 1.0 0.34 10.6 0.1 2.1 3 1 0 3 3 3 0 Ribbon-helix-helix domain PIN PF01850.16 gi|327310046|ref|YP_004336943.1| - 3.8e-16 59.5 0.2 4.6e-16 59.2 0.2 1.1 1 0 0 1 1 1 1 PIN domain Glyco_hydro_38C PF07748.8 gi|327310047|ref|YP_004336944.1| - 3.2e-63 214.1 0.0 4e-63 213.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Glyco_hydro_38 PF01074.17 gi|327310047|ref|YP_004336944.1| - 5.1e-62 209.6 0.0 7.4e-62 209.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Alpha-mann_mid PF09261.6 gi|327310047|ref|YP_004336944.1| - 3.2e-17 62.5 0.0 6.3e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 Alpha mannosidase, middle domain Amidohydro_1 PF01979.15 gi|327310048|ref|YP_004336945.1| - 3e-20 73.1 0.6 4e-20 72.7 0.4 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|327310048|ref|YP_004336945.1| - 3.1e-16 60.2 19.6 5.5e-16 59.4 13.6 1.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|327310048|ref|YP_004336945.1| - 4.1e-08 32.9 0.0 1.1e-07 31.5 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|327310048|ref|YP_004336945.1| - 0.00064 19.0 6.3 0.0064 15.7 0.1 2.9 2 1 0 3 3 3 2 Amidohydrolase family DUF608 PF04685.8 gi|327310049|ref|YP_004336946.1| - 4.3e-87 292.1 0.0 6.3e-87 291.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF608 GBA2_N PF12215.3 gi|327310049|ref|YP_004336946.1| - 5.6e-38 130.7 0.0 7.6e-38 130.3 0.0 1.1 1 0 0 1 1 1 1 beta-Glucocerebrosidase 2 N terminal MR_MLE_C PF13378.1 gi|327310050|ref|YP_004336947.1| - 4.7e-19 68.3 0.0 8.2e-19 67.6 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|327310050|ref|YP_004336947.1| - 5.3e-13 49.2 0.0 1.1e-12 48.2 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|327310050|ref|YP_004336947.1| - 7.4e-10 38.8 0.0 1.5e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FCD PF07729.7 gi|327310051|ref|YP_004336948.1| - 9.8e-20 71.1 1.6 9.8e-20 71.1 1.1 1.7 2 0 0 2 2 2 1 FCD domain GntR PF00392.16 gi|327310051|ref|YP_004336948.1| - 8.6e-15 53.9 0.1 2.1e-14 52.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|327310051|ref|YP_004336948.1| - 0.0075 16.5 0.0 0.02 15.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|327310051|ref|YP_004336948.1| - 0.02 14.2 0.0 0.08 12.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|327310051|ref|YP_004336948.1| - 0.025 14.2 0.0 0.075 12.7 0.0 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|327310051|ref|YP_004336948.1| - 0.045 13.2 0.0 0.096 12.1 0.0 1.8 1 1 0 1 1 1 0 TFIIE alpha subunit GD_AH_C PF04295.8 gi|327310052|ref|YP_004336949.1| - 1.1e-124 416.0 0.0 1.3e-124 415.9 0.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.7 gi|327310053|ref|YP_004336950.1| - 6.6e-17 61.6 1.3 9e-17 61.2 0.9 1.2 1 0 0 1 1 1 1 SAF domain SET PF00856.23 gi|327310053|ref|YP_004336950.1| - 0.047 14.0 0.2 28 4.9 0.0 3.2 3 1 1 4 4 4 0 SET domain CbiD PF01888.12 gi|327310053|ref|YP_004336950.1| - 0.13 11.2 0.2 0.15 11.0 0.2 1.0 1 0 0 1 1 1 0 CbiD Aldedh PF00171.17 gi|327310054|ref|YP_004336951.1| - 4.8e-152 506.5 0.1 5.5e-152 506.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF4365 PF14280.1 gi|327310054|ref|YP_004336951.1| - 0.1 12.3 0.0 1.9 8.1 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4365) adh_short PF00106.20 gi|327310055|ref|YP_004336952.1| - 1.3e-20 73.9 0.1 1.7e-20 73.5 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|327310055|ref|YP_004336952.1| - 2.6e-17 63.4 0.0 3.4e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|327310055|ref|YP_004336952.1| - 0.00011 21.9 0.5 0.00021 21.0 0.1 1.6 2 0 0 2 2 2 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|327310055|ref|YP_004336952.1| - 0.0004 20.1 0.4 0.0004 20.1 0.3 1.7 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2-Hacid_dh_C PF02826.14 gi|327310055|ref|YP_004336952.1| - 0.0079 15.3 0.2 0.016 14.3 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|327310055|ref|YP_004336952.1| - 0.0084 15.6 0.3 0.026 14.0 0.1 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Epimerase PF01370.16 gi|327310055|ref|YP_004336952.1| - 0.021 14.2 0.1 0.041 13.3 0.1 1.5 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Oxidored_nitro PF00148.14 gi|327310055|ref|YP_004336952.1| - 0.027 13.0 0.0 0.029 12.9 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase SGL PF08450.7 gi|327310056|ref|YP_004336953.1| - 2.2e-73 246.6 0.0 2.5e-73 246.4 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolaconase/LRE-like region Str_synth PF03088.11 gi|327310056|ref|YP_004336953.1| - 0.002 18.1 0.0 0.039 13.9 0.0 2.7 3 0 0 3 3 3 1 Strictosidine synthase Arylesterase PF01731.15 gi|327310056|ref|YP_004336953.1| - 0.0046 16.9 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 Arylesterase Reg_prop PF07494.6 gi|327310056|ref|YP_004336953.1| - 0.013 15.4 0.1 6 7.2 0.0 3.2 2 0 0 2 2 2 0 Two component regulator propeller NHL PF01436.16 gi|327310056|ref|YP_004336953.1| - 0.18 11.8 0.9 0.62 10.1 0.0 2.4 3 0 0 3 3 3 0 NHL repeat DUF3784 PF12650.2 gi|327310057|ref|YP_004336954.1| - 0.09 12.7 1.1 0.098 12.6 0.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF1206 PF06724.6 gi|327310057|ref|YP_004336954.1| - 0.33 10.7 4.5 7.2 6.4 0.0 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) YjgP_YjgQ PF03739.9 gi|327310057|ref|YP_004336954.1| - 2.4 6.8 5.9 2.5 6.7 4.1 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF454 PF04304.8 gi|327310057|ref|YP_004336954.1| - 8 6.5 6.5 10 6.2 4.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF454) BPD_transp_1 PF00528.17 gi|327310058|ref|YP_004336955.1| - 9.2e-23 80.7 17.3 9.2e-23 80.7 12.0 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|327310058|ref|YP_004336955.1| - 5e-05 22.5 1.4 5e-05 22.5 1.0 2.5 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Tox-WTIP PF15654.1 gi|327310058|ref|YP_004336955.1| - 0.055 13.1 1.5 0.15 11.7 0.2 2.5 2 0 0 2 2 2 0 Toxin with a conserved tryptophan and TIP tripeptide motif BPD_transp_1 PF00528.17 gi|327310059|ref|YP_004336956.1| - 6.4e-34 117.0 15.5 6.4e-34 117.0 10.8 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|327310060|ref|YP_004336957.1| - 1e-34 119.9 14.8 1.6e-33 116.1 10.3 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.7 gi|327310060|ref|YP_004336957.1| - 0.086 12.1 0.5 3.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system TrbC PF04956.8 gi|327310060|ref|YP_004336957.1| - 0.83 9.6 11.9 4.7 7.2 0.5 2.7 2 0 0 2 2 2 0 TrbC/VIRB2 family TMEM154 PF15102.1 gi|327310060|ref|YP_004336957.1| - 7.7 6.2 6.7 12 5.5 4.6 1.3 1 0 0 1 1 1 0 TMEM154 protein family ABC_tran PF00005.22 gi|327310062|ref|YP_004336959.1| - 4.6e-32 111.1 0.0 6.4e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310062|ref|YP_004336959.1| - 1.2e-07 32.0 0.0 0.00021 21.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain oligo_HPY PF08352.7 gi|327310062|ref|YP_004336959.1| - 3.1e-05 24.2 0.0 5.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_10 PF12846.2 gi|327310062|ref|YP_004336959.1| - 0.00043 19.8 0.0 0.44 9.9 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|327310062|ref|YP_004336959.1| - 0.00082 19.4 0.2 0.0014 18.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|327310062|ref|YP_004336959.1| - 0.0016 18.5 0.3 0.013 15.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|327310062|ref|YP_004336959.1| - 0.0027 17.2 0.3 0.0058 16.1 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain KaiC PF06745.8 gi|327310062|ref|YP_004336959.1| - 0.011 14.9 0.1 0.018 14.1 0.1 1.4 1 0 0 1 1 1 0 KaiC T2SE PF00437.15 gi|327310062|ref|YP_004336959.1| - 0.055 12.3 0.1 0.089 11.6 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|327310062|ref|YP_004336959.1| - 0.055 12.8 0.1 0.46 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Gtr1_RagA PF04670.7 gi|327310062|ref|YP_004336959.1| - 0.066 12.3 0.0 0.092 11.8 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region UPF0079 PF02367.12 gi|327310062|ref|YP_004336959.1| - 0.074 12.6 0.5 0.18 11.4 0.2 1.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 FtsK_SpoIIIE PF01580.13 gi|327310062|ref|YP_004336959.1| - 0.088 12.2 0.1 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|327310062|ref|YP_004336959.1| - 0.089 13.6 1.0 0.24 12.2 0.3 1.8 2 1 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|327310062|ref|YP_004336959.1| - 0.095 13.0 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|327310062|ref|YP_004336959.1| - 0.1 12.3 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|327310062|ref|YP_004336959.1| - 0.11 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|327310062|ref|YP_004336959.1| - 0.12 12.0 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain PEPCK_ATP PF01293.15 gi|327310062|ref|YP_004336959.1| - 0.14 10.6 0.0 0.2 10.1 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase NB-ARC PF00931.17 gi|327310062|ref|YP_004336959.1| - 0.22 10.3 0.6 0.34 9.7 0.4 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|327310063|ref|YP_004336960.1| - 1.8e-28 99.5 0.0 2.4e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|327310063|ref|YP_004336960.1| - 5.8e-18 65.0 0.0 1e-17 64.2 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|327310063|ref|YP_004336960.1| - 4.8e-13 49.7 0.0 1.2e-09 38.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|327310063|ref|YP_004336960.1| - 4.9e-06 25.9 0.0 8.7e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|327310063|ref|YP_004336960.1| - 4.9e-05 22.6 0.0 0.03 13.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|327310063|ref|YP_004336960.1| - 0.00011 21.7 0.2 0.31 10.4 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|327310063|ref|YP_004336960.1| - 0.00055 19.9 0.3 0.00091 19.2 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain APS_kinase PF01583.15 gi|327310063|ref|YP_004336960.1| - 0.00063 19.4 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.1 gi|327310063|ref|YP_004336960.1| - 0.0009 20.0 0.0 0.0015 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|327310063|ref|YP_004336960.1| - 0.0014 18.7 0.0 0.042 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|327310063|ref|YP_004336960.1| - 0.006 16.2 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|327310063|ref|YP_004336960.1| - 0.0064 16.6 0.1 0.035 14.2 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|327310063|ref|YP_004336960.1| - 0.0073 16.1 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain PRK PF00485.13 gi|327310063|ref|YP_004336960.1| - 0.008 15.7 0.0 0.033 13.7 0.0 1.8 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|327310063|ref|YP_004336960.1| - 0.011 15.9 0.0 0.02 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|327310063|ref|YP_004336960.1| - 0.019 14.3 0.7 0.13 11.6 0.0 2.1 1 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|327310063|ref|YP_004336960.1| - 0.024 14.2 0.4 0.067 12.8 0.1 1.9 1 1 1 2 2 2 0 NACHT domain NB-ARC PF00931.17 gi|327310063|ref|YP_004336960.1| - 0.027 13.3 0.0 0.045 12.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_15 PF13175.1 gi|327310063|ref|YP_004336960.1| - 0.039 13.0 0.0 0.72 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|327310063|ref|YP_004336960.1| - 0.043 12.4 1.0 2.8 6.4 0.1 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|327310063|ref|YP_004336960.1| - 0.072 12.2 0.0 0.17 11.0 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|327310063|ref|YP_004336960.1| - 0.079 12.6 0.0 0.21 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|327310063|ref|YP_004336960.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|327310063|ref|YP_004336960.1| - 0.12 12.0 0.0 0.35 10.6 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|327310063|ref|YP_004336960.1| - 0.12 12.0 0.2 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 NTPase AAA_23 PF13476.1 gi|327310063|ref|YP_004336960.1| - 0.19 12.0 0.0 0.27 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|327310063|ref|YP_004336960.1| - 0.2 10.1 0.0 5.1 5.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Nop10p PF04135.7 gi|327310064|ref|YP_004336961.1| - 7.2e-24 83.2 1.1 8.5e-24 83.0 0.8 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Ribosomal_L32p PF01783.18 gi|327310064|ref|YP_004336961.1| - 0.0015 18.6 0.3 0.0024 18.0 0.2 1.3 1 0 0 1 1 1 1 Ribosomal L32p protein family DUF35_N PF12172.3 gi|327310064|ref|YP_004336961.1| - 0.0024 17.7 1.3 0.0043 16.9 0.9 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.6 gi|327310064|ref|YP_004336961.1| - 0.0049 16.3 3.2 0.69 9.4 0.2 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|327310064|ref|YP_004336961.1| - 0.0063 16.3 0.1 0.0073 16.0 0.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.6 gi|327310064|ref|YP_004336961.1| - 0.0092 15.8 1.9 0.012 15.4 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.1 gi|327310064|ref|YP_004336961.1| - 0.016 14.4 5.0 0.051 12.7 3.5 1.8 1 1 0 1 1 1 0 zinc-ribbon domain RecR PF02132.10 gi|327310064|ref|YP_004336961.1| - 0.016 14.6 0.1 0.022 14.2 0.1 1.2 1 0 0 1 1 1 0 RecR protein Ribosomal_L37e PF01907.14 gi|327310064|ref|YP_004336961.1| - 0.051 13.3 0.4 0.074 12.8 0.3 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Nudix_N_2 PF14803.1 gi|327310064|ref|YP_004336961.1| - 0.053 13.2 2.4 0.43 10.3 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zn_ribbon_recom PF13408.1 gi|327310064|ref|YP_004336961.1| - 0.1 12.8 2.4 5.3 7.3 1.7 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF1936 PF09151.5 gi|327310064|ref|YP_004336961.1| - 0.12 11.8 1.6 0.96 9.0 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) zf-IS66 PF13005.2 gi|327310064|ref|YP_004336961.1| - 0.32 10.9 5.5 0.49 10.4 0.5 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.1 gi|327310064|ref|YP_004336961.1| - 0.39 10.2 7.0 1.4 8.4 0.8 2.3 1 1 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|327310064|ref|YP_004336961.1| - 0.45 10.3 3.8 1.4 8.8 2.6 2.0 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.7 gi|327310064|ref|YP_004336961.1| - 0.53 10.0 5.1 0.53 10.0 0.5 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.5 gi|327310064|ref|YP_004336961.1| - 0.55 10.2 5.3 22 5.0 0.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.9 gi|327310064|ref|YP_004336961.1| - 0.59 9.8 5.3 28 4.4 3.7 2.5 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-ISL3 PF14690.1 gi|327310064|ref|YP_004336961.1| - 1.1 9.3 6.0 4.4 7.4 0.9 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-tcix PF14952.1 gi|327310064|ref|YP_004336961.1| - 1.2 8.5 10.0 0.41 10.0 0.6 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-TFIIB PF13453.1 gi|327310064|ref|YP_004336961.1| - 2 7.6 6.4 1.5 8.1 0.8 2.1 1 1 2 3 3 3 0 Transcription factor zinc-finger zf-C4_Topoisom PF01396.14 gi|327310064|ref|YP_004336961.1| - 2.3 7.7 6.4 0.98 8.9 0.9 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-CCHC PF00098.18 gi|327310064|ref|YP_004336961.1| - 2.7 8.0 5.0 9 6.4 0.2 2.2 2 0 0 2 2 2 0 Zinc knuckle Zn_Tnp_IS1595 PF12760.2 gi|327310064|ref|YP_004336961.1| - 7.6 6.4 6.9 5.3 6.9 0.6 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain EIF_2_alpha PF07541.7 gi|327310065|ref|YP_004336962.1| - 1.1e-25 89.5 0.0 3.6e-25 87.8 0.0 1.9 1 1 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|327310065|ref|YP_004336962.1| - 1.2e-05 25.3 0.4 1.2e-05 25.3 0.3 1.9 2 0 0 2 2 2 1 S1 RNA binding domain Lipase_GDSL_2 PF13472.1 gi|327310065|ref|YP_004336962.1| - 0.17 11.9 0.0 0.61 10.1 0.0 1.6 1 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family STT3 PF02516.9 gi|327310066|ref|YP_004336963.1| - 1.1e-27 97.2 57.3 2.1e-26 92.9 39.7 2.3 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit zf-ribbon_3 PF13248.1 gi|327310067|ref|YP_004336964.1| - 0.032 13.4 1.8 0.94 8.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain BaffR-Tall_bind PF09256.5 gi|327310067|ref|YP_004336964.1| - 0.045 13.3 0.2 0.097 12.2 0.1 1.6 1 0 0 1 1 1 0 BAFF-R, TALL-1 binding DUF2387 PF09526.5 gi|327310067|ref|YP_004336964.1| - 0.047 13.6 2.2 0.59 10.1 0.0 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-C3HC4_3 PF13920.1 gi|327310067|ref|YP_004336964.1| - 0.058 13.0 0.0 0.095 12.3 0.0 1.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-dskA_traR PF01258.12 gi|327310067|ref|YP_004336964.1| - 0.066 12.9 1.5 0.92 9.3 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DNA_ligase_ZBD PF03119.11 gi|327310067|ref|YP_004336964.1| - 0.066 12.9 1.3 0.31 10.7 0.1 2.2 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1272 PF06906.6 gi|327310067|ref|YP_004336964.1| - 0.11 12.3 0.5 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DUF2688 PF10892.3 gi|327310067|ref|YP_004336964.1| - 0.23 11.1 0.8 0.46 10.1 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) Zn-ribbon_8 PF09723.5 gi|327310067|ref|YP_004336964.1| - 1.5 8.8 3.9 54 3.8 2.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain DHHA1 PF02272.14 gi|327310069|ref|YP_004336966.1| - 0.00044 19.8 0.1 0.0012 18.5 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain DUF1626 PF07788.6 gi|327310070|ref|YP_004336967.1| - 1.2e-20 73.0 0.5 2.8e-20 71.8 0.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) Reo_sigmaC PF04582.7 gi|327310070|ref|YP_004336967.1| - 3.7e-08 32.9 2.4 6.7e-05 22.2 0.6 1.8 1 1 1 2 2 2 2 Reovirus sigma C capsid protein TMF_DNA_bd PF12329.3 gi|327310070|ref|YP_004336967.1| - 1.4e-06 27.9 0.8 0.0039 16.9 0.0 2.2 1 1 2 3 3 3 2 TATA element modulatory factor 1 DNA binding DUF3782 PF12644.2 gi|327310070|ref|YP_004336967.1| - 5.1e-05 22.9 1.0 0.00015 21.4 0.6 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) DASH_Spc19 PF08287.6 gi|327310070|ref|YP_004336967.1| - 0.00024 20.7 1.2 0.00058 19.5 0.5 1.8 1 1 0 1 1 1 1 Spc19 SlyX PF04102.7 gi|327310070|ref|YP_004336967.1| - 0.00044 20.5 0.0 0.11 12.8 0.0 2.4 2 0 0 2 2 2 1 SlyX AAA_27 PF13514.1 gi|327310070|ref|YP_004336967.1| - 0.00087 17.1 0.0 0.0011 16.7 0.0 1.0 1 0 0 1 1 1 1 AAA domain DUF1664 PF07889.7 gi|327310070|ref|YP_004336967.1| - 0.0044 16.8 0.3 0.065 13.0 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Myosin_tail_1 PF01576.14 gi|327310070|ref|YP_004336967.1| - 0.0047 14.7 0.1 0.0062 14.3 0.1 1.1 1 0 0 1 1 1 1 Myosin tail SYCE1 PF15233.1 gi|327310070|ref|YP_004336967.1| - 0.0077 16.1 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Synaptonemal complex central element protein 1 Atg14 PF10186.4 gi|327310070|ref|YP_004336967.1| - 0.0084 15.0 0.1 0.011 14.6 0.0 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DUF948 PF06103.6 gi|327310070|ref|YP_004336967.1| - 0.0093 15.8 0.3 0.067 13.0 0.1 2.2 1 1 0 2 2 2 1 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.5 gi|327310070|ref|YP_004336967.1| - 0.021 14.9 0.0 2.9 7.9 0.0 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF16 PF01519.11 gi|327310070|ref|YP_004336967.1| - 0.029 14.5 0.1 0.25 11.5 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 WEMBL PF05701.6 gi|327310070|ref|YP_004336967.1| - 0.04 12.3 0.8 0.049 12.0 0.5 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light MCPsignal PF00015.16 gi|327310070|ref|YP_004336967.1| - 0.041 13.4 0.2 0.066 12.7 0.1 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF812 PF05667.6 gi|327310070|ref|YP_004336967.1| - 0.048 12.1 0.1 0.063 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) ALIX_LYPXL_bnd PF13949.1 gi|327310070|ref|YP_004336967.1| - 0.053 12.4 0.1 0.084 11.8 0.1 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Hemerythrin PF01814.18 gi|327310070|ref|YP_004336967.1| - 0.068 13.3 0.7 1.7 8.7 0.5 2.6 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain bZIP_1 PF00170.16 gi|327310070|ref|YP_004336967.1| - 0.16 11.9 1.1 0.63 10.0 0.0 2.5 3 1 0 3 3 3 0 bZIP transcription factor FlaC_arch PF05377.6 gi|327310070|ref|YP_004336967.1| - 0.46 10.4 5.1 0.85 9.5 0.5 3.4 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) tRNA-synt_2c PF01411.14 gi|327310071|ref|YP_004336968.1| - 2.2e-116 389.3 0.0 2.9e-116 388.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|327310071|ref|YP_004336968.1| - 2.9e-13 49.4 0.2 6.5e-13 48.3 0.1 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain MutS_III PF05192.13 gi|327310071|ref|YP_004336968.1| - 0.32 10.7 0.8 14 5.3 0.1 2.3 2 0 0 2 2 2 0 MutS domain III UBA PF00627.26 gi|327310072|ref|YP_004336969.1| - 1.9e-08 33.8 0.4 4.1e-08 32.8 0.0 1.7 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|327310072|ref|YP_004336969.1| - 0.00067 19.1 0.0 0.001 18.5 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain SPT6_acidic PF14632.1 gi|327310072|ref|YP_004336969.1| - 0.015 15.4 0.1 0.023 14.8 0.1 1.2 1 0 0 1 1 1 0 Acidic N-terminal SPT6 B5 PF03484.10 gi|327310072|ref|YP_004336969.1| - 0.016 15.0 0.0 0.055 13.2 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetase B5 domain Peptidase_M76 PF09768.4 gi|327310072|ref|YP_004336969.1| - 0.15 11.5 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 Peptidase M76 family DMA PF03474.9 gi|327310072|ref|YP_004336969.1| - 0.18 11.6 0.6 0.48 10.3 0.0 2.0 2 0 0 2 2 2 0 DMRTA motif Ribosomal_L16 PF00252.13 gi|327310073|ref|YP_004336970.1| - 2.6e-34 117.8 0.0 3e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Hydrolase_2 PF07486.7 gi|327310073|ref|YP_004336970.1| - 0.054 14.0 0.0 0.082 13.4 0.0 1.2 1 0 0 1 1 1 0 Cell Wall Hydrolase DUF2271 PF10029.4 gi|327310073|ref|YP_004336970.1| - 0.089 12.2 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2271) DUF2192 PF09958.4 gi|327310074|ref|YP_004336971.1| - 2.9e-73 245.9 6.5 3.3e-73 245.7 4.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Abhydrolase_6 PF12697.2 gi|327310075|ref|YP_004336972.1| - 3.1e-18 66.4 1.1 1.6e-16 60.9 0.7 2.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|327310075|ref|YP_004336972.1| - 3.4e-16 59.2 0.1 2.3e-15 56.6 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|327310075|ref|YP_004336972.1| - 1.7e-09 37.5 0.0 2e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.16 gi|327310075|ref|YP_004336972.1| - 3.2e-08 33.0 0.0 5.2e-08 32.3 0.0 1.3 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|327310075|ref|YP_004336972.1| - 2.3e-06 27.3 0.2 0.00015 21.4 0.1 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|327310075|ref|YP_004336972.1| - 0.012 15.0 0.0 2 7.7 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase PGAP1 PF07819.8 gi|327310075|ref|YP_004336972.1| - 0.014 15.0 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein BAAT_C PF08840.6 gi|327310075|ref|YP_004336972.1| - 0.028 14.1 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Lipase_3 PF01764.20 gi|327310075|ref|YP_004336972.1| - 0.045 13.3 0.0 0.068 12.7 0.0 1.5 1 0 0 1 1 1 0 Lipase (class 3) DLH PF01738.13 gi|327310075|ref|YP_004336972.1| - 0.058 12.6 0.6 0.31 10.3 0.4 2.2 1 1 0 1 1 1 0 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|327310075|ref|YP_004336972.1| - 0.12 11.8 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) PAC2 PF09754.4 gi|327310076|ref|YP_004336973.1| - 1.9e-42 145.5 0.3 2.3e-42 145.3 0.2 1.1 1 0 0 1 1 1 1 PAC2 family Peripla_BP_6 PF13458.1 gi|327310077|ref|YP_004336974.1| - 4.7e-54 184.0 7.0 5.8e-54 183.7 4.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|327310077|ref|YP_004336974.1| - 7.9e-28 97.2 0.4 1e-27 96.8 0.3 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|327310077|ref|YP_004336974.1| - 1.7e-18 66.5 0.5 5.1e-12 45.2 0.2 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain Peripla_BP_4 PF13407.1 gi|327310077|ref|YP_004336974.1| - 0.029 13.7 1.8 0.31 10.3 0.0 2.6 3 0 0 3 3 3 0 Periplasmic binding protein domain BPD_transp_2 PF02653.11 gi|327310078|ref|YP_004336975.1| - 5.2e-35 120.7 46.2 5.9e-35 120.5 32.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|327310079|ref|YP_004336976.1| - 2.1e-32 112.1 39.1 2.5e-32 111.8 27.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|327310080|ref|YP_004336977.1| - 4.3e-27 95.0 0.0 5.9e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310080|ref|YP_004336977.1| - 7.7e-10 39.1 0.1 4.2e-06 26.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|327310080|ref|YP_004336977.1| - 3.2e-06 27.3 0.1 0.068 13.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|327310080|ref|YP_004336977.1| - 1.7e-05 24.3 0.5 3.4e-05 23.3 0.4 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|327310080|ref|YP_004336977.1| - 2e-05 25.0 0.2 3.3e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|327310080|ref|YP_004336977.1| - 2.4e-05 23.7 0.0 4.4e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|327310080|ref|YP_004336977.1| - 5e-05 22.6 0.3 0.0034 16.6 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|327310080|ref|YP_004336977.1| - 8.6e-05 21.3 1.6 0.11 11.0 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|327310080|ref|YP_004336977.1| - 8.8e-05 22.0 0.1 0.023 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|327310080|ref|YP_004336977.1| - 0.0004 20.0 0.0 0.0013 18.4 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|327310080|ref|YP_004336977.1| - 0.00058 19.4 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327310080|ref|YP_004336977.1| - 0.0028 17.6 0.1 0.0088 16.0 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|327310080|ref|YP_004336977.1| - 0.0043 16.4 0.1 0.044 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|327310080|ref|YP_004336977.1| - 0.0075 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|327310080|ref|YP_004336977.1| - 0.0083 15.5 0.0 0.019 14.4 0.0 1.6 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|327310080|ref|YP_004336977.1| - 0.0088 16.8 0.1 0.024 15.4 0.0 1.8 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|327310080|ref|YP_004336977.1| - 0.011 14.9 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|327310080|ref|YP_004336977.1| - 0.014 14.2 0.1 0.077 11.8 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain Arch_ATPase PF01637.13 gi|327310080|ref|YP_004336977.1| - 0.015 15.0 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase T2SE PF00437.15 gi|327310080|ref|YP_004336977.1| - 0.017 14.0 0.2 0.12 11.2 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.7 gi|327310080|ref|YP_004336977.1| - 0.018 14.6 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|327310080|ref|YP_004336977.1| - 0.019 14.9 0.0 0.17 11.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|327310080|ref|YP_004336977.1| - 0.019 14.8 0.0 0.21 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|327310080|ref|YP_004336977.1| - 0.031 11.6 0.1 0.042 11.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MMR_HSR1 PF01926.18 gi|327310080|ref|YP_004336977.1| - 0.034 14.0 0.1 0.055 13.4 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.14 gi|327310080|ref|YP_004336977.1| - 0.034 13.5 0.3 0.074 12.4 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RecA PF00154.16 gi|327310080|ref|YP_004336977.1| - 0.041 12.9 0.0 0.061 12.3 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_33 PF13671.1 gi|327310080|ref|YP_004336977.1| - 0.048 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|327310080|ref|YP_004336977.1| - 0.14 11.1 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|327310080|ref|YP_004336977.1| - 0.15 11.1 0.0 0.3 10.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.1 gi|327310080|ref|YP_004336977.1| - 0.18 10.1 0.0 0.25 9.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|327310081|ref|YP_004336978.1| - 9.6e-31 106.9 0.0 1.4e-30 106.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310081|ref|YP_004336978.1| - 3.4e-16 60.0 0.2 1.3e-09 38.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|327310081|ref|YP_004336978.1| - 5.4e-06 25.7 0.2 0.00031 20.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|327310081|ref|YP_004336978.1| - 5.7e-05 23.2 0.2 0.082 13.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|327310081|ref|YP_004336978.1| - 8.2e-05 23.0 0.3 0.00015 22.1 0.1 1.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|327310081|ref|YP_004336978.1| - 0.00014 21.3 0.1 0.00035 20.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|327310081|ref|YP_004336978.1| - 0.00044 19.4 0.0 0.068 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|327310081|ref|YP_004336978.1| - 0.0026 17.6 0.1 0.018 14.9 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_11 PF13086.1 gi|327310081|ref|YP_004336978.1| - 0.013 15.0 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|327310081|ref|YP_004336978.1| - 0.014 14.7 0.0 0.048 13.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|327310081|ref|YP_004336978.1| - 0.02 14.6 0.3 0.062 13.0 0.0 2.0 2 1 0 2 2 2 0 Part of AAA domain AAA_10 PF12846.2 gi|327310081|ref|YP_004336978.1| - 0.04 13.3 0.1 0.87 8.9 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|327310081|ref|YP_004336978.1| - 0.041 13.4 0.0 0.13 11.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|327310081|ref|YP_004336978.1| - 0.066 13.1 0.0 1.5 8.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|327310081|ref|YP_004336978.1| - 0.079 12.3 0.4 0.15 11.4 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|327310081|ref|YP_004336978.1| - 0.1 12.7 0.6 0.77 9.9 0.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF169 PF02596.10 gi|327310082|ref|YP_004336979.1| - 1.2e-27 96.7 0.0 1.4e-27 96.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 ATP-cone PF03477.11 gi|327310083|ref|YP_004336980.1| - 1.7e-07 31.5 0.2 5.2e-07 30.0 0.0 1.8 2 0 0 2 2 2 1 ATP cone domain Phe_tRNA-synt_N PF02912.13 gi|327310083|ref|YP_004336980.1| - 0.028 14.1 0.1 0.091 12.4 0.0 1.8 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain SRP54_N PF02881.14 gi|327310083|ref|YP_004336980.1| - 0.054 13.6 4.8 1.7 8.8 0.1 2.9 2 1 0 2 2 2 0 SRP54-type protein, helical bundle domain Ribosomal_L5_C PF00673.16 gi|327310084|ref|YP_004336981.1| - 2.9e-24 84.6 0.0 7.5e-24 83.3 0.0 1.7 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|327310084|ref|YP_004336981.1| - 2.5e-17 62.3 0.0 4.4e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 TPR_7 PF13176.1 gi|327310084|ref|YP_004336981.1| - 0.15 11.8 0.1 29 4.7 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|327310084|ref|YP_004336981.1| - 0.18 11.8 1.0 51 4.1 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat ATP_bind_4 PF01902.12 gi|327310085|ref|YP_004336982.1| - 5e-23 81.6 0.0 6.3e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 ATP-binding region Vps23_core PF09454.5 gi|327310085|ref|YP_004336982.1| - 0.038 13.5 0.1 0.15 11.6 0.0 1.9 2 1 1 3 3 3 0 Vps23 core domain Asn_synthase PF00733.16 gi|327310086|ref|YP_004336983.1| - 9.1e-33 113.8 0.0 4.2e-17 62.4 0.0 2.1 2 0 0 2 2 2 2 Asparagine synthase NOA36 PF06524.7 gi|327310086|ref|YP_004336983.1| - 0.046 12.9 0.1 0.067 12.4 0.0 1.2 1 0 0 1 1 1 0 NOA36 protein QueC PF06508.8 gi|327310086|ref|YP_004336983.1| - 0.071 12.3 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DZR PF12773.2 gi|327310086|ref|YP_004336983.1| - 0.085 12.6 0.8 0.16 11.7 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|327310086|ref|YP_004336983.1| - 0.18 11.0 4.8 0.52 9.5 3.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327310086|ref|YP_004336983.1| - 0.63 9.6 4.7 4.8 6.8 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain NAD_kinase PF01513.16 gi|327310087|ref|YP_004336984.1| - 7.4e-15 54.4 0.1 9.8e-15 54.0 0.1 1.3 1 1 0 1 1 1 1 ATP-NAD kinase HTH_24 PF13412.1 gi|327310087|ref|YP_004336984.1| - 7.4e-07 28.4 0.0 5.7e-06 25.6 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|327310087|ref|YP_004336984.1| - 5.2e-06 26.0 0.4 2.8e-05 23.6 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|327310087|ref|YP_004336984.1| - 8.7e-06 25.4 0.2 3e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|327310087|ref|YP_004336984.1| - 2.1e-05 24.0 0.0 5.6e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|327310087|ref|YP_004336984.1| - 5e-05 23.3 0.0 0.00011 22.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|327310087|ref|YP_004336984.1| - 6.2e-05 22.6 0.1 0.00012 21.7 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|327310087|ref|YP_004336984.1| - 0.0002 21.1 0.0 0.00034 20.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|327310087|ref|YP_004336984.1| - 0.00036 20.7 0.0 0.00088 19.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|327310087|ref|YP_004336984.1| - 0.00089 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|327310087|ref|YP_004336984.1| - 0.004 16.9 0.0 0.009 15.7 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RepL PF05732.6 gi|327310087|ref|YP_004336984.1| - 0.0045 16.2 0.0 0.0065 15.7 0.0 1.2 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_42 PF06224.7 gi|327310087|ref|YP_004336984.1| - 0.007 15.7 0.3 0.015 14.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|327310087|ref|YP_004336984.1| - 0.0074 15.8 0.5 0.016 14.7 0.1 1.9 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|327310087|ref|YP_004336984.1| - 0.026 14.2 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|327310087|ref|YP_004336984.1| - 0.029 13.8 0.0 0.056 12.9 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_11 PF08279.7 gi|327310087|ref|YP_004336984.1| - 0.05 13.2 0.0 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 HTH domain GntR PF00392.16 gi|327310087|ref|YP_004336984.1| - 0.066 12.6 0.2 0.13 11.7 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FaeA PF04703.7 gi|327310087|ref|YP_004336984.1| - 0.14 12.2 0.0 0.47 10.6 0.0 1.8 2 0 0 2 2 1 0 FaeA-like protein Phage_rep_org_N PF09681.5 gi|327310087|ref|YP_004336984.1| - 0.2 11.2 0.0 0.35 10.4 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Lyase_1 PF00206.15 gi|327310088|ref|YP_004336985.1| - 5.5e-31 107.9 0.0 7.7e-31 107.4 0.0 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|327310088|ref|YP_004336985.1| - 0.0051 16.8 0.1 0.016 15.1 0.1 1.9 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus DUF4061 PF13270.1 gi|327310089|ref|YP_004336986.1| - 0.034 14.2 0.7 0.046 13.8 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4061) PIN PF01850.16 gi|327310090|ref|YP_004336987.1| - 7.2e-10 39.2 4.5 9.1e-10 38.9 3.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|327310090|ref|YP_004336987.1| - 0.0012 18.8 0.5 0.0015 18.6 0.4 1.1 1 0 0 1 1 1 1 PIN domain Adenylsucc_synt PF00709.16 gi|327310091|ref|YP_004336988.1| - 6.3e-69 232.6 0.0 3e-36 124.9 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase DAO PF01266.19 gi|327310092|ref|YP_004336989.1| - 9.7e-15 54.3 5.6 3e-07 29.6 0.5 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|327310092|ref|YP_004336989.1| - 8.3e-11 40.9 0.8 7.1e-06 24.7 0.3 2.6 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.17 gi|327310092|ref|YP_004336989.1| - 3e-09 36.2 0.9 0.0014 17.6 0.4 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|327310092|ref|YP_004336989.1| - 5.8e-09 36.1 0.1 2.2e-05 24.4 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|327310092|ref|YP_004336989.1| - 6e-07 28.8 0.1 1.1e-06 27.8 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|327310092|ref|YP_004336989.1| - 2.5e-06 27.6 0.3 0.0098 15.9 0.3 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|327310092|ref|YP_004336989.1| - 2.6e-06 26.5 1.5 2.6e-06 26.5 1.0 2.9 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|327310092|ref|YP_004336989.1| - 9.9e-06 25.5 0.1 3.3e-05 23.8 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|327310092|ref|YP_004336989.1| - 0.00016 20.8 0.4 0.00023 20.3 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|327310092|ref|YP_004336989.1| - 0.00035 19.5 0.6 0.00051 19.0 0.4 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|327310092|ref|YP_004336989.1| - 0.0005 20.4 1.2 0.22 11.9 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|327310092|ref|YP_004336989.1| - 0.003 16.6 1.5 0.0066 15.5 0.5 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|327310092|ref|YP_004336989.1| - 0.017 14.8 0.4 0.84 9.4 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding ThiF PF00899.16 gi|327310092|ref|YP_004336989.1| - 0.15 11.8 1.2 0.33 10.7 0.8 1.5 1 0 0 1 1 1 0 ThiF family Trp_halogenase PF04820.9 gi|327310092|ref|YP_004336989.1| - 0.22 10.0 0.7 0.32 9.5 0.5 1.2 1 0 0 1 1 1 0 Tryptophan halogenase His_Phos_1 PF00300.17 gi|327310093|ref|YP_004336990.1| - 6.3e-10 39.3 0.2 1.4e-09 38.2 0.0 1.6 1 1 1 2 2 2 1 Histidine phosphatase superfamily (branch 1) eRF1_1 PF03463.10 gi|327310094|ref|YP_004336991.1| - 6.1e-21 74.3 0.0 1.1e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|327310094|ref|YP_004336991.1| - 2.4e-09 37.4 0.0 1e-08 35.4 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|327310094|ref|YP_004336991.1| - 4.4e-06 27.0 0.0 8e-06 26.2 0.0 1.6 1 1 0 1 1 1 1 eRF1 domain 2 DoxX_3 PF13781.1 gi|327310095|ref|YP_004336992.1| - 0.026 14.8 2.1 0.03 14.6 1.4 1.1 1 0 0 1 1 1 0 DoxX-like family DUF3955 PF13127.1 gi|327310095|ref|YP_004336992.1| - 0.73 9.4 3.6 12 5.5 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) DHDPS PF00701.17 gi|327310096|ref|YP_004336993.1| - 3.3e-58 196.5 0.0 3.9e-58 196.3 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ACT_6 PF13740.1 gi|327310097|ref|YP_004336994.1| - 2.2e-18 65.7 1.6 2.5e-18 65.5 1.1 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|327310097|ref|YP_004336994.1| - 9.5e-12 44.1 3.1 1.3e-11 43.7 2.2 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|327310097|ref|YP_004336994.1| - 5.3e-05 23.4 2.5 8e-05 22.9 1.6 1.5 1 1 1 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|327310097|ref|YP_004336994.1| - 0.00042 19.7 0.8 0.00072 19.0 0.5 1.4 1 1 0 1 1 1 1 ACT domain DUF711 PF05167.7 gi|327310098|ref|YP_004336995.1| - 6.3e-139 463.1 0.5 8.2e-139 462.7 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) DUF1297 PF06973.7 gi|327310099|ref|YP_004336996.1| - 3.5e-76 254.7 0.0 4.3e-76 254.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|327310099|ref|YP_004336996.1| - 9.6e-44 148.1 0.0 1.4e-43 147.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|327310099|ref|YP_004336996.1| - 6.1e-06 26.1 0.0 9.2e-05 22.2 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain Hpt PF01627.18 gi|327310099|ref|YP_004336996.1| - 0.053 13.5 0.0 0.21 11.5 0.0 2.0 2 0 0 2 2 2 0 Hpt domain DUF1297 PF06973.7 gi|327310100|ref|YP_004336997.1| - 1.4e-56 190.7 0.3 2.2e-56 190.1 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|327310100|ref|YP_004336997.1| - 2.2e-38 130.7 0.0 3.6e-38 130.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.9 gi|327310100|ref|YP_004336997.1| - 6.9e-06 26.0 0.0 1.2e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|327310100|ref|YP_004336997.1| - 8.6e-06 25.6 0.3 2.7e-05 23.9 0.1 2.0 2 1 0 2 2 2 1 ATP-grasp domain RimK PF08443.6 gi|327310100|ref|YP_004336997.1| - 0.00075 19.0 0.0 0.0016 17.9 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.12 gi|327310100|ref|YP_004336997.1| - 0.019 14.2 0.0 0.033 13.4 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PIN PF01850.16 gi|327310101|ref|YP_004336998.1| - 8e-09 35.8 0.3 9.7e-09 35.6 0.2 1.1 1 0 0 1 1 1 1 PIN domain CcdA PF07362.7 gi|327310102|ref|YP_004336999.1| - 2.4e-06 27.2 6.0 1.1e-05 25.1 4.2 1.8 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA KaiC PF06745.8 gi|327310102|ref|YP_004336999.1| - 0.003 16.7 0.7 0.0033 16.5 0.5 1.0 1 0 0 1 1 1 1 KaiC PRP1_N PF06424.7 gi|327310102|ref|YP_004336999.1| - 0.0051 17.1 0.8 0.0059 16.9 0.5 1.1 1 0 0 1 1 1 1 PRP1 splicing factor, N-terminal DUF3619 PF12279.3 gi|327310102|ref|YP_004336999.1| - 0.024 14.7 1.2 0.024 14.6 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3619) KorB PF08535.5 gi|327310102|ref|YP_004336999.1| - 0.038 14.1 1.2 0.046 13.8 0.8 1.2 1 0 0 1 1 1 0 KorB domain DUF677 PF05055.7 gi|327310102|ref|YP_004336999.1| - 0.06 12.0 2.6 0.062 11.9 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) RHH_1 PF01402.16 gi|327310102|ref|YP_004336999.1| - 0.13 12.2 10.8 0.25 11.3 2.2 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Mo25 PF08569.6 gi|327310102|ref|YP_004336999.1| - 0.14 11.1 0.3 0.15 11.0 0.2 1.0 1 0 0 1 1 1 0 Mo25-like DUF3323 PF11796.3 gi|327310102|ref|YP_004336999.1| - 0.14 11.4 4.0 0.17 11.1 2.8 1.2 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) PDDEXK_1 PF12705.2 gi|327310102|ref|YP_004336999.1| - 0.16 11.3 0.9 0.15 11.4 0.6 1.0 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily PSD5 PF07637.6 gi|327310102|ref|YP_004336999.1| - 0.17 11.9 1.4 0.25 11.4 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1595) PSK_trans_fac PF07704.6 gi|327310102|ref|YP_004336999.1| - 0.17 12.6 4.9 0.21 12.3 3.4 1.3 1 0 0 1 1 1 0 Rv0623-like transcription factor Ran-binding PF05508.6 gi|327310102|ref|YP_004336999.1| - 0.21 10.4 2.0 0.24 10.2 1.4 1.0 1 0 0 1 1 1 0 RanGTP-binding protein RsbRD_N PF14361.1 gi|327310102|ref|YP_004336999.1| - 0.23 11.9 3.1 0.43 11.0 2.1 1.5 1 1 0 1 1 1 0 RsbT co-antagonist protein rsbRD N-terminal domain YtxH PF12732.2 gi|327310102|ref|YP_004336999.1| - 0.24 11.7 2.2 0.4 11.0 1.5 1.4 1 1 0 1 1 1 0 YtxH-like protein GvpK PF05121.7 gi|327310102|ref|YP_004336999.1| - 0.26 11.1 3.9 0.33 10.7 2.7 1.3 1 0 0 1 1 1 0 Gas vesicle protein K DUF4140 PF13600.1 gi|327310102|ref|YP_004336999.1| - 0.31 11.5 3.9 0.37 11.2 2.7 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) GTPase_Cys_C PF12631.2 gi|327310102|ref|YP_004336999.1| - 0.33 11.3 2.3 0.66 10.4 1.6 1.7 1 1 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Histone_HNS PF00816.16 gi|327310102|ref|YP_004336999.1| - 0.62 10.6 6.9 4.3 7.9 3.3 2.0 1 1 1 2 2 2 0 H-NS histone family RHH_3 PF12651.2 gi|327310102|ref|YP_004336999.1| - 2 8.2 7.4 1.5 8.6 0.7 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix domain Lactamase_B_2 PF12706.2 gi|327310103|ref|YP_004337000.1| - 6.5e-29 100.8 0.0 7.7e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|327310103|ref|YP_004337000.1| - 2.7e-12 46.7 1.4 9.8e-12 44.9 0.9 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|327310103|ref|YP_004337000.1| - 6.1e-07 29.2 0.0 8.9e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF839 PF05787.8 gi|327310103|ref|YP_004337000.1| - 0.019 13.8 0.0 0.024 13.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF839) DUF359 PF04019.7 gi|327310104|ref|YP_004337001.1| - 1.3e-32 111.7 0.0 1.5e-32 111.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Lactamase_B PF00753.22 gi|327310106|ref|YP_004337003.1| - 6e-15 55.3 6.7 1.5e-14 54.0 4.6 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|327310106|ref|YP_004337003.1| - 0.00042 19.9 0.1 0.00081 18.9 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF1743 PF08489.6 gi|327310107|ref|YP_004337004.1| - 7.1e-28 96.7 0.0 2.9e-27 94.7 0.0 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF1743) zf-NADH-PPase PF09297.6 gi|327310107|ref|YP_004337004.1| - 0.091 12.2 4.4 0.17 11.4 3.1 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|327310107|ref|YP_004337004.1| - 0.59 9.9 4.7 8.5 6.2 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain BPD_transp_1 PF00528.17 gi|327310108|ref|YP_004337005.1| - 5.6e-17 61.8 46.3 1.2e-11 44.4 11.8 4.0 1 1 3 4 4 4 2 Binding-protein-dependent transport system inner membrane component Chitin_synth_2 PF03142.10 gi|327310108|ref|YP_004337005.1| - 0.13 10.6 3.3 0.22 9.8 2.3 1.3 1 0 0 1 1 1 0 Chitin synthase SBP_bac_1 PF01547.20 gi|327310109|ref|YP_004337006.1| - 5.2e-15 55.9 0.0 1.3e-14 54.6 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1510 PF07423.6 gi|327310109|ref|YP_004337006.1| - 0.097 12.0 0.1 0.15 11.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) SpoIIIAH PF12685.2 gi|327310109|ref|YP_004337006.1| - 0.12 11.9 0.4 0.16 11.4 0.3 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein SoxE PF06525.6 gi|327310109|ref|YP_004337006.1| - 3.2 6.9 10.3 3.5 6.8 5.9 1.8 1 1 0 1 1 1 0 Sulfocyanin (SoxE) Hydrolase_3 PF08282.7 gi|327310110|ref|YP_004337007.1| - 1.3e-06 28.1 0.0 0.00022 20.9 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|327310110|ref|YP_004337007.1| - 5.3e-06 25.9 0.0 0.00028 20.2 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|327310110|ref|YP_004337007.1| - 9.5e-05 22.6 0.1 0.00087 19.5 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|327310110|ref|YP_004337007.1| - 0.008 16.6 0.1 0.1 12.9 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|327310110|ref|YP_004337007.1| - 0.1 11.5 0.0 0.18 10.7 0.0 1.4 1 0 0 1 1 1 0 Trehalose-phosphatase NTP_transf_2 PF01909.18 gi|327310111|ref|YP_004337008.1| - 3.3e-11 43.3 0.0 4.2e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|327310111|ref|YP_004337008.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|327310112|ref|YP_004337009.1| - 4.8e-29 100.6 0.1 5.5e-29 100.4 0.1 1.0 1 0 0 1 1 1 1 HEPN domain PPR_3 PF13812.1 gi|327310113|ref|YP_004337010.1| - 0.024 14.8 0.3 0.12 12.7 0.0 2.3 2 0 0 2 2 2 0 Pentatricopeptide repeat domain TPR_4 PF07721.9 gi|327310113|ref|YP_004337010.1| - 0.06 13.7 0.2 0.06 13.7 0.1 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|327310113|ref|YP_004337010.1| - 0.15 12.4 0.3 0.15 12.4 0.2 2.0 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|327310113|ref|YP_004337010.1| - 0.31 11.7 0.3 0.31 11.7 0.2 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat SSF PF00474.12 gi|327310114|ref|YP_004337011.1| - 6.9e-15 54.5 38.1 5.2e-14 51.6 26.4 2.1 1 1 0 1 1 1 1 Sodium:solute symporter family CcmD PF04995.9 gi|327310114|ref|YP_004337011.1| - 0.033 13.9 0.8 0.033 13.9 0.6 3.5 4 0 0 4 4 4 0 Heme exporter protein D (CcmD) FHIPEP PF00771.15 gi|327310114|ref|YP_004337011.1| - 0.12 10.7 3.9 0.2 9.9 2.7 1.3 1 0 0 1 1 1 0 FHIPEP family DUF3311 PF11755.3 gi|327310115|ref|YP_004337012.1| - 1.9e-18 65.7 9.8 2.1e-18 65.6 6.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) Peptidase_M20 PF01546.23 gi|327310116|ref|YP_004337013.1| - 1.9e-36 125.3 0.0 2.6e-36 124.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|327310116|ref|YP_004337013.1| - 4.8e-19 68.1 0.0 9.5e-19 67.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain AMP-binding PF00501.23 gi|327310118|ref|YP_004337015.1| - 2.1e-92 309.7 0.0 2.5e-92 309.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|327310118|ref|YP_004337015.1| - 2e-25 89.5 0.2 6.2e-25 87.9 0.2 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 4HBT PF03061.17 gi|327310119|ref|YP_004337016.1| - 1.9e-06 27.9 0.0 2.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|327310119|ref|YP_004337016.1| - 0.00013 22.4 0.0 0.00016 22.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily CobW_C PF07683.9 gi|327310119|ref|YP_004337016.1| - 0.02 14.5 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain PaREP1 PF05942.6 gi|327310120|ref|YP_004337017.1| - 3.2e-24 84.9 1.6 3.9e-24 84.7 1.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|327310120|ref|YP_004337017.1| - 0.00025 20.9 1.4 0.00049 19.9 1.0 1.5 1 1 0 1 1 1 1 HEPN domain CoA_transf_3 PF02515.12 gi|327310121|ref|YP_004337018.1| - 2.4e-33 114.9 0.2 3.5e-33 114.4 0.2 1.2 1 0 0 1 1 1 1 CoA-transferase family III AMP-binding PF00501.23 gi|327310122|ref|YP_004337019.1| - 8.9e-75 251.6 0.0 1.1e-74 251.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|327310122|ref|YP_004337019.1| - 1.6e-16 61.0 0.3 7.8e-16 58.7 0.3 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Thiolase_C PF02803.13 gi|327310124|ref|YP_004337021.1| - 9.2e-05 21.8 0.0 0.62 9.4 0.0 2.7 3 0 0 3 3 3 2 Thiolase, C-terminal domain Peptidase_M22 PF00814.20 gi|327310124|ref|YP_004337021.1| - 0.039 13.4 0.1 0.1 12.0 0.0 1.7 1 1 0 1 1 1 0 Glycoprotease family Thiolase_N PF00108.18 gi|327310124|ref|YP_004337021.1| - 0.066 12.1 0.0 2.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|327310124|ref|YP_004337021.1| - 0.073 12.7 0.0 13 5.5 0.0 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35_N PF12172.3 gi|327310125|ref|YP_004337022.1| - 6.8e-10 38.5 0.5 1.4e-09 37.5 0.4 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|327310125|ref|YP_004337022.1| - 5.7e-09 36.0 0.0 8.3e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|327310125|ref|YP_004337022.1| - 0.096 12.5 0.1 0.19 11.5 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon Ecl1 PF12855.2 gi|327310125|ref|YP_004337022.1| - 0.096 11.9 0.5 0.16 11.2 0.3 1.3 1 0 0 1 1 1 0 Life-span regulatory factor zf-ribbon_3 PF13248.1 gi|327310125|ref|YP_004337022.1| - 0.74 9.1 5.2 2 7.7 2.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|327310126|ref|YP_004337023.1| - 1.6e-06 27.8 0.1 2.7e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|327310126|ref|YP_004337023.1| - 3.7e-06 27.0 0.3 5.3e-06 26.5 0.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain zf-C2HC_2 PF13913.1 gi|327310126|ref|YP_004337023.1| - 0.11 12.1 0.7 0.2 11.3 0.5 1.3 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zf-ribbon_3 PF13248.1 gi|327310126|ref|YP_004337023.1| - 0.21 10.8 3.1 0.33 10.2 0.3 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327310126|ref|YP_004337023.1| - 1.2 8.7 4.0 0.87 9.1 0.6 1.6 1 1 1 2 2 2 0 zinc-ribbon domain Acyl-CoA_dh_1 PF00441.19 gi|327310127|ref|YP_004337024.1| - 1.8e-42 144.9 1.2 2.8e-42 144.3 0.8 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|327310127|ref|YP_004337024.1| - 3.7e-28 98.3 0.0 6.3e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|327310127|ref|YP_004337024.1| - 2.7e-21 74.8 0.1 5e-21 73.9 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|327310127|ref|YP_004337024.1| - 4.6e-17 62.5 0.4 1e-16 61.4 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HTH_28 PF13518.1 gi|327310128|ref|YP_004337025.1| - 0.059 13.3 0.0 0.078 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain SprT-like PF10263.4 gi|327310130|ref|YP_004337027.1| - 0.065 12.8 0.0 0.065 12.8 0.0 1.1 1 0 0 1 1 1 0 SprT-like family Molybdopterin PF00384.17 gi|327310131|ref|YP_004337028.1| - 1.4e-31 109.6 0.0 5.9e-18 64.8 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|327310131|ref|YP_004337028.1| - 6.4e-05 22.7 0.0 0.00027 20.7 0.0 2.1 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain SHOCT PF09851.4 gi|327310131|ref|YP_004337028.1| - 0.28 10.7 1.0 6.6 6.3 0.0 3.0 3 0 0 3 3 3 0 Short C-terminal domain Ribosomal_L44 PF00935.14 gi|327310132|ref|YP_004337029.1| - 8.7e-27 92.9 5.7 1e-26 92.7 4.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.1 gi|327310132|ref|YP_004337029.1| - 0.0053 15.9 1.5 1.2 8.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-Mss51 PF13824.1 gi|327310132|ref|YP_004337029.1| - 0.0065 16.2 0.3 1.5 8.7 0.0 2.1 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 zf-ISL3 PF14690.1 gi|327310132|ref|YP_004337029.1| - 0.024 14.6 1.5 1.9 8.5 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RecR PF02132.10 gi|327310132|ref|YP_004337029.1| - 0.027 13.8 1.2 0.33 10.4 0.1 2.2 2 0 0 2 2 2 0 RecR protein DUF2225 PF09986.4 gi|327310132|ref|YP_004337029.1| - 0.037 13.4 0.8 0.049 13.1 0.6 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-NADH-PPase PF09297.6 gi|327310132|ref|YP_004337029.1| - 0.047 13.1 1.2 2.3 7.8 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|327310132|ref|YP_004337029.1| - 0.052 13.0 3.4 0.56 9.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327310132|ref|YP_004337029.1| - 0.052 12.8 0.6 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.11 gi|327310132|ref|YP_004337029.1| - 0.067 12.8 0.4 3.1 7.5 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PHD_2 PF13831.1 gi|327310132|ref|YP_004337029.1| - 0.075 12.3 2.9 0.22 10.8 0.1 2.4 3 0 0 3 3 3 0 PHD-finger zinc_ribbon_4 PF13717.1 gi|327310132|ref|YP_004337029.1| - 0.14 11.8 2.3 4.1 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|327310132|ref|YP_004337029.1| - 0.18 11.4 2.2 4.8 6.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|327310132|ref|YP_004337029.1| - 0.18 11.6 2.6 0.32 10.8 1.8 1.5 1 1 0 1 1 1 0 IBR domain Mu-like_Com PF10122.4 gi|327310132|ref|YP_004337029.1| - 0.26 10.3 1.8 8 5.6 0.0 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-DNL PF05180.7 gi|327310132|ref|YP_004337029.1| - 0.32 10.7 1.6 7.8 6.3 0.0 2.2 2 0 0 2 2 2 0 DNL zinc finger zf-C4_Topoisom PF01396.14 gi|327310132|ref|YP_004337029.1| - 0.39 10.2 2.7 2.6 7.6 0.2 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger OrfB_Zn_ribbon PF07282.6 gi|327310132|ref|YP_004337029.1| - 0.46 10.1 2.3 1.2 8.7 0.0 2.2 2 1 0 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|327310132|ref|YP_004337029.1| - 0.52 10.1 3.4 4.2 7.2 2.4 2.1 1 1 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|327310132|ref|YP_004337029.1| - 0.59 9.8 4.5 7.1 6.4 1.0 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Ribosomal_S27e PF01667.12 gi|327310133|ref|YP_004337030.1| - 3.5e-25 87.3 0.4 3.9e-25 87.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|327310133|ref|YP_004337030.1| - 0.00055 19.1 0.7 0.00072 18.8 0.5 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|327310133|ref|YP_004337030.1| - 0.0023 17.0 0.6 0.47 9.7 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_6 PF14599.1 gi|327310133|ref|YP_004337030.1| - 0.0046 16.7 0.1 0.0059 16.3 0.1 1.2 1 0 0 1 1 1 1 Zinc-ribbon DUF3797 PF12677.2 gi|327310133|ref|YP_004337030.1| - 0.0088 15.6 1.1 0.026 14.1 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) DNA_ligase_ZBD PF03119.11 gi|327310133|ref|YP_004337030.1| - 0.017 14.7 1.9 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|327310133|ref|YP_004337030.1| - 0.02 14.8 0.3 0.033 14.1 0.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|327310133|ref|YP_004337030.1| - 0.026 14.2 0.1 0.031 13.9 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2 PF00096.21 gi|327310133|ref|YP_004337030.1| - 0.033 14.5 0.5 1 9.8 0.0 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type TFIIS_C PF01096.13 gi|327310133|ref|YP_004337030.1| - 0.037 13.6 1.7 0.57 9.8 1.2 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|327310133|ref|YP_004337030.1| - 0.05 13.1 1.2 0.36 10.3 0.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.3 gi|327310133|ref|YP_004337030.1| - 0.051 13.5 1.8 5 7.1 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin PF00301.15 gi|327310133|ref|YP_004337030.1| - 0.059 13.2 0.2 1.7 8.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin IBR PF01485.16 gi|327310133|ref|YP_004337030.1| - 0.069 13.0 0.1 0.08 12.8 0.0 1.1 1 0 0 1 1 1 0 IBR domain zf-ISL3 PF14690.1 gi|327310133|ref|YP_004337030.1| - 0.087 12.8 0.3 1.9 8.5 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|327310133|ref|YP_004337030.1| - 0.11 12.8 0.7 0.19 12.0 0.5 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|327310133|ref|YP_004337030.1| - 0.12 12.1 0.9 0.19 11.5 0.6 1.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Sgf11 PF08209.6 gi|327310133|ref|YP_004337030.1| - 0.15 11.3 1.8 2.2 7.6 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_5 PF13719.1 gi|327310133|ref|YP_004337030.1| - 0.23 11.0 4.3 1.2 8.8 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|327310133|ref|YP_004337030.1| - 0.26 10.8 1.2 1.1 8.7 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CcmH PF03918.9 gi|327310133|ref|YP_004337030.1| - 0.37 9.7 1.7 0.38 9.7 0.0 1.7 1 1 1 2 2 2 0 Cytochrome C biogenesis protein zinc_ribbon_4 PF13717.1 gi|327310133|ref|YP_004337030.1| - 0.58 9.8 4.6 2.4 7.9 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-trcl PF13451.1 gi|327310133|ref|YP_004337030.1| - 0.61 9.7 2.1 4.1 7.1 1.5 2.0 1 1 0 1 1 1 0 Probable zinc-binding domain Desulfoferrod_N PF06397.7 gi|327310133|ref|YP_004337030.1| - 0.63 9.4 6.2 2.4 7.6 0.5 2.5 1 1 2 3 3 3 0 Desulfoferrodoxin, N-terminal domain Mu-like_Com PF10122.4 gi|327310133|ref|YP_004337030.1| - 0.65 9.1 4.6 1.3 8.0 0.2 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com DNA_RNApol_7kD PF03604.8 gi|327310133|ref|YP_004337030.1| - 1.2 8.6 5.4 4.9 6.7 0.3 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit THDPS_M PF14789.1 gi|327310134|ref|YP_004337031.1| - 0.073 13.0 0.2 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase middle DNA_primase_S PF01896.14 gi|327310135|ref|YP_004337032.1| - 1e-18 67.5 0.0 1.6e-18 66.8 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Sugar_tr PF00083.19 gi|327310136|ref|YP_004337033.1| - 8.3e-32 110.3 38.1 1.7e-22 79.6 9.4 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|327310136|ref|YP_004337033.1| - 2.5e-26 92.2 71.5 3.2e-22 78.7 27.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|327310136|ref|YP_004337033.1| - 9.1e-10 37.4 33.3 5.6e-09 34.8 13.3 2.5 1 1 0 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|327310136|ref|YP_004337033.1| - 0.00049 19.8 8.5 0.027 14.2 0.0 2.9 2 0 0 2 2 2 2 MFS_1 like family Herpes_LAMP2 PF06126.6 gi|327310136|ref|YP_004337033.1| - 0.21 9.9 2.6 2.4 6.4 0.2 2.2 2 0 0 2 2 2 0 Herpesvirus Latent membrane protein 2 PCNA_N PF00705.13 gi|327310137|ref|YP_004337034.1| - 3.6e-13 49.1 0.0 3.4e-12 45.9 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|327310137|ref|YP_004337034.1| - 1.2e-12 47.8 0.2 2.7e-12 46.7 0.1 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|327310137|ref|YP_004337034.1| - 7.3e-07 28.5 0.0 8.6e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.11 gi|327310137|ref|YP_004337034.1| - 5.3e-06 25.4 0.0 0.0008 18.2 0.0 2.2 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 DNA_pol3_beta PF00712.14 gi|327310137|ref|YP_004337034.1| - 0.017 15.0 0.1 0.24 11.2 0.0 2.3 2 1 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain DUF4349 PF14257.1 gi|327310137|ref|YP_004337034.1| - 0.02 14.1 0.4 0.41 9.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) DUF3244 PF11589.3 gi|327310137|ref|YP_004337034.1| - 0.06 13.0 0.1 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3244) PepSY PF03413.14 gi|327310137|ref|YP_004337034.1| - 0.14 12.7 2.9 0.98 10.1 1.7 2.5 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain Antitoxin-MazE PF04014.13 gi|327310137|ref|YP_004337034.1| - 0.26 11.0 3.4 0.3 10.8 0.4 2.3 2 0 0 2 2 2 0 Antidote-toxin recognition MazE TFIIS_C PF01096.13 gi|327310138|ref|YP_004337035.1| - 1.2e-21 75.9 8.5 2e-20 72.1 3.1 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|327310138|ref|YP_004337035.1| - 7.3e-08 32.0 4.0 2.4e-05 24.0 0.8 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|327310138|ref|YP_004337035.1| - 5.2e-06 26.2 2.0 0.0054 16.6 0.5 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.7 gi|327310138|ref|YP_004337035.1| - 1.8e-05 23.9 3.6 0.0067 15.7 0.8 2.8 2 1 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.2 gi|327310138|ref|YP_004337035.1| - 2.7e-05 23.8 2.0 0.0069 16.1 0.3 2.2 2 0 0 2 2 2 1 Double zinc ribbon Lar_restr_allev PF14354.1 gi|327310138|ref|YP_004337035.1| - 7.6e-05 22.9 2.8 0.028 14.7 0.4 2.2 2 0 0 2 2 2 2 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|327310138|ref|YP_004337035.1| - 8.6e-05 22.0 5.4 0.52 9.9 0.1 3.2 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|327310138|ref|YP_004337035.1| - 0.00011 21.7 6.1 0.57 9.9 0.1 3.2 3 0 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327310138|ref|YP_004337035.1| - 0.00013 21.0 7.1 0.24 10.6 0.1 3.2 3 0 0 3 3 3 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|327310138|ref|YP_004337035.1| - 0.00016 21.6 2.9 0.73 9.9 0.0 3.1 3 0 0 3 3 3 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|327310138|ref|YP_004337035.1| - 0.00033 20.5 7.1 0.79 9.7 0.0 3.3 3 0 0 3 3 3 1 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|327310138|ref|YP_004337035.1| - 0.00045 19.9 2.7 0.27 11.0 0.4 2.7 2 1 0 2 2 2 2 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|327310138|ref|YP_004337035.1| - 0.0012 18.4 4.6 0.16 11.6 1.4 2.7 2 1 1 3 3 3 1 Putative transposase DNA-binding domain DUF2082 PF09855.4 gi|327310138|ref|YP_004337035.1| - 0.0016 18.2 5.7 1.8 8.5 0.0 3.1 3 0 0 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UPF0547 PF10571.4 gi|327310138|ref|YP_004337035.1| - 0.0017 18.0 8.9 0.56 9.9 0.1 3.2 2 1 1 3 3 3 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|327310138|ref|YP_004337035.1| - 0.0017 17.7 11.4 0.52 9.8 0.1 3.2 3 0 0 3 3 3 2 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|327310138|ref|YP_004337035.1| - 0.005 16.3 4.5 2.2 7.8 0.1 3.2 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain zf-DNA_Pol PF08996.5 gi|327310138|ref|YP_004337035.1| - 0.0058 16.0 0.6 0.67 9.2 0.1 2.0 1 1 1 2 2 2 1 DNA Polymerase alpha zinc finger RNA_POL_M_15KD PF02150.11 gi|327310138|ref|YP_004337035.1| - 0.012 15.2 8.4 0.17 11.5 0.0 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Terminase_GpA PF05876.7 gi|327310138|ref|YP_004337035.1| - 0.019 13.3 1.9 0.019 13.3 1.3 1.7 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) A2L_zn_ribbon PF08792.5 gi|327310138|ref|YP_004337035.1| - 0.019 14.3 6.2 1.9 8.0 0.1 3.1 3 0 0 3 3 3 0 A2L zinc ribbon domain DUF35_N PF12172.3 gi|327310138|ref|YP_004337035.1| - 0.033 14.1 6.6 3.4 7.7 0.0 3.2 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|327310138|ref|YP_004337035.1| - 0.043 13.4 5.5 0.049 13.3 0.9 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|327310138|ref|YP_004337035.1| - 0.044 13.6 7.7 7.7 6.4 0.7 3.3 3 0 0 3 3 3 0 Rubredoxin DUF1610 PF07754.6 gi|327310138|ref|YP_004337035.1| - 0.052 13.6 13.0 0.73 10.0 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Zn_ribbon_recom PF13408.1 gi|327310138|ref|YP_004337035.1| - 0.066 13.4 4.4 9 6.6 2.0 2.7 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Nudix_N_2 PF14803.1 gi|327310138|ref|YP_004337035.1| - 0.078 12.6 4.0 8.4 6.1 0.0 3.2 3 0 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.1 gi|327310138|ref|YP_004337035.1| - 0.081 12.4 5.7 0.36 10.3 0.6 2.8 1 1 2 3 3 3 0 Transposase zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|327310138|ref|YP_004337035.1| - 0.081 12.4 7.1 1.1 8.8 0.0 3.1 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit FYDLN_acid PF09538.5 gi|327310138|ref|YP_004337035.1| - 0.087 13.4 5.3 3.5 8.2 0.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-tcix PF14952.1 gi|327310138|ref|YP_004337035.1| - 0.096 12.0 6.3 3.1 7.2 0.1 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Ribosomal_L37e PF01907.14 gi|327310138|ref|YP_004337035.1| - 0.12 12.2 4.2 29 4.5 0.0 3.2 3 0 0 3 3 3 0 Ribosomal protein L37e DUF3797 PF12677.2 gi|327310138|ref|YP_004337035.1| - 0.14 11.7 7.0 0.79 9.3 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) zf-TFIIB PF13453.1 gi|327310138|ref|YP_004337035.1| - 0.18 11.0 7.5 9.3 5.5 0.0 2.7 2 1 0 2 2 2 0 Transcription factor zinc-finger FdhE PF04216.7 gi|327310138|ref|YP_004337035.1| - 0.19 11.4 5.1 0.024 14.3 0.8 1.5 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation ADK_lid PF05191.9 gi|327310138|ref|YP_004337035.1| - 0.2 11.3 4.4 1.1 8.9 0.1 2.9 3 0 0 3 3 3 0 Adenylate kinase, active site lid YhfH PF14149.1 gi|327310138|ref|YP_004337035.1| - 0.2 11.4 2.2 33 4.3 0.1 3.2 3 0 0 3 3 3 0 YhfH-like protein zf-H2C2_2 PF13465.1 gi|327310138|ref|YP_004337035.1| - 0.25 11.7 8.5 15 6.1 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger double domain DUF2296 PF10058.4 gi|327310138|ref|YP_004337035.1| - 0.26 11.0 5.9 8 6.2 1.8 3.0 2 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2_4 PF13894.1 gi|327310138|ref|YP_004337035.1| - 0.3 11.5 4.4 19 5.8 0.0 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger DUF1936 PF09151.5 gi|327310138|ref|YP_004337035.1| - 0.31 10.5 8.5 1.5 8.3 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) PolC_DP2 PF03833.8 gi|327310138|ref|YP_004337035.1| - 0.31 8.6 1.7 0.31 8.6 0.7 1.4 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Ribosomal_S27e PF01667.12 gi|327310138|ref|YP_004337035.1| - 0.34 10.4 2.7 16 5.1 0.0 2.9 2 1 0 2 2 2 0 Ribosomal protein S27 CpXC PF14353.1 gi|327310138|ref|YP_004337035.1| - 0.42 10.5 5.3 5.1 7.0 0.0 2.9 1 1 2 3 3 3 0 CpXC protein Opy2 PF09463.5 gi|327310138|ref|YP_004337035.1| - 0.57 10.3 4.6 4.4 7.4 0.0 2.8 3 0 0 3 3 3 0 Opy2 protein zf-MYND PF01753.13 gi|327310138|ref|YP_004337035.1| - 0.63 9.9 4.0 3.9 7.4 0.8 2.6 2 1 0 2 2 2 0 MYND finger IBR PF01485.16 gi|327310138|ref|YP_004337035.1| - 0.71 9.7 6.1 78 3.2 4.2 2.8 1 1 0 1 1 1 0 IBR domain zf-Mss51 PF13824.1 gi|327310138|ref|YP_004337035.1| - 0.77 9.6 4.5 32 4.4 1.9 2.8 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Baculo_LEF5_C PF11792.3 gi|327310138|ref|YP_004337035.1| - 1 8.8 5.2 0.44 9.9 0.7 2.4 2 1 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain DUF4379 PF14311.1 gi|327310138|ref|YP_004337035.1| - 1.2 9.0 5.8 26 4.7 0.8 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4379) TerY-C PF15616.1 gi|327310138|ref|YP_004337035.1| - 1.4 8.8 4.4 3.4 7.6 0.6 2.2 1 1 1 2 2 2 0 TerY-C metal binding domain Cys_rich_KTR PF14205.1 gi|327310138|ref|YP_004337035.1| - 2 7.9 4.2 17 4.9 0.0 2.7 3 0 0 3 3 3 0 Cysteine-rich KTR NOB1_Zn_bind PF08772.6 gi|327310138|ref|YP_004337035.1| - 2.1 8.2 6.9 1.6 8.6 0.2 2.9 2 1 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2 PF00096.21 gi|327310138|ref|YP_004337035.1| - 4 7.9 8.3 47 4.5 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type Desulfoferrod_N PF06397.7 gi|327310138|ref|YP_004337035.1| - 4.2 6.8 6.4 7.6 6.0 0.2 3.0 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-C4_Topoisom PF01396.14 gi|327310138|ref|YP_004337035.1| - 4.2 6.9 10.1 8.8 5.9 0.2 2.7 2 1 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-trcl PF13451.1 gi|327310138|ref|YP_004337035.1| - 4.3 7.0 7.6 36 4.0 3.0 2.8 2 1 0 2 2 2 0 Probable zinc-binding domain Tnp_zf-ribbon_2 PF13842.1 gi|327310138|ref|YP_004337035.1| - 4.4 7.8 9.6 1.3e+02 3.0 0.0 3.1 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-HIT PF04438.11 gi|327310138|ref|YP_004337035.1| - 7.4 6.3 11.9 21 4.8 0.8 3.2 3 0 0 3 3 3 0 HIT zinc finger Ribosomal_S19e PF01090.14 gi|327310139|ref|YP_004337036.1| - 1.6e-53 179.9 0.2 1.8e-53 179.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|327310139|ref|YP_004337036.1| - 0.0014 18.1 0.1 0.024 14.2 0.1 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB C-terminus HTH_45 PF14947.1 gi|327310139|ref|YP_004337036.1| - 0.047 13.5 0.0 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Tox-MPTase3 PF15639.1 gi|327310139|ref|YP_004337036.1| - 0.13 11.9 0.1 0.29 10.8 0.1 1.8 1 1 0 1 1 1 0 Metallopeptidase toxin 3 dsDNA_bind PF01984.15 gi|327310140|ref|YP_004337037.1| - 2.6e-24 85.2 8.7 3e-24 85.0 6.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SDA1 PF05285.7 gi|327310140|ref|YP_004337037.1| - 0.0004 19.7 1.5 0.00042 19.7 1.0 1.1 1 0 0 1 1 1 1 SDA1 SIMPL PF04402.9 gi|327310140|ref|YP_004337037.1| - 0.08 12.7 0.6 0.099 12.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) Herpes_UL25 PF01499.11 gi|327310140|ref|YP_004337037.1| - 0.64 8.2 4.9 0.69 8.1 3.4 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family DUF3665 PF12427.3 gi|327310140|ref|YP_004337037.1| - 1.6 8.1 3.4 0.96 8.8 0.2 2.2 2 1 0 2 2 2 0 Branched-chain amino acid aminotransferase EF-1_beta_acid PF10587.4 gi|327310140|ref|YP_004337037.1| - 3.2 7.9 9.7 0.29 11.3 1.9 2.7 1 1 1 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region Ribosomal_L39 PF00832.15 gi|327310141|ref|YP_004337038.1| - 2.7e-18 65.1 10.4 3.2e-18 64.8 7.2 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|327310142|ref|YP_004337039.1| - 9.2e-25 86.1 3.3 1.1e-24 85.8 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Phage_mat-A PF03863.8 gi|327310142|ref|YP_004337039.1| - 0.11 11.4 0.8 0.12 11.4 0.6 1.1 1 0 0 1 1 1 0 Phage maturation protein NusB PF01029.13 gi|327310143|ref|YP_004337040.1| - 0.0003 20.7 0.5 0.0018 18.2 0.1 1.8 1 1 1 2 2 2 1 NusB family DUF2397 PF09660.5 gi|327310143|ref|YP_004337040.1| - 0.064 11.8 0.1 0.068 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2397) HopW1-1 PF15457.1 gi|327310143|ref|YP_004337040.1| - 0.11 11.4 0.1 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA Helicase_C_2 PF13307.1 gi|327310144|ref|YP_004337041.1| - 1.2e-12 48.0 0.1 3.7e-12 46.5 0.0 1.9 3 0 0 3 3 3 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|327310144|ref|YP_004337041.1| - 2.1e-08 33.7 0.1 3.4e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|327310144|ref|YP_004337041.1| - 0.0048 16.7 0.2 0.57 9.9 0.0 2.7 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|327310144|ref|YP_004337041.1| - 0.036 14.2 0.2 0.82 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|327310145|ref|YP_004337042.1| - 4.4e-13 49.3 2.8 2.5e-06 27.1 0.4 2.1 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|327310145|ref|YP_004337042.1| - 7.8e-09 35.6 3.1 1.6e-08 34.6 2.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|327310145|ref|YP_004337042.1| - 3.4e-08 32.5 0.8 0.0008 18.1 0.1 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|327310145|ref|YP_004337042.1| - 4.1e-08 33.4 4.8 0.00011 22.2 3.3 2.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|327310145|ref|YP_004337042.1| - 1.5e-05 25.3 1.4 4.7e-05 23.6 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|327310145|ref|YP_004337042.1| - 1.7e-05 25.6 0.6 5e-05 24.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|327310145|ref|YP_004337042.1| - 1.8e-05 24.6 3.7 0.00095 19.0 0.1 2.5 2 1 0 2 2 2 1 AAA domain T4SS-DNA_transf PF02534.9 gi|327310145|ref|YP_004337042.1| - 2.2e-05 23.2 1.7 0.02 13.4 0.3 2.1 2 0 0 2 2 2 2 Type IV secretory system Conjugative DNA transfer TraG-D_C PF12696.2 gi|327310145|ref|YP_004337042.1| - 7.2e-05 22.6 0.3 0.00025 20.8 0.1 1.9 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG KaiC PF06745.8 gi|327310145|ref|YP_004337042.1| - 0.00035 19.7 0.9 0.00081 18.5 0.2 2.0 1 1 1 2 2 2 1 KaiC Arch_ATPase PF01637.13 gi|327310145|ref|YP_004337042.1| - 0.00055 19.6 8.0 0.047 13.3 5.6 2.2 1 1 0 1 1 1 1 Archaeal ATPase IPT PF01745.11 gi|327310145|ref|YP_004337042.1| - 0.0053 15.9 0.6 0.019 14.1 0.0 1.9 2 0 0 2 2 2 1 Isopentenyl transferase MobB PF03205.9 gi|327310145|ref|YP_004337042.1| - 0.008 15.8 2.3 0.009 15.7 0.2 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|327310145|ref|YP_004337042.1| - 0.013 15.4 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|327310145|ref|YP_004337042.1| - 0.019 14.9 0.4 0.034 14.1 0.3 1.4 1 1 0 1 1 1 0 AAA ATPase domain RecA PF00154.16 gi|327310145|ref|YP_004337042.1| - 0.023 13.7 0.6 0.044 12.8 0.0 1.7 2 0 0 2 2 2 0 recA bacterial DNA recombination protein CobU PF02283.11 gi|327310145|ref|YP_004337042.1| - 0.025 13.9 1.0 0.043 13.2 0.1 1.8 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase PduV-EutP PF10662.4 gi|327310145|ref|YP_004337042.1| - 0.034 13.6 0.5 0.076 12.5 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.24 gi|327310145|ref|YP_004337042.1| - 0.051 13.7 3.1 0.062 13.4 0.2 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|327310145|ref|YP_004337042.1| - 0.055 13.1 0.8 1.3 8.6 0.1 2.2 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|327310145|ref|YP_004337042.1| - 0.086 13.1 0.2 0.28 11.5 0.1 1.7 1 1 0 1 1 1 0 ABC transporter Miro PF08477.8 gi|327310145|ref|YP_004337042.1| - 0.11 12.9 0.5 0.3 11.6 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein GTP_EFTU PF00009.22 gi|327310145|ref|YP_004337042.1| - 0.35 10.2 1.8 0.5 9.7 0.1 2.0 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|327310145|ref|YP_004337042.1| - 3.8 7.5 6.2 14 5.6 4.3 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|327310145|ref|YP_004337042.1| - 9.1 6.5 9.1 3.8e+02 1.2 6.3 2.5 1 1 0 1 1 1 0 AAA domain UBN2 PF14223.1 gi|327310146|ref|YP_004337043.1| - 0.0015 18.3 1.1 0.0016 18.1 0.8 1.1 1 0 0 1 1 1 1 gag-polypeptide of LTR copia-type Vps35 PF03635.12 gi|327310146|ref|YP_004337043.1| - 0.032 12.3 0.8 0.034 12.2 0.6 1.0 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 Peptidase_M48 PF01435.13 gi|327310148|ref|YP_004337045.1| - 7.6e-13 48.5 0.1 1.3e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 T2SF PF00482.18 gi|327310149|ref|YP_004337046.1| - 0.049 13.5 0.3 0.32 10.8 0.1 1.9 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F PsbQ PF05757.6 gi|327310149|ref|YP_004337046.1| - 0.065 12.6 0.0 0.095 12.1 0.0 1.2 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) HK97-gp10_like PF04883.7 gi|327310149|ref|YP_004337046.1| - 0.12 13.3 0.3 0.23 12.4 0.2 1.7 1 1 0 1 1 1 0 Bacteriophage HK97-gp10, putative tail-component FYVE PF01363.16 gi|327310150|ref|YP_004337047.1| - 0.0002 21.1 1.9 0.00022 21.0 1.3 1.1 1 0 0 1 1 1 1 FYVE zinc finger DUF1272 PF06906.6 gi|327310150|ref|YP_004337047.1| - 0.00041 20.1 0.9 0.00051 19.8 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zf-RING_5 PF14634.1 gi|327310150|ref|YP_004337047.1| - 0.0024 17.5 5.2 0.0034 17.0 3.6 1.2 1 0 0 1 1 1 1 zinc-RING finger domain C1_1 PF00130.17 gi|327310150|ref|YP_004337047.1| - 0.0028 17.3 1.3 0.0037 16.9 0.9 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_3 PF13920.1 gi|327310150|ref|YP_004337047.1| - 0.0033 17.0 6.1 0.0065 16.1 4.2 1.5 1 1 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Nudix_N_2 PF14803.1 gi|327310150|ref|YP_004337047.1| - 0.0044 16.6 2.3 0.25 11.0 0.1 2.7 2 1 0 2 2 2 1 Nudix N-terminal zf-HIT PF04438.11 gi|327310150|ref|YP_004337047.1| - 0.0064 16.1 1.4 0.0064 16.1 1.0 2.9 1 1 0 2 2 2 1 HIT zinc finger zinc-ribbons_6 PF07191.7 gi|327310150|ref|YP_004337047.1| - 0.019 14.7 2.1 0.15 11.8 1.5 2.0 1 1 1 2 2 2 0 zinc-ribbons Elf1 PF05129.8 gi|327310150|ref|YP_004337047.1| - 0.026 14.1 0.4 0.035 13.7 0.3 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C3HC4_2 PF13923.1 gi|327310150|ref|YP_004337047.1| - 0.096 12.7 6.5 0.33 11.0 4.6 1.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_2 PF13639.1 gi|327310150|ref|YP_004337047.1| - 0.12 12.1 3.2 0.2 11.5 2.2 1.4 1 0 0 1 1 1 0 Ring finger domain DZR PF12773.2 gi|327310150|ref|YP_004337047.1| - 0.14 12.0 3.9 0.55 10.0 2.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|327310150|ref|YP_004337047.1| - 0.25 11.0 3.6 1.1 9.0 2.5 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|327310150|ref|YP_004337047.1| - 0.39 10.0 4.2 0.9 8.9 1.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Carb_bind PF10645.4 gi|327310150|ref|YP_004337047.1| - 0.39 10.5 2.5 2.2 8.1 1.7 2.0 1 1 0 1 1 1 0 Carbohydrate binding GFA PF04828.9 gi|327310150|ref|YP_004337047.1| - 0.41 10.6 3.7 3.8 7.5 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF35_N PF12172.3 gi|327310150|ref|YP_004337047.1| - 0.93 9.4 6.3 2.1 8.3 3.6 2.3 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CCHC PF00098.18 gi|327310150|ref|YP_004337047.1| - 1.2 9.1 0.1 1.2 9.1 0.1 2.9 3 0 0 3 3 3 0 Zinc knuckle zf-C3HC4 PF00097.20 gi|327310150|ref|YP_004337047.1| - 1.5 8.5 7.0 15 5.3 4.9 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_ribbon_recom PF13408.1 gi|327310150|ref|YP_004337047.1| - 1.6 9.0 12.0 62 3.9 8.3 2.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Prim_Zn_Ribbon PF08273.7 gi|327310150|ref|YP_004337047.1| - 2 8.5 7.5 7.3 6.7 5.2 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.1 gi|327310150|ref|YP_004337047.1| - 2.6 7.3 6.4 2.7 7.3 1.2 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-CCHC_5 PF14787.1 gi|327310150|ref|YP_004337047.1| - 2.9 7.4 6.2 0.52 9.8 1.3 1.9 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Ribosomal_L37e PF01907.14 gi|327310150|ref|YP_004337047.1| - 5.6 6.8 7.9 51 3.7 5.1 2.1 1 1 0 1 1 1 0 Ribosomal protein L37e C1_3 PF07649.7 gi|327310150|ref|YP_004337047.1| - 8.7 6.4 8.5 10 6.2 0.7 2.6 2 1 0 2 2 2 0 C1-like domain zf-B_box PF00643.19 gi|327310150|ref|YP_004337047.1| - 8.7 6.3 6.8 7.2 6.6 2.5 2.2 1 1 1 2 2 2 0 B-box zinc finger NTP_transferase PF00483.18 gi|327310152|ref|YP_004337049.1| - 4.3e-42 144.1 0.0 5.1e-42 143.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|327310152|ref|YP_004337049.1| - 1.1e-14 53.1 7.1 1.7e-06 27.2 0.1 4.3 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|327310152|ref|YP_004337049.1| - 3.2e-10 40.3 0.0 4.4e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|327310152|ref|YP_004337049.1| - 0.47 10.0 6.4 24 4.6 0.2 4.0 2 1 1 3 3 3 0 Hexapeptide repeat of succinyl-transferase DUF4310 PF14187.1 gi|327310153|ref|YP_004337050.1| - 0.012 15.1 0.5 1.1 8.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4310) HIT PF01230.18 gi|327310155|ref|YP_004337052.1| - 2.3e-12 47.2 0.0 3e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|327310155|ref|YP_004337052.1| - 7.5e-05 22.9 0.0 0.0001 22.4 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding LEM PF03020.10 gi|327310155|ref|YP_004337052.1| - 0.73 9.3 2.9 1 8.8 0.2 2.1 2 0 0 2 2 2 0 LEM domain ELK PF03789.8 gi|327310155|ref|YP_004337052.1| - 0.79 9.6 3.1 0.95 9.3 0.1 2.3 2 0 0 2 2 2 0 ELK domain AAA_21 PF13304.1 gi|327310156|ref|YP_004337053.1| - 1e-05 25.6 0.0 0.0016 18.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|327310156|ref|YP_004337053.1| - 0.0008 18.8 0.0 0.0025 17.3 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|327310156|ref|YP_004337053.1| - 0.0014 18.7 0.0 0.3 11.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|327310156|ref|YP_004337053.1| - 0.0027 16.9 0.0 0.97 8.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|327310156|ref|YP_004337053.1| - 0.015 15.2 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.24 gi|327310156|ref|YP_004337053.1| - 0.034 14.3 0.0 0.22 11.7 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|327310156|ref|YP_004337053.1| - 0.035 13.8 0.0 0.6 9.7 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase NACHT PF05729.7 gi|327310156|ref|YP_004337053.1| - 0.039 13.6 0.0 5.9 6.5 0.0 2.2 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.1 gi|327310156|ref|YP_004337053.1| - 0.046 14.0 0.0 0.06 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2813 PF11398.3 gi|327310156|ref|YP_004337053.1| - 0.053 12.5 0.0 0.09 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) Ovate PF04844.8 gi|327310156|ref|YP_004337053.1| - 0.082 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional repressor, ovate AAA_25 PF13481.1 gi|327310156|ref|YP_004337053.1| - 0.086 12.2 0.0 0.2 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|327310156|ref|YP_004337053.1| - 0.089 11.9 0.0 0.44 9.6 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|327310156|ref|YP_004337053.1| - 0.11 12.4 0.0 0.43 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|327310156|ref|YP_004337053.1| - 0.12 12.3 0.0 0.36 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|327310156|ref|YP_004337053.1| - 0.12 11.1 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_10 PF12846.2 gi|327310156|ref|YP_004337053.1| - 0.14 11.5 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_11 PF13086.1 gi|327310156|ref|YP_004337053.1| - 0.19 11.2 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain PIN PF01850.16 gi|327310157|ref|YP_004337054.1| - 8e-06 26.1 0.2 1.8e-05 25.0 0.1 1.6 1 1 0 1 1 1 1 PIN domain Fcf1 PF04900.7 gi|327310157|ref|YP_004337054.1| - 0.008 16.2 0.0 0.01 15.9 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|327310157|ref|YP_004337054.1| - 0.034 14.2 0.0 0.038 14.1 0.0 1.2 1 0 0 1 1 1 0 PIN domain XPG_I_2 PF12813.2 gi|327310157|ref|YP_004337054.1| - 0.042 13.3 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 XPG domain containing SHS2_Rpb7-N PF03876.12 gi|327310158|ref|YP_004337055.1| - 4.7e-16 58.6 0.0 7.7e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|327310158|ref|YP_004337055.1| - 6.2e-06 26.2 0.6 1e-05 25.5 0.4 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|327310158|ref|YP_004337055.1| - 0.00098 19.3 0.1 0.01 16.0 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 Spt4 PF06093.8 gi|327310159|ref|YP_004337056.1| - 2.4e-17 62.5 0.2 2.9e-17 62.3 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-ribbon_3 PF13248.1 gi|327310159|ref|YP_004337056.1| - 0.00023 20.2 3.3 0.00035 19.6 2.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|327310159|ref|YP_004337056.1| - 0.0004 20.0 3.0 0.00062 19.3 2.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|327310159|ref|YP_004337056.1| - 0.0004 20.1 1.0 0.00046 19.9 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|327310159|ref|YP_004337056.1| - 0.00043 19.5 0.6 0.0048 16.2 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|327310159|ref|YP_004337056.1| - 0.0012 18.2 3.1 0.0021 17.4 2.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RING_4 PF14570.1 gi|327310159|ref|YP_004337056.1| - 0.0076 15.8 1.0 0.012 15.2 0.7 1.2 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain Prok-RING_1 PF14446.1 gi|327310159|ref|YP_004337056.1| - 0.0082 15.8 1.3 0.013 15.1 0.9 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF35_N PF12172.3 gi|327310159|ref|YP_004337056.1| - 0.083 12.8 0.2 0.13 12.2 0.2 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF3797 PF12677.2 gi|327310159|ref|YP_004337056.1| - 0.087 12.4 5.1 0.33 10.5 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) HTH_22 PF13309.1 gi|327310159|ref|YP_004337056.1| - 0.09 12.5 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 HTH domain zf-tcix PF14952.1 gi|327310159|ref|YP_004337056.1| - 0.11 11.8 2.4 7 6.0 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding NRDD PF13597.1 gi|327310159|ref|YP_004337056.1| - 0.15 10.1 0.3 0.17 9.8 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase HIPIP PF01355.12 gi|327310159|ref|YP_004337056.1| - 0.15 12.2 0.8 0.21 11.7 0.6 1.3 1 0 0 1 1 1 0 High potential iron-sulfur protein zf-NADH-PPase PF09297.6 gi|327310159|ref|YP_004337056.1| - 0.17 11.4 0.7 0.8 9.2 0.1 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-RING_3 PF14369.1 gi|327310159|ref|YP_004337056.1| - 0.6 10.1 2.9 2.8 8.0 2.4 1.8 1 1 1 2 2 2 0 zinc-finger A2L_zn_ribbon PF08792.5 gi|327310159|ref|YP_004337056.1| - 1.1 8.7 5.5 12 5.4 3.8 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|327310159|ref|YP_004337056.1| - 1.4 8.9 5.4 7.6 6.5 3.7 2.1 1 1 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|327310159|ref|YP_004337056.1| - 1.5 8.5 4.7 0.88 9.2 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|327310159|ref|YP_004337056.1| - 2.5 7.9 4.7 2.5 7.9 1.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF4093 PF13331.1 gi|327310160|ref|YP_004337057.1| - 0.011 15.8 0.1 0.017 15.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4093) Cas_APE2256 PF09651.5 gi|327310160|ref|YP_004337057.1| - 0.026 14.2 0.1 0.054 13.1 0.0 1.5 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_APE2256) SIS PF01380.17 gi|327310161|ref|YP_004337058.1| - 1.1e-46 157.6 1.1 1.7e-27 95.5 0.7 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|327310161|ref|YP_004337058.1| - 4.3e-28 97.9 0.0 1e-27 96.7 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|327310161|ref|YP_004337058.1| - 5.2e-22 77.9 0.0 9.7e-22 77.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|327310161|ref|YP_004337058.1| - 6.2e-22 77.8 0.1 1.3e-16 60.2 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|327310161|ref|YP_004337058.1| - 9e-08 31.1 0.0 1.3e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|327310161|ref|YP_004337058.1| - 7.1e-07 29.0 0.8 4e-05 23.3 0.2 2.7 2 1 0 3 3 3 1 SIS domain bact-PGI_C PF10432.4 gi|327310161|ref|YP_004337058.1| - 0.0017 18.0 1.4 0.038 13.6 0.1 3.2 2 2 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal region Hexapep PF00132.19 gi|327310162|ref|YP_004337059.1| - 1.6e-12 46.3 11.9 6.5e-05 22.2 0.2 5.6 3 1 4 7 7 7 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|327310162|ref|YP_004337059.1| - 1.5e-05 24.4 3.6 0.54 9.8 0.0 4.6 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase PQQ_3 PF13570.1 gi|327310162|ref|YP_004337059.1| - 3.8 7.8 5.9 34 4.9 0.0 4.0 4 1 1 5 5 5 0 PQQ-like domain 4HBT PF03061.17 gi|327310163|ref|YP_004337060.1| - 7.3e-26 90.1 1.3 3.6e-12 46.2 0.1 2.4 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|327310163|ref|YP_004337060.1| - 0.00037 20.9 0.0 0.0052 17.2 0.0 2.0 1 1 0 2 2 2 1 Thioesterase-like superfamily MaoC_dehydratas PF01575.14 gi|327310163|ref|YP_004337060.1| - 0.0007 18.9 0.1 0.0072 15.7 0.0 2.2 2 0 0 2 2 2 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|327310163|ref|YP_004337060.1| - 0.056 13.2 0.0 12 5.7 0.0 2.3 2 0 0 2 2 2 0 N-terminal half of MaoC dehydratase DUF1667 PF07892.6 gi|327310163|ref|YP_004337060.1| - 0.074 12.7 0.1 8.5 6.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1667) DeoC PF01791.4 gi|327310164|ref|YP_004337061.1| - 3.8e-56 190.0 2.6 4.3e-56 189.8 1.8 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|327310164|ref|YP_004337061.1| - 0.038 12.9 0.6 0.068 12.1 0.4 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PHO4 PF01384.15 gi|327310165|ref|YP_004337062.1| - 0.48 9.0 15.9 1.7 7.2 5.4 3.1 1 1 2 3 3 3 0 Phosphate transporter family SRP54 PF00448.17 gi|327310166|ref|YP_004337063.1| - 4.7e-65 218.7 0.5 6.6e-65 218.2 0.3 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|327310166|ref|YP_004337063.1| - 2.6e-27 95.1 0.3 9.4e-27 93.3 0.1 2.1 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|327310166|ref|YP_004337063.1| - 1.5e-07 31.3 0.5 8.1e-07 29.0 0.0 2.5 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.1 gi|327310166|ref|YP_004337063.1| - 0.00013 22.1 0.0 0.0006 19.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|327310166|ref|YP_004337063.1| - 0.00038 19.9 0.5 0.0013 18.1 0.3 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.1 gi|327310166|ref|YP_004337063.1| - 0.00042 20.0 1.1 0.018 14.7 0.1 3.4 3 0 0 3 3 3 1 Part of AAA domain MobB PF03205.9 gi|327310166|ref|YP_004337063.1| - 0.00081 19.1 0.1 0.0022 17.6 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|327310166|ref|YP_004337063.1| - 0.0011 18.4 2.4 0.014 14.8 1.7 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|327310166|ref|YP_004337063.1| - 0.0015 17.3 0.7 0.0071 15.1 0.5 2.0 1 1 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|327310166|ref|YP_004337063.1| - 0.0019 17.6 0.1 0.0029 17.0 0.1 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|327310166|ref|YP_004337063.1| - 0.0026 17.2 2.3 0.0045 16.4 0.2 2.4 3 1 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|327310166|ref|YP_004337063.1| - 0.0033 18.2 0.0 0.01 16.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|327310166|ref|YP_004337063.1| - 0.004 16.8 0.0 0.0093 15.6 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase MipZ PF09140.6 gi|327310166|ref|YP_004337063.1| - 0.0047 16.0 0.2 0.18 10.8 0.1 2.4 1 1 0 1 1 1 1 ATPase MipZ AAA_33 PF13671.1 gi|327310166|ref|YP_004337063.1| - 0.0049 16.7 0.0 0.013 15.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_24 PF13479.1 gi|327310166|ref|YP_004337063.1| - 0.023 14.2 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|327310166|ref|YP_004337063.1| - 0.029 13.0 0.0 0.053 12.1 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit AAA_16 PF13191.1 gi|327310166|ref|YP_004337063.1| - 0.033 14.1 0.2 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Thymidylate_kin PF02223.12 gi|327310166|ref|YP_004337063.1| - 0.061 12.6 0.3 0.31 10.4 0.1 2.2 2 0 0 2 2 2 0 Thymidylate kinase Zeta_toxin PF06414.7 gi|327310166|ref|YP_004337063.1| - 0.061 12.4 0.0 0.12 11.4 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin LpxK PF02606.9 gi|327310166|ref|YP_004337063.1| - 0.088 11.7 1.4 1.2 8.0 0.2 2.1 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase ArsA_ATPase PF02374.10 gi|327310166|ref|YP_004337063.1| - 0.088 11.8 1.0 2.5 7.0 0.0 3.1 3 0 0 3 3 3 0 Anion-transporting ATPase ABC_tran PF00005.22 gi|327310166|ref|YP_004337063.1| - 0.12 12.6 0.1 0.96 9.7 0.0 2.4 2 1 0 2 2 2 0 ABC transporter PduV-EutP PF10662.4 gi|327310166|ref|YP_004337063.1| - 0.13 11.7 0.7 15 5.0 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Methyltrn_RNA_2 PF04013.7 gi|327310167|ref|YP_004337064.1| - 9.5e-06 25.2 0.0 1.4e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.12 gi|327310168|ref|YP_004337065.1| - 4.9e-10 39.4 0.1 9.8e-10 38.4 0.1 1.6 1 0 0 1 1 1 1 THUMP domain OCD_Mu_crystall PF02423.10 gi|327310169|ref|YP_004337066.1| - 9.9e-59 198.6 1.9 1.3e-58 198.2 1.3 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|327310169|ref|YP_004337066.1| - 3.2e-07 30.5 0.0 5.8e-07 29.6 0.0 1.4 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|327310169|ref|YP_004337066.1| - 0.035 14.6 0.0 0.081 13.4 0.0 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|327310169|ref|YP_004337066.1| - 0.07 13.5 0.3 0.21 12.0 0.0 2.0 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF981 PF06168.6 gi|327310170|ref|YP_004337067.1| - 2.7e-37 128.4 16.6 3.3e-37 128.1 11.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF981) SdpI PF13630.1 gi|327310170|ref|YP_004337067.1| - 0.11 12.2 15.1 0.56 9.9 3.2 3.2 1 1 1 2 2 2 0 SdpI/YhfL protein family DUF2306 PF10067.4 gi|327310170|ref|YP_004337067.1| - 4.4 7.4 10.7 1.1 9.3 0.5 2.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2306) ThiI PF02568.9 gi|327310171|ref|YP_004337068.1| - 3.4e-53 180.0 0.0 5.1e-53 179.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|327310171|ref|YP_004337068.1| - 1.7e-19 70.1 0.2 7.7e-19 67.9 0.0 2.2 2 1 1 3 3 3 1 THUMP domain Rhodanese PF00581.15 gi|327310171|ref|YP_004337068.1| - 7.6e-12 45.5 0.2 9.6e-11 42.0 0.0 2.4 2 0 0 2 2 2 1 Rhodanese-like domain QueC PF06508.8 gi|327310171|ref|YP_004337068.1| - 9.9e-05 21.7 0.0 0.26 10.5 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|327310171|ref|YP_004337068.1| - 0.075 11.5 0.1 0.14 10.6 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase ABC_membrane PF00664.18 gi|327310172|ref|YP_004337069.1| - 2.7e-42 145.1 1.5 3.4e-42 144.7 1.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|327310172|ref|YP_004337069.1| - 2.8e-34 118.3 0.0 4.7e-34 117.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter DUF1854 PF08909.6 gi|327310172|ref|YP_004337069.1| - 8.5e-24 83.6 0.0 3.2e-23 81.7 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1854) AAA_21 PF13304.1 gi|327310172|ref|YP_004337069.1| - 2.6e-08 34.1 0.0 4.2e-06 26.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain Gtr1_RagA PF04670.7 gi|327310172|ref|YP_004337069.1| - 0.00036 19.7 0.0 0.012 14.7 0.0 2.3 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region AAA_17 PF13207.1 gi|327310172|ref|YP_004337069.1| - 0.00041 21.1 0.0 0.0012 19.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|327310172|ref|YP_004337069.1| - 0.0022 17.0 0.0 0.0052 15.8 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin SMC_N PF02463.14 gi|327310172|ref|YP_004337069.1| - 0.006 15.8 0.0 0.53 9.4 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|327310172|ref|YP_004337069.1| - 0.0066 16.7 0.0 0.019 15.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|327310172|ref|YP_004337069.1| - 0.023 14.9 0.0 0.1 12.8 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|327310172|ref|YP_004337069.1| - 0.023 14.8 0.0 0.054 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.1 gi|327310172|ref|YP_004337069.1| - 0.041 14.0 0.0 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|327310172|ref|YP_004337069.1| - 0.043 13.7 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|327310172|ref|YP_004337069.1| - 0.054 13.9 0.0 1.2 9.5 0.0 2.6 3 0 0 3 3 2 0 Miro-like protein AAA_5 PF07728.9 gi|327310172|ref|YP_004337069.1| - 0.055 13.2 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|327310172|ref|YP_004337069.1| - 0.059 13.3 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|327310172|ref|YP_004337069.1| - 0.077 12.3 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|327310172|ref|YP_004337069.1| - 0.08 12.4 0.0 0.15 11.4 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|327310172|ref|YP_004337069.1| - 0.086 12.3 0.1 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF1021 PF06257.6 gi|327310172|ref|YP_004337069.1| - 0.091 12.4 0.4 0.37 10.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1021) DUF258 PF03193.11 gi|327310172|ref|YP_004337069.1| - 0.17 11.0 0.0 0.31 10.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 G-alpha PF00503.15 gi|327310172|ref|YP_004337069.1| - 0.39 9.3 0.0 0.62 8.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ABC_membrane_3 PF13748.1 gi|327310172|ref|YP_004337069.1| - 0.79 8.7 6.4 0.2 10.6 0.1 2.5 3 0 0 3 3 3 0 ABC transporter transmembrane region MFS_1 PF07690.11 gi|327310173|ref|YP_004337070.1| - 1.8e-30 105.8 73.1 1.8e-30 105.8 50.7 3.6 1 1 0 2 2 2 1 Major Facilitator Superfamily GFO_IDH_MocA PF01408.17 gi|327310175|ref|YP_004337072.1| - 4.8e-18 65.8 0.4 7.2e-18 65.2 0.3 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|327310175|ref|YP_004337072.1| - 3.1e-08 33.4 0.1 6.5e-08 32.3 0.0 1.5 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain IlvN PF07991.7 gi|327310175|ref|YP_004337072.1| - 0.0055 16.0 0.1 0.0079 15.5 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|327310175|ref|YP_004337072.1| - 0.036 14.4 0.0 0.071 13.5 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent MCR_beta_N PF02783.10 gi|327310175|ref|YP_004337072.1| - 0.078 12.4 0.1 0.15 11.4 0.1 1.5 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain Aminotran_3 PF00202.16 gi|327310176|ref|YP_004337073.1| - 6.9e-89 298.0 0.0 8.8e-89 297.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.14 gi|327310176|ref|YP_004337073.1| - 0.00028 19.7 0.0 0.00057 18.7 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V CN_hydrolase PF00795.17 gi|327310178|ref|YP_004337075.1| - 9.8e-15 54.3 0.0 1.3e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase NAD_synthase PF02540.12 gi|327310179|ref|YP_004337076.1| - 6.2e-76 254.4 0.0 7.1e-76 254.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase Sigma70_r4 PF04545.11 gi|327310179|ref|YP_004337076.1| - 3.3e-05 23.1 0.2 0.00029 20.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 tRNA_Me_trans PF03054.11 gi|327310179|ref|YP_004337076.1| - 0.00013 20.6 0.0 0.0059 15.2 0.0 2.4 3 0 0 3 3 3 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|327310179|ref|YP_004337076.1| - 0.00024 20.7 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|327310179|ref|YP_004337076.1| - 0.0037 16.7 0.0 0.006 16.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Sigma70_r4_2 PF08281.7 gi|327310179|ref|YP_004337076.1| - 0.018 14.5 0.6 0.076 12.4 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_17 PF12728.2 gi|327310179|ref|YP_004337076.1| - 0.046 13.9 0.4 0.15 12.3 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|327310179|ref|YP_004337076.1| - 0.1 12.2 2.0 0.69 9.6 0.0 3.4 4 1 0 4 4 4 0 Homeodomain-like domain SMC_hinge PF06470.8 gi|327310179|ref|YP_004337076.1| - 0.1 12.5 0.0 2.5 8.1 0.0 2.3 1 1 1 2 2 2 0 SMC proteins Flexible Hinge Domain QueC PF06508.8 gi|327310179|ref|YP_004337076.1| - 0.13 11.5 0.0 0.37 10.0 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC GATase_6 PF13522.1 gi|327310180|ref|YP_004337077.1| - 9.8e-15 54.6 0.0 1.4e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|327310180|ref|YP_004337077.1| - 1.7e-08 33.4 0.0 1.9e-07 30.0 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferases class-II GATase_2 PF00310.16 gi|327310180|ref|YP_004337077.1| - 0.00017 20.4 0.0 0.00024 19.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|327310180|ref|YP_004337077.1| - 0.0011 18.7 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain Gln-synt_C PF00120.19 gi|327310181|ref|YP_004337078.1| - 1e-77 260.8 0.0 1.3e-77 260.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|327310181|ref|YP_004337078.1| - 3.7e-12 45.6 0.0 6.2e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Glu_synthase PF01645.12 gi|327310182|ref|YP_004337079.1| - 4.7e-96 321.8 1.6 3.9e-90 302.4 0.1 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|327310182|ref|YP_004337079.1| - 9e-13 47.7 7.2 0.0031 16.4 0.1 3.6 3 0 0 3 3 3 3 FMN-dependent dehydrogenase Glu_syn_central PF04898.9 gi|327310182|ref|YP_004337079.1| - 0.0025 17.1 0.1 0.029 13.6 0.0 2.3 2 0 0 2 2 2 1 Glutamate synthase central domain NMO PF03060.10 gi|327310182|ref|YP_004337079.1| - 8.8 5.3 10.7 4.5 6.3 2.3 3.0 2 1 1 3 3 3 0 Nitronate monooxygenase Pyr_redox_dim PF02852.17 gi|327310183|ref|YP_004337080.1| - 3.4e-29 101.0 0.1 6.4e-29 100.2 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|327310183|ref|YP_004337080.1| - 1.3e-28 100.3 9.2 2.6e-14 53.5 0.0 4.0 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|327310183|ref|YP_004337080.1| - 1.1e-18 67.4 1.2 1.1e-18 67.4 0.8 2.9 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|327310183|ref|YP_004337080.1| - 8.5e-13 48.8 0.4 2.9e-08 34.0 0.1 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|327310183|ref|YP_004337080.1| - 1.5e-11 43.8 1.3 0.00012 21.0 0.0 3.3 3 0 0 3 3 3 3 Glucose inhibited division protein A DAO PF01266.19 gi|327310183|ref|YP_004337080.1| - 4.6e-10 38.9 12.8 0.0018 17.2 0.1 3.2 2 1 1 3 3 3 3 FAD dependent oxidoreductase Thi4 PF01946.12 gi|327310183|ref|YP_004337080.1| - 3.1e-07 29.7 3.3 0.00054 19.1 0.2 2.5 2 0 0 2 2 2 2 Thi4 family FAD_binding_2 PF00890.19 gi|327310183|ref|YP_004337080.1| - 1.7e-05 23.8 13.1 1.8e-05 23.8 0.7 3.9 3 1 1 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.1 gi|327310183|ref|YP_004337080.1| - 1.8e-05 24.6 5.4 0.014 15.4 0.8 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|327310183|ref|YP_004337080.1| - 4.7e-05 22.0 10.0 0.003 16.0 0.3 3.2 2 1 1 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.2 gi|327310183|ref|YP_004337080.1| - 6.7e-05 22.1 5.5 0.0037 16.4 0.0 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|327310183|ref|YP_004337080.1| - 9.9e-05 21.5 8.4 0.038 13.0 0.3 2.6 2 1 0 3 3 3 2 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|327310183|ref|YP_004337080.1| - 0.0015 17.9 0.4 0.0015 17.9 0.3 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|327310183|ref|YP_004337080.1| - 0.024 14.4 9.8 0.079 12.7 0.3 3.1 3 0 0 3 3 3 0 ThiF family Lycopene_cycl PF05834.7 gi|327310183|ref|YP_004337080.1| - 0.11 11.3 7.2 0.41 9.4 0.4 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|327310183|ref|YP_004337080.1| - 0.17 12.1 0.8 13 6.1 0.1 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|327310183|ref|YP_004337080.1| - 0.25 10.5 2.9 1.2 8.2 0.7 2.5 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|327310183|ref|YP_004337080.1| - 0.25 11.3 3.6 12 5.9 0.3 3.0 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.13 gi|327310183|ref|YP_004337080.1| - 0.26 10.9 6.1 0.18 11.4 0.3 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|327310183|ref|YP_004337080.1| - 1.3 7.5 4.0 2.2 6.7 0.5 2.1 2 0 0 2 2 2 0 Tryptophan halogenase GATase_6 PF13522.1 gi|327310184|ref|YP_004337081.1| - 4.2e-24 85.0 0.0 7.5e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GXGXG PF01493.14 gi|327310184|ref|YP_004337081.1| - 7.2e-23 80.6 27.2 7.3e-16 57.7 8.8 2.2 1 1 1 2 2 2 2 GXGXG motif GATase_7 PF13537.1 gi|327310184|ref|YP_004337081.1| - 3.2e-12 46.2 0.0 5.1e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|327310184|ref|YP_004337081.1| - 6.6e-11 41.5 0.0 3e-10 39.3 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferases class-II DUF2807 PF10988.3 gi|327310184|ref|YP_004337081.1| - 0.0064 16.0 0.2 0.01 15.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2807) PadR PF03551.9 gi|327310185|ref|YP_004337082.1| - 1.1e-21 76.3 0.4 2e-21 75.5 0.3 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|327310185|ref|YP_004337082.1| - 2.2e-10 40.4 0.1 9.7e-10 38.3 0.0 1.9 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|327310185|ref|YP_004337082.1| - 0.00052 19.7 0.4 0.0015 18.2 0.1 1.9 1 1 0 2 2 2 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|327310185|ref|YP_004337082.1| - 0.0017 17.9 0.0 12 5.5 0.0 3.4 3 1 1 4 4 4 0 Bacterial regulatory protein, arsR family SelB-wing_2 PF09106.6 gi|327310185|ref|YP_004337082.1| - 0.018 14.9 0.0 6.2 6.8 0.0 2.5 2 0 0 2 2 2 0 Elongation factor SelB, winged helix Replic_Relax PF13814.1 gi|327310185|ref|YP_004337082.1| - 0.022 14.5 0.1 0.043 13.6 0.0 1.4 1 1 0 1 1 1 0 Replication-relaxation TrmB PF01978.14 gi|327310185|ref|YP_004337082.1| - 0.024 14.3 0.8 0.24 11.1 0.5 2.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB OSCP PF00213.13 gi|327310185|ref|YP_004337082.1| - 0.029 14.2 0.2 0.038 13.8 0.1 1.2 1 0 0 1 1 1 0 ATP synthase delta (OSCP) subunit Mrr_N PF14338.1 gi|327310185|ref|YP_004337082.1| - 0.035 14.2 0.0 0.24 11.4 0.0 2.3 3 0 0 3 3 3 0 Mrr N-terminal domain AphA_like PF14557.1 gi|327310185|ref|YP_004337082.1| - 0.038 13.5 0.0 0.05 13.1 0.0 1.4 1 1 0 1 1 1 0 Putative AphA-like transcriptional regulator HxlR PF01638.12 gi|327310185|ref|YP_004337082.1| - 0.06 12.9 0.4 0.29 10.7 0.1 2.2 2 1 0 2 2 2 0 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|327310185|ref|YP_004337082.1| - 0.069 13.4 0.0 0.17 12.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF3116 PF11313.3 gi|327310185|ref|YP_004337082.1| - 0.15 11.6 0.6 0.3 10.7 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) NPCBM_assoc PF10633.4 gi|327310186|ref|YP_004337083.1| - 3.9e-15 55.6 27.1 0.00034 20.6 0.2 7.8 8 2 0 8 8 8 5 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.13 gi|327310186|ref|YP_004337083.1| - 8.8e-05 22.4 1.6 8.8e-05 22.4 1.1 6.7 6 0 0 6 6 6 2 Domain of unknown function DUF11 E1_DerP2_DerF2 PF02221.10 gi|327310186|ref|YP_004337083.1| - 0.0084 16.3 2.7 23 5.2 0.0 4.8 5 0 0 5 5 5 2 ML domain Alpha_adaptinC2 PF02883.15 gi|327310186|ref|YP_004337083.1| - 0.0099 16.1 3.2 0.48 10.7 0.1 3.1 3 0 0 3 3 3 1 Adaptin C-terminal domain DUF4131 PF13567.1 gi|327310186|ref|YP_004337083.1| - 0.053 12.9 1.9 0.5 9.7 0.1 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4131) TrmB PF01978.14 gi|327310188|ref|YP_004337085.1| - 0.0049 16.5 0.2 0.0093 15.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DsrC PF04358.8 gi|327310189|ref|YP_004337086.1| - 4e-31 107.4 0.0 4.5e-31 107.3 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein DUF1641 PF07849.6 gi|327310190|ref|YP_004337087.1| - 6.9e-16 57.5 0.1 6e-13 48.1 0.0 2.9 3 0 0 3 3 3 2 Protein of unknown function (DUF1641) eIF-1a PF01176.14 gi|327310191|ref|YP_004337088.1| - 6.4e-25 86.3 0.3 7.7e-25 86.1 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Nbl1_Borealin_N PF10444.4 gi|327310191|ref|YP_004337088.1| - 0.065 12.6 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal Peptidase_S24 PF00717.18 gi|327310191|ref|YP_004337088.1| - 0.12 12.0 0.5 8.1 6.1 0.1 2.3 1 1 0 2 2 2 0 Peptidase S24-like Glu_synthase PF01645.12 gi|327310192|ref|YP_004337089.1| - 2.7e-22 79.1 7.2 2.7e-21 75.9 3.6 3.0 1 1 1 2 2 2 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|327310192|ref|YP_004337089.1| - 1.7e-21 76.4 0.7 2.4e-15 56.2 0.2 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|327310192|ref|YP_004337089.1| - 1.2e-05 24.6 1.2 1.8e-05 24.0 0.9 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase bcl-2I13 PF12201.3 gi|327310193|ref|YP_004337090.1| - 0.1 12.0 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Bcl2-interacting killer, BH3-domain containing tRNA-synt_2 PF00152.15 gi|327310194|ref|YP_004337091.1| - 5.4e-59 199.6 0.1 8.4e-59 199.0 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) DrsE_2 PF13686.1 gi|327310195|ref|YP_004337092.1| - 2.7e-17 62.9 0.4 1.1e-16 61.0 0.3 1.7 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|327310195|ref|YP_004337092.1| - 9.9e-08 32.0 0.0 3.2e-07 30.4 0.0 1.7 1 1 0 1 1 1 1 DsrE/DsrF-like family Glyco_transf_4 PF13439.1 gi|327310195|ref|YP_004337092.1| - 0.14 11.8 0.1 0.41 10.3 0.0 1.6 1 1 1 2 2 2 0 Glycosyltransferase Family 4 TusA PF01206.12 gi|327310196|ref|YP_004337093.1| - 2.1e-20 72.1 0.0 2.3e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.9 gi|327310197|ref|YP_004337094.1| - 7.4e-15 55.3 0.0 1.5e-14 54.3 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|327310197|ref|YP_004337094.1| - 3.6e-06 27.2 0.0 0.045 14.1 0.0 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|327310197|ref|YP_004337094.1| - 8.4e-05 21.6 0.1 0.044 12.6 0.0 2.7 2 1 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|327310197|ref|YP_004337094.1| - 0.00031 20.8 0.0 6.8 6.6 0.0 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|327310197|ref|YP_004337094.1| - 0.00073 19.3 0.0 1 9.1 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|327310197|ref|YP_004337094.1| - 0.01 14.7 0.0 1.5 7.6 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein HI0933_like PF03486.9 gi|327310197|ref|YP_004337094.1| - 0.022 13.2 0.0 1.3 7.4 0.0 2.8 3 0 0 3 3 3 0 HI0933-like protein XdhC_C PF13478.1 gi|327310197|ref|YP_004337094.1| - 0.024 14.9 0.0 0.045 14.0 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_8 PF13450.1 gi|327310197|ref|YP_004337094.1| - 0.07 13.1 0.0 0.23 11.4 0.0 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|327310197|ref|YP_004337094.1| - 0.11 11.2 0.3 0.44 9.3 0.0 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|327310197|ref|YP_004337094.1| - 0.12 11.3 0.0 0.24 10.3 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_7 PF13241.1 gi|327310197|ref|YP_004337094.1| - 0.13 12.5 0.0 0.37 11.0 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|327310197|ref|YP_004337094.1| - 0.15 10.9 0.0 3 6.6 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DUF1641 PF07849.6 gi|327310198|ref|YP_004337095.1| - 0.001 18.6 1.0 0.0021 17.6 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) SecM PF06558.7 gi|327310198|ref|YP_004337095.1| - 0.044 13.4 0.5 1.4 8.5 0.0 2.5 2 1 0 2 2 2 0 Secretion monitor precursor protein (SecM) Rop PF01815.11 gi|327310198|ref|YP_004337095.1| - 0.27 10.7 5.0 6.1 6.3 0.0 3.3 3 1 0 3 3 3 0 Rop protein GyrI-like PF06445.10 gi|327310199|ref|YP_004337096.1| - 2.1e-07 31.1 0.0 2.6e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.1 gi|327310199|ref|YP_004337096.1| - 0.00012 22.1 0.0 0.00023 21.2 0.0 1.5 1 1 0 1 1 1 1 Integron-associated effector binding protein SfsA PF03749.8 gi|327310200|ref|YP_004337097.1| - 2.1e-50 171.1 0.0 3.4e-50 170.4 0.0 1.3 1 1 0 1 1 1 1 Sugar fermentation stimulation protein AAA_assoc_C PF09821.4 gi|327310202|ref|YP_004337099.1| - 2.2e-12 47.2 0.4 3.6e-12 46.5 0.3 1.5 1 1 0 1 1 1 1 C-terminal AAA-associated domain THUMP PF02926.12 gi|327310203|ref|YP_004337100.1| - 4.2e-14 52.6 0.2 8.8e-14 51.6 0.1 1.6 1 1 0 1 1 1 1 THUMP domain Abhydrolase_6 PF12697.2 gi|327310204|ref|YP_004337101.1| - 4.9e-22 78.9 0.3 4.2e-12 46.4 0.1 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|327310204|ref|YP_004337101.1| - 1.3e-16 60.6 0.0 1.5e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|327310204|ref|YP_004337101.1| - 3.4e-07 30.0 0.0 0.00061 19.4 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Methyltransf_11 PF08241.7 gi|327310205|ref|YP_004337102.1| - 2.7e-19 69.4 0.1 5.9e-19 68.3 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327310205|ref|YP_004337102.1| - 4.4e-16 58.8 0.0 6.3e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327310205|ref|YP_004337102.1| - 5.3e-14 52.4 0.1 8.2e-14 51.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|327310205|ref|YP_004337102.1| - 7.9e-12 45.1 0.0 1.6e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Nitro_FeMo-Co PF02579.12 gi|327310205|ref|YP_004337102.1| - 4.5e-11 42.6 0.3 4.5e-11 42.6 0.2 2.5 2 1 1 3 3 3 1 Dinitrogenase iron-molybdenum cofactor Methyltransf_25 PF13649.1 gi|327310205|ref|YP_004337102.1| - 5.6e-11 42.7 0.1 1.9e-10 40.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310205|ref|YP_004337102.1| - 8e-09 36.0 1.0 1.5e-08 35.1 0.3 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|327310205|ref|YP_004337102.1| - 1.3e-08 34.8 0.1 9.1e-08 32.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|327310205|ref|YP_004337102.1| - 2e-08 33.7 0.0 3.3e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|327310205|ref|YP_004337102.1| - 6.1e-06 25.5 0.1 1.5e-05 24.2 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|327310205|ref|YP_004337102.1| - 2.8e-05 23.6 0.0 4.3e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_8 PF05148.10 gi|327310205|ref|YP_004337102.1| - 0.00011 21.8 0.2 0.00028 20.6 0.1 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.7 gi|327310205|ref|YP_004337102.1| - 0.00017 21.0 0.1 0.00025 20.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|327310205|ref|YP_004337102.1| - 0.0025 16.8 0.0 0.004 16.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|327310205|ref|YP_004337102.1| - 0.0049 16.0 0.2 0.0072 15.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.9 gi|327310205|ref|YP_004337102.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_2 PF00891.13 gi|327310205|ref|YP_004337102.1| - 0.014 14.5 0.2 0.021 14.0 0.1 1.2 1 0 0 1 1 1 0 O-methyltransferase ADH_zinc_N PF00107.21 gi|327310205|ref|YP_004337102.1| - 0.022 14.3 1.5 0.079 12.5 0.1 2.3 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_32 PF13679.1 gi|327310205|ref|YP_004337102.1| - 0.063 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|327310205|ref|YP_004337102.1| - 0.086 12.8 0.2 1.8 8.5 0.1 2.4 1 1 1 2 2 2 0 TrkA-N domain Pterin_bind PF00809.17 gi|327310206|ref|YP_004337103.1| - 2.7e-46 157.5 0.0 5.9e-41 140.1 0.0 2.2 2 0 0 2 2 2 2 Pterin binding enzyme CdhD PF03599.11 gi|327310206|ref|YP_004337103.1| - 0.14 10.6 0.0 0.21 10.0 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit Radical_SAM PF04055.16 gi|327310209|ref|YP_004337106.1| - 1.1e-25 90.7 0.1 2.1e-25 89.7 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|327310209|ref|YP_004337106.1| - 1.2e-14 53.9 0.0 2.3e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|327310209|ref|YP_004337106.1| - 4.7e-05 23.0 0.4 9.4e-05 22.1 0.1 1.7 2 0 0 2 2 2 1 TRAM domain DUF2856 PF11043.3 gi|327310209|ref|YP_004337106.1| - 0.04 14.0 0.1 0.09 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2856) tRNA-synt_1g PF09334.6 gi|327310210|ref|YP_004337107.1| - 1.7e-144 481.3 0.0 2.1e-144 481.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|327310210|ref|YP_004337107.1| - 8.6e-13 47.1 0.4 2.7e-07 29.0 0.0 3.9 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|327310210|ref|YP_004337107.1| - 8.4e-08 32.1 0.1 1.7e-07 31.1 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|327310210|ref|YP_004337107.1| - 2.2e-05 23.7 0.0 0.0049 16.0 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain zf-ribbon_3 PF13248.1 gi|327310210|ref|YP_004337107.1| - 0.027 13.6 5.2 1.3 8.3 1.6 3.2 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|327310210|ref|YP_004337107.1| - 0.073 12.9 3.3 0.16 11.8 1.9 1.7 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|327310210|ref|YP_004337107.1| - 1.7 8.0 4.4 0.76 9.1 0.7 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|327310210|ref|YP_004337107.1| - 5.8 6.5 10.7 6 6.4 2.6 3.2 2 1 2 4 4 4 0 zinc-ribbon domain Prenyltransf PF01255.14 gi|327310211|ref|YP_004337108.1| - 8e-70 234.4 0.1 9e-70 234.2 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase tRNA_bind PF01588.15 gi|327310212|ref|YP_004337109.1| - 9.5e-27 92.6 0.0 1e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain BiPBP_C PF06832.7 gi|327310214|ref|YP_004337111.1| - 1.9e-05 24.5 0.0 0.1 12.5 0.0 4.7 4 1 1 5 5 5 1 Penicillin-Binding Protein C-terminus Family LEA_2 PF03168.8 gi|327310214|ref|YP_004337111.1| - 0.011 16.1 0.3 0.072 13.4 0.2 2.6 1 0 0 1 1 1 0 Late embryogenesis abundant protein Laminin_G_3 PF13385.1 gi|327310214|ref|YP_004337111.1| - 0.046 13.9 6.2 1.9 8.7 0.0 4.1 4 1 0 4 4 4 0 Concanavalin A-like lectin/glucanases superfamily SoxY PF13501.1 gi|327310214|ref|YP_004337111.1| - 0.055 13.5 0.1 0.2 11.6 0.1 2.0 1 0 0 1 1 1 0 Sulfur oxidation protein SoxY Big_3_4 PF13754.1 gi|327310214|ref|YP_004337111.1| - 0.47 10.8 8.5 53 4.2 0.1 5.0 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) HAD_2 PF13419.1 gi|327310215|ref|YP_004337112.1| - 3e-18 66.6 0.1 3.7e-18 66.3 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|327310215|ref|YP_004337112.1| - 8.2e-08 32.9 0.1 1.6e-07 31.9 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|327310215|ref|YP_004337112.1| - 5.1e-06 26.1 0.0 9.2e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|327310215|ref|YP_004337112.1| - 0.0017 18.1 0.0 0.12 12.3 0.0 2.4 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase CbiA PF01656.18 gi|327310216|ref|YP_004337113.1| - 1.3e-06 27.9 0.0 2.4e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|327310216|ref|YP_004337113.1| - 5.1e-05 23.2 0.1 0.00016 21.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|327310216|ref|YP_004337113.1| - 0.02 14.5 4.3 1.1 9.0 0.7 2.4 1 1 1 2 2 2 0 Part of AAA domain YhjQ PF06564.7 gi|327310216|ref|YP_004337113.1| - 0.024 14.0 0.2 0.057 12.7 0.0 1.6 1 1 1 2 2 2 0 YhjQ protein ArsA_ATPase PF02374.10 gi|327310216|ref|YP_004337113.1| - 0.041 12.9 0.5 0.1 11.6 0.2 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase MipZ PF09140.6 gi|327310216|ref|YP_004337113.1| - 0.089 11.8 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ Toxin_59 PF15537.1 gi|327310216|ref|YP_004337113.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative toxin 59 YtpI PF14007.1 gi|327310217|ref|YP_004337114.1| - 0.0092 15.8 0.6 0.011 15.6 0.4 1.1 1 0 0 1 1 1 1 YtpI-like protein Nuc_sug_transp PF04142.10 gi|327310217|ref|YP_004337114.1| - 0.016 14.3 0.2 0.017 14.2 0.1 1.0 1 0 0 1 1 1 0 Nucleotide-sugar transporter DUF2208 PF09973.4 gi|327310217|ref|YP_004337114.1| - 0.078 12.1 0.5 0.084 12.1 0.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) OAD_gamma PF04277.8 gi|327310217|ref|YP_004337114.1| - 0.15 12.4 0.7 0.27 11.6 0.5 1.5 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain DUF3784 PF12650.2 gi|327310217|ref|YP_004337114.1| - 0.18 11.7 2.6 0.22 11.4 1.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) IncA PF04156.9 gi|327310217|ref|YP_004337114.1| - 0.21 11.1 2.5 0.26 10.8 1.7 1.2 1 0 0 1 1 1 0 IncA protein DUF4418 PF14387.1 gi|327310217|ref|YP_004337114.1| - 0.24 11.1 6.2 0.36 10.5 4.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) Glycophorin_A PF01102.13 gi|327310217|ref|YP_004337114.1| - 0.33 10.7 3.1 0.42 10.3 2.0 1.4 1 1 0 1 1 1 0 Glycophorin A DUF2964 PF11177.3 gi|327310217|ref|YP_004337114.1| - 1.9 8.5 5.4 10 6.1 3.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2964) PhoU PF01895.14 gi|327310221|ref|YP_004337118.1| - 2.9e-12 46.8 5.1 2.1e-10 40.9 0.4 3.4 3 0 0 3 3 3 1 PhoU domain Antitoxin-MazE PF04014.13 gi|327310221|ref|YP_004337118.1| - 4.5e-07 29.4 0.1 1.1e-06 28.1 0.1 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE RNA_pol_L_2 PF13656.1 gi|327310221|ref|YP_004337118.1| - 0.023 14.1 0.1 0.77 9.2 0.0 2.7 2 0 0 2 2 2 0 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF1614 PF07758.6 gi|327310222|ref|YP_004337119.1| - 2.9e-44 150.9 14.7 2.9e-44 150.9 10.2 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DMRL_synthase PF00885.14 gi|327310223|ref|YP_004337120.1| - 1.2e-09 38.0 0.1 1.6e-09 37.5 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase RHH_1 PF01402.16 gi|327310224|ref|YP_004337121.1| - 3.8e-08 32.8 0.0 9.8e-08 31.5 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|327310224|ref|YP_004337121.1| - 4.9e-06 26.1 0.0 1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.6 gi|327310224|ref|YP_004337121.1| - 9.8e-05 22.1 0.3 0.00027 20.7 0.0 1.8 2 1 0 2 2 2 1 NikR C terminal nickel binding domain CCG PF02754.11 gi|327310225|ref|YP_004337122.1| - 9e-10 38.4 0.0 1.4e-06 28.2 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|327310226|ref|YP_004337123.1| - 4.5e-12 45.8 6.3 6.1e-12 45.3 4.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327310226|ref|YP_004337123.1| - 2e-10 40.2 18.6 1.4e-07 31.1 7.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327310226|ref|YP_004337123.1| - 6.7e-10 39.1 5.8 8.4e-10 38.8 4.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327310226|ref|YP_004337123.1| - 2e-09 37.6 7.0 3e-09 37.1 4.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|327310226|ref|YP_004337123.1| - 4.2e-08 32.8 10.6 0.001 19.2 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|327310226|ref|YP_004337123.1| - 4.8e-08 32.4 13.8 0.00038 20.2 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|327310226|ref|YP_004337123.1| - 1.4e-07 31.0 14.3 0.00032 20.4 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|327310226|ref|YP_004337123.1| - 5.3e-07 28.9 12.6 0.0012 18.3 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|327310226|ref|YP_004337123.1| - 7.3e-07 29.5 9.8 0.00026 21.3 0.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327310226|ref|YP_004337123.1| - 1.3e-06 28.1 6.7 0.0025 17.6 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|327310226|ref|YP_004337123.1| - 5.3e-06 26.6 20.1 0.00015 21.9 7.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327310226|ref|YP_004337123.1| - 0.00019 21.7 15.6 0.03 14.8 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|327310226|ref|YP_004337123.1| - 0.00025 20.6 4.4 0.02 14.5 0.1 2.0 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|327310226|ref|YP_004337123.1| - 0.0014 19.3 8.9 0.0098 16.6 6.5 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|327310226|ref|YP_004337123.1| - 0.0064 17.0 5.0 0.31 11.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|327310226|ref|YP_004337123.1| - 0.03 14.7 10.2 0.53 10.7 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-C2H2_4 PF13894.1 gi|327310226|ref|YP_004337123.1| - 0.33 11.3 0.3 0.33 11.3 0.2 2.3 2 1 0 2 2 2 0 C2H2-type zinc finger Prok-JAB PF14464.1 gi|327310227|ref|YP_004337124.1| - 2.1e-13 49.7 0.0 2.4e-13 49.5 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Peptidase_M24 PF00557.19 gi|327310228|ref|YP_004337125.1| - 3.7e-57 193.2 0.1 4.9e-57 192.8 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|327310228|ref|YP_004337125.1| - 8.3e-09 36.0 0.0 2.4e-08 34.5 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain dUTPase PF00692.14 gi|327310229|ref|YP_004337126.1| - 7.6e-17 60.9 0.0 2.6e-16 59.2 0.0 1.8 1 1 1 2 2 2 1 dUTPase ThiS PF02597.15 gi|327310231|ref|YP_004337128.1| - 3.8e-10 40.0 0.0 4.4e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|327310231|ref|YP_004337128.1| - 1.6e-07 31.3 0.0 1.7e-07 31.2 0.0 1.2 1 1 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TrkA_C PF02080.16 gi|327310231|ref|YP_004337128.1| - 0.053 13.1 0.1 0.11 12.0 0.1 1.6 1 0 0 1 1 1 0 TrkA-C domain TGS PF02824.16 gi|327310231|ref|YP_004337128.1| - 0.078 12.8 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 TGS domain DNA_binding_1 PF01035.15 gi|327310232|ref|YP_004337129.1| - 1.9e-19 69.2 0.0 3.2e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Fer4_15 PF13459.1 gi|327310233|ref|YP_004337130.1| - 1.7e-08 34.9 0.1 2.5e-08 34.3 0.0 1.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|327310233|ref|YP_004337130.1| - 3.1e-06 26.8 0.6 2.6e-05 23.9 0.4 2.0 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.1 gi|327310233|ref|YP_004337130.1| - 2.2e-05 24.7 0.0 4.1e-05 23.8 0.0 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Flexi_CP PF00286.15 gi|327310233|ref|YP_004337130.1| - 0.059 13.0 0.1 0.085 12.5 0.0 1.3 1 1 0 1 1 1 0 Viral coat protein Fer4_6 PF12837.2 gi|327310233|ref|YP_004337130.1| - 0.075 12.9 0.9 2.6 8.0 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Hydrolase_3 PF08282.7 gi|327310234|ref|YP_004337131.1| - 3.9e-11 43.0 0.0 6e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|327310234|ref|YP_004337131.1| - 8.9e-05 22.7 0.4 0.00019 21.6 0.3 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|327310234|ref|YP_004337131.1| - 0.00016 21.9 0.4 0.00041 20.6 0.2 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|327310234|ref|YP_004337131.1| - 0.00019 21.9 1.0 0.065 13.6 0.1 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|327310234|ref|YP_004337131.1| - 0.054 13.2 0.0 0.13 11.9 0.0 1.7 1 0 0 1 1 1 0 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|327310234|ref|YP_004337131.1| - 0.072 12.9 0.0 0.58 10.0 0.0 2.1 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PEP-utilizers_C PF02896.13 gi|327310235|ref|YP_004337132.1| - 1.5e-85 286.6 0.0 2.1e-85 286.1 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|327310235|ref|YP_004337132.1| - 4.3e-55 187.0 0.0 2.1e-54 184.7 0.0 2.1 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|327310235|ref|YP_004337132.1| - 1.1e-21 76.2 1.0 2.3e-21 75.1 0.7 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HEAT_EZ PF13513.1 gi|327310235|ref|YP_004337132.1| - 0.057 13.9 0.0 7.4 7.2 0.0 3.4 2 0 0 2 2 2 0 HEAT-like repeat Metallophos PF00149.23 gi|327310236|ref|YP_004337133.1| - 7.2e-21 74.5 0.0 1.2e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|327310236|ref|YP_004337133.1| - 0.00015 21.6 0.0 0.00037 20.3 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Radical_SAM PF04055.16 gi|327310238|ref|YP_004337135.1| - 1.2e-24 87.3 0.0 2e-23 83.3 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily zf-ribbon_3 PF13248.1 gi|327310238|ref|YP_004337135.1| - 7.6e-05 21.7 2.0 0.03 13.5 0.1 2.8 2 0 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|327310238|ref|YP_004337135.1| - 0.001 18.5 3.0 0.012 15.1 0.1 2.7 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|327310238|ref|YP_004337135.1| - 0.0015 17.9 5.9 0.45 10.0 0.6 2.8 2 0 0 2 2 2 2 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|327310238|ref|YP_004337135.1| - 0.0035 16.7 1.3 1.6 8.2 0.2 2.5 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger Fer4_14 PF13394.1 gi|327310238|ref|YP_004337135.1| - 0.0086 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.2 gi|327310238|ref|YP_004337135.1| - 0.013 15.3 0.9 0.013 15.3 0.6 2.6 2 1 0 2 2 2 0 Double zinc ribbon Fer4_12 PF13353.1 gi|327310238|ref|YP_004337135.1| - 0.018 15.1 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain GFA PF04828.9 gi|327310238|ref|YP_004337135.1| - 0.1 12.5 0.6 2.7 8.0 0.0 3.1 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme UPF0547 PF10571.4 gi|327310238|ref|YP_004337135.1| - 0.11 12.2 6.5 0.9 9.2 0.3 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.1 gi|327310238|ref|YP_004337135.1| - 0.12 12.3 3.7 2.5 8.2 0.1 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|327310238|ref|YP_004337135.1| - 0.73 9.5 0.1 0.73 9.5 0.0 3.0 3 0 0 3 3 3 0 Nudix N-terminal TatD_DNase PF01026.16 gi|327310239|ref|YP_004337136.1| - 6.7e-51 172.9 0.0 7.6e-51 172.7 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|327310239|ref|YP_004337136.1| - 9e-06 25.4 4.0 3.6e-05 23.4 2.8 2.2 1 1 0 1 1 1 1 Amidohydrolase AP_endonuc_2 PF01261.19 gi|327310239|ref|YP_004337136.1| - 0.0016 17.7 0.0 0.18 11.0 0.0 2.3 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Amidohydro_3 PF07969.6 gi|327310239|ref|YP_004337136.1| - 0.095 11.9 0.0 0.19 10.9 0.0 1.6 1 1 0 1 1 1 0 Amidohydrolase family BcrAD_BadFG PF01869.15 gi|327310240|ref|YP_004337137.1| - 3.7e-24 85.4 0.1 4.8e-24 85.0 0.1 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.15 gi|327310240|ref|YP_004337137.1| - 0.017 14.9 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 ROK family Hydant_A_N PF05378.8 gi|327310240|ref|YP_004337137.1| - 0.087 12.3 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region SIS PF01380.17 gi|327310241|ref|YP_004337138.1| - 4.5e-33 113.6 1.4 1.3e-21 76.5 0.3 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|327310241|ref|YP_004337138.1| - 5.2e-20 71.7 0.4 1.7e-19 70.0 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|327310241|ref|YP_004337138.1| - 1.3e-15 57.1 0.0 2.4e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|327310241|ref|YP_004337138.1| - 1.7e-07 31.0 3.5 0.0064 16.2 0.2 3.6 3 1 0 4 4 4 3 SIS domain GATase_2 PF00310.16 gi|327310241|ref|YP_004337138.1| - 3.8e-07 29.1 0.0 4.7e-06 25.5 0.0 2.1 1 1 1 2 2 2 1 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|327310241|ref|YP_004337138.1| - 0.004 15.8 0.0 0.0058 15.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II AP_endonuc_2 PF01261.19 gi|327310241|ref|YP_004337138.1| - 0.075 12.3 0.1 0.5 9.6 0.0 2.3 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel tRNA_edit PF04073.10 gi|327310242|ref|YP_004337139.1| - 7.6e-30 103.2 0.7 8.8e-30 103.0 0.5 1.0 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain MmoB_DmpM PF02406.12 gi|327310242|ref|YP_004337139.1| - 0.013 15.4 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 MmoB/DmpM family 2TM PF13239.1 gi|327310243|ref|YP_004337140.1| - 0.024 14.7 0.8 0.029 14.4 0.6 1.1 1 0 0 1 1 1 0 2TM domain FUSC PF04632.7 gi|327310243|ref|YP_004337140.1| - 0.051 12.0 1.3 0.059 11.7 0.9 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family TM140 PF14985.1 gi|327310243|ref|YP_004337140.1| - 0.084 12.5 1.5 0.092 12.4 1.0 1.0 1 0 0 1 1 1 0 TM140 protein family DUF4131 PF13567.1 gi|327310243|ref|YP_004337140.1| - 0.42 9.9 2.6 0.47 9.8 1.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) CBS PF00571.23 gi|327310244|ref|YP_004337141.1| - 3.1e-12 46.0 1.0 1e-05 25.1 0.0 2.4 2 1 0 2 2 2 2 CBS domain Sulf_transp PF04143.9 gi|327310245|ref|YP_004337142.1| - 3.5e-14 52.5 27.2 7.5e-10 38.6 6.0 4.4 5 0 0 5 5 5 2 Sulphur transport PALP PF00291.20 gi|327310246|ref|YP_004337143.1| - 0.0016 17.7 0.2 0.0019 17.4 0.2 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rhomboid PF01694.17 gi|327310248|ref|YP_004337145.1| - 0.081 12.9 4.0 0.12 12.3 2.8 1.3 1 1 0 1 1 1 0 Rhomboid family CcdA PF07362.7 gi|327310249|ref|YP_004337146.1| - 0.0091 15.8 1.2 0.04 13.7 0.9 1.9 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA DUF826 PF05696.6 gi|327310249|ref|YP_004337146.1| - 0.014 15.4 0.3 0.02 15.0 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF826) DUF2017 PF09438.5 gi|327310249|ref|YP_004337146.1| - 0.046 13.2 0.1 0.053 13.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2017) PIN PF01850.16 gi|327310250|ref|YP_004337147.1| - 8.3e-11 42.2 0.6 1e-10 41.9 0.4 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|327310250|ref|YP_004337147.1| - 0.025 15.2 0.3 0.031 14.9 0.2 1.3 1 1 0 1 1 1 0 PIN domain UbiD PF01977.11 gi|327310251|ref|YP_004337148.1| - 6.7e-135 449.6 0.0 8e-135 449.4 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiA PF01040.13 gi|327310252|ref|YP_004337149.1| - 2.5e-25 89.2 26.5 3.1e-25 88.8 18.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family ASCH PF04266.9 gi|327310253|ref|YP_004337150.1| - 1.2e-11 44.9 0.0 2.1e-11 44.1 0.0 1.4 2 0 0 2 2 2 1 ASCH domain Protoglobin PF11563.3 gi|327310253|ref|YP_004337150.1| - 0.012 15.2 0.1 0.33 10.6 0.0 2.1 2 0 0 2 2 2 0 Protoglobin DUF1192 PF06698.6 gi|327310253|ref|YP_004337150.1| - 0.015 15.0 0.4 0.05 13.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) DUF4192 PF13830.1 gi|327310253|ref|YP_004337150.1| - 0.028 14.0 5.0 0.034 13.7 3.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4192) GARS_C PF02843.11 gi|327310253|ref|YP_004337150.1| - 0.23 11.6 1.4 8.7 6.5 0.1 2.4 3 0 0 3 3 3 0 Phosphoribosylglycinamide synthetase, C domain CobD_Cbib PF03186.8 gi|327310254|ref|YP_004337151.1| - 7.5e-53 179.5 2.4 1e-52 179.0 1.6 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Radical_SAM PF04055.16 gi|327310255|ref|YP_004337152.1| - 1.9e-17 63.9 0.0 7.8e-17 61.9 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily PLDc_2 PF13091.1 gi|327310257|ref|YP_004337154.1| - 3.7e-24 84.8 0.0 1.3e-16 60.4 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|327310257|ref|YP_004337154.1| - 2.7e-05 23.8 5.2 0.018 14.8 0.4 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|327310257|ref|YP_004337154.1| - 0.0085 15.0 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB DUF202 PF02656.10 gi|327310257|ref|YP_004337154.1| - 0.042 14.0 1.0 0.16 12.2 0.7 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF336 PF03928.9 gi|327310257|ref|YP_004337154.1| - 0.05 13.3 0.1 0.15 11.8 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF336) SirB PF04247.7 gi|327310257|ref|YP_004337154.1| - 0.053 13.2 0.1 0.22 11.2 0.0 2.0 2 0 0 2 2 2 0 Invasion gene expression up-regulator, SirB Sulfatase PF00884.18 gi|327310257|ref|YP_004337154.1| - 0.093 11.8 0.1 1.1 8.3 0.0 2.2 2 0 0 2 2 2 0 Sulfatase Glyco_hydro_77 PF02446.12 gi|327310258|ref|YP_004337155.1| - 2.2e-141 471.8 0.0 2.5e-141 471.6 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase Inhibitor_Mig-6 PF11555.3 gi|327310258|ref|YP_004337155.1| - 0.0056 17.0 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 EGFR receptor inhibitor Mig-6 Phage_capsid PF05065.8 gi|327310258|ref|YP_004337155.1| - 0.03 13.5 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 Phage capsid family Adeno_E4_34 PF04528.8 gi|327310258|ref|YP_004337155.1| - 0.065 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Adenovirus early E4 34 kDa protein conserved region Glycos_transf_2 PF00535.21 gi|327310259|ref|YP_004337156.1| - 6.1e-34 117.1 0.0 8.7e-34 116.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|327310259|ref|YP_004337156.1| - 1.8e-22 79.4 6.4 3.2e-22 78.6 4.4 1.4 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|327310259|ref|YP_004337156.1| - 3.8e-17 62.8 0.3 7.9e-17 61.8 0.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|327310259|ref|YP_004337156.1| - 0.001 18.2 0.0 0.0014 17.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|327310259|ref|YP_004337156.1| - 0.0014 18.9 0.0 0.015 15.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Peripla_BP_6 PF13458.1 gi|327310259|ref|YP_004337156.1| - 0.0028 17.0 0.2 0.0028 17.0 0.1 1.6 2 0 0 2 2 2 1 Periplasmic binding protein KaiC PF06745.8 gi|327310260|ref|YP_004337157.1| - 9.8e-24 83.7 0.0 8.1e-13 48.0 0.0 3.5 3 1 0 3 3 3 2 KaiC IstB_IS21 PF01695.12 gi|327310260|ref|YP_004337157.1| - 1.2e-14 54.1 0.1 1.9e-06 27.4 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|327310260|ref|YP_004337157.1| - 2.4e-14 53.2 0.1 1.1e-08 34.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|327310260|ref|YP_004337157.1| - 6.6e-12 45.6 0.0 1.7e-06 28.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|327310260|ref|YP_004337157.1| - 4.2e-11 42.4 1.5 0.00023 20.8 0.1 2.5 2 0 0 2 2 2 2 Part of AAA domain AAA_16 PF13191.1 gi|327310260|ref|YP_004337157.1| - 2.9e-10 40.4 0.1 0.00094 19.2 0.0 3.0 4 0 0 4 4 2 2 AAA ATPase domain MobB PF03205.9 gi|327310260|ref|YP_004337157.1| - 2.6e-09 36.9 0.0 0.00019 21.1 0.0 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|327310260|ref|YP_004337157.1| - 1.9e-08 34.5 0.0 0.00055 20.1 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|327310260|ref|YP_004337157.1| - 1.1e-07 31.6 0.3 0.022 14.4 0.0 2.8 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|327310260|ref|YP_004337157.1| - 1.3e-07 31.3 0.2 0.017 14.5 0.0 2.8 3 0 0 3 3 2 2 AAA-like domain AAA_30 PF13604.1 gi|327310260|ref|YP_004337157.1| - 3.1e-07 30.1 0.1 0.022 14.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|327310260|ref|YP_004337157.1| - 1.2e-06 29.3 0.0 0.08 13.7 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|327310260|ref|YP_004337157.1| - 1.6e-06 28.4 0.0 0.056 13.7 0.0 3.0 2 1 1 3 3 3 2 AAA domain SRP54 PF00448.17 gi|327310260|ref|YP_004337157.1| - 2.2e-06 27.2 0.0 0.055 12.8 0.0 2.4 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|327310260|ref|YP_004337157.1| - 3.9e-06 26.6 0.3 0.085 12.5 0.0 2.7 2 2 0 2 2 2 2 NACHT domain PhoH PF02562.11 gi|327310260|ref|YP_004337157.1| - 1.1e-05 24.7 1.4 0.042 13.0 0.0 2.2 2 0 0 2 2 2 2 PhoH-like protein AAA_28 PF13521.1 gi|327310260|ref|YP_004337157.1| - 4.8e-05 23.3 0.0 0.27 11.1 0.0 2.5 2 1 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|327310260|ref|YP_004337157.1| - 6.4e-05 22.7 0.0 0.076 12.7 0.0 2.6 2 1 0 2 2 2 1 Archaeal ATPase AAA_33 PF13671.1 gi|327310260|ref|YP_004337157.1| - 0.00027 20.8 0.5 0.93 9.3 0.0 3.0 2 1 1 3 3 3 2 AAA domain cobW PF02492.14 gi|327310260|ref|YP_004337157.1| - 0.00028 20.3 0.1 0.6 9.5 0.0 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_31 PF13614.1 gi|327310260|ref|YP_004337157.1| - 0.0003 20.7 0.0 1.1 9.2 0.0 3.2 2 1 1 3 3 3 1 AAA domain ABC_tran PF00005.22 gi|327310260|ref|YP_004337157.1| - 0.00033 20.9 0.0 0.083 13.1 0.0 2.6 3 0 0 3 3 2 1 ABC transporter CbiA PF01656.18 gi|327310260|ref|YP_004337157.1| - 0.00048 19.5 1.8 0.36 10.1 0.3 2.6 2 1 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.1 gi|327310260|ref|YP_004337157.1| - 0.00061 19.2 1.1 1 8.9 0.0 3.1 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|327310260|ref|YP_004337157.1| - 0.00072 19.4 0.0 0.92 9.4 0.0 3.2 2 1 1 3 3 3 1 AAA domain Zot PF05707.7 gi|327310260|ref|YP_004337157.1| - 0.00075 19.0 0.1 0.89 8.9 0.0 2.3 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) RNA_helicase PF00910.17 gi|327310260|ref|YP_004337157.1| - 0.00097 19.2 0.0 0.38 10.9 0.0 2.4 2 0 0 2 2 2 1 RNA helicase GvpD PF07088.6 gi|327310260|ref|YP_004337157.1| - 0.00098 17.5 0.0 0.65 8.2 0.0 2.4 3 0 0 3 3 3 2 GvpD gas vesicle protein AAA_24 PF13479.1 gi|327310260|ref|YP_004337157.1| - 0.0013 18.3 0.5 0.089 12.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|327310260|ref|YP_004337157.1| - 0.0015 18.0 0.0 1.7 8.0 0.0 2.6 3 0 0 3 3 3 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_35 PF14516.1 gi|327310260|ref|YP_004337157.1| - 0.0016 17.1 0.0 0.67 8.5 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_11 PF13086.1 gi|327310260|ref|YP_004337157.1| - 0.0017 17.9 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|327310260|ref|YP_004337157.1| - 0.002 17.2 0.1 1.4 8.0 0.0 2.6 2 1 0 2 2 2 1 Zeta toxin NTPase_1 PF03266.10 gi|327310260|ref|YP_004337157.1| - 0.003 17.2 0.1 4 7.1 0.0 3.0 3 0 0 3 3 3 0 NTPase PduV-EutP PF10662.4 gi|327310260|ref|YP_004337157.1| - 0.0031 17.0 0.0 1 8.8 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation DUF2075 PF09848.4 gi|327310260|ref|YP_004337157.1| - 0.0046 15.9 0.0 0.1 11.5 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.4 gi|327310260|ref|YP_004337157.1| - 0.0046 15.6 0.2 2 6.9 0.0 2.4 3 0 0 3 3 2 1 Type IV secretion-system coupling protein DNA-binding domain CobA_CobO_BtuR PF02572.10 gi|327310260|ref|YP_004337157.1| - 0.0083 15.7 0.9 1.5 8.4 0.1 3.2 2 1 0 2 2 2 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RuvB_N PF05496.7 gi|327310260|ref|YP_004337157.1| - 0.014 14.4 0.2 5.6 5.9 0.0 2.7 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|327310260|ref|YP_004337157.1| - 0.015 14.0 0.2 3.1 6.4 0.1 2.2 2 0 0 2 2 2 0 TIP49 C-terminus Mg_chelatase PF01078.16 gi|327310260|ref|YP_004337157.1| - 0.018 14.1 0.6 2 7.5 0.1 2.5 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|327310260|ref|YP_004337157.1| - 0.027 14.7 0.4 0.7 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|327310260|ref|YP_004337157.1| - 0.028 13.9 0.1 2.6 7.5 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Sigma54_activat PF00158.21 gi|327310260|ref|YP_004337157.1| - 0.028 13.8 0.0 8.6 5.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF3419 PF11899.3 gi|327310260|ref|YP_004337157.1| - 0.029 13.0 0.1 0.23 10.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3419) B12-binding PF02310.14 gi|327310260|ref|YP_004337157.1| - 0.031 14.1 0.0 2.5 8.0 0.0 2.8 2 1 0 2 2 2 0 B12 binding domain adh_short_C2 PF13561.1 gi|327310260|ref|YP_004337157.1| - 0.049 13.3 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Thymidylate_kin PF02223.12 gi|327310260|ref|YP_004337157.1| - 0.05 12.9 0.0 1.3 8.3 0.0 2.7 3 0 0 3 3 3 0 Thymidylate kinase KTI12 PF08433.5 gi|327310260|ref|YP_004337157.1| - 0.068 12.3 0.0 2.5 7.2 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ArgK PF03308.11 gi|327310260|ref|YP_004337157.1| - 0.086 11.6 0.3 0.35 9.5 0.0 1.9 2 0 0 2 2 2 0 ArgK protein ResIII PF04851.10 gi|327310260|ref|YP_004337157.1| - 0.088 12.6 0.2 12 5.7 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit UPF0079 PF02367.12 gi|327310260|ref|YP_004337157.1| - 0.11 12.0 0.7 7.7 6.1 0.1 2.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 DEAD PF00270.24 gi|327310260|ref|YP_004337157.1| - 0.13 11.7 0.0 4 6.8 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase DnaB_C PF03796.10 gi|327310260|ref|YP_004337157.1| - 0.13 11.1 0.0 3.2 6.5 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain Miro PF08477.8 gi|327310260|ref|YP_004337157.1| - 0.16 12.4 0.0 1 9.8 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein MMR_HSR1 PF01926.18 gi|327310260|ref|YP_004337157.1| - 0.17 11.8 0.0 1.7 8.5 0.0 2.5 3 0 0 3 3 2 0 50S ribosome-binding GTPase Rad51 PF08423.6 gi|327310260|ref|YP_004337157.1| - 0.17 10.7 0.2 2.8 6.7 0.0 2.4 2 1 0 2 2 2 0 Rad51 Death PF00531.17 gi|327310261|ref|YP_004337158.1| - 0.013 15.2 0.2 0.024 14.4 0.1 1.5 1 1 0 1 1 1 0 Death domain DUF3227 PF11537.3 gi|327310261|ref|YP_004337158.1| - 0.016 15.2 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3227) Peptidase_M19 PF01244.16 gi|327310262|ref|YP_004337159.1| - 3.3e-76 256.2 0.0 3.7e-76 256.1 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|327310262|ref|YP_004337159.1| - 0.0066 16.0 2.1 1.8 8.0 0.0 3.1 1 1 2 3 3 3 2 Amidohydrolase DUF4095 PF13338.1 gi|327310262|ref|YP_004337159.1| - 0.13 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) TYW3 PF02676.9 gi|327310263|ref|YP_004337160.1| - 7e-36 123.2 0.0 9.2e-36 122.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 Amidase_2 PF01510.20 gi|327310263|ref|YP_004337160.1| - 0.12 12.4 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase Ubie_methyltran PF01209.13 gi|327310264|ref|YP_004337161.1| - 2.6e-20 72.5 0.0 3.4e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|327310264|ref|YP_004337161.1| - 1.7e-17 63.6 0.0 3.2e-17 62.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|327310264|ref|YP_004337161.1| - 8.1e-12 45.3 0.0 3.8e-11 43.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|327310264|ref|YP_004337161.1| - 1.2e-10 41.3 0.0 1.5e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327310264|ref|YP_004337161.1| - 5.1e-10 39.1 0.0 9.6e-10 38.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327310264|ref|YP_004337161.1| - 4.9e-09 36.5 0.0 9.7e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310264|ref|YP_004337161.1| - 9.8e-09 35.7 0.0 1.4e-08 35.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|327310264|ref|YP_004337161.1| - 1.7e-06 27.5 0.0 2.6e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|327310264|ref|YP_004337161.1| - 3.2e-05 23.9 0.2 5.2e-05 23.2 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|327310264|ref|YP_004337161.1| - 0.00025 20.2 0.0 0.00037 19.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|327310264|ref|YP_004337161.1| - 0.00064 18.5 0.0 0.0009 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|327310264|ref|YP_004337161.1| - 0.003 17.2 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|327310264|ref|YP_004337161.1| - 0.0059 15.9 0.0 0.0087 15.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|327310264|ref|YP_004337161.1| - 0.014 14.4 0.0 0.033 13.2 0.0 1.5 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|327310265|ref|YP_004337162.1| - 1.7e-07 31.1 0.0 3.3e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|327310265|ref|YP_004337162.1| - 1.1e-05 25.7 0.0 2.3e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310265|ref|YP_004337162.1| - 0.0004 20.9 0.0 0.00077 20.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327310265|ref|YP_004337162.1| - 0.00069 19.2 0.0 0.031 13.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327310265|ref|YP_004337162.1| - 0.028 14.8 0.0 0.062 13.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Desulfoferrod_N PF06397.7 gi|327310266|ref|YP_004337163.1| - 0.011 15.1 0.1 0.02 14.2 0.1 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_2 PF13240.1 gi|327310266|ref|YP_004337163.1| - 0.054 12.9 0.4 0.19 11.2 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|327310266|ref|YP_004337163.1| - 0.071 12.9 0.1 12 5.7 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG DNA_ligase_ZBD PF03119.11 gi|327310266|ref|YP_004337163.1| - 0.11 12.2 0.6 0.11 12.2 0.4 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|327310266|ref|YP_004337163.1| - 0.18 11.0 1.8 0.5 9.6 1.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|327310266|ref|YP_004337163.1| - 0.8 9.4 3.8 0.55 9.9 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Serine_rich PF08824.5 gi|327310267|ref|YP_004337164.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Serine rich protein interaction domain UPF0126 PF03458.8 gi|327310269|ref|YP_004337166.1| - 3.1e-47 158.1 20.0 3.2e-24 84.3 7.2 2.3 2 0 0 2 2 2 2 UPF0126 domain DUF2834 PF11196.3 gi|327310269|ref|YP_004337166.1| - 0.61 10.2 3.7 6.5 6.9 0.1 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF2834) 2_5_RNA_ligase2 PF13563.1 gi|327310271|ref|YP_004337168.1| - 3.6e-11 43.0 0.1 3.8e-10 39.6 0.1 1.9 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|327310271|ref|YP_004337168.1| - 0.00037 20.4 1.3 0.22 11.4 0.1 2.5 1 1 1 2 2 2 2 LigT like Phosphoesterase DUF770 PF05591.7 gi|327310271|ref|YP_004337168.1| - 0.02 14.4 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF770) ABC_tran PF00005.22 gi|327310272|ref|YP_004337169.1| - 1.1e-39 135.8 0.0 1.8e-19 70.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|327310272|ref|YP_004337169.1| - 4.8e-15 56.2 0.8 0.00099 19.1 0.0 4.1 2 2 0 4 4 4 4 AAA domain RLI PF04068.10 gi|327310272|ref|YP_004337169.1| - 2.8e-14 52.4 4.7 6.2e-14 51.2 3.3 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|327310272|ref|YP_004337169.1| - 4.5e-11 42.4 2.5 0.0022 17.2 0.0 3.4 3 1 0 4 4 3 2 RecF/RecN/SMC N terminal domain Fer4_6 PF12837.2 gi|327310272|ref|YP_004337169.1| - 1.1e-08 34.5 13.0 2e-05 24.2 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|327310272|ref|YP_004337169.1| - 2.7e-07 29.8 2.8 2.7e-07 29.8 2.0 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain AAA_17 PF13207.1 gi|327310272|ref|YP_004337169.1| - 2.9e-06 28.0 3.2 0.015 16.1 0.0 3.4 2 2 0 2 2 2 2 AAA domain AAA PF00004.24 gi|327310272|ref|YP_004337169.1| - 8.7e-06 25.9 0.1 0.053 13.7 0.0 3.2 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|327310272|ref|YP_004337169.1| - 2.5e-05 23.7 0.1 0.013 14.8 0.0 3.2 3 0 0 3 3 3 1 AAA domain Fer4_21 PF14697.1 gi|327310272|ref|YP_004337169.1| - 4.3e-05 23.2 9.4 7e-05 22.6 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain SbcCD_C PF13558.1 gi|327310272|ref|YP_004337169.1| - 0.0001 22.1 0.1 0.91 9.4 0.0 3.0 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit Fer4_7 PF12838.2 gi|327310272|ref|YP_004337169.1| - 0.00016 21.9 21.7 0.0017 18.7 1.6 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain MobB PF03205.9 gi|327310272|ref|YP_004337169.1| - 0.00019 21.1 1.3 0.037 13.7 0.4 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Fer4_10 PF13237.1 gi|327310272|ref|YP_004337169.1| - 0.00032 20.4 21.0 0.0023 17.6 7.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327310272|ref|YP_004337169.1| - 0.00034 20.3 11.8 0.00057 19.6 1.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Miro PF08477.8 gi|327310272|ref|YP_004337169.1| - 0.00047 20.6 0.1 0.019 15.4 0.0 2.7 3 0 0 3 3 2 1 Miro-like protein AAA_22 PF13401.1 gi|327310272|ref|YP_004337169.1| - 0.00068 19.7 1.2 0.071 13.2 0.1 3.4 2 2 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|327310272|ref|YP_004337169.1| - 0.0017 18.0 0.2 0.2 11.2 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|327310272|ref|YP_004337169.1| - 0.002 18.1 0.3 0.045 13.7 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain Fer4_9 PF13187.1 gi|327310272|ref|YP_004337169.1| - 0.002 18.3 9.2 0.005 17.0 6.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_33 PF13671.1 gi|327310272|ref|YP_004337169.1| - 0.0021 17.9 0.2 0.048 13.5 0.0 3.0 3 1 0 3 3 3 1 AAA domain DUF258 PF03193.11 gi|327310272|ref|YP_004337169.1| - 0.004 16.3 3.8 0.017 14.2 0.1 3.0 3 0 0 3 3 3 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|327310272|ref|YP_004337169.1| - 0.0054 17.0 0.3 5 7.4 0.0 2.8 3 0 0 3 3 2 0 AAA domain Fer4_16 PF13484.1 gi|327310272|ref|YP_004337169.1| - 0.0075 16.9 6.2 0.0083 16.8 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain MMR_HSR1 PF01926.18 gi|327310272|ref|YP_004337169.1| - 0.0078 16.1 0.0 0.12 12.3 0.0 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|327310272|ref|YP_004337169.1| - 0.0087 15.9 0.1 0.65 9.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain Fer4_11 PF13247.1 gi|327310272|ref|YP_004337169.1| - 0.011 15.5 4.7 0.021 14.7 3.3 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Arch_ATPase PF01637.13 gi|327310272|ref|YP_004337169.1| - 0.013 15.1 0.0 0.13 11.9 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase RuvB_N PF05496.7 gi|327310272|ref|YP_004337169.1| - 0.015 14.3 0.1 2.4 7.1 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus ATP_bind_1 PF03029.12 gi|327310272|ref|YP_004337169.1| - 0.029 13.8 0.6 0.43 10.0 0.1 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein NACHT PF05729.7 gi|327310272|ref|YP_004337169.1| - 0.03 13.9 0.3 0.12 12.0 0.0 2.0 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|327310272|ref|YP_004337169.1| - 0.033 14.3 0.0 0.7 10.0 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Fer4_3 PF12798.2 gi|327310272|ref|YP_004337169.1| - 0.038 14.5 4.8 0.038 14.5 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_23 PF13476.1 gi|327310272|ref|YP_004337169.1| - 0.055 13.7 0.5 2 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|327310272|ref|YP_004337169.1| - 0.061 12.8 3.2 0.52 9.8 0.0 2.6 3 0 0 3 3 2 0 P-loop containing region of AAA domain RecA PF00154.16 gi|327310272|ref|YP_004337169.1| - 0.09 11.8 0.2 2 7.4 0.0 2.1 2 0 0 2 2 2 0 recA bacterial DNA recombination protein Fer4_8 PF13183.1 gi|327310272|ref|YP_004337169.1| - 0.096 12.7 6.0 0.18 11.8 1.2 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain ArgK PF03308.11 gi|327310272|ref|YP_004337169.1| - 0.12 11.1 2.7 0.11 11.2 0.4 1.9 2 0 0 2 2 2 0 ArgK protein ATP-synt_ab PF00006.20 gi|327310272|ref|YP_004337169.1| - 0.15 11.5 0.1 6 6.2 0.0 2.6 3 0 0 3 3 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.1 gi|327310272|ref|YP_004337169.1| - 0.27 11.1 2.3 5.5 6.9 0.1 3.4 4 0 0 4 4 3 0 AAA domain NB-ARC PF00931.17 gi|327310272|ref|YP_004337169.1| - 0.69 8.7 4.1 5.2 5.8 0.4 2.3 2 0 0 2 2 2 0 NB-ARC domain Fer4_15 PF13459.1 gi|327310272|ref|YP_004337169.1| - 0.78 10.3 10.4 0.39 11.3 1.9 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain NTPase_1 PF03266.10 gi|327310272|ref|YP_004337169.1| - 0.81 9.3 3.8 1.6 8.3 0.2 2.9 3 0 0 3 3 3 0 NTPase Fer4_18 PF13746.1 gi|327310272|ref|YP_004337169.1| - 1.2 9.5 8.5 0.08 13.3 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327310272|ref|YP_004337169.1| - 1.5 9.2 9.1 28 5.1 6.3 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|327310272|ref|YP_004337169.1| - 2.1 8.8 13.1 0.15 12.4 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_24 PF13479.1 gi|327310272|ref|YP_004337169.1| - 2.4 7.7 4.1 1 8.9 0.1 2.4 3 0 0 3 3 3 0 AAA domain zf-NADH-PPase PF09297.6 gi|327310273|ref|YP_004337170.1| - 9.1e-06 25.0 0.1 2.5e-05 23.6 0.1 1.7 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|327310273|ref|YP_004337170.1| - 0.00038 20.0 0.1 0.00077 19.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.1 gi|327310273|ref|YP_004337170.1| - 0.0019 17.3 0.2 0.0019 17.3 0.2 1.7 2 0 0 2 2 2 1 Transcription factor zinc-finger DZR PF12773.2 gi|327310273|ref|YP_004337170.1| - 0.0023 17.6 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon FYDLN_acid PF09538.5 gi|327310273|ref|YP_004337170.1| - 0.004 17.7 0.7 0.004 17.7 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) DUF2387 PF09526.5 gi|327310273|ref|YP_004337170.1| - 0.0068 16.3 0.4 0.0094 15.8 0.2 1.4 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) DUF2072 PF09845.4 gi|327310273|ref|YP_004337170.1| - 0.012 15.5 0.5 0.013 15.4 0.4 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zinc_ribbon_2 PF13240.1 gi|327310273|ref|YP_004337170.1| - 0.024 14.1 1.0 0.082 12.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327310273|ref|YP_004337170.1| - 0.037 13.2 0.6 0.4 9.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|327310273|ref|YP_004337170.1| - 0.04 13.9 0.6 0.74 9.8 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.1 gi|327310273|ref|YP_004337170.1| - 0.11 12.4 1.1 0.34 10.8 0.8 1.7 1 1 0 1 1 1 0 CpXC protein OrfB_Zn_ribbon PF07282.6 gi|327310273|ref|YP_004337170.1| - 0.12 12.0 0.1 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|327310273|ref|YP_004337170.1| - 0.2 11.4 2.0 0.85 9.4 1.6 1.8 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) UPF0547 PF10571.4 gi|327310273|ref|YP_004337170.1| - 0.37 10.5 1.8 0.63 9.7 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TPP_enzyme_C PF02775.16 gi|327310274|ref|YP_004337171.1| - 5.4e-21 74.7 0.1 1.6e-20 73.2 0.1 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|327310274|ref|YP_004337171.1| - 1.8e-15 57.0 0.1 3.7e-15 56.0 0.1 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|327310274|ref|YP_004337171.1| - 3.9e-10 38.8 10.1 5.4e-08 32.1 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|327310274|ref|YP_004337171.1| - 4e-06 26.4 3.8 0.0024 17.3 0.1 2.7 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_6 PF12837.2 gi|327310274|ref|YP_004337171.1| - 4.5e-06 26.2 1.9 4.5e-06 26.2 1.3 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|327310274|ref|YP_004337171.1| - 2.4e-05 24.5 10.0 0.0014 18.9 7.8 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|327310274|ref|YP_004337171.1| - 6.9e-05 22.6 4.5 0.00012 21.8 3.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327310274|ref|YP_004337171.1| - 8.4e-05 22.2 11.4 0.0017 18.1 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|327310274|ref|YP_004337171.1| - 0.00076 19.2 11.9 0.0012 18.5 1.7 2.4 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327310274|ref|YP_004337171.1| - 0.00086 19.1 9.5 0.0029 17.4 6.7 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327310274|ref|YP_004337171.1| - 0.0053 17.4 0.8 0.0053 17.4 0.6 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|327310274|ref|YP_004337171.1| - 0.011 16.0 6.1 0.041 14.2 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain E1_dh PF00676.15 gi|327310274|ref|YP_004337171.1| - 0.033 12.9 0.0 0.061 12.0 0.0 1.3 1 0 0 1 1 1 0 Dehydrogenase E1 component Fer4_9 PF13187.1 gi|327310274|ref|YP_004337171.1| - 0.053 13.7 11.3 0.075 13.3 2.1 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|327310274|ref|YP_004337171.1| - 0.18 11.8 10.8 0.49 10.4 7.5 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain DXP_synthase_N PF13292.1 gi|327310274|ref|YP_004337171.1| - 0.23 10.3 0.1 0.6 8.9 0.0 1.7 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_15 PF13459.1 gi|327310274|ref|YP_004337171.1| - 0.46 11.0 10.2 0.17 12.4 1.0 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain PQQ_3 PF13570.1 gi|327310274|ref|YP_004337171.1| - 0.73 10.1 5.4 1.5 9.2 0.1 3.6 3 1 0 3 3 3 0 PQQ-like domain POR PF01558.13 gi|327310275|ref|YP_004337172.1| - 3.6e-27 95.3 0.0 5.1e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase RIO1 PF01163.17 gi|327310276|ref|YP_004337173.1| - 1.3e-52 177.8 0.0 2e-52 177.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|327310276|ref|YP_004337173.1| - 2.2e-05 23.7 0.0 4.5e-05 22.7 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|327310276|ref|YP_004337173.1| - 0.0003 20.5 0.9 0.00087 19.0 0.2 1.9 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|327310276|ref|YP_004337173.1| - 0.0016 17.5 0.1 0.41 9.6 0.0 2.6 2 1 1 3 3 3 2 Lipopolysaccharide kinase (Kdo/WaaP) family Choline_kinase PF01633.15 gi|327310276|ref|YP_004337173.1| - 0.094 12.2 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Choline/ethanolamine kinase KH_1 PF00013.24 gi|327310277|ref|YP_004337174.1| - 1.1e-05 24.9 2.5 1.9e-05 24.2 1.0 1.8 2 0 0 2 2 2 1 KH domain Ribosomal_S3Ae PF01015.13 gi|327310278|ref|YP_004337175.1| - 2.2e-61 206.6 0.0 2.5e-61 206.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Pox_VLTF3 PF04947.9 gi|327310280|ref|YP_004337177.1| - 0.11 12.0 3.2 0.094 12.2 1.0 1.7 2 0 0 2 2 2 0 Poxvirus Late Transcription Factor VLTF3 like Ribosomal_S13_N PF08069.7 gi|327310281|ref|YP_004337178.1| - 1.2e-25 89.1 0.0 2.6e-25 87.9 0.0 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|327310281|ref|YP_004337178.1| - 3.3e-20 71.6 0.3 5.2e-20 71.0 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Surf_Ag_VNR PF07244.10 gi|327310281|ref|YP_004337178.1| - 0.1 12.9 0.0 1.8 9.0 0.0 2.2 2 0 0 2 2 2 0 Surface antigen variable number repeat CMAS PF02353.15 gi|327310282|ref|YP_004337179.1| - 1.5e-07 30.8 0.0 1.8e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.2 gi|327310282|ref|YP_004337179.1| - 8.4e-07 29.5 0.0 1.5e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327310282|ref|YP_004337179.1| - 1.2e-06 28.2 0.0 1.4e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|327310282|ref|YP_004337179.1| - 1.6e-06 27.5 0.0 1e-05 24.9 0.0 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_26 PF13659.1 gi|327310282|ref|YP_004337179.1| - 8.5e-05 22.5 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain HTH_24 PF13412.1 gi|327310282|ref|YP_004337179.1| - 0.00094 18.5 0.1 0.0028 17.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Methyltransf_25 PF13649.1 gi|327310282|ref|YP_004337179.1| - 0.0014 18.9 0.0 0.0025 18.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|327310282|ref|YP_004337179.1| - 0.0019 17.3 0.0 0.0028 16.7 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase DUF2172 PF09940.4 gi|327310282|ref|YP_004337179.1| - 0.0021 16.4 0.0 0.003 16.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2172) HTH_20 PF12840.2 gi|327310282|ref|YP_004337179.1| - 0.0021 17.8 0.0 0.0037 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PCMT PF01135.14 gi|327310282|ref|YP_004337179.1| - 0.0039 16.7 0.0 0.0058 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|327310282|ref|YP_004337179.1| - 0.0039 16.2 0.0 0.011 14.8 0.0 1.6 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase TrmB PF01978.14 gi|327310282|ref|YP_004337179.1| - 0.0071 16.0 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|327310282|ref|YP_004337179.1| - 0.01 16.1 0.1 0.033 14.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|327310282|ref|YP_004337179.1| - 0.013 15.6 0.1 0.037 14.1 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator HTH_5 PF01022.15 gi|327310282|ref|YP_004337179.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MetW PF07021.7 gi|327310282|ref|YP_004337179.1| - 0.016 14.5 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW GntR PF00392.16 gi|327310282|ref|YP_004337179.1| - 0.024 14.0 0.0 0.27 10.7 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|327310282|ref|YP_004337179.1| - 0.034 13.6 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.12 gi|327310282|ref|YP_004337179.1| - 0.035 13.6 0.1 0.12 11.8 0.0 1.9 2 0 0 2 2 1 0 TFIIE alpha subunit Methyltransf_23 PF13489.1 gi|327310282|ref|YP_004337179.1| - 0.055 13.1 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HTH_CodY PF08222.6 gi|327310282|ref|YP_004337179.1| - 0.059 12.7 0.1 0.28 10.5 0.1 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain MarR_2 PF12802.2 gi|327310282|ref|YP_004337179.1| - 0.066 12.8 0.0 0.17 11.6 0.0 1.6 2 0 0 2 2 1 0 MarR family MarR PF01047.17 gi|327310282|ref|YP_004337179.1| - 0.076 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Methyltransf_12 PF08242.7 gi|327310282|ref|YP_004337179.1| - 0.077 13.4 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain SgrR_N PF12793.2 gi|327310282|ref|YP_004337179.1| - 0.084 12.8 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term Methyltransf_11 PF08241.7 gi|327310282|ref|YP_004337179.1| - 0.11 13.0 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain HrcA_DNA-bdg PF03444.10 gi|327310282|ref|YP_004337179.1| - 0.14 11.5 0.1 0.31 10.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Methyltransf_32 PF13679.1 gi|327310282|ref|YP_004337179.1| - 0.14 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DS PF01916.12 gi|327310283|ref|YP_004337180.1| - 2.5e-66 223.8 0.0 2.8e-66 223.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Glycos_transf_4 PF00953.16 gi|327310284|ref|YP_004337181.1| - 7.9e-26 90.7 11.7 7.9e-26 90.7 8.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 4 Ras PF00071.17 gi|327310285|ref|YP_004337182.1| - 1.4e-06 27.8 0.0 1.5e-05 24.4 0.0 2.0 1 1 0 1 1 1 1 Ras family PduV-EutP PF10662.4 gi|327310285|ref|YP_004337182.1| - 0.00019 20.9 0.0 0.00055 19.4 0.0 1.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.16 gi|327310285|ref|YP_004337182.1| - 0.00025 20.3 0.0 0.00029 20.1 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|327310285|ref|YP_004337182.1| - 0.00036 21.0 0.0 0.00086 19.7 0.0 1.6 1 1 0 1 1 1 1 Miro-like protein MMR_HSR1 PF01926.18 gi|327310285|ref|YP_004337182.1| - 0.00085 19.2 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|327310285|ref|YP_004337182.1| - 0.0018 17.5 0.0 0.0068 15.7 0.0 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B Viral_helicase1 PF01443.13 gi|327310285|ref|YP_004337182.1| - 0.12 11.9 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Hydrolase_3 PF08282.7 gi|327310287|ref|YP_004337184.1| - 8e-26 91.1 0.0 1.3e-13 51.1 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|327310287|ref|YP_004337184.1| - 3.3e-11 42.9 0.0 3.3e-10 39.7 0.0 1.9 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|327310287|ref|YP_004337184.1| - 1.7e-07 31.8 0.4 0.0008 19.8 0.0 2.9 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|327310287|ref|YP_004337184.1| - 4.8e-07 30.1 0.0 5.6e-05 23.4 0.0 2.5 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|327310287|ref|YP_004337184.1| - 0.027 14.3 0.0 0.057 13.3 0.0 1.5 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|327310287|ref|YP_004337184.1| - 0.12 11.2 0.0 3.8 6.3 0.0 2.1 2 0 0 2 2 2 0 Trehalose-phosphatase CBS PF00571.23 gi|327310289|ref|YP_004337186.1| - 8.2e-33 111.9 1.9 1.7e-16 59.6 0.1 2.1 2 0 0 2 2 2 2 CBS domain VWA_2 PF13519.1 gi|327310290|ref|YP_004337187.1| - 7e-06 26.2 1.6 5.4e-05 23.3 1.2 2.3 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|327310290|ref|YP_004337187.1| - 0.00073 18.7 1.0 0.0027 16.8 0.7 1.8 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein DUF445 PF04286.7 gi|327310290|ref|YP_004337187.1| - 0.025 14.1 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF445) AAA_5 PF07728.9 gi|327310291|ref|YP_004337188.1| - 4.2e-25 88.1 0.0 9.3e-25 86.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|327310291|ref|YP_004337188.1| - 3.7e-05 23.9 0.0 9.7e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|327310291|ref|YP_004337188.1| - 0.00014 21.4 0.0 0.00026 20.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|327310291|ref|YP_004337188.1| - 0.0004 19.6 0.0 0.0015 17.7 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|327310291|ref|YP_004337188.1| - 0.011 15.1 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.1 gi|327310291|ref|YP_004337188.1| - 0.053 13.4 0.0 0.1 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain HCV_NS4a PF01006.15 gi|327310291|ref|YP_004337188.1| - 0.056 12.9 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Bac_Ubq_Cox PF01654.12 gi|327310292|ref|YP_004337189.1| - 0.026 12.9 1.7 0.027 12.9 1.2 1.1 1 0 0 1 1 1 0 Bacterial Cytochrome Ubiquinol Oxidase Chromate_transp PF02417.10 gi|327310292|ref|YP_004337189.1| - 0.27 10.8 5.3 0.3 10.6 3.7 1.1 1 0 0 1 1 1 0 Chromate transporter HTH_5 PF01022.15 gi|327310293|ref|YP_004337190.1| - 5.3e-07 29.1 0.1 8.6e-07 28.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|327310293|ref|YP_004337190.1| - 1.8e-06 27.6 0.2 4.7e-06 26.3 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|327310293|ref|YP_004337190.1| - 5.6e-05 22.7 0.0 6.7e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|327310293|ref|YP_004337190.1| - 0.0027 17.3 0.1 0.0036 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain B-block_TFIIIC PF04182.7 gi|327310293|ref|YP_004337190.1| - 0.01 15.6 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC PaaX PF07848.7 gi|327310293|ref|YP_004337190.1| - 0.011 15.6 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 PaaX-like protein FeoC PF09012.5 gi|327310293|ref|YP_004337190.1| - 0.014 15.1 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_24 PF13412.1 gi|327310293|ref|YP_004337190.1| - 0.016 14.5 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|327310293|ref|YP_004337190.1| - 0.02 14.5 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|327310293|ref|YP_004337190.1| - 0.026 14.3 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|327310293|ref|YP_004337190.1| - 0.03 14.2 0.1 0.042 13.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) NUMOD1 PF07453.8 gi|327310293|ref|YP_004337190.1| - 0.033 14.0 0.0 4.7 7.1 0.0 2.2 2 0 0 2 2 2 0 NUMOD1 domain MarR PF01047.17 gi|327310293|ref|YP_004337190.1| - 0.04 13.6 0.0 0.052 13.2 0.0 1.1 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.11 gi|327310293|ref|YP_004337190.1| - 0.074 12.6 0.1 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain DUF4423 PF14394.1 gi|327310293|ref|YP_004337190.1| - 0.096 12.2 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_DeoR PF08220.7 gi|327310293|ref|YP_004337190.1| - 0.1 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|327310293|ref|YP_004337190.1| - 0.13 11.8 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.7 gi|327310293|ref|YP_004337190.1| - 0.14 12.3 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.15 gi|327310293|ref|YP_004337190.1| - 0.14 12.2 0.0 0.17 12.0 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator zf-CDGSH PF09360.5 gi|327310296|ref|YP_004337193.1| - 5.7e-13 48.4 0.3 7e-13 48.1 0.2 1.2 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type PBP_like PF12727.2 gi|327310297|ref|YP_004337194.1| - 5.1e-45 152.7 0.4 2.3e-44 150.6 0.1 1.9 2 0 0 2 2 2 1 PBP superfamily domain HTH_1 PF00126.22 gi|327310297|ref|YP_004337194.1| - 1e-12 47.5 3.0 1.1e-11 44.2 0.0 3.7 4 0 0 4 4 4 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|327310297|ref|YP_004337194.1| - 0.00011 22.0 4.3 0.017 15.1 0.8 3.3 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_8 PF02954.14 gi|327310297|ref|YP_004337194.1| - 0.0011 18.4 0.4 0.0028 17.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family Phosphonate-bd PF12974.2 gi|327310297|ref|YP_004337194.1| - 0.044 13.1 0.0 0.11 11.8 0.0 1.7 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein HTH_Tnp_ISL3 PF13542.1 gi|327310297|ref|YP_004337194.1| - 0.11 11.6 0.0 0.85 8.8 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 Ftsk_gamma PF09397.5 gi|327310297|ref|YP_004337194.1| - 0.14 11.8 0.2 0.51 10.0 0.0 2.1 2 0 0 2 2 2 0 Ftsk gamma domain HTH_psq PF05225.11 gi|327310297|ref|YP_004337194.1| - 0.44 10.1 3.3 5.8 6.5 0.0 3.3 3 0 0 3 3 3 0 helix-turn-helix, Psq domain DUF4645 PF15488.1 gi|327310298|ref|YP_004337195.1| - 0.019 14.1 0.0 0.021 14.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4645) DUF3592 PF12158.3 gi|327310298|ref|YP_004337195.1| - 0.095 12.4 0.0 35 4.1 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3592) IncA PF04156.9 gi|327310298|ref|YP_004337195.1| - 4.6 6.7 13.1 0.4 10.2 0.9 2.1 2 0 0 2 2 2 0 IncA protein DUF2244 PF10003.4 gi|327310298|ref|YP_004337195.1| - 8.4 5.7 7.6 5.4 6.3 0.3 2.2 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) MarR_2 PF12802.2 gi|327310299|ref|YP_004337196.1| - 2.9e-06 26.8 0.2 5.6e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|327310299|ref|YP_004337196.1| - 1.8e-05 24.0 0.1 3.3e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|327310299|ref|YP_004337196.1| - 6.4e-05 22.5 0.1 0.00012 21.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|327310299|ref|YP_004337196.1| - 9.4e-05 22.1 0.3 0.00017 21.3 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|327310299|ref|YP_004337196.1| - 0.00011 21.8 0.2 0.00063 19.3 0.0 2.3 2 1 0 2 2 2 1 AsnC family HTH_Crp_2 PF13545.1 gi|327310299|ref|YP_004337196.1| - 0.00072 19.3 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|327310299|ref|YP_004337196.1| - 0.0044 16.6 0.2 0.012 15.2 0.1 1.7 1 1 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|327310299|ref|YP_004337196.1| - 0.015 15.6 0.4 0.029 14.6 0.1 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_8 PF02954.14 gi|327310299|ref|YP_004337196.1| - 0.016 14.7 0.3 0.037 13.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma70_r4_2 PF08281.7 gi|327310299|ref|YP_004337196.1| - 0.034 13.6 0.0 0.08 12.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|327310299|ref|YP_004337196.1| - 0.048 13.2 0.2 0.1 12.1 0.2 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_23 PF13384.1 gi|327310299|ref|YP_004337196.1| - 0.059 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.14 gi|327310299|ref|YP_004337196.1| - 0.062 13.0 0.3 0.22 11.2 0.0 2.0 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|327310299|ref|YP_004337196.1| - 0.092 12.8 0.1 0.63 10.1 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator 2-Hacid_dh PF00389.25 gi|327310299|ref|YP_004337196.1| - 0.12 11.8 0.1 0.46 9.9 0.1 1.9 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PFK PF00365.15 gi|327310300|ref|YP_004337197.1| - 3.9e-73 245.8 0.2 5.2e-73 245.4 0.2 1.2 1 0 0 1 1 1 1 Phosphofructokinase DeoC PF01791.4 gi|327310301|ref|YP_004337198.1| - 3.8e-35 121.2 0.0 4.5e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|327310301|ref|YP_004337198.1| - 0.029 13.6 0.1 0.18 11.0 0.0 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Phosphodiest PF01663.17 gi|327310302|ref|YP_004337199.1| - 0.0025 17.1 2.5 0.016 14.5 1.7 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4434 PF14488.1 gi|327310304|ref|YP_004337201.1| - 5e-05 23.0 0.2 0.00046 19.9 0.1 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4434) Cellulase-like PF12876.2 gi|327310304|ref|YP_004337201.1| - 0.049 14.0 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 Sugar-binding cellulase-like HhH-GPD PF00730.20 gi|327310305|ref|YP_004337202.1| - 8.4e-21 74.2 0.0 1e-20 73.9 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|327310305|ref|YP_004337202.1| - 1e-05 25.4 7.2 1.9e-05 24.6 5.0 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|327310305|ref|YP_004337202.1| - 3.5e-05 23.2 0.0 9.2e-05 21.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|327310305|ref|YP_004337202.1| - 0.00039 20.5 0.2 0.0073 16.4 0.2 2.5 1 1 0 1 1 1 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|327310305|ref|YP_004337202.1| - 0.00062 19.6 0.4 0.13 12.4 0.0 2.9 2 0 0 2 2 2 1 IMS family HHH motif Transposase_20 PF02371.11 gi|327310305|ref|YP_004337202.1| - 0.0075 16.3 0.0 0.021 14.9 0.0 1.8 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family HHH_8 PF14716.1 gi|327310305|ref|YP_004337202.1| - 0.14 12.3 0.0 0.59 10.3 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF3650 PF12368.3 gi|327310306|ref|YP_004337203.1| - 0.011 15.2 0.3 0.49 9.9 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3650) HTH_AsnC-type PF13404.1 gi|327310306|ref|YP_004337203.1| - 1.1 8.8 5.9 12 5.4 0.0 2.9 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Herpes_Helicase PF02689.9 gi|327310307|ref|YP_004337204.1| - 0.00058 17.7 0.0 0.00074 17.4 0.0 1.1 1 0 0 1 1 1 1 Helicase Arch_ATPase PF01637.13 gi|327310307|ref|YP_004337204.1| - 0.0092 15.7 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|327310307|ref|YP_004337204.1| - 0.014 16.1 0.0 0.02 15.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain TPR_6 PF13174.1 gi|327310307|ref|YP_004337204.1| - 0.059 13.8 0.0 0.31 11.6 0.0 2.3 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_16 PF13191.1 gi|327310307|ref|YP_004337204.1| - 0.06 13.3 0.0 0.096 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain YfiO PF13525.1 gi|327310307|ref|YP_004337204.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein PQQ_2 PF13360.1 gi|327310309|ref|YP_004337206.1| - 0.069 12.5 0.3 0.15 11.4 0.2 1.5 1 1 0 1 1 1 0 PQQ-like domain GARS_C PF02843.11 gi|327310309|ref|YP_004337206.1| - 0.12 12.5 0.5 0.8 9.9 0.1 2.0 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, C domain Peptidase_M32 PF02074.10 gi|327310310|ref|YP_004337207.1| - 1.2e-184 614.6 0.2 1.3e-184 614.4 0.2 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase ABC2_membrane PF01061.19 gi|327310312|ref|YP_004337209.1| - 4.7e-09 35.7 13.8 4.7e-09 35.7 9.5 1.5 2 0 0 2 2 2 1 ABC-2 type transporter DUF4400 PF14348.1 gi|327310312|ref|YP_004337209.1| - 1.7 7.9 7.9 0.67 9.3 3.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4400) Thg1 PF04446.7 gi|327310313|ref|YP_004337210.1| - 1.8e-18 66.4 0.0 2.5e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thiolase_N PF00108.18 gi|327310314|ref|YP_004337211.1| - 2.7e-83 278.9 0.0 3.3e-83 278.6 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|327310314|ref|YP_004337211.1| - 5.2e-38 129.2 0.1 4.7e-37 126.1 0.0 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|327310314|ref|YP_004337211.1| - 3.5e-06 26.6 3.6 3.8e-06 26.5 1.4 1.9 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|327310314|ref|YP_004337211.1| - 0.022 14.4 0.6 7.9 6.2 0.1 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III His_biosynth PF00977.16 gi|327310315|ref|YP_004337212.1| - 1.2e-81 273.3 0.5 1.4e-81 273.1 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|327310315|ref|YP_004337212.1| - 1.6e-07 30.4 0.0 2.5e-05 23.2 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|327310315|ref|YP_004337212.1| - 4.8e-07 29.0 0.0 0.00011 21.2 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|327310315|ref|YP_004337212.1| - 8e-07 28.3 0.4 0.0033 16.5 0.0 2.4 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|327310315|ref|YP_004337212.1| - 6.6e-06 25.4 1.9 0.033 13.3 0.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.12 gi|327310315|ref|YP_004337212.1| - 1.2e-05 24.4 0.1 0.024 13.7 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|327310315|ref|YP_004337212.1| - 2.2e-05 23.8 0.3 0.00044 19.5 0.1 2.3 2 1 0 2 2 2 1 PcrB family IMPDH PF00478.20 gi|327310315|ref|YP_004337212.1| - 0.0018 17.2 1.4 0.033 13.0 0.1 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|327310315|ref|YP_004337212.1| - 0.006 15.4 0.1 0.013 14.3 0.1 1.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase G3P_antiterm PF04309.7 gi|327310315|ref|YP_004337212.1| - 0.016 14.2 0.1 0.037 13.0 0.0 1.5 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.15 gi|327310315|ref|YP_004337212.1| - 0.019 13.5 0.1 0.11 11.0 0.1 2.0 2 0 0 2 2 2 0 Tryptophan synthase alpha chain PEP_mutase PF13714.1 gi|327310315|ref|YP_004337212.1| - 0.042 13.0 0.3 0.17 11.0 0.0 2.0 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase Response_reg PF00072.19 gi|327310315|ref|YP_004337212.1| - 0.049 13.6 0.0 1.8 8.6 0.0 2.6 2 1 1 3 3 3 0 Response regulator receiver domain IGPD PF00475.13 gi|327310316|ref|YP_004337213.1| - 3e-46 156.8 0.0 3.5e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|327310317|ref|YP_004337214.1| - 5.6e-48 163.1 0.0 6.3e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein GATase PF00117.23 gi|327310318|ref|YP_004337215.1| - 1e-35 122.9 0.0 2e-35 121.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.17 gi|327310318|ref|YP_004337215.1| - 5.1e-31 106.2 0.0 1.1e-30 105.1 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain Peptidase_C26 PF07722.8 gi|327310318|ref|YP_004337215.1| - 3.5e-13 49.5 0.0 5.5e-12 45.6 0.0 2.6 1 1 0 1 1 1 1 Peptidase C26 NAD_synthase PF02540.12 gi|327310318|ref|YP_004337215.1| - 7.8e-09 34.7 0.0 7e-05 21.8 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|327310318|ref|YP_004337215.1| - 0.0014 17.2 0.0 0.0055 15.3 0.0 1.8 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|327310318|ref|YP_004337215.1| - 0.0028 17.1 0.0 0.0044 16.5 0.0 1.4 1 0 0 1 1 1 1 PP-loop family Asn_synthase PF00733.16 gi|327310318|ref|YP_004337215.1| - 0.0035 16.8 0.0 0.042 13.3 0.0 2.2 2 0 0 2 2 2 1 Asparagine synthase PAPS_reduct PF01507.14 gi|327310318|ref|YP_004337215.1| - 0.055 13.2 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|327310318|ref|YP_004337215.1| - 0.058 12.6 0.0 0.94 8.7 0.0 2.3 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|327310318|ref|YP_004337215.1| - 0.068 12.6 0.1 0.21 11.0 0.0 1.8 3 0 0 3 3 3 0 Thiamine biosynthesis protein (ThiI) CitMHS PF03600.11 gi|327310319|ref|YP_004337216.1| - 1.2e-21 76.7 36.7 1.4e-19 69.9 21.2 2.2 2 0 0 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|327310319|ref|YP_004337216.1| - 0.00075 18.4 33.0 0.0054 15.6 9.8 3.5 3 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region DUF3397 PF11877.3 gi|327310319|ref|YP_004337216.1| - 0.26 11.2 0.1 0.26 11.2 0.1 4.2 3 1 1 4 4 4 0 Protein of unknown function (DUF3397) DUF4147 PF13660.1 gi|327310320|ref|YP_004337217.1| - 7.2e-54 182.4 0.3 1e-53 181.9 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|327310320|ref|YP_004337217.1| - 6.9e-26 90.4 0.1 1.9e-25 89.0 0.1 1.7 1 0 0 1 1 1 1 MOFRL family LigB PF02900.13 gi|327310320|ref|YP_004337217.1| - 0.089 11.7 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Na_Ca_ex PF01699.19 gi|327310321|ref|YP_004337218.1| - 1.5e-18 66.7 13.0 8.6e-11 41.6 1.7 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein ILVD_EDD PF00920.16 gi|327310322|ref|YP_004337219.1| - 7.1e-202 671.4 0.0 8e-202 671.2 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family NADH_u_ox_C PF12853.2 gi|327310322|ref|YP_004337219.1| - 0.13 12.0 0.0 0.63 9.7 0.0 2.0 2 0 0 2 2 2 0 C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit COXG PF06240.8 gi|327310323|ref|YP_004337220.1| - 8.2e-22 77.3 0.1 1e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) NTP_transf_3 PF12804.2 gi|327310324|ref|YP_004337221.1| - 1.3e-36 126.1 0.1 1.6e-36 125.8 0.1 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.11 gi|327310324|ref|YP_004337221.1| - 0.00063 18.7 0.0 0.00073 18.5 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like IspD PF01128.14 gi|327310324|ref|YP_004337221.1| - 0.097 12.1 0.1 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EamA PF00892.15 gi|327310325|ref|YP_004337222.1| - 4.7e-13 49.2 29.7 2.5e-10 40.4 5.7 2.5 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|327310325|ref|YP_004337222.1| - 0.00069 19.7 6.2 0.00069 19.7 4.3 3.8 1 1 3 4 4 4 1 Multidrug resistance efflux transporter Transport_MerF PF11431.3 gi|327310325|ref|YP_004337222.1| - 0.018 14.6 1.2 0.13 11.9 0.8 2.5 1 0 0 1 1 1 0 Membrane transport protein MerF Aldo_ket_red PF00248.16 gi|327310326|ref|YP_004337223.1| - 2.3e-62 210.3 0.0 2.7e-62 210.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Peptidase_M28 PF04389.12 gi|327310327|ref|YP_004337224.1| - 1.6e-09 37.7 0.0 2.6e-08 33.8 0.0 2.4 1 1 1 2 2 2 1 Peptidase family M28 Peptidase_M20 PF01546.23 gi|327310327|ref|YP_004337224.1| - 0.089 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 CTP_transf_2 PF01467.21 gi|327310328|ref|YP_004337225.1| - 2.9e-08 33.9 0.0 4.3e-08 33.3 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|327310328|ref|YP_004337225.1| - 0.0046 16.5 0.0 0.012 15.2 0.0 1.8 2 0 0 2 2 2 1 FAD synthetase ResIII PF04851.10 gi|327310329|ref|YP_004337226.1| - 4.9e-29 101.4 0.0 3e-27 95.6 0.0 2.6 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|327310329|ref|YP_004337226.1| - 5.1e-17 61.4 0.1 1e-16 60.5 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|327310329|ref|YP_004337226.1| - 4.2e-16 58.8 0.0 1.5e-15 57.1 0.0 1.9 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|327310329|ref|YP_004337226.1| - 0.0012 18.5 0.1 0.016 14.9 0.0 2.7 3 0 0 3 3 3 1 Part of AAA domain AAA_22 PF13401.1 gi|327310329|ref|YP_004337226.1| - 0.027 14.6 0.0 0.56 10.3 0.0 2.8 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|327310329|ref|YP_004337226.1| - 0.072 12.5 0.0 0.19 11.1 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein FtsQ PF03799.10 gi|327310329|ref|YP_004337226.1| - 0.11 12.7 0.0 6.8 6.9 0.0 2.9 3 1 0 3 3 3 0 Cell division protein FtsQ DUF790 PF05626.6 gi|327310330|ref|YP_004337227.1| - 6.6e-91 304.6 0.0 7.5e-91 304.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Peptidase_M20 PF01546.23 gi|327310331|ref|YP_004337228.1| - 1.1e-37 129.4 0.0 1.4e-37 129.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|327310331|ref|YP_004337228.1| - 3.4e-20 71.8 0.0 6.1e-20 71.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF1152 PF06626.7 gi|327310332|ref|YP_004337229.1| - 1.3e-85 287.1 0.1 1.5e-85 286.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) ADH_N PF08240.7 gi|327310333|ref|YP_004337230.1| - 4.5e-35 119.7 0.1 6.5e-35 119.1 0.1 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|327310333|ref|YP_004337230.1| - 5.5e-16 58.2 0.2 6.3e-14 51.6 0.1 2.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|327310333|ref|YP_004337230.1| - 4.9e-12 46.8 0.2 1.3e-11 45.5 0.0 1.8 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|327310333|ref|YP_004337230.1| - 0.00035 20.6 0.2 0.0011 19.1 0.1 1.8 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|327310333|ref|YP_004337230.1| - 0.0013 18.7 0.1 0.0021 18.0 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding Pyr_redox PF00070.22 gi|327310333|ref|YP_004337230.1| - 0.0035 17.7 0.4 0.0071 16.7 0.3 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|327310333|ref|YP_004337230.1| - 0.0038 17.4 0.0 0.0061 16.7 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|327310333|ref|YP_004337230.1| - 0.0057 15.7 0.2 0.0082 15.2 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|327310333|ref|YP_004337230.1| - 0.023 14.2 0.3 0.042 13.4 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.11 gi|327310333|ref|YP_004337230.1| - 0.047 13.1 0.1 0.074 12.4 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.9 gi|327310333|ref|YP_004337230.1| - 0.054 11.9 0.2 0.072 11.5 0.1 1.1 1 0 0 1 1 1 0 HI0933-like protein 2-Hacid_dh_C PF02826.14 gi|327310333|ref|YP_004337230.1| - 0.056 12.5 0.2 0.087 11.9 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain tRNA_deacylase PF04414.7 gi|327310334|ref|YP_004337231.1| - 4.6e-41 140.2 0.0 6.7e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase MIF4G_like PF09088.6 gi|327310335|ref|YP_004337232.1| - 0.0042 16.5 0.1 0.005 16.3 0.1 1.0 1 0 0 1 1 1 1 MIF4G like Takusan PF04822.8 gi|327310335|ref|YP_004337232.1| - 0.025 14.3 0.1 0.034 13.8 0.1 1.3 1 0 0 1 1 1 0 Takusan Hormone_1 PF00103.15 gi|327310335|ref|YP_004337232.1| - 0.028 13.7 0.2 0.031 13.6 0.1 1.1 1 0 0 1 1 1 0 Somatotropin hormone family HK97-gp10_like PF04883.7 gi|327310335|ref|YP_004337232.1| - 0.18 12.7 0.3 8.6 7.3 0.1 2.1 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component UPF0160 PF03690.8 gi|327310336|ref|YP_004337233.1| - 0.018 14.4 0.0 0.5 9.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0160) SCP2 PF02036.12 gi|327310337|ref|YP_004337234.1| - 0.0005 20.3 0.0 0.00063 19.9 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family Class_IIIsignal PF04021.7 gi|327310338|ref|YP_004337235.1| - 0.0018 17.9 2.8 0.0018 17.9 1.9 2.5 2 0 0 2 2 2 1 Class III signal peptide PEGA PF08308.6 gi|327310338|ref|YP_004337235.1| - 0.12 12.2 2.6 0.5 10.1 0.5 2.3 1 1 1 2 2 2 0 PEGA domain DUF162 PF02589.10 gi|327310339|ref|YP_004337236.1| - 5.2e-50 169.6 0.3 8.3e-50 168.9 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|327310339|ref|YP_004337236.1| - 8.7e-09 35.2 1.5 1.5e-08 34.4 1.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327310339|ref|YP_004337236.1| - 4.3e-06 27.0 3.5 0.027 14.8 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327310339|ref|YP_004337236.1| - 8.1e-05 22.9 4.7 0.00017 21.9 3.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327310339|ref|YP_004337236.1| - 8.5e-05 22.2 4.2 0.00034 20.3 3.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327310339|ref|YP_004337236.1| - 0.00016 21.9 3.4 0.0016 18.7 2.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|327310339|ref|YP_004337236.1| - 0.0011 18.5 3.0 0.011 15.3 0.1 2.4 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_9 PF13187.1 gi|327310339|ref|YP_004337236.1| - 0.005 17.0 7.5 0.094 13.0 6.0 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327310339|ref|YP_004337236.1| - 0.015 16.0 3.1 0.042 14.5 2.2 1.8 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain NAGLU_N PF12971.2 gi|327310339|ref|YP_004337236.1| - 0.084 12.5 0.1 0.71 9.5 0.0 2.5 2 1 0 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain Fer4_21 PF14697.1 gi|327310339|ref|YP_004337236.1| - 0.093 12.6 4.4 0.38 10.6 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain FAD-oxidase_C PF02913.14 gi|327310340|ref|YP_004337237.1| - 5.4e-47 160.2 0.0 7.4e-47 159.7 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|327310340|ref|YP_004337237.1| - 5.4e-41 139.3 0.4 2.6e-40 137.1 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain Sugar_tr PF00083.19 gi|327310341|ref|YP_004337238.1| - 2.4e-17 62.6 27.6 1.1e-16 60.4 6.4 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|327310341|ref|YP_004337238.1| - 7.4e-17 61.0 48.3 7.4e-17 61.0 33.5 1.9 1 1 0 1 1 1 1 Major Facilitator Superfamily Ion_trans_N PF08412.5 gi|327310341|ref|YP_004337238.1| - 0.03 13.6 0.0 0.14 11.5 0.0 2.1 2 0 0 2 2 2 0 Ion transport protein N-terminal adh_short PF00106.20 gi|327310342|ref|YP_004337239.1| - 6.3e-35 120.5 0.3 1e-34 119.9 0.2 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|327310342|ref|YP_004337239.1| - 9.8e-35 120.4 0.1 1.3e-34 120.0 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|327310342|ref|YP_004337239.1| - 5.9e-14 52.1 0.1 1.3e-13 50.9 0.0 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|327310342|ref|YP_004337239.1| - 5.6e-08 32.5 1.0 1.7e-06 27.6 0.2 2.6 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|327310342|ref|YP_004337239.1| - 0.00036 20.5 0.8 0.00059 19.8 0.5 1.5 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|327310342|ref|YP_004337239.1| - 0.0019 17.9 0.3 0.0042 16.8 0.2 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3Beta_HSD PF01073.14 gi|327310342|ref|YP_004337239.1| - 0.0019 16.9 0.0 0.0037 16.0 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family THF_DHG_CYH_C PF02882.14 gi|327310342|ref|YP_004337239.1| - 0.0068 15.4 0.0 0.029 13.4 0.0 2.0 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.10 gi|327310342|ref|YP_004337239.1| - 0.021 14.4 0.0 0.044 13.4 0.0 1.6 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Shikimate_DH PF01488.15 gi|327310342|ref|YP_004337239.1| - 0.028 14.4 1.5 0.81 9.7 0.4 2.8 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase NmrA PF05368.8 gi|327310342|ref|YP_004337239.1| - 0.088 12.0 0.3 0.16 11.1 0.2 1.4 1 0 0 1 1 1 0 NmrA-like family DUF192 PF02643.10 gi|327310343|ref|YP_004337240.1| - 8.4e-18 64.0 0.0 1.1e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF732 PF05305.9 gi|327310343|ref|YP_004337240.1| - 0.071 13.1 0.2 0.11 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF732) PyrI PF01948.13 gi|327310344|ref|YP_004337241.1| - 4e-38 129.3 1.1 5.1e-38 129.0 0.7 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|327310344|ref|YP_004337241.1| - 7e-17 60.6 1.6 1.2e-16 59.8 1.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OMPdecase PF00215.19 gi|327310345|ref|YP_004337242.1| - 1.2e-15 57.5 0.7 2.9e-14 53.0 0.5 2.0 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family OTCace_N PF02729.16 gi|327310346|ref|YP_004337243.1| - 4.1e-47 159.4 0.0 5.8e-47 158.9 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|327310346|ref|YP_004337243.1| - 1.5e-34 119.1 0.0 3e-34 118.2 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF4283 PF14111.1 gi|327310346|ref|YP_004337243.1| - 0.03 13.4 0.1 0.12 11.4 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4283) DUF2250 PF10007.4 gi|327310347|ref|YP_004337244.1| - 2.6e-06 27.2 0.0 1.1e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|327310347|ref|YP_004337244.1| - 0.13 11.9 0.7 2 8.1 0.1 2.3 2 0 0 2 2 2 0 MarR family DAO PF01266.19 gi|327310349|ref|YP_004337246.1| - 1e-21 77.2 4.5 1.5e-20 73.3 3.1 2.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|327310349|ref|YP_004337246.1| - 0.00056 19.8 0.4 0.0022 17.8 0.3 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|327310349|ref|YP_004337246.1| - 0.00058 19.8 2.4 0.0019 18.1 0.7 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|327310349|ref|YP_004337246.1| - 0.0027 16.8 0.6 0.0051 15.9 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|327310349|ref|YP_004337246.1| - 0.36 10.8 2.8 19 5.2 1.7 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|327310349|ref|YP_004337246.1| - 0.69 8.6 3.4 0.35 9.6 0.9 1.5 2 0 0 2 2 2 0 FAD binding domain DUF302 PF03625.9 gi|327310350|ref|YP_004337247.1| - 0.058 12.9 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF302 AA_kinase PF00696.23 gi|327310353|ref|YP_004337250.1| - 1.1e-27 97.1 0.0 1.3e-27 96.9 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family tRNA-synt_His PF13393.1 gi|327310354|ref|YP_004337251.1| - 2.2e-68 230.6 0.8 3.7e-68 229.8 0.1 1.6 2 0 0 2 2 2 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|327310354|ref|YP_004337251.1| - 1.2e-19 70.6 0.0 2.1e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|327310354|ref|YP_004337251.1| - 3e-13 49.5 0.3 5.8e-13 48.6 0.2 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|327310354|ref|YP_004337251.1| - 6.5e-06 25.5 0.3 2.8e-05 23.4 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) CBS PF00571.23 gi|327310354|ref|YP_004337251.1| - 0.0021 17.8 0.2 0.0066 16.2 0.1 1.9 1 0 0 1 1 1 1 CBS domain ADH_zinc_N PF00107.21 gi|327310354|ref|YP_004337251.1| - 0.046 13.2 0.1 0.44 10.0 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase tRNA-synt_2 PF00152.15 gi|327310354|ref|YP_004337251.1| - 0.1 11.3 0.1 6.7 5.3 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class II (D, K and N) Saccharop_dh PF03435.13 gi|327310355|ref|YP_004337252.1| - 1.7e-43 149.1 0.0 4.5e-42 144.4 0.0 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|327310355|ref|YP_004337252.1| - 0.0017 17.8 0.1 0.0036 16.7 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.19 gi|327310355|ref|YP_004337252.1| - 0.0027 18.0 0.1 0.022 15.0 0.0 2.3 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding_2 PF13380.1 gi|327310355|ref|YP_004337252.1| - 0.005 16.9 0.0 0.047 13.8 0.0 2.4 2 0 0 2 2 2 1 CoA binding domain NAD_binding_10 PF13460.1 gi|327310355|ref|YP_004337252.1| - 0.011 15.7 0.1 0.02 14.8 0.1 1.5 1 0 0 1 1 1 0 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|327310355|ref|YP_004337252.1| - 0.015 14.7 0.4 0.047 13.0 0.2 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ELFV_dehydrog PF00208.16 gi|327310355|ref|YP_004337252.1| - 0.023 14.2 0.1 0.21 11.1 0.0 2.0 1 1 1 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.13 gi|327310355|ref|YP_004337252.1| - 0.067 13.2 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.10 gi|327310355|ref|YP_004337252.1| - 0.14 11.9 0.0 0.31 10.8 0.0 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF91 PF01939.11 gi|327310356|ref|YP_004337253.1| - 0.00022 20.4 0.1 0.00033 19.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF91 DUF4143 PF13635.1 gi|327310356|ref|YP_004337253.1| - 0.015 15.5 0.0 0.024 14.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) IF-2B PF01008.12 gi|327310357|ref|YP_004337254.1| - 2.5e-68 230.1 0.0 3e-68 229.8 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family GATase_7 PF13537.1 gi|327310357|ref|YP_004337254.1| - 0.038 13.7 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Glutamine amidotransferase domain Cdc6_C PF09079.6 gi|327310358|ref|YP_004337255.1| - 0.058 13.1 0.1 0.073 12.8 0.0 1.2 1 0 0 1 1 1 0 CDC6, C terminal Replic_Relax PF13814.1 gi|327310358|ref|YP_004337255.1| - 0.097 12.5 0.3 0.11 12.3 0.2 1.1 1 0 0 1 1 1 0 Replication-relaxation Nol1_Nop2_Fmu PF01189.12 gi|327310359|ref|YP_004337256.1| - 5.5e-19 68.6 0.0 8.5e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 NOL1/NOP2/sun family PUA PF01472.15 gi|327310359|ref|YP_004337256.1| - 8e-16 57.5 0.6 1.3e-15 56.8 0.4 1.4 1 0 0 1 1 1 1 PUA domain Methyltransf_15 PF09445.5 gi|327310359|ref|YP_004337256.1| - 0.00052 19.6 0.0 0.0008 18.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|327310359|ref|YP_004337256.1| - 0.0077 16.2 0.2 0.014 15.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310359|ref|YP_004337256.1| - 0.017 15.6 0.0 0.029 14.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF3944 PF13099.1 gi|327310359|ref|YP_004337256.1| - 0.045 13.2 0.4 2.7 7.5 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3944) DUF3368 PF11848.3 gi|327310359|ref|YP_004337256.1| - 0.08 12.5 0.5 2.1 7.9 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) Methyltransf_31 PF13847.1 gi|327310359|ref|YP_004337256.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF4428 PF14471.1 gi|327310360|ref|YP_004337257.1| - 0.0087 15.7 0.2 0.0087 15.7 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4428) PhnA_Zn_Ribbon PF08274.7 gi|327310360|ref|YP_004337257.1| - 0.015 15.0 0.1 0.015 15.0 0.1 2.2 3 1 0 3 3 3 0 PhnA Zinc-Ribbon tify PF06200.9 gi|327310360|ref|YP_004337257.1| - 0.098 11.9 0.1 0.14 11.4 0.1 1.2 1 0 0 1 1 1 0 tify domain LIM PF00412.17 gi|327310360|ref|YP_004337257.1| - 0.18 11.8 0.3 0.18 11.8 0.2 2.2 1 1 0 1 1 1 0 LIM domain zf-H2C2_2 PF13465.1 gi|327310360|ref|YP_004337257.1| - 3.4 8.1 7.5 1.8 8.9 0.1 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zf-UDP PF14569.1 gi|327310360|ref|YP_004337257.1| - 4.2 7.1 8.2 8 6.2 5.7 1.5 1 1 0 1 1 1 0 Zinc-binding RING-finger Tnp_zf-ribbon_2 PF13842.1 gi|327310360|ref|YP_004337257.1| - 5.9 7.3 11.6 14 6.2 2.1 2.8 2 2 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-RING_5 PF14634.1 gi|327310360|ref|YP_004337257.1| - 6.1 6.6 8.2 1.7e+02 2.0 5.7 2.8 1 1 0 1 1 1 0 zinc-RING finger domain Zn_Tnp_IS1595 PF12760.2 gi|327310360|ref|YP_004337257.1| - 9.2 6.1 7.5 11 5.9 0.6 2.5 2 1 0 2 2 2 0 Transposase zinc-ribbon domain AMMECR1 PF01871.12 gi|327310361|ref|YP_004337258.1| - 1.5e-54 183.6 0.0 1.8e-54 183.4 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 MMR_HSR1 PF01926.18 gi|327310362|ref|YP_004337259.1| - 4e-18 65.4 0.1 7.6e-15 54.8 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|327310362|ref|YP_004337259.1| - 7.3e-10 38.3 0.0 4.8e-05 22.6 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|327310362|ref|YP_004337259.1| - 1.2e-06 28.5 0.2 0.004 17.0 0.0 2.9 3 0 0 3 3 3 2 Dynamin family GTP_EFTU PF00009.22 gi|327310362|ref|YP_004337259.1| - 6.9e-06 25.6 0.2 0.0011 18.4 0.0 3.3 2 2 0 3 3 3 1 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|327310362|ref|YP_004337259.1| - 0.00011 21.4 0.0 0.00024 20.3 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 PAS_8 PF13188.1 gi|327310362|ref|YP_004337259.1| - 0.00076 19.2 0.0 0.002 17.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain Miro PF08477.8 gi|327310362|ref|YP_004337259.1| - 0.016 15.7 0.0 0.062 13.8 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein AAA_17 PF13207.1 gi|327310362|ref|YP_004337259.1| - 0.026 15.3 0.0 0.067 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|327310362|ref|YP_004337259.1| - 0.03 14.6 0.0 0.071 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|327310362|ref|YP_004337259.1| - 0.032 13.3 0.0 0.083 11.9 0.0 1.7 2 0 0 2 2 2 0 AIG1 family Arf PF00025.16 gi|327310362|ref|YP_004337259.1| - 0.045 12.9 0.0 0.079 12.1 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family MobB PF03205.9 gi|327310362|ref|YP_004337259.1| - 0.1 12.3 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_D PF01813.12 gi|327310363|ref|YP_004337260.1| - 5.7e-42 143.4 8.7 6.6e-42 143.2 6.0 1.0 1 0 0 1 1 1 1 ATP synthase subunit D MutS_III PF05192.13 gi|327310363|ref|YP_004337260.1| - 0.058 13.1 0.6 0.074 12.8 0.4 1.2 1 0 0 1 1 1 0 MutS domain III Hemerythrin PF01814.18 gi|327310363|ref|YP_004337260.1| - 0.12 12.5 1.6 0.83 9.8 0.9 2.1 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain EntA_Immun PF08951.5 gi|327310364|ref|YP_004337261.1| - 0.018 15.1 1.9 0.022 14.8 1.3 1.1 1 0 0 1 1 1 0 Enterocin A Immunity Apolipoprotein PF01442.13 gi|327310364|ref|YP_004337261.1| - 0.045 13.2 1.2 0.048 13.1 0.8 1.0 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.7 gi|327310364|ref|YP_004337261.1| - 0.047 13.5 0.2 0.047 13.5 0.1 1.0 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Trans_reg_C PF00486.23 gi|327310364|ref|YP_004337261.1| - 0.052 13.4 0.2 0.054 13.4 0.2 1.2 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal Peptidase_M41 PF01434.13 gi|327310364|ref|YP_004337261.1| - 0.056 12.9 1.2 0.059 12.8 0.8 1.0 1 0 0 1 1 1 0 Peptidase family M41 Med9 PF07544.8 gi|327310364|ref|YP_004337261.1| - 0.059 13.1 3.1 0.068 12.9 2.2 1.2 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Phage_Mu_Gam PF07352.7 gi|327310364|ref|YP_004337261.1| - 0.12 11.9 1.7 0.11 11.9 1.2 1.0 1 0 0 1 1 1 0 Bacteriophage Mu Gam like protein Sipho_Gp157 PF05565.6 gi|327310364|ref|YP_004337261.1| - 0.12 11.9 2.9 0.12 11.9 2.0 1.1 1 0 0 1 1 1 0 Siphovirus Gp157 DUF892 PF05974.7 gi|327310364|ref|YP_004337261.1| - 0.12 12.2 1.1 0.13 12.1 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF892) DUF2573 PF10835.3 gi|327310364|ref|YP_004337261.1| - 0.13 12.3 0.7 0.13 12.2 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2573) Laminin_II PF06009.7 gi|327310364|ref|YP_004337261.1| - 0.21 11.3 2.0 0.25 11.1 1.4 1.0 1 0 0 1 1 1 0 Laminin Domain II DNA_topoisoIV PF00521.15 gi|327310364|ref|YP_004337261.1| - 0.25 10.1 2.3 0.24 10.2 1.6 1.0 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A FlxA PF14282.1 gi|327310364|ref|YP_004337261.1| - 0.46 10.4 3.1 0.5 10.3 2.1 1.1 1 0 0 1 1 1 0 FlxA-like protein Sugarporin_N PF11471.3 gi|327310364|ref|YP_004337261.1| - 0.86 9.3 4.0 0.31 10.6 0.8 1.8 2 1 0 2 2 2 0 Maltoporin periplasmic N-terminal extension Med21 PF11221.3 gi|327310364|ref|YP_004337261.1| - 1.2 9.0 3.9 1.4 8.8 2.7 1.2 1 0 0 1 1 1 0 Subunit 21 of Mediator complex M PF02370.11 gi|327310364|ref|YP_004337261.1| - 1.5 9.4 5.8 5.3 7.7 1.5 2.3 2 0 0 2 2 2 0 M protein repeat MerR-DNA-bind PF09278.6 gi|327310364|ref|YP_004337261.1| - 1.5 9.2 4.9 2.8 8.4 3.1 1.6 1 1 1 2 2 2 0 MerR, DNA binding Ribosomal_L29 PF00831.18 gi|327310364|ref|YP_004337261.1| - 1.5 8.5 5.6 1.5 8.5 3.0 1.6 1 1 1 2 2 2 0 Ribosomal L29 protein ATP-synt_C PF00137.16 gi|327310365|ref|YP_004337262.1| - 1.8e-22 78.9 13.3 1.8e-22 78.9 9.2 1.4 2 0 0 2 2 2 1 ATP synthase subunit C ATG22 PF11700.3 gi|327310365|ref|YP_004337262.1| - 0.073 11.5 2.4 0.087 11.2 1.7 1.2 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like Ecm33 PF12454.3 gi|327310365|ref|YP_004337262.1| - 0.1 12.4 0.2 0.1 12.4 0.1 2.0 2 0 0 2 2 2 0 GPI-anchored cell wall organization protein PMT_2 PF13231.1 gi|327310365|ref|YP_004337262.1| - 0.23 11.3 5.5 0.32 10.8 3.8 1.2 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase FtsX PF02687.16 gi|327310365|ref|YP_004337262.1| - 0.34 10.6 8.5 0.24 11.1 5.1 1.4 1 1 0 1 1 1 0 FtsX-like permease family OMP_b-brl PF13505.1 gi|327310365|ref|YP_004337262.1| - 1.7 8.5 5.4 3.1 7.6 3.6 1.5 1 1 0 1 1 1 0 Outer membrane protein beta-barrel domain DUF4407 PF14362.1 gi|327310365|ref|YP_004337262.1| - 2.1 7.2 5.4 2.6 6.9 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RseC_MucC PF04246.7 gi|327310365|ref|YP_004337262.1| - 4.1 6.9 8.6 1.7 8.1 3.1 1.9 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC vATP-synt_AC39 PF01992.11 gi|327310366|ref|YP_004337263.1| - 1.1e-12 47.7 0.1 2e-08 33.7 0.1 2.0 1 1 1 2 2 2 2 ATP synthase (C/AC39) subunit Apc5 PF12862.2 gi|327310366|ref|YP_004337263.1| - 0.041 13.7 0.1 2.8 7.8 0.0 2.4 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 5 ATP-synt_B PF00430.13 gi|327310367|ref|YP_004337264.1| - 0.00019 21.2 16.8 0.0073 16.1 4.7 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DivIVA PF05103.8 gi|327310367|ref|YP_004337264.1| - 0.0069 16.4 13.5 0.0092 16.0 9.3 1.1 1 0 0 1 1 1 1 DivIVA protein DUF4456 PF14644.1 gi|327310367|ref|YP_004337264.1| - 0.0089 15.2 5.8 0.011 14.9 4.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4456) DUF3584 PF12128.3 gi|327310367|ref|YP_004337264.1| - 0.012 12.9 10.2 0.013 12.8 7.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4615 PF15393.1 gi|327310367|ref|YP_004337264.1| - 0.015 15.5 5.9 0.018 15.2 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4615) DUF2564 PF10819.3 gi|327310367|ref|YP_004337264.1| - 0.015 15.3 3.7 0.35 11.0 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2564) Prominin PF05478.6 gi|327310367|ref|YP_004337264.1| - 0.019 12.5 4.7 0.02 12.4 3.3 1.0 1 0 0 1 1 1 0 Prominin Borrelia_lipo_1 PF05714.6 gi|327310367|ref|YP_004337264.1| - 0.027 13.5 8.6 0.075 12.1 6.0 1.7 1 1 0 1 1 1 0 Borrelia burgdorferi virulent strain associated lipoprotein AHSP PF09236.5 gi|327310367|ref|YP_004337264.1| - 0.031 14.4 4.0 0.78 9.9 0.5 2.1 1 1 1 2 2 2 0 Alpha-haemoglobin stabilising protein DASH_Duo1 PF08651.5 gi|327310367|ref|YP_004337264.1| - 0.032 13.7 3.0 0.11 12.0 0.7 2.2 1 1 1 2 2 2 0 DASH complex subunit Duo1 DUF4102 PF13356.1 gi|327310367|ref|YP_004337264.1| - 0.042 13.7 2.4 0.46 10.4 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4102) DUF2130 PF09903.4 gi|327310367|ref|YP_004337264.1| - 0.043 12.5 11.9 0.13 10.9 8.1 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) Scm3 PF10384.4 gi|327310367|ref|YP_004337264.1| - 0.045 13.2 0.5 0.045 13.2 0.3 2.0 2 0 0 2 2 2 0 Centromere protein Scm3 TENA_THI-4 PF03070.11 gi|327310367|ref|YP_004337264.1| - 0.055 13.2 2.0 0.063 13.0 0.7 1.4 1 1 0 1 1 1 0 TENA/THI-4/PQQC family V-ATPase_G PF03179.10 gi|327310367|ref|YP_004337264.1| - 0.091 13.0 16.7 1.1 9.6 5.7 2.6 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit PTPA PF03095.10 gi|327310367|ref|YP_004337264.1| - 0.092 11.9 1.0 0.1 11.7 0.7 1.1 1 0 0 1 1 1 0 Phosphotyrosyl phosphate activator (PTPA) protein DUF3510 PF12022.3 gi|327310367|ref|YP_004337264.1| - 0.12 12.5 4.5 0.52 10.4 2.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3510) DUF445 PF04286.7 gi|327310367|ref|YP_004337264.1| - 0.12 11.8 6.9 0.16 11.4 4.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Helicase_C_2 PF13307.1 gi|327310367|ref|YP_004337264.1| - 0.12 12.2 2.8 1.7 8.5 0.2 2.0 1 1 1 2 2 2 0 Helicase C-terminal domain Poty_PP PF08440.5 gi|327310367|ref|YP_004337264.1| - 0.14 11.2 4.2 0.16 11.0 2.9 1.1 1 0 0 1 1 1 0 Potyviridae polyprotein HrpE PF06188.7 gi|327310367|ref|YP_004337264.1| - 0.14 11.9 8.1 0.27 10.9 5.6 1.4 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E KfrA_N PF11740.3 gi|327310367|ref|YP_004337264.1| - 0.14 12.6 7.2 0.28 11.6 5.0 1.5 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term rve_3 PF13683.1 gi|327310367|ref|YP_004337264.1| - 0.16 11.4 0.5 0.62 9.6 0.1 2.1 2 1 1 3 3 2 0 Integrase core domain Carbpep_Y_N PF05388.6 gi|327310367|ref|YP_004337264.1| - 0.18 11.9 3.5 6.5 6.9 0.6 2.2 1 1 1 2 2 2 0 Carboxypeptidase Y pro-peptide DUF4618 PF15397.1 gi|327310367|ref|YP_004337264.1| - 0.2 10.9 11.3 0.24 10.7 7.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) EcsC PF12787.2 gi|327310367|ref|YP_004337264.1| - 0.23 10.8 3.6 0.31 10.3 2.5 1.3 1 0 0 1 1 1 0 EcsC protein family DASH_Ask1 PF08655.5 gi|327310367|ref|YP_004337264.1| - 0.28 11.0 1.8 1.3 8.8 1.2 1.9 1 1 1 2 2 2 0 DASH complex subunit Ask1 DUF1444 PF07285.6 gi|327310367|ref|YP_004337264.1| - 0.28 10.4 5.1 0.42 9.8 3.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1444) Apolipoprotein PF01442.13 gi|327310367|ref|YP_004337264.1| - 0.31 10.5 8.4 0.44 10.0 5.8 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain OmpH PF03938.9 gi|327310367|ref|YP_004337264.1| - 0.33 10.8 12.8 0.39 10.6 8.9 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF2937 PF11157.3 gi|327310367|ref|YP_004337264.1| - 0.34 10.2 2.3 0.39 10.0 0.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2937) DUF4359 PF14271.1 gi|327310367|ref|YP_004337264.1| - 0.38 11.1 3.5 0.65 10.3 0.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4359) Sec23_helical PF04815.10 gi|327310367|ref|YP_004337264.1| - 0.44 10.0 2.6 1 8.8 0.2 2.1 1 1 1 2 2 2 0 Sec23/Sec24 helical domain HK97-gp10_like PF04883.7 gi|327310367|ref|YP_004337264.1| - 0.45 11.4 5.6 1.3 9.9 1.1 2.5 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component Peptidase_M41 PF01434.13 gi|327310367|ref|YP_004337264.1| - 0.46 9.9 8.6 1.8 7.9 1.1 2.0 1 1 1 2 2 2 0 Peptidase family M41 Muted PF14942.1 gi|327310367|ref|YP_004337264.1| - 0.5 10.2 9.4 0.83 9.5 6.5 1.3 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein GlutR_dimer PF00745.15 gi|327310367|ref|YP_004337264.1| - 0.56 10.1 11.3 4.8 7.1 3.2 2.4 1 1 1 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain ISG65-75 PF11727.3 gi|327310367|ref|YP_004337264.1| - 0.61 9.0 8.0 0.72 8.8 5.5 1.1 1 0 0 1 1 1 0 Invariant surface glycoprotein AF0941-like PF14591.1 gi|327310367|ref|YP_004337264.1| - 0.78 9.8 10.0 1.3 9.1 6.9 1.4 1 1 0 1 1 1 0 AF0941-like DUF4230 PF14014.1 gi|327310367|ref|YP_004337264.1| - 0.91 9.3 7.3 1.6 8.5 5.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4230) HAUS-augmin3 PF14932.1 gi|327310367|ref|YP_004337264.1| - 0.93 8.6 10.4 4.5 6.3 7.2 1.8 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 CDC37_N PF03234.9 gi|327310367|ref|YP_004337264.1| - 0.94 9.7 8.2 1.2 9.4 5.7 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding DUF4065 PF13274.1 gi|327310367|ref|YP_004337264.1| - 1.2 9.9 5.1 9.7 6.9 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4065) Exonuc_VII_L PF02601.10 gi|327310367|ref|YP_004337264.1| - 1.2 8.2 8.2 1.4 8.0 5.7 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit AAA_13 PF13166.1 gi|327310367|ref|YP_004337264.1| - 1.2 7.5 11.6 1.3 7.4 8.0 1.0 1 0 0 1 1 1 0 AAA domain Nnf1 PF03980.9 gi|327310367|ref|YP_004337264.1| - 1.2 9.1 8.9 2.2 8.2 6.2 1.6 1 1 0 1 1 1 0 Nnf1 Phasin PF05597.6 gi|327310367|ref|YP_004337264.1| - 1.3 8.8 8.2 48 3.7 5.6 2.1 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) FTCD_C PF04961.7 gi|327310367|ref|YP_004337264.1| - 1.3 8.3 4.8 2.7 7.3 3.3 1.5 1 1 0 1 1 1 0 Formiminotransferase-cyclodeaminase LsmAD PF06741.8 gi|327310367|ref|YP_004337264.1| - 1.3 9.1 7.1 6.3 6.9 0.8 2.2 2 0 0 2 2 2 0 LsmAD domain DUF334 PF03904.8 gi|327310367|ref|YP_004337264.1| - 1.6 8.0 7.6 2.1 7.6 5.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF334) DUF4449 PF14613.1 gi|327310367|ref|YP_004337264.1| - 1.6 8.6 8.5 0.59 10.0 1.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4449) RapA_C PF12137.3 gi|327310367|ref|YP_004337264.1| - 1.7 7.4 9.5 0.91 8.2 3.9 1.5 1 1 0 1 1 1 0 RNA polymerase recycling family C-terminal Phage_Mu_Gam PF07352.7 gi|327310367|ref|YP_004337264.1| - 1.7 8.1 13.2 0.24 10.9 4.3 1.9 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein DUF883 PF05957.8 gi|327310367|ref|YP_004337264.1| - 1.9 8.9 8.2 3.9 7.9 2.6 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Orbi_VP5 PF00901.12 gi|327310367|ref|YP_004337264.1| - 1.9 6.6 9.7 2.3 6.3 6.8 1.0 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP5 Occludin_ELL PF07303.8 gi|327310367|ref|YP_004337264.1| - 1.9 9.2 9.8 1.4 9.7 1.9 2.1 1 1 1 2 2 2 0 Occludin homology domain Caudo_TAP PF02413.12 gi|327310367|ref|YP_004337264.1| - 2 8.5 9.9 1.1 9.4 1.9 2.1 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein HAUS6_N PF14661.1 gi|327310367|ref|YP_004337264.1| - 2.2 7.5 7.5 2.9 7.1 5.2 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Fib_alpha PF08702.5 gi|327310367|ref|YP_004337264.1| - 2.3 8.3 8.9 3.2 7.8 6.2 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family ALMT PF11744.3 gi|327310367|ref|YP_004337264.1| - 2.3 6.7 5.1 2.6 6.6 3.5 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter BEX PF04538.7 gi|327310367|ref|YP_004337264.1| - 2.3 8.4 6.3 1.9 8.7 0.3 2.2 1 1 1 2 2 2 0 Brain expressed X-linked like family AbiH PF14253.1 gi|327310367|ref|YP_004337264.1| - 2.5 7.6 6.9 3.2 7.2 4.8 1.1 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH DUF1269 PF06897.7 gi|327310367|ref|YP_004337264.1| - 2.6 8.1 4.3 13 5.8 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) DUF4473 PF14747.1 gi|327310367|ref|YP_004337264.1| - 2.6 8.3 7.6 5.2 7.3 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4473) YtxH PF12732.2 gi|327310367|ref|YP_004337264.1| - 3 8.2 9.6 1.8e+02 2.5 6.6 2.2 1 1 0 1 1 1 0 YtxH-like protein COG2 PF06148.6 gi|327310367|ref|YP_004337264.1| - 3.1 7.6 8.4 1.2 9.0 1.5 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 MIF4G_like_2 PF09090.6 gi|327310367|ref|YP_004337264.1| - 3.2 6.9 8.1 5 6.2 5.6 1.4 1 1 0 1 1 1 0 MIF4G like Oxysterol_BP PF01237.13 gi|327310367|ref|YP_004337264.1| - 3.3 6.1 6.4 3.8 5.9 4.4 1.1 1 0 0 1 1 1 0 Oxysterol-binding protein DUF2951 PF11166.3 gi|327310367|ref|YP_004337264.1| - 3.6 7.5 11.2 2.7 7.9 4.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2951) CorA PF01544.13 gi|327310367|ref|YP_004337264.1| - 3.6 6.5 7.6 5 6.0 5.2 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein NAP PF00956.13 gi|327310367|ref|YP_004337264.1| - 5 6.1 9.9 7.9 5.5 0.9 2.0 1 1 1 2 2 2 0 Nucleosome assembly protein (NAP) TMPIT PF07851.8 gi|327310367|ref|YP_004337264.1| - 5.1 6.0 6.9 5.5 5.9 4.8 1.1 1 0 0 1 1 1 0 TMPIT-like protein Mitofilin PF09731.4 gi|327310367|ref|YP_004337264.1| - 5.4 5.5 15.0 10 4.6 10.4 1.4 1 1 0 1 1 1 0 Mitochondrial inner membrane protein DUF2229 PF09989.4 gi|327310367|ref|YP_004337264.1| - 5.6 6.3 7.9 10 5.4 0.2 1.9 1 1 1 2 2 2 0 CoA enzyme activase uncharacterised domain (DUF2229) YgaB PF14182.1 gi|327310367|ref|YP_004337264.1| - 6 7.1 11.3 0.81 9.9 1.6 2.2 1 1 1 2 2 2 0 YgaB-like protein PP2C_C PF07830.8 gi|327310367|ref|YP_004337264.1| - 7.5 6.7 6.6 17 5.5 0.4 2.4 1 1 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain GvpL_GvpF PF06386.6 gi|327310367|ref|YP_004337264.1| - 7.9 5.9 8.7 50 3.3 6.1 1.9 1 1 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF LUC7 PF03194.10 gi|327310367|ref|YP_004337264.1| - 8 5.9 10.6 9.7 5.6 7.3 1.1 1 0 0 1 1 1 0 LUC7 N_terminus DUF2203 PF09969.4 gi|327310367|ref|YP_004337264.1| - 8 6.7 8.6 66 3.7 6.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DNA_topoisoIV PF00521.15 gi|327310367|ref|YP_004337264.1| - 8.2 5.1 9.3 8.9 5.0 6.5 1.1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A DUF607 PF04678.8 gi|327310367|ref|YP_004337264.1| - 8.3 6.2 7.5 24 4.7 5.2 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF607 FKBP_N PF01346.13 gi|327310367|ref|YP_004337264.1| - 8.4 6.4 10.5 1.1 9.2 1.3 2.0 1 1 1 2 2 2 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Band_7 PF01145.20 gi|327310368|ref|YP_004337265.1| - 3.9e-34 118.0 3.5 5.1e-34 117.7 2.4 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|327310368|ref|YP_004337265.1| - 0.0023 17.4 0.0 0.0057 16.2 0.0 1.6 2 1 0 2 2 2 1 SPFH domain-Band 7 family Glyco_hydro_80 PF13647.1 gi|327310368|ref|YP_004337265.1| - 0.089 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A NfeD PF01957.13 gi|327310369|ref|YP_004337266.1| - 3e-20 72.8 2.7 3e-20 72.8 1.8 2.5 1 1 1 2 2 2 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.11 gi|327310369|ref|YP_004337266.1| - 0.0001 21.2 0.1 0.00017 20.4 0.1 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|327310369|ref|YP_004337266.1| - 0.0022 17.6 0.1 0.0039 16.8 0.1 1.4 1 0 0 1 1 1 1 Clp protease ECH PF00378.15 gi|327310369|ref|YP_004337266.1| - 1.7 7.6 3.6 1.2 8.2 0.0 2.3 2 1 1 3 3 3 0 Enoyl-CoA hydratase/isomerase family DUF3098 PF11297.3 gi|327310370|ref|YP_004337267.1| - 1.2 8.8 3.6 2.1 8.1 2.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) CcmD PF04995.9 gi|327310370|ref|YP_004337267.1| - 5 6.9 11.9 0.64 9.8 1.0 2.5 2 1 0 2 2 2 0 Heme exporter protein D (CcmD) DUF4010 PF13194.1 gi|327310371|ref|YP_004337268.1| - 0.096 11.9 0.2 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) RskA PF10099.4 gi|327310371|ref|YP_004337268.1| - 0.13 12.0 0.1 0.17 11.5 0.1 1.1 1 0 0 1 1 1 0 Anti-sigma-K factor rskA GspL_C PF12693.2 gi|327310371|ref|YP_004337268.1| - 0.21 11.3 2.2 0.43 10.3 1.5 1.5 1 1 0 1 1 1 0 GspL periplasmic domain NERD PF08378.6 gi|327310373|ref|YP_004337270.1| - 5.9e-08 32.9 0.0 9.2e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.7 gi|327310373|ref|YP_004337270.1| - 4.1e-06 26.5 0.0 5.7e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease FAD_binding_2 PF00890.19 gi|327310374|ref|YP_004337271.1| - 1.4e-07 30.7 8.4 3.2e-06 26.2 1.4 2.6 3 0 0 3 3 3 2 FAD binding domain Pyr_redox PF00070.22 gi|327310374|ref|YP_004337271.1| - 3e-07 30.7 4.8 0.0009 19.6 0.1 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|327310374|ref|YP_004337271.1| - 3.6e-07 30.1 1.6 1.1e-05 25.3 0.4 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|327310374|ref|YP_004337271.1| - 7.7e-07 29.1 7.4 0.00012 21.9 3.5 3.8 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|327310374|ref|YP_004337271.1| - 3.4e-06 26.3 3.2 0.0012 17.9 0.4 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.19 gi|327310374|ref|YP_004337271.1| - 6.4e-06 25.3 6.9 7.6e-05 21.7 0.9 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|327310374|ref|YP_004337271.1| - 3.6e-05 22.9 0.3 0.00068 18.7 0.1 2.4 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|327310374|ref|YP_004337271.1| - 3.8e-05 22.9 0.3 0.00029 19.9 0.3 2.1 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|327310374|ref|YP_004337271.1| - 0.0011 17.9 1.4 0.011 14.5 0.5 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|327310374|ref|YP_004337271.1| - 0.0015 17.5 1.7 0.28 10.0 0.3 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.9 gi|327310374|ref|YP_004337271.1| - 0.002 16.6 0.6 0.027 12.9 0.3 2.3 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_7 PF13241.1 gi|327310374|ref|YP_004337271.1| - 0.0029 17.8 1.0 2 8.6 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|327310374|ref|YP_004337271.1| - 0.0036 17.3 1.4 1 9.3 0.6 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|327310374|ref|YP_004337271.1| - 2.6 7.0 4.1 24 3.8 0.1 2.4 2 1 0 2 2 2 0 Flavin containing amine oxidoreductase HAD_2 PF13419.1 gi|327310375|ref|YP_004337272.1| - 2.2e-17 63.8 0.1 2.8e-17 63.5 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|327310375|ref|YP_004337272.1| - 2.7e-08 33.4 0.0 5.9e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|327310375|ref|YP_004337272.1| - 1.2e-06 29.1 0.0 7.3e-06 26.5 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|327310375|ref|YP_004337272.1| - 8.7e-05 22.7 0.2 0.00011 22.3 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase CENP-N PF05238.8 gi|327310375|ref|YP_004337272.1| - 0.00091 18.3 0.0 0.0012 18.0 0.0 1.1 1 0 0 1 1 1 1 Kinetochore protein CHL4 like PNK3P PF08645.6 gi|327310375|ref|YP_004337272.1| - 0.0085 15.5 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 Polynucleotide kinase 3 phosphatase MMPL PF03176.10 gi|327310376|ref|YP_004337273.1| - 7.9e-66 222.0 35.3 4.4e-36 124.2 10.7 2.5 3 0 0 3 3 3 2 MMPL family Cortexin PF11057.3 gi|327310376|ref|YP_004337273.1| - 0.29 10.7 4.6 0.43 10.2 0.0 3.0 3 0 0 3 3 3 0 Cortexin of kidney MacB_PCD PF12704.2 gi|327310377|ref|YP_004337274.1| - 6.4e-20 71.7 0.6 6.4e-20 71.7 0.4 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|327310377|ref|YP_004337274.1| - 2e-17 63.0 13.4 2e-17 63.0 9.3 2.5 2 0 0 2 2 2 1 FtsX-like permease family Dopey_N PF04118.9 gi|327310377|ref|YP_004337274.1| - 0.0025 16.6 0.0 0.0038 16.0 0.0 1.3 1 0 0 1 1 1 1 Dopey, N-terminal MmoB_DmpM PF02406.12 gi|327310377|ref|YP_004337274.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 MmoB/DmpM family ABC_tran PF00005.22 gi|327310378|ref|YP_004337275.1| - 1.4e-30 106.3 0.0 2.1e-30 105.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310378|ref|YP_004337275.1| - 1.2e-16 61.5 0.1 2.5e-10 40.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|327310378|ref|YP_004337275.1| - 1.3e-05 24.7 0.1 0.02 14.3 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|327310378|ref|YP_004337275.1| - 3.2e-05 23.2 0.2 0.029 13.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|327310378|ref|YP_004337275.1| - 0.00012 21.4 0.2 0.00029 20.3 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|327310378|ref|YP_004337275.1| - 0.00024 20.3 0.1 0.00038 19.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|327310378|ref|YP_004337275.1| - 0.00035 20.5 0.8 0.00094 19.2 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.14 gi|327310378|ref|YP_004337275.1| - 0.00042 19.8 0.0 0.00064 19.2 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|327310378|ref|YP_004337275.1| - 0.00051 20.1 0.7 0.023 14.8 0.1 2.3 1 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|327310378|ref|YP_004337275.1| - 0.0017 18.6 0.0 0.0026 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|327310378|ref|YP_004337275.1| - 0.0042 16.9 0.0 0.0091 15.8 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|327310378|ref|YP_004337275.1| - 0.0045 16.7 0.5 0.018 14.7 0.1 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|327310378|ref|YP_004337275.1| - 0.0072 17.1 0.1 0.014 16.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|327310378|ref|YP_004337275.1| - 0.0079 16.4 0.0 0.064 13.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|327310378|ref|YP_004337275.1| - 0.0092 15.8 0.0 0.012 15.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|327310378|ref|YP_004337275.1| - 0.018 14.7 0.1 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|327310378|ref|YP_004337275.1| - 0.026 14.5 0.0 0.15 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain YbjN PF10722.4 gi|327310378|ref|YP_004337275.1| - 0.043 13.8 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative bacterial sensory transduction regulator AAA_30 PF13604.1 gi|327310378|ref|YP_004337275.1| - 0.047 13.2 0.1 0.43 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|327310378|ref|YP_004337275.1| - 0.069 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_25 PF13481.1 gi|327310378|ref|YP_004337275.1| - 0.074 12.4 0.8 0.31 10.3 0.6 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|327310378|ref|YP_004337275.1| - 0.09 11.8 0.0 10 5.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|327310378|ref|YP_004337275.1| - 0.1 12.7 0.2 0.63 10.2 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|327310378|ref|YP_004337275.1| - 0.11 11.4 0.4 0.2 10.5 0.3 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_ATPase PF09818.4 gi|327310378|ref|YP_004337275.1| - 0.13 10.8 2.1 4.8 5.6 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_13 PF13166.1 gi|327310378|ref|YP_004337275.1| - 0.21 9.9 0.0 1.6 7.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain Reo_sigmaC PF04582.7 gi|327310379|ref|YP_004337276.1| - 0.00028 20.1 22.6 0.009 15.2 4.2 3.3 1 1 2 3 3 3 3 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|327310379|ref|YP_004337276.1| - 0.0061 15.2 1.8 0.013 14.2 1.3 1.5 1 0 0 1 1 1 1 Spc7 kinetochore protein MCPsignal PF00015.16 gi|327310379|ref|YP_004337276.1| - 0.79 9.2 10.9 9.5 5.6 1.3 3.6 1 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|327310379|ref|YP_004337276.1| - 1 9.1 8.8 0.31 10.7 1.3 3.0 1 1 2 3 3 3 0 Laminin Domain II PhnA_Zn_Ribbon PF08274.7 gi|327310381|ref|YP_004337278.1| - 0.021 14.6 1.2 4.8 7.0 0.0 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-CSL PF05207.8 gi|327310381|ref|YP_004337278.1| - 0.054 12.9 0.2 0.13 11.8 0.2 1.6 1 1 0 1 1 1 0 CSL zinc finger zf-TFIIB PF13453.1 gi|327310381|ref|YP_004337278.1| - 0.1 11.7 0.7 0.28 10.4 0.5 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|327310381|ref|YP_004337278.1| - 0.12 12.2 0.2 3.2 7.6 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327310381|ref|YP_004337278.1| - 2 7.7 4.2 14 5.0 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DHHA1 PF02272.14 gi|327310382|ref|YP_004337279.1| - 1.6e-06 27.7 2.4 3.1e-06 26.7 1.7 1.4 1 0 0 1 1 1 1 DHHA1 domain CHAD PF05235.9 gi|327310383|ref|YP_004337280.1| - 0.049 13.2 0.0 0.049 13.2 0.0 1.0 1 0 0 1 1 1 0 CHAD domain Myosin_N PF02736.14 gi|327310383|ref|YP_004337280.1| - 0.17 11.5 0.5 0.27 10.9 0.4 1.4 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain Prefoldin_2 PF01920.15 gi|327310384|ref|YP_004337281.1| - 3.4e-24 84.6 13.4 3.8e-24 84.4 9.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF4510 PF14971.1 gi|327310384|ref|YP_004337281.1| - 0.012 15.8 0.7 0.012 15.8 0.5 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4510) Cor1 PF04803.7 gi|327310384|ref|YP_004337281.1| - 0.017 14.8 10.6 0.023 14.4 7.4 1.2 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region DUF848 PF05852.6 gi|327310384|ref|YP_004337281.1| - 0.031 14.1 7.5 0.075 12.8 5.2 1.6 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) TPR_MLP1_2 PF07926.7 gi|327310384|ref|YP_004337281.1| - 0.052 13.3 11.1 0.4 10.4 7.4 2.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein HAUS6_N PF14661.1 gi|327310384|ref|YP_004337281.1| - 0.067 12.5 4.3 0.084 12.2 3.0 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus EzrA PF06160.7 gi|327310384|ref|YP_004337281.1| - 0.076 11.1 7.6 0.094 10.8 5.3 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF3138 PF11336.3 gi|327310384|ref|YP_004337281.1| - 0.089 10.9 0.1 0.11 10.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) DUF2458 PF10454.4 gi|327310384|ref|YP_004337281.1| - 0.13 12.1 6.5 0.18 11.6 4.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) Gon7 PF08738.5 gi|327310384|ref|YP_004337281.1| - 0.13 12.2 3.0 0.084 12.8 1.0 1.6 1 1 0 1 1 1 0 Gon7 family Utp12 PF04003.7 gi|327310384|ref|YP_004337281.1| - 0.15 12.0 1.6 0.87 9.5 0.1 2.1 2 0 0 2 2 2 0 Dip2/Utp12 Family SbcD_C PF12320.3 gi|327310384|ref|YP_004337281.1| - 0.2 11.6 4.4 0.28 11.2 2.6 1.6 1 1 1 2 2 2 0 Type 5 capsule protein repressor C-terminal domain Prominin PF05478.6 gi|327310384|ref|YP_004337281.1| - 0.25 8.8 2.8 0.31 8.5 2.0 1.1 1 0 0 1 1 1 0 Prominin DUF948 PF06103.6 gi|327310384|ref|YP_004337281.1| - 0.26 11.1 2.3 0.45 10.4 0.6 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Toxin_trans PF07952.7 gi|327310384|ref|YP_004337281.1| - 0.27 10.0 1.5 0.33 9.7 1.1 1.1 1 0 0 1 1 1 0 Clostridium neurotoxin, Translocation domain DUF3584 PF12128.3 gi|327310384|ref|YP_004337281.1| - 0.28 8.4 8.6 0.33 8.2 6.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DivIC PF04977.10 gi|327310384|ref|YP_004337281.1| - 0.29 10.6 11.2 0.15 11.5 1.1 2.3 2 0 0 2 2 2 0 Septum formation initiator Enkurin PF13864.1 gi|327310384|ref|YP_004337281.1| - 0.75 10.0 9.9 0.48 10.6 0.4 2.5 1 1 1 2 2 2 0 Calmodulin-binding YPEB PF14620.1 gi|327310384|ref|YP_004337281.1| - 1.1 8.1 5.3 0.32 9.9 1.5 1.5 1 1 0 1 1 1 0 YpeB sporulation Tropomyosin_1 PF12718.2 gi|327310384|ref|YP_004337281.1| - 1.2 8.9 13.2 1.2 8.9 2.6 2.1 1 1 1 2 2 2 0 Tropomyosin like TMCO5 PF14992.1 gi|327310384|ref|YP_004337281.1| - 1.3 8.1 8.8 1.6 7.7 6.1 1.2 1 0 0 1 1 1 0 TMCO5 family Fzo_mitofusin PF04799.8 gi|327310384|ref|YP_004337281.1| - 1.5 8.1 5.4 1.9 7.8 0.6 2.1 1 1 1 2 2 2 0 fzo-like conserved region GAS PF13851.1 gi|327310384|ref|YP_004337281.1| - 1.5 7.9 12.6 6.2 5.9 8.7 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF1640 PF07798.6 gi|327310384|ref|YP_004337281.1| - 1.5 8.8 8.6 4.7 7.2 6.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Snf7 PF03357.16 gi|327310384|ref|YP_004337281.1| - 1.6 8.1 12.2 0.49 9.7 2.6 2.1 1 1 0 2 2 2 0 Snf7 DUF3086 PF11285.3 gi|327310384|ref|YP_004337281.1| - 1.8 7.2 9.1 0.17 10.6 1.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3086) Prefoldin PF02996.12 gi|327310384|ref|YP_004337281.1| - 2 8.1 8.9 0.87 9.2 1.2 2.2 1 1 1 2 2 2 0 Prefoldin subunit Fib_alpha PF08702.5 gi|327310384|ref|YP_004337281.1| - 3.5 7.7 5.9 4.7 7.3 4.1 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Spc7 PF08317.6 gi|327310384|ref|YP_004337281.1| - 3.5 6.1 10.1 4.8 5.7 7.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Syntaxin PF00804.20 gi|327310384|ref|YP_004337281.1| - 4.3 7.5 7.5 54 4.0 5.2 2.3 1 1 0 1 1 1 0 Syntaxin Macoilin PF09726.4 gi|327310384|ref|YP_004337281.1| - 4.6 5.3 9.1 5.4 5.1 6.3 1.1 1 0 0 1 1 1 0 Transmembrane protein Atg14 PF10186.4 gi|327310384|ref|YP_004337281.1| - 8.7 5.1 8.6 13 4.6 6.0 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Pcc1 PF09341.5 gi|327310385|ref|YP_004337282.1| - 0.003 17.5 0.0 0.0035 17.3 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.13 gi|327310386|ref|YP_004337283.1| - 1.6e-11 44.1 0.0 2e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Brix domain Pyridox_ox_2 PF12900.2 gi|327310386|ref|YP_004337283.1| - 0.068 12.9 0.0 1.8 8.3 0.0 2.3 1 1 1 2 2 2 0 Pyridoxamine 5'-phosphate oxidase Ribosomal_L37ae PF01780.14 gi|327310387|ref|YP_004337284.1| - 2.2e-30 104.3 0.4 2.5e-30 104.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family UPF0547 PF10571.4 gi|327310387|ref|YP_004337284.1| - 4e-05 23.2 0.6 8.7e-05 22.1 0.4 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|327310387|ref|YP_004337284.1| - 0.00097 18.9 0.9 0.00097 18.9 0.6 1.6 2 0 0 2 2 1 1 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|327310387|ref|YP_004337284.1| - 0.0016 17.7 3.3 0.21 10.9 0.1 2.3 2 0 0 2 2 2 2 Putative treble-clef, zinc-finger, Zn-binding OrfB_Zn_ribbon PF07282.6 gi|327310387|ref|YP_004337284.1| - 0.003 17.1 0.9 0.0047 16.5 0.2 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|327310387|ref|YP_004337284.1| - 0.0048 17.1 1.0 0.73 10.2 0.1 2.4 2 0 0 2 2 2 1 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|327310387|ref|YP_004337284.1| - 0.012 15.8 0.7 0.14 12.5 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger IBR PF01485.16 gi|327310387|ref|YP_004337284.1| - 0.027 14.3 0.1 0.041 13.7 0.1 1.2 1 0 0 1 1 1 0 IBR domain zinc_ribbon_5 PF13719.1 gi|327310387|ref|YP_004337284.1| - 0.033 13.7 2.0 2.1 8.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|327310387|ref|YP_004337284.1| - 0.043 13.7 1.2 3.3 7.7 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|327310387|ref|YP_004337284.1| - 0.047 13.1 0.4 0.68 9.4 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|327310387|ref|YP_004337284.1| - 0.05 12.8 2.8 2.8 7.2 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|327310387|ref|YP_004337284.1| - 0.11 12.1 3.2 3.3 7.4 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF164 PF02591.10 gi|327310387|ref|YP_004337284.1| - 0.13 12.0 1.9 3 7.7 0.2 2.4 1 1 1 2 2 2 0 Putative zinc ribbon domain Ogr_Delta PF04606.7 gi|327310387|ref|YP_004337284.1| - 0.14 11.8 0.8 8.3 6.1 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RanBP PF00641.13 gi|327310387|ref|YP_004337284.1| - 0.14 11.2 0.3 0.14 11.2 0.2 1.6 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-ISL3 PF14690.1 gi|327310387|ref|YP_004337284.1| - 0.17 11.9 2.6 13 5.8 0.1 2.6 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|327310387|ref|YP_004337284.1| - 0.19 11.5 1.0 0.6 9.9 0.7 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-C4_Topoisom PF01396.14 gi|327310387|ref|YP_004337284.1| - 0.25 10.8 5.2 1.5 8.4 0.0 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1610 PF07754.6 gi|327310387|ref|YP_004337284.1| - 0.32 11.1 9.3 0.47 10.6 0.4 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) DUF4379 PF14311.1 gi|327310387|ref|YP_004337284.1| - 0.35 10.7 3.9 2.6 7.9 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4379) zf-RING_4 PF14570.1 gi|327310387|ref|YP_004337284.1| - 0.37 10.4 1.9 1.5 8.4 0.1 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-Sec23_Sec24 PF04810.10 gi|327310387|ref|YP_004337284.1| - 0.44 10.1 3.8 8.1 6.1 0.2 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-C2H2 PF00096.21 gi|327310387|ref|YP_004337284.1| - 0.46 10.9 3.0 2.3 8.7 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Rubredoxin PF00301.15 gi|327310387|ref|YP_004337284.1| - 0.55 10.1 3.1 3.2 7.6 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin zf-TFIIB PF13453.1 gi|327310387|ref|YP_004337284.1| - 1.6 8.0 8.9 9.9 5.4 0.5 2.9 2 1 1 3 3 3 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|327310387|ref|YP_004337284.1| - 6.8 6.3 8.9 94 2.6 6.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain RNase_PH PF01138.16 gi|327310388|ref|YP_004337285.1| - 1.7e-23 83.3 0.0 3e-23 82.5 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|327310388|ref|YP_004337285.1| - 4.2e-13 49.0 0.0 8.5e-13 48.0 0.0 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|327310389|ref|YP_004337286.1| - 7.1e-36 123.4 0.0 9.9e-36 122.9 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|327310389|ref|YP_004337286.1| - 1.6e-17 63.1 0.0 3.4e-17 62.1 0.0 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|327310390|ref|YP_004337287.1| - 3.2e-06 26.6 0.1 6.3e-06 25.7 0.1 1.6 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|327310390|ref|YP_004337287.1| - 1.9e-05 24.6 0.0 5.7e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 S1 RNA binding domain KH_3 PF13014.1 gi|327310390|ref|YP_004337287.1| - 0.009 15.6 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|327310390|ref|YP_004337287.1| - 0.034 13.7 0.8 0.12 11.9 0.6 2.0 1 1 0 1 1 1 0 KH domain Ribosomal_L14 PF00238.14 gi|327310390|ref|YP_004337287.1| - 0.036 13.8 0.1 2.6 7.8 0.0 2.6 3 0 0 3 3 3 0 Ribosomal protein L14p/L23e SBDS PF01172.13 gi|327310391|ref|YP_004337288.1| - 2.4e-27 94.5 0.1 4e-27 93.8 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|327310391|ref|YP_004337288.1| - 8.4e-25 86.8 0.4 1.3e-24 86.2 0.2 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain CdhC PF03598.10 gi|327310391|ref|YP_004337288.1| - 0.027 12.9 0.0 0.039 12.4 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit Proteasome PF00227.21 gi|327310393|ref|YP_004337290.1| - 2.9e-58 196.2 0.0 6e-58 195.2 0.0 1.5 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|327310393|ref|YP_004337290.1| - 5.6e-14 51.1 0.1 1.6e-13 49.6 0.1 1.9 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNA_binding PF01877.12 gi|327310394|ref|YP_004337291.1| - 2e-24 85.9 0.0 2.4e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 RNA binding COX5A PF02284.11 gi|327310395|ref|YP_004337292.1| - 0.049 13.5 0.0 0.049 13.5 0.0 1.1 1 0 0 1 1 1 0 Cytochrome c oxidase subunit Va DUF520 PF04461.8 gi|327310395|ref|YP_004337292.1| - 0.052 13.3 0.3 0.06 13.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF520) AAA_23 PF13476.1 gi|327310396|ref|YP_004337293.1| - 0.0031 17.8 0.1 0.0044 17.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|327310396|ref|YP_004337293.1| - 0.0062 15.7 0.0 0.093 11.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_tran PF00005.22 gi|327310396|ref|YP_004337293.1| - 0.085 13.1 0.1 7.9 6.7 0.0 2.4 2 0 0 2 2 2 0 ABC transporter AAA_21 PF13304.1 gi|327310396|ref|YP_004337293.1| - 0.11 12.4 5.0 0.33 10.8 3.4 1.8 1 1 0 1 1 1 0 AAA domain Guanylate_cyc PF00211.15 gi|327310396|ref|YP_004337293.1| - 0.14 11.4 0.0 0.25 10.6 0.0 1.4 1 0 0 1 1 1 0 Adenylate and Guanylate cyclase catalytic domain Aldolase_2 PF10120.4 gi|327310397|ref|YP_004337294.1| - 3.7e-23 81.7 0.1 6.7e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 Putative aldolase HTH_37 PF13744.1 gi|327310397|ref|YP_004337294.1| - 6.9e-05 22.5 0.0 0.00017 21.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|327310397|ref|YP_004337294.1| - 0.0059 16.2 0.1 0.072 12.7 0.0 2.3 1 1 1 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.17 gi|327310397|ref|YP_004337294.1| - 0.0061 16.3 0.1 0.48 10.2 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix HTH_24 PF13412.1 gi|327310397|ref|YP_004337294.1| - 0.019 14.3 0.0 0.047 13.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|327310397|ref|YP_004337294.1| - 0.039 13.6 0.0 0.087 12.5 0.0 1.6 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.11 gi|327310397|ref|YP_004337294.1| - 0.14 11.5 0.3 0.42 9.9 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Topo-VIb_trans PF09239.6 gi|327310398|ref|YP_004337295.1| - 3.4e-60 202.1 0.0 7.1e-60 201.1 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|327310398|ref|YP_004337295.1| - 8.5e-15 54.4 0.0 1.8e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|327310398|ref|YP_004337295.1| - 5e-12 45.6 0.0 1.2e-11 44.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|327310398|ref|YP_004337295.1| - 9.4e-06 24.4 0.1 2.4e-05 23.0 0.0 1.6 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.17 gi|327310398|ref|YP_004337295.1| - 0.068 13.6 0.0 0.26 11.7 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein S13/S18 Glyco_hydro_70 PF02324.11 gi|327310399|ref|YP_004337296.1| - 0.053 11.2 0.0 0.07 10.8 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 Potass_KdpF PF09604.5 gi|327310399|ref|YP_004337296.1| - 5.6 6.9 9.1 11 5.9 6.3 1.6 1 0 0 1 1 1 0 F subunit of K+-transporting ATPase (Potass_KdpF) CcmE PF03100.10 gi|327310400|ref|YP_004337297.1| - 0.098 12.2 0.1 0.24 10.9 0.1 1.7 1 1 0 1 1 1 0 CcmE HTH_45 PF14947.1 gi|327310401|ref|YP_004337298.1| - 1.4e-12 47.2 0.0 1.7e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|327310401|ref|YP_004337298.1| - 0.00062 19.4 0.1 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.1 gi|327310401|ref|YP_004337298.1| - 0.005 16.4 0.0 0.0064 16.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_36 PF13730.1 gi|327310401|ref|YP_004337298.1| - 0.016 15.2 0.0 0.037 14.1 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|327310401|ref|YP_004337298.1| - 0.017 15.2 0.0 0.02 15.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_24 PF13412.1 gi|327310401|ref|YP_004337298.1| - 0.11 11.8 0.7 0.19 11.1 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MutS_I PF01624.15 gi|327310401|ref|YP_004337298.1| - 0.12 12.4 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 MutS domain I GPP34 PF05719.6 gi|327310401|ref|YP_004337298.1| - 0.12 12.3 0.1 0.23 11.5 0.0 1.4 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) TP6A_N PF04406.9 gi|327310402|ref|YP_004337299.1| - 3.3e-22 77.9 0.0 6.2e-22 77.0 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|327310402|ref|YP_004337299.1| - 0.0043 16.9 0.0 0.008 16.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) DUF2220 PF09983.4 gi|327310402|ref|YP_004337299.1| - 0.072 12.2 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria C-term(DUF2220) PhoU PF01895.14 gi|327310403|ref|YP_004337300.1| - 4.3e-17 62.3 4.3 4.3e-17 62.3 3.0 2.3 2 0 0 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|327310403|ref|YP_004337300.1| - 1.7e-11 43.5 1.5 2.4e-11 43.0 0.1 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE Spc42p PF11544.3 gi|327310403|ref|YP_004337300.1| - 0.0033 17.3 0.0 0.007 16.2 0.0 1.5 1 0 0 1 1 1 1 Spindle pole body component Spc42p TOBE PF03459.12 gi|327310403|ref|YP_004337300.1| - 0.11 12.6 0.0 0.29 11.2 0.0 1.8 1 0 0 1 1 1 0 TOBE domain Methyltransf_26 PF13659.1 gi|327310404|ref|YP_004337301.1| - 2.9e-06 27.2 1.3 3.2e-05 23.9 0.8 2.1 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|327310404|ref|YP_004337301.1| - 0.0006 19.0 0.2 0.00078 18.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|327310404|ref|YP_004337301.1| - 0.0011 18.0 0.0 0.0015 17.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|327310404|ref|YP_004337301.1| - 0.0083 15.5 1.0 0.069 12.5 0.7 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|327310404|ref|YP_004337301.1| - 0.0084 16.5 0.0 0.015 15.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310404|ref|YP_004337301.1| - 0.024 15.1 0.1 0.036 14.6 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|327310404|ref|YP_004337301.1| - 0.043 13.2 0.1 0.16 11.3 0.1 1.8 1 1 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|327310404|ref|YP_004337301.1| - 0.061 13.8 0.0 0.093 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HTH_11 PF08279.7 gi|327310405|ref|YP_004337302.1| - 5.3e-05 22.7 0.3 0.00013 21.5 0.2 1.7 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|327310405|ref|YP_004337302.1| - 0.00031 20.4 0.1 0.00075 19.1 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|327310405|ref|YP_004337302.1| - 0.00067 19.4 1.4 0.00085 19.0 0.1 1.8 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|327310405|ref|YP_004337302.1| - 0.0014 18.8 0.1 0.003 17.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|327310405|ref|YP_004337302.1| - 0.0022 17.9 0.1 0.004 17.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|327310405|ref|YP_004337302.1| - 0.0066 15.9 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain AAA_assoc_C PF09821.4 gi|327310405|ref|YP_004337302.1| - 0.011 15.9 0.1 0.017 15.3 0.1 1.2 1 0 0 1 1 1 0 C-terminal AAA-associated domain HemN_C PF06969.11 gi|327310405|ref|YP_004337302.1| - 0.012 15.7 0.1 0.022 14.8 0.1 1.3 1 0 0 1 1 1 0 HemN C-terminal domain HTH_Mga PF08280.6 gi|327310405|ref|YP_004337302.1| - 0.015 15.0 0.1 0.041 13.6 0.1 1.7 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_24 PF13412.1 gi|327310405|ref|YP_004337302.1| - 0.016 14.5 0.9 0.045 13.1 0.6 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.6 gi|327310405|ref|YP_004337302.1| - 0.031 14.2 0.2 0.26 11.2 0.0 2.2 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_45 PF14947.1 gi|327310405|ref|YP_004337302.1| - 0.094 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_5 PF01022.15 gi|327310405|ref|YP_004337302.1| - 8.4 6.1 6.8 0.38 10.4 0.3 2.1 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Alba PF01918.16 gi|327310406|ref|YP_004337303.1| - 2e-10 40.0 0.5 2.7e-10 39.7 0.3 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|327310406|ref|YP_004337303.1| - 0.042 13.4 1.7 0.077 12.6 1.1 1.5 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Actin PF00022.14 gi|327310408|ref|YP_004337305.1| - 9e-09 34.2 0.0 2e-08 33.1 0.0 1.5 1 1 0 1 1 1 1 Actin DUF3391 PF11871.3 gi|327310409|ref|YP_004337306.1| - 0.045 13.9 1.2 0.26 11.4 0.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3391) Adipokin_hormo PF06377.6 gi|327310410|ref|YP_004337307.1| - 0.067 13.3 0.3 0.23 11.6 0.0 1.9 1 1 1 2 2 2 0 Adipokinetic hormone SMC_N PF02463.14 gi|327310411|ref|YP_004337308.1| - 3.9e-18 65.4 0.1 5.1e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|327310411|ref|YP_004337308.1| - 2.1e-09 37.7 14.9 3.4e-05 23.9 2.8 2.7 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|327310411|ref|YP_004337308.1| - 1.5e-08 35.2 53.6 1.4 9.2 37.1 4.9 1 1 0 1 1 1 1 AAA domain GAS PF13851.1 gi|327310411|ref|YP_004337308.1| - 1.1e-06 28.0 47.4 0.0028 16.8 3.2 4.8 3 1 1 4 4 4 4 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|327310411|ref|YP_004337308.1| - 4.4e-06 24.8 10.1 4.4e-06 24.8 7.0 3.0 1 1 2 3 3 3 2 V-type ATPase 116kDa subunit family ABC_tran PF00005.22 gi|327310411|ref|YP_004337308.1| - 5.5e-05 23.4 0.9 0.016 15.4 0.0 4.0 3 2 0 3 3 3 1 ABC transporter AAA_29 PF13555.1 gi|327310411|ref|YP_004337308.1| - 6.2e-05 22.4 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain APG6 PF04111.7 gi|327310411|ref|YP_004337308.1| - 0.00012 21.3 44.8 0.018 14.1 2.1 4.4 2 2 2 4 4 4 4 Autophagy protein Apg6 IncA PF04156.9 gi|327310411|ref|YP_004337308.1| - 0.00018 21.1 61.0 0.008 15.7 6.1 5.1 2 2 2 4 4 4 3 IncA protein Reo_sigmaC PF04582.7 gi|327310411|ref|YP_004337308.1| - 0.00029 20.1 1.3 7.8 5.5 0.0 4.4 3 1 1 4 4 4 0 Reovirus sigma C capsid protein PspA_IM30 PF04012.7 gi|327310411|ref|YP_004337308.1| - 0.00049 19.5 14.1 0.00049 19.5 9.8 5.0 3 2 0 5 5 5 1 PspA/IM30 family Baculo_PEP_C PF04513.7 gi|327310411|ref|YP_004337308.1| - 0.00059 19.6 8.3 3.7 7.3 0.0 6.3 5 2 0 6 6 6 1 Baculovirus polyhedron envelope protein, PEP, C terminus Rad50_zn_hook PF04423.9 gi|327310411|ref|YP_004337308.1| - 0.0012 18.2 0.2 0.0012 18.2 0.2 5.5 4 0 0 4 4 4 1 Rad50 zinc hook motif DUF3452 PF11934.3 gi|327310411|ref|YP_004337308.1| - 0.014 14.6 1.5 0.82 8.9 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3452) Snapin_Pallidin PF14712.1 gi|327310411|ref|YP_004337308.1| - 0.02 15.2 0.6 0.02 15.2 0.4 5.4 4 1 1 6 6 5 0 Snapin/Pallidin RP-C_C PF11800.3 gi|327310411|ref|YP_004337308.1| - 0.05 13.2 23.3 0.24 11.0 1.7 5.2 4 1 1 5 5 5 0 Replication protein C C-terminal region CENP-F_leu_zip PF10473.4 gi|327310411|ref|YP_004337308.1| - 0.08 12.7 52.0 0.093 12.5 2.2 5.0 4 1 0 5 5 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TBPIP PF07106.8 gi|327310411|ref|YP_004337308.1| - 0.098 12.2 38.8 0.25 10.8 1.9 6.3 3 2 2 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) cobW PF02492.14 gi|327310411|ref|YP_004337308.1| - 0.099 12.0 0.1 0.9 8.9 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Cytochrom_C_2 PF01322.15 gi|327310411|ref|YP_004337308.1| - 0.12 12.8 1.2 5.7 7.5 0.0 3.2 3 0 0 3 3 3 0 Cytochrome C' DUF342 PF03961.8 gi|327310411|ref|YP_004337308.1| - 0.16 10.3 40.1 0.024 13.0 0.8 4.6 2 2 1 4 4 4 0 Protein of unknown function (DUF342) MMR_HSR1 PF01926.18 gi|327310411|ref|YP_004337308.1| - 0.18 11.7 0.7 0.66 9.9 0.1 2.4 2 1 0 2 2 1 0 50S ribosome-binding GTPase Retrotrans_gag PF03732.12 gi|327310411|ref|YP_004337308.1| - 0.33 11.0 11.3 6.9 6.8 0.1 4.3 3 1 0 4 4 4 0 Retrotransposon gag protein FlaC_arch PF05377.6 gi|327310411|ref|YP_004337308.1| - 0.43 10.5 0.1 0.43 10.5 0.0 7.2 7 1 1 8 8 7 0 Flagella accessory protein C (FlaC) WXG100 PF06013.7 gi|327310411|ref|YP_004337308.1| - 0.66 10.0 11.5 1.9 8.5 0.0 5.6 5 2 1 6 6 4 0 Proteins of 100 residues with WXG GP41 PF00517.12 gi|327310411|ref|YP_004337308.1| - 0.83 9.1 2.5 6.7 6.2 0.0 3.0 3 0 0 3 3 2 0 Retroviral envelope protein DUF4298 PF14131.1 gi|327310411|ref|YP_004337308.1| - 0.84 9.5 20.3 0.88 9.4 0.6 6.1 5 1 1 6 6 6 0 Domain of unknown function (DUF4298) HSBP1 PF06825.7 gi|327310411|ref|YP_004337308.1| - 0.99 9.0 5.2 4 7.0 0.0 4.1 4 0 0 4 4 4 0 Heat shock factor binding protein 1 AAA_22 PF13401.1 gi|327310411|ref|YP_004337308.1| - 1.5 8.9 8.1 5 7.2 0.1 4.1 3 2 0 3 3 3 0 AAA domain DUF1664 PF07889.7 gi|327310411|ref|YP_004337308.1| - 2 8.1 19.4 6 6.6 0.2 5.5 3 2 3 6 6 5 0 Protein of unknown function (DUF1664) Tropomyosin PF00261.15 gi|327310411|ref|YP_004337308.1| - 2.1 7.3 56.6 0.14 11.2 5.9 5.2 4 1 1 5 5 5 0 Tropomyosin FlxA PF14282.1 gi|327310411|ref|YP_004337308.1| - 3.2 7.7 8.0 5.9 6.8 0.1 4.4 5 0 0 5 5 5 0 FlxA-like protein T4SS PF07996.6 gi|327310411|ref|YP_004337308.1| - 3.6 7.3 7.8 24 4.7 0.3 4.2 3 2 1 4 4 4 0 Type IV secretion system proteins KaiC PF06745.8 gi|327310411|ref|YP_004337308.1| - 3.7 6.5 9.7 0.96 8.5 0.3 3.7 4 0 0 4 4 4 0 KaiC NAAA-beta PF15508.1 gi|327310411|ref|YP_004337308.1| - 4.4 7.7 7.6 44 4.5 0.1 4.9 6 1 1 7 7 3 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase BLOC1_2 PF10046.4 gi|327310411|ref|YP_004337308.1| - 5.8 7.1 34.9 0.12 12.5 0.4 7.3 4 4 5 9 9 9 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.4 gi|327310411|ref|YP_004337308.1| - 6.1 5.4 34.4 2.3 6.8 4.1 4.9 2 2 2 4 4 4 0 Intra-flagellar transport protein 57 HAD_2 PF13419.1 gi|327310411|ref|YP_004337308.1| - 8.3 6.5 9.1 5.7 7.1 0.6 3.8 2 1 1 3 3 3 0 Haloacid dehalogenase-like hydrolase TrmB PF01978.14 gi|327310413|ref|YP_004337310.1| - 3.9e-23 80.9 1.2 4.8e-22 77.4 0.0 2.6 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|327310413|ref|YP_004337310.1| - 5e-08 32.2 0.0 1.2e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|327310413|ref|YP_004337310.1| - 1.6e-07 31.0 0.1 6.7e-07 29.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|327310413|ref|YP_004337310.1| - 1.7e-06 27.6 0.0 3.7e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|327310413|ref|YP_004337310.1| - 3.9e-05 23.1 0.3 0.00017 21.1 0.0 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|327310413|ref|YP_004337310.1| - 4.4e-05 23.5 0.0 0.0001 22.3 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.4 gi|327310413|ref|YP_004337310.1| - 7.9e-05 22.4 0.0 0.00018 21.3 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.11 gi|327310413|ref|YP_004337310.1| - 0.0002 20.8 0.0 0.0005 19.5 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_AsnC-type PF13404.1 gi|327310413|ref|YP_004337310.1| - 0.00044 19.7 0.0 0.00091 18.7 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|327310413|ref|YP_004337310.1| - 0.00064 19.3 0.1 0.0023 17.5 0.0 2.0 2 0 0 2 2 1 1 MarR family HTH_11 PF08279.7 gi|327310413|ref|YP_004337310.1| - 0.00064 19.3 0.1 0.0028 17.2 0.0 2.1 3 0 0 3 3 2 1 HTH domain MarR PF01047.17 gi|327310413|ref|YP_004337310.1| - 0.0009 18.8 0.0 0.0034 17.0 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_9 PF08221.6 gi|327310413|ref|YP_004337310.1| - 0.0027 17.5 0.0 0.0079 16.0 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain GntR PF00392.16 gi|327310413|ref|YP_004337310.1| - 0.0086 15.5 0.1 0.17 11.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|327310413|ref|YP_004337310.1| - 0.012 15.2 0.1 0.036 13.7 0.0 1.8 2 0 0 2 2 1 0 Homeodomain-like domain HARE-HTH PF05066.8 gi|327310413|ref|YP_004337310.1| - 0.015 15.5 0.3 0.91 9.9 0.0 2.9 3 0 0 3 3 3 0 HB1, ASXL, restriction endonuclease HTH domain Penicillinase_R PF03965.11 gi|327310413|ref|YP_004337310.1| - 0.016 15.3 0.0 0.033 14.2 0.0 1.7 1 1 0 1 1 1 0 Penicillinase repressor HTH_34 PF13601.1 gi|327310413|ref|YP_004337310.1| - 0.017 15.0 0.0 0.057 13.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|327310413|ref|YP_004337310.1| - 0.026 14.5 0.0 0.067 13.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Regulator_TrmB PF11495.3 gi|327310413|ref|YP_004337310.1| - 0.034 13.1 0.4 0.19 10.6 0.3 2.0 1 1 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_27 PF13463.1 gi|327310413|ref|YP_004337310.1| - 0.037 14.3 0.0 0.28 11.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain FaeA PF04703.7 gi|327310413|ref|YP_004337310.1| - 0.044 13.9 0.0 0.085 13.0 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein DUF387 PF04079.11 gi|327310413|ref|YP_004337310.1| - 0.056 12.8 0.1 0.18 11.1 0.0 1.8 2 1 1 3 3 3 0 Putative transcriptional regulators (Ypuh-like) HTH_29 PF13551.1 gi|327310413|ref|YP_004337310.1| - 0.086 12.9 0.0 0.18 11.9 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn helix Radical_SAM PF04055.16 gi|327310414|ref|YP_004337311.1| - 9.9e-23 81.1 0.1 6e-22 78.5 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|327310414|ref|YP_004337311.1| - 5.6e-07 29.5 0.1 1.8e-06 27.9 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|327310414|ref|YP_004337311.1| - 4.9e-06 26.7 0.0 1e-05 25.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-Di19 PF05605.7 gi|327310414|ref|YP_004337311.1| - 0.17 12.0 2.0 6.8 6.9 0.1 2.8 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Pribosyltran PF00156.22 gi|327310415|ref|YP_004337312.1| - 4e-16 58.8 1.2 8.7e-15 54.5 0.8 2.2 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|327310415|ref|YP_004337312.1| - 0.00026 20.2 0.0 0.00032 19.9 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|327310415|ref|YP_004337312.1| - 0.0092 15.3 0.0 0.013 14.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase Pribosyl_synth PF14572.1 gi|327310415|ref|YP_004337312.1| - 0.028 14.1 0.2 0.047 13.4 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain DHO_dh PF01180.16 gi|327310416|ref|YP_004337313.1| - 9.2e-30 103.6 0.0 1.4e-28 99.7 0.0 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|327310416|ref|YP_004337313.1| - 8.1e-05 21.9 0.4 0.00062 19.0 0.1 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase PIN PF01850.16 gi|327310417|ref|YP_004337314.1| - 6e-09 36.2 0.5 6.8e-09 36.0 0.4 1.1 1 0 0 1 1 1 1 PIN domain Herpes_UL3 PF03369.8 gi|327310417|ref|YP_004337314.1| - 0.025 14.5 0.1 0.047 13.6 0.0 1.4 1 1 0 1 1 1 0 Herpesvirus UL3 protein HrpB4 PF09502.5 gi|327310417|ref|YP_004337314.1| - 0.042 13.0 0.3 0.85 8.7 0.1 2.1 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB4) PIN_3 PF13470.1 gi|327310417|ref|YP_004337314.1| - 0.043 14.4 0.5 0.055 14.1 0.3 1.4 1 1 0 1 1 1 0 PIN domain GlutR_dimer PF00745.15 gi|327310417|ref|YP_004337314.1| - 0.13 12.1 0.6 0.4 10.6 0.3 1.8 2 0 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain Lactate_perm PF02652.9 gi|327310419|ref|YP_004337316.1| - 8.8e-99 331.3 46.5 1.5e-98 330.6 32.3 1.4 1 1 0 1 1 1 1 L-lactate permease Malate_synthase PF01274.17 gi|327310420|ref|YP_004337317.1| - 2.9e-39 134.4 0.0 1.7e-34 118.7 0.0 2.3 2 0 0 2 2 2 2 Malate synthase HpcH_HpaI PF03328.9 gi|327310420|ref|YP_004337317.1| - 0.14 11.0 0.0 0.26 10.1 0.0 1.4 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family FAD-oxidase_C PF02913.14 gi|327310421|ref|YP_004337318.1| - 4.6e-44 150.5 0.0 6.6e-44 150.0 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|327310421|ref|YP_004337318.1| - 1.2e-33 115.5 0.4 5.8e-33 113.3 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain Fer4_8 PF13183.1 gi|327310422|ref|YP_004337319.1| - 5.9e-10 39.0 4.9 7.6e-10 38.6 3.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327310422|ref|YP_004337319.1| - 4.3e-08 33.3 4.5 6.3e-08 32.8 3.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327310422|ref|YP_004337319.1| - 1.4e-07 31.8 3.8 0.00024 21.4 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327310422|ref|YP_004337319.1| - 3e-07 30.7 5.3 5.3e-07 29.9 3.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327310422|ref|YP_004337319.1| - 8.9e-07 28.6 2.2 0.021 14.6 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327310422|ref|YP_004337319.1| - 3.8e-06 26.5 7.8 7.1e-05 22.5 6.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|327310422|ref|YP_004337319.1| - 1.4e-05 24.4 12.8 0.00023 20.5 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|327310422|ref|YP_004337319.1| - 4e-05 23.1 4.3 0.0085 15.7 0.2 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_9 PF13187.1 gi|327310422|ref|YP_004337319.1| - 7.5e-05 22.9 8.9 0.00063 19.9 6.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327310422|ref|YP_004337319.1| - 0.00049 19.8 11.6 0.039 13.8 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|327310422|ref|YP_004337319.1| - 0.00086 19.0 1.2 0.00086 19.0 0.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|327310422|ref|YP_004337319.1| - 0.0053 17.4 8.3 0.021 15.5 5.8 1.8 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|327310422|ref|YP_004337319.1| - 0.027 14.7 10.4 0.65 10.4 1.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|327310422|ref|YP_004337319.1| - 0.046 14.3 4.0 1.3 9.6 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|327310422|ref|YP_004337319.1| - 0.58 10.8 14.3 1.6 9.4 1.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|327310422|ref|YP_004337319.1| - 4.6 7.7 8.0 15 6.0 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain CCG PF02754.11 gi|327310423|ref|YP_004337320.1| - 2.3e-11 43.5 0.0 8e-08 32.1 0.0 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Sod_Fe_C PF02777.13 gi|327310424|ref|YP_004337321.1| - 1.9e-37 127.2 0.6 3e-37 126.7 0.4 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|327310424|ref|YP_004337321.1| - 1e-28 99.3 1.0 1.9e-28 98.5 0.0 1.9 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain 5-FTHF_cyc-lig PF01812.15 gi|327310425|ref|YP_004337322.1| - 1.9e-32 112.5 0.0 2.2e-32 112.3 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family TrmB PF01978.14 gi|327310426|ref|YP_004337323.1| - 3.9e-06 26.4 0.4 8e-06 25.4 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|327310426|ref|YP_004337323.1| - 6.3e-05 23.0 0.1 0.00011 22.2 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor TFIIE_alpha PF02002.12 gi|327310426|ref|YP_004337323.1| - 0.0004 19.8 0.1 0.00077 18.9 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.5 gi|327310426|ref|YP_004337323.1| - 0.0058 16.1 0.0 0.0086 15.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|327310426|ref|YP_004337323.1| - 0.011 15.1 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.7 gi|327310426|ref|YP_004337323.1| - 0.029 13.8 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|327310426|ref|YP_004337323.1| - 0.032 13.9 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 MarR family Sulfolobus_pRN PF05584.6 gi|327310426|ref|YP_004337323.1| - 0.035 14.0 0.1 0.068 13.1 0.1 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein MarR_2 PF12802.2 gi|327310426|ref|YP_004337323.1| - 0.05 13.2 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF977 PF06163.6 gi|327310426|ref|YP_004337323.1| - 0.073 12.8 0.1 0.19 11.4 0.1 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) HTH_20 PF12840.2 gi|327310426|ref|YP_004337323.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain BPD_transp_1 PF00528.17 gi|327310427|ref|YP_004337324.1| - 1.5e-10 40.9 11.4 1.5e-10 40.9 7.9 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component VPEP PF07589.6 gi|327310427|ref|YP_004337324.1| - 0.028 14.3 0.6 0.028 14.3 0.4 3.3 3 0 0 3 3 3 0 PEP-CTERM motif UPF0066 PF01980.11 gi|327310428|ref|YP_004337325.1| - 7.6e-36 122.7 0.0 8.6e-36 122.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 SBP_bac_11 PF13531.1 gi|327310429|ref|YP_004337326.1| - 1.7e-23 83.4 0.1 2e-23 83.2 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|327310429|ref|YP_004337326.1| - 0.00013 21.7 0.2 0.00032 20.5 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|327310429|ref|YP_004337326.1| - 0.028 14.1 0.1 0.053 13.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein ABC_tran PF00005.22 gi|327310430|ref|YP_004337327.1| - 1.3e-21 77.3 0.0 1.6e-21 77.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310430|ref|YP_004337327.1| - 1.2e-12 48.3 0.0 2.1e-05 24.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|327310430|ref|YP_004337327.1| - 2.1e-05 24.9 0.1 2.8e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|327310430|ref|YP_004337327.1| - 3e-05 23.3 0.1 0.024 13.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|327310430|ref|YP_004337327.1| - 0.0002 21.3 0.3 0.00044 20.2 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|327310430|ref|YP_004337327.1| - 0.002 17.5 0.0 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|327310430|ref|YP_004337327.1| - 0.013 14.0 0.0 0.016 13.7 0.0 1.0 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|327310430|ref|YP_004337327.1| - 0.014 14.5 0.0 0.21 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|327310430|ref|YP_004337327.1| - 0.016 15.3 0.1 0.041 14.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|327310430|ref|YP_004337327.1| - 0.022 14.2 0.0 0.03 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|327310430|ref|YP_004337327.1| - 0.045 13.6 0.0 0.071 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|327310430|ref|YP_004337327.1| - 0.052 13.2 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|327310430|ref|YP_004337327.1| - 0.053 13.1 0.0 0.06 12.9 0.0 1.2 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|327310430|ref|YP_004337327.1| - 0.069 12.3 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|327310430|ref|YP_004337327.1| - 0.07 13.9 0.0 0.22 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|327310430|ref|YP_004337327.1| - 0.084 12.7 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|327310430|ref|YP_004337327.1| - 0.15 12.0 0.0 0.2 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|327310430|ref|YP_004337327.1| - 0.18 10.3 0.2 0.3 9.6 0.1 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Epimerase PF01370.16 gi|327310431|ref|YP_004337328.1| - 1.2e-16 60.8 0.0 1.8e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|327310431|ref|YP_004337328.1| - 1.3e-14 53.7 0.0 1.8e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|327310431|ref|YP_004337328.1| - 6.2e-08 32.8 0.1 9.4e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|327310431|ref|YP_004337328.1| - 1.7e-05 23.7 0.1 0.0003 19.5 0.0 2.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Glyco_transf_4 PF13439.1 gi|327310431|ref|YP_004337328.1| - 0.00064 19.4 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 adh_short PF00106.20 gi|327310431|ref|YP_004337328.1| - 0.013 15.3 0.0 0.25 11.2 0.0 2.3 1 1 0 1 1 1 0 short chain dehydrogenase Couple_hipA PF13657.1 gi|327310432|ref|YP_004337329.1| - 0.052 13.8 0.0 0.075 13.3 0.0 1.3 1 0 0 1 1 1 0 HipA N-terminal domain PspA_IM30 PF04012.7 gi|327310432|ref|YP_004337329.1| - 0.096 12.0 0.1 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 PspA/IM30 family Radical_SAM PF04055.16 gi|327310433|ref|YP_004337330.1| - 3.3e-26 92.4 0.0 1.1e-25 90.7 0.0 1.9 2 1 1 3 3 3 1 Radical SAM superfamily B12-binding PF02310.14 gi|327310433|ref|YP_004337330.1| - 9.5e-13 48.0 0.1 2.8e-12 46.5 0.1 1.8 1 0 0 1 1 1 1 B12 binding domain AP_endonuc_2 PF01261.19 gi|327310433|ref|YP_004337330.1| - 0.014 14.7 0.0 0.042 13.1 0.0 1.9 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel PPDK_N PF01326.14 gi|327310435|ref|YP_004337332.1| - 2.5e-104 348.8 0.1 4.8e-104 347.9 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|327310435|ref|YP_004337332.1| - 3.5e-75 252.6 0.0 5.3e-75 252.0 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|327310435|ref|YP_004337332.1| - 7e-28 96.0 0.2 1.8e-27 94.7 0.1 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Peptidase_M22 PF00814.20 gi|327310436|ref|YP_004337333.1| - 4.5e-76 255.8 0.3 5.3e-76 255.6 0.2 1.0 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.14 gi|327310437|ref|YP_004337334.1| - 1.6e-08 34.1 0.7 2.2e-08 33.7 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Auto_anti-p27 PF06677.7 gi|327310437|ref|YP_004337334.1| - 0.00013 21.6 1.0 0.3 10.9 0.1 2.1 2 0 0 2 2 2 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|327310437|ref|YP_004337334.1| - 0.00014 21.4 0.2 0.00017 21.2 0.1 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|327310437|ref|YP_004337334.1| - 0.00056 19.6 2.1 0.00072 19.3 1.5 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain GFA PF04828.9 gi|327310437|ref|YP_004337334.1| - 0.0012 18.7 1.0 0.68 9.9 0.0 2.1 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|327310437|ref|YP_004337334.1| - 0.02 14.6 0.2 0.03 14.1 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon ADK_lid PF05191.9 gi|327310437|ref|YP_004337334.1| - 0.021 14.4 4.6 0.22 11.1 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ISL3 PF14690.1 gi|327310437|ref|YP_004337334.1| - 0.023 14.7 6.4 0.062 13.3 0.4 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 IBR PF01485.16 gi|327310437|ref|YP_004337334.1| - 0.035 13.9 0.2 0.039 13.8 0.2 1.1 1 0 0 1 1 1 0 IBR domain zf-NADH-PPase PF09297.6 gi|327310437|ref|YP_004337334.1| - 0.047 13.2 4.2 0.26 10.8 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|327310437|ref|YP_004337334.1| - 0.048 13.0 0.8 0.87 8.9 0.0 2.4 3 0 0 3 3 3 0 TFIIB zinc-binding DUF35_N PF12172.3 gi|327310437|ref|YP_004337334.1| - 0.052 13.4 1.1 5.3 7.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|327310437|ref|YP_004337334.1| - 0.053 12.7 1.6 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327310437|ref|YP_004337334.1| - 0.061 12.8 1.6 2.1 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|327310437|ref|YP_004337334.1| - 0.092 12.3 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein S27 YhfH PF14149.1 gi|327310437|ref|YP_004337334.1| - 0.13 12.0 2.1 10 5.9 0.2 2.3 1 1 1 2 2 2 0 YhfH-like protein DUF1936 PF09151.5 gi|327310437|ref|YP_004337334.1| - 0.15 11.5 5.9 4.1 6.9 0.6 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF1936) zf-C4_Topoisom PF01396.14 gi|327310437|ref|YP_004337334.1| - 0.16 11.5 1.1 0.98 8.9 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF2387 PF09526.5 gi|327310437|ref|YP_004337334.1| - 0.18 11.7 0.6 0.24 11.3 0.4 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_ribbon_recom PF13408.1 gi|327310437|ref|YP_004337334.1| - 0.22 11.8 3.4 0.47 10.7 2.4 1.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C2H2_3 PF13878.1 gi|327310437|ref|YP_004337334.1| - 0.33 10.5 4.3 4.2 7.0 0.7 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Nudix_N_2 PF14803.1 gi|327310437|ref|YP_004337334.1| - 0.38 10.4 6.1 4.1 7.1 3.9 2.1 1 1 0 1 1 1 0 Nudix N-terminal zf-Mss51 PF13824.1 gi|327310437|ref|YP_004337334.1| - 0.39 10.6 3.2 3.2 7.6 1.9 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_S24e PF01282.14 gi|327310438|ref|YP_004337335.1| - 1.5e-23 82.4 0.8 2.2e-23 81.8 0.1 1.7 1 1 1 2 2 2 1 Ribosomal protein S24e PsiE PF06146.7 gi|327310439|ref|YP_004337336.1| - 4.8e-14 52.3 6.8 4.8e-14 52.3 4.7 2.2 2 2 2 4 4 4 1 Phosphate-starvation-inducible E DUF4407 PF14362.1 gi|327310439|ref|YP_004337336.1| - 0.045 12.7 4.4 0.063 12.2 3.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF843 PF05814.6 gi|327310439|ref|YP_004337336.1| - 8.1 6.3 10.6 1.5 8.6 4.4 2.0 1 1 1 2 2 2 0 Baculovirus protein of unknown function (DUF843) Methyltransf_11 PF08241.7 gi|327310440|ref|YP_004337337.1| - 7.2e-10 39.2 0.0 1.1e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327310440|ref|YP_004337337.1| - 0.078 13.4 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310440|ref|YP_004337337.1| - 0.14 12.7 0.0 0.29 11.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|327310440|ref|YP_004337337.1| - 0.14 11.1 0.0 0.25 10.4 0.0 1.5 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Abi PF02517.11 gi|327310441|ref|YP_004337338.1| - 3.1e-13 49.6 2.2 3.1e-13 49.6 1.5 2.0 2 0 0 2 2 2 1 CAAX protease self-immunity Fe_dep_repress PF01325.14 gi|327310442|ref|YP_004337339.1| - 4e-16 58.6 0.4 1.4e-15 56.9 0.1 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|327310442|ref|YP_004337339.1| - 9.9e-11 41.1 0.7 3.1e-10 39.5 0.5 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|327310442|ref|YP_004337339.1| - 6.1e-09 35.4 0.3 1.4e-08 34.2 0.1 1.7 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.1 gi|327310442|ref|YP_004337339.1| - 2.7e-07 30.8 0.3 6.8e-07 29.5 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|327310442|ref|YP_004337339.1| - 5.3e-07 29.1 4.3 6.4e-06 25.6 0.1 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|327310442|ref|YP_004337339.1| - 1.4e-06 27.5 0.3 3.4e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|327310442|ref|YP_004337339.1| - 2.9e-05 23.6 0.1 7.9e-05 22.2 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_Crp_2 PF13545.1 gi|327310442|ref|YP_004337339.1| - 0.00013 21.6 0.0 0.00031 20.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|327310442|ref|YP_004337339.1| - 0.00069 19.5 0.1 0.011 15.7 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|327310442|ref|YP_004337339.1| - 0.00076 19.1 0.1 0.0015 18.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.6 gi|327310442|ref|YP_004337339.1| - 0.0012 18.5 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_10 PF04967.7 gi|327310442|ref|YP_004337339.1| - 0.0016 18.0 0.0 0.005 16.3 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|327310442|ref|YP_004337339.1| - 0.0016 17.8 1.0 0.0044 16.5 0.1 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Rrf2 PF02082.15 gi|327310442|ref|YP_004337339.1| - 0.0017 18.4 0.0 0.0037 17.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|327310442|ref|YP_004337339.1| - 0.0018 18.0 0.7 0.0049 16.6 0.0 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|327310442|ref|YP_004337339.1| - 0.0023 17.3 1.5 0.0046 16.3 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|327310442|ref|YP_004337339.1| - 0.0031 17.3 0.0 0.0051 16.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|327310442|ref|YP_004337339.1| - 0.0032 17.0 0.1 0.007 16.0 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|327310442|ref|YP_004337339.1| - 0.0035 16.8 0.1 0.026 14.0 0.0 2.0 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_23 PF13384.1 gi|327310442|ref|YP_004337339.1| - 0.0099 15.5 0.1 0.036 13.7 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_12 PF08461.5 gi|327310442|ref|YP_004337339.1| - 0.011 15.4 0.1 0.024 14.3 0.1 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_11 PF08279.7 gi|327310442|ref|YP_004337339.1| - 0.04 13.5 0.4 0.094 12.3 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_29 PF13551.1 gi|327310442|ref|YP_004337339.1| - 0.061 13.4 0.1 0.13 12.4 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn helix Topoisom_bac PF01131.15 gi|327310442|ref|YP_004337339.1| - 0.068 11.9 0.0 0.087 11.6 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase Nup35_RRM_2 PF14605.1 gi|327310442|ref|YP_004337339.1| - 0.089 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif HTH_34 PF13601.1 gi|327310442|ref|YP_004337339.1| - 0.1 12.6 0.0 0.24 11.4 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_3 PF01381.17 gi|327310442|ref|YP_004337339.1| - 0.13 12.0 0.4 3.5 7.5 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix HTH_1 PF00126.22 gi|327310442|ref|YP_004337339.1| - 0.41 10.4 1.9 1.5 8.5 0.3 2.4 2 1 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Nramp PF01566.13 gi|327310443|ref|YP_004337340.1| - 1.4e-74 251.0 26.3 1.8e-74 250.6 18.2 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein ATP-grasp_2 PF08442.5 gi|327310444|ref|YP_004337341.1| - 3.7e-62 209.3 0.8 3.7e-62 209.3 0.5 1.4 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|327310444|ref|YP_004337341.1| - 1.1e-15 57.5 0.3 2.7e-15 56.3 0.2 1.6 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|327310444|ref|YP_004337341.1| - 2.5e-14 53.0 4.3 3.6e-12 45.9 0.2 2.6 3 0 0 3 3 3 2 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|327310444|ref|YP_004337341.1| - 6.2e-08 32.1 0.4 1.4e-07 30.9 0.3 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|327310444|ref|YP_004337341.1| - 3.9e-06 26.7 0.2 1.1e-05 25.2 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.6 gi|327310444|ref|YP_004337341.1| - 2.6e-05 23.7 0.1 5.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|327310444|ref|YP_004337341.1| - 6.4e-05 22.6 0.3 0.00013 21.6 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|327310444|ref|YP_004337341.1| - 0.0031 16.8 0.1 0.0054 16.0 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ribosomal_L22 PF00237.14 gi|327310444|ref|YP_004337341.1| - 0.0092 15.9 0.8 0.038 13.9 0.0 2.3 3 0 0 3 3 3 1 Ribosomal protein L22p/L17e CoA_binding PF02629.14 gi|327310445|ref|YP_004337342.1| - 2.8e-21 75.8 2.5 2.8e-21 75.8 1.8 2.5 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|327310445|ref|YP_004337342.1| - 9.5e-11 41.5 0.2 1.7e-10 40.6 0.1 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|327310445|ref|YP_004337342.1| - 1.2e-10 41.0 0.1 2.9e-10 39.8 0.0 1.6 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|327310445|ref|YP_004337342.1| - 1.4e-08 34.9 1.8 1.7e-07 31.3 0.2 2.6 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|327310445|ref|YP_004337342.1| - 0.025 15.0 0.1 0.48 10.9 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold SHOCT PF09851.4 gi|327310445|ref|YP_004337342.1| - 0.14 11.6 0.6 0.34 10.4 0.4 1.6 1 0 0 1 1 1 0 Short C-terminal domain Aminotran_1_2 PF00155.16 gi|327310446|ref|YP_004337343.1| - 5.3e-41 140.7 0.0 6.3e-41 140.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|327310446|ref|YP_004337343.1| - 2e-12 46.3 0.0 6.3e-12 44.7 0.0 1.7 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Prim-Pol PF09250.6 gi|327310446|ref|YP_004337343.1| - 0.033 14.1 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 Bifunctional DNA primase/polymerase, N-terminal PALP PF00291.20 gi|327310447|ref|YP_004337344.1| - 9.4e-87 291.0 4.1 1.2e-86 290.6 2.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|327310447|ref|YP_004337344.1| - 5e-12 45.0 0.1 2e-11 43.1 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|327310447|ref|YP_004337344.1| - 0.00079 19.0 0.0 0.0019 17.8 0.0 1.7 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|327310447|ref|YP_004337344.1| - 0.0012 18.3 0.4 0.24 10.9 0.0 2.7 2 0 0 2 2 2 2 ACT domain Lactamase_B_3 PF13483.1 gi|327310447|ref|YP_004337344.1| - 0.062 13.0 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain ACT_4 PF13291.1 gi|327310447|ref|YP_004337344.1| - 0.086 13.1 0.0 0.24 11.7 0.0 1.8 1 0 0 1 1 1 0 ACT domain tRNA_SAD PF07973.9 gi|327310448|ref|YP_004337345.1| - 5.5e-12 45.3 0.1 9.8e-12 44.5 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|327310448|ref|YP_004337345.1| - 1.1e-09 37.1 0.2 1.5e-09 36.6 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DAO PF01266.19 gi|327310449|ref|YP_004337346.1| - 5.5e-55 186.7 1.0 6.5e-55 186.4 0.7 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|327310449|ref|YP_004337346.1| - 6e-05 23.0 0.3 0.017 14.9 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|327310449|ref|YP_004337346.1| - 0.00012 21.9 0.4 0.00026 20.9 0.3 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|327310449|ref|YP_004337346.1| - 0.0002 21.4 0.1 0.0021 18.1 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|327310449|ref|YP_004337346.1| - 0.00029 21.1 0.1 0.00091 19.5 0.1 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|327310449|ref|YP_004337346.1| - 0.0072 16.1 0.3 0.5 10.1 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding Ldh_1_N PF00056.18 gi|327310449|ref|YP_004337346.1| - 0.014 15.2 0.4 0.027 14.2 0.3 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|327310449|ref|YP_004337346.1| - 0.028 13.2 0.2 0.43 9.3 0.1 2.1 2 0 0 2 2 2 0 FAD binding domain Mqo PF06039.10 gi|327310449|ref|YP_004337346.1| - 0.04 12.1 0.1 0.053 11.6 0.1 1.1 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) UDPG_MGDP_dh_N PF03721.9 gi|327310449|ref|YP_004337346.1| - 0.043 13.1 0.7 0.069 12.5 0.5 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|327310449|ref|YP_004337346.1| - 0.087 11.7 0.4 0.15 10.9 0.3 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|327310449|ref|YP_004337346.1| - 0.17 10.4 0.2 0.23 10.0 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Thi4 PF01946.12 gi|327310449|ref|YP_004337346.1| - 0.3 10.1 2.8 0.32 10.0 0.1 2.3 3 0 0 3 3 3 0 Thi4 family FUR PF01475.14 gi|327310450|ref|YP_004337347.1| - 3.3e-22 78.6 0.1 4e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_24 PF13412.1 gi|327310450|ref|YP_004337347.1| - 0.0002 20.6 0.4 0.0039 16.5 0.0 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|327310450|ref|YP_004337347.1| - 0.00047 19.8 0.3 0.0068 16.0 0.0 2.6 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|327310450|ref|YP_004337347.1| - 0.00055 19.6 0.1 0.0025 17.5 0.0 2.1 3 0 0 3 3 3 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.11 gi|327310450|ref|YP_004337347.1| - 0.0015 18.6 0.0 0.0026 17.8 0.0 1.5 1 1 0 1 1 1 1 Penicillinase repressor HxlR PF01638.12 gi|327310450|ref|YP_004337347.1| - 0.0036 16.9 0.0 0.0087 15.6 0.0 1.8 1 1 0 1 1 1 1 HxlR-like helix-turn-helix LexA_DNA_bind PF01726.11 gi|327310450|ref|YP_004337347.1| - 0.0061 16.1 0.0 0.023 14.2 0.0 2.0 2 1 1 3 3 3 1 LexA DNA binding domain Lant_dehyd_C PF04738.8 gi|327310450|ref|YP_004337347.1| - 0.015 13.5 0.0 0.019 13.1 0.0 1.1 1 0 0 1 1 1 0 Lantibiotic dehydratase, C terminus HTH_Tnp_Tc3_2 PF01498.13 gi|327310450|ref|YP_004337347.1| - 0.022 14.7 0.0 0.058 13.4 0.0 1.7 2 0 0 2 2 1 0 Transposase DUF1574 PF07611.6 gi|327310450|ref|YP_004337347.1| - 0.024 13.5 0.1 0.061 12.1 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1574) DUF4423 PF14394.1 gi|327310450|ref|YP_004337347.1| - 0.032 13.7 0.0 0.04 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.15 gi|327310450|ref|YP_004337347.1| - 0.036 14.1 0.0 12 6.0 0.0 2.4 2 1 0 2 2 2 0 Transcriptional regulator HTH_5 PF01022.15 gi|327310450|ref|YP_004337347.1| - 0.04 13.5 1.6 0.53 9.9 0.1 3.1 3 1 0 3 3 3 0 Bacterial regulatory protein, arsR family Sigma70_r1_1 PF03979.9 gi|327310450|ref|YP_004337347.1| - 0.041 13.8 0.2 0.071 13.0 0.1 1.6 2 0 0 2 2 1 0 Sigma-70 factor, region 1.1 HTH_28 PF13518.1 gi|327310450|ref|YP_004337347.1| - 0.075 13.0 0.0 2.3 8.2 0.0 2.5 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|327310450|ref|YP_004337347.1| - 0.083 12.5 0.0 0.72 9.5 0.0 2.5 3 0 0 3 3 3 0 HTH domain HU-DNA_bdg PF14848.1 gi|327310450|ref|YP_004337347.1| - 0.093 12.4 0.1 0.63 9.7 0.0 1.9 1 1 1 2 2 2 0 DNA-binding domain B-block_TFIIIC PF04182.7 gi|327310450|ref|YP_004337347.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2513 PF10711.4 gi|327310450|ref|YP_004337347.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_36 PF13730.1 gi|327310450|ref|YP_004337347.1| - 0.56 10.3 0.1 0.56 10.3 0.0 2.4 3 1 0 3 3 2 0 Helix-turn-helix domain Adenosine_kin PF04008.9 gi|327310451|ref|YP_004337348.1| - 5e-76 253.4 0.2 5.6e-76 253.2 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DEAD PF00270.24 gi|327310452|ref|YP_004337349.1| - 5.2e-26 91.1 0.0 3.1e-25 88.6 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|327310452|ref|YP_004337349.1| - 1.6e-16 59.9 0.0 5.2e-15 55.0 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|327310452|ref|YP_004337349.1| - 4.2e-14 52.8 0.1 1.3e-13 51.3 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) HemN_C PF06969.11 gi|327310452|ref|YP_004337349.1| - 0.019 15.0 0.3 0.072 13.1 0.0 2.1 2 0 0 2 2 2 0 HemN C-terminal domain tRNA-synt_1 PF00133.17 gi|327310453|ref|YP_004337350.1| - 2e-104 349.7 0.0 3e-103 345.8 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|327310453|ref|YP_004337350.1| - 2.6e-29 101.9 0.0 4.2e-29 101.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|327310453|ref|YP_004337350.1| - 1.1e-26 93.4 0.0 8.6e-16 57.5 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|327310453|ref|YP_004337350.1| - 0.0026 17.0 0.0 0.031 13.5 0.0 2.2 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|327310453|ref|YP_004337350.1| - 0.058 12.0 0.0 1.5 7.4 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) ACT PF01842.20 gi|327310454|ref|YP_004337351.1| - 2e-08 33.5 0.1 4.4e-08 32.4 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|327310454|ref|YP_004337351.1| - 6.9e-06 26.3 0.0 1.5e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|327310454|ref|YP_004337351.1| - 0.00087 18.9 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|327310454|ref|YP_004337351.1| - 0.0049 16.3 0.0 0.01 15.3 0.0 1.6 1 0 0 1 1 1 1 ACT domain FRD2 PF03197.8 gi|327310454|ref|YP_004337351.1| - 0.1 13.1 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage FRD2 protein ATP_bind_3 PF01171.15 gi|327310455|ref|YP_004337352.1| - 6.6e-12 45.2 0.0 1.3e-11 44.3 0.0 1.4 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|327310455|ref|YP_004337352.1| - 2.7e-05 24.0 0.0 0.00039 20.3 0.0 2.2 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|327310455|ref|YP_004337352.1| - 0.052 13.0 0.0 0.18 11.2 0.0 1.8 2 0 0 2 2 2 0 Asparagine synthase RecR PF02132.10 gi|327310455|ref|YP_004337352.1| - 0.057 12.8 1.0 0.057 12.8 0.7 2.1 3 0 0 3 3 3 0 RecR protein tRNA_Me_trans PF03054.11 gi|327310455|ref|YP_004337352.1| - 0.076 11.5 0.0 0.087 11.3 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase DZR PF12773.2 gi|327310455|ref|YP_004337352.1| - 1 9.1 7.8 7.7 6.4 0.9 2.4 2 0 0 2 2 2 0 Double zinc ribbon GATA PF00320.22 gi|327310455|ref|YP_004337352.1| - 1.8 8.0 7.8 2 7.8 1.0 3.0 2 1 0 2 2 2 0 GATA zinc finger zinc_ribbon_2 PF13240.1 gi|327310455|ref|YP_004337352.1| - 4.1 7.0 5.8 22 4.7 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.3 gi|327310456|ref|YP_004337353.1| - 0.00062 19.5 0.0 0.00082 19.2 0.0 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.4 gi|327310456|ref|YP_004337353.1| - 0.0089 15.6 0.1 0.012 15.2 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|327310456|ref|YP_004337353.1| - 0.01 15.3 0.2 0.019 14.5 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|327310456|ref|YP_004337353.1| - 0.014 15.0 0.3 0.023 14.3 0.1 1.5 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|327310456|ref|YP_004337353.1| - 0.07 13.0 0.0 0.073 13.0 0.0 1.1 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.1 gi|327310456|ref|YP_004337353.1| - 0.16 11.6 0.7 0.27 10.9 0.5 1.3 1 0 0 1 1 1 0 Nudix N-terminal Thy1 PF02511.10 gi|327310457|ref|YP_004337354.1| - 7.6e-41 139.5 0.8 1.3e-40 138.7 0.5 1.4 1 1 0 1 1 1 1 Thymidylate synthase complementing protein Ribosomal_L15e PF00827.12 gi|327310459|ref|YP_004337356.1| - 4.1e-58 196.0 9.4 5e-58 195.7 6.5 1.1 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.12 gi|327310460|ref|YP_004337357.1| - 1e-20 73.9 0.0 3.8e-19 68.8 0.0 2.0 1 1 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.11 gi|327310461|ref|YP_004337358.1| - 0.0033 16.6 0.0 0.0092 15.2 0.0 1.6 1 1 0 1 1 1 1 RNase P subunit p30 RimK PF08443.6 gi|327310463|ref|YP_004337360.1| - 3.6e-39 134.2 0.0 4.7e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|327310463|ref|YP_004337360.1| - 2.2e-18 66.6 0.0 3.4e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|327310463|ref|YP_004337360.1| - 6.2e-17 61.2 0.0 8.7e-17 60.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|327310463|ref|YP_004337360.1| - 6.6e-12 45.5 0.0 1.3e-11 44.6 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|327310463|ref|YP_004337360.1| - 2.1e-09 36.5 0.0 6.4e-07 28.4 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.1 gi|327310463|ref|YP_004337360.1| - 0.11 11.5 0.0 7.5 5.5 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Herpes_gp2 PF05955.6 gi|327310463|ref|YP_004337360.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Equine herpesvirus glycoprotein gp2 DUF3867 PF12983.2 gi|327310464|ref|YP_004337361.1| - 0.025 14.5 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) UPF0051 PF01458.12 gi|327310465|ref|YP_004337362.1| - 1.1e-56 191.8 0.7 2.7e-56 190.6 0.2 1.7 2 0 0 2 2 2 1 Uncharacterized protein family (UPF0051) DUF2710 PF10921.3 gi|327310465|ref|YP_004337362.1| - 0.094 12.8 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) ABC_tran PF00005.22 gi|327310466|ref|YP_004337363.1| - 5e-21 75.4 0.0 6.8e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310466|ref|YP_004337363.1| - 2.8e-10 40.6 0.0 9.1e-09 35.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|327310466|ref|YP_004337363.1| - 5.7e-06 26.2 0.0 8.3e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|327310466|ref|YP_004337363.1| - 2.7e-05 23.6 0.2 5.1e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|327310466|ref|YP_004337363.1| - 6.1e-05 22.3 0.0 0.013 14.7 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MutS_V PF00488.16 gi|327310466|ref|YP_004337363.1| - 0.00077 18.9 0.1 1.1 8.5 0.0 2.1 2 0 0 2 2 2 2 MutS domain V AAA_23 PF13476.1 gi|327310466|ref|YP_004337363.1| - 0.00097 19.5 0.0 0.0014 18.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|327310466|ref|YP_004337363.1| - 0.0088 15.2 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|327310466|ref|YP_004337363.1| - 0.016 14.7 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|327310466|ref|YP_004337363.1| - 0.023 14.3 0.0 0.058 13.0 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|327310466|ref|YP_004337363.1| - 0.023 14.3 0.0 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|327310466|ref|YP_004337363.1| - 0.03 14.2 0.1 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|327310466|ref|YP_004337363.1| - 0.04 13.3 0.0 0.08 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|327310466|ref|YP_004337363.1| - 0.046 13.8 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|327310466|ref|YP_004337363.1| - 0.064 12.1 0.1 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain CoaE PF01121.15 gi|327310466|ref|YP_004337363.1| - 0.08 12.3 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_17 PF13207.1 gi|327310466|ref|YP_004337363.1| - 0.084 13.6 0.0 0.17 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|327310466|ref|YP_004337363.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|327310466|ref|YP_004337363.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|327310466|ref|YP_004337363.1| - 0.16 11.8 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Aminotran_3 PF00202.16 gi|327310467|ref|YP_004337364.1| - 3.4e-107 358.2 0.0 4e-107 357.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|327310467|ref|YP_004337364.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II DUF91 PF01939.11 gi|327310469|ref|YP_004337366.1| - 1.4e-51 174.8 0.0 1.8e-51 174.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|327310469|ref|YP_004337366.1| - 2.3e-06 27.5 0.0 3e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|327310469|ref|YP_004337366.1| - 0.067 13.1 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF83 Peptidase_M42 PF05343.9 gi|327310471|ref|YP_004337368.1| - 7.6e-82 274.3 0.0 8.9e-82 274.1 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|327310471|ref|YP_004337368.1| - 1.3e-10 41.1 0.0 2.1e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|327310471|ref|YP_004337368.1| - 3.9e-07 28.9 0.0 1.5e-05 23.6 0.0 2.1 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.12 gi|327310471|ref|YP_004337368.1| - 1.4e-05 24.9 0.0 6.7e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Lactamase_B_2 PF12706.2 gi|327310472|ref|YP_004337369.1| - 3.7e-09 36.4 0.0 4.6e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|327310472|ref|YP_004337369.1| - 1.6e-07 31.2 0.0 2.3e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|327310472|ref|YP_004337369.1| - 0.0032 17.1 0.1 0.025 14.2 0.0 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily MS_channel PF00924.13 gi|327310473|ref|YP_004337370.1| - 1.7e-19 69.9 0.3 2.8e-19 69.2 0.2 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel Aminotran_1_2 PF00155.16 gi|327310474|ref|YP_004337371.1| - 4.2e-59 200.3 0.0 4.7e-59 200.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|327310474|ref|YP_004337371.1| - 6.3e-10 37.8 0.0 9e-10 37.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|327310474|ref|YP_004337371.1| - 4.9e-08 32.3 0.0 9e-08 31.5 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|327310474|ref|YP_004337371.1| - 9.2e-05 21.3 0.0 0.00015 20.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|327310474|ref|YP_004337371.1| - 0.015 14.4 0.0 0.023 13.8 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Aminotran_MocR PF12897.2 gi|327310474|ref|YP_004337371.1| - 0.057 11.9 0.0 0.1 11.1 0.0 1.3 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase DUF3536 PF12055.3 gi|327310475|ref|YP_004337372.1| - 3.6e-34 118.2 0.0 5.1e-34 117.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3536) Glyco_hydro_57 PF03065.10 gi|327310475|ref|YP_004337372.1| - 3.2e-23 82.2 0.0 1.1e-22 80.4 0.0 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 HPP PF04982.8 gi|327310476|ref|YP_004337373.1| - 0.077 12.8 3.1 0.086 12.6 2.1 1.1 1 0 0 1 1 1 0 HPP family ABC_tran PF00005.22 gi|327310477|ref|YP_004337374.1| - 1.1e-32 113.2 0.0 1.4e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310477|ref|YP_004337374.1| - 7.8e-13 49.0 0.0 4.6e-05 23.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|327310477|ref|YP_004337374.1| - 4.8e-06 26.7 0.0 1.7e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|327310477|ref|YP_004337374.1| - 0.00023 20.4 0.0 0.0017 17.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|327310477|ref|YP_004337374.1| - 0.00036 20.9 0.0 0.00044 20.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|327310477|ref|YP_004337374.1| - 0.00062 19.4 0.4 0.0022 17.7 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain SbcCD_C PF13558.1 gi|327310477|ref|YP_004337374.1| - 0.0014 18.5 0.0 0.013 15.3 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|327310477|ref|YP_004337374.1| - 0.0017 18.3 0.0 0.0033 17.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|327310477|ref|YP_004337374.1| - 0.0022 17.5 0.1 0.0075 15.8 0.0 1.9 3 0 0 3 3 1 1 AAA domain T2SE PF00437.15 gi|327310477|ref|YP_004337374.1| - 0.0077 15.1 0.0 0.012 14.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|327310477|ref|YP_004337374.1| - 0.008 15.6 0.2 0.013 14.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|327310477|ref|YP_004337374.1| - 0.0082 16.3 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|327310477|ref|YP_004337374.1| - 0.012 15.2 0.0 0.031 13.9 0.0 1.7 1 0 0 1 1 1 0 NTPase NACHT PF05729.7 gi|327310477|ref|YP_004337374.1| - 0.015 14.9 0.6 0.027 14.1 0.1 1.5 2 0 0 2 2 1 0 NACHT domain AAA_15 PF13175.1 gi|327310477|ref|YP_004337374.1| - 0.016 14.2 0.0 2 7.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|327310477|ref|YP_004337374.1| - 0.033 13.6 0.0 0.079 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|327310477|ref|YP_004337374.1| - 0.041 13.5 0.1 0.074 12.7 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|327310477|ref|YP_004337374.1| - 0.048 13.3 0.0 0.074 12.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Zeta_toxin PF06414.7 gi|327310477|ref|YP_004337374.1| - 0.055 12.5 0.0 0.088 11.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|327310477|ref|YP_004337374.1| - 0.055 14.2 0.3 0.19 12.5 0.1 2.0 2 1 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|327310477|ref|YP_004337374.1| - 0.06 12.7 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|327310477|ref|YP_004337374.1| - 0.065 12.6 0.5 0.096 12.1 0.3 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|327310477|ref|YP_004337374.1| - 0.069 12.7 0.4 0.12 12.0 0.3 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|327310477|ref|YP_004337374.1| - 0.073 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|327310477|ref|YP_004337374.1| - 0.089 12.6 0.2 0.23 11.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|327310477|ref|YP_004337374.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|327310477|ref|YP_004337374.1| - 0.12 11.8 0.4 0.18 11.2 0.3 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TOBE_2 PF08402.5 gi|327310477|ref|YP_004337374.1| - 0.13 12.3 0.8 0.51 10.3 0.3 2.2 2 0 0 2 2 2 0 TOBE domain DUF3584 PF12128.3 gi|327310477|ref|YP_004337374.1| - 0.14 9.4 0.1 0.19 9.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Mg_chelatase PF01078.16 gi|327310477|ref|YP_004337374.1| - 0.15 11.2 0.1 0.27 10.3 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PIF1 PF05970.9 gi|327310477|ref|YP_004337374.1| - 0.16 10.8 0.1 0.24 10.2 0.1 1.1 1 0 0 1 1 1 0 PIF1-like helicase AAA_13 PF13166.1 gi|327310477|ref|YP_004337374.1| - 0.24 9.7 0.0 0.32 9.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|327310478|ref|YP_004337375.1| - 1.8e-23 83.0 13.4 1.8e-23 83.0 9.3 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|327310479|ref|YP_004337376.1| - 3.4e-32 111.9 0.7 4.4e-32 111.5 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Aldo_ket_red PF00248.16 gi|327310481|ref|YP_004337378.1| - 9e-70 234.7 0.0 1e-69 234.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Synaptonemal_3 PF15191.1 gi|327310481|ref|YP_004337378.1| - 0.13 11.9 0.1 0.35 10.6 0.0 1.7 1 0 0 1 1 1 0 Synaptonemal complex central element protein 3 DEAD PF00270.24 gi|327310482|ref|YP_004337379.1| - 5.1e-30 104.1 0.0 1.7e-29 102.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|327310482|ref|YP_004337379.1| - 4.8e-29 101.4 0.0 1.3e-28 99.9 0.0 1.8 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.26 gi|327310482|ref|YP_004337379.1| - 7.1e-13 48.2 0.5 2.6e-12 46.4 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|327310482|ref|YP_004337379.1| - 9.2e-07 28.8 0.0 2.2e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HypA PF01155.14 gi|327310482|ref|YP_004337379.1| - 0.0086 15.7 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family AAA_19 PF13245.1 gi|327310482|ref|YP_004337379.1| - 0.031 14.0 1.9 0.27 11.0 0.2 2.9 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|327310482|ref|YP_004337379.1| - 0.037 13.4 0.0 0.098 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|327310482|ref|YP_004337379.1| - 0.059 13.5 0.1 0.34 11.0 0.1 2.2 1 1 0 1 1 1 0 AAA domain Phage_term_smal PF05944.7 gi|327310482|ref|YP_004337379.1| - 0.13 11.9 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Phage small terminase subunit SecA_DEAD PF07517.9 gi|327310482|ref|YP_004337379.1| - 0.24 10.6 0.0 0.39 9.9 0.0 1.4 1 1 0 1 1 1 0 SecA DEAD-like domain Acid_phosphat_B PF03767.9 gi|327310483|ref|YP_004337380.1| - 2.5e-07 30.3 0.0 3.4e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) HAD_2 PF13419.1 gi|327310483|ref|YP_004337380.1| - 0.00019 21.7 0.6 0.14 12.3 0.0 2.5 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|327310483|ref|YP_004337380.1| - 0.019 14.8 0.0 0.19 11.6 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|327310483|ref|YP_004337380.1| - 0.044 13.3 0.0 0.086 12.3 0.0 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|327310483|ref|YP_004337380.1| - 0.11 12.6 0.0 0.28 11.3 0.0 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Abhydrolase_6 PF12697.2 gi|327310484|ref|YP_004337381.1| - 0.0031 17.4 1.4 0.0036 17.2 1.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family UPF0126 PF03458.8 gi|327310484|ref|YP_004337381.1| - 0.35 10.5 7.5 0.08 12.5 1.6 2.2 1 1 1 2 2 2 0 UPF0126 domain T2SE PF00437.15 gi|327310486|ref|YP_004337383.1| - 3.2e-37 127.9 0.0 4.7e-37 127.3 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|327310486|ref|YP_004337383.1| - 3.7e-05 23.1 0.0 8.1e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|327310486|ref|YP_004337383.1| - 0.00074 19.2 0.0 0.026 14.2 0.0 3.0 3 0 0 3 3 3 1 Part of AAA domain AAA_28 PF13521.1 gi|327310486|ref|YP_004337383.1| - 0.00095 19.1 0.6 0.0062 16.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|327310486|ref|YP_004337383.1| - 0.0016 18.7 0.0 0.0027 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|327310486|ref|YP_004337383.1| - 0.0024 17.8 0.0 0.0046 16.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|327310486|ref|YP_004337383.1| - 0.0025 18.1 0.0 0.0066 16.7 0.0 1.6 2 0 0 2 2 1 1 ABC transporter FtsK_SpoIIIE PF01580.13 gi|327310486|ref|YP_004337383.1| - 0.0026 17.2 0.0 0.0056 16.1 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|327310486|ref|YP_004337383.1| - 0.003 17.7 0.0 0.0069 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|327310486|ref|YP_004337383.1| - 0.0047 16.9 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|327310486|ref|YP_004337383.1| - 0.0071 16.6 0.0 0.019 15.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|327310486|ref|YP_004337383.1| - 0.0073 15.7 0.1 0.013 14.9 0.1 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|327310486|ref|YP_004337383.1| - 0.015 15.7 0.0 0.036 14.5 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_10 PF12846.2 gi|327310486|ref|YP_004337383.1| - 0.017 14.5 0.4 0.052 12.9 0.1 1.8 2 0 0 2 2 2 0 AAA-like domain MobB PF03205.9 gi|327310486|ref|YP_004337383.1| - 0.018 14.7 0.1 0.034 13.8 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|327310486|ref|YP_004337383.1| - 0.021 14.3 0.1 0.041 13.3 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.1 gi|327310486|ref|YP_004337383.1| - 0.025 15.3 0.1 0.091 13.5 0.0 2.0 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|327310486|ref|YP_004337383.1| - 0.034 14.1 0.1 0.083 12.8 0.0 1.6 2 0 0 2 2 1 0 AAA ATPase domain Pox_A32 PF04665.7 gi|327310486|ref|YP_004337383.1| - 0.035 13.3 0.2 0.06 12.6 0.1 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein TrwB_AAD_bind PF10412.4 gi|327310486|ref|YP_004337383.1| - 0.038 12.6 0.1 0.058 12.0 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF258 PF03193.11 gi|327310486|ref|YP_004337383.1| - 0.039 13.1 0.0 0.063 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|327310486|ref|YP_004337383.1| - 0.053 13.1 0.1 0.09 12.4 0.1 1.3 1 0 0 1 1 1 0 NACHT domain Dynamin_N PF00350.18 gi|327310486|ref|YP_004337383.1| - 0.059 13.1 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Dynamin family Mg_chelatase PF01078.16 gi|327310486|ref|YP_004337383.1| - 0.063 12.4 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|327310486|ref|YP_004337383.1| - 0.16 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Septin PF00735.13 gi|327310486|ref|YP_004337383.1| - 0.16 10.9 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Septin AvrPto PF11592.3 gi|327310487|ref|YP_004337384.1| - 0.027 14.2 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 Central core of the bacterial effector protein AvrPto ETF PF01012.16 gi|327310488|ref|YP_004337385.1| - 1.4e-30 106.1 0.0 1.9e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Usp PF00582.21 gi|327310488|ref|YP_004337385.1| - 0.03 14.5 0.1 0.21 11.7 0.0 2.1 2 0 0 2 2 2 0 Universal stress protein family ETF PF01012.16 gi|327310489|ref|YP_004337386.1| - 1.3e-44 151.8 1.2 3.7e-44 150.3 0.2 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|327310489|ref|YP_004337386.1| - 5.2e-35 118.9 0.4 9.8e-35 118.0 0.3 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.17 gi|327310489|ref|YP_004337386.1| - 0.025 14.3 1.5 0.3 10.8 0.6 2.7 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Thymidylate_kin PF02223.12 gi|327310490|ref|YP_004337387.1| - 1.1e-46 158.5 0.0 1.3e-46 158.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|327310490|ref|YP_004337387.1| - 1.8e-07 31.5 0.0 8.9e-07 29.2 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|327310490|ref|YP_004337387.1| - 0.00019 21.4 0.0 0.00027 20.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|327310490|ref|YP_004337387.1| - 0.00046 20.9 0.1 0.0011 19.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|327310490|ref|YP_004337387.1| - 0.00049 20.0 0.0 0.0028 17.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327310490|ref|YP_004337387.1| - 0.017 15.1 0.2 0.14 12.1 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain SKI PF01202.17 gi|327310490|ref|YP_004337387.1| - 0.041 13.7 0.1 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 Shikimate kinase AAA_22 PF13401.1 gi|327310490|ref|YP_004337387.1| - 0.099 12.7 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain GATase PF00117.23 gi|327310491|ref|YP_004337388.1| - 8.7e-25 87.2 0.0 1.1e-24 86.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|327310491|ref|YP_004337388.1| - 0.00015 21.4 0.0 0.00033 20.2 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|327310491|ref|YP_004337388.1| - 0.00026 20.4 0.0 0.055 12.9 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 SNO PF01174.14 gi|327310491|ref|YP_004337388.1| - 0.0021 17.6 0.0 0.0096 15.5 0.0 1.8 2 0 0 2 2 2 1 SNO glutamine amidotransferase family HisG PF01634.13 gi|327310492|ref|YP_004337389.1| - 1.2e-44 151.7 0.0 1.8e-44 151.2 0.0 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|327310492|ref|YP_004337389.1| - 1.5e-19 69.7 0.1 2.8e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain CbiX PF01903.12 gi|327310492|ref|YP_004337389.1| - 0.027 14.5 0.1 0.75 9.9 0.0 2.9 2 1 1 3 3 3 0 CbiX DUF2795 PF11387.3 gi|327310492|ref|YP_004337389.1| - 0.072 12.9 0.1 3.6 7.5 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) Aminotran_1_2 PF00155.16 gi|327310493|ref|YP_004337390.1| - 9.9e-33 113.5 0.0 1.2e-32 113.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|327310493|ref|YP_004337390.1| - 0.0035 16.0 0.0 0.0049 15.5 0.0 1.1 1 0 0 1 1 1 1 Allinase PaREP1 PF05942.6 gi|327310494|ref|YP_004337391.1| - 7.4e-23 80.6 9.0 9.9e-23 80.2 6.2 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|327310494|ref|YP_004337391.1| - 0.0096 15.8 2.6 0.016 15.0 1.8 1.4 1 0 0 1 1 1 1 HEPN domain DNA_pol_B_thumb PF14791.1 gi|327310494|ref|YP_004337391.1| - 0.083 12.5 0.2 0.7 9.6 0.0 2.1 2 0 0 2 2 2 0 DNA polymerase beta thumb DUF1488 PF07369.6 gi|327310494|ref|YP_004337391.1| - 0.12 12.2 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1488) RyR PF02026.11 gi|327310494|ref|YP_004337391.1| - 0.15 12.0 0.6 0.37 10.8 0.4 1.7 1 1 0 1 1 1 0 RyR domain HisKA_3 PF07730.8 gi|327310494|ref|YP_004337391.1| - 7.4 7.0 8.6 14 6.1 0.1 2.9 4 0 0 4 4 4 0 Histidine kinase PRA-CH PF01502.13 gi|327310495|ref|YP_004337392.1| - 4.6e-32 109.4 0.1 6.3e-32 109.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.12 gi|327310496|ref|YP_004337393.1| - 5.1e-15 55.5 0.0 5.7e-15 55.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|327310496|ref|YP_004337393.1| - 0.0012 18.7 0.2 0.0019 18.1 0.2 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain SpoVS PF04232.7 gi|327310496|ref|YP_004337393.1| - 0.098 12.2 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Stage V sporulation protein S (SpoVS) Histidinol_dh PF00815.15 gi|327310497|ref|YP_004337394.1| - 1.8e-62 211.3 0.0 2.5e-62 210.8 0.0 1.2 1 0 0 1 1 1 1 Histidinol dehydrogenase VSP PF03302.8 gi|327310498|ref|YP_004337395.1| - 0.87 8.1 6.8 0.043 12.4 0.9 1.5 2 0 0 2 2 2 0 Giardia variant-specific surface protein DUF2818 PF10993.3 gi|327310501|ref|YP_004337398.1| - 0.25 11.8 2.4 0.76 10.3 1.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2818) MAF_flag10 PF01973.13 gi|327310503|ref|YP_004337400.1| - 4.2e-14 52.4 0.0 5.9e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Fer4_2 PF12797.2 gi|327310505|ref|YP_004337402.1| - 5.5e-08 32.2 12.8 0.00012 21.8 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|327310505|ref|YP_004337402.1| - 2.2e-07 30.6 8.1 2.8e-07 30.3 5.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327310505|ref|YP_004337402.1| - 2.4e-07 31.0 6.6 0.00064 20.0 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327310505|ref|YP_004337402.1| - 4.4e-06 26.4 25.9 0.00074 19.2 11.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|327310505|ref|YP_004337402.1| - 0.00013 21.3 2.7 0.00013 21.3 1.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|327310505|ref|YP_004337402.1| - 0.00031 20.9 15.3 0.016 15.4 11.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327310505|ref|YP_004337402.1| - 0.0011 18.7 15.1 0.0019 17.9 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|327310505|ref|YP_004337402.1| - 0.0022 18.3 13.2 0.016 15.5 1.3 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|327310505|ref|YP_004337402.1| - 0.0053 16.7 3.2 0.0053 16.7 2.2 2.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|327310505|ref|YP_004337402.1| - 0.007 16.6 3.3 0.007 16.6 2.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|327310505|ref|YP_004337402.1| - 0.071 13.6 4.0 0.071 13.6 2.7 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|327310505|ref|YP_004337402.1| - 0.12 12.8 13.0 0.36 11.3 2.4 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327310505|ref|YP_004337402.1| - 0.26 11.1 14.8 1.2 9.0 10.4 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327310505|ref|YP_004337402.1| - 3 8.6 15.8 0.68 10.7 1.8 2.6 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|327310505|ref|YP_004337402.1| - 3.2 7.4 14.5 0.31 10.6 3.3 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DAO PF01266.19 gi|327310506|ref|YP_004337403.1| - 8.6e-17 61.0 1.8 5.2e-09 35.4 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|327310506|ref|YP_004337403.1| - 2.2e-12 46.5 0.9 5.8e-10 38.6 0.1 2.2 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.14 gi|327310506|ref|YP_004337403.1| - 2.4e-10 40.0 0.3 1.3e-06 27.7 0.1 2.7 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|327310506|ref|YP_004337403.1| - 1.2e-09 37.5 0.7 6e-09 35.2 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|327310506|ref|YP_004337403.1| - 1.8e-09 37.5 0.0 4.5e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|327310506|ref|YP_004337403.1| - 2e-09 37.0 0.0 2.9e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|327310506|ref|YP_004337403.1| - 6e-09 34.8 0.6 1.3e-08 33.7 0.3 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|327310506|ref|YP_004337403.1| - 1.1e-08 35.3 0.1 3.2e-08 33.9 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|327310506|ref|YP_004337403.1| - 3.2e-08 33.6 0.0 4.7e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|327310506|ref|YP_004337403.1| - 6.3e-07 28.3 1.1 0.0015 17.2 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|327310506|ref|YP_004337403.1| - 1.5e-06 27.3 0.3 5.3e-06 25.5 0.2 1.8 1 1 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.17 gi|327310506|ref|YP_004337403.1| - 1.3e-05 24.2 0.5 2e-05 23.6 0.4 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|327310506|ref|YP_004337403.1| - 9e-05 22.8 0.1 0.0009 19.6 0.0 2.6 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|327310506|ref|YP_004337403.1| - 0.0002 20.5 0.0 0.00037 19.6 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|327310506|ref|YP_004337403.1| - 0.0028 17.4 0.2 0.0072 16.1 0.1 1.9 1 1 0 1 1 1 1 FAD-NAD(P)-binding GDI PF00996.13 gi|327310506|ref|YP_004337403.1| - 0.0059 14.9 0.0 1.7 6.8 0.0 2.1 2 0 0 2 2 2 2 GDP dissociation inhibitor NAD_binding_7 PF13241.1 gi|327310506|ref|YP_004337403.1| - 0.013 15.6 0.0 0.037 14.2 0.0 1.8 2 0 0 2 2 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|327310506|ref|YP_004337403.1| - 0.014 15.5 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|327310506|ref|YP_004337403.1| - 0.04 13.5 1.5 0.054 13.1 0.2 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|327310506|ref|YP_004337403.1| - 0.055 13.2 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 ThiF family ApbA PF02558.11 gi|327310506|ref|YP_004337403.1| - 0.059 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA MoaE PF02391.12 gi|327310507|ref|YP_004337404.1| - 9.1e-22 77.0 0.4 1.4e-21 76.5 0.3 1.2 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|327310507|ref|YP_004337404.1| - 2.6e-17 62.9 0.0 5.7e-17 61.9 0.0 1.6 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|327310507|ref|YP_004337404.1| - 0.062 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Mut7-C ubiquitin AAA_14 PF13173.1 gi|327310508|ref|YP_004337405.1| - 2.5e-23 82.3 0.0 4.2e-23 81.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|327310508|ref|YP_004337405.1| - 3.5e-07 30.3 0.1 7e-07 29.3 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|327310508|ref|YP_004337405.1| - 0.0014 18.3 0.0 0.003 17.2 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase MobB PF03205.9 gi|327310508|ref|YP_004337405.1| - 0.0046 16.6 0.0 0.062 12.9 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|327310508|ref|YP_004337405.1| - 0.0073 15.7 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|327310508|ref|YP_004337405.1| - 0.04 13.3 0.0 0.23 10.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|327310508|ref|YP_004337405.1| - 0.043 13.7 0.0 0.2 11.6 0.0 2.2 1 1 0 1 1 1 0 AAA ATPase domain HTH_24 PF13412.1 gi|327310508|ref|YP_004337405.1| - 0.059 12.7 0.2 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding AAA_10 PF12846.2 gi|327310508|ref|YP_004337405.1| - 0.19 11.1 0.0 1.3 8.4 0.0 2.2 2 1 0 2 2 2 0 AAA-like domain KaiC PF06745.8 gi|327310510|ref|YP_004337407.1| - 2.9e-65 219.5 0.1 3.4e-65 219.3 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|327310510|ref|YP_004337407.1| - 1.1e-07 31.4 0.0 1.5e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|327310510|ref|YP_004337407.1| - 0.00025 19.5 1.1 0.0035 15.7 0.8 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|327310510|ref|YP_004337407.1| - 0.00081 18.5 0.0 0.0013 17.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.6 gi|327310510|ref|YP_004337407.1| - 0.002 17.0 0.1 0.003 16.5 0.1 1.2 1 0 0 1 1 1 1 Rad51 ATP-synt_ab PF00006.20 gi|327310510|ref|YP_004337407.1| - 0.0082 15.6 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ResIII PF04851.10 gi|327310510|ref|YP_004337407.1| - 0.011 15.6 0.1 0.02 14.7 0.1 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|327310510|ref|YP_004337407.1| - 0.024 13.6 0.0 0.031 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DEAD PF00270.24 gi|327310510|ref|YP_004337407.1| - 0.028 13.9 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase PAXNEB PF05625.6 gi|327310510|ref|YP_004337407.1| - 0.029 13.1 0.6 0.049 12.4 0.4 1.3 1 0 0 1 1 1 0 PAXNEB protein IstB_IS21 PF01695.12 gi|327310510|ref|YP_004337407.1| - 0.042 13.2 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.1 gi|327310510|ref|YP_004337407.1| - 0.071 13.0 1.7 0.62 10.0 1.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain Zot PF05707.7 gi|327310510|ref|YP_004337407.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|327310510|ref|YP_004337407.1| - 0.17 11.9 0.2 0.32 11.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain PCNA_N PF00705.13 gi|327310511|ref|YP_004337408.1| - 5.3e-12 45.3 0.0 1.5e-11 43.8 0.0 1.7 1 1 1 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|327310511|ref|YP_004337408.1| - 5.8e-09 35.9 0.1 9e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|327310511|ref|YP_004337408.1| - 0.011 14.8 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 0 Rad9 DUF364 PF04016.7 gi|327310513|ref|YP_004337410.1| - 0.0023 17.2 0.0 0.0033 16.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) PS_pyruv_trans PF04230.8 gi|327310513|ref|YP_004337410.1| - 0.012 15.3 0.0 0.071 12.8 0.0 1.9 1 1 1 2 2 2 0 Polysaccharide pyruvyl transferase FAD_binding_2 PF00890.19 gi|327310514|ref|YP_004337411.1| - 3.3e-113 378.6 0.1 4.1e-113 378.3 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|327310514|ref|YP_004337411.1| - 2.3e-41 140.6 0.0 3.9e-41 139.9 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|327310514|ref|YP_004337411.1| - 2.3e-08 34.1 0.0 1.6e-06 28.1 0.0 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|327310514|ref|YP_004337411.1| - 0.00011 21.2 0.0 0.0012 17.7 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|327310514|ref|YP_004337411.1| - 0.014 14.2 0.3 0.72 8.6 0.1 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A Thi4 PF01946.12 gi|327310514|ref|YP_004337411.1| - 0.091 11.8 0.1 1.8 7.6 0.0 2.7 3 0 0 3 3 3 0 Thi4 family FAD_oxidored PF12831.2 gi|327310514|ref|YP_004337411.1| - 0.1 11.6 0.2 0.8 8.7 0.1 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Fer2_3 PF13085.1 gi|327310515|ref|YP_004337412.1| - 1.3e-34 118.2 0.1 1.3e-34 118.2 0.1 1.5 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|327310515|ref|YP_004337412.1| - 9.4e-12 44.7 4.2 1e-11 44.6 1.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327310515|ref|YP_004337412.1| - 2.2e-08 34.3 0.9 2.2e-08 34.3 0.6 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|327310515|ref|YP_004337412.1| - 4e-08 33.4 2.2 9e-08 32.2 0.2 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327310515|ref|YP_004337412.1| - 9.3e-08 31.7 2.8 9.3e-08 31.7 1.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327310515|ref|YP_004337412.1| - 1.5e-06 28.5 5.0 0.024 15.0 2.5 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|327310515|ref|YP_004337412.1| - 3.1e-05 23.3 3.3 3.1e-05 23.3 2.3 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2 PF00111.22 gi|327310515|ref|YP_004337412.1| - 4.3e-05 23.1 0.5 4.3e-05 23.1 0.3 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_7 PF12838.2 gi|327310515|ref|YP_004337412.1| - 5e-05 23.6 5.6 5e-05 23.6 3.9 2.7 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327310515|ref|YP_004337412.1| - 0.0005 19.8 1.4 0.0005 19.8 1.0 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|327310515|ref|YP_004337412.1| - 0.00052 20.7 2.4 0.00052 20.7 1.6 2.8 3 1 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|327310515|ref|YP_004337412.1| - 0.0035 17.1 3.4 0.0035 17.1 2.4 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|327310515|ref|YP_004337412.1| - 0.004 17.3 0.9 0.004 17.3 0.6 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|327310515|ref|YP_004337412.1| - 0.014 15.2 0.6 0.014 15.2 0.4 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|327310515|ref|YP_004337412.1| - 0.036 13.7 0.4 1.7 8.3 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TF_Zn_Ribbon PF08271.7 gi|327310515|ref|YP_004337412.1| - 8.2 5.8 7.0 13 5.2 0.4 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding Sdh_cyt PF01127.17 gi|327310516|ref|YP_004337413.1| - 6.5e-11 42.1 3.2 1e-10 41.5 2.2 1.3 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4282 PF14110.1 gi|327310516|ref|YP_004337413.1| - 7.4 6.8 14.0 12 6.1 4.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) Sdh_cyt PF01127.17 gi|327310517|ref|YP_004337414.1| - 0.00014 21.6 2.8 0.00026 20.8 2.0 1.5 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF998 PF06197.8 gi|327310517|ref|YP_004337414.1| - 0.16 11.2 5.6 0.25 10.6 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF998) DUF3976 PF13121.1 gi|327310517|ref|YP_004337414.1| - 0.7 9.7 0.1 0.7 9.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3976) Phtf-FEM1B_bdg PF12129.3 gi|327310517|ref|YP_004337414.1| - 1.3 8.3 6.8 0.2 10.9 1.7 1.7 2 0 0 2 2 2 0 Male germ-cell putative homeodomain transcription factor NUDIX PF00293.23 gi|327310518|ref|YP_004337415.1| - 4.7e-13 48.9 0.2 5.9e-13 48.6 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain PTH2 PF01981.11 gi|327310519|ref|YP_004337416.1| - 2.2e-42 143.3 0.0 2.5e-42 143.2 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 tRNA-synt_1 PF00133.17 gi|327310520|ref|YP_004337417.1| - 1.5e-166 554.9 0.2 1.9e-166 554.6 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|327310520|ref|YP_004337417.1| - 2.4e-29 102.0 0.2 5.9e-29 100.8 0.1 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|327310520|ref|YP_004337417.1| - 2.2e-27 95.7 1.0 7.2e-10 38.0 0.2 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|327310520|ref|YP_004337417.1| - 1.4e-08 34.2 0.0 3.1e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|327310520|ref|YP_004337417.1| - 4.4e-08 32.6 0.0 9.2e-06 24.9 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|327310520|ref|YP_004337417.1| - 4.3e-06 25.6 0.0 1.7e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) RHH_1 PF01402.16 gi|327310520|ref|YP_004337417.1| - 0.0062 16.3 1.3 0.028 14.3 0.1 2.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Phos_pyr_kin PF08543.7 gi|327310522|ref|YP_004337419.1| - 3.6e-91 304.7 0.6 4.6e-91 304.3 0.4 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|327310522|ref|YP_004337419.1| - 2.4e-64 215.8 0.0 4.2e-64 215.0 0.0 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|327310522|ref|YP_004337419.1| - 7.8e-13 48.2 0.3 1.2e-12 47.5 0.2 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|327310522|ref|YP_004337419.1| - 0.016 14.4 0.0 0.022 14.0 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate kinase HK PF02110.10 gi|327310522|ref|YP_004337419.1| - 0.062 12.4 0.2 0.12 11.4 0.2 1.5 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family Beta-Casp PF10996.3 gi|327310525|ref|YP_004337422.1| - 9.3e-21 74.0 0.0 2e-20 72.9 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|327310525|ref|YP_004337422.1| - 2.8e-19 69.5 2.1 1.1e-18 67.6 1.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|327310525|ref|YP_004337422.1| - 4e-13 48.9 0.0 8.3e-13 47.9 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|327310525|ref|YP_004337422.1| - 5.7e-13 48.8 0.1 4.7e-12 45.8 0.0 2.2 2 1 1 3 3 3 1 Beta-lactamase superfamily domain KOW PF00467.24 gi|327310526|ref|YP_004337423.1| - 3e-07 29.8 5.3 3e-07 29.8 3.7 1.9 2 0 0 2 2 2 1 KOW motif KH_5 PF13184.1 gi|327310527|ref|YP_004337424.1| - 0.00025 20.7 1.6 0.00099 18.8 0.0 2.2 2 0 0 2 2 2 1 NusA-like KH domain tRNA-synt_2 PF00152.15 gi|327310528|ref|YP_004337425.1| - 5.2e-84 281.8 0.0 7.5e-84 281.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|327310528|ref|YP_004337425.1| - 6.6e-11 41.9 1.0 1.1e-10 41.1 0.7 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|327310528|ref|YP_004337425.1| - 0.00063 19.0 0.1 0.21 10.7 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SseB_C PF14581.1 gi|327310528|ref|YP_004337425.1| - 0.024 14.4 0.4 0.08 12.8 0.0 2.0 2 0 0 2 2 2 0 SseB protein C-terminal domain RICTOR_N PF14664.1 gi|327310528|ref|YP_004337425.1| - 0.032 12.8 0.0 0.051 12.1 0.0 1.3 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR, N-term ERF PF04404.7 gi|327310528|ref|YP_004337425.1| - 0.18 11.3 0.0 0.47 9.9 0.0 1.6 2 0 0 2 2 2 0 ERF superfamily PCMT PF01135.14 gi|327310529|ref|YP_004337426.1| - 5.9e-61 205.6 0.0 7e-61 205.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|327310529|ref|YP_004337426.1| - 7e-07 28.4 0.0 9.4e-07 28.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_31 PF13847.1 gi|327310529|ref|YP_004337426.1| - 2.8e-06 26.9 0.0 3.7e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310529|ref|YP_004337426.1| - 3.1e-06 27.7 0.0 5.1e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|327310529|ref|YP_004337426.1| - 1.7e-05 24.8 0.1 3.1e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|327310529|ref|YP_004337426.1| - 2.4e-05 23.9 0.0 3.2e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.1 gi|327310529|ref|YP_004337426.1| - 0.00018 22.2 0.0 0.00029 21.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|327310529|ref|YP_004337426.1| - 0.00024 20.5 0.0 0.00043 19.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|327310529|ref|YP_004337426.1| - 0.012 14.7 0.0 0.015 14.3 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|327310529|ref|YP_004337426.1| - 0.013 14.6 0.0 0.017 14.2 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|327310529|ref|YP_004337426.1| - 0.019 14.6 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|327310529|ref|YP_004337426.1| - 0.06 12.3 0.0 0.09 11.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Ufm1 PF03671.9 gi|327310529|ref|YP_004337426.1| - 0.074 12.8 0.0 0.5 10.1 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin fold modifier 1 protein NUDIX PF00293.23 gi|327310530|ref|YP_004337427.1| - 4.5e-14 52.2 0.2 5.2e-14 52.0 0.1 1.0 1 0 0 1 1 1 1 NUDIX domain DUF2837 PF10997.3 gi|327310531|ref|YP_004337428.1| - 0.079 12.0 0.2 0.15 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2837) Usp PF00582.21 gi|327310532|ref|YP_004337429.1| - 2e-34 118.7 3.3 2.3e-34 118.5 2.3 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|327310532|ref|YP_004337429.1| - 0.021 14.5 0.7 0.13 11.9 0.5 2.0 1 1 0 1 1 1 0 Electron transfer flavoprotein domain Oxidored_nitro PF00148.14 gi|327310532|ref|YP_004337429.1| - 0.031 12.9 0.0 0.54 8.8 0.0 1.9 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase PGM_PMM_I PF02878.11 gi|327310532|ref|YP_004337429.1| - 0.04 13.4 0.1 0.068 12.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP_endonuc_2 PF01261.19 gi|327310532|ref|YP_004337429.1| - 0.063 12.5 0.0 0.15 11.3 0.0 1.6 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel DUF4636 PF15468.1 gi|327310535|ref|YP_004337432.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4636) CbiA PF01656.18 gi|327310536|ref|YP_004337433.1| - 1.6e-10 40.6 0.0 2.8e-10 39.9 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|327310536|ref|YP_004337433.1| - 0.00034 20.5 0.0 0.0026 17.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|327310536|ref|YP_004337433.1| - 0.0036 16.9 0.1 0.027 14.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|327310536|ref|YP_004337433.1| - 0.0043 16.1 0.1 0.0093 15.0 0.0 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase DUF1554 PF07588.6 gi|327310536|ref|YP_004337433.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1554) T2SE PF00437.15 gi|327310537|ref|YP_004337434.1| - 1.8e-13 50.0 0.1 3e-13 49.3 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_28 PF13521.1 gi|327310537|ref|YP_004337434.1| - 0.06 13.3 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain HTH_24 PF13412.1 gi|327310539|ref|YP_004337436.1| - 0.05 12.9 0.4 0.42 10.0 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Ribosomal_S13_N PF08069.7 gi|327310539|ref|YP_004337436.1| - 0.079 12.8 0.0 0.32 10.8 0.0 1.9 2 0 0 2 2 2 0 Ribosomal S13/S15 N-terminal domain CTV_P6 PF06706.6 gi|327310541|ref|YP_004337438.1| - 0.068 12.6 0.9 0.2 11.1 0.6 1.9 1 0 0 1 1 1 0 Citrus tristeza virus 6-kDa protein DUF1628 PF07790.6 gi|327310542|ref|YP_004337439.1| - 0.0061 17.2 0.6 0.011 16.5 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF4330 PF14221.1 gi|327310542|ref|YP_004337439.1| - 0.012 15.5 2.5 0.016 15.0 1.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Bundlin PF05307.6 gi|327310542|ref|YP_004337439.1| - 0.052 13.4 0.7 0.052 13.4 0.5 2.1 2 0 0 2 2 2 0 Bundlin MacB_PCD PF12704.2 gi|327310542|ref|YP_004337439.1| - 0.06 12.9 3.8 0.091 12.3 2.6 1.3 1 1 0 1 1 1 0 MacB-like periplasmic core domain SurA_N_3 PF13624.1 gi|327310542|ref|YP_004337439.1| - 0.11 12.4 0.5 0.14 12.1 0.3 1.1 1 0 0 1 1 1 0 SurA N-terminal domain DUF4307 PF14155.1 gi|327310542|ref|YP_004337439.1| - 0.18 11.5 3.8 0.37 10.6 2.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF3993 PF13158.1 gi|327310542|ref|YP_004337439.1| - 0.32 10.8 1.9 2.8 7.7 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3993) DUF192 PF02643.10 gi|327310543|ref|YP_004337440.1| - 4.5e-05 23.0 0.0 5.1e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 PQQ_3 PF13570.1 gi|327310545|ref|YP_004337442.1| - 0.0074 16.5 0.9 0.11 12.8 0.8 2.2 2 0 0 2 2 2 1 PQQ-like domain UPRTase PF14681.1 gi|327310551|ref|YP_004337448.1| - 9.1e-57 191.6 0.0 1e-56 191.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|327310551|ref|YP_004337448.1| - 6.7e-06 25.8 0.9 1.6e-05 24.5 0.6 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain DUF3646 PF12362.3 gi|327310551|ref|YP_004337448.1| - 0.02 14.8 0.2 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 DNA polymerase III gamma and tau subunits C terminal Peptidase_M50 PF02163.17 gi|327310552|ref|YP_004337449.1| - 7.5e-15 54.3 10.6 7.5e-15 54.3 7.3 2.3 2 1 0 2 2 2 1 Peptidase family M50 E1-E2_ATPase PF00122.15 gi|327310552|ref|YP_004337449.1| - 2.7 6.9 9.1 0.86 8.5 1.3 2.2 2 0 0 2 2 2 0 E1-E2 ATPase Peptidase_M1 PF01433.15 gi|327310553|ref|YP_004337450.1| - 6.6e-63 213.1 0.0 1.5e-62 211.9 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M1 HEAT_2 PF13646.1 gi|327310553|ref|YP_004337450.1| - 4.4e-40 135.8 34.9 1.4e-13 50.9 2.1 4.3 1 1 4 5 5 5 5 HEAT repeats HEAT_PBS PF03130.11 gi|327310553|ref|YP_004337450.1| - 3.3e-15 54.9 25.4 0.0039 17.5 0.1 7.0 6 0 0 6 6 6 5 PBS lyase HEAT-like repeat Peptidase_MA_2 PF13485.1 gi|327310553|ref|YP_004337450.1| - 1e-11 44.9 1.2 2.8e-11 43.5 0.3 2.1 2 0 0 2 2 2 1 Peptidase MA superfamily HEAT PF02985.17 gi|327310553|ref|YP_004337450.1| - 1.3e-09 37.3 6.0 0.17 12.0 0.2 6.3 6 0 0 6 6 6 3 HEAT repeat HEAT_EZ PF13513.1 gi|327310553|ref|YP_004337450.1| - 1.6e-05 25.2 13.2 0.15 12.6 0.1 5.7 4 1 2 6 6 6 2 HEAT-like repeat Adaptin_N PF01602.15 gi|327310553|ref|YP_004337450.1| - 0.15 10.3 0.0 0.43 8.8 0.0 1.7 1 0 0 1 1 1 0 Adaptin N terminal region RRF PF01765.14 gi|327310553|ref|YP_004337450.1| - 0.27 10.7 1.0 0.59 9.5 0.7 1.5 1 0 0 1 1 1 0 Ribosome recycling factor PhoH PF02562.11 gi|327310554|ref|YP_004337451.1| - 9.4e-49 165.4 0.0 1.2e-48 165.1 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_5 PF13184.1 gi|327310554|ref|YP_004337451.1| - 6.8e-09 35.3 0.0 3e-07 30.1 0.0 2.4 2 0 0 2 2 2 1 NusA-like KH domain KH_2 PF07650.12 gi|327310554|ref|YP_004337451.1| - 8.4e-08 31.6 0.4 4.1e-06 26.2 0.1 2.6 2 1 1 3 3 3 1 KH domain KH_1 PF00013.24 gi|327310554|ref|YP_004337451.1| - 0.00025 20.6 0.0 0.00098 18.7 0.0 1.9 2 0 0 2 2 2 1 KH domain IstB_IS21 PF01695.12 gi|327310554|ref|YP_004337451.1| - 0.00027 20.3 0.0 0.00063 19.1 0.0 1.6 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.1 gi|327310554|ref|YP_004337451.1| - 0.0027 17.3 0.0 0.025 14.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|327310554|ref|YP_004337451.1| - 0.0028 17.8 0.0 0.0058 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain KH_3 PF13014.1 gi|327310554|ref|YP_004337451.1| - 0.021 14.4 0.0 0.066 12.8 0.0 1.8 1 0 0 1 1 1 0 KH domain ABC_tran PF00005.22 gi|327310554|ref|YP_004337451.1| - 0.027 14.7 0.3 0.058 13.7 0.2 1.6 1 1 0 1 1 1 0 ABC transporter AAA_16 PF13191.1 gi|327310554|ref|YP_004337451.1| - 0.039 13.9 0.2 0.61 10.0 0.2 2.2 1 1 0 1 1 1 0 AAA ATPase domain KaiC PF06745.8 gi|327310554|ref|YP_004337451.1| - 0.077 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 KaiC Acylphosphatase PF00708.13 gi|327310555|ref|YP_004337452.1| - 2.8e-17 62.6 0.0 3e-17 62.4 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase BLUF PF04940.7 gi|327310555|ref|YP_004337452.1| - 0.046 13.4 0.0 0.054 13.2 0.0 1.1 1 0 0 1 1 1 0 Sensors of blue-light using FAD CysG_dimeriser PF10414.4 gi|327310555|ref|YP_004337452.1| - 0.15 11.5 0.2 0.23 10.9 0.2 1.3 1 0 0 1 1 1 0 Sirohaem synthase dimerisation region Peptidase_A24 PF01478.13 gi|327310556|ref|YP_004337453.1| - 2.4e-06 27.6 8.2 2.4e-06 27.6 5.7 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family DUF3487 PF11990.3 gi|327310556|ref|YP_004337453.1| - 9.7 5.6 6.8 2.8 7.3 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3487) bact-PGI_C PF10432.4 gi|327310557|ref|YP_004337454.1| - 5e-22 78.2 0.0 1.2e-21 77.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|327310557|ref|YP_004337454.1| - 7.6e-08 32.0 0.0 2.2e-07 30.5 0.0 1.7 1 1 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|327310557|ref|YP_004337454.1| - 0.00015 21.5 0.0 0.00036 20.2 0.0 1.6 2 0 0 2 2 2 1 SIS domain TPP_enzyme_N PF02776.13 gi|327310557|ref|YP_004337454.1| - 0.073 12.5 0.2 0.15 11.5 0.2 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ResIII PF04851.10 gi|327310558|ref|YP_004337455.1| - 6.8e-18 65.1 0.0 2.3e-16 60.1 0.0 2.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|327310558|ref|YP_004337455.1| - 4.6e-14 52.0 0.1 1e-13 50.9 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|327310558|ref|YP_004337455.1| - 7.7e-10 38.5 0.1 5.5e-08 32.4 0.0 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|327310558|ref|YP_004337455.1| - 3.6e-05 22.7 0.0 0.0002 20.2 0.0 2.1 1 1 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|327310558|ref|YP_004337455.1| - 0.01 15.9 0.0 0.04 14.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|327310558|ref|YP_004337455.1| - 0.053 12.4 0.0 0.13 11.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UPF0126 PF03458.8 gi|327310559|ref|YP_004337456.1| - 0.032 13.8 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 UPF0126 domain Fer4_7 PF12838.2 gi|327310561|ref|YP_004337458.1| - 2.4e-14 53.4 20.9 2.1e-08 34.4 8.0 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327310561|ref|YP_004337458.1| - 3.7e-10 39.2 14.6 2.7e-09 36.4 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|327310561|ref|YP_004337458.1| - 6.4e-10 39.1 20.0 4.8e-06 26.7 7.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|327310561|ref|YP_004337458.1| - 6.9e-10 38.1 17.8 1.7e-09 36.8 2.2 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|327310561|ref|YP_004337458.1| - 3.1e-09 36.5 8.9 4.1e-09 36.1 6.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327310561|ref|YP_004337458.1| - 7.2e-09 35.3 7.3 7.2e-09 35.3 5.1 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327310561|ref|YP_004337458.1| - 1.3e-08 34.2 9.2 4.1e-07 29.5 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|327310561|ref|YP_004337458.1| - 7.4e-08 33.0 8.6 0.00022 21.8 1.3 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|327310561|ref|YP_004337458.1| - 8.5e-08 32.6 10.9 3.6e-07 30.6 7.6 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|327310561|ref|YP_004337458.1| - 1.9e-05 24.6 12.1 3.4e-05 23.8 0.9 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|327310561|ref|YP_004337458.1| - 3.4e-05 23.7 19.9 0.0023 17.8 7.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327310561|ref|YP_004337458.1| - 3.9e-05 23.9 3.6 0.0047 17.3 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327310561|ref|YP_004337458.1| - 0.00031 21.0 17.8 0.0042 17.5 4.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|327310561|ref|YP_004337458.1| - 0.0004 20.2 6.1 0.011 15.6 3.7 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327310561|ref|YP_004337458.1| - 0.0021 18.3 9.2 0.036 14.3 1.4 2.4 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|327310561|ref|YP_004337458.1| - 0.0086 16.4 5.6 0.0086 16.4 3.9 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain SIR2 PF02146.12 gi|327310562|ref|YP_004337459.1| - 1e-50 171.9 0.0 1.2e-50 171.6 0.0 1.1 1 0 0 1 1 1 1 Sir2 family zf-C2H2_3 PF13878.1 gi|327310562|ref|YP_004337459.1| - 0.067 12.7 0.3 0.067 12.7 0.2 1.8 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_4 PF13717.1 gi|327310562|ref|YP_004337459.1| - 0.068 12.8 0.2 0.13 11.9 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|327310562|ref|YP_004337459.1| - 0.11 12.0 0.2 0.22 11.1 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF309 PF03745.9 gi|327310563|ref|YP_004337460.1| - 4.6e-13 48.4 0.0 7.9e-13 47.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) HOOK PF05622.7 gi|327310564|ref|YP_004337461.1| - 0.044 11.6 0.3 0.058 11.2 0.2 1.1 1 0 0 1 1 1 0 HOOK protein FtsQ PF03799.10 gi|327310564|ref|YP_004337461.1| - 0.054 13.6 0.1 0.07 13.3 0.0 1.2 1 0 0 1 1 1 0 Cell division protein FtsQ BRE1 PF08647.6 gi|327310564|ref|YP_004337461.1| - 0.066 13.1 0.6 0.14 12.1 0.4 1.5 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase SNF2_assoc PF08455.5 gi|327310564|ref|YP_004337461.1| - 0.093 11.2 1.3 0.099 11.1 0.9 1.2 1 1 0 1 1 1 0 Bacterial SNF2 helicase associated PAPS_reduct PF01507.14 gi|327310568|ref|YP_004337465.1| - 2.8e-43 147.7 0.0 4.8e-43 146.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_10 PF13237.1 gi|327310568|ref|YP_004337465.1| - 4.8e-08 32.6 18.6 2.1e-06 27.4 6.7 2.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327310568|ref|YP_004337465.1| - 7.7e-08 32.6 8.5 1.8e-07 31.4 5.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327310568|ref|YP_004337465.1| - 2.1e-06 27.4 6.6 2.1e-06 27.4 4.6 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|327310568|ref|YP_004337465.1| - 3.7e-06 26.3 15.0 7.8e-06 25.2 1.5 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|327310568|ref|YP_004337465.1| - 9.1e-06 25.8 4.4 2.4e-05 24.4 3.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327310568|ref|YP_004337465.1| - 1.4e-05 24.6 2.3 1.4e-05 24.6 1.6 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|327310568|ref|YP_004337465.1| - 2.7e-05 23.8 12.2 0.00011 21.8 0.7 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|327310568|ref|YP_004337465.1| - 7.1e-05 22.7 2.2 0.025 14.6 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|327310568|ref|YP_004337465.1| - 0.0015 18.4 3.9 0.0033 17.2 2.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327310568|ref|YP_004337465.1| - 0.003 17.8 6.9 0.15 12.4 0.7 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327310568|ref|YP_004337465.1| - 0.0038 17.9 11.4 0.015 16.0 0.3 2.8 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|327310568|ref|YP_004337465.1| - 0.012 16.0 11.3 0.67 10.4 1.8 2.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|327310568|ref|YP_004337465.1| - 0.016 15.7 0.4 0.016 15.7 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|327310568|ref|YP_004337465.1| - 0.053 13.9 0.9 0.053 13.9 0.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|327310568|ref|YP_004337465.1| - 1.6 9.2 16.4 0.36 11.2 1.5 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain NTP_transferase PF00483.18 gi|327310569|ref|YP_004337466.1| - 1.2e-32 113.2 0.0 1.5e-32 112.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|327310569|ref|YP_004337466.1| - 8.3e-13 48.7 0.0 8.9e-13 48.6 0.0 1.2 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|327310569|ref|YP_004337466.1| - 0.0044 16.5 0.0 0.012 15.1 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase tRNA-synt_1c PF00749.16 gi|327310570|ref|YP_004337467.1| - 8.8e-73 244.6 0.0 1.5e-72 243.8 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|327310570|ref|YP_004337467.1| - 9e-23 80.8 0.0 1.9e-22 79.7 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF354 PF04007.7 gi|327310571|ref|YP_004337468.1| - 7.9e-50 169.6 0.0 1e-49 169.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) tRNA-synt_2 PF00152.15 gi|327310573|ref|YP_004337470.1| - 7.2e-82 274.8 0.0 1.2e-81 274.1 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|327310573|ref|YP_004337470.1| - 7.1e-13 48.2 0.0 1.8e-12 46.9 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|327310573|ref|YP_004337470.1| - 0.0077 15.4 0.9 0.12 11.5 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|327310573|ref|YP_004337470.1| - 0.031 13.8 0.0 3.3 7.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) Flp_Fap PF04964.9 gi|327310574|ref|YP_004337471.1| - 0.14 11.7 2.1 0.23 11.1 1.4 1.3 1 0 0 1 1 1 0 Flp/Fap pilin component Potass_KdpF PF09604.5 gi|327310574|ref|YP_004337471.1| - 1.1 9.1 3.6 2 8.3 2.5 1.4 1 0 0 1 1 1 0 F subunit of K+-transporting ATPase (Potass_KdpF) NAD_binding_2 PF03446.10 gi|327310575|ref|YP_004337472.1| - 5e-19 68.7 0.8 1.2e-18 67.4 0.6 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|327310575|ref|YP_004337472.1| - 1.9e-08 34.3 0.0 5.1e-08 33.0 0.0 1.7 1 1 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|327310575|ref|YP_004337472.1| - 2.7e-05 24.4 0.2 0.00014 22.2 0.0 2.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|327310575|ref|YP_004337472.1| - 3.9e-05 22.8 0.0 7.1e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|327310575|ref|YP_004337472.1| - 0.0017 18.0 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|327310575|ref|YP_004337472.1| - 0.0036 17.3 0.3 0.0079 16.2 0.2 1.7 1 1 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|327310575|ref|YP_004337472.1| - 0.004 17.2 0.1 0.0099 15.9 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|327310575|ref|YP_004337472.1| - 0.0079 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NmrA PF05368.8 gi|327310575|ref|YP_004337472.1| - 0.015 14.5 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family Pyr_redox_2 PF07992.9 gi|327310575|ref|YP_004337472.1| - 0.025 14.4 0.2 0.03 14.1 0.1 1.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|327310575|ref|YP_004337472.1| - 0.026 13.9 0.0 0.049 13.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA YceG PF02618.11 gi|327310575|ref|YP_004337472.1| - 0.11 11.5 0.0 0.18 10.8 0.0 1.3 1 0 0 1 1 1 0 YceG-like family AlaDh_PNT_C PF01262.16 gi|327310575|ref|YP_004337472.1| - 0.22 11.0 1.0 0.28 10.7 0.0 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Sua5_yciO_yrdC PF01300.13 gi|327310576|ref|YP_004337473.1| - 2.3e-60 202.8 0.0 3.2e-60 202.4 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|327310576|ref|YP_004337473.1| - 1e-29 103.1 0.0 1.7e-29 102.4 0.0 1.4 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Methyltransf_11 PF08241.7 gi|327310577|ref|YP_004337474.1| - 4e-06 27.2 0.0 7.1e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|327310577|ref|YP_004337474.1| - 0.00012 22.3 0.0 0.00026 21.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|327310577|ref|YP_004337474.1| - 0.0031 17.2 0.0 0.0072 16.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain DUF3565 PF12088.3 gi|327310577|ref|YP_004337474.1| - 0.0055 16.4 0.3 0.0055 16.4 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3565) CMAS PF02353.15 gi|327310577|ref|YP_004337474.1| - 0.022 13.8 0.0 0.075 12.0 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.1 gi|327310577|ref|YP_004337474.1| - 0.067 12.7 0.0 0.15 11.6 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain Pribosyltran_N PF13793.1 gi|327310578|ref|YP_004337475.1| - 5.9e-21 74.3 0.0 5.5e-19 68.0 0.0 2.5 2 1 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|327310578|ref|YP_004337475.1| - 7.3e-14 51.5 0.1 2e-13 50.1 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|327310578|ref|YP_004337475.1| - 1.5e-07 31.3 0.0 2.9e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.1 gi|327310578|ref|YP_004337475.1| - 0.0083 15.4 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|327310578|ref|YP_004337475.1| - 0.012 14.8 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Hist_deacetyl PF00850.14 gi|327310579|ref|YP_004337476.1| - 1.2e-69 234.9 0.0 1.5e-69 234.6 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain SbcD_C PF12320.3 gi|327310580|ref|YP_004337477.1| - 0.098 12.7 3.9 0.15 12.1 2.7 1.3 1 1 0 1 1 1 0 Type 5 capsule protein repressor C-terminal domain Transcrip_reg PF01709.15 gi|327310580|ref|YP_004337477.1| - 0.12 11.4 2.2 0.12 11.4 1.6 1.0 1 0 0 1 1 1 0 Transcriptional regulator DUF3134 PF11332.3 gi|327310580|ref|YP_004337477.1| - 1.7 8.7 8.4 0.21 11.7 3.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3134) Creatininase PF02633.9 gi|327310581|ref|YP_004337478.1| - 1.8e-39 135.2 0.0 2.1e-39 135.0 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase GGDN PF05165.7 gi|327310582|ref|YP_004337479.1| - 1.1e-28 99.9 0.0 7.2e-14 51.4 0.0 2.1 1 1 1 2 2 2 2 GGDN family RibD_C PF01872.12 gi|327310583|ref|YP_004337480.1| - 3.8e-52 176.8 0.0 4.2e-52 176.6 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DHBP_synthase PF00926.14 gi|327310584|ref|YP_004337481.1| - 3.2e-49 166.7 0.0 3.6e-49 166.6 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CxxCxxCC PF03692.10 gi|327310585|ref|YP_004337482.1| - 3.6e-18 65.8 0.9 5.5e-18 65.2 0.6 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain 2-Hacid_dh_C PF02826.14 gi|327310586|ref|YP_004337483.1| - 1.4e-62 210.0 0.0 2.3e-62 209.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|327310586|ref|YP_004337483.1| - 1.1e-32 112.2 0.0 1.3e-32 112.0 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|327310586|ref|YP_004337483.1| - 1.9e-07 31.0 0.0 6.4e-07 29.3 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|327310586|ref|YP_004337483.1| - 1.5e-05 25.3 0.0 7.4e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|327310586|ref|YP_004337483.1| - 0.0028 17.3 0.7 0.0057 16.3 0.1 1.9 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|327310586|ref|YP_004337483.1| - 0.0036 17.4 0.0 0.0071 16.4 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.16 gi|327310586|ref|YP_004337483.1| - 0.0067 16.2 0.0 0.3 10.9 0.0 2.4 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|327310586|ref|YP_004337483.1| - 0.0069 15.7 0.0 0.035 13.4 0.0 2.0 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|327310586|ref|YP_004337483.1| - 0.0071 16.3 0.2 1.6 8.7 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|327310586|ref|YP_004337483.1| - 0.0073 16.5 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|327310586|ref|YP_004337483.1| - 0.028 13.8 0.2 0.053 12.9 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|327310586|ref|YP_004337483.1| - 0.072 13.0 0.2 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 NADH(P)-binding ELFV_dehydrog PF00208.16 gi|327310586|ref|YP_004337483.1| - 0.08 12.5 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UPF0066 PF01980.11 gi|327310587|ref|YP_004337484.1| - 5.8e-34 116.6 0.0 6.9e-34 116.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 DUF4382 PF14321.1 gi|327310588|ref|YP_004337485.1| - 2.6e-16 59.9 0.0 2.9e-16 59.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) p12I PF12233.3 gi|327310588|ref|YP_004337485.1| - 0.041 14.1 0.1 0.075 13.3 0.0 1.6 1 0 0 1 1 1 0 Human adult T cell leukemia/lymphoma virus protein CathepsinC_exc PF08773.6 gi|327310588|ref|YP_004337485.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Cathepsin C exclusion domain LysE PF01810.13 gi|327310589|ref|YP_004337486.1| - 3.4e-15 55.8 12.4 4.1e-15 55.5 8.6 1.1 1 0 0 1 1 1 1 LysE type translocator NUDIX PF00293.23 gi|327310590|ref|YP_004337487.1| - 2.5e-14 53.0 0.3 3.5e-14 52.6 0.2 1.3 1 1 0 1 1 1 1 NUDIX domain TauE PF01925.14 gi|327310591|ref|YP_004337488.1| - 0.00039 19.9 1.5 0.00043 19.8 1.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF318 PF03773.8 gi|327310591|ref|YP_004337488.1| - 0.047 12.6 0.8 0.049 12.6 0.5 1.0 1 0 0 1 1 1 0 Predicted permease DUF2776 PF10951.3 gi|327310591|ref|YP_004337488.1| - 0.12 11.4 0.2 0.14 11.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2776) DUF1602 PF07673.9 gi|327310593|ref|YP_004337490.1| - 0.014 14.8 3.2 0.015 14.7 1.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1602) eIF-5_eIF-2B PF01873.12 gi|327310594|ref|YP_004337491.1| - 7.6e-32 109.6 0.0 9e-32 109.3 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.7 gi|327310594|ref|YP_004337491.1| - 0.00017 20.8 0.7 0.00026 20.2 0.5 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|327310594|ref|YP_004337491.1| - 0.0022 18.2 0.3 0.0038 17.4 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|327310594|ref|YP_004337491.1| - 0.0058 16.5 0.8 0.012 15.5 0.5 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|327310594|ref|YP_004337491.1| - 0.01 15.0 1.2 1.3 8.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Elf1 PF05129.8 gi|327310594|ref|YP_004337491.1| - 0.015 15.0 0.2 0.026 14.2 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Tmemb_55A PF09788.4 gi|327310594|ref|YP_004337491.1| - 0.028 13.5 0.0 0.029 13.4 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A SUI1 PF01253.17 gi|327310594|ref|YP_004337491.1| - 0.043 13.6 0.0 0.066 13.0 0.0 1.3 1 0 0 1 1 1 0 Translation initiation factor SUI1 OrfB_Zn_ribbon PF07282.6 gi|327310594|ref|YP_004337491.1| - 0.043 13.4 0.1 0.072 12.7 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.6 gi|327310594|ref|YP_004337491.1| - 0.068 13.0 1.5 0.25 11.1 0.1 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_S27e PF01667.12 gi|327310594|ref|YP_004337491.1| - 0.068 12.7 0.3 0.1 12.1 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zf-NADH-PPase PF09297.6 gi|327310594|ref|YP_004337491.1| - 0.095 12.2 2.4 0.69 9.4 1.7 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|327310594|ref|YP_004337491.1| - 0.23 11.4 1.2 15 5.6 0.1 1.9 1 1 0 2 2 2 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|327310594|ref|YP_004337491.1| - 0.26 10.7 1.2 13 5.2 0.0 2.3 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain FdhE PF04216.7 gi|327310594|ref|YP_004337491.1| - 0.54 9.9 2.0 1.7 8.3 1.3 1.8 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation Thiolase_N PF00108.18 gi|327310595|ref|YP_004337492.1| - 8e-71 238.1 0.0 1.1e-70 237.6 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|327310595|ref|YP_004337492.1| - 5.3e-48 161.5 0.6 1.3e-47 160.2 0.2 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|327310595|ref|YP_004337492.1| - 4.2e-07 29.7 0.1 7.4e-06 25.6 0.0 2.5 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.5 gi|327310595|ref|YP_004337492.1| - 0.018 15.0 0.1 1.2 9.2 0.0 3.0 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Homeobox_KN PF05920.6 gi|327310595|ref|YP_004337492.1| - 0.12 12.1 0.0 4.1 7.1 0.0 2.3 2 0 0 2 2 2 0 Homeobox KN domain ECH PF00378.15 gi|327310596|ref|YP_004337493.1| - 1.3e-70 237.3 0.0 2.1e-70 236.6 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|327310596|ref|YP_004337493.1| - 2.5e-58 196.6 0.3 3.9e-58 196.0 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|327310596|ref|YP_004337493.1| - 1.1e-50 169.9 0.1 3.6e-25 88.1 0.0 3.0 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_C PF13766.1 gi|327310596|ref|YP_004337493.1| - 0.00068 19.7 0.0 0.011 15.8 0.0 2.5 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region Peptidase_M42 PF05343.9 gi|327310597|ref|YP_004337494.1| - 2.2e-104 348.3 0.1 2.6e-104 348.1 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|327310597|ref|YP_004337494.1| - 1.5e-13 50.7 0.2 2.4e-13 49.9 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|327310597|ref|YP_004337494.1| - 0.00028 20.6 0.1 0.0008 19.1 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|327310597|ref|YP_004337494.1| - 0.0035 15.9 0.0 0.0061 15.1 0.0 1.4 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) SM-ATX PF14438.1 gi|327310597|ref|YP_004337494.1| - 0.049 13.5 0.1 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 Ataxin 2 SM domain AMP-binding PF00501.23 gi|327310598|ref|YP_004337495.1| - 2.1e-77 260.2 0.0 2.7e-77 259.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|327310598|ref|YP_004337495.1| - 8.8e-17 61.8 0.2 2.9e-16 60.1 0.0 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Aldo_ket_red PF00248.16 gi|327310599|ref|YP_004337496.1| - 3e-62 210.0 0.0 3.4e-62 209.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family AMP-binding PF00501.23 gi|327310600|ref|YP_004337497.1| - 1.7e-109 365.9 0.0 2.1e-109 365.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|327310600|ref|YP_004337497.1| - 7.1e-19 68.5 0.1 2.3e-18 66.9 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1967 PF09269.6 gi|327310600|ref|YP_004337497.1| - 0.032 13.9 0.0 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) Acyl-CoA_dh_1 PF00441.19 gi|327310601|ref|YP_004337498.1| - 6.5e-43 146.4 4.6 1.2e-42 145.5 3.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|327310601|ref|YP_004337498.1| - 1e-34 119.4 0.2 3.5e-34 117.7 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|327310601|ref|YP_004337498.1| - 5e-20 70.7 0.0 9.1e-20 69.9 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|327310601|ref|YP_004337498.1| - 6.2e-20 71.8 1.4 1e-19 71.1 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Thiolase_N PF00108.18 gi|327310602|ref|YP_004337499.1| - 1.8e-14 53.3 0.1 3.8e-12 45.7 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|327310602|ref|YP_004337499.1| - 1.5e-09 37.3 0.3 2.6e-08 33.3 0.1 2.9 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|327310602|ref|YP_004337499.1| - 0.00037 20.0 2.2 0.00037 20.0 1.5 3.0 2 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|327310602|ref|YP_004337499.1| - 0.00055 19.5 0.1 0.0055 16.3 0.1 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HSP70 PF00012.15 gi|327310602|ref|YP_004337499.1| - 0.053 11.4 0.0 0.073 10.9 0.0 1.1 1 0 0 1 1 1 0 Hsp70 protein Glyco_hydro_11 PF00457.12 gi|327310602|ref|YP_004337499.1| - 0.062 12.6 1.0 0.16 11.2 0.2 1.9 1 1 1 2 2 2 0 Glycosyl hydrolases family 11 DUF35 PF01796.12 gi|327310603|ref|YP_004337500.1| - 3.9e-15 55.8 0.2 7.6e-15 54.8 0.1 1.5 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|327310603|ref|YP_004337500.1| - 2.5e-09 36.7 1.7 2.5e-09 36.7 1.2 2.6 3 0 0 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Cucumo_coat PF00760.13 gi|327310603|ref|YP_004337500.1| - 0.0054 15.7 0.0 0.026 13.4 0.0 1.9 2 0 0 2 2 2 1 Cucumovirus coat protein DZR PF12773.2 gi|327310603|ref|YP_004337500.1| - 0.027 14.2 0.8 0.043 13.6 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|327310603|ref|YP_004337500.1| - 0.11 12.1 0.2 0.2 11.3 0.0 1.5 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_3 PF13920.1 gi|327310603|ref|YP_004337500.1| - 0.14 11.8 1.1 0.22 11.2 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Lar_restr_allev PF14354.1 gi|327310603|ref|YP_004337500.1| - 0.2 11.9 1.8 3.4 8.0 1.3 2.2 1 1 0 1 1 1 0 Restriction alleviation protein Lar Meth_synt_2 PF01717.13 gi|327310604|ref|YP_004337501.1| - 7.1e-45 153.3 0.0 1.5e-27 96.4 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|327310604|ref|YP_004337501.1| - 2.2e-09 37.0 0.1 0.00014 21.2 0.0 3.1 3 0 0 3 3 3 2 Cobalamin-independent synthase, N-terminal domain DUF262 PF03235.9 gi|327310604|ref|YP_004337501.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF262 PaREP1 PF05942.6 gi|327310605|ref|YP_004337502.1| - 1.1e-31 109.0 3.3 1.5e-31 108.6 2.3 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family MarC PF01914.12 gi|327310607|ref|YP_004337504.1| - 1.2e-33 116.0 12.7 1.5e-33 115.6 8.8 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Cren7 PF11520.3 gi|327310608|ref|YP_004337505.1| - 3.2e-21 74.6 2.6 3.2e-21 74.6 1.8 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 CcdA PF07362.7 gi|327310609|ref|YP_004337506.1| - 0.11 12.3 0.3 0.13 12.1 0.2 1.3 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA Nif11 PF07862.6 gi|327310609|ref|YP_004337506.1| - 0.17 11.8 1.0 0.37 10.7 0.7 1.5 1 0 0 1 1 1 0 Nitrogen fixation protein of unknown function Adeno_terminal PF02459.10 gi|327310609|ref|YP_004337506.1| - 0.92 7.5 6.5 1 7.4 4.5 1.0 1 0 0 1 1 1 0 Adenoviral DNA terminal protein FUSC PF04632.7 gi|327310609|ref|YP_004337506.1| - 2.5 6.4 4.8 2.5 6.4 3.3 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family PIN PF01850.16 gi|327310610|ref|YP_004337507.1| - 3.4e-16 59.6 4.7 3.9e-16 59.4 3.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|327310610|ref|YP_004337507.1| - 0.045 13.7 0.2 0.053 13.5 0.2 1.2 1 0 0 1 1 1 0 PIN domain Bac_Ubq_Cox PF01654.12 gi|327310611|ref|YP_004337508.1| - 0.0034 15.8 22.5 0.0046 15.4 6.3 3.0 1 1 0 2 2 2 2 Bacterial Cytochrome Ubiquinol Oxidase DUF3341 PF11821.3 gi|327310611|ref|YP_004337508.1| - 6.3 6.2 9.2 0.32 10.4 0.8 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3341) Bac_Ubq_Cox PF01654.12 gi|327310612|ref|YP_004337509.1| - 3.9e-67 226.5 26.9 1.2e-66 224.9 18.7 1.7 1 1 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase TrmB PF01978.14 gi|327310613|ref|YP_004337510.1| - 5.5e-06 26.0 0.0 9.4e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|327310613|ref|YP_004337510.1| - 0.00018 21.2 0.0 0.00037 20.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|327310613|ref|YP_004337510.1| - 0.0022 17.6 0.3 0.012 15.3 0.0 2.1 2 0 0 2 2 2 1 MarR family Metallophos_2 PF12850.2 gi|327310614|ref|YP_004337511.1| - 1.7e-27 96.1 0.1 1.9e-27 95.9 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|327310614|ref|YP_004337511.1| - 0.0012 18.2 0.9 0.37 10.1 0.0 2.6 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase ATP-sulfurylase PF01747.12 gi|327310617|ref|YP_004337514.1| - 9.4e-77 257.1 0.0 1.2e-76 256.7 0.0 1.1 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|327310617|ref|YP_004337514.1| - 2e-39 134.5 0.0 8.6e-39 132.5 0.0 1.8 2 0 0 2 2 2 1 PUA-like domain DUF2448 PF10476.4 gi|327310618|ref|YP_004337515.1| - 0.011 15.2 0.3 0.024 14.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function C-terminus (DUF2448) APS-reductase_C PF12139.3 gi|327310619|ref|YP_004337516.1| - 7.4e-26 90.1 0.0 9.9e-26 89.7 0.0 1.1 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4_7 PF12838.2 gi|327310619|ref|YP_004337516.1| - 3.8e-09 36.7 12.9 6.3e-09 36.0 8.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327310619|ref|YP_004337516.1| - 4e-09 36.1 12.9 6.4e-09 35.4 9.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|327310619|ref|YP_004337516.1| - 1.2e-08 34.1 14.0 2.1e-05 23.9 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|327310619|ref|YP_004337516.1| - 2.6e-08 33.9 13.0 4.5e-08 33.2 9.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327310619|ref|YP_004337516.1| - 5.4e-08 32.3 15.2 3.9e-05 23.3 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|327310619|ref|YP_004337516.1| - 6.1e-07 30.0 6.0 0.003 18.2 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|327310619|ref|YP_004337516.1| - 1.9e-06 27.7 12.6 0.00042 20.4 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|327310619|ref|YP_004337516.1| - 5.4e-06 26.0 14.6 0.0015 18.2 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|327310619|ref|YP_004337516.1| - 0.001 19.0 13.0 0.003 17.5 9.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327310619|ref|YP_004337516.1| - 0.0021 17.8 13.1 0.15 11.9 2.6 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327310619|ref|YP_004337516.1| - 0.0022 18.3 14.4 0.25 11.7 10.1 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327310619|ref|YP_004337516.1| - 0.0034 17.8 17.9 0.021 15.3 3.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|327310619|ref|YP_004337516.1| - 0.0078 16.6 14.8 0.19 12.1 3.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|327310619|ref|YP_004337516.1| - 0.28 11.7 12.3 0.32 11.5 1.8 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|327310619|ref|YP_004337516.1| - 0.92 9.4 7.7 5.5 6.9 0.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|327310619|ref|YP_004337516.1| - 0.99 9.8 12.8 20 5.6 8.9 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain FAD_binding_2 PF00890.19 gi|327310620|ref|YP_004337517.1| - 6.7e-12 44.9 0.2 2.6e-11 43.0 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|327310620|ref|YP_004337517.1| - 1.9e-06 27.0 0.2 2.7e-05 23.2 0.0 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.15 gi|327310620|ref|YP_004337517.1| - 1.3e-05 25.1 0.0 2.4e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|327310620|ref|YP_004337517.1| - 3.5e-05 23.7 0.1 8.9e-05 22.4 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|327310620|ref|YP_004337517.1| - 0.0041 16.0 4.8 0.38 9.5 0.6 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|327310620|ref|YP_004337517.1| - 0.017 14.1 0.0 0.034 13.2 0.0 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|327310620|ref|YP_004337517.1| - 0.31 9.4 1.2 1.4 7.3 0.4 2.0 2 0 0 2 2 2 0 HI0933-like protein MobB PF03205.9 gi|327310621|ref|YP_004337518.1| - 2.5e-07 30.4 0.1 3.9e-07 29.8 0.1 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|327310621|ref|YP_004337518.1| - 0.036 13.6 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TusA PF01206.12 gi|327310622|ref|YP_004337519.1| - 5.3e-06 25.9 0.0 6.2e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE PF02635.10 gi|327310623|ref|YP_004337520.1| - 3.2e-07 30.4 0.0 4.1e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|327310623|ref|YP_004337520.1| - 1.6e-06 28.0 0.0 3.1e-05 23.8 0.0 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family RtcB PF01139.12 gi|327310624|ref|YP_004337521.1| - 4.2e-152 506.9 0.0 4.9e-152 506.7 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB CorA PF01544.13 gi|327310625|ref|YP_004337522.1| - 3.9e-20 72.0 0.0 4.8e-20 71.7 0.0 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein HTH_33 PF13592.1 gi|327310625|ref|YP_004337522.1| - 0.083 12.4 0.2 0.18 11.3 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DUF1512 PF07431.7 gi|327310626|ref|YP_004337523.1| - 2.2e-126 421.3 0.3 2.6e-126 421.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) PspC PF04024.7 gi|327310628|ref|YP_004337525.1| - 0.021 14.3 0.4 0.021 14.3 0.3 2.0 2 0 0 2 2 2 0 PspC domain Tox-REase-2 PF15646.1 gi|327310630|ref|YP_004337527.1| - 0.0072 16.1 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease fold toxin 2 AAA_13 PF13166.1 gi|327310631|ref|YP_004337528.1| - 1.4e-07 30.4 32.8 0.00043 18.9 0.5 3.0 1 1 2 3 3 3 2 AAA domain NPV_P10 PF05531.7 gi|327310631|ref|YP_004337528.1| - 3.7e-06 27.1 16.0 0.54 10.5 0.4 6.3 2 1 2 5 5 5 2 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|327310631|ref|YP_004337528.1| - 4.6e-06 26.5 18.2 0.071 12.9 2.7 5.4 2 1 2 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|327310631|ref|YP_004337528.1| - 7.9e-06 25.2 15.6 0.0014 17.8 6.7 3.6 1 1 2 3 3 3 2 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|327310631|ref|YP_004337528.1| - 0.00049 18.8 51.5 0.0052 15.4 17.8 3.9 2 2 2 4 4 4 2 Spc7 kinetochore protein DUF869 PF05911.6 gi|327310631|ref|YP_004337528.1| - 0.00068 18.0 37.3 0.0025 16.1 20.1 2.9 1 1 2 3 3 3 1 Plant protein of unknown function (DUF869) DUF948 PF06103.6 gi|327310631|ref|YP_004337528.1| - 0.0017 18.1 14.5 0.48 10.3 0.3 5.0 1 1 3 5 5 5 2 Bacterial protein of unknown function (DUF948) HsbA PF12296.3 gi|327310631|ref|YP_004337528.1| - 0.0027 17.5 8.1 0.0046 16.7 2.9 2.9 2 1 1 3 3 3 1 Hydrophobic surface binding protein A IFT57 PF10498.4 gi|327310631|ref|YP_004337528.1| - 0.0055 15.5 34.3 0.056 12.1 9.8 4.0 1 1 4 5 5 5 2 Intra-flagellar transport protein 57 SNARE PF05739.14 gi|327310631|ref|YP_004337528.1| - 0.014 15.0 0.1 0.014 15.0 0.1 4.8 3 1 0 4 4 4 0 SNARE domain Mating_N PF12731.2 gi|327310631|ref|YP_004337528.1| - 0.018 14.8 3.2 0.2 11.5 0.7 2.9 2 1 0 2 2 2 0 Mating-type protein beta 1 MCPsignal PF00015.16 gi|327310631|ref|YP_004337528.1| - 0.036 13.6 17.9 0.11 11.9 4.3 3.8 1 1 0 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FliD_C PF07195.7 gi|327310631|ref|YP_004337528.1| - 0.056 12.7 13.3 1.9 7.7 0.0 4.4 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 C-terminus PilJ PF13675.1 gi|327310631|ref|YP_004337528.1| - 0.056 13.7 26.2 1.4 9.2 0.0 5.1 2 1 1 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term V_ATPase_I PF01496.14 gi|327310631|ref|YP_004337528.1| - 0.059 11.2 34.6 0.079 10.8 15.3 3.4 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family AAA_27 PF13514.1 gi|327310631|ref|YP_004337528.1| - 0.064 10.9 49.6 0.021 12.5 1.8 2.4 1 1 1 2 2 2 0 AAA domain Filo_VP35 PF02097.10 gi|327310631|ref|YP_004337528.1| - 0.12 11.4 7.1 0.19 10.9 0.5 2.6 1 1 0 2 2 2 0 Filoviridae VP35 BLOC1_2 PF10046.4 gi|327310631|ref|YP_004337528.1| - 0.33 11.0 36.1 0.052 13.7 0.9 6.3 2 1 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|327310631|ref|YP_004337528.1| - 0.44 10.1 57.4 1 8.9 1.0 4.6 1 1 2 4 4 4 0 IncA protein DUF2365 PF10157.4 gi|327310631|ref|YP_004337528.1| - 0.45 10.3 15.2 0.1 12.4 0.4 4.1 1 1 3 4 4 4 0 Uncharacterized conserved protein (DUF2365) Rootletin PF15035.1 gi|327310631|ref|YP_004337528.1| - 0.51 10.2 51.6 0.019 14.9 3.9 5.3 1 1 2 4 4 3 0 Ciliary rootlet component, centrosome cohesion Fib_alpha PF08702.5 gi|327310631|ref|YP_004337528.1| - 0.52 10.4 26.7 2.5 8.2 2.5 4.6 1 1 4 5 5 5 0 Fibrinogen alpha/beta chain family Img2 PF05046.9 gi|327310631|ref|YP_004337528.1| - 0.56 10.4 6.6 20 5.5 0.9 4.1 1 1 1 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) DUF3552 PF12072.3 gi|327310631|ref|YP_004337528.1| - 0.82 8.8 65.8 1.1 8.3 9.5 5.1 1 1 4 5 5 5 0 Domain of unknown function (DUF3552) WXG100 PF06013.7 gi|327310631|ref|YP_004337528.1| - 0.93 9.5 25.3 15 5.6 0.2 7.4 4 1 3 8 8 7 0 Proteins of 100 residues with WXG Corona_S2 PF01601.11 gi|327310631|ref|YP_004337528.1| - 0.99 7.4 3.3 0.42 8.6 0.5 1.7 2 0 0 2 2 2 0 Coronavirus S2 glycoprotein FlaC_arch PF05377.6 gi|327310631|ref|YP_004337528.1| - 1.1 9.2 28.6 13 5.7 0.2 7.4 5 2 1 6 6 6 0 Flagella accessory protein C (FlaC) ATG16 PF08614.6 gi|327310631|ref|YP_004337528.1| - 1.3 8.7 52.2 0.45 10.3 7.2 5.0 2 1 3 5 5 5 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|327310631|ref|YP_004337528.1| - 1.6 8.5 30.0 0.21 11.3 0.4 5.5 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) Tweety PF04906.8 gi|327310631|ref|YP_004337528.1| - 7 4.9 16.4 1.9 6.8 0.2 4.1 1 1 2 4 4 4 0 Tweety DUF4200 PF13863.1 gi|327310631|ref|YP_004337528.1| - 8 6.4 67.8 3.1 7.7 6.9 5.2 3 2 2 5 5 5 0 Domain of unknown function (DUF4200) Nsp1_C PF05064.8 gi|327310631|ref|YP_004337528.1| - 8.8 6.0 30.6 0.098 12.3 0.9 5.6 3 2 2 5 5 4 0 Nsp1-like C-terminal region DUF2408 PF10303.4 gi|327310632|ref|YP_004337529.1| - 0.021 14.9 0.0 0.035 14.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) APH_6_hur PF04655.9 gi|327310632|ref|YP_004337529.1| - 0.075 12.1 1.9 0.09 11.9 1.3 1.1 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase FUSC-like PF12805.2 gi|327310632|ref|YP_004337529.1| - 0.076 11.9 0.3 0.091 11.6 0.2 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS DUF770 PF05591.7 gi|327310632|ref|YP_004337529.1| - 0.08 12.4 1.0 0.13 11.8 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF770) KfrA_N PF11740.3 gi|327310632|ref|YP_004337529.1| - 0.081 13.3 6.6 0.11 13.0 4.6 1.2 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term DUF1993 PF09351.5 gi|327310632|ref|YP_004337529.1| - 0.084 12.7 0.1 0.097 12.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) T2SF PF00482.18 gi|327310632|ref|YP_004337529.1| - 0.1 12.5 0.2 0.13 12.2 0.2 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F Spc7 PF08317.6 gi|327310632|ref|YP_004337529.1| - 0.11 11.1 0.4 0.14 10.8 0.3 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF2277 PF10041.4 gi|327310632|ref|YP_004337529.1| - 0.13 12.2 0.5 0.31 11.0 0.1 1.8 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2277) PEP-utilisers_N PF05524.8 gi|327310632|ref|YP_004337529.1| - 0.27 11.0 6.7 0.79 9.5 2.3 2.0 1 1 1 2 2 2 0 PEP-utilising enzyme, N-terminal Snapin_Pallidin PF14712.1 gi|327310632|ref|YP_004337529.1| - 0.31 11.3 2.8 6.7 7.0 0.0 2.4 2 1 0 2 2 2 0 Snapin/Pallidin ATP-synt_B PF00430.13 gi|327310632|ref|YP_004337529.1| - 1.3 8.8 7.3 0.33 10.7 2.1 1.9 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) DinB_2 PF12867.2 gi|327310632|ref|YP_004337529.1| - 2.7 8.3 4.6 37 4.6 3.2 2.5 1 1 0 1 1 1 0 DinB superfamily Hexapep PF00132.19 gi|327310633|ref|YP_004337530.1| - 7.9e-29 97.8 32.8 5.8e-09 35.0 0.4 5.5 4 1 0 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|327310633|ref|YP_004337530.1| - 4.8e-16 58.0 27.1 5.8e-07 28.9 2.6 5.8 3 1 2 6 6 6 5 Hexapeptide repeat of succinyl-transferase Phage_holin_5 PF06946.6 gi|327310633|ref|YP_004337530.1| - 0.11 12.6 0.1 0.23 11.6 0.1 1.5 1 0 0 1 1 1 0 Phage holin AAA PF00004.24 gi|327310634|ref|YP_004337531.1| - 5.4e-100 330.7 0.0 2.1e-50 170.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|327310634|ref|YP_004337531.1| - 4.2e-31 106.7 0.2 3.9e-30 103.6 0.3 2.6 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|327310634|ref|YP_004337531.1| - 1.8e-15 56.6 0.0 1e-07 31.2 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|327310634|ref|YP_004337531.1| - 2.3e-14 53.6 0.0 1.7e-07 31.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|327310634|ref|YP_004337531.1| - 4.9e-14 52.5 0.2 6e-06 26.4 0.0 3.9 2 2 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|327310634|ref|YP_004337531.1| - 1.4e-12 48.0 0.0 5.1e-06 26.6 0.0 3.1 3 1 0 3 3 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|327310634|ref|YP_004337531.1| - 4.5e-12 46.8 0.1 8.8e-06 26.5 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|327310634|ref|YP_004337531.1| - 3e-11 43.3 0.0 5.3e-05 23.1 0.0 2.9 3 0 0 3 3 2 2 AAA domain CDC48_2 PF02933.12 gi|327310634|ref|YP_004337531.1| - 3.1e-11 42.7 0.5 7.2e-11 41.5 0.3 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.9 gi|327310634|ref|YP_004337531.1| - 3.5e-11 42.9 0.5 0.0003 20.5 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|327310634|ref|YP_004337531.1| - 8.1e-11 41.9 0.0 1.7e-05 24.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|327310634|ref|YP_004337531.1| - 2.6e-09 36.2 0.0 0.00049 18.9 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|327310634|ref|YP_004337531.1| - 5e-09 35.8 0.1 0.0021 17.5 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|327310634|ref|YP_004337531.1| - 7e-09 35.0 0.0 0.00024 20.2 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin RNA_helicase PF00910.17 gi|327310634|ref|YP_004337531.1| - 2.5e-07 30.8 0.0 0.021 15.0 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|327310634|ref|YP_004337531.1| - 2.8e-07 30.8 0.1 0.0069 16.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|327310634|ref|YP_004337531.1| - 4e-07 30.1 0.0 0.004 17.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|327310634|ref|YP_004337531.1| - 4.4e-07 29.7 0.1 0.022 14.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|327310634|ref|YP_004337531.1| - 5e-07 29.3 0.4 0.0049 16.5 0.0 3.8 3 0 0 3 3 2 2 Part of AAA domain Mg_chelatase PF01078.16 gi|327310634|ref|YP_004337531.1| - 6.9e-07 28.6 0.2 0.033 13.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|327310634|ref|YP_004337531.1| - 1.9e-06 27.7 0.9 0.004 16.8 0.1 3.4 3 2 0 3 3 2 1 Archaeal ATPase NACHT PF05729.7 gi|327310634|ref|YP_004337531.1| - 2.3e-06 27.3 0.1 0.13 11.9 0.0 3.7 4 0 0 4 4 4 2 NACHT domain AAA_25 PF13481.1 gi|327310634|ref|YP_004337531.1| - 2.4e-06 27.0 6.4 0.13 11.6 0.1 4.1 2 2 1 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|327310634|ref|YP_004337531.1| - 8e-06 25.4 0.0 0.093 12.2 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain Vps4_C PF09336.5 gi|327310634|ref|YP_004337531.1| - 2.7e-05 23.9 0.3 0.065 13.1 0.0 3.8 3 0 0 3 3 3 1 Vps4 C terminal oligomerisation domain KaiC PF06745.8 gi|327310634|ref|YP_004337531.1| - 3.7e-05 22.9 0.3 0.27 10.3 0.0 3.5 2 1 1 3 3 3 2 KaiC DUF815 PF05673.8 gi|327310634|ref|YP_004337531.1| - 3.7e-05 22.7 0.0 0.094 11.6 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|327310634|ref|YP_004337531.1| - 5.8e-05 23.1 0.0 0.51 10.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|327310634|ref|YP_004337531.1| - 0.0002 20.9 0.0 0.84 9.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|327310634|ref|YP_004337531.1| - 0.00023 20.8 0.0 0.074 12.6 0.0 2.9 3 1 0 3 3 3 1 Bacterial dnaA protein NB-ARC PF00931.17 gi|327310634|ref|YP_004337531.1| - 0.00028 19.8 0.0 0.33 9.7 0.0 2.8 3 0 0 3 3 3 1 NB-ARC domain NTPase_1 PF03266.10 gi|327310634|ref|YP_004337531.1| - 0.00062 19.5 1.1 3.3 7.3 0.0 3.8 3 1 1 4 4 3 0 NTPase ABC_tran PF00005.22 gi|327310634|ref|YP_004337531.1| - 0.0016 18.7 0.0 1.2 9.3 0.0 2.9 2 0 0 2 2 2 1 ABC transporter UPF0079 PF02367.12 gi|327310634|ref|YP_004337531.1| - 0.0021 17.6 0.0 2.3 7.8 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Parvo_NS1 PF01057.12 gi|327310634|ref|YP_004337531.1| - 0.0022 16.9 0.1 0.21 10.4 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|327310634|ref|YP_004337531.1| - 0.0027 16.9 0.5 0.35 10.0 0.0 2.9 3 0 0 3 3 2 1 PhoH-like protein SKI PF01202.17 gi|327310634|ref|YP_004337531.1| - 0.0033 17.2 0.1 3.3 7.5 0.0 2.8 2 0 0 2 2 2 0 Shikimate kinase Antitoxin-MazE PF04014.13 gi|327310634|ref|YP_004337531.1| - 0.0042 16.7 2.6 0.011 15.4 0.4 2.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE AAA_11 PF13086.1 gi|327310634|ref|YP_004337531.1| - 0.0054 16.3 0.0 1.5 8.3 0.0 2.6 3 0 0 3 3 2 1 AAA domain AFG1_ATPase PF03969.11 gi|327310634|ref|YP_004337531.1| - 0.0059 15.4 0.0 1.3 7.7 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase KAP_NTPase PF07693.9 gi|327310634|ref|YP_004337531.1| - 0.0074 15.3 0.1 7.9 5.3 0.0 3.4 2 2 1 4 4 4 0 KAP family P-loop domain Guanylate_kin PF00625.16 gi|327310634|ref|YP_004337531.1| - 0.014 14.8 0.1 19 4.6 0.0 3.7 2 2 2 4 4 4 0 Guanylate kinase ATP-synt_ab PF00006.20 gi|327310634|ref|YP_004337531.1| - 0.016 14.7 0.0 3.5 7.0 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain IPT PF01745.11 gi|327310634|ref|YP_004337531.1| - 0.016 14.3 0.1 2.3 7.3 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase T2SE PF00437.15 gi|327310634|ref|YP_004337531.1| - 0.017 14.0 0.0 0.7 8.7 0.0 2.6 3 0 0 3 3 2 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|327310634|ref|YP_004337531.1| - 0.029 13.9 0.1 3.3 7.2 0.0 2.9 3 0 0 3 3 2 0 AAA domain AAA_10 PF12846.2 gi|327310634|ref|YP_004337531.1| - 0.029 13.8 0.4 5.5 6.3 0.0 3.0 2 1 0 3 3 3 0 AAA-like domain Viral_helicase1 PF01443.13 gi|327310634|ref|YP_004337531.1| - 0.031 13.7 0.0 1.8 8.0 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|327310634|ref|YP_004337531.1| - 0.036 13.8 0.0 3.1 7.6 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|327310634|ref|YP_004337531.1| - 0.036 13.0 0.0 0.23 10.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) UFD1 PF03152.9 gi|327310634|ref|YP_004337531.1| - 0.046 12.8 0.0 1.3 8.1 0.0 2.4 1 1 1 2 2 2 0 Ubiquitin fusion degradation protein UFD1 KTI12 PF08433.5 gi|327310634|ref|YP_004337531.1| - 0.1 11.7 0.0 14 4.7 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_23 PF13476.1 gi|327310634|ref|YP_004337531.1| - 0.14 12.4 0.0 27 4.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain PPV_E1_C PF00519.12 gi|327310634|ref|YP_004337531.1| - 0.43 9.1 0.0 14 4.1 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase HSP20 PF00011.16 gi|327310635|ref|YP_004337532.1| - 7.5e-11 41.8 2.6 1.8e-09 37.3 1.8 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|327310635|ref|YP_004337532.1| - 3e-06 27.0 0.1 3.6e-06 26.7 0.1 1.1 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|327310635|ref|YP_004337532.1| - 0.00065 20.1 0.1 0.001 19.5 0.0 1.3 1 0 0 1 1 1 1 CS domain DUF3788 PF12663.2 gi|327310635|ref|YP_004337532.1| - 0.066 12.8 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3788) PNP_UDP_1 PF01048.15 gi|327310637|ref|YP_004337534.1| - 1.5e-32 112.4 3.8 1.9e-32 112.1 2.6 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily FYVE PF01363.16 gi|327310638|ref|YP_004337535.1| - 0.02 14.7 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 FYVE zinc finger DUF1272 PF06906.6 gi|327310638|ref|YP_004337535.1| - 0.046 13.5 0.0 0.095 12.5 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Med27 PF11571.3 gi|327310638|ref|YP_004337535.1| - 0.13 12.4 0.2 6.9 6.8 0.0 2.1 1 1 1 2 2 2 0 Mediator complex subunit 27 zf-ribbon_3 PF13248.1 gi|327310638|ref|YP_004337535.1| - 0.15 11.2 0.6 0.26 10.5 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF340 PF03956.8 gi|327310639|ref|YP_004337536.1| - 2.4e-44 150.9 13.4 2.4e-44 150.9 9.3 2.1 2 1 0 2 2 2 1 Membrane protein of unknown function (DUF340) Flavoprotein PF02441.14 gi|327310640|ref|YP_004337537.1| - 2.7e-30 104.6 0.0 3.9e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein RHH_1 PF01402.16 gi|327310641|ref|YP_004337538.1| - 0.00049 19.8 4.0 0.00089 19.0 0.1 2.4 2 1 1 3 3 3 2 Ribbon-helix-helix protein, copG family SIS PF01380.17 gi|327310642|ref|YP_004337539.1| - 6e-16 58.2 0.0 1e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|327310642|ref|YP_004337539.1| - 3.2e-12 46.3 3.1 2.5e-07 30.4 1.2 2.3 1 1 1 2 2 2 2 SIS domain CPSase_L_chain PF00289.17 gi|327310642|ref|YP_004337539.1| - 0.14 12.2 0.4 0.47 10.5 0.0 1.9 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AlaDh_PNT_C PF01262.16 gi|327310642|ref|YP_004337539.1| - 0.15 11.6 5.6 1.9 8.0 1.0 2.2 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AdoMet_dc PF02675.10 gi|327310643|ref|YP_004337540.1| - 2.2e-36 123.9 0.0 2.4e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Citrate_synt PF00285.16 gi|327310644|ref|YP_004337541.1| - 4.6e-120 400.6 0.0 5.1e-120 400.4 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase QRPTase_C PF01729.14 gi|327310645|ref|YP_004337542.1| - 4.1e-15 55.7 0.0 6.2e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|327310645|ref|YP_004337542.1| - 4.6e-05 23.1 0.0 8.4e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain FAD_binding_3 PF01494.14 gi|327310646|ref|YP_004337543.1| - 5.1e-14 52.1 1.1 7.1e-10 38.4 0.0 3.0 2 1 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|327310646|ref|YP_004337543.1| - 2.3e-07 30.2 0.2 3.8e-07 29.5 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|327310646|ref|YP_004337543.1| - 3.2e-06 26.3 0.6 3.2e-05 22.9 0.0 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|327310646|ref|YP_004337543.1| - 7.2e-06 24.8 0.0 0.012 14.2 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|327310646|ref|YP_004337543.1| - 1.4e-05 24.1 0.2 0.0018 17.2 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|327310646|ref|YP_004337543.1| - 2e-05 24.5 0.5 5.2e-05 23.2 0.0 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|327310646|ref|YP_004337543.1| - 3.4e-05 22.8 0.3 9.4e-05 21.4 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|327310646|ref|YP_004337543.1| - 0.00018 20.1 0.0 0.00031 19.3 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|327310646|ref|YP_004337543.1| - 0.0005 20.4 0.0 0.0012 19.1 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|327310646|ref|YP_004337543.1| - 0.00081 19.3 0.2 0.0024 17.8 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|327310646|ref|YP_004337543.1| - 0.0017 17.2 0.0 0.0017 17.2 0.0 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|327310646|ref|YP_004337543.1| - 0.0022 17.1 0.0 0.0038 16.3 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|327310646|ref|YP_004337543.1| - 0.073 13.1 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|327310646|ref|YP_004337543.1| - 0.47 10.0 0.0 0.47 10.0 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FtsX PF02687.16 gi|327310647|ref|YP_004337544.1| - 3.8e-18 65.3 11.5 3.8e-18 65.3 8.0 2.3 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|327310647|ref|YP_004337544.1| - 7.8e-16 58.3 2.6 7.8e-16 58.3 1.8 2.7 3 1 0 3 3 3 2 MacB-like periplasmic core domain DUF2273 PF10031.4 gi|327310647|ref|YP_004337544.1| - 0.43 10.2 6.6 0.13 11.8 0.3 2.8 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) YjgP_YjgQ PF03739.9 gi|327310647|ref|YP_004337544.1| - 0.55 8.9 7.7 0.33 9.6 1.6 2.3 2 0 0 2 2 2 0 Predicted permease YjgP/YjgQ family Pyr_redox_2 PF07992.9 gi|327310648|ref|YP_004337545.1| - 1.5e-07 31.5 0.0 1.9e-06 27.8 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|327310648|ref|YP_004337545.1| - 4.6e-05 22.4 0.3 8.4e-05 21.6 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|327310648|ref|YP_004337545.1| - 0.00017 21.3 1.9 0.016 14.9 0.2 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|327310648|ref|YP_004337545.1| - 0.00026 20.9 0.1 0.00053 19.9 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|327310648|ref|YP_004337545.1| - 0.0011 19.1 0.3 0.0051 16.8 0.2 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|327310648|ref|YP_004337545.1| - 0.0055 15.6 0.1 0.0075 15.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|327310648|ref|YP_004337545.1| - 0.0065 15.4 0.1 0.011 14.6 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|327310648|ref|YP_004337545.1| - 0.034 14.5 0.6 0.082 13.3 0.2 1.8 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|327310648|ref|YP_004337545.1| - 0.041 12.4 0.3 0.061 11.9 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase HI0933_like PF03486.9 gi|327310648|ref|YP_004337545.1| - 0.075 11.4 0.0 0.13 10.7 0.0 1.3 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_7 PF13241.1 gi|327310648|ref|YP_004337545.1| - 0.15 12.3 0.1 0.33 11.2 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding GMC_oxred_N PF00732.14 gi|327310648|ref|YP_004337545.1| - 0.16 11.1 0.0 2.4 7.2 0.0 2.0 2 0 0 2 2 2 0 GMC oxidoreductase ApbA PF02558.11 gi|327310648|ref|YP_004337545.1| - 0.17 11.3 0.1 0.35 10.2 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thioredoxin_2 PF13098.1 gi|327310649|ref|YP_004337546.1| - 4.9e-05 23.4 0.0 0.0002 21.5 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|327310649|ref|YP_004337546.1| - 0.00045 19.8 2.2 0.62 9.5 0.7 2.3 2 1 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|327310649|ref|YP_004337546.1| - 0.0033 17.4 0.0 0.0067 16.4 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.15 gi|327310649|ref|YP_004337546.1| - 0.046 13.3 0.0 7 6.3 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin GalP_UDP_transf PF01087.17 gi|327310650|ref|YP_004337547.1| - 2.3e-24 86.4 0.0 7.1e-24 84.8 0.0 1.7 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|327310650|ref|YP_004337547.1| - 1.2e-12 47.6 0.0 2.7e-12 46.5 0.0 1.6 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain GHMP_kinases_N PF00288.21 gi|327310651|ref|YP_004337548.1| - 4.9e-13 48.9 1.4 9.3e-13 48.0 0.2 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|327310651|ref|YP_004337548.1| - 5.9e-10 39.2 0.4 1.4e-09 37.9 0.2 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|327310651|ref|YP_004337548.1| - 6.8e-10 38.0 0.0 1.4e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature ABC_tran PF00005.22 gi|327310652|ref|YP_004337549.1| - 3.3e-33 114.8 0.0 4.8e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310652|ref|YP_004337549.1| - 7.1e-09 36.0 0.0 7.6e-06 26.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|327310652|ref|YP_004337549.1| - 0.00036 20.5 0.7 0.42 10.7 0.0 3.0 2 0 0 2 2 2 1 TOBE domain SbcCD_C PF13558.1 gi|327310652|ref|YP_004337549.1| - 0.0016 18.3 0.1 0.0069 16.2 0.0 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TOBE_2 PF08402.5 gi|327310652|ref|YP_004337549.1| - 0.0035 17.3 0.4 0.0098 15.8 0.3 1.8 1 0 0 1 1 1 1 TOBE domain AAA_22 PF13401.1 gi|327310652|ref|YP_004337549.1| - 0.0052 16.9 0.0 0.071 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|327310652|ref|YP_004337549.1| - 0.021 14.7 0.9 0.11 12.4 0.7 2.1 1 1 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|327310652|ref|YP_004337549.1| - 0.042 14.3 0.0 0.092 13.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein DUF258 PF03193.11 gi|327310652|ref|YP_004337549.1| - 0.045 12.9 0.0 0.068 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|327310652|ref|YP_004337549.1| - 0.047 12.2 0.0 9 4.7 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|327310652|ref|YP_004337549.1| - 0.059 12.7 0.0 0.58 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|327310652|ref|YP_004337549.1| - 0.069 13.4 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|327310652|ref|YP_004337549.1| - 0.084 12.2 0.0 0.3 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|327310652|ref|YP_004337549.1| - 0.096 12.5 0.2 0.33 10.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|327310652|ref|YP_004337549.1| - 0.099 11.6 0.0 0.37 9.7 0.0 1.8 1 1 1 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|327310652|ref|YP_004337549.1| - 0.11 12.2 0.2 0.5 10.1 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|327310652|ref|YP_004337549.1| - 0.13 11.9 0.2 0.37 10.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_29 PF13555.1 gi|327310652|ref|YP_004337549.1| - 0.16 11.5 0.0 0.38 10.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Tricorn_C1 PF14684.1 gi|327310653|ref|YP_004337550.1| - 1e-30 105.4 1.1 1.8e-30 104.5 0.8 1.5 1 0 0 1 1 1 1 Tricorn protease C1 domain Tricorn_PDZ PF14685.1 gi|327310653|ref|YP_004337550.1| - 1.3e-23 82.5 0.0 2.5e-23 81.6 0.0 1.5 1 0 0 1 1 1 1 Tricorn protease PDZ domain Peptidase_S41 PF03572.13 gi|327310653|ref|YP_004337550.1| - 2.7e-22 78.9 0.0 5.7e-22 77.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase family S41 PD40 PF07676.7 gi|327310653|ref|YP_004337550.1| - 8.7e-14 50.8 13.2 8.4e-05 22.1 0.1 7.7 8 0 0 8 8 8 3 WD40-like Beta Propeller Repeat DPPIV_N PF00930.16 gi|327310653|ref|YP_004337550.1| - 0.00034 19.2 0.0 19 3.6 0.0 5.3 4 2 2 6 6 6 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region PQQ_3 PF13570.1 gi|327310653|ref|YP_004337550.1| - 0.012 15.8 0.1 0.012 15.8 0.1 5.3 6 0 0 6 6 6 0 PQQ-like domain Acylphosphatase PF00708.13 gi|327310654|ref|YP_004337551.1| - 1.9e-27 95.1 0.1 2.2e-27 94.9 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase Methyltransf_11 PF08241.7 gi|327310655|ref|YP_004337552.1| - 2.8e-18 66.1 0.0 4e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|327310655|ref|YP_004337552.1| - 1.2e-14 54.3 0.0 1.5e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327310655|ref|YP_004337552.1| - 1.1e-13 51.4 0.0 1.8e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310655|ref|YP_004337552.1| - 3.3e-11 43.7 0.0 6.9e-11 42.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|327310655|ref|YP_004337552.1| - 3.9e-09 35.9 0.0 5.1e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|327310655|ref|YP_004337552.1| - 1.1e-08 34.7 0.0 2e-08 33.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|327310655|ref|YP_004337552.1| - 3.4e-06 27.3 0.0 5.5e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|327310655|ref|YP_004337552.1| - 1.8e-05 24.7 0.4 8.4e-05 22.5 0.3 1.9 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|327310655|ref|YP_004337552.1| - 0.00087 18.8 0.0 0.0014 18.1 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|327310655|ref|YP_004337552.1| - 0.0045 16.0 0.0 0.0073 15.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|327310655|ref|YP_004337552.1| - 0.019 14.3 0.0 0.091 12.1 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase small domain NodS PF05401.6 gi|327310655|ref|YP_004337552.1| - 0.023 14.1 0.0 0.035 13.5 0.0 1.3 1 1 0 1 1 1 0 Nodulation protein S (NodS) CMAS PF02353.15 gi|327310655|ref|YP_004337552.1| - 0.027 13.5 0.0 0.038 13.0 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|327310655|ref|YP_004337552.1| - 0.05 13.2 0.0 0.062 12.9 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.21 gi|327310655|ref|YP_004337552.1| - 0.083 12.4 0.1 1.2 8.6 0.1 2.2 1 1 0 1 1 1 0 Zinc-binding dehydrogenase TPMT PF05724.6 gi|327310655|ref|YP_004337552.1| - 0.14 11.5 0.0 0.39 10.1 0.0 1.8 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) 3HCDH_N PF02737.13 gi|327310655|ref|YP_004337552.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AAA_25 PF13481.1 gi|327310656|ref|YP_004337553.1| - 1.3e-12 47.5 2.7 8.1e-08 31.8 0.3 3.3 2 2 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|327310656|ref|YP_004337553.1| - 2.2e-12 46.5 0.0 6e-09 35.3 0.0 2.9 2 1 0 2 2 2 2 KaiC AAA_22 PF13401.1 gi|327310656|ref|YP_004337553.1| - 2.1e-06 27.9 0.0 6.8e-06 26.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|327310656|ref|YP_004337553.1| - 9.5e-06 25.2 0.1 5.1e-05 22.9 0.0 2.3 3 0 0 3 3 2 1 Part of AAA domain AAA PF00004.24 gi|327310656|ref|YP_004337553.1| - 3.9e-05 23.8 0.0 8.6e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) GvpD PF07088.6 gi|327310656|ref|YP_004337553.1| - 6.5e-05 21.4 0.1 0.004 15.5 0.0 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein NACHT PF05729.7 gi|327310656|ref|YP_004337553.1| - 0.00024 20.8 0.0 0.00049 19.7 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|327310656|ref|YP_004337553.1| - 0.00049 20.9 0.0 0.0013 19.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|327310656|ref|YP_004337553.1| - 0.0015 17.6 0.0 0.011 14.8 0.0 2.2 3 0 0 3 3 3 1 recA bacterial DNA recombination protein AAA_16 PF13191.1 gi|327310656|ref|YP_004337553.1| - 0.0045 16.9 0.0 0.012 15.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_11 PF13086.1 gi|327310656|ref|YP_004337553.1| - 0.0047 16.5 0.0 0.0093 15.5 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|327310656|ref|YP_004337553.1| - 0.0065 16.8 0.1 0.013 15.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|327310656|ref|YP_004337553.1| - 0.011 14.7 0.0 0.92 8.3 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|327310656|ref|YP_004337553.1| - 0.013 15.7 0.0 0.057 13.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|327310656|ref|YP_004337553.1| - 0.014 15.2 0.0 0.043 13.7 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|327310656|ref|YP_004337553.1| - 0.018 14.7 0.0 0.052 13.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|327310656|ref|YP_004337553.1| - 0.027 14.3 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|327310656|ref|YP_004337553.1| - 0.048 13.2 0.0 0.14 11.6 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|327310656|ref|YP_004337553.1| - 0.054 12.9 0.1 0.97 8.8 0.0 2.5 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|327310656|ref|YP_004337553.1| - 0.062 12.7 0.0 0.082 12.3 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain Arch_ATPase PF01637.13 gi|327310656|ref|YP_004337553.1| - 0.064 12.9 0.0 0.18 11.4 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase PhoH PF02562.11 gi|327310656|ref|YP_004337553.1| - 0.089 12.0 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_28 PF13521.1 gi|327310656|ref|YP_004337553.1| - 0.097 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|327310656|ref|YP_004337553.1| - 0.12 11.4 0.0 0.29 10.1 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus DUF2299 PF10061.4 gi|327310657|ref|YP_004337554.1| - 3.6e-43 146.3 0.0 4e-43 146.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) ADH_N PF08240.7 gi|327310658|ref|YP_004337555.1| - 1.7e-24 85.6 0.0 2.9e-24 84.9 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|327310658|ref|YP_004337555.1| - 8.4e-15 54.4 0.6 6.2e-14 51.6 0.4 2.2 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|327310658|ref|YP_004337555.1| - 5.3e-09 37.0 0.3 9.5e-09 36.2 0.2 1.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|327310658|ref|YP_004337555.1| - 0.00018 21.6 0.0 0.00029 20.9 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TP_methylase PF00590.15 gi|327310658|ref|YP_004337555.1| - 0.014 15.0 0.5 0.022 14.4 0.3 1.2 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases NAD_binding_7 PF13241.1 gi|327310658|ref|YP_004337555.1| - 0.065 13.4 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|327310659|ref|YP_004337556.1| - 3.1e-05 23.8 0.2 0.097 12.4 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|327310659|ref|YP_004337556.1| - 0.0074 16.1 0.0 0.015 15.1 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|327310659|ref|YP_004337556.1| - 0.012 14.5 0.0 0.02 13.8 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein RHH_1 PF01402.16 gi|327310660|ref|YP_004337557.1| - 3.8e-08 32.8 0.4 4.4e-08 32.6 0.3 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|327310660|ref|YP_004337557.1| - 0.013 15.2 0.2 0.094 12.4 0.1 1.9 1 1 0 1 1 1 0 Ribbon-helix-helix domain EamA PF00892.15 gi|327310661|ref|YP_004337558.1| - 3.3e-16 59.4 22.4 8.7e-10 38.7 4.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|327310661|ref|YP_004337558.1| - 0.00096 19.3 1.8 0.00096 19.3 1.2 3.5 1 1 2 3 3 3 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|327310661|ref|YP_004337558.1| - 0.0044 16.8 0.8 1 9.2 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised protein family UPF0546 DUF486 PF04342.7 gi|327310661|ref|YP_004337558.1| - 0.11 12.5 1.4 0.22 11.6 0.1 2.2 2 1 1 3 3 3 0 Protein of unknown function, DUF486 MFS_1 PF07690.11 gi|327310663|ref|YP_004337560.1| - 3.6e-07 29.2 49.2 3.6e-07 29.2 34.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily UPF0020 PF01170.13 gi|327310664|ref|YP_004337561.1| - 6.7e-22 77.9 0.0 9.5e-22 77.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|327310664|ref|YP_004337561.1| - 3.9e-13 49.4 0.6 7.9e-13 48.4 0.4 1.5 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|327310664|ref|YP_004337561.1| - 3.2e-09 36.8 0.0 5e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 THUMP domain MTS PF05175.9 gi|327310664|ref|YP_004337561.1| - 4.4e-06 26.1 0.0 6.7e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|327310664|ref|YP_004337561.1| - 0.00014 21.5 0.0 0.00023 20.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|327310664|ref|YP_004337561.1| - 0.0077 15.3 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.10 gi|327310664|ref|YP_004337561.1| - 0.014 14.7 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|327310664|ref|YP_004337561.1| - 0.024 14.9 0.0 0.042 14.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310664|ref|YP_004337561.1| - 0.027 15.0 0.0 0.15 12.6 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain DUF401 PF04165.7 gi|327310665|ref|YP_004337562.1| - 3.1e-58 197.6 14.7 3.8e-58 197.3 10.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) Acetyltransf_1 PF00583.19 gi|327310665|ref|YP_004337562.1| - 0.016 15.2 0.1 1 9.4 0.0 2.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family T2SE PF00437.15 gi|327310666|ref|YP_004337563.1| - 2.3e-13 49.6 0.0 3.7e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|327310666|ref|YP_004337563.1| - 4.3e-07 30.7 0.0 1.9e-06 28.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|327310666|ref|YP_004337563.1| - 4.2e-05 23.8 0.0 0.00011 22.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|327310666|ref|YP_004337563.1| - 0.00015 21.4 0.0 0.00046 19.8 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|327310666|ref|YP_004337563.1| - 0.00016 21.6 0.0 0.00034 20.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327310666|ref|YP_004337563.1| - 0.00041 20.3 0.0 0.0013 18.7 0.0 1.9 2 0 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|327310666|ref|YP_004337563.1| - 0.00061 19.9 0.0 0.0017 18.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|327310666|ref|YP_004337563.1| - 0.00092 19.2 0.0 0.0021 18.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|327310666|ref|YP_004337563.1| - 0.00094 19.3 0.0 0.0025 18.0 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|327310666|ref|YP_004337563.1| - 0.0012 18.7 0.0 0.0087 15.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|327310666|ref|YP_004337563.1| - 0.0013 18.0 0.0 0.0027 17.1 0.0 1.5 1 0 0 1 1 1 1 Thymidylate kinase IstB_IS21 PF01695.12 gi|327310666|ref|YP_004337563.1| - 0.0018 17.6 0.0 0.003 16.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|327310666|ref|YP_004337563.1| - 0.0023 17.3 0.5 0.017 14.5 0.1 2.5 2 1 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|327310666|ref|YP_004337563.1| - 0.0033 17.0 0.0 0.007 15.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 RuvB_N PF05496.7 gi|327310666|ref|YP_004337563.1| - 0.0037 16.3 0.0 0.0074 15.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|327310666|ref|YP_004337563.1| - 0.0037 16.9 0.0 0.021 14.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|327310666|ref|YP_004337563.1| - 0.0065 16.7 0.0 0.017 15.4 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_30 PF13604.1 gi|327310666|ref|YP_004337563.1| - 0.0065 16.0 0.0 0.014 15.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|327310666|ref|YP_004337563.1| - 0.0071 15.9 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein KTI12 PF08433.5 gi|327310666|ref|YP_004337563.1| - 0.0075 15.5 0.0 0.051 12.7 0.0 2.1 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_10 PF12846.2 gi|327310666|ref|YP_004337563.1| - 0.0076 15.7 0.0 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 AAA-like domain Zeta_toxin PF06414.7 gi|327310666|ref|YP_004337563.1| - 0.0095 15.0 0.0 0.022 13.8 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin Sigma54_activ_2 PF14532.1 gi|327310666|ref|YP_004337563.1| - 0.011 15.8 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|327310666|ref|YP_004337563.1| - 0.012 15.3 0.1 0.056 13.1 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_23 PF13476.1 gi|327310666|ref|YP_004337563.1| - 0.021 15.1 0.0 0.037 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|327310666|ref|YP_004337563.1| - 0.021 15.0 0.0 0.064 13.4 0.0 1.8 2 0 0 2 2 1 0 RNA helicase NACHT PF05729.7 gi|327310666|ref|YP_004337563.1| - 0.032 13.9 0.0 0.063 12.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|327310666|ref|YP_004337563.1| - 0.035 13.6 0.0 0.067 12.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|327310666|ref|YP_004337563.1| - 0.035 12.8 0.0 0.065 12.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein SRP54 PF00448.17 gi|327310666|ref|YP_004337563.1| - 0.05 13.0 0.0 0.084 12.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KaiC PF06745.8 gi|327310666|ref|YP_004337563.1| - 0.071 12.2 0.0 0.17 10.9 0.0 1.6 1 0 0 1 1 1 0 KaiC Mg_chelatase PF01078.16 gi|327310666|ref|YP_004337563.1| - 0.084 12.0 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|327310666|ref|YP_004337563.1| - 0.088 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Sigma54_activat PF00158.21 gi|327310666|ref|YP_004337563.1| - 0.14 11.5 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Rad17 PF03215.10 gi|327310666|ref|YP_004337563.1| - 0.19 10.3 0.0 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein KaiC PF06745.8 gi|327310667|ref|YP_004337564.1| - 3.8e-70 235.5 0.0 4.4e-70 235.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|327310667|ref|YP_004337564.1| - 4.6e-08 32.6 0.0 8e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|327310667|ref|YP_004337564.1| - 0.00019 19.8 0.2 0.12 10.6 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.10 gi|327310667|ref|YP_004337564.1| - 0.012 14.4 0.0 0.017 14.0 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Rad51 PF08423.6 gi|327310667|ref|YP_004337564.1| - 0.13 11.1 0.0 0.24 10.2 0.0 1.4 1 0 0 1 1 1 0 Rad51 AAA_22 PF13401.1 gi|327310667|ref|YP_004337564.1| - 0.13 12.3 0.0 0.31 11.1 0.0 1.7 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|327310668|ref|YP_004337565.1| - 2.2e-31 109.4 0.0 3.2e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|327310668|ref|YP_004337565.1| - 5.9e-22 78.4 0.0 2.6e-21 76.3 0.0 1.8 1 1 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|327310668|ref|YP_004337565.1| - 2e-09 37.2 0.1 0.0011 18.5 0.0 2.6 2 1 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|327310668|ref|YP_004337565.1| - 5.3e-09 35.1 0.0 2.1e-06 26.6 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|327310668|ref|YP_004337565.1| - 1.3e-06 27.0 0.3 0.005 15.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|327310668|ref|YP_004337565.1| - 4.7e-05 22.9 0.0 0.011 15.2 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) HAS-barrel PF09378.5 gi|327310668|ref|YP_004337565.1| - 0.00011 22.0 0.1 0.0003 20.6 0.0 1.8 1 0 0 1 1 1 1 HAS barrel domain T4SS-DNA_transf PF02534.9 gi|327310668|ref|YP_004337565.1| - 0.00013 20.6 0.0 0.0002 20.0 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer ResIII PF04851.10 gi|327310668|ref|YP_004337565.1| - 0.0011 18.8 0.0 0.0057 16.4 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit CbiA PF01656.18 gi|327310668|ref|YP_004337565.1| - 0.0063 15.9 0.0 0.052 12.9 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.1 gi|327310668|ref|YP_004337565.1| - 0.0071 16.0 0.3 0.028 14.1 0.2 2.0 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|327310668|ref|YP_004337565.1| - 0.0072 15.8 0.0 0.071 12.6 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|327310668|ref|YP_004337565.1| - 0.018 15.1 0.0 1.5 8.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|327310668|ref|YP_004337565.1| - 0.03 14.0 0.0 0.062 13.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|327310668|ref|YP_004337565.1| - 0.04 14.1 0.0 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) LigB PF02900.13 gi|327310668|ref|YP_004337565.1| - 0.065 12.2 0.0 0.14 11.1 0.0 1.5 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase AAA_26 PF13500.1 gi|327310668|ref|YP_004337565.1| - 0.12 12.0 0.0 0.28 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Metallophos_2 PF12850.2 gi|327310669|ref|YP_004337566.1| - 1.8e-11 44.0 0.0 3.2e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|327310669|ref|YP_004337566.1| - 6.3e-11 42.0 0.0 1.1e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF2379 PF09543.5 gi|327310669|ref|YP_004337566.1| - 0.025 14.5 0.4 0.057 13.3 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2379) SMC_N PF02463.14 gi|327310670|ref|YP_004337567.1| - 1.8e-21 76.4 0.0 9.5e-21 74.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|327310670|ref|YP_004337567.1| - 1.7e-19 69.7 1.5 3.6e-10 39.0 0.0 3.2 3 0 0 3 3 3 3 AAA domain AAA_23 PF13476.1 gi|327310670|ref|YP_004337567.1| - 2.1e-19 70.6 18.0 2.7e-19 70.3 0.0 3.8 2 2 0 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|327310670|ref|YP_004337567.1| - 1.3e-12 48.2 0.0 7e-05 22.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|327310670|ref|YP_004337567.1| - 5.1e-09 36.5 0.3 0.0034 17.6 0.0 3.7 3 1 0 3 3 3 2 ABC transporter AAA_27 PF13514.1 gi|327310670|ref|YP_004337567.1| - 2.9e-07 28.6 65.9 0.014 13.1 0.8 4.4 3 1 1 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|327310670|ref|YP_004337567.1| - 1.2e-06 27.9 0.0 2e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|327310670|ref|YP_004337567.1| - 1.3e-05 24.4 0.0 0.00084 18.4 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.1 gi|327310670|ref|YP_004337567.1| - 2.7e-05 24.0 0.2 0.0001 22.1 0.0 2.1 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit GAS PF13851.1 gi|327310670|ref|YP_004337567.1| - 5.1e-05 22.5 47.1 0.00017 20.8 5.7 4.0 3 1 1 4 4 4 2 Growth-arrest specific micro-tubule binding Rad50_zn_hook PF04423.9 gi|327310670|ref|YP_004337567.1| - 0.00084 18.7 0.3 0.00084 18.7 0.2 3.4 2 0 0 2 2 1 1 Rad50 zinc hook motif IncA PF04156.9 gi|327310670|ref|YP_004337567.1| - 0.0025 17.4 54.0 0.12 11.9 13.7 3.7 2 1 1 3 3 3 2 IncA protein CENP-F_leu_zip PF10473.4 gi|327310670|ref|YP_004337567.1| - 0.0031 17.3 54.6 0.089 12.6 9.6 3.8 2 1 1 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.3 gi|327310670|ref|YP_004337567.1| - 0.0051 14.2 45.3 0.017 12.4 3.6 3.8 3 1 1 4 4 4 2 Protein of unknown function (DUF3584) Arch_ATPase PF01637.13 gi|327310670|ref|YP_004337567.1| - 0.014 15.0 5.3 0.023 14.4 0.0 3.1 3 0 0 3 3 2 0 Archaeal ATPase AAA_22 PF13401.1 gi|327310670|ref|YP_004337567.1| - 0.017 15.2 2.3 0.25 11.5 0.0 3.7 3 1 0 3 3 2 0 AAA domain Reo_sigmaC PF04582.7 gi|327310670|ref|YP_004337567.1| - 0.02 14.1 0.4 4.6 6.3 0.0 2.9 2 1 1 3 3 3 0 Reovirus sigma C capsid protein DUF258 PF03193.11 gi|327310670|ref|YP_004337567.1| - 0.02 14.0 0.0 0.044 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|327310670|ref|YP_004337567.1| - 0.038 14.1 0.0 0.21 11.8 0.0 2.2 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) DUF3407 PF11887.3 gi|327310670|ref|YP_004337567.1| - 0.056 12.7 0.1 8.5 5.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3407) IFT57 PF10498.4 gi|327310670|ref|YP_004337567.1| - 0.06 12.0 19.9 0.048 12.3 0.6 2.9 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 DUF1664 PF07889.7 gi|327310670|ref|YP_004337567.1| - 0.092 12.5 10.5 16 5.2 0.3 5.0 3 2 1 5 5 5 0 Protein of unknown function (DUF1664) Occludin_ELL PF07303.8 gi|327310670|ref|YP_004337567.1| - 0.14 12.8 26.6 0.36 11.5 1.1 5.1 2 2 3 5 5 5 0 Occludin homology domain DNA_ligase_ZBD PF03119.11 gi|327310670|ref|YP_004337567.1| - 0.15 11.7 0.4 0.61 9.8 0.3 2.2 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain TPR_MLP1_2 PF07926.7 gi|327310670|ref|YP_004337567.1| - 0.17 11.6 45.5 1.1 9.0 8.8 4.9 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein DUF4200 PF13863.1 gi|327310670|ref|YP_004337567.1| - 0.47 10.3 61.9 0.83 9.6 7.7 5.3 2 2 3 5 5 5 0 Domain of unknown function (DUF4200) Sec8_exocyst PF04048.9 gi|327310670|ref|YP_004337567.1| - 0.49 10.0 12.0 1.9 8.1 0.5 3.9 3 1 2 5 5 4 0 Sec8 exocyst complex component specific domain AAA_25 PF13481.1 gi|327310670|ref|YP_004337567.1| - 0.55 9.5 0.0 0.55 9.5 0.0 3.8 3 1 0 3 3 3 0 AAA domain ABC_ATPase PF09818.4 gi|327310670|ref|YP_004337567.1| - 0.61 8.6 6.3 1.3 7.5 0.0 3.1 3 0 0 3 3 2 0 Predicted ATPase of the ABC class Fib_alpha PF08702.5 gi|327310670|ref|YP_004337567.1| - 0.78 9.8 9.9 1.8 8.6 0.3 3.4 2 1 0 3 3 3 0 Fibrinogen alpha/beta chain family Spc7 PF08317.6 gi|327310670|ref|YP_004337567.1| - 0.93 8.0 34.8 0.45 9.1 3.5 3.4 2 1 1 3 3 3 0 Spc7 kinetochore protein APG6 PF04111.7 gi|327310670|ref|YP_004337567.1| - 2 7.4 52.1 0.59 9.1 4.7 4.5 2 2 3 5 5 5 0 Autophagy protein Apg6 STAT_alpha PF01017.15 gi|327310670|ref|YP_004337567.1| - 2.2 7.9 11.9 1.6 8.3 0.7 3.4 2 1 1 3 3 3 0 STAT protein, all-alpha domain BLOC1_2 PF10046.4 gi|327310670|ref|YP_004337567.1| - 2.3 8.4 18.6 5.8 7.1 0.2 5.0 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin-6_N PF09177.6 gi|327310670|ref|YP_004337567.1| - 3.1 8.2 26.9 0.92 9.9 1.5 5.2 2 2 3 5 5 5 0 Syntaxin 6, N-terminal DUF972 PF06156.8 gi|327310670|ref|YP_004337567.1| - 3.3 8.0 31.5 2.3 8.6 1.4 5.0 2 2 2 4 4 4 0 Protein of unknown function (DUF972) Laminin_II PF06009.7 gi|327310670|ref|YP_004337567.1| - 3.4 7.4 22.2 7.4 6.3 1.3 4.8 2 2 2 4 4 4 0 Laminin Domain II Tropomyosin_1 PF12718.2 gi|327310670|ref|YP_004337567.1| - 4.3 7.1 65.6 1.6 8.5 5.5 4.4 2 2 1 4 4 4 0 Tropomyosin like KxDL PF10241.4 gi|327310670|ref|YP_004337567.1| - 5.2 7.0 15.7 1.8 8.5 0.4 4.5 2 1 2 4 4 3 0 Uncharacterized conserved protein Lectin_N PF03954.9 gi|327310670|ref|YP_004337567.1| - 7.3 5.9 9.7 1.3 8.4 0.2 3.2 3 1 0 3 3 3 0 Hepatic lectin, N-terminal domain Syntaxin PF00804.20 gi|327310670|ref|YP_004337567.1| - 7.6 6.7 25.2 0.94 9.6 1.2 4.7 1 1 2 4 4 4 0 Syntaxin V_ATPase_I PF01496.14 gi|327310670|ref|YP_004337567.1| - 8 4.1 29.8 1.9 6.2 4.1 3.3 2 1 1 3 3 3 0 V-type ATPase 116kDa subunit family FlaC_arch PF05377.6 gi|327310670|ref|YP_004337567.1| - 8.2 6.4 17.8 28 4.7 1.2 5.8 5 1 1 6 6 6 0 Flagella accessory protein C (FlaC) Mnd1 PF03962.10 gi|327310670|ref|YP_004337567.1| - 9 5.9 45.5 1.5 8.4 3.9 4.5 2 2 2 4 4 4 0 Mnd1 family Prefoldin_2 PF01920.15 gi|327310670|ref|YP_004337567.1| - 9.2 6.0 44.0 3.3 7.5 0.2 7.0 3 2 2 5 5 5 0 Prefoldin subunit eRF1_2 PF03464.10 gi|327310671|ref|YP_004337568.1| - 4.5e-30 104.7 0.0 8.8e-30 103.7 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_1 PF03463.10 gi|327310671|ref|YP_004337568.1| - 4.3e-17 61.9 0.0 6.8e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|327310671|ref|YP_004337568.1| - 3e-11 43.5 2.8 4.9e-10 39.6 2.0 2.7 1 1 0 1 1 1 1 eRF1 domain 3 Ribosomal_L7Ae PF01248.21 gi|327310671|ref|YP_004337568.1| - 0.047 13.2 0.1 0.13 11.7 0.1 1.8 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF1624 PF07786.7 gi|327310673|ref|YP_004337570.1| - 0.082 12.2 3.2 0.09 12.1 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1624) Hemerythrin PF01814.18 gi|327310674|ref|YP_004337571.1| - 2.8e-22 79.3 0.0 4.1e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain DUF374 PF04028.8 gi|327310674|ref|YP_004337571.1| - 0.049 12.8 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF374) DUF1122 PF06557.6 gi|327310675|ref|YP_004337572.1| - 8.7e-33 112.8 0.0 1.1e-32 112.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Aldo_ket_red PF00248.16 gi|327310676|ref|YP_004337573.1| - 4.9e-52 176.5 0.0 5.9e-52 176.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_23 PF13384.1 gi|327310676|ref|YP_004337573.1| - 0.038 13.6 0.1 0.12 12.0 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain DUF2984 PF11203.3 gi|327310677|ref|YP_004337574.1| - 0.00019 21.5 0.3 0.0002 21.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2984) Nitrate_red_del PF02613.10 gi|327310677|ref|YP_004337574.1| - 0.003 17.4 0.0 0.0032 17.3 0.0 1.0 1 0 0 1 1 1 1 Nitrate reductase delta subunit YbjQ_1 PF01906.12 gi|327310678|ref|YP_004337575.1| - 8.6e-36 122.5 0.3 9.7e-36 122.3 0.2 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.3 gi|327310678|ref|YP_004337575.1| - 0.089 12.9 0.0 0.5 10.5 0.0 2.0 2 0 0 2 2 2 0 Selenium binding protein Frigida PF07899.6 gi|327310679|ref|YP_004337576.1| - 0.00062 18.6 0.0 0.00067 18.5 0.0 1.1 1 0 0 1 1 1 1 Frigida-like protein DUF3618 PF12277.3 gi|327310679|ref|YP_004337576.1| - 1.2 9.2 6.2 2.5 8.2 3.4 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3618) CoA_binding_2 PF13380.1 gi|327310680|ref|YP_004337577.1| - 1.6e-33 115.3 0.1 1.9e-33 115.0 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|327310680|ref|YP_004337577.1| - 5.1e-06 26.9 0.0 1.1e-05 25.8 0.0 1.5 2 0 0 2 2 2 1 CoA binding domain ATP-cone PF03477.11 gi|327310681|ref|YP_004337578.1| - 3.3e-09 37.0 1.9 3.7e-09 36.8 1.3 1.2 1 0 0 1 1 1 1 ATP cone domain Methyltransf_5 PF01795.14 gi|327310681|ref|YP_004337578.1| - 0.085 12.1 0.1 0.092 11.9 0.1 1.1 1 0 0 1 1 1 0 MraW methylase family MHCassoc_trimer PF08831.5 gi|327310681|ref|YP_004337578.1| - 0.13 12.1 0.1 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain Aconitase PF00330.15 gi|327310684|ref|YP_004337581.1| - 5e-135 450.5 0.0 7.1e-135 450.0 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|327310684|ref|YP_004337581.1| - 1.5e-36 125.3 0.0 2.4e-36 124.7 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Trypsin_2 PF13365.1 gi|327310685|ref|YP_004337582.1| - 5.3e-15 55.4 0.0 8.8e-15 54.7 0.0 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|327310685|ref|YP_004337582.1| - 2.1e-11 43.5 0.0 4.4e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|327310685|ref|YP_004337582.1| - 1e-10 41.6 0.0 2.2e-10 40.5 0.0 1.6 1 1 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|327310685|ref|YP_004337582.1| - 2e-08 34.2 0.0 7.8e-08 32.3 0.0 2.0 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S29 PF02907.10 gi|327310685|ref|YP_004337582.1| - 0.017 14.6 0.0 0.2 11.1 0.0 2.3 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease Peptidase_S46 PF10459.4 gi|327310685|ref|YP_004337582.1| - 0.019 13.3 0.3 0.029 12.7 0.2 1.1 1 0 0 1 1 1 0 Peptidase S46 XdhC_C PF13478.1 gi|327310686|ref|YP_004337583.1| - 1.6e-23 83.4 1.2 4.2e-23 82.1 0.8 1.7 1 1 0 1 1 1 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|327310686|ref|YP_004337583.1| - 0.014 14.5 0.1 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MoeA_N PF03453.12 gi|327310687|ref|YP_004337584.1| - 1.8e-52 176.9 0.0 2.8e-52 176.3 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|327310687|ref|YP_004337584.1| - 8e-27 93.4 0.2 1.3e-26 92.7 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|327310687|ref|YP_004337584.1| - 1.5e-16 60.0 1.5 2.8e-16 59.2 0.1 2.3 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) QueC PF06508.8 gi|327310688|ref|YP_004337585.1| - 3.6e-52 176.7 0.0 4.6e-52 176.3 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.1 gi|327310688|ref|YP_004337585.1| - 3.1e-15 55.9 0.0 7.7e-15 54.7 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|327310688|ref|YP_004337585.1| - 3.9e-13 49.5 0.0 1.4e-12 47.7 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.9 gi|327310688|ref|YP_004337585.1| - 2.2e-05 23.9 0.0 6.4e-05 22.4 0.0 1.7 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|327310688|ref|YP_004337585.1| - 0.0012 18.4 0.0 0.0031 17.0 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|327310688|ref|YP_004337585.1| - 0.0069 14.9 0.0 0.012 14.1 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|327310688|ref|YP_004337585.1| - 0.14 11.6 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 PP-loop family RVT_3 PF13456.1 gi|327310689|ref|YP_004337586.1| - 4.5e-24 84.0 0.2 6.4e-24 83.5 0.2 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|327310689|ref|YP_004337586.1| - 7.5e-12 45.7 0.0 1e-11 45.3 0.0 1.1 1 0 0 1 1 1 1 RNase H IF3_N PF05198.11 gi|327310689|ref|YP_004337586.1| - 0.027 14.3 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain DUF3721 PF12518.3 gi|327310689|ref|YP_004337586.1| - 0.1 12.1 0.3 0.41 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function PhageMin_Tail PF10145.4 gi|327310689|ref|YP_004337586.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Phage-related minor tail protein zinc_ribbon_2 PF13240.1 gi|327310690|ref|YP_004337587.1| - 3.4e-06 26.3 2.1 7.3e-06 25.3 1.5 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327310690|ref|YP_004337587.1| - 7.1e-06 25.0 2.1 1.4e-05 24.0 1.5 1.5 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327310690|ref|YP_004337587.1| - 8.1e-05 21.8 1.5 0.00011 21.4 0.4 1.6 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|327310690|ref|YP_004337587.1| - 0.0015 18.1 0.6 0.0071 16.0 0.4 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|327310690|ref|YP_004337587.1| - 0.0015 18.0 0.5 0.007 15.9 0.3 2.0 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|327310690|ref|YP_004337587.1| - 0.012 15.3 0.3 0.023 14.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-Di19 PF05605.7 gi|327310690|ref|YP_004337587.1| - 0.031 14.3 1.7 4.6 7.4 0.2 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-CHCC PF10276.4 gi|327310690|ref|YP_004337587.1| - 0.044 13.6 5.4 1.8 8.4 0.4 2.3 2 0 0 2 2 2 0 Zinc-finger domain Cys_rich_CPXG PF14255.1 gi|327310690|ref|YP_004337587.1| - 0.067 13.0 7.1 2.8 7.8 0.4 3.2 3 0 0 3 3 3 0 Cysteine-rich CPXCG PyrI_C PF02748.10 gi|327310690|ref|YP_004337587.1| - 0.079 12.4 2.5 3 7.3 0.0 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain UPF0547 PF10571.4 gi|327310690|ref|YP_004337587.1| - 0.086 12.5 1.7 4.5 7.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_S27e PF01667.12 gi|327310690|ref|YP_004337587.1| - 0.16 11.5 0.1 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 zf-ISL3 PF14690.1 gi|327310690|ref|YP_004337587.1| - 0.22 11.5 1.0 24 5.0 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|327310690|ref|YP_004337587.1| - 0.23 11.2 2.8 0.4 10.4 1.9 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon zf-BED PF02892.10 gi|327310690|ref|YP_004337587.1| - 0.23 11.2 0.6 15 5.4 0.1 2.3 1 1 1 2 2 2 0 BED zinc finger Prok-RING_1 PF14446.1 gi|327310690|ref|YP_004337587.1| - 0.25 11.1 0.8 0.51 10.1 0.6 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|327310690|ref|YP_004337587.1| - 1.9 8.3 4.2 21 5.0 0.2 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327310691|ref|YP_004337588.1| - 0.0035 16.7 3.4 0.018 14.4 1.9 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327310691|ref|YP_004337588.1| - 0.015 14.4 3.5 0.061 12.5 2.4 1.8 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|327310691|ref|YP_004337588.1| - 0.037 13.8 0.3 0.063 13.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon PyrI_C PF02748.10 gi|327310691|ref|YP_004337588.1| - 0.083 12.3 2.1 2.6 7.5 0.1 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C4_ClpX PF06689.8 gi|327310691|ref|YP_004337588.1| - 0.12 11.9 0.9 12 5.5 0.1 2.3 2 0 0 2 2 2 0 ClpX C4-type zinc finger zf-BED PF02892.10 gi|327310691|ref|YP_004337588.1| - 0.13 12.0 1.3 8.9 6.1 0.1 2.2 1 1 1 2 2 2 0 BED zinc finger DUF1451 PF07295.6 gi|327310691|ref|YP_004337588.1| - 0.18 11.5 0.2 0.33 10.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Prok-RING_1 PF14446.1 gi|327310691|ref|YP_004337588.1| - 0.24 11.1 0.9 0.37 10.5 0.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|327310691|ref|YP_004337588.1| - 0.36 10.3 2.4 18 4.9 1.6 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-CHCC PF10276.4 gi|327310691|ref|YP_004337588.1| - 0.88 9.4 4.6 4.6 7.1 0.1 2.6 1 1 1 2 2 2 0 Zinc-finger domain YtpI PF14007.1 gi|327310692|ref|YP_004337589.1| - 0.65 9.9 7.2 0.36 10.7 2.6 2.0 1 1 1 2 2 2 0 YtpI-like protein Band_7_1 PF13421.1 gi|327310693|ref|YP_004337590.1| - 9.1e-30 103.7 0.0 1.4e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family zf-ribbon_3 PF13248.1 gi|327310693|ref|YP_004337590.1| - 8.8e-17 59.7 18.7 2.2e-08 33.0 3.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Band_7 PF01145.20 gi|327310693|ref|YP_004337590.1| - 6.5e-15 55.4 0.0 9.5e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family zinc_ribbon_2 PF13240.1 gi|327310693|ref|YP_004337590.1| - 1.6e-14 52.8 16.1 6.9e-08 31.7 3.5 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|327310693|ref|YP_004337590.1| - 2.3e-13 49.7 14.7 3.3e-13 49.2 10.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|327310693|ref|YP_004337590.1| - 4.5e-06 25.6 8.5 0.00066 18.7 1.2 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zf-DHHC PF01529.15 gi|327310693|ref|YP_004337590.1| - 0.00059 19.2 6.4 0.15 11.4 0.9 2.2 1 1 1 2 2 2 2 DHHC palmitoyltransferase GYF PF02213.11 gi|327310693|ref|YP_004337590.1| - 0.012 15.1 0.1 0.026 14.0 0.1 1.5 1 0 0 1 1 1 0 GYF domain zf-B_box PF00643.19 gi|327310693|ref|YP_004337590.1| - 0.058 13.3 5.2 0.48 10.3 0.6 2.2 2 0 0 2 2 2 0 B-box zinc finger DUF2719 PF10891.3 gi|327310693|ref|YP_004337590.1| - 0.062 12.9 2.6 1.3 8.7 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2719) Nudix_N_2 PF14803.1 gi|327310693|ref|YP_004337590.1| - 0.1 12.2 14.3 3 7.6 0.1 4.1 3 1 0 3 3 3 0 Nudix N-terminal PolC_DP2 PF03833.8 gi|327310693|ref|YP_004337590.1| - 0.28 8.8 3.8 0.36 8.4 2.7 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 UPF0547 PF10571.4 gi|327310693|ref|YP_004337590.1| - 0.83 9.3 18.9 8 6.2 3.9 3.5 1 1 2 3 3 3 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.3 gi|327310693|ref|YP_004337590.1| - 1.6 8.7 12.9 28 4.8 1.5 2.6 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) OrfB_Zn_ribbon PF07282.6 gi|327310693|ref|YP_004337590.1| - 5.4 6.7 8.6 13 5.5 0.1 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain IBR PF01485.16 gi|327310693|ref|YP_004337590.1| - 6.7 6.6 9.7 43 4.0 3.8 2.6 1 1 1 2 2 2 0 IBR domain zf-HIT PF04438.11 gi|327310693|ref|YP_004337590.1| - 9.2 6.0 10.9 2.3 7.9 1.4 2.9 3 0 0 3 3 3 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|327310693|ref|YP_004337590.1| - 9.6 5.7 9.0 13 5.3 1.8 3.3 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Pab87_oct PF13969.1 gi|327310694|ref|YP_004337591.1| - 0.031 14.3 0.1 0.071 13.2 0.0 1.7 1 1 1 2 2 2 0 Pab87 octamerisation domain GHMP_kinases_N PF00288.21 gi|327310695|ref|YP_004337592.1| - 8.4e-12 44.9 3.1 8.4e-12 44.9 2.2 2.5 3 1 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|327310695|ref|YP_004337592.1| - 4.2e-11 42.8 0.6 1.5e-10 41.0 0.4 1.9 1 0 0 1 1 1 1 GHMP kinases C terminal CcdA PF07362.7 gi|327310696|ref|YP_004337593.1| - 0.00015 21.5 0.3 0.00023 20.9 0.2 1.5 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|327310696|ref|YP_004337593.1| - 0.0011 18.7 3.2 0.0014 18.4 0.2 2.4 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|327310696|ref|YP_004337593.1| - 0.0038 16.9 0.8 0.02 14.6 0.0 2.4 2 1 1 3 3 3 1 Ribbon-helix-helix domain DUF4290 PF14123.1 gi|327310696|ref|YP_004337593.1| - 0.035 13.3 0.0 0.041 13.0 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) DUF488 PF04343.8 gi|327310697|ref|YP_004337594.1| - 2.1e-28 99.1 0.2 2.5e-28 98.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Glycos_transf_1 PF00534.15 gi|327310698|ref|YP_004337595.1| - 2e-26 92.4 0.0 3.1e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|327310698|ref|YP_004337595.1| - 3.3e-12 46.7 0.2 1.7e-11 44.3 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|327310698|ref|YP_004337595.1| - 9.5e-09 35.5 12.0 1.1e-08 35.4 4.1 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|327310698|ref|YP_004337595.1| - 2.7e-08 33.9 0.0 1.2e-07 31.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 AP_endonuc_2 PF01261.19 gi|327310698|ref|YP_004337595.1| - 0.0013 18.0 1.7 0.018 14.3 0.0 2.8 3 0 0 3 3 3 1 Xylose isomerase-like TIM barrel Glyco_transf_4 PF13439.1 gi|327310698|ref|YP_004337595.1| - 0.013 15.2 0.0 0.38 10.4 0.0 3.1 2 1 0 2 2 2 0 Glycosyltransferase Family 4 TM_helix PF05552.7 gi|327310699|ref|YP_004337596.1| - 0.0003 20.3 2.1 0.0003 20.3 1.5 2.9 3 0 0 3 3 3 1 Conserved TM helix Abhydrolase_9_N PF15420.1 gi|327310699|ref|YP_004337596.1| - 0.18 11.5 13.2 0.034 13.8 6.3 1.9 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus AAA_25 PF13481.1 gi|327310700|ref|YP_004337597.1| - 1.2e-09 37.8 0.0 3e-09 36.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|327310700|ref|YP_004337597.1| - 1.1e-07 32.0 0.0 9.4e-07 29.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|327310700|ref|YP_004337597.1| - 2e-06 28.0 0.0 3.8e-06 27.1 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|327310700|ref|YP_004337597.1| - 1e-05 26.3 0.0 2.1e-05 25.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327310700|ref|YP_004337597.1| - 1.8e-05 24.7 0.0 0.00011 22.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.1 gi|327310700|ref|YP_004337597.1| - 3.8e-05 23.3 0.0 8.2e-05 22.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|327310700|ref|YP_004337597.1| - 0.00013 21.6 0.0 0.00035 20.2 0.0 1.7 2 0 0 2 2 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|327310700|ref|YP_004337597.1| - 0.0004 20.1 0.0 0.0014 18.3 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase AAA_33 PF13671.1 gi|327310700|ref|YP_004337597.1| - 0.0005 19.9 0.2 0.022 14.6 0.1 2.4 1 1 1 2 2 2 1 AAA domain GvpD PF07088.6 gi|327310700|ref|YP_004337597.1| - 0.00059 18.2 0.0 0.27 9.5 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|327310700|ref|YP_004337597.1| - 0.0011 18.3 0.0 0.027 13.9 0.0 2.2 1 1 0 1 1 1 1 IstB-like ATP binding protein KaiC PF06745.8 gi|327310700|ref|YP_004337597.1| - 0.0026 16.8 0.1 0.088 11.9 0.0 2.4 1 1 1 2 2 2 1 KaiC Zeta_toxin PF06414.7 gi|327310700|ref|YP_004337597.1| - 0.0027 16.8 0.0 0.0043 16.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|327310700|ref|YP_004337597.1| - 0.004 17.4 0.0 0.0078 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|327310700|ref|YP_004337597.1| - 0.0042 17.4 0.0 0.0081 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|327310700|ref|YP_004337597.1| - 0.0044 16.9 0.0 0.0078 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|327310700|ref|YP_004337597.1| - 0.0072 15.9 0.0 0.0084 15.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|327310700|ref|YP_004337597.1| - 0.0088 15.1 0.0 0.015 14.3 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|327310700|ref|YP_004337597.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) CobU PF02283.11 gi|327310700|ref|YP_004337597.1| - 0.015 14.7 0.0 0.027 13.8 0.0 1.5 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_14 PF13173.1 gi|327310700|ref|YP_004337597.1| - 0.022 14.6 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|327310700|ref|YP_004337597.1| - 0.028 13.4 0.0 0.04 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|327310700|ref|YP_004337597.1| - 0.031 13.9 0.0 0.062 12.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Zot PF05707.7 gi|327310700|ref|YP_004337597.1| - 0.041 13.3 0.1 0.061 12.7 0.0 1.5 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) TIP49 PF06068.8 gi|327310700|ref|YP_004337597.1| - 0.048 12.3 0.0 0.073 11.7 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus AAA_13 PF13166.1 gi|327310700|ref|YP_004337597.1| - 0.059 11.8 0.0 0.079 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|327310700|ref|YP_004337597.1| - 0.066 12.6 0.0 0.2 11.0 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|327310700|ref|YP_004337597.1| - 0.083 11.7 0.0 0.15 10.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|327310700|ref|YP_004337597.1| - 0.084 13.0 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase RNA12 PF10443.4 gi|327310700|ref|YP_004337597.1| - 0.088 11.2 0.0 0.34 9.3 0.0 1.8 2 0 0 2 2 2 0 RNA12 protein Mg_chelatase PF01078.16 gi|327310700|ref|YP_004337597.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|327310700|ref|YP_004337597.1| - 0.11 11.7 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_29 PF13555.1 gi|327310700|ref|YP_004337597.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain CobA_CobO_BtuR PF02572.10 gi|327310700|ref|YP_004337597.1| - 0.14 11.7 0.1 6.3 6.3 0.0 2.5 3 0 0 3 3 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IPT PF01745.11 gi|327310700|ref|YP_004337597.1| - 0.15 11.2 0.0 0.36 9.9 0.0 1.6 2 0 0 2 2 2 0 Isopentenyl transferase DFP PF04127.10 gi|327310702|ref|YP_004337599.1| - 5.5e-49 166.2 0.0 1.4e-47 161.7 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|327310702|ref|YP_004337599.1| - 7.2e-25 87.1 0.3 1.3e-24 86.3 0.2 1.4 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|327310702|ref|YP_004337599.1| - 0.015 15.2 2.6 0.055 13.4 0.0 2.6 2 1 0 2 2 2 0 NADH(P)-binding Ank PF00023.25 gi|327310702|ref|YP_004337599.1| - 0.067 13.0 0.0 0.23 11.3 0.0 1.9 1 0 0 1 1 1 0 Ankyrin repeat zf-ribbon_3 PF13248.1 gi|327310703|ref|YP_004337600.1| - 7e-05 21.9 3.5 0.00013 21.0 2.4 1.5 1 1 0 1 1 1 1 zinc-ribbon domain CpXC PF14353.1 gi|327310703|ref|YP_004337600.1| - 0.00048 20.0 0.2 0.032 14.1 0.0 2.0 2 0 0 2 2 2 1 CpXC protein DZR PF12773.2 gi|327310703|ref|YP_004337600.1| - 0.0014 18.3 0.2 0.0022 17.7 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|327310703|ref|YP_004337600.1| - 0.0025 17.2 0.4 0.97 9.0 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DUF329 PF03884.9 gi|327310703|ref|YP_004337600.1| - 0.0032 17.0 0.2 0.0046 16.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF329) RPA_interact_C PF14768.1 gi|327310703|ref|YP_004337600.1| - 0.0092 16.3 0.0 0.011 16.1 0.0 1.1 1 0 0 1 1 1 1 Replication protein A interacting C-terminal OrfB_Zn_ribbon PF07282.6 gi|327310703|ref|YP_004337600.1| - 0.0099 15.5 0.2 0.016 14.8 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain BCA_ABC_TP_C PF12399.3 gi|327310703|ref|YP_004337600.1| - 0.011 15.3 0.1 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter Zn_Tnp_IS1595 PF12760.2 gi|327310703|ref|YP_004337600.1| - 0.011 15.5 4.5 1.2 9.0 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cys_rich_CPCC PF14206.1 gi|327310703|ref|YP_004337600.1| - 0.014 14.8 0.1 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC TF_Zn_Ribbon PF08271.7 gi|327310703|ref|YP_004337600.1| - 0.015 14.5 0.4 2.4 7.5 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding FYDLN_acid PF09538.5 gi|327310703|ref|YP_004337600.1| - 0.02 15.5 0.3 0.3 11.6 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) Zn-ribbon_8 PF09723.5 gi|327310703|ref|YP_004337600.1| - 0.024 14.6 3.4 1.1 9.2 2.5 2.4 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|327310703|ref|YP_004337600.1| - 0.035 13.6 0.2 0.036 13.5 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain Rubredoxin PF00301.15 gi|327310703|ref|YP_004337600.1| - 0.04 13.7 0.6 5.7 6.8 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin NOB1_Zn_bind PF08772.6 gi|327310703|ref|YP_004337600.1| - 0.044 13.6 0.3 0.46 10.3 0.2 2.0 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C3HC4_3 PF13920.1 gi|327310703|ref|YP_004337600.1| - 0.054 13.1 0.6 0.078 12.6 0.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-Sec23_Sec24 PF04810.10 gi|327310703|ref|YP_004337600.1| - 0.064 12.8 1.6 0.48 10.0 1.1 2.0 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger Prok-RING_4 PF14447.1 gi|327310703|ref|YP_004337600.1| - 0.072 12.6 0.4 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 zf-FPG_IleRS PF06827.9 gi|327310703|ref|YP_004337600.1| - 0.073 12.7 2.7 0.24 11.0 1.8 1.9 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS DUF2296 PF10058.4 gi|327310703|ref|YP_004337600.1| - 0.086 12.5 1.5 0.2 11.4 1.0 1.7 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) DUF35_N PF12172.3 gi|327310703|ref|YP_004337600.1| - 0.09 12.7 1.7 5.2 7.1 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2HC5 PF06221.8 gi|327310703|ref|YP_004337600.1| - 0.11 12.2 0.2 0.14 11.9 0.2 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-Di19 PF05605.7 gi|327310703|ref|YP_004337600.1| - 0.11 12.5 3.8 0.58 10.3 0.1 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding UPF0547 PF10571.4 gi|327310703|ref|YP_004337600.1| - 0.12 12.1 3.7 5.5 6.7 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Cys_rich_CPXG PF14255.1 gi|327310703|ref|YP_004337600.1| - 0.12 12.2 0.6 1.1 9.1 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-RING_5 PF14634.1 gi|327310703|ref|YP_004337600.1| - 0.14 11.8 0.9 0.22 11.2 0.6 1.3 1 0 0 1 1 1 0 zinc-RING finger domain zf-ISL3 PF14690.1 gi|327310703|ref|YP_004337600.1| - 0.15 12.1 2.7 3.3 7.8 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Mu-like_Com PF10122.4 gi|327310703|ref|YP_004337600.1| - 0.18 10.8 1.0 0.55 9.3 0.1 2.0 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF1936 PF09151.5 gi|327310703|ref|YP_004337600.1| - 0.2 11.1 2.2 7.5 6.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) TerY-C PF15616.1 gi|327310703|ref|YP_004337600.1| - 0.22 11.4 1.1 0.5 10.2 0.8 1.6 1 1 0 1 1 1 0 TerY-C metal binding domain Lar_restr_allev PF14354.1 gi|327310703|ref|YP_004337600.1| - 0.25 11.6 7.2 2.5 8.4 0.3 2.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|327310703|ref|YP_004337600.1| - 0.27 10.9 2.5 4.4 7.0 0.1 2.4 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2_4 PF13894.1 gi|327310703|ref|YP_004337600.1| - 0.34 11.3 2.7 6.4 7.3 0.2 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger DUF1610 PF07754.6 gi|327310703|ref|YP_004337600.1| - 0.34 11.0 4.6 3.8 7.7 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Prok-RING_1 PF14446.1 gi|327310703|ref|YP_004337600.1| - 0.36 10.5 2.8 15 5.4 0.0 2.1 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.7 gi|327310703|ref|YP_004337600.1| - 0.82 9.4 3.3 3.2 7.6 2.3 1.9 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_3 PF14369.1 gi|327310703|ref|YP_004337600.1| - 1.3 9.0 4.9 10 6.2 0.1 2.2 1 1 1 2 2 2 0 zinc-finger zf-NADH-PPase PF09297.6 gi|327310703|ref|YP_004337600.1| - 4.9 6.7 9.5 7 6.2 0.2 2.5 2 1 1 3 3 2 0 NADH pyrophosphatase zinc ribbon domain GTP_EFTU PF00009.22 gi|327310704|ref|YP_004337601.1| - 9.6e-55 184.9 0.0 1.5e-54 184.3 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|327310704|ref|YP_004337601.1| - 6.2e-32 109.6 0.1 2.6e-31 107.6 0.0 2.1 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|327310704|ref|YP_004337601.1| - 1.9e-23 82.0 0.2 3.7e-23 81.1 0.1 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|327310704|ref|YP_004337601.1| - 1.3e-20 73.0 0.0 3.2e-20 71.7 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|327310704|ref|YP_004337601.1| - 3.2e-16 59.1 0.3 7.6e-16 57.9 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|327310704|ref|YP_004337601.1| - 0.028 14.3 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase 3HCDH_N PF02737.13 gi|327310704|ref|YP_004337601.1| - 0.065 12.8 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HTH_19 PF12844.2 gi|327310705|ref|YP_004337602.1| - 0.08 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GATase PF00117.23 gi|327310706|ref|YP_004337603.1| - 4.1e-37 127.5 0.0 5.1e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|327310706|ref|YP_004337603.1| - 4.3e-12 45.9 0.0 3.4e-10 39.7 0.0 2.1 1 1 0 1 1 1 1 Peptidase C26 CPSase_sm_chain PF00988.17 gi|327310706|ref|YP_004337603.1| - 1.4e-10 40.7 0.0 2.1e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain Lyase_1 PF00206.15 gi|327310707|ref|YP_004337604.1| - 3.9e-41 141.2 0.0 5.5e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|327310707|ref|YP_004337604.1| - 0.00033 20.6 0.0 0.0011 18.9 0.0 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal RimK PF08443.6 gi|327310708|ref|YP_004337605.1| - 5.6e-55 185.7 0.0 6.8e-55 185.5 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|327310708|ref|YP_004337605.1| - 1e-20 74.2 0.0 1.4e-20 73.7 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|327310708|ref|YP_004337605.1| - 5.3e-14 51.7 0.0 7.7e-14 51.1 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|327310708|ref|YP_004337605.1| - 1.1e-13 50.6 0.0 1.6e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|327310708|ref|YP_004337605.1| - 7.2e-12 45.4 0.0 1.1e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|327310708|ref|YP_004337605.1| - 2.8e-08 33.3 0.0 7.8e-08 31.8 0.0 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|327310708|ref|YP_004337605.1| - 0.0018 17.5 0.0 0.024 13.8 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|327310708|ref|YP_004337605.1| - 0.003 16.9 0.0 0.02 14.2 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|327310708|ref|YP_004337605.1| - 0.0037 16.6 0.0 0.0073 15.6 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain TTL PF03133.10 gi|327310708|ref|YP_004337605.1| - 0.0062 15.4 0.0 0.031 13.1 0.0 1.8 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_ST PF14397.1 gi|327310708|ref|YP_004337605.1| - 0.027 13.5 0.0 0.055 12.5 0.0 1.5 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Dynactin PF12455.3 gi|327310709|ref|YP_004337606.1| - 0.069 12.0 0.0 0.069 12.0 0.0 1.1 1 0 0 1 1 1 0 Dynein associated protein TcdB_N PF12918.2 gi|327310709|ref|YP_004337606.1| - 0.14 12.2 1.2 0.46 10.5 0.4 1.9 1 1 1 2 2 2 0 TcdB toxin N-terminal helical domain RHH_1 PF01402.16 gi|327310709|ref|YP_004337606.1| - 0.96 9.4 6.5 1.2 9.1 0.0 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family tRNA-synt_2d PF01409.15 gi|327310710|ref|YP_004337607.1| - 3.1e-78 262.3 0.0 3.9e-78 262.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|327310710|ref|YP_004337607.1| - 7.4e-09 34.8 1.7 0.00061 18.6 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_27 PF13463.1 gi|327310710|ref|YP_004337607.1| - 0.0015 18.7 0.1 0.0051 17.1 0.1 2.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|327310710|ref|YP_004337607.1| - 0.0022 17.6 1.2 0.0022 17.6 0.8 3.2 3 0 0 3 3 3 1 MarR family HTH_Crp_2 PF13545.1 gi|327310710|ref|YP_004337607.1| - 0.0038 16.9 3.2 0.1 12.3 0.0 3.4 4 0 0 4 4 4 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|327310710|ref|YP_004337607.1| - 0.0058 16.3 5.4 0.007 16.1 0.8 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|327310710|ref|YP_004337607.1| - 0.0076 16.0 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_assoc_C PF09821.4 gi|327310710|ref|YP_004337607.1| - 0.035 14.3 0.0 0.086 13.1 0.0 1.7 1 0 0 1 1 1 0 C-terminal AAA-associated domain DUF1495 PF07381.6 gi|327310710|ref|YP_004337607.1| - 0.054 13.1 0.2 0.55 9.9 0.0 2.5 2 1 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) TrmB PF01978.14 gi|327310710|ref|YP_004337607.1| - 0.059 13.0 0.4 0.22 11.2 0.3 2.0 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|327310710|ref|YP_004337607.1| - 0.06 13.4 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator DUF2084 PF09857.4 gi|327310710|ref|YP_004337607.1| - 0.15 11.7 1.0 7 6.4 0.1 3.1 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2084) HTH_24 PF13412.1 gi|327310710|ref|YP_004337607.1| - 0.91 8.9 2.7 0.62 9.5 0.1 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding RHH_1 PF01402.16 gi|327310711|ref|YP_004337608.1| - 1.5e-07 31.0 0.6 2.6e-07 30.2 0.4 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|327310711|ref|YP_004337608.1| - 0.0018 18.4 0.4 0.0021 18.1 0.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) Acetyltransf_11 PF13720.1 gi|327310711|ref|YP_004337608.1| - 0.027 14.7 0.1 0.03 14.5 0.1 1.0 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Smoothelin PF12510.3 gi|327310711|ref|YP_004337608.1| - 0.13 12.1 5.5 1.3 8.9 0.4 2.3 1 1 1 2 2 2 0 Smoothelin cytoskeleton protein ATP-synt_ab PF00006.20 gi|327310712|ref|YP_004337609.1| - 3.1e-60 203.3 0.0 3.9e-60 203.0 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|327310712|ref|YP_004337609.1| - 6.2e-10 39.5 0.0 1e-09 38.8 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|327310712|ref|YP_004337609.1| - 1e-07 32.0 1.1 1e-07 32.0 0.8 1.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain P22_Tail-4 PF11650.3 gi|327310713|ref|YP_004337610.1| - 0.02 14.4 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 P22 tail accessory factor Rubrerythrin PF02915.12 gi|327310714|ref|YP_004337611.1| - 0.00063 20.0 0.8 0.0027 18.0 0.5 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|327310714|ref|YP_004337611.1| - 0.026 14.4 0.1 1.1 9.2 0.1 2.3 1 1 0 1 1 1 0 Ferritin-like domain HTH_3 PF01381.17 gi|327310714|ref|YP_004337611.1| - 0.076 12.8 0.0 0.26 11.1 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix Phenol_Hydrox PF02332.13 gi|327310714|ref|YP_004337611.1| - 0.11 11.8 0.1 0.33 10.2 0.1 1.7 1 1 1 2 2 2 0 Methane/Phenol/Toluene Hydroxylase HTH_31 PF13560.1 gi|327310714|ref|YP_004337611.1| - 0.12 12.5 0.3 0.12 12.5 0.2 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain Adeno_Penton_B PF01686.12 gi|327310714|ref|YP_004337611.1| - 0.13 10.5 0.0 0.17 10.0 0.0 1.1 1 0 0 1 1 1 0 Adenovirus penton base protein DUF2452 PF10504.4 gi|327310714|ref|YP_004337611.1| - 0.15 11.2 0.2 0.26 10.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2452) Spermine_synth PF01564.12 gi|327310715|ref|YP_004337612.1| - 3.9e-63 212.6 0.0 5.2e-63 212.2 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|327310715|ref|YP_004337612.1| - 2.3e-09 37.3 0.1 1.5e-08 34.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310715|ref|YP_004337612.1| - 3.9e-05 24.2 0.0 7.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327310715|ref|YP_004337612.1| - 8.8e-05 22.1 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327310715|ref|YP_004337612.1| - 0.00013 22.3 0.0 0.00025 21.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|327310715|ref|YP_004337612.1| - 0.00083 18.8 0.0 0.0015 17.9 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.1 gi|327310715|ref|YP_004337612.1| - 0.003 17.9 0.0 0.0075 16.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|327310715|ref|YP_004337612.1| - 0.0083 15.8 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Peptidase_S9 PF00326.16 gi|327310716|ref|YP_004337613.1| - 6.8e-38 130.0 0.0 9e-38 129.6 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|327310716|ref|YP_004337613.1| - 1.4e-14 54.5 3.6 6.5e-14 52.3 2.5 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|327310716|ref|YP_004337613.1| - 3.1e-14 52.9 0.0 6.8e-14 51.8 0.0 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|327310716|ref|YP_004337613.1| - 1.3e-09 37.8 0.0 2.9e-07 30.1 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.7 gi|327310716|ref|YP_004337613.1| - 3.2e-07 29.8 4.5 0.00042 19.9 0.0 4.8 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat LIP PF03583.9 gi|327310716|ref|YP_004337613.1| - 1.8e-06 27.3 0.1 0.027 13.6 0.0 3.1 3 0 0 3 3 3 2 Secretory lipase DLH PF01738.13 gi|327310716|ref|YP_004337613.1| - 0.00023 20.4 0.0 0.0038 16.5 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|327310716|ref|YP_004337613.1| - 0.00052 19.6 0.0 0.035 13.6 0.1 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|327310716|ref|YP_004337613.1| - 0.00085 18.9 0.4 0.017 14.7 0.3 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|327310716|ref|YP_004337613.1| - 0.0009 19.0 0.0 0.0027 17.5 0.0 1.8 1 0 0 1 1 1 1 Putative lysophospholipase Esterase PF00756.15 gi|327310716|ref|YP_004337613.1| - 0.0024 17.3 0.0 0.0052 16.2 0.0 1.6 1 0 0 1 1 1 1 Putative esterase DPPIV_N PF00930.16 gi|327310716|ref|YP_004337613.1| - 0.26 9.8 0.0 3.4 6.1 0.0 2.2 2 0 0 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF1610 PF07754.6 gi|327310717|ref|YP_004337614.1| - 1.2e-16 60.4 0.6 4.6e-10 39.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) TF_Zn_Ribbon PF08271.7 gi|327310717|ref|YP_004337614.1| - 3.7e-05 22.9 2.8 0.003 16.8 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|327310717|ref|YP_004337614.1| - 0.00027 20.5 1.0 0.00035 20.1 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|327310717|ref|YP_004337614.1| - 0.00032 20.2 1.0 0.00042 19.8 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327310717|ref|YP_004337614.1| - 0.0012 17.9 3.4 0.049 12.8 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Rubredoxin PF00301.15 gi|327310717|ref|YP_004337614.1| - 0.0021 17.8 0.8 1.5 8.7 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin DUF2296 PF10058.4 gi|327310717|ref|YP_004337614.1| - 0.0026 17.4 0.5 1.2 8.8 0.0 2.1 2 0 0 2 2 2 1 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_2 PF13240.1 gi|327310717|ref|YP_004337614.1| - 0.0028 17.0 2.6 0.19 11.2 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-ISL3 PF14690.1 gi|327310717|ref|YP_004337614.1| - 0.003 17.5 2.0 0.11 12.4 0.1 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.1 gi|327310717|ref|YP_004337614.1| - 0.0041 17.3 0.6 3.5 8.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain tRNA-synt_1f PF01921.13 gi|327310717|ref|YP_004337614.1| - 0.0042 15.7 0.0 0.0043 15.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) Sgf11 PF08209.6 gi|327310717|ref|YP_004337614.1| - 0.008 15.4 2.8 0.023 13.9 0.1 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) Prim_Zn_Ribbon PF08273.7 gi|327310717|ref|YP_004337614.1| - 0.0088 16.1 1.5 0.78 9.8 0.0 2.1 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.2 gi|327310717|ref|YP_004337614.1| - 0.011 15.5 3.3 0.032 14.0 2.3 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-CHY PF05495.7 gi|327310717|ref|YP_004337614.1| - 0.018 15.1 0.0 0.021 14.9 0.0 1.1 1 0 0 1 1 1 0 CHY zinc finger DZR PF12773.2 gi|327310717|ref|YP_004337614.1| - 0.021 14.6 1.2 0.1 12.4 0.8 1.9 1 1 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.8 gi|327310717|ref|YP_004337614.1| - 0.022 14.4 0.6 0.057 13.1 0.4 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like PhnA_Zn_Ribbon PF08274.7 gi|327310717|ref|YP_004337614.1| - 0.024 14.4 0.3 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-Mss51 PF13824.1 gi|327310717|ref|YP_004337614.1| - 0.025 14.4 2.7 0.8 9.6 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2 PF00096.21 gi|327310717|ref|YP_004337614.1| - 0.029 14.6 3.9 1.4 9.4 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_ribbon_recom PF13408.1 gi|327310717|ref|YP_004337614.1| - 0.033 14.4 1.9 0.051 13.8 1.3 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C4_Topoisom PF01396.14 gi|327310717|ref|YP_004337614.1| - 0.042 13.3 1.5 0.96 9.0 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.6 gi|327310717|ref|YP_004337614.1| - 0.051 13.0 0.5 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|327310717|ref|YP_004337614.1| - 0.054 13.4 2.3 0.28 11.1 1.6 1.9 1 1 1 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|327310717|ref|YP_004337614.1| - 0.054 13.1 2.4 0.3 10.7 1.7 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|327310717|ref|YP_004337614.1| - 0.065 12.9 0.1 0.076 12.7 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family CpXC PF14353.1 gi|327310717|ref|YP_004337614.1| - 0.075 12.9 0.4 1.9 8.4 0.0 2.0 2 0 0 2 2 2 0 CpXC protein Rad50_zn_hook PF04423.9 gi|327310717|ref|YP_004337614.1| - 0.08 12.4 2.0 1.2 8.6 0.0 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif ADK_lid PF05191.9 gi|327310717|ref|YP_004337614.1| - 0.13 12.0 1.4 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid C1_3 PF07649.7 gi|327310717|ref|YP_004337614.1| - 0.13 12.2 0.5 1.4 8.9 0.1 2.1 2 0 0 2 2 2 0 C1-like domain zf-C2H2_4 PF13894.1 gi|327310717|ref|YP_004337614.1| - 0.14 12.5 3.4 4.7 7.7 0.4 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Cys_rich_CPCC PF14206.1 gi|327310717|ref|YP_004337614.1| - 0.14 11.7 2.3 0.38 10.3 1.6 1.7 1 1 0 1 1 1 0 Cysteine-rich CPCC DUF3449 PF11931.3 gi|327310717|ref|YP_004337614.1| - 0.15 11.5 0.2 0.49 9.8 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3449) zf-AN1 PF01428.11 gi|327310717|ref|YP_004337614.1| - 0.16 11.9 0.5 13 5.7 0.0 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-FPG_IleRS PF06827.9 gi|327310717|ref|YP_004337614.1| - 0.16 11.6 1.9 12 5.6 0.1 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-HIT PF04438.11 gi|327310717|ref|YP_004337614.1| - 0.26 10.9 2.0 4.9 6.8 0.1 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-RING_3 PF14369.1 gi|327310717|ref|YP_004337614.1| - 0.27 11.2 1.8 1.9 8.5 0.1 2.2 1 1 1 2 2 2 0 zinc-finger A2L_zn_ribbon PF08792.5 gi|327310717|ref|YP_004337614.1| - 0.32 10.5 1.8 3.4 7.2 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Ogr_Delta PF04606.7 gi|327310717|ref|YP_004337614.1| - 0.33 10.6 4.8 0.39 10.4 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger RRN7 PF11781.3 gi|327310717|ref|YP_004337614.1| - 0.34 10.4 1.8 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C2HC_2 PF13913.1 gi|327310717|ref|YP_004337614.1| - 0.36 10.5 0.3 0.36 10.5 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type UPF0547 PF10571.4 gi|327310717|ref|YP_004337614.1| - 0.38 10.4 6.2 3.9 7.2 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.11 gi|327310717|ref|YP_004337614.1| - 0.4 10.4 4.3 4.9 6.9 0.5 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-Di19 PF05605.7 gi|327310717|ref|YP_004337614.1| - 0.43 10.7 1.9 22 5.2 0.2 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF3797 PF12677.2 gi|327310717|ref|YP_004337614.1| - 0.5 10.0 2.3 8.5 6.0 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Lar_restr_allev PF14354.1 gi|327310717|ref|YP_004337614.1| - 1.1 9.6 3.3 8.6 6.7 2.3 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-tcix PF14952.1 gi|327310717|ref|YP_004337614.1| - 4.2 6.8 6.6 7.3 6.0 0.6 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding EF1_GNE PF00736.14 gi|327310718|ref|YP_004337615.1| - 6.1e-20 70.7 0.1 6.6e-20 70.6 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3970 PF13113.1 gi|327310718|ref|YP_004337615.1| - 0.058 13.0 0.0 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3970) AAA PF00004.24 gi|327310719|ref|YP_004337616.1| - 6.5e-101 333.7 0.0 2.4e-49 166.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|327310719|ref|YP_004337616.1| - 7.7e-28 96.2 1.3 5e-27 93.6 1.0 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|327310719|ref|YP_004337616.1| - 9e-16 57.6 0.0 2.5e-07 29.9 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|327310719|ref|YP_004337616.1| - 1.7e-15 57.3 0.2 1.1e-05 25.5 0.0 4.5 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|327310719|ref|YP_004337616.1| - 1.2e-13 51.3 0.0 1.7e-07 31.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|327310719|ref|YP_004337616.1| - 3.5e-12 46.6 0.1 3.6e-05 23.8 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain TIP49 PF06068.8 gi|327310719|ref|YP_004337616.1| - 5.4e-12 45.1 0.1 3.3e-05 22.8 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_17 PF13207.1 gi|327310719|ref|YP_004337616.1| - 8.9e-12 45.9 0.1 1.9e-05 25.4 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|327310719|ref|YP_004337616.1| - 1e-11 44.8 0.0 3.4e-05 23.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|327310719|ref|YP_004337616.1| - 1.1e-11 44.2 0.1 2.5e-11 43.0 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.9 gi|327310719|ref|YP_004337616.1| - 1.8e-11 43.8 0.7 0.00044 19.9 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|327310719|ref|YP_004337616.1| - 1e-10 41.5 0.0 2.9e-05 23.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|327310719|ref|YP_004337616.1| - 2.4e-10 40.1 0.2 0.0013 18.1 0.0 3.3 3 0 0 3 3 3 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|327310719|ref|YP_004337616.1| - 1.6e-09 37.1 0.3 0.00022 20.3 0.0 2.8 3 0 0 3 3 3 2 Zeta toxin AAA_28 PF13521.1 gi|327310719|ref|YP_004337616.1| - 4.9e-09 36.3 0.1 0.0031 17.4 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|327310719|ref|YP_004337616.1| - 4.1e-08 33.5 0.1 0.0051 17.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|327310719|ref|YP_004337616.1| - 6.4e-08 32.2 1.9 0.0079 15.9 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain UFD1 PF03152.9 gi|327310719|ref|YP_004337616.1| - 3.3e-07 29.6 0.1 6.4e-07 28.6 0.1 1.4 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 Mg_chelatase PF01078.16 gi|327310719|ref|YP_004337616.1| - 7.3e-07 28.5 0.8 0.035 13.2 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|327310719|ref|YP_004337616.1| - 1.1e-06 28.7 0.0 0.012 15.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|327310719|ref|YP_004337616.1| - 2.4e-06 27.0 11.4 0.056 12.8 0.1 4.5 2 2 1 4 4 4 2 AAA domain RNA_helicase PF00910.17 gi|327310719|ref|YP_004337616.1| - 2.8e-06 27.4 0.0 0.059 13.5 0.0 2.5 2 0 0 2 2 2 2 RNA helicase PhoH PF02562.11 gi|327310719|ref|YP_004337616.1| - 5e-06 25.8 0.1 0.099 11.8 0.0 2.9 2 0 0 2 2 2 2 PhoH-like protein AAA_24 PF13479.1 gi|327310719|ref|YP_004337616.1| - 7.5e-06 25.6 0.1 0.14 11.7 0.0 3.1 3 0 0 3 3 3 2 AAA domain Sigma54_activat PF00158.21 gi|327310719|ref|YP_004337616.1| - 8.7e-06 25.3 0.1 0.13 11.7 0.0 3.4 3 1 0 3 3 3 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|327310719|ref|YP_004337616.1| - 1.5e-05 24.8 0.3 0.016 14.9 0.0 3.5 2 2 2 4 4 4 1 Archaeal ATPase DUF815 PF05673.8 gi|327310719|ref|YP_004337616.1| - 2.9e-05 23.1 0.0 0.19 10.6 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|327310719|ref|YP_004337616.1| - 3.9e-05 23.9 0.0 0.28 11.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter KaiC PF06745.8 gi|327310719|ref|YP_004337616.1| - 6.2e-05 22.2 2.1 0.49 9.4 0.0 3.6 3 1 1 4 4 3 2 KaiC Vps4_C PF09336.5 gi|327310719|ref|YP_004337616.1| - 0.00016 21.4 0.6 0.26 11.2 0.0 3.4 4 0 0 4 4 2 1 Vps4 C terminal oligomerisation domain NACHT PF05729.7 gi|327310719|ref|YP_004337616.1| - 0.00019 21.1 0.6 1.6 8.4 0.0 3.7 4 0 0 4 4 4 1 NACHT domain Bac_DnaA PF00308.13 gi|327310719|ref|YP_004337616.1| - 0.00043 20.0 0.0 0.061 12.9 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein Parvo_NS1 PF01057.12 gi|327310719|ref|YP_004337616.1| - 0.00045 19.1 0.1 0.75 8.6 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.6 gi|327310719|ref|YP_004337616.1| - 0.0005 19.6 0.0 1.2 8.7 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.13 gi|327310719|ref|YP_004337616.1| - 0.00068 19.2 0.0 0.056 12.9 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase T2SE PF00437.15 gi|327310719|ref|YP_004337616.1| - 0.001 18.0 0.8 0.82 8.5 0.0 3.6 5 0 0 5 5 4 1 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|327310719|ref|YP_004337616.1| - 0.0011 18.5 0.1 0.96 8.9 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain DUF2075 PF09848.4 gi|327310719|ref|YP_004337616.1| - 0.0013 17.7 0.0 0.59 9.0 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|327310719|ref|YP_004337616.1| - 0.0031 17.3 0.1 3.1 7.6 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase UPF0079 PF02367.12 gi|327310719|ref|YP_004337616.1| - 0.0033 17.0 0.1 2.9 7.5 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_11 PF13086.1 gi|327310719|ref|YP_004337616.1| - 0.0037 16.8 0.0 2 7.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|327310719|ref|YP_004337616.1| - 0.0042 15.9 0.0 1.2 7.9 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_30 PF13604.1 gi|327310719|ref|YP_004337616.1| - 0.0067 16.0 0.1 4.4 6.8 0.0 3.1 3 0 0 3 3 2 0 AAA domain ResIII PF04851.10 gi|327310719|ref|YP_004337616.1| - 0.0098 15.7 0.0 4 7.2 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|327310719|ref|YP_004337616.1| - 0.014 15.0 5.9 4.5 6.9 0.0 4.5 3 2 1 5 5 4 0 NTPase IPT PF01745.11 gi|327310719|ref|YP_004337616.1| - 0.014 14.5 0.3 2.1 7.4 0.1 2.4 2 0 0 2 2 2 0 Isopentenyl transferase PduV-EutP PF10662.4 gi|327310719|ref|YP_004337616.1| - 0.022 14.2 0.0 3.7 7.0 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Molydop_binding PF01568.16 gi|327310719|ref|YP_004337616.1| - 0.036 13.8 0.1 0.31 10.8 0.1 2.6 2 0 0 2 2 2 0 Molydopterin dinucleotide binding domain AAA_10 PF12846.2 gi|327310719|ref|YP_004337616.1| - 0.041 13.3 3.1 6.9 6.0 0.1 3.8 2 2 1 3 3 3 0 AAA-like domain AFG1_ATPase PF03969.11 gi|327310719|ref|YP_004337616.1| - 0.051 12.3 0.0 9.4 4.9 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase cobW PF02492.14 gi|327310719|ref|YP_004337616.1| - 0.063 12.7 0.1 10 5.4 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|327310719|ref|YP_004337616.1| - 0.067 12.3 0.0 7.1 5.7 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Cytidylate_kin2 PF13189.1 gi|327310719|ref|YP_004337616.1| - 0.074 12.9 0.1 4.2 7.2 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_29 PF13555.1 gi|327310719|ref|YP_004337616.1| - 0.11 11.9 0.0 18 4.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain KAP_NTPase PF07693.9 gi|327310719|ref|YP_004337616.1| - 0.33 9.9 1.3 7.6 5.4 0.0 3.0 2 2 2 4 4 4 0 KAP family P-loop domain DnaI_N PF07319.6 gi|327310720|ref|YP_004337617.1| - 9.9e-05 22.5 0.1 0.0001 22.4 0.1 1.2 1 0 0 1 1 1 1 Primosomal protein DnaI N-terminus HTH_42 PF06224.7 gi|327310720|ref|YP_004337617.1| - 0.012 14.9 0.0 0.013 14.8 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|327310720|ref|YP_004337617.1| - 0.033 13.9 0.6 0.04 13.6 0.4 1.1 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4423 PF14394.1 gi|327310720|ref|YP_004337617.1| - 0.041 13.4 0.1 0.073 12.6 0.1 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) DUF365 PF04033.7 gi|327310720|ref|YP_004337617.1| - 0.075 13.0 0.3 0.086 12.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF365) Glycos_trans_3N PF02885.12 gi|327310720|ref|YP_004337617.1| - 0.12 11.9 0.1 1.8 8.2 0.0 2.1 1 1 1 2 2 2 0 Glycosyl transferase family, helical bundle domain U3_assoc_6 PF08640.6 gi|327310720|ref|YP_004337617.1| - 0.15 11.8 0.9 0.33 10.7 0.1 1.8 2 0 0 2 2 2 0 U3 small nucleolar RNA-associated protein 6 Dioxygenase_N PF04444.9 gi|327310720|ref|YP_004337617.1| - 0.2 11.6 0.9 1.8 8.6 0.3 2.1 1 1 1 2 2 2 0 Catechol dioxygenase N terminus XPG_I PF00867.13 gi|327310721|ref|YP_004337618.1| - 1.2e-28 98.9 0.0 2e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|327310721|ref|YP_004337618.1| - 3.9e-24 84.8 0.0 6.9e-24 84.0 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|327310721|ref|YP_004337618.1| - 0.0003 20.9 0.0 0.00083 19.5 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold DUF2458 PF10454.4 gi|327310721|ref|YP_004337618.1| - 0.038 13.8 0.0 0.092 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) Snurportin1 PF11538.3 gi|327310721|ref|YP_004337618.1| - 1.3 8.8 4.4 16 5.3 0.0 2.8 3 0 0 3 3 3 0 Snurportin1 DrsE PF02635.10 gi|327310722|ref|YP_004337619.1| - 9.3e-12 45.0 0.0 1e-11 44.9 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Abhydrolase_3 PF07859.8 gi|327310723|ref|YP_004337620.1| - 1.3e-76 256.8 1.6 1.8e-76 256.3 1.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|327310723|ref|YP_004337620.1| - 2.9e-19 69.2 0.1 5.3e-19 68.3 0.1 1.4 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|327310723|ref|YP_004337620.1| - 2.1e-09 37.2 0.7 3.1e-09 36.7 0.5 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF2424 PF10340.4 gi|327310723|ref|YP_004337620.1| - 5.7e-09 35.0 0.0 7.7e-09 34.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Abhydrolase_6 PF12697.2 gi|327310723|ref|YP_004337620.1| - 2.6e-06 27.4 5.0 2.6e-06 27.4 3.5 1.6 2 0 0 2 2 2 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|327310723|ref|YP_004337620.1| - 6e-05 21.6 0.1 0.062 11.7 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|327310723|ref|YP_004337620.1| - 0.0005 19.4 0.1 0.078 12.2 0.0 3.0 2 1 0 2 2 2 1 Dienelactone hydrolase family Chlorophyllase2 PF12740.2 gi|327310723|ref|YP_004337620.1| - 0.013 14.3 0.0 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme Peptidase_S9 PF00326.16 gi|327310723|ref|YP_004337620.1| - 0.018 14.3 0.1 0.037 13.2 0.0 1.7 1 1 0 1 1 1 0 Prolyl oligopeptidase family Esterase_phd PF10503.4 gi|327310723|ref|YP_004337620.1| - 0.02 14.1 4.3 0.09 12.0 1.3 2.9 1 1 0 2 2 2 0 Esterase PHB depolymerase Peptidase_S15 PF02129.13 gi|327310723|ref|YP_004337620.1| - 0.038 13.4 0.0 0.41 10.0 0.0 2.1 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.15 gi|327310723|ref|YP_004337620.1| - 0.18 11.1 0.3 2.8 7.3 0.2 2.1 1 1 0 1 1 1 0 Putative esterase Pyrophosphatase PF00719.14 gi|327310724|ref|YP_004337621.1| - 1.4e-56 190.2 0.0 1.6e-56 190.0 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase G_glu_transpept PF01019.16 gi|327310725|ref|YP_004337622.1| - 4.5e-62 210.1 0.0 2.3e-61 207.8 0.0 2.0 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase PALP PF00291.20 gi|327310726|ref|YP_004337623.1| - 1.2e-59 202.0 0.7 1.4e-59 201.8 0.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|327310726|ref|YP_004337623.1| - 0.003 16.6 2.5 0.0054 15.9 1.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DFP PF04127.10 gi|327310726|ref|YP_004337623.1| - 0.016 14.7 0.4 0.026 14.1 0.3 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein zinc_ribbon_5 PF13719.1 gi|327310726|ref|YP_004337623.1| - 0.019 14.5 0.6 0.97 9.0 0.4 2.5 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327310726|ref|YP_004337623.1| - 0.024 13.9 2.3 0.21 10.9 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|327310726|ref|YP_004337623.1| - 0.048 13.3 1.0 2.8 7.7 0.7 2.5 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|327310726|ref|YP_004337623.1| - 0.094 12.5 0.8 0.15 11.8 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|327310726|ref|YP_004337623.1| - 0.11 12.0 3.8 0.18 11.3 2.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF2318 PF10080.4 gi|327310726|ref|YP_004337623.1| - 0.11 12.3 0.3 0.19 11.4 0.2 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-NADH-PPase PF09297.6 gi|327310726|ref|YP_004337623.1| - 2 8.0 4.6 9.3 5.8 0.1 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain UPF0047 PF01894.12 gi|327310727|ref|YP_004337624.1| - 8.7e-37 125.5 0.0 1e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AA_permease PF00324.16 gi|327310729|ref|YP_004337626.1| - 9.7e-12 43.9 31.6 4e-11 41.9 21.9 1.9 1 1 0 1 1 1 1 Amino acid permease DUF3040 PF11239.3 gi|327310729|ref|YP_004337626.1| - 2.8 8.0 9.0 2.2 8.4 0.6 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) DUF3227 PF11537.3 gi|327310730|ref|YP_004337627.1| - 0.0003 20.8 0.0 0.00036 20.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3227) DHHA2 PF02833.9 gi|327310730|ref|YP_004337627.1| - 0.0055 16.8 0.0 0.0067 16.6 0.0 1.1 1 0 0 1 1 1 1 DHHA2 domain TENA_THI-4 PF03070.11 gi|327310731|ref|YP_004337628.1| - 1.4e-11 44.5 0.0 1.9e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.11 gi|327310732|ref|YP_004337629.1| - 1.8e-48 165.1 0.0 2.1e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family tRNA_m1G_MT PF01746.16 gi|327310733|ref|YP_004337630.1| - 5.8e-13 48.8 0.0 6.2e-12 45.4 0.0 2.0 1 1 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase Lactamase_B PF00753.22 gi|327310734|ref|YP_004337631.1| - 4.3e-10 39.5 0.5 8.4e-10 38.6 0.3 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|327310734|ref|YP_004337631.1| - 0.00022 20.8 0.0 0.00023 20.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|327310734|ref|YP_004337631.1| - 0.082 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain 4HBT PF03061.17 gi|327310735|ref|YP_004337632.1| - 1.3e-15 57.2 1.2 1.9e-15 56.7 0.8 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|327310735|ref|YP_004337632.1| - 3.3e-06 27.0 0.5 4.6e-06 26.5 0.3 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.1 gi|327310735|ref|YP_004337632.1| - 0.046 13.6 0.0 0.11 12.4 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4442) DUF3049 PF11250.3 gi|327310735|ref|YP_004337632.1| - 0.19 11.5 0.8 0.49 10.2 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3049) Rhomboid PF01694.17 gi|327310736|ref|YP_004337633.1| - 1.2e-16 61.1 11.0 1.2e-16 61.1 7.6 1.5 2 0 0 2 2 2 1 Rhomboid family DUF805 PF05656.9 gi|327310736|ref|YP_004337633.1| - 1 9.1 4.5 0.41 10.4 0.9 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF805) Ald_Xan_dh_C2 PF02738.13 gi|327310737|ref|YP_004337634.1| - 1.6e-139 465.7 0.0 2e-139 465.4 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|327310737|ref|YP_004337634.1| - 5.1e-25 87.6 1.1 1.7e-23 82.7 0.3 3.0 2 1 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.15 gi|327310738|ref|YP_004337635.1| - 5e-27 93.5 0.1 5e-27 93.5 0.0 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|327310738|ref|YP_004337635.1| - 3e-06 26.8 1.8 7.6e-06 25.5 0.1 2.1 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|327310738|ref|YP_004337635.1| - 0.0043 16.8 1.3 0.0043 16.8 0.9 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF4066 PF13278.1 gi|327310738|ref|YP_004337635.1| - 0.0089 15.3 0.0 0.026 13.8 0.0 1.6 1 1 1 2 2 2 1 Putative amidotransferase FAD_binding_5 PF00941.16 gi|327310739|ref|YP_004337636.1| - 1.6e-53 180.6 0.0 2.4e-53 180.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|327310739|ref|YP_004337636.1| - 2.6e-24 85.1 6.1 6e-24 83.9 3.9 1.8 2 0 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain ADH_N PF08240.7 gi|327310740|ref|YP_004337637.1| - 2.4e-14 53.0 0.0 4.1e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|327310740|ref|YP_004337637.1| - 1.3e-06 28.0 0.3 2.6e-06 27.0 0.2 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_3 PF01494.14 gi|327310740|ref|YP_004337637.1| - 0.00076 18.6 0.3 0.0012 18.0 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|327310740|ref|YP_004337637.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|327310740|ref|YP_004337637.1| - 0.018 15.1 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|327310740|ref|YP_004337637.1| - 0.094 12.1 0.1 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.1 gi|327310740|ref|YP_004337637.1| - 0.1 12.6 0.7 0.41 10.7 0.1 2.3 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|327310740|ref|YP_004337637.1| - 0.12 12.6 0.2 0.33 11.2 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox_2 PF07992.9 gi|327310740|ref|YP_004337637.1| - 0.13 12.1 0.3 0.66 9.8 0.1 2.0 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_20 PF00982.16 gi|327310741|ref|YP_004337638.1| - 8.1e-139 463.1 0.0 1e-138 462.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.11 gi|327310741|ref|YP_004337638.1| - 2.2e-58 196.9 0.0 3.2e-58 196.4 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.7 gi|327310741|ref|YP_004337638.1| - 1.5e-07 31.2 0.0 0.0074 15.9 0.0 2.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Glycos_transf_1 PF00534.15 gi|327310741|ref|YP_004337638.1| - 0.0019 17.6 0.1 0.58 9.5 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferases group 1 CoA_transf_3 PF02515.12 gi|327310742|ref|YP_004337639.1| - 5.2e-74 247.6 0.1 8.4e-74 246.9 0.1 1.3 1 0 0 1 1 1 1 CoA-transferase family III Death PF00531.17 gi|327310742|ref|YP_004337639.1| - 0.012 15.3 0.0 8 6.3 0.0 2.6 3 0 0 3 3 3 0 Death domain ECH PF00378.15 gi|327310743|ref|YP_004337640.1| - 2.5e-33 115.2 0.0 2.9e-33 115.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Amidase PF01425.16 gi|327310744|ref|YP_004337641.1| - 4e-104 348.9 0.1 4.7e-104 348.6 0.0 1.0 1 0 0 1 1 1 1 Amidase HTH_20 PF12840.2 gi|327310745|ref|YP_004337642.1| - 2.7e-12 46.2 0.2 6.4e-12 45.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|327310745|ref|YP_004337642.1| - 3.7e-07 29.7 0.0 7.2e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|327310745|ref|YP_004337642.1| - 0.04 13.3 0.5 0.095 12.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding CTP_transf_2 PF01467.21 gi|327310746|ref|YP_004337643.1| - 5.3e-12 46.0 0.0 7e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Phosphoesterase PF04185.9 gi|327310747|ref|YP_004337644.1| - 1.3e-63 215.5 0.0 2.7e-63 214.4 0.0 1.5 1 1 0 1 1 1 1 Phosphoesterase family AAA_14 PF13173.1 gi|327310748|ref|YP_004337645.1| - 0.00017 21.4 0.0 0.00064 19.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|327310748|ref|YP_004337645.1| - 0.00059 19.5 0.0 0.098 12.3 0.0 2.3 2 0 0 2 2 2 2 Archaeal ATPase AAA_16 PF13191.1 gi|327310748|ref|YP_004337645.1| - 0.0017 18.3 0.6 0.019 14.9 0.1 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|327310748|ref|YP_004337645.1| - 0.0058 16.7 0.0 1.3 9.2 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|327310748|ref|YP_004337645.1| - 0.048 13.0 0.1 0.48 9.7 0.0 2.4 2 2 0 2 2 2 0 AAA domain MazG PF03819.12 gi|327310749|ref|YP_004337646.1| - 5.3e-09 35.9 0.7 6.9e-09 35.5 0.5 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain dUTPase_2 PF08761.6 gi|327310749|ref|YP_004337646.1| - 0.0027 17.8 0.0 0.044 13.8 0.0 2.0 1 1 0 2 2 2 1 dUTPase FeoB_N PF02421.13 gi|327310750|ref|YP_004337647.1| - 9e-27 93.2 0.0 1.3e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|327310750|ref|YP_004337647.1| - 1.3e-20 73.3 23.6 2.3e-16 59.6 4.4 3.1 3 1 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|327310750|ref|YP_004337647.1| - 1.5e-17 63.6 0.0 2.2e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|327310750|ref|YP_004337647.1| - 0.0016 17.6 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|327310750|ref|YP_004337647.1| - 0.019 14.7 0.0 3.5 7.4 0.0 2.1 1 1 1 2 2 2 0 Dynamin family MobB PF03205.9 gi|327310750|ref|YP_004337647.1| - 0.057 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|327310750|ref|YP_004337647.1| - 0.097 12.9 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_17 PF13207.1 gi|327310750|ref|YP_004337647.1| - 0.13 13.0 0.0 0.34 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain Aldo_ket_red PF00248.16 gi|327310751|ref|YP_004337648.1| - 3.9e-40 137.4 0.0 4.4e-40 137.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Glyco_trans_4_4 PF13579.1 gi|327310751|ref|YP_004337648.1| - 9.4 6.3 12.0 12 6.0 5.4 2.4 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain SBP_bac_1 PF01547.20 gi|327310753|ref|YP_004337650.1| - 7e-15 55.5 0.4 7.4e-15 55.4 0.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|327310753|ref|YP_004337650.1| - 1.2e-10 41.5 0.0 1.4e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|327310753|ref|YP_004337650.1| - 0.042 13.1 0.1 0.058 12.7 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein PaREP1 PF05942.6 gi|327310754|ref|YP_004337651.1| - 2.8e-30 104.5 4.8 3.3e-30 104.3 3.3 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Mitoc_L55 PF09776.4 gi|327310754|ref|YP_004337651.1| - 0.057 13.0 0.1 0.17 11.5 0.0 1.9 1 1 1 2 2 2 0 Mitochondrial ribosomal protein L55 DUF4398 PF14346.1 gi|327310754|ref|YP_004337651.1| - 0.28 11.2 5.8 0.39 10.8 3.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) TK PF00265.13 gi|327310755|ref|YP_004337652.1| - 7.8e-46 155.8 0.0 8.7e-46 155.6 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase Scytalone_dh PF02982.9 gi|327310755|ref|YP_004337652.1| - 0.014 14.9 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Scytalone dehydratase AAA_14 PF13173.1 gi|327310755|ref|YP_004337652.1| - 0.16 11.8 0.0 0.26 11.2 0.0 1.3 1 1 0 1 1 1 0 AAA domain Mis14 PF08641.7 gi|327310756|ref|YP_004337653.1| - 0.13 12.3 1.1 0.22 11.5 0.8 1.3 1 0 0 1 1 1 0 Kinetochore protein Mis14 like Peptidase_M48 PF01435.13 gi|327310758|ref|YP_004337655.1| - 0.02 14.4 0.7 0.041 13.4 0.5 1.5 1 0 0 1 1 1 0 Peptidase family M48 TcdA_TcdB_pore PF12920.2 gi|327310758|ref|YP_004337655.1| - 1.5 6.6 4.2 2.7 5.7 2.9 1.3 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain PaREP1 PF05942.6 gi|327310759|ref|YP_004337656.1| - 1.6e-33 115.0 0.1 1.9e-33 114.7 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family NAD_binding_2 PF03446.10 gi|327310760|ref|YP_004337657.1| - 4.6e-52 176.1 0.0 6.9e-52 175.5 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|327310760|ref|YP_004337657.1| - 2.5e-27 95.3 0.5 3.4e-27 94.9 0.4 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|327310760|ref|YP_004337657.1| - 1.1e-05 25.7 0.1 3.1e-05 24.3 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|327310760|ref|YP_004337657.1| - 0.00015 21.8 0.0 0.00066 19.7 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|327310760|ref|YP_004337657.1| - 0.00024 20.2 0.0 0.00049 19.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|327310760|ref|YP_004337657.1| - 0.014 15.0 0.8 0.33 10.5 0.1 2.3 1 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|327310760|ref|YP_004337657.1| - 0.021 14.2 0.0 0.042 13.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HEPN PF05168.9 gi|327310761|ref|YP_004337658.1| - 0.00049 19.9 0.1 0.00051 19.9 0.0 1.1 1 0 0 1 1 1 1 HEPN domain MFS_1 PF07690.11 gi|327310763|ref|YP_004337660.1| - 1.5e-30 106.1 47.3 1.5e-30 106.1 32.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2417 PF10329.4 gi|327310765|ref|YP_004337662.1| - 1 8.7 4.2 2 7.7 0.2 2.4 2 0 0 2 2 2 0 Region of unknown function (DUF2417) ABC_tran PF00005.22 gi|327310766|ref|YP_004337663.1| - 2.9e-31 108.6 0.0 4.1e-31 108.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310766|ref|YP_004337663.1| - 3.3e-15 56.8 0.0 2e-08 34.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|327310766|ref|YP_004337663.1| - 3.4e-05 23.0 0.0 0.00094 18.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|327310766|ref|YP_004337663.1| - 0.00039 19.8 0.1 0.00075 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|327310766|ref|YP_004337663.1| - 0.00077 18.7 0.1 0.38 9.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|327310766|ref|YP_004337663.1| - 0.0052 16.2 0.0 0.99 8.7 0.0 2.3 2 1 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|327310766|ref|YP_004337663.1| - 0.013 15.5 0.1 0.083 13.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|327310766|ref|YP_004337663.1| - 0.02 15.1 0.4 0.55 10.4 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|327310766|ref|YP_004337663.1| - 0.021 14.2 0.0 0.044 13.2 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|327310766|ref|YP_004337663.1| - 0.029 15.2 0.1 0.19 12.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|327310766|ref|YP_004337663.1| - 0.047 14.0 0.1 0.072 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|327310766|ref|YP_004337663.1| - 0.073 13.0 1.0 0.23 11.4 0.6 2.0 1 1 0 1 1 1 0 AAA ATPase domain NTP_transf_2 PF01909.18 gi|327310767|ref|YP_004337664.1| - 5e-09 36.3 0.9 5.7e-09 36.1 0.7 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|327310767|ref|YP_004337664.1| - 4.4e-05 22.9 0.1 7.3e-05 22.2 0.1 1.3 1 1 0 1 1 1 1 Predicted nucleotidyltransferase DUF294 PF03445.8 gi|327310767|ref|YP_004337664.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|327310768|ref|YP_004337665.1| - 2.4e-34 117.7 0.1 2.8e-34 117.5 0.1 1.0 1 0 0 1 1 1 1 HEPN domain HTH_IclR PF09339.5 gi|327310768|ref|YP_004337665.1| - 0.018 14.6 0.0 0.043 13.4 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain PaREP1 PF05942.6 gi|327310768|ref|YP_004337665.1| - 0.06 13.2 0.1 0.072 12.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family A2L_zn_ribbon PF08792.5 gi|327310768|ref|YP_004337665.1| - 0.061 12.7 0.0 0.097 12.1 0.0 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain SWIM PF04434.12 gi|327310769|ref|YP_004337666.1| - 0.19 11.2 0.9 0.45 10.0 0.6 1.6 1 1 0 1 1 1 0 SWIM zinc finger Rieske PF00355.21 gi|327310770|ref|YP_004337667.1| - 1.7e-12 46.7 0.0 1.9e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|327310770|ref|YP_004337667.1| - 9.3e-07 28.5 0.0 1.3e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Arch_ATPase PF01637.13 gi|327310771|ref|YP_004337668.1| - 1.3e-24 87.1 0.0 5.7e-24 85.1 0.0 2.0 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|327310771|ref|YP_004337668.1| - 2e-18 66.3 0.0 4.1e-18 65.3 0.0 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_16 PF13191.1 gi|327310771|ref|YP_004337668.1| - 9.6e-08 32.2 0.4 5.1e-06 26.5 0.1 2.9 2 1 1 3 3 3 1 AAA ATPase domain HTH_20 PF12840.2 gi|327310771|ref|YP_004337668.1| - 4.8e-06 26.2 0.0 1.8e-05 24.4 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|327310771|ref|YP_004337668.1| - 1.2e-05 24.6 0.0 8.4e-05 21.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AAA_22 PF13401.1 gi|327310771|ref|YP_004337668.1| - 1.6e-05 25.0 0.0 3.3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|327310771|ref|YP_004337668.1| - 0.00031 20.8 0.0 0.0011 19.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) HTH_28 PF13518.1 gi|327310771|ref|YP_004337668.1| - 0.0011 18.9 0.1 0.003 17.5 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|327310771|ref|YP_004337668.1| - 0.0013 18.8 0.1 0.016 15.3 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator AAA_14 PF13173.1 gi|327310771|ref|YP_004337668.1| - 0.0018 18.1 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain HTH_5 PF01022.15 gi|327310771|ref|YP_004337668.1| - 0.002 17.7 0.0 0.0054 16.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|327310771|ref|YP_004337668.1| - 0.0023 17.7 0.0 0.0041 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|327310771|ref|YP_004337668.1| - 0.0027 17.3 0.7 0.023 14.4 0.1 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|327310771|ref|YP_004337668.1| - 0.0036 17.1 0.1 0.0089 15.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR PF01047.17 gi|327310771|ref|YP_004337668.1| - 0.0074 15.9 0.1 0.025 14.2 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|327310771|ref|YP_004337668.1| - 0.014 15.0 0.7 0.041 13.5 0.0 2.2 2 0 0 2 2 1 0 MarR family HxlR PF01638.12 gi|327310771|ref|YP_004337668.1| - 0.024 14.2 0.0 0.11 12.1 0.0 2.0 3 0 0 3 3 3 0 HxlR-like helix-turn-helix DUF4423 PF14394.1 gi|327310771|ref|YP_004337668.1| - 0.028 13.9 0.0 0.42 10.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) NERD PF08378.6 gi|327310771|ref|YP_004337668.1| - 0.039 14.2 0.0 0.079 13.2 0.0 1.5 1 0 0 1 1 1 0 Nuclease-related domain HTH_IclR PF09339.5 gi|327310771|ref|YP_004337668.1| - 0.087 12.4 0.1 0.47 10.0 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF3501 PF12007.3 gi|327310772|ref|YP_004337669.1| - 7.3e-35 120.3 0.0 9.3e-35 120.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) Rubrerythrin PF02915.12 gi|327310773|ref|YP_004337670.1| - 5.3e-22 78.6 4.7 1.8e-21 76.9 2.9 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|327310773|ref|YP_004337670.1| - 7.4e-06 25.7 3.2 0.012 15.3 0.1 2.3 1 1 1 2 2 2 2 Ferritin-like domain BtpA PF03437.10 gi|327310775|ref|YP_004337672.1| - 3.1e-77 259.2 0.0 3.7e-77 259.0 0.0 1.0 1 0 0 1 1 1 1 BtpA family Amidohydro_4 PF13147.1 gi|327310775|ref|YP_004337672.1| - 0.048 13.6 5.3 0.26 11.2 3.6 1.9 1 1 0 1 1 1 0 Amidohydrolase UPF0547 PF10571.4 gi|327310776|ref|YP_004337673.1| - 2.3e-09 36.7 5.2 3.5e-09 36.1 3.6 1.3 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.1 gi|327310776|ref|YP_004337673.1| - 0.0005 19.2 0.6 0.00065 18.8 0.4 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|327310776|ref|YP_004337673.1| - 0.00068 18.7 4.9 0.0026 16.9 3.4 1.8 1 1 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.3 gi|327310776|ref|YP_004337673.1| - 0.00076 19.3 0.9 0.038 13.9 0.0 2.3 2 1 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|327310776|ref|YP_004337673.1| - 0.0011 18.7 0.8 0.0017 18.1 0.5 1.3 1 1 0 1 1 1 1 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|327310776|ref|YP_004337673.1| - 0.0054 16.9 3.4 0.17 12.2 0.1 2.1 2 0 0 2 2 2 1 Zinc-finger double domain zf-C3HC4_3 PF13920.1 gi|327310776|ref|YP_004337673.1| - 0.0058 16.2 1.8 0.093 12.4 0.2 2.1 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-FPG_IleRS PF06827.9 gi|327310776|ref|YP_004337673.1| - 0.0065 16.0 1.0 2.3 7.9 0.1 2.1 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS C1_1 PF00130.17 gi|327310776|ref|YP_004337673.1| - 0.01 15.5 0.3 0.013 15.1 0.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-tcix PF14952.1 gi|327310776|ref|YP_004337673.1| - 0.011 15.0 0.0 0.011 15.0 0.0 1.9 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding NMD3 PF04981.8 gi|327310776|ref|YP_004337673.1| - 0.014 14.5 0.6 0.014 14.4 0.4 1.0 1 0 0 1 1 1 0 NMD3 family zinc_ribbon_2 PF13240.1 gi|327310776|ref|YP_004337673.1| - 0.018 14.5 5.1 0.2 11.1 3.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|327310776|ref|YP_004337673.1| - 0.02 15.2 1.4 5.5 7.5 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|327310776|ref|YP_004337673.1| - 0.021 14.4 1.2 0.039 13.5 0.8 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF329 PF03884.9 gi|327310776|ref|YP_004337673.1| - 0.023 14.2 0.6 2 8.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-C2H2 PF00096.21 gi|327310776|ref|YP_004337673.1| - 0.024 14.9 3.5 0.37 11.2 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Lar_restr_allev PF14354.1 gi|327310776|ref|YP_004337673.1| - 0.037 14.3 0.5 0.045 14.0 0.3 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|327310776|ref|YP_004337673.1| - 0.037 14.0 1.5 1.8 8.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 eIF-5_eIF-2B PF01873.12 gi|327310776|ref|YP_004337673.1| - 0.042 13.5 0.3 0.049 13.2 0.2 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Rubredoxin PF00301.15 gi|327310776|ref|YP_004337673.1| - 0.056 13.3 1.1 2.2 8.2 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin zf-C4_Topoisom PF01396.14 gi|327310776|ref|YP_004337673.1| - 0.062 12.8 1.3 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger YhfH PF14149.1 gi|327310776|ref|YP_004337673.1| - 0.065 13.0 0.4 0.37 10.6 0.1 1.9 2 0 0 2 2 2 0 YhfH-like protein zinc_ribbon_5 PF13719.1 gi|327310776|ref|YP_004337673.1| - 0.1 12.2 2.6 0.99 9.0 1.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|327310776|ref|YP_004337673.1| - 0.1 12.1 2.4 2.8 7.5 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_6 PF13912.1 gi|327310776|ref|YP_004337673.1| - 0.11 12.4 2.0 7.9 6.5 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|327310776|ref|YP_004337673.1| - 0.12 12.2 3.1 0.37 10.6 0.5 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|327310776|ref|YP_004337673.1| - 0.13 12.0 3.2 0.33 10.6 2.2 1.7 1 1 0 1 1 1 0 Nudix N-terminal RNHCP PF12647.2 gi|327310776|ref|YP_004337673.1| - 0.13 12.0 0.9 0.23 11.3 0.6 1.5 1 1 0 1 1 1 0 RNHCP domain zinc_ribbon_4 PF13717.1 gi|327310776|ref|YP_004337673.1| - 0.13 11.9 3.1 0.52 10.0 0.1 2.2 1 1 1 2 2 1 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|327310776|ref|YP_004337673.1| - 0.14 12.0 2.6 2.5 8.0 0.1 2.0 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain DUF2256 PF10013.4 gi|327310776|ref|YP_004337673.1| - 0.14 11.9 1.6 4.7 7.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) RecR PF02132.10 gi|327310776|ref|YP_004337673.1| - 0.15 11.5 2.3 4 6.9 0.2 2.2 2 0 0 2 2 2 0 RecR protein zf-RING_3 PF14369.1 gi|327310776|ref|YP_004337673.1| - 0.15 12.0 1.1 0.23 11.5 0.7 1.3 1 1 0 1 1 1 0 zinc-finger A2L_zn_ribbon PF08792.5 gi|327310776|ref|YP_004337673.1| - 0.17 11.3 2.3 0.68 9.4 1.6 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain IBR PF01485.16 gi|327310776|ref|YP_004337673.1| - 0.18 11.6 1.3 0.41 10.5 0.9 1.6 1 1 0 1 1 1 0 IBR domain DUF164 PF02591.10 gi|327310776|ref|YP_004337673.1| - 0.19 11.5 1.3 0.29 11.0 0.9 1.4 1 0 0 1 1 1 0 Putative zinc ribbon domain Prok-RING_1 PF14446.1 gi|327310776|ref|YP_004337673.1| - 0.22 11.2 3.2 1.7 8.4 2.2 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Ribosomal_L33 PF00471.15 gi|327310776|ref|YP_004337673.1| - 0.25 11.6 1.3 0.85 9.9 0.1 2.0 2 0 0 2 2 2 0 Ribosomal protein L33 zf-RING_2 PF13639.1 gi|327310776|ref|YP_004337673.1| - 0.28 11.0 4.4 0.81 9.5 3.0 1.7 1 1 1 2 2 2 0 Ring finger domain Auto_anti-p27 PF06677.7 gi|327310776|ref|YP_004337673.1| - 0.28 10.9 2.7 4.7 7.0 0.1 2.3 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1610 PF07754.6 gi|327310776|ref|YP_004337673.1| - 0.29 11.3 1.0 0.29 11.3 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rad50_zn_hook PF04423.9 gi|327310776|ref|YP_004337673.1| - 0.32 10.4 2.0 2.8 7.4 0.2 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.5 gi|327310776|ref|YP_004337673.1| - 0.35 10.8 3.4 22 5.0 0.2 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Cys_rich_CPCC PF14206.1 gi|327310776|ref|YP_004337673.1| - 0.68 9.5 3.4 5.5 6.6 0.3 2.0 1 1 1 2 2 2 0 Cysteine-rich CPCC RNA_POL_M_15KD PF02150.11 gi|327310776|ref|YP_004337673.1| - 0.8 9.4 3.2 2.8 7.7 2.2 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit TFIIS_C PF01096.13 gi|327310776|ref|YP_004337673.1| - 1 9.0 3.1 8.9 6.0 2.2 2.0 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) DUF2225 PF09986.4 gi|327310776|ref|YP_004337673.1| - 1.1 8.6 4.4 2.4 7.5 0.2 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) TF_Zn_Ribbon PF08271.7 gi|327310776|ref|YP_004337673.1| - 1.5 8.2 6.7 7 6.0 4.7 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zf-Di19 PF05605.7 gi|327310776|ref|YP_004337673.1| - 1.5 8.9 3.9 3.2 7.9 0.1 2.0 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF3797 PF12677.2 gi|327310776|ref|YP_004337673.1| - 2.2 7.9 6.2 2.8 7.6 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) ADK_lid PF05191.9 gi|327310776|ref|YP_004337673.1| - 8 6.2 8.1 16 5.2 0.3 2.5 2 1 0 2 2 2 0 Adenylate kinase, active site lid DUF440 PF04269.7 gi|327310777|ref|YP_004337674.1| - 0.098 12.6 0.0 0.14 12.1 0.0 1.2 1 1 0 1 1 1 0 Protein of unknown function, DUF440 MFS_1 PF07690.11 gi|327310778|ref|YP_004337675.1| - 1.2e-05 24.1 55.9 9.2e-05 21.3 28.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily PBP PF01161.15 gi|327310780|ref|YP_004337677.1| - 7.8e-41 139.3 0.0 9.3e-41 139.0 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF95 PF01944.12 gi|327310781|ref|YP_004337678.1| - 5.7e-16 58.6 10.9 7.7e-16 58.2 7.5 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 Baculo_PEP_C PF04513.7 gi|327310783|ref|YP_004337680.1| - 0.00085 19.1 0.6 0.00085 19.1 0.4 2.4 2 1 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Peptidase_M61 PF05299.7 gi|327310783|ref|YP_004337680.1| - 0.077 12.9 0.1 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 M61 glycyl aminopeptidase MitMem_reg PF13012.1 gi|327310783|ref|YP_004337680.1| - 0.093 12.8 0.7 11 6.1 0.0 2.5 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function DUF1524 PF07510.6 gi|327310783|ref|YP_004337680.1| - 0.11 12.3 0.2 0.18 11.6 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1524) PepSY_2 PF13670.1 gi|327310783|ref|YP_004337680.1| - 0.55 10.1 3.4 4.4 7.2 0.0 2.7 2 1 0 2 2 2 0 Peptidase propeptide and YPEB domain MarR_2 PF12802.2 gi|327310784|ref|YP_004337681.1| - 3.7e-08 32.9 0.1 6.6e-08 32.1 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|327310784|ref|YP_004337681.1| - 5e-07 29.3 0.0 7.9e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|327310784|ref|YP_004337681.1| - 1.8e-06 27.2 0.0 3.8e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|327310784|ref|YP_004337681.1| - 9.4e-06 25.2 0.0 1.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|327310784|ref|YP_004337681.1| - 0.00015 21.2 0.1 0.0003 20.3 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|327310784|ref|YP_004337681.1| - 0.00024 20.5 0.0 0.00045 19.7 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_38 PF13936.1 gi|327310784|ref|YP_004337681.1| - 0.00036 20.0 0.0 0.00056 19.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|327310784|ref|YP_004337681.1| - 0.00059 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|327310784|ref|YP_004337681.1| - 0.002 18.0 0.0 0.0038 17.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|327310784|ref|YP_004337681.1| - 0.0023 17.5 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.16 gi|327310784|ref|YP_004337681.1| - 0.0026 17.1 0.1 0.0052 16.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|327310784|ref|YP_004337681.1| - 0.0028 17.5 0.0 0.0043 16.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.1 gi|327310784|ref|YP_004337681.1| - 0.0034 17.4 0.0 0.0065 16.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|327310784|ref|YP_004337681.1| - 0.0086 15.8 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|327310784|ref|YP_004337681.1| - 0.011 15.8 0.0 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|327310784|ref|YP_004337681.1| - 0.014 15.3 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|327310784|ref|YP_004337681.1| - 0.028 14.0 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|327310784|ref|YP_004337681.1| - 0.043 13.4 0.0 0.077 12.6 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.1 gi|327310784|ref|YP_004337681.1| - 0.056 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoB_C PF07664.7 gi|327310784|ref|YP_004337681.1| - 0.089 12.2 0.0 0.23 10.8 0.0 1.6 1 0 0 1 1 1 0 Ferrous iron transport protein B C terminus Herpes_gE PF02480.11 gi|327310784|ref|YP_004337681.1| - 0.097 10.9 0.3 0.12 10.6 0.2 1.1 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E TFIIE_alpha PF02002.12 gi|327310784|ref|YP_004337681.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit TPPK_C PF12555.3 gi|327310784|ref|YP_004337681.1| - 2 8.1 9.7 0.18 11.5 3.1 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal TRAM PF01938.15 gi|327310785|ref|YP_004337682.1| - 2.6e-13 49.5 3.4 3.1e-13 49.3 2.4 1.1 1 0 0 1 1 1 1 TRAM domain CusF_Ec PF11604.3 gi|327310785|ref|YP_004337682.1| - 0.047 13.5 0.1 0.75 9.7 0.0 2.0 2 0 0 2 2 2 0 Copper binding periplasmic protein CusF tRNA-synt_1b PF00579.20 gi|327310786|ref|YP_004337683.1| - 3e-31 108.6 0.0 5.9e-31 107.6 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|327310786|ref|YP_004337683.1| - 0.016 13.8 0.0 1.1 7.8 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) NPV_P10 PF05531.7 gi|327310787|ref|YP_004337684.1| - 0.0019 18.3 0.0 0.0042 17.2 0.0 1.6 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein COG2 PF06148.6 gi|327310787|ref|YP_004337684.1| - 0.0025 17.6 0.1 0.0039 17.0 0.1 1.4 1 0 0 1 1 1 1 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.7 gi|327310787|ref|YP_004337684.1| - 0.016 15.0 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.13 gi|327310787|ref|YP_004337684.1| - 0.016 14.6 0.1 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain CorA PF01544.13 gi|327310787|ref|YP_004337684.1| - 0.022 13.8 0.6 0.025 13.6 0.4 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Matrilin_ccoil PF10393.4 gi|327310787|ref|YP_004337684.1| - 0.025 13.9 0.0 3.3 7.1 0.0 2.4 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin HHH_8 PF14716.1 gi|327310787|ref|YP_004337684.1| - 0.025 14.7 0.1 0.062 13.4 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Ax_dynein_light PF10211.4 gi|327310787|ref|YP_004337684.1| - 0.026 14.3 0.0 0.038 13.8 0.0 1.3 1 1 0 1 1 1 0 Axonemal dynein light chain LPP PF04728.8 gi|327310787|ref|YP_004337684.1| - 0.032 14.0 0.1 4.9 7.0 0.1 2.3 1 1 1 2 2 2 0 Lipoprotein leucine-zipper DUF1664 PF07889.7 gi|327310787|ref|YP_004337684.1| - 0.037 13.8 0.1 0.11 12.2 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) MIS13 PF08202.6 gi|327310787|ref|YP_004337684.1| - 0.04 12.9 0.0 0.051 12.6 0.0 1.1 1 0 0 1 1 1 0 Mis12-Mtw1 protein family Myosin_tail_1 PF01576.14 gi|327310787|ref|YP_004337684.1| - 0.047 11.4 0.5 0.05 11.3 0.4 1.1 1 0 0 1 1 1 0 Myosin tail FadA PF09403.5 gi|327310787|ref|YP_004337684.1| - 0.049 13.6 0.1 0.064 13.2 0.1 1.2 1 0 0 1 1 1 0 Adhesion protein FadA HalX PF08663.5 gi|327310787|ref|YP_004337684.1| - 0.057 13.4 0.4 0.48 10.4 0.3 2.2 1 1 1 2 2 2 0 HalX domain IncA PF04156.9 gi|327310787|ref|YP_004337684.1| - 0.087 12.4 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 IncA protein TBPIP PF07106.8 gi|327310787|ref|YP_004337684.1| - 0.094 12.2 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Sugar_tr PF00083.19 gi|327310788|ref|YP_004337685.1| - 1.5e-24 86.3 19.9 2.8e-24 85.5 13.4 1.5 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|327310788|ref|YP_004337685.1| - 2e-18 66.2 46.5 2e-18 66.2 32.2 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF1616 PF07760.6 gi|327310788|ref|YP_004337685.1| - 0.0089 15.2 0.1 0.02 14.0 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) ABC_tran PF00005.22 gi|327310789|ref|YP_004337686.1| - 8.5e-32 110.3 0.0 1.1e-31 109.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310789|ref|YP_004337686.1| - 8.7e-14 52.1 0.8 3.5e-06 27.2 0.3 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|327310789|ref|YP_004337686.1| - 2.1e-06 27.1 0.1 8e-06 25.2 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|327310789|ref|YP_004337686.1| - 3.3e-06 26.5 0.1 6.7e-06 25.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|327310789|ref|YP_004337686.1| - 4.1e-06 26.4 0.0 0.00036 20.0 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|327310789|ref|YP_004337686.1| - 1.1e-05 25.8 0.2 2.3e-05 24.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|327310789|ref|YP_004337686.1| - 0.0001 21.5 0.1 0.00018 20.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MutS_V PF00488.16 gi|327310789|ref|YP_004337686.1| - 0.00056 19.3 0.0 0.00085 18.8 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_25 PF13481.1 gi|327310789|ref|YP_004337686.1| - 0.0013 18.1 0.3 0.0038 16.6 0.1 1.7 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|327310789|ref|YP_004337686.1| - 0.002 18.0 0.1 0.0054 16.6 0.1 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|327310789|ref|YP_004337686.1| - 0.0042 16.2 0.0 0.029 13.4 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|327310789|ref|YP_004337686.1| - 0.0056 16.6 0.4 0.047 13.6 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|327310789|ref|YP_004337686.1| - 0.0069 16.1 2.3 0.046 13.4 0.9 2.5 2 1 0 2 2 2 1 Part of AAA domain ABC_ATPase PF09818.4 gi|327310789|ref|YP_004337686.1| - 0.0074 14.9 1.1 0.036 12.6 0.1 2.1 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|327310789|ref|YP_004337686.1| - 0.01 15.9 0.1 0.12 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|327310789|ref|YP_004337686.1| - 0.01 15.7 0.1 0.31 10.9 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|327310789|ref|YP_004337686.1| - 0.014 15.0 0.1 0.037 13.5 0.1 1.7 2 0 0 2 2 1 0 AAA domain Dynamin_N PF00350.18 gi|327310789|ref|YP_004337686.1| - 0.014 15.1 0.2 0.015 15.0 0.1 1.4 1 1 0 1 1 1 0 Dynamin family AAA PF00004.24 gi|327310789|ref|YP_004337686.1| - 0.017 15.2 0.1 0.05 13.8 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|327310789|ref|YP_004337686.1| - 0.018 14.7 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase Polysacc_deac_2 PF04748.8 gi|327310789|ref|YP_004337686.1| - 0.048 12.6 0.0 0.072 12.0 0.0 1.2 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase AAA_14 PF13173.1 gi|327310789|ref|YP_004337686.1| - 0.056 13.3 0.0 0.46 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|327310789|ref|YP_004337686.1| - 0.084 12.8 0.2 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|327310789|ref|YP_004337686.1| - 0.11 12.0 0.1 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|327310789|ref|YP_004337686.1| - 0.11 11.5 0.1 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.12 gi|327310789|ref|YP_004337686.1| - 0.12 11.8 0.4 0.51 9.7 0.1 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein PduV-EutP PF10662.4 gi|327310789|ref|YP_004337686.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.1 gi|327310789|ref|YP_004337686.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|327310789|ref|YP_004337686.1| - 0.15 11.6 0.2 0.27 10.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|327310790|ref|YP_004337687.1| - 4.5e-29 101.4 0.0 5.7e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310790|ref|YP_004337687.1| - 7.9e-09 35.8 0.0 6e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|327310790|ref|YP_004337687.1| - 5.2e-07 29.0 0.0 8.9e-07 28.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|327310790|ref|YP_004337687.1| - 5.2e-06 26.9 0.1 7.6e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|327310790|ref|YP_004337687.1| - 7.6e-06 25.4 0.1 1.7e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter Arch_ATPase PF01637.13 gi|327310790|ref|YP_004337687.1| - 0.00015 21.5 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase ABC_ATPase PF09818.4 gi|327310790|ref|YP_004337687.1| - 0.00037 19.2 0.5 0.0012 17.5 0.1 1.8 2 0 0 2 2 2 1 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|327310790|ref|YP_004337687.1| - 0.00054 19.1 0.0 0.00084 18.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|327310790|ref|YP_004337687.1| - 0.00079 19.1 0.1 0.0019 17.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain T2SE PF00437.15 gi|327310790|ref|YP_004337687.1| - 0.0014 17.5 0.0 0.0021 17.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein SMC_N PF02463.14 gi|327310790|ref|YP_004337687.1| - 0.0016 17.6 0.1 0.0064 15.7 0.0 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|327310790|ref|YP_004337687.1| - 0.0025 17.9 0.1 0.014 15.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|327310790|ref|YP_004337687.1| - 0.0052 16.2 0.1 0.019 14.4 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|327310790|ref|YP_004337687.1| - 0.0058 16.6 0.1 0.0076 16.2 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|327310790|ref|YP_004337687.1| - 0.0064 15.5 0.0 0.0085 15.1 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|327310790|ref|YP_004337687.1| - 0.0075 15.9 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|327310790|ref|YP_004337687.1| - 0.01 15.4 0.1 0.038 13.5 0.0 1.8 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|327310790|ref|YP_004337687.1| - 0.017 14.5 0.1 0.032 13.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|327310790|ref|YP_004337687.1| - 0.019 14.8 0.0 0.033 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|327310790|ref|YP_004337687.1| - 0.019 13.4 0.0 0.025 13.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|327310790|ref|YP_004337687.1| - 0.023 14.1 0.1 0.039 13.3 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|327310790|ref|YP_004337687.1| - 0.033 14.1 0.1 0.11 12.4 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|327310790|ref|YP_004337687.1| - 0.035 14.9 0.2 0.43 11.3 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|327310790|ref|YP_004337687.1| - 0.044 13.7 0.0 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|327310790|ref|YP_004337687.1| - 0.046 13.9 0.0 0.11 12.6 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|327310790|ref|YP_004337687.1| - 0.065 13.1 0.0 0.21 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|327310790|ref|YP_004337687.1| - 0.067 12.6 0.2 0.2 11.0 0.0 1.8 2 1 0 2 2 2 0 AAA-like domain AAA_5 PF07728.9 gi|327310790|ref|YP_004337687.1| - 0.082 12.6 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|327310790|ref|YP_004337687.1| - 0.083 12.5 0.1 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DLIC PF05783.6 gi|327310790|ref|YP_004337687.1| - 0.088 11.4 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) IstB_IS21 PF01695.12 gi|327310790|ref|YP_004337687.1| - 0.13 11.7 0.1 4.4 6.6 0.0 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein DUF3584 PF12128.3 gi|327310790|ref|YP_004337687.1| - 0.13 9.5 0.0 0.18 9.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ANF_receptor PF01094.23 gi|327310791|ref|YP_004337688.1| - 4.8e-42 144.0 1.4 6.4e-42 143.5 0.9 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.1 gi|327310791|ref|YP_004337688.1| - 1.6e-38 132.9 13.1 2e-38 132.6 9.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|327310791|ref|YP_004337688.1| - 2.3e-08 33.1 0.4 0.0018 17.1 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain LppC PF04348.8 gi|327310791|ref|YP_004337688.1| - 5.2e-07 28.6 0.1 7.2e-07 28.1 0.1 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein BPD_transp_2 PF02653.11 gi|327310793|ref|YP_004337690.1| - 5.9e-36 123.8 38.5 7.8e-36 123.4 26.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|327310794|ref|YP_004337691.1| - 9.7e-39 132.9 40.0 9.7e-39 132.9 27.7 2.3 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|327310795|ref|YP_004337692.1| - 1.6e-39 136.2 6.9 2.2e-39 135.7 4.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|327310795|ref|YP_004337692.1| - 2.8e-35 121.7 0.6 9.3e-35 120.0 0.4 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|327310795|ref|YP_004337692.1| - 3.5e-09 35.8 0.1 1.2e-05 24.3 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain SoxE PF06525.6 gi|327310795|ref|YP_004337692.1| - 0.036 13.3 1.8 0.074 12.3 1.2 1.5 1 0 0 1 1 1 0 Sulfocyanin (SoxE) OAD_gamma PF04277.8 gi|327310795|ref|YP_004337692.1| - 1 9.7 6.1 0.95 9.8 1.5 2.4 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain CBS PF00571.23 gi|327310796|ref|YP_004337693.1| - 6e-36 121.9 5.7 2e-18 65.8 0.3 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.11 gi|327310796|ref|YP_004337693.1| - 0.012 15.5 0.1 0.85 9.5 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain DUF3659 PF12396.3 gi|327310796|ref|YP_004337693.1| - 0.029 14.0 0.3 1.9 8.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Thermopsin PF05317.6 gi|327310797|ref|YP_004337694.1| - 3.9e-45 153.8 0.0 8.3e-45 152.7 0.0 1.6 1 0 0 1 1 1 1 Thermopsin Aminotran_1_2 PF00155.16 gi|327310798|ref|YP_004337695.1| - 6.9e-17 61.4 0.0 4.3e-14 52.2 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II DUF3800 PF12686.2 gi|327310799|ref|YP_004337696.1| - 0.00023 20.8 0.0 0.019 14.5 0.0 2.5 2 1 0 2 2 2 2 Protein of unknown function (DUF3800) PA14 PF07691.7 gi|327310801|ref|YP_004337698.1| - 0.00041 20.0 0.1 0.0011 18.5 0.0 1.7 1 0 0 1 1 1 1 PA14 domain DUF1628 PF07790.6 gi|327310802|ref|YP_004337699.1| - 0.0017 19.0 1.3 0.0038 17.9 0.4 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF3301 PF11743.3 gi|327310802|ref|YP_004337699.1| - 0.0032 16.9 0.4 0.0045 16.4 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3301) NDUF_B12 PF08122.7 gi|327310802|ref|YP_004337699.1| - 0.39 10.4 1.6 3.4 7.4 0.1 2.3 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family Potass_KdpF PF09604.5 gi|327310802|ref|YP_004337699.1| - 7.6 6.5 9.0 21 5.0 6.2 1.7 1 0 0 1 1 1 0 F subunit of K+-transporting ATPase (Potass_KdpF) DUF1628 PF07790.6 gi|327310803|ref|YP_004337700.1| - 0.00075 20.1 0.6 0.0017 19.0 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF3185 PF11381.3 gi|327310803|ref|YP_004337700.1| - 0.54 10.0 4.8 0.96 9.2 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF973 PF06157.6 gi|327310803|ref|YP_004337700.1| - 4.9 6.0 12.2 0.11 11.4 1.3 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF973) T2SF PF00482.18 gi|327310804|ref|YP_004337701.1| - 2.5e-11 43.5 0.3 5.1e-11 42.5 0.2 1.5 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F GtrA PF04138.9 gi|327310804|ref|YP_004337701.1| - 2.4 8.1 9.1 0.34 10.8 0.5 3.0 2 1 1 3 3 3 0 GtrA-like protein T2SE PF00437.15 gi|327310805|ref|YP_004337702.1| - 1.8e-51 174.6 0.0 2.6e-51 174.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|327310805|ref|YP_004337702.1| - 6.1e-07 29.8 0.0 1.1e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|327310805|ref|YP_004337702.1| - 3e-05 24.4 0.1 6.6e-05 23.3 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.1 gi|327310805|ref|YP_004337702.1| - 5.5e-05 22.6 0.0 0.00012 21.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|327310805|ref|YP_004337702.1| - 0.00027 21.7 0.8 0.0019 18.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|327310805|ref|YP_004337702.1| - 0.00029 21.1 0.0 0.00069 19.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|327310805|ref|YP_004337702.1| - 0.00046 20.2 0.0 0.00081 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327310805|ref|YP_004337702.1| - 0.00066 19.7 0.0 0.003 17.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|327310805|ref|YP_004337702.1| - 0.0011 18.5 0.0 0.003 17.0 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_19 PF13245.1 gi|327310805|ref|YP_004337702.1| - 0.0012 18.5 0.0 0.0062 16.2 0.0 2.2 2 0 0 2 2 1 1 Part of AAA domain cobW PF02492.14 gi|327310805|ref|YP_004337702.1| - 0.0016 17.9 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|327310805|ref|YP_004337702.1| - 0.0019 18.3 0.0 0.0063 16.6 0.0 1.8 2 0 0 2 2 1 1 AAA domain MMR_HSR1 PF01926.18 gi|327310805|ref|YP_004337702.1| - 0.002 18.0 0.0 0.0048 16.8 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|327310805|ref|YP_004337702.1| - 0.0022 17.4 1.7 0.0048 16.3 0.2 2.3 2 1 0 2 2 1 1 FtsK/SpoIIIE family Miro PF08477.8 gi|327310805|ref|YP_004337702.1| - 0.0042 17.5 0.0 0.0079 16.6 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein DUF258 PF03193.11 gi|327310805|ref|YP_004337702.1| - 0.0043 16.2 0.0 0.0072 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|327310805|ref|YP_004337702.1| - 0.0048 16.3 0.0 0.0087 15.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain Zeta_toxin PF06414.7 gi|327310805|ref|YP_004337702.1| - 0.0064 15.6 0.0 0.014 14.4 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.12 gi|327310805|ref|YP_004337702.1| - 0.0076 15.6 0.0 0.016 14.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|327310805|ref|YP_004337702.1| - 0.0092 15.8 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain Guanylate_kin PF00625.16 gi|327310805|ref|YP_004337702.1| - 0.0099 15.3 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 1 Guanylate kinase AAA_28 PF13521.1 gi|327310805|ref|YP_004337702.1| - 0.013 15.4 1.8 0.035 14.0 0.0 2.5 3 0 0 3 3 3 0 AAA domain MobB PF03205.9 gi|327310805|ref|YP_004337702.1| - 0.017 14.8 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.4 gi|327310805|ref|YP_004337702.1| - 0.018 13.7 0.0 0.028 13.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_25 PF13481.1 gi|327310805|ref|YP_004337702.1| - 0.018 14.4 0.0 0.086 12.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|327310805|ref|YP_004337702.1| - 0.019 14.8 0.0 0.045 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|327310805|ref|YP_004337702.1| - 0.022 14.2 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase ResIII PF04851.10 gi|327310805|ref|YP_004337702.1| - 0.028 14.2 0.1 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Mg_chelatase PF01078.16 gi|327310805|ref|YP_004337702.1| - 0.035 13.2 0.0 0.06 12.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|327310805|ref|YP_004337702.1| - 0.041 13.4 0.0 0.14 11.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|327310805|ref|YP_004337702.1| - 0.041 13.5 0.0 0.095 12.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Dynamin_N PF00350.18 gi|327310805|ref|YP_004337702.1| - 0.045 13.5 0.0 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 Dynamin family Septin PF00735.13 gi|327310805|ref|YP_004337702.1| - 0.056 12.4 0.0 0.092 11.7 0.0 1.3 1 0 0 1 1 1 0 Septin AAA_5 PF07728.9 gi|327310805|ref|YP_004337702.1| - 0.064 12.9 0.0 0.16 11.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|327310805|ref|YP_004337702.1| - 0.064 12.7 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation PCMT PF01135.14 gi|327310805|ref|YP_004337702.1| - 0.072 12.6 0.1 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SRPRB PF09439.5 gi|327310805|ref|YP_004337702.1| - 0.074 12.2 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit SpoOE-like PF09388.5 gi|327310805|ref|YP_004337702.1| - 0.078 12.5 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 Spo0E like sporulation regulatory protein SMC_N PF02463.14 gi|327310805|ref|YP_004337702.1| - 0.091 11.9 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.1 gi|327310805|ref|YP_004337702.1| - 0.096 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|327310805|ref|YP_004337702.1| - 0.15 11.4 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP-synt_ab PF00006.20 gi|327310805|ref|YP_004337702.1| - 0.18 11.3 0.0 0.39 10.1 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SF PF00482.18 gi|327310806|ref|YP_004337703.1| - 1.1e-12 47.9 3.5 1.1e-12 47.9 2.4 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F HTH_19 PF12844.2 gi|327310807|ref|YP_004337704.1| - 0.04 13.9 0.0 0.048 13.7 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain Slx4 PF09494.5 gi|327310807|ref|YP_004337704.1| - 0.089 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Slx4 endonuclease KaiC PF06745.8 gi|327310808|ref|YP_004337705.1| - 6.2e-28 97.4 1.0 2e-18 66.3 0.0 3.8 2 2 1 3 3 3 3 KaiC AAA_25 PF13481.1 gi|327310808|ref|YP_004337705.1| - 5.1e-16 58.6 2.9 3.1e-09 36.5 0.1 2.6 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|327310808|ref|YP_004337705.1| - 2.8e-15 56.6 0.0 6e-08 32.8 0.0 2.6 2 1 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|327310808|ref|YP_004337705.1| - 1.4e-08 34.5 1.7 0.0031 17.1 0.4 3.6 2 2 0 2 2 2 2 NACHT domain AAA_17 PF13207.1 gi|327310808|ref|YP_004337705.1| - 6.5e-08 33.4 0.3 0.0053 17.5 0.0 2.6 2 1 0 2 2 2 2 AAA domain GvpD PF07088.6 gi|327310808|ref|YP_004337705.1| - 8.3e-08 30.9 0.3 9.6e-07 27.4 0.0 2.4 3 0 0 3 3 3 1 GvpD gas vesicle protein AAA_14 PF13173.1 gi|327310808|ref|YP_004337705.1| - 1.2e-07 31.6 0.0 0.01 15.7 0.0 2.3 2 1 0 2 2 2 2 AAA domain AAA PF00004.24 gi|327310808|ref|YP_004337705.1| - 3.3e-07 30.5 0.0 0.0062 16.7 0.0 2.4 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|327310808|ref|YP_004337705.1| - 6.3e-07 28.8 0.8 0.015 14.8 0.6 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|327310808|ref|YP_004337705.1| - 1.3e-06 28.3 0.1 0.0012 18.5 0.0 2.5 3 0 0 3 3 2 1 Archaeal ATPase AAA_19 PF13245.1 gi|327310808|ref|YP_004337705.1| - 1.9e-06 27.5 1.0 0.037 13.7 0.1 3.1 3 0 0 3 3 2 2 Part of AAA domain AAA_33 PF13671.1 gi|327310808|ref|YP_004337705.1| - 2.9e-06 27.2 0.1 0.03 14.1 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|327310808|ref|YP_004337705.1| - 5.9e-06 26.0 0.6 0.011 15.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|327310808|ref|YP_004337705.1| - 1.1e-05 25.0 0.3 0.019 14.4 0.1 2.4 3 0 0 3 3 2 2 AAA-like domain RecA PF00154.16 gi|327310808|ref|YP_004337705.1| - 1.9e-05 23.8 0.3 0.017 14.2 0.1 2.4 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_23 PF13476.1 gi|327310808|ref|YP_004337705.1| - 2.5e-05 24.7 1.4 0.034 14.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|327310808|ref|YP_004337705.1| - 3.3e-05 23.9 0.1 0.12 12.3 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain MobB PF03205.9 gi|327310808|ref|YP_004337705.1| - 7.5e-05 22.4 0.2 0.0045 16.7 0.0 2.6 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.11 gi|327310808|ref|YP_004337705.1| - 0.00012 21.4 0.7 0.01 15.1 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein SRP54 PF00448.17 gi|327310808|ref|YP_004337705.1| - 0.00017 21.1 0.2 0.15 11.4 0.1 2.4 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain ABC_tran PF00005.22 gi|327310808|ref|YP_004337705.1| - 0.0002 21.6 1.3 0.061 13.6 0.3 2.4 2 0 0 2 2 2 1 ABC transporter T2SE PF00437.15 gi|327310808|ref|YP_004337705.1| - 0.00051 19.0 1.0 0.66 8.8 0.7 2.7 2 1 0 2 2 2 2 Type II/IV secretion system protein ATP_bind_1 PF03029.12 gi|327310808|ref|YP_004337705.1| - 0.00056 19.5 0.1 0.61 9.5 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|327310808|ref|YP_004337705.1| - 0.00074 19.8 0.2 0.12 12.6 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_24 PF13479.1 gi|327310808|ref|YP_004337705.1| - 0.00075 19.1 7.2 0.0072 15.9 0.1 3.8 3 3 0 3 3 3 1 AAA domain AAA_5 PF07728.9 gi|327310808|ref|YP_004337705.1| - 0.0017 18.0 0.0 0.15 11.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) APS_kinase PF01583.15 gi|327310808|ref|YP_004337705.1| - 0.0028 17.3 0.1 0.12 11.9 0.0 2.5 3 0 0 3 3 2 1 Adenylylsulphate kinase IstB_IS21 PF01695.12 gi|327310808|ref|YP_004337705.1| - 0.004 16.5 0.7 2.2 7.6 0.0 3.1 3 0 0 3 3 3 1 IstB-like ATP binding protein NTPase_1 PF03266.10 gi|327310808|ref|YP_004337705.1| - 0.0054 16.4 0.6 0.18 11.5 0.0 2.8 3 0 0 3 3 3 1 NTPase RNA_helicase PF00910.17 gi|327310808|ref|YP_004337705.1| - 0.0055 16.8 0.4 3.5 7.8 0.0 2.3 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.17 gi|327310808|ref|YP_004337705.1| - 0.0062 15.4 0.4 0.42 9.4 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain cobW PF02492.14 gi|327310808|ref|YP_004337705.1| - 0.015 14.7 0.3 3 7.2 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|327310808|ref|YP_004337705.1| - 0.018 14.2 0.1 1 8.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DEAD PF00270.24 gi|327310808|ref|YP_004337705.1| - 0.032 13.7 0.0 4.8 6.6 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase UPF0079 PF02367.12 gi|327310808|ref|YP_004337705.1| - 0.035 13.7 1.0 3.3 7.3 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_21 PF13304.1 gi|327310808|ref|YP_004337705.1| - 0.037 13.9 0.0 0.65 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|327310808|ref|YP_004337705.1| - 0.038 13.2 0.1 1.7 7.8 0.1 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain TK PF00265.13 gi|327310808|ref|YP_004337705.1| - 0.047 13.2 0.0 0.32 10.5 0.0 2.2 2 0 0 2 2 2 0 Thymidine kinase DUF2075 PF09848.4 gi|327310808|ref|YP_004337705.1| - 0.053 12.4 0.0 7.5 5.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Miro PF08477.8 gi|327310808|ref|YP_004337705.1| - 0.09 13.2 0.0 5.5 7.5 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein CobU PF02283.11 gi|327310808|ref|YP_004337705.1| - 0.12 11.8 1.0 11 5.4 0.1 2.8 2 1 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ResIII PF04851.10 gi|327310808|ref|YP_004337705.1| - 0.12 12.1 0.3 0.93 9.2 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Rad51 PF08423.6 gi|327310808|ref|YP_004337705.1| - 0.15 10.9 0.8 1.3 7.8 0.0 2.5 2 1 0 2 2 2 0 Rad51 AAA_13 PF13166.1 gi|327310808|ref|YP_004337705.1| - 0.16 10.3 0.1 0.28 9.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|327310808|ref|YP_004337705.1| - 0.68 9.3 2.3 12 5.3 0.2 2.4 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Ammonium_transp PF00909.16 gi|327310809|ref|YP_004337706.1| - 5.4e-73 245.7 25.8 7.7e-73 245.2 17.9 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|327310810|ref|YP_004337707.1| - 3e-26 91.8 0.3 3.4e-26 91.6 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF190 PF02641.10 gi|327310810|ref|YP_004337707.1| - 4.4e-06 26.4 0.2 5.4e-06 26.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 DUF970 PF06153.6 gi|327310810|ref|YP_004337707.1| - 0.036 14.0 0.2 0.51 10.3 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF970) NAD_synthase PF02540.12 gi|327310811|ref|YP_004337708.1| - 1.4e-75 253.3 0.0 1.6e-75 253.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|327310811|ref|YP_004337708.1| - 7.3e-06 24.7 0.0 0.0062 15.1 0.1 2.3 2 1 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|327310811|ref|YP_004337708.1| - 8.6e-05 21.9 0.0 0.00012 21.3 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|327310811|ref|YP_004337708.1| - 0.003 17.0 0.0 0.0041 16.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|327310811|ref|YP_004337708.1| - 0.15 11.5 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 PP-loop family Arch_ATPase PF01637.13 gi|327310812|ref|YP_004337709.1| - 1.5e-53 181.8 0.0 1.9e-53 181.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|327310812|ref|YP_004337709.1| - 0.0015 18.5 0.6 0.0043 17.0 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain DEDD_Tnp_IS110 PF01548.12 gi|327310812|ref|YP_004337709.1| - 0.0017 18.0 0.0 0.048 13.3 0.0 2.6 2 1 1 3 3 3 1 Transposase AAA_17 PF13207.1 gi|327310812|ref|YP_004337709.1| - 0.004 17.9 0.2 0.018 15.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|327310812|ref|YP_004337709.1| - 0.023 14.8 0.0 0.042 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|327310812|ref|YP_004337709.1| - 0.062 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|327310812|ref|YP_004337709.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|327310812|ref|YP_004337709.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain XdhC_CoxI PF02625.11 gi|327310812|ref|YP_004337709.1| - 0.15 11.6 1.3 6.3 6.4 0.1 2.5 2 0 0 2 2 2 0 XdhC and CoxI family AMP-binding PF00501.23 gi|327310813|ref|YP_004337710.1| - 6.9e-91 304.6 0.0 9.2e-91 304.2 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|327310813|ref|YP_004337710.1| - 8e-21 74.7 2.2 2.2e-20 73.3 1.5 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3368 PF11848.3 gi|327310816|ref|YP_004337713.1| - 0.001 18.5 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) GHMP_kinases_C PF08544.8 gi|327310816|ref|YP_004337713.1| - 0.091 12.9 0.0 0.1 12.7 0.0 1.3 1 1 0 1 1 1 0 GHMP kinases C terminal Methyltransf_23 PF13489.1 gi|327310817|ref|YP_004337714.1| - 4.1e-09 36.3 0.0 6.2e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327310817|ref|YP_004337714.1| - 2e-05 24.9 0.0 4.6e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|327310817|ref|YP_004337714.1| - 0.00085 19.7 0.0 0.0018 18.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327310817|ref|YP_004337714.1| - 0.0062 17.0 0.0 0.012 16.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Fn3-like PF14310.1 gi|327310818|ref|YP_004337715.1| - 0.035 14.0 1.0 7.9 6.5 0.0 2.7 2 0 0 2 2 2 0 Fibronectin type III-like domain FHA PF00498.21 gi|327310819|ref|YP_004337716.1| - 7.2e-14 51.6 0.0 2.2e-13 50.1 0.0 1.8 2 0 0 2 2 2 1 FHA domain VWA_2 PF13519.1 gi|327310820|ref|YP_004337717.1| - 3.8e-20 72.6 0.0 1e-19 71.2 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|327310820|ref|YP_004337717.1| - 8.5e-13 48.3 0.0 1.5e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|327310820|ref|YP_004337717.1| - 1.5e-12 47.4 0.0 3.6e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain FHA PF00498.21 gi|327310820|ref|YP_004337717.1| - 3.5e-07 30.2 0.0 2.5e-06 27.4 0.0 2.1 2 0 0 2 2 2 1 FHA domain Radical_SAM PF04055.16 gi|327310820|ref|YP_004337717.1| - 0.16 12.1 0.0 0.59 10.2 0.0 1.9 2 0 0 2 2 2 0 Radical SAM superfamily DUF445 PF04286.7 gi|327310821|ref|YP_004337718.1| - 1.9e-06 27.6 0.0 6.4e-05 22.6 0.0 2.5 3 0 0 3 3 3 2 Protein of unknown function (DUF445) DsbB PF02600.11 gi|327310826|ref|YP_004337723.1| - 0.13 12.0 0.5 0.38 10.5 0.1 1.8 3 0 0 3 3 3 0 Disulfide bond formation protein DsbB DoxA PF07680.6 gi|327310828|ref|YP_004337725.1| - 0.011 15.3 0.2 0.23 11.1 0.1 2.1 1 1 1 2 2 2 0 TQO small subunit DoxA CytochromB561_N PF09786.4 gi|327310828|ref|YP_004337725.1| - 0.032 12.7 0.2 0.037 12.5 0.1 1.1 1 0 0 1 1 1 0 Cytochrome B561, N terminal PepSY_TM_2 PF13703.1 gi|327310828|ref|YP_004337725.1| - 0.12 12.5 1.3 0.35 11.0 0.9 1.8 1 1 0 1 1 1 0 PepSY-associated TM helix DUF1628 PF07790.6 gi|327310828|ref|YP_004337725.1| - 1.7 9.4 5.5 2.9 8.6 2.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) Uroplakin_II PF07353.7 gi|327310828|ref|YP_004337725.1| - 3.9 6.7 10.2 0.82 8.9 0.7 2.8 3 0 0 3 3 3 0 Uroplakin II T2SE PF00437.15 gi|327310829|ref|YP_004337726.1| - 6e-34 117.1 0.0 9e-34 116.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein FHA PF00498.21 gi|327310829|ref|YP_004337726.1| - 3e-11 43.2 0.0 6.2e-11 42.2 0.0 1.5 1 0 0 1 1 1 1 FHA domain Sigma54_activ_2 PF14532.1 gi|327310829|ref|YP_004337726.1| - 0.0035 17.3 0.0 0.011 15.8 0.0 1.9 1 0 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|327310829|ref|YP_004337726.1| - 0.027 13.9 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|327310829|ref|YP_004337726.1| - 0.16 11.0 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|327310829|ref|YP_004337726.1| - 0.17 12.2 0.0 0.39 11.0 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|327310829|ref|YP_004337726.1| - 0.17 11.4 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SF PF00482.18 gi|327310830|ref|YP_004337727.1| - 2e-12 47.1 6.9 1.3e-10 41.2 0.8 2.8 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F PP2C_2 PF13672.1 gi|327310831|ref|YP_004337728.1| - 2e-13 50.2 0.2 4.6e-13 49.0 0.1 1.5 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.7 gi|327310831|ref|YP_004337728.1| - 3.8e-08 33.2 0.5 8.2e-08 32.1 0.4 1.6 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) PP2C PF00481.16 gi|327310831|ref|YP_004337728.1| - 0.0025 17.2 0.0 0.0043 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein phosphatase 2C Pkinase PF00069.20 gi|327310832|ref|YP_004337729.1| - 4.6e-36 124.2 0.0 5.9e-36 123.9 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|327310832|ref|YP_004337729.1| - 2.9e-20 72.4 0.0 3.6e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.21 gi|327310832|ref|YP_004337729.1| - 2.2e-08 34.1 0.0 4.1e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 FHA domain APH PF01636.18 gi|327310832|ref|YP_004337729.1| - 0.00023 21.0 0.0 0.0017 18.1 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|327310832|ref|YP_004337729.1| - 0.16 11.2 0.0 0.3 10.3 0.0 1.4 1 0 0 1 1 1 0 RIO1 family CARDB PF07705.6 gi|327310833|ref|YP_004337730.1| - 2.7e-08 33.7 13.8 3.4e-05 23.8 1.0 4.8 5 1 1 6 6 6 2 CARDB Transglut_C PF00927.17 gi|327310833|ref|YP_004337730.1| - 4.4e-06 26.6 0.8 0.049 13.6 0.1 2.9 2 0 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain PKD PF00801.15 gi|327310833|ref|YP_004337730.1| - 8.1e-06 25.5 0.5 8.1e-06 25.5 0.3 6.6 3 2 1 5 5 4 1 PKD domain Flg_new PF09479.5 gi|327310833|ref|YP_004337730.1| - 0.00012 21.9 9.5 1.7 8.7 0.1 5.6 5 0 0 5 5 5 2 Listeria-Bacteroides repeat domain (List_Bact_rpt) FixG_C PF11614.3 gi|327310833|ref|YP_004337730.1| - 0.00013 22.0 0.4 0.028 14.4 0.0 3.8 4 1 0 4 4 4 1 IG-like fold at C-terminal of FixG, putative oxidoreductase BsuPI PF12690.2 gi|327310833|ref|YP_004337730.1| - 0.0021 17.7 0.6 5.2 6.8 0.0 3.8 3 1 0 3 3 3 2 Intracellular proteinase inhibitor DUF11 PF01345.13 gi|327310833|ref|YP_004337730.1| - 0.0066 16.4 0.0 0.0066 16.4 0.0 5.8 3 1 1 4 4 4 1 Domain of unknown function DUF11 DUF1034 PF06280.7 gi|327310833|ref|YP_004337730.1| - 0.017 15.4 0.5 0.017 15.4 0.3 5.1 5 2 1 6 6 6 0 Fn3-like domain (DUF1034) DUF756 PF05506.7 gi|327310833|ref|YP_004337730.1| - 0.022 15.2 0.7 0.64 10.5 0.1 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF756) LEA_2 PF03168.8 gi|327310833|ref|YP_004337730.1| - 0.023 15.0 1.0 1.9 8.8 0.2 3.9 3 0 0 3 3 3 0 Late embryogenesis abundant protein Filamin PF00630.14 gi|327310833|ref|YP_004337730.1| - 0.033 14.7 1.0 4 8.0 0.3 3.9 1 1 1 2 2 2 0 Filamin/ABP280 repeat Rad51 PF08423.6 gi|327310834|ref|YP_004337731.1| - 1e-38 132.7 0.0 1.3e-38 132.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 KaiC PF06745.8 gi|327310834|ref|YP_004337731.1| - 1.8e-10 40.3 0.0 2.6e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|327310834|ref|YP_004337731.1| - 2.9e-08 33.3 0.1 4.7e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|327310834|ref|YP_004337731.1| - 3.6e-06 26.2 0.0 4.7e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.1 gi|327310834|ref|YP_004337731.1| - 4.9e-05 23.4 1.3 0.0001 22.4 0.1 2.1 2 1 0 2 2 2 1 Helix-hairpin-helix domain AAA_10 PF12846.2 gi|327310834|ref|YP_004337731.1| - 0.00038 19.9 0.0 0.00061 19.3 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA PF00004.24 gi|327310834|ref|YP_004337731.1| - 0.091 12.9 0.0 0.25 11.5 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|327310834|ref|YP_004337731.1| - 0.17 10.7 0.0 0.22 10.3 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain Antimicrobial15 PF08110.7 gi|327310834|ref|YP_004337731.1| - 0.31 11.1 2.1 17 5.6 0.1 2.8 2 0 0 2 2 2 0 Ocellatin family Mito_fiss_reg PF05308.6 gi|327310835|ref|YP_004337732.1| - 0.0082 15.5 1.5 0.013 14.9 1.0 1.3 1 0 0 1 1 1 1 Mitochondrial fission regulator EzrA PF06160.7 gi|327310835|ref|YP_004337732.1| - 0.01 14.0 9.4 0.0097 14.1 4.1 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF4446 PF14584.1 gi|327310835|ref|YP_004337732.1| - 0.12 12.2 5.9 0.26 11.1 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Tropomyosin PF00261.15 gi|327310835|ref|YP_004337732.1| - 0.2 10.7 22.1 0.16 11.0 13.8 2.0 1 1 0 1 1 1 0 Tropomyosin APG6 PF04111.7 gi|327310835|ref|YP_004337732.1| - 1.1 8.2 14.0 1.7 7.5 9.7 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 Taxilin PF09728.4 gi|327310835|ref|YP_004337732.1| - 3.1 6.8 19.2 5.3 6.0 13.1 1.6 1 1 1 2 2 2 0 Myosin-like coiled-coil protein Occludin_ELL PF07303.8 gi|327310835|ref|YP_004337732.1| - 3.4 8.4 10.8 8.3 7.2 0.2 3.0 1 1 2 3 3 3 0 Occludin homology domain FadA PF09403.5 gi|327310835|ref|YP_004337732.1| - 6.5 6.7 20.2 8.7 6.3 4.7 2.6 1 1 2 3 3 3 0 Adhesion protein FadA Acyl-CoA_dh_1 PF00441.19 gi|327310836|ref|YP_004337733.1| - 2.7e-45 154.1 2.2 3.3e-45 153.8 0.4 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|327310836|ref|YP_004337733.1| - 2e-30 105.6 1.1 4.4e-30 104.5 0.8 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|327310836|ref|YP_004337733.1| - 1.5e-19 70.5 1.6 1.5e-19 70.5 1.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|327310836|ref|YP_004337733.1| - 8.1e-19 66.8 0.3 1.6e-18 65.9 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.19 gi|327310837|ref|YP_004337734.1| - 6.6e-35 120.4 3.6 9.4e-35 119.9 2.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|327310837|ref|YP_004337734.1| - 1.7e-23 83.3 0.4 4.3e-23 82.0 0.1 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|327310837|ref|YP_004337734.1| - 1e-13 50.5 0.2 2.3e-13 49.4 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|327310837|ref|YP_004337734.1| - 2.3e-13 50.5 2.6 3.9e-13 49.7 1.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF35_N PF12172.3 gi|327310838|ref|YP_004337735.1| - 4.9e-13 48.5 2.8 1e-12 47.5 2.0 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|327310838|ref|YP_004337735.1| - 1.8e-10 40.9 4.6 2.6e-10 40.3 3.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|327310838|ref|YP_004337735.1| - 0.024 14.4 0.4 0.035 13.9 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|327310838|ref|YP_004337735.1| - 0.034 13.3 0.4 3.7 6.8 0.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-FPG_IleRS PF06827.9 gi|327310838|ref|YP_004337735.1| - 0.75 9.4 3.7 3.3 7.4 0.1 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.1 gi|327310838|ref|YP_004337735.1| - 1.5 8.3 6.0 1.5 8.3 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327310838|ref|YP_004337735.1| - 2 7.8 6.0 4.7 6.6 0.1 2.5 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|327310838|ref|YP_004337735.1| - 2.6 7.3 7.6 6.8 6.0 5.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|327310838|ref|YP_004337735.1| - 3.3 7.5 5.3 12 5.8 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Thiolase_C PF02803.13 gi|327310839|ref|YP_004337736.1| - 1.6e-09 37.2 0.1 3.2e-09 36.2 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|327310839|ref|YP_004337736.1| - 1.4e-05 24.2 3.3 5.2e-05 22.3 1.0 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|327310839|ref|YP_004337736.1| - 6e-05 22.6 1.1 6e-05 22.6 0.7 1.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|327310839|ref|YP_004337736.1| - 0.022 14.6 6.0 0.27 11.0 0.0 3.4 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|327310839|ref|YP_004337736.1| - 0.39 10.3 3.9 2.1 8.0 0.7 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CBS PF00571.23 gi|327310840|ref|YP_004337737.1| - 1.4e-28 98.4 2.8 1.6e-13 50.2 0.0 2.1 2 0 0 2 2 2 2 CBS domain DisA_N PF02457.11 gi|327310840|ref|YP_004337737.1| - 0.048 12.7 0.0 0.091 11.9 0.0 1.5 1 1 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding CBS PF00571.23 gi|327310841|ref|YP_004337738.1| - 3.4e-30 103.5 9.3 1.4e-15 56.7 0.7 2.1 2 0 0 2 2 2 2 CBS domain PEPcase_2 PF14010.1 gi|327310842|ref|YP_004337739.1| - 2.8e-136 454.7 0.1 3.1e-136 454.5 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase CRAL_TRIO_N PF03765.10 gi|327310842|ref|YP_004337739.1| - 0.079 13.1 0.5 0.2 11.8 0.3 1.7 1 0 0 1 1 1 0 CRAL/TRIO, N-terminal domain PEPcase PF00311.12 gi|327310842|ref|YP_004337739.1| - 0.11 10.2 0.0 0.29 8.9 0.0 1.6 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxylase ADH_zinc_N PF00107.21 gi|327310843|ref|YP_004337740.1| - 1.1e-32 112.2 4.9 1.9e-32 111.5 3.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|327310843|ref|YP_004337740.1| - 1.3e-27 95.7 0.0 1.3e-27 95.7 0.0 2.1 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|327310843|ref|YP_004337740.1| - 2.9e-12 47.6 1.0 2.9e-12 47.6 0.7 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|327310843|ref|YP_004337740.1| - 1.1e-07 31.6 2.6 1.8e-07 30.8 1.8 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|327310843|ref|YP_004337740.1| - 1.8e-06 28.1 2.9 1.9e-05 24.7 2.5 2.1 2 0 0 2 2 2 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|327310843|ref|YP_004337740.1| - 0.00012 21.2 0.4 0.00022 20.4 0.3 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|327310843|ref|YP_004337740.1| - 0.0012 18.8 2.6 0.002 18.0 1.8 1.4 1 0 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.15 gi|327310843|ref|YP_004337740.1| - 0.011 15.8 0.5 0.024 14.7 0.3 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Met_10 PF02475.11 gi|327310843|ref|YP_004337740.1| - 0.039 13.5 0.3 0.066 12.7 0.2 1.3 1 0 0 1 1 1 0 Met-10+ like-protein ApbA PF02558.11 gi|327310843|ref|YP_004337740.1| - 0.051 13.0 0.7 0.1 12.0 0.5 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Methyltransf_18 PF12847.2 gi|327310843|ref|YP_004337740.1| - 0.054 14.0 0.1 0.13 12.8 0.1 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|327310843|ref|YP_004337740.1| - 0.066 13.2 1.3 0.18 11.8 0.9 1.7 1 0 0 1 1 1 0 Methyltransferase domain ELFV_dehydrog PF00208.16 gi|327310843|ref|YP_004337740.1| - 0.072 12.6 0.9 0.11 12.1 0.6 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|327310843|ref|YP_004337740.1| - 0.1 11.9 0.7 0.17 11.2 0.5 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|327310843|ref|YP_004337740.1| - 0.15 11.7 5.8 0.55 9.8 4.0 1.9 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|327310843|ref|YP_004337740.1| - 0.93 8.6 2.8 1.5 8.0 1.9 1.3 1 0 0 1 1 1 0 NmrA-like family PUA PF01472.15 gi|327310843|ref|YP_004337740.1| - 0.99 9.1 10.0 0.93 9.2 2.8 3.4 2 1 1 3 3 3 0 PUA domain Fer2_3 PF13085.1 gi|327310844|ref|YP_004337741.1| - 3.9e-27 94.2 0.1 4.5e-27 94.0 0.1 1.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.22 gi|327310844|ref|YP_004337741.1| - 4.9e-08 32.6 0.2 8.8e-08 31.7 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|327310844|ref|YP_004337741.1| - 0.011 15.5 0.1 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|327310844|ref|YP_004337741.1| - 0.016 14.6 2.1 0.031 13.7 1.4 1.5 1 0 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CtsR PF05848.6 gi|327310844|ref|YP_004337741.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Firmicute transcriptional repressor of class III stress genes (CtsR) FAD_binding_2 PF00890.19 gi|327310845|ref|YP_004337742.1| - 4e-107 358.6 2.2 4.9e-107 358.3 1.6 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|327310845|ref|YP_004337742.1| - 1.6e-34 118.5 0.0 2.4e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|327310845|ref|YP_004337742.1| - 1.5e-06 28.2 3.6 0.00029 20.7 2.5 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|327310845|ref|YP_004337742.1| - 8.7e-05 21.5 7.1 0.0039 16.1 4.1 3.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|327310845|ref|YP_004337742.1| - 0.00057 19.0 1.0 0.0043 16.1 0.3 2.2 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|327310845|ref|YP_004337742.1| - 0.0024 16.8 0.4 0.0038 16.2 0.3 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|327310845|ref|YP_004337742.1| - 0.011 14.2 0.2 0.042 12.3 0.4 1.7 2 0 0 2 2 2 0 HI0933-like protein FAD_binding_3 PF01494.14 gi|327310845|ref|YP_004337742.1| - 0.012 14.6 0.6 0.019 14.0 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain GIDA PF01134.17 gi|327310845|ref|YP_004337742.1| - 0.019 13.8 2.5 0.029 13.2 1.7 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|327310845|ref|YP_004337742.1| - 0.067 13.2 2.8 0.095 12.7 0.7 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|327310845|ref|YP_004337742.1| - 0.26 10.3 3.1 0.53 9.2 2.2 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase CBS PF00571.23 gi|327310846|ref|YP_004337743.1| - 1.8e-30 104.4 3.9 2.1e-14 52.9 0.1 2.1 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|327310846|ref|YP_004337743.1| - 0.00014 21.8 0.0 0.16 12.0 0.0 2.3 2 0 0 2 2 2 2 Ribosomal protein L9, C-terminal domain HpaB_N PF11794.3 gi|327310847|ref|YP_004337744.1| - 3.4e-79 265.9 0.0 5.1e-79 265.3 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|327310847|ref|YP_004337744.1| - 4e-65 218.5 0.0 5.7e-65 217.9 0.0 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_1 PF00441.19 gi|327310847|ref|YP_004337744.1| - 0.00046 20.3 0.1 0.0011 19.0 0.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Aldedh PF00171.17 gi|327310849|ref|YP_004337746.1| - 5.6e-155 516.1 1.0 6.9e-155 515.8 0.7 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family HSBP1 PF06825.7 gi|327310850|ref|YP_004337747.1| - 0.12 11.9 1.3 0.47 10.0 0.8 2.0 1 1 1 2 2 2 0 Heat shock factor binding protein 1 AKNA PF12443.3 gi|327310851|ref|YP_004337748.1| - 0.0035 17.3 0.2 0.0059 16.6 0.2 1.5 1 1 0 1 1 1 1 AT-hook-containing transcription factor DASH_Spc34 PF08657.5 gi|327310851|ref|YP_004337748.1| - 0.028 14.0 0.7 0.039 13.6 0.5 1.2 1 0 0 1 1 1 0 DASH complex subunit Spc34 ZapA PF05164.8 gi|327310851|ref|YP_004337748.1| - 0.03 14.2 1.1 0.04 13.8 0.8 1.3 1 0 0 1 1 1 0 Cell division protein ZapA DSX_dimer PF08828.5 gi|327310851|ref|YP_004337748.1| - 0.037 13.5 2.7 0.97 9.0 0.6 2.4 1 1 1 2 2 2 0 Doublesex dimerisation domain TMF_DNA_bd PF12329.3 gi|327310851|ref|YP_004337748.1| - 0.037 13.8 3.0 0.11 12.2 0.8 2.0 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Spc24 PF08286.6 gi|327310851|ref|YP_004337748.1| - 0.041 13.5 0.9 0.072 12.7 0.6 1.3 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Cortex-I_coil PF09304.5 gi|327310851|ref|YP_004337748.1| - 0.049 13.6 3.2 0.057 13.4 2.2 1.1 1 0 0 1 1 1 0 Cortexillin I, coiled coil Flagellin_C PF00700.16 gi|327310851|ref|YP_004337748.1| - 0.05 13.7 0.2 0.088 12.9 0.1 1.5 2 0 0 2 2 1 0 Bacterial flagellin C-terminal helical region DivIVA PF05103.8 gi|327310851|ref|YP_004337748.1| - 0.053 13.5 0.6 0.053 13.5 0.5 1.5 2 0 0 2 2 2 0 DivIVA protein BBP1_C PF15272.1 gi|327310851|ref|YP_004337748.1| - 0.058 12.9 2.0 0.063 12.8 1.4 1.1 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal Val_tRNA-synt_C PF10458.4 gi|327310851|ref|YP_004337748.1| - 0.074 13.1 0.2 0.21 11.7 0.2 1.7 1 0 0 1 1 1 0 Valyl tRNA synthetase tRNA binding arm Lzipper-MIP1 PF14389.1 gi|327310851|ref|YP_004337748.1| - 0.076 13.1 0.5 0.1 12.7 0.3 1.2 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 DivIC PF04977.10 gi|327310851|ref|YP_004337748.1| - 0.08 12.4 2.1 0.086 12.3 1.0 1.5 1 1 0 1 1 1 0 Septum formation initiator Atg14 PF10186.4 gi|327310851|ref|YP_004337748.1| - 0.086 11.7 4.2 0.1 11.5 2.9 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 CorA PF01544.13 gi|327310851|ref|YP_004337748.1| - 0.11 11.5 1.9 0.12 11.4 1.3 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein XhlA PF10779.4 gi|327310851|ref|YP_004337748.1| - 0.14 12.1 6.0 0.38 10.6 2.7 2.1 2 0 0 2 2 2 0 Haemolysin XhlA DUF3552 PF12072.3 gi|327310851|ref|YP_004337748.1| - 0.15 11.2 4.4 0.18 11.0 3.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Mnd1 PF03962.10 gi|327310851|ref|YP_004337748.1| - 0.29 10.7 4.5 0.29 10.7 2.7 1.4 1 1 0 1 1 1 0 Mnd1 family HSBP1 PF06825.7 gi|327310851|ref|YP_004337748.1| - 0.38 10.3 3.3 1.2 8.7 2.3 1.9 1 1 0 1 1 1 0 Heat shock factor binding protein 1 IncA PF04156.9 gi|327310851|ref|YP_004337748.1| - 0.49 9.9 2.6 0.58 9.7 1.8 1.3 1 1 0 1 1 1 0 IncA protein CCDC-167 PF15188.1 gi|327310851|ref|YP_004337748.1| - 2.1 8.3 6.5 1.3 8.9 3.2 1.6 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 BacA PF02673.13 gi|327310852|ref|YP_004337749.1| - 4.4e-49 167.0 17.8 5.5e-49 166.6 12.4 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Glyco_hydro_15 PF00723.16 gi|327310853|ref|YP_004337750.1| - 1.4e-28 99.6 0.1 1e-22 80.3 0.2 2.5 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|327310853|ref|YP_004337750.1| - 5.7e-12 45.0 0.1 1.1e-11 44.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Bac_rhamnosid PF05592.6 gi|327310853|ref|YP_004337750.1| - 0.0029 15.9 0.0 0.0049 15.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase TPR_4 PF07721.9 gi|327310853|ref|YP_004337750.1| - 0.03 14.7 0.1 0.17 12.3 0.0 2.3 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|327310853|ref|YP_004337750.1| - 0.047 14.0 0.0 0.15 12.3 0.0 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|327310853|ref|YP_004337750.1| - 0.14 12.1 0.8 0.56 10.2 0.0 2.6 3 0 0 3 3 3 0 Tetratricopeptide repeat PfkB PF00294.19 gi|327310854|ref|YP_004337751.1| - 1.1e-46 159.3 0.0 1.2e-46 159.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DHDPS PF00701.17 gi|327310855|ref|YP_004337752.1| - 1.7e-47 161.3 0.0 2e-47 161.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF849 PF05853.7 gi|327310855|ref|YP_004337752.1| - 0.012 14.5 0.0 0.022 13.6 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) MR_MLE_C PF13378.1 gi|327310856|ref|YP_004337753.1| - 1.1e-23 83.3 0.0 1.8e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|327310856|ref|YP_004337753.1| - 6.7e-16 58.3 0.0 2.2e-15 56.7 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|327310856|ref|YP_004337753.1| - 4.6e-15 55.8 0.2 3.5e-14 53.0 0.1 2.5 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PP_kinase_C PF13090.1 gi|327310856|ref|YP_004337753.1| - 0.081 11.5 0.1 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain DNase-RNase PF02577.9 gi|327310857|ref|YP_004337754.1| - 6.5e-37 125.7 0.0 7.7e-37 125.5 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease Big_3_4 PF13754.1 gi|327310857|ref|YP_004337754.1| - 0.0081 16.4 0.4 0.055 13.8 0.2 2.0 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) FlgD_ig PF13860.1 gi|327310857|ref|YP_004337754.1| - 0.016 14.9 0.0 1 9.1 0.0 2.7 2 1 1 3 3 3 0 FlgD Ig-like domain AsnC_trans_reg PF01037.16 gi|327310858|ref|YP_004337755.1| - 3.5e-21 74.6 0.0 6.2e-21 73.8 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|327310858|ref|YP_004337755.1| - 3.6e-14 52.0 0.5 6.1e-14 51.2 0.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|327310858|ref|YP_004337755.1| - 2.3e-13 49.3 0.7 3.9e-13 48.5 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|327310858|ref|YP_004337755.1| - 2.6e-06 27.0 0.0 4.5e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|327310858|ref|YP_004337755.1| - 6.7e-06 25.7 0.2 1.6e-05 24.4 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|327310858|ref|YP_004337755.1| - 8.5e-05 22.8 0.1 0.00017 21.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|327310858|ref|YP_004337755.1| - 8.7e-05 22.0 0.2 0.00065 19.2 0.1 2.1 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|327310858|ref|YP_004337755.1| - 0.00022 20.8 0.0 0.00052 19.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|327310858|ref|YP_004337755.1| - 0.0017 18.1 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|327310858|ref|YP_004337755.1| - 0.0097 15.4 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|327310858|ref|YP_004337755.1| - 0.026 14.1 0.1 0.076 12.6 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|327310858|ref|YP_004337755.1| - 0.027 13.9 0.1 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_36 PF13730.1 gi|327310858|ref|YP_004337755.1| - 0.034 14.2 0.1 0.077 13.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|327310858|ref|YP_004337755.1| - 0.045 13.3 0.0 0.09 12.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|327310858|ref|YP_004337755.1| - 0.045 13.2 0.1 0.11 11.9 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|327310858|ref|YP_004337755.1| - 0.047 13.7 0.0 0.096 12.7 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_34 PF13601.1 gi|327310858|ref|YP_004337755.1| - 0.052 13.5 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|327310858|ref|YP_004337755.1| - 0.075 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|327310858|ref|YP_004337755.1| - 0.075 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain AsnC_trans_reg PF01037.16 gi|327310860|ref|YP_004337757.1| - 2.2e-17 62.4 0.1 2.5e-17 62.3 0.1 1.0 1 0 0 1 1 1 1 AsnC family ACT_4 PF13291.1 gi|327310860|ref|YP_004337757.1| - 0.042 14.1 0.0 3.3 8.1 0.0 2.1 2 0 0 2 2 2 0 ACT domain HMA PF00403.21 gi|327310860|ref|YP_004337757.1| - 0.042 13.9 0.0 0.16 12.1 0.0 1.8 1 1 1 2 2 2 0 Heavy-metal-associated domain GYD PF08734.6 gi|327310860|ref|YP_004337757.1| - 0.045 13.4 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 GYD domain GATase_6 PF13522.1 gi|327310861|ref|YP_004337758.1| - 8.6e-12 45.1 0.0 1.2e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|327310861|ref|YP_004337758.1| - 0.0016 17.2 0.0 0.012 14.2 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferases class-II PRA1 PF03208.14 gi|327310863|ref|YP_004337760.1| - 1.8 7.8 7.8 4.1 6.7 5.4 1.9 1 1 0 1 1 1 0 PRA1 family protein MR_MLE_C PF13378.1 gi|327310864|ref|YP_004337761.1| - 5.6e-24 84.2 0.1 1.1e-23 83.2 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|327310864|ref|YP_004337761.1| - 4.4e-19 68.7 0.3 1.5e-18 67.0 0.2 2.0 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|327310864|ref|YP_004337761.1| - 8.4e-12 45.1 0.0 1.5e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PP_kinase_C PF13090.1 gi|327310864|ref|YP_004337761.1| - 0.081 11.5 0.1 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain NAD_binding_2 PF03446.10 gi|327310865|ref|YP_004337762.1| - 4e-22 78.8 0.1 3.7e-21 75.6 0.0 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|327310865|ref|YP_004337762.1| - 1.6e-15 57.2 2.9 2.9e-15 56.4 2.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.13 gi|327310865|ref|YP_004337762.1| - 1.9e-08 34.2 0.9 6.1e-08 32.5 0.4 2.2 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|327310865|ref|YP_004337762.1| - 3.7e-07 30.4 0.1 2.3e-06 27.9 0.0 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|327310865|ref|YP_004337762.1| - 3.4e-06 26.3 0.0 6.3e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|327310865|ref|YP_004337762.1| - 4.1e-06 26.7 1.1 0.0004 20.3 0.1 2.9 2 1 1 3 3 3 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|327310865|ref|YP_004337762.1| - 0.0001 21.7 0.1 0.00019 20.9 0.1 1.5 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|327310865|ref|YP_004337762.1| - 0.00019 21.2 0.6 0.0073 16.0 0.1 2.7 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF2520 PF10728.4 gi|327310865|ref|YP_004337762.1| - 0.002 17.5 0.4 0.55 9.6 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF2520) DapB_N PF01113.15 gi|327310865|ref|YP_004337762.1| - 0.0022 17.9 0.0 0.0055 16.6 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus CoA_binding_2 PF13380.1 gi|327310865|ref|YP_004337762.1| - 0.0045 17.1 0.3 1.9 8.6 0.0 2.5 3 0 0 3 3 2 1 CoA binding domain ApbA PF02558.11 gi|327310865|ref|YP_004337762.1| - 0.024 14.0 0.2 0.058 12.8 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA OKR_DC_1_N PF03709.10 gi|327310865|ref|YP_004337762.1| - 0.029 14.4 0.1 0.6 10.1 0.0 2.7 2 1 1 3 3 3 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF1869 PF08956.5 gi|327310865|ref|YP_004337762.1| - 0.039 13.5 0.5 2.8 7.6 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1869) DAO PF01266.19 gi|327310865|ref|YP_004337762.1| - 0.042 12.7 6.3 0.3 9.9 4.3 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase Rho_N PF07498.7 gi|327310865|ref|YP_004337762.1| - 0.085 12.6 0.6 0.32 10.8 0.3 2.1 1 1 0 1 1 1 0 Rho termination factor, N-terminal domain Rossmann-like PF10727.4 gi|327310865|ref|YP_004337762.1| - 0.088 12.5 0.2 0.2 11.4 0.2 1.7 1 1 0 1 1 1 0 Rossmann-like domain NAD_binding_10 PF13460.1 gi|327310865|ref|YP_004337762.1| - 0.11 12.5 1.3 1.9 8.4 0.1 2.4 1 1 0 2 2 2 0 NADH(P)-binding Gp_dh_N PF00044.19 gi|327310865|ref|YP_004337762.1| - 0.14 12.1 0.0 0.72 9.8 0.0 2.0 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|327310865|ref|YP_004337762.1| - 0.14 12.7 0.2 1.4 9.5 0.2 2.5 1 1 0 1 1 1 0 Methyltransferase domain ThiF PF00899.16 gi|327310865|ref|YP_004337762.1| - 0.17 11.7 1.0 0.54 10.0 0.2 2.1 3 0 0 3 3 2 0 ThiF family Methyltransf_11 PF08241.7 gi|327310867|ref|YP_004337764.1| - 1e-18 67.5 0.0 1.5e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|327310867|ref|YP_004337764.1| - 1.1e-12 47.9 0.0 1.4e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|327310867|ref|YP_004337764.1| - 5e-12 46.0 0.0 7.7e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|327310867|ref|YP_004337764.1| - 1.8e-11 44.0 0.2 2.6e-11 43.5 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327310867|ref|YP_004337764.1| - 1.5e-10 40.8 0.0 1.8e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327310867|ref|YP_004337764.1| - 2.7e-09 37.3 0.0 4e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|327310867|ref|YP_004337764.1| - 1.1e-08 34.4 0.0 1.5e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|327310867|ref|YP_004337764.1| - 1.4e-07 32.0 0.0 1.9e-07 31.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|327310867|ref|YP_004337764.1| - 0.00045 19.6 0.0 0.00072 18.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|327310867|ref|YP_004337764.1| - 0.0017 17.7 0.0 0.0022 17.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|327310867|ref|YP_004337764.1| - 0.019 14.1 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|327310867|ref|YP_004337764.1| - 0.042 12.9 0.0 0.057 12.4 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.10 gi|327310867|ref|YP_004337764.1| - 0.075 12.4 0.0 0.088 12.1 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 GTP_cyclohydro2 PF00925.15 gi|327310867|ref|YP_004337764.1| - 0.14 11.4 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase II PBP_like PF12727.2 gi|327310869|ref|YP_004337766.1| - 9.4e-58 194.3 0.4 4.8e-57 192.0 0.1 2.2 3 0 0 3 3 3 1 PBP superfamily domain MoeA_N PF03453.12 gi|327310869|ref|YP_004337766.1| - 2.2e-54 183.1 0.0 4.8e-54 182.0 0.0 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|327310869|ref|YP_004337766.1| - 2.3e-28 98.3 0.0 4.5e-28 97.4 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|327310869|ref|YP_004337766.1| - 4.5e-19 68.1 0.1 1.3e-18 66.6 0.1 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|327310869|ref|YP_004337766.1| - 0.00012 21.7 0.0 0.00024 20.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|327310869|ref|YP_004337766.1| - 0.011 15.1 0.3 0.058 12.7 0.1 2.1 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|327310869|ref|YP_004337766.1| - 0.07 12.3 0.0 0.22 10.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 T2SE PF00437.15 gi|327310869|ref|YP_004337766.1| - 0.12 11.2 0.0 0.22 10.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|327310870|ref|YP_004337767.1| - 5e-30 104.9 0.0 7.1e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|327310870|ref|YP_004337767.1| - 1.7e-07 31.4 0.6 3.8e-07 30.2 0.4 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|327310870|ref|YP_004337767.1| - 3.1e-07 30.3 0.0 0.00058 19.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|327310870|ref|YP_004337767.1| - 7.2e-06 26.1 0.0 1.7e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sulf_transp PF04143.9 gi|327310871|ref|YP_004337768.1| - 3.9e-11 42.7 35.3 8.3e-07 28.9 6.1 4.3 5 0 0 5 5 5 2 Sulphur transport Pox_I5 PF04713.7 gi|327310871|ref|YP_004337768.1| - 0.13 12.0 3.7 0.8 9.4 0.4 3.0 2 0 0 2 2 2 0 Poxvirus protein I5 Glycos_transf_1 PF00534.15 gi|327310873|ref|YP_004337770.1| - 1.1e-25 90.0 0.0 1.7e-25 89.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|327310873|ref|YP_004337770.1| - 2.6e-07 30.8 0.0 6.6e-07 29.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|327310873|ref|YP_004337770.1| - 7e-07 29.4 0.0 1.2e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 HEPN PF05168.9 gi|327310874|ref|YP_004337771.1| - 1.1e-26 92.9 0.1 1.3e-26 92.7 0.1 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|327310874|ref|YP_004337771.1| - 0.035 13.9 2.5 0.055 13.3 1.8 1.6 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family NTP_transf_2 PF01909.18 gi|327310875|ref|YP_004337772.1| - 2.2e-08 34.3 0.0 2.6e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|327310875|ref|YP_004337772.1| - 0.033 13.8 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MFS_1 PF07690.11 gi|327310876|ref|YP_004337773.1| - 1e-56 192.2 83.7 1e-48 165.8 33.6 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|327310876|ref|YP_004337773.1| - 6.2e-13 48.1 27.5 8.1e-13 47.7 6.1 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|327310876|ref|YP_004337773.1| - 0.00011 20.5 7.2 0.00011 20.5 5.0 2.8 2 1 1 3 3 3 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|327310876|ref|YP_004337773.1| - 0.00053 18.5 36.7 0.0091 14.4 1.6 3.4 3 1 0 3 3 3 2 MFS/sugar transport protein DUF996 PF06195.8 gi|327310877|ref|YP_004337774.1| - 4.2e-26 91.5 19.4 4.2e-26 91.5 13.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF996) MTTB PF06253.6 gi|327310877|ref|YP_004337774.1| - 0.15 9.7 0.5 0.2 9.4 0.3 1.1 1 0 0 1 1 1 0 Trimethylamine methyltransferase (MTTB) DUF1418 PF07214.7 gi|327310877|ref|YP_004337774.1| - 2.9 7.5 6.6 2.3 7.9 1.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1418) Tetraspannin PF00335.15 gi|327310877|ref|YP_004337774.1| - 9.2 5.4 27.9 4.7 6.4 3.4 2.3 1 1 1 2 2 2 0 Tetraspanin family DUF1218 PF06749.7 gi|327310877|ref|YP_004337774.1| - 9.9 6.6 17.3 3 8.3 1.2 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF1218) Chlorosome_CsmC PF11098.3 gi|327310878|ref|YP_004337775.1| - 4.2 7.0 7.7 4.5 6.9 5.3 1.1 1 0 0 1 1 1 0 Chlorosome envelope protein C SBP_bac_1 PF01547.20 gi|327310879|ref|YP_004337776.1| - 8.3e-27 94.7 6.5 1.3e-26 94.0 4.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|327310879|ref|YP_004337776.1| - 2.7e-17 63.4 2.4 2.7e-17 63.4 1.7 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|327310879|ref|YP_004337776.1| - 1.3e-05 24.9 0.0 0.0036 16.9 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|327310880|ref|YP_004337777.1| - 1.6e-15 57.1 26.9 1.6e-15 57.1 18.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|327310881|ref|YP_004337778.1| - 9.7e-19 67.5 18.6 9.7e-19 67.5 12.9 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|327310883|ref|YP_004337780.1| - 1.8e-19 70.4 0.0 2.8e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310883|ref|YP_004337780.1| - 2.8e-14 53.7 0.0 8.4e-07 29.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|327310883|ref|YP_004337780.1| - 1.1e-05 24.7 0.1 0.13 11.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|327310883|ref|YP_004337780.1| - 0.00053 19.4 0.3 0.0011 18.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|327310883|ref|YP_004337780.1| - 0.00061 18.9 0.0 0.083 11.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|327310883|ref|YP_004337780.1| - 0.0008 19.4 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|327310883|ref|YP_004337780.1| - 0.00083 19.7 0.3 0.0013 19.1 0.2 1.1 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|327310883|ref|YP_004337780.1| - 0.0015 17.1 0.0 0.0077 14.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|327310883|ref|YP_004337780.1| - 0.0058 16.5 0.3 0.018 14.9 0.2 1.8 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|327310883|ref|YP_004337780.1| - 0.014 15.0 0.1 0.026 14.2 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|327310883|ref|YP_004337780.1| - 0.025 14.3 1.0 0.042 13.6 0.1 1.8 2 0 0 2 2 1 0 Part of AAA domain AAA_28 PF13521.1 gi|327310883|ref|YP_004337780.1| - 0.028 14.4 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|327310883|ref|YP_004337780.1| - 0.034 14.4 0.0 0.45 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain DLIC PF05783.6 gi|327310883|ref|YP_004337780.1| - 0.054 12.1 0.0 0.077 11.6 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) DUF3584 PF12128.3 gi|327310883|ref|YP_004337780.1| - 0.058 10.7 0.5 0.076 10.3 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MobB PF03205.9 gi|327310883|ref|YP_004337780.1| - 0.068 12.8 0.2 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|327310883|ref|YP_004337780.1| - 0.11 11.9 0.1 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|327310883|ref|YP_004337780.1| - 0.12 11.4 0.6 8.6 5.3 0.1 2.2 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.1 gi|327310883|ref|YP_004337780.1| - 0.12 11.8 0.3 0.39 10.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|327310883|ref|YP_004337780.1| - 0.13 11.7 0.1 0.27 10.6 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|327310883|ref|YP_004337780.1| - 0.14 12.6 0.0 0.22 12.0 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|327310883|ref|YP_004337780.1| - 0.19 11.1 0.2 0.32 10.4 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|327310883|ref|YP_004337780.1| - 0.24 12.2 3.4 0.71 10.6 2.3 2.2 1 1 0 1 1 1 0 AAA domain Complex1_49kDa PF00346.14 gi|327310885|ref|YP_004337782.1| - 4.4e-40 137.3 0.0 6.6e-40 136.8 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Oxidored_q6 PF01058.17 gi|327310885|ref|YP_004337782.1| - 3.3e-23 81.7 0.3 5.4e-23 81.0 0.2 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|327310886|ref|YP_004337783.1| - 0.016 14.9 0.0 0.028 14.2 0.0 1.5 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF4199 PF13858.1 gi|327310886|ref|YP_004337783.1| - 0.11 12.3 3.0 0.14 12.0 2.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) UPF0104 PF03706.8 gi|327310886|ref|YP_004337783.1| - 0.14 11.4 4.6 0.16 11.1 3.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) NADHdh PF00146.16 gi|327310887|ref|YP_004337784.1| - 2.4e-53 181.2 14.6 2.8e-53 180.9 10.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|327310888|ref|YP_004337785.1| - 2.1e-16 58.7 14.2 7.5e-09 34.8 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|327310888|ref|YP_004337785.1| - 1.7e-13 50.1 8.2 2.4e-13 49.6 5.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327310888|ref|YP_004337785.1| - 2.6e-13 49.2 12.9 1.7e-07 30.8 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|327310888|ref|YP_004337785.1| - 2.1e-12 46.1 13.5 2.8e-06 26.9 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|327310888|ref|YP_004337785.1| - 7.3e-12 45.4 8.7 1.3e-11 44.6 6.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|327310888|ref|YP_004337785.1| - 1.1e-11 44.7 20.4 4e-09 36.6 7.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|327310888|ref|YP_004337785.1| - 8.3e-11 41.7 1.0 0.00016 21.6 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327310888|ref|YP_004337785.1| - 3.8e-09 37.1 5.5 0.00019 22.0 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|327310888|ref|YP_004337785.1| - 3.9e-09 36.0 12.7 0.00025 21.1 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|327310888|ref|YP_004337785.1| - 4.6e-09 36.5 1.7 0.0016 18.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|327310888|ref|YP_004337785.1| - 2.7e-08 34.2 4.5 0.00043 20.7 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|327310888|ref|YP_004337785.1| - 2.1e-07 30.6 8.6 0.00096 18.9 1.9 1.8 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327310888|ref|YP_004337785.1| - 4.2e-07 30.2 6.4 0.0037 17.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327310888|ref|YP_004337785.1| - 4.1e-06 26.9 18.0 0.00088 19.6 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|327310888|ref|YP_004337785.1| - 1.1e-05 25.6 11.7 0.0014 19.0 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|327310888|ref|YP_004337785.1| - 0.052 13.4 1.9 0.89 9.4 1.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|327310888|ref|YP_004337785.1| - 0.64 9.6 3.8 5.6 6.6 0.1 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TPP_enzyme_C PF02775.16 gi|327310889|ref|YP_004337786.1| - 3.2e-28 98.2 0.2 4.3e-28 97.8 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|327310889|ref|YP_004337786.1| - 0.00078 18.4 0.1 0.043 12.7 0.0 2.2 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase VWA_2 PF13519.1 gi|327310889|ref|YP_004337786.1| - 0.016 15.3 0.0 0.023 14.8 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain POR_N PF01855.14 gi|327310890|ref|YP_004337787.1| - 1e-64 218.2 1.1 1.3e-64 217.8 0.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|327310890|ref|YP_004337787.1| - 8.9e-13 48.2 0.2 2.8e-12 46.6 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain HEM4 PF02602.10 gi|327310890|ref|YP_004337787.1| - 0.0056 15.9 0.2 0.013 14.8 0.0 1.6 2 0 0 2 2 2 1 Uroporphyrinogen-III synthase HemD POR PF01558.13 gi|327310891|ref|YP_004337788.1| - 1.6e-28 99.7 0.2 2e-28 99.4 0.2 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|327310891|ref|YP_004337788.1| - 1.1e-14 53.3 14.9 1.5e-08 33.8 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|327310891|ref|YP_004337788.1| - 1.5e-11 43.9 5.4 2.4e-11 43.3 3.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327310891|ref|YP_004337788.1| - 3.8e-10 39.9 7.2 6.8e-10 39.1 5.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327310891|ref|YP_004337788.1| - 1.4e-09 37.4 15.1 1.5e-06 27.7 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|327310891|ref|YP_004337788.1| - 8.3e-09 36.0 20.4 7.3e-06 26.6 6.8 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|327310891|ref|YP_004337788.1| - 1.4e-08 34.3 20.6 6.8e-07 28.9 7.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327310891|ref|YP_004337788.1| - 7.4e-08 31.8 13.4 0.00086 19.0 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|327310891|ref|YP_004337788.1| - 2.5e-07 30.8 8.7 5.4e-07 29.7 6.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|327310891|ref|YP_004337788.1| - 7.2e-06 25.9 6.4 1.2e-05 25.2 4.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|327310891|ref|YP_004337788.1| - 0.00034 20.8 4.8 0.19 12.1 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|327310891|ref|YP_004337788.1| - 0.00062 20.2 8.4 0.15 12.6 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|327310891|ref|YP_004337788.1| - 0.00072 19.6 13.9 0.13 12.6 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|327310891|ref|YP_004337788.1| - 0.00094 19.5 11.8 0.0058 17.0 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327310891|ref|YP_004337788.1| - 0.007 16.8 17.6 0.012 16.0 5.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|327310891|ref|YP_004337788.1| - 0.032 14.6 11.2 0.44 10.9 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF2073 PF09846.4 gi|327310891|ref|YP_004337788.1| - 0.081 12.5 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) Oxidored_q1 PF00361.15 gi|327310892|ref|YP_004337789.1| - 5.5e-12 45.5 3.9 2.6e-09 36.7 0.5 2.4 1 1 1 2 2 2 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|327310893|ref|YP_004337790.1| - 2.6e-30 105.6 3.4 2.6e-30 105.6 2.3 2.3 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|327310894|ref|YP_004337791.1| - 6.1e-34 117.5 14.6 1.4e-33 116.3 10.1 1.6 1 1 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q2 PF00420.19 gi|327310895|ref|YP_004337792.1| - 0.0031 17.0 1.0 0.0038 16.7 0.7 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YtpI PF14007.1 gi|327310895|ref|YP_004337792.1| - 0.016 15.1 0.4 0.026 14.4 0.3 1.4 1 0 0 1 1 1 0 YtpI-like protein BCLP PF12304.3 gi|327310895|ref|YP_004337792.1| - 0.048 13.0 2.4 0.059 12.7 1.6 1.2 1 0 0 1 1 1 0 Beta-casein like protein SKG6 PF08693.5 gi|327310895|ref|YP_004337792.1| - 0.3 10.4 11.6 0.32 10.3 0.3 2.9 2 1 1 3 3 3 0 Transmembrane alpha-helix domain BphX PF06139.7 gi|327310895|ref|YP_004337792.1| - 0.37 10.3 2.2 0.41 10.2 1.6 1.2 1 0 0 1 1 1 0 BphX-like Oxidored_q3 PF00499.15 gi|327310896|ref|YP_004337793.1| - 0.0067 16.2 3.2 0.0097 15.6 2.2 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RepB-RCR_reg PF10723.4 gi|327310897|ref|YP_004337794.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Replication regulatory protein RepB HMGL-like PF00682.14 gi|327310898|ref|YP_004337795.1| - 1.6e-46 158.8 0.0 2.7e-46 158.1 0.0 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|327310898|ref|YP_004337795.1| - 6e-28 97.2 0.0 1.1e-27 96.4 0.0 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain PEP_mutase PF13714.1 gi|327310898|ref|YP_004337795.1| - 0.031 13.5 0.1 0.085 12.0 0.0 1.7 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase DUF4530 PF15039.1 gi|327310899|ref|YP_004337796.1| - 0.1 12.5 1.2 0.17 11.7 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4530) DUF3782 PF12644.2 gi|327310900|ref|YP_004337797.1| - 2.1e-07 30.6 17.1 0.014 15.1 9.5 3.8 1 1 1 2 2 2 2 Protein of unknown function (DUF3782) Drf_GBD PF06371.8 gi|327310900|ref|YP_004337797.1| - 0.029 13.7 0.1 0.058 12.7 0.0 1.5 2 0 0 2 2 2 0 Diaphanous GTPase-binding Domain DUF770 PF05591.7 gi|327310900|ref|YP_004337797.1| - 0.44 10.0 6.1 1.3 8.5 1.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF770) Caudo_TAP PF02413.12 gi|327310900|ref|YP_004337797.1| - 0.78 9.9 3.7 0.71 10.0 1.0 2.0 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein CorA PF01544.13 gi|327310900|ref|YP_004337797.1| - 7.8 5.4 7.3 13 4.7 5.0 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Oxidored_molyb PF00174.14 gi|327310901|ref|YP_004337798.1| - 2.1e-37 128.1 0.0 2.6e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain UbiA PF01040.13 gi|327310902|ref|YP_004337799.1| - 2.7e-42 144.7 31.5 3.7e-42 144.3 21.8 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2160 PF09928.4 gi|327310902|ref|YP_004337799.1| - 0.049 13.7 0.2 0.17 11.9 0.1 2.0 1 0 0 1 1 1 0 Predicted small integral membrane protein (DUF2160) TOMM6 PF15184.1 gi|327310902|ref|YP_004337799.1| - 1.4 8.2 9.5 1.9 7.8 0.2 3.4 3 1 1 4 4 4 0 Mitochondrial import receptor subunit TOM6 homolog ADH_zinc_N PF00107.21 gi|327310903|ref|YP_004337800.1| - 2.3e-29 101.5 2.3 4.1e-29 100.7 1.6 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|327310903|ref|YP_004337800.1| - 1.9e-26 91.9 1.0 2.9e-26 91.3 0.1 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|327310903|ref|YP_004337800.1| - 2e-19 70.7 3.0 2.6e-19 70.3 1.4 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|327310903|ref|YP_004337800.1| - 0.0038 17.2 2.6 0.0079 16.2 1.7 1.6 1 1 0 1 1 1 1 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|327310903|ref|YP_004337800.1| - 0.017 14.7 1.2 0.028 14.0 0.8 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|327310903|ref|YP_004337800.1| - 0.057 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Nitro_FeMo-Co PF02579.12 gi|327310903|ref|YP_004337800.1| - 0.076 13.0 1.4 1.1 9.3 0.1 2.4 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor NmrA PF05368.8 gi|327310903|ref|YP_004337800.1| - 0.11 11.7 0.9 0.41 9.8 0.8 1.7 2 0 0 2 2 2 0 NmrA-like family Abi PF02517.11 gi|327310904|ref|YP_004337801.1| - 7.6e-13 48.4 1.9 7.6e-13 48.4 1.3 2.3 1 1 1 2 2 2 1 CAAX protease self-immunity Arch_ATPase PF01637.13 gi|327310905|ref|YP_004337802.1| - 7.5e-28 97.8 0.0 1e-27 97.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|327310905|ref|YP_004337802.1| - 2.4e-08 33.9 0.0 0.00074 19.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|327310905|ref|YP_004337802.1| - 4.2e-07 30.1 1.7 9e-07 29.0 1.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|327310905|ref|YP_004337802.1| - 3.4e-06 27.2 0.0 7.1e-06 26.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|327310905|ref|YP_004337802.1| - 0.0016 17.8 0.2 0.0065 15.8 0.2 1.9 1 1 0 1 1 1 1 AAA domain Zot PF05707.7 gi|327310905|ref|YP_004337802.1| - 0.069 12.6 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Pyr_redox_2 PF07992.9 gi|327310906|ref|YP_004337803.1| - 5.5e-33 114.5 11.5 9.2e-33 113.8 7.3 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|327310906|ref|YP_004337803.1| - 3.2e-18 65.7 0.0 1.1e-17 64.0 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.17 gi|327310906|ref|YP_004337803.1| - 2.4e-15 56.3 20.5 2.8e-12 46.2 0.7 3.5 3 1 1 4 4 4 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|327310906|ref|YP_004337803.1| - 3.2e-14 53.4 0.1 1.4e-11 44.8 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|327310906|ref|YP_004337803.1| - 5.5e-12 45.9 11.2 1.3e-09 38.3 1.8 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|327310906|ref|YP_004337803.1| - 1.4e-10 40.8 1.6 1.4e-10 40.8 1.1 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|327310906|ref|YP_004337803.1| - 1.9e-05 23.7 14.6 0.0002 20.3 5.2 3.8 2 1 2 4 4 4 2 FAD binding domain DAO PF01266.19 gi|327310906|ref|YP_004337803.1| - 3.6e-05 22.8 27.4 0.00015 20.8 1.8 4.0 3 1 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|327310906|ref|YP_004337803.1| - 0.00036 19.1 2.4 0.00036 19.1 1.7 3.2 5 0 0 5 5 5 1 HI0933-like protein K_oxygenase PF13434.1 gi|327310906|ref|YP_004337803.1| - 0.0016 17.3 0.0 0.0053 15.7 0.0 1.6 1 1 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|327310906|ref|YP_004337803.1| - 0.0029 16.7 2.8 0.031 13.3 0.4 2.4 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|327310906|ref|YP_004337803.1| - 0.0043 16.6 6.0 0.17 11.4 0.7 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|327310906|ref|YP_004337803.1| - 0.036 14.3 3.7 3.3 7.9 0.3 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding CPSase_L_chain PF00289.17 gi|327310906|ref|YP_004337803.1| - 0.054 13.6 0.1 13 5.9 0.0 2.8 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain VWA_2 PF13519.1 gi|327310906|ref|YP_004337803.1| - 0.055 13.5 0.0 0.12 12.4 0.0 1.5 2 0 0 2 2 1 0 von Willebrand factor type A domain XdhC_C PF13478.1 gi|327310906|ref|YP_004337803.1| - 0.063 13.5 0.7 2.4 8.4 0.1 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|327310906|ref|YP_004337803.1| - 0.08 12.0 1.2 4.2 6.4 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|327310906|ref|YP_004337803.1| - 0.15 10.9 17.3 0.29 10.0 1.6 3.4 3 1 1 4 4 4 0 Lycopene cyclase protein Shikimate_DH PF01488.15 gi|327310906|ref|YP_004337803.1| - 0.23 11.5 0.8 6.2 6.9 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|327310906|ref|YP_004337803.1| - 0.5 9.3 7.9 3 6.7 0.8 2.2 2 0 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.13 gi|327310906|ref|YP_004337803.1| - 7.4 6.1 9.9 5.9 6.5 0.5 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E1-E2_ATPase PF00122.15 gi|327310907|ref|YP_004337804.1| - 2.2e-59 200.2 0.1 4.2e-59 199.3 0.0 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|327310907|ref|YP_004337804.1| - 2.8e-53 181.5 4.9 7.8e-53 180.0 3.4 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|327310907|ref|YP_004337804.1| - 6.8e-17 62.2 0.0 1.5e-16 61.1 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|327310907|ref|YP_004337804.1| - 4.2e-11 42.8 0.0 3.7e-10 39.8 0.0 2.4 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|327310907|ref|YP_004337804.1| - 1.2e-07 31.5 0.1 0.00041 19.9 0.1 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|327310907|ref|YP_004337804.1| - 0.00081 19.6 0.2 0.033 14.4 0.0 3.3 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|327310907|ref|YP_004337804.1| - 0.033 14.0 0.0 0.2 11.5 0.0 2.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DrsE PF02635.10 gi|327310908|ref|YP_004337805.1| - 1.3e-23 83.3 0.1 1.4e-23 83.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DUF2160 PF09928.4 gi|327310909|ref|YP_004337806.1| - 0.63 10.1 3.9 5.1 7.2 0.5 2.7 1 1 0 2 2 2 0 Predicted small integral membrane protein (DUF2160) DUF2269 PF10027.4 gi|327310909|ref|YP_004337806.1| - 0.88 9.3 13.8 10 5.8 9.6 2.4 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) phiKZ_IP PF12699.2 gi|327310910|ref|YP_004337807.1| - 0.0022 16.9 0.5 0.0025 16.7 0.4 1.0 1 0 0 1 1 1 1 phiKZ-like phage internal head proteins Fmp27_WPPW PF10359.4 gi|327310910|ref|YP_004337807.1| - 0.0055 15.1 0.3 0.0059 15.0 0.2 1.0 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain PhoU_div PF01865.11 gi|327310910|ref|YP_004337807.1| - 0.0093 15.1 0.2 0.011 14.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 Syntaxin-6_N PF09177.6 gi|327310910|ref|YP_004337807.1| - 0.015 15.6 0.4 0.021 15.2 0.3 1.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal TerB PF05099.8 gi|327310910|ref|YP_004337807.1| - 0.027 14.1 1.5 0.032 13.9 1.0 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TerB ADIP PF11559.3 gi|327310910|ref|YP_004337807.1| - 0.038 13.8 0.2 0.044 13.6 0.1 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding FH2 PF02181.18 gi|327310910|ref|YP_004337807.1| - 0.047 12.5 0.2 0.048 12.5 0.1 1.0 1 0 0 1 1 1 0 Formin Homology 2 Domain DUF4355 PF14265.1 gi|327310910|ref|YP_004337807.1| - 0.051 13.5 2.3 0.053 13.4 1.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) Prefoldin_2 PF01920.15 gi|327310910|ref|YP_004337807.1| - 0.052 13.3 1.3 1 9.1 0.0 2.0 1 1 1 2 2 2 0 Prefoldin subunit Nup54 PF13874.1 gi|327310910|ref|YP_004337807.1| - 0.078 12.6 0.2 0.19 11.3 0.1 1.6 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 CENP-F_leu_zip PF10473.4 gi|327310910|ref|YP_004337807.1| - 0.1 12.4 3.3 0.48 10.2 2.3 1.9 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 KLRAQ PF10205.4 gi|327310910|ref|YP_004337807.1| - 0.11 12.5 0.5 0.13 12.2 0.3 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein DUF3086 PF11285.3 gi|327310910|ref|YP_004337807.1| - 0.12 11.2 0.1 0.12 11.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) FliD_C PF07195.7 gi|327310910|ref|YP_004337807.1| - 0.12 11.6 0.0 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF2937 PF11157.3 gi|327310910|ref|YP_004337807.1| - 0.22 10.8 1.0 0.27 10.5 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) DivIC PF04977.10 gi|327310910|ref|YP_004337807.1| - 0.23 10.9 2.0 0.32 10.5 0.1 1.8 1 1 1 2 2 2 0 Septum formation initiator PSK_trans_fac PF07704.6 gi|327310910|ref|YP_004337807.1| - 3.6 8.3 7.8 8.4 7.1 5.4 1.7 1 1 0 1 1 1 0 Rv0623-like transcription factor adh_short PF00106.20 gi|327310911|ref|YP_004337808.1| - 5.9e-18 65.3 6.5 7.4e-18 65.0 4.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|327310911|ref|YP_004337808.1| - 7.2e-18 65.2 0.0 2.5e-17 63.4 0.0 1.7 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|327310911|ref|YP_004337808.1| - 5.6e-05 22.8 2.2 0.00023 20.8 1.5 1.8 1 1 0 1 1 1 1 KR domain Methyltransf_18 PF12847.2 gi|327310911|ref|YP_004337808.1| - 0.00017 22.1 0.0 0.00039 20.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.21 gi|327310911|ref|YP_004337808.1| - 0.0036 16.8 0.8 0.049 13.1 0.1 2.6 2 1 0 2 2 2 1 Zinc-binding dehydrogenase TIR_2 PF13676.1 gi|327310911|ref|YP_004337808.1| - 0.089 12.9 0.0 0.65 10.1 0.0 2.4 3 0 0 3 3 3 0 TIR domain Lyase_1 PF00206.15 gi|327310912|ref|YP_004337809.1| - 1.9e-84 283.5 0.0 3.1e-84 282.8 0.0 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|327310912|ref|YP_004337809.1| - 0.008 16.2 0.1 0.032 14.3 0.1 2.1 1 0 0 1 1 1 1 Fumarase C C-terminus DUF336 PF03928.9 gi|327310913|ref|YP_004337810.1| - 2.1e-12 46.9 0.0 2.2e-12 46.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF336) TruB_C PF09142.6 gi|327310913|ref|YP_004337810.1| - 0.011 15.4 0.1 0.016 14.8 0.0 1.4 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal ADH_N PF08240.7 gi|327310914|ref|YP_004337811.1| - 4.1e-28 97.3 0.8 6.9e-28 96.5 0.6 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|327310914|ref|YP_004337811.1| - 1.6e-18 66.5 0.6 1.9e-17 63.0 0.1 2.3 1 1 1 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|327310914|ref|YP_004337811.1| - 3.9e-16 60.0 0.6 8.7e-16 58.9 0.2 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|327310914|ref|YP_004337811.1| - 3e-05 24.1 1.6 4.7e-05 23.4 0.2 1.8 1 1 0 2 2 2 1 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|327310914|ref|YP_004337811.1| - 0.00056 20.2 0.7 0.0019 18.4 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|327310914|ref|YP_004337811.1| - 0.0013 18.3 0.2 0.0022 17.5 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.8 gi|327310914|ref|YP_004337811.1| - 0.0048 16.1 0.2 0.0048 16.1 0.2 1.6 2 0 0 2 2 2 1 NmrA-like family DapB_N PF01113.15 gi|327310914|ref|YP_004337811.1| - 0.022 14.6 0.1 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus ELFV_dehydrog PF00208.16 gi|327310914|ref|YP_004337811.1| - 0.031 13.8 0.1 0.048 13.2 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|327310914|ref|YP_004337811.1| - 0.087 11.9 0.1 0.24 10.5 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAA_hydrolase PF01557.13 gi|327310915|ref|YP_004337812.1| - 8.2e-72 241.1 0.0 1.3e-71 240.5 0.0 1.3 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF3140 PF11338.3 gi|327310916|ref|YP_004337813.1| - 0.028 14.5 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3140) Mpp10 PF04006.7 gi|327310916|ref|YP_004337813.1| - 0.08 11.3 1.3 0.1 10.9 0.9 1.1 1 0 0 1 1 1 0 Mpp10 protein COG2 PF06148.6 gi|327310916|ref|YP_004337813.1| - 0.14 12.0 0.0 13 5.6 0.0 2.3 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Arch_ATPase PF01637.13 gi|327310917|ref|YP_004337814.1| - 1e-30 107.1 0.0 1.8e-30 106.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|327310917|ref|YP_004337814.1| - 4.5e-08 33.0 0.0 0.014 15.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|327310917|ref|YP_004337814.1| - 1.2e-07 31.9 1.1 1.2e-07 31.9 0.7 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|327310917|ref|YP_004337814.1| - 1.8e-06 28.1 0.1 1.6e-05 25.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|327310917|ref|YP_004337814.1| - 0.026 13.9 0.1 2.4 7.4 0.0 2.9 2 1 1 3 3 3 0 AAA-like domain DUF2160 PF09928.4 gi|327310918|ref|YP_004337815.1| - 0.43 10.7 2.3 0.56 10.3 0.6 1.8 2 0 0 2 2 2 0 Predicted small integral membrane protein (DUF2160) Flavin_Reduct PF01613.13 gi|327310919|ref|YP_004337816.1| - 2.4e-41 141.1 0.0 2.7e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|327310919|ref|YP_004337816.1| - 0.0039 16.7 0.0 0.0048 16.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Zip PF02535.17 gi|327310920|ref|YP_004337817.1| - 1.3e-05 24.4 14.2 4.6e-05 22.5 4.0 2.4 2 0 0 2 2 2 2 ZIP Zinc transporter AhpC-TSA PF00578.16 gi|327310921|ref|YP_004337818.1| - 1.9e-36 124.4 0.0 2.2e-36 124.2 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|327310921|ref|YP_004337818.1| - 1.2e-20 73.5 0.0 1.3e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin PrmA PF06325.8 gi|327310921|ref|YP_004337818.1| - 0.068 12.2 0.1 0.09 11.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Radical_SAM PF04055.16 gi|327310922|ref|YP_004337819.1| - 1.6e-14 54.4 0.0 4.9e-14 52.8 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily E1_dh PF00676.15 gi|327310923|ref|YP_004337820.1| - 4.2e-75 252.2 0.0 4.8e-75 252.0 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|327310923|ref|YP_004337820.1| - 0.00076 18.4 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|327310923|ref|YP_004337820.1| - 0.011 15.3 2.0 0.077 12.5 1.4 2.1 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|327310923|ref|YP_004337820.1| - 0.046 12.5 0.0 0.063 12.0 0.0 1.2 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.19 gi|327310924|ref|YP_004337821.1| - 7.4e-51 172.1 0.0 1.2e-50 171.4 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|327310924|ref|YP_004337821.1| - 1.3e-33 115.5 4.1 4.3e-33 113.8 2.0 2.3 2 0 0 2 2 2 1 Transketolase, C-terminal domain Herpes_UL51 PF04540.8 gi|327310924|ref|YP_004337821.1| - 0.0097 15.5 0.1 0.017 14.7 0.1 1.3 1 0 0 1 1 1 1 Herpesvirus UL51 protein Alba PF01918.16 gi|327310924|ref|YP_004337821.1| - 0.066 12.8 0.1 0.25 10.9 0.0 2.1 2 0 0 2 2 2 0 Alba 2-oxoacid_dh PF00198.18 gi|327310925|ref|YP_004337822.1| - 1.7e-84 282.7 0.1 2.1e-84 282.4 0.1 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|327310925|ref|YP_004337822.1| - 6e-23 80.2 2.1 6e-23 80.2 1.5 1.8 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|327310925|ref|YP_004337822.1| - 9.9e-17 60.3 3.3 2.6e-08 33.3 0.4 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like E3_binding PF02817.12 gi|327310925|ref|YP_004337822.1| - 1.1e-16 60.1 1.5 1.1e-16 60.1 1.0 2.8 3 0 0 3 3 3 1 e3 binding domain HlyD PF00529.15 gi|327310925|ref|YP_004337822.1| - 1.1e-08 34.8 5.6 7.1e-05 22.2 1.0 2.4 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|327310925|ref|YP_004337822.1| - 4.4e-07 29.3 1.8 0.00024 20.3 0.1 2.4 2 1 1 3 3 3 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|327310925|ref|YP_004337822.1| - 1.5e-05 25.2 4.0 0.016 15.5 0.1 2.9 2 1 1 3 3 3 2 HlyD family secretion protein DUF2118 PF09891.4 gi|327310925|ref|YP_004337822.1| - 0.0006 19.5 0.4 0.016 14.9 0.1 2.4 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2118) NQRA PF05896.6 gi|327310925|ref|YP_004337822.1| - 0.0014 17.8 0.3 0.0025 17.0 0.2 1.3 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) QRPTase_N PF02749.11 gi|327310925|ref|YP_004337822.1| - 0.0021 17.8 0.3 1.5 8.7 0.0 2.8 1 1 1 2 2 2 2 Quinolinate phosphoribosyl transferase, N-terminal domain PYNP_C PF07831.8 gi|327310925|ref|YP_004337822.1| - 0.0044 16.4 1.1 0.38 10.2 0.0 2.7 1 1 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain RnfC_N PF13375.1 gi|327310925|ref|YP_004337822.1| - 0.0079 15.8 0.4 0.022 14.4 0.3 1.7 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.15 gi|327310925|ref|YP_004337822.1| - 0.012 15.2 0.3 0.46 10.0 0.0 2.6 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_H PF01597.14 gi|327310925|ref|YP_004337822.1| - 0.045 13.4 0.5 0.15 11.7 0.2 1.9 1 1 1 2 2 2 0 Glycine cleavage H-protein Pyr_redox_2 PF07992.9 gi|327310926|ref|YP_004337823.1| - 2.8e-41 141.6 3.5 5.5e-23 81.8 0.0 4.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|327310926|ref|YP_004337823.1| - 1.2e-31 109.0 0.0 2.2e-31 108.1 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|327310926|ref|YP_004337823.1| - 2.2e-22 79.2 7.7 1e-18 67.4 0.2 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|327310926|ref|YP_004337823.1| - 3.3e-17 63.2 0.1 1.9e-12 47.7 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|327310926|ref|YP_004337823.1| - 1.1e-11 44.2 9.3 9.4e-07 28.0 1.9 2.8 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|327310926|ref|YP_004337823.1| - 3.2e-11 42.9 10.9 6.1e-09 35.4 0.5 3.2 3 0 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|327310926|ref|YP_004337823.1| - 9.7e-10 37.4 10.2 0.0011 17.5 0.9 3.2 3 0 0 3 3 3 3 HI0933-like protein FAD_binding_2 PF00890.19 gi|327310926|ref|YP_004337823.1| - 7.8e-09 34.8 10.6 2e-06 26.9 0.5 3.3 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|327310926|ref|YP_004337823.1| - 1e-08 34.4 15.3 7.2e-05 21.8 1.6 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|327310926|ref|YP_004337823.1| - 1.9e-08 34.2 3.3 0.00013 21.9 0.3 3.2 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|327310926|ref|YP_004337823.1| - 2.1e-07 30.6 4.3 0.00041 19.9 0.1 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|327310926|ref|YP_004337823.1| - 5.2e-07 29.0 11.9 0.0082 15.2 0.8 3.3 3 0 0 3 3 3 3 FAD binding domain Trp_halogenase PF04820.9 gi|327310926|ref|YP_004337823.1| - 4.5e-06 25.5 9.9 0.00034 19.3 0.1 3.0 3 0 0 3 3 3 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|327310926|ref|YP_004337823.1| - 0.00021 20.3 9.1 0.015 14.2 0.4 3.3 3 0 0 3 3 3 2 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|327310926|ref|YP_004337823.1| - 0.0014 18.2 3.3 0.027 14.1 0.6 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|327310926|ref|YP_004337823.1| - 0.0037 16.3 2.4 1.3 8.0 0.1 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.1 gi|327310926|ref|YP_004337823.1| - 0.011 15.9 1.6 1.4 9.2 0.1 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|327310926|ref|YP_004337823.1| - 0.018 14.8 7.1 6.2 6.5 0.0 3.9 4 0 0 4 4 4 0 FAD-NAD(P)-binding XdhC_C PF13478.1 gi|327310926|ref|YP_004337823.1| - 0.042 14.1 0.4 7.6 6.8 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|327310926|ref|YP_004337823.1| - 0.15 11.1 0.2 13 4.9 0.0 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BPL_LplA_LipB PF03099.14 gi|327310927|ref|YP_004337824.1| - 2.1e-14 53.5 0.3 3.2e-14 52.9 0.2 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Aldolase_II PF00596.16 gi|327310927|ref|YP_004337824.1| - 0.033 13.8 0.0 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 Class II Aldolase and Adducin N-terminal domain TusA PF01206.12 gi|327310928|ref|YP_004337825.1| - 3.2e-05 23.4 0.0 4.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|327310928|ref|YP_004337825.1| - 0.021 14.3 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Rhodanese PF00581.15 gi|327310929|ref|YP_004337826.1| - 4e-44 149.5 0.1 4.5e-22 78.5 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain PaREP1 PF05942.6 gi|327310930|ref|YP_004337827.1| - 1.7e-23 82.7 12.6 2.4e-23 82.1 8.7 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|327310930|ref|YP_004337827.1| - 0.006 16.4 5.1 0.013 15.3 3.6 1.6 1 1 0 1 1 1 1 HEPN domain HisKA_3 PF07730.8 gi|327310930|ref|YP_004337827.1| - 0.06 13.7 1.4 11 6.4 0.2 2.6 2 1 0 2 2 2 0 Histidine kinase DUF1542 PF07564.6 gi|327310930|ref|YP_004337827.1| - 0.1 12.6 0.1 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1542) DAO PF01266.19 gi|327310931|ref|YP_004337828.1| - 2.4e-41 141.8 2.9 2.9e-41 141.5 2.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|327310931|ref|YP_004337828.1| - 3.6e-07 30.2 0.8 0.0026 17.6 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|327310931|ref|YP_004337828.1| - 5.1e-07 29.6 0.5 1.6e-06 28.0 0.3 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|327310931|ref|YP_004337828.1| - 2e-05 24.9 0.3 4.6e-05 23.7 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|327310931|ref|YP_004337828.1| - 0.00012 21.1 1.3 0.00047 19.1 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|327310931|ref|YP_004337828.1| - 0.00048 19.3 0.0 0.00066 18.8 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|327310931|ref|YP_004337828.1| - 0.00074 18.5 0.2 0.092 11.6 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|327310931|ref|YP_004337828.1| - 0.0014 17.1 0.5 0.004 15.6 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|327310931|ref|YP_004337828.1| - 0.0017 17.4 0.4 0.0054 15.8 0.0 1.8 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|327310931|ref|YP_004337828.1| - 0.0022 18.1 0.3 0.055 13.5 0.2 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|327310931|ref|YP_004337828.1| - 0.0038 16.3 0.2 0.0058 15.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|327310931|ref|YP_004337828.1| - 0.004 16.7 0.3 0.0095 15.5 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|327310931|ref|YP_004337828.1| - 0.0041 16.0 1.7 0.021 13.7 0.8 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A ApbA PF02558.11 gi|327310931|ref|YP_004337828.1| - 0.0056 16.1 0.2 0.0092 15.4 0.2 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.19 gi|327310931|ref|YP_004337828.1| - 0.0072 15.4 1.2 0.42 9.6 0.1 2.3 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase PDGLE PF13190.1 gi|327310931|ref|YP_004337828.1| - 0.037 13.7 0.1 0.49 10.1 0.0 2.2 2 0 0 2 2 2 0 PDGLE domain NAD_binding_7 PF13241.1 gi|327310931|ref|YP_004337828.1| - 0.038 14.2 0.1 0.082 13.1 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|327310931|ref|YP_004337828.1| - 0.059 12.0 0.3 0.097 11.2 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase HTH_27 PF13463.1 gi|327310932|ref|YP_004337829.1| - 2.5e-05 24.4 0.1 5e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|327310932|ref|YP_004337829.1| - 5.4e-05 23.2 0.0 8.8e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|327310932|ref|YP_004337829.1| - 5.6e-05 23.1 0.0 0.00014 21.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|327310932|ref|YP_004337829.1| - 0.00018 21.1 0.1 0.00036 20.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|327310932|ref|YP_004337829.1| - 0.00033 20.5 0.2 0.00077 19.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|327310932|ref|YP_004337829.1| - 0.00056 19.5 0.6 0.00098 18.7 0.4 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|327310932|ref|YP_004337829.1| - 0.0014 18.0 0.0 0.0022 17.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|327310932|ref|YP_004337829.1| - 0.0035 16.9 0.0 0.0085 15.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain PaaX PF07848.7 gi|327310932|ref|YP_004337829.1| - 0.0045 16.9 0.8 0.014 15.4 0.5 1.9 1 1 0 1 1 1 1 PaaX-like protein HTH_20 PF12840.2 gi|327310932|ref|YP_004337829.1| - 0.0059 16.3 0.7 0.0093 15.7 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain GntR PF00392.16 gi|327310932|ref|YP_004337829.1| - 0.011 15.2 1.6 0.016 14.6 0.5 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_Mga PF08280.6 gi|327310932|ref|YP_004337829.1| - 0.019 14.7 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain SgrR_N PF12793.2 gi|327310932|ref|YP_004337829.1| - 0.025 14.5 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HxlR PF01638.12 gi|327310932|ref|YP_004337829.1| - 0.051 13.1 0.1 0.087 12.4 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix RPA_C PF08784.6 gi|327310932|ref|YP_004337829.1| - 0.062 13.7 0.0 0.086 13.2 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal Pirin PF02678.11 gi|327310933|ref|YP_004337830.1| - 5.7e-37 125.8 0.0 8.3e-37 125.3 0.0 1.3 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.8 gi|327310933|ref|YP_004337830.1| - 6.1e-26 90.5 0.0 5.2e-25 87.5 0.0 2.0 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.6 gi|327310933|ref|YP_004337830.1| - 0.00037 19.9 0.2 0.00077 18.9 0.1 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|327310933|ref|YP_004337830.1| - 0.07 12.5 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) CytB6-F_Fe-S PF08802.5 gi|327310934|ref|YP_004337831.1| - 0.51 10.3 2.2 1.5 8.9 1.5 1.8 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit YHS PF04945.8 gi|327310935|ref|YP_004337832.1| - 6e-22 77.2 0.9 6.6e-22 77.0 0.6 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|327310935|ref|YP_004337832.1| - 0.00028 20.9 1.3 0.00042 20.4 0.9 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|327310935|ref|YP_004337832.1| - 0.00055 19.5 0.5 0.00072 19.1 0.4 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ribosomal_L24e PF01246.15 gi|327310935|ref|YP_004337832.1| - 0.019 14.7 0.1 0.022 14.6 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L24e DUF2116 PF09889.4 gi|327310935|ref|YP_004337832.1| - 0.044 13.5 0.1 0.044 13.5 0.1 2.1 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) MarR_2 PF12802.2 gi|327310936|ref|YP_004337833.1| - 3.4e-07 29.8 0.1 7.5e-07 28.7 0.1 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|327310936|ref|YP_004337833.1| - 4.8e-07 29.3 0.3 1.8e-06 27.5 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|327310936|ref|YP_004337833.1| - 0.0003 20.0 0.0 0.0006 19.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|327310936|ref|YP_004337833.1| - 0.00044 20.1 0.2 0.0008 19.3 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|327310936|ref|YP_004337833.1| - 0.00066 19.2 0.0 0.0015 18.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|327310936|ref|YP_004337833.1| - 0.0029 17.2 0.1 0.0064 16.1 0.0 1.5 2 0 0 2 2 2 1 HTH domain Phage_terminase PF10668.4 gi|327310936|ref|YP_004337833.1| - 0.0062 16.2 0.0 0.0098 15.6 0.0 1.2 1 0 0 1 1 1 1 Phage terminase small subunit MarR PF01047.17 gi|327310936|ref|YP_004337833.1| - 0.01 15.4 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|327310936|ref|YP_004337833.1| - 0.013 15.6 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|327310936|ref|YP_004337833.1| - 0.013 15.2 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|327310936|ref|YP_004337833.1| - 0.017 14.6 0.9 0.025 14.0 0.1 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.1 gi|327310936|ref|YP_004337833.1| - 0.028 14.0 0.1 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.11 gi|327310936|ref|YP_004337833.1| - 0.03 13.8 0.1 0.048 13.2 0.1 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Fe_dep_repress PF01325.14 gi|327310936|ref|YP_004337833.1| - 0.038 13.9 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|327310936|ref|YP_004337833.1| - 0.041 14.2 0.1 0.067 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.16 gi|327310936|ref|YP_004337833.1| - 0.044 13.2 0.4 0.08 12.3 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF385 PF04075.9 gi|327310936|ref|YP_004337833.1| - 0.1 12.5 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF385) Thioredox_DsbH PF03190.10 gi|327310938|ref|YP_004337835.1| - 1.4e-57 193.9 0.0 2.1e-57 193.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|327310938|ref|YP_004337835.1| - 2.3e-15 56.3 0.4 5.6e-15 55.1 0.1 1.8 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|327310938|ref|YP_004337835.1| - 4e-06 26.9 0.0 7.9e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|327310938|ref|YP_004337835.1| - 0.00018 21.1 0.1 0.00036 20.1 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin HAD_2 PF13419.1 gi|327310938|ref|YP_004337835.1| - 0.011 15.9 0.3 6 7.0 0.0 3.0 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase Asp_protease_2 PF13650.1 gi|327310939|ref|YP_004337836.1| - 3.6e-09 36.9 0.2 6.2e-09 36.2 0.2 1.4 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|327310939|ref|YP_004337836.1| - 4.5e-06 26.3 0.2 1.7e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|327310939|ref|YP_004337836.1| - 0.00068 19.5 0.0 0.00083 19.2 0.0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease HTH_31 PF13560.1 gi|327310939|ref|YP_004337836.1| - 0.0077 16.3 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|327310939|ref|YP_004337836.1| - 0.027 14.3 0.0 0.081 12.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix Asp PF00026.18 gi|327310939|ref|YP_004337836.1| - 0.076 12.2 0.0 0.078 12.2 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic aspartyl protease Asp_protease PF09668.5 gi|327310939|ref|YP_004337836.1| - 0.14 11.7 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Aspartyl protease GPI2 PF06432.6 gi|327310940|ref|YP_004337837.1| - 0.13 11.5 2.3 8.4 5.6 0.0 2.0 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF1772 PF08592.6 gi|327310940|ref|YP_004337837.1| - 9.7 5.9 12.6 1.1 8.9 0.3 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF1772) DUF2686 PF10887.3 gi|327310941|ref|YP_004337838.1| - 0.04 12.6 0.1 0.066 11.9 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2686) Frag1 PF10277.4 gi|327310941|ref|YP_004337838.1| - 0.16 11.4 6.5 0.1 12.0 3.5 1.4 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family Virul_fac_BrkB PF03631.10 gi|327310941|ref|YP_004337838.1| - 0.21 10.8 9.3 0.26 10.6 6.5 1.1 1 0 0 1 1 1 0 Virulence factor BrkB DUF1345 PF07077.6 gi|327310941|ref|YP_004337838.1| - 0.4 10.1 6.8 0.47 9.9 4.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) DUF165 PF02592.10 gi|327310941|ref|YP_004337838.1| - 0.67 10.1 8.8 1.8 8.7 6.1 1.7 1 1 0 1 1 1 0 Uncharacterized ACR, YhhQ family COG1738 EmrE PF13536.1 gi|327310941|ref|YP_004337838.1| - 0.69 10.1 7.0 0.91 9.7 4.9 1.1 1 0 0 1 1 1 0 Multidrug resistance efflux transporter DUF1761 PF08570.5 gi|327310941|ref|YP_004337838.1| - 0.79 9.7 8.5 1.4 8.9 5.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1761) SUR7 PF06687.7 gi|327310941|ref|YP_004337838.1| - 0.82 9.1 7.2 0.91 9.0 4.6 1.4 1 1 0 1 1 1 0 SUR7/PalI family DUF2839 PF10999.3 gi|327310941|ref|YP_004337838.1| - 1.5 8.8 3.4 3.7 7.6 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) SieB PF14163.1 gi|327310941|ref|YP_004337838.1| - 2.5 7.6 4.3 1.4 8.4 1.0 2.0 1 1 1 2 2 2 0 Superinfection exclusion protein B ABC2_membrane_5 PF13346.1 gi|327310941|ref|YP_004337838.1| - 3.4 6.8 7.5 13 5.0 2.7 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein SecE PF00584.15 gi|327310941|ref|YP_004337838.1| - 4.3 6.9 14.6 0.28 10.7 1.0 3.1 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex Abhydrolase_9_N PF15420.1 gi|327310941|ref|YP_004337838.1| - 4.8 6.8 10.0 1.9 8.1 4.4 1.8 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus Pro_CA PF00484.14 gi|327310942|ref|YP_004337839.1| - 7.2e-27 94.2 0.1 1.2e-26 93.5 0.1 1.4 1 0 0 1 1 1 1 Carbonic anhydrase DUF360 PF04020.8 gi|327310943|ref|YP_004337840.1| - 0.00044 20.5 13.8 0.0039 17.5 2.4 2.0 1 1 1 2 2 2 2 Membrane protein of unknown function DUF2422 PF10337.4 gi|327310943|ref|YP_004337840.1| - 0.03 13.1 0.2 0.036 12.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) Herpes_glycop PF01528.11 gi|327310943|ref|YP_004337840.1| - 0.061 12.0 1.6 0.087 11.5 1.1 1.2 1 0 0 1 1 1 0 Herpesvirus glycoprotein M Bac_Ubq_Cox PF01654.12 gi|327310943|ref|YP_004337840.1| - 0.22 9.9 6.1 0.048 12.0 1.6 1.6 1 1 0 1 1 1 0 Bacterial Cytochrome Ubiquinol Oxidase Yip1 PF04893.12 gi|327310943|ref|YP_004337840.1| - 0.6 9.5 23.1 0.78 9.2 16.0 1.2 1 0 0 1 1 1 0 Yip1 domain DUF3353 PF11833.3 gi|327310943|ref|YP_004337840.1| - 7.8 5.9 11.5 0.088 12.2 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3353) Podoplanin PF05808.6 gi|327310943|ref|YP_004337840.1| - 7.9 6.0 6.0 3.7 7.0 1.7 1.9 1 1 1 2 2 2 0 Podoplanin DHHA1 PF02272.14 gi|327310944|ref|YP_004337841.1| - 1.2e-09 37.6 0.6 3.2e-09 36.3 0.0 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|327310944|ref|YP_004337841.1| - 2.9e-08 33.4 0.1 4.4e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 DHH family NTP_transf_2 PF01909.18 gi|327310945|ref|YP_004337842.1| - 3.5e-09 36.8 1.2 8.8e-09 35.5 0.8 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|327310945|ref|YP_004337842.1| - 3.8e-05 23.3 0.0 6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF86 Nuc-transf PF10127.4 gi|327310945|ref|YP_004337842.1| - 0.0082 15.5 0.8 0.016 14.5 0.1 1.8 1 1 1 2 2 2 1 Predicted nucleotidyltransferase DUF2204 PF09970.4 gi|327310946|ref|YP_004337843.1| - 0.00086 18.8 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) DUF1814 PF08843.6 gi|327310946|ref|YP_004337843.1| - 0.011 15.4 1.0 0.021 14.6 0.7 1.4 1 1 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF1814) PaREP1 PF05942.6 gi|327310948|ref|YP_004337845.1| - 2.5e-26 91.8 1.5 3.1e-26 91.4 1.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family RHH_1 PF01402.16 gi|327310948|ref|YP_004337845.1| - 0.015 15.1 0.7 0.9 9.5 0.0 3.3 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family HEPN PF05168.9 gi|327310948|ref|YP_004337845.1| - 0.019 14.8 1.0 0.025 14.4 0.7 1.2 1 0 0 1 1 1 0 HEPN domain MipA PF06629.7 gi|327310949|ref|YP_004337846.1| - 0.081 12.3 0.1 0.091 12.1 0.1 1.0 1 0 0 1 1 1 0 MltA-interacting protein MipA PaREP1 PF05942.6 gi|327310950|ref|YP_004337847.1| - 1e-25 89.8 6.9 1e-25 89.8 4.8 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Pterin_4a PF01329.14 gi|327310951|ref|YP_004337848.1| - 4.4e-16 58.4 0.0 4.8e-16 58.3 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Epimerase_Csub PF13950.1 gi|327310951|ref|YP_004337848.1| - 0.075 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit TPR_4 PF07721.9 gi|327310951|ref|YP_004337848.1| - 0.14 12.6 1.7 0.33 11.5 1.2 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF1691 PF07950.6 gi|327310953|ref|YP_004337850.1| - 0.019 14.8 0.0 0.02 14.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1691) DUF2374 PF09574.5 gi|327310953|ref|YP_004337850.1| - 0.067 12.8 1.0 0.11 12.1 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (Duf2374) Prenyltrans PF00432.16 gi|327310954|ref|YP_004337851.1| - 0.09 12.3 0.2 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 Prenyltransferase and squalene oxidase repeat Oxidored_molyb PF00174.14 gi|327310955|ref|YP_004337852.1| - 3.4e-49 166.5 0.1 4.2e-49 166.2 0.1 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TAT_signal PF10518.4 gi|327310955|ref|YP_004337852.1| - 0.0044 16.9 2.6 0.009 15.9 1.8 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence HTH_5 PF01022.15 gi|327310956|ref|YP_004337853.1| - 3e-11 42.8 0.1 4.3e-11 42.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|327310956|ref|YP_004337853.1| - 1.9e-10 40.4 0.1 2.5e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|327310956|ref|YP_004337853.1| - 1.5e-06 27.7 0.0 2.3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|327310956|ref|YP_004337853.1| - 2.1e-05 23.8 0.1 4.4e-05 22.7 0.0 1.5 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|327310956|ref|YP_004337853.1| - 3.3e-05 23.3 0.0 5.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|327310956|ref|YP_004337853.1| - 6.6e-05 22.5 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.11 gi|327310956|ref|YP_004337853.1| - 0.00023 21.2 0.0 0.0082 16.2 0.0 2.0 1 1 1 2 2 2 1 Penicillinase repressor FeoC PF09012.5 gi|327310956|ref|YP_004337853.1| - 0.00096 18.8 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF2250 PF10007.4 gi|327310956|ref|YP_004337853.1| - 0.0013 18.6 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) GerE PF00196.14 gi|327310956|ref|YP_004337853.1| - 0.0016 17.6 0.0 0.0028 16.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|327310956|ref|YP_004337853.1| - 0.0025 17.3 0.0 0.0035 16.8 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain DUF4423 PF14394.1 gi|327310956|ref|YP_004337853.1| - 0.0029 17.1 0.0 0.004 16.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_45 PF14947.1 gi|327310956|ref|YP_004337853.1| - 0.0045 16.7 0.0 0.0067 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix FaeA PF04703.7 gi|327310956|ref|YP_004337853.1| - 0.0054 16.8 0.0 0.0088 16.1 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_12 PF08461.5 gi|327310956|ref|YP_004337853.1| - 0.0075 15.9 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_29 PF13551.1 gi|327310956|ref|YP_004337853.1| - 0.011 15.8 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.15 gi|327310956|ref|YP_004337853.1| - 0.012 15.7 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator MotA_activ PF09114.5 gi|327310956|ref|YP_004337853.1| - 0.013 15.2 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain HTH_28 PF13518.1 gi|327310956|ref|YP_004337853.1| - 0.017 15.1 0.4 0.041 13.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_9 PF08221.6 gi|327310956|ref|YP_004337853.1| - 0.022 14.5 0.0 0.054 13.3 0.0 1.7 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain RuvB_C PF05491.8 gi|327310956|ref|YP_004337853.1| - 0.029 14.0 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_23 PF13384.1 gi|327310956|ref|YP_004337853.1| - 0.032 13.8 0.0 0.093 12.4 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|327310956|ref|YP_004337853.1| - 0.034 13.9 0.0 0.05 13.4 0.0 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.17 gi|327310956|ref|YP_004337853.1| - 0.04 13.6 0.0 0.068 12.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_40 PF14493.1 gi|327310956|ref|YP_004337853.1| - 0.054 13.7 0.0 0.076 13.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|327310956|ref|YP_004337853.1| - 0.061 12.9 0.0 0.098 12.2 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|327310956|ref|YP_004337853.1| - 0.071 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_rep_org_N PF09681.5 gi|327310956|ref|YP_004337853.1| - 0.072 12.6 0.0 0.088 12.3 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2089 PF09862.4 gi|327310956|ref|YP_004337853.1| - 0.082 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_27 PF13463.1 gi|327310956|ref|YP_004337853.1| - 0.092 13.0 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|327310956|ref|YP_004337853.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.1 gi|327310956|ref|YP_004337853.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2637 PF10935.3 gi|327310957|ref|YP_004337854.1| - 0.0034 17.3 8.7 0.0042 17.0 6.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2637) DUF4350 PF14258.1 gi|327310958|ref|YP_004337855.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) DrsE_2 PF13686.1 gi|327310959|ref|YP_004337856.1| - 5.4e-08 32.7 0.0 6.9e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|327310959|ref|YP_004337856.1| - 0.0022 18.0 0.1 0.021 14.8 0.0 2.0 1 1 0 1 1 1 1 DsrE/DsrF-like family DUF4265 PF14085.1 gi|327310959|ref|YP_004337856.1| - 0.15 11.8 0.0 0.49 10.1 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) TusA PF01206.12 gi|327310960|ref|YP_004337857.1| - 1.3e-25 88.7 0.0 1.4e-25 88.6 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF1930 PF09122.5 gi|327310960|ref|YP_004337857.1| - 0.077 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1930) CbiA PF01656.18 gi|327310961|ref|YP_004337858.1| - 4.7e-10 39.1 0.0 4.8e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|327310961|ref|YP_004337858.1| - 0.054 13.0 0.0 0.31 10.6 0.0 1.8 1 1 1 2 2 2 0 AAA domain TPR_10 PF13374.1 gi|327310961|ref|YP_004337858.1| - 0.72 9.8 0.2 0.72 9.8 0.1 2.5 3 0 0 3 3 3 0 Tetratricopeptide repeat Arif-1 PF06770.6 gi|327310962|ref|YP_004337859.1| - 0.1 11.9 0.1 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) TPPK_C PF12555.3 gi|327310962|ref|YP_004337859.1| - 2.5 7.8 5.8 0.24 11.1 0.3 1.9 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Oxidored_q3 PF00499.15 gi|327310963|ref|YP_004337860.1| - 0.0024 17.6 3.9 0.003 17.3 2.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF998 PF06197.8 gi|327310963|ref|YP_004337860.1| - 0.49 9.6 12.6 0.79 9.0 8.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF998) Cation_efflux PF01545.16 gi|327310963|ref|YP_004337860.1| - 1.9 7.4 7.0 2.4 7.1 4.9 1.1 1 0 0 1 1 1 0 Cation efflux family DUF4231 PF14015.1 gi|327310963|ref|YP_004337860.1| - 3.2 7.7 8.7 19 5.3 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) DUF3995 PF13160.1 gi|327310963|ref|YP_004337860.1| - 5.3 7.1 11.5 1.1 9.3 4.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) Cytochrom_B_N_2 PF13631.1 gi|327310964|ref|YP_004337861.1| - 2.4e-32 112.0 7.4 2.4e-32 112.0 5.1 2.3 4 0 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB PepSY_TM PF03929.11 gi|327310964|ref|YP_004337861.1| - 0.056 13.8 0.0 0.056 13.8 0.0 6.0 8 0 0 8 8 8 0 PepSY-associated TM helix Claudin_3 PF06653.6 gi|327310964|ref|YP_004337861.1| - 0.084 12.5 0.2 0.084 12.5 0.2 2.6 3 1 0 3 3 3 0 Tight junction protein, Claudin-like Rieske PF00355.21 gi|327310965|ref|YP_004337862.1| - 9.7e-08 31.4 1.2 3e-07 29.9 0.9 1.7 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Cytochrom_C PF00034.16 gi|327310966|ref|YP_004337863.1| - 0.016 15.9 0.0 0.032 15.0 0.0 1.7 1 1 0 1 1 1 0 Cytochrome c Glycos_transf_1 PF00534.15 gi|327310966|ref|YP_004337863.1| - 0.14 11.5 0.0 0.78 9.1 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferases group 1 Phosphoprotein PF00922.12 gi|327310966|ref|YP_004337863.1| - 5.1 6.2 6.3 13 4.9 0.1 2.1 2 0 0 2 2 2 0 Vesiculovirus phosphoprotein TrbC PF04956.8 gi|327310967|ref|YP_004337864.1| - 0.87 9.6 4.8 2 8.4 3.3 1.5 1 1 0 1 1 1 0 TrbC/VIRB2 family AA_permease_C PF13906.1 gi|327310967|ref|YP_004337864.1| - 1.6 8.6 9.6 0.95 9.3 1.1 2.3 2 0 0 2 2 2 0 C-terminus of AA_permease Syndecan PF01034.15 gi|327310967|ref|YP_004337864.1| - 2.7 7.7 4.6 0.77 9.4 0.1 2.0 2 0 0 2 2 2 0 Syndecan domain Vma12 PF11712.3 gi|327310967|ref|YP_004337864.1| - 4.4 6.9 5.0 6.7 6.4 3.5 1.2 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase COX2 PF00116.15 gi|327310968|ref|YP_004337865.1| - 1.3e-21 76.6 0.1 4.8e-19 68.3 0.0 2.1 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|327310968|ref|YP_004337865.1| - 1.2e-07 31.5 0.0 1.3e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain Glyco_trans_4_2 PF13477.1 gi|327310968|ref|YP_004337865.1| - 0.073 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Copper-bind PF00127.15 gi|327310968|ref|YP_004337865.1| - 0.14 12.4 0.3 1.5 9.0 0.2 2.1 1 1 0 2 2 2 0 Copper binding proteins, plastocyanin/azurin family COX1 PF00115.15 gi|327310969|ref|YP_004337866.1| - 1e-132 442.9 53.0 1e-132 442.9 36.7 2.3 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|327310969|ref|YP_004337866.1| - 2.5e-17 63.2 13.7 8.4e-17 61.4 9.5 2.0 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III EIIC-GAT PF03611.9 gi|327310970|ref|YP_004337867.1| - 0.061 12.0 0.1 0.061 12.0 0.1 1.0 1 0 0 1 1 1 0 PTS system sugar-specific permease component DUF3902 PF13042.1 gi|327310970|ref|YP_004337867.1| - 0.092 12.0 0.5 0.11 11.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3902) DUF1459 PF07312.6 gi|327310970|ref|YP_004337867.1| - 0.22 11.4 3.4 0.26 11.2 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1459) PTS_EIIC_2 PF13303.1 gi|327310970|ref|YP_004337867.1| - 0.29 9.9 3.2 0.29 9.9 2.2 1.1 1 0 0 1 1 1 0 Phosphotransferase system, EIIC SCO1-SenC PF02630.9 gi|327310971|ref|YP_004337868.1| - 3.7e-17 62.4 0.0 5e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC UbiA PF01040.13 gi|327310972|ref|YP_004337869.1| - 5.9e-27 94.5 30.4 7.9e-27 94.0 21.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2518 PF10726.4 gi|327310972|ref|YP_004337869.1| - 0.068 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of function (DUF2518) SCO1-SenC PF02630.9 gi|327310974|ref|YP_004337871.1| - 9.9e-13 48.0 0.0 1.4e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.16 gi|327310974|ref|YP_004337871.1| - 0.00079 19.1 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|327310974|ref|YP_004337871.1| - 0.0049 16.4 0.0 0.0071 15.8 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|327310974|ref|YP_004337871.1| - 0.15 12.2 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like DUF461 PF04314.8 gi|327310976|ref|YP_004337873.1| - 0.00014 21.4 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF461) HTH_5 PF01022.15 gi|327310980|ref|YP_004337877.1| - 1.6e-07 30.8 0.0 2.8e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|327310980|ref|YP_004337877.1| - 4.1e-07 29.6 0.2 6.3e-07 29.0 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|327310980|ref|YP_004337877.1| - 1.4e-05 24.6 0.0 3.2e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|327310980|ref|YP_004337877.1| - 1.7e-05 24.3 0.0 2.8e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|327310980|ref|YP_004337877.1| - 0.00058 19.1 0.1 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|327310980|ref|YP_004337877.1| - 0.0012 18.4 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|327310980|ref|YP_004337877.1| - 0.0015 18.1 0.1 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|327310980|ref|YP_004337877.1| - 0.002 18.1 0.0 0.0038 17.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|327310980|ref|YP_004337877.1| - 0.0036 17.1 0.0 0.022 14.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|327310980|ref|YP_004337877.1| - 0.0052 16.4 0.2 0.0082 15.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|327310980|ref|YP_004337877.1| - 0.017 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix GntR PF00392.16 gi|327310980|ref|YP_004337877.1| - 0.022 14.1 0.2 0.038 13.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|327310980|ref|YP_004337877.1| - 0.025 14.7 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_DeoR PF08220.7 gi|327310980|ref|YP_004337877.1| - 0.05 13.1 0.0 0.097 12.2 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|327310980|ref|YP_004337877.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4093 PF13331.1 gi|327310980|ref|YP_004337877.1| - 0.11 12.6 0.5 0.17 12.0 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4093) DUF2250 PF10007.4 gi|327310980|ref|YP_004337877.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.1 gi|327310980|ref|YP_004337877.1| - 0.11 12.1 0.2 0.48 10.1 0.0 2.2 2 1 1 3 3 3 0 Homeodomain-like domain NUMOD1 PF07453.8 gi|327310980|ref|YP_004337877.1| - 0.12 12.2 0.1 0.29 11.0 0.1 1.6 2 0 0 2 2 1 0 NUMOD1 domain Phage_rep_org_N PF09681.5 gi|327310980|ref|YP_004337877.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.4 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) FLgD_tudor PF13861.1 gi|327310981|ref|YP_004337878.1| - 0.16 11.9 0.3 0.31 11.0 0.1 1.6 1 1 0 1 1 1 0 FlgD Tudor-like domain Cytochrom_C_asm PF01578.15 gi|327310982|ref|YP_004337879.1| - 2.1e-08 33.9 4.6 2.1e-08 33.9 3.2 1.7 2 0 0 2 2 2 1 Cytochrome C assembly protein Cytochrom_C_asm PF01578.15 gi|327310983|ref|YP_004337880.1| - 3.2e-12 46.4 24.2 9.7e-11 41.6 6.5 3.2 3 1 0 3 3 3 2 Cytochrome C assembly protein Tetraspannin PF00335.15 gi|327310983|ref|YP_004337880.1| - 3.1 7.0 8.4 6 6.0 0.5 2.6 2 1 0 2 2 2 0 Tetraspanin family ABC_tran PF00005.22 gi|327310984|ref|YP_004337881.1| - 1.5e-18 67.4 0.0 2.6e-18 66.6 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327310984|ref|YP_004337881.1| - 4e-08 33.5 0.0 0.0035 17.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|327310984|ref|YP_004337881.1| - 4.9e-05 22.7 0.0 8.5e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|327310984|ref|YP_004337881.1| - 0.0037 17.6 0.0 0.0048 17.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327310984|ref|YP_004337881.1| - 0.015 15.2 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DUF3584 PF12128.3 gi|327310984|ref|YP_004337881.1| - 0.025 11.9 0.0 0.032 11.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_19 PF13245.1 gi|327310984|ref|YP_004337881.1| - 0.027 14.2 0.3 0.068 12.9 0.2 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_13 PF13166.1 gi|327310984|ref|YP_004337881.1| - 0.031 12.7 0.0 0.037 12.4 0.0 1.0 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|327310984|ref|YP_004337881.1| - 0.055 13.6 0.0 0.097 12.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|327310984|ref|YP_004337881.1| - 0.058 13.8 0.0 0.08 13.4 0.0 1.2 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|327310984|ref|YP_004337881.1| - 0.061 13.0 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|327310984|ref|YP_004337881.1| - 0.063 12.4 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|327310984|ref|YP_004337881.1| - 0.071 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|327310984|ref|YP_004337881.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|327310984|ref|YP_004337881.1| - 0.12 11.2 0.1 0.24 10.2 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF815 PF05673.8 gi|327310984|ref|YP_004337881.1| - 0.12 11.3 0.1 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|327310984|ref|YP_004337881.1| - 0.12 11.7 0.1 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC2_membrane_4 PF12730.2 gi|327310985|ref|YP_004337882.1| - 4.5e-08 32.5 3.3 4.5e-08 32.5 2.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|327310985|ref|YP_004337882.1| - 0.0013 17.9 4.1 0.0016 17.6 2.8 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|327310985|ref|YP_004337882.1| - 0.22 10.5 2.9 0.29 10.1 2.0 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein Nitro_FeMo-Co PF02579.12 gi|327310986|ref|YP_004337883.1| - 2.1e-06 27.7 0.0 0.00032 20.7 0.0 2.2 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor COXG PF06240.8 gi|327310987|ref|YP_004337884.1| - 3.5e-05 23.4 0.0 4.4e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) TusA PF01206.12 gi|327310988|ref|YP_004337885.1| - 3.7e-16 58.4 0.0 4.1e-16 58.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2375 PF09558.5 gi|327310990|ref|YP_004337887.1| - 0.12 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2375) Nitroreductase PF00881.19 gi|327310991|ref|YP_004337888.1| - 2.1e-26 92.6 0.0 2.7e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Arylesterase PF01731.15 gi|327310992|ref|YP_004337889.1| - 0.13 12.3 0.0 0.53 10.2 0.0 2.1 2 0 0 2 2 2 0 Arylesterase Sulf_transp PF04143.9 gi|327310993|ref|YP_004337890.1| - 4.4e-15 55.4 28.1 3.7e-09 36.4 8.3 4.4 4 0 0 4 4 4 2 Sulphur transport TOM13 PF08219.6 gi|327310993|ref|YP_004337890.1| - 3.6 7.4 5.4 2 8.2 0.8 2.4 1 1 1 2 2 2 0 Outer membrane protein TOM13 DrsE PF02635.10 gi|327310994|ref|YP_004337891.1| - 1.3e-06 28.5 0.0 1.5e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|327310994|ref|YP_004337891.1| - 0.029 14.1 0.0 0.068 12.9 0.0 1.5 1 1 0 2 2 2 0 DsrE/DsrF/DrsH-like family TusA PF01206.12 gi|327310995|ref|YP_004337892.1| - 6.3e-19 67.3 0.0 7.8e-19 67.0 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|327310995|ref|YP_004337892.1| - 0.0096 15.4 0.0 0.021 14.4 0.0 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Cytochrom_D1 PF02239.11 gi|327310997|ref|YP_004337894.1| - 0.00045 18.6 0.0 0.026 12.8 0.0 2.4 2 0 0 2 2 2 1 Cytochrome D1 heme domain Atg14 PF10186.4 gi|327310997|ref|YP_004337894.1| - 0.00059 18.8 0.4 0.00089 18.2 0.3 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 TMF_DNA_bd PF12329.3 gi|327310997|ref|YP_004337894.1| - 0.0036 17.0 2.4 0.006 16.3 1.7 1.2 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|327310997|ref|YP_004337894.1| - 0.015 14.7 2.1 0.026 13.9 1.5 1.4 1 0 0 1 1 1 0 Septum formation initiator IncA PF04156.9 gi|327310997|ref|YP_004337894.1| - 0.015 14.8 6.7 0.026 14.1 4.6 1.2 1 0 0 1 1 1 0 IncA protein DUF3573 PF12097.3 gi|327310997|ref|YP_004337894.1| - 0.016 13.8 0.1 0.023 13.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) Lactonase PF10282.4 gi|327310997|ref|YP_004337894.1| - 0.04 13.0 0.0 0.56 9.2 0.0 2.6 2 1 0 2 2 2 0 Lactonase, 7-bladed beta-propeller DUF4618 PF15397.1 gi|327310997|ref|YP_004337894.1| - 0.061 12.6 0.1 0.087 12.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) ATG16 PF08614.6 gi|327310997|ref|YP_004337894.1| - 0.073 12.8 0.7 0.11 12.3 0.5 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) SlyX PF04102.7 gi|327310997|ref|YP_004337894.1| - 0.095 13.0 0.8 0.18 12.2 0.5 1.4 1 0 0 1 1 1 0 SlyX PspA_IM30 PF04012.7 gi|327310997|ref|YP_004337894.1| - 0.11 11.8 3.4 0.15 11.3 2.4 1.1 1 0 0 1 1 1 0 PspA/IM30 family HR1 PF02185.11 gi|327310997|ref|YP_004337894.1| - 0.13 12.0 2.5 0.24 11.1 1.7 1.4 1 0 0 1 1 1 0 Hr1 repeat DUF1192 PF06698.6 gi|327310997|ref|YP_004337894.1| - 0.13 12.0 0.7 0.28 11.0 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) Tropomyosin_1 PF12718.2 gi|327310997|ref|YP_004337894.1| - 0.14 11.9 0.1 0.2 11.4 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin like DUF3373 PF11853.3 gi|327310997|ref|YP_004337894.1| - 0.17 10.3 0.1 0.22 10.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) ADIP PF11559.3 gi|327310997|ref|YP_004337894.1| - 0.23 11.3 2.6 0.38 10.6 1.8 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF948 PF06103.6 gi|327310997|ref|YP_004337894.1| - 0.64 9.9 3.3 1.3 8.9 2.3 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF4407 PF14362.1 gi|327310997|ref|YP_004337894.1| - 0.97 8.3 5.2 0.3 9.9 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) HrpB7 PF09486.5 gi|327310997|ref|YP_004337894.1| - 0.98 9.3 4.7 1.5 8.7 3.3 1.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) DUF3450 PF11932.3 gi|327310997|ref|YP_004337894.1| - 2 7.5 5.8 2.7 7.1 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF2530 PF10745.4 gi|327310998|ref|YP_004337895.1| - 0.6 10.1 4.2 2.5 8.1 0.2 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2530) Pyr_redox_2 PF07992.9 gi|327310999|ref|YP_004337896.1| - 2.1e-11 44.0 0.0 7.5e-10 39.0 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|327310999|ref|YP_004337896.1| - 3e-06 27.1 0.9 1.2e-05 25.2 0.6 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|327310999|ref|YP_004337896.1| - 5.1e-05 22.4 2.9 7.1e-05 22.0 2.0 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|327310999|ref|YP_004337896.1| - 0.00025 20.0 5.5 0.00025 20.0 3.8 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|327310999|ref|YP_004337896.1| - 0.0025 16.9 0.6 0.0048 16.0 0.4 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|327310999|ref|YP_004337896.1| - 0.0037 16.1 4.4 0.0037 16.1 3.1 1.8 2 0 0 2 2 2 1 FAD binding domain TAT_signal PF10518.4 gi|327310999|ref|YP_004337896.1| - 0.016 15.1 4.2 0.016 15.1 2.9 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence GIDA PF01134.17 gi|327310999|ref|YP_004337896.1| - 0.026 13.3 2.3 0.043 12.6 1.4 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|327310999|ref|YP_004337896.1| - 0.052 13.6 0.1 0.093 12.8 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|327310999|ref|YP_004337896.1| - 0.075 11.9 1.1 0.11 11.4 0.8 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|327310999|ref|YP_004337896.1| - 0.12 10.9 1.3 0.17 10.4 0.9 1.2 1 0 0 1 1 1 0 Tryptophan halogenase HI0933_like PF03486.9 gi|327310999|ref|YP_004337896.1| - 0.13 10.7 1.4 0.18 10.2 0.9 1.1 1 0 0 1 1 1 0 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|327310999|ref|YP_004337896.1| - 0.2 11.2 1.8 0.33 10.4 1.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|327310999|ref|YP_004337896.1| - 0.3 11.4 3.0 1 9.8 1.8 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|327310999|ref|YP_004337896.1| - 0.34 10.7 1.8 0.58 9.9 1.3 1.3 1 0 0 1 1 1 0 ThiF family FAD_oxidored PF12831.2 gi|327310999|ref|YP_004337896.1| - 0.87 8.5 4.5 1.2 8.0 3.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|327311000|ref|YP_004337897.1| - 7.4e-11 42.2 0.0 1.6e-10 41.2 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|327311000|ref|YP_004337897.1| - 4.3e-05 23.3 0.1 0.024 14.3 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding DAO PF01266.19 gi|327311000|ref|YP_004337897.1| - 0.039 12.8 0.1 0.087 11.7 0.0 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|327311000|ref|YP_004337897.1| - 0.14 10.7 0.0 0.39 9.2 0.0 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|327311000|ref|YP_004337897.1| - 0.14 12.6 0.1 2.7 8.4 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|327311000|ref|YP_004337897.1| - 0.19 10.5 0.1 3.1 6.5 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A DUF1641 PF07849.6 gi|327311001|ref|YP_004337898.1| - 1.1e-14 53.7 0.0 1.8e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) DUF3562 PF12085.3 gi|327311001|ref|YP_004337898.1| - 0.12 12.2 0.1 7.3 6.5 0.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3562) DUF2958 PF11171.3 gi|327311002|ref|YP_004337899.1| - 0.029 14.2 0.0 0.064 13.0 0.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2958) DUF1641 PF07849.6 gi|327311003|ref|YP_004337900.1| - 1e-15 57.0 0.0 2.2e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HALZ PF02183.13 gi|327311003|ref|YP_004337900.1| - 3.2e-05 23.5 0.4 5.7e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 Homeobox associated leucine zipper Pyr_redox_2 PF07992.9 gi|327311004|ref|YP_004337901.1| - 6.4e-12 45.7 0.0 9.2e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|327311004|ref|YP_004337901.1| - 9.2e-05 22.7 0.1 0.047 14.0 0.0 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|327311004|ref|YP_004337901.1| - 0.025 13.5 0.3 0.053 12.4 0.0 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|327311004|ref|YP_004337901.1| - 0.12 12.4 0.5 5.4 7.1 0.0 3.1 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Acetyltransf_1 PF00583.19 gi|327311005|ref|YP_004337902.1| - 3e-17 62.4 2.2 4.5e-17 61.8 1.5 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|327311005|ref|YP_004337902.1| - 3.1e-12 46.6 0.3 4.2e-12 46.2 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|327311005|ref|YP_004337902.1| - 1.4e-10 41.5 0.0 1.6e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|327311005|ref|YP_004337902.1| - 4.3e-10 39.6 0.1 6.1e-10 39.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|327311005|ref|YP_004337902.1| - 4.4e-10 39.7 0.0 6.5e-10 39.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|327311005|ref|YP_004337902.1| - 7.3e-07 29.1 0.0 1.1e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|327311005|ref|YP_004337902.1| - 1e-05 25.3 0.0 1.9e-05 24.5 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|327311005|ref|YP_004337902.1| - 2.1e-05 24.1 0.8 8.8e-05 22.1 0.5 1.9 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|327311005|ref|YP_004337902.1| - 0.00055 19.9 0.5 0.00087 19.2 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acyl-CoA_dh_N PF02771.11 gi|327311005|ref|YP_004337902.1| - 0.004 17.7 0.1 0.0059 17.1 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acetyltransf_CG PF14542.1 gi|327311005|ref|YP_004337902.1| - 0.0068 16.2 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|327311005|ref|YP_004337902.1| - 0.019 14.5 1.0 0.028 14.0 0.7 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4199 PF13858.1 gi|327311006|ref|YP_004337903.1| - 1.1e-07 31.9 2.0 1.1e-07 31.9 1.4 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF4199) DUF2422 PF10337.4 gi|327311006|ref|YP_004337903.1| - 9.7e-05 21.3 2.8 0.0001 21.2 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2422) LysE PF01810.13 gi|327311006|ref|YP_004337903.1| - 0.0093 15.2 7.7 0.028 13.6 5.4 1.8 1 1 0 1 1 1 1 LysE type translocator DUF2839 PF10999.3 gi|327311006|ref|YP_004337903.1| - 0.013 15.5 1.5 0.013 15.5 1.1 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2839) FGGY_C PF02782.11 gi|327311006|ref|YP_004337903.1| - 0.061 12.9 0.5 0.1 12.2 0.4 1.4 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain Gly-zipper_OmpA PF13436.1 gi|327311006|ref|YP_004337903.1| - 0.26 10.9 10.4 0.67 9.6 1.5 2.4 1 1 1 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain Rick_17kDa_Anti PF05433.10 gi|327311006|ref|YP_004337903.1| - 0.38 10.4 0.1 0.38 10.4 0.1 3.2 4 0 0 4 4 3 0 Glycine zipper 2TM domain ATP_synt_I PF03899.10 gi|327311006|ref|YP_004337903.1| - 1.3 9.1 17.9 57 3.9 8.3 3.0 1 1 1 2 2 2 0 ATP synthase I chain DUF3329 PF11808.3 gi|327311006|ref|YP_004337903.1| - 2.9 8.0 7.6 0.28 11.2 1.1 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3329) Romo1 PF10247.4 gi|327311006|ref|YP_004337903.1| - 6 7.1 10.4 9.2 6.5 0.1 3.0 2 1 1 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 Yip1 PF04893.12 gi|327311006|ref|YP_004337903.1| - 7.9 5.9 19.8 3.7e+02 0.4 13.7 2.2 1 1 0 1 1 1 0 Yip1 domain AP_endonuc_2 PF01261.19 gi|327311007|ref|YP_004337904.1| - 0.04 13.2 0.0 0.058 12.6 0.0 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel EAL PF00563.15 gi|327311007|ref|YP_004337904.1| - 0.057 12.8 0.0 0.071 12.5 0.0 1.1 1 0 0 1 1 1 0 EAL domain TrmB PF01978.14 gi|327311008|ref|YP_004337905.1| - 3.3e-06 26.7 0.0 7.9e-06 25.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|327311008|ref|YP_004337905.1| - 2.4e-05 23.6 0.0 5.3e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|327311008|ref|YP_004337905.1| - 6.9e-05 22.4 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|327311008|ref|YP_004337905.1| - 0.00016 21.2 0.0 0.00031 20.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|327311008|ref|YP_004337905.1| - 0.00021 20.7 0.0 0.00039 19.9 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|327311008|ref|YP_004337905.1| - 0.00028 20.4 0.0 0.0013 18.3 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|327311008|ref|YP_004337905.1| - 0.00038 20.2 0.0 0.001 18.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1805 PF08827.6 gi|327311008|ref|YP_004337905.1| - 0.0036 17.0 0.7 0.0094 15.7 0.2 1.9 2 1 0 2 2 2 1 Domain of unknown function (DUF1805) HTH_IclR PF09339.5 gi|327311008|ref|YP_004337905.1| - 0.004 16.7 0.1 0.027 14.0 0.0 2.2 2 1 1 3 3 3 1 IclR helix-turn-helix domain FaeA PF04703.7 gi|327311008|ref|YP_004337905.1| - 0.016 15.3 0.0 0.033 14.3 0.0 1.5 2 0 0 2 2 2 0 FaeA-like protein HTH_45 PF14947.1 gi|327311008|ref|YP_004337905.1| - 0.025 14.3 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|327311008|ref|YP_004337905.1| - 0.037 13.6 0.1 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain z-alpha PF02295.12 gi|327311008|ref|YP_004337905.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain PqqD PF05402.7 gi|327311008|ref|YP_004337905.1| - 0.15 12.1 0.4 3.9 7.5 0.0 2.8 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) Arch_ATPase PF01637.13 gi|327311010|ref|YP_004337907.1| - 1.7e-32 113.0 0.0 2.6e-32 112.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|327311010|ref|YP_004337907.1| - 3.5e-08 33.6 0.0 1.6e-07 31.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|327311010|ref|YP_004337907.1| - 9.6e-08 32.2 2.4 3.1e-07 30.5 0.5 2.6 2 2 1 3 3 3 1 AAA ATPase domain AAA_14 PF13173.1 gi|327311010|ref|YP_004337907.1| - 2.5e-07 30.6 0.0 0.023 14.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain RuvA_C PF07499.8 gi|327311010|ref|YP_004337907.1| - 0.034 14.2 0.3 1.8 8.7 0.0 2.5 2 0 0 2 2 2 0 RuvA, C-terminal domain TIM PF00121.13 gi|327311011|ref|YP_004337908.1| - 3.1e-31 108.2 0.0 3.4e-29 101.6 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.10 gi|327311011|ref|YP_004337908.1| - 1.4e-05 24.4 5.1 2.1e-05 23.8 3.5 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.9 gi|327311011|ref|YP_004337908.1| - 1.6e-05 24.0 1.5 2.2e-05 23.6 0.2 1.8 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|327311011|ref|YP_004337908.1| - 0.00017 20.7 0.0 0.00033 19.8 0.0 1.4 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|327311011|ref|YP_004337908.1| - 0.00019 20.7 0.1 0.00065 19.0 0.0 1.8 2 1 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|327311011|ref|YP_004337908.1| - 0.0072 15.2 0.4 0.0072 15.2 0.3 2.2 1 1 1 2 2 2 1 FMN-dependent dehydrogenase Peripla_BP_6 PF13458.1 gi|327311011|ref|YP_004337908.1| - 0.0089 15.4 0.2 0.014 14.8 0.1 1.4 1 0 0 1 1 1 1 Periplasmic binding protein PcrB PF01884.12 gi|327311011|ref|YP_004337908.1| - 0.019 14.2 0.1 0.18 11.0 0.1 2.0 2 0 0 2 2 2 0 PcrB family DUF1263 PF06882.7 gi|327311011|ref|YP_004337908.1| - 0.052 13.1 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1263) VirB3 PF05101.8 gi|327311012|ref|YP_004337909.1| - 1.7 8.7 7.7 2.2 8.3 0.0 3.1 3 0 0 3 3 3 0 Type IV secretory pathway, VirB3-like protein DUF996 PF06195.8 gi|327311012|ref|YP_004337909.1| - 1.7 8.6 18.6 0.49 10.3 9.3 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF996) DUF1129 PF06570.6 gi|327311012|ref|YP_004337909.1| - 3.4 6.9 7.2 14 4.8 3.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) HTH_45 PF14947.1 gi|327311013|ref|YP_004337910.1| - 2.9e-14 52.6 0.0 3.5e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.11 gi|327311013|ref|YP_004337910.1| - 0.029 14.4 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain TrmB PF01978.14 gi|327311013|ref|YP_004337910.1| - 0.061 13.0 0.1 0.093 12.4 0.1 1.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|327311013|ref|YP_004337910.1| - 0.065 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|327311013|ref|YP_004337910.1| - 0.068 12.8 0.5 0.13 11.9 0.3 1.6 1 1 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|327311013|ref|YP_004337910.1| - 0.093 13.0 0.1 0.12 12.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain GSK-3_bind PF05350.7 gi|327311014|ref|YP_004337911.1| - 0.46 9.8 5.4 0.36 10.2 2.3 1.9 1 1 1 2 2 2 0 Glycogen synthase kinase-3 binding Beta_propel PF09826.4 gi|327311015|ref|YP_004337912.1| - 9.2e-82 275.0 0.0 1.5e-66 224.8 0.0 2.7 1 1 0 2 2 2 2 Beta propeller domain PaREP1 PF05942.6 gi|327311016|ref|YP_004337913.1| - 9.6e-08 31.8 3.0 1.6e-07 31.2 2.1 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|327311016|ref|YP_004337913.1| - 0.067 13.0 2.3 0.15 11.9 1.3 1.8 1 1 1 2 2 2 0 HEPN domain Erp_C PF06780.6 gi|327311016|ref|YP_004337913.1| - 0.18 11.6 0.8 0.3 10.9 0.5 1.4 1 1 0 1 1 1 0 Erp protein C-terminus DUF4644 PF15486.1 gi|327311017|ref|YP_004337914.1| - 0.13 12.2 0.3 0.14 12.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4644) Y_Y_Y PF07495.8 gi|327311018|ref|YP_004337915.1| - 0.013 15.2 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Y_Y_Y domain DUF4397 PF14344.1 gi|327311018|ref|YP_004337915.1| - 0.24 11.7 6.8 0.095 13.0 2.8 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4397) PmbA_TldD PF01523.11 gi|327311020|ref|YP_004337917.1| - 2.2e-52 178.1 0.5 2.8e-52 177.8 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|327311021|ref|YP_004337918.1| - 1.3e-32 113.3 0.5 1.6e-32 112.9 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Radical_SAM PF04055.16 gi|327311021|ref|YP_004337918.1| - 0.089 12.9 0.0 4.6 7.4 0.0 2.5 3 0 0 3 3 3 0 Radical SAM superfamily PALP PF00291.20 gi|327311022|ref|YP_004337919.1| - 8.5e-33 113.8 0.0 1.1e-32 113.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_23 PF13384.1 gi|327311023|ref|YP_004337920.1| - 7.3e-06 25.4 1.1 1.1e-05 24.9 0.1 1.8 2 0 0 2 2 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|327311023|ref|YP_004337920.1| - 0.0001 21.8 0.0 0.00022 20.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|327311023|ref|YP_004337920.1| - 0.0002 20.8 0.3 0.00044 19.7 0.2 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|327311023|ref|YP_004337920.1| - 0.00027 20.6 0.1 0.00066 19.4 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|327311023|ref|YP_004337920.1| - 0.00044 20.3 0.1 0.0007 19.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_DeoR PF08220.7 gi|327311023|ref|YP_004337920.1| - 0.0011 18.5 0.1 0.0018 17.8 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|327311023|ref|YP_004337920.1| - 0.0011 18.3 0.0 0.0011 18.3 0.0 2.2 3 0 0 3 3 2 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|327311023|ref|YP_004337920.1| - 0.0025 17.7 0.1 0.0056 16.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|327311023|ref|YP_004337920.1| - 0.0026 17.4 0.0 0.0079 15.8 0.0 1.8 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Tnp_ISL3 PF13542.1 gi|327311023|ref|YP_004337920.1| - 0.0038 16.3 0.1 0.0085 15.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|327311023|ref|YP_004337920.1| - 0.0047 16.4 0.5 0.016 14.7 0.1 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|327311023|ref|YP_004337920.1| - 0.0059 15.9 0.0 0.016 14.5 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|327311023|ref|YP_004337920.1| - 0.0076 15.8 1.1 0.014 15.0 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_7 PF02796.10 gi|327311023|ref|YP_004337920.1| - 0.012 15.4 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_AsnC-type PF13404.1 gi|327311023|ref|YP_004337920.1| - 0.014 14.9 2.9 0.016 14.7 0.4 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TetR_N PF00440.18 gi|327311023|ref|YP_004337920.1| - 0.019 14.6 0.3 0.036 13.6 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_10 PF04967.7 gi|327311023|ref|YP_004337920.1| - 0.019 14.5 0.0 0.045 13.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_3 PF01381.17 gi|327311023|ref|YP_004337920.1| - 0.027 14.3 0.1 0.063 13.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix GerE PF00196.14 gi|327311023|ref|YP_004337920.1| - 0.037 13.3 0.0 0.063 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|327311023|ref|YP_004337920.1| - 0.038 13.2 0.2 0.038 13.2 0.2 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_40 PF14493.1 gi|327311023|ref|YP_004337920.1| - 0.042 14.0 0.0 0.083 13.1 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.1 gi|327311023|ref|YP_004337920.1| - 0.06 13.1 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 HTH domain LacI PF00356.16 gi|327311023|ref|YP_004337920.1| - 0.069 12.7 0.8 0.24 11.0 0.0 2.2 2 1 1 3 3 2 0 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.14 gi|327311023|ref|YP_004337920.1| - 0.072 13.0 0.1 0.15 12.0 0.0 1.6 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_1 PF01527.15 gi|327311023|ref|YP_004337920.1| - 0.083 12.8 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Transposase PaaX PF07848.7 gi|327311023|ref|YP_004337920.1| - 0.1 12.5 0.4 0.22 11.5 0.2 1.7 2 0 0 2 2 1 0 PaaX-like protein DUF2379 PF09543.5 gi|327311023|ref|YP_004337920.1| - 0.11 12.4 2.8 0.16 11.9 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) HTH_17 PF12728.2 gi|327311023|ref|YP_004337920.1| - 0.12 12.6 0.3 0.58 10.4 0.1 2.3 2 1 0 2 2 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|327311023|ref|YP_004337920.1| - 0.25 10.9 0.1 0.25 10.9 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_31 PF13560.1 gi|327311023|ref|YP_004337920.1| - 0.29 11.3 6.2 0.18 12.0 2.7 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.16 gi|327311023|ref|YP_004337920.1| - 0.57 9.6 3.1 1.5 8.3 0.2 2.9 2 1 1 3 3 3 0 Bacterial regulatory proteins, gntR family KaiC PF06745.8 gi|327311024|ref|YP_004337921.1| - 6.9e-82 273.9 0.0 8.5e-82 273.6 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|327311024|ref|YP_004337921.1| - 2.1e-08 33.8 0.1 6.7e-08 32.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|327311024|ref|YP_004337921.1| - 0.0073 15.3 0.1 0.018 13.9 0.1 1.7 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|327311024|ref|YP_004337921.1| - 0.014 15.4 0.1 0.037 14.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|327311024|ref|YP_004337921.1| - 0.11 12.6 0.5 0.3 11.2 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|327311024|ref|YP_004337921.1| - 0.12 12.1 3.6 0.079 12.7 0.7 2.0 2 0 0 2 2 2 0 Part of AAA domain PaREP1 PF05942.6 gi|327311025|ref|YP_004337922.1| - 1.9e-30 105.1 1.9 2.3e-30 104.7 1.3 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|327311025|ref|YP_004337922.1| - 0.23 11.3 1.3 7.9 6.3 0.6 2.1 2 0 0 2 2 2 0 HEPN domain SPOR PF05036.8 gi|327311026|ref|YP_004337923.1| - 0.0048 17.0 0.2 0.01 15.9 0.1 1.5 1 0 0 1 1 1 1 Sporulation related domain V_ATPase_I PF01496.14 gi|327311026|ref|YP_004337923.1| - 4.4 5.0 5.6 6.5 4.4 3.9 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Aldedh PF00171.17 gi|327311027|ref|YP_004337924.1| - 3.2e-114 381.7 0.0 4.4e-114 381.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|327311027|ref|YP_004337924.1| - 0.037 12.7 0.0 0.19 10.4 0.0 1.8 2 0 0 2 2 2 0 Acyl-CoA reductase (LuxC) Aldedh PF00171.17 gi|327311028|ref|YP_004337925.1| - 3e-121 405.0 0.0 3.4e-121 404.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|327311028|ref|YP_004337925.1| - 7.2e-06 24.9 0.0 1.1e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) TGS PF02824.16 gi|327311028|ref|YP_004337925.1| - 0.075 12.8 0.1 0.86 9.4 0.0 2.5 2 0 0 2 2 2 0 TGS domain Acylphosphatase PF00708.13 gi|327311029|ref|YP_004337926.1| - 1.6e-19 69.7 0.0 3.2e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase TusA PF01206.12 gi|327311030|ref|YP_004337927.1| - 7.2e-27 92.8 0.0 8.2e-27 92.6 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|327311030|ref|YP_004337927.1| - 2.2e-08 33.5 0.2 6.1e-08 32.1 0.1 1.6 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Lipase_GDSL_2 PF13472.1 gi|327311032|ref|YP_004337929.1| - 3.1e-27 95.8 0.0 3.5e-27 95.6 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|327311032|ref|YP_004337929.1| - 1.1e-14 54.8 0.0 1.4e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase NurA PF09376.5 gi|327311033|ref|YP_004337930.1| - 2.4e-36 125.5 0.2 3.3e-36 125.0 0.1 1.2 1 0 0 1 1 1 1 NurA domain CbiA PF01656.18 gi|327311034|ref|YP_004337931.1| - 3.5e-18 65.7 0.0 4.8e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|327311034|ref|YP_004337931.1| - 1e-11 45.0 0.0 6.5e-11 42.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|327311034|ref|YP_004337931.1| - 4e-06 26.0 0.2 6.1e-06 25.4 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|327311034|ref|YP_004337931.1| - 0.00099 18.2 0.1 0.002 17.2 0.1 1.5 1 0 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|327311034|ref|YP_004337931.1| - 0.0011 18.4 0.1 0.032 13.5 0.2 2.2 2 0 0 2 2 2 1 YhjQ protein SRP54 PF00448.17 gi|327311034|ref|YP_004337931.1| - 0.0089 15.4 0.0 0.053 12.9 0.0 2.1 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|327311034|ref|YP_004337931.1| - 0.011 15.1 0.2 0.027 13.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|327311034|ref|YP_004337931.1| - 0.015 14.3 0.1 1.6 7.7 0.1 2.6 3 0 0 3 3 3 0 VirC1 protein AAA_10 PF12846.2 gi|327311034|ref|YP_004337931.1| - 0.016 14.6 0.1 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|327311034|ref|YP_004337931.1| - 0.018 13.8 0.7 0.043 12.5 0.2 1.8 2 0 0 2 2 2 0 ArgK protein KdpD PF02702.12 gi|327311034|ref|YP_004337931.1| - 0.029 13.5 0.0 0.063 12.4 0.0 1.5 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_22 PF13401.1 gi|327311034|ref|YP_004337931.1| - 0.051 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|327311034|ref|YP_004337931.1| - 0.062 12.8 0.0 0.22 11.0 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Abhydrolase_5 PF12695.2 gi|327311034|ref|YP_004337931.1| - 0.071 12.8 0.0 0.2 11.4 0.0 1.8 1 1 0 1 1 1 0 Alpha/beta hydrolase family AAA_19 PF13245.1 gi|327311034|ref|YP_004337931.1| - 0.28 10.9 1.6 0.86 9.4 0.0 2.4 2 1 0 2 2 2 0 Part of AAA domain DUF1626 PF07788.6 gi|327311035|ref|YP_004337932.1| - 3.9e-12 45.7 0.5 7.1e-12 44.9 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) CCDC155 PF14662.1 gi|327311035|ref|YP_004337932.1| - 0.01 15.4 1.8 0.018 14.6 1.2 1.5 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 Spc7 PF08317.6 gi|327311035|ref|YP_004337932.1| - 0.017 13.7 0.2 0.028 13.0 0.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein ACR_tran PF00873.14 gi|327311035|ref|YP_004337932.1| - 0.022 12.2 0.0 0.027 11.9 0.0 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Spectrin PF00435.16 gi|327311035|ref|YP_004337932.1| - 0.029 14.6 2.0 0.029 14.6 1.4 1.6 2 0 0 2 2 2 0 Spectrin repeat Phage_GPO PF05929.6 gi|327311035|ref|YP_004337932.1| - 0.03 13.5 0.8 0.054 12.7 0.6 1.4 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF3584 PF12128.3 gi|327311035|ref|YP_004337932.1| - 0.031 11.6 0.3 0.035 11.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BLOC1_2 PF10046.4 gi|327311035|ref|YP_004337932.1| - 0.038 14.1 0.4 0.16 12.1 0.3 2.0 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.4 gi|327311035|ref|YP_004337932.1| - 0.059 12.2 1.1 0.083 11.8 0.8 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Cor1 PF04803.7 gi|327311035|ref|YP_004337932.1| - 0.069 12.9 0.5 0.11 12.2 0.3 1.4 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region FlgN PF05130.7 gi|327311035|ref|YP_004337932.1| - 0.098 12.9 3.4 0.16 12.2 2.4 1.3 1 0 0 1 1 1 0 FlgN protein IncA PF04156.9 gi|327311035|ref|YP_004337932.1| - 0.11 12.0 2.4 0.18 11.3 1.6 1.4 1 0 0 1 1 1 0 IncA protein Transposase_22 PF02994.9 gi|327311035|ref|YP_004337932.1| - 0.12 10.8 2.9 0.16 10.4 2.0 1.1 1 0 0 1 1 1 0 L1 transposable element DUF4559 PF15112.1 gi|327311035|ref|YP_004337932.1| - 0.13 11.3 0.1 0.19 10.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Hemerythrin PF01814.18 gi|327311035|ref|YP_004337932.1| - 1.2 9.2 8.7 1.5 9.0 5.0 1.8 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain Seryl_tRNA_N PF02403.17 gi|327311035|ref|YP_004337932.1| - 1.9 8.5 6.9 13 5.8 1.5 2.7 3 0 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|327311035|ref|YP_004337932.1| - 5.5 7.2 9.2 3.1 8.0 3.0 2.6 2 1 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain AAA_5 PF07728.9 gi|327311037|ref|YP_004337934.1| - 1e-21 77.1 0.0 1.6e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|327311037|ref|YP_004337934.1| - 2.6e-06 27.0 0.1 6.1e-06 25.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|327311037|ref|YP_004337934.1| - 0.0016 18.6 0.0 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|327311037|ref|YP_004337934.1| - 0.0045 16.6 0.0 0.64 9.6 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|327311037|ref|YP_004337934.1| - 0.0071 15.5 0.0 0.017 14.2 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|327311037|ref|YP_004337934.1| - 0.028 14.1 0.0 0.1 12.3 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|327311037|ref|YP_004337934.1| - 0.031 14.2 0.1 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|327311037|ref|YP_004337934.1| - 0.041 14.6 0.0 0.088 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|327311037|ref|YP_004337934.1| - 0.048 13.0 0.0 0.087 12.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|327311037|ref|YP_004337934.1| - 0.067 13.3 0.0 0.44 10.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain Hpr_kinase_C PF07475.7 gi|327311037|ref|YP_004337934.1| - 0.074 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain TIP49 PF06068.8 gi|327311037|ref|YP_004337934.1| - 0.16 10.6 0.0 0.24 10.0 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus Methyltransf_23 PF13489.1 gi|327311040|ref|YP_004337937.1| - 6.5e-06 25.9 0.0 1.3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Aminotran_5 PF00266.14 gi|327311042|ref|YP_004337939.1| - 2e-29 102.5 0.0 2.8e-29 102.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Hep_core_N PF08290.6 gi|327311042|ref|YP_004337939.1| - 0.1 12.0 1.7 0.21 11.0 1.2 1.4 1 0 0 1 1 1 0 Hepatitis core protein, putative zinc finger MFS_1 PF07690.11 gi|327311043|ref|YP_004337940.1| - 5.9e-34 117.3 102.2 2.1e-27 95.8 41.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|327311043|ref|YP_004337940.1| - 2.2e-05 23.2 34.3 2.5e-05 23.0 8.9 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|327311043|ref|YP_004337940.1| - 0.014 15.1 5.6 0.92 9.3 0.0 3.6 4 0 0 4 4 4 0 MFS_1 like family Thioredoxin PF00085.15 gi|327311044|ref|YP_004337941.1| - 0.00011 21.7 0.0 0.00012 21.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|327311044|ref|YP_004337941.1| - 0.031 14.4 0.4 2.6 8.2 0.3 2.1 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|327311044|ref|YP_004337941.1| - 0.05 13.4 0.0 0.067 13.0 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain MFS_1 PF07690.11 gi|327311046|ref|YP_004337943.1| - 1.3e-17 63.5 61.2 2.8e-11 42.7 26.7 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily RskA PF10099.4 gi|327311046|ref|YP_004337943.1| - 2.3 7.8 5.2 0.36 10.5 0.6 1.8 2 0 0 2 2 2 0 Anti-sigma-K factor rskA Thioredoxin_4 PF13462.1 gi|327311047|ref|YP_004337944.1| - 4e-16 59.4 0.0 6.1e-16 58.8 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|327311047|ref|YP_004337944.1| - 0.00031 20.9 0.0 0.0041 17.3 0.0 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|327311047|ref|YP_004337944.1| - 0.02 14.4 0.1 0.074 12.5 0.0 1.8 2 0 0 2 2 2 0 DSBA-like thioredoxin domain AIRS_C PF02769.17 gi|327311048|ref|YP_004337945.1| - 1.9e-22 79.9 0.1 3e-22 79.2 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|327311048|ref|YP_004337945.1| - 1.1e-07 32.0 0.4 2.3e-07 30.9 0.1 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain DrsE PF02635.10 gi|327311049|ref|YP_004337946.1| - 1.1e-05 25.5 0.0 1.3e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.12 gi|327311050|ref|YP_004337947.1| - 2.7e-09 36.5 0.0 2.9e-09 36.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|327311050|ref|YP_004337947.1| - 0.00027 20.4 0.0 0.00044 19.7 0.0 1.6 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Acetyltransf_1 PF00583.19 gi|327311051|ref|YP_004337948.1| - 2.1e-17 62.9 0.1 4.1e-17 61.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|327311051|ref|YP_004337948.1| - 2.8e-08 33.3 0.0 4.6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|327311051|ref|YP_004337948.1| - 9.1e-08 32.2 0.1 1.6e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|327311051|ref|YP_004337948.1| - 1.2e-07 31.7 0.3 2e-07 31.0 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|327311051|ref|YP_004337948.1| - 4.7e-07 29.7 0.1 1e-06 28.6 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|327311051|ref|YP_004337948.1| - 2.6e-06 27.5 0.0 4.3e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|327311051|ref|YP_004337948.1| - 3.9e-05 23.8 0.1 0.00038 20.6 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|327311051|ref|YP_004337948.1| - 8e-05 22.2 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|327311051|ref|YP_004337948.1| - 0.027 14.3 0.2 0.045 13.6 0.1 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|327311051|ref|YP_004337948.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PALP PF00291.20 gi|327311054|ref|YP_004337951.1| - 2.5e-31 109.0 0.0 4.6e-31 108.1 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme AAA_10 PF12846.2 gi|327311055|ref|YP_004337952.1| - 4.1e-23 82.2 0.0 4.5e-16 59.1 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|327311055|ref|YP_004337952.1| - 9.1e-18 64.9 0.0 1.8e-17 63.9 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|327311055|ref|YP_004337952.1| - 1.1e-09 37.3 0.0 4.4e-08 32.1 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|327311055|ref|YP_004337952.1| - 7.1e-07 28.8 0.0 3.2e-06 26.7 0.0 2.0 1 1 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|327311055|ref|YP_004337952.1| - 4.7e-05 23.4 0.1 0.00073 19.5 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.8 gi|327311055|ref|YP_004337952.1| - 0.00013 20.9 0.0 0.00037 19.4 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Zot PF05707.7 gi|327311055|ref|YP_004337952.1| - 0.00098 18.6 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) MobB PF03205.9 gi|327311055|ref|YP_004337952.1| - 0.001 18.7 0.1 0.0024 17.5 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|327311055|ref|YP_004337952.1| - 0.0035 17.0 0.0 0.035 13.7 0.0 2.1 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|327311055|ref|YP_004337952.1| - 0.0065 16.6 0.0 1.4 9.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|327311055|ref|YP_004337952.1| - 0.01 16.1 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.18 gi|327311055|ref|YP_004337952.1| - 0.015 15.2 0.0 0.034 14.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.24 gi|327311055|ref|YP_004337952.1| - 0.024 14.8 0.0 15 5.7 0.0 3.3 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|327311055|ref|YP_004337952.1| - 0.027 13.2 0.0 0.048 12.4 0.0 1.3 1 0 0 1 1 1 0 ArgK protein T2SE PF00437.15 gi|327311055|ref|YP_004337952.1| - 0.051 12.4 0.0 0.43 9.4 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein CTP-dep_RFKase PF01982.11 gi|327311056|ref|YP_004337953.1| - 2.1e-44 149.9 0.0 2.9e-44 149.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.2 gi|327311056|ref|YP_004337953.1| - 2.2e-08 33.6 0.1 4.5e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|327311056|ref|YP_004337953.1| - 3.7e-05 23.4 0.0 0.0001 22.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|327311056|ref|YP_004337953.1| - 8e-05 21.9 0.0 0.00016 21.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|327311056|ref|YP_004337953.1| - 0.00013 21.3 0.2 0.0029 17.0 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|327311056|ref|YP_004337953.1| - 0.00045 19.7 0.0 0.0012 18.4 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_8 PF02954.14 gi|327311056|ref|YP_004337953.1| - 0.00087 18.7 1.4 0.0016 17.9 0.2 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_28 PF13518.1 gi|327311056|ref|YP_004337953.1| - 0.0011 18.9 0.1 0.0025 17.8 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|327311056|ref|YP_004337953.1| - 0.0035 16.8 0.0 0.25 10.9 0.0 2.9 3 0 0 3 3 3 1 LexA DNA binding domain HTH_11 PF08279.7 gi|327311056|ref|YP_004337953.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|327311056|ref|YP_004337953.1| - 0.013 15.2 0.0 0.037 13.7 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|327311056|ref|YP_004337953.1| - 0.021 14.3 0.0 0.067 12.6 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_34 PF13601.1 gi|327311056|ref|YP_004337953.1| - 0.024 14.6 0.0 0.68 10.0 0.0 2.8 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|327311056|ref|YP_004337953.1| - 0.026 14.2 0.1 0.056 13.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.1 gi|327311056|ref|YP_004337953.1| - 0.032 14.3 0.0 0.064 13.4 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix HTH_CodY PF08222.6 gi|327311056|ref|YP_004337953.1| - 0.033 13.5 0.0 0.083 12.2 0.0 1.7 1 1 0 1 1 1 0 CodY helix-turn-helix domain HTH_36 PF13730.1 gi|327311056|ref|YP_004337953.1| - 0.047 13.8 0.0 0.091 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|327311056|ref|YP_004337953.1| - 0.048 13.9 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|327311056|ref|YP_004337953.1| - 0.074 12.3 0.1 0.34 10.2 0.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_IclR PF09339.5 gi|327311056|ref|YP_004337953.1| - 0.074 12.6 0.1 0.19 11.3 0.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|327311056|ref|YP_004337953.1| - 0.098 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain LZ_Tnp_IS481 PF13011.1 gi|327311056|ref|YP_004337953.1| - 0.11 12.9 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Rrf2 PF02082.15 gi|327311056|ref|YP_004337953.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_30 PF13556.1 gi|327311056|ref|YP_004337953.1| - 0.13 11.8 0.0 0.4 10.3 0.0 1.8 2 0 0 2 2 1 0 PucR C-terminal helix-turn-helix domain Fe_dep_repress PF01325.14 gi|327311056|ref|YP_004337953.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF3151 PF11349.3 gi|327311056|ref|YP_004337953.1| - 0.16 12.0 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3151) Aldolase_II PF00596.16 gi|327311057|ref|YP_004337954.1| - 2e-46 157.9 0.0 2.2e-46 157.7 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain DUF3148 PF11347.3 gi|327311057|ref|YP_004337954.1| - 0.0011 18.5 0.1 0.0019 17.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3148) DAO PF01266.19 gi|327311058|ref|YP_004337955.1| - 2.9e-13 49.4 0.1 9e-07 28.1 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|327311058|ref|YP_004337955.1| - 5e-13 48.4 0.1 2.2e-09 36.4 0.0 2.4 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|327311058|ref|YP_004337955.1| - 2.2e-10 39.9 0.6 0.00012 21.0 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|327311058|ref|YP_004337955.1| - 4.6e-09 35.8 5.3 0.0041 16.2 0.0 3.9 2 1 2 4 4 4 2 FAD binding domain FAD_oxidored PF12831.2 gi|327311058|ref|YP_004337955.1| - 1.4e-06 27.6 1.0 0.015 14.4 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|327311058|ref|YP_004337955.1| - 3.3e-06 26.2 0.1 6.3e-06 25.3 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|327311058|ref|YP_004337955.1| - 5e-06 25.7 0.8 1.1e-05 24.6 0.6 1.7 1 1 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|327311058|ref|YP_004337955.1| - 1.5e-05 24.9 2.4 3.4e-05 23.8 1.6 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|327311058|ref|YP_004337955.1| - 1.9e-05 24.6 0.1 8.9e-05 22.4 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|327311058|ref|YP_004337955.1| - 9.9e-05 20.9 0.1 0.00014 20.4 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein 3HCDH_N PF02737.13 gi|327311058|ref|YP_004337955.1| - 0.0012 18.5 0.1 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|327311058|ref|YP_004337955.1| - 0.0014 17.5 0.5 0.007 15.3 0.1 2.3 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|327311058|ref|YP_004337955.1| - 0.0026 17.8 0.7 0.028 14.4 0.5 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.14 gi|327311058|ref|YP_004337955.1| - 0.016 14.3 0.2 0.23 10.5 0.1 2.0 2 0 0 2 2 2 0 GMC oxidoreductase ApbA PF02558.11 gi|327311058|ref|YP_004337955.1| - 0.034 13.6 0.0 0.065 12.6 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|327311058|ref|YP_004337955.1| - 0.073 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 ThiF family DUF3326 PF11805.3 gi|327311058|ref|YP_004337955.1| - 0.13 10.9 0.0 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3326) UDPG_MGDP_dh_N PF03721.9 gi|327311058|ref|YP_004337955.1| - 0.18 11.1 0.3 0.36 10.1 0.2 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Hjc PF01870.13 gi|327311059|ref|YP_004337956.1| - 1.5e-24 85.3 0.1 1.8e-24 85.0 0.1 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|327311059|ref|YP_004337956.1| - 0.031 14.5 0.0 0.048 13.9 0.0 1.5 1 1 0 1 1 1 0 Nuclease-related domain Lactamase_B_3 PF13483.1 gi|327311061|ref|YP_004337958.1| - 3.9e-26 91.7 0.0 5.1e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|327311061|ref|YP_004337958.1| - 2.6e-20 72.7 0.0 3.3e-20 72.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|327311061|ref|YP_004337958.1| - 7.1e-11 42.1 3.9 1.4e-10 41.1 2.7 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily TBP PF00352.16 gi|327311063|ref|YP_004337960.1| - 8.1e-70 230.2 0.0 1.5e-34 117.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|327311063|ref|YP_004337960.1| - 0.0025 17.8 0.0 0.31 11.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Ribosomal_S25 PF03297.10 gi|327311064|ref|YP_004337961.1| - 4.5e-08 33.0 3.0 5.5e-08 32.7 2.1 1.1 1 0 0 1 1 1 1 S25 ribosomal protein GntR PF00392.16 gi|327311064|ref|YP_004337961.1| - 0.0003 20.1 0.0 0.00056 19.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family EAP30 PF04157.11 gi|327311064|ref|YP_004337961.1| - 0.0018 17.4 6.2 0.19 10.8 0.0 2.0 1 1 1 2 2 2 2 EAP30/Vps36 family DDRGK PF09756.4 gi|327311064|ref|YP_004337961.1| - 0.0027 17.1 5.1 0.0055 16.1 3.5 1.4 1 1 0 1 1 1 1 DDRGK domain TrmB PF01978.14 gi|327311064|ref|YP_004337961.1| - 0.01 15.4 0.1 0.02 14.6 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|327311064|ref|YP_004337961.1| - 0.02 15.0 0.2 0.038 14.1 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator ATP-synt_E PF05680.7 gi|327311064|ref|YP_004337961.1| - 0.027 14.4 4.0 0.032 14.1 2.8 1.2 1 0 0 1 1 1 0 ATP synthase E chain DUF1525 PF07511.6 gi|327311064|ref|YP_004337961.1| - 0.044 13.7 2.7 0.052 13.5 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) HTH_Tnp_IS630 PF01710.11 gi|327311064|ref|YP_004337961.1| - 0.061 12.9 0.3 0.099 12.3 0.2 1.5 1 1 0 1 1 1 0 Transposase HTH_20 PF12840.2 gi|327311064|ref|YP_004337961.1| - 0.11 12.2 0.3 0.32 10.8 0.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain ATP-synt_B PF00430.13 gi|327311064|ref|YP_004337961.1| - 0.16 11.8 5.8 0.23 11.2 4.0 1.2 1 0 0 1 1 1 0 ATP synthase B/B' CF(0) WEMBL PF05701.6 gi|327311064|ref|YP_004337961.1| - 0.17 10.2 8.7 0.19 10.1 5.7 1.2 1 1 0 1 1 1 0 Weak chloroplast movement under blue light DUF853 PF05872.7 gi|327311064|ref|YP_004337961.1| - 0.22 9.8 2.3 0.26 9.5 1.6 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) DUF3306 PF11748.3 gi|327311064|ref|YP_004337961.1| - 0.25 12.0 4.7 0.34 11.5 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3306) Bap31 PF05529.7 gi|327311064|ref|YP_004337961.1| - 0.35 10.3 2.4 0.39 10.1 1.6 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like BRF1 PF07741.8 gi|327311064|ref|YP_004337961.1| - 0.47 10.6 4.8 0.68 10.1 3.3 1.3 1 0 0 1 1 1 0 Brf1-like TBP-binding domain DUF4355 PF14265.1 gi|327311064|ref|YP_004337961.1| - 2.5 8.0 12.7 3.8 7.4 8.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) DUF2413 PF10310.4 gi|327311065|ref|YP_004337962.1| - 4.4 6.0 5.6 6.3 5.5 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) HTH_24 PF13412.1 gi|327311066|ref|YP_004337963.1| - 8.8e-10 37.8 0.0 1.2e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.7 gi|327311066|ref|YP_004337963.1| - 6.7e-09 35.7 0.1 8.1e-09 35.5 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_5 PF01022.15 gi|327311066|ref|YP_004337963.1| - 5.5e-07 29.1 0.1 6.8e-07 28.8 0.1 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|327311066|ref|YP_004337963.1| - 9.6e-07 28.2 0.0 1.2e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|327311066|ref|YP_004337963.1| - 3.3e-06 26.7 0.1 4.7e-06 26.2 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|327311066|ref|YP_004337963.1| - 3.4e-06 26.7 0.0 4.8e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|327311066|ref|YP_004337963.1| - 1e-05 25.1 0.0 1.6e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|327311066|ref|YP_004337963.1| - 0.0001 21.7 0.2 0.0003 20.2 0.1 1.7 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_9 PF08221.6 gi|327311066|ref|YP_004337963.1| - 0.00025 20.8 0.0 0.00032 20.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.2 gi|327311066|ref|YP_004337963.1| - 0.00025 20.6 0.0 0.00036 20.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|327311066|ref|YP_004337963.1| - 0.00038 20.7 0.0 0.00048 20.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|327311066|ref|YP_004337963.1| - 0.00047 20.0 0.3 0.00052 19.8 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.7 gi|327311066|ref|YP_004337963.1| - 0.00052 19.8 0.0 0.00064 19.5 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_11 PF08279.7 gi|327311066|ref|YP_004337963.1| - 0.00088 18.8 0.1 0.0011 18.5 0.1 1.2 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|327311066|ref|YP_004337963.1| - 0.0012 18.6 0.1 0.0013 18.5 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_23 PF13384.1 gi|327311066|ref|YP_004337963.1| - 0.0014 18.2 0.0 0.0029 17.2 0.0 1.6 1 1 1 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|327311066|ref|YP_004337963.1| - 0.0016 18.4 0.0 0.0024 17.8 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain Replic_Relax PF13814.1 gi|327311066|ref|YP_004337963.1| - 0.0018 18.1 0.0 0.002 18.0 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation Rrf2 PF02082.15 gi|327311066|ref|YP_004337963.1| - 0.0018 18.3 0.0 0.0024 17.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator DUF977 PF06163.6 gi|327311066|ref|YP_004337963.1| - 0.0021 17.7 0.1 0.0022 17.7 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_29 PF13551.1 gi|327311066|ref|YP_004337963.1| - 0.0037 17.4 0.0 0.0041 17.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|327311066|ref|YP_004337963.1| - 0.0038 16.7 0.2 0.0049 16.3 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Penicillinase_R PF03965.11 gi|327311066|ref|YP_004337963.1| - 0.0045 17.0 0.2 0.0055 16.7 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor RNA_pol_Rpc34 PF05158.7 gi|327311066|ref|YP_004337963.1| - 0.0055 15.9 0.1 0.01 15.0 0.0 1.3 1 1 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_Crp_2 PF13545.1 gi|327311066|ref|YP_004337963.1| - 0.016 15.0 0.1 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_rep_O PF04492.8 gi|327311066|ref|YP_004337963.1| - 0.027 14.6 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage replication protein O z-alpha PF02295.12 gi|327311066|ref|YP_004337963.1| - 0.028 14.1 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_39 PF14090.1 gi|327311066|ref|YP_004337963.1| - 0.033 13.6 0.1 0.061 12.8 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|327311066|ref|YP_004337963.1| - 0.034 13.9 0.1 0.058 13.1 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DUF1013 PF06242.6 gi|327311066|ref|YP_004337963.1| - 0.042 13.8 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1013) HTH_12 PF08461.5 gi|327311066|ref|YP_004337963.1| - 0.044 13.5 0.4 0.17 11.6 0.3 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_34 PF13601.1 gi|327311066|ref|YP_004337963.1| - 0.073 13.1 0.0 0.096 12.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|327311066|ref|YP_004337963.1| - 0.073 13.1 0.1 0.3 11.1 0.1 1.8 1 1 0 1 1 1 0 Mrr N-terminal domain FUR PF01475.14 gi|327311066|ref|YP_004337963.1| - 0.077 12.9 0.1 0.096 12.6 0.1 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Rio2_N PF09202.6 gi|327311066|ref|YP_004337963.1| - 0.085 12.9 0.1 0.1 12.7 0.1 1.2 1 0 0 1 1 1 0 Rio2, N-terminal HTH_Mga PF08280.6 gi|327311066|ref|YP_004337963.1| - 0.093 12.5 0.1 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain ACP_syn_III_C PF08541.5 gi|327311067|ref|YP_004337964.1| - 1.4e-14 53.8 0.0 2.3e-13 49.9 0.0 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|327311067|ref|YP_004337964.1| - 6.9e-05 22.4 0.0 0.00024 20.6 0.0 1.8 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|327311067|ref|YP_004337964.1| - 0.0032 17.0 0.4 0.027 14.1 0.1 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|327311067|ref|YP_004337964.1| - 0.059 12.3 0.0 0.12 11.3 0.0 1.4 2 0 0 2 2 2 0 Thiolase, N-terminal domain DUF35 PF01796.12 gi|327311068|ref|YP_004337965.1| - 2.2e-12 47.0 0.0 3e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|327311068|ref|YP_004337965.1| - 3.6e-12 45.8 1.0 5.8e-12 45.1 0.7 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|327311068|ref|YP_004337965.1| - 0.0024 17.0 4.3 0.0042 16.2 3.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain YhfH PF14149.1 gi|327311068|ref|YP_004337965.1| - 0.0052 16.5 0.3 0.72 9.6 0.0 2.6 2 0 0 2 2 2 1 YhfH-like protein TF_Zn_Ribbon PF08271.7 gi|327311068|ref|YP_004337965.1| - 0.0083 15.4 1.0 0.18 11.1 0.0 2.4 2 0 0 2 2 2 1 TFIIB zinc-binding Mtf2_C PF14061.1 gi|327311068|ref|YP_004337965.1| - 0.01 15.7 1.6 0.11 12.4 0.0 2.2 2 0 0 2 2 2 1 Polycomb-like MTF2 factor 2 zinc_ribbon_5 PF13719.1 gi|327311068|ref|YP_004337965.1| - 0.016 14.7 0.5 3 7.5 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|327311068|ref|YP_004337965.1| - 0.022 14.4 0.4 3.5 7.3 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|327311068|ref|YP_004337965.1| - 0.023 14.4 0.6 0.036 13.8 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|327311068|ref|YP_004337965.1| - 0.031 13.7 5.8 0.066 12.7 4.0 1.6 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|327311068|ref|YP_004337965.1| - 0.035 13.8 2.3 1.3 8.7 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|327311068|ref|YP_004337965.1| - 0.063 12.9 0.2 0.11 12.1 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|327311068|ref|YP_004337965.1| - 0.1 12.3 1.0 0.17 11.6 0.7 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.1 gi|327311068|ref|YP_004337965.1| - 0.11 11.6 0.9 0.4 9.9 0.0 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger TFIIS_C PF01096.13 gi|327311068|ref|YP_004337965.1| - 0.12 12.0 1.1 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2082 PF09855.4 gi|327311068|ref|YP_004337965.1| - 0.24 11.2 1.0 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_Tnp_IS1595 PF12760.2 gi|327311068|ref|YP_004337965.1| - 0.3 10.9 0.2 0.3 10.9 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Med27 PF11571.3 gi|327311068|ref|YP_004337965.1| - 0.51 10.4 1.9 1.6 8.8 1.3 1.8 1 1 0 1 1 1 0 Mediator complex subunit 27 Lar_restr_allev PF14354.1 gi|327311068|ref|YP_004337965.1| - 0.61 10.4 2.8 1.2 9.4 0.2 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-CCHC PF00098.18 gi|327311068|ref|YP_004337965.1| - 0.81 9.7 5.3 11 6.1 0.7 2.3 2 0 0 2 2 2 0 Zinc knuckle Zn-ribbon_8 PF09723.5 gi|327311068|ref|YP_004337965.1| - 0.9 9.5 7.8 15 5.6 4.7 2.6 2 1 0 2 2 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|327311068|ref|YP_004337965.1| - 5.4 6.6 5.8 18 4.9 0.4 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Thiolase_C PF02803.13 gi|327311069|ref|YP_004337966.1| - 2.5e-05 23.6 0.0 5.9e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|327311069|ref|YP_004337966.1| - 0.0023 17.5 0.6 0.32 10.6 0.1 2.9 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|327311069|ref|YP_004337966.1| - 0.076 11.9 1.7 0.15 11.0 0.2 2.1 2 1 0 2 2 2 0 Thiolase, N-terminal domain Cas_APE2256 PF09651.5 gi|327311069|ref|YP_004337966.1| - 0.079 12.6 0.0 0.26 10.9 0.0 1.9 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) Ketoacyl-synt_C PF02801.17 gi|327311069|ref|YP_004337966.1| - 0.41 10.5 5.7 0.64 9.8 0.0 3.0 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain HMG-CoA_red PF00368.13 gi|327311070|ref|YP_004337967.1| - 5.3e-149 495.9 0.5 6.3e-149 495.6 0.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DNA_pol_B PF00136.16 gi|327311072|ref|YP_004337969.1| - 6.1e-77 259.3 0.0 8.5e-77 258.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|327311072|ref|YP_004337969.1| - 5.8e-27 94.3 0.0 9.9e-27 93.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|327311072|ref|YP_004337969.1| - 1.5e-05 24.6 0.0 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|327311072|ref|YP_004337969.1| - 2e-05 24.4 0.0 6e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 RNase_H superfamily DUF348 PF03990.9 gi|327311072|ref|YP_004337969.1| - 0.084 12.4 0.0 0.29 10.7 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF348) DUF2286 PF10051.4 gi|327311073|ref|YP_004337970.1| - 5.6e-41 139.4 1.6 6.1e-41 139.3 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) CDP-OH_P_transf PF01066.16 gi|327311074|ref|YP_004337971.1| - 2e-10 40.8 8.4 5.6e-10 39.4 5.7 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase MtrC PF04211.8 gi|327311074|ref|YP_004337971.1| - 0.95 8.4 6.3 0.27 10.2 0.3 2.1 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit C PepSY_TM PF03929.11 gi|327311074|ref|YP_004337971.1| - 1.3 9.5 5.9 0.51 10.8 1.4 2.3 2 0 0 2 2 2 0 PepSY-associated TM helix Ribosomal_S26e PF01283.14 gi|327311075|ref|YP_004337972.1| - 1.7e-32 111.9 0.5 1.9e-32 111.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.12 gi|327311075|ref|YP_004337972.1| - 0.0071 16.0 0.4 0.63 9.8 0.0 2.4 2 0 0 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger C1_1 PF00130.17 gi|327311075|ref|YP_004337972.1| - 0.036 13.7 0.2 4 7.2 0.0 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RIG-I_C-RD PF11648.3 gi|327311075|ref|YP_004337972.1| - 0.11 12.3 0.1 2.6 7.9 0.0 2.1 2 0 0 2 2 2 0 C-terminal domain of RIG-I Methyltrn_RNA_2 PF04013.7 gi|327311076|ref|YP_004337973.1| - 1.7e-09 37.5 0.0 2.4e-09 37.0 0.0 1.3 1 1 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase tRNA-synt_2b PF00587.20 gi|327311077|ref|YP_004337974.1| - 2.1e-24 86.0 0.4 3.4e-24 85.3 0.3 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|327311077|ref|YP_004337974.1| - 3.1e-23 81.5 0.2 5.6e-23 80.6 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|327311077|ref|YP_004337974.1| - 3e-10 39.8 0.0 6.3e-10 38.8 0.0 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal DUF1381 PF07129.6 gi|327311077|ref|YP_004337974.1| - 0.012 14.9 0.2 6.2 6.2 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1381) GCD14 PF08704.5 gi|327311078|ref|YP_004337975.1| - 2.5e-33 115.6 0.0 3.2e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|327311078|ref|YP_004337975.1| - 2.8e-09 36.8 0.0 3.4e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|327311078|ref|YP_004337975.1| - 1.7e-07 31.3 1.5 7.7e-07 29.1 1.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327311078|ref|YP_004337975.1| - 1.3e-06 28.9 0.0 2.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327311078|ref|YP_004337975.1| - 4.9e-06 26.1 0.0 6.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|327311078|ref|YP_004337975.1| - 0.0041 17.9 0.2 0.019 15.7 0.1 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|327311078|ref|YP_004337975.1| - 0.012 16.1 0.0 0.026 15.0 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.12 gi|327311078|ref|YP_004337975.1| - 0.018 14.1 0.0 0.03 13.3 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_23 PF13489.1 gi|327311078|ref|YP_004337975.1| - 0.06 13.0 0.0 0.39 10.4 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.21 gi|327311078|ref|YP_004337975.1| - 0.061 12.8 0.1 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Ubie_methyltran PF01209.13 gi|327311078|ref|YP_004337975.1| - 0.061 12.4 0.0 0.11 11.5 0.0 1.4 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|327311078|ref|YP_004337975.1| - 0.076 12.3 0.0 0.53 9.6 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase small domain CxxCxxCC PF03692.10 gi|327311079|ref|YP_004337976.1| - 9.7e-05 22.7 0.0 0.00015 22.1 0.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ABC_tran PF00005.22 gi|327311080|ref|YP_004337977.1| - 8.2e-32 110.3 0.0 1.1e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|327311080|ref|YP_004337977.1| - 3.5e-21 75.3 1.7 3.5e-21 75.3 1.1 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|327311080|ref|YP_004337977.1| - 8.1e-09 35.8 0.2 1.2e-05 25.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327311080|ref|YP_004337977.1| - 0.00072 19.5 0.1 0.0016 18.4 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|327311080|ref|YP_004337977.1| - 0.00097 18.8 0.1 0.0017 18.1 0.1 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|327311080|ref|YP_004337977.1| - 0.0011 18.2 0.1 0.027 13.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|327311080|ref|YP_004337977.1| - 0.0017 18.5 0.6 0.0062 16.6 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|327311080|ref|YP_004337977.1| - 0.0018 17.7 0.2 0.0032 16.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|327311080|ref|YP_004337977.1| - 0.004 16.6 0.0 0.007 15.8 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family NACHT PF05729.7 gi|327311080|ref|YP_004337977.1| - 0.0051 16.4 0.4 0.018 14.7 0.3 1.8 1 1 1 2 2 2 1 NACHT domain Mg_chelatase PF01078.16 gi|327311080|ref|YP_004337977.1| - 0.0076 15.4 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|327311080|ref|YP_004337977.1| - 0.012 14.1 1.6 0.082 11.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|327311080|ref|YP_004337977.1| - 0.015 15.5 0.4 0.036 14.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|327311080|ref|YP_004337977.1| - 0.022 14.6 0.2 0.038 13.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|327311080|ref|YP_004337977.1| - 0.045 13.1 0.0 0.085 12.2 0.0 1.6 1 1 1 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|327311080|ref|YP_004337977.1| - 0.049 13.0 0.6 0.15 11.4 0.1 1.9 2 1 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|327311080|ref|YP_004337977.1| - 0.08 11.8 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|327311080|ref|YP_004337977.1| - 0.085 12.3 0.0 0.22 11.0 0.0 1.6 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.1 gi|327311080|ref|YP_004337977.1| - 0.096 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|327311080|ref|YP_004337977.1| - 0.097 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KaiC PF06745.8 gi|327311080|ref|YP_004337977.1| - 0.13 11.3 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 KaiC ABC_tran PF00005.22 gi|327311081|ref|YP_004337978.1| - 3.4e-32 111.5 0.0 4.7e-32 111.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|327311081|ref|YP_004337978.1| - 2.1e-19 69.6 0.2 3.6e-19 68.8 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|327311081|ref|YP_004337978.1| - 3.4e-13 50.2 0.0 3.6e-09 37.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|327311081|ref|YP_004337978.1| - 5.1e-07 29.1 0.3 0.0019 17.4 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|327311081|ref|YP_004337978.1| - 2.6e-05 23.6 0.0 4.7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|327311081|ref|YP_004337978.1| - 0.0001 21.0 0.2 0.02 13.4 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|327311081|ref|YP_004337978.1| - 0.00011 22.3 0.9 0.0032 17.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327311081|ref|YP_004337978.1| - 0.00013 22.0 0.0 0.00035 20.6 0.0 1.9 2 1 0 2 2 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|327311081|ref|YP_004337978.1| - 0.00017 21.0 0.2 0.027 13.8 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.7 gi|327311081|ref|YP_004337978.1| - 0.00064 19.4 0.3 0.002 17.7 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_23 PF13476.1 gi|327311081|ref|YP_004337978.1| - 0.00092 19.5 0.0 0.0014 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|327311081|ref|YP_004337978.1| - 0.0024 17.7 0.1 0.0048 16.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 Sigma54_activ_2 PF14532.1 gi|327311081|ref|YP_004337978.1| - 0.0029 17.6 0.0 0.14 12.2 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_10 PF12846.2 gi|327311081|ref|YP_004337978.1| - 0.0035 16.8 0.1 0.016 14.6 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_30 PF13604.1 gi|327311081|ref|YP_004337978.1| - 0.004 16.7 0.1 0.023 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|327311081|ref|YP_004337978.1| - 0.0056 16.4 0.0 0.019 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|327311081|ref|YP_004337978.1| - 0.0065 17.2 0.0 0.018 15.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|327311081|ref|YP_004337978.1| - 0.0075 15.4 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|327311081|ref|YP_004337978.1| - 0.0076 16.5 0.0 0.02 15.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain MMR_HSR1 PF01926.18 gi|327311081|ref|YP_004337978.1| - 0.0099 15.8 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|327311081|ref|YP_004337978.1| - 0.01 15.2 0.2 0.029 13.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|327311081|ref|YP_004337978.1| - 0.012 14.7 0.0 0.97 8.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|327311081|ref|YP_004337978.1| - 0.013 14.3 0.1 0.025 13.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain T2SE PF00437.15 gi|327311081|ref|YP_004337978.1| - 0.017 14.0 0.0 0.026 13.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|327311081|ref|YP_004337978.1| - 0.019 14.8 0.0 0.074 12.9 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|327311081|ref|YP_004337978.1| - 0.02 14.5 0.1 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|327311081|ref|YP_004337978.1| - 0.029 13.8 0.1 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DEAD PF00270.24 gi|327311081|ref|YP_004337978.1| - 0.029 13.8 0.0 0.056 12.9 0.0 1.3 1 1 0 1 1 1 0 DEAD/DEAH box helicase KKLCAg1 PF15204.1 gi|327311081|ref|YP_004337978.1| - 0.031 14.3 0.0 0.073 13.1 0.0 1.5 1 0 0 1 1 1 0 Kita-kyushu lung cancer antigen 1 AAA_19 PF13245.1 gi|327311081|ref|YP_004337978.1| - 0.038 13.7 0.0 0.097 12.4 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain Sigma54_activat PF00158.21 gi|327311081|ref|YP_004337978.1| - 0.048 13.1 0.3 0.14 11.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|327311081|ref|YP_004337978.1| - 0.061 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase APS_kinase PF01583.15 gi|327311081|ref|YP_004337978.1| - 0.061 12.9 0.1 0.48 10.0 0.0 2.3 2 1 1 3 3 3 0 Adenylylsulphate kinase Mg_chelatase PF01078.16 gi|327311081|ref|YP_004337978.1| - 0.087 11.9 0.0 2.1 7.4 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|327311081|ref|YP_004337978.1| - 0.094 11.8 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|327311081|ref|YP_004337978.1| - 0.12 12.5 0.0 0.46 10.6 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|327311081|ref|YP_004337978.1| - 0.12 12.1 0.0 0.57 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|327311081|ref|YP_004337978.1| - 0.14 11.6 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Dynamin_N PF00350.18 gi|327311081|ref|YP_004337978.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Dynamin family BPD_transp_1 PF00528.17 gi|327311082|ref|YP_004337979.1| - 1.5e-21 76.7 19.5 1.5e-21 76.7 13.5 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2669 PF10876.3 gi|327311082|ref|YP_004337979.1| - 0.15 11.7 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2669) BPD_transp_1 PF00528.17 gi|327311083|ref|YP_004337980.1| - 2.6e-24 85.7 16.4 2.6e-24 85.7 11.3 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|327311084|ref|YP_004337981.1| - 1.4e-13 50.3 6.9 1.6e-09 37.0 0.5 4.2 3 2 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle Qn_am_d_aIII PF09099.5 gi|327311084|ref|YP_004337981.1| - 0.011 16.0 1.4 0.029 14.6 1.0 1.7 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III FlgD_ig PF13860.1 gi|327311084|ref|YP_004337981.1| - 0.038 13.7 0.1 0.09 12.5 0.1 1.5 1 0 0 1 1 1 0 FlgD Ig-like domain Peptidase_M56 PF05569.6 gi|327311085|ref|YP_004337982.1| - 0.0071 15.3 0.6 0.01 14.8 0.4 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 zf-DHHC PF01529.15 gi|327311085|ref|YP_004337982.1| - 0.16 11.3 1.9 0.24 10.7 1.3 1.3 1 0 0 1 1 1 0 DHHC palmitoyltransferase TrkA_C PF02080.16 gi|327311086|ref|YP_004337983.1| - 4.3e-07 29.4 0.1 1.1e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 TrkA-C domain TnpW PF14202.1 gi|327311087|ref|YP_004337984.1| - 0.14 11.7 0.2 0.74 9.4 0.1 2.1 2 0 0 2 2 2 0 Transposon-encoded protein TnpW NTP_transf_2 PF01909.18 gi|327311088|ref|YP_004337985.1| - 1e-08 35.3 0.0 1.3e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|327311088|ref|YP_004337985.1| - 0.035 13.7 0.0 0.044 13.4 0.0 1.4 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|327311089|ref|YP_004337986.1| - 2e-28 98.6 0.8 2.2e-28 98.4 0.6 1.0 1 0 0 1 1 1 1 HEPN domain TPR_2 PF07719.12 gi|327311089|ref|YP_004337986.1| - 9 6.4 7.0 7.7 6.6 2.6 2.5 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF72 PF01904.13 gi|327311090|ref|YP_004337987.1| - 2e-55 188.0 0.0 2.3e-55 187.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF995 PF06191.7 gi|327311090|ref|YP_004337987.1| - 0.089 12.1 0.8 0.73 9.1 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF995) Aldo_ket_red PF00248.16 gi|327311091|ref|YP_004337988.1| - 6.8e-76 254.7 0.0 7.6e-76 254.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family OTCace PF00185.19 gi|327311092|ref|YP_004337989.1| - 2.4e-54 183.5 0.0 6.8e-51 172.2 0.0 2.1 2 0 0 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|327311092|ref|YP_004337989.1| - 5.9e-44 149.1 0.0 8.6e-44 148.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YjzC PF14168.1 gi|327311092|ref|YP_004337989.1| - 0.083 12.8 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 YjzC-like protein Peripla_BP_6 PF13458.1 gi|327311094|ref|YP_004337991.1| - 2.5e-50 171.7 1.0 2.9e-50 171.5 0.7 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|327311094|ref|YP_004337991.1| - 6.4e-25 87.6 0.0 9.2e-25 87.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|327311094|ref|YP_004337991.1| - 2.4e-05 23.2 0.1 0.00011 21.1 0.0 1.9 1 1 0 1 1 1 1 Receptor family ligand binding region BPD_transp_2 PF02653.11 gi|327311095|ref|YP_004337992.1| - 3e-28 98.5 41.8 3.4e-28 98.3 29.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component YbjM PF11045.3 gi|327311095|ref|YP_004337992.1| - 5.7 6.7 9.3 1 9.1 1.5 2.6 3 0 0 3 3 3 0 Putative inner membrane protein of Enterobacteriaceae BPD_transp_2 PF02653.11 gi|327311096|ref|YP_004337993.1| - 2.5e-19 69.3 30.5 2.5e-19 69.3 21.1 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2929 PF11151.3 gi|327311096|ref|YP_004337993.1| - 0.028 14.4 0.7 0.028 14.4 0.5 3.3 5 0 0 5 5 5 0 Protein of unknown function (DUF2929) SKG6 PF08693.5 gi|327311096|ref|YP_004337993.1| - 0.14 11.5 2.1 0.23 10.8 0.1 2.5 2 0 0 2 2 2 0 Transmembrane alpha-helix domain ABC_tran PF00005.22 gi|327311097|ref|YP_004337994.1| - 9e-31 106.9 0.0 1.2e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327311097|ref|YP_004337994.1| - 3.1e-12 47.0 0.4 2e-05 24.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|327311097|ref|YP_004337994.1| - 2.7e-07 30.0 0.5 0.00065 18.9 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|327311097|ref|YP_004337994.1| - 8.1e-06 25.2 0.1 1.4e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|327311097|ref|YP_004337994.1| - 2.7e-05 24.5 0.1 4.2e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327311097|ref|YP_004337994.1| - 0.00023 21.1 1.4 0.0027 17.7 1.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|327311097|ref|YP_004337994.1| - 0.00044 19.8 0.3 0.0017 18.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|327311097|ref|YP_004337994.1| - 0.00047 19.8 0.8 0.0015 18.2 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|327311097|ref|YP_004337994.1| - 0.00062 20.5 0.3 0.0011 19.8 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|327311097|ref|YP_004337994.1| - 0.00098 19.3 0.2 0.0049 17.0 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|327311097|ref|YP_004337994.1| - 0.0014 17.5 0.3 0.022 13.6 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|327311097|ref|YP_004337994.1| - 0.0017 18.2 0.6 0.0021 17.9 0.4 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|327311097|ref|YP_004337994.1| - 0.0017 18.0 0.1 0.0057 16.3 0.1 1.9 1 0 0 1 1 1 1 Part of AAA domain DUF258 PF03193.11 gi|327311097|ref|YP_004337994.1| - 0.0027 16.9 0.1 0.0053 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|327311097|ref|YP_004337994.1| - 0.0049 17.0 0.6 0.071 13.2 0.4 2.2 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|327311097|ref|YP_004337994.1| - 0.0059 16.0 0.3 0.043 13.2 0.1 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|327311097|ref|YP_004337994.1| - 0.007 16.2 0.3 0.026 14.3 0.1 1.8 2 0 0 2 2 2 1 Dynamin family NACHT PF05729.7 gi|327311097|ref|YP_004337994.1| - 0.007 16.0 0.0 0.046 13.3 0.0 2.1 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.1 gi|327311097|ref|YP_004337994.1| - 0.0097 15.7 0.1 0.015 15.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|327311097|ref|YP_004337994.1| - 0.01 15.8 0.9 0.037 14.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|327311097|ref|YP_004337994.1| - 0.013 14.9 0.2 0.028 13.8 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain Zeta_toxin PF06414.7 gi|327311097|ref|YP_004337994.1| - 0.016 14.3 0.0 0.034 13.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_15 PF13175.1 gi|327311097|ref|YP_004337994.1| - 0.017 14.1 0.0 0.21 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.17 gi|327311097|ref|YP_004337994.1| - 0.02 14.3 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF3584 PF12128.3 gi|327311097|ref|YP_004337994.1| - 0.02 12.2 0.1 0.025 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FtsK_SpoIIIE PF01580.13 gi|327311097|ref|YP_004337994.1| - 0.022 14.2 0.7 0.072 12.5 0.1 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family FeoB_N PF02421.13 gi|327311097|ref|YP_004337994.1| - 0.023 13.9 0.1 0.04 13.2 0.1 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B Miro PF08477.8 gi|327311097|ref|YP_004337994.1| - 0.024 15.1 0.2 0.063 13.7 0.1 1.7 2 0 0 2 2 1 0 Miro-like protein ATP_bind_1 PF03029.12 gi|327311097|ref|YP_004337994.1| - 0.03 13.8 0.3 0.049 13.1 0.1 1.5 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.16 gi|327311097|ref|YP_004337994.1| - 0.038 13.1 0.0 0.069 12.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|327311097|ref|YP_004337994.1| - 0.049 13.2 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|327311097|ref|YP_004337994.1| - 0.05 13.0 0.7 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|327311097|ref|YP_004337994.1| - 0.085 12.2 0.1 0.65 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|327311097|ref|YP_004337994.1| - 0.091 12.4 0.9 0.21 11.2 0.1 1.9 2 0 0 2 2 2 0 NTPase ATP-synt_ab PF00006.20 gi|327311097|ref|YP_004337994.1| - 0.1 12.0 0.2 0.12 11.9 0.1 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Arch_ATPase PF01637.13 gi|327311097|ref|YP_004337994.1| - 0.13 11.9 0.1 0.35 10.5 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase AAA_14 PF13173.1 gi|327311097|ref|YP_004337994.1| - 0.15 11.9 0.2 1.1 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|327311097|ref|YP_004337994.1| - 0.15 10.5 1.2 1 7.8 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_5 PF07728.9 gi|327311097|ref|YP_004337994.1| - 0.16 11.6 0.4 4.2 7.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|327311098|ref|YP_004337995.1| - 4.9e-29 101.3 0.0 6.6e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327311098|ref|YP_004337995.1| - 4.6e-11 43.2 0.0 7.6e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|327311098|ref|YP_004337995.1| - 1.1e-05 24.7 0.2 0.096 11.9 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|327311098|ref|YP_004337995.1| - 5e-05 22.7 0.0 0.00011 21.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|327311098|ref|YP_004337995.1| - 0.00011 22.6 0.0 0.00014 22.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327311098|ref|YP_004337995.1| - 0.0018 18.2 0.1 0.0028 17.6 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|327311098|ref|YP_004337995.1| - 0.0027 17.9 0.3 0.0093 16.1 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|327311098|ref|YP_004337995.1| - 0.0031 16.9 0.0 0.004 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|327311098|ref|YP_004337995.1| - 0.0042 17.9 0.0 0.022 15.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|327311098|ref|YP_004337995.1| - 0.0042 17.2 0.5 0.014 15.5 0.3 1.9 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|327311098|ref|YP_004337995.1| - 0.0073 15.4 0.1 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin SRP54 PF00448.17 gi|327311098|ref|YP_004337995.1| - 0.012 15.0 0.1 0.02 14.3 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|327311098|ref|YP_004337995.1| - 0.022 14.6 0.0 0.045 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|327311098|ref|YP_004337995.1| - 0.025 14.1 0.1 0.046 13.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|327311098|ref|YP_004337995.1| - 0.025 14.2 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|327311098|ref|YP_004337995.1| - 0.039 13.8 0.2 0.69 9.8 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.10 gi|327311098|ref|YP_004337995.1| - 0.039 13.6 0.1 0.3 10.7 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.1 gi|327311098|ref|YP_004337995.1| - 0.043 13.7 0.1 0.078 12.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|327311098|ref|YP_004337995.1| - 0.055 13.2 0.3 0.15 11.8 0.1 1.8 2 0 0 2 2 2 0 Part of AAA domain AAA_10 PF12846.2 gi|327311098|ref|YP_004337995.1| - 0.087 12.2 0.2 0.17 11.2 0.1 1.5 2 0 0 2 2 2 0 AAA-like domain Miro PF08477.8 gi|327311098|ref|YP_004337995.1| - 0.17 12.4 0.1 0.5 10.8 0.0 1.7 2 0 0 2 2 2 0 Miro-like protein IF-2B PF01008.12 gi|327311099|ref|YP_004337996.1| - 5.9e-07 28.7 0.0 3.8e-06 26.1 0.0 2.1 1 1 0 1 1 1 1 Initiation factor 2 subunit family RHH_2 PF03693.9 gi|327311099|ref|YP_004337996.1| - 0.16 12.1 0.5 0.33 11.1 0.4 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) NrfD PF03916.9 gi|327311100|ref|YP_004337997.1| - 7.5e-18 64.9 26.8 7.5e-18 64.9 18.6 1.6 2 0 0 2 2 2 1 Polysulphide reductase, NrfD Fer4_11 PF13247.1 gi|327311101|ref|YP_004337998.1| - 4.1e-24 84.3 12.6 1.5e-23 82.5 6.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327311101|ref|YP_004337998.1| - 2.9e-16 59.5 24.5 6.5e-09 36.0 4.7 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327311101|ref|YP_004337998.1| - 2.7e-15 55.4 34.3 4.7e-07 29.4 1.7 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|327311101|ref|YP_004337998.1| - 4.9e-15 54.4 33.7 2e-08 33.4 1.8 4.7 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|327311101|ref|YP_004337998.1| - 1.9e-11 43.1 34.9 4.1e-06 26.3 1.1 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|327311101|ref|YP_004337998.1| - 5e-11 42.6 27.0 2.9e-05 24.2 7.1 3.2 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327311101|ref|YP_004337998.1| - 6.1e-11 41.9 27.8 4.4e-05 23.2 8.5 3.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|327311101|ref|YP_004337998.1| - 1.4e-08 34.3 34.0 0.00046 20.2 1.7 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|327311101|ref|YP_004337998.1| - 2.5e-07 30.6 23.8 4.9e-05 23.2 4.5 3.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327311101|ref|YP_004337998.1| - 4e-07 30.1 47.0 0.011 16.2 5.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|327311101|ref|YP_004337998.1| - 1.1e-06 28.8 22.6 0.011 16.0 6.5 3.8 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327311101|ref|YP_004337998.1| - 4.3e-05 24.1 27.3 0.037 14.7 7.5 4.0 1 1 4 5 5 5 3 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|327311101|ref|YP_004337998.1| - 7.4e-05 23.0 20.2 0.074 13.4 0.8 4.2 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327311101|ref|YP_004337998.1| - 0.0016 18.2 33.5 0.055 13.3 8.6 3.7 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|327311101|ref|YP_004337998.1| - 0.016 15.7 23.3 0.049 14.2 0.9 3.8 3 1 0 3 3 3 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|327311102|ref|YP_004337999.1| - 8.3e-51 173.0 0.0 2.6e-50 171.4 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|327311102|ref|YP_004337999.1| - 1.5e-12 47.3 0.0 4.2e-12 45.8 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|327311102|ref|YP_004337999.1| - 0.0032 17.3 0.0 0.016 15.1 0.0 2.0 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Molybdop_Fe4S4 PF04879.11 gi|327311102|ref|YP_004337999.1| - 0.0093 15.7 0.1 0.025 14.4 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain FAD-oxidase_C PF02913.14 gi|327311102|ref|YP_004337999.1| - 0.13 11.6 0.0 0.45 9.7 0.0 1.9 2 0 0 2 2 2 0 FAD linked oxidases, C-terminal domain PMT_2 PF13231.1 gi|327311103|ref|YP_004338000.1| - 2.3e-07 30.8 11.8 2.3e-07 30.8 8.2 3.4 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|327311103|ref|YP_004338000.1| - 4e-07 29.6 5.2 4e-07 29.6 3.6 3.7 2 1 1 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2029 PF09594.5 gi|327311103|ref|YP_004338000.1| - 0.005 16.3 43.0 0.023 14.2 26.8 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF2029) DUF2116 PF09889.4 gi|327311103|ref|YP_004338000.1| - 0.15 11.8 0.0 0.45 10.3 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) MitoNEET_N PF10660.4 gi|327311103|ref|YP_004338000.1| - 0.37 10.6 3.6 2 8.3 2.5 2.3 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus Sugar_tr PF00083.19 gi|327311104|ref|YP_004338001.1| - 4.3e-53 180.4 16.0 5.5e-53 180.1 11.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|327311104|ref|YP_004338001.1| - 2.6e-27 95.4 34.0 2.6e-27 95.4 23.6 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Oxidored_q6 PF01058.17 gi|327311105|ref|YP_004338002.1| - 2.1e-25 88.8 0.1 3e-25 88.3 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Glyco_transf_43 PF03360.11 gi|327311105|ref|YP_004338002.1| - 0.016 14.7 0.3 0.022 14.3 0.2 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 43 Complex1_30kDa PF00329.14 gi|327311106|ref|YP_004338003.1| - 1.8e-26 92.3 0.0 2.3e-26 91.9 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LCE PF14672.1 gi|327311106|ref|YP_004338003.1| - 0.011 16.1 0.1 0.018 15.5 0.1 1.4 1 0 0 1 1 1 0 Late cornified envelope NTP_transf_2 PF01909.18 gi|327311107|ref|YP_004338004.1| - 3.5e-12 46.4 0.0 4.5e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|327311107|ref|YP_004338004.1| - 0.071 12.7 0.0 0.1 12.2 0.0 1.5 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 PhnA_Zn_Ribbon PF08274.7 gi|327311109|ref|YP_004338006.1| - 0.089 12.5 2.7 0.27 11.0 1.9 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Ribosomal_S14 PF00253.16 gi|327311109|ref|YP_004338006.1| - 0.094 12.1 0.4 0.23 10.8 0.2 1.6 1 1 0 1 1 1 0 Ribosomal protein S14p/S29e DUF2318 PF10080.4 gi|327311109|ref|YP_004338006.1| - 0.13 12.0 2.0 0.14 11.9 1.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Rad50_zn_hook PF04423.9 gi|327311109|ref|YP_004338006.1| - 0.61 9.5 2.5 1.2 8.6 0.3 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif CbiQ PF02361.11 gi|327311110|ref|YP_004338007.1| - 5.3e-22 78.5 10.4 1e-21 77.5 7.2 1.5 1 0 0 1 1 1 1 Cobalt transport protein PBP PF01161.15 gi|327311111|ref|YP_004338008.1| - 2.8e-35 121.3 0.0 3.3e-35 121.0 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ABC_tran PF00005.22 gi|327311112|ref|YP_004338009.1| - 4.1e-57 192.3 0.0 2.6e-29 102.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|327311112|ref|YP_004338009.1| - 8.6e-23 81.7 0.3 6.5e-06 26.3 0.0 4.1 4 0 0 4 4 4 4 AAA domain SMC_N PF02463.14 gi|327311112|ref|YP_004338009.1| - 3.1e-16 59.2 2.2 7.5e-06 25.3 0.1 3.9 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|327311112|ref|YP_004338009.1| - 1e-11 44.1 0.1 8e-05 22.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|327311112|ref|YP_004338009.1| - 8.8e-09 35.0 1.5 0.014 14.7 0.0 4.0 4 0 0 4 4 4 2 AAA domain AAA_22 PF13401.1 gi|327311112|ref|YP_004338009.1| - 1.2e-07 31.9 4.9 0.0042 17.2 0.2 3.9 2 2 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|327311112|ref|YP_004338009.1| - 1.7e-07 31.0 0.6 0.1 12.4 0.0 4.1 3 2 0 3 3 2 2 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|327311112|ref|YP_004338009.1| - 4.9e-07 29.4 6.3 0.22 10.9 0.1 4.1 4 0 0 4 4 4 2 AAA-like domain AAA_23 PF13476.1 gi|327311112|ref|YP_004338009.1| - 6.5e-07 29.8 0.0 0.025 14.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|327311112|ref|YP_004338009.1| - 2.3e-06 27.7 3.4 0.01 15.8 0.1 3.0 2 2 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|327311112|ref|YP_004338009.1| - 2.4e-06 26.8 0.1 0.0035 16.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 T2SE PF00437.15 gi|327311112|ref|YP_004338009.1| - 3.3e-06 26.2 0.1 0.016 14.1 0.0 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|327311112|ref|YP_004338009.1| - 8e-06 25.7 0.6 0.0056 16.6 0.0 2.9 3 0 0 3 3 3 1 50S ribosome-binding GTPase MobB PF03205.9 gi|327311112|ref|YP_004338009.1| - 8.6e-06 25.4 0.2 0.089 12.4 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|327311112|ref|YP_004338009.1| - 2e-05 24.2 0.4 0.3 10.6 0.0 3.1 3 1 0 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|327311112|ref|YP_004338009.1| - 2.1e-05 25.3 2.0 0.046 14.5 0.1 3.0 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|327311112|ref|YP_004338009.1| - 3e-05 23.9 0.1 0.23 11.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|327311112|ref|YP_004338009.1| - 4.9e-05 22.5 0.1 0.1 11.6 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_14 PF13173.1 gi|327311112|ref|YP_004338009.1| - 5.3e-05 23.1 0.1 0.22 11.4 0.0 3.8 4 0 0 4 4 4 1 AAA domain AAA_5 PF07728.9 gi|327311112|ref|YP_004338009.1| - 6.6e-05 22.6 1.0 1 9.0 0.0 3.8 4 0 0 4 4 3 2 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.4 gi|327311112|ref|YP_004338009.1| - 6.7e-05 21.6 0.6 0.8 8.2 0.0 3.3 3 0 0 3 3 3 2 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|327311112|ref|YP_004338009.1| - 0.00015 21.4 0.3 1 9.1 0.1 3.0 2 0 0 2 2 2 2 Part of AAA domain Mg_chelatase PF01078.16 gi|327311112|ref|YP_004338009.1| - 0.00018 20.7 0.0 0.025 13.7 0.0 2.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|327311112|ref|YP_004338009.1| - 0.00022 20.7 0.0 0.026 14.0 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family NB-ARC PF00931.17 gi|327311112|ref|YP_004338009.1| - 0.00023 20.1 0.6 0.17 10.7 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain NACHT PF05729.7 gi|327311112|ref|YP_004338009.1| - 0.00037 20.1 0.4 0.9 9.1 0.0 2.6 2 0 0 2 2 2 2 NACHT domain AAA_15 PF13175.1 gi|327311112|ref|YP_004338009.1| - 0.0005 19.2 0.0 8.4 5.3 0.0 3.9 4 0 0 4 4 4 0 AAA ATPase domain AAA PF00004.24 gi|327311112|ref|YP_004338009.1| - 0.00051 20.2 1.3 2.9 8.0 0.0 4.0 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|327311112|ref|YP_004338009.1| - 0.00059 20.3 0.2 1.8 9.1 0.0 2.6 2 0 0 2 2 2 2 Miro-like protein RNA_helicase PF00910.17 gi|327311112|ref|YP_004338009.1| - 0.00064 19.8 0.2 1.2 9.3 0.1 2.4 2 0 0 2 2 2 2 RNA helicase IstB_IS21 PF01695.12 gi|327311112|ref|YP_004338009.1| - 0.0026 17.2 2.2 5.5 6.3 0.0 3.9 4 0 0 4 4 4 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|327311112|ref|YP_004338009.1| - 0.0041 16.8 1.2 0.74 9.4 0.1 2.8 3 0 0 3 3 2 1 Archaeal ATPase ATP_bind_1 PF03029.12 gi|327311112|ref|YP_004338009.1| - 0.0042 16.6 0.2 2.3 7.6 0.1 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|327311112|ref|YP_004338009.1| - 0.0058 16.4 1.6 0.42 10.4 0.1 2.6 3 0 0 3 3 2 1 Dynamin family DEAD PF00270.24 gi|327311112|ref|YP_004338009.1| - 0.0073 15.8 0.0 8.9 5.7 0.0 3.0 2 2 0 3 3 3 0 DEAD/DEAH box helicase DUF87 PF01935.12 gi|327311112|ref|YP_004338009.1| - 0.0079 16.0 1.2 1.9 8.2 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 SRP54 PF00448.17 gi|327311112|ref|YP_004338009.1| - 0.011 15.2 1.6 3.8 6.8 0.1 3.1 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain cobW PF02492.14 gi|327311112|ref|YP_004338009.1| - 0.012 15.0 1.3 1.2 8.5 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|327311112|ref|YP_004338009.1| - 0.014 14.9 0.2 1.9 8.1 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 KaiC PF06745.8 gi|327311112|ref|YP_004338009.1| - 0.021 13.9 3.3 4.7 6.2 0.0 3.4 4 0 0 4 4 4 0 KaiC PduV-EutP PF10662.4 gi|327311112|ref|YP_004338009.1| - 0.022 14.2 0.2 0.99 8.8 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Septin PF00735.13 gi|327311112|ref|YP_004338009.1| - 0.029 13.3 0.5 0.51 9.3 0.0 2.1 2 0 0 2 2 2 0 Septin AIG1 PF04548.11 gi|327311112|ref|YP_004338009.1| - 0.042 12.9 0.2 0.042 12.9 0.1 1.8 2 0 0 2 2 1 0 AIG1 family AAA_28 PF13521.1 gi|327311112|ref|YP_004338009.1| - 0.047 13.6 1.3 10 6.0 0.0 3.3 3 0 0 3 3 3 0 AAA domain ArgK PF03308.11 gi|327311112|ref|YP_004338009.1| - 0.067 11.9 0.7 7.8 5.1 0.0 2.2 2 0 0 2 2 2 0 ArgK protein DUF815 PF05673.8 gi|327311112|ref|YP_004338009.1| - 0.086 11.7 0.0 0.99 8.2 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF815) G-alpha PF00503.15 gi|327311112|ref|YP_004338009.1| - 0.11 11.2 0.0 4 6.0 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit IMCp PF12314.3 gi|327311112|ref|YP_004338009.1| - 0.11 12.6 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 Inner membrane complex protein AAA_18 PF13238.1 gi|327311112|ref|YP_004338009.1| - 0.13 12.5 5.2 4.3 7.6 0.1 3.3 4 0 0 4 4 2 0 AAA domain PhoH PF02562.11 gi|327311112|ref|YP_004338009.1| - 0.13 11.4 0.4 15 4.7 0.0 3.0 3 0 0 3 3 3 0 PhoH-like protein NTPase_1 PF03266.10 gi|327311112|ref|YP_004338009.1| - 0.15 11.7 0.7 7 6.3 0.1 2.6 2 0 0 2 2 2 0 NTPase APS_kinase PF01583.15 gi|327311112|ref|YP_004338009.1| - 0.17 11.5 0.8 15 5.2 0.0 2.8 3 0 0 3 3 2 0 Adenylylsulphate kinase AAA_24 PF13479.1 gi|327311112|ref|YP_004338009.1| - 0.27 10.7 1.3 35 3.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain FeoB_N PF02421.13 gi|327311112|ref|YP_004338009.1| - 0.35 10.1 3.1 3.1 7.0 0.1 2.5 3 0 0 3 3 2 0 Ferrous iron transport protein B FixQ PF05545.6 gi|327311113|ref|YP_004338010.1| - 0.022 14.3 0.5 0.12 12.0 0.4 2.3 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ NADH-u_ox-rdase PF10785.4 gi|327311113|ref|YP_004338010.1| - 0.3 11.3 0.1 0.3 11.3 0.1 2.7 2 1 1 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Radical_SAM PF04055.16 gi|327311114|ref|YP_004338011.1| - 2.1e-11 44.2 0.0 5e-11 43.0 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|327311114|ref|YP_004338011.1| - 1.6e-05 25.0 0.0 3.3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|327311114|ref|YP_004338011.1| - 0.00041 20.6 0.0 0.001 19.3 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|327311114|ref|YP_004338011.1| - 0.00077 19.4 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HEPN PF05168.9 gi|327311115|ref|YP_004338012.1| - 5.2e-28 97.3 0.1 6.6e-28 96.9 0.1 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|327311116|ref|YP_004338013.1| - 3.4e-12 46.5 0.1 4.3e-12 46.2 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|327311116|ref|YP_004338013.1| - 0.0019 17.8 0.0 0.31 10.6 0.0 2.2 1 1 1 2 2 2 2 Putative nucleotidyltransferase DUF294 DNA_pol_B_palm PF14792.1 gi|327311116|ref|YP_004338013.1| - 0.0082 16.1 0.0 0.011 15.8 0.0 1.3 1 1 0 1 1 1 1 DNA polymerase beta palm Cation_efflux PF01545.16 gi|327311117|ref|YP_004338014.1| - 1.5e-36 125.9 4.0 1.7e-36 125.7 2.8 1.0 1 0 0 1 1 1 1 Cation efflux family DUF3800 PF12686.2 gi|327311118|ref|YP_004338015.1| - 9.2e-08 32.0 0.0 0.0002 21.1 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3800) HTH_20 PF12840.2 gi|327311119|ref|YP_004338016.1| - 0.00042 20.0 0.0 0.00082 19.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|327311119|ref|YP_004338016.1| - 0.0091 15.6 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|327311119|ref|YP_004338016.1| - 0.039 13.5 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|327311119|ref|YP_004338016.1| - 0.068 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MSP1_C PF07462.6 gi|327311120|ref|YP_004338017.1| - 0.12 10.6 0.0 0.12 10.6 0.0 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus Molybdopterin PF00384.17 gi|327311121|ref|YP_004338018.1| - 1.4e-42 145.9 0.0 3e-41 141.5 0.0 2.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|327311121|ref|YP_004338018.1| - 7.1e-13 48.1 0.1 1.6e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.16 gi|327311121|ref|YP_004338018.1| - 1.4e-11 44.1 0.0 3.3e-11 42.9 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.4 gi|327311121|ref|YP_004338018.1| - 0.17 11.9 1.9 0.65 10.1 1.3 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.1 gi|327311122|ref|YP_004338019.1| - 3.6e-29 100.5 14.1 5.2e-28 96.8 6.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|327311122|ref|YP_004338019.1| - 6e-16 58.4 22.3 4.6e-08 33.2 7.4 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327311122|ref|YP_004338019.1| - 4.3e-15 55.8 61.1 1.6e-06 28.3 8.4 3.6 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327311122|ref|YP_004338019.1| - 2.1e-14 53.0 23.4 2.4e-08 33.6 6.9 3.3 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|327311122|ref|YP_004338019.1| - 2.7e-13 48.9 39.5 1.3e-07 30.9 3.3 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|327311122|ref|YP_004338019.1| - 1.3e-11 43.8 43.2 1.1e-06 28.1 3.2 5.2 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|327311122|ref|YP_004338019.1| - 1.1e-10 40.7 36.9 6.7e-06 25.7 1.9 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|327311122|ref|YP_004338019.1| - 1.7e-08 34.3 42.2 0.0014 19.0 2.2 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|327311122|ref|YP_004338019.1| - 5.2e-08 32.8 22.5 2.6e-05 24.1 1.7 3.3 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327311122|ref|YP_004338019.1| - 1.2e-07 31.4 25.0 8.6e-05 22.3 7.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|327311122|ref|YP_004338019.1| - 6.6e-07 29.8 18.8 0.0089 16.5 0.3 4.2 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|327311122|ref|YP_004338019.1| - 9e-06 26.3 23.2 2.8 8.7 0.1 5.0 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|327311122|ref|YP_004338019.1| - 5.2e-05 23.2 36.1 0.0042 17.3 2.5 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|327311122|ref|YP_004338019.1| - 0.00055 20.2 26.5 0.013 15.8 1.3 4.5 3 2 2 5 5 5 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327311122|ref|YP_004338019.1| - 0.0088 16.4 23.9 0.028 14.8 1.8 4.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|327311122|ref|YP_004338019.1| - 0.26 11.6 30.7 0.41 11.0 5.9 4.3 3 2 1 4 4 4 0 4Fe-4S single cluster domain Cytochrom_B_N PF00033.14 gi|327311123|ref|YP_004338020.1| - 7.2e-20 71.1 12.5 8.7e-20 70.8 8.7 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|327311123|ref|YP_004338020.1| - 2.2e-17 63.0 10.8 2.6e-17 62.7 7.5 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 FdhE PF04216.7 gi|327311124|ref|YP_004338021.1| - 3.8e-12 46.5 0.1 4.3e-12 46.3 0.1 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.1 gi|327311124|ref|YP_004338021.1| - 0.00011 21.2 5.7 0.16 11.2 0.1 3.5 3 0 0 3 3 3 2 zinc-ribbon domain Rubredoxin PF00301.15 gi|327311124|ref|YP_004338021.1| - 0.00068 19.4 14.7 0.039 13.8 0.1 3.4 3 0 0 3 3 3 2 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|327311124|ref|YP_004338021.1| - 0.0072 15.6 5.2 7.3 6.0 0.1 3.4 3 0 0 3 3 3 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|327311124|ref|YP_004338021.1| - 0.017 15.0 3.8 4.9 7.1 0.1 3.7 3 0 0 3 3 3 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|327311124|ref|YP_004338021.1| - 0.037 14.0 3.7 4.6 7.3 0.0 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|327311124|ref|YP_004338021.1| - 0.1 12.1 13.3 11 5.6 0.1 3.5 2 1 1 3 3 3 0 zinc-ribbon domain SprT-like PF10263.4 gi|327311124|ref|YP_004338021.1| - 0.21 11.2 0.5 0.31 10.6 0.4 1.4 1 1 0 1 1 1 0 SprT-like family CpXC PF14353.1 gi|327311124|ref|YP_004338021.1| - 0.22 11.4 2.0 0.91 9.4 0.0 2.6 2 1 1 3 3 3 0 CpXC protein Lar_restr_allev PF14354.1 gi|327311124|ref|YP_004338021.1| - 0.43 10.9 10.3 0.13 12.5 1.3 2.6 2 1 1 3 3 3 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.11 gi|327311124|ref|YP_004338021.1| - 0.47 10.1 6.2 1.5 8.5 0.0 3.4 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|327311124|ref|YP_004338021.1| - 0.67 9.8 7.1 6.7 6.6 1.8 2.8 1 1 1 2 2 2 0 Double zinc ribbon DUF1610 PF07754.6 gi|327311124|ref|YP_004338021.1| - 1 9.5 0.1 1 9.5 0.1 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) zf-HIT PF04438.11 gi|327311124|ref|YP_004338021.1| - 1.5 8.5 13.2 1.9 8.2 1.1 3.4 3 0 0 3 3 3 0 HIT zinc finger Sgf11 PF08209.6 gi|327311124|ref|YP_004338021.1| - 1.6 8.0 4.9 14 5.0 0.0 3.2 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-H2C2_2 PF13465.1 gi|327311124|ref|YP_004338021.1| - 7 7.1 7.9 13 6.2 0.1 3.2 3 0 0 3 3 3 0 Zinc-finger double domain FdhD-NarQ PF02634.10 gi|327311125|ref|YP_004338022.1| - 9.1e-38 130.0 0.2 1.3e-37 129.5 0.2 1.2 1 0 0 1 1 1 1 FdhD/NarQ family DSPc PF00782.15 gi|327311126|ref|YP_004338023.1| - 1.1e-08 34.7 0.0 1.3e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|327311126|ref|YP_004338023.1| - 2.6e-05 23.6 0.0 3e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.1 gi|327311126|ref|YP_004338023.1| - 0.00028 20.9 0.0 0.00041 20.4 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase3 PF13350.1 gi|327311126|ref|YP_004338023.1| - 0.0028 17.9 0.0 0.3 11.3 0.1 2.1 1 1 1 2 2 2 1 Tyrosine phosphatase family CDKN3 PF05706.7 gi|327311126|ref|YP_004338023.1| - 0.0069 15.8 0.0 0.011 15.2 0.0 1.3 1 1 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) DUF442 PF04273.8 gi|327311126|ref|YP_004338023.1| - 0.021 14.6 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Putative phosphatase (DUF442) AP_endonuc_2 PF01261.19 gi|327311126|ref|YP_004338023.1| - 0.091 12.0 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel ATP_bind_4 PF01902.12 gi|327311128|ref|YP_004338025.1| - 9.9e-55 185.2 0.0 1.2e-54 185.0 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region DNA_photolyase PF00875.13 gi|327311128|ref|YP_004338025.1| - 0.0091 15.7 0.3 0.086 12.5 0.1 2.2 1 1 0 1 1 1 1 DNA photolyase DAP_epimerase PF01678.14 gi|327311128|ref|YP_004338025.1| - 0.059 13.2 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 Diaminopimelate epimerase ABC_tran PF00005.22 gi|327311130|ref|YP_004338027.1| - 2.1e-09 37.7 0.0 2.6e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|327311130|ref|YP_004338027.1| - 3e-05 23.4 0.0 4.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|327311130|ref|YP_004338027.1| - 0.0019 17.4 0.0 0.0026 17.0 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|327311130|ref|YP_004338027.1| - 0.0025 17.8 0.0 0.0026 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|327311130|ref|YP_004338027.1| - 0.01 15.0 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|327311130|ref|YP_004338027.1| - 0.014 15.5 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|327311130|ref|YP_004338027.1| - 0.021 14.2 0.1 0.039 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|327311130|ref|YP_004338027.1| - 0.025 14.5 0.0 0.026 14.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|327311130|ref|YP_004338027.1| - 0.039 13.3 0.0 0.056 12.8 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|327311130|ref|YP_004338027.1| - 0.04 14.7 0.0 0.056 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain PRK PF00485.13 gi|327311130|ref|YP_004338027.1| - 0.041 13.4 0.0 0.045 13.3 0.0 1.1 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_23 PF13476.1 gi|327311130|ref|YP_004338027.1| - 0.057 13.7 0.0 0.06 13.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|327311130|ref|YP_004338027.1| - 0.082 11.7 0.0 0.082 11.7 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|327311130|ref|YP_004338027.1| - 0.1 12.9 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|327311130|ref|YP_004338027.1| - 0.1 12.2 0.0 0.17 11.6 0.0 1.4 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|327311130|ref|YP_004338027.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|327311130|ref|YP_004338027.1| - 0.12 11.9 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 NACHT domain TOBE PF03459.12 gi|327311131|ref|YP_004338028.1| - 0.0026 17.8 3.7 0.0041 17.2 0.3 2.6 2 1 1 3 3 3 1 TOBE domain Molydop_binding PF01568.16 gi|327311131|ref|YP_004338028.1| - 0.0028 17.4 0.1 0.0046 16.7 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF692 PF05114.8 gi|327311131|ref|YP_004338028.1| - 0.069 12.0 0.0 0.088 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF692) NTP_transf_2 PF01909.18 gi|327311132|ref|YP_004338029.1| - 3.6e-09 36.8 1.2 8e-09 35.7 0.8 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|327311132|ref|YP_004338029.1| - 0.0057 16.2 0.0 0.027 14.1 0.0 1.8 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|327311133|ref|YP_004338030.1| - 6.4e-11 42.1 0.0 7.6e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 HEPN domain CR6_interact PF10147.4 gi|327311133|ref|YP_004338030.1| - 0.064 12.5 0.0 0.064 12.5 0.0 1.2 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 PseudoU_synth_1 PF01416.15 gi|327311135|ref|YP_004338032.1| - 1.6e-22 79.8 0.0 1.3e-15 57.6 0.0 3.1 2 1 0 2 2 2 2 tRNA pseudouridine synthase Amidohydro_5 PF13594.1 gi|327311136|ref|YP_004338033.1| - 0.0018 18.0 0.2 0.0041 16.9 0.1 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|327311136|ref|YP_004338033.1| - 0.029 14.0 0.0 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 Amidohydrolase family Amidohydro_4 PF13147.1 gi|327311136|ref|YP_004338033.1| - 2.3 8.1 9.9 5.4 6.9 6.9 1.7 1 1 0 1 1 1 0 Amidohydrolase Radical_SAM PF04055.16 gi|327311137|ref|YP_004338034.1| - 0.0037 17.4 0.0 0.029 14.5 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily SinI PF08671.5 gi|327311138|ref|YP_004338035.1| - 0.0077 15.6 2.8 0.22 10.9 1.0 2.3 2 0 0 2 2 2 2 Anti-repressor SinI UPF0175 PF03683.8 gi|327311138|ref|YP_004338035.1| - 0.024 14.1 0.6 0.042 13.3 0.4 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0175) HIT PF01230.18 gi|327311139|ref|YP_004338036.1| - 6.7e-23 81.0 0.0 1.1e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|327311139|ref|YP_004338036.1| - 7.5e-13 48.7 0.0 1.1e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding MaoC_dehydratas PF01575.14 gi|327311140|ref|YP_004338037.1| - 7.7e-31 106.0 0.1 1e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|327311140|ref|YP_004338037.1| - 3.8e-11 42.8 0.1 5.3e-11 42.4 0.1 1.1 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|327311140|ref|YP_004338037.1| - 3.3e-05 23.9 0.0 0.0001 22.3 0.0 2.0 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|327311140|ref|YP_004338037.1| - 0.00019 21.8 0.0 0.00021 21.7 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily TP_methylase PF00590.15 gi|327311141|ref|YP_004338038.1| - 1.5e-26 93.4 0.4 1.9e-26 93.1 0.3 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GTP_EFTU PF00009.22 gi|327311143|ref|YP_004338040.1| - 2.6e-26 92.2 0.0 3.3e-25 88.6 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.1 gi|327311143|ref|YP_004338040.1| - 3.7e-23 80.9 3.2 3.7e-23 80.9 2.2 2.9 2 1 0 3 3 3 1 Elongation factor Tu domain 4 IF-2 PF11987.3 gi|327311143|ref|YP_004338040.1| - 1.1e-17 63.8 0.0 2.2e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|327311143|ref|YP_004338040.1| - 5.2e-15 55.3 11.1 5.1e-10 39.3 1.4 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|327311143|ref|YP_004338040.1| - 3.6e-05 23.6 0.0 7.1e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|327311143|ref|YP_004338040.1| - 0.0022 18.4 0.0 0.0056 17.1 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein UAA PF08449.6 gi|327311144|ref|YP_004338041.1| - 0.014 14.3 0.0 0.11 11.4 0.0 1.9 1 1 1 2 2 2 0 UAA transporter family Ribosomal_S6e PF01092.14 gi|327311145|ref|YP_004338042.1| - 4.7e-26 90.9 0.1 6e-26 90.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e AsnC_trans_reg PF01037.16 gi|327311146|ref|YP_004338043.1| - 1.5e-15 56.6 0.2 1.7e-15 56.4 0.1 1.1 1 0 0 1 1 1 1 AsnC family UbiA PF01040.13 gi|327311147|ref|YP_004338044.1| - 3.9e-27 95.1 30.6 4.8e-27 94.8 21.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family adh_short_C2 PF13561.1 gi|327311150|ref|YP_004338047.1| - 7.8e-33 114.2 0.1 9.7e-33 113.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|327311150|ref|YP_004338047.1| - 2.7e-29 102.2 5.1 3.7e-29 101.7 3.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|327311150|ref|YP_004338047.1| - 3.7e-09 36.5 1.9 5e-09 36.0 1.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|327311150|ref|YP_004338047.1| - 5e-06 26.1 0.8 2.8e-05 23.6 0.6 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family YjeF_N PF03853.10 gi|327311150|ref|YP_004338047.1| - 0.066 12.8 0.4 0.14 11.7 0.3 1.6 1 0 0 1 1 1 0 YjeF-related protein N-terminus 2-Hacid_dh_C PF02826.14 gi|327311150|ref|YP_004338047.1| - 0.13 11.3 0.4 1.2 8.2 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Nif11 PF07862.6 gi|327311151|ref|YP_004338048.1| - 0.011 15.6 0.4 0.053 13.4 0.1 2.2 3 0 0 3 3 3 0 Nitrogen fixation protein of unknown function DUF402 PF04167.8 gi|327311152|ref|YP_004338049.1| - 3.1e-15 55.7 0.0 5.7e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) SurE PF01975.12 gi|327311153|ref|YP_004338050.1| - 5.6e-41 140.0 0.0 7e-41 139.6 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE MFS_1 PF07690.11 gi|327311154|ref|YP_004338051.1| - 1.3e-31 109.5 62.3 3.8e-24 85.0 25.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|327311154|ref|YP_004338051.1| - 6.9e-05 21.1 29.3 8.9e-05 20.7 20.3 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.2 gi|327311154|ref|YP_004338051.1| - 0.00097 18.8 0.5 0.00097 18.8 0.4 2.9 3 0 0 3 3 3 1 MFS_1 like family Nitroreductase PF00881.19 gi|327311155|ref|YP_004338052.1| - 3.2e-34 118.1 0.0 4.2e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family MtN3_slv PF03083.11 gi|327311155|ref|YP_004338052.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange DUF1691 PF07950.6 gi|327311156|ref|YP_004338053.1| - 0.014 15.3 0.4 0.022 14.7 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1691) PsbN PF02468.10 gi|327311156|ref|YP_004338053.1| - 0.094 12.3 1.4 0.094 12.3 1.0 2.6 3 0 0 3 3 3 0 Photosystem II reaction centre N protein (psbN) Fucose_iso_C PF02952.12 gi|327311157|ref|YP_004338054.1| - 2e-10 40.3 0.0 3.3e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain Asp_Glu_race PF01177.17 gi|327311157|ref|YP_004338054.1| - 0.092 12.6 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Asp/Glu/Hydantoin racemase OsmC PF02566.14 gi|327311159|ref|YP_004338056.1| - 0.00064 19.8 0.5 1 9.6 0.0 2.1 1 1 1 2 2 2 2 OsmC-like protein CstA PF02554.9 gi|327311161|ref|YP_004338058.1| - 3.6e-105 351.7 23.8 3.6e-105 351.7 16.5 2.5 1 1 2 3 3 3 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|327311161|ref|YP_004338058.1| - 2.1e-23 83.0 10.0 2.1e-23 83.0 6.9 3.3 6 0 0 6 6 6 1 C-terminal domain on CstA (DUF4161) DUF3981 PF13139.1 gi|327311161|ref|YP_004338058.1| - 0.0016 18.4 4.5 0.0016 18.4 3.1 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF3981) ArsA_ATPase PF02374.10 gi|327311163|ref|YP_004338060.1| - 7.4e-69 232.1 0.0 8.4e-69 231.9 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|327311163|ref|YP_004338060.1| - 6.1e-18 64.9 0.8 1.7e-16 60.1 0.5 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|327311163|ref|YP_004338060.1| - 8.3e-09 35.2 0.2 2.8e-06 27.0 0.0 3.2 3 0 0 3 3 3 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|327311163|ref|YP_004338060.1| - 2.2e-07 30.9 0.0 6.8e-07 29.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|327311163|ref|YP_004338060.1| - 0.00048 19.4 0.7 0.0046 16.1 0.0 2.9 4 0 0 4 4 4 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|327311163|ref|YP_004338060.1| - 0.0047 16.3 0.0 0.0088 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|327311163|ref|YP_004338060.1| - 0.0084 14.9 0.2 0.062 12.1 0.1 2.1 2 0 0 2 2 2 1 NB-ARC domain Thioredoxin_7 PF13899.1 gi|327311163|ref|YP_004338060.1| - 0.02 14.8 0.0 0.055 13.4 0.0 1.7 1 0 0 1 1 1 0 Thioredoxin-like AAA_26 PF13500.1 gi|327311163|ref|YP_004338060.1| - 0.036 13.6 1.1 0.051 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|327311163|ref|YP_004338060.1| - 0.046 13.2 0.1 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|327311163|ref|YP_004338060.1| - 0.068 12.2 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 VirC1 protein YjeF_N PF03853.10 gi|327311163|ref|YP_004338060.1| - 0.068 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus PhoH PF02562.11 gi|327311163|ref|YP_004338060.1| - 0.091 11.9 3.8 2.9 7.0 1.2 3.4 2 1 1 3 3 3 0 PhoH-like protein ArsA_ATPase PF02374.10 gi|327311164|ref|YP_004338061.1| - 1.2e-60 205.1 0.0 1.3e-60 205.0 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|327311164|ref|YP_004338061.1| - 1.3e-11 44.2 0.3 5e-10 39.1 0.2 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|327311164|ref|YP_004338061.1| - 6.7e-07 29.1 0.0 1.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|327311164|ref|YP_004338061.1| - 0.00013 21.9 0.2 0.00065 19.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|327311164|ref|YP_004338061.1| - 0.0093 15.5 0.1 1 8.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|327311164|ref|YP_004338061.1| - 0.019 14.7 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain Fer4_NifH PF00142.13 gi|327311164|ref|YP_004338061.1| - 0.024 13.8 0.0 0.051 12.7 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NOD PF06816.8 gi|327311164|ref|YP_004338061.1| - 0.031 13.3 0.0 0.071 12.2 0.0 1.6 1 0 0 1 1 1 0 NOTCH protein YhjQ PF06564.7 gi|327311164|ref|YP_004338061.1| - 0.031 13.6 0.0 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 YhjQ protein DUF3901 PF13040.1 gi|327311165|ref|YP_004338062.1| - 0.0079 15.4 0.6 0.012 14.8 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3901) Methyltransf_23 PF13489.1 gi|327311167|ref|YP_004338064.1| - 6e-10 39.0 0.0 2.6e-09 36.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|327311167|ref|YP_004338064.1| - 0.011 16.1 0.0 0.024 15.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain F-box-like PF12937.2 gi|327311167|ref|YP_004338064.1| - 0.039 13.6 0.0 0.076 12.7 0.0 1.5 1 0 0 1 1 1 0 F-box-like Methyltransf_24 PF13578.1 gi|327311167|ref|YP_004338064.1| - 0.044 14.6 0.0 0.15 12.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Ribosomal_L9_N PF01281.14 gi|327311167|ref|YP_004338064.1| - 0.069 12.3 0.0 0.14 11.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L9, N-terminal domain Thioredoxin_3 PF13192.1 gi|327311168|ref|YP_004338065.1| - 0.0042 16.8 0.0 0.21 11.4 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin domain Radical_SAM PF04055.16 gi|327311169|ref|YP_004338066.1| - 3.7e-25 89.0 0.0 7.7e-25 87.9 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|327311169|ref|YP_004338066.1| - 7.6e-09 35.7 0.1 1.5e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|327311169|ref|YP_004338066.1| - 8.7e-08 32.3 0.0 1.7e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|327311169|ref|YP_004338066.1| - 1.5e-07 30.9 0.0 6.8e-05 22.2 0.0 2.4 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Fer4_14 PF13394.1 gi|327311169|ref|YP_004338066.1| - 2.4e-07 30.8 0.0 4.4e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glyco_hydro_97 PF10566.4 gi|327311169|ref|YP_004338066.1| - 0.00014 21.1 0.0 0.14 11.2 0.0 2.1 2 0 0 2 2 2 2 Glycoside hydrolase 97 Sugar_tr PF00083.19 gi|327311170|ref|YP_004338067.1| - 2.4e-13 49.4 11.2 2.4e-13 49.4 7.8 2.1 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|327311170|ref|YP_004338067.1| - 2e-08 33.3 55.6 2e-08 33.3 38.5 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Peptidase_M20 PF01546.23 gi|327311171|ref|YP_004338068.1| - 6.9e-22 77.8 0.1 8.3e-22 77.6 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|327311171|ref|YP_004338068.1| - 5.1e-11 42.2 0.0 9.8e-11 41.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain AAA_21 PF13304.1 gi|327311172|ref|YP_004338069.1| - 1.8e-16 60.9 0.0 2.5e-08 34.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|327311172|ref|YP_004338069.1| - 4.6e-09 35.8 0.0 0.00019 20.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|327311172|ref|YP_004338069.1| - 1.4e-08 35.2 0.0 2e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2813 PF11398.3 gi|327311172|ref|YP_004338069.1| - 0.0001 21.5 0.7 0.00068 18.8 0.0 2.2 2 1 1 3 3 3 1 Protein of unknown function (DUF2813) SMC_N PF02463.14 gi|327311172|ref|YP_004338069.1| - 0.0002 20.6 0.0 0.00039 19.7 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|327311172|ref|YP_004338069.1| - 0.0004 19.8 0.0 0.00084 18.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|327311172|ref|YP_004338069.1| - 0.00096 19.4 0.0 0.0021 18.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_14 PF13173.1 gi|327311172|ref|YP_004338069.1| - 0.0023 17.8 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|327311172|ref|YP_004338069.1| - 0.0036 16.7 0.0 0.1 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|327311172|ref|YP_004338069.1| - 0.0084 16.1 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|327311172|ref|YP_004338069.1| - 0.026 14.4 0.3 0.36 10.6 0.2 2.2 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|327311172|ref|YP_004338069.1| - 0.034 13.9 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Dynamin family AAA_25 PF13481.1 gi|327311172|ref|YP_004338069.1| - 0.034 13.5 0.0 0.17 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|327311172|ref|YP_004338069.1| - 0.047 13.3 0.0 0.078 12.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|327311172|ref|YP_004338069.1| - 0.059 12.9 0.1 1.8 8.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|327311172|ref|YP_004338069.1| - 0.062 13.4 0.0 0.35 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|327311172|ref|YP_004338069.1| - 0.079 12.6 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|327311172|ref|YP_004338069.1| - 0.16 11.7 2.1 3.6 7.4 0.1 2.8 3 0 0 3 3 3 0 Part of AAA domain DUF3227 PF11537.3 gi|327311174|ref|YP_004338071.1| - 0.0003 20.8 0.0 0.00036 20.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3227) DHHA2 PF02833.9 gi|327311174|ref|YP_004338071.1| - 0.0056 16.8 0.0 0.0067 16.6 0.0 1.1 1 0 0 1 1 1 1 DHHA2 domain Semialdhyde_dh PF01118.19 gi|327311176|ref|YP_004338073.1| - 7e-32 110.2 0.0 1.1e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|327311176|ref|YP_004338073.1| - 2.6e-12 46.9 0.0 4.9e-12 46.0 0.0 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.12 gi|327311176|ref|YP_004338073.1| - 0.024 15.0 0.0 0.057 13.8 0.0 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|327311176|ref|YP_004338073.1| - 0.046 14.2 0.0 0.14 12.6 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|327311176|ref|YP_004338073.1| - 0.074 12.9 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|327311176|ref|YP_004338073.1| - 0.12 11.2 0.0 0.19 10.6 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase AA_kinase PF00696.23 gi|327311177|ref|YP_004338074.1| - 8.7e-35 120.3 0.8 1.1e-34 120.0 0.6 1.1 1 0 0 1 1 1 1 Amino acid kinase family Arch_ATPase PF01637.13 gi|327311178|ref|YP_004338075.1| - 1e-36 126.8 0.0 1.4e-36 126.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|327311178|ref|YP_004338075.1| - 1.1e-07 32.0 0.9 8.6e-07 29.1 0.0 2.4 2 2 1 3 3 3 1 AAA ATPase domain AAA_18 PF13238.1 gi|327311178|ref|YP_004338075.1| - 0.00023 21.4 0.0 0.00047 20.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|327311178|ref|YP_004338075.1| - 0.00035 21.3 0.1 0.0033 18.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|327311178|ref|YP_004338075.1| - 0.00074 19.6 0.0 0.0015 18.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|327311178|ref|YP_004338075.1| - 0.00084 18.9 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|327311178|ref|YP_004338075.1| - 0.0033 17.4 0.0 0.016 15.2 0.0 2.1 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_28 PF13521.1 gi|327311178|ref|YP_004338075.1| - 0.0033 17.4 0.0 0.0059 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|327311178|ref|YP_004338075.1| - 0.007 16.0 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|327311178|ref|YP_004338075.1| - 0.0099 15.7 0.0 0.02 14.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|327311178|ref|YP_004338075.1| - 0.01 16.0 0.0 0.017 15.2 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|327311178|ref|YP_004338075.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|327311178|ref|YP_004338075.1| - 0.011 15.8 0.0 0.021 15.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|327311178|ref|YP_004338075.1| - 0.046 14.0 0.0 0.089 13.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter KAP_NTPase PF07693.9 gi|327311178|ref|YP_004338075.1| - 0.084 11.8 0.0 0.088 11.7 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain Zeta_toxin PF06414.7 gi|327311178|ref|YP_004338075.1| - 0.094 11.8 0.0 0.49 9.4 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin Bac_DnaA PF00308.13 gi|327311178|ref|YP_004338075.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein Rad17 PF03215.10 gi|327311178|ref|YP_004338075.1| - 0.14 10.8 0.0 0.2 10.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Pox_A32 PF04665.7 gi|327311178|ref|YP_004338075.1| - 0.15 11.2 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein Miro PF08477.8 gi|327311178|ref|YP_004338075.1| - 0.17 12.3 0.0 0.39 11.2 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein HypA PF01155.14 gi|327311179|ref|YP_004338076.1| - 6.1e-06 25.9 0.2 6.4e-06 25.8 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|327311179|ref|YP_004338076.1| - 2.6e-05 23.7 1.5 0.0055 16.2 1.0 2.2 1 1 1 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|327311179|ref|YP_004338076.1| - 3.1e-05 23.8 0.5 4.4e-05 23.3 0.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|327311179|ref|YP_004338076.1| - 5.5e-05 22.7 1.7 0.069 12.8 0.1 2.2 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327311179|ref|YP_004338076.1| - 0.00023 20.3 3.5 0.00058 19.1 2.5 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding zf-CSL PF05207.8 gi|327311179|ref|YP_004338076.1| - 0.00052 19.4 0.4 0.00052 19.4 0.3 1.5 2 0 0 2 2 2 1 CSL zinc finger Prok-RING_1 PF14446.1 gi|327311179|ref|YP_004338076.1| - 0.00085 19.0 1.9 0.0024 17.5 1.3 1.7 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-CHCC PF10276.4 gi|327311179|ref|YP_004338076.1| - 0.0017 18.1 0.2 0.62 9.9 0.0 2.1 2 0 0 2 2 2 1 Zinc-finger domain DZR PF12773.2 gi|327311179|ref|YP_004338076.1| - 0.01 15.5 0.6 0.015 15.0 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon DUF3797 PF12677.2 gi|327311179|ref|YP_004338076.1| - 0.011 15.3 1.1 1.7 8.2 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) UPF0547 PF10571.4 gi|327311179|ref|YP_004338076.1| - 0.018 14.7 1.1 4.3 7.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Elf1 PF05129.8 gi|327311179|ref|YP_004338076.1| - 0.024 14.3 0.8 0.57 9.9 0.1 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-HYPF PF07503.7 gi|327311179|ref|YP_004338076.1| - 0.026 13.9 1.5 0.77 9.2 0.1 2.1 2 0 0 2 2 2 0 HypF finger zf-C2H2 PF00096.21 gi|327311179|ref|YP_004338076.1| - 0.028 14.7 0.8 4.5 7.8 0.0 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.1 gi|327311179|ref|YP_004338076.1| - 0.033 13.6 0.8 4.8 6.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-UDP PF14569.1 gi|327311179|ref|YP_004338076.1| - 0.043 13.5 0.3 0.081 12.6 0.2 1.5 1 1 0 1 1 1 0 Zinc-binding RING-finger PhnA_Zn_Ribbon PF08274.7 gi|327311179|ref|YP_004338076.1| - 0.047 13.4 0.9 0.08 12.7 0.7 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon zf-BED PF02892.10 gi|327311179|ref|YP_004338076.1| - 0.051 13.3 0.9 2.8 7.7 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger DUF2072 PF09845.4 gi|327311179|ref|YP_004338076.1| - 0.056 13.3 0.2 0.058 13.3 0.2 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-tcix PF14952.1 gi|327311179|ref|YP_004338076.1| - 0.059 12.7 1.1 1.5 8.2 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-CHY PF05495.7 gi|327311179|ref|YP_004338076.1| - 0.059 13.5 0.4 0.068 13.3 0.2 1.1 1 0 0 1 1 1 0 CHY zinc finger FYVE PF01363.16 gi|327311179|ref|YP_004338076.1| - 0.072 12.9 0.4 11 6.0 0.0 2.0 1 1 1 2 2 2 0 FYVE zinc finger DNA_RNApol_7kD PF03604.8 gi|327311179|ref|YP_004338076.1| - 0.1 12.0 3.4 4.2 6.9 0.3 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit IBR PF01485.16 gi|327311179|ref|YP_004338076.1| - 0.11 12.3 0.4 5.4 6.9 0.1 2.1 2 0 0 2 2 2 0 IBR domain RecR PF02132.10 gi|327311179|ref|YP_004338076.1| - 0.12 11.8 1.1 4 6.9 0.2 2.1 2 0 0 2 2 2 0 RecR protein zf-NADH-PPase PF09297.6 gi|327311179|ref|YP_004338076.1| - 0.13 11.8 1.3 3.3 7.2 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1451 PF07295.6 gi|327311179|ref|YP_004338076.1| - 0.13 12.0 0.1 0.17 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) RNA_POL_M_15KD PF02150.11 gi|327311179|ref|YP_004338076.1| - 0.14 11.8 0.4 3.6 7.3 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_ligase_ZBD PF03119.11 gi|327311179|ref|YP_004338076.1| - 0.18 11.5 1.0 2.1 8.1 0.1 2.4 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TFIIS_C PF01096.13 gi|327311179|ref|YP_004338076.1| - 0.18 11.4 1.2 13 5.4 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) COX5B PF01215.14 gi|327311179|ref|YP_004338076.1| - 0.18 11.4 0.7 2.7 7.6 0.0 2.0 1 1 1 2 2 2 0 Cytochrome c oxidase subunit Vb ADK_lid PF05191.9 gi|327311179|ref|YP_004338076.1| - 0.21 11.2 1.5 5.8 6.6 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid CpXC PF14353.1 gi|327311179|ref|YP_004338076.1| - 0.22 11.4 1.7 8.6 6.3 0.0 2.1 1 1 1 2 2 2 0 CpXC protein zf-TFIIB PF13453.1 gi|327311179|ref|YP_004338076.1| - 0.27 10.4 1.6 0.42 9.8 1.1 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|327311179|ref|YP_004338076.1| - 0.53 9.5 4.3 4.2 6.7 0.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2_3 PF13878.1 gi|327311179|ref|YP_004338076.1| - 0.54 9.8 3.0 7.1 6.2 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Lar_restr_allev PF14354.1 gi|327311179|ref|YP_004338076.1| - 0.61 10.4 2.4 13 6.1 0.2 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Rubredoxin PF00301.15 gi|327311179|ref|YP_004338076.1| - 0.8 9.6 4.4 45 4.0 3.1 2.2 1 1 0 1 1 1 0 Rubredoxin zf-HIT PF04438.11 gi|327311179|ref|YP_004338076.1| - 1.5 8.5 7.0 2.6 7.7 1.0 2.1 2 0 0 2 2 2 0 HIT zinc finger Arginosuc_synth PF00764.14 gi|327311180|ref|YP_004338077.1| - 7.8e-121 403.7 0.0 9.5e-121 403.4 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase CbiX PF01903.12 gi|327311181|ref|YP_004338078.1| - 0.014 15.4 0.0 0.19 11.8 0.0 2.6 2 1 0 2 2 2 0 CbiX Iso_dh PF00180.15 gi|327311183|ref|YP_004338080.1| - 5e-93 311.8 0.4 5.7e-93 311.6 0.3 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|327311183|ref|YP_004338080.1| - 0.017 14.3 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA DUF328 PF03883.9 gi|327311184|ref|YP_004338081.1| - 0.019 14.2 0.0 0.027 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF328) TPR_7 PF13176.1 gi|327311184|ref|YP_004338081.1| - 0.027 14.2 0.8 1.1 9.1 0.0 3.0 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|327311184|ref|YP_004338081.1| - 0.039 13.8 1.4 2.4 8.3 0.1 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|327311184|ref|YP_004338081.1| - 0.039 14.5 4.7 7.2 7.5 0.3 3.9 3 2 0 3 3 3 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|327311184|ref|YP_004338081.1| - 0.045 13.6 0.2 11 6.0 0.1 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat HMGL-like PF00682.14 gi|327311185|ref|YP_004338082.1| - 6.5e-57 192.9 2.8 1.8e-56 191.4 1.9 1.7 1 0 0 1 1 1 1 HMGL-like AsnC_trans_reg PF01037.16 gi|327311185|ref|YP_004338082.1| - 3.9e-13 48.9 0.3 1.1e-12 47.4 0.2 1.9 1 0 0 1 1 1 1 AsnC family ACT_4 PF13291.1 gi|327311185|ref|YP_004338082.1| - 0.0017 18.6 0.4 0.22 11.8 0.0 2.8 1 1 1 2 2 2 1 ACT domain Aldolase_II PF00596.16 gi|327311185|ref|YP_004338082.1| - 0.018 14.6 0.2 0.031 13.8 0.1 1.5 1 0 0 1 1 1 0 Class II Aldolase and Adducin N-terminal domain YtzH PF14165.1 gi|327311185|ref|YP_004338082.1| - 0.058 13.6 0.5 1.3 9.2 0.0 2.8 3 0 0 3 3 3 0 YtzH-like protein AlkA_N PF06029.6 gi|327311185|ref|YP_004338082.1| - 0.82 9.7 3.3 1.5 8.9 0.1 2.7 2 1 0 3 3 3 0 AlkA N-terminal domain Aconitase_C PF00694.14 gi|327311186|ref|YP_004338083.1| - 4.1e-17 62.5 0.0 5.4e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|327311186|ref|YP_004338083.1| - 0.0017 17.7 0.1 0.021 14.2 0.1 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus TPP_enzyme_N PF02776.13 gi|327311187|ref|YP_004338084.1| - 8.8e-53 178.3 1.7 4.5e-52 176.0 0.2 2.6 4 0 0 4 4 4 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|327311187|ref|YP_004338084.1| - 5.7e-44 149.1 0.2 4.1e-43 146.4 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|327311187|ref|YP_004338084.1| - 1.1e-43 148.4 0.1 6.4e-42 142.7 0.0 3.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HGD-D PF06050.8 gi|327311187|ref|YP_004338084.1| - 0.003 16.4 0.0 0.76 8.5 0.0 2.7 3 0 0 3 3 3 2 2-hydroxyglutaryl-CoA dehydratase, D-component FAD_binding_4 PF01565.18 gi|327311187|ref|YP_004338084.1| - 0.0043 16.5 0.1 1.8 8.0 0.0 2.7 2 0 0 2 2 2 2 FAD binding domain TIR_2 PF13676.1 gi|327311187|ref|YP_004338084.1| - 0.0081 16.2 0.1 0.14 12.2 0.0 2.9 3 0 0 3 3 3 1 TIR domain POR_N PF01855.14 gi|327311187|ref|YP_004338084.1| - 0.044 13.2 2.6 0.091 12.2 1.4 1.7 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AP_endonuc_2 PF01261.19 gi|327311187|ref|YP_004338084.1| - 0.062 12.5 0.1 2.3 7.4 0.0 3.1 3 1 0 3 3 3 0 Xylose isomerase-like TIM barrel CO_dh PF02552.11 gi|327311187|ref|YP_004338084.1| - 0.16 11.5 0.1 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ACT_5 PF13710.1 gi|327311188|ref|YP_004338085.1| - 3.1e-12 46.1 0.1 3.6e-12 45.8 0.1 1.1 1 0 0 1 1 1 1 ACT domain DUF370 PF04025.7 gi|327311188|ref|YP_004338085.1| - 0.046 13.7 0.3 0.11 12.5 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF370) IlvN PF07991.7 gi|327311189|ref|YP_004338086.1| - 3.7e-74 247.5 0.1 7.4e-74 246.5 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|327311189|ref|YP_004338086.1| - 1.2e-45 155.0 0.0 1.7e-45 154.5 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|327311189|ref|YP_004338086.1| - 1.7e-07 30.5 0.0 3.3e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|327311189|ref|YP_004338086.1| - 2.1e-06 28.0 0.0 5.3e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|327311189|ref|YP_004338086.1| - 7.2e-06 25.9 0.0 1.4e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|327311189|ref|YP_004338086.1| - 2.2e-05 24.3 0.0 4.1e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|327311189|ref|YP_004338086.1| - 0.00093 18.6 0.0 0.0021 17.5 0.0 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|327311189|ref|YP_004338086.1| - 0.01 15.8 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding Aminotran_4 PF01063.14 gi|327311190|ref|YP_004338087.1| - 4.9e-51 173.4 0.0 5.8e-51 173.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV PGM_PMM_I PF02878.11 gi|327311190|ref|YP_004338087.1| - 0.018 14.5 0.0 0.27 10.7 0.0 2.2 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Glyco_hydro_12 PF01670.11 gi|327311192|ref|YP_004338089.1| - 1.8e-27 96.0 0.0 2.7e-27 95.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 Glyco_hydro_25 PF01183.15 gi|327311192|ref|YP_004338089.1| - 0.17 11.6 1.8 0.18 11.6 0.4 1.6 2 0 0 2 2 2 0 Glycosyl hydrolases family 25 Glyco_hydro_1 PF00232.13 gi|327311193|ref|YP_004338090.1| - 2e-68 230.6 6.4 1.6e-59 201.2 0.5 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.13 gi|327311193|ref|YP_004338090.1| - 0.00017 20.8 0.0 0.00041 19.6 0.0 1.6 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) VirC1 PF07015.6 gi|327311193|ref|YP_004338090.1| - 0.1 11.6 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein SBP_bac_5 PF00496.17 gi|327311194|ref|YP_004338091.1| - 1.2e-40 139.4 10.0 1.2e-40 139.4 6.9 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|327311195|ref|YP_004338092.1| - 3.2e-35 121.3 14.2 3.2e-35 121.3 9.8 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|327311196|ref|YP_004338093.1| - 6e-17 61.7 21.7 6e-17 61.7 15.0 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|327311196|ref|YP_004338093.1| - 0.00013 21.2 0.1 0.00013 21.2 0.1 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|327311197|ref|YP_004338094.1| - 1.4e-20 74.0 0.0 1.8e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|327311197|ref|YP_004338094.1| - 1.4e-19 70.1 0.1 2.4e-19 69.4 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|327311197|ref|YP_004338094.1| - 3.3e-08 33.8 0.0 1e-07 32.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|327311197|ref|YP_004338094.1| - 0.00012 21.5 0.0 0.00024 20.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|327311197|ref|YP_004338094.1| - 0.039 13.9 0.5 0.13 12.1 0.3 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.1 gi|327311197|ref|YP_004338094.1| - 0.049 12.0 0.3 0.33 9.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|327311197|ref|YP_004338094.1| - 0.051 13.7 0.5 0.24 11.5 0.4 2.0 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|327311197|ref|YP_004338094.1| - 0.086 12.6 0.2 0.19 11.5 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|327311197|ref|YP_004338094.1| - 0.17 12.2 0.1 0.37 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|327311198|ref|YP_004338095.1| - 7.4e-32 110.5 0.0 9.8e-32 110.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|327311198|ref|YP_004338095.1| - 1.2e-18 67.2 0.0 2.1e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|327311198|ref|YP_004338095.1| - 1e-08 35.5 0.4 0.0013 18.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|327311198|ref|YP_004338095.1| - 7.7e-06 26.0 0.2 5.7e-05 23.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327311198|ref|YP_004338095.1| - 5.9e-05 23.1 0.0 8.7e-05 22.5 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|327311198|ref|YP_004338095.1| - 0.00017 21.0 0.0 0.00035 20.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|327311198|ref|YP_004338095.1| - 0.0008 19.7 0.0 0.0015 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|327311198|ref|YP_004338095.1| - 0.0011 18.6 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|327311198|ref|YP_004338095.1| - 0.0015 17.7 0.3 0.0033 16.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Avl9 PF09794.4 gi|327311198|ref|YP_004338095.1| - 0.0036 15.8 0.0 0.039 12.4 0.0 1.9 1 1 0 2 2 2 1 Transport protein Avl9 AAA_15 PF13175.1 gi|327311198|ref|YP_004338095.1| - 0.0036 16.4 0.0 0.022 13.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain UPF0079 PF02367.12 gi|327311198|ref|YP_004338095.1| - 0.0044 16.6 0.0 0.0079 15.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_23 PF13476.1 gi|327311198|ref|YP_004338095.1| - 0.0055 17.0 0.0 0.007 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Pox_A32 PF04665.7 gi|327311198|ref|YP_004338095.1| - 0.0061 15.8 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Poxvirus A32 protein DUF3987 PF13148.1 gi|327311198|ref|YP_004338095.1| - 0.0068 15.0 0.0 0.013 14.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3987) NACHT PF05729.7 gi|327311198|ref|YP_004338095.1| - 0.0073 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.1 gi|327311198|ref|YP_004338095.1| - 0.013 14.9 0.1 0.12 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|327311198|ref|YP_004338095.1| - 0.014 14.9 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|327311198|ref|YP_004338095.1| - 0.033 13.0 0.1 0.052 12.4 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|327311198|ref|YP_004338095.1| - 0.033 13.9 0.1 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|327311198|ref|YP_004338095.1| - 0.035 14.9 0.0 0.056 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|327311198|ref|YP_004338095.1| - 0.045 12.8 0.1 2.5 7.1 0.0 2.2 2 0 0 2 2 2 0 KaiC cobW PF02492.14 gi|327311198|ref|YP_004338095.1| - 0.048 13.0 0.2 0.085 12.3 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|327311198|ref|YP_004338095.1| - 0.062 13.1 0.0 0.096 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|327311198|ref|YP_004338095.1| - 0.063 13.4 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|327311198|ref|YP_004338095.1| - 0.064 12.1 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|327311198|ref|YP_004338095.1| - 0.075 12.4 0.1 0.24 10.7 0.0 1.8 1 1 0 2 2 2 0 AAA-like domain Miro PF08477.8 gi|327311198|ref|YP_004338095.1| - 0.1 13.0 0.0 0.19 12.2 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|327311198|ref|YP_004338095.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|327311198|ref|YP_004338095.1| - 0.11 12.2 0.1 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA PF00004.24 gi|327311198|ref|YP_004338095.1| - 0.14 12.3 0.0 0.71 10.0 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|327311198|ref|YP_004338095.1| - 0.14 11.9 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain zf-CCCH_2 PF14608.1 gi|327311198|ref|YP_004338095.1| - 0.18 11.8 0.6 0.31 11.0 0.4 1.4 1 0 0 1 1 1 0 Zinc finger C-x8-C-x5-C-x3-H type EspG PF06872.6 gi|327311198|ref|YP_004338095.1| - 0.2 9.9 0.0 0.28 9.4 0.0 1.2 1 0 0 1 1 1 0 EspG protein adh_short_C2 PF13561.1 gi|327311201|ref|YP_004338098.1| - 1.7e-23 83.6 0.0 1.9e-23 83.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|327311201|ref|YP_004338098.1| - 2.3e-15 56.8 3.0 1.1e-14 54.7 2.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|327311201|ref|YP_004338098.1| - 6.3e-09 36.0 0.3 1.3e-08 35.0 0.1 1.4 1 1 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|327311201|ref|YP_004338098.1| - 1.4e-05 24.8 1.3 0.00081 19.0 0.9 2.1 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|327311201|ref|YP_004338098.1| - 4.7e-05 22.9 0.2 0.00016 21.2 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|327311201|ref|YP_004338098.1| - 0.0061 15.4 0.0 0.0095 14.8 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain DapB_N PF01113.15 gi|327311201|ref|YP_004338098.1| - 0.015 15.1 0.1 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GTP_cyclohydroI PF01227.17 gi|327311202|ref|YP_004338099.1| - 3.2e-46 156.8 0.0 3.8e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I HMGL-like PF00682.14 gi|327311203|ref|YP_004338100.1| - 6.2e-79 265.0 4.8 7.7e-79 264.6 3.3 1.1 1 0 0 1 1 1 1 HMGL-like F420_ligase PF01996.11 gi|327311203|ref|YP_004338100.1| - 0.012 14.7 0.2 0.017 14.2 0.1 1.3 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase Glyco_hydro_97 PF10566.4 gi|327311203|ref|YP_004338100.1| - 0.017 14.2 0.1 0.038 13.0 0.1 1.4 1 1 0 1 1 1 0 Glycoside hydrolase 97 Pro_dh PF01619.13 gi|327311203|ref|YP_004338100.1| - 0.028 13.4 0.2 0.053 12.5 0.1 1.4 1 0 0 1 1 1 0 Proline dehydrogenase PdxJ PF03740.8 gi|327311203|ref|YP_004338100.1| - 0.031 13.4 0.3 0.065 12.3 0.2 1.5 1 1 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ AP_endonuc_2 PF01261.19 gi|327311203|ref|YP_004338100.1| - 0.034 13.4 4.9 0.037 13.3 1.3 2.3 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Lipase_GDSL_2 PF13472.1 gi|327311203|ref|YP_004338100.1| - 0.12 12.5 0.6 0.18 11.9 0.1 1.6 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Radical_SAM PF04055.16 gi|327311203|ref|YP_004338100.1| - 0.13 12.4 0.4 0.7 10.0 0.2 2.3 2 2 0 2 2 2 0 Radical SAM superfamily Cyclase PF04199.8 gi|327311204|ref|YP_004338101.1| - 9.5e-36 123.0 0.0 1.2e-35 122.7 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Arch_ATPase PF01637.13 gi|327311205|ref|YP_004338102.1| - 2.2e-24 86.4 0.0 3.3e-24 85.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|327311205|ref|YP_004338102.1| - 1.7e-06 27.9 0.0 0.051 13.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|327311205|ref|YP_004338102.1| - 0.0014 18.6 2.5 0.0059 16.6 0.5 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|327311205|ref|YP_004338102.1| - 0.0031 17.6 0.1 0.14 12.3 0.0 2.8 2 1 0 2 2 2 1 AAA domain GIIM PF08388.6 gi|327311205|ref|YP_004338102.1| - 0.12 12.2 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Group II intron, maturase-specific domain Aconitase PF00330.15 gi|327311206|ref|YP_004338103.1| - 8.8e-62 209.0 0.6 5.1e-37 127.4 0.0 2.4 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|327311206|ref|YP_004338103.1| - 0.0052 15.3 0.0 0.008 14.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Trp_oprn_chp PF09534.5 gi|327311207|ref|YP_004338104.1| - 0.097 12.2 1.4 0.12 11.9 1.0 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Cation_efflux PF01545.16 gi|327311207|ref|YP_004338104.1| - 0.46 9.5 4.6 0.58 9.1 3.2 1.2 1 1 0 1 1 1 0 Cation efflux family DUF4229 PF14012.1 gi|327311207|ref|YP_004338104.1| - 5.2 7.0 7.7 3.7 7.5 2.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) CoA_transf_3 PF02515.12 gi|327311208|ref|YP_004338105.1| - 5e-57 192.2 0.0 6.6e-57 191.8 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III CoA_transf_3 PF02515.12 gi|327311209|ref|YP_004338106.1| - 7.4e-29 100.3 0.1 1e-28 99.9 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III CoA_trans PF01144.18 gi|327311210|ref|YP_004338107.1| - 2.2e-37 128.3 1.0 1.7e-33 115.6 0.0 3.1 2 1 0 2 2 2 2 Coenzyme A transferase Polysacc_synt_3 PF13440.1 gi|327311211|ref|YP_004338108.1| - 5.2e-07 29.3 24.9 5.2e-07 29.3 17.2 3.4 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|327311212|ref|YP_004338109.1| - 9.4e-52 175.7 0.1 1.6e-51 174.9 0.0 1.4 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|327311212|ref|YP_004338109.1| - 3.2e-20 72.1 0.0 5.8e-20 71.3 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|327311212|ref|YP_004338109.1| - 8.7e-15 54.1 0.0 1.1e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|327311212|ref|YP_004338109.1| - 1.5e-14 53.5 0.0 1.6e-09 37.0 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|327311212|ref|YP_004338109.1| - 1.9e-14 53.2 0.1 6.1e-13 48.3 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|327311212|ref|YP_004338109.1| - 2.8e-14 53.5 0.1 2.8e-14 53.5 0.1 1.5 2 0 0 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|327311212|ref|YP_004338109.1| - 1.1e-05 25.4 6.2 0.00013 21.9 0.2 3.0 1 1 1 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|327311212|ref|YP_004338109.1| - 0.00089 18.5 0.1 0.0017 17.6 0.0 1.6 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|327311212|ref|YP_004338109.1| - 0.0037 17.2 0.1 0.008 16.1 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|327311212|ref|YP_004338109.1| - 0.0049 16.5 0.9 0.016 14.8 0.1 2.1 1 1 1 2 2 2 1 KR domain F420_oxidored PF03807.12 gi|327311212|ref|YP_004338109.1| - 0.046 14.1 0.0 0.14 12.5 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|327311212|ref|YP_004338109.1| - 0.056 12.8 0.2 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|327311212|ref|YP_004338109.1| - 0.071 12.9 0.1 0.18 11.6 0.0 1.6 2 0 0 2 2 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_trans_4_4 PF13579.1 gi|327311212|ref|YP_004338109.1| - 0.2 11.7 2.9 0.18 11.9 0.8 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain PALP PF00291.20 gi|327311213|ref|YP_004338110.1| - 1.6e-20 73.5 2.6 3.8e-18 65.7 1.8 3.1 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|327311213|ref|YP_004338110.1| - 0.00062 18.8 4.3 0.0012 18.0 3.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|327311213|ref|YP_004338110.1| - 0.024 14.4 0.6 0.041 13.6 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|327311213|ref|YP_004338110.1| - 0.15 11.7 3.6 5.3 6.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|327311213|ref|YP_004338110.1| - 0.18 11.2 1.0 13 5.3 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|327311213|ref|YP_004338110.1| - 0.19 11.3 1.1 12 5.5 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327311213|ref|YP_004338110.1| - 0.34 10.4 7.0 1.4 8.4 4.9 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF1610 PF07754.6 gi|327311213|ref|YP_004338110.1| - 2.5 8.2 8.3 3.2 7.9 1.6 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ISL3 PF14690.1 gi|327311213|ref|YP_004338110.1| - 2.9 8.0 6.0 17 5.5 0.2 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|327311213|ref|YP_004338110.1| - 5.2 6.8 5.7 19 5.0 0.3 2.5 1 1 0 1 1 1 0 zinc-ribbon domain Bac_Ubq_Cox PF01654.12 gi|327311214|ref|YP_004338111.1| - 8.2e-61 205.7 35.7 7.3e-58 196.0 24.7 2.0 1 1 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase Endonuc-BsobI PF09194.5 gi|327311214|ref|YP_004338111.1| - 0.16 10.8 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease BsobI Bac_Ubq_Cox PF01654.12 gi|327311215|ref|YP_004338112.1| - 1.3e-16 60.0 10.8 1.3e-16 60.0 7.5 2.1 2 1 0 2 2 2 1 Bacterial Cytochrome Ubiquinol Oxidase P5-ATPase PF12409.3 gi|327311215|ref|YP_004338112.1| - 0.074 12.9 0.7 0.17 11.7 0.5 1.6 1 0 0 1 1 1 0 P5-type ATPase cation transporter Thermopsin PF05317.6 gi|327311216|ref|YP_004338113.1| - 1.2e-30 106.3 0.0 8.2e-30 103.6 0.0 1.9 1 1 0 1 1 1 1 Thermopsin AhpC-TSA PF00578.16 gi|327311217|ref|YP_004338114.1| - 1.8e-27 95.4 0.0 2.3e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|327311217|ref|YP_004338114.1| - 1.6e-18 66.0 2.1 2.8e-18 65.2 1.4 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|327311217|ref|YP_004338114.1| - 9e-12 44.7 0.0 1.2e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin VIT1 PF01988.14 gi|327311218|ref|YP_004338115.1| - 5.8e-17 61.8 27.1 2.2e-10 40.3 4.5 2.4 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.12 gi|327311218|ref|YP_004338115.1| - 1.6e-07 31.7 0.7 3.7e-07 30.5 0.5 1.6 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.8 gi|327311218|ref|YP_004338115.1| - 0.041 13.3 0.6 0.67 9.4 0.1 2.6 2 1 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Polysacc_synt_3 PF13440.1 gi|327311218|ref|YP_004338115.1| - 2.3 7.6 20.2 1.5 8.2 12.1 2.0 2 1 0 2 2 2 0 Polysaccharide biosynthesis protein YwiC PF14256.1 gi|327311218|ref|YP_004338115.1| - 6 6.9 14.6 0.27 11.3 5.8 2.0 3 0 0 3 3 3 0 YwiC-like protein Ribosomal_S30 PF04758.9 gi|327311222|ref|YP_004338119.1| - 3.2e-07 30.0 3.0 3.8e-07 29.7 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 DUF3811 PF11656.3 gi|327311223|ref|YP_004338120.1| - 0.13 12.3 0.1 0.21 11.6 0.1 1.3 1 0 0 1 1 1 0 YjbD family (DUF3811) Pantoate_transf PF02548.10 gi|327311224|ref|YP_004338121.1| - 1.2e-108 362.2 0.1 1.4e-108 361.9 0.0 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|327311224|ref|YP_004338121.1| - 2.7e-10 39.8 0.8 1.5e-09 37.4 0.5 2.1 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Robl_LC7 PF03259.12 gi|327311224|ref|YP_004338121.1| - 0.01 15.4 0.2 0.057 12.9 0.1 2.0 2 0 0 2 2 2 0 Roadblock/LC7 domain Peptidase_U32 PF01136.14 gi|327311224|ref|YP_004338121.1| - 2.1 7.2 3.9 1.7 7.5 0.0 2.5 3 1 1 4 4 4 0 Peptidase family U32 ApbA_C PF08546.6 gi|327311225|ref|YP_004338122.1| - 2.6e-36 124.3 0.2 3.7e-36 123.8 0.2 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|327311225|ref|YP_004338122.1| - 4e-17 62.0 0.0 1e-16 60.7 0.0 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF137 PF02006.11 gi|327311227|ref|YP_004338124.1| - 7.7e-81 269.7 1.2 9.2e-81 269.4 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 BatD PF13584.1 gi|327311228|ref|YP_004338125.1| - 0.0099 14.5 0.4 0.014 14.0 0.3 1.2 1 0 0 1 1 1 1 Oxygen tolerance Shisa PF13908.1 gi|327311228|ref|YP_004338125.1| - 0.013 15.6 0.4 0.023 14.8 0.2 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Rifin_STEVOR PF02009.11 gi|327311228|ref|YP_004338125.1| - 0.15 11.6 1.9 0.18 11.3 1.3 1.1 1 0 0 1 1 1 0 Rifin/stevor family Herpes_gE PF02480.11 gi|327311228|ref|YP_004338125.1| - 0.19 9.9 0.4 0.27 9.4 0.3 1.2 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E DUF131 PF01998.12 gi|327311228|ref|YP_004338125.1| - 1.2 8.5 5.7 3.1 7.2 4.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF131 KxDL PF10241.4 gi|327311229|ref|YP_004338126.1| - 0.057 13.3 0.7 4.2 7.3 0.0 2.8 2 0 0 2 2 2 0 Uncharacterized conserved protein NPV_P10 PF05531.7 gi|327311229|ref|YP_004338126.1| - 0.095 12.9 1.6 43 4.4 0.1 3.5 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|327311229|ref|YP_004338126.1| - 0.22 10.6 4.3 0.28 10.3 0.5 2.3 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Ribonuc_L-PSP PF01042.16 gi|327311232|ref|YP_004338129.1| - 2.2e-44 150.0 0.1 2.5e-44 149.9 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF1626 PF07788.6 gi|327311233|ref|YP_004338130.1| - 1.3e-11 44.0 0.4 2.6e-11 43.1 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) Nup54 PF13874.1 gi|327311233|ref|YP_004338130.1| - 5.4e-05 22.8 3.9 0.00047 19.8 0.8 2.4 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 CCDC155 PF14662.1 gi|327311233|ref|YP_004338130.1| - 0.00064 19.3 7.0 0.0073 15.9 4.8 2.1 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 Prefoldin_3 PF13758.1 gi|327311233|ref|YP_004338130.1| - 0.0016 18.1 0.9 6.5 6.5 0.0 3.3 1 1 2 3 3 3 0 Prefoldin subunit APG17 PF04108.7 gi|327311233|ref|YP_004338130.1| - 0.0016 17.2 0.4 0.0022 16.8 0.2 1.1 1 0 0 1 1 1 1 Autophagy protein Apg17 SlyX PF04102.7 gi|327311233|ref|YP_004338130.1| - 0.0019 18.5 3.7 0.022 15.0 0.1 2.9 1 1 2 3 3 3 2 SlyX GAS PF13851.1 gi|327311233|ref|YP_004338130.1| - 0.0024 17.0 1.1 0.0044 16.2 0.7 1.4 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding MCPsignal PF00015.16 gi|327311233|ref|YP_004338130.1| - 0.0033 16.9 0.1 0.0053 16.3 0.1 1.3 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|327311233|ref|YP_004338130.1| - 0.0037 17.0 0.0 0.045 13.6 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) Reo_sigmaC PF04582.7 gi|327311233|ref|YP_004338130.1| - 0.004 16.4 0.0 0.0056 15.9 0.0 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Phage_GPO PF05929.6 gi|327311233|ref|YP_004338130.1| - 0.0043 16.3 3.6 0.074 12.2 1.9 2.2 1 1 1 2 2 2 1 Phage capsid scaffolding protein (GPO) serine peptidase YvrJ PF12841.2 gi|327311233|ref|YP_004338130.1| - 0.0044 16.2 0.3 2.6 7.3 0.0 2.5 2 0 0 2 2 2 0 YvrJ protein family DUF2580 PF10824.3 gi|327311233|ref|YP_004338130.1| - 0.0051 17.1 0.1 0.28 11.5 0.1 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF2580) DUF1664 PF07889.7 gi|327311233|ref|YP_004338130.1| - 0.0092 15.7 0.6 0.091 12.5 0.4 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1664) DUF3584 PF12128.3 gi|327311233|ref|YP_004338130.1| - 0.011 13.1 1.5 0.013 12.8 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Arfaptin PF06456.8 gi|327311233|ref|YP_004338130.1| - 0.011 15.0 0.6 0.024 13.9 0.4 1.5 1 1 0 1 1 1 0 Arfaptin-like domain RRF_GI PF12614.3 gi|327311233|ref|YP_004338130.1| - 0.012 15.4 3.3 0.02 14.6 1.1 2.0 1 1 1 2 2 2 0 Ribosome recycling factor Spc7 PF08317.6 gi|327311233|ref|YP_004338130.1| - 0.014 14.0 2.9 0.022 13.4 2.0 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein RsbRD_N PF14361.1 gi|327311233|ref|YP_004338130.1| - 0.017 15.5 2.5 0.12 12.8 0.5 2.3 1 1 1 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain IFT57 PF10498.4 gi|327311233|ref|YP_004338130.1| - 0.019 13.7 0.3 0.026 13.2 0.2 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 ATG16 PF08614.6 gi|327311233|ref|YP_004338130.1| - 0.021 14.6 3.6 0.035 13.9 2.5 1.3 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) MutS_III PF05192.13 gi|327311233|ref|YP_004338130.1| - 0.021 14.6 2.5 0.038 13.7 1.5 1.5 1 1 0 1 1 1 0 MutS domain III Myosin_tail_1 PF01576.14 gi|327311233|ref|YP_004338130.1| - 0.022 12.5 10.1 0.034 11.8 7.0 1.2 1 0 0 1 1 1 0 Myosin tail BLOC1_2 PF10046.4 gi|327311233|ref|YP_004338130.1| - 0.023 14.8 0.1 0.053 13.6 0.1 1.6 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 YPEB PF14620.1 gi|327311233|ref|YP_004338130.1| - 0.024 13.6 1.1 0.045 12.7 0.8 1.5 1 1 0 1 1 1 0 YpeB sporulation DUF16 PF01519.11 gi|327311233|ref|YP_004338130.1| - 0.026 14.7 1.6 0.078 13.2 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF16 Snapin_Pallidin PF14712.1 gi|327311233|ref|YP_004338130.1| - 0.038 14.3 1.1 0.18 12.1 0.5 2.0 1 1 1 2 2 2 0 Snapin/Pallidin AAA_13 PF13166.1 gi|327311233|ref|YP_004338130.1| - 0.04 12.3 0.3 0.05 12.0 0.2 1.1 1 0 0 1 1 1 0 AAA domain IncA PF04156.9 gi|327311233|ref|YP_004338130.1| - 0.04 13.5 8.2 0.086 12.4 5.7 1.6 1 1 0 1 1 1 0 IncA protein GP41 PF00517.12 gi|327311233|ref|YP_004338130.1| - 0.043 13.3 0.1 0.069 12.7 0.1 1.3 1 0 0 1 1 1 0 Retroviral envelope protein Transposase_22 PF02994.9 gi|327311233|ref|YP_004338130.1| - 0.054 11.9 3.7 0.074 11.5 2.5 1.2 1 0 0 1 1 1 0 L1 transposable element Laminin_II PF06009.7 gi|327311233|ref|YP_004338130.1| - 0.06 13.1 0.5 0.11 12.2 0.3 1.6 1 0 0 1 1 1 0 Laminin Domain II DUF342 PF03961.8 gi|327311233|ref|YP_004338130.1| - 0.079 11.3 0.8 0.12 10.8 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) SNARE PF05739.14 gi|327311233|ref|YP_004338130.1| - 0.079 12.6 1.9 0.54 9.9 0.2 2.9 2 1 0 2 2 2 0 SNARE domain DUF4446 PF14584.1 gi|327311233|ref|YP_004338130.1| - 0.13 12.1 2.0 0.98 9.2 0.6 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) DUF4298 PF14131.1 gi|327311233|ref|YP_004338130.1| - 0.13 12.1 0.6 5.9 6.8 0.2 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4298) TMF_DNA_bd PF12329.3 gi|327311233|ref|YP_004338130.1| - 0.14 11.9 7.9 0.25 11.1 4.1 2.4 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding V_ATPase_I PF01496.14 gi|327311233|ref|YP_004338130.1| - 0.16 9.7 1.4 0.2 9.4 0.9 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4559 PF15112.1 gi|327311233|ref|YP_004338130.1| - 0.25 10.4 1.8 0.36 9.9 1.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) HemX PF04375.9 gi|327311233|ref|YP_004338130.1| - 0.27 9.8 2.5 0.42 9.1 1.7 1.3 1 0 0 1 1 1 0 HemX APG6 PF04111.7 gi|327311233|ref|YP_004338130.1| - 0.3 10.0 3.5 0.38 9.7 2.4 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 HAUS-augmin3 PF14932.1 gi|327311233|ref|YP_004338130.1| - 0.3 10.2 3.4 0.52 9.4 2.4 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Laminin_I PF06008.9 gi|327311233|ref|YP_004338130.1| - 0.35 10.1 7.0 1 8.6 0.2 2.2 1 1 1 2 2 2 0 Laminin Domain I KxDL PF10241.4 gi|327311233|ref|YP_004338130.1| - 0.43 10.4 3.4 1 9.2 0.8 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein Prefoldin_2 PF01920.15 gi|327311233|ref|YP_004338130.1| - 0.44 10.3 5.6 0.94 9.2 2.9 2.2 1 1 1 2 2 1 0 Prefoldin subunit Erythro-docking PF09277.6 gi|327311233|ref|YP_004338130.1| - 0.46 10.2 8.9 12 5.6 0.4 3.9 2 2 1 3 3 3 0 Erythronolide synthase, docking TPR_MLP1_2 PF07926.7 gi|327311233|ref|YP_004338130.1| - 0.47 10.1 5.5 0.85 9.3 3.3 1.8 1 1 1 2 2 1 0 TPR/MLP1/MLP2-like protein Atg14 PF10186.4 gi|327311233|ref|YP_004338130.1| - 0.53 9.1 4.2 0.76 8.6 2.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 FlgN PF05130.7 gi|327311233|ref|YP_004338130.1| - 0.72 10.1 7.9 2.2 8.5 5.5 1.8 1 1 0 1 1 1 0 FlgN protein Aldedh PF00171.17 gi|327311233|ref|YP_004338130.1| - 0.82 7.9 2.8 1.2 7.4 2.0 1.2 1 0 0 1 1 1 0 Aldehyde dehydrogenase family Fmp27_WPPW PF10359.4 gi|327311233|ref|YP_004338130.1| - 0.96 7.7 4.3 1.2 7.4 3.0 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain zf-C4H2 PF10146.4 gi|327311233|ref|YP_004338130.1| - 1.2 9.1 5.2 1.9 8.4 3.6 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein Cep57_MT_bd PF06657.8 gi|327311233|ref|YP_004338130.1| - 1.4 8.9 5.7 1 9.3 1.9 2.1 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 TMF_TATA_bd PF12325.3 gi|327311233|ref|YP_004338130.1| - 1.7 8.4 11.5 24 4.6 8.0 2.3 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF745 PF05335.8 gi|327311233|ref|YP_004338130.1| - 3.1 7.2 8.2 0.68 9.4 2.8 1.8 2 1 0 2 2 1 0 Protein of unknown function (DUF745) Spectrin PF00435.16 gi|327311233|ref|YP_004338130.1| - 3.8 7.8 9.2 3.3 8.0 4.3 2.4 2 1 0 2 2 1 0 Spectrin repeat Seryl_tRNA_N PF02403.17 gi|327311233|ref|YP_004338130.1| - 4.8 7.2 9.3 47 4.0 0.0 3.0 3 1 0 3 3 2 0 Seryl-tRNA synthetase N-terminal domain GTP_EFTU PF00009.22 gi|327311234|ref|YP_004338131.1| - 5.5e-54 182.4 0.0 8.5e-54 181.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|327311234|ref|YP_004338131.1| - 1.9e-30 104.9 0.3 2.1e-29 101.5 0.0 2.8 2 1 2 4 4 4 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|327311234|ref|YP_004338131.1| - 4.1e-20 71.6 3.5 1.7e-19 69.6 1.8 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|327311234|ref|YP_004338131.1| - 1.5e-11 43.7 0.7 3.8e-11 42.4 0.5 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|327311234|ref|YP_004338131.1| - 6.6e-05 22.8 0.0 0.00014 21.7 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|327311234|ref|YP_004338131.1| - 0.00011 21.5 0.7 0.0013 18.0 0.2 2.7 2 1 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|327311234|ref|YP_004338131.1| - 0.0024 18.3 0.0 0.0098 16.3 0.0 2.0 1 1 0 1 1 1 1 Miro-like protein Septin PF00735.13 gi|327311234|ref|YP_004338131.1| - 0.021 13.8 0.0 0.047 12.6 0.0 1.6 1 0 0 1 1 1 0 Septin Dynamin_N PF00350.18 gi|327311234|ref|YP_004338131.1| - 0.079 12.7 0.1 7.7 6.3 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Ras PF00071.17 gi|327311234|ref|YP_004338131.1| - 0.16 11.3 0.2 0.78 9.1 0.0 2.1 2 1 0 2 2 2 0 Ras family Ribosomal_S10 PF00338.17 gi|327311235|ref|YP_004338132.1| - 1e-27 95.8 0.0 1.1e-27 95.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Ribosomal_L11 PF00298.14 gi|327311235|ref|YP_004338132.1| - 0.058 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11, RNA binding domain MFS_1 PF07690.11 gi|327311236|ref|YP_004338133.1| - 3.3e-21 75.3 56.1 5.5e-16 58.2 10.2 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Radical_SAM PF04055.16 gi|327311237|ref|YP_004338134.1| - 7e-06 26.3 0.0 1.4e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|327311237|ref|YP_004338134.1| - 0.001 19.1 0.0 0.0018 18.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|327311237|ref|YP_004338134.1| - 0.0023 17.9 0.0 0.0041 17.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ebola_NP PF05505.7 gi|327311238|ref|YP_004338135.1| - 0.1 10.6 0.2 0.13 10.2 0.1 1.1 1 0 0 1 1 1 0 Ebola nucleoprotein SpoIIIAC PF06686.6 gi|327311238|ref|YP_004338135.1| - 1.5 8.6 7.5 6.6 6.6 0.5 3.0 2 0 0 2 2 2 0 Stage III sporulation protein AC/AD protein family Translin PF01997.11 gi|327311240|ref|YP_004338137.1| - 5.1e-33 114.3 0.3 6.2e-33 114.0 0.2 1.1 1 0 0 1 1 1 1 Translin family MbeD_MobD PF04899.7 gi|327311240|ref|YP_004338137.1| - 0.044 13.6 0.0 12 5.9 0.0 2.8 2 1 0 2 2 2 0 MbeD/MobD like Amidase PF01425.16 gi|327311241|ref|YP_004338138.1| - 2.5e-94 316.6 4.8 5.1e-94 315.6 3.3 1.4 1 1 0 1 1 1 1 Amidase Lactamase_B PF00753.22 gi|327311242|ref|YP_004338139.1| - 9.4e-13 48.2 7.5 1.8e-12 47.3 5.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|327311242|ref|YP_004338139.1| - 7.8e-06 25.6 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|327311242|ref|YP_004338139.1| - 2.9e-05 23.7 0.4 4.1e-05 23.2 0.3 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HEPN PF05168.9 gi|327311243|ref|YP_004338140.1| - 5.8e-20 71.3 0.2 7.3e-20 71.0 0.2 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|327311244|ref|YP_004338141.1| - 9.9e-09 35.4 0.0 1.2e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|327311244|ref|YP_004338141.1| - 0.055 13.0 0.0 0.097 12.2 0.0 1.5 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HAD_2 PF13419.1 gi|327311245|ref|YP_004338142.1| - 2.9e-22 79.7 0.0 3.5e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|327311245|ref|YP_004338142.1| - 1.3e-09 38.5 0.0 1.6e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|327311245|ref|YP_004338142.1| - 1.7e-09 38.4 0.3 1.8e-07 31.7 0.2 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|327311245|ref|YP_004338142.1| - 6.4e-09 35.4 0.0 1.2e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.7 gi|327311245|ref|YP_004338142.1| - 0.066 12.7 0.0 3.7 7.0 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|327311245|ref|YP_004338142.1| - 0.14 11.4 0.0 4.4 6.5 0.0 2.5 3 0 0 3 3 3 0 Sucrose-6F-phosphate phosphohydrolase Usp PF00582.21 gi|327311246|ref|YP_004338143.1| - 4.8e-39 133.7 2.0 5.4e-39 133.5 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|327311246|ref|YP_004338143.1| - 0.00032 20.0 0.2 0.0057 15.9 0.1 2.0 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel CBS PF00571.23 gi|327311248|ref|YP_004338145.1| - 1.2e-29 101.7 6.1 2.3e-14 52.8 0.6 2.1 2 0 0 2 2 2 2 CBS domain DUF2786 PF10979.3 gi|327311248|ref|YP_004338145.1| - 0.048 13.3 0.1 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) Vps39_2 PF10367.4 gi|327311249|ref|YP_004338146.1| - 0.044 13.9 0.2 0.069 13.3 0.2 1.3 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 AAA_13 PF13166.1 gi|327311249|ref|YP_004338146.1| - 0.06 11.8 0.0 0.06 11.8 0.0 1.0 1 0 0 1 1 1 0 AAA domain SlyX PF04102.7 gi|327311249|ref|YP_004338146.1| - 0.061 13.7 0.4 15 5.9 0.0 2.6 1 1 1 2 2 2 0 SlyX TMEM95 PF15203.1 gi|327311249|ref|YP_004338146.1| - 0.15 11.4 0.5 0.21 10.9 0.4 1.2 1 0 0 1 1 1 0 TMEM95 family PhoU PF01895.14 gi|327311250|ref|YP_004338147.1| - 3.6e-08 33.7 0.9 1.8e-07 31.5 0.0 2.3 2 1 0 2 2 2 1 PhoU domain MoCF_biosynth PF00994.19 gi|327311251|ref|YP_004338148.1| - 2.3e-29 101.6 0.2 2.7e-29 101.4 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Nuc_deoxyrib_tr PF05014.10 gi|327311252|ref|YP_004338149.1| - 0.00032 20.5 0.0 0.00044 20.1 0.0 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Lysine_decarbox PF03641.9 gi|327311252|ref|YP_004338149.1| - 0.00081 19.2 0.1 0.0015 18.3 0.1 1.6 1 1 0 1 1 1 1 Possible lysine decarboxylase DUF128 PF01995.11 gi|327311252|ref|YP_004338149.1| - 0.073 12.0 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF128 PfkB PF00294.19 gi|327311254|ref|YP_004338151.1| - 1.7e-51 175.1 0.1 2.2e-51 174.8 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|327311254|ref|YP_004338151.1| - 0.071 12.3 0.0 0.14 11.3 0.0 1.5 1 1 0 1 1 1 0 Phosphomethylpyrimidine kinase Peptidase_M24 PF00557.19 gi|327311255|ref|YP_004338152.1| - 2.2e-38 131.8 0.0 2.8e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|327311255|ref|YP_004338152.1| - 1.3e-10 41.8 0.0 2.4e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Abi PF02517.11 gi|327311256|ref|YP_004338153.1| - 2.4e-13 49.9 4.3 2.4e-13 49.9 3.0 2.3 2 1 0 2 2 2 1 CAAX protease self-immunity AAA_16 PF13191.1 gi|327311257|ref|YP_004338154.1| - 0.0021 18.0 0.0 0.0078 16.2 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|327311257|ref|YP_004338154.1| - 0.0023 18.1 0.0 0.018 15.2 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|327311257|ref|YP_004338154.1| - 0.0084 15.8 0.0 0.05 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|327311257|ref|YP_004338154.1| - 0.02 14.7 0.0 0.24 11.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|327311257|ref|YP_004338154.1| - 0.023 14.8 0.0 0.12 12.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|327311257|ref|YP_004338154.1| - 0.048 12.6 0.0 0.19 10.7 0.0 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|327311257|ref|YP_004338154.1| - 0.12 11.7 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|327311257|ref|YP_004338154.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 KaiC DUF2201_N PF13203.1 gi|327311258|ref|YP_004338155.1| - 4.8e-19 68.6 3.2 3.5e-17 62.5 2.2 2.1 1 1 0 1 1 1 1 Putative metallopeptidase domain DUF2201 PF09967.4 gi|327311258|ref|YP_004338155.1| - 8.8e-13 48.3 0.0 2.2e-12 47.1 0.0 1.6 2 0 0 2 2 2 1 VWA-like domain (DUF2201) VWA PF00092.23 gi|327311258|ref|YP_004338155.1| - 1.8e-06 27.8 0.0 2.9e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|327311258|ref|YP_004338155.1| - 0.0018 17.4 1.5 0.008 15.3 1.0 2.0 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein Peptidase_M48 PF01435.13 gi|327311258|ref|YP_004338155.1| - 0.0076 15.8 0.8 0.016 14.7 0.5 1.5 1 1 0 1 1 1 1 Peptidase family M48 RNase_P_p30 PF01876.11 gi|327311258|ref|YP_004338155.1| - 0.079 12.2 0.0 0.63 9.2 0.0 2.1 2 0 0 2 2 2 0 RNase P subunit p30 PLDc_2 PF13091.1 gi|327311259|ref|YP_004338156.1| - 2.5e-16 59.5 0.0 3.6e-10 39.6 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain UPF0104 PF03706.8 gi|327311259|ref|YP_004338156.1| - 0.0059 15.9 4.6 0.0083 15.4 3.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF2029 PF09594.5 gi|327311259|ref|YP_004338156.1| - 0.01 15.3 8.1 0.023 14.1 5.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2029) PLDc PF00614.17 gi|327311259|ref|YP_004338156.1| - 0.014 15.1 0.0 0.035 13.9 0.0 1.7 1 0 0 1 1 1 0 Phospholipase D Active site motif DUF1320 PF07030.7 gi|327311259|ref|YP_004338156.1| - 0.083 12.6 4.0 0.15 11.7 2.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1320) Col_cuticle_N PF01484.12 gi|327311260|ref|YP_004338157.1| - 2.4 7.8 4.4 2.4 7.9 1.0 2.0 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain TPPK_C PF12555.3 gi|327311260|ref|YP_004338157.1| - 3.4 7.4 6.7 0.75 9.5 0.6 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Ribosomal_S4e PF00900.15 gi|327311261|ref|YP_004338158.1| - 6e-23 80.3 0.0 1.1e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|327311261|ref|YP_004338158.1| - 2.6e-11 43.1 5.8 2.6e-11 43.1 4.0 1.6 2 0 0 2 2 2 1 RS4NT (NUC023) domain S4 PF01479.20 gi|327311261|ref|YP_004338158.1| - 3.2e-09 36.0 0.4 7.3e-09 34.9 0.3 1.7 1 0 0 1 1 1 1 S4 domain Cys_Met_Meta_PP PF01053.15 gi|327311263|ref|YP_004338160.1| - 5.1e-114 380.5 0.0 5.7e-114 380.3 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|327311263|ref|YP_004338160.1| - 2.7e-05 23.0 0.0 3.6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|327311263|ref|YP_004338160.1| - 0.00036 19.5 0.0 0.00058 18.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II B12-binding PF02310.14 gi|327311263|ref|YP_004338160.1| - 0.0019 18.0 0.1 0.0054 16.5 0.0 1.8 1 0 0 1 1 1 1 B12 binding domain DegT_DnrJ_EryC1 PF01041.12 gi|327311263|ref|YP_004338160.1| - 0.0045 16.0 0.5 0.0075 15.3 0.3 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family GDC-P PF02347.11 gi|327311263|ref|YP_004338160.1| - 0.0083 14.8 0.1 0.011 14.4 0.1 1.1 1 0 0 1 1 1 1 Glycine cleavage system P-protein Met_gamma_lyase PF06838.6 gi|327311263|ref|YP_004338160.1| - 0.011 14.1 0.1 0.021 13.1 0.0 1.5 1 1 0 1 1 1 0 Methionine gamma-lyase PfkB PF00294.19 gi|327311264|ref|YP_004338161.1| - 2.3e-13 49.9 0.0 6.1e-10 38.7 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|327311264|ref|YP_004338161.1| - 0.076 12.1 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase CBS PF00571.23 gi|327311265|ref|YP_004338162.1| - 1.7e-31 107.7 5.7 4.4e-17 61.5 0.8 3.2 4 0 0 4 4 4 2 CBS domain HrcA_DNA-bdg PF03444.10 gi|327311265|ref|YP_004338162.1| - 1e-30 104.9 0.1 1.9e-30 104.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|327311265|ref|YP_004338162.1| - 8.5e-12 45.0 0.1 3.8e-11 42.9 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|327311265|ref|YP_004338162.1| - 0.00049 19.6 1.1 0.001 18.6 0.0 2.2 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|327311265|ref|YP_004338162.1| - 0.00079 19.0 0.4 0.0073 15.9 0.3 2.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|327311265|ref|YP_004338162.1| - 0.0043 16.9 0.1 0.0091 15.9 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rio2_N PF09202.6 gi|327311265|ref|YP_004338162.1| - 0.026 14.5 0.0 0.052 13.6 0.0 1.5 1 0 0 1 1 1 0 Rio2, N-terminal MarR PF01047.17 gi|327311265|ref|YP_004338162.1| - 0.08 12.6 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|327311265|ref|YP_004338162.1| - 0.1 12.2 0.0 0.31 10.7 0.0 1.9 1 0 0 1 1 1 0 MarR family 2-Hacid_dh_C PF02826.14 gi|327311266|ref|YP_004338163.1| - 5.3e-55 185.3 0.0 7e-55 184.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|327311266|ref|YP_004338163.1| - 6.8e-31 106.4 0.0 8.7e-31 106.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|327311266|ref|YP_004338163.1| - 6.7e-05 22.7 0.0 0.0003 20.6 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|327311266|ref|YP_004338163.1| - 0.00064 19.5 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|327311266|ref|YP_004338163.1| - 0.00078 18.8 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|327311266|ref|YP_004338163.1| - 0.0015 18.8 0.1 0.0053 17.1 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|327311266|ref|YP_004338163.1| - 0.007 16.0 0.2 0.014 15.0 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|327311266|ref|YP_004338163.1| - 0.0071 15.8 0.1 0.054 13.0 0.1 2.2 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Gp_dh_N PF00044.19 gi|327311266|ref|YP_004338163.1| - 0.015 15.2 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|327311266|ref|YP_004338163.1| - 0.081 12.9 1.6 0.14 12.1 0.1 2.2 3 0 0 3 3 3 0 TrkA-N domain Aminotran_5 PF00266.14 gi|327311267|ref|YP_004338164.1| - 4.1e-22 78.4 0.0 4.9e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|327311267|ref|YP_004338164.1| - 4e-06 25.3 0.0 5.8e-06 24.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.14 gi|327311267|ref|YP_004338164.1| - 0.092 11.0 0.0 0.13 10.5 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DUF89 PF01937.14 gi|327311268|ref|YP_004338165.1| - 1.4e-10 40.4 0.0 1.4e-07 30.6 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function DUF89 DUF904 PF06005.7 gi|327311269|ref|YP_004338166.1| - 2.3e-05 24.6 0.2 4.4e-05 23.6 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF904) PCRF PF03462.13 gi|327311269|ref|YP_004338166.1| - 0.0055 16.3 0.5 0.011 15.4 0.1 1.6 2 0 0 2 2 2 1 PCRF domain GAS PF13851.1 gi|327311269|ref|YP_004338166.1| - 0.0058 15.8 0.5 0.0087 15.2 0.3 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Prefoldin PF02996.12 gi|327311269|ref|YP_004338166.1| - 0.0065 16.1 0.3 0.035 13.7 0.1 2.1 2 1 1 3 3 3 2 Prefoldin subunit HAUS-augmin3 PF14932.1 gi|327311269|ref|YP_004338166.1| - 0.0084 15.3 0.8 0.012 14.8 0.4 1.3 1 1 0 1 1 1 1 HAUS augmin-like complex subunit 3 DivIC PF04977.10 gi|327311269|ref|YP_004338166.1| - 0.0084 15.5 0.7 0.012 15.0 0.5 1.3 1 0 0 1 1 1 1 Septum formation initiator HHH_8 PF14716.1 gi|327311269|ref|YP_004338166.1| - 0.013 15.7 0.1 0.031 14.4 0.1 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF4200 PF13863.1 gi|327311269|ref|YP_004338166.1| - 0.018 15.0 0.4 0.025 14.5 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DUF948 PF06103.6 gi|327311269|ref|YP_004338166.1| - 0.018 14.8 0.2 0.045 13.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) FliJ PF02050.11 gi|327311269|ref|YP_004338166.1| - 0.039 14.0 0.1 0.063 13.3 0.1 1.4 1 0 0 1 1 1 0 Flagellar FliJ protein Sec8_exocyst PF04048.9 gi|327311269|ref|YP_004338166.1| - 0.043 13.4 0.3 1.7 8.2 0.0 2.1 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain Herpes_UL36 PF03586.8 gi|327311269|ref|YP_004338166.1| - 0.047 12.7 0.2 5.1 6.1 0.0 2.0 2 0 0 2 2 2 0 Herpesvirus UL36 tegument protein Tropomyosin PF00261.15 gi|327311269|ref|YP_004338166.1| - 0.048 12.7 2.0 0.057 12.5 0.9 1.4 2 0 0 2 2 2 0 Tropomyosin Laminin_I PF06008.9 gi|327311269|ref|YP_004338166.1| - 0.054 12.7 0.1 0.078 12.2 0.1 1.2 1 0 0 1 1 1 0 Laminin Domain I IncA PF04156.9 gi|327311269|ref|YP_004338166.1| - 0.056 13.0 0.6 0.081 12.5 0.4 1.2 1 0 0 1 1 1 0 IncA protein DUF4618 PF15397.1 gi|327311269|ref|YP_004338166.1| - 0.089 12.1 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) DUF3837 PF12939.2 gi|327311269|ref|YP_004338166.1| - 0.11 12.4 0.1 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) bZIP_1 PF00170.16 gi|327311269|ref|YP_004338166.1| - 0.12 12.3 1.7 0.19 11.6 1.2 1.3 1 0 0 1 1 1 0 bZIP transcription factor BLOC1_2 PF10046.4 gi|327311269|ref|YP_004338166.1| - 0.14 12.3 1.1 0.24 11.5 0.2 1.7 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CASP_C PF08172.7 gi|327311269|ref|YP_004338166.1| - 0.14 11.1 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 CASP C terminal TMF_DNA_bd PF12329.3 gi|327311269|ref|YP_004338166.1| - 0.17 11.7 3.1 0.29 10.9 2.1 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF1192 PF06698.6 gi|327311269|ref|YP_004338166.1| - 1.6 8.6 4.5 0.86 9.4 1.2 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1192) tRNA_NucTransf2 PF09249.6 gi|327311270|ref|YP_004338167.1| - 1.5e-44 150.4 0.0 2.3e-44 149.8 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|327311270|ref|YP_004338167.1| - 6.7e-14 51.9 0.1 1.5e-13 50.9 0.1 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|327311271|ref|YP_004338168.1| - 5.3e-28 96.8 0.9 3.2e-16 59.0 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|327311271|ref|YP_004338168.1| - 3.1e-15 56.2 0.0 3.8e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|327311271|ref|YP_004338168.1| - 4.4e-12 46.1 0.0 8.2e-12 45.2 0.0 1.3 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain CPDase PF07823.6 gi|327311271|ref|YP_004338168.1| - 0.018 14.5 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 Cyclic phosphodiesterase-like protein HVSL PF09749.4 gi|327311271|ref|YP_004338168.1| - 0.15 11.0 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein MarR PF01047.17 gi|327311272|ref|YP_004338169.1| - 0.00015 21.3 0.0 0.00061 19.4 0.0 2.0 3 0 0 3 3 3 1 MarR family HTH_27 PF13463.1 gi|327311272|ref|YP_004338169.1| - 0.00029 21.0 0.1 0.00045 20.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|327311272|ref|YP_004338169.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.7 gi|327311272|ref|YP_004338169.1| - 0.014 15.2 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.14 gi|327311272|ref|YP_004338169.1| - 0.033 13.8 0.3 0.26 11.0 0.1 2.1 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|327311272|ref|YP_004338169.1| - 0.035 14.1 0.1 0.052 13.6 0.0 1.4 1 1 0 1 1 1 0 Penicillinase repressor PadR PF03551.9 gi|327311272|ref|YP_004338169.1| - 0.037 13.7 0.2 0.11 12.2 0.1 1.8 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Sulfolobus_pRN PF05584.6 gi|327311272|ref|YP_004338169.1| - 1 9.3 4.1 0.34 10.9 0.5 2.0 2 1 0 2 2 2 0 Sulfolobus plasmid regulatory protein Cren7 PF11520.3 gi|327311274|ref|YP_004338171.1| - 3.2e-21 74.6 2.6 3.2e-21 74.6 1.8 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 TF_Zn_Ribbon PF08271.7 gi|327311275|ref|YP_004338172.1| - 1e-13 50.3 1.6 1.5e-13 49.8 1.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.14 gi|327311275|ref|YP_004338172.1| - 5.8e-12 45.2 0.2 8e-06 25.5 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat zinc_ribbon_2 PF13240.1 gi|327311275|ref|YP_004338172.1| - 0.00077 18.8 0.4 0.0015 17.9 0.3 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327311275|ref|YP_004338172.1| - 0.0012 17.9 3.8 0.0036 16.4 2.7 1.7 1 1 0 1 1 1 1 zinc-ribbon domain RRN7 PF11781.3 gi|327311275|ref|YP_004338172.1| - 0.0036 16.7 0.7 0.0068 15.8 0.5 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 OrfB_Zn_ribbon PF07282.6 gi|327311275|ref|YP_004338172.1| - 0.0068 16.0 1.0 0.017 14.8 0.4 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|327311275|ref|YP_004338172.1| - 0.0087 15.4 0.6 0.85 9.1 0.0 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain ArfGap PF01412.13 gi|327311275|ref|YP_004338172.1| - 0.019 14.7 0.1 0.031 14.0 0.1 1.3 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf DZR PF12773.2 gi|327311275|ref|YP_004338172.1| - 0.024 14.4 0.3 0.052 13.3 0.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon FmrO PF07091.6 gi|327311275|ref|YP_004338172.1| - 0.038 12.9 0.0 0.061 12.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DUF2387 PF09526.5 gi|327311275|ref|YP_004338172.1| - 0.077 12.9 0.8 0.16 11.9 0.6 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-tcix PF14952.1 gi|327311275|ref|YP_004338172.1| - 0.12 11.7 1.9 5.1 6.5 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_5 PF13719.1 gi|327311275|ref|YP_004338172.1| - 0.13 11.8 1.7 0.3 10.6 1.2 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|327311275|ref|YP_004338172.1| - 0.17 11.7 0.7 0.31 10.8 0.5 1.5 1 0 0 1 1 1 0 Cysteine-rich CPXCG Zn-ribbon_8 PF09723.5 gi|327311275|ref|YP_004338172.1| - 0.2 11.6 0.9 0.52 10.2 0.6 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_S27e PF01667.12 gi|327311275|ref|YP_004338172.1| - 0.21 11.1 1.4 0.34 10.4 0.9 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 zinc_ribbon_4 PF13717.1 gi|327311275|ref|YP_004338172.1| - 0.25 11.0 1.6 0.77 9.5 1.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|327311275|ref|YP_004338172.1| - 0.25 11.0 2.2 4.3 7.1 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Trm112p PF03966.11 gi|327311275|ref|YP_004338172.1| - 0.34 11.3 1.4 20 5.6 0.1 2.6 1 1 1 2 2 2 0 Trm112p-like protein Nudix_N_2 PF14803.1 gi|327311275|ref|YP_004338172.1| - 0.59 9.8 2.9 18 5.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal Prok-RING_1 PF14446.1 gi|327311275|ref|YP_004338172.1| - 1.8 8.3 5.8 23 4.7 4.0 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Gar1 PF04410.9 gi|327311276|ref|YP_004338173.1| - 0.0054 16.1 0.0 0.0059 16.0 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region RsgI_N PF12791.2 gi|327311276|ref|YP_004338173.1| - 0.028 14.0 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 Anti-sigma factor N-terminus Ribosomal_S8e PF01201.17 gi|327311277|ref|YP_004338174.1| - 4.2e-29 101.3 0.9 4.9e-29 101.1 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.12 gi|327311278|ref|YP_004338175.1| - 5.3e-20 71.7 0.1 6.9e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 SRP19 protein LAGLIDADG_3 PF14528.1 gi|327311278|ref|YP_004338175.1| - 0.029 14.6 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 LAGLIDADG-like domain ATP_bind_1 PF03029.12 gi|327311279|ref|YP_004338176.1| - 1.6e-56 191.5 0.0 1.8e-56 191.3 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|327311279|ref|YP_004338176.1| - 1.3e-08 34.4 0.0 1.6e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.22 gi|327311279|ref|YP_004338176.1| - 6e-08 32.3 0.0 8.9e-07 28.5 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|327311279|ref|YP_004338176.1| - 3.8e-07 29.1 0.0 3.7e-06 25.9 0.0 2.2 2 0 0 2 2 2 1 ArgK protein MobB PF03205.9 gi|327311279|ref|YP_004338176.1| - 5.9e-07 29.2 0.0 7.5e-06 25.6 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|327311279|ref|YP_004338176.1| - 2.2e-06 27.6 0.0 4.1e-06 26.7 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|327311279|ref|YP_004338176.1| - 5e-06 26.1 0.0 8.7e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain cobW PF02492.14 gi|327311279|ref|YP_004338176.1| - 1.6e-05 24.4 0.0 0.0087 15.5 0.0 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|327311279|ref|YP_004338176.1| - 4.3e-05 24.3 0.0 0.00015 22.5 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|327311279|ref|YP_004338176.1| - 0.00013 21.5 0.0 0.00094 18.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|327311279|ref|YP_004338176.1| - 0.00019 20.6 0.0 0.00027 20.0 0.0 1.5 1 1 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.17 gi|327311279|ref|YP_004338176.1| - 0.0002 20.8 0.0 0.002 17.5 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|327311279|ref|YP_004338176.1| - 0.0012 18.8 0.0 0.0018 18.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|327311279|ref|YP_004338176.1| - 0.0019 17.6 0.0 0.0041 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|327311279|ref|YP_004338176.1| - 0.0022 17.5 0.0 1.1 8.7 0.0 3.3 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.1 gi|327311279|ref|YP_004338176.1| - 0.0022 17.8 0.0 0.0045 16.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|327311279|ref|YP_004338176.1| - 0.0039 17.4 0.0 0.0058 16.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter APS_kinase PF01583.15 gi|327311279|ref|YP_004338176.1| - 0.0043 16.7 0.0 0.008 15.8 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Gtr1_RagA PF04670.7 gi|327311279|ref|YP_004338176.1| - 0.0052 15.9 0.0 0.27 10.3 0.0 2.0 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region DUF87 PF01935.12 gi|327311279|ref|YP_004338176.1| - 0.0055 16.5 0.0 0.016 15.0 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|327311279|ref|YP_004338176.1| - 0.0061 16.6 0.0 0.016 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|327311279|ref|YP_004338176.1| - 0.0086 15.3 0.0 0.015 14.4 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|327311279|ref|YP_004338176.1| - 0.01 15.8 0.1 0.036 14.0 0.0 1.9 2 1 0 2 2 1 0 AAA domain NTPase_1 PF03266.10 gi|327311279|ref|YP_004338176.1| - 0.01 15.5 0.0 0.48 10.1 0.0 2.6 2 1 1 3 3 3 0 NTPase TrwB_AAD_bind PF10412.4 gi|327311279|ref|YP_004338176.1| - 0.012 14.3 0.0 0.017 13.7 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NB-ARC PF00931.17 gi|327311279|ref|YP_004338176.1| - 0.017 13.9 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain T2SE PF00437.15 gi|327311279|ref|YP_004338176.1| - 0.026 13.4 0.0 0.039 12.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|327311279|ref|YP_004338176.1| - 0.027 13.6 0.0 0.18 10.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DUF815 PF05673.8 gi|327311279|ref|YP_004338176.1| - 0.028 13.3 0.0 0.044 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Thymidylate_kin PF02223.12 gi|327311279|ref|YP_004338176.1| - 0.036 13.4 0.0 0.061 12.6 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase Miro PF08477.8 gi|327311279|ref|YP_004338176.1| - 0.051 14.0 0.1 0.31 11.5 0.1 2.2 1 1 0 1 1 1 0 Miro-like protein AAA_18 PF13238.1 gi|327311279|ref|YP_004338176.1| - 0.065 13.5 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|327311279|ref|YP_004338176.1| - 0.069 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|327311279|ref|YP_004338176.1| - 0.074 12.7 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Dynamin_N PF00350.18 gi|327311279|ref|YP_004338176.1| - 0.085 12.6 0.1 5.9 6.6 0.1 2.2 2 0 0 2 2 2 0 Dynamin family MipZ PF09140.6 gi|327311279|ref|YP_004338176.1| - 0.13 11.2 0.0 0.26 10.3 0.0 1.5 2 0 0 2 2 1 0 ATPase MipZ Methyltransf_32 PF13679.1 gi|327311279|ref|YP_004338176.1| - 0.17 11.5 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ribosomal_L21e PF01157.13 gi|327311280|ref|YP_004338177.1| - 2.8e-23 81.6 0.9 3.1e-23 81.4 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|327311281|ref|YP_004338178.1| - 9e-13 48.2 0.5 1.2e-12 47.9 0.3 1.2 1 1 0 1 1 1 1 RNA polymerase Rpb4 DUF3770 PF12603.3 gi|327311281|ref|YP_004338178.1| - 0.023 13.8 0.4 0.14 11.2 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3770) V-ATPase_H_N PF03224.9 gi|327311281|ref|YP_004338178.1| - 0.045 12.8 0.8 0.079 12.0 0.3 1.5 1 1 0 1 1 1 0 V-ATPase subunit H MerR_1 PF13411.1 gi|327311281|ref|YP_004338178.1| - 0.059 13.1 0.1 0.31 10.8 0.0 2.2 2 1 0 2 2 2 0 MerR HTH family regulatory protein DUF655 PF04919.7 gi|327311282|ref|YP_004338179.1| - 2.3e-54 183.8 0.2 2.6e-54 183.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|327311282|ref|YP_004338179.1| - 3.6e-06 26.9 0.2 1.5e-05 24.9 0.0 2.0 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|327311282|ref|YP_004338179.1| - 0.00019 21.3 0.1 0.00048 20.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif GatB_Yqey PF02637.13 gi|327311282|ref|YP_004338179.1| - 0.032 13.9 0.4 1.6 8.4 0.0 2.1 1 1 1 2 2 2 0 GatB domain HHH PF00633.18 gi|327311282|ref|YP_004338179.1| - 0.049 13.3 0.9 0.47 10.2 0.0 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix motif eIF-5a PF01287.15 gi|327311283|ref|YP_004338180.1| - 3.7e-15 55.6 0.7 6.2e-15 54.9 0.5 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|327311283|ref|YP_004338180.1| - 9.3e-07 28.6 0.0 2.1e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|327311283|ref|YP_004338180.1| - 0.00021 20.8 0.5 0.0011 18.6 0.4 2.1 2 0 0 2 2 2 1 KOW motif Ribosomal_L3 PF00297.17 gi|327311283|ref|YP_004338180.1| - 0.035 13.5 0.1 0.038 13.3 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L3 EFP PF01132.15 gi|327311283|ref|YP_004338180.1| - 0.079 12.6 0.1 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain FluMu_gp41 PF10109.4 gi|327311283|ref|YP_004338180.1| - 0.085 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Mu-like prophage FluMu protein gp41 GTP_EFTU_D2 PF03144.20 gi|327311283|ref|YP_004338180.1| - 0.16 12.1 1.0 2.5 8.2 0.1 2.4 2 1 0 2 2 2 0 Elongation factor Tu domain 2 HTH_36 PF13730.1 gi|327311284|ref|YP_004338181.1| - 5.6e-05 23.1 0.0 0.00015 21.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|327311284|ref|YP_004338181.1| - 0.00075 19.7 0.1 0.047 14.0 0.0 2.9 3 1 1 4 4 4 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|327311284|ref|YP_004338181.1| - 0.0011 18.5 0.1 0.0027 17.3 0.0 1.7 1 0 0 1 1 1 1 MarR family TP_methylase PF00590.15 gi|327311284|ref|YP_004338181.1| - 0.0052 16.5 0.0 0.0094 15.6 0.0 1.4 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HTH_11 PF08279.7 gi|327311284|ref|YP_004338181.1| - 0.026 14.1 0.0 0.057 13.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_Mga PF08280.6 gi|327311284|ref|YP_004338181.1| - 0.038 13.7 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_24 PF13412.1 gi|327311284|ref|YP_004338181.1| - 0.058 12.7 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Put_DNA-bind_N PF06971.8 gi|327311284|ref|YP_004338181.1| - 0.094 12.4 0.3 0.69 9.7 0.1 2.3 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus ThiF PF00899.16 gi|327311285|ref|YP_004338182.1| - 8.8e-43 145.3 0.0 1.2e-42 145.0 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|327311285|ref|YP_004338182.1| - 7.5e-19 67.1 0.1 1.3e-18 66.3 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain 2-Hacid_dh_C PF02826.14 gi|327311285|ref|YP_004338182.1| - 0.0099 15.0 0.1 0.15 11.2 0.0 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|327311285|ref|YP_004338182.1| - 0.028 14.0 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.20 gi|327311285|ref|YP_004338182.1| - 0.051 13.5 1.3 0.26 11.2 0.9 1.9 1 1 0 1 1 1 0 short chain dehydrogenase Nramp PF01566.13 gi|327311286|ref|YP_004338183.1| - 3.9e-45 154.2 17.1 4.6e-45 153.9 11.9 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Avian_gp85 PF03708.9 gi|327311286|ref|YP_004338183.1| - 0.061 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Avian retrovirus envelope protein, gp85 ABC_tran PF00005.22 gi|327311287|ref|YP_004338184.1| - 2.1e-30 105.8 0.0 2.6e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327311287|ref|YP_004338184.1| - 1.9e-12 47.7 0.0 1.7e-06 28.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|327311287|ref|YP_004338184.1| - 0.00015 21.0 0.0 0.39 9.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|327311287|ref|YP_004338184.1| - 0.00022 21.3 1.0 0.23 11.6 0.1 2.7 2 1 1 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|327311287|ref|YP_004338184.1| - 0.0011 18.4 0.0 0.062 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|327311287|ref|YP_004338184.1| - 0.0051 16.8 0.5 0.0065 16.4 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|327311287|ref|YP_004338184.1| - 0.0056 16.1 1.0 0.33 10.3 0.2 2.5 2 1 0 3 3 3 1 AAA-like domain SbcCD_C PF13558.1 gi|327311287|ref|YP_004338184.1| - 0.0057 16.5 0.1 0.067 13.1 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|327311287|ref|YP_004338184.1| - 0.012 15.0 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|327311287|ref|YP_004338184.1| - 0.016 13.8 0.3 1.1 7.8 0.1 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|327311287|ref|YP_004338184.1| - 0.027 14.2 1.2 0.049 13.3 0.1 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|327311287|ref|YP_004338184.1| - 0.033 14.9 1.3 0.069 13.9 0.9 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|327311287|ref|YP_004338184.1| - 0.042 12.9 0.0 3.9 6.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|327311287|ref|YP_004338184.1| - 0.049 13.2 0.2 0.088 12.4 0.1 1.4 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|327311287|ref|YP_004338184.1| - 0.05 13.3 0.2 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|327311287|ref|YP_004338184.1| - 0.05 13.4 0.0 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|327311287|ref|YP_004338184.1| - 0.058 13.7 0.1 0.09 13.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|327311287|ref|YP_004338184.1| - 0.072 12.6 0.1 0.15 11.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|327311287|ref|YP_004338184.1| - 0.072 13.3 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|327311287|ref|YP_004338184.1| - 0.13 11.3 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NPCBM_assoc PF10633.4 gi|327311288|ref|YP_004338185.1| - 0.0004 20.3 9.9 0.0016 18.4 0.1 5.4 5 0 0 5 5 5 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|327311288|ref|YP_004338185.1| - 0.0056 16.7 0.3 0.0056 16.7 0.2 4.5 4 1 1 5 5 5 1 CARDB Transglut_C PF00927.17 gi|327311288|ref|YP_004338185.1| - 0.079 13.0 0.7 11 6.0 0.1 2.7 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain DUF11 PF01345.13 gi|327311288|ref|YP_004338185.1| - 0.095 12.7 13.4 0.03 14.3 1.2 3.7 3 0 0 3 3 3 0 Domain of unknown function DUF11 DUF3244 PF11589.3 gi|327311288|ref|YP_004338185.1| - 0.23 11.1 0.9 1 9.1 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3244) MacB_PCD PF12704.2 gi|327311289|ref|YP_004338186.1| - 2.1e-19 70.0 6.6 2.1e-19 70.0 4.6 2.3 2 1 0 2 2 2 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|327311289|ref|YP_004338186.1| - 6e-18 64.7 7.6 6e-18 64.7 5.3 2.5 2 0 0 2 2 2 2 FtsX-like permease family DUF650 PF04894.7 gi|327311290|ref|YP_004338187.1| - 2e-83 280.0 0.0 2.6e-83 279.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|327311290|ref|YP_004338187.1| - 3.9e-19 68.2 0.3 6.8e-19 67.5 0.2 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Radical_SAM PF04055.16 gi|327311291|ref|YP_004338188.1| - 5.9e-18 65.5 0.0 1.9e-17 63.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily OCD_Mu_crystall PF02423.10 gi|327311292|ref|YP_004338189.1| - 6.9e-39 133.4 0.9 9.7e-39 132.9 0.6 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|327311292|ref|YP_004338189.1| - 2.8e-07 30.6 0.3 4.3e-07 30.1 0.2 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|327311292|ref|YP_004338189.1| - 0.012 16.0 0.5 0.023 15.1 0.3 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|327311292|ref|YP_004338189.1| - 0.11 12.9 0.6 0.3 11.6 0.1 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold FG-GAP PF01839.18 gi|327311293|ref|YP_004338190.1| - 0.98 9.1 3.3 10 5.9 0.1 3.3 3 0 0 3 3 3 0 FG-GAP repeat HTH_24 PF13412.1 gi|327311294|ref|YP_004338191.1| - 6.5e-05 22.2 0.0 0.0001 21.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|327311294|ref|YP_004338191.1| - 0.00011 21.9 0.0 0.00021 21.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|327311294|ref|YP_004338191.1| - 0.004 16.6 1.0 0.0084 15.6 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain DUF977 PF06163.6 gi|327311294|ref|YP_004338191.1| - 0.0045 16.7 0.0 0.007 16.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_42 PF06224.7 gi|327311294|ref|YP_004338191.1| - 0.0085 15.4 0.8 0.012 14.9 0.5 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|327311294|ref|YP_004338191.1| - 0.028 14.0 0.0 0.072 12.8 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.1 gi|327311294|ref|YP_004338191.1| - 0.029 13.5 0.0 0.067 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF3846 PF12957.2 gi|327311294|ref|YP_004338191.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3846) Mito_fiss_reg PF05308.6 gi|327311294|ref|YP_004338191.1| - 0.19 11.0 3.7 0.29 10.4 2.5 1.3 1 0 0 1 1 1 0 Mitochondrial fission regulator TetR_N PF00440.18 gi|327311294|ref|YP_004338191.1| - 0.28 10.8 1.4 1.8 8.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF3529 PF12046.3 gi|327311295|ref|YP_004338192.1| - 0.93 8.4 4.9 1.4 7.8 3.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) NADH_dehy_S2_C PF06444.6 gi|327311295|ref|YP_004338192.1| - 6.6 7.1 6.9 2.7 8.3 0.4 2.3 2 0 0 2 2 2 0 NADH dehydrogenase subunit 2 C-terminus Hira PF07569.6 gi|327311297|ref|YP_004338194.1| - 0.082 12.1 0.6 1.8 7.7 0.0 2.1 2 0 0 2 2 2 0 TUP1-like enhancer of split Kelch_6 PF13964.1 gi|327311298|ref|YP_004338195.1| - 7.6 6.8 7.1 2.3 8.5 0.7 2.7 2 1 0 2 2 2 0 Kelch motif DUF3721 PF12518.3 gi|327311299|ref|YP_004338196.1| - 2.3 7.9 4.9 1.6 8.4 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function ERAP1_C PF11838.3 gi|327311300|ref|YP_004338197.1| - 0.095 11.9 0.1 0.23 10.6 0.0 1.6 2 0 0 2 2 2 0 ERAP1-like C-terminal domain FCD PF07729.7 gi|327311300|ref|YP_004338197.1| - 8.2 6.7 9.6 0.51 10.6 2.1 2.2 2 1 0 2 2 2 0 FCD domain HD PF01966.17 gi|327311302|ref|YP_004338199.1| - 8.1e-05 22.6 0.2 0.00014 21.8 0.1 1.4 1 0 0 1 1 1 1 HD domain TauE PF01925.14 gi|327311303|ref|YP_004338200.1| - 1.2e-38 132.9 27.0 1.6e-38 132.5 18.7 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1634 PF07843.6 gi|327311304|ref|YP_004338201.1| - 2.5e-30 104.2 9.9 2.9e-30 103.9 6.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) TctB PF07331.6 gi|327311304|ref|YP_004338201.1| - 0.0079 15.8 8.3 0.01 15.4 5.8 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family Tetraspannin PF00335.15 gi|327311304|ref|YP_004338201.1| - 8.6 5.5 7.4 12 5.0 5.2 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF2250 PF10007.4 gi|327311305|ref|YP_004338202.1| - 1.2e-26 92.3 0.1 1.6e-26 92.0 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.2 gi|327311305|ref|YP_004338202.1| - 0.00022 20.9 1.6 0.0077 16.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|327311305|ref|YP_004338202.1| - 0.0017 18.0 1.2 0.078 12.6 0.1 2.5 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|327311305|ref|YP_004338202.1| - 0.012 15.2 0.1 0.049 13.3 0.0 2.0 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|327311305|ref|YP_004338202.1| - 0.022 14.1 0.2 0.065 12.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|327311305|ref|YP_004338202.1| - 0.029 13.9 1.4 0.4 10.3 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|327311305|ref|YP_004338202.1| - 0.043 13.3 0.0 0.062 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|327311305|ref|YP_004338202.1| - 0.057 13.7 0.1 0.16 12.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain CutA1 PF03091.10 gi|327311306|ref|YP_004338203.1| - 5.8e-39 131.8 0.0 6.4e-39 131.7 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein PhosphMutase PF10143.4 gi|327311307|ref|YP_004338204.1| - 1.2e-55 187.8 0.0 2e-55 187.1 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|327311307|ref|YP_004338204.1| - 4.2e-46 157.3 0.0 5.1e-46 157.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.15 gi|327311307|ref|YP_004338204.1| - 5.4e-05 22.0 0.2 0.00061 18.5 0.4 1.9 1 1 1 2 2 2 2 Alkaline phosphatase Phosphodiest PF01663.17 gi|327311307|ref|YP_004338204.1| - 0.0042 16.4 0.1 0.011 15.1 0.0 1.6 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase AP2 PF00847.15 gi|327311307|ref|YP_004338204.1| - 0.21 11.7 0.9 4.9 7.3 0.1 2.6 2 0 0 2 2 2 0 AP2 domain Acetyltransf_1 PF00583.19 gi|327311308|ref|YP_004338205.1| - 2.3e-14 53.1 0.2 3.2e-14 52.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|327311308|ref|YP_004338205.1| - 1.4e-07 31.5 0.0 2.2e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|327311308|ref|YP_004338205.1| - 2.1e-07 30.8 0.3 3.8e-07 30.0 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|327311308|ref|YP_004338205.1| - 2.2e-07 30.5 0.0 3.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|327311308|ref|YP_004338205.1| - 3e-07 30.5 0.0 4e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|327311308|ref|YP_004338205.1| - 6.8e-07 29.2 0.1 9.3e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|327311308|ref|YP_004338205.1| - 2e-06 27.8 0.1 2.7e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|327311308|ref|YP_004338205.1| - 8.6e-05 22.7 0.1 0.00022 21.3 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF763 PF05559.6 gi|327311309|ref|YP_004338206.1| - 6e-122 406.5 0.0 6.9e-122 406.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) PGM_PMM_I PF02878.11 gi|327311310|ref|YP_004338207.1| - 1.5e-28 99.0 0.0 3.4e-28 97.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|327311310|ref|YP_004338207.1| - 2.2e-20 72.8 0.0 4.5e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|327311310|ref|YP_004338207.1| - 7.6e-18 64.5 0.0 1.2e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|327311310|ref|YP_004338207.1| - 2.6e-10 40.1 0.1 9.6e-10 38.3 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Glyco_tranf_2_3 PF13641.1 gi|327311311|ref|YP_004338208.1| - 2.4e-23 83.1 0.1 5.5e-23 81.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|327311311|ref|YP_004338208.1| - 1.7e-13 50.7 20.5 2.3e-11 43.7 14.2 2.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|327311311|ref|YP_004338208.1| - 1.6e-10 40.9 0.0 2.5e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|327311311|ref|YP_004338208.1| - 4.1e-08 32.6 0.0 9.3e-08 31.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|327311311|ref|YP_004338208.1| - 0.0014 17.7 0.0 0.0034 16.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 tRNA-synt_2 PF00152.15 gi|327311312|ref|YP_004338209.1| - 9.9e-89 297.4 0.0 2e-88 296.3 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|327311312|ref|YP_004338209.1| - 1.1e-08 34.8 0.0 1.9e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|327311312|ref|YP_004338209.1| - 1.5e-06 27.5 0.0 0.013 14.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) RPA_interact_M PF14767.1 gi|327311312|ref|YP_004338209.1| - 0.0082 16.8 0.3 0.28 11.9 0.1 2.9 3 0 0 3 3 3 1 Replication protein A interacting middle tRNA-synt_2b PF00587.20 gi|327311312|ref|YP_004338209.1| - 0.11 12.1 0.0 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) PAGK PF15284.1 gi|327311313|ref|YP_004338210.1| - 0.078 12.7 1.0 0.19 11.5 0.7 1.7 1 0 0 1 1 1 0 Phage-encoded virulence factor DUF463 PF04317.7 gi|327311313|ref|YP_004338210.1| - 0.11 11.1 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 YcjX-like family, DUF463 Metallophos_2 PF12850.2 gi|327311314|ref|YP_004338211.1| - 1.5e-26 93.0 0.1 1.9e-26 92.7 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|327311314|ref|YP_004338211.1| - 1.3e-05 24.4 0.1 0.0051 16.0 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|327311314|ref|YP_004338211.1| - 0.0021 17.5 1.5 0.14 11.5 1.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3663 PF12404.3 gi|327311314|ref|YP_004338211.1| - 0.11 12.2 0.0 0.3 10.9 0.0 1.7 2 0 0 2 2 2 0 Peptidase DUF2188 PF09954.4 gi|327311314|ref|YP_004338211.1| - 0.13 12.1 0.1 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) LysE PF01810.13 gi|327311315|ref|YP_004338212.1| - 1.2e-22 80.1 16.7 1.4e-22 79.9 11.6 1.0 1 0 0 1 1 1 1 LysE type translocator DAO PF01266.19 gi|327311316|ref|YP_004338213.1| - 1e-09 37.7 9.6 1.6e-08 33.8 6.3 2.5 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|327311316|ref|YP_004338213.1| - 7e-08 32.3 1.5 1.7e-07 31.1 1.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|327311316|ref|YP_004338213.1| - 1.7e-06 27.1 2.0 0.00041 19.3 0.9 2.4 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|327311316|ref|YP_004338213.1| - 7.4e-06 25.2 2.1 7.4e-06 25.2 1.4 2.0 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.14 gi|327311316|ref|YP_004338213.1| - 1.6e-05 24.1 0.5 3.5e-05 23.0 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|327311316|ref|YP_004338213.1| - 1.7e-05 24.1 0.7 1.7e-05 24.1 0.5 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|327311316|ref|YP_004338213.1| - 4.6e-05 23.3 0.1 8.4e-05 22.5 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|327311316|ref|YP_004338213.1| - 5.3e-05 22.4 0.1 0.00011 21.4 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|327311316|ref|YP_004338213.1| - 0.001 17.6 0.3 0.003 16.0 0.1 1.8 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.17 gi|327311316|ref|YP_004338213.1| - 0.0015 17.4 6.7 0.0016 17.3 1.3 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.9 gi|327311316|ref|YP_004338213.1| - 0.0022 17.4 0.3 0.0038 16.6 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|327311316|ref|YP_004338213.1| - 0.016 13.8 2.8 1.2 7.7 0.3 2.5 2 1 0 2 2 2 0 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|327311316|ref|YP_004338213.1| - 0.063 13.3 0.9 0.12 12.4 0.7 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|327311316|ref|YP_004338213.1| - 0.096 12.3 0.2 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|327311316|ref|YP_004338213.1| - 0.12 11.8 0.2 0.29 10.6 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|327311316|ref|YP_004338213.1| - 0.14 12.5 3.4 0.34 11.3 0.1 2.7 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|327311316|ref|YP_004338213.1| - 0.16 10.2 0.1 0.29 9.4 0.1 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor Lycopene_cycl PF05834.7 gi|327311316|ref|YP_004338213.1| - 0.51 9.1 1.7 1.8 7.4 0.2 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein NTP_transf_3 PF12804.2 gi|327311317|ref|YP_004338214.1| - 9.4e-16 58.2 0.1 2.1e-15 57.1 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain MttA_Hcf106 PF02416.11 gi|327311318|ref|YP_004338215.1| - 1.3e-17 62.5 1.1 7.8e-16 56.9 0.1 2.3 1 1 1 2 2 2 2 mttA/Hcf106 family Hom_end PF05204.9 gi|327311318|ref|YP_004338215.1| - 0.0045 16.9 0.0 0.0047 16.8 0.0 1.2 1 0 0 1 1 1 1 Homing endonuclease OapA_N PF08525.6 gi|327311318|ref|YP_004338215.1| - 0.023 14.4 0.6 0.037 13.7 0.4 1.4 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif Glyco_hydro_12 PF01670.11 gi|327311319|ref|YP_004338216.1| - 7e-09 35.6 0.0 1.5e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 RskA PF10099.4 gi|327311319|ref|YP_004338216.1| - 0.17 11.6 2.1 0.25 11.0 1.4 1.2 1 0 0 1 1 1 0 Anti-sigma-K factor rskA Gelsolin PF00626.17 gi|327311320|ref|YP_004338217.1| - 0.026 14.2 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Gelsolin repeat Asparaginase PF00710.15 gi|327311321|ref|YP_004338218.1| - 2.3e-87 292.7 0.0 2.9e-87 292.4 0.0 1.1 1 0 0 1 1 1 1 Asparaginase HD_3 PF13023.1 gi|327311322|ref|YP_004338219.1| - 3e-09 36.8 0.0 4.6e-09 36.2 0.0 1.5 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|327311322|ref|YP_004338219.1| - 0.0063 16.5 1.5 0.012 15.6 1.0 1.4 1 1 0 1 1 1 1 HD domain zf-ZPR1 PF03367.8 gi|327311323|ref|YP_004338220.1| - 1.5e-29 102.2 0.0 1.7e-29 102.0 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Prim_Zn_Ribbon PF08273.7 gi|327311323|ref|YP_004338220.1| - 0.0081 16.2 2.3 0.016 15.2 1.6 1.4 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase UPF0547 PF10571.4 gi|327311323|ref|YP_004338220.1| - 0.048 13.3 2.3 1.2 8.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|327311323|ref|YP_004338220.1| - 0.063 12.5 2.1 3 7.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF3107 PF11305.3 gi|327311323|ref|YP_004338220.1| - 0.12 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3107) GFA PF04828.9 gi|327311323|ref|YP_004338220.1| - 0.13 12.2 1.6 2.6 8.0 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Lar_restr_allev PF14354.1 gi|327311323|ref|YP_004338220.1| - 0.14 12.4 0.3 0.27 11.5 0.2 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|327311323|ref|YP_004338220.1| - 0.18 11.6 0.7 0.86 9.4 0.5 1.9 1 1 0 1 1 1 0 Double zinc ribbon RecR PF02132.10 gi|327311323|ref|YP_004338220.1| - 0.21 11.0 1.1 3 7.3 0.0 2.3 2 0 0 2 2 2 0 RecR protein DNA_RNApol_7kD PF03604.8 gi|327311323|ref|YP_004338220.1| - 0.74 9.3 3.0 13 5.3 0.6 2.6 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF2422 PF10337.4 gi|327311324|ref|YP_004338221.1| - 0.45 9.2 2.4 0.52 9.0 1.4 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2422) DUF1212 PF06738.7 gi|327311324|ref|YP_004338221.1| - 1.1 8.6 7.6 1.3 8.4 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) DUF3087 PF11286.3 gi|327311324|ref|YP_004338221.1| - 1.4 8.1 6.1 0.33 10.1 2.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3087) DUF3753 PF12575.3 gi|327311324|ref|YP_004338221.1| - 6.3 6.6 6.6 7.5 6.4 0.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3753) VKOR PF07884.9 gi|327311324|ref|YP_004338221.1| - 6.8 6.5 13.2 1.1 9.0 5.6 1.7 1 1 1 2 2 2 0 Vitamin K epoxide reductase family AA_kinase PF00696.23 gi|327311325|ref|YP_004338222.1| - 4e-33 114.9 0.2 4.5e-33 114.7 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family polyprenyl_synt PF00348.12 gi|327311326|ref|YP_004338223.1| - 4.9e-48 163.2 0.0 6.2e-48 162.9 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase HEAT_2 PF13646.1 gi|327311326|ref|YP_004338223.1| - 0.31 11.3 2.5 3.8 7.8 0.1 3.3 2 2 1 3 3 3 0 HEAT repeats DUF92 PF01940.11 gi|327311327|ref|YP_004338224.1| - 2.5e-49 167.4 13.2 3.1e-49 167.1 9.2 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 CTP_transf_1 PF01148.15 gi|327311327|ref|YP_004338224.1| - 0.17 11.5 9.5 0.39 10.3 6.7 1.5 1 1 0 1 1 1 0 Cytidylyltransferase family T2SM PF04612.7 gi|327311327|ref|YP_004338224.1| - 3.4 7.4 4.8 21 4.8 0.3 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M AIRS PF00586.19 gi|327311329|ref|YP_004338226.1| - 1.8e-10 40.9 0.2 9.4e-10 38.6 0.0 2.2 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain Arabinose_bd PF12625.2 gi|327311330|ref|YP_004338227.1| - 0.074 12.8 0.1 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Arabinose-binding domain of AraC transcription regulator, N-term Radical_SAM PF04055.16 gi|327311331|ref|YP_004338228.1| - 1e-15 58.2 0.0 1.5e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Rib_5-P_isom_A PF06026.9 gi|327311332|ref|YP_004338229.1| - 6.1e-48 162.3 0.0 7.9e-48 162.0 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|327311332|ref|YP_004338229.1| - 7.7e-06 25.6 0.1 1.5e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 DeoR C terminal sensor domain CoA_trans PF01144.18 gi|327311332|ref|YP_004338229.1| - 0.042 13.0 0.0 0.069 12.3 0.0 1.3 1 0 0 1 1 1 0 Coenzyme A transferase Sugar-bind PF04198.8 gi|327311332|ref|YP_004338229.1| - 0.066 12.0 0.0 0.096 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain CBS PF00571.23 gi|327311333|ref|YP_004338230.1| - 4.8e-29 99.8 1.8 9.4e-14 50.9 0.0 2.1 2 0 0 2 2 2 2 CBS domain AFOR_N PF02730.10 gi|327311334|ref|YP_004338231.1| - 6.6e-28 97.4 0.2 9.2e-28 96.9 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|327311334|ref|YP_004338231.1| - 1.1e-13 50.7 0.4 4.6e-13 48.6 0.0 2.1 2 1 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 DUF608 PF04685.8 gi|327311335|ref|YP_004338232.1| - 1.5e-76 257.5 0.0 2.3e-76 256.8 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function, DUF608 GBA2_N PF12215.3 gi|327311335|ref|YP_004338232.1| - 2.9e-47 161.2 0.0 5.1e-47 160.4 0.0 1.4 1 0 0 1 1 1 1 beta-Glucocerebrosidase 2 N terminal Glyco_hydro_52 PF03512.8 gi|327311335|ref|YP_004338232.1| - 0.068 11.7 0.0 0.12 10.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 52 POR PF01558.13 gi|327311336|ref|YP_004338233.1| - 1.1e-37 129.6 0.6 1.6e-37 129.0 0.4 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|327311337|ref|YP_004338234.1| - 5.4e-14 51.1 14.9 6.7e-08 31.8 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|327311337|ref|YP_004338234.1| - 6.7e-11 41.8 6.7 8.7e-11 41.5 4.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327311337|ref|YP_004338234.1| - 2.4e-10 39.8 13.8 4.1e-06 26.4 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|327311337|ref|YP_004338234.1| - 2.1e-09 37.0 10.0 0.00013 21.7 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327311337|ref|YP_004338234.1| - 2.3e-09 36.6 12.1 0.00019 21.1 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|327311337|ref|YP_004338234.1| - 2.7e-09 37.2 9.7 4.8e-09 36.4 6.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|327311337|ref|YP_004338234.1| - 5.1e-09 36.2 11.5 6.5e-09 35.9 8.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327311337|ref|YP_004338234.1| - 1.5e-08 35.2 10.1 0.00037 21.1 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|327311337|ref|YP_004338234.1| - 3.2e-06 27.0 7.7 5e-06 26.4 5.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|327311337|ref|YP_004338234.1| - 2.2e-05 24.9 6.6 0.014 15.9 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|327311337|ref|YP_004338234.1| - 0.00011 22.1 11.8 0.008 16.4 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|327311337|ref|YP_004338234.1| - 0.0006 20.1 9.7 0.012 16.0 0.3 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|327311337|ref|YP_004338234.1| - 0.0012 19.1 11.9 0.0082 16.4 8.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327311337|ref|YP_004338234.1| - 0.013 15.9 13.8 0.12 12.8 2.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327311337|ref|YP_004338234.1| - 0.11 13.0 6.2 0.11 13.0 4.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|327311338|ref|YP_004338235.1| - 3.2e-74 249.3 3.2 5.4e-74 248.5 2.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|327311338|ref|YP_004338235.1| - 1.1e-05 25.3 0.0 3e-05 23.9 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|327311339|ref|YP_004338236.1| - 9.1e-26 90.2 1.5 1.4e-25 89.6 1.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PK_C PF02887.11 gi|327311339|ref|YP_004338236.1| - 0.026 14.0 0.0 0.79 9.2 0.0 2.2 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain Cupin_2 PF07883.6 gi|327311340|ref|YP_004338237.1| - 5e-14 51.5 0.6 6.3e-14 51.2 0.4 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|327311340|ref|YP_004338237.1| - 6.2e-08 32.4 0.0 7.2e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|327311340|ref|YP_004338237.1| - 3.3e-05 23.3 0.1 4.3e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 Cupin ARD PF03079.9 gi|327311340|ref|YP_004338237.1| - 6.7e-05 22.8 0.0 7.8e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_3 PF05899.7 gi|327311340|ref|YP_004338237.1| - 0.00048 19.4 0.1 0.00064 19.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_8 PF13621.1 gi|327311340|ref|YP_004338237.1| - 0.0093 15.4 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 Cupin-like domain Cupin_6 PF12852.2 gi|327311340|ref|YP_004338237.1| - 0.015 14.9 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Cupin DUF1637 PF07847.7 gi|327311340|ref|YP_004338237.1| - 0.035 13.4 0.0 0.81 9.0 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1637) DUF1498 PF07385.7 gi|327311340|ref|YP_004338237.1| - 0.096 11.8 0.0 0.096 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) DUF4480 PF13715.1 gi|327311341|ref|YP_004338238.1| - 1.8e-06 27.8 2.3 0.00064 19.7 0.3 4.0 3 0 0 3 3 3 1 Domain of unknown function (DUF4480) CarboxypepD_reg PF13620.1 gi|327311341|ref|YP_004338238.1| - 2.6e-05 24.1 4.9 2.6e-05 24.1 3.4 5.7 5 2 1 6 6 6 2 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|327311341|ref|YP_004338238.1| - 0.03 14.1 0.1 0.25 11.1 0.0 2.5 2 0 0 2 2 2 0 Cna protein B-type domain Glyco_hydro_31 PF01055.21 gi|327311342|ref|YP_004338239.1| - 2e-134 448.7 0.1 2.5e-134 448.4 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|327311342|ref|YP_004338239.1| - 9e-15 54.2 0.0 1.8e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 Galactose mutarotase-like Raffinose_syn PF05691.7 gi|327311343|ref|YP_004338240.1| - 3.9e-43 147.0 0.3 8.9e-26 89.6 0.0 2.7 3 0 0 3 3 3 2 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.13 gi|327311343|ref|YP_004338240.1| - 1.7e-05 23.7 0.0 2.5e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Melibiase Succ_CoA_lig PF13607.1 gi|327311345|ref|YP_004338242.1| - 6e-52 174.9 0.6 1.3e-50 170.5 0.2 2.9 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|327311345|ref|YP_004338242.1| - 7e-23 81.0 0.3 7e-22 77.7 0.1 2.6 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|327311345|ref|YP_004338242.1| - 7.9e-13 48.7 0.5 2.2e-12 47.3 0.3 1.8 1 0 0 1 1 1 1 CoA binding domain NAD_Gly3P_dh_N PF01210.18 gi|327311345|ref|YP_004338242.1| - 2.1e-05 24.3 0.0 0.00031 20.4 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Peripla_BP_3 PF13377.1 gi|327311345|ref|YP_004338242.1| - 0.00027 20.9 0.4 0.44 10.5 0.0 3.1 3 2 0 3 3 3 2 Periplasmic binding protein-like domain F420_oxidored PF03807.12 gi|327311345|ref|YP_004338242.1| - 0.0029 18.0 0.8 0.011 16.0 0.0 2.4 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.12 gi|327311345|ref|YP_004338242.1| - 0.018 13.9 0.0 0.032 13.1 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase Semialdhyde_dh PF01118.19 gi|327311345|ref|YP_004338242.1| - 0.071 13.4 0.0 0.24 11.6 0.0 2.0 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.1 gi|327311346|ref|YP_004338243.1| - 5e-77 258.0 0.0 5.6e-77 257.9 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|327311346|ref|YP_004338243.1| - 4.8e-06 26.0 0.0 9.2e-06 25.1 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|327311346|ref|YP_004338243.1| - 9.2e-06 25.5 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|327311346|ref|YP_004338243.1| - 0.00021 20.8 0.0 0.00028 20.3 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.12 gi|327311346|ref|YP_004338243.1| - 0.0024 17.1 0.0 0.0035 16.6 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|327311346|ref|YP_004338243.1| - 0.055 12.8 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain ANTAR PF03861.9 gi|327311346|ref|YP_004338243.1| - 0.14 11.7 0.2 2.5 7.7 0.0 2.5 2 0 0 2 2 2 0 ANTAR domain MFS_1 PF07690.11 gi|327311347|ref|YP_004338244.1| - 1.2e-43 149.1 44.2 1.2e-43 149.1 30.6 2.4 2 1 0 2 2 2 2 Major Facilitator Superfamily Acetyltransf_1 PF00583.19 gi|327311348|ref|YP_004338245.1| - 3.5e-11 42.9 1.8 2.6e-10 40.1 0.2 2.4 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|327311348|ref|YP_004338245.1| - 2.6e-09 37.2 0.4 3.7e-09 36.7 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|327311348|ref|YP_004338245.1| - 0.00054 19.6 0.0 0.00093 18.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|327311348|ref|YP_004338245.1| - 0.0026 17.8 0.1 0.0062 16.6 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|327311348|ref|YP_004338245.1| - 0.0029 17.5 0.7 0.0048 16.8 0.5 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|327311348|ref|YP_004338245.1| - 0.016 15.0 0.1 0.035 13.9 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|327311348|ref|YP_004338245.1| - 0.063 12.8 0.0 0.082 12.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_S49 PF01343.13 gi|327311349|ref|YP_004338246.1| - 4.9e-19 68.6 2.6 2e-09 37.4 0.6 2.4 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.18 gi|327311349|ref|YP_004338246.1| - 7.2e-11 42.0 0.3 2.7e-07 30.4 0.0 2.7 2 1 1 3 3 3 2 Clp protease ABC_transp_aux PF09822.4 gi|327311349|ref|YP_004338246.1| - 6.4e-06 25.8 0.0 9.8e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system ECH PF00378.15 gi|327311349|ref|YP_004338246.1| - 0.0019 17.3 0.7 0.024 13.7 0.0 2.1 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase family DUF4350 PF14258.1 gi|327311349|ref|YP_004338246.1| - 0.0023 18.1 0.1 0.013 15.7 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) PALP PF00291.20 gi|327311350|ref|YP_004338247.1| - 1.8e-68 231.0 2.6 2.2e-68 230.7 1.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.14 gi|327311350|ref|YP_004338247.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|327311350|ref|YP_004338247.1| - 0.21 11.1 1.6 0.53 9.8 1.1 1.7 1 0 0 1 1 1 0 zinc-ribbon domain AA_kinase PF00696.23 gi|327311351|ref|YP_004338248.1| - 3e-44 151.3 0.0 4.7e-44 150.7 0.0 1.3 2 0 0 2 2 2 1 Amino acid kinase family Semialdhyde_dh PF01118.19 gi|327311352|ref|YP_004338249.1| - 3.2e-34 117.8 0.0 1.3e-33 115.9 0.0 2.0 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|327311352|ref|YP_004338249.1| - 7.1e-33 113.9 0.0 1.1e-32 113.3 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|327311352|ref|YP_004338249.1| - 0.0029 18.1 0.0 0.011 16.2 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|327311352|ref|YP_004338249.1| - 0.0061 16.4 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus RhodobacterPufX PF11511.3 gi|327311352|ref|YP_004338249.1| - 0.068 12.5 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 Intrinsic membrane protein PufX Gp_dh_C PF02800.15 gi|327311352|ref|YP_004338249.1| - 0.069 12.6 0.5 0.21 11.0 0.4 1.7 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Na_H_Exchanger PF00999.16 gi|327311353|ref|YP_004338250.1| - 2e-48 164.8 52.9 2.6e-48 164.4 36.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Homoserine_dh PF00742.14 gi|327311354|ref|YP_004338251.1| - 9.6e-41 139.4 0.0 3.7e-40 137.5 0.0 1.8 1 1 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|327311354|ref|YP_004338251.1| - 0.00017 21.9 0.0 0.00056 20.2 0.0 1.8 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DUF86 PF01934.12 gi|327311357|ref|YP_004338254.1| - 3.7e-14 52.3 0.0 6.2e-14 51.6 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF86 Peptidase_M48 PF01435.13 gi|327311359|ref|YP_004338256.1| - 5.6e-34 117.6 0.0 8.6e-34 117.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 NUDIX PF00293.23 gi|327311360|ref|YP_004338257.1| - 2e-21 76.0 0.0 2.4e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain HypA PF01155.14 gi|327311362|ref|YP_004338259.1| - 0.00028 20.5 0.2 0.00035 20.2 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|327311362|ref|YP_004338259.1| - 0.00034 20.5 3.2 0.00057 19.7 2.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain UPF0547 PF10571.4 gi|327311362|ref|YP_004338259.1| - 0.016 14.9 3.7 0.095 12.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|327311362|ref|YP_004338259.1| - 0.026 14.0 2.2 0.057 12.9 1.5 1.6 1 1 0 1 1 1 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|327311362|ref|YP_004338259.1| - 0.063 13.0 1.0 1.4 8.7 0.3 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|327311362|ref|YP_004338259.1| - 0.086 12.5 2.0 3 7.6 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327311362|ref|YP_004338259.1| - 0.096 11.9 1.8 5.1 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|327311362|ref|YP_004338259.1| - 0.11 12.1 2.0 3.4 7.3 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|327311362|ref|YP_004338259.1| - 0.11 12.1 3.9 5 6.8 0.1 2.5 3 0 0 3 3 2 0 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|327311362|ref|YP_004338259.1| - 0.12 12.2 2.5 0.31 10.8 1.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|327311362|ref|YP_004338259.1| - 0.12 11.7 1.8 2.9 7.2 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|327311362|ref|YP_004338259.1| - 0.14 11.8 1.0 0.2 11.3 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|327311362|ref|YP_004338259.1| - 0.23 11.1 0.5 0.23 11.1 0.3 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF4379 PF14311.1 gi|327311362|ref|YP_004338259.1| - 0.37 10.6 5.8 0.69 9.7 4.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) zf-C2H2 PF00096.21 gi|327311362|ref|YP_004338259.1| - 0.76 10.2 3.9 0.94 9.9 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|327311362|ref|YP_004338259.1| - 1.2 9.6 5.3 4.7 7.7 0.7 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Fer4_15 PF13459.1 gi|327311363|ref|YP_004338260.1| - 9.8e-12 45.2 0.0 1.2e-11 45.0 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|327311363|ref|YP_004338260.1| - 9.6e-11 41.9 0.0 1.4e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|327311363|ref|YP_004338260.1| - 0.0014 18.1 2.3 0.088 12.4 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|327311363|ref|YP_004338260.1| - 0.011 15.5 0.4 0.095 12.5 0.0 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|327311363|ref|YP_004338260.1| - 0.1 12.4 0.1 0.43 10.4 0.1 1.8 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_2 PF12797.2 gi|327311363|ref|YP_004338260.1| - 0.11 12.5 0.2 0.11 12.5 0.2 1.7 2 0 0 2 2 2 0 4Fe-4S binding domain Ribosomal_L40e PF01020.12 gi|327311364|ref|YP_004338261.1| - 1.3e-06 27.8 5.4 1.4e-06 27.7 3.7 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-ribbon_3 PF13248.1 gi|327311364|ref|YP_004338261.1| - 5.6e-06 25.3 4.9 7.1e-06 25.0 3.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327311364|ref|YP_004338261.1| - 5.8e-06 25.6 3.2 7.6e-06 25.2 2.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|327311364|ref|YP_004338261.1| - 0.00011 21.9 1.1 0.00012 21.7 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|327311364|ref|YP_004338261.1| - 0.00023 20.1 3.4 0.00029 19.8 2.4 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DUF35_N PF12172.3 gi|327311364|ref|YP_004338261.1| - 0.00075 19.3 1.6 0.00097 18.9 1.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|327311364|ref|YP_004338261.1| - 0.0085 15.7 0.3 0.0094 15.6 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family XPA_N PF01286.13 gi|327311364|ref|YP_004338261.1| - 0.016 14.8 0.6 0.91 9.2 0.1 2.1 2 0 0 2 2 2 0 XPA protein N-terminal DNA_RNApol_7kD PF03604.8 gi|327311364|ref|YP_004338261.1| - 0.017 14.6 7.1 0.083 12.3 4.9 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-IS66 PF13005.2 gi|327311364|ref|YP_004338261.1| - 0.078 12.9 2.9 0.45 10.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|327311364|ref|YP_004338261.1| - 0.11 11.8 2.8 5 6.5 0.1 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding zf-DHHC PF01529.15 gi|327311364|ref|YP_004338261.1| - 0.12 11.7 1.0 0.12 11.7 0.7 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase OrfB_Zn_ribbon PF07282.6 gi|327311364|ref|YP_004338261.1| - 0.14 11.8 3.2 0.19 11.4 2.2 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.9 gi|327311364|ref|YP_004338261.1| - 0.2 11.3 3.8 2.3 7.9 0.4 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|327311364|ref|YP_004338261.1| - 0.23 11.2 4.7 0.99 9.2 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|327311364|ref|YP_004338261.1| - 0.29 11.1 3.7 1.8 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.13 gi|327311364|ref|YP_004338261.1| - 0.32 10.6 2.5 4.6 6.9 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L37e PF01907.14 gi|327311364|ref|YP_004338261.1| - 0.41 10.4 7.1 1.1 9.1 3.1 2.0 1 1 1 2 2 2 0 Ribosomal protein L37e RNA_POL_M_15KD PF02150.11 gi|327311364|ref|YP_004338261.1| - 0.49 10.1 6.4 0.43 10.3 0.2 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Methyltransf_13 PF08421.6 gi|327311364|ref|YP_004338261.1| - 0.61 9.6 2.6 9.5 5.8 0.0 2.1 1 1 0 2 2 2 0 Putative zinc binding domain zf-HIT PF04438.11 gi|327311364|ref|YP_004338261.1| - 0.68 9.6 5.6 1.3 8.7 3.9 1.5 1 1 0 1 1 1 0 HIT zinc finger zf-MYND PF01753.13 gi|327311364|ref|YP_004338261.1| - 0.8 9.6 3.8 1.1 9.1 2.6 1.3 1 0 0 1 1 1 0 MYND finger zf-CCHC PF00098.18 gi|327311364|ref|YP_004338261.1| - 0.81 9.7 7.9 6 6.9 0.5 2.3 2 0 0 2 2 2 0 Zinc knuckle DUF2688 PF10892.3 gi|327311364|ref|YP_004338261.1| - 1.3 8.7 3.9 3.3 7.4 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) Zn-ribbon_8 PF09723.5 gi|327311364|ref|YP_004338261.1| - 1.8 8.5 4.7 49 3.9 3.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-CCHC_6 PF15288.1 gi|327311364|ref|YP_004338261.1| - 5.7 6.6 9.9 9.6 5.9 1.0 2.2 2 0 0 2 2 2 0 Zinc knuckle DUF3913 PF13052.1 gi|327311365|ref|YP_004338262.1| - 0.022 14.6 0.0 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3913) Zea_mays_MuDR PF05928.6 gi|327311365|ref|YP_004338262.1| - 0.15 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) Carb_kinase PF01256.12 gi|327311366|ref|YP_004338263.1| - 9.5e-54 182.2 1.7 1.4e-53 181.6 1.2 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|327311366|ref|YP_004338263.1| - 9e-46 155.5 1.2 1.9e-45 154.5 0.1 2.0 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|327311366|ref|YP_004338263.1| - 1.9e-07 30.5 2.9 5.5e-06 25.7 2.0 2.2 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Mannitol_dh_C PF08125.8 gi|327311366|ref|YP_004338263.1| - 0.063 12.4 0.0 0.095 11.8 0.0 1.2 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain Peptidase_M16 PF00675.15 gi|327311367|ref|YP_004338264.1| - 1.3e-18 67.2 0.0 2.2e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.16 gi|327311367|ref|YP_004338264.1| - 1.9e-14 53.7 0.0 5.5e-14 52.2 0.0 1.7 2 0 0 2 2 2 1 Peptidase M16 inactive domain MarR_2 PF12802.2 gi|327311368|ref|YP_004338265.1| - 1.7e-07 30.7 0.1 3.3e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|327311368|ref|YP_004338265.1| - 5e-07 29.3 0.0 8.2e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|327311368|ref|YP_004338265.1| - 1.9e-06 27.1 0.0 4.6e-06 25.9 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|327311368|ref|YP_004338265.1| - 1.2e-05 24.9 0.0 2.4e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|327311368|ref|YP_004338265.1| - 0.00015 21.2 0.1 0.00036 20.0 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|327311368|ref|YP_004338265.1| - 0.00026 20.4 0.0 0.00054 19.4 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_38 PF13936.1 gi|327311368|ref|YP_004338265.1| - 0.0004 19.8 0.0 0.00068 19.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|327311368|ref|YP_004338265.1| - 0.00063 19.5 0.0 0.0014 18.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|327311368|ref|YP_004338265.1| - 0.0022 17.8 0.0 0.0046 16.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|327311368|ref|YP_004338265.1| - 0.0027 17.2 0.0 0.0054 16.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.16 gi|327311368|ref|YP_004338265.1| - 0.0031 16.9 0.0 0.0062 15.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|327311368|ref|YP_004338265.1| - 0.0032 17.3 0.0 0.0054 16.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.1 gi|327311368|ref|YP_004338265.1| - 0.004 17.2 0.0 0.0079 16.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TspO_MBR PF03073.10 gi|327311368|ref|YP_004338265.1| - 0.0054 16.2 0.0 0.015 14.8 0.0 1.7 1 0 0 1 1 1 1 TspO/MBR family HTH_Crp_2 PF13545.1 gi|327311368|ref|YP_004338265.1| - 0.011 15.5 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|327311368|ref|YP_004338265.1| - 0.021 14.9 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_5 PF01022.15 gi|327311368|ref|YP_004338265.1| - 0.03 13.9 0.0 0.052 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|327311368|ref|YP_004338265.1| - 0.036 14.0 0.0 0.077 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|327311368|ref|YP_004338265.1| - 0.059 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.1 gi|327311368|ref|YP_004338265.1| - 0.075 13.3 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|327311368|ref|YP_004338265.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Mucin PF01456.12 gi|327311368|ref|YP_004338265.1| - 0.19 11.4 26.0 0.31 10.8 18.0 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein RPA_C PF08784.6 gi|327311368|ref|YP_004338265.1| - 0.6 10.5 6.5 39 4.7 4.5 2.6 1 1 0 1 1 1 0 Replication protein A C terminal TPPK_C PF12555.3 gi|327311368|ref|YP_004338265.1| - 0.78 9.5 7.1 0.094 12.4 1.5 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF1180 PF06679.7 gi|327311368|ref|YP_004338265.1| - 1.4 8.7 11.6 0.81 9.5 6.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1180) Radical_SAM PF04055.16 gi|327311369|ref|YP_004338266.1| - 4.5e-21 75.7 0.4 4.6e-20 72.4 0.0 2.4 2 1 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|327311369|ref|YP_004338266.1| - 2.7e-19 69.0 0.0 5.2e-19 68.1 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Fer4_14 PF13394.1 gi|327311369|ref|YP_004338266.1| - 0.0093 15.9 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|327311369|ref|YP_004338266.1| - 0.031 14.4 0.0 0.067 13.3 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Ribosomal_L34e PF01199.13 gi|327311373|ref|YP_004338270.1| - 4.1e-19 68.6 0.6 4.8e-19 68.3 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L34e Cytidylate_kin2 PF13189.1 gi|327311374|ref|YP_004338271.1| - 5.9e-21 75.1 0.6 2.5e-19 69.8 0.4 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|327311374|ref|YP_004338271.1| - 2.3e-16 60.2 0.1 3.1e-16 59.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|327311374|ref|YP_004338271.1| - 4.6e-12 46.8 3.8 4.3e-11 43.6 2.7 2.4 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|327311374|ref|YP_004338271.1| - 1.7e-08 34.0 0.4 2.3e-08 33.6 0.2 1.2 1 0 0 1 1 1 1 Cytidylate kinase SKI PF01202.17 gi|327311374|ref|YP_004338271.1| - 3.3e-06 27.0 0.4 1.6e-05 24.8 0.3 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.1 gi|327311374|ref|YP_004338271.1| - 1.2e-05 25.2 0.4 0.00023 21.0 0.2 2.4 2 1 0 2 2 1 1 AAA domain PRK PF00485.13 gi|327311374|ref|YP_004338271.1| - 0.00023 20.8 0.2 0.0071 15.9 0.0 2.2 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.10 gi|327311374|ref|YP_004338271.1| - 0.00026 20.7 0.0 0.00045 19.9 0.0 1.5 1 0 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|327311374|ref|YP_004338271.1| - 0.00052 19.7 0.0 0.00098 18.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|327311374|ref|YP_004338271.1| - 0.00059 18.9 0.1 0.0013 17.8 0.0 1.8 2 0 0 2 2 1 1 Zeta toxin ADK PF00406.17 gi|327311374|ref|YP_004338271.1| - 0.00065 19.6 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.1 gi|327311374|ref|YP_004338271.1| - 0.0007 19.6 1.2 0.0042 17.0 0.1 2.1 1 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|327311374|ref|YP_004338271.1| - 0.00072 19.7 0.0 0.0014 18.8 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|327311374|ref|YP_004338271.1| - 0.0011 19.0 0.5 0.0065 16.4 0.3 2.0 1 1 1 2 2 2 1 AAA ATPase domain KTI12 PF08433.5 gi|327311374|ref|YP_004338271.1| - 0.0011 18.2 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|327311374|ref|YP_004338271.1| - 0.0017 18.5 0.0 0.0036 17.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain Thymidylate_kin PF02223.12 gi|327311374|ref|YP_004338271.1| - 0.0023 17.3 0.1 1.3 8.3 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase NB-ARC PF00931.17 gi|327311374|ref|YP_004338271.1| - 0.0059 15.5 0.1 0.0087 14.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|327311374|ref|YP_004338271.1| - 0.0072 15.9 0.1 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_24 PF13479.1 gi|327311374|ref|YP_004338271.1| - 0.011 15.3 0.0 0.021 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|327311374|ref|YP_004338271.1| - 0.017 14.8 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|327311374|ref|YP_004338271.1| - 0.017 14.7 0.1 0.025 14.2 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_31 PF13614.1 gi|327311374|ref|YP_004338271.1| - 0.017 15.0 0.0 0.02 14.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|327311374|ref|YP_004338271.1| - 0.024 13.7 0.1 0.061 12.3 0.0 1.7 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_10 PF12846.2 gi|327311374|ref|YP_004338271.1| - 0.03 13.7 0.2 0.085 12.2 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain Viral_helicase1 PF01443.13 gi|327311374|ref|YP_004338271.1| - 0.032 13.7 0.0 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.17 gi|327311374|ref|YP_004338271.1| - 0.049 13.8 0.0 0.079 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase MobB PF03205.9 gi|327311374|ref|YP_004338271.1| - 0.057 13.1 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|327311374|ref|YP_004338271.1| - 0.058 12.8 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_11 PF13086.1 gi|327311374|ref|YP_004338271.1| - 0.066 12.7 0.0 0.76 9.2 0.0 2.0 1 1 1 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|327311374|ref|YP_004338271.1| - 0.068 12.1 0.0 0.091 11.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|327311374|ref|YP_004338271.1| - 0.071 12.7 0.0 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase APS_kinase PF01583.15 gi|327311374|ref|YP_004338271.1| - 0.079 12.6 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase RBD PF02196.10 gi|327311374|ref|YP_004338271.1| - 0.082 12.6 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Raf-like Ras-binding domain AAA_25 PF13481.1 gi|327311374|ref|YP_004338271.1| - 0.084 12.2 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|327311374|ref|YP_004338271.1| - 0.085 11.5 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_tran PF00005.22 gi|327311374|ref|YP_004338271.1| - 0.09 13.0 0.1 0.096 12.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter AAA_23 PF13476.1 gi|327311374|ref|YP_004338271.1| - 0.096 13.0 0.0 0.15 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain CoaE PF01121.15 gi|327311374|ref|YP_004338271.1| - 0.098 12.0 1.4 0.57 9.5 0.1 2.2 1 1 0 2 2 2 0 Dephospho-CoA kinase AAA_3 PF07726.6 gi|327311374|ref|YP_004338271.1| - 0.11 12.1 0.0 0.29 10.7 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|327311374|ref|YP_004338271.1| - 0.11 11.5 0.2 0.29 10.1 0.1 1.7 1 1 1 2 2 2 0 KaiC AAA_30 PF13604.1 gi|327311374|ref|YP_004338271.1| - 0.13 11.8 0.2 0.28 10.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|327311374|ref|YP_004338271.1| - 0.18 10.9 0.4 0.34 10.0 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Pyr_redox_2 PF07992.9 gi|327311375|ref|YP_004338272.1| - 1e-22 81.0 5.0 2.1e-09 37.5 0.1 4.1 2 2 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|327311375|ref|YP_004338272.1| - 1.7e-11 44.5 0.3 7e-06 26.2 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|327311375|ref|YP_004338272.1| - 6.5e-11 42.4 4.9 9.4e-06 25.9 0.4 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|327311375|ref|YP_004338272.1| - 6.3e-07 29.1 0.1 0.00022 20.8 0.0 3.0 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|327311375|ref|YP_004338272.1| - 5.7e-06 26.2 5.3 1.1e-05 25.3 0.4 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|327311375|ref|YP_004338272.1| - 7.4e-05 21.8 1.8 0.18 10.6 0.4 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|327311375|ref|YP_004338272.1| - 0.00015 21.9 0.3 0.13 12.5 0.0 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding HI0933_like PF03486.9 gi|327311375|ref|YP_004338272.1| - 0.00016 20.2 3.4 0.00029 19.4 0.2 2.3 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|327311375|ref|YP_004338272.1| - 0.00035 19.5 11.3 0.057 12.2 0.8 3.6 3 1 0 3 3 3 2 FAD binding domain Shikimate_DH PF01488.15 gi|327311375|ref|YP_004338272.1| - 0.00043 20.4 1.3 0.31 11.1 0.0 3.1 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase FMO-like PF00743.14 gi|327311375|ref|YP_004338272.1| - 0.00049 18.4 0.0 0.013 13.7 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like GIDA PF01134.17 gi|327311375|ref|YP_004338272.1| - 0.00066 18.6 4.0 0.18 10.6 0.3 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|327311375|ref|YP_004338272.1| - 0.0016 17.6 7.1 0.075 12.1 0.8 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|327311375|ref|YP_004338272.1| - 0.0069 15.3 0.0 0.12 11.2 0.0 2.5 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.14 gi|327311375|ref|YP_004338272.1| - 0.0098 15.0 0.1 0.22 10.6 0.0 2.6 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|327311375|ref|YP_004338272.1| - 0.017 14.8 0.7 0.36 10.4 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|327311375|ref|YP_004338272.1| - 0.018 14.1 5.7 0.2 10.6 0.1 2.4 3 0 0 3 3 3 0 FAD binding domain BcsB PF03170.8 gi|327311375|ref|YP_004338272.1| - 0.042 11.8 0.0 0.061 11.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial cellulose synthase subunit PcrB PF01884.12 gi|327311375|ref|YP_004338272.1| - 0.12 11.5 0.2 1.3 8.2 0.1 2.0 2 0 0 2 2 2 0 PcrB family Thi4 PF01946.12 gi|327311375|ref|YP_004338272.1| - 0.16 11.0 1.1 0.25 10.4 0.0 1.7 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.1 gi|327311375|ref|YP_004338272.1| - 0.17 11.6 4.3 0.39 10.4 0.4 3.0 4 0 0 4 4 4 0 FAD-NAD(P)-binding NAD_binding_10 PF13460.1 gi|327311375|ref|YP_004338272.1| - 0.19 11.7 3.2 5.7 6.8 0.0 3.5 3 1 0 4 4 4 0 NADH(P)-binding ETF PF01012.16 gi|327311376|ref|YP_004338273.1| - 2e-38 131.7 2.3 2.9e-38 131.1 1.6 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain TPR_10 PF13374.1 gi|327311376|ref|YP_004338273.1| - 0.071 13.0 0.7 0.23 11.4 0.5 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat Mastoparan PF08249.6 gi|327311376|ref|YP_004338273.1| - 0.92 10.2 3.8 4.1 8.1 2.6 2.1 1 0 0 1 1 1 0 Mastoparan protein ETF_alpha PF00766.14 gi|327311377|ref|YP_004338274.1| - 9.2e-30 102.1 0.0 1.7e-29 101.2 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|327311377|ref|YP_004338274.1| - 1.9e-17 63.4 1.1 3.4e-17 62.6 0.2 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein domain Topoisom_bac PF01131.15 gi|327311378|ref|YP_004338275.1| - 5.3e-89 298.8 0.0 7.9e-89 298.2 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|327311378|ref|YP_004338275.1| - 3.8e-19 68.5 0.0 2.4e-18 65.9 0.0 2.4 2 1 0 2 2 2 1 Toprim domain DEAD PF00270.24 gi|327311378|ref|YP_004338275.1| - 1.4e-13 50.6 0.0 5.5e-13 48.7 0.0 2.0 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|327311378|ref|YP_004338275.1| - 1.8e-06 27.7 0.0 0.56 10.1 0.0 3.6 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.10 gi|327311378|ref|YP_004338275.1| - 3.2e-05 23.8 0.0 6.2e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|327311378|ref|YP_004338275.1| - 0.015 14.7 0.9 0.057 12.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|327311378|ref|YP_004338275.1| - 0.041 13.3 0.0 0.1 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|327311378|ref|YP_004338275.1| - 0.062 13.0 0.1 0.25 11.1 0.1 2.1 1 0 0 1 1 1 0 Part of AAA domain ADH_zinc_N_2 PF13602.1 gi|327311378|ref|YP_004338275.1| - 0.099 13.5 1.1 1.5e+02 3.2 0.0 4.5 4 1 0 4 4 4 0 Zinc-binding dehydrogenase MobB PF03205.9 gi|327311378|ref|YP_004338275.1| - 0.2 11.3 0.1 1.1 9.0 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|327311378|ref|YP_004338275.1| - 0.31 11.3 2.3 6 7.1 0.1 2.7 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|327311378|ref|YP_004338275.1| - 0.44 10.3 2.2 0.88 9.3 0.2 2.5 3 0 0 3 3 3 0 Domain of unknown function DUF87 ABC2_membrane PF01061.19 gi|327311379|ref|YP_004338276.1| - 0.0028 16.8 21.9 0.0028 16.8 15.2 2.0 1 1 1 2 2 2 1 ABC-2 type transporter Pox_A9 PF04835.7 gi|327311379|ref|YP_004338276.1| - 3 7.8 5.6 0.98 9.3 1.2 2.2 2 0 0 2 2 2 0 A9 protein conserved region ABC2_membrane_3 PF12698.2 gi|327311379|ref|YP_004338276.1| - 8 5.3 38.9 3.2 6.7 25.1 1.6 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|327311380|ref|YP_004338277.1| - 1.6e-28 99.6 0.0 2.3e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327311380|ref|YP_004338277.1| - 3.5e-13 50.1 0.0 4.4e-08 33.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|327311380|ref|YP_004338277.1| - 0.00024 20.5 0.0 0.00047 19.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|327311380|ref|YP_004338277.1| - 0.00033 20.6 0.2 0.00098 19.1 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|327311380|ref|YP_004338277.1| - 0.0027 17.6 0.0 0.0071 16.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|327311380|ref|YP_004338277.1| - 0.003 17.1 0.0 0.0048 16.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|327311380|ref|YP_004338277.1| - 0.003 17.2 0.1 0.0064 16.2 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|327311380|ref|YP_004338277.1| - 0.0036 16.7 0.0 0.024 14.0 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain SMC_N PF02463.14 gi|327311380|ref|YP_004338277.1| - 0.0036 16.5 0.0 0.97 8.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|327311380|ref|YP_004338277.1| - 0.0054 17.0 0.0 0.0088 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|327311380|ref|YP_004338277.1| - 0.0065 16.6 0.2 0.036 14.2 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|327311380|ref|YP_004338277.1| - 0.01 15.5 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|327311380|ref|YP_004338277.1| - 0.015 15.0 0.3 0.015 15.0 0.2 2.1 2 1 0 2 2 2 0 Part of AAA domain KaiC PF06745.8 gi|327311380|ref|YP_004338277.1| - 0.016 14.3 0.0 2.8 7.0 0.0 2.2 2 0 0 2 2 2 0 KaiC MutS_V PF00488.16 gi|327311380|ref|YP_004338277.1| - 0.017 14.5 0.0 0.49 9.7 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_22 PF13401.1 gi|327311380|ref|YP_004338277.1| - 0.02 15.0 0.0 0.043 13.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|327311380|ref|YP_004338277.1| - 0.021 14.6 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_25 PF13481.1 gi|327311380|ref|YP_004338277.1| - 0.024 14.0 1.2 0.29 10.5 0.8 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|327311380|ref|YP_004338277.1| - 0.031 14.1 0.0 0.07 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|327311380|ref|YP_004338277.1| - 0.032 14.1 0.1 0.38 10.6 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|327311380|ref|YP_004338277.1| - 0.032 13.9 0.0 0.076 12.7 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase AAA_15 PF13175.1 gi|327311380|ref|YP_004338277.1| - 0.034 13.2 0.0 5.4 5.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|327311380|ref|YP_004338277.1| - 0.038 13.1 0.0 0.056 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|327311380|ref|YP_004338277.1| - 0.04 13.6 0.1 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|327311380|ref|YP_004338277.1| - 0.05 13.5 0.3 0.11 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|327311380|ref|YP_004338277.1| - 0.055 13.6 0.0 0.097 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_13 PF13166.1 gi|327311380|ref|YP_004338277.1| - 0.063 11.7 0.0 0.088 11.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain RecA PF00154.16 gi|327311380|ref|YP_004338277.1| - 0.078 12.0 0.0 0.16 10.9 0.0 1.5 1 0 0 1 1 1 0 recA bacterial DNA recombination protein cobW PF02492.14 gi|327311380|ref|YP_004338277.1| - 0.084 12.3 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|327311380|ref|YP_004338277.1| - 0.1 12.1 0.1 0.25 10.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|327311380|ref|YP_004338277.1| - 0.16 12.7 0.5 0.46 11.3 0.3 2.0 2 1 0 2 2 1 0 AAA domain QueF PF14489.1 gi|327311381|ref|YP_004338278.1| - 6.4e-11 42.0 0.1 6.9e-11 41.9 0.1 1.1 1 0 0 1 1 1 1 QueF-like protein GTP_cyclohydroI PF01227.17 gi|327311381|ref|YP_004338278.1| - 1.3e-05 24.6 0.1 1.5e-05 24.3 0.1 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I BPD_transp_1 PF00528.17 gi|327311383|ref|YP_004338280.1| - 6.9e-21 74.5 37.5 1.3e-13 50.8 10.9 2.9 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|327311384|ref|YP_004338281.1| - 1.1e-28 100.1 0.0 1.5e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327311384|ref|YP_004338281.1| - 1.6e-12 47.9 0.0 1.7e-06 28.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|327311384|ref|YP_004338281.1| - 9.9e-06 24.8 0.0 0.0047 16.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|327311384|ref|YP_004338281.1| - 6e-05 22.2 0.0 9.7e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|327311384|ref|YP_004338281.1| - 0.00012 22.4 0.1 0.00022 21.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327311384|ref|YP_004338281.1| - 0.00029 20.8 0.3 0.00055 19.9 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|327311384|ref|YP_004338281.1| - 0.00064 20.5 1.6 0.0053 17.5 0.4 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|327311384|ref|YP_004338281.1| - 0.00069 19.7 0.2 0.017 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|327311384|ref|YP_004338281.1| - 0.0008 18.8 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|327311384|ref|YP_004338281.1| - 0.0013 17.3 0.1 0.76 8.2 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class SMC_N PF02463.14 gi|327311384|ref|YP_004338281.1| - 0.0017 17.6 0.1 1.1 8.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|327311384|ref|YP_004338281.1| - 0.0022 18.2 0.0 0.015 15.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|327311384|ref|YP_004338281.1| - 0.0039 16.8 0.1 0.0079 15.9 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|327311384|ref|YP_004338281.1| - 0.014 14.8 0.1 0.031 13.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|327311384|ref|YP_004338281.1| - 0.039 12.8 0.0 0.067 12.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|327311384|ref|YP_004338281.1| - 0.054 13.0 0.1 0.093 12.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|327311384|ref|YP_004338281.1| - 0.066 13.0 0.1 0.1 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|327311384|ref|YP_004338281.1| - 0.069 12.8 0.3 0.13 11.9 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_10 PF12846.2 gi|327311384|ref|YP_004338281.1| - 0.085 12.2 1.2 0.24 10.7 0.1 2.1 2 1 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|327311384|ref|YP_004338281.1| - 0.091 11.9 0.0 0.23 10.5 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|327311384|ref|YP_004338281.1| - 0.096 12.9 0.9 0.21 11.8 0.4 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|327311384|ref|YP_004338281.1| - 0.11 12.3 0.3 0.36 10.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|327311384|ref|YP_004338281.1| - 0.16 11.9 0.4 0.44 10.5 0.2 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase Adeno_IVa2 PF02456.10 gi|327311384|ref|YP_004338281.1| - 0.18 10.4 0.1 0.27 9.8 0.1 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein Rad17 PF03215.10 gi|327311384|ref|YP_004338281.1| - 0.19 10.4 0.0 0.27 9.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Ribosomal_S28e PF01200.13 gi|327311385|ref|YP_004338282.1| - 4.2e-32 109.6 3.2 4.7e-32 109.5 2.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|327311385|ref|YP_004338282.1| - 0.54 10.0 0.3 0.54 10.0 0.2 2.7 3 1 0 3 3 3 0 KOW motif Ribosomal_L24e PF01246.15 gi|327311386|ref|YP_004338283.1| - 1.7e-19 69.4 0.6 1.8e-19 69.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|327311386|ref|YP_004338283.1| - 0.0013 18.3 0.4 0.0019 17.7 0.3 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-HIT PF04438.11 gi|327311386|ref|YP_004338283.1| - 0.0054 16.3 0.5 0.011 15.3 0.3 1.6 1 1 0 1 1 1 1 HIT zinc finger zf-ribbon_3 PF13248.1 gi|327311386|ref|YP_004338283.1| - 0.023 13.9 0.2 0.044 13.0 0.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|327311386|ref|YP_004338283.1| - 0.14 11.5 0.1 0.21 11.0 0.1 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-C4_ClpX PF06689.8 gi|327311386|ref|YP_004338283.1| - 0.18 11.3 0.1 0.18 11.3 0.1 1.5 2 0 0 2 2 2 0 ClpX C4-type zinc finger Ribosomal_L7Ae PF01248.21 gi|327311387|ref|YP_004338284.1| - 1.5e-29 101.3 0.5 2e-29 100.9 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|327311387|ref|YP_004338284.1| - 0.0026 17.4 0.1 0.0036 17.0 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.6 gi|327311387|ref|YP_004338284.1| - 0.003 17.4 0.0 0.0031 17.3 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 tRNA-synt_1d PF00750.14 gi|327311388|ref|YP_004338285.1| - 1.1e-46 159.3 0.0 6.1e-31 107.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|327311388|ref|YP_004338285.1| - 1.2e-28 99.4 0.0 7e-28 96.9 0.0 2.2 2 1 1 3 3 3 1 DALR anticodon binding domain tRNA-synt_1 PF00133.17 gi|327311388|ref|YP_004338285.1| - 0.0012 16.9 0.1 2.2 6.1 0.0 3.0 3 0 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|327311388|ref|YP_004338285.1| - 0.005 15.5 0.0 0.11 11.0 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|327311388|ref|YP_004338285.1| - 0.048 12.7 0.0 0.23 10.5 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain SelB-wing_1 PF09105.5 gi|327311389|ref|YP_004338286.1| - 0.12 12.0 0.5 0.19 11.4 0.2 1.5 1 1 0 1 1 1 0 Elongation factor SelB, winged helix SUI1 PF01253.17 gi|327311390|ref|YP_004338287.1| - 1.5e-19 69.6 1.2 2e-19 69.1 0.9 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 CcmH PF03918.9 gi|327311390|ref|YP_004338287.1| - 0.047 12.6 0.0 0.092 11.7 0.0 1.5 2 0 0 2 2 2 0 Cytochrome C biogenesis protein PNP_UDP_1 PF01048.15 gi|327311392|ref|YP_004338289.1| - 7.7e-40 136.3 0.0 8.8e-40 136.1 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NurA PF09376.5 gi|327311393|ref|YP_004338290.1| - 5.1e-25 88.3 0.0 1.2e-24 87.2 0.0 1.6 1 1 0 1 1 1 1 NurA domain Radical_SAM PF04055.16 gi|327311394|ref|YP_004338291.1| - 3.2e-21 76.2 0.1 7.1e-21 75.0 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|327311394|ref|YP_004338291.1| - 7.8e-06 25.9 0.0 1.2e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|327311394|ref|YP_004338291.1| - 0.0013 18.8 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Sigma70_r3 PF04539.11 gi|327311394|ref|YP_004338291.1| - 0.06 13.2 0.3 5.4 6.9 0.1 2.4 2 0 0 2 2 2 0 Sigma-70 region 3 Peripla_BP_2 PF01497.13 gi|327311395|ref|YP_004338292.1| - 1.1e-27 96.7 0.0 1.7e-27 96.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF4307 PF14155.1 gi|327311395|ref|YP_004338292.1| - 0.0009 19.0 6.8 0.0021 17.8 4.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4307) Mucin PF01456.12 gi|327311395|ref|YP_004338292.1| - 0.4 10.4 21.2 0.66 9.7 14.7 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF3439 PF11921.3 gi|327311395|ref|YP_004338292.1| - 4.5 7.0 15.1 8.2 6.2 10.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) FecCD PF01032.13 gi|327311396|ref|YP_004338293.1| - 6.9e-56 189.3 35.1 8e-56 189.1 24.3 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|327311396|ref|YP_004338293.1| - 0.0019 17.5 14.3 0.0039 16.5 9.9 1.7 1 1 0 1 1 1 1 ABC 3 transport family AAA_21 PF13304.1 gi|327311397|ref|YP_004338294.1| - 4.1e-18 66.3 0.0 1.1e-08 35.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|327311397|ref|YP_004338294.1| - 1.7e-17 63.9 0.0 1.3e-16 61.0 0.0 2.0 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|327311397|ref|YP_004338294.1| - 4.4e-10 39.1 0.0 0.00063 19.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|327311397|ref|YP_004338294.1| - 1.3e-07 32.1 0.0 2.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|327311397|ref|YP_004338294.1| - 5.1e-07 29.0 0.0 0.013 14.5 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|327311397|ref|YP_004338294.1| - 8.5e-05 22.0 0.0 0.00022 20.6 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|327311397|ref|YP_004338294.1| - 0.00028 20.7 0.0 0.001 18.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327311397|ref|YP_004338294.1| - 0.00039 20.4 0.0 0.00061 19.8 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|327311397|ref|YP_004338294.1| - 0.00089 18.9 0.3 0.0026 17.4 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain ABC_ATPase PF09818.4 gi|327311397|ref|YP_004338294.1| - 0.0014 17.3 0.0 0.012 14.2 0.0 1.9 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA PF00004.24 gi|327311397|ref|YP_004338294.1| - 0.0034 17.5 0.0 0.0078 16.4 0.0 1.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|327311397|ref|YP_004338294.1| - 0.0042 15.6 0.0 0.01 14.3 0.0 1.5 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|327311397|ref|YP_004338294.1| - 0.0063 15.6 0.0 0.027 13.5 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_10 PF12846.2 gi|327311397|ref|YP_004338294.1| - 0.0089 15.5 0.0 0.035 13.5 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.7 gi|327311397|ref|YP_004338294.1| - 0.0095 15.6 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain SbcCD_C PF13558.1 gi|327311397|ref|YP_004338294.1| - 0.016 15.0 0.0 0.15 12.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|327311397|ref|YP_004338294.1| - 0.02 15.0 0.0 0.032 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|327311397|ref|YP_004338294.1| - 0.022 14.4 0.1 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|327311397|ref|YP_004338294.1| - 0.024 15.4 0.1 0.058 14.2 0.0 1.8 2 1 0 2 2 1 0 AAA domain AAA_30 PF13604.1 gi|327311397|ref|YP_004338294.1| - 0.031 13.8 0.0 0.067 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|327311397|ref|YP_004338294.1| - 0.036 12.9 0.1 0.078 11.8 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_5 PF07728.9 gi|327311397|ref|YP_004338294.1| - 0.036 13.7 0.0 0.2 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|327311397|ref|YP_004338294.1| - 0.05 13.0 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family MobB PF03205.9 gi|327311397|ref|YP_004338294.1| - 0.058 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|327311397|ref|YP_004338294.1| - 0.066 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|327311397|ref|YP_004338294.1| - 0.072 13.0 0.0 0.41 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|327311397|ref|YP_004338294.1| - 0.082 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|327311397|ref|YP_004338294.1| - 0.11 12.0 0.1 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein G-alpha PF00503.15 gi|327311397|ref|YP_004338294.1| - 0.13 10.8 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit SRP54 PF00448.17 gi|327311397|ref|YP_004338294.1| - 0.16 11.3 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|327311397|ref|YP_004338294.1| - 0.17 12.4 0.0 0.39 11.2 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein DUF3584 PF12128.3 gi|327311397|ref|YP_004338294.1| - 0.18 9.0 0.0 0.25 8.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF131 PF01998.12 gi|327311398|ref|YP_004338295.1| - 3.1e-06 26.4 8.3 3.1e-06 26.4 5.8 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF998 PF06197.8 gi|327311398|ref|YP_004338295.1| - 0.066 12.5 12.7 0.075 12.3 8.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF998) NfeD PF01957.13 gi|327311398|ref|YP_004338295.1| - 4.4 7.4 11.8 4.9 7.2 8.2 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF1772 PF08592.6 gi|327311398|ref|YP_004338295.1| - 6.6 6.4 8.7 14 5.3 6.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) DUF131 PF01998.12 gi|327311399|ref|YP_004338296.1| - 1.5e-16 59.5 6.3 2.8e-16 58.5 4.4 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF131 Oxidored_q2 PF00420.19 gi|327311399|ref|YP_004338296.1| - 0.051 13.1 1.6 0.065 12.8 1.1 1.1 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF1180 PF06679.7 gi|327311399|ref|YP_004338296.1| - 0.15 11.9 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) 7tm_3 PF00003.17 gi|327311399|ref|YP_004338296.1| - 2.3 7.4 7.2 1.4 8.1 0.9 2.0 2 0 0 2 2 2 0 7 transmembrane sweet-taste receptor of 3 GCPR Wzy_C PF04932.10 gi|327311399|ref|YP_004338296.1| - 2.7 7.7 6.1 6.5 6.5 4.2 1.6 1 1 0 1 1 1 0 O-Antigen ligase DUF751 PF05421.6 gi|327311399|ref|YP_004338296.1| - 4.6 7.6 8.4 13 6.1 2.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF751) DUF1206 PF06724.6 gi|327311399|ref|YP_004338296.1| - 7.9 6.3 10.2 1.8 8.3 0.6 2.3 2 1 0 2 2 2 0 Domain of Unknown Function (DUF1206) 4HBT PF03061.17 gi|327311400|ref|YP_004338297.1| - 4.1e-16 58.8 0.3 5.8e-16 58.3 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|327311400|ref|YP_004338297.1| - 0.00058 19.6 0.1 0.00067 19.4 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.1 gi|327311400|ref|YP_004338297.1| - 0.066 13.1 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) DUF457 PF04307.9 gi|327311401|ref|YP_004338298.1| - 8.6e-07 28.4 12.0 2.1e-06 27.1 8.3 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF1286 PF06939.6 gi|327311401|ref|YP_004338298.1| - 0.00032 20.8 0.1 0.00065 19.8 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1286) TraT PF05818.7 gi|327311401|ref|YP_004338298.1| - 0.049 13.0 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF4514 PF14986.1 gi|327311401|ref|YP_004338298.1| - 0.049 13.4 0.8 1.8 8.4 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) Zn_dep_PLPC PF00882.13 gi|327311401|ref|YP_004338298.1| - 0.12 12.0 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 Zinc dependent phospholipase C ABC_tran PF00005.22 gi|327311403|ref|YP_004338300.1| - 7.7e-26 91.0 0.0 9.7e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327311403|ref|YP_004338300.1| - 1.7e-13 51.1 0.1 4.6e-06 26.8 0.0 2.0 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|327311403|ref|YP_004338300.1| - 0.00043 19.7 0.3 0.00078 18.9 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|327311403|ref|YP_004338300.1| - 0.02 15.2 0.0 0.023 15.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|327311403|ref|YP_004338300.1| - 0.033 13.5 0.3 0.05 12.9 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|327311403|ref|YP_004338300.1| - 0.035 14.1 1.1 0.098 12.6 0.7 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|327311403|ref|YP_004338300.1| - 0.036 13.1 0.0 3 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|327311403|ref|YP_004338300.1| - 0.11 12.0 0.2 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|327311403|ref|YP_004338300.1| - 0.13 13.1 0.2 0.24 12.2 0.2 1.5 1 1 0 1 1 1 0 AAA domain Trm112p PF03966.11 gi|327311405|ref|YP_004338302.1| - 3.9e-18 65.5 1.5 6.5e-18 64.8 1.1 1.4 1 0 0 1 1 1 1 Trm112p-like protein zf-ribbon_3 PF13248.1 gi|327311405|ref|YP_004338302.1| - 0.029 13.5 0.3 0.029 13.5 0.2 2.1 3 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327311405|ref|YP_004338302.1| - 0.053 13.0 0.4 0.053 13.0 0.3 2.3 2 1 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|327311405|ref|YP_004338302.1| - 0.16 11.6 0.5 0.23 11.1 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|327311405|ref|YP_004338302.1| - 0.19 11.5 3.8 0.61 9.9 2.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF329 PF03884.9 gi|327311405|ref|YP_004338302.1| - 0.53 9.8 4.7 1.7 8.2 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF329) DUF164 PF02591.10 gi|327311405|ref|YP_004338302.1| - 0.62 9.9 4.9 4.3 7.2 2.4 2.6 2 1 1 3 3 3 0 Putative zinc ribbon domain Phosphoesterase PF04185.9 gi|327311407|ref|YP_004338304.1| - 2.8e-65 220.9 0.2 8e-65 219.4 0.1 1.8 1 1 0 1 1 1 1 Phosphoesterase family Sulfatase PF00884.18 gi|327311407|ref|YP_004338304.1| - 0.047 12.8 0.0 0.42 9.7 0.0 2.1 2 0 0 2 2 2 0 Sulfatase NTP_transf_2 PF01909.18 gi|327311409|ref|YP_004338306.1| - 1.2e-05 25.4 0.0 1.8e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Glyco_trans_1_4 PF13692.1 gi|327311409|ref|YP_004338306.1| - 0.091 12.9 0.0 0.13 12.4 0.0 1.4 1 1 0 1 1 1 0 Glycosyl transferases group 1 Kelch_4 PF13418.1 gi|327311409|ref|YP_004338306.1| - 0.092 12.5 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Galactose oxidase, central domain Asp_protease_2 PF13650.1 gi|327311411|ref|YP_004338308.1| - 0.00029 21.2 0.0 0.00069 20.0 0.0 1.6 1 1 1 2 2 2 1 Aspartyl protease RVP PF00077.15 gi|327311411|ref|YP_004338308.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.5 1 1 0 1 1 1 0 Retroviral aspartyl protease V_ATPase_I PF01496.14 gi|327311412|ref|YP_004338309.1| - 4.8e-25 87.5 6.5 1.6e-17 62.6 0.0 2.4 2 0 0 2 2 2 2 V-type ATPase 116kDa subunit family GerE PF00196.14 gi|327311413|ref|YP_004338310.1| - 0.007 15.6 0.1 0.012 14.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family COX1 PF00115.15 gi|327311414|ref|YP_004338311.1| - 2.2e-20 72.7 48.6 2.2e-20 72.7 33.7 2.2 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF3154 PF11351.3 gi|327311414|ref|YP_004338311.1| - 5.5 6.7 12.7 0.81 9.4 0.7 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3154) MFS_1 PF07690.11 gi|327311415|ref|YP_004338312.1| - 1.5e-21 76.5 57.8 2.6e-14 52.7 15.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MS_channel PF00924.13 gi|327311416|ref|YP_004338313.1| - 7.6e-18 64.5 7.4 7.6e-18 64.5 5.1 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF2523 PF10734.4 gi|327311416|ref|YP_004338313.1| - 0.02 15.1 1.8 0.02 15.1 1.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2523) CdhC PF03598.10 gi|327311416|ref|YP_004338313.1| - 0.11 10.8 0.1 0.14 10.6 0.1 1.1 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase complex beta subunit RDD PF06271.7 gi|327311416|ref|YP_004338313.1| - 0.41 10.5 9.6 0.07 13.0 2.6 2.1 2 0 0 2 2 2 0 RDD family DUF4117 PF13491.1 gi|327311416|ref|YP_004338313.1| - 0.59 9.5 15.7 0.21 11.0 8.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4117) Gly-zipper_OmpA PF13436.1 gi|327311416|ref|YP_004338313.1| - 2.2 7.9 11.5 3.4 7.3 8.0 1.3 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Bacteriocin_IIc PF10439.4 gi|327311416|ref|YP_004338313.1| - 4.1 7.6 15.7 4.8 7.3 10.3 1.6 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide PaREP1 PF05942.6 gi|327311417|ref|YP_004338314.1| - 2e-31 108.2 2.4 2.7e-31 107.8 1.7 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|327311417|ref|YP_004338314.1| - 2.2 8.1 5.3 1.6 8.6 1.8 1.8 2 0 0 2 2 2 0 HEPN domain IF2_N PF04760.10 gi|327311418|ref|YP_004338315.1| - 0.067 12.8 0.1 0.38 10.4 0.0 2.0 1 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Antitoxin-MazE PF04014.13 gi|327311418|ref|YP_004338315.1| - 0.37 10.5 2.4 14 5.4 0.1 2.3 2 0 0 2 2 2 0 Antidote-toxin recognition MazE Amidohydro_4 PF13147.1 gi|327311423|ref|YP_004338320.1| - 1.2e-15 58.2 9.5 7.6e-15 55.6 6.6 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|327311423|ref|YP_004338320.1| - 1.6e-14 54.2 0.0 2.7e-14 53.5 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|327311423|ref|YP_004338320.1| - 2.8e-08 33.4 0.0 5.1e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|327311423|ref|YP_004338320.1| - 0.35 10.0 7.6 6.8 5.7 0.9 3.1 2 1 0 3 3 3 0 Amidohydrolase family Radical_SAM PF04055.16 gi|327311424|ref|YP_004338321.1| - 7.9e-16 58.6 0.0 1.6e-15 57.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|327311425|ref|YP_004338322.1| - 6e-12 46.0 0.0 1.1e-11 45.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily VitK2_biosynth PF02621.9 gi|327311426|ref|YP_004338323.1| - 9e-30 103.6 0.0 1e-29 103.4 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis VitK2_biosynth PF02621.9 gi|327311427|ref|YP_004338324.1| - 7.2e-68 228.4 0.0 8.1e-68 228.3 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis DUF165 PF02592.10 gi|327311428|ref|YP_004338325.1| - 4.6e-27 94.9 5.6 4.6e-27 94.9 3.9 1.7 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 AsnC_trans_reg PF01037.16 gi|327311429|ref|YP_004338326.1| - 0.0041 16.7 0.0 0.0064 16.1 0.0 1.3 1 1 0 1 1 1 1 AsnC family Peptidase_S8 PF00082.17 gi|327311430|ref|YP_004338327.1| - 7.7e-06 25.2 1.3 1.1e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 Subtilase family Pro-kuma_activ PF09286.6 gi|327311430|ref|YP_004338327.1| - 0.00022 21.2 0.0 0.00037 20.5 0.0 1.3 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain CytB6-F_Fe-S PF08802.5 gi|327311430|ref|YP_004338327.1| - 0.068 13.1 1.8 0.34 10.9 1.2 2.3 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit 4HB_MCP_1 PF12729.2 gi|327311431|ref|YP_004338328.1| - 0.016 14.5 3.0 0.018 14.4 2.0 1.2 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Flg_bb_rod PF00460.15 gi|327311431|ref|YP_004338328.1| - 4.2 7.1 6.5 7.3 6.4 4.5 1.4 1 0 0 1 1 1 0 Flagella basal body rod protein Thermopsin PF05317.6 gi|327311432|ref|YP_004338329.1| - 1.2e-63 214.5 23.9 1.3e-63 214.4 16.6 1.0 1 0 0 1 1 1 1 Thermopsin Hemopexin PF00045.14 gi|327311432|ref|YP_004338329.1| - 0.26 11.0 3.9 0.9 9.3 0.3 2.5 2 0 0 2 2 2 0 Hemopexin Glycos_trans_3N PF02885.12 gi|327311433|ref|YP_004338330.1| - 0.014 14.9 1.5 0.7 9.5 0.0 2.4 2 1 0 2 2 2 0 Glycosyl transferase family, helical bundle domain Lactamase_B PF00753.22 gi|327311434|ref|YP_004338331.1| - 6.2e-05 22.7 6.7 0.00066 19.3 4.6 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|327311434|ref|YP_004338331.1| - 0.006 16.1 0.1 0.0084 15.6 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain SIR2 PF02146.12 gi|327311435|ref|YP_004338332.1| - 2e-55 187.2 0.0 2.4e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.5 gi|327311435|ref|YP_004338332.1| - 0.0052 16.7 0.5 0.0091 15.9 0.4 1.3 1 0 0 1 1 1 1 Zinc ribbon domain Mu-like_Com PF10122.4 gi|327311435|ref|YP_004338332.1| - 0.056 12.5 0.9 0.096 11.7 0.6 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com SprT-like PF10263.4 gi|327311435|ref|YP_004338332.1| - 0.072 12.7 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 SprT-like family zinc_ribbon_2 PF13240.1 gi|327311435|ref|YP_004338332.1| - 0.079 12.4 4.7 1.7 8.1 3.8 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|327311435|ref|YP_004338332.1| - 0.091 12.5 0.2 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|327311435|ref|YP_004338332.1| - 0.097 12.3 0.1 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|327311435|ref|YP_004338332.1| - 0.34 10.1 2.7 7.9 5.8 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|327311435|ref|YP_004338332.1| - 0.38 10.7 2.0 0.7 9.9 1.4 1.4 1 0 0 1 1 1 0 zinc-finger DUF35_N PF12172.3 gi|327311435|ref|YP_004338332.1| - 1.2 9.0 5.6 11 6.0 0.7 2.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF164 PF02591.10 gi|327311435|ref|YP_004338332.1| - 2.2 8.1 6.3 3.5 7.5 2.1 2.7 2 1 0 2 2 2 0 Putative zinc ribbon domain Nudix_N_2 PF14803.1 gi|327311435|ref|YP_004338332.1| - 6.7 6.4 6.1 17 5.1 0.6 2.1 1 1 2 3 3 3 0 Nudix N-terminal Lon_C PF05362.8 gi|327311436|ref|YP_004338333.1| - 1.3e-11 44.2 3.5 2.9e-11 43.0 2.4 1.5 1 1 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain MerC PF03203.9 gi|327311437|ref|YP_004338334.1| - 0.81 10.0 3.8 0.8 10.0 1.9 1.5 1 1 0 1 1 1 0 MerC mercury resistance protein DoxX_2 PF13564.1 gi|327311437|ref|YP_004338334.1| - 2 8.4 9.3 2.9 7.9 6.4 1.4 1 1 0 1 1 1 0 DoxX-like family Trp_oprn_chp PF09534.5 gi|327311437|ref|YP_004338334.1| - 5.1 6.6 9.7 6.6 6.2 6.7 1.4 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF805 PF05656.9 gi|327311437|ref|YP_004338334.1| - 9.9 6.0 7.0 6.1 6.6 3.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF805) HHH PF00633.18 gi|327311439|ref|YP_004338336.1| - 3.7e-06 26.3 0.0 9.9e-06 24.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HRDC PF00570.18 gi|327311439|ref|YP_004338336.1| - 0.011 15.4 0.1 0.031 14.0 0.0 1.8 2 0 0 2 2 2 0 HRDC domain HHH_5 PF14520.1 gi|327311439|ref|YP_004338336.1| - 0.082 13.0 0.2 0.41 10.8 0.0 1.9 2 1 0 2 2 2 0 Helix-hairpin-helix domain Radical_SAM PF04055.16 gi|327311440|ref|YP_004338337.1| - 2.6e-18 66.7 0.0 3.6e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|327311440|ref|YP_004338337.1| - 4.3e-09 36.4 0.0 6.3e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|327311440|ref|YP_004338337.1| - 3.6e-07 30.3 0.0 5.2e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain RelB_N PF12910.2 gi|327311441|ref|YP_004338338.1| - 0.11 11.8 0.2 0.3 10.4 0.2 1.7 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin stability system N-terminal GIY-YIG PF01541.19 gi|327311442|ref|YP_004338339.1| - 0.0065 16.8 0.0 0.0097 16.2 0.0 1.2 1 0 0 1 1 1 1 GIY-YIG catalytic domain PUA PF01472.15 gi|327311444|ref|YP_004338341.1| - 3.4e-14 52.3 0.0 5e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|327311444|ref|YP_004338341.1| - 8.6e-06 25.5 0.0 1.5e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase FAINT PF04385.10 gi|327311444|ref|YP_004338341.1| - 0.068 13.0 2.2 0.12 12.2 1.5 1.4 1 0 0 1 1 1 0 Domain of unknown function, DUF529 DUF1947 PF09183.5 gi|327311444|ref|YP_004338341.1| - 0.072 12.8 1.0 0.11 12.2 0.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) TruB-C_2 PF09157.6 gi|327311444|ref|YP_004338341.1| - 0.091 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal HTH_3 PF01381.17 gi|327311445|ref|YP_004338342.1| - 1.8e-12 46.8 0.6 3e-12 46.1 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|327311445|ref|YP_004338342.1| - 1.4e-08 34.7 0.9 1.4e-08 34.7 0.6 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|327311445|ref|YP_004338342.1| - 2.6e-08 33.8 0.1 7.7e-08 32.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|327311445|ref|YP_004338342.1| - 0.00011 21.7 0.4 0.0003 20.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|327311445|ref|YP_004338342.1| - 0.00059 19.9 0.4 0.00089 19.3 0.3 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain IER PF05760.7 gi|327311445|ref|YP_004338342.1| - 0.086 12.7 0.2 0.096 12.6 0.1 1.0 1 0 0 1 1 1 0 Immediate early response protein (IER) Nudix_N_2 PF14803.1 gi|327311445|ref|YP_004338342.1| - 0.088 12.5 0.4 0.21 11.2 0.3 1.7 1 0 0 1 1 1 0 Nudix N-terminal CENP-B_N PF04218.8 gi|327311445|ref|YP_004338342.1| - 0.13 11.6 0.1 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain MMR_HSR1 PF01926.18 gi|327311446|ref|YP_004338343.1| - 5.3e-17 61.8 0.0 8.8e-17 61.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|327311446|ref|YP_004338343.1| - 4.5e-13 49.1 0.0 9.8e-13 48.0 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|327311446|ref|YP_004338343.1| - 1.5e-05 24.3 0.0 2.7e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.4 gi|327311446|ref|YP_004338343.1| - 0.0027 17.2 0.0 2.8 7.4 0.0 2.6 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|327311446|ref|YP_004338343.1| - 0.0028 17.0 0.0 0.61 9.4 0.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_28 PF13521.1 gi|327311446|ref|YP_004338343.1| - 0.011 15.6 0.1 0.028 14.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|327311446|ref|YP_004338343.1| - 0.024 13.8 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|327311446|ref|YP_004338343.1| - 0.042 13.2 0.0 0.092 12.1 0.0 1.5 1 1 0 1 1 1 0 Ras family MobB PF03205.9 gi|327311446|ref|YP_004338343.1| - 0.081 12.6 0.0 0.14 11.8 0.0 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|327311446|ref|YP_004338343.1| - 0.14 11.8 1.4 1 9.0 0.1 2.5 2 1 1 3 3 3 0 NTPase DUF258 PF03193.11 gi|327311446|ref|YP_004338343.1| - 0.17 11.1 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TFIIE_alpha PF02002.12 gi|327311447|ref|YP_004338344.1| - 4.1e-06 26.2 0.4 4.1e-06 26.2 0.3 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit zinc_ribbon_4 PF13717.1 gi|327311447|ref|YP_004338344.1| - 0.023 14.3 1.5 0.078 12.6 1.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327311447|ref|YP_004338344.1| - 0.027 13.8 2.6 0.07 12.4 1.8 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|327311447|ref|YP_004338344.1| - 0.031 13.8 1.4 0.1 12.2 0.9 1.9 1 1 0 1 1 1 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|327311447|ref|YP_004338344.1| - 0.035 13.8 0.5 0.28 10.9 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Phage_rep_org_N PF09681.5 gi|327311447|ref|YP_004338344.1| - 0.045 13.3 0.5 0.071 12.6 0.0 1.6 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.7 gi|327311447|ref|YP_004338344.1| - 0.082 12.5 0.9 0.15 11.7 0.1 1.8 2 0 0 2 2 2 0 HTH domain TrmB PF01978.14 gi|327311447|ref|YP_004338344.1| - 0.11 12.2 0.3 0.54 10.0 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB zf-Di19 PF05605.7 gi|327311447|ref|YP_004338344.1| - 0.38 10.9 1.9 12 6.0 0.1 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-RING_4 PF14570.1 gi|327311447|ref|YP_004338344.1| - 1.6 8.3 5.2 7.2 6.2 0.9 2.0 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain Sgf11 PF08209.6 gi|327311447|ref|YP_004338344.1| - 2.5 7.4 4.5 1 8.7 0.6 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Prok-RING_4 PF14447.1 gi|327311447|ref|YP_004338344.1| - 5 6.7 5.4 22 4.7 0.4 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 PAC2 PF09754.4 gi|327311448|ref|YP_004338345.1| - 6.5e-29 101.3 0.0 7.6e-29 101.1 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT PF01702.13 gi|327311449|ref|YP_004338346.1| - 7e-45 153.1 0.0 1e-44 152.6 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Lsm_C PF14894.1 gi|327311450|ref|YP_004338347.1| - 3.3e-27 93.7 0.8 5.1e-27 93.1 0.6 1.3 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.17 gi|327311450|ref|YP_004338347.1| - 2.8e-10 39.6 1.4 2.9e-10 39.5 0.2 1.6 2 0 0 2 2 2 1 LSM domain SM-ATX PF14438.1 gi|327311450|ref|YP_004338347.1| - 5.8e-07 29.3 0.0 8.2e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF4138 PF13595.1 gi|327311451|ref|YP_004338348.1| - 0.017 14.0 0.4 0.019 13.9 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4138) MP PF01107.13 gi|327311451|ref|YP_004338348.1| - 0.031 13.6 0.1 0.037 13.3 0.0 1.1 1 0 0 1 1 1 0 Viral movement protein (MP) TFIIB PF00382.14 gi|327311452|ref|YP_004338349.1| - 0.0032 17.2 0.0 0.0075 16.0 0.0 1.6 1 1 1 2 2 2 2 Transcription factor TFIIB repeat DUF3508 PF12018.3 gi|327311452|ref|YP_004338349.1| - 0.058 12.3 0.2 0.063 12.2 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3508) T2SE PF00437.15 gi|327311453|ref|YP_004338350.1| - 3.4e-15 55.6 0.0 7.7e-15 54.5 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|327311453|ref|YP_004338350.1| - 2.5e-05 25.0 0.1 9.8e-05 23.1 0.0 2.1 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|327311453|ref|YP_004338350.1| - 6.7e-05 23.2 0.4 0.0002 21.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|327311453|ref|YP_004338350.1| - 0.00055 19.6 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|327311453|ref|YP_004338350.1| - 0.0011 18.4 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|327311453|ref|YP_004338350.1| - 0.0018 18.4 4.7 0.0068 16.5 0.2 3.2 2 2 2 4 4 3 1 AAA domain AAA_21 PF13304.1 gi|327311453|ref|YP_004338350.1| - 0.0019 18.1 8.1 0.0045 17.0 0.3 2.7 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|327311453|ref|YP_004338350.1| - 0.0031 17.2 0.0 0.0051 16.4 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.1 gi|327311453|ref|YP_004338350.1| - 0.0036 17.2 4.4 0.0042 16.9 0.0 2.7 2 1 1 3 3 3 1 AAA domain NTPase_1 PF03266.10 gi|327311453|ref|YP_004338350.1| - 0.0037 17.0 0.0 0.15 11.7 0.0 2.4 2 0 0 2 2 2 1 NTPase Zeta_toxin PF06414.7 gi|327311453|ref|YP_004338350.1| - 0.0038 16.3 0.0 0.0076 15.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Bac_DnaA PF00308.13 gi|327311453|ref|YP_004338350.1| - 0.004 16.8 0.0 0.011 15.3 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_29 PF13555.1 gi|327311453|ref|YP_004338350.1| - 0.0059 16.1 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|327311453|ref|YP_004338350.1| - 0.011 15.4 0.2 0.026 14.2 0.1 1.7 1 1 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|327311453|ref|YP_004338350.1| - 0.012 15.8 0.3 0.034 14.3 0.0 2.0 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|327311453|ref|YP_004338350.1| - 0.013 14.9 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|327311453|ref|YP_004338350.1| - 0.019 14.9 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|327311453|ref|YP_004338350.1| - 0.028 14.3 0.0 0.051 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|327311453|ref|YP_004338350.1| - 0.039 14.2 0.0 0.086 13.1 0.0 1.7 2 0 0 2 2 1 0 ABC transporter Viral_helicase1 PF01443.13 gi|327311453|ref|YP_004338350.1| - 0.042 13.3 0.0 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DEAD PF00270.24 gi|327311453|ref|YP_004338350.1| - 0.042 13.3 0.2 0.9 9.0 0.0 2.6 2 1 1 3 3 3 0 DEAD/DEAH box helicase PduV-EutP PF10662.4 gi|327311453|ref|YP_004338350.1| - 0.043 13.3 0.0 0.081 12.4 0.0 1.6 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.1 gi|327311453|ref|YP_004338350.1| - 0.043 13.3 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|327311453|ref|YP_004338350.1| - 0.045 12.9 0.0 0.075 12.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|327311453|ref|YP_004338350.1| - 0.056 12.8 0.0 0.12 11.7 0.0 1.6 2 0 0 2 2 1 0 AAA-like domain AAA_28 PF13521.1 gi|327311453|ref|YP_004338350.1| - 0.057 13.3 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|327311453|ref|YP_004338350.1| - 0.059 12.8 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|327311453|ref|YP_004338350.1| - 0.075 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|327311453|ref|YP_004338350.1| - 0.086 12.4 0.0 0.27 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|327311453|ref|YP_004338350.1| - 0.087 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_11 PF13086.1 gi|327311453|ref|YP_004338350.1| - 0.13 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|327311453|ref|YP_004338350.1| - 0.18 12.0 8.5 0.28 11.4 2.7 2.6 2 1 0 2 2 2 0 AAA domain DUF3784 PF12650.2 gi|327311454|ref|YP_004338351.1| - 0.02 14.8 5.4 0.02 14.8 3.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) Cation_efflux PF01545.16 gi|327311454|ref|YP_004338351.1| - 0.92 8.5 13.2 0.035 13.1 1.6 2.1 1 1 1 2 2 2 0 Cation efflux family DUF454 PF04304.8 gi|327311454|ref|YP_004338351.1| - 3.9 7.5 21.9 0.59 10.2 4.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF454) Cpn60_TCP1 PF00118.19 gi|327311455|ref|YP_004338352.1| - 1.3e-169 564.9 4.8 1.5e-169 564.7 3.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.12 gi|327311455|ref|YP_004338352.1| - 8.8e-05 22.2 2.3 0.14 11.8 0.7 2.4 2 0 0 2 2 2 2 DAK2 domain DUF59 PF01883.14 gi|327311455|ref|YP_004338352.1| - 0.068 13.1 2.4 9.1 6.3 0.1 3.5 3 0 0 3 3 3 0 Domain of unknown function DUF59 Ribosomal_S17e PF00833.13 gi|327311456|ref|YP_004338353.1| - 5.7e-18 64.8 0.2 6.6e-18 64.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 HhH-GPD PF00730.20 gi|327311456|ref|YP_004338353.1| - 0.076 13.2 0.2 0.084 13.1 0.1 1.0 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein FKBP_C PF00254.23 gi|327311457|ref|YP_004338354.1| - 3.1e-11 43.1 0.0 4.8e-11 42.5 0.0 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Proteasome PF00227.21 gi|327311458|ref|YP_004338355.1| - 1.3e-51 174.6 0.0 1.6e-51 174.3 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|327311459|ref|YP_004338356.1| - 5e-32 110.4 0.0 2.2e-31 108.4 0.0 2.2 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|327311459|ref|YP_004338356.1| - 1.2e-20 74.0 0.3 2.1e-20 73.1 0.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|327311459|ref|YP_004338356.1| - 8.2e-14 51.1 0.0 2.2e-13 49.7 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|327311459|ref|YP_004338356.1| - 2.7e-11 43.3 0.0 9.8e-11 41.5 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|327311459|ref|YP_004338356.1| - 0.0058 16.3 0.1 0.11 12.2 0.0 2.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain LSM PF01423.17 gi|327311460|ref|YP_004338357.1| - 1.1e-21 76.1 0.5 1.2e-21 75.9 0.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|327311460|ref|YP_004338357.1| - 3.3e-05 23.7 0.0 4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|327311461|ref|YP_004338358.1| - 5.8e-18 64.4 12.6 6.1e-18 64.3 8.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|327311461|ref|YP_004338358.1| - 0.0041 16.8 2.1 0.005 16.6 1.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|327311461|ref|YP_004338358.1| - 0.01 15.0 5.0 0.016 14.4 3.4 1.4 1 1 0 1 1 1 1 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|327311461|ref|YP_004338358.1| - 0.055 13.1 5.0 0.13 11.8 3.5 1.7 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Cys_rich_CPCC PF14206.1 gi|327311461|ref|YP_004338358.1| - 0.075 12.5 0.4 0.086 12.4 0.3 1.1 1 0 0 1 1 1 0 Cysteine-rich CPCC NMD3 PF04981.8 gi|327311461|ref|YP_004338358.1| - 0.08 12.0 0.7 0.084 11.9 0.5 1.1 1 0 0 1 1 1 0 NMD3 family Zn-ribbon_8 PF09723.5 gi|327311461|ref|YP_004338358.1| - 0.082 12.8 2.2 0.31 11.0 0.1 2.0 1 1 1 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|327311461|ref|YP_004338358.1| - 0.13 12.1 2.2 0.16 11.8 1.5 1.4 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF2752 PF10825.3 gi|327311461|ref|YP_004338358.1| - 0.26 11.3 1.2 8.6 6.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zinc_ribbon_2 PF13240.1 gi|327311461|ref|YP_004338358.1| - 0.3 10.6 5.9 0.82 9.2 4.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|327311461|ref|YP_004338358.1| - 0.37 10.4 3.9 0.44 10.2 2.7 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|327311461|ref|YP_004338358.1| - 0.61 9.9 7.8 2.5 7.9 5.4 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Mu-like_Com PF10122.4 gi|327311461|ref|YP_004338358.1| - 0.62 9.1 4.5 0.14 11.2 1.2 1.5 1 1 0 1 1 1 0 Mu-like prophage protein Com DUF164 PF02591.10 gi|327311461|ref|YP_004338358.1| - 0.68 9.8 3.7 0.87 9.4 0.3 2.1 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-Mss51 PF13824.1 gi|327311461|ref|YP_004338358.1| - 0.95 9.3 4.6 0.87 9.4 0.3 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.4 gi|327311461|ref|YP_004338358.1| - 1.2 8.8 5.6 9.1 6.0 1.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|327311461|ref|YP_004338358.1| - 1.5 9.0 6.5 10 6.3 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-NADH-PPase PF09297.6 gi|327311461|ref|YP_004338358.1| - 2.3 7.8 10.3 0.51 9.8 0.8 2.4 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain FdhE PF04216.7 gi|327311461|ref|YP_004338358.1| - 3.1 7.4 5.2 3.1 7.4 3.6 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DNA_RNApol_7kD PF03604.8 gi|327311461|ref|YP_004338358.1| - 3.2 7.2 6.2 1.4 8.4 0.7 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DNA_pol_B PF00136.16 gi|327311462|ref|YP_004338359.1| - 6.8e-93 311.9 0.3 9.4e-93 311.5 0.2 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|327311462|ref|YP_004338359.1| - 1.8e-34 119.0 0.0 1.7e-33 115.8 0.0 2.4 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|327311462|ref|YP_004338359.1| - 2.3e-08 34.0 0.0 5.4e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|327311462|ref|YP_004338359.1| - 1.6e-06 27.8 0.0 3.6e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Toprim_4 PF13662.1 gi|327311463|ref|YP_004338360.1| - 5.9e-07 29.4 0.6 2.2e-06 27.5 0.4 2.1 1 1 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|327311463|ref|YP_004338360.1| - 0.029 14.3 0.7 0.16 11.9 0.1 2.5 2 0 0 2 2 2 0 Toprim domain Peptidase_M24 PF00557.19 gi|327311464|ref|YP_004338361.1| - 2.8e-43 147.9 0.1 3.5e-43 147.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 FHA PF00498.21 gi|327311465|ref|YP_004338362.1| - 1.1e-14 54.2 0.0 1.4e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 FHA domain zf-RanBP PF00641.13 gi|327311465|ref|YP_004338362.1| - 2.2e-05 23.4 0.7 3.2e-05 22.9 0.5 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.1 gi|327311465|ref|YP_004338362.1| - 3.4e-05 23.1 1.2 5.6e-05 22.4 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327311465|ref|YP_004338362.1| - 7.9e-05 21.7 0.7 0.00012 21.1 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|327311465|ref|YP_004338362.1| - 0.00039 20.1 0.8 0.00055 19.6 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-Sec23_Sec24 PF04810.10 gi|327311465|ref|YP_004338362.1| - 0.059 12.9 3.3 0.099 12.2 0.1 2.1 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger TF_Zn_Ribbon PF08271.7 gi|327311465|ref|YP_004338362.1| - 0.33 10.3 2.4 0.81 9.0 1.6 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding RecR PF02132.10 gi|327311465|ref|YP_004338362.1| - 0.52 9.7 2.6 1.1 8.8 1.8 1.5 1 0 0 1 1 1 0 RecR protein UPF0547 PF10571.4 gi|327311465|ref|YP_004338362.1| - 0.54 10.0 3.1 1 9.0 2.1 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Pkinase PF00069.20 gi|327311466|ref|YP_004338363.1| - 1.6e-40 138.9 0.0 2.8e-40 138.1 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|327311466|ref|YP_004338363.1| - 2.7e-24 85.6 0.0 4.4e-24 84.9 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.1 gi|327311466|ref|YP_004338363.1| - 0.016 14.1 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Kinase-like DUF4481 PF14800.1 gi|327311466|ref|YP_004338363.1| - 0.61 8.9 7.1 1.1 8.1 4.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) Radical_SAM PF04055.16 gi|327311467|ref|YP_004338364.1| - 1.6e-27 96.6 0.0 2.5e-27 96.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|327311467|ref|YP_004338364.1| - 3e-22 78.6 0.0 4.5e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|327311467|ref|YP_004338364.1| - 1.7e-06 28.0 0.0 3.6e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|327311467|ref|YP_004338364.1| - 5.8e-06 26.4 0.0 1.1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_1 PF00126.22 gi|327311468|ref|YP_004338365.1| - 4.7e-12 45.4 0.0 6.8e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.1 gi|327311468|ref|YP_004338365.1| - 6.4e-05 22.6 0.1 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.1 gi|327311468|ref|YP_004338365.1| - 0.0016 18.5 0.0 0.0024 17.9 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|327311468|ref|YP_004338365.1| - 0.0042 17.0 0.1 0.012 15.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|327311468|ref|YP_004338365.1| - 0.013 14.8 0.0 0.025 13.9 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding TBCA PF02970.11 gi|327311468|ref|YP_004338365.1| - 0.017 15.1 0.1 0.026 14.5 0.1 1.3 1 0 0 1 1 1 0 Tubulin binding cofactor A DUF1539 PF07560.6 gi|327311468|ref|YP_004338365.1| - 0.022 14.6 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1539) HTH_23 PF13384.1 gi|327311468|ref|YP_004338365.1| - 0.035 13.7 0.0 0.076 12.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MoaC PF01967.16 gi|327311469|ref|YP_004338366.1| - 8.7e-20 70.7 0.0 1.5e-09 37.6 0.0 3.3 2 1 0 2 2 2 2 MoaC family dCMP_cyt_deam_1 PF00383.17 gi|327311470|ref|YP_004338367.1| - 1.4e-20 72.7 0.3 1.7e-20 72.5 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|327311470|ref|YP_004338367.1| - 1.7e-12 47.3 0.3 2.6e-12 46.8 0.2 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|327311470|ref|YP_004338367.1| - 3.3e-05 23.3 0.5 0.011 15.1 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases YwqJ-deaminase PF14431.1 gi|327311470|ref|YP_004338367.1| - 0.2 11.5 0.5 13 5.6 0.1 2.3 1 1 1 2 2 2 0 YwqJ-like deaminase adh_short_C2 PF13561.1 gi|327311472|ref|YP_004338369.1| - 7.1e-33 114.3 0.0 8.3e-33 114.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|327311472|ref|YP_004338369.1| - 9.7e-25 87.4 0.0 1.7e-24 86.6 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|327311472|ref|YP_004338369.1| - 5.5e-11 42.4 0.1 9e-11 41.7 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|327311472|ref|YP_004338369.1| - 0.00012 22.1 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|327311472|ref|YP_004338369.1| - 0.00077 18.5 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|327311472|ref|YP_004338369.1| - 0.011 16.2 0.4 0.026 14.9 0.3 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|327311472|ref|YP_004338369.1| - 0.05 13.2 0.1 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|327311472|ref|YP_004338369.1| - 0.15 11.3 0.4 0.24 10.6 0.3 1.3 1 0 0 1 1 1 0 NmrA-like family SHMT PF00464.14 gi|327311473|ref|YP_004338370.1| - 6.7e-70 235.4 0.0 8.7e-70 235.0 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|327311473|ref|YP_004338370.1| - 0.00011 21.3 0.0 0.00026 20.0 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|327311473|ref|YP_004338370.1| - 0.00034 19.7 0.1 0.0015 17.6 0.0 2.1 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family ADH_zinc_N PF00107.21 gi|327311473|ref|YP_004338370.1| - 0.043 13.3 0.0 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase SelA PF03841.8 gi|327311473|ref|YP_004338370.1| - 0.12 11.0 0.0 0.48 9.1 0.0 2.0 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase ParA PF10609.4 gi|327311474|ref|YP_004338371.1| - 2.7e-28 97.6 0.1 5.1e-28 96.7 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|327311474|ref|YP_004338371.1| - 7.5e-10 38.5 0.1 1.2e-09 37.8 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|327311474|ref|YP_004338371.1| - 0.00036 19.6 3.0 0.00046 19.3 1.3 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|327311474|ref|YP_004338371.1| - 0.005 16.7 0.0 0.021 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|327311474|ref|YP_004338371.1| - 0.0091 14.7 0.5 0.02 13.7 0.4 1.5 1 0 0 1 1 1 1 ArgK protein AAA_26 PF13500.1 gi|327311474|ref|YP_004338371.1| - 0.019 14.6 0.2 0.86 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|327311474|ref|YP_004338371.1| - 0.02 14.3 0.0 0.41 10.0 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|327311474|ref|YP_004338371.1| - 0.028 13.8 0.1 0.06 12.7 0.1 1.6 1 0 0 1 1 1 0 AAA-like domain MipZ PF09140.6 gi|327311474|ref|YP_004338371.1| - 0.065 12.3 0.0 0.094 11.7 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ APS_kinase PF01583.15 gi|327311474|ref|YP_004338371.1| - 0.066 12.8 0.1 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Fer4_NifH PF00142.13 gi|327311474|ref|YP_004338371.1| - 0.067 12.3 0.2 0.34 10.0 0.1 2.0 2 1 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Ribosomal_S2 PF00318.15 gi|327311476|ref|YP_004338373.1| - 1.4e-40 138.7 0.0 8e-22 77.4 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.12 gi|327311477|ref|YP_004338374.1| - 1.4e-72 243.8 0.0 1.6e-72 243.6 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|327311477|ref|YP_004338374.1| - 7.9e-08 31.6 0.0 6.9e-07 28.5 0.0 1.9 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase FMN_dh PF01070.13 gi|327311478|ref|YP_004338375.1| - 5.9e-32 110.8 0.2 7.3e-18 64.5 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|327311478|ref|YP_004338375.1| - 2.2e-08 33.3 0.5 7.8e-06 25.0 0.3 2.5 3 0 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|327311478|ref|YP_004338375.1| - 0.00065 18.7 2.7 0.17 10.7 1.8 2.7 2 1 0 2 2 2 2 Conserved region in glutamate synthase TruD PF01142.13 gi|327311478|ref|YP_004338375.1| - 0.028 13.0 0.0 0.038 12.6 0.0 1.1 1 0 0 1 1 1 0 tRNA pseudouridine synthase D (TruD) DUF4473 PF14747.1 gi|327311479|ref|YP_004338376.1| - 0.024 14.8 0.3 0.035 14.3 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4473) ADSL_C PF10397.4 gi|327311479|ref|YP_004338376.1| - 0.042 13.8 0.2 0.056 13.4 0.1 1.2 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus PSD5 PF07637.6 gi|327311479|ref|YP_004338376.1| - 0.12 12.3 0.4 0.23 11.5 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1595) Ribosomal_L2_C PF03947.13 gi|327311480|ref|YP_004338377.1| - 1.8e-36 124.8 0.9 2.5e-36 124.3 0.6 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|327311480|ref|YP_004338377.1| - 1.2e-08 34.7 0.3 6.3e-08 32.4 0.0 2.3 2 1 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain tRNA_int_endo PF01974.12 gi|327311481|ref|YP_004338378.1| - 0.00031 20.4 0.0 0.00053 19.7 0.0 1.3 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain Sen15 PF09631.5 gi|327311481|ref|YP_004338378.1| - 0.013 15.7 0.2 0.047 13.9 0.0 1.8 1 1 1 2 2 2 0 Sen15 protein HTH_39 PF14090.1 gi|327311481|ref|YP_004338378.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PK PF00224.16 gi|327311483|ref|YP_004338380.1| - 8.1e-73 245.0 0.1 1.1e-72 244.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|327311483|ref|YP_004338380.1| - 1.9e-13 49.9 0.0 9.7e-13 47.6 0.0 2.3 1 1 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|327311483|ref|YP_004338380.1| - 5.6e-05 22.1 0.3 0.00011 21.2 0.2 1.5 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PaREP1 PF05942.6 gi|327311484|ref|YP_004338381.1| - 1.8e-28 98.6 2.2 2.5e-28 98.2 1.6 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family gag-asp_proteas PF13975.1 gi|327311485|ref|YP_004338382.1| - 1e-08 34.8 0.1 1e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.1 gi|327311485|ref|YP_004338382.1| - 2.3e-05 24.7 0.0 2.6e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|327311485|ref|YP_004338382.1| - 0.0037 17.1 0.0 0.0037 17.1 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease tRNA-synt_1e PF01406.14 gi|327311486|ref|YP_004338383.1| - 5.8e-109 363.8 0.0 8.9e-109 363.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|327311486|ref|YP_004338383.1| - 3.3e-09 35.2 0.0 6.4e-09 34.3 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|327311486|ref|YP_004338383.1| - 1.9e-08 33.4 0.1 5.6e-06 25.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|327311486|ref|YP_004338383.1| - 2.9e-08 33.8 0.3 1.2e-07 31.8 0.0 2.0 1 1 1 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|327311486|ref|YP_004338383.1| - 8.3e-08 31.2 0.0 0.0001 21.0 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) Baculo_gp41 PF04700.7 gi|327311486|ref|YP_004338383.1| - 0.0059 16.0 0.0 0.0092 15.4 0.0 1.3 1 0 0 1 1 1 1 Structural glycoprotein p40/gp41 conserved region KaiA PF07688.7 gi|327311486|ref|YP_004338383.1| - 0.0089 15.3 0.3 0.014 14.7 0.2 1.2 1 0 0 1 1 1 1 KaiA domain Enolase_C PF00113.17 gi|327311487|ref|YP_004338384.1| - 5.7e-52 176.5 0.0 7.3e-52 176.1 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|327311487|ref|YP_004338384.1| - 3.9e-35 120.6 0.1 6.6e-35 119.9 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|327311487|ref|YP_004338384.1| - 2.2e-05 24.9 0.1 0.00031 21.1 0.0 2.8 1 1 1 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|327311487|ref|YP_004338384.1| - 0.0045 16.9 1.1 0.013 15.4 0.0 2.3 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.6 gi|327311487|ref|YP_004338384.1| - 0.0097 14.8 0.0 0.018 14.0 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Zfx_Zfy_act PF04704.8 gi|327311487|ref|YP_004338384.1| - 0.2 10.4 0.0 0.32 9.7 0.0 1.3 1 0 0 1 1 1 0 Zfx / Zfy transcription activation region SpoIIIAH PF12685.2 gi|327311488|ref|YP_004338385.1| - 0.58 9.6 4.2 1.3 8.5 2.9 1.5 1 0 0 1 1 1 0 SpoIIIAH-like protein Gag_spuma PF03276.9 gi|327311488|ref|YP_004338385.1| - 5.2 5.2 6.7 7.5 4.7 4.6 1.1 1 0 0 1 1 1 0 Spumavirus gag protein Rifin_STEVOR PF02009.11 gi|327311489|ref|YP_004338386.1| - 7.9 6.0 1.2 15 5.0 0.9 1.4 1 0 0 1 1 1 0 Rifin/stevor family AMMECR1 PF01871.12 gi|327311490|ref|YP_004338387.1| - 2e-15 56.3 0.0 2.6e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 DUF1525 PF07511.6 gi|327311491|ref|YP_004338388.1| - 2.2e-05 24.3 0.6 7.3e-05 22.7 0.4 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1525) Thioredoxin_3 PF13192.1 gi|327311491|ref|YP_004338388.1| - 0.023 14.5 0.1 0.065 13.0 0.0 2.0 2 0 0 2 2 2 0 Thioredoxin domain TPR_21 PF09976.4 gi|327311491|ref|YP_004338388.1| - 0.037 13.9 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat DHC_N2 PF08393.8 gi|327311491|ref|YP_004338388.1| - 0.17 10.3 0.0 0.21 10.0 0.0 1.0 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 2 CYTH PF01928.16 gi|327311492|ref|YP_004338389.1| - 6.3e-32 110.7 3.7 7e-32 110.5 2.5 1.0 1 0 0 1 1 1 1 CYTH domain Ribosomal_L12 PF00542.14 gi|327311492|ref|YP_004338389.1| - 0.018 15.0 0.9 0.81 9.7 0.1 2.5 2 1 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain DNA_ligase_A_M PF01068.16 gi|327311493|ref|YP_004338390.1| - 6.4e-59 198.7 0.0 1.3e-58 197.7 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|327311493|ref|YP_004338390.1| - 1.1e-51 175.1 0.2 1.8e-51 174.4 0.1 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|327311493|ref|YP_004338390.1| - 2e-23 82.6 0.0 6.1e-23 81.0 0.0 1.9 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|327311493|ref|YP_004338390.1| - 0.0049 16.5 0.5 0.019 14.6 0.0 2.3 3 0 0 3 3 3 1 DNA ligase OB-like domain ATP-synt_10 PF05176.9 gi|327311494|ref|YP_004338391.1| - 0.075 12.2 0.4 8.4 5.5 0.0 2.0 2 0 0 2 2 2 0 ATP10 protein Vps51 PF08700.6 gi|327311494|ref|YP_004338391.1| - 0.1 12.4 0.9 12 5.8 0.1 2.4 2 0 0 2 2 2 0 Vps51/Vps67 PfkB PF00294.19 gi|327311495|ref|YP_004338392.1| - 8.3e-60 202.4 2.7 1e-59 202.1 1.9 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|327311495|ref|YP_004338392.1| - 5.8e-06 25.6 0.1 8.5e-06 25.1 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Tower PF09121.5 gi|327311496|ref|YP_004338393.1| - 0.054 13.4 0.1 11 5.9 0.0 2.4 2 0 0 2 2 2 0 Tower NTP_transferase PF00483.18 gi|327311497|ref|YP_004338394.1| - 4.1e-25 88.5 0.0 5.2e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|327311497|ref|YP_004338394.1| - 2.3e-12 47.2 0.2 2.6e-12 47.1 0.2 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF357 PF04010.8 gi|327311497|ref|YP_004338394.1| - 0.15 11.7 0.3 11 5.7 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF357) Med28 PF11594.3 gi|327311498|ref|YP_004338395.1| - 0.00027 21.1 2.7 0.00027 21.1 1.8 1.9 1 1 0 1 1 1 1 Mediator complex subunit 28 DASH_Spc19 PF08287.6 gi|327311498|ref|YP_004338395.1| - 0.0045 16.6 5.3 0.37 10.4 0.0 2.7 1 1 1 2 2 2 2 Spc19 DUF787 PF05619.6 gi|327311498|ref|YP_004338395.1| - 0.012 14.2 0.9 0.031 12.9 0.6 1.6 1 1 1 2 2 2 0 Borrelia burgdorferi protein of unknown function (DUF787) CorA PF01544.13 gi|327311498|ref|YP_004338395.1| - 0.013 14.5 4.2 0.017 14.1 2.9 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein NPV_P10 PF05531.7 gi|327311498|ref|YP_004338395.1| - 0.02 15.1 1.3 0.073 13.3 0.0 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|327311498|ref|YP_004338395.1| - 0.058 13.2 0.3 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Wx5_PLAF3D7 PF09688.5 gi|327311498|ref|YP_004338395.1| - 0.063 13.2 1.8 0.14 12.1 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (Wx5_PLAF3D7) RhoGAP PF00620.22 gi|327311498|ref|YP_004338395.1| - 0.1 12.2 0.6 0.16 11.5 0.4 1.4 1 0 0 1 1 1 0 RhoGAP domain POX PF07526.6 gi|327311498|ref|YP_004338395.1| - 0.2 11.8 2.4 0.23 11.6 0.1 2.0 2 0 0 2 2 2 0 Associated with HOX Syntaxin-6_N PF09177.6 gi|327311498|ref|YP_004338395.1| - 0.22 11.9 4.9 0.14 12.5 0.5 2.5 1 1 3 4 4 4 0 Syntaxin 6, N-terminal Fib_alpha PF08702.5 gi|327311498|ref|YP_004338395.1| - 0.32 11.0 4.6 1.4 9.0 0.1 2.7 2 2 0 2 2 2 0 Fibrinogen alpha/beta chain family CCDC-167 PF15188.1 gi|327311498|ref|YP_004338395.1| - 0.39 10.6 11.4 6.3 6.8 0.1 3.3 2 1 0 3 3 3 0 Coiled-coil domain-containing protein 167 GvpG PF05120.7 gi|327311498|ref|YP_004338395.1| - 0.43 10.4 0.1 0.43 10.4 0.1 3.5 4 0 0 4 4 4 0 Gas vesicle protein G DUF342 PF03961.8 gi|327311498|ref|YP_004338395.1| - 0.64 8.3 4.0 0.72 8.1 2.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF342) TcdB_N PF12918.2 gi|327311498|ref|YP_004338395.1| - 0.8 9.8 5.9 23 5.1 0.1 3.5 4 0 0 4 4 3 0 TcdB toxin N-terminal helical domain PXA PF02194.10 gi|327311498|ref|YP_004338395.1| - 0.86 9.1 4.8 0.26 10.8 0.6 2.0 1 1 1 2 2 2 0 PXA domain GAS PF13851.1 gi|327311498|ref|YP_004338395.1| - 2.3 7.3 14.1 3.2 6.9 5.8 2.4 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding TMF_DNA_bd PF12329.3 gi|327311498|ref|YP_004338395.1| - 9.3 6.1 13.6 3.4 7.5 0.3 3.9 3 1 0 3 3 3 0 TATA element modulatory factor 1 DNA binding Tropomyosin PF00261.15 gi|327311499|ref|YP_004338396.1| - 0.002 17.2 8.8 0.002 17.2 6.1 1.8 1 1 0 2 2 2 1 Tropomyosin IncA PF04156.9 gi|327311499|ref|YP_004338396.1| - 0.0045 16.6 5.0 0.0061 16.1 3.5 1.2 1 0 0 1 1 1 1 IncA protein AAA_13 PF13166.1 gi|327311499|ref|YP_004338396.1| - 0.0062 15.0 2.2 0.0077 14.7 1.5 1.0 1 0 0 1 1 1 1 AAA domain CorA PF01544.13 gi|327311499|ref|YP_004338396.1| - 0.015 14.3 1.5 0.019 13.9 1.1 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2968 PF11180.3 gi|327311499|ref|YP_004338396.1| - 0.051 12.9 2.2 0.064 12.6 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Snapin_Pallidin PF14712.1 gi|327311499|ref|YP_004338396.1| - 0.058 13.6 1.3 0.17 12.2 0.6 2.0 1 1 0 1 1 1 0 Snapin/Pallidin bZIP_2 PF07716.10 gi|327311499|ref|YP_004338396.1| - 0.072 12.9 4.9 3 7.7 0.7 2.7 2 0 0 2 2 2 0 Basic region leucine zipper OmpH PF03938.9 gi|327311499|ref|YP_004338396.1| - 0.074 12.9 3.9 0.11 12.4 2.7 1.4 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Spc7 PF08317.6 gi|327311499|ref|YP_004338396.1| - 0.091 11.4 3.6 0.12 10.9 2.5 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Syntaxin PF00804.20 gi|327311499|ref|YP_004338396.1| - 0.14 12.3 1.7 4 7.6 0.7 2.2 1 1 1 2 2 2 0 Syntaxin APG6 PF04111.7 gi|327311499|ref|YP_004338396.1| - 0.19 10.7 3.9 0.28 10.1 2.6 1.3 1 1 0 1 1 1 0 Autophagy protein Apg6 BLOC1_2 PF10046.4 gi|327311499|ref|YP_004338396.1| - 0.27 11.3 2.2 6.3 7.0 0.1 3.0 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1640 PF07798.6 gi|327311499|ref|YP_004338396.1| - 0.42 10.6 4.5 0.6 10.1 3.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) DUF1910 PF08928.5 gi|327311499|ref|YP_004338396.1| - 0.44 10.5 3.0 0.74 9.8 1.4 1.8 2 1 0 2 2 1 0 Domain of unknown function (DUF1910) DUF2730 PF10805.3 gi|327311499|ref|YP_004338396.1| - 0.44 10.3 4.1 6.3 6.5 0.3 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2730) Osmo_CC PF08946.5 gi|327311499|ref|YP_004338396.1| - 0.51 10.4 3.5 5.4 7.1 0.4 2.9 3 0 0 3 3 3 0 Osmosensory transporter coiled coil Prefoldin_2 PF01920.15 gi|327311499|ref|YP_004338396.1| - 0.85 9.4 5.3 6.4 6.5 0.3 3.1 2 1 1 3 3 3 0 Prefoldin subunit CCDC-167 PF15188.1 gi|327311499|ref|YP_004338396.1| - 0.96 9.4 6.3 1.8 8.5 0.4 3.1 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 Cortex-I_coil PF09304.5 gi|327311499|ref|YP_004338396.1| - 1.6 8.7 12.0 1.9 8.5 6.0 2.5 1 1 2 3 3 3 0 Cortexillin I, coiled coil DivIC PF04977.10 gi|327311499|ref|YP_004338396.1| - 4.1 6.9 10.4 2.2 7.8 2.2 2.9 2 2 0 3 3 3 0 Septum formation initiator TSKS PF15358.1 gi|327311499|ref|YP_004338396.1| - 5.4 5.0 8.3 5.4 5.0 1.8 2.1 2 0 0 2 2 2 0 Testis-specific serine kinase substrate TMF_DNA_bd PF12329.3 gi|327311499|ref|YP_004338396.1| - 6.9 6.5 11.7 2 8.3 1.4 3.4 4 0 0 4 4 3 0 TATA element modulatory factor 1 DNA binding DMRL_synthase PF00885.14 gi|327311500|ref|YP_004338397.1| - 1.6e-37 128.3 3.1 1.8e-37 128.2 2.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.1 gi|327311500|ref|YP_004338397.1| - 0.077 12.1 0.1 0.12 11.5 0.1 1.3 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily MarR_2 PF12802.2 gi|327311501|ref|YP_004338398.1| - 0.00013 21.5 0.0 0.00016 21.2 0.0 1.0 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|327311501|ref|YP_004338398.1| - 0.00099 18.7 0.2 0.0013 18.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|327311501|ref|YP_004338398.1| - 0.0012 18.3 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|327311501|ref|YP_004338398.1| - 0.009 15.4 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|327311501|ref|YP_004338398.1| - 0.014 15.5 0.0 0.016 15.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|327311501|ref|YP_004338398.1| - 0.046 13.2 0.0 0.054 13.0 0.0 1.1 1 0 0 1 1 1 0 LexA DNA binding domain DUF2582 PF10771.4 gi|327311501|ref|YP_004338398.1| - 0.047 13.5 0.0 0.062 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) z-alpha PF02295.12 gi|327311501|ref|YP_004338398.1| - 0.047 13.4 0.0 0.055 13.2 0.0 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF1495 PF07381.6 gi|327311501|ref|YP_004338398.1| - 0.052 13.2 0.0 0.062 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) FaeA PF04703.7 gi|327311501|ref|YP_004338398.1| - 0.082 13.0 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein polyprenyl_synt PF00348.12 gi|327311502|ref|YP_004338399.1| - 1.2e-25 89.8 0.2 6.2e-25 87.5 0.1 1.8 1 1 0 1 1 1 1 Polyprenyl synthetase PaREP1 PF05942.6 gi|327311503|ref|YP_004338400.1| - 0.0068 16.2 0.3 0.0085 15.9 0.2 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family GFO_IDH_MocA PF01408.17 gi|327311505|ref|YP_004338402.1| - 3.2e-16 59.9 0.0 4.8e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|327311505|ref|YP_004338402.1| - 1.1e-05 25.1 0.0 3e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|327311505|ref|YP_004338402.1| - 0.00035 20.8 0.1 0.0028 17.9 0.1 2.3 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|327311505|ref|YP_004338402.1| - 0.0042 17.5 0.0 0.0076 16.7 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain CopB PF05275.6 gi|327311505|ref|YP_004338402.1| - 0.079 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Copper resistance protein B precursor (CopB) LpxK PF02606.9 gi|327311506|ref|YP_004338403.1| - 0.064 12.2 0.3 0.13 11.2 0.0 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase Bac_DnaA PF00308.13 gi|327311506|ref|YP_004338403.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein VIT1 PF01988.14 gi|327311508|ref|YP_004338405.1| - 0.00045 19.7 19.3 0.048 13.1 13.3 2.3 1 1 0 1 1 1 1 VIT family Cyt_c_ox_IV PF12270.3 gi|327311508|ref|YP_004338405.1| - 0.77 9.5 3.8 0.87 9.3 1.3 2.0 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV DUF211 PF02680.9 gi|327311509|ref|YP_004338406.1| - 5.1e-26 90.3 6.0 5.5e-26 90.2 4.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 NikR_C PF08753.6 gi|327311509|ref|YP_004338406.1| - 0.0019 18.0 1.6 0.28 11.1 0.5 2.1 2 0 0 2 2 2 2 NikR C terminal nickel binding domain TruB_N PF01509.13 gi|327311510|ref|YP_004338407.1| - 4.2e-24 85.4 0.1 1.5e-20 73.8 0.0 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|327311510|ref|YP_004338407.1| - 3.9e-21 74.5 0.0 9.9e-21 73.2 0.0 1.7 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.7 gi|327311510|ref|YP_004338407.1| - 8.4e-17 60.8 0.1 2.1e-16 59.5 0.1 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain Ribosomal_L14e PF01929.12 gi|327311511|ref|YP_004338408.1| - 3.1e-05 24.2 0.3 5.2e-05 23.5 0.1 1.4 2 0 0 2 2 2 1 Ribosomal protein L14 KOW PF00467.24 gi|327311511|ref|YP_004338408.1| - 0.025 14.2 6.6 0.068 12.9 4.6 1.8 1 0 0 1 1 1 0 KOW motif CxxCxxCC PF03692.10 gi|327311512|ref|YP_004338409.1| - 4.3e-10 39.9 0.9 6.3e-10 39.4 0.6 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Fer4 PF00037.22 gi|327311513|ref|YP_004338410.1| - 6.1e-07 28.7 11.7 0.00024 20.5 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|327311513|ref|YP_004338410.1| - 5.3e-05 23.5 6.4 0.0073 16.6 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327311513|ref|YP_004338410.1| - 0.00087 19.0 7.7 0.0018 17.9 5.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327311513|ref|YP_004338410.1| - 0.0017 18.1 16.6 0.011 15.6 3.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|327311513|ref|YP_004338410.1| - 0.0018 18.0 6.0 0.004 16.9 4.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327311513|ref|YP_004338410.1| - 0.0066 16.3 13.6 0.083 12.8 2.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|327311513|ref|YP_004338410.1| - 0.015 15.5 10.6 0.09 13.0 7.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327311513|ref|YP_004338410.1| - 0.078 13.7 0.7 0.078 13.7 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|327311513|ref|YP_004338410.1| - 3.4 7.7 11.9 0.31 11.1 1.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain zf-CSL PF05207.8 gi|327311513|ref|YP_004338410.1| - 7.1 6.2 9.2 13 5.3 6.4 1.4 1 0 0 1 1 1 0 CSL zinc finger Fer4_4 PF12800.2 gi|327311513|ref|YP_004338410.1| - 9 6.9 14.2 1.5 9.3 2.1 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|327311513|ref|YP_004338410.1| - 9.3 6.6 11.5 0.6 10.4 1.6 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF99 PF01949.11 gi|327311514|ref|YP_004338411.1| - 6e-48 162.4 0.0 7e-48 162.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Ribosomal_S7 PF00177.16 gi|327311516|ref|YP_004338413.1| - 7.4e-45 152.1 0.0 8.8e-45 151.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Rep_fac_C PF08542.6 gi|327311517|ref|YP_004338414.1| - 6.8e-17 61.2 0.0 1.7e-16 59.9 0.0 1.7 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|327311517|ref|YP_004338414.1| - 1.4e-16 60.9 0.0 9.4e-16 58.2 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|327311517|ref|YP_004338414.1| - 6.1e-15 55.2 0.0 4.9e-10 39.3 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|327311517|ref|YP_004338414.1| - 9e-11 41.1 0.0 8.7e-05 21.3 0.0 2.2 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|327311517|ref|YP_004338414.1| - 7.6e-10 38.2 0.0 2.7e-09 36.4 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|327311517|ref|YP_004338414.1| - 1.9e-08 34.5 0.1 0.0043 17.1 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|327311517|ref|YP_004338414.1| - 2e-08 34.4 0.3 0.00034 20.6 0.0 3.2 1 1 2 3 3 3 1 AAA ATPase domain AAA_14 PF13173.1 gi|327311517|ref|YP_004338414.1| - 3.5e-07 30.1 0.0 7.3e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|327311517|ref|YP_004338414.1| - 2e-05 23.5 0.0 0.015 14.0 0.0 2.6 3 0 0 3 3 3 2 TIP49 C-terminus AAA_3 PF07726.6 gi|327311517|ref|YP_004338414.1| - 2.1e-05 24.1 0.0 4.1e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|327311517|ref|YP_004338414.1| - 3e-05 23.5 1.5 0.00013 21.4 0.1 2.5 2 2 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|327311517|ref|YP_004338414.1| - 4e-05 23.2 0.2 0.00028 20.5 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|327311517|ref|YP_004338414.1| - 4.7e-05 23.7 0.0 0.00039 20.7 0.0 2.1 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|327311517|ref|YP_004338414.1| - 4.8e-05 22.6 0.0 0.0012 18.0 0.0 2.5 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|327311517|ref|YP_004338414.1| - 5.3e-05 24.0 0.0 0.00016 22.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_24 PF13479.1 gi|327311517|ref|YP_004338414.1| - 7.2e-05 22.4 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|327311517|ref|YP_004338414.1| - 8.4e-05 22.3 0.1 0.0004 20.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|327311517|ref|YP_004338414.1| - 0.00038 19.7 0.1 0.19 10.9 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein IstB_IS21 PF01695.12 gi|327311517|ref|YP_004338414.1| - 0.00051 19.4 0.0 0.0019 17.6 0.0 1.9 1 1 0 1 1 1 1 IstB-like ATP binding protein DEAD PF00270.24 gi|327311517|ref|YP_004338414.1| - 0.00096 18.6 0.1 0.037 13.5 0.0 2.4 1 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_10 PF12846.2 gi|327311517|ref|YP_004338414.1| - 0.0015 18.0 0.2 1.9 7.8 0.1 2.6 2 1 1 3 3 3 2 AAA-like domain AAA_11 PF13086.1 gi|327311517|ref|YP_004338414.1| - 0.0036 16.8 0.0 0.012 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|327311517|ref|YP_004338414.1| - 0.0041 16.8 0.0 0.41 10.3 0.0 2.6 2 1 1 3 3 3 1 Archaeal ATPase RNA_helicase PF00910.17 gi|327311517|ref|YP_004338414.1| - 0.0041 17.2 0.0 0.012 15.7 0.0 1.8 2 0 0 2 2 1 1 RNA helicase FtsK_SpoIIIE PF01580.13 gi|327311517|ref|YP_004338414.1| - 0.0048 16.4 0.5 0.21 11.0 0.0 2.8 3 1 0 3 3 3 1 FtsK/SpoIIIE family Sigma54_activ_2 PF14532.1 gi|327311517|ref|YP_004338414.1| - 0.0062 16.5 0.0 0.023 14.7 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|327311517|ref|YP_004338414.1| - 0.008 16.0 0.0 0.019 14.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|327311517|ref|YP_004338414.1| - 0.013 14.4 0.0 0.12 11.2 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|327311517|ref|YP_004338414.1| - 0.015 14.2 0.0 0.19 10.6 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|327311517|ref|YP_004338414.1| - 0.015 14.8 1.0 0.16 11.5 0.1 2.5 2 1 0 2 2 2 0 AAA domain DNA_pol3_delta PF06144.8 gi|327311517|ref|YP_004338414.1| - 0.017 14.6 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_28 PF13521.1 gi|327311517|ref|YP_004338414.1| - 0.019 14.9 0.0 0.047 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|327311517|ref|YP_004338414.1| - 0.031 13.8 0.0 0.048 13.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|327311517|ref|YP_004338414.1| - 0.034 13.9 0.0 0.3 10.8 0.0 2.0 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit ArgK PF03308.11 gi|327311517|ref|YP_004338414.1| - 0.043 12.5 0.3 2.7 6.6 0.0 2.5 2 1 1 3 3 3 0 ArgK protein KTI12 PF08433.5 gi|327311517|ref|YP_004338414.1| - 0.044 13.0 0.0 0.083 12.0 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_2 PF07724.9 gi|327311517|ref|YP_004338414.1| - 0.07 13.0 0.0 0.24 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) PEPCK_ATP PF01293.15 gi|327311517|ref|YP_004338414.1| - 0.098 11.1 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase ABC_tran PF00005.22 gi|327311517|ref|YP_004338414.1| - 0.12 12.6 0.0 0.51 10.6 0.0 2.0 2 2 0 2 2 2 0 ABC transporter NACHT PF05729.7 gi|327311517|ref|YP_004338414.1| - 0.13 11.8 0.0 3.1 7.4 0.0 2.3 1 1 0 1 1 1 0 NACHT domain SNF2_N PF00176.18 gi|327311517|ref|YP_004338414.1| - 0.13 11.0 0.0 0.61 8.8 0.0 1.8 1 1 1 2 2 2 0 SNF2 family N-terminal domain Parvo_NS1 PF01057.12 gi|327311517|ref|YP_004338414.1| - 0.17 10.7 0.0 0.28 10.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_13 PF13166.1 gi|327311517|ref|YP_004338414.1| - 0.19 10.1 0.0 2 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|327311518|ref|YP_004338415.1| - 8.7e-16 58.3 0.0 3.2e-15 56.5 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|327311518|ref|YP_004338415.1| - 2.9e-09 36.1 0.1 0.00045 19.0 0.0 2.5 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein TIP49 PF06068.8 gi|327311518|ref|YP_004338415.1| - 3e-08 32.8 2.4 0.00032 19.5 0.0 2.7 3 0 0 3 3 3 2 TIP49 C-terminus RuvB_N PF05496.7 gi|327311518|ref|YP_004338415.1| - 4.2e-08 32.5 0.1 7.2e-06 25.2 0.0 2.7 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|327311518|ref|YP_004338415.1| - 2.4e-07 30.9 0.5 0.00012 22.1 0.0 3.4 3 1 0 3 3 2 1 AAA domain AAA_16 PF13191.1 gi|327311518|ref|YP_004338415.1| - 1.2e-06 28.6 0.1 1.8e-05 24.7 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|327311518|ref|YP_004338415.1| - 1.2e-06 28.2 0.0 4.6e-06 26.3 0.0 2.1 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|327311518|ref|YP_004338415.1| - 3.3e-06 27.9 0.1 9e-06 26.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|327311518|ref|YP_004338415.1| - 1.1e-05 25.0 0.2 0.00024 20.7 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain Zeta_toxin PF06414.7 gi|327311518|ref|YP_004338415.1| - 1.2e-05 24.5 0.0 2.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin DNA_pol3_delta PF06144.8 gi|327311518|ref|YP_004338415.1| - 2e-05 24.1 0.0 0.00023 20.7 0.0 2.4 2 1 0 2 2 2 1 DNA polymerase III, delta subunit RNA_helicase PF00910.17 gi|327311518|ref|YP_004338415.1| - 3.8e-05 23.7 0.0 0.00032 20.8 0.0 2.3 2 0 0 2 2 2 1 RNA helicase AAA_14 PF13173.1 gi|327311518|ref|YP_004338415.1| - 5.4e-05 23.0 0.0 0.00025 20.9 0.0 2.1 1 1 1 2 2 2 1 AAA domain NACHT PF05729.7 gi|327311518|ref|YP_004338415.1| - 6e-05 22.7 0.7 0.0053 16.4 0.0 3.2 2 1 0 3 3 3 1 NACHT domain Bac_DnaA PF00308.13 gi|327311518|ref|YP_004338415.1| - 9.4e-05 22.1 0.2 0.00094 18.8 0.1 2.4 2 1 0 2 2 1 1 Bacterial dnaA protein DUF815 PF05673.8 gi|327311518|ref|YP_004338415.1| - 0.00027 19.9 0.0 0.0011 17.9 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|327311518|ref|YP_004338415.1| - 0.00047 19.6 0.3 0.0045 16.4 0.0 2.3 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|327311518|ref|YP_004338415.1| - 0.00055 19.9 0.0 0.0014 18.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|327311518|ref|YP_004338415.1| - 0.0007 19.3 0.0 0.0018 18.0 0.0 1.7 1 0 0 1 1 1 1 NTPase AAA_33 PF13671.1 gi|327311518|ref|YP_004338415.1| - 0.00089 19.1 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|327311518|ref|YP_004338415.1| - 0.00092 19.5 0.1 0.0044 17.3 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_18 PF13238.1 gi|327311518|ref|YP_004338415.1| - 0.0012 19.1 0.1 0.006 16.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|327311518|ref|YP_004338415.1| - 0.0021 17.2 0.0 0.0037 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_2 PF07724.9 gi|327311518|ref|YP_004338415.1| - 0.0026 17.7 0.0 0.005 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) UPF0079 PF02367.12 gi|327311518|ref|YP_004338415.1| - 0.0053 16.3 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|327311518|ref|YP_004338415.1| - 0.0057 15.5 0.0 0.0098 14.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_11 PF13086.1 gi|327311518|ref|YP_004338415.1| - 0.0061 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|327311518|ref|YP_004338415.1| - 0.0062 16.0 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_3 PF07726.6 gi|327311518|ref|YP_004338415.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|327311518|ref|YP_004338415.1| - 0.013 14.9 0.0 0.034 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.1 gi|327311518|ref|YP_004338415.1| - 0.022 14.8 0.0 0.085 12.9 0.0 2.0 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|327311518|ref|YP_004338415.1| - 0.037 13.4 0.0 6.5 6.0 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|327311518|ref|YP_004338415.1| - 0.04 12.7 0.0 0.088 11.6 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.16 gi|327311518|ref|YP_004338415.1| - 0.043 12.9 0.0 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|327311518|ref|YP_004338415.1| - 0.05 13.1 0.0 0.094 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|327311518|ref|YP_004338415.1| - 0.067 12.6 0.0 1.4 8.3 0.0 2.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase RFC1 PF08519.7 gi|327311518|ref|YP_004338415.1| - 0.08 12.6 0.2 0.47 10.1 0.1 2.1 1 1 1 2 2 2 0 Replication factor RFC1 C terminal domain FtsK_SpoIIIE PF01580.13 gi|327311518|ref|YP_004338415.1| - 0.086 12.2 0.1 0.73 9.2 0.0 2.2 1 1 1 2 2 2 0 FtsK/SpoIIIE family ArgK PF03308.11 gi|327311518|ref|YP_004338415.1| - 0.1 11.3 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 ArgK protein MobB PF03205.9 gi|327311518|ref|YP_004338415.1| - 0.11 12.1 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B HTH_5 PF01022.15 gi|327311519|ref|YP_004338416.1| - 9.7e-10 37.9 0.8 1.5e-09 37.3 0.2 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|327311519|ref|YP_004338416.1| - 3.1e-08 33.2 0.6 4.7e-08 32.7 0.1 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|327311519|ref|YP_004338416.1| - 6.5e-08 31.8 1.1 1.5e-07 30.6 0.7 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|327311519|ref|YP_004338416.1| - 0.00012 22.1 0.3 0.00017 21.6 0.2 1.3 1 1 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.1 gi|327311519|ref|YP_004338416.1| - 0.00014 21.7 0.1 0.0002 21.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|327311519|ref|YP_004338416.1| - 0.00021 20.9 0.1 0.00034 20.2 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|327311519|ref|YP_004338416.1| - 0.00031 20.3 0.1 0.00055 19.5 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|327311519|ref|YP_004338416.1| - 0.00065 19.4 0.2 0.00098 18.8 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|327311519|ref|YP_004338416.1| - 0.0015 18.1 0.2 0.0018 17.9 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|327311519|ref|YP_004338416.1| - 0.0036 17.0 0.1 0.0053 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|327311519|ref|YP_004338416.1| - 0.0042 16.6 0.3 0.0048 16.5 0.2 1.2 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|327311519|ref|YP_004338416.1| - 0.0076 16.5 0.3 0.012 15.8 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|327311519|ref|YP_004338416.1| - 0.0094 15.5 0.3 0.02 14.4 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Tnp_1 PF01527.15 gi|327311519|ref|YP_004338416.1| - 0.013 15.4 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Transposase MazG-like PF12643.2 gi|327311519|ref|YP_004338416.1| - 0.015 15.1 0.1 0.027 14.3 0.0 1.4 1 1 0 1 1 1 0 MazG-like family TFIIE_alpha PF02002.12 gi|327311519|ref|YP_004338416.1| - 0.016 14.7 0.2 0.016 14.7 0.2 1.4 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_11 PF08279.7 gi|327311519|ref|YP_004338416.1| - 0.023 14.3 1.0 0.039 13.6 0.7 1.4 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.14 gi|327311519|ref|YP_004338416.1| - 0.027 14.4 0.0 0.045 13.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.1 gi|327311519|ref|YP_004338416.1| - 0.043 13.3 0.1 0.048 13.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_28 PF13518.1 gi|327311519|ref|YP_004338416.1| - 0.048 13.6 0.5 0.072 13.1 0.3 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|327311519|ref|YP_004338416.1| - 0.057 12.7 0.1 0.098 12.0 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_IclR PF09339.5 gi|327311519|ref|YP_004338416.1| - 0.07 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_26 PF13443.1 gi|327311519|ref|YP_004338416.1| - 0.077 13.2 0.1 0.17 12.1 0.0 1.6 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Neurochondrin PF05536.6 gi|327311519|ref|YP_004338416.1| - 0.086 11.1 0.1 0.091 11.0 0.0 1.0 1 0 0 1 1 1 0 Neurochondrin Cdc6_C PF09079.6 gi|327311520|ref|YP_004338417.1| - 1.2e-21 76.1 0.0 3.1e-21 74.8 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|327311520|ref|YP_004338417.1| - 2.1e-06 27.8 0.0 7.4e-06 26.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|327311520|ref|YP_004338417.1| - 0.0001 22.3 0.1 0.00026 21.0 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain PqqD PF05402.7 gi|327311520|ref|YP_004338417.1| - 0.001 19.0 0.0 0.029 14.3 0.0 2.8 2 1 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) PCP_red PF08369.5 gi|327311520|ref|YP_004338417.1| - 0.0016 18.2 0.2 0.84 9.5 0.0 2.8 1 1 1 2 2 2 2 Proto-chlorophyllide reductase 57 kD subunit ORC5_C PF14630.1 gi|327311520|ref|YP_004338417.1| - 0.047 13.1 0.1 1.6 8.1 0.0 2.1 1 1 0 2 2 2 0 Origin recognition complex (ORC) subunit 5 C-terminus Arch_ATPase PF01637.13 gi|327311520|ref|YP_004338417.1| - 0.064 12.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|327311520|ref|YP_004338417.1| - 0.078 13.1 0.0 0.35 11.0 0.0 2.2 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) NfeD PF01957.13 gi|327311522|ref|YP_004338419.1| - 3.9e-07 30.3 5.6 1e-06 28.9 3.9 1.7 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding Methyltransf_18 PF12847.2 gi|327311523|ref|YP_004338420.1| - 6.8e-07 29.8 0.0 5.2e-06 27.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|327311523|ref|YP_004338420.1| - 3.8e-06 26.9 0.0 5.2e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|327311523|ref|YP_004338420.1| - 0.00017 21.9 0.0 0.00034 21.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|327311523|ref|YP_004338420.1| - 0.00021 21.0 0.0 0.00024 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327311523|ref|YP_004338420.1| - 0.0054 16.3 0.1 0.01 15.4 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|327311523|ref|YP_004338420.1| - 0.033 13.2 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|327311523|ref|YP_004338420.1| - 0.043 13.1 0.3 0.18 11.1 0.1 1.9 1 1 1 2 2 2 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|327311523|ref|YP_004338420.1| - 0.12 12.6 0.0 0.26 11.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF3195 PF11424.3 gi|327311524|ref|YP_004338421.1| - 6.4e-22 77.5 0.0 7.6e-22 77.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3195) Chorismate_bind PF00425.13 gi|327311525|ref|YP_004338422.1| - 1.7e-90 302.8 0.0 2.1e-90 302.5 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|327311525|ref|YP_004338422.1| - 3.9e-09 36.6 0.0 1.5e-08 34.7 0.0 2.0 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|327311526|ref|YP_004338423.1| - 1e-50 171.8 0.0 1.1e-50 171.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|327311526|ref|YP_004338423.1| - 1.3e-10 41.1 0.1 4.9e-10 39.2 0.0 2.0 1 1 1 2 2 2 1 Peptidase C26 Acetyltransf_7 PF13508.1 gi|327311526|ref|YP_004338423.1| - 0.12 12.5 0.1 1.9 8.6 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain IGPS PF00218.16 gi|327311527|ref|YP_004338424.1| - 6.4e-49 166.3 0.0 7.6e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|327311527|ref|YP_004338424.1| - 0.00015 21.1 0.0 0.00052 19.3 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.9 gi|327311527|ref|YP_004338424.1| - 0.0026 16.7 0.1 0.0075 15.2 0.0 1.7 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|327311527|ref|YP_004338424.1| - 0.032 13.3 0.2 5.4 6.0 0.0 2.1 1 1 0 2 2 2 0 Nitronate monooxygenase FMN_dh PF01070.13 gi|327311527|ref|YP_004338424.1| - 0.087 11.6 0.1 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase ThiG PF05690.9 gi|327311527|ref|YP_004338424.1| - 0.11 11.5 0.1 0.22 10.5 0.0 1.5 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DUF2258 PF10015.4 gi|327311528|ref|YP_004338425.1| - 2.8e-29 100.7 1.7 4.4e-29 100.0 1.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) HR1 PF02185.11 gi|327311528|ref|YP_004338425.1| - 0.0061 16.2 0.2 0.019 14.6 0.0 1.9 2 0 0 2 2 2 1 Hr1 repeat Mnd1 PF03962.10 gi|327311528|ref|YP_004338425.1| - 0.041 13.5 0.0 0.077 12.6 0.0 1.5 1 0 0 1 1 1 0 Mnd1 family Pox_A_type_inc PF04508.7 gi|327311528|ref|YP_004338425.1| - 0.38 10.6 6.1 1.4 8.8 0.0 3.6 3 1 0 4 4 4 0 Viral A-type inclusion protein repeat DUF77 PF01910.12 gi|327311529|ref|YP_004338426.1| - 1.9e-26 91.5 0.1 2.2e-26 91.3 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Gsf2 PF11055.3 gi|327311529|ref|YP_004338426.1| - 0.05 12.1 0.0 0.056 11.9 0.0 1.0 1 0 0 1 1 1 0 Glucose signalling factor 2 CobS PF02654.10 gi|327311530|ref|YP_004338427.1| - 3.4e-34 118.4 3.9 4.2e-34 118.1 2.7 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase LHC PF00556.15 gi|327311530|ref|YP_004338427.1| - 0.43 10.4 2.8 0.44 10.4 0.0 2.5 3 0 0 3 3 3 0 Antenna complex alpha/beta subunit Aminotran_1_2 PF00155.16 gi|327311531|ref|YP_004338428.1| - 4.3e-20 71.9 0.0 6.8e-20 71.3 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Pyr_redox_2 PF07992.9 gi|327311532|ref|YP_004338429.1| - 4.9e-10 39.6 3.1 2.3e-09 37.4 2.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|327311532|ref|YP_004338429.1| - 6.8e-06 26.3 5.1 0.0047 17.2 1.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|327311532|ref|YP_004338429.1| - 0.021 13.7 0.6 0.031 13.1 0.4 1.5 1 1 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.1 gi|327311532|ref|YP_004338429.1| - 0.022 14.7 0.1 0.068 13.2 0.1 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|327311532|ref|YP_004338429.1| - 0.029 13.2 0.0 0.055 12.3 0.0 1.4 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|327311532|ref|YP_004338429.1| - 0.046 13.4 1.4 0.63 9.7 0.3 2.6 2 1 1 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|327311532|ref|YP_004338429.1| - 0.072 12.0 0.0 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein DAO PF01266.19 gi|327311532|ref|YP_004338429.1| - 0.085 11.7 3.2 0.2 10.5 0.2 2.3 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|327311532|ref|YP_004338429.1| - 0.11 12.7 0.1 0.27 11.5 0.1 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|327311532|ref|YP_004338429.1| - 0.34 10.9 3.6 6.1 6.8 1.5 2.8 2 1 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase CbiZ PF01955.13 gi|327311533|ref|YP_004338430.1| - 6.4e-36 123.9 0.0 7e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase DBI_PRT PF02277.12 gi|327311534|ref|YP_004338431.1| - 1.3e-30 106.6 1.4 2.2e-30 105.8 1.0 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase CobA_CobO_BtuR PF02572.10 gi|327311535|ref|YP_004338432.1| - 4.4e-30 104.5 0.0 3.2e-28 98.4 0.0 2.0 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YmdB PF13277.1 gi|327311535|ref|YP_004338432.1| - 0.02 13.9 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 YmdB-like protein PcrB PF01884.12 gi|327311535|ref|YP_004338432.1| - 0.04 13.1 0.0 0.046 12.9 0.0 1.1 1 0 0 1 1 1 0 PcrB family UBA_3 PF09288.5 gi|327311535|ref|YP_004338432.1| - 0.075 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Fungal ubiquitin-associated domain NTP_transf_3 PF12804.2 gi|327311536|ref|YP_004338433.1| - 1.1e-16 61.2 0.2 1.9e-16 60.5 0.2 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain ParBc PF02195.13 gi|327311536|ref|YP_004338433.1| - 0.0012 18.9 0.0 0.0021 18.1 0.0 1.4 1 0 0 1 1 1 1 ParB-like nuclease domain Xan_ur_permease PF00860.15 gi|327311537|ref|YP_004338434.1| - 8.2e-24 83.8 50.9 1.9e-22 79.3 33.5 2.4 1 1 0 1 1 1 1 Permease family UPF0114 PF03350.11 gi|327311537|ref|YP_004338434.1| - 0.036 13.9 0.7 0.12 12.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein family, UPF0114 EamA PF00892.15 gi|327311538|ref|YP_004338435.1| - 1.3e-21 76.9 34.3 1.5e-12 47.6 7.3 2.5 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|327311538|ref|YP_004338435.1| - 0.042 14.0 38.7 0.15 12.2 8.1 4.0 1 1 1 3 3 3 0 Multidrug resistance efflux transporter Sec61_beta PF03911.11 gi|327311538|ref|YP_004338435.1| - 2.2 8.1 6.8 0.25 11.1 0.6 2.7 2 0 0 2 2 2 0 Sec61beta family PEPcase_2 PF14010.1 gi|327311539|ref|YP_004338436.1| - 1.5e-118 396.2 0.0 2e-118 395.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.12 gi|327311539|ref|YP_004338436.1| - 5.9e-06 24.4 0.0 9.1e-06 23.8 0.0 1.4 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEP-utilizers_C PF02896.13 gi|327311539|ref|YP_004338436.1| - 0.017 13.9 0.0 0.027 13.3 0.0 1.3 1 0 0 1 1 1 0 PEP-utilising enzyme, TIM barrel domain MoCF_biosynth PF00994.19 gi|327311540|ref|YP_004338437.1| - 2.2e-36 124.4 0.0 3e-36 123.9 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain AhpC-TSA PF00578.16 gi|327311541|ref|YP_004338438.1| - 1.7e-29 101.9 0.0 2e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|327311541|ref|YP_004338438.1| - 2e-19 69.5 0.0 2.3e-19 69.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|327311541|ref|YP_004338438.1| - 0.0012 18.7 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme GSHPx PF00255.14 gi|327311541|ref|YP_004338438.1| - 0.0046 16.2 0.0 0.0061 15.9 0.0 1.3 1 0 0 1 1 1 1 Glutathione peroxidase Thioredoxin_8 PF13905.1 gi|327311541|ref|YP_004338438.1| - 0.021 14.9 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like DUF3801 PF12687.2 gi|327311541|ref|YP_004338438.1| - 0.12 11.8 0.0 1.2 8.6 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3801) AIRS_C PF02769.17 gi|327311542|ref|YP_004338439.1| - 2.7e-26 92.4 1.5 9.9e-26 90.5 0.6 1.9 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|327311542|ref|YP_004338439.1| - 2e-10 40.7 0.0 4.8e-10 39.5 0.0 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PadR PF03551.9 gi|327311543|ref|YP_004338440.1| - 1.2e-18 66.6 0.0 1.8e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_42 PF06224.7 gi|327311543|ref|YP_004338440.1| - 6.5e-06 25.7 0.0 7.5e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.7 gi|327311543|ref|YP_004338440.1| - 0.00018 19.8 0.0 0.00022 19.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_11 PF08279.7 gi|327311543|ref|YP_004338440.1| - 0.0009 18.8 0.4 0.02 14.5 0.0 2.5 3 0 0 3 3 3 1 HTH domain HTH_20 PF12840.2 gi|327311543|ref|YP_004338440.1| - 0.0016 18.2 0.0 0.043 13.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|327311543|ref|YP_004338440.1| - 0.0072 16.0 0.0 0.055 13.1 0.0 2.2 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|327311543|ref|YP_004338440.1| - 0.0094 16.2 0.0 0.038 14.3 0.0 2.0 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|327311543|ref|YP_004338440.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_45 PF14947.1 gi|327311543|ref|YP_004338440.1| - 0.041 13.6 0.2 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix AphA_like PF14557.1 gi|327311543|ref|YP_004338440.1| - 0.087 12.3 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator PaaX PF07848.7 gi|327311543|ref|YP_004338440.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein FUR PF01475.14 gi|327311543|ref|YP_004338440.1| - 0.13 12.2 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family NTPase_1 PF03266.10 gi|327311544|ref|YP_004338441.1| - 9.7e-45 152.2 0.0 1.1e-44 152.1 0.0 1.0 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|327311544|ref|YP_004338441.1| - 5.4e-07 30.4 0.0 6.9e-07 30.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain DUF2478 PF10649.4 gi|327311544|ref|YP_004338441.1| - 1.3e-06 27.8 0.3 4.7e-06 26.0 0.2 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_19 PF13245.1 gi|327311544|ref|YP_004338441.1| - 1.8e-05 24.3 1.8 2.6e-05 23.8 0.3 1.9 2 0 0 2 2 2 1 Part of AAA domain MobB PF03205.9 gi|327311544|ref|YP_004338441.1| - 2.7e-05 23.9 0.1 0.00014 21.5 0.1 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|327311544|ref|YP_004338441.1| - 5.9e-05 23.3 0.1 9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|327311544|ref|YP_004338441.1| - 7.5e-05 22.7 0.2 0.00046 20.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|327311544|ref|YP_004338441.1| - 0.00014 21.9 0.5 0.00072 19.6 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|327311544|ref|YP_004338441.1| - 0.00027 20.5 1.8 0.0021 17.6 1.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327311544|ref|YP_004338441.1| - 0.00036 20.5 0.3 0.0012 18.8 0.1 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|327311544|ref|YP_004338441.1| - 0.00037 20.6 0.3 0.00056 20.1 0.2 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|327311544|ref|YP_004338441.1| - 0.00056 19.4 0.1 0.00092 18.7 0.1 1.3 1 0 0 1 1 1 1 AAA-like domain IstB_IS21 PF01695.12 gi|327311544|ref|YP_004338441.1| - 0.001 18.5 3.2 0.01 15.2 0.2 2.6 2 1 1 3 3 3 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|327311544|ref|YP_004338441.1| - 0.0012 18.7 0.3 0.0024 17.7 0.1 1.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|327311544|ref|YP_004338441.1| - 0.0017 18.0 0.3 0.0039 16.8 0.1 1.6 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.1 gi|327311544|ref|YP_004338441.1| - 0.0025 17.4 0.1 0.014 15.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|327311544|ref|YP_004338441.1| - 0.0041 15.9 1.1 0.006 15.4 0.7 1.3 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|327311544|ref|YP_004338441.1| - 0.0044 16.4 0.1 0.01 15.2 0.1 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain KaiC PF06745.8 gi|327311544|ref|YP_004338441.1| - 0.0062 15.6 0.0 0.0079 15.3 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_5 PF07728.9 gi|327311544|ref|YP_004338441.1| - 0.0074 16.0 0.3 0.019 14.6 0.1 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|327311544|ref|YP_004338441.1| - 0.009 15.4 0.2 0.009 15.4 0.2 1.8 2 1 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|327311544|ref|YP_004338441.1| - 0.024 14.1 0.2 0.039 13.4 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.5 gi|327311544|ref|YP_004338441.1| - 0.027 13.6 0.1 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|327311544|ref|YP_004338441.1| - 0.043 13.4 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase RuvB_N PF05496.7 gi|327311544|ref|YP_004338441.1| - 0.047 12.7 0.1 0.12 11.4 0.1 1.6 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|327311544|ref|YP_004338441.1| - 0.054 13.4 0.0 0.25 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|327311544|ref|YP_004338441.1| - 0.084 11.9 0.2 0.12 11.4 0.2 1.2 1 0 0 1 1 1 0 Zeta toxin Viral_helicase1 PF01443.13 gi|327311544|ref|YP_004338441.1| - 0.088 12.3 0.1 0.54 9.7 0.1 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.18 gi|327311544|ref|YP_004338441.1| - 0.09 12.7 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|327311544|ref|YP_004338441.1| - 0.097 11.5 0.4 0.33 9.8 0.1 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|327311544|ref|YP_004338441.1| - 0.098 11.8 0.1 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PRK PF00485.13 gi|327311544|ref|YP_004338441.1| - 0.11 12.0 0.1 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF2075 PF09848.4 gi|327311544|ref|YP_004338441.1| - 0.13 11.1 0.4 0.2 10.5 0.3 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SRP54 PF00448.17 gi|327311544|ref|YP_004338441.1| - 0.14 11.5 0.1 0.4 10.1 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RecA PF00154.16 gi|327311544|ref|YP_004338441.1| - 0.15 11.0 0.1 0.24 10.4 0.1 1.5 1 1 0 1 1 1 0 recA bacterial DNA recombination protein Zot PF05707.7 gi|327311544|ref|YP_004338441.1| - 0.16 11.4 0.1 0.27 10.7 0.1 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_29 PF13555.1 gi|327311544|ref|YP_004338441.1| - 0.17 11.4 0.1 0.28 10.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DAP3 PF10236.4 gi|327311544|ref|YP_004338441.1| - 0.17 10.7 0.0 0.25 10.2 0.0 1.3 1 1 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PhoH PF02562.11 gi|327311544|ref|YP_004338441.1| - 0.17 11.0 0.2 0.28 10.3 0.2 1.3 1 0 0 1 1 1 0 PhoH-like protein DUF1641 PF07849.6 gi|327311545|ref|YP_004338442.1| - 4.3e-15 55.0 0.3 1.1e-14 53.7 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HisKA PF00512.20 gi|327311545|ref|YP_004338442.1| - 0.011 15.7 0.2 0.03 14.2 0.2 1.7 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF892 PF05974.7 gi|327311545|ref|YP_004338442.1| - 0.015 15.0 0.1 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF892) FlgN PF05130.7 gi|327311545|ref|YP_004338442.1| - 0.13 12.5 2.6 0.15 12.3 1.8 1.3 1 1 0 1 1 1 0 FlgN protein Pyr_redox_2 PF07992.9 gi|327311546|ref|YP_004338443.1| - 1e-07 32.0 0.0 2e-07 31.0 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|327311546|ref|YP_004338443.1| - 0.0073 16.6 0.1 4.4 7.7 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|327311546|ref|YP_004338443.1| - 0.03 14.1 0.1 0.87 9.3 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding DAO PF01266.19 gi|327311546|ref|YP_004338443.1| - 0.067 12.0 0.9 4.7 6.0 0.5 2.3 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|327311546|ref|YP_004338443.1| - 0.074 13.0 0.2 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|327311546|ref|YP_004338443.1| - 0.11 11.1 0.1 0.17 10.4 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Ribosomal_L18p PF00861.17 gi|327311547|ref|YP_004338444.1| - 2.2e-31 108.5 0.1 3e-31 108.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|327311547|ref|YP_004338444.1| - 3e-15 56.5 0.4 4.6e-15 55.9 0.2 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|327311548|ref|YP_004338445.1| - 4.3e-46 156.3 4.9 4.9e-46 156.1 3.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e IDEAL PF08858.5 gi|327311548|ref|YP_004338445.1| - 0.0099 15.3 0.0 0.026 14.0 0.0 1.8 1 0 0 1 1 1 1 IDEAL domain Elongin_A PF06881.6 gi|327311548|ref|YP_004338445.1| - 0.074 13.4 0.5 0.14 12.5 0.3 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription factor SIII (Elongin) subunit A HTH_24 PF13412.1 gi|327311548|ref|YP_004338445.1| - 0.66 9.4 2.5 3.3 7.1 0.1 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_17 PF12728.2 gi|327311548|ref|YP_004338445.1| - 1.6 9.0 4.8 15 5.9 0.0 3.7 3 3 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|327311549|ref|YP_004338446.1| - 9.6e-38 128.6 0.1 1.4e-37 128.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Pribosyltran PF00156.22 gi|327311550|ref|YP_004338447.1| - 3.3e-21 75.3 0.8 4.4e-21 74.8 0.6 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|327311550|ref|YP_004338447.1| - 0.001 18.3 0.1 0.0012 18.0 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Resolvase PF00239.16 gi|327311551|ref|YP_004338448.1| - 1.8e-34 118.5 0.1 2.4e-34 118.2 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain Sigma70_r4 PF04545.11 gi|327311551|ref|YP_004338448.1| - 0.0024 17.1 0.9 0.092 12.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 Complex1_LYR PF05347.10 gi|327311551|ref|YP_004338448.1| - 0.0059 16.3 0.7 0.015 15.0 0.1 2.0 2 0 0 2 2 2 1 Complex 1 protein (LYR family) zinc-ribbons_6 PF07191.7 gi|327311551|ref|YP_004338448.1| - 0.018 14.8 0.2 0.04 13.7 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.1 gi|327311551|ref|YP_004338448.1| - 0.049 12.8 2.2 0.12 11.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|327311551|ref|YP_004338448.1| - 0.053 13.3 0.2 0.091 12.5 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|327311551|ref|YP_004338448.1| - 0.07 12.3 0.6 0.15 11.2 0.4 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger Lar_restr_allev PF14354.1 gi|327311551|ref|YP_004338448.1| - 0.082 13.2 0.3 0.17 12.1 0.2 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DpnD-PcfM PF14207.1 gi|327311551|ref|YP_004338448.1| - 0.085 12.6 0.6 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 DpnD/PcfM-like protein DUF3420 PF11900.3 gi|327311551|ref|YP_004338448.1| - 0.094 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3420) Bestrophin PF01062.16 gi|327311551|ref|YP_004338448.1| - 0.1 11.5 0.1 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel FaeA PF04703.7 gi|327311551|ref|YP_004338448.1| - 0.13 12.4 0.1 0.43 10.7 0.0 1.9 2 0 0 2 2 1 0 FaeA-like protein DUF35_N PF12172.3 gi|327311551|ref|YP_004338448.1| - 0.13 12.2 1.6 12 5.9 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) AvrPphF-ORF-2 PF09143.5 gi|327311551|ref|YP_004338448.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 AvrPphF-ORF-2 zinc_ribbon_2 PF13240.1 gi|327311551|ref|YP_004338448.1| - 0.41 10.1 0.1 0.41 10.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|327311551|ref|YP_004338448.1| - 1.2 8.8 3.7 4.8 6.9 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|327311551|ref|YP_004338448.1| - 4.9 7.3 8.8 4.4 7.4 1.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF429 PF04250.8 gi|327311552|ref|YP_004338449.1| - 5.1e-27 94.4 0.3 7.5e-26 90.6 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF429) Ribosomal_S8 PF00410.14 gi|327311553|ref|YP_004338450.1| - 9e-23 80.5 0.0 1.2e-22 80.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|327311554|ref|YP_004338451.1| - 2.4e-16 58.8 7.1 2.6e-16 58.7 4.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|327311554|ref|YP_004338451.1| - 0.0038 16.8 5.0 0.0052 16.3 2.8 1.7 1 1 1 2 2 2 1 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|327311554|ref|YP_004338451.1| - 0.024 14.4 0.2 0.036 13.8 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-CCHC_3 PF13917.1 gi|327311554|ref|YP_004338451.1| - 0.028 14.1 2.8 0.18 11.5 0.2 2.3 2 0 0 2 2 2 0 Zinc knuckle DUF1451 PF07295.6 gi|327311554|ref|YP_004338451.1| - 0.042 13.6 0.2 0.048 13.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) Zn_Tnp_IS91 PF14319.1 gi|327311554|ref|YP_004338451.1| - 0.048 13.1 0.3 0.048 13.1 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-HYPF PF07503.7 gi|327311554|ref|YP_004338451.1| - 0.091 12.1 7.3 1.7 8.1 1.2 2.1 2 0 0 2 2 2 0 HypF finger DUF4182 PF13790.1 gi|327311554|ref|YP_004338451.1| - 0.17 11.7 0.7 11 5.9 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) DNA_RNApol_7kD PF03604.8 gi|327311554|ref|YP_004338451.1| - 0.41 10.1 5.6 0.25 10.8 1.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Mu-like_Com PF10122.4 gi|327311554|ref|YP_004338451.1| - 0.79 8.8 3.9 0.33 10.0 0.3 1.9 2 0 0 2 2 2 0 Mu-like prophage protein Com DUF1660 PF07874.6 gi|327311554|ref|YP_004338451.1| - 6.7 7.0 5.5 1.3e+02 2.9 3.8 2.0 1 1 0 1 1 1 0 Prophage protein (DUF1660) CTP_synth_N PF06418.9 gi|327311555|ref|YP_004338452.1| - 6.2e-123 409.2 0.0 7.8e-123 408.9 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|327311555|ref|YP_004338452.1| - 3.4e-47 160.3 0.0 6.3e-47 159.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|327311555|ref|YP_004338452.1| - 1.1e-09 38.1 0.0 2.1e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|327311555|ref|YP_004338452.1| - 4.5e-07 29.4 0.0 7.9e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.6 gi|327311555|ref|YP_004338452.1| - 0.062 11.9 0.0 0.099 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1611) Oxidored_q4 PF00507.14 gi|327311556|ref|YP_004338453.1| - 5.3e-07 29.3 0.6 1.1e-06 28.4 0.3 1.5 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABC2_membrane_4 PF12730.2 gi|327311556|ref|YP_004338453.1| - 0.0012 18.0 2.3 0.0015 17.7 1.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein SK_channel PF03530.9 gi|327311556|ref|YP_004338453.1| - 0.047 13.5 0.0 0.047 13.5 0.0 1.5 2 0 0 2 2 2 0 Calcium-activated SK potassium channel OppC_N PF12911.2 gi|327311556|ref|YP_004338453.1| - 0.08 12.3 0.1 0.08 12.3 0.1 2.6 2 1 1 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF1469 PF07332.6 gi|327311556|ref|YP_004338453.1| - 0.083 12.6 9.0 0.79 9.4 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF3317 PF11779.3 gi|327311556|ref|YP_004338453.1| - 0.53 9.7 3.0 4.3 6.8 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3317) GPI2 PF06432.6 gi|327311556|ref|YP_004338453.1| - 0.75 9.0 4.7 0.21 10.8 0.8 1.7 2 0 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF3149 PF11346.3 gi|327311556|ref|YP_004338453.1| - 2.7 7.6 5.8 1.2 8.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) DUF485 PF04341.7 gi|327311556|ref|YP_004338453.1| - 4.6 7.0 11.9 1.9 8.2 3.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF485 Bax1-I PF01027.15 gi|327311556|ref|YP_004338453.1| - 4.6 6.7 11.2 26 4.3 7.8 1.9 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF805 PF05656.9 gi|327311556|ref|YP_004338453.1| - 5.1 6.9 6.7 79 3.0 4.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF805) eIF-6 PF01912.13 gi|327311557|ref|YP_004338454.1| - 2e-63 213.0 3.2 2.4e-63 212.8 2.2 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18ae PF01775.12 gi|327311558|ref|YP_004338455.1| - 6.8e-08 32.4 0.2 1.1e-07 31.7 0.1 1.4 2 0 0 2 2 2 1 Ribosomal L18ae/LX protein domain Prefoldin PF02996.12 gi|327311559|ref|YP_004338456.1| - 9.5e-21 73.6 0.5 1.2e-20 73.3 0.3 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|327311559|ref|YP_004338456.1| - 1.1e-06 28.2 2.3 0.0053 16.4 0.0 2.1 1 1 1 2 2 2 2 Prefoldin subunit TACC PF05010.9 gi|327311559|ref|YP_004338456.1| - 0.0093 15.7 0.1 0.46 10.2 0.0 2.0 2 0 0 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC) DASH_Dad3 PF08656.5 gi|327311559|ref|YP_004338456.1| - 0.011 15.3 3.8 0.09 12.4 0.0 2.6 2 1 1 3 3 3 0 DASH complex subunit Dad3 Bacillus_HBL PF05791.6 gi|327311559|ref|YP_004338456.1| - 0.014 14.7 1.6 0.21 10.9 0.1 2.0 1 1 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Sec8_exocyst PF04048.9 gi|327311559|ref|YP_004338456.1| - 0.016 14.8 1.0 1.1 8.8 0.1 2.2 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain Spc7 PF08317.6 gi|327311559|ref|YP_004338456.1| - 0.018 13.7 2.1 1.1 7.9 0.2 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Tektin PF03148.9 gi|327311559|ref|YP_004338456.1| - 0.022 13.3 2.6 0.22 10.0 0.2 2.0 2 0 0 2 2 2 0 Tektin family IncA PF04156.9 gi|327311559|ref|YP_004338456.1| - 0.027 14.0 1.3 2.8 7.5 0.0 2.0 2 0 0 2 2 2 0 IncA protein DUF4446 PF14584.1 gi|327311559|ref|YP_004338456.1| - 0.041 13.7 0.1 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF869 PF05911.6 gi|327311559|ref|YP_004338456.1| - 0.041 12.1 0.1 0.05 11.8 0.1 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) MCPsignal PF00015.16 gi|327311559|ref|YP_004338456.1| - 0.056 12.9 1.1 0.22 11.0 0.8 1.8 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Sec5 PF15469.1 gi|327311559|ref|YP_004338456.1| - 0.061 13.0 1.6 0.62 9.7 1.1 2.0 1 1 0 1 1 1 0 Exocyst complex component Sec5 IFT57 PF10498.4 gi|327311559|ref|YP_004338456.1| - 0.064 11.9 1.8 2.1 6.9 0.1 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 TPR_MLP1_2 PF07926.7 gi|327311559|ref|YP_004338456.1| - 0.086 12.5 3.7 1.2 8.8 2.6 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein YtxC PF08812.6 gi|327311559|ref|YP_004338456.1| - 0.11 12.0 0.3 0.62 9.5 0.0 1.9 2 0 0 2 2 2 0 YtxC-like family Laminin_II PF06009.7 gi|327311559|ref|YP_004338456.1| - 0.14 11.9 3.1 5.8 6.6 0.5 2.1 2 0 0 2 2 2 0 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|327311559|ref|YP_004338456.1| - 0.17 11.8 2.1 3.4 7.7 0.1 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|327311559|ref|YP_004338456.1| - 0.18 12.0 1.7 4 7.7 0.1 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.6 gi|327311559|ref|YP_004338456.1| - 0.2 11.5 2.4 3.3 7.6 0.1 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Adeno_PIX PF03955.9 gi|327311559|ref|YP_004338456.1| - 0.23 11.9 0.9 15 6.1 0.1 2.1 2 0 0 2 2 2 0 Adenovirus hexon-associated protein (IX) DUF4164 PF13747.1 gi|327311559|ref|YP_004338456.1| - 0.25 11.5 4.6 0.4 10.8 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) SRP54 PF00448.17 gi|327311560|ref|YP_004338457.1| - 3e-67 225.8 0.0 3.9e-67 225.5 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|327311560|ref|YP_004338457.1| - 2.3e-11 43.6 0.4 4.4e-11 42.7 0.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_19 PF13245.1 gi|327311560|ref|YP_004338457.1| - 1e-05 25.1 0.4 4.3e-05 23.1 0.1 2.1 1 1 1 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|327311560|ref|YP_004338457.1| - 0.00015 21.8 0.0 0.00073 19.6 0.0 2.0 2 1 1 3 3 3 1 AAA domain cobW PF02492.14 gi|327311560|ref|YP_004338457.1| - 0.00025 20.5 0.0 0.00056 19.4 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|327311560|ref|YP_004338457.1| - 0.00034 20.5 0.0 0.0006 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|327311560|ref|YP_004338457.1| - 0.0004 20.0 0.9 0.00056 19.5 0.1 1.6 2 0 0 2 2 1 1 AAA domain MobB PF03205.9 gi|327311560|ref|YP_004338457.1| - 0.0053 16.4 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|327311560|ref|YP_004338457.1| - 0.011 15.4 0.0 1.5 8.4 0.0 2.6 1 1 1 3 3 3 0 NTPase NACHT PF05729.7 gi|327311560|ref|YP_004338457.1| - 0.013 15.2 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Thioredoxin_7 PF13899.1 gi|327311560|ref|YP_004338457.1| - 0.013 15.4 0.0 2.1 8.4 0.0 2.5 2 0 0 2 2 2 0 Thioredoxin-like AAA PF00004.24 gi|327311560|ref|YP_004338457.1| - 0.015 15.4 0.0 0.078 13.1 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|327311560|ref|YP_004338457.1| - 0.019 14.4 0.3 0.12 11.7 0.2 2.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|327311560|ref|YP_004338457.1| - 0.025 14.5 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|327311560|ref|YP_004338457.1| - 0.031 13.3 0.0 0.06 12.4 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|327311560|ref|YP_004338457.1| - 0.04 13.3 0.0 0.092 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA-like domain Peripla_BP_4 PF13407.1 gi|327311560|ref|YP_004338457.1| - 0.043 13.1 0.1 0.29 10.4 0.0 2.2 1 1 1 2 2 2 0 Periplasmic binding protein domain ABC_tran PF00005.22 gi|327311560|ref|YP_004338457.1| - 0.047 13.9 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_23 PF13476.1 gi|327311560|ref|YP_004338457.1| - 0.053 13.8 0.0 0.096 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|327311560|ref|YP_004338457.1| - 0.058 12.9 0.0 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|327311560|ref|YP_004338457.1| - 0.062 12.1 0.0 0.087 11.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF3671 PF12420.3 gi|327311561|ref|YP_004338458.1| - 0.16 11.9 3.2 0.17 11.8 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function BacteriocIIc_cy PF12173.3 gi|327311561|ref|YP_004338458.1| - 0.27 11.3 2.9 0.36 10.8 2.0 1.1 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like Spt5-NGN PF03439.8 gi|327311562|ref|YP_004338459.1| - 3.5e-17 61.9 0.5 6.3e-17 61.1 0.3 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|327311562|ref|YP_004338459.1| - 0.0015 18.1 0.7 0.006 16.2 0.5 2.1 1 0 0 1 1 1 1 KOW motif Ribosomal_L11 PF00298.14 gi|327311563|ref|YP_004338460.1| - 3.8e-17 62.1 0.3 6.5e-17 61.4 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|327311563|ref|YP_004338460.1| - 0.032 13.6 0.2 0.077 12.4 0.1 1.7 1 1 1 2 2 2 0 Ribosomal protein L11, N-terminal domain Cpl-7 PF08230.6 gi|327311563|ref|YP_004338460.1| - 0.034 13.8 0.3 0.14 11.9 0.0 2.1 2 1 0 2 2 2 0 Cpl-7 lysozyme C-terminal domain Asp23 PF03780.8 gi|327311563|ref|YP_004338460.1| - 0.12 12.6 0.2 5.3 7.3 0.0 2.2 2 0 0 2 2 2 0 Asp23 family Ribosomal_L1 PF00687.16 gi|327311564|ref|YP_004338461.1| - 3.6e-40 137.6 0.0 4.2e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|327311565|ref|YP_004338462.1| - 3e-19 68.7 0.0 5.1e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 7TMR-HDED PF07697.6 gi|327311565|ref|YP_004338462.1| - 0.0053 16.5 1.5 0.094 12.4 0.1 2.5 2 0 0 2 2 2 1 7TM-HD extracellular Cloacin PF03515.9 gi|327311565|ref|YP_004338462.1| - 0.051 12.7 0.1 0.078 12.1 0.1 1.2 1 0 0 1 1 1 0 Colicin-like bacteriocin tRNase domain GHMP_kinases_N PF00288.21 gi|327311566|ref|YP_004338463.1| - 8.8e-12 44.9 2.0 2.1e-11 43.7 1.4 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|327311566|ref|YP_004338463.1| - 2.7e-07 30.6 0.2 4.1e-06 26.8 0.1 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|327311566|ref|YP_004338463.1| - 0.026 13.8 0.0 0.055 12.7 0.0 1.6 1 0 0 1 1 1 0 Galactokinase galactose-binding signature MtN3_slv PF03083.11 gi|327311567|ref|YP_004338464.1| - 0.082 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange DUF3318 PF11780.3 gi|327311567|ref|YP_004338464.1| - 0.18 11.3 1.3 0.38 10.3 0.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3318) Transport_MerF PF11431.3 gi|327311567|ref|YP_004338464.1| - 1.2 8.8 4.1 3.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Membrane transport protein MerF PNP_UDP_1 PF01048.15 gi|327311568|ref|YP_004338465.1| - 4.4e-42 143.6 0.9 5.4e-42 143.3 0.6 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF2122 PF09895.4 gi|327311570|ref|YP_004338467.1| - 1.3e-24 86.4 0.0 1.6e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) HSP20 PF00011.16 gi|327311571|ref|YP_004338468.1| - 4.6e-12 45.6 0.1 2.1e-10 40.3 0.0 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family BPD_transp_1 PF00528.17 gi|327311572|ref|YP_004338469.1| - 1.3e-29 102.9 8.0 2.6e-29 102.0 5.5 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component GTP_EFTU PF00009.22 gi|327311573|ref|YP_004338470.1| - 1.5e-32 112.6 0.0 3e-32 111.5 0.0 1.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|327311573|ref|YP_004338470.1| - 2.4e-16 59.5 0.4 5e-16 58.5 0.3 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|327311573|ref|YP_004338470.1| - 6.1e-06 26.2 0.2 1.5e-05 25.0 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|327311573|ref|YP_004338470.1| - 0.0033 17.3 0.0 0.014 15.2 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|327311573|ref|YP_004338470.1| - 0.0099 15.1 0.1 0.26 10.5 0.0 2.1 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit BPD_transp_2 PF02653.11 gi|327311574|ref|YP_004338471.1| - 8.6e-37 126.5 37.0 1.1e-36 126.1 25.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_OmpA PF13436.1 gi|327311574|ref|YP_004338471.1| - 0.58 9.8 12.3 0.084 12.5 5.1 2.1 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain BPD_transp_2 PF02653.11 gi|327311575|ref|YP_004338472.1| - 2e-43 148.3 34.3 2e-43 148.3 23.8 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF4381 PF14316.1 gi|327311575|ref|YP_004338472.1| - 0.3 11.1 2.7 0.41 10.7 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) ABC_tran PF00005.22 gi|327311576|ref|YP_004338473.1| - 4.3e-38 130.6 0.0 2.2e-28 99.2 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|327311576|ref|YP_004338473.1| - 4.7e-12 46.4 0.1 2.1e-05 24.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|327311576|ref|YP_004338473.1| - 0.0054 16.3 0.2 0.012 15.2 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|327311576|ref|YP_004338473.1| - 0.01 15.3 0.1 0.076 12.5 0.0 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|327311576|ref|YP_004338473.1| - 0.056 12.8 0.2 6.9 6.0 0.1 2.9 3 0 0 3 3 3 0 AAA-like domain AAA_23 PF13476.1 gi|327311576|ref|YP_004338473.1| - 0.064 13.5 0.1 0.098 12.9 0.1 1.1 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|327311576|ref|YP_004338473.1| - 0.073 12.1 0.0 0.82 8.6 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain DUF3584 PF12128.3 gi|327311576|ref|YP_004338473.1| - 0.084 10.1 0.1 0.11 9.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DLIC PF05783.6 gi|327311576|ref|YP_004338473.1| - 0.11 11.1 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_22 PF13401.1 gi|327311576|ref|YP_004338473.1| - 0.15 12.2 0.2 4.2 7.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|327311576|ref|YP_004338473.1| - 0.2 10.8 0.4 1.3 8.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|327311576|ref|YP_004338473.1| - 0.21 11.1 0.7 1.1 8.7 0.0 2.4 3 0 0 3 3 3 0 AAA domain Bmp PF02608.9 gi|327311577|ref|YP_004338474.1| - 8.6e-70 234.8 0.8 1.2e-69 234.4 0.5 1.2 1 0 0 1 1 1 1 Basic membrane protein DUF4088 PF13317.1 gi|327311577|ref|YP_004338474.1| - 0.11 11.8 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) DUF929 PF06053.6 gi|327311577|ref|YP_004338474.1| - 0.12 11.4 3.4 1.2 8.1 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF929) DUF3673 PF12425.3 gi|327311578|ref|YP_004338475.1| - 5.5 6.9 6.2 0.58 10.0 0.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3673) AAA_25 PF13481.1 gi|327311579|ref|YP_004338476.1| - 0.0014 18.1 0.0 0.0035 16.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|327311579|ref|YP_004338476.1| - 0.0015 18.2 0.0 0.0056 16.4 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|327311579|ref|YP_004338476.1| - 0.0016 18.6 0.0 0.012 15.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|327311579|ref|YP_004338476.1| - 0.024 13.7 0.0 0.06 12.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|327311579|ref|YP_004338476.1| - 0.036 14.9 0.0 0.15 12.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|327311579|ref|YP_004338476.1| - 0.061 13.3 0.0 0.19 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA ATPase domain RNA12 PF10443.4 gi|327311579|ref|YP_004338476.1| - 0.063 11.7 0.0 0.099 11.1 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein AAA PF00004.24 gi|327311579|ref|YP_004338476.1| - 0.089 12.9 0.0 0.2 11.8 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|327311579|ref|YP_004338476.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|327311579|ref|YP_004338476.1| - 0.11 11.9 0.0 14 4.9 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain Mis14 PF08641.7 gi|327311580|ref|YP_004338477.1| - 0.011 15.8 0.1 0.013 15.5 0.0 1.2 1 0 0 1 1 1 0 Kinetochore protein Mis14 like DUF3883 PF13020.1 gi|327311582|ref|YP_004338479.1| - 9.5e-14 50.9 0.1 2e-13 49.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) Hjc PF01870.13 gi|327311582|ref|YP_004338479.1| - 0.014 14.9 0.1 0.079 12.5 0.0 2.3 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) Mrr_cat PF04471.7 gi|327311582|ref|YP_004338479.1| - 0.11 12.3 0.0 0.31 10.8 0.0 1.8 1 0 0 1 1 1 0 Restriction endonuclease AAA_22 PF13401.1 gi|327311583|ref|YP_004338480.1| - 3.8e-07 30.3 0.0 0.02 15.0 0.0 3.6 3 0 0 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|327311583|ref|YP_004338480.1| - 5.4e-06 25.9 0.6 0.0045 16.4 0.0 4.0 4 0 0 4 4 4 1 AAA domain AAA_14 PF13173.1 gi|327311583|ref|YP_004338480.1| - 7e-06 25.9 0.0 0.02 14.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|327311583|ref|YP_004338480.1| - 1e-05 26.2 0.4 0.016 16.0 0.0 3.9 4 0 0 4 4 3 1 AAA domain AAA_33 PF13671.1 gi|327311583|ref|YP_004338480.1| - 1.6e-05 24.7 0.2 0.44 10.4 0.0 4.0 3 0 0 3 3 3 2 AAA domain AAA_10 PF12846.2 gi|327311583|ref|YP_004338480.1| - 1.7e-05 24.4 0.1 0.05 13.0 0.0 3.4 4 0 0 4 4 4 2 AAA-like domain TPR_12 PF13424.1 gi|327311583|ref|YP_004338480.1| - 9.3e-05 22.2 1.4 9.3e-05 22.2 1.0 3.1 2 0 0 2 2 2 1 Tetratricopeptide repeat AAA_16 PF13191.1 gi|327311583|ref|YP_004338480.1| - 0.0001 22.3 6.3 0.00052 20.0 0.0 4.3 4 1 0 4 4 4 1 AAA ATPase domain ABC_tran PF00005.22 gi|327311583|ref|YP_004338480.1| - 0.0005 20.3 0.0 0.0016 18.7 0.0 1.8 1 0 0 1 1 1 1 ABC transporter Arch_ATPase PF01637.13 gi|327311583|ref|YP_004338480.1| - 0.00057 19.6 0.9 0.33 10.6 0.0 3.0 3 0 0 3 3 2 1 Archaeal ATPase AAA PF00004.24 gi|327311583|ref|YP_004338480.1| - 0.00076 19.6 0.0 0.083 13.0 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|327311583|ref|YP_004338480.1| - 0.00089 18.2 0.0 0.0017 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|327311583|ref|YP_004338480.1| - 0.0016 17.3 0.0 0.028 13.2 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain MobB PF03205.9 gi|327311583|ref|YP_004338480.1| - 0.0021 17.7 0.1 0.027 14.1 0.1 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|327311583|ref|YP_004338480.1| - 0.006 16.3 0.5 5.8 6.7 0.6 3.6 2 0 0 2 2 2 0 Part of AAA domain IstB_IS21 PF01695.12 gi|327311583|ref|YP_004338480.1| - 0.007 15.8 0.0 0.17 11.2 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_29 PF13555.1 gi|327311583|ref|YP_004338480.1| - 0.016 14.7 0.0 0.038 13.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain TPR_8 PF13181.1 gi|327311583|ref|YP_004338480.1| - 0.016 14.9 1.2 0.15 11.9 0.8 2.8 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF258 PF03193.11 gi|327311583|ref|YP_004338480.1| - 0.026 13.7 0.0 0.059 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|327311583|ref|YP_004338480.1| - 0.039 14.2 0.3 1.2 9.4 0.0 3.5 4 0 0 4 4 3 0 AAA domain MMR_HSR1 PF01926.18 gi|327311583|ref|YP_004338480.1| - 0.047 13.6 0.0 0.37 10.7 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|327311583|ref|YP_004338480.1| - 0.049 13.8 0.0 2.6 8.2 0.0 2.4 2 0 0 2 2 2 0 RNA helicase TPR_2 PF07719.12 gi|327311583|ref|YP_004338480.1| - 0.061 13.2 10.1 0.022 14.6 2.3 3.8 3 0 0 3 3 2 0 Tetratricopeptide repeat BLOC1_2 PF10046.4 gi|327311583|ref|YP_004338480.1| - 0.14 12.3 2.2 0.2 11.8 0.1 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Miro PF08477.8 gi|327311583|ref|YP_004338480.1| - 0.15 12.5 0.0 25 5.3 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein TPR_7 PF13176.1 gi|327311583|ref|YP_004338480.1| - 0.22 11.4 3.3 4.9 7.1 0.5 4.1 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_23 PF13476.1 gi|327311583|ref|YP_004338480.1| - 0.48 10.7 3.8 1.4 9.1 0.0 3.0 3 0 0 3 3 3 0 AAA domain TPR_1 PF00515.23 gi|327311583|ref|YP_004338480.1| - 0.98 9.1 6.3 0.29 10.8 1.6 2.4 2 0 0 2 2 1 0 Tetratricopeptide repeat AA_kinase PF00696.23 gi|327311584|ref|YP_004338481.1| - 0.00044 19.8 0.0 0.00044 19.8 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family PSP1 PF04468.7 gi|327311585|ref|YP_004338482.1| - 0.058 13.3 0.4 0.11 12.4 0.3 1.6 1 0 0 1 1 1 0 PSP1 C-terminal conserved region DUF1156 PF06634.7 gi|327311587|ref|YP_004338484.1| - 2.8e-17 62.2 0.1 8.1e-17 60.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|327311587|ref|YP_004338484.1| - 1.8e-08 34.4 4.5 0.0048 16.9 0.0 3.6 4 1 0 4 4 4 2 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|327311587|ref|YP_004338484.1| - 3.7e-07 29.7 0.0 0.011 15.1 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|327311587|ref|YP_004338484.1| - 8.5e-07 28.7 1.0 0.0016 18.0 0.0 3.3 3 1 1 4 4 4 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|327311587|ref|YP_004338484.1| - 0.0084 15.6 0.0 1.7 8.0 0.0 2.4 2 0 0 2 2 2 2 DNA methylase Met_10 PF02475.11 gi|327311587|ref|YP_004338484.1| - 0.12 11.9 0.0 0.32 10.5 0.0 1.7 1 0 0 1 1 1 0 Met-10+ like-protein DUF499 PF04465.7 gi|327311588|ref|YP_004338485.1| - 5.7e-08 30.8 0.0 5.1e-07 27.6 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF499) Peptidase_M3_N PF08439.5 gi|327311588|ref|YP_004338485.1| - 0.047 13.7 0.3 0.25 11.4 0.0 2.3 2 0 0 2 2 2 0 Oligopeptidase F SNF2_N PF00176.18 gi|327311590|ref|YP_004338487.1| - 1.2e-19 70.2 0.0 3.8e-19 68.6 0.0 1.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|327311590|ref|YP_004338487.1| - 7.4e-11 41.7 0.0 1.7e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF3883 PF13020.1 gi|327311590|ref|YP_004338487.1| - 8.1e-10 38.3 0.0 2.6e-09 36.6 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) ResIII PF04851.10 gi|327311590|ref|YP_004338487.1| - 8.8e-06 25.6 0.0 0.00035 20.4 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|327311590|ref|YP_004338487.1| - 0.0013 18.2 0.0 0.023 14.2 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase NERD PF08378.6 gi|327311590|ref|YP_004338487.1| - 0.0091 16.2 0.0 0.029 14.6 0.0 1.9 1 0 0 1 1 1 1 Nuclease-related domain Methyltransf_24 PF13578.1 gi|327311590|ref|YP_004338487.1| - 0.071 13.9 0.1 15 6.4 0.0 3.5 3 0 0 3 3 3 0 Methyltransferase domain Zn-ribbon_8 PF09723.5 gi|327311591|ref|YP_004338488.1| - 0.00058 19.7 2.7 0.22 11.4 0.2 2.3 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|327311591|ref|YP_004338488.1| - 0.0022 17.7 2.2 0.0033 17.1 1.5 1.3 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|327311591|ref|YP_004338488.1| - 0.0028 17.9 0.3 0.0031 17.7 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|327311591|ref|YP_004338488.1| - 0.0068 15.8 2.9 0.036 13.5 2.0 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327311591|ref|YP_004338488.1| - 0.0077 15.4 2.8 0.043 13.0 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327311591|ref|YP_004338488.1| - 0.0091 15.3 4.4 0.089 12.1 3.1 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding DUF35_N PF12172.3 gi|327311591|ref|YP_004338488.1| - 0.018 14.9 3.1 1.7 8.6 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-TFIIB PF13453.1 gi|327311591|ref|YP_004338488.1| - 0.022 13.9 2.3 0.038 13.1 1.6 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger Elf1 PF05129.8 gi|327311591|ref|YP_004338488.1| - 0.024 14.3 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C2H2_4 PF13894.1 gi|327311591|ref|YP_004338488.1| - 0.039 14.2 0.7 6.2 7.3 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Sec23_Sec24 PF04810.10 gi|327311591|ref|YP_004338488.1| - 0.042 13.4 1.3 1.3 8.6 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger TFIIS_C PF01096.13 gi|327311591|ref|YP_004338488.1| - 0.045 13.3 2.4 2.6 7.7 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) GFA PF04828.9 gi|327311591|ref|YP_004338488.1| - 0.061 13.2 1.1 0.12 12.3 0.3 1.7 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.14 gi|327311591|ref|YP_004338488.1| - 0.064 12.9 0.4 3.3 7.4 0.0 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Terminase_GpA PF05876.7 gi|327311591|ref|YP_004338488.1| - 0.07 11.4 0.4 0.075 11.3 0.3 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DUF968 PF06147.6 gi|327311591|ref|YP_004338488.1| - 0.077 12.8 0.5 0.089 12.6 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF968) Zn_Tnp_IS1 PF03811.8 gi|327311591|ref|YP_004338488.1| - 0.11 12.0 2.8 5.1 6.6 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain DZR PF12773.2 gi|327311591|ref|YP_004338488.1| - 0.12 12.2 0.8 0.29 10.9 0.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.21 gi|327311591|ref|YP_004338488.1| - 0.17 12.2 2.1 13 6.3 0.0 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Mu-like_Com PF10122.4 gi|327311591|ref|YP_004338488.1| - 0.19 10.8 3.2 3.7 6.6 0.0 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF2296 PF10058.4 gi|327311591|ref|YP_004338488.1| - 0.32 10.7 1.7 3.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) A2L_zn_ribbon PF08792.5 gi|327311591|ref|YP_004338488.1| - 0.33 10.4 2.4 2.4 7.7 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|327311591|ref|YP_004338488.1| - 0.33 10.6 1.8 1.1 8.9 1.2 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-IS66 PF13005.2 gi|327311591|ref|YP_004338488.1| - 0.33 10.9 3.7 7 6.7 0.6 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.1 gi|327311591|ref|YP_004338488.1| - 0.56 10.2 6.4 2.4 8.2 0.4 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.8 gi|327311591|ref|YP_004338488.1| - 0.69 9.4 3.5 3.8 7.0 0.4 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|327311591|ref|YP_004338488.1| - 4 7.2 5.8 9.9 5.9 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prim_Zn_Ribbon PF08273.7 gi|327311591|ref|YP_004338488.1| - 4.8 7.3 6.1 58 3.8 4.2 2.1 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF86 PF01934.12 gi|327311592|ref|YP_004338489.1| - 0.0099 15.5 0.0 0.01 15.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|327311593|ref|YP_004338490.1| - 0.00087 19.5 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Spore_YhcN_YlaJ PF09580.5 gi|327311593|ref|YP_004338490.1| - 0.025 14.6 0.0 0.035 14.2 0.0 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DUF3107 PF11305.3 gi|327311593|ref|YP_004338490.1| - 0.069 13.0 0.2 1.1 9.1 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3107) PaREP1 PF05942.6 gi|327311594|ref|YP_004338491.1| - 2.8e-27 94.8 8.2 4e-27 94.3 5.7 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|327311594|ref|YP_004338491.1| - 0.054 13.3 1.7 0.073 12.9 1.2 1.3 1 0 0 1 1 1 0 HEPN domain MIT PF04212.13 gi|327311594|ref|YP_004338491.1| - 0.17 11.7 1.6 3 7.7 0.1 2.5 1 1 1 2 2 2 0 MIT (microtubule interacting and transport) domain TPP_enzyme_C PF02775.16 gi|327311597|ref|YP_004338494.1| - 5.8e-22 77.9 0.2 8.9e-22 77.3 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|327311597|ref|YP_004338494.1| - 0.00054 18.9 0.0 0.00071 18.5 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.14 gi|327311598|ref|YP_004338495.1| - 2.6e-71 239.8 0.3 3.3e-71 239.4 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|327311598|ref|YP_004338495.1| - 1.3e-06 28.3 0.1 2.6e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|327311599|ref|YP_004338496.1| - 4e-14 51.5 16.4 8.1e-08 31.5 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|327311599|ref|YP_004338496.1| - 5.9e-11 41.9 22.5 5.6e-08 32.4 8.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327311599|ref|YP_004338496.1| - 1e-10 40.9 12.8 6.1e-06 25.8 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|327311599|ref|YP_004338496.1| - 2e-10 40.3 9.0 2.4e-10 40.1 6.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|327311599|ref|YP_004338496.1| - 3.7e-10 40.0 9.3 5.1e-10 39.5 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327311599|ref|YP_004338496.1| - 5.8e-10 38.4 11.7 1e-05 25.1 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|327311599|ref|YP_004338496.1| - 1.5e-08 34.7 11.3 1.9e-08 34.4 7.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327311599|ref|YP_004338496.1| - 3.2e-08 34.2 10.4 0.00018 22.2 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|327311599|ref|YP_004338496.1| - 8.3e-07 29.4 6.8 0.004 17.6 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|327311599|ref|YP_004338496.1| - 3.4e-06 27.3 3.8 0.016 15.5 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|327311599|ref|YP_004338496.1| - 3.2e-05 24.2 10.8 0.00034 20.9 0.6 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|327311599|ref|YP_004338496.1| - 0.00021 21.2 10.4 0.00099 19.0 7.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|327311599|ref|YP_004338496.1| - 0.0005 20.1 13.0 0.02 15.2 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|327311599|ref|YP_004338496.1| - 0.0016 18.7 12.8 0.039 14.3 1.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327311599|ref|YP_004338496.1| - 0.089 13.3 6.2 0.089 13.3 4.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|327311600|ref|YP_004338497.1| - 2.2e-27 96.0 2.6 3.2e-27 95.5 1.8 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Glyco_hydro_57 PF03065.10 gi|327311601|ref|YP_004338498.1| - 3.4e-42 144.6 0.4 2.4e-41 141.8 0.3 2.0 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 SBP_bac_8 PF13416.1 gi|327311602|ref|YP_004338499.1| - 1.1e-20 74.5 10.2 1.9e-20 73.7 7.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein GDPD_2 PF13653.1 gi|327311602|ref|YP_004338499.1| - 0.027 14.6 0.2 0.24 11.6 0.0 2.4 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family BPD_transp_1 PF00528.17 gi|327311603|ref|YP_004338500.1| - 1.9e-15 56.8 24.3 1.9e-15 56.8 16.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|327311604|ref|YP_004338501.1| - 1.6e-17 63.6 22.2 1.6e-17 63.6 15.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UDPG_MGDP_dh_N PF03721.9 gi|327311605|ref|YP_004338502.1| - 2.1e-39 134.8 1.4 4.4e-39 133.7 0.8 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|327311605|ref|YP_004338502.1| - 9.9e-24 83.5 0.0 2.8e-23 82.1 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|327311605|ref|YP_004338502.1| - 7.1e-18 64.6 0.0 1.9e-17 63.2 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.10 gi|327311605|ref|YP_004338502.1| - 0.0003 20.6 0.5 0.0042 16.9 0.3 2.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|327311605|ref|YP_004338502.1| - 0.00067 19.4 3.4 0.6 9.8 0.6 2.8 3 1 0 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|327311605|ref|YP_004338502.1| - 0.00073 18.7 0.1 0.18 10.9 0.1 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|327311605|ref|YP_004338502.1| - 0.00099 18.8 1.5 0.0025 17.4 1.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|327311605|ref|YP_004338502.1| - 0.0017 18.7 9.2 0.29 11.6 0.8 4.1 4 1 0 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|327311605|ref|YP_004338502.1| - 0.002 18.1 2.3 0.031 14.2 0.2 2.7 2 0 0 2 2 2 1 TrkA-N domain ThiF PF00899.16 gi|327311605|ref|YP_004338502.1| - 0.033 14.0 0.9 0.14 11.9 0.2 2.2 2 0 0 2 2 2 0 ThiF family Methyltransf_18 PF12847.2 gi|327311605|ref|YP_004338502.1| - 0.04 14.4 0.2 0.16 12.5 0.1 2.2 2 1 0 2 2 2 0 Methyltransferase domain Pyr_redox PF00070.22 gi|327311605|ref|YP_004338502.1| - 0.66 10.4 8.4 0.58 10.6 2.9 2.9 2 2 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Peripla_BP_2 PF01497.13 gi|327311606|ref|YP_004338503.1| - 7.1e-10 38.4 0.0 1e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF711 PF05167.7 gi|327311607|ref|YP_004338504.1| - 1.7e-51 175.2 0.0 2.3e-50 171.4 0.0 2.0 2 0 0 2 2 2 1 Uncharacterised ACR (DUF711) GAF_2 PF13185.1 gi|327311607|ref|YP_004338504.1| - 0.097 13.1 0.5 0.35 11.3 0.1 2.1 1 1 1 2 2 2 0 GAF domain DUF1886 PF09171.5 gi|327311608|ref|YP_004338505.1| - 1.1e-06 27.8 0.0 1.7e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) EndIII_4Fe-2S PF10576.4 gi|327311608|ref|YP_004338505.1| - 0.019 15.1 4.3 0.032 14.4 3.0 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III PDDEXK_1 PF12705.2 gi|327311608|ref|YP_004338505.1| - 0.046 13.0 0.1 0.098 12.0 0.1 1.7 1 1 1 2 2 2 0 PD-(D/E)XK nuclease superfamily HTH_10 PF04967.7 gi|327311608|ref|YP_004338505.1| - 0.077 12.5 0.0 11 5.6 0.0 3.3 3 0 0 3 3 3 0 HTH DNA binding domain PTPS PF01242.14 gi|327311609|ref|YP_004338506.1| - 1.2e-09 37.8 0.0 1.4e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase IlvN PF07991.7 gi|327311610|ref|YP_004338507.1| - 1.8e-44 151.0 0.0 2.5e-44 150.5 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|327311610|ref|YP_004338507.1| - 4.2e-08 32.5 0.0 6.9e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|327311610|ref|YP_004338507.1| - 2.4e-07 31.1 0.0 5.3e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|327311610|ref|YP_004338507.1| - 1.5e-06 28.1 0.0 2.6e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvC PF01450.14 gi|327311610|ref|YP_004338507.1| - 1.6e-06 28.1 0.0 2.8e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|327311610|ref|YP_004338507.1| - 6.3e-06 26.1 0.0 1e-05 25.4 0.0 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|327311610|ref|YP_004338507.1| - 0.016 14.8 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|327311610|ref|YP_004338507.1| - 0.035 14.1 0.2 0.095 12.6 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain ELFV_dehydrog PF00208.16 gi|327311610|ref|YP_004338507.1| - 0.059 12.9 0.0 0.099 12.2 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_7 PF13241.1 gi|327311610|ref|YP_004338507.1| - 0.14 12.3 0.0 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiS PF02597.15 gi|327311611|ref|YP_004338508.1| - 1.3e-08 35.1 0.0 1.5e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|327311611|ref|YP_004338508.1| - 0.042 13.6 0.3 1.2 9.0 0.2 2.5 1 1 0 1 1 1 0 TGS domain AFOR_C PF01314.13 gi|327311612|ref|YP_004338509.1| - 2.7e-115 385.0 0.0 3.5e-115 384.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|327311612|ref|YP_004338509.1| - 2e-70 236.2 0.3 2.9e-70 235.7 0.2 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.15 gi|327311613|ref|YP_004338510.1| - 1.5e-19 70.1 0.0 1.8e-19 69.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|327311613|ref|YP_004338510.1| - 0.0001 22.0 0.2 0.33 10.8 0.0 2.4 2 1 0 2 2 2 2 TGS domain Urm1 PF09138.6 gi|327311613|ref|YP_004338510.1| - 0.0011 19.0 0.0 0.0012 18.9 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) RHH_1 PF01402.16 gi|327311614|ref|YP_004338511.1| - 0.00079 19.2 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Fumerase PF05681.9 gi|327311615|ref|YP_004338512.1| - 3.6e-85 285.3 0.0 4.1e-85 285.1 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) ATP-synt_DE PF00401.15 gi|327311615|ref|YP_004338512.1| - 0.061 13.2 1.3 0.061 13.2 0.9 2.0 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain H-K_ATPase_N PF09040.6 gi|327311615|ref|YP_004338512.1| - 0.15 12.2 1.2 0.46 10.6 0.1 2.2 2 0 0 2 2 2 0 Gastric H+/K+-ATPase, N terminal domain Fumerase_C PF05683.7 gi|327311616|ref|YP_004338513.1| - 1.2e-59 200.9 0.1 1.4e-59 200.7 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Acetyltransf_3 PF13302.1 gi|327311617|ref|YP_004338514.1| - 1.4e-06 28.5 0.0 1.6e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|327311617|ref|YP_004338514.1| - 9.2e-06 25.6 0.0 1.8e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FBPase_3 PF01950.11 gi|327311618|ref|YP_004338515.1| - 7.5e-179 594.3 0.0 9.2e-179 594.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase AMP-binding PF00501.23 gi|327311619|ref|YP_004338516.1| - 2.9e-96 322.4 0.0 3.5e-96 322.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|327311619|ref|YP_004338516.1| - 5e-25 88.2 0.5 1.4e-24 86.7 0.2 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Grp1_Fun34_YaaH PF01184.14 gi|327311620|ref|YP_004338517.1| - 2.5e-40 138.0 35.7 1.3e-39 135.6 24.8 1.8 1 1 0 1 1 1 1 GPR1/FUN34/yaaH family Asp_protease_2 PF13650.1 gi|327311621|ref|YP_004338518.1| - 5.7e-07 29.9 0.0 6.8e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|327311621|ref|YP_004338518.1| - 7.7e-06 25.7 0.0 8.9e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|327311621|ref|YP_004338518.1| - 5.6e-05 22.8 0.0 9.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Uroplakin_II PF07353.7 gi|327311621|ref|YP_004338518.1| - 0.024 13.9 0.0 0.029 13.7 0.0 1.1 1 0 0 1 1 1 0 Uroplakin II MarC PF01914.12 gi|327311622|ref|YP_004338519.1| - 6.2e-25 87.5 14.3 7.9e-25 87.1 9.9 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein CcmB PF03379.8 gi|327311622|ref|YP_004338519.1| - 0.041 13.0 6.1 0.057 12.6 4.3 1.2 1 0 0 1 1 1 0 CcmB protein POR_N PF01855.14 gi|327311624|ref|YP_004338521.1| - 2.2e-52 177.8 0.1 3.7e-52 177.1 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|327311624|ref|YP_004338521.1| - 8.3e-28 97.4 0.2 2.7e-27 95.7 0.0 1.8 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|327311625|ref|YP_004338522.1| - 4.3e-29 101.0 0.0 8.2e-29 100.1 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|327311625|ref|YP_004338522.1| - 8.3e-14 51.2 2.4 8.7e-13 47.9 1.7 2.2 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DAHP_synth_1 PF00793.15 gi|327311626|ref|YP_004338523.1| - 3.7e-73 245.5 0.0 5e-73 245.1 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|327311626|ref|YP_004338523.1| - 3e-06 26.5 0.0 6.5e-06 25.4 0.0 1.5 1 1 0 1 1 1 1 NeuB family PA PF02225.17 gi|327311626|ref|YP_004338523.1| - 0.13 11.9 0.9 9 6.0 0.0 3.1 3 0 0 3 3 3 0 PA domain tRNA-synt_1b PF00579.20 gi|327311627|ref|YP_004338524.1| - 7.1e-35 120.5 0.0 6.1e-33 114.1 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Transketolase_N PF00456.16 gi|327311628|ref|YP_004338525.1| - 1.9e-41 142.0 0.1 4.2e-41 140.8 0.1 1.4 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|327311628|ref|YP_004338525.1| - 4.5e-12 45.4 0.2 3e-06 26.3 0.1 3.0 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|327311628|ref|YP_004338525.1| - 8.2e-08 31.9 1.7 3.9e-06 26.5 1.2 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.15 gi|327311628|ref|YP_004338525.1| - 0.00021 20.1 0.0 0.00025 19.8 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component Transket_pyr PF02779.19 gi|327311629|ref|YP_004338526.1| - 1.1e-36 125.9 0.2 2.2e-36 125.0 0.1 1.5 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|327311629|ref|YP_004338526.1| - 7.2e-25 87.3 0.0 1.4e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain DHQ_synthase PF01761.15 gi|327311630|ref|YP_004338527.1| - 9.5e-84 280.3 0.0 1.1e-83 280.1 0.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|327311630|ref|YP_004338527.1| - 3.2e-07 29.9 1.2 2.8e-06 26.8 0.8 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|327311630|ref|YP_004338527.1| - 0.00013 20.7 1.5 0.026 13.1 0.3 2.6 2 1 0 2 2 2 2 Iron-containing alcohol dehydrogenase DUF1851 PF08906.6 gi|327311630|ref|YP_004338527.1| - 0.023 14.6 0.1 0.093 12.7 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1851) EPSP_synthase PF00275.15 gi|327311631|ref|YP_004338528.1| - 3.3e-58 197.0 0.0 4.4e-58 196.6 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Aminotran_1_2 PF00155.16 gi|327311632|ref|YP_004338529.1| - 5.6e-37 127.5 0.0 1.4e-36 126.1 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|327311632|ref|YP_004338529.1| - 4.3e-05 22.3 0.0 6.8e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Allinase Peptidase_S9 PF00326.16 gi|327311633|ref|YP_004338530.1| - 2.2e-52 177.3 0.0 4e-52 176.5 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|327311633|ref|YP_004338530.1| - 8.9e-11 41.7 0.0 1.8e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|327311633|ref|YP_004338530.1| - 4.2e-10 39.5 0.1 3.8e-06 26.5 0.1 2.4 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.7 gi|327311633|ref|YP_004338530.1| - 5e-09 35.6 7.8 0.0045 16.6 0.0 4.9 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat AXE1 PF05448.7 gi|327311633|ref|YP_004338530.1| - 2.1e-08 33.0 0.6 2.9e-06 26.0 0.4 2.3 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DPPIV_N PF00930.16 gi|327311633|ref|YP_004338530.1| - 1.8e-05 23.4 0.2 2.4 6.6 0.0 4.3 2 1 1 4 4 4 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_3 PF07859.8 gi|327311633|ref|YP_004338530.1| - 0.00037 20.1 0.0 0.36 10.3 0.0 2.5 1 1 1 2 2 2 2 alpha/beta hydrolase fold eIF2A PF08662.6 gi|327311633|ref|YP_004338530.1| - 0.0018 18.0 0.0 0.23 11.1 0.0 3.3 3 1 1 4 4 4 2 Eukaryotic translation initiation factor eIF2A WD40 PF00400.27 gi|327311633|ref|YP_004338530.1| - 0.0019 17.9 0.3 6.1 6.8 0.0 3.5 3 1 0 3 3 3 2 WD domain, G-beta repeat Abhydrolase_1 PF00561.15 gi|327311633|ref|YP_004338530.1| - 0.0046 16.5 0.0 0.024 14.1 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold DHquinase_I PF01487.10 gi|327311634|ref|YP_004338531.1| - 2.9e-50 170.9 0.0 3.7e-50 170.6 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase CM_2 PF01817.16 gi|327311634|ref|YP_004338531.1| - 6.4e-13 48.6 0.2 3.1e-12 46.4 0.1 2.2 2 1 0 2 2 2 1 Chorismate mutase type II Shikimate_dh_N PF08501.6 gi|327311635|ref|YP_004338532.1| - 1.6e-23 82.5 0.0 3.8e-23 81.3 0.0 1.7 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|327311635|ref|YP_004338532.1| - 1.7e-15 57.3 0.1 3.1e-15 56.4 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|327311635|ref|YP_004338532.1| - 3.9e-06 27.2 1.1 1e-05 25.8 0.5 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|327311635|ref|YP_004338532.1| - 0.00011 21.2 0.4 0.00016 20.8 0.3 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|327311635|ref|YP_004338532.1| - 0.00043 20.4 0.2 0.00079 19.6 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding adh_short PF00106.20 gi|327311635|ref|YP_004338532.1| - 0.003 17.4 4.0 0.011 15.6 2.9 1.8 2 0 0 2 2 2 1 short chain dehydrogenase GXGXG PF01493.14 gi|327311635|ref|YP_004338532.1| - 0.038 13.0 0.1 0.058 12.3 0.1 1.3 1 0 0 1 1 1 0 GXGXG motif Asp_protease PF09668.5 gi|327311635|ref|YP_004338532.1| - 0.12 11.9 0.3 3 7.4 0.1 2.2 2 0 0 2 2 2 0 Aspartyl protease Chorismate_synt PF01264.16 gi|327311636|ref|YP_004338533.1| - 2.5e-128 427.4 0.0 2.8e-128 427.2 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase GHMP_kinases_N PF00288.21 gi|327311637|ref|YP_004338534.1| - 4.3e-11 42.7 3.1 1.2e-10 41.3 2.1 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain Glyco_hydro_31 PF01055.21 gi|327311638|ref|YP_004338535.1| - 9.6e-140 466.2 0.0 1.1e-139 466.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|327311638|ref|YP_004338535.1| - 4.1e-13 48.9 0.0 1e-12 47.6 0.0 1.7 1 0 0 1 1 1 1 Galactose mutarotase-like DUF187 PF02638.10 gi|327311638|ref|YP_004338535.1| - 0.0018 17.2 0.1 0.0087 14.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase like GH101 Alpha-amylase PF00128.19 gi|327311639|ref|YP_004338536.1| - 6.7e-37 127.5 0.0 1e-36 126.9 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF2175 PF09943.4 gi|327311640|ref|YP_004338537.1| - 1.9e-29 101.6 0.2 2.2e-29 101.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) IF2_N PF04760.10 gi|327311640|ref|YP_004338537.1| - 0.013 15.1 0.2 0.019 14.6 0.1 1.3 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region TnpB_IS66 PF05717.8 gi|327311640|ref|YP_004338537.1| - 0.064 12.6 0.0 4.5 6.7 0.0 2.2 2 0 0 2 2 2 0 IS66 Orf2 like protein Inhibitor_I9 PF05922.11 gi|327311640|ref|YP_004338537.1| - 0.077 13.5 0.2 0.22 12.1 0.1 1.8 1 1 0 1 1 1 0 Peptidase inhibitor I9 Ribosomal_L3 PF00297.17 gi|327311641|ref|YP_004338538.1| - 1.4e-61 208.2 0.0 1.6e-61 208.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 PIN PF01850.16 gi|327311642|ref|YP_004338539.1| - 1.1e-16 61.2 1.1 3.7e-16 59.5 0.8 1.7 1 1 0 1 1 1 1 PIN domain Ribosomal_L4 PF00573.17 gi|327311644|ref|YP_004338541.1| - 5.2e-42 143.4 0.0 6e-42 143.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|327311645|ref|YP_004338542.1| - 3.9e-16 58.7 0.8 5.2e-16 58.3 0.6 1.2 1 1 0 1 1 1 1 Ribosomal protein L23 DUF3909 PF13077.1 gi|327311645|ref|YP_004338542.1| - 0.061 13.1 0.0 0.08 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3909) Dsl1_N PF11988.3 gi|327311645|ref|YP_004338542.1| - 0.073 11.9 0.0 0.08 11.8 0.0 1.0 1 0 0 1 1 1 0 Retrograde transport protein Dsl1 N terminal Auto_anti-p27 PF06677.7 gi|327311646|ref|YP_004338543.1| - 0.00034 20.3 2.3 0.00034 20.3 1.6 1.6 2 0 0 2 2 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|327311646|ref|YP_004338543.1| - 0.003 17.2 1.2 0.0071 16.0 0.9 1.5 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.6 gi|327311646|ref|YP_004338543.1| - 0.0032 17.0 0.7 0.0053 16.3 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.14 gi|327311646|ref|YP_004338543.1| - 0.004 16.8 0.1 0.0064 16.1 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|327311646|ref|YP_004338543.1| - 0.0053 16.4 1.8 0.0086 15.7 1.3 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|327311646|ref|YP_004338543.1| - 0.0098 15.3 0.7 0.023 14.2 0.5 1.6 1 1 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|327311646|ref|YP_004338543.1| - 0.011 15.6 3.2 0.083 12.8 2.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF1610 PF07754.6 gi|327311646|ref|YP_004338543.1| - 0.012 15.6 6.7 0.2 11.7 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DZR PF12773.2 gi|327311646|ref|YP_004338543.1| - 0.024 14.4 0.5 0.041 13.6 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|327311646|ref|YP_004338543.1| - 0.024 14.4 2.6 0.67 9.8 0.0 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|327311646|ref|YP_004338543.1| - 0.025 14.3 0.3 0.039 13.7 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|327311646|ref|YP_004338543.1| - 0.051 13.2 1.3 1.5 8.5 0.1 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|327311646|ref|YP_004338543.1| - 0.055 12.7 2.4 7 6.0 0.1 2.2 1 1 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|327311646|ref|YP_004338543.1| - 0.058 13.4 4.2 1.2 9.1 0.3 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|327311646|ref|YP_004338543.1| - 0.062 12.5 4.1 0.38 10.0 3.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|327311646|ref|YP_004338543.1| - 0.11 12.2 1.4 5.4 6.7 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal NOB1_Zn_bind PF08772.6 gi|327311646|ref|YP_004338543.1| - 0.12 12.2 1.2 1 9.2 0.8 2.1 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.10 gi|327311646|ref|YP_004338543.1| - 0.12 11.8 0.2 0.21 11.0 0.2 1.4 1 0 0 1 1 1 0 RecR protein zf-NADH-PPase PF09297.6 gi|327311646|ref|YP_004338543.1| - 0.13 11.8 3.4 0.33 10.4 2.4 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-IS66 PF13005.2 gi|327311646|ref|YP_004338543.1| - 0.16 11.9 2.0 12 5.9 0.1 2.6 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Lar_restr_allev PF14354.1 gi|327311646|ref|YP_004338543.1| - 0.25 11.6 1.7 5 7.4 0.1 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar Ogr_Delta PF04606.7 gi|327311646|ref|YP_004338543.1| - 0.37 10.4 2.3 3 7.5 0.2 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|327311646|ref|YP_004338543.1| - 0.54 9.8 4.6 1 8.9 0.5 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1936 PF09151.5 gi|327311646|ref|YP_004338543.1| - 1.8 8.1 5.3 2.8 7.5 0.2 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) Zn_ribbon_recom PF13408.1 gi|327311646|ref|YP_004338543.1| - 2 8.7 4.6 7.1 6.9 0.6 2.3 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Cys_rich_KTR PF14205.1 gi|327311646|ref|YP_004338543.1| - 2.5 7.6 5.8 12 5.4 0.3 2.3 1 1 1 2 2 2 0 Cysteine-rich KTR DUF2067 PF09840.4 gi|327311647|ref|YP_004338544.1| - 5.3e-37 127.1 0.1 6.3e-37 126.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) BMC PF00936.14 gi|327311647|ref|YP_004338544.1| - 0.088 12.4 0.1 0.98 9.1 0.0 2.3 2 0 0 2 2 2 0 BMC domain RNA_pol_L_2 PF13656.1 gi|327311648|ref|YP_004338545.1| - 1.2e-19 69.4 0.0 1.4e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|327311648|ref|YP_004338545.1| - 0.00081 18.4 0.0 0.0011 18.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain LytTR PF04397.10 gi|327311648|ref|YP_004338545.1| - 0.13 12.3 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 LytTr DNA-binding domain Methyltransf_26 PF13659.1 gi|327311649|ref|YP_004338546.1| - 1.1e-06 28.6 1.7 3e-06 27.2 1.2 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327311649|ref|YP_004338546.1| - 2.3e-06 27.2 0.3 3.6e-06 26.6 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|327311649|ref|YP_004338546.1| - 3.9e-06 26.3 0.5 1e-05 24.9 0.4 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|327311649|ref|YP_004338546.1| - 9e-06 26.2 0.1 1.1e-05 25.9 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|327311649|ref|YP_004338546.1| - 0.00027 21.3 0.1 0.00045 20.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327311649|ref|YP_004338546.1| - 0.0003 21.2 0.4 0.00054 20.3 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|327311649|ref|YP_004338546.1| - 0.0009 19.5 0.1 0.0016 18.7 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|327311649|ref|YP_004338546.1| - 0.0015 17.7 0.2 0.002 17.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|327311649|ref|YP_004338546.1| - 0.091 12.3 1.5 0.27 10.7 1.0 1.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 EMG1 PF03587.9 gi|327311651|ref|YP_004338548.1| - 8e-47 159.1 0.0 9e-47 158.9 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase DUF3087 PF11286.3 gi|327311652|ref|YP_004338549.1| - 0.03 13.5 0.2 0.03 13.5 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3087) DUF996 PF06195.8 gi|327311652|ref|YP_004338549.1| - 3.9 7.4 30.2 0.76 9.7 10.0 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF996) TruB_N PF01509.13 gi|327311653|ref|YP_004338550.1| - 0.045 13.9 0.0 3 7.9 0.0 2.1 2 0 0 2 2 2 0 TruB family pseudouridylate synthase (N terminal domain) Sec61_beta PF03911.11 gi|327311654|ref|YP_004338551.1| - 7.2e-11 41.7 0.4 9.1e-11 41.3 0.3 1.1 1 0 0 1 1 1 1 Sec61beta family TatD_DNase PF01026.16 gi|327311655|ref|YP_004338552.1| - 3.5e-21 75.5 0.0 4.5e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase STAS_2 PF13466.1 gi|327311655|ref|YP_004338552.1| - 0.078 13.0 1.2 0.18 11.8 0.9 1.6 1 0 0 1 1 1 0 STAS domain Na_H_antiporter PF03553.9 gi|327311655|ref|YP_004338552.1| - 0.22 10.5 0.0 0.29 10.1 0.0 1.1 1 0 0 1 1 1 0 Na+/H+ antiporter family DegT_DnrJ_EryC1 PF01041.12 gi|327311657|ref|YP_004338554.1| - 4.3e-117 391.2 0.0 5.4e-117 390.8 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|327311657|ref|YP_004338554.1| - 3.2e-09 36.0 0.2 4.9e-09 35.4 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|327311657|ref|YP_004338554.1| - 6.4e-08 31.9 0.1 1.9e-07 30.4 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|327311657|ref|YP_004338554.1| - 7.2e-08 31.9 0.1 9.4e-08 31.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|327311657|ref|YP_004338554.1| - 2.5e-06 26.0 0.1 3.2e-06 25.6 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme ALS_ss_C PF10369.4 gi|327311657|ref|YP_004338554.1| - 0.0012 18.5 0.0 0.0073 16.0 0.0 2.1 2 0 0 2 2 2 1 Small subunit of acetolactate synthase OKR_DC_1 PF01276.15 gi|327311657|ref|YP_004338554.1| - 0.025 13.1 0.0 0.036 12.6 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Pribosyltran PF00156.22 gi|327311659|ref|YP_004338556.1| - 5.1e-19 68.2 0.1 8.1e-19 67.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain RXT2_N PF08595.6 gi|327311659|ref|YP_004338556.1| - 0.032 14.0 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 RXT2-like, N-terminal Peptidase_S24 PF00717.18 gi|327311660|ref|YP_004338557.1| - 4.6e-06 26.1 0.0 7e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like Cpn60_TCP1 PF00118.19 gi|327311661|ref|YP_004338558.1| - 8.4e-168 558.9 2.9 9.5e-168 558.7 2.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF2267 PF10025.4 gi|327311661|ref|YP_004338558.1| - 0.04 13.9 0.0 0.17 11.9 0.0 2.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) RNA_pol_Rpb6 PF01192.17 gi|327311662|ref|YP_004338559.1| - 1.6e-17 62.9 0.0 3.2e-17 62.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb6 Flavin_Reduct PF01613.13 gi|327311664|ref|YP_004338561.1| - 2e-28 99.1 0.0 2.4e-28 98.9 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF59 PF01883.14 gi|327311665|ref|YP_004338562.1| - 2.3e-12 46.7 0.1 3.5e-12 46.1 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF59 RtcR PF06956.6 gi|327311665|ref|YP_004338562.1| - 0.074 12.3 0.0 0.09 12.0 0.0 1.2 1 0 0 1 1 1 0 Regulator of RNA terminal phosphate cyclase Pribosyltran PF00156.22 gi|327311666|ref|YP_004338563.1| - 1.5e-18 66.6 0.6 2.6e-18 65.9 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|327311666|ref|YP_004338563.1| - 1.2e-06 28.2 0.5 4e-06 26.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|327311666|ref|YP_004338563.1| - 0.00039 20.5 1.3 0.0058 16.8 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|327311666|ref|YP_004338563.1| - 0.016 15.2 0.0 0.041 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|327311666|ref|YP_004338563.1| - 0.084 12.3 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 PALP PF00291.20 gi|327311667|ref|YP_004338564.1| - 0.00027 20.2 0.7 0.018 14.2 0.0 2.8 2 1 1 3 3 3 2 Pyridoxal-phosphate dependent enzyme PDH PF02153.12 gi|327311668|ref|YP_004338565.1| - 7e-10 38.2 0.0 8.6e-10 37.9 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|327311668|ref|YP_004338565.1| - 0.0027 18.1 3.3 0.25 11.7 1.7 3.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.1 gi|327311669|ref|YP_004338566.1| - 3.6e-17 62.3 0.3 6.1e-17 61.5 0.2 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|327311669|ref|YP_004338566.1| - 1.8e-12 47.5 0.1 4.2e-12 46.3 0.0 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|327311669|ref|YP_004338566.1| - 3e-07 30.4 0.0 4.7e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|327311669|ref|YP_004338566.1| - 1.3e-05 24.6 0.0 2.6e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|327311669|ref|YP_004338566.1| - 0.0001 21.5 0.0 0.00014 21.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|327311669|ref|YP_004338566.1| - 0.00025 20.5 0.1 0.00057 19.3 0.1 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ADH_N PF08240.7 gi|327311670|ref|YP_004338567.1| - 5e-34 116.3 0.2 1e-33 115.3 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|327311670|ref|YP_004338567.1| - 8.1e-22 77.1 0.1 1.2e-21 76.5 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|327311670|ref|YP_004338567.1| - 4.3e-08 34.1 1.3 1.8e-07 32.1 0.0 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Eno-Rase_NADH_b PF12242.3 gi|327311670|ref|YP_004338567.1| - 0.0038 16.9 1.6 0.0098 15.6 1.1 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ACP_syn_III_C PF08541.5 gi|327311670|ref|YP_004338567.1| - 0.019 14.9 0.4 0.046 13.7 0.2 1.6 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AlaDh_PNT_C PF01262.16 gi|327311670|ref|YP_004338567.1| - 0.022 14.3 1.4 0.037 13.6 0.9 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain OsmC PF02566.14 gi|327311670|ref|YP_004338567.1| - 0.077 13.1 0.0 0.25 11.5 0.0 1.9 2 0 0 2 2 2 0 OsmC-like protein RRN7 PF11781.3 gi|327311671|ref|YP_004338568.1| - 3.2e-05 23.3 0.3 6e-05 22.4 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|327311671|ref|YP_004338568.1| - 0.00028 20.1 2.2 0.00053 19.2 1.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|327311671|ref|YP_004338568.1| - 0.0036 17.3 0.7 0.0036 17.3 0.5 1.9 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|327311671|ref|YP_004338568.1| - 0.025 14.8 0.4 0.061 13.6 0.2 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar TFIIB PF00382.14 gi|327311671|ref|YP_004338568.1| - 0.027 14.2 0.8 1.1 9.0 0.0 2.5 2 0 0 2 2 2 0 Transcription factor TFIIB repeat Prok-RING_1 PF14446.1 gi|327311671|ref|YP_004338568.1| - 0.067 12.9 0.5 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.6 gi|327311671|ref|YP_004338568.1| - 0.16 11.6 0.5 0.31 10.7 0.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|327311671|ref|YP_004338568.1| - 0.37 10.0 2.7 1 8.6 1.9 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.3 gi|327311671|ref|YP_004338568.1| - 0.78 9.7 7.5 5.9 6.9 0.1 3.4 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PcrB PF01884.12 gi|327311673|ref|YP_004338570.1| - 2.2e-60 203.7 0.0 2.7e-60 203.5 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|327311673|ref|YP_004338570.1| - 3.8e-05 23.0 0.0 7e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Elf1 PF05129.8 gi|327311674|ref|YP_004338571.1| - 1.7e-15 56.4 0.1 2e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|327311674|ref|YP_004338571.1| - 0.00078 19.7 0.3 0.0014 18.8 0.2 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Rubredoxin PF00301.15 gi|327311674|ref|YP_004338571.1| - 0.0094 15.8 0.5 0.071 13.0 0.0 2.2 2 0 0 2 2 2 1 Rubredoxin DUF2296 PF10058.4 gi|327311674|ref|YP_004338571.1| - 0.018 14.7 0.1 2.2 8.0 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) PhnA_Zn_Ribbon PF08274.7 gi|327311674|ref|YP_004338571.1| - 0.04 13.7 0.5 0.51 10.1 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|327311674|ref|YP_004338571.1| - 0.041 14.0 0.6 0.041 14.0 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|327311674|ref|YP_004338571.1| - 0.057 13.2 1.8 0.15 11.8 1.1 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|327311674|ref|YP_004338571.1| - 0.071 13.0 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.5 gi|327311674|ref|YP_004338571.1| - 0.082 12.8 0.4 0.15 12.0 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Ribosomal_L32p PF01783.18 gi|327311674|ref|YP_004338571.1| - 0.083 13.0 0.4 0.083 13.0 0.2 1.6 2 0 0 2 2 2 0 Ribosomal L32p protein family Ribosomal_S27 PF01599.14 gi|327311674|ref|YP_004338571.1| - 0.093 12.5 0.4 0.18 11.6 0.3 1.6 1 0 0 1 1 1 0 Ribosomal protein S27a RRN7 PF11781.3 gi|327311674|ref|YP_004338571.1| - 0.13 11.8 1.2 4.1 6.9 0.1 2.4 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Cys_rich_CPCC PF14206.1 gi|327311674|ref|YP_004338571.1| - 0.14 11.6 0.5 0.21 11.1 0.3 1.3 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-ribbon_3 PF13248.1 gi|327311674|ref|YP_004338571.1| - 0.16 11.2 5.9 1.2 8.3 4.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327311674|ref|YP_004338571.1| - 0.16 11.3 4.6 0.45 9.8 3.2 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.2 gi|327311674|ref|YP_004338571.1| - 0.22 11.3 1.3 0.55 10.0 0.9 1.7 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|327311674|ref|YP_004338571.1| - 0.37 10.3 2.6 0.44 10.0 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|327311674|ref|YP_004338571.1| - 0.41 10.1 2.7 2.9 7.4 0.1 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|327311674|ref|YP_004338571.1| - 0.42 10.1 2.7 1.3 8.5 1.9 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Inositol_P PF00459.20 gi|327311675|ref|YP_004338572.1| - 5.9e-21 74.9 0.0 8.1e-21 74.5 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|327311675|ref|YP_004338572.1| - 0.0024 16.7 0.0 0.0036 16.1 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase SWIM PF04434.12 gi|327311676|ref|YP_004338573.1| - 2.9e-05 23.4 0.0 3.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 SWIM zinc finger HD PF01966.17 gi|327311678|ref|YP_004338575.1| - 7.8e-09 35.5 0.3 1.9e-08 34.3 0.2 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|327311678|ref|YP_004338575.1| - 0.063 12.5 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 HDOD domain Methyltransf_26 PF13659.1 gi|327311680|ref|YP_004338577.1| - 1.7e-10 40.9 0.1 2.7e-10 40.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|327311680|ref|YP_004338577.1| - 1.2e-08 34.5 0.0 1.9e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|327311680|ref|YP_004338577.1| - 1.5e-07 32.0 0.0 2.7e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|327311680|ref|YP_004338577.1| - 7.8e-05 22.1 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synth PF01564.12 gi|327311680|ref|YP_004338577.1| - 0.00018 20.5 0.0 0.00023 20.2 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_11 PF08241.7 gi|327311680|ref|YP_004338577.1| - 0.00074 19.9 0.0 0.0014 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|327311680|ref|YP_004338577.1| - 0.031 13.9 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Peptidase_M24 PF00557.19 gi|327311681|ref|YP_004338578.1| - 8.3e-60 201.8 0.7 1.1e-59 201.4 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|327311681|ref|YP_004338578.1| - 5.9e-05 23.5 0.0 0.00011 22.6 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain ASCH PF04266.9 gi|327311682|ref|YP_004338579.1| - 2.3e-12 47.2 0.0 2.7e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 ASCH domain DUF3989 PF13150.1 gi|327311683|ref|YP_004338580.1| - 0.11 11.9 0.0 0.31 10.5 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3989) MarR_2 PF12802.2 gi|327311684|ref|YP_004338581.1| - 5.7e-09 35.5 0.1 1.4e-08 34.2 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|327311684|ref|YP_004338581.1| - 1.2e-07 31.3 0.0 3.5e-07 29.9 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|327311684|ref|YP_004338581.1| - 4.4e-06 26.1 0.0 9.8e-06 25.0 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|327311684|ref|YP_004338581.1| - 6.3e-06 25.8 0.1 1.2e-05 24.9 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|327311684|ref|YP_004338581.1| - 2.2e-05 24.6 0.1 3.9e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|327311684|ref|YP_004338581.1| - 3.7e-05 23.7 0.0 5e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.1 gi|327311684|ref|YP_004338581.1| - 4.6e-05 22.7 0.1 0.00014 21.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|327311684|ref|YP_004338581.1| - 9e-05 22.0 0.0 0.001 18.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|327311684|ref|YP_004338581.1| - 0.0002 20.7 0.0 0.00038 19.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|327311684|ref|YP_004338581.1| - 0.00037 20.3 0.0 0.00057 19.7 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|327311684|ref|YP_004338581.1| - 0.00066 19.3 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|327311684|ref|YP_004338581.1| - 0.0021 17.9 0.0 0.0031 17.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|327311684|ref|YP_004338581.1| - 0.0062 16.0 0.1 0.011 15.2 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.1 gi|327311684|ref|YP_004338581.1| - 0.0074 16.3 0.1 0.016 15.2 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain PaaX PF07848.7 gi|327311684|ref|YP_004338581.1| - 0.0095 15.9 0.1 0.014 15.3 0.1 1.3 1 0 0 1 1 1 1 PaaX-like protein HTH_Crp_2 PF13545.1 gi|327311684|ref|YP_004338581.1| - 0.037 13.8 1.1 0.096 12.4 0.4 1.9 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.7 gi|327311684|ref|YP_004338581.1| - 0.047 13.2 0.2 0.076 12.5 0.2 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|327311684|ref|YP_004338581.1| - 0.06 13.4 0.1 0.14 12.3 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator HTH_41 PF14502.1 gi|327311684|ref|YP_004338581.1| - 0.06 12.9 0.1 0.13 11.8 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain RPA_C PF08784.6 gi|327311684|ref|YP_004338581.1| - 0.065 13.6 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_29 PF13551.1 gi|327311684|ref|YP_004338581.1| - 0.09 12.9 0.2 0.17 12.0 0.1 1.5 2 0 0 2 2 2 0 Winged helix-turn helix zf-ribbon_3 PF13248.1 gi|327311687|ref|YP_004338584.1| - 4.6e-05 22.4 0.5 0.00015 20.8 0.4 1.7 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327311687|ref|YP_004338584.1| - 0.00029 20.2 3.4 0.15 11.5 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|327311687|ref|YP_004338584.1| - 0.0013 18.4 2.1 0.65 9.8 0.1 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zf-ZPR1 PF03367.8 gi|327311687|ref|YP_004338584.1| - 0.0026 16.9 0.2 0.0027 16.8 0.2 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Zn_ribbon_recom PF13408.1 gi|327311687|ref|YP_004338584.1| - 0.0032 17.7 0.3 0.6 10.4 0.0 2.1 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.1 gi|327311687|ref|YP_004338584.1| - 0.0038 17.2 0.3 2.3 8.2 0.0 2.2 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.1 gi|327311687|ref|YP_004338584.1| - 0.0043 16.2 0.1 0.66 9.2 0.0 2.2 2 0 0 2 2 2 1 Transcription factor zinc-finger Cys_rich_KTR PF14205.1 gi|327311687|ref|YP_004338584.1| - 0.0046 16.3 0.5 0.41 10.1 0.1 2.2 2 0 0 2 2 2 1 Cysteine-rich KTR Lar_restr_allev PF14354.1 gi|327311687|ref|YP_004338584.1| - 0.0049 17.1 0.2 3.6 7.9 0.0 2.1 2 0 0 2 2 2 1 Restriction alleviation protein Lar YdjO PF14169.1 gi|327311687|ref|YP_004338584.1| - 0.0079 15.6 0.2 0.15 11.5 0.1 2.0 2 0 0 2 2 2 1 Cold-inducible protein YdjO DZR PF12773.2 gi|327311687|ref|YP_004338584.1| - 0.0097 15.7 1.4 0.13 12.0 1.0 2.0 1 1 0 1 1 1 1 Double zinc ribbon zf-RING_3 PF14369.1 gi|327311687|ref|YP_004338584.1| - 0.011 15.6 0.2 2.7 8.0 0.0 2.2 2 0 0 2 2 2 0 zinc-finger Auto_anti-p27 PF06677.7 gi|327311687|ref|YP_004338584.1| - 0.012 15.3 1.2 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc-ribbons_6 PF07191.7 gi|327311687|ref|YP_004338584.1| - 0.015 15.0 0.5 0.026 14.2 0.4 1.4 1 1 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|327311687|ref|YP_004338584.1| - 0.021 14.7 1.6 2.5 8.1 1.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF2296 PF10058.4 gi|327311687|ref|YP_004338584.1| - 0.026 14.2 0.8 4.1 7.2 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-IS66 PF13005.2 gi|327311687|ref|YP_004338584.1| - 0.032 14.2 0.3 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|327311687|ref|YP_004338584.1| - 0.041 13.5 0.4 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-C2HC_2 PF13913.1 gi|327311687|ref|YP_004338584.1| - 0.042 13.5 2.1 3.4 7.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc_ribbon_4 PF13717.1 gi|327311687|ref|YP_004338584.1| - 0.051 13.2 0.6 9.6 5.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Chordopox_RPO7 PF05864.7 gi|327311687|ref|YP_004338584.1| - 0.055 13.5 0.4 0.066 13.3 0.3 1.2 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) zinc_ribbon_5 PF13719.1 gi|327311687|ref|YP_004338584.1| - 0.058 12.9 0.6 8.9 5.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|327311687|ref|YP_004338584.1| - 0.061 13.0 2.2 4.1 7.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Di19 PF05605.7 gi|327311687|ref|YP_004338584.1| - 0.069 13.2 1.6 0.26 11.4 1.1 1.8 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding OrfB_Zn_ribbon PF07282.6 gi|327311687|ref|YP_004338584.1| - 0.073 12.7 0.7 0.43 10.2 0.5 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Terminase_GpA PF05876.7 gi|327311687|ref|YP_004338584.1| - 0.078 11.3 0.0 0.094 11.0 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DUF329 PF03884.9 gi|327311687|ref|YP_004338584.1| - 0.087 12.3 0.2 2.4 7.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-NADH-PPase PF09297.6 gi|327311687|ref|YP_004338584.1| - 0.087 12.3 0.5 1.9 8.0 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|327311687|ref|YP_004338584.1| - 0.1 12.4 0.4 7.3 6.5 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG Ogr_Delta PF04606.7 gi|327311687|ref|YP_004338584.1| - 0.12 12.0 2.9 3.7 7.2 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Trm112p PF03966.11 gi|327311687|ref|YP_004338584.1| - 0.13 12.6 1.7 0.45 10.9 1.2 1.7 1 1 0 1 1 1 0 Trm112p-like protein TF_Zn_Ribbon PF08271.7 gi|327311687|ref|YP_004338584.1| - 0.14 11.4 0.9 4.5 6.6 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|327311687|ref|YP_004338584.1| - 0.16 11.8 4.8 1.2 9.0 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|327311687|ref|YP_004338584.1| - 0.16 11.8 2.4 1.2 9.0 1.8 1.9 1 1 0 1 1 1 0 Rubredoxin DUF164 PF02591.10 gi|327311687|ref|YP_004338584.1| - 0.17 11.7 0.6 5.8 6.8 0.1 2.1 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|327311687|ref|YP_004338584.1| - 0.18 11.3 3.2 1.1 8.7 0.2 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C3HC4_3 PF13920.1 gi|327311687|ref|YP_004338584.1| - 0.18 11.4 2.6 0.5 10.0 1.8 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) YhfH PF14149.1 gi|327311687|ref|YP_004338584.1| - 0.45 10.3 2.0 1.3 8.8 0.1 2.0 2 0 0 2 2 2 0 YhfH-like protein DUF4149 PF13664.1 gi|327311688|ref|YP_004338585.1| - 0.65 10.0 14.0 0.025 14.6 5.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) PsbN PF02468.10 gi|327311688|ref|YP_004338585.1| - 2.7 7.6 16.2 0.21 11.2 0.4 3.9 4 0 0 4 4 4 0 Photosystem II reaction centre N protein (psbN) Laminin_EGF PF00053.19 gi|327311689|ref|YP_004338586.1| - 0.08 12.8 5.0 0.13 12.1 3.4 1.3 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) RimK PF08443.6 gi|327311690|ref|YP_004338587.1| - 1.1e-43 148.9 0.0 1.4e-43 148.5 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|327311690|ref|YP_004338587.1| - 5.3e-17 61.4 0.0 8e-17 60.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|327311690|ref|YP_004338587.1| - 6.7e-12 45.5 0.0 9e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|327311690|ref|YP_004338587.1| - 1.4e-08 34.7 0.0 2.1e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|327311690|ref|YP_004338587.1| - 0.0013 17.5 0.0 0.0053 15.5 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon TTL PF03133.10 gi|327311690|ref|YP_004338587.1| - 0.0044 15.9 0.0 0.011 14.7 0.0 1.6 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family SRP54_N PF02881.14 gi|327311692|ref|YP_004338589.1| - 0.018 15.0 1.6 0.018 15.0 1.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, helical bundle domain Exonuc_VII_S PF02609.11 gi|327311692|ref|YP_004338589.1| - 0.02 14.6 0.8 0.059 13.1 0.1 2.2 2 0 0 2 2 2 0 Exonuclease VII small subunit CorA PF01544.13 gi|327311692|ref|YP_004338589.1| - 1.6 7.6 11.9 10 5.0 7.7 1.9 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein UDG PF03167.14 gi|327311693|ref|YP_004338590.1| - 5.6e-39 133.0 0.0 6.8e-39 132.7 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF2070 PF09843.4 gi|327311695|ref|YP_004338592.1| - 8.1e-38 129.6 0.0 2.2e-37 128.2 0.0 1.7 2 0 0 2 2 2 1 Predicted membrane protein (DUF2070) DUF2153 PF09921.4 gi|327311696|ref|YP_004338593.1| - 5.4e-43 145.6 0.0 6.7e-43 145.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) DUF1912 PF08930.5 gi|327311696|ref|YP_004338593.1| - 0.044 13.8 0.1 11 6.2 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1912) DUF4635 PF15466.1 gi|327311696|ref|YP_004338593.1| - 0.12 11.6 0.1 0.8 8.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4635) CagZ PF09053.5 gi|327311696|ref|YP_004338593.1| - 0.13 11.5 0.0 3 7.1 0.0 2.0 2 0 0 2 2 2 0 CagZ Met_10 PF02475.11 gi|327311697|ref|YP_004338594.1| - 6.4e-58 195.6 0.0 8e-58 195.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|327311697|ref|YP_004338594.1| - 0.0043 17.6 0.0 0.0076 16.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|327311697|ref|YP_004338594.1| - 0.019 13.9 0.0 0.023 13.6 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|327311697|ref|YP_004338594.1| - 0.04 13.3 0.0 0.061 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF4112 PF13430.1 gi|327311697|ref|YP_004338594.1| - 0.092 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4112) tRNA_U5-meth_tr PF05958.6 gi|327311697|ref|YP_004338594.1| - 0.093 11.4 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Rad51 PF08423.6 gi|327311698|ref|YP_004338595.1| - 2e-96 321.8 0.0 2.4e-96 321.5 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|327311698|ref|YP_004338595.1| - 2.9e-15 56.1 0.1 5e-15 55.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|327311698|ref|YP_004338595.1| - 5.1e-13 48.6 0.0 1.1e-12 47.5 0.0 1.7 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|327311698|ref|YP_004338595.1| - 1.3e-12 47.4 0.1 1.8e-12 46.9 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.1 gi|327311698|ref|YP_004338595.1| - 5.2e-11 42.5 1.9 1.3e-09 38.0 0.8 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_22 PF13401.1 gi|327311698|ref|YP_004338595.1| - 0.00011 22.3 0.0 0.00021 21.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|327311698|ref|YP_004338595.1| - 0.014 14.3 1.5 2.8 6.7 0.0 2.6 1 1 0 2 2 2 0 DnaB-like helicase C terminal domain UPF0079 PF02367.12 gi|327311698|ref|YP_004338595.1| - 0.014 15.0 0.1 0.043 13.4 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 BAF PF02961.9 gi|327311698|ref|YP_004338595.1| - 0.02 15.2 0.0 0.047 13.9 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor AAA_18 PF13238.1 gi|327311698|ref|YP_004338595.1| - 0.021 15.1 0.0 0.14 12.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain IMS_HHH PF11798.3 gi|327311698|ref|YP_004338595.1| - 0.027 14.5 0.0 0.063 13.3 0.0 1.6 1 0 0 1 1 1 0 IMS family HHH motif DUF1805 PF08827.6 gi|327311698|ref|YP_004338595.1| - 0.035 13.8 0.0 2.6 7.9 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1805) ABC_tran PF00005.22 gi|327311698|ref|YP_004338595.1| - 0.037 14.3 0.0 0.15 12.3 0.0 1.9 1 1 1 2 2 2 0 ABC transporter PAXNEB PF05625.6 gi|327311698|ref|YP_004338595.1| - 0.11 11.3 0.4 0.29 9.9 0.1 1.7 1 1 1 2 2 2 0 PAXNEB protein ATP_bind_1 PF03029.12 gi|327311698|ref|YP_004338595.1| - 0.11 12.0 0.0 0.26 10.7 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DNA_pol_lambd_f PF10391.4 gi|327311698|ref|YP_004338595.1| - 0.15 11.6 0.8 1.5 8.4 0.0 2.5 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda Radical_SAM PF04055.16 gi|327311700|ref|YP_004338597.1| - 3.9e-15 56.4 0.0 3.5e-14 53.3 0.0 2.4 3 0 0 3 3 3 1 Radical SAM superfamily RHH_1 PF01402.16 gi|327311701|ref|YP_004338598.1| - 0.038 13.8 0.1 0.9 9.5 0.0 2.7 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family HTH_7 PF02796.10 gi|327311701|ref|YP_004338598.1| - 0.13 12.1 0.1 0.5 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase zf-Di19 PF05605.7 gi|327311702|ref|YP_004338599.1| - 1.9e-08 34.3 5.6 3.9e-06 26.8 0.3 2.8 2 1 2 4 4 4 3 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.21 gi|327311702|ref|YP_004338599.1| - 1.1e-05 25.4 15.7 0.00017 21.7 0.1 4.2 4 2 0 4 4 3 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|327311702|ref|YP_004338599.1| - 1.5e-05 24.9 10.9 0.031 14.5 0.1 3.8 4 1 0 4 4 3 2 C2H2-type zinc finger DUF1677 PF07911.8 gi|327311702|ref|YP_004338599.1| - 0.0013 18.9 4.8 0.0038 17.3 0.4 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1677) DUF3279 PF11682.3 gi|327311702|ref|YP_004338599.1| - 0.0026 17.3 0.4 0.0035 16.8 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3279) zf-CHY PF05495.7 gi|327311702|ref|YP_004338599.1| - 0.0027 17.8 2.3 0.0027 17.8 1.6 2.0 1 1 1 2 2 2 1 CHY zinc finger Prok-RING_1 PF14446.1 gi|327311702|ref|YP_004338599.1| - 0.0035 17.0 7.1 0.56 9.9 0.0 3.6 4 0 0 4 4 4 1 Prokaryotic RING finger family 1 HNH PF01844.18 gi|327311702|ref|YP_004338599.1| - 0.0043 16.9 9.7 1.3 8.9 0.1 3.5 4 0 0 4 4 3 1 HNH endonuclease DUF2175 PF09943.4 gi|327311702|ref|YP_004338599.1| - 0.0097 15.9 4.9 0.086 12.9 0.1 3.0 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2175) C1_2 PF03107.11 gi|327311702|ref|YP_004338599.1| - 0.012 15.7 11.7 0.42 10.7 0.2 3.9 3 1 0 3 3 3 0 C1 domain zf-C2H2_6 PF13912.1 gi|327311702|ref|YP_004338599.1| - 0.019 14.8 0.1 0.019 14.8 0.1 3.7 5 0 0 5 5 3 0 C2H2-type zinc finger zf-TFIIIC PF12660.2 gi|327311702|ref|YP_004338599.1| - 0.023 14.5 3.4 7.7 6.4 0.1 3.4 1 1 1 2 2 2 0 Putative zinc-finger of transcription factor IIIC complex zf-HIT PF04438.11 gi|327311702|ref|YP_004338599.1| - 0.028 14.0 10.7 2.2 7.9 0.2 3.9 4 0 0 4 4 4 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|327311702|ref|YP_004338599.1| - 0.037 13.5 8.3 2.1 7.8 0.5 3.3 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|327311702|ref|YP_004338599.1| - 0.038 13.4 3.2 6.3 6.4 0.4 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|327311702|ref|YP_004338599.1| - 0.039 13.7 5.2 0.97 9.2 0.4 2.4 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|327311702|ref|YP_004338599.1| - 0.046 13.5 5.1 3.5 7.5 3.6 2.4 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|327311702|ref|YP_004338599.1| - 0.056 13.3 1.1 1.3 8.9 0.0 2.3 1 1 0 2 2 2 0 Ribosomal L37ae protein family zf-TRAF PF02176.13 gi|327311702|ref|YP_004338599.1| - 0.072 13.4 1.9 5.5 7.4 0.1 2.7 3 0 0 3 3 2 0 TRAF-type zinc finger zf-C2H2_2 PF12756.2 gi|327311702|ref|YP_004338599.1| - 0.076 13.1 6.9 13 5.9 0.0 3.6 1 1 1 2 2 2 0 C2H2 type zinc-finger (2 copies) PHF5 PF03660.9 gi|327311702|ref|YP_004338599.1| - 0.097 12.7 5.7 2.4 8.2 0.3 2.2 1 1 0 1 1 1 0 PHF5-like protein RRN7 PF11781.3 gi|327311702|ref|YP_004338599.1| - 0.099 12.1 8.0 2.5 7.6 0.1 3.6 4 0 0 4 4 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 PRP21_like_P PF12230.3 gi|327311702|ref|YP_004338599.1| - 0.1 12.1 0.2 6.4 6.2 0.1 2.2 1 1 1 2 2 2 0 Pre-mRNA splicing factor PRP21 like protein zf-H2C2_2 PF13465.1 gi|327311702|ref|YP_004338599.1| - 0.12 12.7 0.0 0.12 12.7 0.0 4.0 5 0 0 5 5 3 0 Zinc-finger double domain DUF2318 PF10080.4 gi|327311702|ref|YP_004338599.1| - 0.13 12.0 8.2 0.18 11.6 0.6 2.7 1 1 2 3 3 3 0 Predicted membrane protein (DUF2318) DUF329 PF03884.9 gi|327311702|ref|YP_004338599.1| - 0.14 11.7 0.5 5.4 6.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF329) zf-C2H2_jaz PF12171.3 gi|327311702|ref|YP_004338599.1| - 0.15 12.2 0.0 0.15 12.2 0.0 4.3 4 1 0 4 4 4 0 Zinc-finger double-stranded RNA-binding GFA PF04828.9 gi|327311702|ref|YP_004338599.1| - 0.23 11.4 6.1 2.2 8.3 0.2 2.8 1 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-nanos PF05741.8 gi|327311702|ref|YP_004338599.1| - 0.27 11.2 7.9 7.9 6.5 0.1 4.1 4 0 0 4 4 4 0 Nanos RNA binding domain Endonuclease_7 PF02945.10 gi|327311702|ref|YP_004338599.1| - 0.27 10.9 7.2 4.4 7.0 5.3 2.5 1 1 1 2 2 2 0 Recombination endonuclease VII RNHCP PF12647.2 gi|327311702|ref|YP_004338599.1| - 0.29 10.9 2.4 8.6 6.2 0.0 2.8 3 0 0 3 3 3 0 RNHCP domain zf-trcl PF13451.1 gi|327311702|ref|YP_004338599.1| - 0.3 10.7 2.6 5.6 6.6 0.1 2.3 2 0 0 2 2 2 0 Probable zinc-binding domain Desulfoferrod_N PF06397.7 gi|327311702|ref|YP_004338599.1| - 0.37 10.2 0.1 0.37 10.2 0.0 3.0 4 0 0 4 4 2 0 Desulfoferrodoxin, N-terminal domain zf-C3HC4_3 PF13920.1 gi|327311702|ref|YP_004338599.1| - 0.53 9.9 7.1 38 4.0 3.5 3.6 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.7 gi|327311702|ref|YP_004338599.1| - 0.65 9.3 9.0 4.5 6.6 0.8 3.3 2 1 1 3 3 3 0 TFIIB zinc-binding C1_4 PF07975.7 gi|327311702|ref|YP_004338599.1| - 0.89 9.6 3.7 6.9 6.7 0.2 2.3 2 0 0 2 2 2 0 TFIIH C1-like domain NOB1_Zn_bind PF08772.6 gi|327311702|ref|YP_004338599.1| - 1.1 9.0 4.1 0.44 10.4 0.4 2.2 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-rbx1 PF12678.2 gi|327311702|ref|YP_004338599.1| - 1.5 9.0 7.4 85 3.3 5.1 2.9 1 1 0 1 1 1 0 RING-H2 zinc finger zf-UBP PF02148.14 gi|327311702|ref|YP_004338599.1| - 1.9 8.6 8.2 21 5.3 5.7 2.6 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein Zn-ribbon_8 PF09723.5 gi|327311702|ref|YP_004338599.1| - 3.4 7.6 9.2 15 5.6 0.1 3.3 3 1 0 3 3 2 0 Zinc ribbon domain zf-met PF12874.2 gi|327311702|ref|YP_004338599.1| - 3.6 7.9 0.0 3.6 7.9 0.0 4.4 5 1 0 5 5 3 0 Zinc-finger of C2H2 type zf-C2HC_2 PF13913.1 gi|327311702|ref|YP_004338599.1| - 3.7 7.3 7.2 1.9 8.2 0.0 3.2 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf-ribbon_3 PF13248.1 gi|327311702|ref|YP_004338599.1| - 4.2 6.6 6.4 24 4.2 0.1 3.0 2 1 1 3 3 3 0 zinc-ribbon domain Gin PF10764.4 gi|327311702|ref|YP_004338599.1| - 4.7 7.0 9.2 23 4.7 0.1 3.3 3 1 0 3 3 3 0 Inhibitor of sigma-G Gin C1_3 PF07649.7 gi|327311702|ref|YP_004338599.1| - 5.9 7.0 10.9 2.9 7.9 1.4 3.0 3 0 0 3 3 3 0 C1-like domain DUF2256 PF10013.4 gi|327311702|ref|YP_004338599.1| - 6.6 6.5 8.9 9.8 6.0 0.0 3.3 3 1 1 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-RING_5 PF14634.1 gi|327311702|ref|YP_004338599.1| - 9.8 6.0 8.9 52 3.6 1.3 3.4 2 2 2 4 4 4 0 zinc-RING finger domain DUF46 PF01864.12 gi|327311703|ref|YP_004338600.1| - 4e-38 131.0 0.4 8e-38 130.0 0.3 1.4 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|327311703|ref|YP_004338600.1| - 0.0063 16.1 3.0 0.0063 16.1 2.1 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family MNHE PF01899.11 gi|327311703|ref|YP_004338600.1| - 0.0075 15.9 2.1 0.015 14.9 0.3 1.9 1 1 1 2 2 2 1 Na+/H+ ion antiporter subunit ATP_synt_I PF03899.10 gi|327311703|ref|YP_004338600.1| - 0.68 10.1 3.5 0.22 11.7 0.2 1.8 2 0 0 2 2 2 0 ATP synthase I chain ATP-synt_F PF01990.12 gi|327311704|ref|YP_004338601.1| - 4.1e-09 36.7 0.0 4.9e-09 36.4 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit DUF4391 PF14335.1 gi|327311704|ref|YP_004338601.1| - 0.043 13.1 0.1 0.045 13.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4391) CK2S PF15011.1 gi|327311704|ref|YP_004338601.1| - 0.1 12.3 0.2 0.15 11.8 0.2 1.2 1 0 0 1 1 1 0 Casein Kinase 2 substrate vATP-synt_E PF01991.13 gi|327311705|ref|YP_004338602.1| - 4.2e-10 39.2 10.4 1.5e-09 37.4 7.0 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Mitofilin PF09731.4 gi|327311705|ref|YP_004338602.1| - 0.0023 16.6 6.6 0.0033 16.1 4.6 1.2 1 0 0 1 1 1 1 Mitochondrial inner membrane protein HAUS4 PF14735.1 gi|327311705|ref|YP_004338602.1| - 0.0061 15.8 4.0 0.0089 15.3 2.8 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 4 ATP-synt_B PF00430.13 gi|327311705|ref|YP_004338602.1| - 0.54 10.0 7.6 0.72 9.6 4.3 1.9 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) G10 PF01125.12 gi|327311705|ref|YP_004338602.1| - 0.57 9.7 2.5 0.98 8.9 1.7 1.4 1 1 0 1 1 1 0 G10 protein Orbi_VP5 PF00901.12 gi|327311705|ref|YP_004338602.1| - 0.91 7.6 6.7 0.79 7.8 2.8 1.9 1 1 1 2 2 2 0 Orbivirus outer capsid protein VP5 ATP-synt_ab PF00006.20 gi|327311706|ref|YP_004338603.1| - 2.4e-81 272.3 0.0 3.4e-81 271.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|327311706|ref|YP_004338603.1| - 6.9e-13 49.0 0.5 1.1e-12 48.4 0.3 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|327311706|ref|YP_004338603.1| - 3.2e-12 46.4 0.1 7.5e-12 45.2 0.1 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|327311706|ref|YP_004338603.1| - 0.042 13.9 0.0 0.1 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.17 gi|327311706|ref|YP_004338603.1| - 0.055 13.5 0.0 7.6 6.6 0.0 2.5 2 0 0 2 2 2 0 Peptidase family M23 RNA_pol_Rpb5_C PF01191.14 gi|327311707|ref|YP_004338604.1| - 1.6e-23 82.0 0.0 1.7e-23 81.9 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.23 gi|327311708|ref|YP_004338605.1| - 6e-130 433.4 0.0 8.2e-130 432.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|327311708|ref|YP_004338605.1| - 4e-52 176.1 0.0 5.5e-52 175.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_3 PF04565.11 gi|327311708|ref|YP_004338605.1| - 2e-26 91.5 0.0 4.2e-26 90.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.15 gi|327311708|ref|YP_004338605.1| - 6e-25 87.3 0.0 1.2e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.9 gi|327311708|ref|YP_004338605.1| - 2.7e-24 85.6 0.0 5.5e-24 84.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.8 gi|327311708|ref|YP_004338605.1| - 7.1e-22 76.9 0.4 1.9e-21 75.6 0.3 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|327311708|ref|YP_004338605.1| - 5.2e-14 51.9 0.4 1.1e-13 50.9 0.3 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.7 gi|327311709|ref|YP_004338606.1| - 2.3e-85 286.8 0.0 2e-84 283.7 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|327311709|ref|YP_004338606.1| - 9.6e-69 230.5 0.0 1.7e-68 229.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|327311709|ref|YP_004338606.1| - 2.4e-30 105.3 0.0 4.2e-30 104.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|327311709|ref|YP_004338606.1| - 1.3e-26 92.4 0.0 2.3e-26 91.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|327311709|ref|YP_004338606.1| - 4.2e-26 91.8 0.1 7.5e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.1 gi|327311709|ref|YP_004338606.1| - 0.00065 18.8 3.4 0.47 9.7 0.0 2.9 3 0 0 3 3 3 2 zinc-ribbon domain CpXC PF14353.1 gi|327311709|ref|YP_004338606.1| - 0.0065 16.4 1.5 0.39 10.6 0.0 3.3 4 0 0 4 4 3 1 CpXC protein zinc_ribbon_2 PF13240.1 gi|327311709|ref|YP_004338606.1| - 0.072 12.6 8.4 3.3 7.2 0.3 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|327311709|ref|YP_004338606.1| - 0.26 11.2 3.8 15 5.6 0.1 3.3 3 0 0 3 3 3 0 Zinc ribbon domain DUF164 PF02591.10 gi|327311709|ref|YP_004338606.1| - 0.33 10.7 5.5 5.5 6.8 0.1 2.8 3 0 0 3 3 2 0 Putative zinc ribbon domain Nudix_N_2 PF14803.1 gi|327311709|ref|YP_004338606.1| - 0.35 10.5 7.1 5.7 6.7 0.1 3.4 3 0 0 3 3 3 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|327311709|ref|YP_004338606.1| - 0.7 9.9 14.7 1.4 9.0 0.0 4.3 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|327311709|ref|YP_004338606.1| - 0.72 9.7 6.0 42 4.0 4.2 2.5 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|327311709|ref|YP_004338606.1| - 0.74 9.5 6.2 2.2 8.0 0.1 2.7 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Auto_anti-p27 PF06677.7 gi|327311709|ref|YP_004338606.1| - 2.4 7.9 6.0 1.1 9.0 0.0 2.9 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_5 PF13719.1 gi|327311709|ref|YP_004338606.1| - 2.5 7.7 6.5 14 5.4 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|327311709|ref|YP_004338606.1| - 4.4 7.0 6.8 17 5.2 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|327311710|ref|YP_004338607.1| - 4.4e-46 157.3 0.0 6e-46 156.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HMA PF00403.21 gi|327311710|ref|YP_004338607.1| - 0.01 15.9 2.0 4 7.6 0.0 4.0 2 1 2 4 4 4 0 Heavy-metal-associated domain DUF211 PF02680.9 gi|327311710|ref|YP_004338607.1| - 0.045 13.5 3.9 1.4 8.7 0.0 2.9 1 1 0 2 2 2 0 Uncharacterized ArCR, COG1888 Ribosomal_L7Ae PF01248.21 gi|327311711|ref|YP_004338608.1| - 2.8e-15 55.5 0.0 3.4e-15 55.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|327311712|ref|YP_004338609.1| - 4.5e-17 61.3 0.8 9.6e-12 44.3 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|327311712|ref|YP_004338609.1| - 3.4e-12 45.9 2.0 9.4e-12 44.5 0.3 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|327311712|ref|YP_004338609.1| - 1.9e-05 24.1 0.2 0.01 15.4 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|327311712|ref|YP_004338609.1| - 8.1e-05 22.1 3.0 0.035 13.7 0.3 2.7 2 1 1 3 3 3 2 KH domain KH_3 PF13014.1 gi|327311712|ref|YP_004338609.1| - 8.3 6.1 7.1 16 5.2 0.1 3.0 3 0 0 3 3 3 0 KH domain Ribosom_S12_S23 PF00164.20 gi|327311713|ref|YP_004338610.1| - 3.6e-35 120.0 0.4 4.2e-35 119.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 RNA_pol_A_bac PF01000.21 gi|327311714|ref|YP_004338611.1| - 8e-29 100.0 0.0 1.3e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|327311714|ref|YP_004338611.1| - 2.5e-10 39.3 0.0 3e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18e PF00828.14 gi|327311715|ref|YP_004338612.1| - 2.6e-11 43.9 0.3 3.2e-11 43.7 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|327311716|ref|YP_004338613.1| - 5.2e-26 91.2 0.1 7.5e-26 90.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L13 potato_inhibit PF00280.13 gi|327311716|ref|YP_004338613.1| - 0.087 12.9 0.2 0.2 11.8 0.0 1.6 2 0 0 2 2 2 0 Potato inhibitor I family Ribosomal_S9 PF00380.14 gi|327311717|ref|YP_004338614.1| - 1.2e-33 115.9 0.0 1.4e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|327311718|ref|YP_004338615.1| - 6.4e-29 99.7 0.1 7.1e-29 99.6 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|327311718|ref|YP_004338615.1| - 0.094 12.8 0.1 0.18 11.8 0.1 1.5 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) LSM PF01423.17 gi|327311719|ref|YP_004338616.1| - 1.6e-16 59.6 0.7 1.9e-16 59.3 0.5 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|327311719|ref|YP_004338616.1| - 0.051 13.5 0.1 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain AdoMet_Synthase PF01941.14 gi|327311720|ref|YP_004338617.1| - 2.6e-172 572.8 5.0 2.9e-172 572.6 3.5 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|327311720|ref|YP_004338617.1| - 0.065 13.4 0.1 0.63 10.3 0.0 2.5 3 1 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain DUF460 PF04312.8 gi|327311721|ref|YP_004338618.1| - 2.8e-45 153.2 0.6 6.4e-45 152.0 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) GAS PF13851.1 gi|327311721|ref|YP_004338618.1| - 0.0023 17.1 4.0 0.0076 15.4 2.8 1.9 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Myosin_tail_1 PF01576.14 gi|327311721|ref|YP_004338618.1| - 0.0041 14.9 2.7 0.0091 13.7 1.9 1.5 1 0 0 1 1 1 1 Myosin tail Seryl_tRNA_N PF02403.17 gi|327311721|ref|YP_004338618.1| - 0.0054 16.7 2.9 0.0054 16.7 2.0 2.7 3 0 0 3 3 2 1 Seryl-tRNA synthetase N-terminal domain MAM33 PF02330.11 gi|327311721|ref|YP_004338618.1| - 0.0076 16.0 0.2 0.13 11.9 0.0 2.3 2 0 0 2 2 2 1 Mitochondrial glycoprotein Apolipoprotein PF01442.13 gi|327311721|ref|YP_004338618.1| - 0.0093 15.4 0.9 0.0093 15.4 0.6 2.3 3 0 0 3 3 3 1 Apolipoprotein A1/A4/E domain ADIP PF11559.3 gi|327311721|ref|YP_004338618.1| - 0.012 15.4 2.9 0.029 14.2 2.0 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding CALCOCO1 PF07888.6 gi|327311721|ref|YP_004338618.1| - 0.022 13.0 7.1 0.049 11.9 4.9 1.6 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like TBPIP PF07106.8 gi|327311721|ref|YP_004338618.1| - 0.039 13.5 2.6 0.075 12.5 1.0 2.0 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3086 PF11285.3 gi|327311721|ref|YP_004338618.1| - 0.052 12.3 0.3 0.097 11.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) NanE PF04131.9 gi|327311721|ref|YP_004338618.1| - 0.059 12.3 0.0 0.18 10.7 0.0 1.8 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Reo_sigmaC PF04582.7 gi|327311721|ref|YP_004338618.1| - 0.073 12.2 0.1 5.4 6.1 0.0 2.3 2 0 0 2 2 2 0 Reovirus sigma C capsid protein MCPsignal PF00015.16 gi|327311721|ref|YP_004338618.1| - 0.088 12.3 0.3 0.32 10.4 0.1 1.9 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain KaiC PF06745.8 gi|327311721|ref|YP_004338618.1| - 0.1 11.6 2.0 1.5 7.8 0.0 2.9 3 0 0 3 3 3 0 KaiC CENP-F_leu_zip PF10473.4 gi|327311721|ref|YP_004338618.1| - 0.15 11.9 10.4 1.4 8.8 0.8 2.8 2 1 1 3 3 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|327311721|ref|YP_004338618.1| - 0.23 11.2 0.1 1.6 8.5 0.0 2.3 3 0 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus HalX PF08663.5 gi|327311721|ref|YP_004338618.1| - 0.29 11.1 10.4 0.65 10.0 0.3 3.5 3 1 1 4 4 4 0 HalX domain IncA PF04156.9 gi|327311721|ref|YP_004338618.1| - 0.86 9.1 6.3 0.35 10.4 2.2 1.9 2 0 0 2 2 2 0 IncA protein Tropomyosin_1 PF12718.2 gi|327311721|ref|YP_004338618.1| - 0.89 9.4 9.4 0.14 11.9 3.4 2.0 2 0 0 2 2 2 0 Tropomyosin like Prefoldin_2 PF01920.15 gi|327311721|ref|YP_004338618.1| - 4.6 7.0 9.4 2.7 7.7 0.5 3.0 3 0 0 3 3 3 0 Prefoldin subunit OmpH PF03938.9 gi|327311721|ref|YP_004338618.1| - 7.8 6.4 6.6 4.3 7.2 0.9 2.3 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) RIO1 PF01163.17 gi|327311722|ref|YP_004338619.1| - 8.8e-41 139.3 0.0 1.3e-40 138.7 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|327311722|ref|YP_004338619.1| - 1.5e-19 69.8 0.1 2.8e-19 68.9 0.1 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|327311722|ref|YP_004338619.1| - 2.7e-08 33.8 7.2 0.00037 20.2 0.1 3.0 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|327311722|ref|YP_004338619.1| - 3.2e-06 26.4 0.0 6.3e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain HrcA_DNA-bdg PF03444.10 gi|327311722|ref|YP_004338619.1| - 0.027 13.8 0.0 0.081 12.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|327311722|ref|YP_004338619.1| - 0.054 13.6 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|327311722|ref|YP_004338619.1| - 0.086 13.1 0.0 0.33 11.3 0.0 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain ABC1 PF03109.11 gi|327311722|ref|YP_004338619.1| - 0.092 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 ABC1 family UPF0179 PF03684.8 gi|327311723|ref|YP_004338620.1| - 1.4e-34 118.7 0.9 1.6e-34 118.5 0.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) NifU PF01106.12 gi|327311723|ref|YP_004338620.1| - 0.63 9.8 2.9 1.3 8.8 0.4 2.6 2 1 0 2 2 2 0 NifU-like domain DUF4363 PF14276.1 gi|327311724|ref|YP_004338621.1| - 0.013 15.1 0.4 0.015 14.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) LUC7 PF03194.10 gi|327311724|ref|YP_004338621.1| - 0.015 14.8 0.7 0.016 14.7 0.5 1.1 1 0 0 1 1 1 0 LUC7 N_terminus TPR_2 PF07719.12 gi|327311724|ref|YP_004338621.1| - 0.03 14.2 3.0 0.036 13.9 0.9 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|327311724|ref|YP_004338621.1| - 0.033 14.8 0.9 0.033 14.8 0.6 1.4 2 0 0 2 2 1 0 Tetratricopeptide repeat Cytochrom_B562 PF07361.6 gi|327311724|ref|YP_004338621.1| - 0.052 13.9 0.8 0.079 13.3 0.5 1.4 1 1 0 1 1 1 0 Cytochrome b562 DUF1771 PF08590.5 gi|327311724|ref|YP_004338621.1| - 0.061 13.3 2.9 0.16 11.9 2.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1771) PPR PF01535.15 gi|327311724|ref|YP_004338621.1| - 0.085 12.8 0.5 0.5 10.4 0.1 2.2 2 0 0 2 2 2 0 PPR repeat 4HB_MCP_1 PF12729.2 gi|327311724|ref|YP_004338621.1| - 0.099 11.9 1.2 0.11 11.8 0.8 1.2 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Telomere_reg-2 PF10193.4 gi|327311724|ref|YP_004338621.1| - 0.11 12.7 0.5 0.16 12.2 0.3 1.4 1 1 1 2 2 2 0 Telomere length regulation protein PhoU PF01895.14 gi|327311724|ref|YP_004338621.1| - 0.11 12.9 0.3 0.12 12.8 0.2 1.1 1 0 0 1 1 1 0 PhoU domain Exonuc_VII_L PF02601.10 gi|327311724|ref|YP_004338621.1| - 0.16 11.1 0.4 0.19 10.8 0.3 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit IncFII_repA PF02387.10 gi|327311724|ref|YP_004338621.1| - 0.41 9.7 2.3 0.43 9.7 1.6 1.0 1 0 0 1 1 1 0 IncFII RepA protein family TPR_6 PF13174.1 gi|327311724|ref|YP_004338621.1| - 0.42 11.1 2.4 0.34 11.4 0.6 1.7 2 0 0 2 2 1 0 Tetratricopeptide repeat DUF357 PF04010.8 gi|327311725|ref|YP_004338622.1| - 6.9e-20 70.5 2.4 1.2e-19 69.7 1.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|327311725|ref|YP_004338622.1| - 7e-08 32.6 0.0 2.3e-06 27.7 0.0 2.6 2 1 0 2 2 2 1 Cytidylyltransferase Endonuclease_5 PF04493.9 gi|327311726|ref|YP_004338623.1| - 6.5e-47 159.5 0.1 9.9e-47 158.9 0.1 1.3 1 1 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|327311726|ref|YP_004338623.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF99 DUF3313 PF11769.3 gi|327311726|ref|YP_004338623.1| - 0.15 11.4 0.0 0.31 10.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3313) Proteasome PF00227.21 gi|327311727|ref|YP_004338624.1| - 3.5e-50 169.9 0.5 4.3e-50 169.6 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit PBCV_basic_adap PF08789.5 gi|327311727|ref|YP_004338624.1| - 0.034 13.8 0.1 0.083 12.5 0.0 1.6 1 0 0 1 1 1 0 PBCV-specific basic adaptor domain INCENP_N PF12178.3 gi|327311727|ref|YP_004338624.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 Chromosome passenger complex (CPC) protein INCENP N terminal Radical_SAM PF04055.16 gi|327311728|ref|YP_004338625.1| - 4.4e-18 65.9 0.1 1.9e-16 60.6 0.0 2.6 2 1 1 3 3 3 1 Radical SAM superfamily TF_Zn_Ribbon PF08271.7 gi|327311728|ref|YP_004338625.1| - 0.001 18.3 3.4 0.0025 17.1 0.6 2.5 2 1 0 2 2 2 1 TFIIB zinc-binding Fer4_12 PF13353.1 gi|327311728|ref|YP_004338625.1| - 0.0056 16.8 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.2 gi|327311728|ref|YP_004338625.1| - 0.014 15.2 0.1 0.014 15.2 0.1 2.7 3 0 0 3 3 3 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|327311728|ref|YP_004338625.1| - 0.21 11.1 3.1 0.31 10.5 0.0 2.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|327311728|ref|YP_004338625.1| - 0.36 10.8 2.6 0.54 10.2 0.0 2.5 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.1 gi|327311728|ref|YP_004338625.1| - 0.45 10.2 7.3 0.53 10.0 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal Auto_anti-p27 PF06677.7 gi|327311728|ref|YP_004338625.1| - 1.1 9.0 4.1 4.4 7.1 0.0 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) A2L_zn_ribbon PF08792.5 gi|327311728|ref|YP_004338625.1| - 6.7 6.2 8.5 26 4.4 0.1 3.6 4 0 0 4 4 4 0 A2L zinc ribbon domain PhoU_div PF01865.11 gi|327311729|ref|YP_004338626.1| - 1.8e-14 53.4 8.0 2.3e-14 53.0 5.5 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|327311729|ref|YP_004338626.1| - 0.0093 16.3 2.7 0.0093 16.3 1.9 2.8 2 1 1 3 3 3 1 PhoU domain FliG_M PF14841.1 gi|327311729|ref|YP_004338626.1| - 0.047 13.6 0.8 3 7.9 0.1 2.5 2 0 0 2 2 2 0 FliG middle domain DUF4533 PF15047.1 gi|327311729|ref|YP_004338626.1| - 0.059 12.7 0.2 0.14 11.5 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4533) Peptidase_M16 PF00675.15 gi|327311729|ref|YP_004338626.1| - 0.081 12.6 0.1 0.45 10.2 0.0 2.0 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) SapB_2 PF03489.12 gi|327311730|ref|YP_004338627.1| - 0.012 15.6 0.2 0.02 14.9 0.2 1.3 1 0 0 1 1 1 0 Saposin-like type B, region 2 SAM_adeno_trans PF01887.11 gi|327311731|ref|YP_004338628.1| - 1.6e-92 309.2 0.0 1.8e-92 309.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Succ_CoA_lig PF13607.1 gi|327311732|ref|YP_004338629.1| - 9.8e-48 161.2 2.5 8.8e-45 151.7 0.1 3.5 4 0 0 4 4 4 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|327311732|ref|YP_004338629.1| - 1.6e-22 79.8 6.8 1.7e-22 79.7 0.9 3.0 4 1 0 4 4 4 1 CoA binding domain CoA_binding PF02629.14 gi|327311732|ref|YP_004338629.1| - 3.4e-13 49.8 0.8 8.1e-13 48.7 0.5 1.7 1 0 0 1 1 1 1 CoA binding domain NAD_Gly3P_dh_N PF01210.18 gi|327311732|ref|YP_004338629.1| - 5.6e-05 22.9 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RTC PF01137.16 gi|327311733|ref|YP_004338630.1| - 1.7e-86 288.7 0.0 1.9e-86 288.5 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|327311733|ref|YP_004338630.1| - 3e-34 117.0 1.3 5.1e-34 116.3 0.9 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain NOG1 PF06858.9 gi|327311734|ref|YP_004338631.1| - 1.7e-19 69.4 0.4 4.8e-19 67.9 0.3 1.8 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|327311734|ref|YP_004338631.1| - 4e-19 68.6 0.0 7.6e-19 67.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|327311734|ref|YP_004338631.1| - 1.3e-14 53.7 0.0 2e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|327311734|ref|YP_004338631.1| - 2.5e-08 34.4 0.0 4.9e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|327311734|ref|YP_004338631.1| - 7.8e-05 22.1 0.0 0.00019 20.8 0.0 1.6 1 1 0 1 1 1 1 Ras family GTP_EFTU PF00009.22 gi|327311734|ref|YP_004338631.1| - 8.6e-05 22.0 1.0 0.011 15.1 0.7 2.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain PduV-EutP PF10662.4 gi|327311734|ref|YP_004338631.1| - 0.00013 21.4 0.1 0.00039 19.9 0.1 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|327311734|ref|YP_004338631.1| - 0.00042 19.9 0.2 0.0066 16.0 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AIG1 PF04548.11 gi|327311734|ref|YP_004338631.1| - 0.0039 16.3 0.0 0.0056 15.8 0.0 1.4 1 0 0 1 1 1 1 AIG1 family cobW PF02492.14 gi|327311734|ref|YP_004338631.1| - 0.0059 16.0 0.2 0.012 15.1 0.1 1.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|327311734|ref|YP_004338631.1| - 0.011 14.8 0.1 0.065 12.4 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Arf PF00025.16 gi|327311734|ref|YP_004338631.1| - 0.027 13.7 0.1 0.058 12.6 0.0 1.5 2 0 0 2 2 2 0 ADP-ribosylation factor family SRPRB PF09439.5 gi|327311734|ref|YP_004338631.1| - 0.055 12.6 0.0 0.13 11.4 0.0 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit PhnI PF05861.7 gi|327311735|ref|YP_004338632.1| - 0.11 10.9 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) Ribosomal_S11 PF00411.14 gi|327311736|ref|YP_004338633.1| - 1.8e-39 134.3 0.1 2.3e-39 133.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 CBS PF00571.23 gi|327311738|ref|YP_004338635.1| - 2.8e-63 209.4 18.5 6.3e-11 41.8 0.0 8.2 8 0 0 8 8 8 8 CBS domain TruB_C PF09142.6 gi|327311738|ref|YP_004338635.1| - 0.026 14.1 0.6 12 5.6 0.0 3.0 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal MMR_HSR1_C PF08438.5 gi|327311740|ref|YP_004338637.1| - 8.9e-36 122.4 0.0 1.6e-35 121.6 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|327311740|ref|YP_004338637.1| - 8.5e-17 61.1 0.0 1.9e-16 60.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|327311740|ref|YP_004338637.1| - 2.7e-07 30.3 0.0 5.8e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|327311740|ref|YP_004338637.1| - 6.8e-05 22.1 0.0 0.0002 20.6 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|327311740|ref|YP_004338637.1| - 0.055 12.9 0.0 5.6 6.3 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain HTH_23 PF13384.1 gi|327311741|ref|YP_004338638.1| - 4.5e-07 29.2 0.1 1.4e-06 27.7 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|327311741|ref|YP_004338638.1| - 3.6e-06 26.3 0.0 7e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.10 gi|327311741|ref|YP_004338638.1| - 4.2e-06 26.5 0.3 9.2e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|327311741|ref|YP_004338638.1| - 0.00011 21.3 0.0 0.00019 20.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Terminase_5 PF06056.7 gi|327311741|ref|YP_004338638.1| - 0.00017 21.0 0.0 0.00037 19.9 0.0 1.5 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|327311741|ref|YP_004338638.1| - 0.00063 19.6 0.0 0.0014 18.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|327311741|ref|YP_004338638.1| - 0.0013 18.2 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|327311741|ref|YP_004338638.1| - 0.0036 17.5 0.0 0.0058 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|327311741|ref|YP_004338638.1| - 0.0038 16.5 0.7 0.0068 15.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.1 gi|327311741|ref|YP_004338638.1| - 0.0091 16.1 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PAX PF00292.13 gi|327311741|ref|YP_004338638.1| - 0.015 14.9 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 'Paired box' domain HTH_22 PF13309.1 gi|327311741|ref|YP_004338638.1| - 0.016 14.9 0.0 0.032 13.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|327311741|ref|YP_004338638.1| - 0.016 14.9 0.0 0.038 13.7 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_IS1 PF12759.2 gi|327311741|ref|YP_004338638.1| - 0.018 14.4 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 InsA C-terminal domain HTH_29 PF13551.1 gi|327311741|ref|YP_004338638.1| - 0.019 15.1 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.1 gi|327311741|ref|YP_004338638.1| - 0.04 14.0 0.1 0.079 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_30 PF13556.1 gi|327311741|ref|YP_004338638.1| - 0.042 13.4 0.2 0.1 12.1 0.0 1.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.14 gi|327311741|ref|YP_004338638.1| - 0.064 12.8 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_10 PF04967.7 gi|327311741|ref|YP_004338638.1| - 0.089 12.3 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_ECF PF07638.6 gi|327311741|ref|YP_004338638.1| - 0.11 12.1 0.1 0.27 10.8 0.0 1.6 2 0 0 2 2 2 0 ECF sigma factor Sigma70_r4 PF04545.11 gi|327311741|ref|YP_004338638.1| - 0.12 11.7 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_1 PF01527.15 gi|327311741|ref|YP_004338638.1| - 0.13 12.2 0.1 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 Transposase AA_kinase PF00696.23 gi|327311742|ref|YP_004338639.1| - 1.1e-22 80.7 0.1 1.5e-22 80.3 0.1 1.2 1 0 0 1 1 1 1 Amino acid kinase family AlaDh_PNT_C PF01262.16 gi|327311742|ref|YP_004338639.1| - 0.04 13.4 0.4 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain MFS_1 PF07690.11 gi|327311744|ref|YP_004338641.1| - 4e-21 75.1 29.6 4e-21 75.1 20.5 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|327311744|ref|YP_004338641.1| - 0.0057 15.0 5.4 0.0057 15.0 3.8 3.0 1 1 1 2 2 2 1 MFS/sugar transport protein Sugar_tr PF00083.19 gi|327311744|ref|YP_004338641.1| - 0.046 12.3 0.2 0.046 12.3 0.2 2.8 1 1 0 3 3 3 0 Sugar (and other) transporter CBS PF00571.23 gi|327311747|ref|YP_004338644.1| - 1.7e-30 104.5 3.8 1.6e-17 62.9 0.1 2.1 2 0 0 2 2 2 2 CBS domain GAF_2 PF13185.1 gi|327311747|ref|YP_004338644.1| - 0.00067 20.1 0.2 0.7 10.3 0.1 2.1 1 1 1 2 2 2 2 GAF domain DUF4199 PF13858.1 gi|327311748|ref|YP_004338645.1| - 0.036 13.9 0.9 0.036 13.9 0.7 2.4 3 1 0 3 3 3 0 Protein of unknown function (DUF4199) DUF2182 PF09948.4 gi|327311748|ref|YP_004338645.1| - 2.5 7.9 10.8 0.069 13.0 1.0 2.5 3 0 0 3 3 3 0 Predicted metal-binding integral membrane protein (DUF2182) DUF1705 PF08019.7 gi|327311748|ref|YP_004338645.1| - 5.3 6.5 8.9 0.59 9.6 0.1 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF1705) HTH_17 PF12728.2 gi|327311749|ref|YP_004338646.1| - 1.7e-11 44.1 0.5 4.1e-11 42.9 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|327311749|ref|YP_004338646.1| - 1.7e-07 30.9 0.1 3.2e-07 30.0 0.1 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.18 gi|327311749|ref|YP_004338646.1| - 3.4e-07 29.6 0.0 7.1e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein Sigma70_r4_2 PF08281.7 gi|327311749|ref|YP_004338646.1| - 0.016 14.6 0.0 0.036 13.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|327311749|ref|YP_004338646.1| - 0.024 14.2 0.5 0.062 12.9 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain DUF3617 PF12276.3 gi|327311749|ref|YP_004338646.1| - 0.13 11.7 0.1 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3617) Sugar_tr PF00083.19 gi|327311750|ref|YP_004338647.1| - 6e-36 123.9 18.5 7.7e-36 123.6 12.8 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|327311750|ref|YP_004338647.1| - 1.3e-23 83.3 41.9 4.7e-20 71.6 17.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1 PF07690.11 gi|327311751|ref|YP_004338648.1| - 1.7e-25 89.5 49.4 3e-25 88.6 33.5 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily DUF1228 PF06779.9 gi|327311751|ref|YP_004338648.1| - 0.037 14.0 0.9 0.037 14.0 0.7 4.2 4 1 0 4 4 4 0 Protein of unknown function (DUF1228) ROK PF00480.15 gi|327311754|ref|YP_004338651.1| - 3.6e-29 101.8 0.0 6.6e-29 100.9 0.0 1.4 1 1 0 1 1 1 1 ROK family FGGY_N PF00370.16 gi|327311754|ref|YP_004338651.1| - 0.13 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain AAA_14 PF13173.1 gi|327311755|ref|YP_004338652.1| - 2.9e-19 69.2 0.0 4.3e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|327311755|ref|YP_004338652.1| - 1.8e-05 24.5 0.0 0.00058 19.6 0.0 2.3 1 1 1 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|327311755|ref|YP_004338652.1| - 8e-05 22.7 0.0 0.0018 18.3 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|327311755|ref|YP_004338652.1| - 0.0087 16.2 0.0 0.083 13.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain HTH_24 PF13412.1 gi|327311755|ref|YP_004338652.1| - 0.011 15.0 0.0 0.024 14.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.1 gi|327311755|ref|YP_004338652.1| - 0.011 14.8 0.0 0.025 13.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Mga PF08280.6 gi|327311755|ref|YP_004338652.1| - 0.018 14.8 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.1 gi|327311755|ref|YP_004338652.1| - 0.023 14.3 0.0 0.1 12.3 0.0 2.0 1 0 0 1 1 1 0 Homeodomain-like domain AAA PF00004.24 gi|327311755|ref|YP_004338652.1| - 0.052 13.7 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_AsnC-type PF13404.1 gi|327311755|ref|YP_004338652.1| - 0.061 12.8 0.0 0.17 11.4 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain AAA_10 PF12846.2 gi|327311755|ref|YP_004338652.1| - 0.072 12.5 0.0 15 4.9 0.0 2.5 2 1 1 3 3 3 0 AAA-like domain HTH_11 PF08279.7 gi|327311755|ref|YP_004338652.1| - 0.095 12.3 0.0 0.24 11.0 0.0 1.7 1 0 0 1 1 1 0 HTH domain RskA PF10099.4 gi|327311757|ref|YP_004338654.1| - 3.9 7.1 7.0 8.4 6.0 4.5 1.7 1 1 1 2 2 2 0 Anti-sigma-K factor rskA Glyco_transf_21 PF13506.1 gi|327311758|ref|YP_004338655.1| - 7.4e-19 67.6 0.0 1.6e-18 66.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.1 gi|327311758|ref|YP_004338655.1| - 2.4e-17 63.5 0.2 3.6e-17 62.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|327311758|ref|YP_004338655.1| - 2.7e-15 56.4 0.0 3.6e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 RHH_1 PF01402.16 gi|327311759|ref|YP_004338656.1| - 7.1e-07 28.8 0.2 2.3e-06 27.2 0.2 1.9 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PCP_red PF08369.5 gi|327311759|ref|YP_004338656.1| - 0.15 11.9 1.2 1.8 8.4 0.1 2.5 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit Creatininase PF02633.9 gi|327311762|ref|YP_004338659.1| - 6.7e-70 234.8 0.8 7.5e-70 234.6 0.5 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Glyco_hydro_3_C PF01915.17 gi|327311762|ref|YP_004338659.1| - 0.13 11.7 0.2 0.27 10.7 0.1 1.6 1 1 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_57 PF03065.10 gi|327311763|ref|YP_004338660.1| - 1.9e-55 188.2 0.4 2.5e-55 187.8 0.3 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Alpha-amylase_N PF02903.9 gi|327311763|ref|YP_004338660.1| - 0.036 14.0 0.0 0.19 11.6 0.0 2.1 2 0 0 2 2 2 0 Alpha amylase, N-terminal ig-like domain Polysacc_deac_1 PF01522.16 gi|327311763|ref|YP_004338660.1| - 0.078 12.6 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Polysaccharide deacetylase Phosphodiest PF01663.17 gi|327311764|ref|YP_004338661.1| - 9.7e-22 77.7 0.0 6.5e-21 75.0 0.0 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|327311764|ref|YP_004338661.1| - 2.9e-06 27.0 0.2 0.0034 17.0 0.1 2.2 2 0 0 2 2 2 2 PglZ domain RimK PF08443.6 gi|327311765|ref|YP_004338662.1| - 2.5e-36 124.9 0.0 6.5e-36 123.5 0.0 1.7 2 1 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|327311765|ref|YP_004338662.1| - 9.1e-11 41.8 0.0 1.6e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|327311765|ref|YP_004338662.1| - 1.8e-08 34.4 0.0 4.7e-08 33.0 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|327311765|ref|YP_004338662.1| - 3.6e-06 26.2 0.0 6.6e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.1 gi|327311765|ref|YP_004338662.1| - 0.028 13.5 0.0 0.84 8.6 0.0 2.4 3 0 0 3 3 3 0 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.12 gi|327311766|ref|YP_004338663.1| - 1.6e-95 318.3 0.0 7.9e-64 214.8 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|327311766|ref|YP_004338663.1| - 4.2e-36 124.3 0.5 7.7e-17 61.6 0.0 2.5 3 0 0 3 3 3 2 ATP-grasp domain CPSase_L_chain PF00289.17 gi|327311766|ref|YP_004338663.1| - 8.9e-32 109.4 0.0 1.1e-17 64.1 0.0 2.8 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|327311766|ref|YP_004338663.1| - 1.7e-30 105.2 0.0 4.8e-30 103.8 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|327311766|ref|YP_004338663.1| - 2e-24 85.9 0.0 8.3e-11 41.2 0.0 3.4 2 2 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|327311766|ref|YP_004338663.1| - 1.8e-18 66.4 0.0 6.1e-09 35.4 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|327311766|ref|YP_004338663.1| - 3.4e-14 52.7 0.0 6.5e-06 25.6 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|327311766|ref|YP_004338663.1| - 1.5e-10 40.8 0.0 0.00029 20.3 0.0 3.1 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.1 gi|327311766|ref|YP_004338663.1| - 7.3e-10 38.4 0.0 0.00028 20.1 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|327311766|ref|YP_004338663.1| - 1.6e-06 27.7 0.0 0.0059 16.1 0.0 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_2 PF08442.5 gi|327311766|ref|YP_004338663.1| - 0.0032 16.8 0.0 0.39 10.0 0.0 2.5 2 0 0 2 2 2 1 ATP-grasp domain ETF PF01012.16 gi|327311766|ref|YP_004338663.1| - 0.029 14.1 0.0 7.8 6.1 0.0 3.3 2 0 0 2 2 2 0 Electron transfer flavoprotein domain Voltage_CLC PF00654.15 gi|327311767|ref|YP_004338664.1| - 1.7e-74 250.9 43.4 1.7e-74 250.9 30.1 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel MS_channel PF00924.13 gi|327311768|ref|YP_004338665.1| - 7.1e-14 51.6 1.1 8.8e-14 51.3 0.1 1.5 1 1 0 1 1 1 1 Mechanosensitive ion channel DUF2754 PF10953.3 gi|327311768|ref|YP_004338665.1| - 0.037 14.0 0.7 0.084 12.9 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2754) DsbB PF02600.11 gi|327311768|ref|YP_004338665.1| - 0.21 11.3 7.1 0.36 10.6 4.9 1.4 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB PrgI PF12666.2 gi|327311768|ref|YP_004338665.1| - 0.62 10.2 5.4 1.5 9.0 3.7 1.6 1 0 0 1 1 1 0 PrgI family protein DUF3042 PF11240.3 gi|327311768|ref|YP_004338665.1| - 6.3 6.6 6.1 50 3.7 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3042) AA_permease_2 PF13520.1 gi|327311769|ref|YP_004338666.1| - 6.1e-36 123.8 36.9 6.9e-36 123.7 25.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|327311769|ref|YP_004338666.1| - 9.7e-28 96.7 37.6 1.7e-27 95.8 26.1 1.4 1 1 0 1 1 1 1 Amino acid permease TrkA_N PF02254.13 gi|327311770|ref|YP_004338667.1| - 5.6e-06 26.3 0.1 9.2e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|327311770|ref|YP_004338667.1| - 2.1e-05 23.9 0.0 4.4e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain Glyco_trans_4_2 PF13477.1 gi|327311770|ref|YP_004338667.1| - 0.0093 15.7 0.0 0.24 11.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like NAD_binding_7 PF13241.1 gi|327311770|ref|YP_004338667.1| - 0.011 15.9 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding IncA PF04156.9 gi|327311772|ref|YP_004338669.1| - 0.00015 21.4 0.0 0.00017 21.2 0.0 1.0 1 0 0 1 1 1 1 IncA protein Cytochrom_B_C PF00032.12 gi|327311772|ref|YP_004338669.1| - 0.0023 18.1 0.3 0.0029 17.8 0.2 1.1 1 0 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD PIG-P PF08510.7 gi|327311772|ref|YP_004338669.1| - 0.01 15.4 0.6 0.14 11.7 0.0 2.0 1 1 1 2 2 2 0 PIG-P DUF4131 PF13567.1 gi|327311772|ref|YP_004338669.1| - 0.012 15.0 0.0 0.013 14.9 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) CRPA PF05745.6 gi|327311772|ref|YP_004338669.1| - 0.097 12.4 0.2 0.094 12.5 0.1 1.2 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DPM2 PF07297.7 gi|327311772|ref|YP_004338669.1| - 0.46 10.7 3.8 0.45 10.8 2.0 1.4 1 1 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) DUF3784 PF12650.2 gi|327311772|ref|YP_004338669.1| - 0.65 9.9 4.2 0.93 9.4 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF1469 PF07332.6 gi|327311772|ref|YP_004338669.1| - 3.2 7.5 18.1 6.8 6.4 12.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Peptidase_M54 PF07998.6 gi|327311774|ref|YP_004338671.1| - 9.9e-26 90.7 0.0 1.2e-25 90.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|327311774|ref|YP_004338671.1| - 0.00021 21.0 0.0 0.00025 20.7 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.4 gi|327311774|ref|YP_004338671.1| - 0.00085 18.2 0.0 0.0012 17.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.1 gi|327311774|ref|YP_004338671.1| - 0.0064 17.0 0.0 0.0092 16.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|327311774|ref|YP_004338671.1| - 0.0075 16.3 0.0 0.0076 16.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|327311774|ref|YP_004338671.1| - 0.0088 14.5 0.3 0.013 13.9 0.2 1.2 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M43 PF05572.8 gi|327311774|ref|YP_004338671.1| - 0.023 14.2 0.1 0.031 13.8 0.1 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_5 PF13688.1 gi|327311774|ref|YP_004338671.1| - 0.04 13.8 0.0 0.047 13.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.1 gi|327311774|ref|YP_004338671.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like GDPD PF03009.12 gi|327311775|ref|YP_004338672.1| - 1.3e-30 106.7 0.0 2.5e-29 102.5 0.0 2.4 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|327311775|ref|YP_004338672.1| - 2.5e-06 27.5 0.8 8.1e-05 22.6 0.3 2.8 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.14 gi|327311775|ref|YP_004338672.1| - 0.0081 15.5 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Phosphatidylinositol-specific phospholipase C, X domain MFS_1 PF07690.11 gi|327311776|ref|YP_004338673.1| - 6.4e-18 64.5 48.7 1.1e-10 40.7 5.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Nuc_H_symport PF03825.11 gi|327311776|ref|YP_004338673.1| - 0.00013 20.8 7.1 0.00016 20.5 3.4 2.1 2 0 0 2 2 2 1 Nucleoside H+ symporter MFS_1_like PF12832.2 gi|327311776|ref|YP_004338673.1| - 0.00075 19.2 3.3 0.0008 19.1 0.1 2.8 2 1 0 2 2 2 1 MFS_1 like family MFS_2 PF13347.1 gi|327311776|ref|YP_004338673.1| - 0.2 9.9 22.0 0.025 13.0 6.4 2.3 2 1 0 2 2 2 0 MFS/sugar transport protein MobB PF03205.9 gi|327311777|ref|YP_004338674.1| - 2.3e-21 75.9 0.0 2.7e-21 75.7 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|327311777|ref|YP_004338674.1| - 0.02 14.6 0.0 0.026 14.2 0.0 1.3 1 1 0 1 1 1 0 NTPase AAA_35 PF14516.1 gi|327311777|ref|YP_004338674.1| - 0.022 13.4 0.0 0.028 13.0 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain Hom_end PF05204.9 gi|327311777|ref|YP_004338674.1| - 0.027 14.4 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 Homing endonuclease AAA_17 PF13207.1 gi|327311777|ref|YP_004338674.1| - 0.027 15.2 0.1 0.057 14.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|327311777|ref|YP_004338674.1| - 0.11 12.4 0.3 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain KaiC PF06745.8 gi|327311777|ref|YP_004338674.1| - 0.11 11.5 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 KaiC MoeA_N PF03453.12 gi|327311778|ref|YP_004338675.1| - 3.5e-36 124.0 0.1 6.1e-36 123.2 0.1 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|327311778|ref|YP_004338675.1| - 9.4e-20 70.4 0.0 1.6e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|327311778|ref|YP_004338675.1| - 0.021 14.7 0.2 0.074 13.0 0.0 2.1 2 1 0 2 2 2 0 MoeA C-terminal region (domain IV) MBF1 PF08523.5 gi|327311778|ref|YP_004338675.1| - 0.15 12.0 0.0 0.47 10.5 0.0 1.7 2 0 0 2 2 2 0 Multiprotein bridging factor 1 Fibrillarin PF01269.12 gi|327311779|ref|YP_004338676.1| - 6.1e-100 332.8 0.0 6.8e-100 332.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|327311779|ref|YP_004338676.1| - 1.6e-07 31.0 0.0 2.2e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|327311779|ref|YP_004338676.1| - 0.046 13.1 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.13 gi|327311779|ref|YP_004338676.1| - 0.068 12.2 0.0 0.092 11.8 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|327311779|ref|YP_004338676.1| - 0.14 11.7 0.0 0.29 10.7 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Nop PF01798.13 gi|327311780|ref|YP_004338677.1| - 4.5e-50 168.8 0.1 7.6e-50 168.1 0.1 1.4 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|327311780|ref|YP_004338677.1| - 7.1e-23 80.1 0.8 1.4e-22 79.2 0.1 1.9 2 0 0 2 2 2 1 NOSIC (NUC001) domain GatB_N PF02934.10 gi|327311781|ref|YP_004338678.1| - 1.1e-75 254.2 0.0 1.5e-75 253.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.9 gi|327311781|ref|YP_004338678.1| - 6.6e-10 39.0 0.0 1.4e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 GAD domain GatB_Yqey PF02637.13 gi|327311781|ref|YP_004338678.1| - 4.8e-09 36.0 0.0 3.5e-08 33.3 0.0 2.3 1 1 0 1 1 1 1 GatB domain RrnaAD PF00398.15 gi|327311782|ref|YP_004338679.1| - 2e-44 151.6 0.0 2.3e-44 151.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|327311782|ref|YP_004338679.1| - 7e-12 45.4 0.1 9.1e-12 45.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327311782|ref|YP_004338679.1| - 7.8e-10 39.3 0.0 1.1e-09 38.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327311782|ref|YP_004338679.1| - 6.6e-05 22.5 0.0 0.0001 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|327311782|ref|YP_004338679.1| - 8.5e-05 22.9 0.0 0.00017 22.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|327311782|ref|YP_004338679.1| - 0.00033 20.3 0.0 0.00047 19.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.1 gi|327311782|ref|YP_004338679.1| - 0.00068 19.3 0.0 0.00082 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|327311782|ref|YP_004338679.1| - 0.0022 18.2 0.0 0.0038 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|327311782|ref|YP_004338679.1| - 0.0027 17.1 0.0 0.0036 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|327311782|ref|YP_004338679.1| - 0.0032 16.8 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.7 gi|327311782|ref|YP_004338679.1| - 0.0089 14.9 0.0 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_4 PF02390.12 gi|327311782|ref|YP_004338679.1| - 0.015 14.3 0.0 0.022 13.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_12 PF08242.7 gi|327311782|ref|YP_004338679.1| - 0.058 13.8 0.0 0.087 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|327311782|ref|YP_004338679.1| - 0.064 12.7 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.10 gi|327311782|ref|YP_004338679.1| - 0.078 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|327311782|ref|YP_004338679.1| - 0.15 11.1 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Lactamase_B_2 PF12706.2 gi|327311783|ref|YP_004338680.1| - 1.7e-27 96.2 0.0 2.5e-27 95.6 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|327311783|ref|YP_004338680.1| - 1.1e-12 48.0 1.0 2.6e-11 43.5 0.7 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|327311783|ref|YP_004338680.1| - 0.019 14.6 0.0 0.13 11.9 0.0 2.1 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.1 gi|327311783|ref|YP_004338680.1| - 0.094 12.1 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 tRNase Z endonuclease Methyltransf_11 PF08241.7 gi|327311784|ref|YP_004338681.1| - 4.7e-13 49.4 0.0 6.9e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327311784|ref|YP_004338681.1| - 9.5e-07 29.2 0.0 1.6e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|327311784|ref|YP_004338681.1| - 1.5e-06 28.4 0.0 2.4e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|327311784|ref|YP_004338681.1| - 1.8e-05 24.3 0.0 2.5e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|327311784|ref|YP_004338681.1| - 4.6e-05 23.1 0.0 5.6e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327311784|ref|YP_004338681.1| - 8.2e-05 23.1 0.1 0.00011 22.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|327311784|ref|YP_004338681.1| - 0.0042 16.2 0.0 0.006 15.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|327311784|ref|YP_004338681.1| - 0.0084 16.1 0.3 0.012 15.6 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|327311784|ref|YP_004338681.1| - 0.035 13.4 0.0 0.044 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain MetW PF07021.7 gi|327311784|ref|YP_004338681.1| - 0.043 13.1 0.2 0.047 13.0 0.1 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|327311784|ref|YP_004338681.1| - 0.084 12.3 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|327311784|ref|YP_004338681.1| - 0.17 10.9 0.1 0.18 10.8 0.1 1.4 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase tRNA-synt_1b PF00579.20 gi|327311785|ref|YP_004338682.1| - 1.8e-41 142.1 0.0 3.1e-41 141.4 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF371 PF04027.8 gi|327311786|ref|YP_004338683.1| - 8.1e-34 116.1 0.0 9.3e-34 115.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) AMP-binding_C_2 PF14535.1 gi|327311786|ref|YP_004338683.1| - 0.086 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain CTP_transf_1 PF01148.15 gi|327311787|ref|YP_004338684.1| - 4.8e-05 23.1 11.7 0.00099 18.8 8.1 2.7 1 1 0 1 1 1 1 Cytidylyltransferase family DUF308 PF03729.8 gi|327311787|ref|YP_004338684.1| - 0.31 11.0 7.9 0.76 9.8 0.2 2.9 3 0 0 3 3 3 0 Short repeat of unknown function (DUF308) PaREP1 PF05942.6 gi|327311788|ref|YP_004338685.1| - 2.4e-28 98.3 2.7 3.2e-28 97.9 1.8 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family PIN PF01850.16 gi|327311789|ref|YP_004338686.1| - 3e-06 27.5 1.0 1.4e-05 25.3 0.6 1.8 1 1 1 2 2 2 1 PIN domain UPF0278 PF08745.6 gi|327311789|ref|YP_004338686.1| - 0.0007 18.9 0.1 0.0013 18.0 0.0 1.4 2 0 0 2 2 2 1 UPF0278 family PIN_2 PF10130.4 gi|327311789|ref|YP_004338686.1| - 0.012 15.5 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 PIN domain DUF4411 PF14367.1 gi|327311789|ref|YP_004338686.1| - 0.11 12.1 0.0 0.55 9.9 0.0 2.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4411) NAD_kinase PF01513.16 gi|327311790|ref|YP_004338687.1| - 3.9e-18 65.2 0.2 7e-18 64.3 0.1 1.3 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|327311790|ref|YP_004338687.1| - 0.059 12.8 0.4 0.12 11.7 0.2 1.5 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF86 PF01934.12 gi|327311791|ref|YP_004338688.1| - 9.9e-16 57.4 0.0 1.2e-15 57.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|327311792|ref|YP_004338689.1| - 0.11 12.8 0.1 0.18 12.1 0.1 1.5 1 1 0 1 1 1 0 Nucleotidyltransferase domain Mut7-C PF01927.11 gi|327311795|ref|YP_004338692.1| - 1.6e-28 99.4 0.2 2.1e-28 99.1 0.2 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain zf-ribbon_3 PF13248.1 gi|327311795|ref|YP_004338692.1| - 0.015 14.4 4.2 0.74 9.1 0.3 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327311795|ref|YP_004338692.1| - 0.016 14.6 5.2 0.51 9.8 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|327311795|ref|YP_004338692.1| - 0.065 12.9 1.3 1 9.0 0.1 2.5 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2_3 PF13878.1 gi|327311795|ref|YP_004338692.1| - 0.074 12.6 1.7 1.4 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_5 PF13719.1 gi|327311795|ref|YP_004338692.1| - 0.087 12.4 3.6 2.9 7.5 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|327311795|ref|YP_004338692.1| - 0.1 12.6 4.9 3.6 7.6 0.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|327311795|ref|YP_004338692.1| - 0.14 11.8 3.8 3.7 7.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|327311795|ref|YP_004338692.1| - 0.18 11.5 3.7 9.1 6.0 0.4 2.5 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.1 gi|327311795|ref|YP_004338692.1| - 0.33 10.1 7.6 1.5 8.0 5.3 2.1 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|327311795|ref|YP_004338692.1| - 0.33 11.0 5.4 2.6 8.1 0.4 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|327311795|ref|YP_004338692.1| - 0.37 10.1 3.6 2.3 7.6 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|327311795|ref|YP_004338692.1| - 0.38 10.5 5.7 6.1 6.7 0.2 2.7 3 0 0 3 3 3 0 PhnA Zinc-Ribbon UPF0547 PF10571.4 gi|327311795|ref|YP_004338692.1| - 0.95 9.2 4.9 9.7 5.9 3.4 2.3 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF164 PF02591.10 gi|327311795|ref|YP_004338692.1| - 1.1 9.1 4.4 4.7 7.1 2.6 2.3 2 1 0 2 2 2 0 Putative zinc ribbon domain DUF1610 PF07754.6 gi|327311795|ref|YP_004338692.1| - 1.4 9.0 6.2 2.8 8.1 0.5 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-IS66 PF13005.2 gi|327311795|ref|YP_004338692.1| - 1.9 8.4 7.2 1 9.3 0.3 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 OrfB_Zn_ribbon PF07282.6 gi|327311795|ref|YP_004338692.1| - 3.6 7.3 6.3 17 5.1 3.6 2.4 2 1 1 3 3 3 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.11 gi|327311795|ref|YP_004338692.1| - 5 6.9 10.4 3.6 7.3 1.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin PF00301.15 gi|327311795|ref|YP_004338692.1| - 8.7 6.3 9.3 25 4.8 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin FbpA PF05833.6 gi|327311796|ref|YP_004338693.1| - 1.9e-35 122.3 3.5 2.7e-35 121.8 2.4 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|327311796|ref|YP_004338693.1| - 3.6e-20 71.6 0.0 7.5e-20 70.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) CASP_C PF08172.7 gi|327311796|ref|YP_004338693.1| - 0.023 13.7 2.8 4.8 6.1 1.1 2.5 3 0 0 3 3 3 0 CASP C terminal DUF4140 PF13600.1 gi|327311796|ref|YP_004338693.1| - 0.049 14.0 8.7 3.8 7.9 2.4 3.3 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) TMF_DNA_bd PF12329.3 gi|327311796|ref|YP_004338693.1| - 0.18 11.6 17.7 0.15 11.8 3.3 2.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4226 PF10774.4 gi|327311796|ref|YP_004338693.1| - 0.56 10.2 6.8 0.16 12.0 1.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) AAA_13 PF13166.1 gi|327311796|ref|YP_004338693.1| - 0.98 7.7 10.2 1.4 7.3 7.1 1.1 1 0 0 1 1 1 0 AAA domain TMCO5 PF14992.1 gi|327311796|ref|YP_004338693.1| - 1.2 8.1 11.4 0.68 9.0 1.4 2.2 2 0 0 2 2 2 0 TMCO5 family Prefoldin_2 PF01920.15 gi|327311796|ref|YP_004338693.1| - 1.4 8.7 9.6 3.6 7.4 1.4 2.5 2 0 0 2 2 2 0 Prefoldin subunit DUF4337 PF14235.1 gi|327311796|ref|YP_004338693.1| - 1.8 8.4 12.2 3.9 7.3 2.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Prefoldin PF02996.12 gi|327311796|ref|YP_004338693.1| - 2 8.0 13.3 2.1 7.9 1.5 2.7 2 1 0 2 2 2 0 Prefoldin subunit MutS_III PF05192.13 gi|327311796|ref|YP_004338693.1| - 4.8 6.9 9.5 76 2.9 5.9 2.8 2 1 0 2 2 2 0 MutS domain III Seryl_tRNA_N PF02403.17 gi|327311796|ref|YP_004338693.1| - 5.5 7.0 16.3 1.9 8.5 3.6 3.2 3 0 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain GrpE PF01025.14 gi|327311796|ref|YP_004338693.1| - 5.9 6.4 14.0 1.6 8.2 1.7 2.6 2 0 0 2 2 2 0 GrpE AP_endonuc_2 PF01261.19 gi|327311797|ref|YP_004338694.1| - 5.1e-19 68.4 1.9 6.7e-19 68.0 0.6 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|327311797|ref|YP_004338694.1| - 0.013 14.5 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 UV-endonuclease UvdE TruD PF01142.13 gi|327311799|ref|YP_004338696.1| - 2.9e-67 226.9 0.0 4.7e-67 226.2 0.0 1.4 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF362 PF04015.7 gi|327311800|ref|YP_004338697.1| - 1.1e-10 41.3 0.0 1.6e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Ribosomal_L14 PF00238.14 gi|327311801|ref|YP_004338698.1| - 7e-36 122.6 0.1 7.9e-36 122.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e AdoHcyase PF05221.12 gi|327311802|ref|YP_004338699.1| - 8.7e-65 218.3 0.0 1.1e-64 218.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|327311802|ref|YP_004338699.1| - 1.2e-52 178.0 0.1 1.9e-52 177.3 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|327311802|ref|YP_004338699.1| - 4e-07 29.3 0.0 1.1e-06 27.8 0.0 1.9 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|327311802|ref|YP_004338699.1| - 1.8e-05 24.1 0.3 0.00018 20.8 0.1 2.4 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|327311802|ref|YP_004338699.1| - 0.021 14.4 0.5 0.04 13.4 0.3 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|327311802|ref|YP_004338699.1| - 0.048 13.6 0.1 0.25 11.3 0.0 2.1 2 0 0 2 2 2 0 TrkA-N domain YdfZ PF14001.1 gi|327311802|ref|YP_004338699.1| - 0.15 12.3 0.5 0.5 10.6 0.0 2.1 2 0 0 2 2 2 0 YdfZ protein B3_4 PF03483.12 gi|327311805|ref|YP_004338702.1| - 1.9e-21 76.3 0.0 3.6e-21 75.4 0.0 1.4 2 0 0 2 2 2 1 B3/4 domain Glyco_hydro_108 PF05838.7 gi|327311805|ref|YP_004338702.1| - 0.0028 17.7 0.2 0.0073 16.4 0.1 1.8 1 1 1 2 2 2 1 Glycosyl hydrolase 108 Hepatitis_core PF00906.15 gi|327311805|ref|YP_004338702.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Hepatitis core antigen CbiA PF01656.18 gi|327311806|ref|YP_004338703.1| - 7.2e-06 25.5 0.3 0.00018 20.9 0.2 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|327311806|ref|YP_004338703.1| - 0.00047 19.3 0.0 0.00083 18.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|327311806|ref|YP_004338703.1| - 0.00049 19.8 0.0 0.006 16.3 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF815 PF05673.8 gi|327311806|ref|YP_004338703.1| - 0.0087 15.0 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DUF87 PF01935.12 gi|327311806|ref|YP_004338703.1| - 0.015 15.1 0.1 0.037 13.8 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 T2SE PF00437.15 gi|327311806|ref|YP_004338703.1| - 0.018 13.9 0.0 0.045 12.6 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|327311806|ref|YP_004338703.1| - 0.026 15.3 0.0 0.14 13.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain Torsin PF06309.6 gi|327311806|ref|YP_004338703.1| - 0.035 13.9 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 Torsin AAA_10 PF12846.2 gi|327311806|ref|YP_004338703.1| - 0.044 13.2 0.0 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_26 PF13500.1 gi|327311806|ref|YP_004338703.1| - 0.051 13.1 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|327311806|ref|YP_004338703.1| - 0.059 12.7 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase GFO_IDH_MocA PF01408.17 gi|327311806|ref|YP_004338703.1| - 0.075 13.5 0.1 8.9 6.8 0.0 3.2 3 1 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Metallophos_2 PF12850.2 gi|327311807|ref|YP_004338704.1| - 6.1e-06 26.1 0.0 2e-05 24.4 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Ribonuc_red_lgC PF02867.10 gi|327311809|ref|YP_004338706.1| - 6.4e-137 457.3 0.0 7.8e-137 457.0 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|327311809|ref|YP_004338706.1| - 9.1e-12 44.6 0.0 1.7e-11 43.7 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|327311809|ref|YP_004338706.1| - 0.0034 17.7 0.2 0.012 16.0 0.1 2.0 1 0 0 1 1 1 1 ATP cone domain YrhC PF14143.1 gi|327311810|ref|YP_004338707.1| - 0.05 13.5 2.5 0.096 12.6 0.0 2.4 2 1 0 2 2 2 0 YrhC-like protein ABC2_membrane_3 PF12698.2 gi|327311810|ref|YP_004338707.1| - 0.74 8.7 14.0 0.87 8.5 9.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein VIT1 PF01988.14 gi|327311810|ref|YP_004338707.1| - 8.7 5.7 7.4 1.5 8.3 1.1 2.2 1 1 1 2 2 2 0 VIT family tRNA-synt_2b PF00587.20 gi|327311812|ref|YP_004338709.1| - 1.6e-32 112.4 0.0 2.5e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|327311812|ref|YP_004338709.1| - 1.1e-20 73.6 2.7 2.4e-20 72.5 1.9 1.6 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Laminin_I PF06008.9 gi|327311812|ref|YP_004338709.1| - 0.0045 16.3 0.5 0.0071 15.6 0.4 1.3 1 0 0 1 1 1 1 Laminin Domain I ALIX_LYPXL_bnd PF13949.1 gi|327311812|ref|YP_004338709.1| - 0.016 14.1 1.8 0.026 13.4 1.2 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Transposase_22 PF02994.9 gi|327311812|ref|YP_004338709.1| - 0.03 12.8 1.4 0.046 12.2 1.0 1.2 1 0 0 1 1 1 0 L1 transposable element DUF904 PF06005.7 gi|327311812|ref|YP_004338709.1| - 0.043 14.1 1.5 0.1 12.9 1.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Atg14 PF10186.4 gi|327311812|ref|YP_004338709.1| - 0.053 12.4 2.0 0.086 11.7 1.4 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Mnd1 PF03962.10 gi|327311812|ref|YP_004338709.1| - 0.059 13.0 0.4 0.1 12.2 0.3 1.3 1 0 0 1 1 1 0 Mnd1 family V-SNARE PF05008.10 gi|327311812|ref|YP_004338709.1| - 0.088 12.9 1.3 0.23 11.6 0.9 1.7 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus Ax_dynein_light PF10211.4 gi|327311812|ref|YP_004338709.1| - 0.1 12.4 2.0 0.14 11.9 1.4 1.2 1 0 0 1 1 1 0 Axonemal dynein light chain IncA PF04156.9 gi|327311812|ref|YP_004338709.1| - 0.12 11.9 0.2 0.21 11.1 0.1 1.3 1 0 0 1 1 1 0 IncA protein DUF342 PF03961.8 gi|327311812|ref|YP_004338709.1| - 0.16 10.3 0.3 0.26 9.6 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) FlxA PF14282.1 gi|327311812|ref|YP_004338709.1| - 0.23 11.4 0.4 0.37 10.7 0.3 1.2 1 0 0 1 1 1 0 FlxA-like protein Cep57_MT_bd PF06657.8 gi|327311812|ref|YP_004338709.1| - 0.25 11.3 2.3 0.65 9.9 1.6 1.7 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 HDAC4_Gln PF12203.3 gi|327311812|ref|YP_004338709.1| - 0.37 10.7 3.2 0.69 9.8 2.2 1.3 1 0 0 1 1 1 0 Glutamine rich N terminal domain of histone deacetylase 4 Fmp27_WPPW PF10359.4 gi|327311812|ref|YP_004338709.1| - 0.41 9.0 1.9 0.59 8.4 1.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF4140 PF13600.1 gi|327311812|ref|YP_004338709.1| - 2.9 8.3 4.7 6.1 7.3 1.9 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) CTP_transf_2 PF01467.21 gi|327311813|ref|YP_004338710.1| - 8.3e-09 35.6 0.0 1.9e-08 34.4 0.0 1.9 1 1 1 2 2 2 1 Cytidylyltransferase ATP-sulfurylase PF01747.12 gi|327311813|ref|YP_004338710.1| - 0.011 15.0 0.0 1.9 7.7 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase DNA_RNApol_7kD PF03604.8 gi|327311814|ref|YP_004338711.1| - 7.1e-05 22.1 4.5 0.00017 21.0 3.1 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-H2C2_2 PF13465.1 gi|327311814|ref|YP_004338711.1| - 0.00071 19.7 1.6 0.28 11.5 0.0 2.1 2 0 0 2 2 2 2 Zinc-finger double domain DUF2072 PF09845.4 gi|327311814|ref|YP_004338711.1| - 0.0015 18.4 0.1 0.002 18.0 0.1 1.2 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) zf-C2H2 PF00096.21 gi|327311814|ref|YP_004338711.1| - 0.0024 18.1 3.1 0.058 13.7 0.2 2.1 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-CSL PF05207.8 gi|327311814|ref|YP_004338711.1| - 0.012 15.1 0.1 0.014 14.8 0.1 1.2 1 0 0 1 1 1 0 CSL zinc finger Zn_Tnp_IS1595 PF12760.2 gi|327311814|ref|YP_004338711.1| - 0.014 15.2 0.2 4.6 7.1 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|327311814|ref|YP_004338711.1| - 0.038 13.8 0.8 3.5 7.5 0.9 2.0 1 1 1 2 2 2 0 Double zinc ribbon zf-C2H2_4 PF13894.1 gi|327311814|ref|YP_004338711.1| - 0.039 14.2 1.6 5.1 7.6 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger C1_1 PF00130.17 gi|327311814|ref|YP_004338711.1| - 0.043 13.5 0.3 0.057 13.1 0.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.14 gi|327311814|ref|YP_004338711.1| - 0.079 12.6 0.1 0.095 12.3 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_3 PF13920.1 gi|327311814|ref|YP_004338711.1| - 0.096 12.3 1.0 0.14 11.8 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FANCL_C PF11793.3 gi|327311814|ref|YP_004338711.1| - 0.1 12.5 0.4 0.18 11.7 0.2 1.5 1 1 0 1 1 1 0 FANCL C-terminal domain zf-CHY PF05495.7 gi|327311814|ref|YP_004338711.1| - 0.11 12.6 0.1 0.13 12.4 0.0 1.1 1 0 0 1 1 1 0 CHY zinc finger zf-RING_3 PF14369.1 gi|327311814|ref|YP_004338711.1| - 0.13 12.3 1.3 0.33 11.0 1.0 1.6 1 1 1 2 2 2 0 zinc-finger zinc_ribbon_2 PF13240.1 gi|327311814|ref|YP_004338711.1| - 0.18 11.3 1.4 6 6.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Tnp_zf-ribbon_2 PF13842.1 gi|327311814|ref|YP_004338711.1| - 0.26 11.7 2.7 4.1 7.8 0.0 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Zn_ribbon_recom PF13408.1 gi|327311814|ref|YP_004338711.1| - 0.7 10.1 3.2 11 6.3 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain PyrI_C PF02748.10 gi|327311814|ref|YP_004338711.1| - 0.86 9.0 3.7 14 5.2 0.6 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Arginase PF00491.16 gi|327311815|ref|YP_004338712.1| - 9.4e-49 166.1 0.0 1.1e-48 165.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family tRNA-synt_2b PF00587.20 gi|327311816|ref|YP_004338713.1| - 1.9e-47 161.0 0.1 2.7e-47 160.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|327311816|ref|YP_004338713.1| - 2.6e-19 68.9 0.0 6.7e-19 67.6 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|327311816|ref|YP_004338713.1| - 0.0091 15.1 0.9 1.3 8.3 0.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|327311816|ref|YP_004338713.1| - 0.032 13.9 0.1 0.032 13.9 0.1 1.7 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Rad50_zn_hook PF04423.9 gi|327311816|ref|YP_004338713.1| - 0.12 11.8 0.2 9.5 5.7 0.0 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-4CXXC_R1 PF10497.4 gi|327311816|ref|YP_004338713.1| - 0.13 12.4 0.1 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger domain of monoamine-oxidase A repressor R1 zinc_ribbon_5 PF13719.1 gi|327311816|ref|YP_004338713.1| - 0.7 9.5 2.4 14 5.3 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327311816|ref|YP_004338713.1| - 5.2 6.6 6.3 5.8 6.5 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Molydop_binding PF01568.16 gi|327311817|ref|YP_004338714.1| - 2.8e-06 27.1 0.1 7.2e-05 22.5 0.0 2.1 1 1 1 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|327311817|ref|YP_004338714.1| - 0.038 13.9 0.1 0.47 10.4 0.0 2.1 1 1 1 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain HHH_7 PF14635.1 gi|327311817|ref|YP_004338714.1| - 0.086 12.9 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif tRNA_int_endo PF01974.12 gi|327311818|ref|YP_004338715.1| - 2.4e-24 84.9 0.1 5.3e-24 83.8 0.0 1.5 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|327311818|ref|YP_004338715.1| - 2e-22 78.5 2.4 3.2e-22 77.8 1.7 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|327311818|ref|YP_004338715.1| - 0.00044 19.6 0.3 0.0009 18.6 0.2 1.5 1 0 0 1 1 1 1 tRNA-splicing endonuclease subunit sen54 N-term HSP20 PF00011.16 gi|327311819|ref|YP_004338716.1| - 2e-10 40.4 0.0 2.4e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family zinc_ribbon_5 PF13719.1 gi|327311820|ref|YP_004338717.1| - 1.2e-07 31.1 2.9 0.00039 19.9 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|327311820|ref|YP_004338717.1| - 2.5e-07 30.2 2.2 0.0011 18.5 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|327311820|ref|YP_004338717.1| - 2.3e-06 27.1 4.6 0.0032 17.1 0.3 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.11 gi|327311820|ref|YP_004338717.1| - 3.3e-05 23.4 0.2 5.4e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit CpXC PF14353.1 gi|327311820|ref|YP_004338717.1| - 3.5e-05 23.7 0.3 0.21 11.5 0.1 2.0 2 0 0 2 2 2 2 CpXC protein Lar_restr_allev PF14354.1 gi|327311820|ref|YP_004338717.1| - 0.00058 20.1 0.3 0.00058 20.1 0.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.7 gi|327311820|ref|YP_004338717.1| - 0.00068 19.3 1.0 0.2 11.4 0.0 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|327311820|ref|YP_004338717.1| - 0.00071 18.6 5.3 0.0036 16.4 3.6 1.9 1 1 0 1 1 1 1 zinc-ribbon domain zf-ISL3 PF14690.1 gi|327311820|ref|YP_004338717.1| - 0.0017 18.3 0.8 1.5 8.9 0.0 2.2 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|327311820|ref|YP_004338717.1| - 0.0018 17.7 6.0 0.26 10.8 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|327311820|ref|YP_004338717.1| - 0.0025 18.0 2.1 1.7 9.1 0.0 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger FYDLN_acid PF09538.5 gi|327311820|ref|YP_004338717.1| - 0.0029 18.1 0.5 1.2 9.7 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) Elf1 PF05129.8 gi|327311820|ref|YP_004338717.1| - 0.0033 17.0 0.1 0.0038 16.8 0.1 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-IS66 PF13005.2 gi|327311820|ref|YP_004338717.1| - 0.0034 17.3 0.7 0.28 11.2 0.0 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 TFIIS_C PF01096.13 gi|327311820|ref|YP_004338717.1| - 0.0046 16.5 1.7 0.5 10.0 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|327311820|ref|YP_004338717.1| - 0.0051 16.7 4.3 0.067 13.1 3.0 2.1 1 1 0 1 1 1 1 Zinc ribbon domain IBR PF01485.16 gi|327311820|ref|YP_004338717.1| - 0.0059 16.4 0.7 0.0093 15.8 0.5 1.3 1 0 0 1 1 1 1 IBR domain HypA PF01155.14 gi|327311820|ref|YP_004338717.1| - 0.0066 16.1 0.2 0.0089 15.7 0.1 1.3 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Trm112p PF03966.11 gi|327311820|ref|YP_004338717.1| - 0.0073 16.6 0.4 3.7 7.9 0.0 2.1 2 0 0 2 2 2 0 Trm112p-like protein zf-H2C2_2 PF13465.1 gi|327311820|ref|YP_004338717.1| - 0.014 15.6 4.1 1.4 9.3 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Cys_rich_CPXG PF14255.1 gi|327311820|ref|YP_004338717.1| - 0.015 15.1 2.5 0.086 12.6 1.7 1.8 1 1 0 1 1 1 0 Cysteine-rich CPXCG zf-C4_Topoisom PF01396.14 gi|327311820|ref|YP_004338717.1| - 0.017 14.6 3.0 1.6 8.2 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF329 PF03884.9 gi|327311820|ref|YP_004338717.1| - 0.017 14.6 0.3 3 7.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-RING_2 PF13639.1 gi|327311820|ref|YP_004338717.1| - 0.017 14.9 0.3 0.023 14.5 0.2 1.2 1 0 0 1 1 1 0 Ring finger domain Acetone_carb_G PF08882.6 gi|327311820|ref|YP_004338717.1| - 0.018 15.0 1.1 0.1 12.5 0.0 2.0 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit TF_Zn_Ribbon PF08271.7 gi|327311820|ref|YP_004338717.1| - 0.018 14.3 3.8 0.2 10.9 2.7 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.2 gi|327311820|ref|YP_004338717.1| - 0.019 14.7 1.8 0.074 12.8 1.3 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|327311820|ref|YP_004338717.1| - 0.021 14.3 0.8 2 7.9 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2 PF00096.21 gi|327311820|ref|YP_004338717.1| - 0.022 15.0 3.5 2.7 8.5 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-DNL PF05180.7 gi|327311820|ref|YP_004338717.1| - 0.022 14.4 0.3 0.022 14.4 0.2 1.1 1 0 0 1 1 1 0 DNL zinc finger Cys_rich_KTR PF14205.1 gi|327311820|ref|YP_004338717.1| - 0.023 14.1 0.1 0.032 13.6 0.1 1.2 1 0 0 1 1 1 0 Cysteine-rich KTR DUF1610 PF07754.6 gi|327311820|ref|YP_004338717.1| - 0.023 14.7 6.6 1.3 9.1 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1 PF03811.8 gi|327311820|ref|YP_004338717.1| - 0.024 14.1 0.9 2.9 7.4 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-HYPF PF07503.7 gi|327311820|ref|YP_004338717.1| - 0.025 13.9 3.1 0.15 11.4 0.3 2.1 2 0 0 2 2 2 0 HypF finger zf-TFIIB PF13453.1 gi|327311820|ref|YP_004338717.1| - 0.027 13.6 0.5 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF1936 PF09151.5 gi|327311820|ref|YP_004338717.1| - 0.03 13.8 4.1 1.5 8.4 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) DNA_RNApol_7kD PF03604.8 gi|327311820|ref|YP_004338717.1| - 0.031 13.7 0.7 4.9 6.7 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|327311820|ref|YP_004338717.1| - 0.032 14.0 5.1 1.7 8.5 0.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|327311820|ref|YP_004338717.1| - 0.038 13.6 1.5 0.29 10.7 0.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-AN1 PF01428.11 gi|327311820|ref|YP_004338717.1| - 0.042 13.7 2.0 4.2 7.3 0.1 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-RING_4 PF14570.1 gi|327311820|ref|YP_004338717.1| - 0.043 13.4 0.7 4.9 6.8 0.0 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-RING_UBOX PF13445.1 gi|327311820|ref|YP_004338717.1| - 0.044 13.5 0.1 0.075 12.7 0.1 1.4 1 0 0 1 1 1 0 RING-type zinc-finger DUF4379 PF14311.1 gi|327311820|ref|YP_004338717.1| - 0.053 13.3 1.7 0.22 11.3 1.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) Prok-RING_1 PF14446.1 gi|327311820|ref|YP_004338717.1| - 0.054 13.2 0.8 3.1 7.5 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 ADK_lid PF05191.9 gi|327311820|ref|YP_004338717.1| - 0.054 13.1 1.0 2.3 7.9 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid OrfB_Zn_ribbon PF07282.6 gi|327311820|ref|YP_004338717.1| - 0.059 13.0 2.0 0.44 10.2 1.3 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|327311820|ref|YP_004338717.1| - 0.073 12.9 1.7 0.24 11.3 1.1 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) A2L_zn_ribbon PF08792.5 gi|327311820|ref|YP_004338717.1| - 0.086 12.3 3.3 3.7 7.1 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-DNA_Pol PF08996.5 gi|327311820|ref|YP_004338717.1| - 0.09 12.1 0.1 0.13 11.5 0.1 1.4 1 1 0 1 1 1 0 DNA Polymerase alpha zinc finger DUF35_N PF12172.3 gi|327311820|ref|YP_004338717.1| - 0.091 12.7 1.3 2.6 8.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) T4_baseplate PF12322.3 gi|327311820|ref|YP_004338717.1| - 0.091 12.0 0.6 5.9 6.0 0.1 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein Mu-like_Com PF10122.4 gi|327311820|ref|YP_004338717.1| - 0.093 11.7 0.2 5.4 6.1 0.0 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com YhfH PF14149.1 gi|327311820|ref|YP_004338717.1| - 0.097 12.4 0.8 2.4 8.0 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein Nudix_N_2 PF14803.1 gi|327311820|ref|YP_004338717.1| - 0.14 11.8 2.0 3.3 7.4 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-CSL PF05207.8 gi|327311820|ref|YP_004338717.1| - 0.16 11.5 2.4 6.3 6.3 0.1 2.1 1 1 1 2 2 2 0 CSL zinc finger zf-tcix PF14952.1 gi|327311820|ref|YP_004338717.1| - 0.16 11.3 6.3 1.8 7.9 0.5 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Cys_rich_CPCC PF14206.1 gi|327311820|ref|YP_004338717.1| - 0.16 11.5 0.7 6.8 6.3 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPCC zf-ZPR1 PF03367.8 gi|327311820|ref|YP_004338717.1| - 0.17 11.0 1.4 1.1 8.4 1.0 1.9 1 1 0 1 1 1 0 ZPR1 zinc-finger domain zf-Nse PF11789.3 gi|327311820|ref|YP_004338717.1| - 0.17 11.4 1.1 0.3 10.6 0.8 1.5 1 1 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit DUF2318 PF10080.4 gi|327311820|ref|YP_004338717.1| - 0.19 11.5 1.0 0.32 10.7 0.7 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2318) Terminase_GpA PF05876.7 gi|327311820|ref|YP_004338717.1| - 0.21 9.8 0.9 0.42 8.8 0.6 1.6 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) Auto_anti-p27 PF06677.7 gi|327311820|ref|YP_004338717.1| - 0.22 11.3 2.3 13 5.6 0.2 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TerY-C PF15616.1 gi|327311820|ref|YP_004338717.1| - 0.23 11.3 1.8 1.8 8.4 1.3 1.9 1 1 0 1 1 1 0 TerY-C metal binding domain zf-HIT PF04438.11 gi|327311820|ref|YP_004338717.1| - 0.24 11.0 2.5 13 5.5 0.3 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF2225 PF09986.4 gi|327311820|ref|YP_004338717.1| - 0.27 10.6 2.6 1.4 8.2 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Ribosomal_S27e PF01667.12 gi|327311820|ref|YP_004338717.1| - 0.28 10.7 1.7 5 6.7 0.3 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 zinc-ribbons_6 PF07191.7 gi|327311820|ref|YP_004338717.1| - 0.31 10.8 1.6 4.5 7.1 1.1 2.0 1 1 0 1 1 1 0 zinc-ribbons DUF3797 PF12677.2 gi|327311820|ref|YP_004338717.1| - 0.36 10.4 4.5 2.6 7.7 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Rubredoxin PF00301.15 gi|327311820|ref|YP_004338717.1| - 0.37 10.6 4.7 2.7 7.9 3.1 2.1 1 1 1 2 2 2 0 Rubredoxin VP_N-CPKC PF11475.3 gi|327311820|ref|YP_004338717.1| - 0.52 9.9 2.8 14 5.3 0.1 2.3 2 0 0 2 2 2 0 Virion protein N terminal domain zf-C2H2_3 PF13878.1 gi|327311820|ref|YP_004338717.1| - 0.64 9.6 3.0 9.7 5.8 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DNA_ligase_ZBD PF03119.11 gi|327311820|ref|YP_004338717.1| - 0.83 9.4 5.2 2.1 8.1 0.3 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Ogr_Delta PF04606.7 gi|327311820|ref|YP_004338717.1| - 1 9.1 3.6 6.1 6.5 0.2 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_3 PF14369.1 gi|327311820|ref|YP_004338717.1| - 1.1 9.2 5.7 4 7.5 0.3 2.2 1 1 1 2 2 2 0 zinc-finger zf-Mss51 PF13824.1 gi|327311820|ref|YP_004338717.1| - 1.7 8.5 4.9 7.8 6.4 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2082 PF09855.4 gi|327311820|ref|YP_004338717.1| - 1.8 8.5 5.5 10 6.0 0.2 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-CCHC_5 PF14787.1 gi|327311820|ref|YP_004338717.1| - 2 7.9 4.9 12 5.4 0.5 2.2 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zf-C2HC_2 PF13913.1 gi|327311820|ref|YP_004338717.1| - 5 6.9 7.6 11 5.8 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type UbiD PF01977.11 gi|327311821|ref|YP_004338718.1| - 2.7e-95 319.2 0.0 3.4e-95 318.9 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF521 PF04412.8 gi|327311822|ref|YP_004338719.1| - 4.2e-74 249.4 0.0 5e-74 249.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.11 gi|327311823|ref|YP_004338720.1| - 1.3e-22 79.2 0.3 1.7e-22 78.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF1886 PF09171.5 gi|327311825|ref|YP_004338722.1| - 1.9e-81 272.7 0.0 2.2e-81 272.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) DNA_primase_lrg PF04104.9 gi|327311826|ref|YP_004338723.1| - 8e-33 113.7 0.0 1.6e-32 112.8 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit RPT PF13446.1 gi|327311826|ref|YP_004338723.1| - 0.045 13.1 0.1 0.11 11.9 0.1 1.7 1 0 0 1 1 1 0 A repeated domain in UCH-protein MobB PF03205.9 gi|327311827|ref|YP_004338724.1| - 7.5e-09 35.4 0.0 1.4e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|327311827|ref|YP_004338724.1| - 1.7e-06 27.6 0.0 2.8e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|327311827|ref|YP_004338724.1| - 0.00045 19.0 0.0 0.00072 18.4 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|327311827|ref|YP_004338724.1| - 0.016 14.6 0.1 0.028 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|327311827|ref|YP_004338724.1| - 0.061 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Yae1_N PF09811.4 gi|327311827|ref|YP_004338724.1| - 0.16 11.5 0.2 0.33 10.4 0.2 1.5 1 0 0 1 1 1 0 Essential protein Yae1, N terminal Metallophos PF00149.23 gi|327311828|ref|YP_004338725.1| - 1.6e-07 30.9 0.0 4.1e-07 29.6 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|327311828|ref|YP_004338725.1| - 1.2e-06 28.4 0.0 1.9e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain YppF PF14178.1 gi|327311830|ref|YP_004338727.1| - 0.11 11.9 0.6 0.3 10.6 0.1 1.8 1 1 1 2 2 2 0 YppF-like protein Acetyltransf_1 PF00583.19 gi|327311831|ref|YP_004338728.1| - 3e-16 59.1 0.1 4.3e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|327311831|ref|YP_004338728.1| - 1.7e-10 40.9 0.1 2.6e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|327311831|ref|YP_004338728.1| - 5.2e-09 36.2 0.2 8.1e-09 35.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|327311831|ref|YP_004338728.1| - 1.8e-08 34.5 0.0 2.4e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|327311831|ref|YP_004338728.1| - 4.5e-07 29.8 0.0 7.7e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|327311831|ref|YP_004338728.1| - 7.9e-07 28.7 0.1 1.1e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|327311831|ref|YP_004338728.1| - 1.9e-05 24.8 0.0 2.2e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|327311831|ref|YP_004338728.1| - 0.00017 21.1 0.0 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|327311831|ref|YP_004338728.1| - 0.0014 18.4 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_22 PF13401.1 gi|327311832|ref|YP_004338729.1| - 0.005 16.9 0.6 0.078 13.1 0.1 3.1 3 1 0 3 3 3 1 AAA domain AAA PF00004.24 gi|327311832|ref|YP_004338729.1| - 0.03 14.5 0.0 0.095 12.9 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF4119 PF13494.1 gi|327311834|ref|YP_004338731.1| - 0.029 14.3 0.8 0.51 10.3 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function, B. Theta Gene description (DUF4119) NurA PF09376.5 gi|327311834|ref|YP_004338731.1| - 0.17 11.3 8.7 0.28 10.6 0.7 2.8 2 1 0 3 3 3 0 NurA domain HALZ PF02183.13 gi|327311835|ref|YP_004338732.1| - 8.2e-07 28.6 4.2 1.8e-06 27.5 2.9 1.6 1 0 0 1 1 1 1 Homeobox associated leucine zipper DUF2051 PF09738.4 gi|327311835|ref|YP_004338732.1| - 7.4e-05 22.1 2.3 0.0001 21.6 1.6 1.2 1 0 0 1 1 1 1 Double stranded RNA binding protein (DUF2051) HAUS5 PF14817.1 gi|327311835|ref|YP_004338732.1| - 0.0006 18.4 1.1 0.00079 18.1 0.8 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 5 bZIP_Maf PF03131.12 gi|327311835|ref|YP_004338732.1| - 0.0021 18.3 2.4 0.0038 17.5 1.7 1.4 1 0 0 1 1 1 1 bZIP Maf transcription factor DUF904 PF06005.7 gi|327311835|ref|YP_004338732.1| - 0.0033 17.6 5.9 0.0062 16.8 4.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF904) Hemerythrin PF01814.18 gi|327311835|ref|YP_004338732.1| - 0.0039 17.3 1.1 0.016 15.3 0.4 1.9 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain DUF972 PF06156.8 gi|327311835|ref|YP_004338732.1| - 0.0041 17.4 0.5 0.0073 16.6 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF972) bZIP_1 PF00170.16 gi|327311835|ref|YP_004338732.1| - 0.0045 16.9 6.8 0.0075 16.2 4.7 1.4 1 0 0 1 1 1 1 bZIP transcription factor DivIC PF04977.10 gi|327311835|ref|YP_004338732.1| - 0.005 16.3 3.3 0.0096 15.3 2.3 1.4 1 0 0 1 1 1 1 Septum formation initiator DivIVA PF05103.8 gi|327311835|ref|YP_004338732.1| - 0.0056 16.7 1.6 0.01 15.8 1.1 1.4 1 0 0 1 1 1 1 DivIVA protein Prefoldin_2 PF01920.15 gi|327311835|ref|YP_004338732.1| - 0.0061 16.3 5.7 0.011 15.4 3.9 1.4 1 0 0 1 1 1 1 Prefoldin subunit Apolipoprotein PF01442.13 gi|327311835|ref|YP_004338732.1| - 0.0068 15.9 1.6 0.091 12.2 1.8 2.0 2 0 0 2 2 2 1 Apolipoprotein A1/A4/E domain DUF4200 PF13863.1 gi|327311835|ref|YP_004338732.1| - 0.0071 16.2 3.0 0.012 15.5 2.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4200) MAD PF05557.8 gi|327311835|ref|YP_004338732.1| - 0.0078 14.3 1.6 0.0099 14.0 1.1 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein NYD-SP28_assoc PF14775.1 gi|327311835|ref|YP_004338732.1| - 0.013 15.1 1.4 0.028 14.1 1.0 1.6 1 0 0 1 1 1 0 Sperm tail C-terminal domain Seryl_tRNA_N PF02403.17 gi|327311835|ref|YP_004338732.1| - 0.016 15.1 1.0 0.032 14.2 0.7 1.5 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Rab5-bind PF09311.6 gi|327311835|ref|YP_004338732.1| - 0.016 15.0 4.1 0.025 14.4 2.9 1.2 1 0 0 1 1 1 0 Rabaptin-like protein EzrA PF06160.7 gi|327311835|ref|YP_004338732.1| - 0.017 13.3 0.7 0.02 13.0 0.5 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA APG6 PF04111.7 gi|327311835|ref|YP_004338732.1| - 0.017 14.1 1.5 0.025 13.6 1.0 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 bZIP_2 PF07716.10 gi|327311835|ref|YP_004338732.1| - 0.023 14.5 8.5 0.049 13.4 5.9 1.6 1 0 0 1 1 1 0 Basic region leucine zipper TBPIP PF07106.8 gi|327311835|ref|YP_004338732.1| - 0.024 14.1 0.4 0.029 13.8 0.2 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1640 PF07798.6 gi|327311835|ref|YP_004338732.1| - 0.043 13.8 0.1 0.074 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) ADIP PF11559.3 gi|327311835|ref|YP_004338732.1| - 0.049 13.5 2.6 0.069 13.0 1.8 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Herpes_BLRF2 PF05812.7 gi|327311835|ref|YP_004338732.1| - 0.069 12.9 4.1 0.13 12.0 2.9 1.4 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein TMF_DNA_bd PF12329.3 gi|327311835|ref|YP_004338732.1| - 0.15 11.9 6.2 0.26 11.1 4.3 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding GrpE PF01025.14 gi|327311835|ref|YP_004338732.1| - 0.19 11.2 2.4 0.33 10.4 1.6 1.3 1 0 0 1 1 1 0 GrpE IncA PF04156.9 gi|327311835|ref|YP_004338732.1| - 0.25 10.9 3.4 0.37 10.3 2.3 1.3 1 0 0 1 1 1 0 IncA protein FlaC_arch PF05377.6 gi|327311835|ref|YP_004338732.1| - 0.26 11.2 4.8 1.4 8.9 2.4 2.1 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Lipoprotein_20 PF13942.1 gi|327311835|ref|YP_004338732.1| - 0.26 10.8 5.5 0.17 11.4 2.4 1.6 1 1 1 2 2 2 0 YfhG lipoprotein NUDE_C PF04880.8 gi|327311835|ref|YP_004338732.1| - 0.63 10.3 4.4 1.1 9.6 3.0 1.3 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region Radical_SAM PF04055.16 gi|327311836|ref|YP_004338733.1| - 3.8e-09 36.9 0.0 6.9e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|327311836|ref|YP_004338733.1| - 4.8e-06 26.7 0.0 7.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|327311836|ref|YP_004338733.1| - 2e-05 24.5 0.0 3.4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PucR PF07905.6 gi|327311836|ref|YP_004338733.1| - 0.068 12.7 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family DUF2748 PF10871.3 gi|327311837|ref|YP_004338734.1| - 0.049 12.0 0.1 0.052 11.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2748) DUF202 PF02656.10 gi|327311837|ref|YP_004338734.1| - 0.27 11.4 1.3 0.47 10.6 0.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) PhaG_MnhG_YufB PF03334.9 gi|327311837|ref|YP_004338734.1| - 0.33 11.0 4.1 1 9.4 0.7 2.1 2 0 0 2 2 2 0 Na+/H+ antiporter subunit TrbC PF04956.8 gi|327311837|ref|YP_004338734.1| - 0.7 9.9 6.3 30 4.7 4.4 2.1 1 1 0 1 1 1 0 TrbC/VIRB2 family RIO1 PF01163.17 gi|327311839|ref|YP_004338736.1| - 6.7e-14 51.6 0.0 8.4e-14 51.3 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|327311839|ref|YP_004338736.1| - 7.7e-10 38.9 2.1 6.1e-06 26.1 0.2 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|327311839|ref|YP_004338736.1| - 2.9e-09 36.2 0.0 5.6e-09 35.3 0.0 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|327311839|ref|YP_004338736.1| - 7.3e-06 25.3 0.0 1.1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|327311839|ref|YP_004338736.1| - 0.0017 17.6 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|327311839|ref|YP_004338736.1| - 0.044 12.8 0.0 0.1 11.6 0.0 1.6 1 1 0 1 1 1 0 Protein tyrosine kinase Radical_SAM PF04055.16 gi|327311840|ref|YP_004338737.1| - 3.9e-11 43.4 0.0 6.3e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|327311840|ref|YP_004338737.1| - 2.2e-09 37.5 0.0 4.1e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|327311840|ref|YP_004338737.1| - 7.9e-08 32.3 0.0 1.6e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF72 PF01904.13 gi|327311843|ref|YP_004338740.1| - 2.1e-36 125.8 0.0 2.6e-36 125.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF72 B5 PF03484.10 gi|327311845|ref|YP_004338742.1| - 0.0034 17.1 0.1 0.17 11.7 0.0 2.1 1 1 1 2 2 2 2 tRNA synthetase B5 domain Asparaginase_2 PF01112.13 gi|327311846|ref|YP_004338743.1| - 1.9e-74 250.2 6.6 2.1e-74 250.0 4.6 1.0 1 0 0 1 1 1 1 Asparaginase G_glu_transpept PF01019.16 gi|327311846|ref|YP_004338743.1| - 0.057 11.8 1.1 0.19 10.1 0.0 2.1 2 1 0 3 3 3 0 Gamma-glutamyltranspeptidase S4 PF01479.20 gi|327311847|ref|YP_004338744.1| - 6.5e-17 60.7 0.1 1.3e-16 59.7 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|327311847|ref|YP_004338744.1| - 0.00059 20.1 0.4 0.0017 18.7 0.2 1.7 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain DUF910 PF06014.6 gi|327311847|ref|YP_004338744.1| - 0.021 14.7 0.1 0.063 13.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF910) Ribosomal_S13 PF00416.17 gi|327311848|ref|YP_004338745.1| - 7.6e-27 93.8 0.0 9.4e-27 93.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|327311848|ref|YP_004338745.1| - 0.02 13.4 0.0 0.023 13.2 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Cob_adeno_trans PF01923.13 gi|327311849|ref|YP_004338746.1| - 1.5e-10 41.1 0.0 2.9e-10 40.1 0.0 1.4 1 1 0 1 1 1 1 Cobalamin adenosyltransferase Zip PF02535.17 gi|327311849|ref|YP_004338746.1| - 0.1 11.6 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter Porphobil_deam PF01379.15 gi|327311850|ref|YP_004338747.1| - 2.7e-64 216.0 0.0 3.2e-64 215.7 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|327311850|ref|YP_004338747.1| - 7.9e-13 48.3 0.2 1.5e-12 47.4 0.1 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain GlutR_N PF05201.10 gi|327311851|ref|YP_004338748.1| - 2e-27 95.6 0.0 6.8e-27 93.9 0.0 1.9 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|327311851|ref|YP_004338748.1| - 1.9e-18 66.8 0.0 5.1e-18 65.4 0.0 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|327311851|ref|YP_004338748.1| - 2e-10 40.9 1.7 3.3e-10 40.2 0.0 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|327311851|ref|YP_004338748.1| - 2.7e-05 24.0 0.0 6.8e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|327311851|ref|YP_004338748.1| - 0.00015 20.9 0.1 0.00025 20.1 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|327311851|ref|YP_004338748.1| - 0.00016 20.8 0.0 0.00036 19.7 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|327311851|ref|YP_004338748.1| - 0.0026 17.7 0.1 0.0093 15.9 0.1 2.0 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|327311851|ref|YP_004338748.1| - 0.031 13.7 0.1 0.054 12.9 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|327311851|ref|YP_004338748.1| - 0.043 13.1 0.0 0.082 12.2 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|327311851|ref|YP_004338748.1| - 0.13 12.8 0.4 0.85 10.1 0.0 2.3 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ThiF PF00899.16 gi|327311851|ref|YP_004338748.1| - 0.37 10.6 6.0 0.26 11.1 1.4 2.6 2 1 1 3 3 3 0 ThiF family Aminotran_3 PF00202.16 gi|327311852|ref|YP_004338749.1| - 4.6e-65 219.6 0.0 6.5e-65 219.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|327311852|ref|YP_004338749.1| - 0.078 11.9 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II TP_methylase PF00590.15 gi|327311853|ref|YP_004338750.1| - 5.5e-46 156.9 0.1 6.3e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.10 gi|327311854|ref|YP_004338751.1| - 1.6e-21 76.5 1.2 2e-21 76.2 0.8 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF1269 PF06897.7 gi|327311854|ref|YP_004338751.1| - 0.087 12.8 0.3 0.34 10.9 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) DUF364 PF04016.7 gi|327311854|ref|YP_004338751.1| - 0.098 11.9 0.2 0.2 10.9 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF364) NAD_binding_7 PF13241.1 gi|327311855|ref|YP_004338752.1| - 1.5e-21 76.6 0.2 9e-21 74.0 0.1 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding Rossmann-like PF10727.4 gi|327311855|ref|YP_004338752.1| - 4.7e-06 26.3 1.4 8.4e-06 25.5 0.3 1.8 1 1 1 2 2 2 1 Rossmann-like domain NAD_binding_10 PF13460.1 gi|327311855|ref|YP_004338752.1| - 0.00028 20.9 2.9 0.00047 20.2 2.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|327311855|ref|YP_004338752.1| - 0.00049 19.2 0.0 0.00075 18.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|327311855|ref|YP_004338752.1| - 0.0028 18.0 0.3 0.0048 17.3 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CysG_dimeriser PF10414.4 gi|327311855|ref|YP_004338752.1| - 0.0045 16.4 3.2 0.0071 15.7 1.7 1.8 2 0 0 2 2 2 1 Sirohaem synthase dimerisation region 3HCDH_N PF02737.13 gi|327311855|ref|YP_004338752.1| - 0.0062 16.2 1.7 0.019 14.6 1.1 2.1 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|327311855|ref|YP_004338752.1| - 0.0068 15.8 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|327311855|ref|YP_004338752.1| - 0.0082 15.7 1.8 0.021 14.3 1.2 1.7 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|327311855|ref|YP_004338752.1| - 0.0093 15.7 1.2 0.075 12.7 0.8 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.14 gi|327311855|ref|YP_004338752.1| - 0.028 13.4 0.4 0.042 12.8 0.3 1.2 1 0 0 1 1 1 0 FAD binding domain TrkA_N PF02254.13 gi|327311855|ref|YP_004338752.1| - 0.043 13.8 0.5 0.084 12.8 0.3 1.5 1 1 0 1 1 1 0 TrkA-N domain IlvN PF07991.7 gi|327311855|ref|YP_004338752.1| - 0.058 12.7 0.1 0.086 12.2 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Flavodoxin_1 PF00258.20 gi|327311855|ref|YP_004338752.1| - 0.063 13.2 0.1 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 Flavodoxin Thi4 PF01946.12 gi|327311855|ref|YP_004338752.1| - 0.071 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Thi4 family XdhC_C PF13478.1 gi|327311855|ref|YP_004338752.1| - 0.074 13.3 0.2 0.18 12.1 0.1 1.8 1 1 0 1 1 1 0 XdhC Rossmann domain Pyr_redox PF00070.22 gi|327311855|ref|YP_004338752.1| - 0.1 13.0 2.2 0.41 11.0 1.0 2.4 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ALAD PF00490.16 gi|327311856|ref|YP_004338753.1| - 1.1e-142 474.7 0.0 1.2e-142 474.5 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase PEP_mutase PF13714.1 gi|327311856|ref|YP_004338753.1| - 0.017 14.3 1.6 2.4 7.3 0.2 2.5 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase DUF4520 PF15016.1 gi|327311856|ref|YP_004338753.1| - 0.019 14.5 0.1 0.063 12.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4520) Ribosomal_S3_C PF00189.15 gi|327311857|ref|YP_004338754.1| - 6.8e-13 48.6 1.7 1e-12 48.0 1.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|327311857|ref|YP_004338754.1| - 1.4e-11 43.7 1.3 2.4e-11 43.0 0.3 1.8 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|327311857|ref|YP_004338754.1| - 0.00013 21.5 1.1 0.00026 20.5 0.7 1.5 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|327311857|ref|YP_004338754.1| - 0.063 12.9 0.5 0.14 11.8 0.3 1.7 1 1 0 1 1 1 0 KH domain Ribosomal_L29 PF00831.18 gi|327311858|ref|YP_004338755.1| - 1.2e-16 60.1 5.4 1.3e-16 59.9 3.7 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein Enkurin PF13864.1 gi|327311858|ref|YP_004338755.1| - 0.03 14.5 0.7 0.03 14.5 0.5 1.2 1 1 0 1 1 1 0 Calmodulin-binding UPF0086 PF01868.11 gi|327311859|ref|YP_004338756.1| - 0.011 15.2 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function UPF0086 MTHFR PF02219.12 gi|327311860|ref|YP_004338757.1| - 0.0015 17.6 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase V_ATPase_I PF01496.14 gi|327311861|ref|YP_004338758.1| - 8.9e-29 99.9 21.0 7.8e-21 73.6 7.8 2.7 2 1 0 2 2 2 2 V-type ATPase 116kDa subunit family H_PPase PF03030.11 gi|327311862|ref|YP_004338759.1| - 1.3e-242 806.9 39.8 1.5e-242 806.7 27.6 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase GTP_EFTU PF00009.22 gi|327311863|ref|YP_004338760.1| - 1.1e-21 77.1 0.0 1.6e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|327311863|ref|YP_004338760.1| - 6.3e-10 39.1 0.0 1.6e-09 37.8 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|327311863|ref|YP_004338760.1| - 1.8e-07 31.1 0.6 5.1e-07 29.7 0.4 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|327311863|ref|YP_004338760.1| - 0.0096 15.4 0.1 0.57 9.6 0.0 3.1 2 1 1 3 3 3 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU_D4 PF14578.1 gi|327311863|ref|YP_004338760.1| - 0.018 14.6 1.1 0.018 14.6 0.8 2.3 2 0 0 2 2 2 0 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|327311863|ref|YP_004338760.1| - 0.018 15.0 0.1 0.041 13.8 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase Cas_Cas4 PF01930.12 gi|327311864|ref|YP_004338761.1| - 1.3e-21 77.1 0.0 2.1e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|327311864|ref|YP_004338761.1| - 7.7e-10 38.5 0.8 6.2e-05 22.4 0.2 3.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.1 gi|327311864|ref|YP_004338761.1| - 0.00029 20.8 0.1 0.00044 20.2 0.1 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.1 gi|327311864|ref|YP_004338761.1| - 0.003 17.3 0.1 0.0056 16.4 0.0 1.5 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF91 PF01939.11 gi|327311864|ref|YP_004338761.1| - 0.0088 15.2 0.2 0.012 14.8 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF91 CCG PF02754.11 gi|327311865|ref|YP_004338762.1| - 9.2e-26 89.6 0.4 1.6e-13 50.4 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|327311865|ref|YP_004338762.1| - 2.2e-11 43.5 4.9 2.2e-11 43.5 3.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|327311865|ref|YP_004338762.1| - 6.3e-09 35.9 5.0 6.3e-09 35.9 3.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327311865|ref|YP_004338762.1| - 4.4e-08 32.8 8.0 4.4e-08 32.8 5.5 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|327311865|ref|YP_004338762.1| - 1.5e-06 28.4 6.5 0.0064 16.8 0.2 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|327311865|ref|YP_004338762.1| - 1.7e-06 28.6 4.6 4.4e-06 27.3 3.2 1.8 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|327311865|ref|YP_004338762.1| - 1.9e-06 28.0 7.2 1.6e-05 25.1 5.4 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|327311865|ref|YP_004338762.1| - 2.3e-05 23.7 16.8 0.0014 18.1 2.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|327311865|ref|YP_004338762.1| - 3.1e-05 23.7 6.1 0.017 14.9 0.7 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|327311865|ref|YP_004338762.1| - 7.3e-05 22.7 12.5 0.015 15.6 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|327311865|ref|YP_004338762.1| - 0.00038 20.1 18.5 0.0032 17.2 2.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|327311865|ref|YP_004338762.1| - 0.00075 19.2 20.8 0.002 17.9 2.1 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|327311865|ref|YP_004338762.1| - 0.0011 19.2 17.3 0.0042 17.4 10.0 2.9 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|327311865|ref|YP_004338762.1| - 0.12 12.9 24.6 0.2 12.3 2.9 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|327311865|ref|YP_004338762.1| - 0.14 11.8 4.4 3.8 7.1 0.1 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|327311865|ref|YP_004338762.1| - 1.9 9.1 7.1 11 6.6 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Glyco_tranf_2_3 PF13641.1 gi|327311866|ref|YP_004338763.1| - 3e-22 79.5 0.0 4.9e-22 78.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|327311866|ref|YP_004338763.1| - 4.3e-14 52.6 4.2 7e-14 51.9 2.9 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|327311866|ref|YP_004338763.1| - 3.7e-07 29.5 0.0 6.1e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|327311866|ref|YP_004338763.1| - 8.3e-06 25.5 0.0 0.00013 21.7 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 Cellulose_synt PF03552.9 gi|327311866|ref|YP_004338763.1| - 0.066 11.4 0.2 0.15 10.3 0.2 1.4 2 0 0 2 2 2 0 Cellulose synthase NAD_binding_5 PF07994.7 gi|327311867|ref|YP_004338764.1| - 5.1e-45 154.2 0.0 2.1e-44 152.1 0.0 1.8 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|327311867|ref|YP_004338764.1| - 2.9e-23 81.8 0.0 5.1e-23 81.0 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase DUF3659 PF12396.3 gi|327311867|ref|YP_004338764.1| - 0.058 13.0 0.9 0.11 12.1 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) PadR PF03551.9 gi|327311868|ref|YP_004338765.1| - 1.7e-08 34.0 0.1 2.4e-08 33.6 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Hydrolase_6 PF13344.1 gi|327311868|ref|YP_004338765.1| - 0.094 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Peptidase_M48 PF01435.13 gi|327311869|ref|YP_004338766.1| - 1.1e-38 133.1 0.0 1.8e-38 132.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 DUF21 PF01595.15 gi|327311869|ref|YP_004338766.1| - 4.8 6.4 18.6 0.2 10.9 8.8 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF21 AdoMet_dc PF02675.10 gi|327311871|ref|YP_004338768.1| - 1.3e-35 121.4 0.0 1.5e-35 121.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.1 gi|327311871|ref|YP_004338768.1| - 0.072 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Stage VI sporulation protein F tRNA-Thr_ED PF08915.6 gi|327311872|ref|YP_004338769.1| - 3.5e-46 156.5 0.1 6.8e-46 155.6 0.0 1.5 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|327311872|ref|YP_004338769.1| - 4.1e-22 77.9 1.0 8.8e-22 76.8 0.7 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|327311872|ref|YP_004338769.1| - 1.5e-16 60.5 0.1 3e-16 59.4 0.1 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) VIT1 PF01988.14 gi|327311873|ref|YP_004338770.1| - 0.15 11.5 1.7 0.16 11.4 1.2 1.0 1 0 0 1 1 1 0 VIT family DUF2204 PF09970.4 gi|327311874|ref|YP_004338771.1| - 2.7e-56 189.8 4.2 3.1e-56 189.7 2.9 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.1 gi|327311874|ref|YP_004338771.1| - 0.047 13.0 0.2 0.068 12.4 0.1 1.4 1 1 0 1 1 1 0 Uncharacterised nucleotidyltransferase DUF3368 PF11848.3 gi|327311874|ref|YP_004338771.1| - 0.12 11.9 0.4 6.4 6.4 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) PGK PF00162.14 gi|327311875|ref|YP_004338772.1| - 4.3e-96 321.7 0.0 5.1e-96 321.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_N PF00044.19 gi|327311876|ref|YP_004338773.1| - 3.6e-18 65.9 0.2 8.9e-17 61.4 0.2 2.5 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|327311876|ref|YP_004338773.1| - 1.1e-11 44.6 0.3 2.6e-11 43.4 0.1 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_C PF02800.15 gi|327311876|ref|YP_004338773.1| - 7.4e-11 41.7 0.0 9.9e-11 41.3 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Semialdhyde_dh PF01118.19 gi|327311876|ref|YP_004338773.1| - 0.00023 21.4 0.0 0.00058 20.1 0.0 1.7 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|327311876|ref|YP_004338773.1| - 0.00037 21.0 0.6 0.0017 18.8 0.0 2.3 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|327311876|ref|YP_004338773.1| - 0.0011 18.2 0.1 0.057 12.5 0.0 2.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|327311876|ref|YP_004338773.1| - 0.0014 19.0 0.1 0.0051 17.1 0.0 2.0 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|327311876|ref|YP_004338773.1| - 0.0098 14.9 0.1 0.015 14.3 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|327311876|ref|YP_004338773.1| - 0.052 13.9 0.4 2 8.9 0.0 3.1 2 2 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|327311876|ref|YP_004338773.1| - 0.071 13.1 0.0 0.27 11.2 0.1 2.1 2 1 0 2 2 2 0 TrkA-N domain ThiF PF00899.16 gi|327311876|ref|YP_004338773.1| - 0.072 12.9 0.0 3.4 7.4 0.0 2.5 2 0 0 2 2 2 0 ThiF family 3HCDH_N PF02737.13 gi|327311876|ref|YP_004338773.1| - 0.087 12.4 0.6 0.44 10.1 0.4 2.1 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Usp PF00582.21 gi|327311877|ref|YP_004338774.1| - 8e-17 61.7 0.1 1.2e-16 61.1 0.1 1.3 1 1 0 1 1 1 1 Universal stress protein family CbiA PF01656.18 gi|327311877|ref|YP_004338774.1| - 0.00039 19.8 0.3 0.00073 18.9 0.2 1.4 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|327311877|ref|YP_004338774.1| - 0.043 13.2 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ETF PF01012.16 gi|327311877|ref|YP_004338774.1| - 0.09 12.4 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Electron transfer flavoprotein domain SpoVG PF04026.7 gi|327311877|ref|YP_004338774.1| - 0.1 12.6 0.3 0.21 11.6 0.1 1.6 2 0 0 2 2 2 0 SpoVG P63C PF10546.4 gi|327311877|ref|YP_004338774.1| - 0.12 12.2 0.1 0.31 11.0 0.1 1.6 1 1 0 1 1 1 0 P63C domain Glyco_hydro_1 PF00232.13 gi|327311878|ref|YP_004338775.1| - 9.8e-25 86.6 0.1 3.9e-23 81.3 0.1 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 1 Glyco_hydro_42 PF02449.10 gi|327311878|ref|YP_004338775.1| - 4.6e-08 32.5 0.1 8e-08 31.7 0.1 1.3 1 0 0 1 1 1 1 Beta-galactosidase Cellulase PF00150.13 gi|327311878|ref|YP_004338775.1| - 1.7e-06 27.5 0.1 1.6e-05 24.2 0.1 1.9 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_35 PF01301.14 gi|327311878|ref|YP_004338775.1| - 0.0002 20.8 0.1 0.00052 19.4 0.1 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 35 ERCC4 PF02732.10 gi|327311879|ref|YP_004338776.1| - 8.9e-18 64.4 0.0 1.5e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 ERCC4 domain HHH PF00633.18 gi|327311879|ref|YP_004338776.1| - 0.0035 16.9 0.3 0.01 15.4 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|327311879|ref|YP_004338776.1| - 0.023 14.7 0.0 0.058 13.4 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif HHH_5 PF14520.1 gi|327311879|ref|YP_004338776.1| - 0.037 14.2 0.0 0.17 12.0 0.0 1.9 1 1 1 2 2 2 0 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|327311879|ref|YP_004338776.1| - 0.04 14.1 0.0 0.069 13.3 0.0 1.4 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold TusA PF01206.12 gi|327311879|ref|YP_004338776.1| - 0.095 12.3 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Sulfurtransferase TusA TPP_enzyme_M PF00205.17 gi|327311879|ref|YP_004338776.1| - 0.13 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Ribosomal_S17 PF00366.15 gi|327311880|ref|YP_004338777.1| - 9.1e-18 64.0 2.7 1.6e-17 63.2 1.9 1.4 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S19 PF00203.16 gi|327311881|ref|YP_004338778.1| - 3.6e-28 96.9 0.0 4.7e-28 96.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 Metal_resist PF13801.1 gi|327311881|ref|YP_004338778.1| - 0.052 13.5 0.2 0.066 13.1 0.1 1.1 1 0 0 1 1 1 0 Heavy-metal resistance CYTH PF01928.16 gi|327311882|ref|YP_004338779.1| - 0.021 14.5 0.2 0.022 14.4 0.2 1.1 1 0 0 1 1 1 0 CYTH domain B5 PF03484.10 gi|327311883|ref|YP_004338780.1| - 2.1e-11 43.4 0.3 4.5e-09 36.0 0.2 3.1 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|327311883|ref|YP_004338780.1| - 1.9e-08 33.9 0.0 3.1e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain Methyltrans_RNA PF04452.9 gi|327311884|ref|YP_004338781.1| - 0.031 13.3 0.0 0.038 13.1 0.0 1.1 1 0 0 1 1 1 0 RNA methyltransferase Flu_NS2 PF00601.14 gi|327311884|ref|YP_004338781.1| - 0.06 13.5 0.1 0.13 12.5 0.0 1.5 2 0 0 2 2 2 0 Influenza non-structural protein (NS2) PhnA_Zn_Ribbon PF08274.7 gi|327311885|ref|YP_004338782.1| - 0.00026 20.6 0.4 0.00047 19.8 0.3 1.3 1 0 0 1 1 1 1 PhnA Zinc-Ribbon zf-C4_Topoisom PF01396.14 gi|327311885|ref|YP_004338782.1| - 0.002 17.5 0.4 0.0028 17.1 0.3 1.3 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.1 gi|327311885|ref|YP_004338782.1| - 0.014 14.5 0.3 0.02 14.0 0.2 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger Lar_restr_allev PF14354.1 gi|327311885|ref|YP_004338782.1| - 0.015 15.5 0.1 0.021 15.1 0.1 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|327311885|ref|YP_004338782.1| - 0.028 13.7 0.2 0.041 13.2 0.2 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|327311885|ref|YP_004338782.1| - 0.059 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.2 gi|327311885|ref|YP_004338782.1| - 0.11 12.2 0.8 0.3 10.9 0.6 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-CSL PF05207.8 gi|327311885|ref|YP_004338782.1| - 0.31 10.5 1.8 0.9 9.0 1.2 1.7 1 1 0 1 1 1 0 CSL zinc finger zf-ISL3 PF14690.1 gi|327311885|ref|YP_004338782.1| - 1.3 9.1 4.1 21 5.2 2.9 2.4 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2514 PF10721.4 gi|327311886|ref|YP_004338783.1| - 0.074 12.7 0.6 0.6 9.7 0.2 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF2514) Archease PF01951.11 gi|327311887|ref|YP_004338784.1| - 3.1e-37 127.5 0.1 3.4e-37 127.4 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Bac_rhamnosid_N PF08531.5 gi|327311887|ref|YP_004338784.1| - 0.071 12.6 0.0 0.083 12.4 0.0 1.2 1 0 0 1 1 1 0 Alpha-L-rhamnosidase N-terminal domain OMPdecase PF00215.19 gi|327311888|ref|YP_004338785.1| - 4.7e-21 75.2 3.8 9.3e-21 74.2 2.6 1.5 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|327311888|ref|YP_004338785.1| - 1.7e-05 24.0 0.4 3.8e-05 22.8 0.2 1.6 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|327311888|ref|YP_004338785.1| - 0.00044 19.8 0.2 0.00071 19.1 0.2 1.5 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain DUF556 PF04476.8 gi|327311888|ref|YP_004338785.1| - 0.028 13.6 3.4 1.6 7.8 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF556) HMGL-like PF00682.14 gi|327311888|ref|YP_004338785.1| - 0.03 14.0 0.1 0.055 13.1 0.1 1.5 1 1 0 1 1 1 0 HMGL-like EAL PF00563.15 gi|327311888|ref|YP_004338785.1| - 0.035 13.5 0.0 2.8 7.3 0.0 2.1 1 1 1 2 2 2 0 EAL domain DeoC PF01791.4 gi|327311888|ref|YP_004338785.1| - 0.41 9.8 3.3 12 5.0 0.0 2.9 2 1 1 3 3 3 0 DeoC/LacD family aldolase AAA_18 PF13238.1 gi|327311889|ref|YP_004338786.1| - 2.4e-09 37.5 0.1 3.2e-09 37.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|327311889|ref|YP_004338786.1| - 3.1e-07 31.2 0.1 4.1e-07 30.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|327311889|ref|YP_004338786.1| - 0.00021 20.7 0.2 0.092 12.1 0.0 2.3 2 1 0 2 2 2 2 Thymidylate kinase AAA_33 PF13671.1 gi|327311889|ref|YP_004338786.1| - 0.00095 19.0 0.0 0.0017 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|327311889|ref|YP_004338786.1| - 0.027 14.4 0.0 0.047 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|327311889|ref|YP_004338786.1| - 0.034 13.2 0.1 0.083 11.9 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|327311889|ref|YP_004338786.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain SKI PF01202.17 gi|327311889|ref|YP_004338786.1| - 0.17 11.7 0.8 0.67 9.8 0.5 2.0 1 1 0 1 1 1 0 Shikimate kinase DJ-1_PfpI PF01965.19 gi|327311890|ref|YP_004338787.1| - 0.0057 16.1 0.0 0.02 14.3 0.0 1.8 1 1 0 1 1 1 1 DJ-1/PfpI family Taq-exonuc PF09281.5 gi|327311890|ref|YP_004338787.1| - 0.045 13.8 0.0 0.085 12.9 0.0 1.5 1 0 0 1 1 1 0 Taq polymerase, exonuclease Fe-ADH_2 PF13685.1 gi|327311891|ref|YP_004338788.1| - 4e-56 190.1 0.0 7.7e-56 189.1 0.0 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|327311891|ref|YP_004338788.1| - 8.2e-26 90.5 1.7 3.4e-24 85.1 1.2 2.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|327311891|ref|YP_004338788.1| - 1.3e-06 27.5 4.3 2.1e-05 23.5 0.3 3.3 2 1 0 2 2 2 1 3-dehydroquinate synthase SpoIIAA-like PF11964.3 gi|327311891|ref|YP_004338788.1| - 0.031 14.5 0.0 0.41 10.9 0.0 2.5 2 0 0 2 2 2 0 SpoIIAA-like UBA PF00627.26 gi|327311891|ref|YP_004338788.1| - 0.036 13.9 0.1 5.2 7.0 0.0 2.6 2 0 0 2 2 2 0 UBA/TS-N domain RskA PF10099.4 gi|327311892|ref|YP_004338789.1| - 0.15 11.7 2.3 0.2 11.3 1.6 1.2 1 0 0 1 1 1 0 Anti-sigma-K factor rskA Malic_M PF03949.10 gi|327311894|ref|YP_004338791.1| - 9.1e-67 225.2 0.2 1.1e-66 224.9 0.1 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|327311894|ref|YP_004338791.1| - 5.3e-24 84.7 0.2 6.2e-15 55.2 0.1 2.5 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Shikimate_DH PF01488.15 gi|327311894|ref|YP_004338791.1| - 0.013 15.5 0.0 7 6.7 0.0 2.9 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|327311894|ref|YP_004338791.1| - 0.017 14.9 1.0 0.067 13.0 0.0 2.3 2 1 0 2 2 2 0 ThiF family NMT1 PF09084.6 gi|327311894|ref|YP_004338791.1| - 0.084 12.4 0.0 0.21 11.1 0.0 1.7 1 0 0 1 1 1 0 NMT1/THI5 like TonB_2 PF13103.1 gi|327311895|ref|YP_004338792.1| - 0.077 13.0 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 TonB C terminal Citrate_synt PF00285.16 gi|327311896|ref|YP_004338793.1| - 1.1e-131 438.8 0.0 1.2e-131 438.6 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase DUF1938 PF09153.5 gi|327311896|ref|YP_004338793.1| - 0.013 15.2 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1938) Replicase PF03090.12 gi|327311896|ref|YP_004338793.1| - 0.069 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Replicase family DUF4443 PF14544.1 gi|327311897|ref|YP_004338794.1| - 1.4e-06 28.0 0.0 1.8e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) TIP49 PF06068.8 gi|327311898|ref|YP_004338795.1| - 2.2e-152 507.4 0.5 2.5e-152 507.2 0.4 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|327311898|ref|YP_004338795.1| - 8.1e-10 39.0 1.0 6.7e-07 29.5 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|327311898|ref|YP_004338795.1| - 1.1e-08 35.2 0.1 0.0012 18.9 0.0 2.7 1 1 1 2 2 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|327311898|ref|YP_004338795.1| - 5.1e-08 32.2 2.8 3.7e-06 26.1 0.0 3.3 3 1 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|327311898|ref|YP_004338795.1| - 1.1e-07 32.0 0.2 0.022 14.9 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|327311898|ref|YP_004338795.1| - 3.2e-05 23.4 0.1 7.3e-05 22.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|327311898|ref|YP_004338795.1| - 4.9e-05 23.0 0.1 0.0001 22.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|327311898|ref|YP_004338795.1| - 0.00018 22.2 0.5 0.00066 20.4 0.0 2.2 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|327311898|ref|YP_004338795.1| - 0.00019 20.8 0.0 0.00038 19.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|327311898|ref|YP_004338795.1| - 0.0002 20.3 0.0 0.00063 18.7 0.0 1.8 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain Sigma54_activat PF00158.21 gi|327311898|ref|YP_004338795.1| - 0.00043 19.8 0.2 0.0056 16.1 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_28 PF13521.1 gi|327311898|ref|YP_004338795.1| - 0.0005 20.0 0.0 0.019 14.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|327311898|ref|YP_004338795.1| - 0.0019 17.4 0.3 0.0041 16.3 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|327311898|ref|YP_004338795.1| - 0.0034 17.1 0.1 0.011 15.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|327311898|ref|YP_004338795.1| - 0.0037 17.5 0.0 0.015 15.5 0.0 2.1 3 0 0 3 3 1 1 AAA domain Zeta_toxin PF06414.7 gi|327311898|ref|YP_004338795.1| - 0.0047 16.0 0.5 0.017 14.2 0.1 2.0 2 0 0 2 2 2 1 Zeta toxin NACHT PF05729.7 gi|327311898|ref|YP_004338795.1| - 0.0052 16.4 0.0 0.012 15.2 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_33 PF13671.1 gi|327311898|ref|YP_004338795.1| - 0.0086 15.9 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|327311898|ref|YP_004338795.1| - 0.016 14.7 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|327311898|ref|YP_004338795.1| - 0.019 13.9 0.1 0.043 12.7 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|327311898|ref|YP_004338795.1| - 0.02 14.8 0.0 0.38 10.6 0.0 2.6 3 0 0 3 3 2 0 AAA domain PhoH PF02562.11 gi|327311898|ref|YP_004338795.1| - 0.025 13.8 0.1 0.05 12.8 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.10 gi|327311898|ref|YP_004338795.1| - 0.039 13.7 0.2 0.098 12.4 0.0 1.8 2 1 0 2 2 1 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|327311898|ref|YP_004338795.1| - 0.044 13.9 0.0 0.085 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|327311898|ref|YP_004338795.1| - 0.052 13.8 0.0 0.12 12.7 0.0 1.8 1 1 0 1 1 1 0 ABC transporter ATP-synt_ab PF00006.20 gi|327311898|ref|YP_004338795.1| - 0.068 12.6 0.0 0.098 12.1 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|327311898|ref|YP_004338795.1| - 0.082 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|327311898|ref|YP_004338795.1| - 0.094 12.4 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|327311898|ref|YP_004338795.1| - 0.18 11.3 1.2 0.65 9.5 0.0 2.3 3 0 0 3 3 2 0 AAA domain SecA_PP_bind PF01043.15 gi|327311898|ref|YP_004338795.1| - 0.19 12.1 1.0 0.48 10.8 0.2 2.0 2 0 0 2 2 1 0 SecA preprotein cross-linking domain DUF4064 PF13273.1 gi|327311899|ref|YP_004338796.1| - 0.018 15.1 1.6 0.018 15.1 1.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Peptidase_M50 PF02163.17 gi|327311900|ref|YP_004338797.1| - 1.7e-27 95.6 0.0 6.4e-27 93.7 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.1 gi|327311900|ref|YP_004338797.1| - 5.4e-11 42.2 0.4 0.00024 20.9 0.0 3.4 2 2 0 2 2 2 2 PDZ domain PDZ PF00595.19 gi|327311900|ref|YP_004338797.1| - 0.00073 19.6 0.0 2 8.6 0.0 3.5 4 0 0 4 4 4 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|327311900|ref|YP_004338797.1| - 0.015 15.0 0.4 3.3 7.5 0.1 2.4 2 0 0 2 2 2 0 Tricorn protease PDZ domain Antitoxin-MazE PF04014.13 gi|327311900|ref|YP_004338797.1| - 0.059 13.1 0.3 1.2e+02 2.5 0.0 4.1 4 0 0 4 4 4 0 Antidote-toxin recognition MazE DUF2208 PF09973.4 gi|327311902|ref|YP_004338799.1| - 3.5e-47 160.6 5.1 4.2e-47 160.3 3.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Ribosomal_60s PF00428.14 gi|327311903|ref|YP_004338800.1| - 3.9e-17 62.4 14.7 4.5e-17 62.2 10.2 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein Ribosomal_L38e PF01781.13 gi|327311904|ref|YP_004338801.1| - 7.6e-05 22.3 0.1 8.9e-05 22.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L38e protein family Cob_adeno_trans PF01923.13 gi|327311905|ref|YP_004338802.1| - 2.6e-18 66.3 0.0 3e-18 66.1 0.0 1.1 1 0 0 1 1 1 1 Cobalamin adenosyltransferase TPR_12 PF13424.1 gi|327311905|ref|YP_004338802.1| - 0.047 13.6 4.2 1.4 8.8 0.1 2.8 2 1 1 3 3 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|327311905|ref|YP_004338802.1| - 2.1 9.2 5.9 2.7 8.8 0.0 3.3 3 1 0 3 3 3 0 Tetratricopeptide repeat HTH_IclR PF09339.5 gi|327311906|ref|YP_004338803.1| - 9.9e-10 37.8 1.3 2.3e-09 36.6 0.9 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|327311906|ref|YP_004338803.1| - 6.5e-09 35.0 0.1 2e-08 33.4 0.0 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|327311906|ref|YP_004338803.1| - 1.9e-07 30.7 0.4 3.8e-07 29.8 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|327311906|ref|YP_004338803.1| - 5.9e-07 29.0 0.2 1.2e-06 28.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|327311906|ref|YP_004338803.1| - 6.6e-06 25.5 0.1 1.6e-05 24.3 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|327311906|ref|YP_004338803.1| - 5.6e-05 22.9 0.0 0.00011 22.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|327311906|ref|YP_004338803.1| - 0.00035 20.0 0.5 0.0016 17.9 0.1 2.0 2 0 0 2 2 2 1 LexA DNA binding domain HTH_11 PF08279.7 gi|327311906|ref|YP_004338803.1| - 0.0014 18.2 0.0 0.003 17.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|327311906|ref|YP_004338803.1| - 0.0022 18.2 0.1 0.0038 17.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_8 PF02954.14 gi|327311906|ref|YP_004338803.1| - 0.0075 15.7 1.7 0.0079 15.7 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family CENP-B_N PF04218.8 gi|327311906|ref|YP_004338803.1| - 0.0087 15.4 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain Rrf2 PF02082.15 gi|327311906|ref|YP_004338803.1| - 0.013 15.5 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.15 gi|327311906|ref|YP_004338803.1| - 0.017 14.7 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|327311906|ref|YP_004338803.1| - 0.043 13.5 0.0 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|327311906|ref|YP_004338803.1| - 0.089 12.5 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|327311906|ref|YP_004338803.1| - 0.092 12.8 0.1 0.5 10.5 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain Phosphoprotein PF00922.12 gi|327311906|ref|YP_004338803.1| - 0.095 11.9 2.1 0.13 11.4 1.5 1.2 1 0 0 1 1 1 0 Vesiculovirus phosphoprotein Sigma70_r4_2 PF08281.7 gi|327311906|ref|YP_004338803.1| - 0.098 12.1 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.1 gi|327311906|ref|YP_004338803.1| - 0.13 12.3 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HAD_2 PF13419.1 gi|327311907|ref|YP_004338804.1| - 1.7e-14 54.4 0.0 6.4e-14 52.5 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|327311907|ref|YP_004338804.1| - 4.4e-06 26.9 0.0 6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|327311907|ref|YP_004338804.1| - 0.0036 16.9 0.0 0.0057 16.3 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|327311907|ref|YP_004338804.1| - 0.019 15.4 0.0 0.12 12.7 0.0 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|327311907|ref|YP_004338804.1| - 0.043 13.7 0.1 0.16 11.9 0.1 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UbiA PF01040.13 gi|327311908|ref|YP_004338805.1| - 3e-26 92.1 28.4 4e-26 91.7 19.5 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF3285 PF11688.3 gi|327311908|ref|YP_004338805.1| - 2.4 7.8 7.8 0.96 9.1 0.6 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) Ribosomal_L22 PF00237.14 gi|327311909|ref|YP_004338806.1| - 4.6e-30 103.6 0.0 5.8e-30 103.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e FHIPEP PF00771.15 gi|327311910|ref|YP_004338807.1| - 0.0048 15.2 0.0 0.0052 15.1 0.0 1.0 1 0 0 1 1 1 1 FHIPEP family HTH_AsnC-type PF13404.1 gi|327311911|ref|YP_004338808.1| - 1.1e-06 28.0 0.2 5.1e-06 25.9 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|327311911|ref|YP_004338808.1| - 0.00014 21.1 0.0 0.51 9.7 0.0 2.7 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HGD-D PF06050.8 gi|327311911|ref|YP_004338808.1| - 0.038 12.7 0.0 0.1 11.3 0.0 1.7 1 1 1 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component PEP_mutase PF13714.1 gi|327311912|ref|YP_004338809.1| - 1.1e-63 214.6 0.8 1.3e-63 214.4 0.6 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|327311912|ref|YP_004338809.1| - 1.4e-15 56.5 0.7 2.7e-15 55.5 0.4 1.4 1 1 0 1 1 1 1 Isocitrate lyase family MmgE_PrpD PF03972.9 gi|327311913|ref|YP_004338810.1| - 7.1e-127 423.2 0.3 8.6e-127 422.9 0.2 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Iso_dh PF00180.15 gi|327311914|ref|YP_004338811.1| - 2.7e-96 322.5 0.0 3.2e-96 322.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Acetyltransf_1 PF00583.19 gi|327311915|ref|YP_004338812.1| - 2e-14 53.3 0.1 3.6e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|327311915|ref|YP_004338812.1| - 3e-11 43.3 0.0 4.4e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|327311915|ref|YP_004338812.1| - 4.6e-11 42.8 0.0 5.8e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|327311915|ref|YP_004338812.1| - 8.5e-11 42.0 0.0 9.6e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|327311915|ref|YP_004338812.1| - 4.5e-10 39.1 0.0 7e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|327311915|ref|YP_004338812.1| - 1.8e-08 34.3 0.0 2.9e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|327311915|ref|YP_004338812.1| - 5.9e-05 22.9 0.1 0.00017 21.4 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|327311915|ref|YP_004338812.1| - 0.00014 22.0 0.0 0.00017 21.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|327311915|ref|YP_004338812.1| - 0.0018 18.2 0.0 0.0036 17.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|327311915|ref|YP_004338812.1| - 0.0026 17.5 0.0 0.004 17.0 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Mec-17 PF05301.6 gi|327311915|ref|YP_004338812.1| - 0.054 13.4 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 Touch receptor neuron protein Mec-17 NMD3 PF04981.8 gi|327311916|ref|YP_004338813.1| - 2.2e-32 112.0 0.0 2.7e-32 111.7 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DUF504 PF04457.7 gi|327311916|ref|YP_004338813.1| - 0.011 15.8 0.0 0.047 13.8 0.0 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF504) Lar_restr_allev PF14354.1 gi|327311916|ref|YP_004338813.1| - 0.052 13.8 1.3 0.11 12.8 0.4 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-CHCC PF10276.4 gi|327311916|ref|YP_004338813.1| - 0.06 13.1 0.7 0.18 11.6 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf-ribbon_3 PF13248.1 gi|327311916|ref|YP_004338813.1| - 0.091 12.0 1.5 9.8 5.5 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.10 gi|327311916|ref|YP_004338813.1| - 0.21 11.3 1.4 0.31 10.8 0.1 1.9 2 0 0 2 2 2 0 BED zinc finger Prok-RING_1 PF14446.1 gi|327311916|ref|YP_004338813.1| - 2.2 8.0 5.2 1.8 8.3 0.6 2.5 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Sgf11 PF08209.6 gi|327311916|ref|YP_004338813.1| - 3.2 7.1 6.2 8.7 5.7 0.0 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-C2HC_2 PF13913.1 gi|327311916|ref|YP_004338813.1| - 6 6.6 10.1 0.44 10.2 0.6 2.9 2 1 0 2 2 2 0 zinc-finger of a C2HC-type DUF164 PF02591.10 gi|327311916|ref|YP_004338813.1| - 6.2 6.7 8.5 3.8 7.4 2.3 3.0 3 1 1 4 4 4 0 Putative zinc ribbon domain DNA_methylase PF00145.12 gi|327311917|ref|YP_004338814.1| - 7.9e-48 163.2 0.0 1.5e-31 109.7 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|327311917|ref|YP_004338814.1| - 4.7e-06 26.6 0.1 6.9e-06 26.0 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|327311917|ref|YP_004338814.1| - 0.0055 16.2 0.0 0.017 14.7 0.0 1.8 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase PDDEXK_1 PF12705.2 gi|327311918|ref|YP_004338815.1| - 0.014 14.7 0.3 0.016 14.6 0.2 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily MAP PF03642.8 gi|327311918|ref|YP_004338815.1| - 0.014 15.5 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 MAP domain DUF1064 PF06356.6 gi|327311918|ref|YP_004338815.1| - 0.032 14.2 0.5 0.057 13.4 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1064) PA14 PF07691.7 gi|327311918|ref|YP_004338815.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 PA14 domain Pyr_redox_2 PF07992.9 gi|327311919|ref|YP_004338816.1| - 8.6e-27 94.3 0.7 1.1e-26 93.9 0.5 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|327311919|ref|YP_004338816.1| - 1.1e-11 44.2 1.8 8.5e-06 24.8 1.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|327311919|ref|YP_004338816.1| - 2.9e-08 34.0 0.1 5.6e-06 26.5 0.0 2.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|327311919|ref|YP_004338816.1| - 4.1e-07 29.1 6.1 7.7e-06 25.0 0.7 3.0 2 1 1 3 3 3 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|327311919|ref|YP_004338816.1| - 3e-06 26.3 1.8 3e-06 26.3 1.2 3.3 2 2 1 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|327311919|ref|YP_004338816.1| - 5.8e-06 25.6 0.2 5.8e-06 25.6 0.1 2.4 3 0 0 3 3 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|327311919|ref|YP_004338816.1| - 0.00019 20.0 0.9 0.0044 15.5 0.5 2.3 1 1 1 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|327311919|ref|YP_004338816.1| - 0.00023 20.3 0.2 0.00023 20.3 0.2 2.0 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|327311919|ref|YP_004338816.1| - 0.00027 20.9 0.1 0.0006 19.7 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|327311919|ref|YP_004338816.1| - 0.017 15.5 2.5 0.44 10.9 1.1 3.0 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|327311919|ref|YP_004338816.1| - 0.021 13.7 0.2 0.51 9.2 0.0 2.6 2 1 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|327311919|ref|YP_004338816.1| - 0.049 12.5 0.3 0.098 11.5 0.2 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|327311919|ref|YP_004338816.1| - 0.083 11.9 0.3 0.16 10.9 0.2 1.5 1 0 0 1 1 1 0 FAD binding domain NAD_binding_9 PF13454.1 gi|327311919|ref|YP_004338816.1| - 0.13 12.0 3.0 0.64 9.7 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|327311919|ref|YP_004338816.1| - 0.23 10.0 2.1 0.15 10.7 0.2 1.6 2 0 0 2 2 2 0 Tryptophan halogenase TGS PF02824.16 gi|327311920|ref|YP_004338817.1| - 2.5e-16 59.2 0.0 6.8e-16 57.8 0.0 1.8 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|327311920|ref|YP_004338817.1| - 3.6e-08 33.3 0.0 6.8e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase CBS PF00571.23 gi|327311920|ref|YP_004338817.1| - 0.0075 16.0 0.0 2.2 8.1 0.0 2.8 2 0 0 2 2 2 2 CBS domain FeoB_N PF02421.13 gi|327311920|ref|YP_004338817.1| - 0.039 13.2 0.0 0.061 12.5 0.0 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B NAAA-beta PF15508.1 gi|327311920|ref|YP_004338817.1| - 0.093 13.0 0.2 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Gal4_dimer PF03902.8 gi|327311921|ref|YP_004338818.1| - 0.061 13.2 1.1 0.14 12.1 0.3 1.9 2 0 0 2 2 2 0 Gal4-like dimerisation domain DUF1978 PF09321.5 gi|327311921|ref|YP_004338818.1| - 0.062 12.7 0.3 0.11 11.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) MerR-DNA-bind PF09278.6 gi|327311921|ref|YP_004338818.1| - 0.2 12.1 4.4 1.3 9.5 0.5 2.6 1 1 1 2 2 2 0 MerR, DNA binding AAA PF00004.24 gi|327311922|ref|YP_004338819.1| - 1.6e-15 57.5 0.0 2.8e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|327311922|ref|YP_004338819.1| - 6.1e-15 55.2 0.0 5.8e-10 39.0 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|327311922|ref|YP_004338819.1| - 9.8e-13 47.9 0.0 2.8e-12 46.4 0.0 1.8 2 0 0 2 2 1 1 Replication factor C C-terminal domain Rad17 PF03215.10 gi|327311922|ref|YP_004338819.1| - 4.8e-10 38.7 0.0 6.8e-05 21.7 0.0 2.1 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|327311922|ref|YP_004338819.1| - 1.2e-09 37.5 0.0 2.6e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|327311922|ref|YP_004338819.1| - 1e-08 35.3 0.1 0.0046 17.0 0.0 2.9 2 2 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|327311922|ref|YP_004338819.1| - 2.5e-07 30.8 0.0 0.00039 20.4 0.0 2.6 2 1 1 3 3 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|327311922|ref|YP_004338819.1| - 3e-07 30.4 0.0 5.7e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|327311922|ref|YP_004338819.1| - 1.2e-05 24.2 0.0 0.015 14.0 0.0 2.1 2 0 0 2 2 2 2 TIP49 C-terminus AAA_3 PF07726.6 gi|327311922|ref|YP_004338819.1| - 2.1e-05 24.1 0.0 4.1e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|327311922|ref|YP_004338819.1| - 5.1e-05 22.7 0.1 0.00015 21.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|327311922|ref|YP_004338819.1| - 5.8e-05 22.3 0.0 0.0012 18.0 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|327311922|ref|YP_004338819.1| - 9.2e-05 22.1 0.0 0.00037 20.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|327311922|ref|YP_004338819.1| - 0.0001 22.0 0.0 0.00027 20.6 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|327311922|ref|YP_004338819.1| - 0.00012 21.7 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|327311922|ref|YP_004338819.1| - 0.00016 22.5 0.0 0.00039 21.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|327311922|ref|YP_004338819.1| - 0.00025 21.3 0.0 0.00069 19.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|327311922|ref|YP_004338819.1| - 0.00034 20.4 0.0 0.75 9.4 0.0 2.2 1 1 1 2 2 2 2 Archaeal ATPase PhoH PF02562.11 gi|327311922|ref|YP_004338819.1| - 0.00035 19.8 0.1 0.18 11.0 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein IstB_IS21 PF01695.12 gi|327311922|ref|YP_004338819.1| - 0.00048 19.6 0.0 0.002 17.5 0.0 2.0 1 1 0 1 1 1 1 IstB-like ATP binding protein DEAD PF00270.24 gi|327311922|ref|YP_004338819.1| - 0.00095 18.6 0.1 0.039 13.4 0.0 2.4 1 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_10 PF12846.2 gi|327311922|ref|YP_004338819.1| - 0.0028 17.1 0.0 2 7.7 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain RNA_helicase PF00910.17 gi|327311922|ref|YP_004338819.1| - 0.004 17.3 0.0 0.012 15.7 0.0 1.8 2 0 0 2 2 1 1 RNA helicase AAA_11 PF13086.1 gi|327311922|ref|YP_004338819.1| - 0.0041 16.7 0.0 0.018 14.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|327311922|ref|YP_004338819.1| - 0.0045 16.5 0.0 0.0077 15.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Sigma54_activ_2 PF14532.1 gi|327311922|ref|YP_004338819.1| - 0.0063 16.5 0.0 0.022 14.7 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|327311922|ref|YP_004338819.1| - 0.0088 15.9 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|327311922|ref|YP_004338819.1| - 0.013 15.1 0.2 0.16 11.4 0.1 2.3 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|327311922|ref|YP_004338819.1| - 0.013 14.4 0.0 0.12 11.2 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|327311922|ref|YP_004338819.1| - 0.02 14.8 0.0 0.046 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|327311922|ref|YP_004338819.1| - 0.025 13.4 0.0 0.18 10.6 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein ResIII PF04851.10 gi|327311922|ref|YP_004338819.1| - 0.031 14.1 0.0 0.25 11.1 0.0 2.1 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|327311922|ref|YP_004338819.1| - 0.033 13.7 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ArgK PF03308.11 gi|327311922|ref|YP_004338819.1| - 0.036 12.8 0.3 2.7 6.7 0.0 2.6 2 1 1 3 3 3 0 ArgK protein KTI12 PF08433.5 gi|327311922|ref|YP_004338819.1| - 0.05 12.8 0.0 0.08 12.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 FtsK_SpoIIIE PF01580.13 gi|327311922|ref|YP_004338819.1| - 0.067 12.6 0.0 0.21 11.0 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_2 PF07724.9 gi|327311922|ref|YP_004338819.1| - 0.082 12.8 0.0 0.23 11.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) PEPCK_ATP PF01293.15 gi|327311922|ref|YP_004338819.1| - 0.095 11.2 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase SNF2_N PF00176.18 gi|327311922|ref|YP_004338819.1| - 0.12 11.1 0.0 0.66 8.7 0.0 1.9 1 1 0 2 2 2 0 SNF2 family N-terminal domain ABC_tran PF00005.22 gi|327311922|ref|YP_004338819.1| - 0.13 12.5 0.0 0.46 10.7 0.0 2.0 1 1 0 1 1 1 0 ABC transporter NACHT PF05729.7 gi|327311922|ref|YP_004338819.1| - 0.14 11.8 0.0 4.2 6.9 0.0 2.3 1 1 1 2 2 2 0 NACHT domain Parvo_NS1 PF01057.12 gi|327311922|ref|YP_004338819.1| - 0.16 10.8 0.0 0.27 10.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TFIIB PF00382.14 gi|327311923|ref|YP_004338820.1| - 8.7e-33 111.9 2.3 5.2e-16 58.2 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|327311923|ref|YP_004338820.1| - 2e-17 62.1 2.0 3.3e-17 61.5 1.4 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|327311923|ref|YP_004338820.1| - 1.1e-08 34.6 0.1 0.00013 21.5 0.1 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Cyclin_C PF02984.14 gi|327311923|ref|YP_004338820.1| - 8.7e-06 25.6 0.0 0.0024 17.8 0.0 2.5 2 0 0 2 2 2 1 Cyclin, C-terminal domain RRN7 PF11781.3 gi|327311923|ref|YP_004338820.1| - 0.009 15.4 1.9 0.02 14.4 1.3 1.5 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Ribosomal_S27e PF01667.12 gi|327311923|ref|YP_004338820.1| - 0.02 14.4 1.2 0.036 13.6 0.8 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Lar_restr_allev PF14354.1 gi|327311923|ref|YP_004338820.1| - 0.046 14.0 0.2 0.11 12.8 0.2 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.7 gi|327311923|ref|YP_004338820.1| - 0.046 13.7 0.5 0.097 12.7 0.4 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF2318 PF10080.4 gi|327311923|ref|YP_004338820.1| - 0.089 12.5 0.4 0.19 11.5 0.3 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) FYDLN_acid PF09538.5 gi|327311923|ref|YP_004338820.1| - 0.091 13.3 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Rubredoxin PF00301.15 gi|327311923|ref|YP_004338820.1| - 0.14 12.0 0.3 12 5.8 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin DUF4206 PF13901.1 gi|327311923|ref|YP_004338820.1| - 0.14 11.6 0.1 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) A2L_zn_ribbon PF08792.5 gi|327311923|ref|YP_004338820.1| - 0.17 11.3 2.0 0.3 10.6 1.4 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Desulfoferrod_N PF06397.7 gi|327311923|ref|YP_004338820.1| - 0.2 11.0 5.0 0.47 9.8 3.5 1.6 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zf-ISL3 PF14690.1 gi|327311923|ref|YP_004338820.1| - 0.25 11.4 1.4 0.67 10.0 0.3 2.3 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Arena_nucleocap PF00843.12 gi|327311924|ref|YP_004338821.1| - 0.063 11.1 0.0 0.068 11.0 0.0 1.0 1 0 0 1 1 1 0 Arenavirus nucleocapsid protein BphX PF06139.7 gi|327311926|ref|YP_004338823.1| - 0.00074 19.1 6.0 0.00092 18.8 4.2 1.3 1 0 0 1 1 1 1 BphX-like PRA1 PF03208.14 gi|327311926|ref|YP_004338823.1| - 6.9 5.9 10.4 18 4.6 7.1 1.7 1 1 0 1 1 1 0 PRA1 family protein Ribosomal_L13e PF01294.13 gi|327311927|ref|YP_004338824.1| - 2.1e-07 30.5 1.3 3.3e-07 29.9 0.0 1.8 1 1 0 2 2 2 1 Ribosomal protein L13e Ribosomal_L15e PF00827.12 gi|327311927|ref|YP_004338824.1| - 0.00012 21.6 2.5 0.00022 20.8 1.7 1.5 1 0 0 1 1 1 1 Ribosomal L15 HTH_31 PF13560.1 gi|327311928|ref|YP_004338825.1| - 5.9e-10 39.1 0.1 1.3e-09 38.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|327311928|ref|YP_004338825.1| - 3.7e-08 33.2 0.0 8.9e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|327311928|ref|YP_004338825.1| - 3.2e-07 30.0 0.0 6.5e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix Reo_sigmaC PF04582.7 gi|327311929|ref|YP_004338826.1| - 5.7e-11 42.1 4.3 5.6e-05 22.4 0.1 2.5 2 0 0 2 2 2 2 Reovirus sigma C capsid protein WEMBL PF05701.6 gi|327311929|ref|YP_004338826.1| - 2.7e-06 26.1 39.9 0.00037 19.0 3.2 2.9 2 1 0 2 2 2 2 Weak chloroplast movement under blue light EzrA PF06160.7 gi|327311929|ref|YP_004338826.1| - 7.5e-06 24.4 37.7 1.4e-05 23.4 5.7 2.8 2 1 0 2 2 2 1 Septation ring formation regulator, EzrA Myosin_tail_1 PF01576.14 gi|327311929|ref|YP_004338826.1| - 8.7e-06 23.7 47.4 3.5e-05 21.7 32.9 1.8 1 1 0 1 1 1 1 Myosin tail APG6 PF04111.7 gi|327311929|ref|YP_004338826.1| - 1.4e-05 24.3 44.9 0.0015 17.6 11.4 3.3 2 1 1 3 3 3 2 Autophagy protein Apg6 MscS_porin PF12795.2 gi|327311929|ref|YP_004338826.1| - 1.5e-05 24.4 43.1 0.0019 17.5 6.5 3.2 2 1 1 3 3 3 3 Mechanosensitive ion channel porin domain TBPIP PF07106.8 gi|327311929|ref|YP_004338826.1| - 1.8e-05 24.3 42.0 0.016 14.7 5.0 4.1 1 1 3 4 4 4 4 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TPR_MLP1_2 PF07926.7 gi|327311929|ref|YP_004338826.1| - 2.5e-05 24.0 43.5 0.01 15.5 0.9 4.5 1 1 2 4 4 3 2 TPR/MLP1/MLP2-like protein Baculo_PEP_C PF04513.7 gi|327311929|ref|YP_004338826.1| - 2.5e-05 24.1 16.5 0.061 13.1 1.5 3.9 2 2 2 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus IncA PF04156.9 gi|327311929|ref|YP_004338826.1| - 2.9e-05 23.7 43.3 0.00035 20.2 5.4 3.2 2 1 0 2 2 2 1 IncA protein Laminin_II PF06009.7 gi|327311929|ref|YP_004338826.1| - 3.2e-05 23.6 34.0 0.0016 18.2 5.2 3.5 2 2 2 4 4 4 2 Laminin Domain II CENP-F_leu_zip PF10473.4 gi|327311929|ref|YP_004338826.1| - 4e-05 23.5 46.4 0.0015 18.3 4.7 4.3 1 1 2 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF948 PF06103.6 gi|327311929|ref|YP_004338826.1| - 6e-05 22.8 16.2 0.069 13.0 1.3 4.5 2 2 3 5 5 4 1 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.1 gi|327311929|ref|YP_004338826.1| - 8.1e-05 21.2 37.1 0.00038 19.0 15.6 2.2 1 1 1 2 2 2 2 AAA domain Spc7 PF08317.6 gi|327311929|ref|YP_004338826.1| - 0.00016 20.5 46.1 0.031 12.9 17.0 3.3 1 1 2 4 4 4 3 Spc7 kinetochore protein DUF4201 PF13870.1 gi|327311929|ref|YP_004338826.1| - 0.00019 20.9 47.8 0.00046 19.6 5.3 4.1 2 2 1 3 3 3 1 Domain of unknown function (DUF4201) MCPsignal PF00015.16 gi|327311929|ref|YP_004338826.1| - 0.00021 20.8 13.8 0.026 14.0 1.3 2.5 2 1 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HrpB7 PF09486.5 gi|327311929|ref|YP_004338826.1| - 0.00022 21.2 32.0 0.0004 20.3 0.7 4.6 2 2 2 4 4 4 1 Bacterial type III secretion protein (HrpB7) PilJ PF13675.1 gi|327311929|ref|YP_004338826.1| - 0.00025 21.3 15.6 0.68 10.2 1.9 3.9 1 1 3 4 4 3 2 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2968 PF11180.3 gi|327311929|ref|YP_004338826.1| - 0.00039 19.8 7.3 0.00039 19.8 5.1 3.5 2 1 2 4 4 4 1 Protein of unknown function (DUF2968) TMP_2 PF06791.8 gi|327311929|ref|YP_004338826.1| - 0.0005 19.7 5.4 0.16 11.6 0.1 2.6 2 1 0 2 2 2 2 Prophage tail length tape measure protein NPV_P10 PF05531.7 gi|327311929|ref|YP_004338826.1| - 0.0008 19.6 22.8 1.5 9.1 1.6 5.6 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF972 PF06156.8 gi|327311929|ref|YP_004338826.1| - 0.0009 19.5 34.6 0.22 11.9 0.6 4.4 2 2 2 4 4 4 2 Protein of unknown function (DUF972) COG2 PF06148.6 gi|327311929|ref|YP_004338826.1| - 0.0014 18.5 29.8 2.1 8.1 0.3 5.7 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.7 gi|327311929|ref|YP_004338826.1| - 0.0019 17.9 29.5 0.032 14.0 1.4 4.2 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) IFT57 PF10498.4 gi|327311929|ref|YP_004338826.1| - 0.0023 16.7 32.5 0.025 13.3 0.7 2.9 1 1 2 3 3 3 2 Intra-flagellar transport protein 57 FliJ PF02050.11 gi|327311929|ref|YP_004338826.1| - 0.0023 17.9 44.5 0.0078 16.2 3.3 5.0 2 2 3 5 5 4 2 Flagellar FliJ protein Macoilin PF09726.4 gi|327311929|ref|YP_004338826.1| - 0.0025 16.1 36.0 0.053 11.8 13.8 2.1 2 0 0 2 2 2 2 Transmembrane protein DUF3584 PF12128.3 gi|327311929|ref|YP_004338826.1| - 0.0029 15.0 40.2 0.0058 14.0 22.7 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.17 gi|327311929|ref|YP_004338826.1| - 0.0041 17.1 50.0 0.61 10.1 15.6 4.8 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain GAS PF13851.1 gi|327311929|ref|YP_004338826.1| - 0.0042 16.3 24.2 0.0042 16.3 16.8 3.1 2 2 0 2 2 2 1 Growth-arrest specific micro-tubule binding Nup54 PF13874.1 gi|327311929|ref|YP_004338826.1| - 0.0046 16.6 10.6 0.0046 16.6 7.3 4.4 2 2 2 4 4 4 2 Nucleoporin complex subunit 54 DUF3450 PF11932.3 gi|327311929|ref|YP_004338826.1| - 0.0054 16.0 28.2 0.096 11.9 0.4 3.3 2 1 1 3 3 3 2 Protein of unknown function (DUF3450) Prefoldin PF02996.12 gi|327311929|ref|YP_004338826.1| - 0.0055 16.3 36.4 0.34 10.5 0.9 6.6 2 2 5 8 8 8 1 Prefoldin subunit TMF_DNA_bd PF12329.3 gi|327311929|ref|YP_004338826.1| - 0.0058 16.4 56.5 0.062 13.1 4.2 5.9 3 2 2 5 5 5 2 TATA element modulatory factor 1 DNA binding Atg14 PF10186.4 gi|327311929|ref|YP_004338826.1| - 0.0087 15.0 52.6 0.36 9.7 9.1 3.9 1 1 1 3 3 3 2 UV radiation resistance protein and autophagy-related subunit 14 DUF4200 PF13863.1 gi|327311929|ref|YP_004338826.1| - 0.01 15.7 58.0 3.3 7.6 11.7 4.6 2 2 1 4 4 4 0 Domain of unknown function (DUF4200) APG17 PF04108.7 gi|327311929|ref|YP_004338826.1| - 0.013 14.3 26.2 0.58 8.8 0.4 3.9 1 1 3 4 4 4 0 Autophagy protein Apg17 CALCOCO1 PF07888.6 gi|327311929|ref|YP_004338826.1| - 0.015 13.6 38.9 0.17 10.1 7.1 2.1 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Snapin_Pallidin PF14712.1 gi|327311929|ref|YP_004338826.1| - 0.018 15.2 37.4 0.13 12.5 4.5 4.5 2 2 2 4 4 4 0 Snapin/Pallidin Syntaxin-6_N PF09177.6 gi|327311929|ref|YP_004338826.1| - 0.022 15.1 29.3 1.8 9.0 0.7 4.9 1 1 4 5 5 5 0 Syntaxin 6, N-terminal TMF_TATA_bd PF12325.3 gi|327311929|ref|YP_004338826.1| - 0.023 14.4 40.9 1.2 8.8 1.7 4.9 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding BEN PF10523.4 gi|327311929|ref|YP_004338826.1| - 0.024 14.6 0.8 0.17 11.9 0.0 2.8 2 2 1 4 4 1 0 BEN domain ATG16 PF08614.6 gi|327311929|ref|YP_004338826.1| - 0.027 14.2 39.9 0.09 12.5 5.6 3.8 2 2 1 3 3 3 0 Autophagy protein 16 (ATG16) COG5 PF10392.4 gi|327311929|ref|YP_004338826.1| - 0.04 13.8 21.6 0.99 9.3 2.7 4.7 2 2 4 6 6 6 0 Golgi transport complex subunit 5 Bacillus_HBL PF05791.6 gi|327311929|ref|YP_004338826.1| - 0.07 12.4 29.7 0.77 9.1 0.6 4.3 1 1 3 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) FH2 PF02181.18 gi|327311929|ref|YP_004338826.1| - 0.076 11.8 25.0 0.28 10.0 0.2 3.7 1 1 3 4 4 4 0 Formin Homology 2 Domain Mnd1 PF03962.10 gi|327311929|ref|YP_004338826.1| - 0.084 12.5 38.3 0.35 10.5 11.6 4.1 1 1 1 3 3 3 0 Mnd1 family Mating_N PF12731.2 gi|327311929|ref|YP_004338826.1| - 0.085 12.7 1.4 1.2 9.0 0.1 3.2 2 1 1 3 3 2 0 Mating-type protein beta 1 Myb_DNA-bind_5 PF13873.1 gi|327311929|ref|YP_004338826.1| - 0.086 12.7 0.1 0.086 12.7 0.0 4.4 4 1 0 4 4 3 0 Myb/SANT-like DNA-binding domain Filament PF00038.16 gi|327311929|ref|YP_004338826.1| - 0.087 12.2 46.2 0.066 12.6 5.6 3.4 2 2 1 3 3 3 0 Intermediate filament protein DUF2408 PF10303.4 gi|327311929|ref|YP_004338826.1| - 0.088 12.9 28.0 12 6.0 5.8 4.8 1 1 1 2 2 1 0 Protein of unknown function (DUF2408) GldM_N PF12081.3 gi|327311929|ref|YP_004338826.1| - 0.09 12.2 26.0 0.11 12.0 2.1 2.9 1 1 1 2 2 2 0 GldM N-terminal domain Hemerythrin PF01814.18 gi|327311929|ref|YP_004338826.1| - 0.09 12.9 19.1 4.8 7.3 6.2 4.8 2 2 0 2 2 2 0 Hemerythrin HHE cation binding domain DUF869 PF05911.6 gi|327311929|ref|YP_004338826.1| - 0.11 10.7 36.0 0.053 11.7 3.9 2.6 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) Laminin_I PF06008.9 gi|327311929|ref|YP_004338826.1| - 0.13 11.5 36.4 0.032 13.5 3.8 2.8 2 1 0 2 2 2 0 Laminin Domain I V_ATPase_I PF01496.14 gi|327311929|ref|YP_004338826.1| - 0.13 10.0 28.7 0.44 8.3 11.5 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family HlyD PF00529.15 gi|327311929|ref|YP_004338826.1| - 0.2 10.8 32.6 0.011 15.0 6.6 3.1 2 1 1 3 3 2 0 HlyD family secretion protein Spc24 PF08286.6 gi|327311929|ref|YP_004338826.1| - 0.22 11.2 35.8 1.4 8.6 2.3 5.4 2 2 3 5 5 5 0 Spc24 subunit of Ndc80 RmuC PF02646.11 gi|327311929|ref|YP_004338826.1| - 0.23 10.2 25.0 0.89 8.3 2.6 4.0 2 2 4 6 6 6 0 RmuC family Allexi_40kDa PF05549.6 gi|327311929|ref|YP_004338826.1| - 0.25 10.6 20.3 0.11 11.8 0.6 3.5 1 1 2 4 4 4 0 Allexivirus 40kDa protein MitMem_reg PF13012.1 gi|327311929|ref|YP_004338826.1| - 0.28 11.2 12.7 1.2 9.2 4.3 3.0 2 2 0 2 2 2 0 Maintenance of mitochondrial structure and function DUF2421 PF10334.4 gi|327311929|ref|YP_004338826.1| - 0.33 10.5 5.5 0.7 9.4 0.6 3.1 2 2 2 4 4 4 0 Protein of unknown function (DUF2421) PspA_IM30 PF04012.7 gi|327311929|ref|YP_004338826.1| - 0.36 10.1 41.9 0.08 12.2 1.3 4.7 2 2 2 4 4 4 0 PspA/IM30 family FUSC PF04632.7 gi|327311929|ref|YP_004338826.1| - 0.37 9.1 11.4 1.3 7.3 2.3 2.3 1 1 1 2 2 2 0 Fusaric acid resistance protein family Tweety PF04906.8 gi|327311929|ref|YP_004338826.1| - 0.38 9.1 9.1 1.3 7.4 0.5 2.4 2 0 0 2 2 2 0 Tweety DUF342 PF03961.8 gi|327311929|ref|YP_004338826.1| - 0.43 8.9 45.4 0.085 11.2 5.7 3.4 1 1 3 4 4 4 0 Protein of unknown function (DUF342) BLOC1_2 PF10046.4 gi|327311929|ref|YP_004338826.1| - 0.45 10.6 34.1 0.96 9.6 0.4 5.8 1 1 6 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cortex-I_coil PF09304.5 gi|327311929|ref|YP_004338826.1| - 0.47 10.5 47.0 0.047 13.7 6.4 3.7 2 1 1 3 3 2 0 Cortexillin I, coiled coil FlaC_arch PF05377.6 gi|327311929|ref|YP_004338826.1| - 0.48 10.3 32.1 2.4 8.1 1.0 6.7 3 2 3 6 6 4 0 Flagella accessory protein C (FlaC) Prefoldin_2 PF01920.15 gi|327311929|ref|YP_004338826.1| - 0.6 9.8 47.3 2.3 8.0 2.4 6.7 2 2 4 6 6 6 0 Prefoldin subunit ERM PF00769.14 gi|327311929|ref|YP_004338826.1| - 0.61 9.5 46.0 0.21 11.0 17.9 3.0 1 1 0 2 2 2 0 Ezrin/radixin/moesin family UPF0184 PF03670.8 gi|327311929|ref|YP_004338826.1| - 0.66 10.1 23.3 0.65 10.2 3.0 4.3 2 2 2 4 4 4 0 Uncharacterised protein family (UPF0184) LXG PF04740.7 gi|327311929|ref|YP_004338826.1| - 0.7 9.6 26.0 0.65 9.7 2.8 4.1 2 2 2 4 4 3 0 LXG domain of WXG superfamily Sec8_exocyst PF04048.9 gi|327311929|ref|YP_004338826.1| - 0.74 9.4 23.5 7 6.2 7.3 4.1 2 2 1 3 3 3 0 Sec8 exocyst complex component specific domain ApoO PF09769.4 gi|327311929|ref|YP_004338826.1| - 0.78 9.4 6.3 0.6 9.7 0.5 2.7 3 0 0 3 3 2 0 Apolipoprotein O WXG100 PF06013.7 gi|327311929|ref|YP_004338826.1| - 0.98 9.4 18.8 10 6.1 0.5 6.2 3 2 2 5 5 4 0 Proteins of 100 residues with WXG DUF3618 PF12277.3 gi|327311929|ref|YP_004338826.1| - 1.1 9.3 10.4 7.4 6.6 0.3 4.9 3 1 2 5 5 4 0 Protein of unknown function (DUF3618) ADIP PF11559.3 gi|327311929|ref|YP_004338826.1| - 1.1 9.1 44.9 0.18 11.6 13.0 3.6 2 1 2 4 4 3 0 Afadin- and alpha -actinin-Binding ECM11 PF15463.1 gi|327311929|ref|YP_004338826.1| - 1.2 9.4 28.7 0.9 9.8 4.9 4.4 1 1 1 3 3 3 0 Extracellular mutant protein 11 Vps51 PF08700.6 gi|327311929|ref|YP_004338826.1| - 1.2 8.9 30.1 16 5.3 0.3 6.4 2 2 2 5 5 5 0 Vps51/Vps67 Syntaxin PF00804.20 gi|327311929|ref|YP_004338826.1| - 1.2 9.2 41.6 0.13 12.4 3.7 4.6 2 2 1 3 3 2 0 Syntaxin CDC37_N PF03234.9 gi|327311929|ref|YP_004338826.1| - 1.3 9.3 36.2 2.1 8.6 14.2 3.7 1 1 2 3 3 3 0 Cdc37 N terminal kinase binding Prominin PF05478.6 gi|327311929|ref|YP_004338826.1| - 1.5 6.2 20.8 0.23 8.9 0.9 2.9 1 1 1 2 2 2 0 Prominin TMPIT PF07851.8 gi|327311929|ref|YP_004338826.1| - 1.5 7.7 24.5 1.8 7.5 7.7 2.9 2 2 1 3 3 3 0 TMPIT-like protein M_domain PF12938.2 gi|327311929|ref|YP_004338826.1| - 1.5 8.5 21.2 0.17 11.6 0.6 3.9 2 2 1 3 3 3 0 M domain of GW182 DASH_Dad2 PF08654.5 gi|327311929|ref|YP_004338826.1| - 1.7 8.6 24.9 4.5 7.3 0.7 4.4 2 2 2 4 4 4 0 DASH complex subunit Dad2 Rootletin PF15035.1 gi|327311929|ref|YP_004338826.1| - 1.8 8.5 42.1 1.3 8.9 4.8 3.5 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion DUF148 PF02520.12 gi|327311929|ref|YP_004338826.1| - 2.1 8.1 24.6 1.3 8.8 1.9 4.1 2 2 1 3 3 3 0 Domain of unknown function DUF148 MT PF12777.2 gi|327311929|ref|YP_004338826.1| - 2.1 6.9 20.3 0.33 9.6 0.3 3.4 1 1 1 3 3 3 0 Microtubule-binding stalk of dynein motor Sec34 PF04136.10 gi|327311929|ref|YP_004338826.1| - 2.2 7.9 16.3 1.9 8.2 4.3 3.0 1 1 2 3 3 3 0 Sec34-like family HSBP1 PF06825.7 gi|327311929|ref|YP_004338826.1| - 2.3 7.8 13.6 0.87 9.2 0.3 3.5 4 0 0 4 4 2 0 Heat shock factor binding protein 1 DUF2730 PF10805.3 gi|327311929|ref|YP_004338826.1| - 2.6 7.8 26.7 4.4 7.0 4.5 5.2 2 2 3 5 5 4 0 Protein of unknown function (DUF2730) Tropomyosin_1 PF12718.2 gi|327311929|ref|YP_004338826.1| - 2.6 7.8 44.8 2.5 7.9 5.1 3.6 1 1 2 3 3 2 0 Tropomyosin like PilO PF04350.8 gi|327311929|ref|YP_004338826.1| - 2.7 7.8 23.5 1.7 8.5 4.3 4.3 2 2 2 4 4 4 0 Pilus assembly protein, PilO DUF812 PF05667.6 gi|327311929|ref|YP_004338826.1| - 2.8 6.3 40.8 0.29 9.6 5.6 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF812) Fib_alpha PF08702.5 gi|327311929|ref|YP_004338826.1| - 3.2 7.8 30.1 5.8 7.0 9.6 3.6 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family LOH1CR12 PF10158.4 gi|327311929|ref|YP_004338826.1| - 3.2 7.5 17.7 0.75 9.5 0.6 3.8 1 1 1 3 3 3 0 Tumour suppressor protein Ax_dynein_light PF10211.4 gi|327311929|ref|YP_004338826.1| - 3.3 7.5 43.4 1.1 9.0 7.4 5.0 2 2 4 6 6 6 0 Axonemal dynein light chain DUF2203 PF09969.4 gi|327311929|ref|YP_004338826.1| - 3.4 7.9 28.0 0.68 10.1 1.5 4.4 1 1 1 2 2 1 0 Uncharacterized conserved protein (DUF2203) PEARLI-4 PF05278.7 gi|327311929|ref|YP_004338826.1| - 3.6 6.8 30.1 1.1 8.5 1.7 3.5 2 1 1 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF4559 PF15112.1 gi|327311929|ref|YP_004338826.1| - 4 6.5 26.2 0.18 10.9 6.8 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4559) DivIVA PF05103.8 gi|327311929|ref|YP_004338826.1| - 4.2 7.4 49.5 0.12 12.4 4.2 4.6 3 1 2 5 5 4 0 DivIVA protein CorA PF01544.13 gi|327311929|ref|YP_004338826.1| - 5.2 6.0 31.8 0.12 11.4 4.7 2.7 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein FliD_N PF02465.13 gi|327311929|ref|YP_004338826.1| - 5.3 7.4 16.3 5.5 7.4 0.0 4.7 2 2 3 5 5 4 0 Flagellar hook-associated protein 2 N-terminus Prp19 PF08606.6 gi|327311929|ref|YP_004338826.1| - 6.1 6.6 15.9 0.32 10.7 2.0 4.4 4 3 0 4 4 3 0 Prp19/Pso4-like USP8_interact PF08941.5 gi|327311929|ref|YP_004338826.1| - 6.9 5.9 22.1 2 7.7 0.3 4.0 2 2 2 4 4 4 0 USP8 interacting DOG1 PF14144.1 gi|327311929|ref|YP_004338826.1| - 7.2 6.7 10.1 2.2 8.3 0.3 4.1 2 1 2 4 4 3 0 Seed dormancy control FlxA PF14282.1 gi|327311929|ref|YP_004338826.1| - 8.6 6.3 35.9 6.1 6.8 3.1 4.7 2 2 2 4 4 4 0 FlxA-like protein TraF_2 PF13729.1 gi|327311929|ref|YP_004338826.1| - 8.6 5.0 9.1 10 4.8 0.3 3.2 2 1 1 3 3 3 0 F plasmid transfer operon, TraF, protein MutS_IV PF05190.13 gi|327311929|ref|YP_004338826.1| - 8.9 6.5 30.0 1.8 8.8 2.3 6.8 1 1 3 5 5 5 0 MutS family domain IV DUF2353 PF09789.4 gi|327311929|ref|YP_004338826.1| - 9.1 5.4 37.1 1.5 8.0 14.8 2.7 1 1 2 3 3 3 0 Uncharacterized coiled-coil protein (DUF2353) DUF373 PF04123.8 gi|327311930|ref|YP_004338827.1| - 6.5e-82 275.3 15.4 7.7e-82 275.0 10.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) UPF0020 PF01170.13 gi|327311931|ref|YP_004338828.1| - 3.6e-15 55.9 0.0 6e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|327311931|ref|YP_004338828.1| - 1.7e-12 47.4 1.7 2.6e-12 46.8 0.2 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|327311931|ref|YP_004338828.1| - 1.1e-06 28.9 0.0 2.6e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|327311931|ref|YP_004338828.1| - 0.00014 22.4 0.1 0.00067 20.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|327311931|ref|YP_004338828.1| - 0.00015 22.0 0.0 0.00026 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|327311931|ref|YP_004338828.1| - 0.0021 17.8 0.0 0.04 13.6 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|327311931|ref|YP_004338828.1| - 0.0034 16.9 0.0 0.0053 16.2 0.0 1.3 1 0 0 1 1 1 1 DNA methylase MethyltransfD12 PF02086.10 gi|327311931|ref|YP_004338828.1| - 0.021 14.2 0.0 0.03 13.7 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.1 gi|327311931|ref|YP_004338828.1| - 0.034 13.7 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|327311931|ref|YP_004338828.1| - 0.041 13.2 0.1 0.071 12.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 RNA_binding PF01877.12 gi|327311932|ref|YP_004338829.1| - 6.3e-22 77.8 0.0 7.5e-22 77.5 0.0 1.1 1 0 0 1 1 1 1 RNA binding AAA_18 PF13238.1 gi|327311933|ref|YP_004338830.1| - 1.4e-12 48.0 0.0 2.2e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|327311933|ref|YP_004338830.1| - 3.9e-07 30.9 0.1 7.1e-07 30.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|327311933|ref|YP_004338830.1| - 2.7e-05 24.0 0.0 4.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|327311933|ref|YP_004338830.1| - 0.057 12.5 0.2 0.19 10.7 0.1 1.9 1 1 1 2 2 2 0 KaiC CoaE PF01121.15 gi|327311933|ref|YP_004338830.1| - 0.081 12.3 0.3 2.4 7.5 0.0 2.2 2 0 0 2 2 2 0 Dephospho-CoA kinase Zeta_toxin PF06414.7 gi|327311933|ref|YP_004338830.1| - 0.085 11.9 0.3 0.94 8.5 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin Thymidylate_kin PF02223.12 gi|327311933|ref|YP_004338830.1| - 0.11 11.8 0.2 8.3 5.7 0.0 2.3 2 1 0 2 2 2 0 Thymidylate kinase TRM PF02005.11 gi|327311934|ref|YP_004338831.1| - 1.3e-80 271.1 0.0 4.1e-80 269.5 0.0 1.6 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.1 gi|327311934|ref|YP_004338831.1| - 0.00061 19.4 0.0 0.00082 18.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|327311934|ref|YP_004338831.1| - 0.0038 16.6 0.0 0.0057 16.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_26 PF13659.1 gi|327311934|ref|YP_004338831.1| - 0.0049 16.8 0.2 0.017 15.1 0.1 1.9 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|327311934|ref|YP_004338831.1| - 0.0072 15.7 0.0 0.012 14.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain HTH_3 PF01381.17 gi|327311935|ref|YP_004338832.1| - 3.9e-11 42.6 0.0 2.5e-10 40.0 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix HTH_31 PF13560.1 gi|327311935|ref|YP_004338832.1| - 1.1e-10 41.5 0.3 3.9e-10 39.7 0.2 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|327311935|ref|YP_004338832.1| - 5.8e-10 39.0 0.0 1.8e-09 37.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|327311935|ref|YP_004338832.1| - 0.00015 21.3 0.1 0.0018 17.8 0.1 2.5 3 0 0 3 3 3 1 HTH domain HTH_25 PF13413.1 gi|327311935|ref|YP_004338832.1| - 0.00097 18.7 0.1 0.0018 17.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|327311935|ref|YP_004338832.1| - 0.0013 18.2 0.0 0.0036 16.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_17 PF12728.2 gi|327311935|ref|YP_004338832.1| - 0.0086 16.3 0.1 0.17 12.1 0.0 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|327311935|ref|YP_004338832.1| - 0.012 15.4 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.11 gi|327311935|ref|YP_004338832.1| - 0.025 13.8 0.6 0.057 12.7 0.4 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_22 PF13309.1 gi|327311935|ref|YP_004338832.1| - 0.03 14.0 0.2 0.081 12.6 0.1 1.7 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.1 gi|327311935|ref|YP_004338832.1| - 0.057 13.4 0.1 0.14 12.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PUA PF01472.15 gi|327311936|ref|YP_004338833.1| - 3.1e-21 74.8 0.3 2e-20 72.3 0.1 2.1 2 0 0 2 2 2 1 PUA domain Peptidase_M43 PF05572.8 gi|327311936|ref|YP_004338833.1| - 0.16 11.5 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A APH PF01636.18 gi|327311937|ref|YP_004338834.1| - 1.1e-05 25.2 3.8 3e-05 23.8 2.6 1.7 1 1 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|327311937|ref|YP_004338834.1| - 0.00015 21.2 0.0 0.00018 20.9 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|327311937|ref|YP_004338834.1| - 0.038 13.1 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain Auto_anti-p27 PF06677.7 gi|327311938|ref|YP_004338835.1| - 8.7e-17 60.6 0.3 1.3e-16 60.0 0.2 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|327311938|ref|YP_004338835.1| - 3.9e-05 23.2 0.4 7e-05 22.4 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|327311938|ref|YP_004338835.1| - 0.00048 19.2 1.6 0.056 12.6 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|327311938|ref|YP_004338835.1| - 0.0012 18.6 0.4 0.0017 18.1 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|327311938|ref|YP_004338835.1| - 0.0022 17.7 0.3 0.0043 16.8 0.2 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|327311938|ref|YP_004338835.1| - 0.0027 17.6 0.1 1.4 8.9 0.0 2.2 2 0 0 2 2 2 1 zinc-finger TF_Zn_Ribbon PF08271.7 gi|327311938|ref|YP_004338835.1| - 0.0039 16.4 4.9 0.015 14.6 3.5 1.9 1 1 0 1 1 1 1 TFIIB zinc-binding zinc-ribbons_6 PF07191.7 gi|327311938|ref|YP_004338835.1| - 0.0042 16.8 0.3 0.006 16.3 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbons zf-FPG_IleRS PF06827.9 gi|327311938|ref|YP_004338835.1| - 0.0047 16.5 0.8 0.0083 15.7 0.6 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS GFA PF04828.9 gi|327311938|ref|YP_004338835.1| - 0.012 15.5 0.3 0.52 10.2 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme CpXC PF14353.1 gi|327311938|ref|YP_004338835.1| - 0.012 15.5 0.1 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 CpXC protein Ogr_Delta PF04606.7 gi|327311938|ref|YP_004338835.1| - 0.026 14.1 1.2 1.1 9.0 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Ribosomal_L37ae PF01780.14 gi|327311938|ref|YP_004338835.1| - 0.043 13.6 0.3 0.062 13.1 0.2 1.3 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF2296 PF10058.4 gi|327311938|ref|YP_004338835.1| - 0.05 13.3 0.4 5.4 6.8 0.0 2.4 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Gin PF10764.4 gi|327311938|ref|YP_004338835.1| - 0.057 13.1 0.9 2.7 7.7 0.2 2.2 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin DNA_ligase_ZBD PF03119.11 gi|327311938|ref|YP_004338835.1| - 0.065 12.9 1.2 0.065 12.9 0.9 2.3 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Elf1 PF05129.8 gi|327311938|ref|YP_004338835.1| - 0.081 12.6 0.8 0.18 11.5 0.6 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like HypA PF01155.14 gi|327311938|ref|YP_004338835.1| - 0.088 12.5 0.3 0.14 11.8 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Glyco_trans_1_2 PF13524.1 gi|327311938|ref|YP_004338835.1| - 0.089 13.0 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Sgf11 PF08209.6 gi|327311938|ref|YP_004338835.1| - 0.092 12.0 1.6 0.93 8.8 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|327311938|ref|YP_004338835.1| - 0.19 11.7 5.1 5.7 6.9 0.1 2.6 2 1 1 3 3 2 0 Zinc ribbon domain DUF1610 PF07754.6 gi|327311938|ref|YP_004338835.1| - 0.28 11.3 2.9 0.94 9.6 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-HIT PF04438.11 gi|327311938|ref|YP_004338835.1| - 0.31 10.7 4.3 0.62 9.7 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger UPF0547 PF10571.4 gi|327311938|ref|YP_004338835.1| - 1.5 8.6 3.7 6.8 6.4 2.6 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 ADH_N PF08240.7 gi|327311939|ref|YP_004338836.1| - 7.2e-35 119.0 0.5 1.5e-34 118.0 0.4 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|327311939|ref|YP_004338836.1| - 1.4e-33 115.1 0.3 2.1e-33 114.6 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|327311939|ref|YP_004338836.1| - 7.4e-19 68.8 1.5 1.2e-18 68.2 1.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|327311939|ref|YP_004338836.1| - 0.018 14.2 0.1 0.03 13.4 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|327311939|ref|YP_004338836.1| - 0.024 14.6 0.5 0.053 13.5 0.3 1.5 1 0 0 1 1 1 0 TrkA-N domain Radical_SAM PF04055.16 gi|327311939|ref|YP_004338836.1| - 0.079 13.1 0.3 0.079 13.1 0.2 2.1 2 1 0 2 2 2 0 Radical SAM superfamily Aldose_epim PF01263.15 gi|327311940|ref|YP_004338837.1| - 3.9e-32 111.5 0.0 6.3e-32 110.8 0.0 1.3 1 1 0 1 1 1 1 Aldose 1-epimerase Reo_sigmaC PF04582.7 gi|327311941|ref|YP_004338838.1| - 5.2e-05 22.5 2.1 6.5e-05 22.2 1.5 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein CR6_interact PF10147.4 gi|327311941|ref|YP_004338838.1| - 0.00015 21.1 7.6 0.0031 16.8 0.9 2.0 1 1 1 2 2 2 2 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Baculo_PEP_C PF04513.7 gi|327311941|ref|YP_004338838.1| - 0.0019 18.0 5.8 0.036 13.8 0.5 2.1 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Herpes_U30 PF04523.8 gi|327311941|ref|YP_004338838.1| - 0.0031 15.0 2.5 0.0036 14.8 1.7 1.1 1 0 0 1 1 1 1 Herpes virus tegument protein U30 FlgN PF05130.7 gi|327311941|ref|YP_004338838.1| - 0.0049 17.1 18.7 0.029 14.6 4.0 2.1 1 1 1 2 2 2 1 FlgN protein CK2S PF15011.1 gi|327311941|ref|YP_004338838.1| - 0.0063 16.3 5.7 0.011 15.4 3.7 1.6 1 1 0 1 1 1 1 Casein Kinase 2 substrate Hpt PF01627.18 gi|327311941|ref|YP_004338838.1| - 0.0065 16.4 8.4 0.15 12.1 1.0 2.4 2 0 0 2 2 2 1 Hpt domain Tektin PF03148.9 gi|327311941|ref|YP_004338838.1| - 0.013 14.0 7.6 0.05 12.1 1.0 2.1 1 1 1 2 2 2 0 Tektin family CbbQ_C PF08406.5 gi|327311941|ref|YP_004338838.1| - 0.016 15.2 6.7 0.46 10.5 1.6 2.4 1 1 1 2 2 2 0 CbbQ/NirQ/NorQ C-terminal Myosin_tail_1 PF01576.14 gi|327311941|ref|YP_004338838.1| - 0.02 12.6 11.2 0.022 12.4 7.8 1.0 1 0 0 1 1 1 0 Myosin tail NPV_P10 PF05531.7 gi|327311941|ref|YP_004338838.1| - 0.022 14.9 2.6 0.58 10.4 0.2 2.4 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|327311941|ref|YP_004338838.1| - 0.022 14.5 2.7 0.86 9.4 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF885 PF05960.6 gi|327311941|ref|YP_004338838.1| - 0.033 13.3 6.1 0.04 13.0 4.2 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) DASH_Duo1 PF08651.5 gi|327311941|ref|YP_004338838.1| - 0.035 13.6 2.9 4 7.0 0.1 2.7 2 1 1 3 3 3 0 DASH complex subunit Duo1 TMF_DNA_bd PF12329.3 gi|327311941|ref|YP_004338838.1| - 0.038 13.7 8.7 0.048 13.4 1.2 2.5 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding MCPsignal PF00015.16 gi|327311941|ref|YP_004338838.1| - 0.041 13.4 9.3 0.051 13.1 4.0 1.9 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Spectrin PF00435.16 gi|327311941|ref|YP_004338838.1| - 0.062 13.5 5.0 0.3 11.3 3.4 1.9 1 1 1 2 2 2 0 Spectrin repeat Troponin PF00992.15 gi|327311941|ref|YP_004338838.1| - 0.071 13.1 6.2 0.11 12.5 4.3 1.3 1 0 0 1 1 1 0 Troponin BLOC1_2 PF10046.4 gi|327311941|ref|YP_004338838.1| - 0.078 13.1 3.5 0.82 9.8 0.9 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT20 PF14931.1 gi|327311941|ref|YP_004338838.1| - 0.088 12.7 2.4 0.87 9.5 0.3 2.6 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 T2SF PF00482.18 gi|327311941|ref|YP_004338838.1| - 0.093 12.6 7.0 0.42 10.5 1.0 2.4 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein F Laminin_II PF06009.7 gi|327311941|ref|YP_004338838.1| - 0.098 12.4 6.4 0.48 10.1 4.4 1.9 1 1 0 1 1 1 0 Laminin Domain II DUF948 PF06103.6 gi|327311941|ref|YP_004338838.1| - 0.1 12.5 2.4 2 8.3 0.1 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) IFT57 PF10498.4 gi|327311941|ref|YP_004338838.1| - 0.1 11.3 2.6 0.22 10.2 1.8 1.3 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 SNARE PF05739.14 gi|327311941|ref|YP_004338838.1| - 0.1 12.2 3.0 0.39 10.4 0.3 2.7 1 1 0 2 2 2 0 SNARE domain AAA_13 PF13166.1 gi|327311941|ref|YP_004338838.1| - 0.12 10.8 3.7 0.14 10.6 2.6 1.1 1 0 0 1 1 1 0 AAA domain Dor1 PF04124.7 gi|327311941|ref|YP_004338838.1| - 0.13 10.7 4.4 0.15 10.4 3.0 1.1 1 0 0 1 1 1 0 Dor1-like family DUF1759 PF03564.10 gi|327311941|ref|YP_004338838.1| - 0.14 12.0 1.7 0.51 10.1 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) Vps5 PF09325.5 gi|327311941|ref|YP_004338838.1| - 0.15 11.2 7.4 0.38 9.9 5.1 1.7 1 1 0 1 1 1 0 Vps5 C terminal like Apolipoprotein PF01442.13 gi|327311941|ref|YP_004338838.1| - 0.16 11.4 11.2 1.1 8.7 7.6 1.9 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Prominin PF05478.6 gi|327311941|ref|YP_004338838.1| - 0.16 9.4 3.0 0.2 9.1 2.1 1.1 1 0 0 1 1 1 0 Prominin TroA PF01297.12 gi|327311941|ref|YP_004338838.1| - 0.16 11.1 3.8 0.24 10.6 0.3 2.1 1 1 1 2 2 2 0 Periplasmic solute binding protein family TMPIT PF07851.8 gi|327311941|ref|YP_004338838.1| - 0.16 10.9 0.5 0.18 10.8 0.3 1.2 1 0 0 1 1 1 0 TMPIT-like protein Atg14 PF10186.4 gi|327311941|ref|YP_004338838.1| - 0.18 10.7 8.4 0.21 10.4 5.8 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Acyl-CoA_dh_C PF12806.2 gi|327311941|ref|YP_004338838.1| - 0.19 11.5 10.5 1 9.2 0.9 2.7 1 1 2 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like LXG PF04740.7 gi|327311941|ref|YP_004338838.1| - 0.19 11.4 1.7 0.33 10.7 1.2 1.3 1 1 0 1 1 1 0 LXG domain of WXG superfamily Lectin_N PF03954.9 gi|327311941|ref|YP_004338838.1| - 0.22 10.9 2.3 0.99 8.8 1.6 1.8 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain WXG100 PF06013.7 gi|327311941|ref|YP_004338838.1| - 0.23 11.4 3.7 3.2 7.8 0.2 2.9 2 1 1 3 3 3 0 Proteins of 100 residues with WXG SpaB_C PF14028.1 gi|327311941|ref|YP_004338838.1| - 0.23 10.9 8.8 0.26 10.8 6.1 1.1 1 0 0 1 1 1 0 SpaB C-terminal domain FAM198 PF15051.1 gi|327311941|ref|YP_004338838.1| - 0.24 10.0 1.8 5.8 5.4 0.1 2.0 1 1 1 2 2 2 0 FAM198 protein MutS_III PF05192.13 gi|327311941|ref|YP_004338838.1| - 0.25 11.0 6.8 0.31 10.7 4.7 1.2 1 0 0 1 1 1 0 MutS domain III Prefoldin_3 PF13758.1 gi|327311941|ref|YP_004338838.1| - 0.29 10.9 2.5 1.4 8.7 1.7 2.0 1 1 0 1 1 1 0 Prefoldin subunit MbeD_MobD PF04899.7 gi|327311941|ref|YP_004338838.1| - 0.33 10.8 6.0 21 5.0 3.1 3.0 1 1 1 2 2 2 0 MbeD/MobD like DASH_Spc34 PF08657.5 gi|327311941|ref|YP_004338838.1| - 0.33 10.5 3.5 0.65 9.6 2.4 1.6 1 1 0 1 1 1 0 DASH complex subunit Spc34 GAT PF03127.9 gi|327311941|ref|YP_004338838.1| - 0.34 10.9 4.0 0.94 9.4 0.7 2.2 1 1 1 2 2 2 0 GAT domain DUF3829 PF12889.2 gi|327311941|ref|YP_004338838.1| - 0.38 9.9 2.2 0.68 9.0 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3829) CENP-Q PF13094.1 gi|327311941|ref|YP_004338838.1| - 0.38 10.7 6.8 0.51 10.3 4.7 1.3 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2580 PF10824.3 gi|327311941|ref|YP_004338838.1| - 0.41 11.0 8.6 0.49 10.7 3.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2580) HAUS6_N PF14661.1 gi|327311941|ref|YP_004338838.1| - 0.41 9.9 6.0 0.46 9.7 4.2 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus YccJ PF13993.1 gi|327311941|ref|YP_004338838.1| - 0.45 10.6 4.6 1.8 8.6 0.1 2.8 1 1 2 3 3 3 0 YccJ-like protein OmpH PF03938.9 gi|327311941|ref|YP_004338838.1| - 0.46 10.3 7.2 0.6 10.0 5.0 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) YPEB PF14620.1 gi|327311941|ref|YP_004338838.1| - 0.48 9.3 3.2 2.6 6.9 0.1 1.8 1 1 1 2 2 2 0 YpeB sporulation FUSC-like PF12805.2 gi|327311941|ref|YP_004338838.1| - 0.51 9.2 5.3 1.2 7.9 3.6 1.7 1 1 0 1 1 1 0 FUSC-like inner membrane protein yccS Fib_alpha PF08702.5 gi|327311941|ref|YP_004338838.1| - 0.51 10.4 2.3 5.9 7.0 0.2 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family ADIP PF11559.3 gi|327311941|ref|YP_004338838.1| - 0.55 10.1 8.5 0.81 9.5 4.7 1.8 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding ATG16 PF08614.6 gi|327311941|ref|YP_004338838.1| - 0.56 9.9 8.5 0.51 10.1 1.6 2.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) TBPIP PF07106.8 gi|327311941|ref|YP_004338838.1| - 0.59 9.6 3.8 2.5 7.6 2.4 1.9 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) SlyX PF04102.7 gi|327311941|ref|YP_004338838.1| - 0.71 10.2 7.8 6.5 7.2 0.8 3.1 1 1 2 3 3 3 0 SlyX Phasin PF05597.6 gi|327311941|ref|YP_004338838.1| - 0.79 9.4 6.6 1.9 8.2 4.6 1.6 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Seryl_tRNA_N PF02403.17 gi|327311941|ref|YP_004338838.1| - 0.85 9.6 9.5 4.1 7.4 2.0 2.7 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF972 PF06156.8 gi|327311941|ref|YP_004338838.1| - 0.97 9.8 4.5 19 5.6 3.1 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF972) HAMP PF00672.20 gi|327311941|ref|YP_004338838.1| - 0.99 9.6 8.3 9 6.5 1.0 3.2 1 1 2 3 3 3 0 HAMP domain IncA PF04156.9 gi|327311941|ref|YP_004338838.1| - 1 8.9 11.2 4.9 6.7 7.8 1.9 1 1 0 1 1 1 0 IncA protein Phage_GPO PF05929.6 gi|327311941|ref|YP_004338838.1| - 1.2 8.3 7.6 3.7 6.7 0.6 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase HTH_37 PF13744.1 gi|327311941|ref|YP_004338838.1| - 1.2 8.9 8.7 0.8 9.5 1.9 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain DUF2894 PF11445.3 gi|327311941|ref|YP_004338838.1| - 1.4 9.1 8.3 3 8.0 5.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2894) DUF2664 PF10867.3 gi|327311941|ref|YP_004338838.1| - 1.5 9.5 6.7 29 5.3 4.6 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2664) DUF3486 PF11985.3 gi|327311941|ref|YP_004338838.1| - 1.6 8.7 12.8 5.5 7.0 8.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3486) FUSC PF04632.7 gi|327311941|ref|YP_004338838.1| - 1.7 6.9 12.9 2 6.7 9.0 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Mod_r PF07200.8 gi|327311941|ref|YP_004338838.1| - 1.8 8.4 6.7 15 5.4 4.2 2.1 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein APG6 PF04111.7 gi|327311941|ref|YP_004338838.1| - 2.1 7.3 6.0 2.8 6.8 3.4 1.4 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF3708 PF12501.3 gi|327311941|ref|YP_004338838.1| - 2.2 8.0 8.2 7.8 6.3 5.7 1.8 1 1 0 1 1 1 0 Phosphate ATP-binding cassette transporter Spc7 PF08317.6 gi|327311941|ref|YP_004338838.1| - 2.3 6.8 7.0 4 6.0 4.8 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein COG2 PF06148.6 gi|327311941|ref|YP_004338838.1| - 2.3 8.1 6.8 14 5.5 4.7 2.1 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Vps51 PF08700.6 gi|327311941|ref|YP_004338838.1| - 2.3 8.1 5.8 4.1 7.3 0.2 2.6 1 1 0 2 2 2 0 Vps51/Vps67 DUF4404 PF14357.1 gi|327311941|ref|YP_004338838.1| - 2.4 8.6 7.3 4.9 7.6 2.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Acyl-CoA_dh_2 PF08028.6 gi|327311941|ref|YP_004338838.1| - 2.4 8.4 14.4 2.3 8.4 3.3 2.1 1 1 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain GvpL_GvpF PF06386.6 gi|327311941|ref|YP_004338838.1| - 3.5 7.1 8.8 23 4.4 6.0 1.9 1 1 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF DUF3618 PF12277.3 gi|327311941|ref|YP_004338838.1| - 3.6 7.7 12.9 2.1 8.4 0.4 3.9 2 2 1 3 3 3 0 Protein of unknown function (DUF3618) PEP-utilisers_N PF05524.8 gi|327311941|ref|YP_004338838.1| - 3.6 7.3 14.6 32 4.3 10.1 2.4 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal RecR PF02132.10 gi|327311941|ref|YP_004338838.1| - 4.2 6.8 7.4 3.3 7.2 0.7 3.3 3 1 0 3 3 2 0 RecR protein DUF1843 PF08898.5 gi|327311941|ref|YP_004338838.1| - 5.8 7.0 9.6 1.7 8.7 0.9 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF1843) HTH_5 PF01022.15 gi|327311942|ref|YP_004338839.1| - 3.3e-12 45.8 0.2 5e-12 45.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|327311942|ref|YP_004338839.1| - 5e-08 32.1 0.4 7.7e-08 31.6 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|327311942|ref|YP_004338839.1| - 1.5e-07 31.0 0.2 2e-07 30.6 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|327311942|ref|YP_004338839.1| - 1.6e-07 30.9 0.0 3.3e-07 29.9 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|327311942|ref|YP_004338839.1| - 7e-05 22.4 0.0 9.8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|327311942|ref|YP_004338839.1| - 0.0002 20.9 0.1 0.00033 20.3 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_10 PF04967.7 gi|327311942|ref|YP_004338839.1| - 0.00047 19.6 0.2 0.0014 18.1 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain B-block_TFIIIC PF04182.7 gi|327311942|ref|YP_004338839.1| - 0.00051 19.8 0.1 0.00058 19.6 0.1 1.3 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_11 PF08279.7 gi|327311942|ref|YP_004338839.1| - 0.00058 19.4 0.0 0.00075 19.0 0.0 1.2 1 0 0 1 1 1 1 HTH domain GerE PF00196.14 gi|327311942|ref|YP_004338839.1| - 0.0012 18.1 0.1 0.0021 17.3 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_29 PF13551.1 gi|327311942|ref|YP_004338839.1| - 0.0012 18.9 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix FaeA PF04703.7 gi|327311942|ref|YP_004338839.1| - 0.0012 18.9 0.1 0.0015 18.6 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein MarR PF01047.17 gi|327311942|ref|YP_004338839.1| - 0.0014 18.3 0.1 0.0021 17.7 0.1 1.2 1 0 0 1 1 1 1 MarR family DUF2089 PF09862.4 gi|327311942|ref|YP_004338839.1| - 0.0018 18.0 0.1 0.0018 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) HTH_28 PF13518.1 gi|327311942|ref|YP_004338839.1| - 0.0019 18.1 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|327311942|ref|YP_004338839.1| - 0.002 17.2 0.0 0.0031 16.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_45 PF14947.1 gi|327311942|ref|YP_004338839.1| - 0.0032 17.2 0.5 0.0041 16.8 0.3 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix Sulfolobus_pRN PF05584.6 gi|327311942|ref|YP_004338839.1| - 0.0041 17.0 0.1 0.005 16.7 0.1 1.2 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein Rrf2 PF02082.15 gi|327311942|ref|YP_004338839.1| - 0.0048 16.9 0.1 0.0066 16.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|327311942|ref|YP_004338839.1| - 0.0077 16.5 0.0 0.0097 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|327311942|ref|YP_004338839.1| - 0.011 15.1 0.0 0.022 14.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 FeoC PF09012.5 gi|327311942|ref|YP_004338839.1| - 0.014 15.0 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator LexA_DNA_bind PF01726.11 gi|327311942|ref|YP_004338839.1| - 0.017 14.6 0.1 0.034 13.7 0.0 1.5 2 0 0 2 2 1 0 LexA DNA binding domain HTH_9 PF08221.6 gi|327311942|ref|YP_004338839.1| - 0.023 14.5 0.1 0.063 13.1 0.0 1.6 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF4423 PF14394.1 gi|327311942|ref|YP_004338839.1| - 0.03 13.8 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_30 PF13556.1 gi|327311942|ref|YP_004338839.1| - 0.031 13.8 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|327311942|ref|YP_004338839.1| - 0.032 13.8 0.0 0.036 13.6 0.0 1.2 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_DeoR PF08220.7 gi|327311942|ref|YP_004338839.1| - 0.034 13.6 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|327311942|ref|YP_004338839.1| - 0.035 14.0 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|327311942|ref|YP_004338839.1| - 0.046 13.3 0.0 0.063 12.8 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|327311942|ref|YP_004338839.1| - 0.051 13.3 0.0 0.07 12.9 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF1495 PF07381.6 gi|327311942|ref|YP_004338839.1| - 0.068 12.8 0.1 0.18 11.4 0.1 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF2250 PF10007.4 gi|327311942|ref|YP_004338839.1| - 0.078 12.8 0.2 0.1 12.4 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.1 gi|327311942|ref|YP_004338839.1| - 0.081 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain NUMOD1 PF07453.8 gi|327311942|ref|YP_004338839.1| - 0.086 12.7 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 NUMOD1 domain DUF2513 PF10711.4 gi|327311942|ref|YP_004338839.1| - 0.11 12.6 0.0 0.13 12.3 0.0 1.3 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_34 PF13601.1 gi|327311942|ref|YP_004338839.1| - 0.11 12.5 0.1 0.16 11.9 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.16 gi|327311942|ref|YP_004338839.1| - 0.12 11.8 0.0 0.34 10.3 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HxlR PF01638.12 gi|327311942|ref|YP_004338839.1| - 0.13 11.9 0.1 0.19 11.4 0.1 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Hydantoinase_B PF02538.9 gi|327311943|ref|YP_004338840.1| - 1.4e-144 482.2 0.0 1.6e-144 482.0 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|327311944|ref|YP_004338841.1| - 3.5e-87 292.1 4.0 3.5e-87 292.1 2.8 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|327311944|ref|YP_004338841.1| - 3e-45 153.8 0.0 7e-45 152.6 0.0 1.7 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|327311944|ref|YP_004338841.1| - 0.00087 17.7 1.4 0.11 10.8 0.0 2.9 2 1 1 3 3 3 2 MutL protein BcrAD_BadFG PF01869.15 gi|327311944|ref|YP_004338841.1| - 0.0039 16.5 0.0 0.015 14.5 0.0 2.0 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Sugar_tr PF00083.19 gi|327311945|ref|YP_004338842.1| - 2.2e-23 82.5 38.6 7.3e-19 67.6 9.3 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|327311945|ref|YP_004338842.1| - 2.5e-21 75.7 66.8 3.3e-11 42.4 28.7 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|327311945|ref|YP_004338842.1| - 0.0012 17.3 33.6 0.0015 16.9 1.7 2.5 2 1 0 2 2 2 2 MFS/sugar transport protein Cation_ATPase_C PF00689.16 gi|327311945|ref|YP_004338842.1| - 0.0028 17.2 4.0 0.0028 17.2 2.8 2.9 1 1 0 2 2 2 1 Cation transporting ATPase, C-terminus DUF998 PF06197.8 gi|327311946|ref|YP_004338843.1| - 2.8e-25 88.7 24.3 3.2e-25 88.5 16.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) YfhO PF09586.5 gi|327311946|ref|YP_004338843.1| - 0.15 10.0 5.7 0.16 10.0 4.0 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Tetraspannin PF00335.15 gi|327311946|ref|YP_004338843.1| - 4.4 6.5 7.1 21 4.3 4.9 2.1 1 1 0 1 1 1 0 Tetraspanin family NicO PF03824.11 gi|327311947|ref|YP_004338844.1| - 0.00088 18.6 1.2 0.00088 18.6 0.8 2.4 2 1 0 2 2 2 1 High-affinity nickel-transport protein LysE PF01810.13 gi|327311947|ref|YP_004338844.1| - 0.048 12.9 0.6 0.048 12.9 0.4 2.6 3 0 0 3 3 3 0 LysE type translocator DsbD_2 PF13386.1 gi|327311947|ref|YP_004338844.1| - 0.059 13.1 19.1 0.055 13.2 8.0 2.8 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region B12D PF06522.6 gi|327311947|ref|YP_004338844.1| - 6.1 6.6 5.8 0.52 10.0 0.3 2.0 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit EB_dh PF09459.5 gi|327311951|ref|YP_004338848.1| - 1e-64 218.5 0.9 1.5e-64 217.9 0.6 1.2 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase Syndecan PF01034.15 gi|327311951|ref|YP_004338848.1| - 0.0036 16.9 1.2 0.0087 15.6 0.8 1.6 1 0 0 1 1 1 1 Syndecan domain DUF912 PF06024.7 gi|327311951|ref|YP_004338848.1| - 0.061 13.3 0.3 0.17 11.9 0.0 1.8 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) TMEM154 PF15102.1 gi|327311951|ref|YP_004338848.1| - 0.15 11.7 8.5 0.21 11.2 5.9 1.2 1 0 0 1 1 1 0 TMEM154 protein family Rifin_STEVOR PF02009.11 gi|327311951|ref|YP_004338848.1| - 0.16 11.6 1.3 0.2 11.2 0.9 1.1 1 0 0 1 1 1 0 Rifin/stevor family SSP160 PF06933.6 gi|327311951|ref|YP_004338848.1| - 0.4 8.5 15.0 0.59 8.0 10.4 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF3439 PF11921.3 gi|327311951|ref|YP_004338848.1| - 0.59 9.8 16.2 1.2 8.9 11.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) Mucin PF01456.12 gi|327311951|ref|YP_004338848.1| - 1.2 8.8 25.4 2.1 8.0 17.6 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Rieske PF00355.21 gi|327311952|ref|YP_004338849.1| - 5.3e-12 45.1 0.1 9.8e-12 44.2 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Cytochrom_B_N_2 PF13631.1 gi|327311953|ref|YP_004338850.1| - 9.4e-41 139.3 9.9 9.4e-41 139.3 6.9 2.9 3 0 0 3 3 3 2 Cytochrome b(N-terminal)/b6/petB ECH PF00378.15 gi|327311954|ref|YP_004338851.1| - 9.6e-20 70.7 0.0 1.1e-19 70.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family SurE PF01975.12 gi|327311955|ref|YP_004338852.1| - 1.1e-51 174.9 0.0 1.4e-51 174.6 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF998 PF06197.8 gi|327311956|ref|YP_004338853.1| - 9.3e-23 80.4 24.3 1.1e-22 80.2 16.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Frag1 PF10277.4 gi|327311956|ref|YP_004338853.1| - 2.9e-07 30.1 3.0 4.1e-07 29.7 2.1 1.2 1 0 0 1 1 1 1 Frag1/DRAM/Sfk1 family TauE PF01925.14 gi|327311956|ref|YP_004338853.1| - 2.4 7.5 26.0 1.5 8.2 16.5 1.6 1 1 0 1 1 1 0 Sulfite exporter TauE/SafE AA_permease_2 PF13520.1 gi|327311957|ref|YP_004338854.1| - 2.5e-27 95.4 45.1 6e-27 94.2 31.2 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|327311957|ref|YP_004338854.1| - 1.4e-21 76.4 46.0 2.5e-21 75.5 31.9 1.4 1 1 0 1 1 1 1 Amino acid permease Nitroreductase PF00881.19 gi|327311957|ref|YP_004338854.1| - 3.8 7.2 5.7 0.77 9.5 1.0 2.0 2 1 0 2 2 2 0 Nitroreductase family TauE PF01925.14 gi|327311959|ref|YP_004338856.1| - 1.4e-46 158.8 40.5 1.6e-46 158.6 28.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CxxCxxCC PF03692.10 gi|327311960|ref|YP_004338857.1| - 0.0052 17.2 0.0 0.0076 16.7 0.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain PIN PF01850.16 gi|327311961|ref|YP_004338858.1| - 3.7e-14 53.0 0.9 4.4e-14 52.8 0.6 1.1 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|327311962|ref|YP_004338859.1| - 0.0013 18.4 0.8 0.0039 16.8 0.6 1.8 1 1 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|327311962|ref|YP_004338859.1| - 0.0026 17.4 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 MraZ protein DUF3054 PF11255.3 gi|327311963|ref|YP_004338860.1| - 0.18 11.6 5.1 8.2 6.3 2.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3054) ATPase_gene1 PF09527.5 gi|327311963|ref|YP_004338860.1| - 0.21 11.3 15.0 0.18 11.6 5.7 2.3 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF4400 PF14348.1 gi|327311963|ref|YP_004338860.1| - 0.36 10.1 0.1 0.36 10.1 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4400) Wzz PF02706.10 gi|327311963|ref|YP_004338860.1| - 1 9.1 4.0 1.5 8.5 2.8 1.3 1 0 0 1 1 1 0 Chain length determinant protein ABC2_membrane_4 PF12730.2 gi|327311963|ref|YP_004338860.1| - 4.8 6.2 15.6 6.7 5.7 10.8 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein PrgI PF12666.2 gi|327311963|ref|YP_004338860.1| - 5.1 7.3 9.5 1.4 9.0 4.5 1.6 1 1 1 2 2 2 0 PrgI family protein DUF1275 PF06912.6 gi|327311963|ref|YP_004338860.1| - 7.1 5.7 14.7 1.3 8.2 7.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1275) DUF3329 PF11808.3 gi|327311963|ref|YP_004338860.1| - 7.2 6.7 13.3 0.33 11.0 1.4 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF3329) Myc_target_1 PF15179.1 gi|327311963|ref|YP_004338860.1| - 8.4 5.9 8.3 17 4.9 0.1 2.1 2 0 0 2 2 2 0 Myc target protein 1 MreD PF04093.7 gi|327311963|ref|YP_004338860.1| - 8.6 6.1 12.4 21 4.9 8.6 1.8 1 1 0 1 1 1 0 rod shape-determining protein MreD Oxidored_q2 PF00420.19 gi|327311963|ref|YP_004338860.1| - 8.7 6.0 11.4 15 5.2 7.9 1.5 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2198 PF09964.4 gi|327311963|ref|YP_004338860.1| - 8.9 6.1 8.7 1.4 8.7 3.4 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) MFS_1 PF07690.11 gi|327311964|ref|YP_004338861.1| - 1.6e-18 66.5 53.3 1.1e-12 47.3 19.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|327311964|ref|YP_004338861.1| - 0.0065 16.4 1.6 0.0065 16.4 1.1 3.2 3 1 0 3 3 3 1 Protein of unknown function (DUF1228) DUF2613 PF11021.3 gi|327311964|ref|YP_004338861.1| - 1.2 8.8 10.9 2.7 7.7 0.4 4.2 3 1 1 4 4 4 0 Protein of unknown function (DUF2613) Glyco_transf_5 PF08323.6 gi|327311966|ref|YP_004338863.1| - 2.2e-39 135.4 0.0 3.6e-39 134.7 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|327311966|ref|YP_004338863.1| - 1.1e-23 83.5 0.0 3.2e-23 82.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|327311966|ref|YP_004338863.1| - 3e-11 43.7 7.9 3e-11 43.7 5.5 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|327311966|ref|YP_004338863.1| - 1.6e-09 37.9 0.2 4.6e-09 36.5 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|327311966|ref|YP_004338863.1| - 0.00077 19.2 0.1 0.2 11.3 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|327311966|ref|YP_004338863.1| - 0.12 12.6 0.0 0.37 11.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 NTP_transferase PF00483.18 gi|327311967|ref|YP_004338864.1| - 1.2e-36 126.2 0.0 1.5e-36 125.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|327311967|ref|YP_004338864.1| - 1.5e-10 40.1 7.5 0.00041 19.7 0.6 4.7 2 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|327311967|ref|YP_004338864.1| - 0.00022 21.3 0.0 0.00031 20.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Trp_syntA PF00290.15 gi|327311968|ref|YP_004338865.1| - 1.9e-17 62.7 0.0 3.1e-17 61.9 0.0 1.3 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|327311968|ref|YP_004338865.1| - 0.0006 19.1 0.1 0.001 18.3 0.1 1.4 1 0 0 1 1 1 1 PcrB family NanE PF04131.9 gi|327311968|ref|YP_004338865.1| - 0.0017 17.3 0.2 0.0066 15.4 0.0 1.9 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase PA PF02225.17 gi|327311968|ref|YP_004338865.1| - 0.021 14.5 0.3 3.5 7.3 0.0 2.2 2 0 0 2 2 2 0 PA domain FMN_dh PF01070.13 gi|327311968|ref|YP_004338865.1| - 0.023 13.5 0.1 0.023 13.5 0.1 1.4 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPS PF00218.16 gi|327311968|ref|YP_004338865.1| - 0.081 11.9 0.0 0.4 9.6 0.0 1.8 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase IMPDH PF00478.20 gi|327311968|ref|YP_004338865.1| - 0.12 11.1 0.1 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|327311968|ref|YP_004338865.1| - 0.13 11.5 0.0 0.33 10.1 0.0 1.6 2 0 0 2 2 2 0 Histidine biosynthesis protein EamA PF00892.15 gi|327311969|ref|YP_004338866.1| - 3.2e-28 98.2 37.1 1.6e-16 60.4 11.0 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|327311969|ref|YP_004338866.1| - 6.6e-06 26.3 35.7 0.0042 17.2 6.8 3.3 1 1 2 3 3 3 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|327311969|ref|YP_004338866.1| - 0.045 13.4 24.6 0.52 9.9 4.4 3.4 2 2 0 3 3 3 0 Triose-phosphate Transporter family DUF4293 PF14126.1 gi|327311969|ref|YP_004338866.1| - 0.083 12.8 0.4 0.083 12.8 0.3 2.1 2 2 0 2 2 2 0 Domain of unknown function (DUF4293) PALP PF00291.20 gi|327311970|ref|YP_004338867.1| - 2.4e-37 128.8 0.2 3.5e-37 128.2 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glycos_transf_3 PF00591.16 gi|327311971|ref|YP_004338868.1| - 3e-80 269.2 0.1 3.8e-80 268.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|327311971|ref|YP_004338868.1| - 1.7e-20 72.3 0.9 5.5e-20 70.7 0.2 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.17 gi|327311972|ref|YP_004338869.1| - 1.9e-18 66.7 0.0 3e-18 66.0 0.0 1.3 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DUF3511 PF12023.3 gi|327311972|ref|YP_004338869.1| - 0.11 11.7 0.1 2.3 7.6 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3511) MCC-bdg_PDZ PF10506.4 gi|327311973|ref|YP_004338870.1| - 0.0076 16.0 0.5 0.02 14.6 0.3 1.8 1 1 0 1 1 1 1 PDZ domain of MCC-2 bdg protein for Usher syndrome IncA PF04156.9 gi|327311973|ref|YP_004338870.1| - 0.013 15.0 0.3 0.019 14.5 0.2 1.2 1 0 0 1 1 1 0 IncA protein Seryl_tRNA_N PF02403.17 gi|327311973|ref|YP_004338870.1| - 0.039 13.9 1.6 0.065 13.2 1.1 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DASH_Dam1 PF08653.5 gi|327311973|ref|YP_004338870.1| - 0.075 12.8 0.2 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 DASH complex subunit Dam1 T2SF PF00482.18 gi|327311973|ref|YP_004338870.1| - 0.077 12.9 2.3 0.12 12.2 1.6 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F Flagellin_N PF00669.15 gi|327311973|ref|YP_004338870.1| - 0.12 12.1 0.4 0.18 11.5 0.3 1.3 1 1 0 1 1 1 0 Bacterial flagellin N-terminal helical region LTXXQ PF07813.7 gi|327311973|ref|YP_004338870.1| - 0.21 12.0 2.4 0.74 10.3 1.6 2.0 2 1 0 2 2 2 0 LTXXQ motif family protein FUSC PF04632.7 gi|327311973|ref|YP_004338870.1| - 0.29 9.5 8.0 0.36 9.2 5.5 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Isochorismatase PF00857.15 gi|327311974|ref|YP_004338871.1| - 7e-36 123.7 0.0 8.8e-36 123.4 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family ABC_tran PF00005.22 gi|327311975|ref|YP_004338872.1| - 8.1e-24 84.4 0.0 1.1e-23 83.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327311975|ref|YP_004338872.1| - 1e-16 61.7 0.0 1.5e-10 41.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|327311975|ref|YP_004338872.1| - 8.2e-05 22.0 0.1 0.00016 21.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|327311975|ref|YP_004338872.1| - 0.00024 21.1 0.1 0.00071 19.6 0.1 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|327311975|ref|YP_004338872.1| - 0.006 16.9 0.1 0.0099 16.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|327311975|ref|YP_004338872.1| - 0.0096 15.6 0.6 0.024 14.3 0.2 1.9 2 0 0 2 2 2 1 Part of AAA domain MobB PF03205.9 gi|327311975|ref|YP_004338872.1| - 0.011 15.3 0.1 0.054 13.2 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|327311975|ref|YP_004338872.1| - 0.019 14.8 0.0 0.83 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|327311975|ref|YP_004338872.1| - 0.023 14.3 0.1 0.043 13.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SRP54 PF00448.17 gi|327311975|ref|YP_004338872.1| - 0.023 14.1 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|327311975|ref|YP_004338872.1| - 0.035 14.3 0.0 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|327311975|ref|YP_004338872.1| - 0.042 13.4 0.1 0.14 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|327311975|ref|YP_004338872.1| - 0.045 13.4 0.0 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|327311975|ref|YP_004338872.1| - 0.05 13.2 0.0 0.091 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|327311975|ref|YP_004338872.1| - 0.056 13.5 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|327311975|ref|YP_004338872.1| - 0.065 14.0 0.4 0.14 12.9 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|327311975|ref|YP_004338872.1| - 0.072 11.5 0.0 0.1 11.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|327311975|ref|YP_004338872.1| - 0.085 12.2 0.0 0.89 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|327311975|ref|YP_004338872.1| - 0.1 12.4 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|327311975|ref|YP_004338872.1| - 0.15 11.1 0.1 0.25 10.4 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|327311975|ref|YP_004338872.1| - 0.19 10.7 0.0 15 4.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.10 gi|327311975|ref|YP_004338872.1| - 0.21 10.2 0.0 0.32 9.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC2_membrane PF01061.19 gi|327311976|ref|YP_004338873.1| - 1.5e-07 30.8 15.7 1.5e-07 30.8 10.9 1.8 2 0 0 2 2 2 1 ABC-2 type transporter DUF677 PF05055.7 gi|327311976|ref|YP_004338873.1| - 3.8 6.1 4.3 5.5 5.5 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) ABC2_membrane PF01061.19 gi|327311977|ref|YP_004338874.1| - 7.8e-07 28.4 18.9 7.8e-07 28.4 13.1 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|327311977|ref|YP_004338874.1| - 0.00013 21.2 16.7 0.00017 20.8 11.5 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein KaiC PF06745.8 gi|327311978|ref|YP_004338875.1| - 2.4e-44 151.1 0.3 1.5e-42 145.2 0.2 2.1 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|327311978|ref|YP_004338875.1| - 3.3e-11 42.9 0.0 7.4e-11 41.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|327311978|ref|YP_004338875.1| - 3.2e-05 23.1 0.0 5.6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|327311978|ref|YP_004338875.1| - 4e-05 23.1 0.0 0.00012 21.6 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein Rad51 PF08423.6 gi|327311978|ref|YP_004338875.1| - 0.00062 18.7 0.0 0.0013 17.7 0.0 1.4 1 0 0 1 1 1 1 Rad51 GvpD PF07088.6 gi|327311978|ref|YP_004338875.1| - 0.00098 17.5 0.3 0.063 11.5 0.1 2.6 1 1 1 2 2 2 1 GvpD gas vesicle protein AAA_10 PF12846.2 gi|327311978|ref|YP_004338875.1| - 0.0013 18.2 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain DnaB_C PF03796.10 gi|327311978|ref|YP_004338875.1| - 0.0022 16.9 0.0 0.0063 15.4 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain PAXNEB PF05625.6 gi|327311978|ref|YP_004338875.1| - 0.0049 15.7 0.0 0.015 14.1 0.0 1.7 2 0 0 2 2 2 1 PAXNEB protein AAA_5 PF07728.9 gi|327311978|ref|YP_004338875.1| - 0.0065 16.2 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|327311978|ref|YP_004338875.1| - 0.013 15.5 0.0 0.049 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|327311978|ref|YP_004338875.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain DAP3 PF10236.4 gi|327311978|ref|YP_004338875.1| - 0.017 14.0 0.0 0.029 13.3 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 DUF2075 PF09848.4 gi|327311978|ref|YP_004338875.1| - 0.019 13.9 0.0 0.03 13.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|327311978|ref|YP_004338875.1| - 0.1 12.3 0.0 0.29 10.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|327311978|ref|YP_004338875.1| - 0.12 12.4 0.0 0.4 10.7 0.0 1.8 2 1 1 3 3 3 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|327311978|ref|YP_004338875.1| - 0.12 12.5 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Ribosomal_L30 PF00327.15 gi|327311979|ref|YP_004338876.1| - 2e-09 36.9 0.0 2.9e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.10 gi|327311980|ref|YP_004338877.1| - 2.7e-26 90.6 0.1 5.1e-26 89.7 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|327311980|ref|YP_004338877.1| - 6.4e-23 80.2 1.0 1.3e-22 79.3 0.7 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain NTP_transf_2 PF01909.18 gi|327311981|ref|YP_004338878.1| - 1.9e-13 50.5 0.1 2.6e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|327311981|ref|YP_004338878.1| - 0.0012 18.9 0.0 0.0017 18.3 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.8 gi|327311981|ref|YP_004338878.1| - 0.021 14.4 0.0 0.029 13.9 0.0 1.4 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|327311982|ref|YP_004338879.1| - 4.4e-25 87.8 1.8 5.1e-25 87.6 1.2 1.0 1 0 0 1 1 1 1 HEPN domain TPR_11 PF13414.1 gi|327311982|ref|YP_004338879.1| - 0.064 12.9 0.7 0.064 12.9 0.5 2.2 2 0 0 2 2 2 0 TPR repeat TPR_16 PF13432.1 gi|327311982|ref|YP_004338879.1| - 0.067 13.8 0.9 0.067 13.8 0.6 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat L27_1 PF09058.5 gi|327311982|ref|YP_004338879.1| - 0.32 10.8 1.7 36 4.3 0.0 3.3 3 1 0 3 3 3 0 L27_1 TPR_2 PF07719.12 gi|327311982|ref|YP_004338879.1| - 1.7 8.7 5.0 1.6 8.8 0.3 3.1 3 1 0 3 3 3 0 Tetratricopeptide repeat RNase_HII PF01351.13 gi|327311983|ref|YP_004338880.1| - 2.2e-36 125.3 0.0 2.6e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII zf-C2H2_4 PF13894.1 gi|327311984|ref|YP_004338881.1| - 0.00024 21.2 0.1 0.00036 20.6 0.1 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger DUF629 PF04780.7 gi|327311984|ref|YP_004338881.1| - 0.00081 18.0 0.0 0.00081 18.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) zf-BED PF02892.10 gi|327311984|ref|YP_004338881.1| - 0.0042 16.8 0.3 0.007 16.0 0.2 1.4 1 1 0 1 1 1 1 BED zinc finger Ribosomal_L37e PF01907.14 gi|327311984|ref|YP_004338881.1| - 0.0063 16.2 0.2 0.008 15.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e zf-C2H2 PF00096.21 gi|327311984|ref|YP_004338881.1| - 0.012 15.8 0.2 0.02 15.2 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type ROS_MUCR PF05443.6 gi|327311984|ref|YP_004338881.1| - 0.072 12.8 0.0 0.072 12.8 0.0 1.1 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein GFA PF04828.9 gi|327311984|ref|YP_004338881.1| - 0.093 12.6 0.0 0.093 12.6 0.0 1.1 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme HEPN PF05168.9 gi|327311985|ref|YP_004338882.1| - 2e-11 43.8 0.1 2.1e-10 40.4 0.0 1.9 1 1 0 1 1 1 1 HEPN domain PaREP1 PF05942.6 gi|327311985|ref|YP_004338882.1| - 0.034 13.9 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family zf-CXXC PF02008.15 gi|327311985|ref|YP_004338882.1| - 0.12 12.2 0.8 0.21 11.4 0.6 1.4 1 0 0 1 1 1 0 CXXC zinc finger domain UDG PF03167.14 gi|327311986|ref|YP_004338883.1| - 1.7e-36 124.9 0.0 2.1e-36 124.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Ribosomal_L18e PF00828.14 gi|327311987|ref|YP_004338884.1| - 4.2e-32 111.2 0.7 4.9e-32 111.0 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|327311988|ref|YP_004338885.1| - 7.7e-58 196.0 21.5 1.1e-57 195.5 14.9 1.2 1 0 0 1 1 1 1 SecY translocase PHBC_N PF12551.3 gi|327311988|ref|YP_004338885.1| - 0.078 12.5 0.6 0.32 10.5 0.4 2.1 1 0 0 1 1 1 0 Poly-beta-hydroxybutyrate polymerase N terminal DUF892 PF05974.7 gi|327311989|ref|YP_004338886.1| - 0.016 14.9 0.1 0.017 14.9 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF892) Hpt PF01627.18 gi|327311989|ref|YP_004338886.1| - 0.019 14.9 0.8 0.021 14.7 0.5 1.1 1 0 0 1 1 1 0 Hpt domain DUF4164 PF13747.1 gi|327311989|ref|YP_004338886.1| - 0.02 15.0 2.1 1.2 9.3 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) HisKA_3 PF07730.8 gi|327311989|ref|YP_004338886.1| - 0.038 14.3 0.1 1.2 9.5 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase Exonuc_VII_S PF02609.11 gi|327311989|ref|YP_004338886.1| - 0.045 13.5 3.6 0.38 10.5 1.0 2.2 2 0 0 2 2 2 0 Exonuclease VII small subunit Methyltrn_RNA_3 PF02598.12 gi|327311990|ref|YP_004338887.1| - 2.7e-50 171.3 0.0 3.4e-50 171.0 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF1296 PF06972.6 gi|327311992|ref|YP_004338889.1| - 0.11 12.5 2.5 0.13 12.2 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1296) VKOR PF07884.9 gi|327311993|ref|YP_004338890.1| - 9.2e-21 74.1 16.6 1.2e-20 73.7 11.5 1.1 1 0 0 1 1 1 1 Vitamin K epoxide reductase family Hexapep PF00132.19 gi|327311994|ref|YP_004338891.1| - 0.0012 18.2 0.4 0.43 10.1 0.0 3.2 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) DEAD_assoc PF08494.6 gi|327311995|ref|YP_004338892.1| - 5.1e-39 133.9 0.1 1.1e-38 132.9 0.1 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|327311995|ref|YP_004338892.1| - 1.1e-33 116.0 0.0 6.5e-33 113.6 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|327311995|ref|YP_004338892.1| - 8.2e-13 48.0 0.0 4e-12 45.8 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|327311995|ref|YP_004338892.1| - 1.8e-06 27.9 0.0 3.5e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|327311995|ref|YP_004338892.1| - 0.011 14.5 0.0 0.021 13.6 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain Zn-ribbon_8 PF09723.5 gi|327311995|ref|YP_004338892.1| - 0.021 14.7 0.1 0.042 13.7 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_25 PF13481.1 gi|327311995|ref|YP_004338892.1| - 0.027 13.8 0.5 0.27 10.5 0.1 2.8 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|327311995|ref|YP_004338892.1| - 0.16 12.0 3.4 8.1 6.6 0.3 4.4 5 1 0 5 5 5 0 AAA domain AAA_10 PF12846.2 gi|327311995|ref|YP_004338892.1| - 0.18 11.2 0.0 21 4.4 0.0 2.7 2 0 0 2 2 2 0 AAA-like domain CBS PF00571.23 gi|327311997|ref|YP_004338894.1| - 6.8e-52 173.0 10.6 3.4e-16 58.7 0.0 4.1 4 0 0 4 4 4 4 CBS domain DUF3659 PF12396.3 gi|327311997|ref|YP_004338894.1| - 0.0099 15.5 1.7 5.7 6.6 0.0 3.7 4 0 0 4 4 4 1 Protein of unknown function (DUF3659) PRC PF05239.11 gi|327311997|ref|YP_004338894.1| - 0.015 15.1 1.2 25 4.8 0.0 3.6 3 0 0 3 3 3 0 PRC-barrel domain Ham1p_like PF01725.11 gi|327311998|ref|YP_004338895.1| - 2.3e-52 177.1 0.0 2.6e-52 176.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Ribosomal_L6 PF00347.18 gi|327311999|ref|YP_004338896.1| - 3.2e-15 56.3 3.6 6.3e-09 36.2 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Thioredoxin PF00085.15 gi|327312000|ref|YP_004338897.1| - 1.2e-09 37.7 0.0 1.5e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|327312000|ref|YP_004338897.1| - 3.5e-06 27.1 1.2 0.0004 20.5 0.8 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|327312000|ref|YP_004338897.1| - 0.00017 21.3 0.0 0.00027 20.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.15 gi|327312000|ref|YP_004338897.1| - 0.0012 18.4 1.0 0.42 10.1 0.0 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|327312000|ref|YP_004338897.1| - 0.0027 17.7 0.3 0.27 11.2 0.1 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_7 PF13899.1 gi|327312000|ref|YP_004338897.1| - 0.068 13.1 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like TraF PF13728.1 gi|327312000|ref|YP_004338897.1| - 0.081 12.3 0.1 0.13 11.7 0.0 1.5 1 1 0 1 1 1 0 F plasmid transfer operon protein Glutaredoxin PF00462.19 gi|327312000|ref|YP_004338897.1| - 0.1 12.5 0.1 0.18 11.8 0.1 1.4 1 1 0 1 1 1 0 Glutaredoxin Pyr_redox_2 PF07992.9 gi|327312001|ref|YP_004338898.1| - 1e-35 123.4 10.7 5.5e-20 72.1 0.1 4.1 3 1 1 4 4 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|327312001|ref|YP_004338898.1| - 8.5e-26 90.1 8.6 1.3e-21 76.8 0.6 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|327312001|ref|YP_004338898.1| - 3.5e-17 62.4 0.9 8.9e-17 61.1 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|327312001|ref|YP_004338898.1| - 3.9e-16 58.8 15.7 1.6e-08 33.8 0.2 4.2 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|327312001|ref|YP_004338898.1| - 1.9e-15 57.4 0.4 9.5e-08 32.3 0.0 3.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|327312001|ref|YP_004338898.1| - 1.1e-07 30.6 10.1 0.026 12.9 0.0 4.2 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|327312001|ref|YP_004338898.1| - 5.4e-07 29.5 3.8 0.0021 18.0 0.2 3.3 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|327312001|ref|YP_004338898.1| - 2.2e-06 26.8 12.9 0.033 13.0 1.5 3.7 2 2 1 4 4 4 3 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|327312001|ref|YP_004338898.1| - 4.2e-06 26.6 6.5 0.75 9.5 0.0 4.1 4 0 0 4 4 4 3 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|327312001|ref|YP_004338898.1| - 4.3e-05 22.5 0.0 0.0011 18.0 0.0 2.3 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.14 gi|327312001|ref|YP_004338898.1| - 0.00046 19.3 0.8 0.0073 15.4 0.0 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|327312001|ref|YP_004338898.1| - 0.0013 17.7 0.6 0.0013 17.7 0.4 2.7 3 0 0 3 3 3 1 Lycopene cyclase protein GFO_IDH_MocA PF01408.17 gi|327312001|ref|YP_004338898.1| - 0.002 18.6 0.2 1 9.8 0.0 2.4 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.1 gi|327312001|ref|YP_004338898.1| - 0.0022 18.2 1.3 1.3 9.3 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding Amino_oxidase PF01593.19 gi|327312001|ref|YP_004338898.1| - 0.0052 15.9 1.2 0.03 13.4 0.0 2.3 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Transketolase_C PF02780.15 gi|327312001|ref|YP_004338898.1| - 0.0079 16.1 0.5 0.035 14.0 0.2 2.2 2 0 0 2 2 2 1 Transketolase, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|327312001|ref|YP_004338898.1| - 0.013 14.8 0.5 0.028 13.7 0.0 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|327312001|ref|YP_004338898.1| - 0.014 15.0 0.3 0.014 15.0 0.2 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|327312001|ref|YP_004338898.1| - 0.017 15.0 0.6 3.1 7.8 0.0 3.2 2 1 0 2 2 2 0 TrkA-N domain F420_oxidored PF03807.12 gi|327312001|ref|YP_004338898.1| - 0.019 15.4 2.1 1.4 9.4 0.0 2.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|327312001|ref|YP_004338898.1| - 0.028 13.9 2.0 0.38 10.3 0.5 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|327312001|ref|YP_004338898.1| - 0.036 13.1 7.0 0.83 8.6 0.4 2.8 2 1 1 3 3 3 0 FAD binding domain FAD_oxidored PF12831.2 gi|327312001|ref|YP_004338898.1| - 0.043 12.8 15.1 0.17 10.9 2.1 4.1 4 1 0 4 4 4 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|327312001|ref|YP_004338898.1| - 0.098 11.4 11.7 0.021 13.6 1.3 3.4 2 1 0 3 3 3 0 FAD binding domain Trp_halogenase PF04820.9 gi|327312001|ref|YP_004338898.1| - 0.54 8.8 9.9 0.05 12.2 0.3 3.2 4 0 0 4 4 4 0 Tryptophan halogenase Ldh_1_N PF00056.18 gi|327312002|ref|YP_004338899.1| - 1.2e-39 135.3 0.2 1.7e-39 134.8 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|327312002|ref|YP_004338899.1| - 1.6e-20 73.5 0.0 3.1e-20 72.6 0.0 1.4 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.11 gi|327312002|ref|YP_004338899.1| - 0.00029 20.2 0.0 0.00062 19.1 0.0 1.5 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.9 gi|327312002|ref|YP_004338899.1| - 0.0072 15.7 1.2 0.014 14.7 0.8 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrbC_Ftype PF09673.5 gi|327312002|ref|YP_004338899.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein DUF3376 PF11856.3 gi|327312003|ref|YP_004338900.1| - 0.037 13.3 0.1 0.043 13.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3376) Peptidase_S49_N PF08496.5 gi|327312003|ref|YP_004338900.1| - 0.36 10.6 4.3 0.41 10.4 3.0 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Thioredoxin_3 PF13192.1 gi|327312004|ref|YP_004338901.1| - 2e-14 53.1 0.2 4.9e-10 39.0 0.1 2.4 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.15 gi|327312004|ref|YP_004338901.1| - 5.3e-09 35.7 0.0 6.3e-07 29.0 0.0 2.4 2 1 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|327312004|ref|YP_004338901.1| - 0.00011 22.3 1.9 0.0018 18.4 0.4 2.8 2 2 0 2 2 2 1 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|327312004|ref|YP_004338901.1| - 0.0073 16.2 1.6 1 9.4 0.1 3.2 4 0 0 4 4 4 1 Glutaredoxin TraF PF13728.1 gi|327312004|ref|YP_004338901.1| - 0.021 14.2 0.0 0.068 12.6 0.0 1.8 2 0 0 2 2 2 0 F plasmid transfer operon protein HyaE PF07449.6 gi|327312004|ref|YP_004338901.1| - 0.037 13.9 0.0 0.063 13.1 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE ABC_transp_aux PF09822.4 gi|327312004|ref|YP_004338901.1| - 0.05 13.0 0.0 1.6 8.1 0.0 2.0 2 0 0 2 2 2 0 ABC-type uncharacterized transport system TrbC_Ftype PF09673.5 gi|327312004|ref|YP_004338901.1| - 0.071 12.7 0.0 0.14 11.7 0.0 1.6 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein DSBA PF01323.15 gi|327312004|ref|YP_004338901.1| - 0.098 12.1 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 DSBA-like thioredoxin domain DsbD PF02683.10 gi|327312005|ref|YP_004338902.1| - 2.9e-19 69.5 18.0 8.3e-19 68.0 12.5 1.8 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|327312005|ref|YP_004338902.1| - 2.6e-07 30.6 27.8 2.6e-07 30.6 19.2 2.9 2 1 1 3 3 3 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_2 PF13098.1 gi|327312005|ref|YP_004338902.1| - 2.3e-05 24.5 0.0 8.2e-05 22.7 0.0 1.9 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|327312005|ref|YP_004338902.1| - 0.00068 19.6 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like YSIRK_signal PF04650.12 gi|327312005|ref|YP_004338902.1| - 3.5 7.2 10.6 9.1 5.9 2.2 3.3 2 0 0 2 2 2 0 YSIRK type signal peptide CENP-X PF09415.5 gi|327312006|ref|YP_004338903.1| - 0.081 12.7 0.6 13 5.7 0.1 2.5 2 0 0 2 2 2 0 CENP-S associating Centromere protein X HTH_33 PF13592.1 gi|327312007|ref|YP_004338904.1| - 0.13 11.7 0.0 0.23 11.0 0.0 1.5 2 0 0 2 2 2 0 Winged helix-turn helix PIN PF01850.16 gi|327312008|ref|YP_004338905.1| - 3.4e-13 49.9 0.8 3.9e-13 49.7 0.6 1.0 1 0 0 1 1 1 1 PIN domain DUF4129 PF13559.1 gi|327312009|ref|YP_004338906.1| - 0.0035 17.2 0.6 0.0094 15.9 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) AAA_3 PF07726.6 gi|327312011|ref|YP_004338908.1| - 6e-66 220.0 0.0 1.1e-65 219.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|327312011|ref|YP_004338908.1| - 5.2e-11 42.4 0.0 1.2e-10 41.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|327312011|ref|YP_004338908.1| - 1.6e-05 25.1 0.0 4.8e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|327312011|ref|YP_004338908.1| - 2.6e-05 23.7 0.0 0.012 15.0 0.0 2.1 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|327312011|ref|YP_004338908.1| - 0.00018 20.4 0.3 0.062 12.0 0.0 2.5 3 0 0 3 3 3 2 MCM2/3/5 family RuvB_N PF05496.7 gi|327312011|ref|YP_004338908.1| - 0.00026 20.1 0.2 0.0031 16.6 0.1 2.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|327312011|ref|YP_004338908.1| - 0.0024 17.0 0.2 0.11 11.5 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|327312011|ref|YP_004338908.1| - 0.032 15.0 0.0 0.055 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF58 PF01882.13 gi|327312012|ref|YP_004338909.1| - 4e-20 71.7 0.0 8.8e-20 70.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 ExoD PF06055.7 gi|327312013|ref|YP_004338910.1| - 0.42 9.6 16.4 0.047 12.7 4.9 2.2 2 0 0 2 2 2 0 Exopolysaccharide synthesis, ExoD Lar_restr_allev PF14354.1 gi|327312014|ref|YP_004338911.1| - 0.065 13.5 0.1 0.077 13.3 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.14 gi|327312014|ref|YP_004338911.1| - 0.087 12.5 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-dskA_traR PF01258.12 gi|327312014|ref|YP_004338911.1| - 0.13 12.0 0.7 3.4 7.4 0.0 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-BED PF02892.10 gi|327312014|ref|YP_004338911.1| - 0.21 11.3 1.3 4.6 7.0 0.0 2.1 1 1 1 2 2 2 0 BED zinc finger HpcH_HpaI PF03328.9 gi|327312015|ref|YP_004338912.1| - 1.8e-33 115.2 0.1 5.6e-32 110.4 0.1 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|327312015|ref|YP_004338912.1| - 1.8e-14 53.3 0.0 2.8e-09 36.2 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold CoA_transf_3 PF02515.12 gi|327312016|ref|YP_004338913.1| - 1.7e-46 157.8 0.0 2.3e-46 157.4 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III AMP-binding PF00501.23 gi|327312017|ref|YP_004338914.1| - 3.1e-87 292.6 0.0 3.7e-87 292.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|327312017|ref|YP_004338914.1| - 2.4e-21 76.4 0.9 6.8e-21 75.0 0.6 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MFS_1 PF07690.11 gi|327312018|ref|YP_004338915.1| - 1.8e-25 89.3 63.6 3.3e-17 62.2 27.9 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|327312018|ref|YP_004338915.1| - 4e-18 65.2 35.5 5.7e-15 54.8 8.5 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|327312018|ref|YP_004338915.1| - 0.00045 19.9 13.2 0.024 14.4 0.3 4.2 4 0 0 4 4 4 3 MFS_1 like family Methyltransf_11 PF08241.7 gi|327312019|ref|YP_004338916.1| - 2e-10 41.0 0.0 4.2e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|327312019|ref|YP_004338916.1| - 3.7e-08 33.2 0.0 4.9e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|327312019|ref|YP_004338916.1| - 0.0015 18.8 0.0 0.0082 16.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|327312019|ref|YP_004338916.1| - 0.036 14.5 0.0 0.22 12.0 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain HCV_NS4a PF01006.15 gi|327312019|ref|YP_004338916.1| - 0.083 12.4 0.2 0.18 11.3 0.1 1.6 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Radical_SAM PF04055.16 gi|327312020|ref|YP_004338917.1| - 4.5e-20 72.4 0.0 9.5e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|327312020|ref|YP_004338917.1| - 1.2e-05 25.2 0.4 4.2e-05 23.4 0.0 2.2 3 0 0 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|327312020|ref|YP_004338917.1| - 0.0012 18.9 0.7 0.022 14.8 0.0 2.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Staph_haemo PF05480.6 gi|327312021|ref|YP_004338918.1| - 0.069 12.8 0.1 0.2 11.3 0.1 1.7 1 0 0 1 1 1 0 Staphylococcus haemolytic protein UPF0051 PF01458.12 gi|327312022|ref|YP_004338919.1| - 2.3e-25 89.3 0.0 3.3e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) KH_5 PF13184.1 gi|327312022|ref|YP_004338919.1| - 0.083 12.7 0.1 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 NusA-like KH domain NUDIX PF00293.23 gi|327312023|ref|YP_004338920.1| - 8.6e-19 67.5 0.1 1.1e-18 67.1 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain DBC1 PF14443.1 gi|327312023|ref|YP_004338920.1| - 0.012 15.1 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 DBC1 Bacteriocin_IIi PF11758.3 gi|327312023|ref|YP_004338920.1| - 0.022 14.3 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Aureocin-like type II bacteriocin Hemerythrin PF01814.18 gi|327312024|ref|YP_004338921.1| - 2.4e-05 24.4 4.3 0.0019 18.3 2.7 2.0 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain PG_binding_2 PF08823.6 gi|327312025|ref|YP_004338922.1| - 0.017 15.1 0.1 0.044 13.8 0.0 1.7 2 0 0 2 2 2 0 Putative peptidoglycan binding domain Amidohydro_2 PF04909.9 gi|327312025|ref|YP_004338922.1| - 0.044 13.3 0.2 0.049 13.1 0.2 1.1 1 0 0 1 1 1 0 Amidohydrolase DUF2236 PF09995.4 gi|327312025|ref|YP_004338922.1| - 0.21 10.8 1.9 0.51 9.5 1.3 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2236) Hemerythrin PF01814.18 gi|327312025|ref|YP_004338922.1| - 0.22 11.7 1.5 0.45 10.6 0.8 1.7 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Glyco_hydro_57 PF03065.10 gi|327312026|ref|YP_004338923.1| - 5.5e-70 236.0 0.0 2.1e-69 234.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|327312026|ref|YP_004338923.1| - 7.5e-05 22.3 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF217 PF02697.9 gi|327312027|ref|YP_004338924.1| - 0.034 14.4 0.3 0.044 14.0 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 PP2C_C PF07830.8 gi|327312027|ref|YP_004338924.1| - 0.034 14.2 0.7 0.045 13.8 0.5 1.1 1 0 0 1 1 1 0 Protein serine/threonine phosphatase 2C, C-terminal domain FdhE PF04216.7 gi|327312027|ref|YP_004338924.1| - 0.077 12.7 0.4 0.074 12.7 0.2 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DUF3268 PF11672.3 gi|327312027|ref|YP_004338924.1| - 0.16 12.0 0.8 0.25 11.4 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3268) GED PF02212.13 gi|327312027|ref|YP_004338924.1| - 0.18 11.7 1.8 0.25 11.2 1.2 1.2 1 0 0 1 1 1 0 Dynamin GTPase effector domain PIN PF01850.16 gi|327312028|ref|YP_004338925.1| - 2.1e-10 40.9 0.4 3e-10 40.4 0.3 1.2 1 0 0 1 1 1 1 PIN domain Phosphorylase PF00343.15 gi|327312029|ref|YP_004338926.1| - 3e-09 35.3 0.0 6.1e-09 34.3 0.0 1.4 2 0 0 2 2 2 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.15 gi|327312029|ref|YP_004338926.1| - 4e-09 36.1 0.0 6.2e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|327312029|ref|YP_004338926.1| - 0.00018 21.6 0.0 0.00043 20.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF4298 PF14131.1 gi|327312029|ref|YP_004338926.1| - 0.083 12.7 1.9 0.18 11.7 1.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) AFOR_C PF01314.13 gi|327312030|ref|YP_004338927.1| - 5.3e-125 417.0 0.0 6.4e-125 416.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|327312030|ref|YP_004338927.1| - 4.6e-78 261.1 0.8 7.7e-78 260.4 0.5 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Lactamase_B_2 PF12706.2 gi|327312031|ref|YP_004338928.1| - 2.7e-12 46.6 0.0 4.6e-11 42.6 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|327312031|ref|YP_004338928.1| - 6.7e-10 38.9 2.3 3.8e-09 36.4 1.6 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|327312031|ref|YP_004338928.1| - 9.8e-08 31.8 0.0 1.5e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Isochorismatase PF00857.15 gi|327312032|ref|YP_004338929.1| - 2.6e-42 144.6 0.0 3e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family HAD_2 PF13419.1 gi|327312033|ref|YP_004338930.1| - 3.6e-26 92.4 0.0 4.4e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|327312033|ref|YP_004338930.1| - 3.7e-05 24.2 0.0 0.0005 20.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|327312033|ref|YP_004338930.1| - 0.0011 18.6 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Lactamase_B PF00753.22 gi|327312034|ref|YP_004338931.1| - 6.5e-21 74.8 3.1 1.3e-20 73.8 2.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|327312034|ref|YP_004338931.1| - 5e-11 42.7 0.0 2e-10 40.8 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|327312034|ref|YP_004338931.1| - 2.6e-08 33.5 0.2 2e-07 30.6 0.1 2.2 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|327312034|ref|YP_004338931.1| - 0.0002 21.3 0.0 0.00037 20.5 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Hydrolase_4 PF12146.3 gi|327312034|ref|YP_004338931.1| - 0.00082 19.1 0.1 0.0041 16.9 0.0 2.1 2 0 0 2 2 2 1 Putative lysophospholipase LytR_C PF13399.1 gi|327312034|ref|YP_004338931.1| - 0.063 13.6 0.0 3.5 8.0 0.0 2.3 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator CN_hydrolase PF00795.17 gi|327312035|ref|YP_004338932.1| - 2.6e-10 39.9 0.0 4.9e-10 39.0 0.0 1.5 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase ELFV_dehydrog PF00208.16 gi|327312036|ref|YP_004338933.1| - 2.4e-65 220.5 0.4 3.1e-65 220.1 0.3 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|327312036|ref|YP_004338933.1| - 7.1e-46 155.0 0.0 1.2e-45 154.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|327312036|ref|YP_004338933.1| - 0.0025 17.0 0.1 0.0046 16.1 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain S4 PF01479.20 gi|327312036|ref|YP_004338933.1| - 0.035 13.5 0.1 0.37 10.2 0.0 2.5 2 0 0 2 2 2 0 S4 domain AdoHcyase_NAD PF00670.16 gi|327312036|ref|YP_004338933.1| - 0.042 13.6 0.1 0.078 12.8 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Dimerisation PF08100.6 gi|327312036|ref|YP_004338933.1| - 0.1 12.4 0.0 0.7 9.7 0.0 2.3 2 0 0 2 2 2 0 Dimerisation domain MFS_1 PF07690.11 gi|327312037|ref|YP_004338934.1| - 5.2e-41 140.5 55.7 2.4e-29 102.1 19.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|327312037|ref|YP_004338934.1| - 1e-37 129.7 19.6 2.9e-37 128.3 13.6 1.6 1 1 0 1 1 1 1 Sugar (and other) transporter Sugar_tr PF00083.19 gi|327312038|ref|YP_004338935.1| - 1.1e-32 113.1 38.8 4.9e-30 104.4 26.9 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|327312038|ref|YP_004338935.1| - 2.2e-21 75.9 68.9 4.1e-14 52.0 25.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily NDK PF00334.14 gi|327312040|ref|YP_004338937.1| - 3.6e-44 149.8 0.0 1.2e-24 86.6 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase Shufflon_N PF04917.7 gi|327312040|ref|YP_004338937.1| - 0.023 13.8 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial shufflon protein, N-terminal constant region zinc_ribbon_2 PF13240.1 gi|327312041|ref|YP_004338938.1| - 3.1e-06 26.4 2.1 7e-06 25.3 1.5 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327312041|ref|YP_004338938.1| - 6.9e-06 25.0 2.1 1.4e-05 24.1 1.5 1.5 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327312041|ref|YP_004338938.1| - 1.8e-05 23.9 1.6 2.5e-05 23.5 0.6 1.6 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|327312041|ref|YP_004338938.1| - 0.0014 18.2 0.6 0.0068 16.0 0.4 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|327312041|ref|YP_004338938.1| - 0.0019 17.7 0.6 0.01 15.3 0.4 2.0 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|327312041|ref|YP_004338938.1| - 0.011 15.4 0.2 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-Di19 PF05605.7 gi|327312041|ref|YP_004338938.1| - 0.024 14.7 1.5 4.4 7.4 0.2 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding PyrI_C PF02748.10 gi|327312041|ref|YP_004338938.1| - 0.035 13.5 2.2 1.7 8.1 0.0 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-CHCC PF10276.4 gi|327312041|ref|YP_004338938.1| - 0.041 13.7 5.4 1.7 8.5 0.4 2.3 2 0 0 2 2 2 0 Zinc-finger domain UPF0547 PF10571.4 gi|327312041|ref|YP_004338938.1| - 0.086 12.5 1.6 4.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_S27e PF01667.12 gi|327312041|ref|YP_004338938.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 Cys_rich_CPXG PF14255.1 gi|327312041|ref|YP_004338938.1| - 0.14 11.9 5.2 2.7 7.8 0.4 2.9 3 0 0 3 3 3 0 Cysteine-rich CPXCG PhnA_Zn_Ribbon PF08274.7 gi|327312041|ref|YP_004338938.1| - 0.17 11.6 2.8 0.39 10.5 1.9 1.6 1 0 0 1 1 1 0 PhnA Zinc-Ribbon DNA_ligase_ZBD PF03119.11 gi|327312041|ref|YP_004338938.1| - 0.24 11.1 1.8 14 5.4 0.1 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.1 gi|327312041|ref|YP_004338938.1| - 0.25 11.1 0.8 0.48 10.1 0.6 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-BED PF02892.10 gi|327312041|ref|YP_004338938.1| - 0.26 11.0 0.8 14 5.5 0.1 2.3 1 1 1 2 2 2 0 BED zinc finger TraT PF05818.7 gi|327312041|ref|YP_004338938.1| - 0.64 9.3 3.0 0.92 8.8 2.1 1.2 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Zn_Tnp_IS1595 PF12760.2 gi|327312041|ref|YP_004338938.1| - 1.7 8.5 3.9 23 4.8 0.1 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain p12I PF12233.3 gi|327312041|ref|YP_004338938.1| - 7.5 6.9 6.5 13 6.1 1.6 2.3 1 1 1 2 2 2 0 Human adult T cell leukemia/lymphoma virus protein zinc_ribbon_2 PF13240.1 gi|327312042|ref|YP_004338939.1| - 0.0036 16.7 2.0 0.015 14.8 1.2 1.9 1 1 1 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|327312042|ref|YP_004338939.1| - 0.0056 15.8 1.6 0.012 14.7 1.1 1.6 1 1 0 1 1 1 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|327312042|ref|YP_004338939.1| - 0.031 13.7 0.5 0.25 10.8 0.6 2.0 1 1 1 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|327312042|ref|YP_004338939.1| - 0.036 13.8 0.1 0.06 13.1 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|327312042|ref|YP_004338939.1| - 0.15 11.4 0.7 8.6 5.7 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PyrI_C PF02748.10 gi|327312042|ref|YP_004338939.1| - 0.2 11.1 2.3 6.8 6.2 0.1 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-CHCC PF10276.4 gi|327312042|ref|YP_004338939.1| - 2.2 8.1 6.3 1.9 8.4 0.2 2.4 1 1 1 2 2 2 0 Zinc-finger domain Oxidored_q1 PF00361.15 gi|327312043|ref|YP_004338940.1| - 4.9e-16 58.8 20.2 4.9e-16 58.8 14.0 3.1 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|327312044|ref|YP_004338941.1| - 3.8e-43 147.7 28.1 8.5e-43 146.5 12.3 3.1 3 0 0 3 3 3 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|327312044|ref|YP_004338941.1| - 0.00026 20.4 4.0 0.001 18.6 2.1 2.5 1 1 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|327312045|ref|YP_004338942.1| - 1.8e-48 165.1 25.1 1.8e-48 165.1 17.4 2.8 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|327312045|ref|YP_004338942.1| - 0.0043 16.5 0.2 0.018 14.5 0.1 2.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|327312046|ref|YP_004338943.1| - 2.2e-10 40.0 3.6 2.5e-10 39.8 2.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BCLP PF12304.3 gi|327312046|ref|YP_004338943.1| - 0.0015 17.9 7.6 0.0018 17.7 5.3 1.1 1 0 0 1 1 1 1 Beta-casein like protein DUF1275 PF06912.6 gi|327312046|ref|YP_004338943.1| - 0.17 11.0 8.2 0.2 10.8 5.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) Tmemb_14 PF03647.8 gi|327312046|ref|YP_004338943.1| - 0.4 11.1 8.0 0.51 10.7 5.6 1.1 1 0 0 1 1 1 0 Transmembrane proteins 14C DUF1427 PF07235.6 gi|327312046|ref|YP_004338943.1| - 1.1 9.4 8.6 0.26 11.3 3.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1427) Chordopox_A13L PF05961.6 gi|327312046|ref|YP_004338943.1| - 1.2 9.1 0.0 1.2 9.1 0.0 2.7 2 1 1 3 3 3 0 Chordopoxvirus A13L protein YtpI PF14007.1 gi|327312046|ref|YP_004338943.1| - 1.9 8.4 7.6 0.69 9.8 3.1 1.7 2 0 0 2 2 2 0 YtpI-like protein BphX PF06139.7 gi|327312046|ref|YP_004338943.1| - 2.3 7.8 11.6 6.1 6.4 8.0 1.6 1 1 0 1 1 1 0 BphX-like DUF4401 PF14351.1 gi|327312046|ref|YP_004338943.1| - 2.6 6.9 15.2 3 6.7 10.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) DUF4418 PF14387.1 gi|327312046|ref|YP_004338943.1| - 3.4 7.4 10.7 6.3 6.5 7.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) NfeD PF01957.13 gi|327312046|ref|YP_004338943.1| - 5.2 7.1 9.4 7.7 6.6 6.5 1.3 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Oxidored_q3 PF00499.15 gi|327312047|ref|YP_004338944.1| - 2.6e-05 24.0 16.7 6.4e-05 22.7 11.6 1.6 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HTH_10 PF04967.7 gi|327312047|ref|YP_004338944.1| - 0.051 13.1 0.1 0.12 11.9 0.1 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Imp-YgjV PF10688.4 gi|327312047|ref|YP_004338944.1| - 0.24 10.7 12.2 0.017 14.5 5.3 1.4 2 0 0 2 2 2 0 Bacterial inner membrane protein OapA_N PF08525.6 gi|327312047|ref|YP_004338944.1| - 0.32 10.8 0.2 0.32 10.8 0.1 4.6 5 1 1 6 6 6 0 Opacity-associated protein A N-terminal motif CTP_transf_1 PF01148.15 gi|327312047|ref|YP_004338944.1| - 0.65 9.5 12.5 3.1 7.3 8.7 1.9 1 1 0 1 1 1 0 Cytidylyltransferase family RAMP4 PF06624.7 gi|327312047|ref|YP_004338944.1| - 1.1 8.8 4.0 1.9 8.1 2.8 1.4 1 0 0 1 1 1 0 Ribosome associated membrane protein RAMP4 DUF4234 PF14018.1 gi|327312047|ref|YP_004338944.1| - 6.1 6.6 6.4 0.77 9.5 0.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) DUF4131 PF13567.1 gi|327312047|ref|YP_004338944.1| - 7.9 5.8 17.2 2.4e+02 1.0 11.8 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DPM2 PF07297.7 gi|327312047|ref|YP_004338944.1| - 9.7 6.5 12.4 0.16 12.2 2.2 2.5 2 1 1 3 3 3 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) PaREP1 PF05942.6 gi|327312048|ref|YP_004338945.1| - 1.4e-34 118.4 3.5 1.4e-34 118.4 2.4 2.0 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Fer4 PF00037.22 gi|327312049|ref|YP_004338946.1| - 1.3e-14 53.0 11.6 2.3e-07 30.1 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|327312049|ref|YP_004338946.1| - 6.7e-12 45.6 22.5 3e-09 37.1 8.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|327312049|ref|YP_004338946.1| - 1.2e-11 44.1 21.9 5.7e-08 32.4 9.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|327312049|ref|YP_004338946.1| - 2.5e-10 39.7 14.7 2.1e-05 24.1 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|327312049|ref|YP_004338946.1| - 3.7e-10 40.3 5.6 8.2e-05 23.2 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|327312049|ref|YP_004338946.1| - 1.3e-09 38.1 33.3 4.9e-06 26.7 9.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|327312049|ref|YP_004338946.1| - 6.2e-09 35.7 1.5 0.00072 19.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|327312049|ref|YP_004338946.1| - 2.3e-08 33.7 3.8 0.00021 21.0 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|327312049|ref|YP_004338946.1| - 8.1e-08 31.7 13.6 4.7e-05 23.0 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|327312049|ref|YP_004338946.1| - 1.9e-07 30.8 12.3 0.00065 19.8 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|327312049|ref|YP_004338946.1| - 2.3e-07 31.0 4.1 0.0018 18.5 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|327312049|ref|YP_004338946.1| - 0.00021 21.8 5.3 0.094 13.2 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|327312049|ref|YP_004338946.1| - 0.00034 20.9 16.7 0.022 15.2 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|327312049|ref|YP_004338946.1| - 0.015 15.7 11.0 0.51 10.7 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|327312049|ref|YP_004338946.1| - 0.016 14.8 3.5 0.84 9.2 0.1 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.1 gi|327312049|ref|YP_004338946.1| - 0.021 15.2 15.1 0.037 14.4 1.7 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain NADHdh PF00146.16 gi|327312050|ref|YP_004338947.1| - 9.5e-42 143.1 20.9 1.2e-41 142.8 14.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF3473 PF11959.3 gi|327312050|ref|YP_004338947.1| - 0.017 14.5 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3473) Complex1_49kDa PF00346.14 gi|327312051|ref|YP_004338948.1| - 1.8e-49 168.1 0.0 2.4e-49 167.8 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AAA_assoc_C PF09821.4 gi|327312052|ref|YP_004338949.1| - 2.3e-07 31.1 0.7 2.6e-07 30.9 0.1 1.4 2 0 0 2 2 2 1 C-terminal AAA-associated domain HTH_45 PF14947.1 gi|327312052|ref|YP_004338949.1| - 0.022 14.5 0.0 0.025 14.4 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Arch_ATPase PF01637.13 gi|327312054|ref|YP_004338951.1| - 1.1e-25 90.7 0.0 2.6e-25 89.5 0.0 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|327312054|ref|YP_004338951.1| - 2.5e-10 40.3 0.0 1e-09 38.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|327312054|ref|YP_004338951.1| - 3.2e-07 30.5 0.0 7.3e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|327312054|ref|YP_004338951.1| - 3.1e-05 24.0 0.8 0.004 17.1 0.2 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|327312054|ref|YP_004338951.1| - 0.00066 19.8 0.0 0.0013 18.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|327312054|ref|YP_004338951.1| - 0.018 15.8 0.0 0.26 12.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF1383 PF07134.6 gi|327312054|ref|YP_004338951.1| - 0.18 10.7 0.0 0.3 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1383) DUF504 PF04457.7 gi|327312055|ref|YP_004338952.1| - 1.3e-15 57.2 0.1 1.7e-15 56.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF504) Macro PF01661.16 gi|327312056|ref|YP_004338953.1| - 1.9e-35 121.2 0.1 2.7e-35 120.8 0.1 1.2 1 0 0 1 1 1 1 Macro domain DUF466 PF04328.8 gi|327312056|ref|YP_004338953.1| - 0.084 12.7 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF466) DUF1626 PF07788.6 gi|327312057|ref|YP_004338954.1| - 2.9e-28 97.4 1.9 4.9e-28 96.7 0.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|327312057|ref|YP_004338954.1| - 9e-28 95.8 37.0 5.6e-18 64.4 6.6 4.9 1 1 2 3 3 3 3 Protein of unknown function (DUF3782) DUF1640 PF07798.6 gi|327312057|ref|YP_004338954.1| - 0.0012 18.9 12.6 0.095 12.7 0.9 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1640) DUF2345 PF10106.4 gi|327312057|ref|YP_004338954.1| - 0.0021 17.6 0.2 0.0037 16.8 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2345) TusA PF01206.12 gi|327312057|ref|YP_004338954.1| - 0.019 14.5 3.0 1.1 8.9 0.4 4.0 3 1 1 4 4 4 0 Sulfurtransferase TusA LemA PF04011.7 gi|327312057|ref|YP_004338954.1| - 0.11 11.6 5.1 0.1 11.6 2.7 1.5 1 1 0 1 1 1 0 LemA family Matrilin_ccoil PF10393.4 gi|327312057|ref|YP_004338954.1| - 0.11 11.8 6.0 0.083 12.2 1.1 2.5 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Glyco_transf_28 PF03033.15 gi|327312057|ref|YP_004338954.1| - 0.21 11.3 0.7 6.1 6.6 0.2 3.1 1 1 1 2 2 2 0 Glycosyltransferase family 28 N-terminal domain ETC_C1_NDUFA4 PF04800.7 gi|327312057|ref|YP_004338954.1| - 0.32 10.8 2.7 8.8 6.2 0.1 2.6 1 1 2 3 3 3 0 ETC complex I subunit conserved region DUF3685 PF12452.3 gi|327312057|ref|YP_004338954.1| - 0.54 9.3 2.6 1.3 8.1 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3685) EFhand_Ca_insen PF08726.5 gi|327312057|ref|YP_004338954.1| - 1.6 8.7 9.9 23 5.0 0.5 3.9 1 1 2 3 3 3 0 Ca2+ insensitive EF hand DltD_M PF04918.7 gi|327312057|ref|YP_004338954.1| - 8.4 6.5 8.8 9.4 6.4 4.5 1.9 1 1 1 2 2 2 0 DltD central region DUF1664 PF07889.7 gi|327312057|ref|YP_004338954.1| - 9.2 6.0 7.3 13 5.6 3.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Sua5_yciO_yrdC PF01300.13 gi|327312058|ref|YP_004338955.1| - 2.6e-46 157.1 0.0 4e-46 156.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|327312058|ref|YP_004338955.1| - 3.4e-24 83.9 8.3 5e-13 48.2 0.4 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|327312058|ref|YP_004338955.1| - 1.2e-17 63.7 0.1 4.2e-17 62.0 0.0 2.0 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|327312058|ref|YP_004338955.1| - 1.1e-05 25.0 0.2 0.0059 16.1 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family zf-C4_ClpX PF06689.8 gi|327312058|ref|YP_004338955.1| - 0.28 10.7 3.2 9.7 5.8 0.1 2.4 2 0 0 2 2 2 0 ClpX C4-type zinc finger NicO PF03824.11 gi|327312060|ref|YP_004338957.1| - 2.5e-85 286.2 14.2 3.9e-85 285.5 9.8 1.3 1 0 0 1 1 1 1 High-affinity nickel-transport protein HypD PF01924.11 gi|327312061|ref|YP_004338958.1| - 1.5e-120 402.1 0.0 1.8e-120 401.9 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.1 gi|327312061|ref|YP_004338958.1| - 0.11 12.3 0.0 0.32 10.8 0.0 1.8 1 0 0 1 1 1 0 zf-RING of BARD1-type protein HupF_HypC PF01455.13 gi|327312062|ref|YP_004338959.1| - 1.3e-07 31.4 1.1 1.3e-07 31.4 0.1 1.5 2 0 0 2 2 2 1 HupF/HypC family UPF0175 PF03683.8 gi|327312065|ref|YP_004338962.1| - 0.0054 16.1 0.3 0.0081 15.6 0.2 1.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) CDC37_C PF08564.5 gi|327312065|ref|YP_004338962.1| - 0.024 14.4 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Cdc37 C terminal domain QRPTase_C PF01729.14 gi|327312066|ref|YP_004338963.1| - 9.2e-23 80.5 0.1 1e-22 80.4 0.1 1.0 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.12 gi|327312066|ref|YP_004338963.1| - 0.00036 19.8 0.3 0.0057 15.9 0.1 1.9 1 1 1 2 2 2 1 PcrB family CutC PF03932.9 gi|327312066|ref|YP_004338963.1| - 0.02 14.1 0.1 0.029 13.6 0.1 1.3 1 1 0 1 1 1 0 CutC family TMP-TENI PF02581.12 gi|327312066|ref|YP_004338963.1| - 0.042 12.9 0.2 0.094 11.8 0.1 1.7 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI Response_reg PF00072.19 gi|327312066|ref|YP_004338963.1| - 0.12 12.4 0.0 0.23 11.4 0.0 1.5 2 0 0 2 2 2 0 Response regulator receiver domain HEPN PF05168.9 gi|327312067|ref|YP_004338964.1| - 2.2e-11 43.6 0.0 2.2e-11 43.6 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|327312068|ref|YP_004338965.1| - 3.2e-08 33.7 0.1 4e-08 33.4 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|327312068|ref|YP_004338965.1| - 0.051 13.1 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 CbiM PF01891.11 gi|327312069|ref|YP_004338966.1| - 2.8e-61 206.6 19.3 3.2e-61 206.5 13.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|327312069|ref|YP_004338966.1| - 0.0066 16.3 20.5 0.016 15.1 14.2 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) PDGLE PF13190.1 gi|327312070|ref|YP_004338967.1| - 2.1e-09 36.9 0.2 2.6e-09 36.6 0.1 1.1 1 0 0 1 1 1 1 PDGLE domain FtsX PF02687.16 gi|327312070|ref|YP_004338967.1| - 0.13 12.0 1.8 6.4 6.5 0.1 2.1 2 0 0 2 2 2 0 FtsX-like permease family DUF2269 PF10027.4 gi|327312070|ref|YP_004338967.1| - 0.26 11.0 0.2 0.26 11.0 0.1 1.8 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2269) ABC2_membrane_4 PF12730.2 gi|327312070|ref|YP_004338967.1| - 0.52 9.4 4.0 1 8.4 2.8 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein CbiQ PF02361.11 gi|327312071|ref|YP_004338968.1| - 0.14 11.6 3.6 1.2 8.6 2.5 2.0 1 1 0 1 1 1 0 Cobalt transport protein ABC_tran PF00005.22 gi|327312072|ref|YP_004338969.1| - 1.1e-28 100.2 0.0 1.4e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|327312072|ref|YP_004338969.1| - 1e-18 68.3 0.1 2e-11 44.4 0.0 2.0 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|327312072|ref|YP_004338969.1| - 5.8e-08 32.5 0.1 0.061 12.7 0.0 3.0 2 1 1 3 3 3 2 AAA-like domain SMC_N PF02463.14 gi|327312072|ref|YP_004338969.1| - 8.9e-08 31.6 0.0 1.7e-06 27.4 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|327312072|ref|YP_004338969.1| - 8e-05 22.7 0.2 0.00049 20.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|327312072|ref|YP_004338969.1| - 8.8e-05 22.3 0.0 0.00077 19.3 0.0 2.4 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|327312072|ref|YP_004338969.1| - 0.00022 21.2 0.1 0.00056 19.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|327312072|ref|YP_004338969.1| - 0.00027 20.4 1.4 0.0024 17.2 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|327312072|ref|YP_004338969.1| - 0.001 18.9 0.0 0.0065 16.3 0.0 1.9 1 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|327312072|ref|YP_004338969.1| - 0.0033 17.7 0.0 0.075 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|327312072|ref|YP_004338969.1| - 0.0043 16.7 0.1 0.011 15.3 0.1 1.7 1 1 0 1 1 1 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|327312072|ref|YP_004338969.1| - 0.0054 16.1 0.9 1.1 8.6 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|327312072|ref|YP_004338969.1| - 0.0062 17.3 0.7 0.014 16.1 0.5 1.9 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|327312072|ref|YP_004338969.1| - 0.0071 15.8 0.0 0.052 13.0 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|327312072|ref|YP_004338969.1| - 0.01 15.5 0.1 0.033 13.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|327312072|ref|YP_004338969.1| - 0.012 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|327312072|ref|YP_004338969.1| - 0.014 15.7 0.0 0.022 15.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|327312072|ref|YP_004338969.1| - 0.02 13.9 0.0 0.072 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|327312072|ref|YP_004338969.1| - 0.024 14.2 0.0 0.11 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|327312072|ref|YP_004338969.1| - 0.033 13.1 0.0 0.051 12.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|327312072|ref|YP_004338969.1| - 0.033 14.4 0.3 0.12 12.6 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|327312072|ref|YP_004338969.1| - 0.047 13.2 0.3 0.1 12.1 0.2 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|327312072|ref|YP_004338969.1| - 0.071 12.7 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|327312072|ref|YP_004338969.1| - 0.12 12.1 0.1 0.39 10.4 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|327312072|ref|YP_004338969.1| - 0.16 11.9 0.4 1.3 8.9 0.2 2.2 1 1 1 2 2 2 0 AAA domain PaREP1 PF05942.6 gi|327312073|ref|YP_004338970.1| - 1.1e-34 118.6 5.2 1.6e-34 118.2 3.6 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Gene66 PF02053.10 gi|327312073|ref|YP_004338970.1| - 0.035 13.5 0.1 0.061 12.7 0.1 1.3 1 0 0 1 1 1 0 Gene 66 (IR5) protein DUF2959 PF11172.3 gi|327312075|ref|YP_004338972.1| - 0.057 13.1 0.1 6.7 6.4 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) HycI PF01750.13 gi|327312076|ref|YP_004338973.1| - 3.1e-07 30.0 0.0 6.9e-07 28.8 0.0 1.5 1 1 1 2 2 2 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.14 gi|327312077|ref|YP_004338974.1| - 2.6e-45 155.1 0.1 2.1e-25 89.4 0.0 3.2 2 2 1 3 3 3 2 Nickel-dependent hydrogenase Cytochrom_B_N PF00033.14 gi|327312078|ref|YP_004338975.1| - 5.4e-07 29.1 18.3 5.4e-07 29.1 12.7 2.1 2 2 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|327312078|ref|YP_004338975.1| - 1.3e-05 24.6 43.3 0.00037 19.9 15.1 2.3 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 PepSY_TM_3 PF13706.1 gi|327312078|ref|YP_004338975.1| - 0.094 12.1 10.2 0.076 12.4 2.1 3.3 2 0 0 2 2 2 0 PepSY-associated TM helix DUF2107 PF09880.4 gi|327312078|ref|YP_004338975.1| - 2.8 7.9 7.4 0.11 12.4 0.5 2.2 3 0 0 3 3 3 0 Predicted membrane protein (DUF2107) NiFe_hyd_SSU_C PF14720.1 gi|327312079|ref|YP_004338976.1| - 2e-24 85.4 2.0 3.4e-24 84.6 1.4 1.4 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.17 gi|327312079|ref|YP_004338976.1| - 5.5e-18 64.8 0.0 1.6e-17 63.3 0.0 1.9 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.4 gi|327312079|ref|YP_004338976.1| - 0.0064 16.3 1.8 0.0064 16.3 1.3 3.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence HTH_24 PF13412.1 gi|327312080|ref|YP_004338977.1| - 0.00016 21.0 0.1 0.005 16.1 0.0 3.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HemN_C PF06969.11 gi|327312080|ref|YP_004338977.1| - 0.00077 19.4 0.0 0.0051 16.8 0.0 2.2 2 0 0 2 2 2 1 HemN C-terminal domain HTH_IclR PF09339.5 gi|327312080|ref|YP_004338977.1| - 0.0026 17.3 0.0 0.0077 15.7 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|327312080|ref|YP_004338977.1| - 0.013 15.2 0.1 0.052 13.2 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|327312080|ref|YP_004338977.1| - 0.04 13.7 0.1 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|327312080|ref|YP_004338977.1| - 0.059 13.7 0.1 0.17 12.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|327312080|ref|YP_004338977.1| - 0.085 12.7 0.0 0.44 10.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1815 PF08844.5 gi|327312080|ref|YP_004338977.1| - 0.094 12.3 0.2 15 5.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1815) Rrf2 PF02082.15 gi|327312080|ref|YP_004338977.1| - 0.12 12.5 0.0 9.6 6.4 0.0 2.3 1 1 1 2 2 2 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|327312080|ref|YP_004338977.1| - 0.14 12.1 0.0 0.39 10.6 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HycI PF01750.13 gi|327312081|ref|YP_004338978.1| - 0.013 15.0 0.0 1.9 8.0 0.0 2.0 2 0 0 2 2 2 0 Hydrogenase maturation protease NikR_C PF08753.6 gi|327312083|ref|YP_004338980.1| - 9.4e-22 76.7 0.4 1.3e-21 76.2 0.3 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain EXOSC1 PF10447.4 gi|327312083|ref|YP_004338980.1| - 0.028 14.3 0.7 0.044 13.7 0.5 1.4 1 1 0 1 1 1 0 Exosome component EXOSC1/CSL4 DUF1778 PF08681.6 gi|327312083|ref|YP_004338980.1| - 0.03 14.1 0.4 3.4 7.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1778) DUF2042 PF09743.4 gi|327312083|ref|YP_004338980.1| - 0.063 12.5 0.1 0.13 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) HypA PF01155.14 gi|327312084|ref|YP_004338981.1| - 3.4e-23 81.4 0.0 3.9e-23 81.3 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|327312084|ref|YP_004338981.1| - 0.00033 20.4 1.4 0.035 13.9 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin zf-ISL3 PF14690.1 gi|327312084|ref|YP_004338981.1| - 0.00044 20.2 2.5 0.19 11.7 0.5 2.3 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|327312084|ref|YP_004338981.1| - 0.0032 17.3 3.6 1.1 9.3 0.0 2.3 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|327312084|ref|YP_004338981.1| - 0.0066 16.2 1.1 1.8 8.4 0.0 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|327312084|ref|YP_004338981.1| - 0.0099 15.1 0.2 1.9 7.8 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|327312084|ref|YP_004338981.1| - 0.01 15.0 0.6 0.37 10.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|327312084|ref|YP_004338981.1| - 0.035 13.6 0.4 2.7 7.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|327312084|ref|YP_004338981.1| - 0.052 13.0 4.8 2.9 7.4 0.1 2.3 2 0 0 2 2 2 0 InsA N-terminal domain RNA_POL_M_15KD PF02150.11 gi|327312084|ref|YP_004338981.1| - 0.059 13.0 1.3 0.69 9.6 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|327312084|ref|YP_004338981.1| - 0.062 12.9 0.2 17 5.1 0.1 2.7 3 0 0 3 3 3 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|327312084|ref|YP_004338981.1| - 0.07 12.7 1.2 7.5 6.2 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|327312084|ref|YP_004338981.1| - 0.13 12.2 3.6 1.4 8.9 0.3 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.4 gi|327312084|ref|YP_004338981.1| - 0.16 11.6 5.7 1.1 9.0 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|327312084|ref|YP_004338981.1| - 0.22 10.9 2.7 11 5.5 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|327312084|ref|YP_004338981.1| - 0.29 10.8 1.3 8.7 6.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|327312084|ref|YP_004338981.1| - 0.29 10.7 1.6 7.1 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|327312084|ref|YP_004338981.1| - 0.33 10.6 2.8 3.7 7.3 0.4 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF35_N PF12172.3 gi|327312084|ref|YP_004338981.1| - 0.41 10.6 8.5 2.3 8.2 0.1 3.3 4 0 0 4 4 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-HIT PF04438.11 gi|327312084|ref|YP_004338981.1| - 0.96 9.1 5.7 8.3 6.1 0.8 2.2 2 0 0 2 2 2 0 HIT zinc finger CbiA PF01656.18 gi|327312085|ref|YP_004338982.1| - 8.5e-16 57.9 0.0 1.1e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|327312085|ref|YP_004338982.1| - 4e-13 49.0 0.0 6.3e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|327312085|ref|YP_004338982.1| - 3.5e-05 23.8 0.0 0.038 13.9 0.0 2.6 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|327312085|ref|YP_004338982.1| - 0.00063 19.4 1.7 0.025 14.3 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain ArsA_ATPase PF02374.10 gi|327312085|ref|YP_004338982.1| - 0.0041 16.2 1.2 0.078 12.0 0.5 2.5 2 1 1 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|327312085|ref|YP_004338982.1| - 0.16 11.0 0.0 0.39 9.7 0.0 1.6 1 1 0 1 1 1 0 ATPase MipZ AMP-binding PF00501.23 gi|327312086|ref|YP_004338983.1| - 2.3e-50 171.2 0.1 2.2e-49 168.0 0.0 2.0 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|327312086|ref|YP_004338983.1| - 3.3e-06 27.9 1.9 3.3e-06 27.9 1.3 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ARGLU PF15346.1 gi|327312087|ref|YP_004338984.1| - 0.031 14.0 16.2 0.053 13.2 11.2 1.4 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 NERD PF08378.6 gi|327312087|ref|YP_004338984.1| - 0.034 14.4 0.3 0.034 14.4 0.2 2.7 1 1 1 2 2 2 0 Nuclease-related domain V_ATPase_I PF01496.14 gi|327312087|ref|YP_004338984.1| - 0.055 11.3 0.7 0.065 11.0 0.5 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4143 PF13635.1 gi|327312087|ref|YP_004338984.1| - 0.061 13.4 0.4 0.083 13.0 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) DDRGK PF09756.4 gi|327312087|ref|YP_004338984.1| - 0.79 9.1 10.0 1.1 8.5 7.0 1.3 1 0 0 1 1 1 0 DDRGK domain Jnk-SapK_ap_N PF09744.4 gi|327312087|ref|YP_004338984.1| - 1.6 8.7 8.5 2.5 8.0 5.9 1.3 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 APG6 PF04111.7 gi|327312087|ref|YP_004338984.1| - 2.8 6.8 10.8 3.7 6.5 7.5 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 MAP7 PF05672.6 gi|327312087|ref|YP_004338984.1| - 7.5 5.9 22.4 14 5.0 15.5 1.5 1 0 0 1 1 1 0 MAP7 (E-MAP-115) family AIRS_C PF02769.17 gi|327312088|ref|YP_004338985.1| - 5.5e-21 75.1 0.2 8.5e-21 74.5 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|327312088|ref|YP_004338985.1| - 9.3e-17 61.0 1.3 2.2e-16 59.8 0.1 2.2 2 1 1 3 3 3 1 AIR synthase related protein, N-terminal domain Lactamase_B_3 PF13483.1 gi|327312089|ref|YP_004338986.1| - 6.7e-21 74.6 0.0 8.6e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|327312089|ref|YP_004338986.1| - 2.1e-12 47.0 0.3 3.5e-11 43.0 0.2 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|327312089|ref|YP_004338986.1| - 0.49 10.0 5.2 1.8 8.1 3.6 1.8 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily NTPase_I-T PF01931.13 gi|327312093|ref|YP_004338990.1| - 2.9e-30 105.2 0.0 3.5e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF84 PaREP1 PF05942.6 gi|327312095|ref|YP_004338992.1| - 2.7e-27 94.8 9.2 3.7e-27 94.4 6.4 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family MIT PF04212.13 gi|327312095|ref|YP_004338992.1| - 0.61 10.0 4.0 2.4 8.0 0.1 2.6 2 1 1 3 3 3 0 MIT (microtubule interacting and transport) domain HEPN PF05168.9 gi|327312095|ref|YP_004338992.1| - 0.87 9.4 5.7 1.2 9.0 3.9 1.3 1 0 0 1 1 1 0 HEPN domain Glycos_transf_1 PF00534.15 gi|327312097|ref|YP_004338994.1| - 3.9e-15 55.6 0.0 1.1e-14 54.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|327312097|ref|YP_004338994.1| - 8.4e-11 42.1 0.6 4.9e-10 39.6 0.2 2.4 2 2 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|327312097|ref|YP_004338994.1| - 0.0033 17.1 0.0 0.0072 16.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|327312097|ref|YP_004338994.1| - 0.035 14.3 0.0 0.09 13.0 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 Nudix_N PF12535.3 gi|327312097|ref|YP_004338994.1| - 0.16 11.4 0.8 0.28 10.6 0.1 1.8 2 0 0 2 2 2 0 Hydrolase of X-linked nucleoside diphosphate N terminal Glyco_trans_1_3 PF13528.1 gi|327312098|ref|YP_004338995.1| - 0.00091 18.5 0.1 0.0012 18.0 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glyco_trans_1_4 PF13692.1 gi|327312098|ref|YP_004338995.1| - 0.0077 16.3 0.0 0.074 13.1 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|327312102|ref|YP_004338999.1| - 9.9e-18 64.1 0.0 1.5e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|327312102|ref|YP_004338999.1| - 3.1e-06 27.3 0.0 4.8e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|327312102|ref|YP_004338999.1| - 0.00015 21.9 0.0 0.00023 21.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_hydro_43 PF04616.9 gi|327312103|ref|YP_004339000.1| - 0.00046 19.3 0.5 0.19 10.7 0.0 3.3 3 1 0 3 3 3 2 Glycosyl hydrolases family 43 ATP-grasp_4 PF13535.1 gi|327312104|ref|YP_004339001.1| - 1.5e-22 80.2 0.0 2.2e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|327312104|ref|YP_004339001.1| - 4.7e-19 68.3 0.0 1.2e-18 67.0 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|327312104|ref|YP_004339001.1| - 0.0081 16.0 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|327312104|ref|YP_004339001.1| - 0.044 13.0 0.0 0.07 12.4 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HAD_2 PF13419.1 gi|327312105|ref|YP_004339002.1| - 2.3e-11 44.2 0.7 9.5e-11 42.2 0.5 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|327312105|ref|YP_004339002.1| - 0.13 11.8 0.1 0.21 11.1 0.1 1.7 1 1 0 1 1 1 0 Acid Phosphatase phiKZ_IP PF12699.2 gi|327312106|ref|YP_004339003.1| - 0.003 16.5 0.7 0.0037 16.2 0.5 1.1 1 0 0 1 1 1 1 phiKZ-like phage internal head proteins PhoU_div PF01865.11 gi|327312106|ref|YP_004339003.1| - 0.0062 15.7 0.1 0.0082 15.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 FliD_C PF07195.7 gi|327312106|ref|YP_004339003.1| - 0.015 14.6 0.0 0.017 14.3 0.0 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Baculo_gp64 PF03273.8 gi|327312106|ref|YP_004339003.1| - 0.03 12.4 0.1 0.036 12.2 0.1 1.0 1 0 0 1 1 1 0 Baculovirus gp64 envelope glycoprotein family Nup54 PF13874.1 gi|327312106|ref|YP_004339003.1| - 0.044 13.4 0.2 0.16 11.6 0.0 1.5 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Jnk-SapK_ap_N PF09744.4 gi|327312106|ref|YP_004339003.1| - 0.047 13.6 0.3 0.055 13.4 0.2 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Prefoldin_2 PF01920.15 gi|327312106|ref|YP_004339003.1| - 0.055 13.2 0.8 0.26 11.0 0.1 1.9 1 1 1 2 2 2 0 Prefoldin subunit Tropomyosin PF00261.15 gi|327312106|ref|YP_004339003.1| - 0.069 12.2 3.1 0.11 11.6 2.1 1.3 1 1 0 1 1 1 0 Tropomyosin BLOC1_2 PF10046.4 gi|327312106|ref|YP_004339003.1| - 0.078 13.1 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4200 PF13863.1 gi|327312106|ref|YP_004339003.1| - 0.086 12.7 0.6 0.12 12.3 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) CENP-F_leu_zip PF10473.4 gi|327312106|ref|YP_004339003.1| - 0.11 12.3 2.9 0.34 10.7 2.0 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|327312106|ref|YP_004339003.1| - 0.11 12.2 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_DNA_bd PF12329.3 gi|327312106|ref|YP_004339003.1| - 0.11 12.2 0.9 0.23 11.2 0.7 1.6 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|327312106|ref|YP_004339003.1| - 0.36 10.3 2.7 0.61 9.6 1.2 1.9 1 1 1 2 2 2 0 Septum formation initiator Hpt PF01627.18 gi|327312106|ref|YP_004339003.1| - 1.5 8.9 5.4 6.5 6.8 3.8 2.0 1 1 0 1 1 1 0 Hpt domain DUF4140 PF13600.1 gi|327312106|ref|YP_004339003.1| - 1.6 9.2 5.1 3.1 8.2 0.3 2.3 2 1 1 3 3 2 0 N-terminal domain of unknown function (DUF4140) DUF2732 PF10809.3 gi|327312106|ref|YP_004339003.1| - 4.6 6.8 6.3 4.2 6.9 2.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2732) KfrA_N PF11740.3 gi|327312106|ref|YP_004339003.1| - 7.3 7.0 8.8 3.3 8.1 4.3 1.7 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term DUF1664 PF07889.7 gi|327312107|ref|YP_004339004.1| - 7.5e-05 22.5 1.3 8.6e-05 22.3 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) NPV_P10 PF05531.7 gi|327312107|ref|YP_004339004.1| - 0.00026 21.1 1.0 0.038 14.2 0.1 2.0 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein Reo_sigmaC PF04582.7 gi|327312107|ref|YP_004339004.1| - 0.0012 18.1 0.2 0.0012 18.1 0.1 1.0 1 0 0 1 1 1 1 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|327312107|ref|YP_004339004.1| - 0.0012 18.7 0.1 0.0013 18.6 0.0 1.1 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DegS PF05384.6 gi|327312107|ref|YP_004339004.1| - 0.0042 16.3 1.2 0.0046 16.1 0.8 1.0 1 0 0 1 1 1 1 Sensor protein DegS Laminin_II PF06009.7 gi|327312107|ref|YP_004339004.1| - 0.0064 16.2 0.3 0.0073 16.0 0.2 1.1 1 0 0 1 1 1 1 Laminin Domain II MCPsignal PF00015.16 gi|327312107|ref|YP_004339004.1| - 0.007 15.9 1.2 0.0073 15.8 0.8 1.0 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain MscS_porin PF12795.2 gi|327312107|ref|YP_004339004.1| - 0.0076 15.5 0.3 0.0088 15.3 0.2 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain TBPIP PF07106.8 gi|327312107|ref|YP_004339004.1| - 0.0078 15.7 0.1 0.0085 15.6 0.1 1.0 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FliJ PF02050.11 gi|327312107|ref|YP_004339004.1| - 0.013 15.5 0.1 0.013 15.5 0.1 1.1 1 0 0 1 1 1 0 Flagellar FliJ protein Syntaxin-6_N PF09177.6 gi|327312107|ref|YP_004339004.1| - 0.014 15.8 0.2 0.015 15.6 0.2 1.1 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DUF972 PF06156.8 gi|327312107|ref|YP_004339004.1| - 0.015 15.5 0.1 0.017 15.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) IncA PF04156.9 gi|327312107|ref|YP_004339004.1| - 0.016 14.7 0.1 0.016 14.7 0.0 1.1 1 0 0 1 1 1 0 IncA protein SlyX PF04102.7 gi|327312107|ref|YP_004339004.1| - 0.018 15.4 1.8 0.021 15.1 1.3 1.4 1 1 0 1 1 1 0 SlyX Myosin_tail_1 PF01576.14 gi|327312107|ref|YP_004339004.1| - 0.018 12.8 0.2 0.018 12.8 0.1 1.0 1 0 0 1 1 1 0 Myosin tail EzrA PF06160.7 gi|327312107|ref|YP_004339004.1| - 0.02 13.0 0.2 0.022 12.9 0.1 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DivIC PF04977.10 gi|327312107|ref|YP_004339004.1| - 0.024 14.1 0.3 0.029 13.8 0.2 1.2 1 0 0 1 1 1 0 Septum formation initiator DUF641 PF04859.7 gi|327312107|ref|YP_004339004.1| - 0.025 14.3 0.2 0.025 14.3 0.1 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Nup54 PF13874.1 gi|327312107|ref|YP_004339004.1| - 0.03 13.9 0.4 0.032 13.8 0.2 1.1 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Transposase_22 PF02994.9 gi|327312107|ref|YP_004339004.1| - 0.033 12.6 0.9 0.064 11.7 0.7 1.5 1 1 0 1 1 1 0 L1 transposable element DUF948 PF06103.6 gi|327312107|ref|YP_004339004.1| - 0.043 13.6 0.6 0.13 12.1 0.3 1.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TMF_TATA_bd PF12325.3 gi|327312107|ref|YP_004339004.1| - 0.059 13.0 1.1 0.1 12.3 0.7 1.5 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF745 PF05335.8 gi|327312107|ref|YP_004339004.1| - 0.061 12.8 0.2 0.066 12.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF745) FlaC_arch PF05377.6 gi|327312107|ref|YP_004339004.1| - 0.063 13.1 3.8 0.19 11.6 1.4 2.1 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Ten1_2 PF15490.1 gi|327312107|ref|YP_004339004.1| - 0.07 12.7 0.2 0.083 12.4 0.1 1.3 1 1 0 1 1 1 0 Telomere-capping, CST complex subunit ALIX_LYPXL_bnd PF13949.1 gi|327312107|ref|YP_004339004.1| - 0.077 11.9 0.1 0.078 11.9 0.1 1.0 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF2570 PF10828.3 gi|327312107|ref|YP_004339004.1| - 0.085 12.4 0.6 0.093 12.3 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) Spc24 PF08286.6 gi|327312107|ref|YP_004339004.1| - 0.088 12.5 0.1 0.095 12.3 0.0 1.1 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Cob_adeno_trans PF01923.13 gi|327312107|ref|YP_004339004.1| - 0.093 12.5 0.1 0.1 12.3 0.1 1.1 1 0 0 1 1 1 0 Cobalamin adenosyltransferase H-kinase_dim PF02895.9 gi|327312107|ref|YP_004339004.1| - 0.093 13.0 0.4 1 9.7 0.3 2.1 1 1 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain COG2 PF06148.6 gi|327312107|ref|YP_004339004.1| - 0.13 12.1 1.1 0.18 11.6 0.8 1.5 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 SNARE PF05739.14 gi|327312107|ref|YP_004339004.1| - 1.4 8.6 5.7 2.4 7.9 2.2 1.8 1 1 1 2 2 2 0 SNARE domain